Query 036208
Match_columns 279
No_of_seqs 126 out of 1201
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 10:30:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036208.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036208hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0100 Molecular chaperones G 100.0 6.5E-55 1.4E-59 356.8 25.3 270 6-279 35-305 (663)
2 PTZ00009 heat shock 70 kDa pro 100.0 2.6E-50 5.7E-55 368.2 35.2 272 6-279 3-275 (653)
3 PTZ00186 heat shock 70 kDa pre 100.0 1.2E-49 2.7E-54 361.1 32.7 267 6-279 26-292 (657)
4 PTZ00400 DnaK-type molecular c 100.0 1.5E-49 3.2E-54 363.1 33.2 266 6-279 40-306 (663)
5 PF00012 HSP70: Hsp70 protein; 100.0 3.2E-49 7E-54 362.4 33.0 267 9-278 1-267 (602)
6 PRK13410 molecular chaperone D 100.0 5.6E-49 1.2E-53 358.4 33.5 264 8-279 3-267 (668)
7 PRK00290 dnaK molecular chaper 100.0 1E-48 2.2E-53 357.5 33.4 262 8-279 3-265 (627)
8 PRK13411 molecular chaperone D 100.0 2.2E-48 4.8E-53 355.2 33.6 263 8-279 3-266 (653)
9 PLN03184 chloroplast Hsp70; Pr 100.0 3E-48 6.6E-53 354.6 33.2 265 7-279 39-304 (673)
10 TIGR02350 prok_dnaK chaperone 100.0 6.6E-48 1.4E-52 351.1 32.7 262 8-279 1-263 (595)
11 CHL00094 dnaK heat shock prote 100.0 2.7E-47 5.9E-52 347.2 33.5 264 8-279 3-267 (621)
12 PRK05183 hscA chaperone protei 100.0 1.5E-46 3.3E-51 341.1 32.4 260 6-279 18-277 (616)
13 TIGR01991 HscA Fe-S protein as 100.0 2.6E-46 5.6E-51 338.9 31.5 256 9-279 1-257 (599)
14 COG0443 DnaK Molecular chapero 100.0 3.9E-45 8.5E-50 327.5 30.0 247 6-279 4-252 (579)
15 KOG0103 Molecular chaperones H 100.0 2.7E-45 5.7E-50 317.9 21.9 270 9-278 3-275 (727)
16 KOG0101 Molecular chaperones H 100.0 8.6E-44 1.9E-48 310.9 22.7 277 1-279 1-277 (620)
17 PRK01433 hscA chaperone protei 100.0 1.5E-42 3.2E-47 312.6 27.9 241 7-279 19-263 (595)
18 KOG0102 Molecular chaperones m 100.0 1.9E-40 4.1E-45 280.3 23.5 267 5-279 25-292 (640)
19 KOG0104 Molecular chaperones G 100.0 7E-40 1.5E-44 285.5 27.0 272 6-278 21-306 (902)
20 PRK11678 putative chaperone; P 100.0 5.6E-39 1.2E-43 280.2 27.3 209 9-252 2-269 (450)
21 PRK13929 rod-share determining 100.0 6.5E-27 1.4E-31 199.1 22.5 187 9-251 6-197 (335)
22 PRK13928 rod shape-determining 99.9 4.2E-26 9E-31 194.7 21.7 187 10-252 6-195 (336)
23 TIGR00904 mreB cell shape dete 99.9 3.1E-25 6.8E-30 189.2 21.8 186 10-251 5-197 (333)
24 PF06723 MreB_Mbl: MreB/Mbl pr 99.9 4.1E-25 9E-30 184.3 17.4 203 8-272 2-207 (326)
25 PRK13927 rod shape-determining 99.9 1.7E-24 3.7E-29 184.9 21.4 187 8-251 6-195 (334)
26 PRK13930 rod shape-determining 99.9 6.1E-24 1.3E-28 181.7 21.0 187 9-251 10-199 (335)
27 COG1077 MreB Actin-like ATPase 99.9 1.1E-22 2.4E-27 164.1 17.7 191 7-253 6-202 (342)
28 TIGR02529 EutJ ethanolamine ut 99.8 4.2E-19 9.1E-24 143.7 15.6 116 118-247 36-151 (239)
29 PRK15080 ethanolamine utilizat 99.7 6.3E-16 1.4E-20 127.4 20.1 114 121-248 66-179 (267)
30 PRK09472 ftsA cell division pr 99.5 3.5E-13 7.6E-18 118.3 16.3 89 159-256 168-262 (420)
31 COG0849 ftsA Cell division ATP 99.5 5.4E-13 1.2E-17 114.7 16.2 218 8-256 7-261 (418)
32 cd00012 ACTIN Actin; An ubiqui 99.5 6.3E-13 1.4E-17 115.4 16.7 180 9-250 1-191 (371)
33 smart00268 ACTIN Actin. ACTIN 99.5 7.8E-13 1.7E-17 114.9 17.1 179 8-249 2-190 (373)
34 TIGR01174 ftsA cell division p 99.5 6E-13 1.3E-17 115.3 15.0 82 157-247 158-239 (371)
35 PTZ00280 Actin-related protein 99.4 2.1E-10 4.6E-15 100.9 20.7 128 118-249 78-207 (414)
36 COG4820 EutJ Ethanolamine util 99.3 3.3E-12 7.3E-17 96.6 6.3 107 124-244 74-180 (277)
37 PTZ00004 actin-2; Provisional 99.3 6.9E-10 1.5E-14 96.4 18.2 181 6-249 5-196 (378)
38 PF00022 Actin: Actin; InterP 99.2 3.3E-10 7.1E-15 99.2 14.7 182 6-250 3-190 (393)
39 PTZ00281 actin; Provisional 99.2 1.1E-09 2.4E-14 95.0 17.7 184 3-249 2-196 (376)
40 PTZ00452 actin; Provisional 99.2 1.7E-09 3.8E-14 93.6 17.9 180 7-249 5-195 (375)
41 KOG0679 Actin-related protein 99.2 2.2E-09 4.8E-14 89.0 16.9 186 3-250 7-202 (426)
42 PTZ00466 actin-like protein; P 99.1 5.1E-09 1.1E-13 90.8 16.2 178 8-249 13-201 (380)
43 PRK10719 eutA reactivating fac 99.0 2.8E-09 6.1E-14 92.0 10.3 83 145-242 90-184 (475)
44 TIGR03739 PRTRC_D PRTRC system 99.0 4.5E-09 9.8E-14 89.3 11.5 107 142-251 101-216 (320)
45 PRK13917 plasmid segregation p 99.0 3.3E-08 7E-13 84.7 16.1 101 145-248 114-231 (344)
46 TIGR01175 pilM type IV pilus a 98.7 4.1E-06 8.9E-11 72.2 19.7 87 156-247 142-231 (348)
47 COG5277 Actin and related prot 98.7 9.9E-07 2.2E-11 77.4 15.8 126 117-252 79-206 (444)
48 PF06406 StbA: StbA protein; 98.6 7.4E-07 1.6E-11 75.6 11.0 73 171-249 140-212 (318)
49 PF06277 EutA: Ethanolamine ut 98.3 5.4E-06 1.2E-10 72.0 10.8 86 145-239 87-178 (473)
50 PF11104 PilM_2: Type IV pilus 98.2 0.00018 4E-09 61.7 17.5 87 156-247 135-223 (340)
51 KOG0797 Actin-related protein 98.1 4.8E-05 1E-09 66.0 11.3 122 116-249 195-322 (618)
52 KOG0676 Actin and related prot 98.1 0.00017 3.6E-09 61.6 14.2 114 120-249 77-192 (372)
53 KOG0681 Actin-related protein 98.0 7.7E-05 1.7E-09 65.2 11.7 130 115-252 88-218 (645)
54 PF07520 SrfB: Virulence facto 97.9 0.00095 2.1E-08 63.3 16.0 137 116-252 415-628 (1002)
55 PRK11031 guanosine pentaphosph 97.8 0.00085 1.8E-08 60.5 14.7 77 158-242 93-170 (496)
56 COG4972 PilM Tfp pilus assembl 97.7 0.011 2.3E-07 49.3 17.6 86 157-247 149-236 (354)
57 PRK10854 exopolyphosphatase; P 97.6 0.0013 2.9E-08 59.6 13.5 91 124-219 65-157 (513)
58 KOG0680 Actin-related protein 97.3 0.003 6.5E-08 52.2 9.8 190 7-248 3-198 (400)
59 TIGR03706 exo_poly_only exopol 97.3 0.0052 1.1E-07 51.8 11.7 109 124-242 54-163 (300)
60 COG0248 GppA Exopolyphosphatas 97.2 0.01 2.2E-07 53.2 13.2 59 158-218 90-148 (492)
61 KOG0677 Actin-related protein 97.1 0.012 2.6E-07 47.3 11.1 97 140-249 98-196 (389)
62 TIGR00241 CoA_E_activ CoA-subs 97.0 0.034 7.4E-07 45.5 13.7 65 175-247 73-137 (248)
63 COG4819 EutA Ethanolamine util 97.0 0.0039 8.6E-08 51.8 7.8 72 145-220 89-166 (473)
64 COG4457 SrfB Uncharacterized p 96.7 0.081 1.7E-06 48.3 14.1 53 117-169 423-489 (1014)
65 PF02541 Ppx-GppA: Ppx/GppA ph 96.4 0.011 2.4E-07 49.4 7.0 75 161-243 76-151 (285)
66 COG1548 Predicted transcriptio 96.2 0.085 1.8E-06 42.5 10.2 74 128-219 76-150 (330)
67 PF08841 DDR: Diol dehydratase 95.9 0.052 1.1E-06 44.3 7.8 74 163-245 102-175 (332)
68 smart00842 FtsA Cell division 95.7 0.054 1.2E-06 42.3 7.3 30 157-186 157-186 (187)
69 KOG0678 Actin-related protein 95.1 0.87 1.9E-05 38.2 12.4 121 119-249 83-209 (415)
70 COG5026 Hexokinase [Carbohydra 95.0 1 2.2E-05 39.4 13.1 22 3-24 71-92 (466)
71 PF08735 DUF1786: Putative pyr 94.6 0.59 1.3E-05 38.0 10.1 106 140-252 111-218 (254)
72 PLN02405 hexokinase 94.2 0.5 1.1E-05 42.6 9.8 34 158-191 207-242 (497)
73 PF14450 FtsA: Cell division p 93.7 0.1 2.2E-06 37.5 3.9 49 201-249 1-54 (120)
74 PLN02914 hexokinase 93.5 0.63 1.4E-05 41.9 9.3 54 158-217 207-262 (490)
75 PLN02362 hexokinase 93.3 0.7 1.5E-05 41.8 9.2 33 158-190 207-241 (509)
76 PF00349 Hexokinase_1: Hexokin 93.2 0.13 2.7E-06 40.8 4.0 31 159-189 171-204 (206)
77 PF01968 Hydantoinase_A: Hydan 92.9 0.12 2.7E-06 43.3 3.7 40 174-217 56-95 (290)
78 COG4012 Uncharacterized protei 92.4 1.7 3.6E-05 35.5 9.1 74 174-254 207-280 (342)
79 PLN02596 hexokinase-like 91.8 1.6 3.4E-05 39.4 9.4 55 158-218 207-263 (490)
80 KOG1369 Hexokinase [Carbohydra 91.6 1.3 2.9E-05 39.5 8.6 57 158-220 193-252 (474)
81 cd06007 R3H_DEXH_helicase R3H 91.4 0.96 2.1E-05 27.9 5.4 37 135-173 8-44 (59)
82 PTZ00107 hexokinase; Provision 90.6 4.9 0.00011 36.2 11.3 34 158-191 196-231 (464)
83 cd02640 R3H_NRF R3H domain of 90.2 1.3 2.8E-05 27.4 5.2 41 132-173 5-45 (60)
84 PF00370 FGGY_N: FGGY family o 90.1 0.31 6.7E-06 39.7 3.2 20 8-27 1-20 (245)
85 smart00732 YqgFc Likely ribonu 89.6 0.41 8.9E-06 32.8 3.1 18 8-25 2-19 (99)
86 PF14450 FtsA: Cell division p 88.7 0.92 2E-05 32.5 4.4 22 9-30 1-22 (120)
87 COG1070 XylB Sugar (pentulose 88.4 0.64 1.4E-05 42.3 4.3 22 6-27 3-24 (502)
88 PF00349 Hexokinase_1: Hexokin 88.0 2.5 5.4E-05 33.5 6.8 55 196-253 60-119 (206)
89 PF03652 UPF0081: Uncharacteri 87.9 0.62 1.3E-05 34.2 3.2 21 8-28 2-22 (135)
90 cd02641 R3H_Smubp-2_like R3H d 87.6 2.9 6.3E-05 25.8 5.6 41 132-173 5-45 (60)
91 TIGR03192 benz_CoA_bzdQ benzoy 87.1 0.65 1.4E-05 38.8 3.2 21 7-27 32-52 (293)
92 PRK10331 L-fuculokinase; Provi 86.8 0.61 1.3E-05 42.1 3.2 20 8-27 3-22 (470)
93 PRK00109 Holliday junction res 86.1 1.1 2.4E-05 33.1 3.6 22 6-27 3-24 (138)
94 PRK10939 autoinducer-2 (AI-2) 86.1 0.68 1.5E-05 42.4 3.0 21 7-27 3-23 (520)
95 cd02639 R3H_RRM R3H domain of 85.9 2.4 5.3E-05 26.2 4.5 31 143-173 15-45 (60)
96 PRK00047 glpK glycerol kinase; 85.9 0.87 1.9E-05 41.4 3.7 20 7-26 5-24 (498)
97 PTZ00294 glycerol kinase-like 85.7 0.84 1.8E-05 41.6 3.4 20 8-27 3-22 (504)
98 COG0145 HyuA N-methylhydantoin 85.6 1.3 2.8E-05 41.6 4.6 39 175-217 257-296 (674)
99 TIGR03286 methan_mark_15 putat 85.5 0.82 1.8E-05 39.9 3.1 24 4-27 141-164 (404)
100 PRK15027 xylulokinase; Provisi 84.9 0.86 1.9E-05 41.3 3.1 20 8-27 1-20 (484)
101 cd02646 R3H_G-patch R3H domain 84.9 3.5 7.6E-05 25.2 4.9 41 130-173 3-43 (58)
102 TIGR02259 benz_CoA_red_A benzo 84.7 0.92 2E-05 39.4 3.0 22 7-28 2-23 (432)
103 TIGR02628 fuculo_kin_coli L-fu 84.6 0.94 2E-05 40.8 3.2 20 8-27 2-21 (465)
104 PRK13317 pantothenate kinase; 84.5 1.7 3.6E-05 36.3 4.4 21 8-28 3-23 (277)
105 cd00529 RuvC_resolvase Hollida 84.3 1.8 3.8E-05 32.6 4.1 26 8-33 1-28 (154)
106 PRK04123 ribulokinase; Provisi 83.8 1.2 2.7E-05 41.0 3.7 19 7-25 3-21 (548)
107 PLN02295 glycerol kinase 83.5 1.1 2.4E-05 40.9 3.3 19 8-26 1-19 (512)
108 PRK13331 pantothenate kinase; 83.2 2.1 4.5E-05 35.1 4.4 28 1-28 1-28 (251)
109 TIGR03123 one_C_unchar_1 proba 82.5 0.98 2.1E-05 38.3 2.3 21 199-219 128-148 (318)
110 TIGR01234 L-ribulokinase L-rib 82.1 1.5 3.3E-05 40.3 3.6 18 8-25 2-19 (536)
111 COG0816 Predicted endonuclease 81.6 1.8 4E-05 31.9 3.2 22 7-28 2-23 (141)
112 TIGR01311 glycerol_kin glycero 81.6 1.5 3.3E-05 39.8 3.4 20 8-27 2-21 (493)
113 TIGR01314 gntK_FGGY gluconate 81.6 1.5 3.4E-05 39.9 3.4 20 8-27 1-20 (505)
114 PLN02669 xylulokinase 81.1 1.7 3.6E-05 40.2 3.4 22 6-27 7-28 (556)
115 TIGR02261 benz_CoA_red_D benzo 80.9 2.5 5.4E-05 34.8 4.0 19 8-26 2-20 (262)
116 TIGR01315 5C_CHO_kinase FGGY-f 80.0 1.9 4E-05 39.8 3.4 19 9-27 2-20 (541)
117 COG1924 Activator of 2-hydroxy 78.1 3.1 6.7E-05 35.8 3.8 24 5-28 133-156 (396)
118 PF02075 RuvC: Crossover junct 77.5 5 0.00011 30.0 4.4 25 9-33 1-27 (149)
119 PF13941 MutL: MutL protein 77.1 3.5 7.6E-05 36.8 4.1 41 174-217 226-266 (457)
120 COG1940 NagC Transcriptional r 75.4 49 0.0011 27.9 12.7 39 169-210 106-144 (314)
121 PRK09698 D-allose kinase; Prov 74.7 50 0.0011 27.7 12.3 21 6-26 3-23 (302)
122 PRK09557 fructokinase; Reviewe 74.3 51 0.0011 27.6 11.6 39 169-210 96-134 (301)
123 PF02685 Glucokinase: Glucokin 74.3 36 0.00077 29.0 9.3 128 119-251 37-181 (316)
124 TIGR01319 glmL_fam conserved h 73.4 4.2 9E-05 36.2 3.5 42 174-215 222-265 (463)
125 KOG2517 Ribulose kinase and re 72.5 4.8 0.0001 36.4 3.7 20 6-25 5-24 (516)
126 PRK00039 ruvC Holliday junctio 72.3 6.2 0.00013 30.0 3.9 19 7-25 2-20 (164)
127 PRK13321 pantothenate kinase; 72.1 4.8 0.0001 33.1 3.5 19 9-27 2-20 (256)
128 PRK13318 pantothenate kinase; 71.7 5 0.00011 33.0 3.5 20 9-28 2-21 (258)
129 PRK00124 hypothetical protein; 71.3 36 0.00078 25.5 7.5 90 158-256 12-120 (151)
130 COG1940 NagC Transcriptional r 70.1 32 0.0007 29.0 8.3 58 197-254 4-61 (314)
131 PLN02666 5-oxoprolinase 69.6 6.7 0.00015 39.9 4.4 42 175-217 291-332 (1275)
132 TIGR00250 RNAse_H_YqgF RNAse H 69.2 3.8 8.2E-05 29.8 2.0 18 10-27 1-18 (130)
133 PF14574 DUF4445: Domain of un 68.5 7.1 0.00015 34.5 3.9 45 8-62 2-46 (412)
134 PF02639 DUF188: Uncharacteriz 67.8 38 0.00082 24.7 7.0 104 162-276 2-127 (130)
135 PF05378 Hydant_A_N: Hydantoin 67.7 5.8 0.00013 30.6 2.9 18 10-27 2-19 (176)
136 PF13941 MutL: MutL protein 67.4 18 0.0004 32.4 6.2 47 201-247 2-49 (457)
137 PTZ00107 hexokinase; Provision 64.5 22 0.00048 32.1 6.3 26 196-221 71-96 (464)
138 PRK13321 pantothenate kinase; 63.6 42 0.0009 27.6 7.4 17 201-217 2-18 (256)
139 TIGR00555 panK_eukar pantothen 63.2 9.3 0.0002 31.8 3.5 23 8-30 1-24 (279)
140 COG4012 Uncharacterized protei 62.3 18 0.0004 29.7 4.8 49 200-249 2-73 (342)
141 PF01548 DEDD_Tnp_IS110: Trans 62.1 16 0.00034 26.8 4.3 20 9-28 1-20 (144)
142 smart00732 YqgFc Likely ribonu 61.6 27 0.00059 23.4 5.2 22 200-221 2-23 (99)
143 PRK13326 pantothenate kinase; 61.3 13 0.00028 30.8 3.9 23 6-28 5-27 (262)
144 COG5026 Hexokinase [Carbohydra 61.0 25 0.00053 31.2 5.6 25 196-220 72-96 (466)
145 PF02685 Glucokinase: Glucokin 60.1 17 0.00036 31.0 4.6 46 202-249 1-48 (316)
146 PRK00292 glk glucokinase; Prov 59.9 11 0.00023 32.1 3.4 53 165-217 86-146 (316)
147 TIGR02707 butyr_kinase butyrat 59.6 23 0.0005 30.7 5.4 53 201-253 2-58 (351)
148 PLN02596 hexokinase-like 59.4 56 0.0012 29.7 7.9 27 195-221 92-118 (490)
149 KOG1385 Nucleoside phosphatase 58.6 8.5 0.00018 33.7 2.5 20 198-217 212-231 (453)
150 PRK13320 pantothenate kinase; 58.1 14 0.00031 30.1 3.7 21 8-28 3-23 (244)
151 PLN02914 hexokinase 57.9 37 0.00081 30.9 6.5 27 195-221 91-117 (490)
152 COG1069 AraB Ribulose kinase [ 54.5 13 0.00028 33.8 3.0 20 6-25 2-21 (544)
153 TIGR01312 XylB D-xylulose kina 54.4 8.5 0.00018 34.8 2.0 17 10-26 1-17 (481)
154 PF00480 ROK: ROK family; Int 53.9 94 0.002 23.5 8.5 88 119-216 31-134 (179)
155 PF09843 DUF2070: Predicted me 53.8 44 0.00096 25.8 5.6 79 158-254 22-100 (179)
156 PRK13318 pantothenate kinase; 53.4 79 0.0017 25.9 7.4 17 201-217 2-18 (258)
157 TIGR00228 ruvC crossover junct 52.4 16 0.00035 27.5 2.9 17 9-25 1-17 (156)
158 TIGR02627 rhamnulo_kin rhamnul 52.1 7.6 0.00016 34.9 1.3 16 10-25 1-16 (454)
159 TIGR01865 cas_Csn1 CRISPR-asso 50.8 15 0.00032 35.7 3.1 20 8-27 2-21 (805)
160 PTZ00288 glucokinase 1; Provis 50.5 15 0.00032 32.5 2.8 20 7-26 26-45 (405)
161 PRK13324 pantothenate kinase; 50.4 21 0.00045 29.4 3.5 20 9-28 2-21 (258)
162 PRK15080 ethanolamine utilizat 50.3 52 0.0011 27.2 5.9 57 196-252 21-77 (267)
163 PF03309 Pan_kinase: Type III 50.0 24 0.00052 27.9 3.7 20 9-28 1-20 (206)
164 COG0554 GlpK Glycerol kinase [ 49.8 16 0.00035 32.7 2.8 21 6-26 4-24 (499)
165 PRK12408 glucokinase; Provisio 49.4 16 0.00034 31.5 2.7 50 167-216 106-163 (336)
166 TIGR00671 baf pantothenate kin 49.1 21 0.00045 29.1 3.3 19 10-28 2-20 (243)
167 PLN02362 hexokinase 48.8 42 0.00092 30.7 5.4 26 196-221 92-117 (509)
168 KOG1386 Nucleoside phosphatase 48.4 84 0.0018 28.4 6.9 135 120-256 60-237 (501)
169 PRK14101 bifunctional glucokin 47.0 18 0.00039 34.2 3.0 21 5-25 16-36 (638)
170 COG2971 Predicted N-acetylgluc 45.6 26 0.00057 29.4 3.3 21 5-25 3-23 (301)
171 PF01968 Hydantoinase_A: Hydan 45.4 30 0.00065 29.1 3.8 27 7-33 77-103 (290)
172 TIGR00744 ROK_glcA_fam ROK fam 45.3 1E+02 0.0023 25.9 7.2 71 142-216 57-140 (318)
173 COG4020 Uncharacterized protei 45.3 22 0.00047 29.1 2.7 21 7-27 3-23 (332)
174 COG0837 Glk Glucokinase [Carbo 44.9 50 0.0011 27.9 4.8 48 201-250 8-55 (320)
175 PF01424 R3H: R3H domain; Int 44.3 58 0.0013 19.9 4.1 26 147-173 22-47 (63)
176 PF01150 GDA1_CD39: GDA1/CD39 44.0 28 0.00062 31.0 3.6 125 124-249 65-234 (434)
177 PRK13902 alaS alanyl-tRNA synt 43.9 3.4E+02 0.0075 27.1 13.0 91 118-208 593-691 (900)
178 PF05378 Hydant_A_N: Hydantoin 43.4 92 0.002 23.9 5.9 22 202-223 2-23 (176)
179 TIGR03706 exo_poly_only exopol 43.3 64 0.0014 27.2 5.5 25 201-225 2-26 (300)
180 PRK09698 D-allose kinase; Prov 42.6 1.5E+02 0.0034 24.7 7.8 26 198-223 3-28 (302)
181 TIGR03123 one_C_unchar_1 proba 42.3 34 0.00073 29.2 3.6 27 6-32 127-153 (318)
182 PTZ00288 glucokinase 1; Provis 41.8 2.5E+02 0.0055 24.9 9.3 23 197-219 24-46 (405)
183 COG1521 Pantothenate kinase ty 41.1 34 0.00074 28.1 3.3 20 9-28 2-21 (251)
184 PRK00976 hypothetical protein; 40.4 42 0.0009 28.7 3.8 21 8-28 2-22 (326)
185 PLN02405 hexokinase 39.9 1.3E+02 0.0029 27.5 7.2 25 196-220 92-116 (497)
186 PLN00130 succinate dehydrogena 39.9 3.3 7.1E-05 31.5 -2.4 21 7-27 57-77 (213)
187 PRK10854 exopolyphosphatase; P 39.8 61 0.0013 29.8 5.1 34 195-228 7-40 (513)
188 PRK12408 glucokinase; Provisio 39.7 41 0.00089 28.9 3.8 25 196-220 13-37 (336)
189 TIGR03829 YokU_near_AblA uncha 39.7 1E+02 0.0022 20.8 4.8 74 197-279 12-85 (89)
190 COG0145 HyuA N-methylhydantoin 39.2 40 0.00087 32.0 3.9 26 8-33 279-304 (674)
191 PF04481 DUF561: Protein of un 38.5 1.4E+02 0.0031 24.0 6.1 52 114-172 96-147 (242)
192 COG3513 Predicted CRISPR-assoc 37.8 32 0.0007 33.0 3.0 23 5-27 2-24 (1088)
193 COG3734 DgoK 2-keto-3-deoxy-ga 37.7 71 0.0015 26.7 4.6 23 6-28 4-26 (306)
194 PF04723 GRDA: Glycine reducta 37.4 91 0.002 22.9 4.5 44 146-189 41-87 (150)
195 TIGR03683 A-tRNA_syn_arch alan 36.8 4.5E+02 0.0097 26.3 13.2 91 118-208 597-695 (902)
196 PF01385 OrfB_IS605: Probable 35.8 22 0.00047 28.2 1.5 23 5-27 122-144 (227)
197 PRK05082 N-acetylmannosamine k 35.2 1.9E+02 0.0042 24.0 7.2 50 200-249 2-51 (291)
198 PF09547 Spore_IV_A: Stage IV 33.9 1.2E+02 0.0027 27.1 5.7 141 118-278 215-362 (492)
199 PRK13311 N-acetyl-D-glucosamin 33.3 48 0.001 27.1 3.2 39 169-210 96-134 (256)
200 smart00842 FtsA Cell division 33.0 88 0.0019 24.1 4.5 30 201-230 1-31 (187)
201 PF14239 RRXRR: RRXRR protein 32.4 69 0.0015 24.7 3.6 22 6-27 50-71 (176)
202 PRK13311 N-acetyl-D-glucosamin 32.0 2.4E+02 0.0052 22.9 7.1 47 201-248 2-48 (256)
203 TIGR02836 spore_IV_A stage IV 31.7 1.2E+02 0.0026 27.2 5.3 142 117-278 214-362 (492)
204 PRK13322 pantothenate kinase; 31.0 55 0.0012 26.8 3.1 18 9-26 2-19 (246)
205 TIGR00749 glk glucokinase, pro 30.8 1E+02 0.0023 26.1 4.9 45 202-248 1-45 (316)
206 TIGR02261 benz_CoA_red_D benzo 30.8 2.2E+02 0.0048 23.6 6.5 29 201-229 3-31 (262)
207 smart00393 R3H Putative single 30.6 1.5E+02 0.0033 19.1 6.5 28 145-173 36-63 (79)
208 PF04312 DUF460: Protein of un 30.1 1.1E+02 0.0024 22.5 4.1 25 5-29 30-54 (138)
209 PRK14878 UGMP family protein; 30.0 3.5E+02 0.0076 23.1 9.9 88 142-241 65-158 (323)
210 PF12237 PCIF1_WW: Phosphoryla 30.0 1.4E+02 0.0029 23.1 4.8 44 120-163 112-155 (176)
211 PRK03011 butyrate kinase; Prov 29.8 66 0.0014 28.0 3.5 22 8-29 3-24 (358)
212 PF01869 BcrAD_BadFG: BadF/Bad 29.5 1.6E+02 0.0036 24.1 5.8 20 202-221 1-20 (271)
213 PF00370 FGGY_N: FGGY family o 28.3 1.3E+02 0.0029 24.1 5.0 21 200-220 1-21 (245)
214 PRK00292 glk glucokinase; Prov 28.3 1.8E+02 0.0038 24.6 5.9 23 200-222 3-25 (316)
215 PRK13329 pantothenate kinase; 28.1 2.4E+02 0.0052 23.1 6.3 14 198-211 118-131 (249)
216 TIGR03281 methan_mark_12 putat 27.9 38 0.00082 28.6 1.6 20 9-28 1-20 (326)
217 PF01869 BcrAD_BadFG: BadF/Bad 27.1 3.5E+02 0.0076 22.1 17.8 19 10-28 1-19 (271)
218 COG1126 GlnQ ABC-type polar am 26.9 62 0.0013 26.1 2.6 38 147-184 130-167 (240)
219 TIGR01319 glmL_fam conserved h 26.5 1.5E+02 0.0033 26.7 5.1 51 204-255 1-51 (463)
220 PF10982 DUF2789: Protein of u 26.2 76 0.0016 20.5 2.4 23 145-167 36-58 (74)
221 COG1710 Uncharacterized protei 26.0 2.2E+02 0.0047 20.4 4.8 32 145-176 52-83 (139)
222 PRK13310 N-acetyl-D-glucosamin 25.8 75 0.0016 26.6 3.1 40 168-210 95-134 (303)
223 PRK13310 N-acetyl-D-glucosamin 25.1 3.9E+02 0.0085 22.3 7.4 22 201-222 2-23 (303)
224 PF00480 ROK: ROK family; Int 25.1 2.4E+02 0.0053 21.1 5.7 48 204-253 2-49 (179)
225 PF08735 DUF1786: Putative pyr 24.4 1.6E+02 0.0034 24.3 4.5 24 6-29 166-189 (254)
226 COG0248 GppA Exopolyphosphatas 24.3 1.6E+02 0.0035 26.9 5.1 26 199-224 3-28 (492)
227 PF00871 Acetate_kinase: Aceto 24.2 1.2E+02 0.0027 26.7 4.2 21 200-220 1-21 (388)
228 PF01150 GDA1_CD39: GDA1/CD39 24.1 1E+02 0.0022 27.6 3.7 24 197-220 6-29 (434)
229 COG4598 HisP ABC-type histidin 23.9 75 0.0016 24.9 2.4 36 149-184 148-183 (256)
230 PRK09557 fructokinase; Reviewe 23.8 4.3E+02 0.0093 22.0 7.5 22 201-222 2-23 (301)
231 PF07066 DUF3882: Lactococcus 23.6 1.2E+02 0.0026 22.6 3.3 21 8-28 3-28 (159)
232 TIGR03722 arch_KAE1 universal 22.3 4.9E+02 0.011 22.1 10.2 91 142-241 66-159 (322)
233 KOG1154 Gamma-glutamyl kinase 22.0 1.9E+02 0.004 23.7 4.3 58 128-185 100-158 (285)
234 PRK11031 guanosine pentaphosph 21.6 1.6E+02 0.0035 27.0 4.5 30 198-227 5-34 (496)
235 PF02075 RuvC: Crossover junct 21.0 3.5E+02 0.0077 20.0 6.2 30 201-230 1-30 (149)
236 PF00005 ABC_tran: ABC transpo 21.0 1.1E+02 0.0025 21.7 3.0 31 152-182 107-137 (137)
237 PF03630 Fumble: Fumble ; Int 20.7 89 0.0019 27.0 2.6 19 9-27 2-20 (341)
238 PRK14101 bifunctional glucokin 20.7 1.7E+02 0.0037 27.8 4.7 22 197-218 16-37 (638)
239 PRK07735 NADH dehydrogenase su 20.5 2.1E+02 0.0045 25.4 4.7 52 7-58 335-391 (430)
240 cd07035 TPP_PYR_POX_like Pyrim 20.5 2.1E+02 0.0045 21.0 4.4 63 144-213 12-74 (155)
241 TIGR03286 methan_mark_15 putat 20.4 4.1E+02 0.0088 23.7 6.5 21 197-217 142-162 (404)
242 TIGR00749 glk glucokinase, pro 20.1 80 0.0017 26.8 2.2 22 166-187 86-107 (316)
243 cd07037 TPP_PYR_MenD Pyrimidin 20.0 2.5E+02 0.0053 21.2 4.6 64 144-213 12-75 (162)
No 1
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-55 Score=356.76 Aligned_cols=270 Identities=70% Similarity=1.086 Sum_probs=260.6
Q ss_pred CCCEEEEEcCCcceEEEEEeCCceEEEecCCCCcccceEEEEcCCceeecHHHHhhhhhCcCcccccchhhcCCCCCChh
Q 036208 6 EGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDPS 85 (279)
Q Consensus 6 ~~~vvGID~Gt~~t~v~~~~~~~~~~v~~~~~~~~~ps~i~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~~l~~~~~~~~ 85 (279)
...|||||+||||++|+++.||.++++.|.+|+|.+||.++|.+.+|++|+.|..+...+|.+++.+.|+++|+.+++..
T Consensus 35 ~gtvigIdLGTTYsCVgV~kNgrvEIiANdQGNRItPSyVaFt~derLiGdAAKNQ~~~NPenTiFD~KRLIGr~~~d~~ 114 (663)
T KOG0100|consen 35 LGTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTDDERLIGDAAKNQLTSNPENTIFDAKRLIGRKFNDKS 114 (663)
T ss_pred cceEEEEecCCceeeEEEEeCCeEEEEecCCCCccccceeeeccchhhhhhHhhcccccCcccceechHHHhCcccCChh
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccccCCceEEecCCCcceEEEEeC-CceeeEeHHHHHHHHHHHHHHHHHHHhCCcccceEEeeCCCCCHHHHHHHHH
Q 036208 86 VQSDMKLWPFKVIAGAGDKPMIVVNYK-GEEKQFSAEEISSMVLNKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQATKD 164 (279)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~isvP~~~~~~~r~~l~~ 164 (279)
++.+.+.+||+++. .++++.+++..+ ++...++|+++-+++|..+.+.|+.+++..+.+.+++||+||.+.||++.++
T Consensus 115 vq~Dik~~Pfkvv~-k~~kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AEayLGkkv~~AVvTvPAYFNDAQrQATKD 193 (663)
T KOG0100|consen 115 VQKDIKFLPFKVVN-KDGKPYIQVKVGGGETKVFTPEEISAMILTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKD 193 (663)
T ss_pred hhhhhhcCceEEEc-CCCCccEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHhCCcccceEEecchhcchHHHhhhcc
Confidence 99999999999876 566999999988 5678899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceeeeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCCchhHHHHHHH
Q 036208 165 AGVISGLNVMRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMV 244 (279)
Q Consensus 165 a~~~ag~~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg~~id~~l~ 244 (279)
|-..||++.+++|.||+|||++|+..... ....+||+|+||||+|+|++.+..+.+++++.+++..+||.++|+++.
T Consensus 194 AGtIAgLnV~RIiNePTaAAIAYGLDKk~---gEknilVfDLGGGTFDVSlLtIdnGVFeVlaTnGDThLGGEDFD~rvm 270 (663)
T KOG0100|consen 194 AGTIAGLNVVRIINEPTAAAIAYGLDKKD---GEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVM 270 (663)
T ss_pred cceeccceEEEeecCccHHHHHhcccccC---CcceEEEEEcCCceEEEEEEEEcCceEEEEecCCCcccCccchHHHHH
Confidence 99999999999999999999999998873 678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhhhcC
Q 036208 245 NHFVQEFKRKNKKDISGNPRALRRLRTACERAKRT 279 (279)
Q Consensus 245 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~aK~~ 279 (279)
+|+.+.|+++.+++++.+.+++.+|+++||+||++
T Consensus 271 ~~fiklykkK~gkDv~kdnkA~~KLrRe~EkAKRa 305 (663)
T KOG0100|consen 271 EYFIKLYKKKHGKDVRKDNKAVQKLRREVEKAKRA 305 (663)
T ss_pred HHHHHHHhhhcCCccchhhHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999985
No 2
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=100.00 E-value=2.6e-50 Score=368.16 Aligned_cols=272 Identities=84% Similarity=1.252 Sum_probs=254.8
Q ss_pred CCCEEEEEcCCcceEEEEEeCCceEEEecCCCCcccceEEEEcCCceeecHHHHhhhhhCcCcccccchhhcCCCCCChh
Q 036208 6 EGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDPS 85 (279)
Q Consensus 6 ~~~vvGID~Gt~~t~v~~~~~~~~~~v~~~~~~~~~ps~i~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~~l~~~~~~~~ 85 (279)
+..+|||||||+|++|+++.++.++++.|..+++.+||+|+|.++.+++|..|..+..++|.+++.++|+++|+.++++.
T Consensus 3 ~~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 82 (653)
T PTZ00009 3 KGPAIGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDSV 82 (653)
T ss_pred cccEEEEEeCcccEEEEEEeCCceEEEECCCCCccCCcEEEECCCCEEEcHHHHHhhhhCcccEEhhhHHHhCCCCCchh
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccccCCceEEecCCCcceEEEEeCCceeeEeHHHHHHHHHHHHHHHHHHHhCCcccceEEeeCCCCCHHHHHHHHHH
Q 036208 86 VQSDMKLWPFKVIAGAGDKPMIVVNYKGEEKQFSAEEISSMVLNKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQATKDA 165 (279)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~isvP~~~~~~~r~~l~~a 165 (279)
++...+.+++.+..+.++...+.+.+.+....++|+++.+++|++|++.++.+++..+..++||||++|+..||+++++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~A 162 (653)
T PTZ00009 83 VQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDA 162 (653)
T ss_pred HhhhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHHHHHHHHHHHHHHHHhCCCcceeEEEeCCCCCHHHHHHHHHH
Confidence 99988999999888888888899988887788999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeeeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCCchhHHHHHHHH
Q 036208 166 GVISGLNVMRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVN 245 (279)
Q Consensus 166 ~~~ag~~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~ 245 (279)
++.||++.+.+++||+|||++|...... .....++|+|+||||+|++++++.++.+++++..++..+||.+||..|++
T Consensus 163 a~~AGl~v~~li~EptAAAl~y~~~~~~--~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~a~~gd~~lGG~d~D~~l~~ 240 (653)
T PTZ00009 163 GTIAGLNVLRIINEPTAAAIAYGLDKKG--DGEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVE 240 (653)
T ss_pred HHHcCCceeEEecchHHHHHHHhhhccC--CCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCCChHHHHHHHHH
Confidence 9999999999999999999999876542 24678999999999999999999999999999999899999999999999
Q ss_pred HHHHHHHhhh-CCCCCCCHHHHHHHHHHHHhhhcC
Q 036208 246 HFVQEFKRKN-KKDISGNPRALRRLRTACERAKRT 279 (279)
Q Consensus 246 ~l~~~~~~~~-~~~~~~~~~~~~~l~~~~~~aK~~ 279 (279)
|+.+++.+++ +.++..+++.+.+|+++||+||+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~ 275 (653)
T PTZ00009 241 FCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRT 275 (653)
T ss_pred HHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHh
Confidence 9999998876 467778899999999999999974
No 3
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=100.00 E-value=1.2e-49 Score=361.15 Aligned_cols=267 Identities=53% Similarity=0.874 Sum_probs=247.7
Q ss_pred CCCEEEEEcCCcceEEEEEeCCceEEEecCCCCcccceEEEEcCCceeecHHHHhhhhhCcCcccccchhhcCCCCCChh
Q 036208 6 EGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDPS 85 (279)
Q Consensus 6 ~~~vvGID~Gt~~t~v~~~~~~~~~~v~~~~~~~~~ps~i~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~~l~~~~~~~~ 85 (279)
...+|||||||||++|++++++.++++.+..|.+.+||+|+|.++.+++|..|..+...+|.+++..+|+++|+.++++.
T Consensus 26 ~~~viGIDLGTTnS~vA~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~~d~~ 105 (657)
T PTZ00186 26 QGDVIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKGSEKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDEH 105 (657)
T ss_pred cceEEEEEeCcCeEEEEEEeCCceEEeecCCCCcccceEEEECCCCEEEcHHHHHhhhhCchhHHHHHHHHhccccccHH
Confidence 34699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccccCCceEEecCCCcceEEEEeCCceeeEeHHHHHHHHHHHHHHHHHHHhCCcccceEEeeCCCCCHHHHHHHHHH
Q 036208 86 VQSDMKLWPFKVIAGAGDKPMIVVNYKGEEKQFSAEEISSMVLNKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQATKDA 165 (279)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~isvP~~~~~~~r~~l~~a 165 (279)
++.....+|+.+..+.++...+.. .....++|+++.+.+|++|++.++.+++.++..++||||++|++.||+++++|
T Consensus 106 v~~~~~~~p~~vv~~~~~~~~i~~---~~~~~~speeisa~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~~~qR~at~~A 182 (657)
T PTZ00186 106 IQKDIKNVPYKIVRAGNGDAWVQD---GNGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDA 182 (657)
T ss_pred HHHhhccCcEEEEEcCCCceEEEe---CCCeEEcHHHHHHHHHHHHHHHHHHHhCCccceEEEEECCCCChHHHHHHHHH
Confidence 999999999998877666554432 22467999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeeeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCCchhHHHHHHHH
Q 036208 166 GVISGLNVMRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVN 245 (279)
Q Consensus 166 ~~~ag~~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~ 245 (279)
++.||++.+.+++||+|||++|..... ....++|+|+||||||++++++.++.+++++..++..+||.+||..|.+
T Consensus 183 a~~AGl~v~rlInEPtAAAlayg~~~~----~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at~Gd~~LGG~DfD~~l~~ 258 (657)
T PTZ00186 183 GTIAGLNVIRVVNEPTAAALAYGMDKT----KDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALSD 258 (657)
T ss_pred HHHcCCCeEEEEcChHHHHHHHhccCC----CCCEEEEEECCCCeEEEEEEEEeCCEEEEEEecCCCCCCchhHHHHHHH
Confidence 999999999999999999999987654 5679999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCCCCCHHHHHHHHHHHHhhhcC
Q 036208 246 HFVQEFKRKNKKDISGNPRALRRLRTACERAKRT 279 (279)
Q Consensus 246 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~aK~~ 279 (279)
|+.++|.++++.++..+++.+.+|+++||+||+.
T Consensus 259 ~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~ 292 (657)
T PTZ00186 259 YILEEFRKTSGIDLSKERMALQRVREAAEKAKCE 292 (657)
T ss_pred HHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHH
Confidence 9999999999888888899999999999999973
No 4
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=100.00 E-value=1.5e-49 Score=363.10 Aligned_cols=266 Identities=53% Similarity=0.880 Sum_probs=246.5
Q ss_pred CCCEEEEEcCCcceEEEEEeCCceEEEecCCCCcccceEEEEcC-CceeecHHHHhhhhhCcCcccccchhhcCCCCCCh
Q 036208 6 EGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTD-TERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDP 84 (279)
Q Consensus 6 ~~~vvGID~Gt~~t~v~~~~~~~~~~v~~~~~~~~~ps~i~~~~-~~~~~G~~a~~~~~~~~~~~~~~~k~~l~~~~~~~ 84 (279)
...+|||||||+|++|+++.++.++++.+..|++.+||+|+|.+ +.+++|..|..+..++|.+++.++|+++|+.++++
T Consensus 40 ~~~viGIDlGTt~s~va~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~ 119 (663)
T PTZ00400 40 TGDIVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRYDED 119 (663)
T ss_pred cCcEEEEEECcccEEEEEEeCCeeEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcCCCcCcH
Confidence 34699999999999999999999999999999999999999974 68999999999999999999999999999999999
Q ss_pred hHhhccccCCceEEecCCCcceEEEEeCCceeeEeHHHHHHHHHHHHHHHHHHHhCCcccceEEeeCCCCCHHHHHHHHH
Q 036208 85 SVQSDMKLWPFKVIAGAGDKPMIVVNYKGEEKQFSAEEISSMVLNKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQATKD 164 (279)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~isvP~~~~~~~r~~l~~ 164 (279)
.++.....+|+.+..+.++...+.+ . +..++|+++.+++|++|++.++.+++.++..++||||++|++.||+++++
T Consensus 120 ~~~~~~~~~p~~~~~~~~~~~~~~~--~--~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~ 195 (663)
T PTZ00400 120 ATKKEQKILPYKIVRASNGDAWIEA--Q--GKKYSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKD 195 (663)
T ss_pred HHHhhhccCCeEEEecCCCceEEEE--C--CEEECHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHH
Confidence 8888888999998877666655554 2 46899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceeeeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCCchhHHHHHHH
Q 036208 165 AGVISGLNVMRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMV 244 (279)
Q Consensus 165 a~~~ag~~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg~~id~~l~ 244 (279)
|++.||++.+.+++||+|||++|..... .+..++|+|+||||+|++++++.++.+++++..++..+||.+||..|.
T Consensus 196 Aa~~AGl~v~~li~EptAAAlay~~~~~----~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~a~~gd~~LGG~d~D~~l~ 271 (663)
T PTZ00400 196 AGKIAGLDVLRIINEPTAAALAFGMDKN----DGKTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRIL 271 (663)
T ss_pred HHHHcCCceEEEeCchHHHHHHhccccC----CCcEEEEEeCCCCeEEEEEEEecCCeeEEEecccCCCcCHHHHHHHHH
Confidence 9999999999999999999999987654 578999999999999999999999999999999989999999999999
Q ss_pred HHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhhhcC
Q 036208 245 NHFVQEFKRKNKKDISGNPRALRRLRTACERAKRT 279 (279)
Q Consensus 245 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~aK~~ 279 (279)
+|+.++|.++++.++..+++.+.+|+++||+||+.
T Consensus 272 ~~l~~~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~ 306 (663)
T PTZ00400 272 NYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIE 306 (663)
T ss_pred HHHHHHhhhhcCCCcccCHHHHHHHHHHHHHHHHH
Confidence 99999999988888888999999999999999973
No 5
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=100.00 E-value=3.2e-49 Score=362.37 Aligned_cols=267 Identities=52% Similarity=0.887 Sum_probs=246.7
Q ss_pred EEEEEcCCcceEEEEEeCCceEEEecCCCCcccceEEEEcCCceeecHHHHhhhhhCcCcccccchhhcCCCCCChhHhh
Q 036208 9 AIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDPSVQS 88 (279)
Q Consensus 9 vvGID~Gt~~t~v~~~~~~~~~~v~~~~~~~~~ps~i~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~~l~~~~~~~~~~~ 88 (279)
||||||||++++||++.++.++++.+..|+|.+||+|+|.++++++|..|.....++|.+++.++|+++|+..+++.++.
T Consensus 1 viGID~Gt~~~~va~~~~~~~~ii~~~~~~~~~ps~v~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~~~~~ 80 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKNGKPEIILNEEGKRKTPSVVSFSDNERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDPDVQK 80 (602)
T ss_dssp EEEEEE-SSEEEEEEEETTEEEEE--TTS-SSEESEEEEESSCEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSHHHHH
T ss_pred CEEEEeccCCEEEEEEEeccccccccccccccccceeeEeeecccCCcchhhhcccccccccccccccccccccccccch
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCceEEecCCCcceEEEEeCCceeeEeHHHHHHHHHHHHHHHHHHHhCCcccceEEeeCCCCCHHHHHHHHHHHHH
Q 036208 89 DMKLWPFKVIAGAGDKPMIVVNYKGEEKQFSAEEISSMVLNKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQATKDAGVI 168 (279)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~isvP~~~~~~~r~~l~~a~~~ 168 (279)
....+++.+..+.++...+.+.+.+....++|+++++++|+++++.++.+++..+..+++|||++|+..||+++++|++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~Aa~~ 160 (602)
T PF00012_consen 81 EKKKFPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQALRDAAEL 160 (602)
T ss_dssp HHTTSSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHHHHHHHHH
T ss_pred hhhcccccccccccccccccccccccceeeeeecccccchhhhcccchhhcccccccceeeechhhhhhhhhcccccccc
Confidence 99999999998888999999999888889999999999999999999999999889999999999999999999999999
Q ss_pred cCCceeeeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCCchhHHHHHHHHHHH
Q 036208 169 SGLNVMRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFV 248 (279)
Q Consensus 169 ag~~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~ 248 (279)
||++.+.+++||+|||++|...... .+..+||||+||||+|++++++.++.+++++..++..+||.+||..|++++.
T Consensus 161 agl~~~~li~Ep~Aaa~~y~~~~~~---~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~~~ 237 (602)
T PF00012_consen 161 AGLNVLRLINEPTAAALAYGLERSD---KGKTVLVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGRDFDEALAEYLL 237 (602)
T ss_dssp TT-EEEEEEEHHHHHHHHTTTTSSS---SEEEEEEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHH
T ss_pred cccccceeecccccccccccccccc---cccceeccccccceEeeeehhcccccccccccccccccccceecceeecccc
Confidence 9999999999999999999876663 6889999999999999999999999999999988899999999999999999
Q ss_pred HHHHhhhCCCCCCCHHHHHHHHHHHHhhhc
Q 036208 249 QEFKRKNKKDISGNPRALRRLRTACERAKR 278 (279)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~l~~~~~~aK~ 278 (279)
++++++++.++..+++.+.+|+.+|+++|+
T Consensus 238 ~~~~~~~~~d~~~~~~~~~~L~~~~e~~K~ 267 (602)
T PF00012_consen 238 EKFKKKYKIDLRENPRAMARLLEAAEKAKE 267 (602)
T ss_dssp HHHHHHHSS-GTCSHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccc
Confidence 999999988888999999999999999997
No 6
>PRK13410 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=5.6e-49 Score=358.36 Aligned_cols=264 Identities=51% Similarity=0.824 Sum_probs=240.7
Q ss_pred CEEEEEcCCcceEEEEEeCCceEEEecCCCCcccceEEEEc-CCceeecHHHHhhhhhCcCcccccchhhcCCCCCChhH
Q 036208 8 PAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDPSV 86 (279)
Q Consensus 8 ~vvGID~Gt~~t~v~~~~~~~~~~v~~~~~~~~~ps~i~~~-~~~~~~G~~a~~~~~~~~~~~~~~~k~~l~~~~~~~~~ 86 (279)
.+|||||||+|++||++.+|.+.++.|..|.+.+||+|+|. ++++++|..|..+...+|.+++.++|+++|++..+ +
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~--~ 80 (668)
T PRK13410 3 RIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDE--L 80 (668)
T ss_pred cEEEEEeCCCcEEEEEEECCeEEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCchh--h
Confidence 69999999999999999999999999999999999999997 46899999999999999999999999999998755 3
Q ss_pred hhccccCCceEEecCCCcceEEEEeCCceeeEeHHHHHHHHHHHHHHHHHHHhCCcccceEEeeCCCCCHHHHHHHHHHH
Q 036208 87 QSDMKLWPFKVIAGAGDKPMIVVNYKGEEKQFSAEEISSMVLNKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQATKDAG 166 (279)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~isvP~~~~~~~r~~l~~a~ 166 (279)
+.....+|+.+..+..+...+.+ ......++|+++++++|++|++.++.+++.++..++||||++|+..||+++++|+
T Consensus 81 ~~~~~~~~~~v~~~~~g~~~i~~--~~~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa 158 (668)
T PRK13410 81 DPESKRVPYTIRRNEQGNVRIKC--PRLEREFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAG 158 (668)
T ss_pred HHhhccCCeEEEECCCCcEEEEE--ecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHH
Confidence 34456778888777666555544 3345789999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeeeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCCchhHHHHHHHHH
Q 036208 167 VISGLNVMRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNH 246 (279)
Q Consensus 167 ~~ag~~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~ 246 (279)
+.||++.+.+++||+|||++|..... ....+||||+||||+|++++++.++.+++++..++..+||.+||..|.+|
T Consensus 159 ~~AGl~v~~li~EPtAAAlayg~~~~----~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~l~~~ 234 (668)
T PRK13410 159 RIAGLEVERILNEPTAAALAYGLDRS----SSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVDW 234 (668)
T ss_pred HHcCCCeEEEecchHHHHHHhccccC----CCCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHHHHHHH
Confidence 99999999999999999999987654 56799999999999999999999999999999998999999999999999
Q ss_pred HHHHHHhhhCCCCCCCHHHHHHHHHHHHhhhcC
Q 036208 247 FVQEFKRKNKKDISGNPRALRRLRTACERAKRT 279 (279)
Q Consensus 247 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~aK~~ 279 (279)
+.++|.++++.+++.+++.+.+|+++||+||+.
T Consensus 235 l~~~f~~~~~~d~~~~~~a~~rL~~~aEkaK~~ 267 (668)
T PRK13410 235 LAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIE 267 (668)
T ss_pred HHHHHHhhhCCCcccCHHHHHHHHHHHHHHHHh
Confidence 999999988888888999999999999999973
No 7
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=100.00 E-value=1e-48 Score=357.52 Aligned_cols=262 Identities=56% Similarity=0.932 Sum_probs=241.4
Q ss_pred CEEEEEcCCcceEEEEEeCCceEEEecCCCCcccceEEEEc-CCceeecHHHHhhhhhCcCcccccchhhcCCCCCChhH
Q 036208 8 PAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDPSV 86 (279)
Q Consensus 8 ~vvGID~Gt~~t~v~~~~~~~~~~v~~~~~~~~~ps~i~~~-~~~~~~G~~a~~~~~~~~~~~~~~~k~~l~~~~~~~~~ 86 (279)
.+|||||||+|+++|++.+|.++++.+..|++.+||+|+|. ++.+++|..|..+..++|.+++.++|+++|+. ++.+
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~--~~~~ 80 (627)
T PRK00290 3 KIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRR--DEEV 80 (627)
T ss_pred cEEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCC--chHH
Confidence 69999999999999999999999999999999999999997 67899999999999999999999999999998 5556
Q ss_pred hhccccCCceEEecCCCcceEEEEeCCceeeEeHHHHHHHHHHHHHHHHHHHhCCcccceEEeeCCCCCHHHHHHHHHHH
Q 036208 87 QSDMKLWPFKVIAGAGDKPMIVVNYKGEEKQFSAEEISSMVLNKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQATKDAG 166 (279)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~isvP~~~~~~~r~~l~~a~ 166 (279)
+...+.+|+.+....++...+. +++ ..++|+++.+++|++|++.++.+++.++..++||||++|+..||+++++|+
T Consensus 81 ~~~~~~~p~~~~~~~~~~~~~~--~~~--~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~Aa 156 (627)
T PRK00290 81 QKDIKLVPYKIVKADNGDAWVE--IDG--KKYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAG 156 (627)
T ss_pred HHHhhcCCeEEEEcCCCceEEE--ECC--EEEcHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHH
Confidence 7777889999887766555544 333 679999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeeeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCCchhHHHHHHHHH
Q 036208 167 VISGLNVMRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNH 246 (279)
Q Consensus 167 ~~ag~~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~ 246 (279)
+.||++.+.+++||+|||++|..... ....+||||+||||||++++++.++.+++++..++..+||.+||..|++|
T Consensus 157 ~~AGl~v~~li~EptAAAl~y~~~~~----~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~ 232 (627)
T PRK00290 157 KIAGLEVLRIINEPTAAALAYGLDKK----GDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIIDY 232 (627)
T ss_pred HHcCCceEEEecchHHHHHHhhhccC----CCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHHHHHHH
Confidence 99999999999999999999987654 56889999999999999999999999999999998999999999999999
Q ss_pred HHHHHHhhhCCCCCCCHHHHHHHHHHHHhhhcC
Q 036208 247 FVQEFKRKNKKDISGNPRALRRLRTACERAKRT 279 (279)
Q Consensus 247 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~aK~~ 279 (279)
+.++|.++++.++..+++.+.+|+++||+||+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~rL~~~ae~aK~~ 265 (627)
T PRK00290 233 LADEFKKENGIDLRKDKMALQRLKEAAEKAKIE 265 (627)
T ss_pred HHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHH
Confidence 999999999888888999999999999999973
No 8
>PRK13411 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=2.2e-48 Score=355.18 Aligned_cols=263 Identities=52% Similarity=0.869 Sum_probs=239.2
Q ss_pred CEEEEEcCCcceEEEEEeCCceEEEecCCCCcccceEEEEcC-CceeecHHHHhhhhhCcCcccccchhhcCCCCCChhH
Q 036208 8 PAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTD-TERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDPSV 86 (279)
Q Consensus 8 ~vvGID~Gt~~t~v~~~~~~~~~~v~~~~~~~~~ps~i~~~~-~~~~~G~~a~~~~~~~~~~~~~~~k~~l~~~~~~~~~ 86 (279)
.+|||||||+|++||++.+|.+.++.|..|++.+||+|+|.+ +++++|..|..+...+|.+++.++|+++|+...+...
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~ 82 (653)
T PRK13411 3 KVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDDTEE 82 (653)
T ss_pred cEEEEEeCcccEEEEEEECCEEEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCccchhH
Confidence 599999999999999999999999999999999999999975 5899999999999999999999999999999877643
Q ss_pred hhccccCCceEEecCCCcceEEEEeCCceeeEeHHHHHHHHHHHHHHHHHHHhCCcccceEEeeCCCCCHHHHHHHHHHH
Q 036208 87 QSDMKLWPFKVIAGAGDKPMIVVNYKGEEKQFSAEEISSMVLNKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQATKDAG 166 (279)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~isvP~~~~~~~r~~l~~a~ 166 (279)
....+|+......++...+.+ . ...++|+++.+++|++|++.++.+++.++..++||||++|+..||+++++|+
T Consensus 83 --~~~~~~~~~v~~~~~~~~~~i--~--~~~~~peei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa 156 (653)
T PRK13411 83 --ERSRVPYTCVKGRDDTVNVQI--R--GRNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAG 156 (653)
T ss_pred --HhhcCCceEEecCCCceEEEE--C--CEEECHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCcHHHHHHHHHH
Confidence 456788888776665544444 3 3579999999999999999999999998999999999999999999999999
Q ss_pred HHcCCceeeeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCCchhHHHHHHHHH
Q 036208 167 VISGLNVMRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNH 246 (279)
Q Consensus 167 ~~ag~~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~ 246 (279)
+.||++.+.+++||+|||++|..... .....++|+|+||||+|++++++.++.+++++..++..+||.+||+.|.+|
T Consensus 157 ~~AGl~v~~li~EPtAAAl~y~~~~~---~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~dfD~~l~~~ 233 (653)
T PRK13411 157 TIAGLEVLRIINEPTAAALAYGLDKQ---DQEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDW 233 (653)
T ss_pred HHcCCCeEEEecchHHHHHHhccccc---CCCCEEEEEEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHHHHHHHHHHH
Confidence 99999999999999999999987654 246789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCCCCHHHHHHHHHHHHhhhcC
Q 036208 247 FVQEFKRKNKKDISGNPRALRRLRTACERAKRT 279 (279)
Q Consensus 247 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~aK~~ 279 (279)
+.++|.++++.++..+++.+.||+++||+||+.
T Consensus 234 l~~~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~ 266 (653)
T PRK13411 234 LVENFQQQEGIDLSQDKMALQRLREAAEKAKIE 266 (653)
T ss_pred HHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHh
Confidence 999999988888888999999999999999973
No 9
>PLN03184 chloroplast Hsp70; Provisional
Probab=100.00 E-value=3e-48 Score=354.62 Aligned_cols=265 Identities=49% Similarity=0.799 Sum_probs=241.3
Q ss_pred CCEEEEEcCCcceEEEEEeCCceEEEecCCCCcccceEEEEcC-CceeecHHHHhhhhhCcCcccccchhhcCCCCCChh
Q 036208 7 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTD-TERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDPS 85 (279)
Q Consensus 7 ~~vvGID~Gt~~t~v~~~~~~~~~~v~~~~~~~~~ps~i~~~~-~~~~~G~~a~~~~~~~~~~~~~~~k~~l~~~~~~~~ 85 (279)
..+|||||||+|++++++.+|.++++.|..|++.+||+|+|.+ +.+++|..|..+...+|.+++.++|+++|+...+.
T Consensus 39 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~- 117 (673)
T PLN03184 39 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEV- 117 (673)
T ss_pred CCEEEEEeCcCcEEEEEEECCeEEEEECCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhCCCcchh-
Confidence 4699999999999999999999999999999999999999974 57999999999999999999999999999988653
Q ss_pred HhhccccCCceEEecCCCcceEEEEeCCceeeEeHHHHHHHHHHHHHHHHHHHhCCcccceEEeeCCCCCHHHHHHHHHH
Q 036208 86 VQSDMKLWPFKVIAGAGDKPMIVVNYKGEEKQFSAEEISSMVLNKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQATKDA 165 (279)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~isvP~~~~~~~r~~l~~a 165 (279)
+.....+++.+..+.++...+.+... ...++++++.+++|++|++.++.+++.++..++||||++|++.||+++++|
T Consensus 118 -~~~~~~~~~~v~~~~~~~v~~~~~~~--~~~~speei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 194 (673)
T PLN03184 118 -DEESKQVSYRVVRDENGNVKLDCPAI--GKQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDA 194 (673)
T ss_pred -hhhhhcCCeEEEecCCCcEEEEEecC--CeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 45566678888877666665555443 357999999999999999999999998899999999999999999999999
Q ss_pred HHHcCCceeeeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCCchhHHHHHHHH
Q 036208 166 GVISGLNVMRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVN 245 (279)
Q Consensus 166 ~~~ag~~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~ 245 (279)
++.||++.+.+++||+|||++|..... ....+||+|+||||+|++++++.++.+++++..++..+||.+||+.|++
T Consensus 195 a~~AGl~v~~li~EPtAAAlayg~~~~----~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~L~~ 270 (673)
T PLN03184 195 GRIAGLEVLRIINEPTAASLAYGFEKK----SNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVD 270 (673)
T ss_pred HHHCCCCeEEEeCcHHHHHHHhhcccC----CCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHHHHH
Confidence 999999999999999999999987654 5678999999999999999999999999999999899999999999999
Q ss_pred HHHHHHHhhhCCCCCCCHHHHHHHHHHHHhhhcC
Q 036208 246 HFVQEFKRKNKKDISGNPRALRRLRTACERAKRT 279 (279)
Q Consensus 246 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~aK~~ 279 (279)
|+.++|..+++.++..+++.+.||+.+||+||+.
T Consensus 271 ~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~ 304 (673)
T PLN03184 271 WLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIE 304 (673)
T ss_pred HHHHHHHhhcCCCcccCHHHHHHHHHHHHHHHHh
Confidence 9999999998888888999999999999999973
No 10
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=100.00 E-value=6.6e-48 Score=351.10 Aligned_cols=262 Identities=55% Similarity=0.909 Sum_probs=237.1
Q ss_pred CEEEEEcCCcceEEEEEeCCceEEEecCCCCcccceEEEEcCC-ceeecHHHHhhhhhCcCcccccchhhcCCCCCChhH
Q 036208 8 PAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDPSV 86 (279)
Q Consensus 8 ~vvGID~Gt~~t~v~~~~~~~~~~v~~~~~~~~~ps~i~~~~~-~~~~G~~a~~~~~~~~~~~~~~~k~~l~~~~~~~~~ 86 (279)
.+|||||||+++++|++.+|.+.++.+..|++.+||+|+|.++ .+++|..|..+...+|.+++.++|+++|.... .+
T Consensus 1 ~viGIDlGtt~s~va~~~~g~~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~--~~ 78 (595)
T TIGR02350 1 KIIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRFD--EV 78 (595)
T ss_pred CEEEEEeCcccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCch--HH
Confidence 3899999999999999999999999999999999999999854 89999999999999999999999999999873 35
Q ss_pred hhccccCCceEEecCCCcceEEEEeCCceeeEeHHHHHHHHHHHHHHHHHHHhCCcccceEEeeCCCCCHHHHHHHHHHH
Q 036208 87 QSDMKLWPFKVIAGAGDKPMIVVNYKGEEKQFSAEEISSMVLNKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQATKDAG 166 (279)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~isvP~~~~~~~r~~l~~a~ 166 (279)
+...+.+|+. ....++...+.+ + +..++|+++.+++|++|++.++.+++.++..++||||++|+..||+++++|+
T Consensus 79 ~~~~~~~~~~-v~~~~~~~~~~v--~--~~~~~peel~a~~L~~l~~~a~~~~~~~v~~~VItVPa~f~~~qR~a~~~Aa 153 (595)
T TIGR02350 79 TEEAKRVPYK-VVGDGGDVRVKV--D--GKEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAG 153 (595)
T ss_pred HHHhhcCCee-EEcCCCceEEEE--C--CEEecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 5566778888 444555545444 3 3679999999999999999999999998999999999999999999999999
Q ss_pred HHcCCceeeeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCCchhHHHHHHHHH
Q 036208 167 VISGLNVMRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNH 246 (279)
Q Consensus 167 ~~ag~~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~ 246 (279)
+.||++.+.+++||+|||++|..... ..+..++|||+||||+|++++++.++.+++++..++..+||.+||+.|++|
T Consensus 154 ~~AGl~v~~li~EptAAAl~y~~~~~---~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~~l~~~ 230 (595)
T TIGR02350 154 KIAGLEVLRIINEPTAAALAYGLDKS---KKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDW 230 (595)
T ss_pred HHcCCceEEEecchHHHHHHHhhccc---CCCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHHHHHHH
Confidence 99999999999999999999987653 257899999999999999999999999999999998999999999999999
Q ss_pred HHHHHHhhhCCCCCCCHHHHHHHHHHHHhhhcC
Q 036208 247 FVQEFKRKNKKDISGNPRALRRLRTACERAKRT 279 (279)
Q Consensus 247 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~aK~~ 279 (279)
+.++|.++++.++..+++.+.+|+++||+||++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~ 263 (595)
T TIGR02350 231 LADEFKKEEGIDLSKDKMALQRLKEAAEKAKIE 263 (595)
T ss_pred HHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHH
Confidence 999999999888888999999999999999973
No 11
>CHL00094 dnaK heat shock protein 70
Probab=100.00 E-value=2.7e-47 Score=347.23 Aligned_cols=264 Identities=53% Similarity=0.844 Sum_probs=239.2
Q ss_pred CEEEEEcCCcceEEEEEeCCceEEEecCCCCcccceEEEEcC-CceeecHHHHhhhhhCcCcccccchhhcCCCCCChhH
Q 036208 8 PAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTD-TERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDPSV 86 (279)
Q Consensus 8 ~vvGID~Gt~~t~v~~~~~~~~~~v~~~~~~~~~ps~i~~~~-~~~~~G~~a~~~~~~~~~~~~~~~k~~l~~~~~~~~~ 86 (279)
.+|||||||+++++|++.+|.+.++.|..|++.+||+|+|.+ +.+++|..|..+...+|.+++.++|+++|+...+ .
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~--~ 80 (621)
T CHL00094 3 KVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSE--I 80 (621)
T ss_pred ceEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHH--H
Confidence 699999999999999999999999999999999999999975 5799999999999999999999999999998754 3
Q ss_pred hhccccCCceEEecCCCcceEEEEeCCceeeEeHHHHHHHHHHHHHHHHHHHhCCcccceEEeeCCCCCHHHHHHHHHHH
Q 036208 87 QSDMKLWPFKVIAGAGDKPMIVVNYKGEEKQFSAEEISSMVLNKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQATKDAG 166 (279)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~isvP~~~~~~~r~~l~~a~ 166 (279)
......+++.+..+..+...+.+... ...++++++.+.+|+++++.++.+++.++..++||||++|++.||+++++|+
T Consensus 81 ~~~~~~~~~~v~~~~~g~i~~~~~~~--~~~~s~eei~a~iL~~l~~~ae~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa 158 (621)
T CHL00094 81 SEEAKQVSYKVKTDSNGNIKIECPAL--NKDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAG 158 (621)
T ss_pred HhhhhcCCeEEEECCCCCEEEEEecC--CeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 44556688888776666555554333 3578999999999999999999999888899999999999999999999999
Q ss_pred HHcCCceeeeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCCchhHHHHHHHHH
Q 036208 167 VISGLNVMRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNH 246 (279)
Q Consensus 167 ~~ag~~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~ 246 (279)
+.||++.+.+++||+|||++|..... .+..++|+|+||||+|++++++.++.+++++..++..+||.+||..|++|
T Consensus 159 ~~AGl~v~~li~EptAAAlay~~~~~----~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~ 234 (621)
T CHL00094 159 KIAGLEVLRIINEPTAASLAYGLDKK----NNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNW 234 (621)
T ss_pred HHcCCceEEEeccHHHHHHHhccccC----CCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHHHHHH
Confidence 99999999999999999999987654 56789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCCCCHHHHHHHHHHHHhhhcC
Q 036208 247 FVQEFKRKNKKDISGNPRALRRLRTACERAKRT 279 (279)
Q Consensus 247 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~aK~~ 279 (279)
+.++|.++++.++..+++.+.+|+.+||+||+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~ 267 (621)
T CHL00094 235 LIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIE 267 (621)
T ss_pred HHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHh
Confidence 999999999888888999999999999999973
No 12
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=1.5e-46 Score=341.05 Aligned_cols=260 Identities=41% Similarity=0.657 Sum_probs=231.4
Q ss_pred CCCEEEEEcCCcceEEEEEeCCceEEEecCCCCcccceEEEEcCCceeecHHHHhhhhhCcCcccccchhhcCCCCCChh
Q 036208 6 EGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDPS 85 (279)
Q Consensus 6 ~~~vvGID~Gt~~t~v~~~~~~~~~~v~~~~~~~~~ps~i~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~~l~~~~~~~~ 85 (279)
...+|||||||||++||++.+|.++++.+..|++.+||+|+|.++.+++|..|..+...+|.+++.++|+++|+...+.
T Consensus 18 ~~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~- 96 (616)
T PRK05183 18 RRLAVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLEDGIEVGYEARANAAQDPKNTISSVKRFMGRSLADI- 96 (616)
T ss_pred CCeEEEEEeccccEEEEEEECCEEEEEEcCCCCeecCeEEEEcCCCEEEcHHHHHhhHhCchhhHHHHHHHhCCCchhh-
Confidence 3479999999999999999999999999999999999999999888999999999999999999999999999987653
Q ss_pred HhhccccCCceEEecCCCcceEEEEeCCceeeEeHHHHHHHHHHHHHHHHHHHhCCcccceEEeeCCCCCHHHHHHHHHH
Q 036208 86 VQSDMKLWPFKVIAGAGDKPMIVVNYKGEEKQFSAEEISSMVLNKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQATKDA 165 (279)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~isvP~~~~~~~r~~l~~a 165 (279)
+.....+|+.+....++...+.+. + ..++|+++.+.+|++|++.++.+++.++..++||||++|++.||+++++|
T Consensus 97 -~~~~~~~~~~~~~~~~g~~~~~~~--~--~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 171 (616)
T PRK05183 97 -QQRYPHLPYQFVASENGMPLIRTA--Q--GLKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDA 171 (616)
T ss_pred -hhhhhcCCeEEEecCCCceEEEec--C--CeEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHH
Confidence 333455677776665555555542 2 26899999999999999999999999899999999999999999999999
Q ss_pred HHHcCCceeeeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCCchhHHHHHHHH
Q 036208 166 GVISGLNVMRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVN 245 (279)
Q Consensus 166 ~~~ag~~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~ 245 (279)
++.||++.+.+++||+|||++|..... ....++|+|+||||+|++++++.++.+++++..++..+||.+||+.|++
T Consensus 172 a~~AGl~v~~li~EPtAAAlay~~~~~----~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l~~ 247 (616)
T PRK05183 172 ARLAGLNVLRLLNEPTAAAIAYGLDSG----QEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLAD 247 (616)
T ss_pred HHHcCCCeEEEecchHHHHHHhhcccC----CCCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHHHHH
Confidence 999999999999999999999987654 4678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCCCCCHHHHHHHHHHHHhhhcC
Q 036208 246 HFVQEFKRKNKKDISGNPRALRRLRTACERAKRT 279 (279)
Q Consensus 246 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~aK~~ 279 (279)
|+.++++ .+...+++.+.+|+++||+||+.
T Consensus 248 ~~~~~~~----~~~~~~~~~~~~L~~~ae~aK~~ 277 (616)
T PRK05183 248 WILEQAG----LSPRLDPEDQRLLLDAARAAKEA 277 (616)
T ss_pred HHHHHcC----CCcCCCHHHHHHHHHHHHHHHHh
Confidence 9987664 33446789999999999999973
No 13
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=100.00 E-value=2.6e-46 Score=338.87 Aligned_cols=256 Identities=42% Similarity=0.672 Sum_probs=228.6
Q ss_pred EEEEEcCCcceEEEEEeCCceEEEecCCCCcccceEEEEcCC-ceeecHHHHhhhhhCcCcccccchhhcCCCCCChhHh
Q 036208 9 AIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDPSVQ 87 (279)
Q Consensus 9 vvGID~Gt~~t~v~~~~~~~~~~v~~~~~~~~~ps~i~~~~~-~~~~G~~a~~~~~~~~~~~~~~~k~~l~~~~~~~~~~ 87 (279)
+|||||||||++||++.+|.++++.+..|++.+||+|+|.++ .+++|..|..+...+|.+++..+|+++|+...+...
T Consensus 1 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~~- 79 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDIKT- 79 (599)
T ss_pred CEEEEEccccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccchhh-
Confidence 589999999999999999999999999999999999999754 899999999999999999999999999998766432
Q ss_pred hccccCCceEEecCCCcceEEEEeCCceeeEeHHHHHHHHHHHHHHHHHHHhCCcccceEEeeCCCCCHHHHHHHHHHHH
Q 036208 88 SDMKLWPFKVIAGAGDKPMIVVNYKGEEKQFSAEEISSMVLNKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQATKDAGV 167 (279)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~isvP~~~~~~~r~~l~~a~~ 167 (279)
...+|+.+....++...+.+. + ..++|+++.+.+|++|++.++.+++.++..++||||++|++.||+++++|++
T Consensus 80 --~~~~~~~~~~~~~~~~~~~~~--~--~~~~p~ei~a~iL~~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~ 153 (599)
T TIGR01991 80 --FSILPYRFVDGPGEMVRLRTV--Q--GTVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAAR 153 (599)
T ss_pred --cccCCEEEEEcCCCceEEEeC--C--CEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHH
Confidence 455677776655555555442 2 2689999999999999999999999999999999999999999999999999
Q ss_pred HcCCceeeeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCCchhHHHHHHHHHH
Q 036208 168 ISGLNVMRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHF 247 (279)
Q Consensus 168 ~ag~~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l 247 (279)
.||++.+.+++||+|||++|..... ....++|+|+||||+|++++++.++.+++++..++..+||.+||+.|.+++
T Consensus 154 ~AGl~v~~li~EPtAAAlay~~~~~----~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~l 229 (599)
T TIGR01991 154 LAGLNVLRLLNEPTAAAVAYGLDKA----SEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWI 229 (599)
T ss_pred HcCCCceEEecCHHHHHHHHhhccC----CCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999987664 567899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCCCCHHHHHHHHHHHHhhhcC
Q 036208 248 VQEFKRKNKKDISGNPRALRRLRTACERAKRT 279 (279)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~aK~~ 279 (279)
.+++ +.+...+++.+.+|+.+||++|+.
T Consensus 230 ~~~~----~~~~~~~~~~~~~L~~~ae~aK~~ 257 (599)
T TIGR01991 230 LKQL----GISADLNPEDQRLLLQAARAAKEA 257 (599)
T ss_pred HHhh----CCCCCCCHHHHHHHHHHHHHHHHh
Confidence 8664 444467889999999999999973
No 14
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-45 Score=327.52 Aligned_cols=247 Identities=58% Similarity=0.874 Sum_probs=227.5
Q ss_pred CCCEEEEEcCCcceEEEEEeCC-ceEEEecCCCCcccceEEEEcCC-ceeecHHHHhhhhhCcCcccccchhhcCCCCCC
Q 036208 6 EGPAIGIDLGTTYSCVGVWQHD-RVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSD 83 (279)
Q Consensus 6 ~~~vvGID~Gt~~t~v~~~~~~-~~~~v~~~~~~~~~ps~i~~~~~-~~~~G~~a~~~~~~~~~~~~~~~k~~l~~~~~~ 83 (279)
...+||||||||||+||+++++ .+.++.+..+.+.+||+++|... ++++|..|..+...+|.+++..+|+.+|.....
T Consensus 4 ~~~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~~ 83 (579)
T COG0443 4 AKKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSNG 83 (579)
T ss_pred CceEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCCC
Confidence 4579999999999999999988 79999999999999999999866 599999999999999999999999999976111
Q ss_pred hhHhhccccCCceEEecCCCcceEEEEeCCceeeEeHHHHHHHHHHHHHHHHHHHhCCcccceEEeeCCCCCHHHHHHHH
Q 036208 84 PSVQSDMKLWPFKVIAGAGDKPMIVVNYKGEEKQFSAEEISSMVLNKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQATK 163 (279)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~isvP~~~~~~~r~~l~ 163 (279)
..+.+..++ ..++++++.+++|.++++.++.+++..+..++|+||++|++.||++++
T Consensus 84 ---------------------~~~~~~~~~--~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~ 140 (579)
T COG0443 84 ---------------------LKISVEVDG--KKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATK 140 (579)
T ss_pred ---------------------CcceeeeCC--eeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHH
Confidence 111222222 578999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceeeeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCCchhHHHHHH
Q 036208 164 DAGVISGLNVMRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRM 243 (279)
Q Consensus 164 ~a~~~ag~~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg~~id~~l 243 (279)
+|++.||++.+++++||+|||++|..... ....|||+|+||||||+|++++..+.+++++..++..+||.+||..|
T Consensus 141 ~A~~iaGl~vlrlinEPtAAAlayg~~~~----~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l 216 (579)
T COG0443 141 DAARIAGLNVLRLINEPTAAALAYGLDKG----KEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNAL 216 (579)
T ss_pred HHHHHcCCCeEEEecchHHHHHHhHhccC----CCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHH
Confidence 99999999999999999999999999887 88999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhhhcC
Q 036208 244 VNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRT 279 (279)
Q Consensus 244 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~aK~~ 279 (279)
.+++.++|..+.+.+++.++..+.||..+|+++|+.
T Consensus 217 ~~~~~~~f~~~~~~d~~~~~~~~~rL~~~ae~aK~~ 252 (579)
T COG0443 217 IDYLVMEFKGKGGIDLRSDKAALQRLREAAEKAKIE 252 (579)
T ss_pred HHHHHHHhhccCCccccccHHHHHHHHHHHHHHHHH
Confidence 999999999999889999999999999999999973
No 15
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-45 Score=317.88 Aligned_cols=270 Identities=42% Similarity=0.680 Sum_probs=263.3
Q ss_pred EEEEEcCCcceEEEEEeCCceEEEecCCCCcccceEEEEcCCceeecHHHHhhhhhCcCcccccchhhcCCCCCChhHhh
Q 036208 9 AIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDPSVQS 88 (279)
Q Consensus 9 vvGID~Gt~~t~v~~~~~~~~~~v~~~~~~~~~ps~i~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~~l~~~~~~~~~~~ 88 (279)
+||||||..++.+++..++++++|.|+.++|.+|++++|..++|++|.+|..+...++.+++..+|+++|++.++|.++.
T Consensus 3 vvG~D~Gn~nc~iavAr~~gIe~i~nd~Snr~TPa~vsfg~K~R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP~~q~ 82 (727)
T KOG0103|consen 3 VVGFDLGNENCYIAVARQGGIEVVANDYSNRETPAIVSFGPKNRFIGVAAKNQQTTNVKNTVSNFKRLIGRKFSDPEVQR 82 (727)
T ss_pred ceeeeccccceeeeeeccCCceeeeeccccccCcceeeeccccceeeeccccceeecccccchhhhhhhccccCChHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCceEEecCCCcceEEEEeCCceeeEeHHHHHHHHHHHHHHHHHHHhCCcccceEEeeCCCCCHHHHHHHHHHHHH
Q 036208 89 DMKLWPFKVIAGAGDKPMIVVNYKGEEKQFSAEEISSMVLNKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQATKDAGVI 168 (279)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~isvP~~~~~~~r~~l~~a~~~ 168 (279)
+...+++.+....++...+.+++.++.+.+++++++++||.++...++..+..++..+||+||++|++.||+++.+|++.
T Consensus 83 ~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravldAA~i 162 (727)
T KOG0103|consen 83 EIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDAARI 162 (727)
T ss_pred cccccchheeecCCCCcceeehcccCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHHHhHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeeeecchhHHHHHhhhccCCC---CCCCeEEEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCCchhHHHHHHHH
Q 036208 169 SGLNVMRIINEPTAAAIAYGLDKKAG---STGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVN 245 (279)
Q Consensus 169 ag~~~~~~i~e~~Aaa~~~~~~~~~~---~~~~~~vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~ 245 (279)
||+.+++++.|..|+|++|+....+- ..++..++++|+|.+++.++++.|..++++++++.++..+||+++|+.|.+
T Consensus 163 agLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~kG~lkvl~ta~D~~lGgr~fDe~L~~ 242 (727)
T KOG0103|consen 163 AGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGRDFDEALID 242 (727)
T ss_pred cCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeeeccCcceeeeeecccccccchHHHHHHH
Confidence 99999999999999999999988762 455788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCCCCCHHHHHHHHHHHHhhhc
Q 036208 246 HFVQEFKRKNKKDISGNPRALRRLRTACERAKR 278 (279)
Q Consensus 246 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~aK~ 278 (279)
|+.++|+.+|+.+++.++++..||+..|||+|+
T Consensus 243 hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK 275 (727)
T KOG0103|consen 243 HFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKK 275 (727)
T ss_pred HHHHHhccccccchhhchhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999997
No 16
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.6e-44 Score=310.89 Aligned_cols=277 Identities=80% Similarity=1.179 Sum_probs=264.7
Q ss_pred CCCCCCCCEEEEEcCCcceEEEEEeCCceEEEecCCCCcccceEEEEcCCceeecHHHHhhhhhCcCcccccchhhcCCC
Q 036208 1 MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRR 80 (279)
Q Consensus 1 m~~~~~~~vvGID~Gt~~t~v~~~~~~~~~~v~~~~~~~~~ps~i~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~~l~~~ 80 (279)
|+..+.+..+|||||||+++++++.++..+++.+..|++.+||+++|.+.+++.|..|..+...+|.+++.++|+++|+.
T Consensus 1 ~~~~~~~~aiGIdlGtT~s~v~v~~~~~v~iian~~g~rttPs~vaf~~~e~~vg~~a~~qv~~np~ntv~~~krliGr~ 80 (620)
T KOG0101|consen 1 KLATPESVAIGIDLGTTYSCVGVYQSGKVEIIANDQGNRTTPSVVAFTDTERLIGDAAKNQVARNPDNTVFDAKRLIGRF 80 (620)
T ss_pred CCCccccceeeEeccCccceeeeEcCCcceeeeccccCccccceeeecccccchhhhhhhhhhcCCcceeeehhhhcCcc
Confidence 44556778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHhhccccCCceEEecCCCcceEEEEeCCceeeEeHHHHHHHHHHHHHHHHHHHhCCcccceEEeeCCCCCHHHHH
Q 036208 81 FSDPSVQSDMKLWPFKVIAGAGDKPMIVVNYKGEEKQFSAEEISSMVLNKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQ 160 (279)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~isvP~~~~~~~r~ 160 (279)
.+++..+.+.+.||+.+....+..+.+.+.+.+....+.++++..+.|..+.+.++.+++.++..+++|||++|+..||.
T Consensus 81 f~d~~v~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~Qr~ 160 (620)
T KOG0101|consen 81 FDDPEVQSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQRA 160 (620)
T ss_pred ccchhhHhHhhcCCcccccccCCcceEEecccccceeeeeeeeeehhccccHHHHHHHhcCceeeEEEEecCCcCHHHHH
Confidence 99999999999999999988888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCceeeeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCCchhHHH
Q 036208 161 ATKDAGVISGLNVMRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFD 240 (279)
Q Consensus 161 ~l~~a~~~ag~~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg~~id 240 (279)
+..+++..||++.++++.||.|++++|..... ..+..+||++|+||||+|++++.+..+.+.+++..++.++||.++|
T Consensus 161 at~~A~~iaGl~vlrii~EPtAaalAygl~k~--~~~~~~VlI~DlGggtfdvs~l~i~gG~~~vkat~gd~~lGGedf~ 238 (620)
T KOG0101|consen 161 ATKDAALIAGLNVLRIINEPTAAALAYGLDKK--VLGERNVLIFDLGGGTFDVSVLSLEGGIFEVKATAGDTHLGGEDFD 238 (620)
T ss_pred HHHHHHHhcCCceeeeecchHHHHHHhhcccc--ccceeeEEEEEcCCCceeeeeEEeccchhhhhhhcccccccchhhh
Confidence 99999999999999999999999999997665 5678889999999999999999999998899999999999999999
Q ss_pred HHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhhhcC
Q 036208 241 NRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRT 279 (279)
Q Consensus 241 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~aK~~ 279 (279)
+.|.+|+...|+++++.++..+++.++||+.+||.+|+.
T Consensus 239 ~~l~~h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~ 277 (620)
T KOG0101|consen 239 NKLVNHFAAEFKRKAGKDIGGNARALRRLRTACERAKRT 277 (620)
T ss_pred HHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999973
No 17
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=1.5e-42 Score=312.60 Aligned_cols=241 Identities=37% Similarity=0.566 Sum_probs=201.6
Q ss_pred CCEEEEEcCCcceEEEEEeCCceEEEecCCCCcccceEEEEcCCceeecHHHHhhhhhCcCcccccchhhcCCCCCCh--
Q 036208 7 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDP-- 84 (279)
Q Consensus 7 ~~vvGID~Gt~~t~v~~~~~~~~~~v~~~~~~~~~ps~i~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~~l~~~~~~~-- 84 (279)
..+|||||||||+++|++.+++++++.+..|++.+||+|+|.++.+++|..| +++++|+++|+...+.
T Consensus 19 ~~viGIDlGTT~S~va~~~~~~~~ii~n~~g~~~tPS~V~f~~~~~~vG~~A----------ti~~~KrliG~~~~~~~~ 88 (595)
T PRK01433 19 QIAVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSNNFTIGNNK----------GLRSIKRLFGKTLKEILN 88 (595)
T ss_pred ceEEEEEcCcccEEEEEEeCCeeEEEECCCCCeecCeEEEEcCCCEEECchh----------hHHHHHHHhCCCchhhcc
Confidence 3599999999999999999999999999999999999999998889999987 7889999999987542
Q ss_pred --hHhhccccCCceEEecCCCcceEEEEeCCceeeEeHHHHHHHHHHHHHHHHHHHhCCcccceEEeeCCCCCHHHHHHH
Q 036208 85 --SVQSDMKLWPFKVIAGAGDKPMIVVNYKGEEKQFSAEEISSMVLNKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQAT 162 (279)
Q Consensus 85 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~isvP~~~~~~~r~~l 162 (279)
........ .... +.....+.+. ...++|+++.+++|++|++.++.+++.++..+++|||++|++.||+++
T Consensus 89 ~~~~~~~~k~----~~~~--~~~~~~~~~~--~~~~speei~a~iL~~lk~~ae~~lg~~v~~aVITVPa~f~~~qR~a~ 160 (595)
T PRK01433 89 TPALFSLVKD----YLDV--NSSELKLNFA--NKQLRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEV 160 (595)
T ss_pred chhhHhhhhh----eeec--CCCeeEEEEC--CEEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHH
Confidence 11111111 1111 1223333443 357899999999999999999999999899999999999999999999
Q ss_pred HHHHHHcCCceeeeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCCchhHHHHH
Q 036208 163 KDAGVISGLNVMRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNR 242 (279)
Q Consensus 163 ~~a~~~ag~~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg~~id~~ 242 (279)
++|++.||++.+.+++||+|||++|..... ....+||+|+||||+|++++++.++.+++++..++..+||.+||..
T Consensus 161 ~~Aa~~AGl~v~~li~EPtAAAlay~~~~~----~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~d~D~~ 236 (595)
T PRK01433 161 MLAAKIAGFEVLRLIAEPTAAAYAYGLNKN----QKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVV 236 (595)
T ss_pred HHHHHHcCCCEEEEecCcHHHHHHHhcccC----CCCEEEEEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChHHHHHH
Confidence 999999999999999999999999987653 4568999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhhhcC
Q 036208 243 MVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRT 279 (279)
Q Consensus 243 l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~aK~~ 279 (279)
|.+|+.+++.. ..+. +.++.||+||+.
T Consensus 237 l~~~~~~~~~~------~~~~----~~~~~~ekaK~~ 263 (595)
T PRK01433 237 ITQYLCNKFDL------PNSI----DTLQLAKKAKET 263 (595)
T ss_pred HHHHHHHhcCC------CCCH----HHHHHHHHHHHh
Confidence 99999877632 1222 234469999873
No 18
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-40 Score=280.27 Aligned_cols=267 Identities=60% Similarity=0.934 Sum_probs=253.2
Q ss_pred CCCCEEEEEcCCcceEEEEEeCCceEEEecCCCCcccceEEEEc-CCceeecHHHHhhhhhCcCcccccchhhcCCCCCC
Q 036208 5 GEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSD 83 (279)
Q Consensus 5 ~~~~vvGID~Gt~~t~v~~~~~~~~~~v~~~~~~~~~ps~i~~~-~~~~~~G~~a~~~~~~~~~~~~~~~k~~l~~~~~~ 83 (279)
....++|||+||+++++++.++..+.++.|..++|.+|++++|. ++.+++|-.|..++..+|.+++..-|+++|+..++
T Consensus 25 ~~~~vigidlgttnS~va~meg~~~kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrligRrf~d 104 (640)
T KOG0102|consen 25 VKGKVIGIDLGTTNSCVAVMEGKKPKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIGRRFDD 104 (640)
T ss_pred CCCceeeEeeeccceeEEEEeCCCceEeecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEehhhhhhhccC
Confidence 34569999999999999999999999999999999999999995 56899999999999999999999999999999999
Q ss_pred hhHhhccccCCceEEecCCCcceEEEEeCCceeeEeHHHHHHHHHHHHHHHHHHHhCCcccceEEeeCCCCCHHHHHHHH
Q 036208 84 PSVQSDMKLWPFKVIAGAGDKPMIVVNYKGEEKQFSAEEISSMVLNKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQATK 163 (279)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~isvP~~~~~~~r~~l~ 163 (279)
+.++.+.+..|++++...++...++. .+..++|.++.+..|.+++++|+.+++..+...+++||+||.+.||++-+
T Consensus 105 ~evq~~~k~vpyKiVk~~ngdaw~e~----~G~~~spsqig~~vl~kmk~tae~yl~~~v~~avvtvpAyfndsqRqaTk 180 (640)
T KOG0102|consen 105 PEVQKDIKQVPYKIVKASNGDAWVEA----RGKQYSPSQIGAFVLMKMKETAEAYLGKKVKNAVITVPAYFNDSQRQATK 180 (640)
T ss_pred HHHHHHHHhCCcceEEccCCcEEEEe----CCeEecHHHHHHHHHHHHHHHHHHHcCchhhheeeccHHHHhHHHHHHhH
Confidence 99999999999999997777766666 55689999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceeeeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCCchhHHHHHH
Q 036208 164 DAGVISGLNVMRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRM 243 (279)
Q Consensus 164 ~a~~~ag~~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg~~id~~l 243 (279)
+|.+.+|++.+++++||+|+|++|..... ..+.++|+|+||||+|+++.++.++.+++.+..++..+||+++|..+
T Consensus 181 dag~iagl~vlrvineptaaalaygld~k----~~g~iaV~dLgggtfdisilei~~gvfevksTngdtflggedfd~~~ 256 (640)
T KOG0102|consen 181 DAGQIAGLNVLRVINEPTAAALAYGLDKK----EDGVIAVFDLGGGTFDISILEIEDGVFEVKSTNGDTHLGGEDFDNAL 256 (640)
T ss_pred hhhhhccceeeccCCccchhHHhhccccc----CCCceEEEEcCCceeeeeeehhccceeEEEeccCccccChhHHHHHH
Confidence 99999999999999999999999999877 57899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhhhcC
Q 036208 244 VNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRT 279 (279)
Q Consensus 244 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~aK~~ 279 (279)
.+++...+....+.++..+..++.||.+++||||.+
T Consensus 257 ~~~~v~~fk~~~gidl~kd~~a~qrl~eaaEkaKie 292 (640)
T KOG0102|consen 257 VRFIVSEFKKEEGIDLTKDRMALQRLREAAEKAKIE 292 (640)
T ss_pred HHHHHHhhhcccCcchhhhHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999999999999999964
No 19
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-40 Score=285.51 Aligned_cols=272 Identities=32% Similarity=0.561 Sum_probs=252.3
Q ss_pred CCCEEEEEcCCcceEEEEEeCC-ceEEEecCCCCcccceEEEEcCCceeecHHHHhhhhhCcCcccccchhhcCCCCCCh
Q 036208 6 EGPAIGIDLGTTYSCVGVWQHD-RVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDP 84 (279)
Q Consensus 6 ~~~vvGID~Gt~~t~v~~~~~~-~~~~v~~~~~~~~~ps~i~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~~l~~~~~~~ 84 (279)
...+++||+|+.+++|++..+| +.+++.+..+.|+.|++++|.++.|+||+.|.....++|+.++++++.++|++..++
T Consensus 21 ~~AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vafk~~eR~fg~~A~~ma~r~P~~~~~~l~~llgk~~~~~ 100 (902)
T KOG0104|consen 21 ALAVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFKGGERIFGEAAASMATRFPQSTYRQLKDLLGKSLDDP 100 (902)
T ss_pred hhhheeeecccceeEEEEecCCCCeEEeechhhcccCcceEEecCCceehhhhhhhhhhcCcHHHHHHHHHHhCcccCCc
Confidence 3569999999999999999878 678888999999999999999999999999999999999999999999999999999
Q ss_pred hHhhccccCCceEEecCCCcceEEEEeCCceeeEeHHHHHHHHHHHHHHHHHHHhCCcccceEEeeCCCCCHHHHHHHHH
Q 036208 85 SVQSDMKLWPFKVIAGAGDKPMIVVNYKGEEKQFSAEEISSMVLNKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQATKD 164 (279)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~isvP~~~~~~~r~~l~~ 164 (279)
.+..+.+.+|+--+...+.+..+.+.+.+ ...+++++++++.|.+..+.|+.+...++..++||||.+|++.+|+++.+
T Consensus 101 ~v~ly~~~~p~~e~v~d~~rstV~F~i~d-~~~ysvEellAMil~~a~~~ae~~a~~~Ikd~ViTVP~~F~qaeR~all~ 179 (902)
T KOG0104|consen 101 TVDLYQKRFPFFELVEDPQRSTVVFKISD-QEEYSVEELLAMILQYAKSLAEEYAKQPIKDMVITVPPFFNQAERRALLQ 179 (902)
T ss_pred HHHHHHhcCCceeecccCccceEEEEeCC-ccccCHHHHHHHHHHHHHHHHHHHHhcchhheEEeCCcccCHHHHHHHHH
Confidence 99999999998777766688888888877 56899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceeeeecchhHHHHHhhhccCC-CCCCCeEEEEEEecCcceEEEEEeEeC----------CeEEEEEEeCCCC
Q 036208 165 AGVISGLNVMRIINEPTAAAIAYGLDKKA-GSTGEKNVLIFDLGGGTFDVSLLTIEE----------GIFEVKATAGDTH 233 (279)
Q Consensus 165 a~~~ag~~~~~~i~e~~Aaa~~~~~~~~~-~~~~~~~vlvvDiG~gttd~sv~~~~~----------~~~~~~~~~~~~~ 233 (279)
|++.||++...+|++..|+|+.|+..+.+ ....+.+++|+|+|+|+|.++++.+.- ..+++++.+++..
T Consensus 180 Aa~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~p~i~~~gvGfd~t 259 (902)
T KOG0104|consen 180 AAQIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLGVGFDRT 259 (902)
T ss_pred HHHhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEeeccccccCccceEEEEeeccCCc
Confidence 99999999999999999999999998755 456788999999999999999998852 4889999999999
Q ss_pred CchhHHHHHHHHHHHHHHHhhhC--CCCCCCHHHHHHHHHHHHhhhc
Q 036208 234 LGGEDFDNRMVNHFVQEFKRKNK--KDISGNPRALRRLRTACERAKR 278 (279)
Q Consensus 234 ~Gg~~id~~l~~~l~~~~~~~~~--~~~~~~~~~~~~l~~~~~~aK~ 278 (279)
+||..++.+|.+|+.+.|.+..+ .+++.++|++.||.++++++|.
T Consensus 260 LGG~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~ 306 (902)
T KOG0104|consen 260 LGGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQ 306 (902)
T ss_pred cchHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999876 5788999999999999999985
No 20
>PRK11678 putative chaperone; Provisional
Probab=100.00 E-value=5.6e-39 Score=280.22 Aligned_cols=209 Identities=26% Similarity=0.403 Sum_probs=180.7
Q ss_pred EEEEEcCCcceEEEEEeCCceEEEecCCCCcccceEEEEc----------------------------------------
Q 036208 9 AIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFT---------------------------------------- 48 (279)
Q Consensus 9 vvGID~Gt~~t~v~~~~~~~~~~v~~~~~~~~~ps~i~~~---------------------------------------- 48 (279)
++|||||||||.++++.++.++++++..+.+.+||+++|.
T Consensus 2 ~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T PRK11678 2 FIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDIDV 81 (450)
T ss_pred eEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhcccccccc
Confidence 6999999999999999999999999999999999999994
Q ss_pred -CCceeecHHHHhhhhhCcCcc--cccchhhcCCCCCChhHhhccccCCceEEecCCCcceEEEEeCCceeeEeHHHHHH
Q 036208 49 -DTERLIGDAAKNQVAMNPTNT--VFDAKRLIGRRFSDPSVQSDMKLWPFKVIAGAGDKPMIVVNYKGEEKQFSAEEISS 125 (279)
Q Consensus 49 -~~~~~~G~~a~~~~~~~~~~~--~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (279)
++..++|.+|.+....+|.++ +..+|+++|.....+ .....++++++
T Consensus 82 ~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~~------------------------------~~~~~~e~l~a 131 (450)
T PRK11678 82 TAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLKP------------------------------QQVALFEDLVC 131 (450)
T ss_pred cccccchhHHHHHhhccCCCCceEEecchhhhccCCCCc------------------------------cceeCHHHHHH
Confidence 445679999999988888888 779999998642110 11234899999
Q ss_pred HHHHHHHHHHHHHhCCcccceEEeeCCCCC-----HHHHHH---HHHHHHHcCCceeeeecchhHHHHHhhhccCCCCCC
Q 036208 126 MVLNKMKEIAEAYLGTTIKNAVVTVPAYFN-----DSQRQA---TKDAGVISGLNVMRIINEPTAAAIAYGLDKKAGSTG 197 (279)
Q Consensus 126 ~~l~~l~~~~~~~~~~~~~~~~isvP~~~~-----~~~r~~---l~~a~~~ag~~~~~~i~e~~Aaa~~~~~~~~~~~~~ 197 (279)
.+|++|++.++.+++.++..+||+||++|+ +.+|++ |++|++.||++.+.+++||+|||++|..... .
T Consensus 132 ~iL~~lk~~ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~----~ 207 (450)
T PRK11678 132 AMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLT----E 207 (450)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccC----C
Confidence 999999999999999889999999999998 677655 7999999999999999999999999976443 6
Q ss_pred CeEEEEEEecCcceEEEEEeEeCC-------eEEEEEEeCCCCCchhHHHHHHH-HHHHHHHH
Q 036208 198 EKNVLIFDLGGGTFDVSLLTIEEG-------IFEVKATAGDTHLGGEDFDNRMV-NHFVQEFK 252 (279)
Q Consensus 198 ~~~vlvvDiG~gttd~sv~~~~~~-------~~~~~~~~~~~~~Gg~~id~~l~-~~l~~~~~ 252 (279)
+..+||+|+||||+|+|++++.+. ..+++++.+ ..+||.+||..|. +++...+.
T Consensus 208 ~~~vlV~D~GGGT~D~Svv~~~~~~~~~~~r~~~vla~~G-~~lGG~DfD~~L~~~~~~~~fg 269 (450)
T PRK11678 208 EKRVLVVDIGGGTTDCSMLLMGPSWRGRADRSASLLGHSG-QRIGGNDLDIALAFKQLMPLLG 269 (450)
T ss_pred CCeEEEEEeCCCeEEEEEEEecCcccccCCcceeEEecCC-CCCChHHHHHHHHHHHHHHHhh
Confidence 788999999999999999999754 357888887 7899999999997 67777765
No 21
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=99.96 E-value=6.5e-27 Score=199.09 Aligned_cols=187 Identities=29% Similarity=0.450 Sum_probs=147.4
Q ss_pred EEEEEcCCcceEEEEEeCCceEEEecCCCCcccceEEEEcCCc---eeecHHHHhhhhhCcCcccccchhhcCCCCCChh
Q 036208 9 AIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTE---RLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDPS 85 (279)
Q Consensus 9 vvGID~Gt~~t~v~~~~~~~~~~v~~~~~~~~~ps~i~~~~~~---~~~G~~a~~~~~~~~~~~~~~~k~~l~~~~~~~~ 85 (279)
.+||||||++|.+ +.++... +.+. ||+++++.+. ..+|++|..+..+.|.++... +-+ .+
T Consensus 6 ~~giDlGt~~~~i--~~~~~~~-~~~~------ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~--~pi----~~-- 68 (335)
T PRK13929 6 EIGIDLGTANILV--YSKNKGI-ILNE------PSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAV--RPM----KD-- 68 (335)
T ss_pred eEEEEcccccEEE--EECCCcE-EecC------CcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEE--ecC----CC--
Confidence 6999999999986 4445443 4443 9999998543 469999999888888777542 111 00
Q ss_pred HhhccccCCceEEecCCCcceEEEEeCCceeeEeHHHHHHHHHHHHHHHHHHHhCCcc--cceEEeeCCCCCHHHHHHHH
Q 036208 86 VQSDMKLWPFKVIAGAGDKPMIVVNYKGEEKQFSAEEISSMVLNKMKEIAEAYLGTTI--KNAVVTVPAYFNDSQRQATK 163 (279)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~~isvP~~~~~~~r~~l~ 163 (279)
..+...++++.+|++++..+...++..+ ..+++|+|++|+..+|+++.
T Consensus 69 ------------------------------G~I~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~ 118 (335)
T PRK13929 69 ------------------------------GVIADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAIS 118 (335)
T ss_pred ------------------------------CccCCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHH
Confidence 0123347889999999998877766443 37999999999999999999
Q ss_pred HHHHHcCCceeeeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCCchhHHHHHH
Q 036208 164 DAGVISGLNVMRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRM 243 (279)
Q Consensus 164 ~a~~~ag~~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg~~id~~l 243 (279)
++++.+|++.+.++.||.|+|+++..... ....++|+|+|+||||+++++++... ......+||.++|+.|
T Consensus 119 ~a~~~ag~~~~~li~ep~Aaa~~~g~~~~----~~~~~lvvDiG~gtt~v~vi~~~~~~-----~~~~~~~GG~~id~~l 189 (335)
T PRK13929 119 DAVKNCGAKNVHLIEEPVAAAIGADLPVD----EPVANVVVDIGGGTTEVAIISFGGVV-----SCHSIRIGGDQLDEDI 189 (335)
T ss_pred HHHHHcCCCeeEeecCHHHHHHhcCCCcC----CCceEEEEEeCCCeEEEEEEEeCCEE-----EecCcCCHHHHHHHHH
Confidence 99999999999999999999999876544 56789999999999999999876522 2344789999999999
Q ss_pred HHHHHHHH
Q 036208 244 VNHFVQEF 251 (279)
Q Consensus 244 ~~~l~~~~ 251 (279)
.+++.+.+
T Consensus 190 ~~~l~~~~ 197 (335)
T PRK13929 190 VSFVRKKY 197 (335)
T ss_pred HHHHHHHh
Confidence 99997654
No 22
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=99.95 E-value=4.2e-26 Score=194.68 Aligned_cols=187 Identities=26% Similarity=0.413 Sum_probs=142.7
Q ss_pred EEEEcCCcceEEEEEeCCceEEEecCCCCcccceEEEEcCC--c-eeecHHHHhhhhhCcCcccccchhhcCCCCCChhH
Q 036208 10 IGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDT--E-RLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDPSV 86 (279)
Q Consensus 10 vGID~Gt~~t~v~~~~~~~~~~v~~~~~~~~~ps~i~~~~~--~-~~~G~~a~~~~~~~~~~~~~~~k~~l~~~~~~~~~ 86 (279)
+||||||++|+++.. +...++. .||++++... . ..+|++|.....+.|.+.... +-+
T Consensus 6 ~gIDlGt~~~~i~~~--~~~~v~~-------~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~~--~pi--------- 65 (336)
T PRK13928 6 IGIDLGTANVLVYVK--GKGIVLN-------EPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVAI--RPL--------- 65 (336)
T ss_pred eEEEcccccEEEEEC--CCCEEEc-------cCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEEE--ccC---------
Confidence 899999999999875 4334444 3999999953 2 368999987766666555421 000
Q ss_pred hhccccCCceEEecCCCcceEEEEeCCceeeEeHHHHHHHHHHHHHHHHHHHhCCcccceEEeeCCCCCHHHHHHHHHHH
Q 036208 87 QSDMKLWPFKVIAGAGDKPMIVVNYKGEEKQFSAEEISSMVLNKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQATKDAG 166 (279)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~isvP~~~~~~~r~~l~~a~ 166 (279)
..-.+...+.+..+|+++++.+..........++++||++|+..+|+++++++
T Consensus 66 ---------------------------~~G~i~d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a~ 118 (336)
T PRK13928 66 ---------------------------RDGVIADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAA 118 (336)
T ss_pred ---------------------------CCCeEecHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 00123455677888888886654332223346999999999999999999999
Q ss_pred HHcCCceeeeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCCchhHHHHHHHHH
Q 036208 167 VISGLNVMRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNH 246 (279)
Q Consensus 167 ~~ag~~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~ 246 (279)
+.+|++.+.+++||.|||+++..... .+..++|+|+|+||||+++++.+... .....++||.+||+.|.++
T Consensus 119 ~~ag~~~~~li~ep~Aaa~~~g~~~~----~~~~~lVvDiGggttdvsvv~~g~~~-----~~~~~~lGG~did~~i~~~ 189 (336)
T PRK13928 119 EQAGAKKVYLIEEPLAAAIGAGLDIS----QPSGNMVVDIGGGTTDIAVLSLGGIV-----TSSSIKVAGDKFDEAIIRY 189 (336)
T ss_pred HHcCCCceEecccHHHHHHHcCCccc----CCCeEEEEEeCCCeEEEEEEEeCCEE-----EeCCcCCHHHHHHHHHHHH
Confidence 99999999999999999999987554 56679999999999999999876422 2346899999999999999
Q ss_pred HHHHHH
Q 036208 247 FVQEFK 252 (279)
Q Consensus 247 l~~~~~ 252 (279)
+.++|.
T Consensus 190 l~~~~~ 195 (336)
T PRK13928 190 IRKKYK 195 (336)
T ss_pred HHHHhc
Confidence 987664
No 23
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=99.94 E-value=3.1e-25 Score=189.16 Aligned_cols=186 Identities=26% Similarity=0.422 Sum_probs=137.2
Q ss_pred EEEEcCCcceEEEEEeCCceEEEecCCCCcccceEEEEcCC-----c--eeecHHHHhhhhhCcCcccccchhhcCCCCC
Q 036208 10 IGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDT-----E--RLIGDAAKNQVAMNPTNTVFDAKRLIGRRFS 82 (279)
Q Consensus 10 vGID~Gt~~t~v~~~~~~~~~~v~~~~~~~~~ps~i~~~~~-----~--~~~G~~a~~~~~~~~~~~~~~~k~~l~~~~~ 82 (279)
+||||||++|.++....+ .++. .||++++.++ . ..+|++|.....+.|.+... ++-+..
T Consensus 5 ~giDlGt~~s~i~~~~~~--~~~~-------~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~~--~~pi~~--- 70 (333)
T TIGR00904 5 IGIDLGTANTLVYVKGRG--IVLN-------EPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIVA--IRPMKD--- 70 (333)
T ss_pred eEEecCcceEEEEECCCC--EEEe-------cCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEEE--EecCCC---
Confidence 999999999998875333 2332 4999999843 2 56999998776665655431 111100
Q ss_pred ChhHhhccccCCceEEecCCCcceEEEEeCCceeeEeHHHHHHHHHHHHHHHHHHHhCCcccceEEeeCCCCCHHHHHHH
Q 036208 83 DPSVQSDMKLWPFKVIAGAGDKPMIVVNYKGEEKQFSAEEISSMVLNKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQAT 162 (279)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~isvP~~~~~~~r~~l 162 (279)
..+...+.+..++++++.............+++++|++|+..+|+++
T Consensus 71 ---------------------------------G~i~d~~~~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~ 117 (333)
T TIGR00904 71 ---------------------------------GVIADFEVTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRAV 117 (333)
T ss_pred ---------------------------------CEEEcHHHHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHHH
Confidence 01223344566666666555432222223899999999999999999
Q ss_pred HHHHHHcCCceeeeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCCchhHHHHH
Q 036208 163 KDAGVISGLNVMRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNR 242 (279)
Q Consensus 163 ~~a~~~ag~~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg~~id~~ 242 (279)
+++++.+|++.+.+++||.|+|+++..... ....++|||+|+||||+++++..... .....++||.++|+.
T Consensus 118 ~~~~~~ag~~~~~li~ep~aaa~~~g~~~~----~~~~~lVvDiG~gttdvs~v~~~~~~-----~~~~~~lGG~did~~ 188 (333)
T TIGR00904 118 KESALSAGAREVYLIEEPMAAAIGAGLPVE----EPTGSMVVDIGGGTTEVAVISLGGIV-----VSRSIRVGGDEFDEA 188 (333)
T ss_pred HHHHHHcCCCeEEEecCHHHHHHhcCCccc----CCceEEEEEcCCCeEEEEEEEeCCEE-----ecCCccchHHHHHHH
Confidence 999999999999999999999999876543 55678999999999999999876532 234468999999999
Q ss_pred HHHHHHHHH
Q 036208 243 MVNHFVQEF 251 (279)
Q Consensus 243 l~~~l~~~~ 251 (279)
|.+++.+++
T Consensus 189 l~~~l~~~~ 197 (333)
T TIGR00904 189 IINYIRRTY 197 (333)
T ss_pred HHHHHHHHh
Confidence 999998665
No 24
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.93 E-value=4.1e-25 Score=184.29 Aligned_cols=203 Identities=27% Similarity=0.403 Sum_probs=138.2
Q ss_pred CEEEEEcCCcceEEEEEeCCceEEEecCCCCcccceEEEEcCCc---eeecHHHHhhhhhCcCcccccchhhcCCCCCCh
Q 036208 8 PAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTE---RLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDP 84 (279)
Q Consensus 8 ~vvGID~Gt~~t~v~~~~~~~~~~v~~~~~~~~~ps~i~~~~~~---~~~G~~a~~~~~~~~~~~~~~~k~~l~~~~~~~ 84 (279)
.-+||||||++|.++....| ++.++ ||+++++... ..+|++|.....+.|.+...-.. +
T Consensus 2 ~~igIDLGT~~t~i~~~~~G---iv~~e------pSvVA~~~~~~~i~avG~~A~~m~gktp~~i~~~~P--l------- 63 (326)
T PF06723_consen 2 KDIGIDLGTSNTRIYVKGKG---IVLNE------PSVVAYDKDTGKILAVGDEAKAMLGKTPDNIEVVRP--L------- 63 (326)
T ss_dssp SEEEEEE-SSEEEEEETTTE---EEEEE------ES-EEEETTT--EEEESHHHHTTTTS-GTTEEEE-S--E-------
T ss_pred CceEEecCcccEEEEECCCC---EEEec------CcEEEEECCCCeEEEEhHHHHHHhhcCCCccEEEcc--c-------
Confidence 36899999999999553322 23333 9999998753 34899997776666655421100 1
Q ss_pred hHhhccccCCceEEecCCCcceEEEEeCCceeeEeHHHHHHHHHHHHHHHHHHHhCCcccceEEeeCCCCCHHHHHHHHH
Q 036208 85 SVQSDMKLWPFKVIAGAGDKPMIVVNYKGEEKQFSAEEISSMVLNKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQATKD 164 (279)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~isvP~~~~~~~r~~l~~ 164 (279)
..-.+.--+++..+|+++++.+..........++++||+.-++.+|+++.+
T Consensus 64 -----------------------------~~GvI~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~ 114 (326)
T PF06723_consen 64 -----------------------------KDGVIADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALID 114 (326)
T ss_dssp -----------------------------ETTEESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHH
T ss_pred -----------------------------cCCcccCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHH
Confidence 001233456788899999998876433344589999999999999999999
Q ss_pred HHHHcCCceeeeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCCchhHHHHHHH
Q 036208 165 AGVISGLNVMRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMV 244 (279)
Q Consensus 165 a~~~ag~~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg~~id~~l~ 244 (279)
++..+|...+.+++||.|||+.....-. .+...++||+|+||||++++..+.- +.+. ...+||+++|+.|.
T Consensus 115 a~~~aGa~~V~li~ep~AaAiGaGl~i~----~~~g~miVDIG~GtTdiavislggi----v~s~-si~~gG~~~DeaI~ 185 (326)
T PF06723_consen 115 AARQAGARKVYLIEEPIAAAIGAGLDIF----EPRGSMIVDIGGGTTDIAVISLGGI----VASR-SIRIGGDDIDEAII 185 (326)
T ss_dssp HHHHTT-SEEEEEEHHHHHHHHTT--TT----SSS-EEEEEE-SS-EEEEEEETTEE----EEEE-EES-SHHHHHHHHH
T ss_pred HHHHcCCCEEEEecchHHHHhcCCCCCC----CCCceEEEEECCCeEEEEEEECCCE----EEEE-EEEecCcchhHHHH
Confidence 9999999999999999999999988766 7889999999999999999976552 2233 37899999999999
Q ss_pred HHHHHHHHhhhCCCCCCCHHHHHHHHHH
Q 036208 245 NHFVQEFKRKNKKDISGNPRALRRLRTA 272 (279)
Q Consensus 245 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 272 (279)
+|++++|.- ..+.+...+|..+
T Consensus 186 ~~ir~~y~l------~Ig~~tAE~iK~~ 207 (326)
T PF06723_consen 186 RYIREKYNL------LIGERTAEKIKIE 207 (326)
T ss_dssp HHHHHHHSE------E--HHHHHHHHHH
T ss_pred HHHHHhhCc------ccCHHHHHHHHHh
Confidence 999888742 3445555555443
No 25
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=99.93 E-value=1.7e-24 Score=184.91 Aligned_cols=187 Identities=24% Similarity=0.414 Sum_probs=137.7
Q ss_pred CEEEEEcCCcceEEEEEeCCceEEEecCCCCcccceEEEEcCC-c--eeecHHHHhhhhhCcCcccccchhhcCCCCCCh
Q 036208 8 PAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDT-E--RLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDP 84 (279)
Q Consensus 8 ~vvGID~Gt~~t~v~~~~~~~~~~v~~~~~~~~~ps~i~~~~~-~--~~~G~~a~~~~~~~~~~~~~~~k~~l~~~~~~~ 84 (279)
..||||+||++|+++....+ .++. +||++++.+. . .++|++|.....+.|.++....+ +..
T Consensus 6 ~~igIDlGt~~~~i~~~~~~--~~~~-------~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~~~~p--i~~----- 69 (334)
T PRK13927 6 NDLGIDLGTANTLVYVKGKG--IVLN-------EPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIVAIRP--MKD----- 69 (334)
T ss_pred ceeEEEcCcceEEEEECCCc--EEEe-------cCCEEEEECCCCeEEEecHHHHHHhhcCCCCEEEEec--CCC-----
Confidence 36999999999999653322 2332 5999999754 2 47999998877666665432110 100
Q ss_pred hHhhccccCCceEEecCCCcceEEEEeCCceeeEeHHHHHHHHHHHHHHHHHHHhCCcccceEEeeCCCCCHHHHHHHHH
Q 036208 85 SVQSDMKLWPFKVIAGAGDKPMIVVNYKGEEKQFSAEEISSMVLNKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQATKD 164 (279)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~isvP~~~~~~~r~~l~~ 164 (279)
..+...+.+..++++++......... ...+++++|++|+..+|++++.
T Consensus 70 -------------------------------G~i~d~~~~~~ll~~~~~~~~~~~~~-~~~~vi~vP~~~~~~~r~~~~~ 117 (334)
T PRK13927 70 -------------------------------GVIADFDVTEKMLKYFIKKVHKNFRP-SPRVVICVPSGITEVERRAVRE 117 (334)
T ss_pred -------------------------------CeecCHHHHHHHHHHHHHHHhhccCC-CCcEEEEeCCCCCHHHHHHHHH
Confidence 01122234566666666554333222 2379999999999999999999
Q ss_pred HHHHcCCceeeeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCCchhHHHHHHH
Q 036208 165 AGVISGLNVMRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMV 244 (279)
Q Consensus 165 a~~~ag~~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg~~id~~l~ 244 (279)
+++.+|++.+.++.||.|+|+++..... ....++|||+|+||||+++++..... .....++||.+||+.|.
T Consensus 118 a~~~ag~~~~~li~ep~aaa~~~g~~~~----~~~~~lvvDiGggttdvs~v~~~~~~-----~~~~~~lGG~~id~~l~ 188 (334)
T PRK13927 118 SALGAGAREVYLIEEPMAAAIGAGLPVT----EPTGSMVVDIGGGTTEVAVISLGGIV-----YSKSVRVGGDKFDEAII 188 (334)
T ss_pred HHHHcCCCeeccCCChHHHHHHcCCccc----CCCeEEEEEeCCCeEEEEEEecCCeE-----eeCCcCChHHHHHHHHH
Confidence 9999999999999999999999987544 45678999999999999999876532 23447899999999999
Q ss_pred HHHHHHH
Q 036208 245 NHFVQEF 251 (279)
Q Consensus 245 ~~l~~~~ 251 (279)
+++.+++
T Consensus 189 ~~l~~~~ 195 (334)
T PRK13927 189 NYVRRNY 195 (334)
T ss_pred HHHHHHh
Confidence 9998655
No 26
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=99.93 E-value=6.1e-24 Score=181.71 Aligned_cols=187 Identities=25% Similarity=0.375 Sum_probs=140.3
Q ss_pred EEEEEcCCcceEEEEEeCCceEEEecCCCCcccceEEEEcCC---ceeecHHHHhhhhhCcCcccccchhhcCCCCCChh
Q 036208 9 AIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDT---ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDPS 85 (279)
Q Consensus 9 vvGID~Gt~~t~v~~~~~~~~~~v~~~~~~~~~ps~i~~~~~---~~~~G~~a~~~~~~~~~~~~~~~k~~l~~~~~~~~ 85 (279)
.+||||||++|++++..++ .++. .||++++.+. ..++|++|.......|.+... ++-+
T Consensus 10 ~vgiDlGt~~t~i~~~~~~--~~~~-------~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~~--~~pi-------- 70 (335)
T PRK13930 10 DIGIDLGTANTLVYVKGKG--IVLN-------EPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIEA--IRPL-------- 70 (335)
T ss_pred ceEEEcCCCcEEEEECCCC--EEEe-------cCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeEE--eecC--------
Confidence 4999999999999886333 2332 3999999752 357999998776555543311 1001
Q ss_pred HhhccccCCceEEecCCCcceEEEEeCCceeeEeHHHHHHHHHHHHHHHHHHHhCCcccceEEeeCCCCCHHHHHHHHHH
Q 036208 86 VQSDMKLWPFKVIAGAGDKPMIVVNYKGEEKQFSAEEISSMVLNKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQATKDA 165 (279)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~isvP~~~~~~~r~~l~~a 165 (279)
....+...+.+..+++++++.+..........+++++|++|+..+|+.+.++
T Consensus 71 ----------------------------~~G~i~d~~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~~ 122 (335)
T PRK13930 71 ----------------------------KDGVIADFEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREA 122 (335)
T ss_pred ----------------------------CCCeEcCHHHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHHH
Confidence 0001223356788888888766554344456899999999999999999999
Q ss_pred HHHcCCceeeeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCCchhHHHHHHHH
Q 036208 166 GVISGLNVMRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVN 245 (279)
Q Consensus 166 ~~~ag~~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~ 245 (279)
++.+|++.+.++.||.|||+++..... ....++|||+|+||||++++..+... .....++||.+||+.|.+
T Consensus 123 ~e~~g~~~~~lv~ep~AAa~a~g~~~~----~~~~~lVvDiG~gttdvs~v~~g~~~-----~~~~~~lGG~~id~~l~~ 193 (335)
T PRK13930 123 AEHAGAREVYLIEEPMAAAIGAGLPVT----EPVGNMVVDIGGGTTEVAVISLGGIV-----YSESIRVAGDEMDEAIVQ 193 (335)
T ss_pred HHHcCCCeEEecccHHHHHHhcCCCcC----CCCceEEEEeCCCeEEEEEEEeCCEE-----eecCcCchhHHHHHHHHH
Confidence 999999999999999999998876544 34567999999999999999876522 244589999999999999
Q ss_pred HHHHHH
Q 036208 246 HFVQEF 251 (279)
Q Consensus 246 ~l~~~~ 251 (279)
++.+++
T Consensus 194 ~l~~~~ 199 (335)
T PRK13930 194 YVRRKY 199 (335)
T ss_pred HHHHHh
Confidence 998764
No 27
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.91 E-value=1.1e-22 Score=164.09 Aligned_cols=191 Identities=26% Similarity=0.406 Sum_probs=147.4
Q ss_pred CCEEEEEcCCcceEEEEEeCCceEEEecCCCCcccceEEEEcC--Cc---eeecHHHHhhhhhCcCcccccchhhcCCCC
Q 036208 7 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTD--TE---RLIGDAAKNQVAMNPTNTVFDAKRLIGRRF 81 (279)
Q Consensus 7 ~~vvGID~Gt~~t~v~~~~~~~~~~v~~~~~~~~~ps~i~~~~--~~---~~~G~~a~~~~~~~~~~~~~~~k~~l~~~~ 81 (279)
+.-||||+||.||.|..- ++- ++.++ ||++++.. +. ..+|.+|....-+.|.+...--.+
T Consensus 6 s~diGIDLGTanTlV~~k--~kg-IVl~e------PSVVAi~~~~~~~~v~aVG~eAK~MlGrTP~ni~aiRPm------ 70 (342)
T COG1077 6 SNDIGIDLGTANTLVYVK--GKG-IVLNE------PSVVAIESEGKTKVVLAVGEEAKQMLGRTPGNIVAIRPM------ 70 (342)
T ss_pred cccceeeecccceEEEEc--Cce-EEecC------ceEEEEeecCCCceEEEehHHHHHHhccCCCCceEEeec------
Confidence 347999999999999764 332 45555 99999987 33 248999965554555443210000
Q ss_pred CChhHhhccccCCceEEecCCCcceEEEEeCCceeeEeHHHHHHHHHHHHHHHHHHHhC-CcccceEEeeCCCCCHHHHH
Q 036208 82 SDPSVQSDMKLWPFKVIAGAGDKPMIVVNYKGEEKQFSAEEISSMVLNKMKEIAEAYLG-TTIKNAVVTVPAYFNDSQRQ 160 (279)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~~~isvP~~~~~~~r~ 160 (279)
.+-.+.-.++...+++|+++....... .....+.+.+|..-++.+|+
T Consensus 71 --------------------------------kdGVIAd~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErr 118 (342)
T COG1077 71 --------------------------------KDGVIADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERR 118 (342)
T ss_pred --------------------------------CCcEeecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHH
Confidence 112345566788888888888764333 34457999999999999999
Q ss_pred HHHHHHHHcCCceeeeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCCchhHHH
Q 036208 161 ATKDAGVISGLNVMRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFD 240 (279)
Q Consensus 161 ~l~~a~~~ag~~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg~~id 240 (279)
++++++..+|...+.+++||.|||+.....-. .+..-++||+||||||++++++..-. . +....+||+.+|
T Consensus 119 Ai~ea~~~aGa~~V~lieEp~aAAIGaglpi~----ep~G~mvvDIGgGTTevaVISlggiv----~-~~Sirv~GD~~D 189 (342)
T COG1077 119 AIKEAAESAGAREVYLIEEPMAAAIGAGLPIM----EPTGSMVVDIGGGTTEVAVISLGGIV----S-SSSVRVGGDKMD 189 (342)
T ss_pred HHHHHHHhccCceEEEeccHHHHHhcCCCccc----CCCCCEEEEeCCCceeEEEEEecCEE----E-EeeEEEecchhh
Confidence 99999999999999999999999999887666 66788999999999999999988833 2 344899999999
Q ss_pred HHHHHHHHHHHHh
Q 036208 241 NRMVNHFVQEFKR 253 (279)
Q Consensus 241 ~~l~~~l~~~~~~ 253 (279)
+.+.+|++++|+-
T Consensus 190 e~Ii~yvr~~~nl 202 (342)
T COG1077 190 EAIIVYVRKKYNL 202 (342)
T ss_pred HHHHHHHHHHhCe
Confidence 9999999887764
No 28
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.82 E-value=4.2e-19 Score=143.72 Aligned_cols=116 Identities=22% Similarity=0.357 Sum_probs=98.6
Q ss_pred EeHHHHHHHHHHHHHHHHHHHhCCcccceEEeeCCCCCHHHHHHHHHHHHHcCCceeeeecchhHHHHHhhhccCCCCCC
Q 036208 118 FSAEEISSMVLNKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQATKDAGVISGLNVMRIINEPTAAAIAYGLDKKAGSTG 197 (279)
Q Consensus 118 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~isvP~~~~~~~r~~l~~a~~~ag~~~~~~i~e~~Aaa~~~~~~~~~~~~~ 197 (279)
+..-+..+.+|+++++.++..++.....++++||++|++.+|+++.++++.+|++.+.++.||.|++++|...
T Consensus 36 I~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~------- 108 (239)
T TIGR02529 36 VVDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK------- 108 (239)
T ss_pred EEEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC-------
Confidence 3445668999999999998888888889999999999999999999999999999999999999999987532
Q ss_pred CeEEEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCCchhHHHHHHHHHH
Q 036208 198 EKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHF 247 (279)
Q Consensus 198 ~~~vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l 247 (279)
..+++|+|+||||+++++.+. + +. ..+..+||++||+.|.+.+
T Consensus 109 --~~~vvDiGggtt~i~i~~~G~--i--~~-~~~~~~GG~~it~~Ia~~~ 151 (239)
T TIGR02529 109 --NGAVVDVGGGTTGISILKKGK--V--IY-SADEPTGGTHMSLVLAGAY 151 (239)
T ss_pred --CcEEEEeCCCcEEEEEEECCe--E--EE-EEeeecchHHHHHHHHHHh
Confidence 259999999999999986443 2 22 3347899999999987765
No 29
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.74 E-value=6.3e-16 Score=127.39 Aligned_cols=114 Identities=25% Similarity=0.394 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcccceEEeeCCCCCHHHHHHHHHHHHHcCCceeeeecchhHHHHHhhhccCCCCCCCeE
Q 036208 121 EEISSMVLNKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQATKDAGVISGLNVMRIINEPTAAAIAYGLDKKAGSTGEKN 200 (279)
Q Consensus 121 ~~~~~~~l~~l~~~~~~~~~~~~~~~~isvP~~~~~~~r~~l~~a~~~ag~~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~ 200 (279)
.+.....|+++++.++...+.....++++||..++..+++.+.++++.+|++...++.||.|++.++... .
T Consensus 66 i~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~---------~ 136 (267)
T PRK15080 66 FIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID---------N 136 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCC---------C
Confidence 4557788899999998887877888999999999999999999999999999999999999999876431 1
Q ss_pred EEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCCchhHHHHHHHHHHH
Q 036208 201 VLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFV 248 (279)
Q Consensus 201 vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~ 248 (279)
.+++|||||||++++++-+ .+ +.. .+.++||.+||+.|.+++.
T Consensus 137 ~~vvDIGggtt~i~v~~~g--~~--~~~-~~~~~GG~~it~~Ia~~l~ 179 (267)
T PRK15080 137 GAVVDIGGGTTGISILKDG--KV--VYS-ADEPTGGTHMSLVLAGAYG 179 (267)
T ss_pred cEEEEeCCCcEEEEEEECC--eE--EEE-ecccCchHHHHHHHHHHhC
Confidence 5899999999999998643 32 222 3579999999999988764
No 30
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.54 E-value=3.5e-13 Score=118.30 Aligned_cols=89 Identities=22% Similarity=0.317 Sum_probs=71.5
Q ss_pred HHHHHHHHHHcCCceeeeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCCchhH
Q 036208 159 RQATKDAGVISGLNVMRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGED 238 (279)
Q Consensus 159 r~~l~~a~~~ag~~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg~~ 238 (279)
.+.+.++++.||++...++.||.|+|.+++...+ ....++++|+||||||+++++ .+.+. .....++||++
T Consensus 168 ~~~~~~a~~~aGl~v~~iv~ep~Aaa~a~l~~~e----~~~gv~vvDiGggtTdisv~~--~G~l~---~~~~i~~GG~~ 238 (420)
T PRK09472 168 AKNIVKAVERCGLKVDQLIFAGLASSYAVLTEDE----RELGVCVVDIGGGTMDIAVYT--GGALR---HTKVIPYAGNV 238 (420)
T ss_pred HHHHHHHHHHcCCeEeeEEehhhHHHHHhcChhh----hhcCeEEEEeCCCceEEEEEE--CCEEE---EEeeeechHHH
Confidence 5566789999999999999999999999876544 567899999999999999997 33321 23348999999
Q ss_pred HHHHHHHHH------HHHHHhhhC
Q 036208 239 FDNRMVNHF------VQEFKRKNK 256 (279)
Q Consensus 239 id~~l~~~l------~~~~~~~~~ 256 (279)
+++.|...+ .++++..++
T Consensus 239 it~dIa~~l~i~~~~AE~lK~~~g 262 (420)
T PRK09472 239 VTSDIAYAFGTPPSDAEAIKVRHG 262 (420)
T ss_pred HHHHHHHHhCcCHHHHHHHHHhcc
Confidence 999998877 666765554
No 31
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.53 E-value=5.4e-13 Score=114.70 Aligned_cols=218 Identities=22% Similarity=0.269 Sum_probs=130.6
Q ss_pred CEEEEEcCCcceEEEEE--eCC-ceEEEecCCCCcccceEEEEcCCceeecHHHHhhhhhCcCcccccchhhcCCCCCCh
Q 036208 8 PAIGIDLGTTYSCVGVW--QHD-RVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDP 84 (279)
Q Consensus 8 ~vvGID~Gt~~t~v~~~--~~~-~~~~v~~~~~~~~~ps~i~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~~l~~~~~~~ 84 (279)
.++|+|+||+++++.+. .++ .++++..... ||-- ..++. +.--.+..+ ..+.++....+..|....+-
T Consensus 7 ~iv~LDIGTskV~~lVge~~~~g~i~iig~g~~----~SrG-ik~G~-I~di~~~~~---sI~~av~~AE~mag~~i~~v 77 (418)
T COG0849 7 LIVGLDIGTSKVKALVGELRPDGRLNIIGVGSH----PSRG-IKKGV-IVDLDAAAQ---SIKKAVEAAERMAGCEIKSV 77 (418)
T ss_pred eEEEEEccCcEEEEEEEEEcCCCeEEEEeeecc----cCcc-cccce-EEcHHHHHH---HHHHHHHHHHHhcCCCcceE
Confidence 89999999999999887 344 4666542111 1111 11111 111111111 12333334445555543311
Q ss_pred hHhhccccCCceEEecCCCcceEEEEeCCceeeEeHHHHHHHHHHHHHHHHHHHhCCcccceEEeeCCCCC---------
Q 036208 85 SVQSDMKLWPFKVIAGAGDKPMIVVNYKGEEKQFSAEEISSMVLNKMKEIAEAYLGTTIKNAVVTVPAYFN--------- 155 (279)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~isvP~~~~--------- 155 (279)
.+ ..+...+... .....+++.++ ..++.++ ++.+.+.|+.....+...+.-..|-.|.
T Consensus 78 ~v-----s~sG~~i~s~--~~~g~v~i~~~-~eIt~~D-----I~rvl~~A~~~~~~~~~~ilh~~p~~y~vD~~~~I~d 144 (418)
T COG0849 78 IV-----SLSGNHIKSQ--NVNGEVSISEE-KEITQED-----IERVLEAAKAVAIPPEREILHVIPQEYIVDGQEGIKD 144 (418)
T ss_pred EE-----EeccceeEEE--eeEEEEEcCCC-CccCHHH-----HHHHHHHHHhhccCCCceEEEEeeeEEEECCccccCC
Confidence 10 0011111111 12222233332 4444444 4466666665544433344434444443
Q ss_pred -------------------HHHHHHHHHHHHHcCCceeeeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcceEEEEE
Q 036208 156 -------------------DSQRQATKDAGVISGLNVMRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVSLL 216 (279)
Q Consensus 156 -------------------~~~r~~l~~a~~~ag~~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd~sv~ 216 (279)
..--+.|.+|++++|++...++.+|.|++.+.+...+ +.-++++||+|+||||+++|
T Consensus 145 P~gm~G~rL~v~vhvit~~~~~~~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~dE----kelGv~lIDiG~GTTdIai~ 220 (418)
T COG0849 145 PLGMSGVRLEVEVHVITGPKNILENLEKCVERAGLKVDNIVLEPLASALAVLTEDE----KELGVALIDIGGGTTDIAIY 220 (418)
T ss_pred ccccccceEEEEEEEEEcchHHHHHHHHHHHHhCCCeeeEEEehhhhhhhccCccc----HhcCeEEEEeCCCcEEEEEE
Confidence 3347788999999999999999999999999998777 78899999999999999999
Q ss_pred eEeCCeEEEEEEeCCCCCchhHHHHHHHHHH------HHHHHhhhC
Q 036208 217 TIEEGIFEVKATAGDTHLGGEDFDNRMVNHF------VQEFKRKNK 256 (279)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l------~~~~~~~~~ 256 (279)
+-+... +....++||++++.+|..-+ .|+++.+++
T Consensus 221 ~~G~l~-----~~~~ipvgG~~vT~DIa~~l~t~~~~AE~iK~~~g 261 (418)
T COG0849 221 KNGALR-----YTGVIPVGGDHVTKDIAKGLKTPFEEAERIKIKYG 261 (418)
T ss_pred ECCEEE-----EEeeEeeCccHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 854422 24448999999999999877 456666665
No 32
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.52 E-value=6.3e-13 Score=115.37 Aligned_cols=180 Identities=16% Similarity=0.177 Sum_probs=122.8
Q ss_pred EEEEEcCCcceEEEEEeCCceEEEecCCCCcccceEEEEcC----------CceeecHHHHhhhhhCcCcccccchhhcC
Q 036208 9 AIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTD----------TERLIGDAAKNQVAMNPTNTVFDAKRLIG 78 (279)
Q Consensus 9 vvGID~Gt~~t~v~~~~~~~~~~v~~~~~~~~~ps~i~~~~----------~~~~~G~~a~~~~~~~~~~~~~~~k~~l~ 78 (279)
.|.||+||.++++++..++.|..+. ||+++... ....+|++|...... ....
T Consensus 1 ~iViD~Gs~~~r~G~a~~~~p~~~~--------ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~~~-~~~~--------- 62 (371)
T cd00012 1 AVVIDNGSGTIKAGFAGEDAPRVVF--------PSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGL-GLEL--------- 62 (371)
T ss_pred CEEEECCCCeEEEEeCCCCCCceEe--------eccceeecCcccccccCCCceEEchhhhhCCCC-ceEE---------
Confidence 3789999999999998766444433 77776653 234577766432110 0000
Q ss_pred CCCCChhHhhccccCCceEEecCCCcceEEEEeCCceeeEeHHHHHHHHHHHHHHHHHHHhCCcccceEEeeCCCCCHHH
Q 036208 79 RRFSDPSVQSDMKLWPFKVIAGAGDKPMIVVNYKGEEKQFSAEEISSMVLNKMKEIAEAYLGTTIKNAVVTVPAYFNDSQ 158 (279)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~isvP~~~~~~~ 158 (279)
.+|+ ....+...+.+..+++++...... .......+++++|..++...
T Consensus 63 -------------~~P~------------------~~G~i~d~~~~e~~~~~~~~~~l~-~~~~~~~vvl~~p~~~~~~~ 110 (371)
T cd00012 63 -------------IYPI------------------EHGIVVDWDDMEKIWDHLFFNELK-VNPEEHPVLLTEPPLNPKSN 110 (371)
T ss_pred -------------cccc------------------cCCEEeCHHHHHHHHHHHHHHhcC-CCCCCCceEEecCCCCCHHH
Confidence 0000 011234556677888888765322 12334689999999999888
Q ss_pred HHHHHH-HHHHcCCceeeeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCCchh
Q 036208 159 RQATKD-AGVISGLNVMRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGE 237 (279)
Q Consensus 159 r~~l~~-a~~~ag~~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg~ 237 (279)
|+.+.+ +.+.++++.+.+++++.++++++.. .+.+|||+|+++|+++.+.-+ .. +.......++||.
T Consensus 111 r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~---------~~~lVVDiG~~~t~i~pv~~G--~~-~~~~~~~~~~GG~ 178 (371)
T cd00012 111 REKTTEIMFETFNVPALYVAIQAVLSLYASGR---------TTGLVVDSGDGVTHVVPVYDG--YV-LPHAIKRLDLAGR 178 (371)
T ss_pred HHHHHHHhhccCCCCEEEEechHHHHHHhcCC---------CeEEEEECCCCeeEEEEEECC--EE-chhhheeccccHH
Confidence 888866 5777899999999999999987653 688999999999999877532 21 1112234789999
Q ss_pred HHHHHHHHHHHHH
Q 036208 238 DFDNRMVNHFVQE 250 (279)
Q Consensus 238 ~id~~l~~~l~~~ 250 (279)
++|+.|.+++.++
T Consensus 179 ~l~~~l~~~l~~~ 191 (371)
T cd00012 179 DLTRYLKELLRER 191 (371)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998654
No 33
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=99.52 E-value=7.8e-13 Score=114.90 Aligned_cols=179 Identities=18% Similarity=0.226 Sum_probs=124.3
Q ss_pred CEEEEEcCCcceEEEEEeCCceEEEecCCCCcccceEEEEcCCc---------eeecHHHHhhhhhCcCcccccchhhcC
Q 036208 8 PAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTE---------RLIGDAAKNQVAMNPTNTVFDAKRLIG 78 (279)
Q Consensus 8 ~vvGID~Gt~~t~v~~~~~~~~~~v~~~~~~~~~ps~i~~~~~~---------~~~G~~a~~~~~~~~~~~~~~~k~~l~ 78 (279)
..|+||+||.++++++..++.|..+. ||+++..... .++|++|.... ... .+.
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~~~--------ps~v~~~~~~~~~~~~~~~~~~G~~a~~~~----~~~--~~~---- 63 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQVVF--------PSIVGRPKDGKGMVGDAKDTFVGDEAQEKR----GGL--ELK---- 63 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcEEc--------cceeeEecccccccCCCcceEecchhhhcC----CCc--eec----
Confidence 36999999999999998766665543 8888875322 35676653211 000 000
Q ss_pred CCCCChhHhhccccCCceEEecCCCcceEEEEeCCceeeEeHHHHHHHHHHHHHHHHHHHhCCcccceEEeeCCCCCHHH
Q 036208 79 RRFSDPSVQSDMKLWPFKVIAGAGDKPMIVVNYKGEEKQFSAEEISSMVLNKMKEIAEAYLGTTIKNAVVTVPAYFNDSQ 158 (279)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~isvP~~~~~~~ 158 (279)
+|+ ....+...+.+..+++++...... .......++++.|...+..+
T Consensus 64 --------------~P~------------------~~G~i~d~~~~e~i~~~~~~~~l~-~~~~~~~vll~~p~~~~~~~ 110 (373)
T smart00268 64 --------------YPI------------------EHGIVENWDDMEKIWDYTFFNELR-VEPEEHPVLLTEPPMNPKSN 110 (373)
T ss_pred --------------CCC------------------cCCEEeCHHHHHHHHHHHHhhhcC-CCCccCeeEEecCCCCCHHH
Confidence 010 111345567788888888874211 12334578999999888999
Q ss_pred HHHHHHHH-HHcCCceeeeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCCchh
Q 036208 159 RQATKDAG-VISGLNVMRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGE 237 (279)
Q Consensus 159 r~~l~~a~-~~ag~~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg~ 237 (279)
|+.+.+.+ +.++++.+.+++++.++++++. ..+.+|||+|+++|+++.+. ++.. +.......++||.
T Consensus 111 r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g---------~~~~lVVDiG~~~t~v~pv~--~G~~-~~~~~~~~~~GG~ 178 (373)
T smart00268 111 REKILEIMFETFNFPALYIAIQAVLSLYASG---------RTTGLVIDSGDGVTHVVPVV--DGYV-LPHAIKRIDIAGR 178 (373)
T ss_pred HHHHHHHhhccCCCCeEEEeccHHHHHHhCC---------CCEEEEEecCCCcceEEEEE--CCEE-chhhheeccCcHH
Confidence 99998875 5779999999999999998765 46789999999999999775 2222 1122223689999
Q ss_pred HHHHHHHHHHHH
Q 036208 238 DFDNRMVNHFVQ 249 (279)
Q Consensus 238 ~id~~l~~~l~~ 249 (279)
++|+.|.+++.+
T Consensus 179 ~l~~~l~~~l~~ 190 (373)
T smart00268 179 DLTDYLKELLSE 190 (373)
T ss_pred HHHHHHHHHHHh
Confidence 999999998866
No 34
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.50 E-value=6e-13 Score=115.34 Aligned_cols=82 Identities=23% Similarity=0.300 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHcCCceeeeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCCch
Q 036208 157 SQRQATKDAGVISGLNVMRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGG 236 (279)
Q Consensus 157 ~~r~~l~~a~~~ag~~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg 236 (279)
...+.+.++++.||++...++.||.|+|.+++.... ....++++|+|+||||+++++.+. ... ....++||
T Consensus 158 ~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~~----~~~~~~vvDiG~gtt~i~i~~~g~--~~~---~~~i~~GG 228 (371)
T TIGR01174 158 TILRNLVKCVERCGLEVDNIVLSGLASAIAVLTEDE----KELGVCLIDIGGGTTDIAVYTGGS--IRY---TKVIPIGG 228 (371)
T ss_pred HHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcch----hcCCEEEEEeCCCcEEEEEEECCE--EEE---EeeecchH
Confidence 456778889999999999999999999998865433 456799999999999999996433 221 23478999
Q ss_pred hHHHHHHHHHH
Q 036208 237 EDFDNRMVNHF 247 (279)
Q Consensus 237 ~~id~~l~~~l 247 (279)
+++|+.+.+.+
T Consensus 229 ~~it~~i~~~l 239 (371)
T TIGR01174 229 NHITKDIAKAL 239 (371)
T ss_pred HHHHHHHHHHh
Confidence 99999987654
No 35
>PTZ00280 Actin-related protein 3; Provisional
Probab=99.35 E-value=2.1e-10 Score=100.86 Aligned_cols=128 Identities=16% Similarity=0.056 Sum_probs=88.1
Q ss_pred EeHHHHHHHHHHHHHHHHHHHhCCcccceEEeeCCCCCHHHHHHHHHH-HHHcCCceeeeecchhHHHHHhhhccCC-CC
Q 036208 118 FSAEEISSMVLNKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQATKDA-GVISGLNVMRIINEPTAAAIAYGLDKKA-GS 195 (279)
Q Consensus 118 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~isvP~~~~~~~r~~l~~a-~~~ag~~~~~~i~e~~Aaa~~~~~~~~~-~~ 195 (279)
+...+.+..+++++..... ........++++.|..++..+|+.+.+. .+..+++.+.+..++.++++++...... ..
T Consensus 78 I~dwd~~e~l~~~~~~~~L-~~~p~~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~ 156 (414)
T PTZ00280 78 VEDWDLMEKFWEQCIFKYL-RCEPEEHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKEL 156 (414)
T ss_pred eCCHHHHHHHHHHHHHHhh-ccCCCCCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhccccccccc
Confidence 4455667788887764321 1233334789999999999999998775 5556999999999999998876332221 01
Q ss_pred CCCeEEEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCCchhHHHHHHHHHHHH
Q 036208 196 TGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQ 249 (279)
Q Consensus 196 ~~~~~vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~ 249 (279)
....+-+|||+|.++|+++.+-- +..-. ......++||.++|+.|.++|.+
T Consensus 157 ~g~~tglVVDiG~~~T~i~PV~~--G~~l~-~~~~~~~~GG~~lt~~L~~lL~~ 207 (414)
T PTZ00280 157 GGTLTGTVIDSGDGVTHVIPVVD--GYVIG-SSIKHIPLAGRDITNFIQQMLRE 207 (414)
T ss_pred CCceeEEEEECCCCceEEEEEEC--CEEcc-cceEEecCcHHHHHHHHHHHHHH
Confidence 13346799999999999986542 32211 11123689999999999999865
No 36
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=99.32 E-value=3.3e-12 Score=96.61 Aligned_cols=107 Identities=25% Similarity=0.430 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHHHhCCcccceEEeeCCCCCHHHHHHHHHHHHHcCCceeeeecchhHHHHHhhhccCCCCCCCeEEEE
Q 036208 124 SSMVLNKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQATKDAGVISGLNVMRIINEPTAAAIAYGLDKKAGSTGEKNVLI 203 (279)
Q Consensus 124 ~~~~l~~l~~~~~~~~~~~~~~~~isvP~~~~~~~r~~l~~a~~~ag~~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlv 203 (279)
.-.+.+++++.+++.++...++..-++|+.-.....+...+.++.||++....++||+|+|.-..... -.|
T Consensus 74 aveiVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l~d---------g~V 144 (277)
T COG4820 74 AVEIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLDD---------GGV 144 (277)
T ss_pred HHHHHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhccCC---------CcE
Confidence 34567888899999999999999999999987777888888899999999999999999987555433 379
Q ss_pred EEecCcceEEEEEeEeCCeEEEEEEeCCCCCchhHHHHHHH
Q 036208 204 FDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMV 244 (279)
Q Consensus 204 vDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg~~id~~l~ 244 (279)
||+|||||-+++++-++-.+ +.+.+-||.+++..|+
T Consensus 145 VDiGGGTTGIsi~kkGkViy-----~ADEpTGGtHmtLvlA 180 (277)
T COG4820 145 VDIGGGTTGISIVKKGKVIY-----SADEPTGGTHMTLVLA 180 (277)
T ss_pred EEeCCCcceeEEEEcCcEEE-----eccCCCCceeEEEEEe
Confidence 99999999999998655322 3345666666655443
No 37
>PTZ00004 actin-2; Provisional
Probab=99.26 E-value=6.9e-10 Score=96.41 Aligned_cols=181 Identities=15% Similarity=0.174 Sum_probs=117.4
Q ss_pred CCCEEEEEcCCcceEEEEEeCCceEEEecCCCCcccceEEEEcCC----------ceeecHHHHhhhhhCcCcccccchh
Q 036208 6 EGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDT----------ERLIGDAAKNQVAMNPTNTVFDAKR 75 (279)
Q Consensus 6 ~~~vvGID~Gt~~t~v~~~~~~~~~~v~~~~~~~~~ps~i~~~~~----------~~~~G~~a~~~~~~~~~~~~~~~k~ 75 (279)
....|.||+|+.++++++..++.|..+. ||++...+. ..++|+++.... .. ..++
T Consensus 5 ~~~~vViD~Gs~~~k~G~ag~~~P~~~~--------ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~~-~~l~- 69 (378)
T PTZ00004 5 ETNAAVVDNGSGMVKAGFAGDDAPRCVF--------PSIVGRPKNPGIMVGMEEKDCYVGDEAQDKR-----GI-LTLK- 69 (378)
T ss_pred CCCeEEEECCCCeEEEeeCCCCCCCEEc--------cceeEEecccccccCcCCCceEECchhhccc-----cc-ceEc-
Confidence 4457999999999999998766665543 787776432 223454442110 00 0000
Q ss_pred hcCCCCCChhHhhccccCCceEEecCCCcceEEEEeCCceeeEeHHHHHHHHHHHHHHHHHHHhCCcccceEEeeCCCCC
Q 036208 76 LIGRRFSDPSVQSDMKLWPFKVIAGAGDKPMIVVNYKGEEKQFSAEEISSMVLNKMKEIAEAYLGTTIKNAVVTVPAYFN 155 (279)
Q Consensus 76 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~isvP~~~~ 155 (279)
+|+ ....+...+.+..+++++...-. ........+.++-|..++
T Consensus 70 -----------------~Pi------------------~~G~i~d~d~~e~i~~~~~~~~l-~v~~~~~pvllte~~~~~ 113 (378)
T PTZ00004 70 -----------------YPI------------------EHGIVTNWDDMEKIWHHTFYNEL-RVAPEEHPVLLTEAPLNP 113 (378)
T ss_pred -----------------ccC------------------cCCEEcCHHHHHHHHHHHHHhhc-ccCCccCcceeecCCCCc
Confidence 000 11123445667778877553211 112344578889999999
Q ss_pred HHHHHHHHHH-HHHcCCceeeeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCC
Q 036208 156 DSQRQATKDA-GVISGLNVMRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHL 234 (279)
Q Consensus 156 ~~~r~~l~~a-~~~ag~~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~ 234 (279)
..+|+.+.+. .+..+++.+.+..++.++++++. ..+-+|||+|.+.|+++.+- ++..- .......++
T Consensus 114 ~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g---------~~tglVVDiG~~~t~v~pV~--dG~~l-~~~~~~~~~ 181 (378)
T PTZ00004 114 KANREKMTQIMFETHNVPAMYVAIQAVLSLYASG---------RTTGIVLDSGDGVSHTVPIY--EGYSL-PHAIHRLDV 181 (378)
T ss_pred HHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcC---------CceEEEEECCCCcEEEEEEE--CCEEe-ecceeeecc
Confidence 9999887664 66789999999999999988753 24679999999999997553 22221 122233689
Q ss_pred chhHHHHHHHHHHHH
Q 036208 235 GGEDFDNRMVNHFVQ 249 (279)
Q Consensus 235 Gg~~id~~l~~~l~~ 249 (279)
||.++|+.|.++|.+
T Consensus 182 GG~~lt~~L~~lL~~ 196 (378)
T PTZ00004 182 AGRDLTEYMMKILHE 196 (378)
T ss_pred cHHHHHHHHHHHHHh
Confidence 999999999998854
No 38
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=99.22 E-value=3.3e-10 Score=99.23 Aligned_cols=182 Identities=18% Similarity=0.220 Sum_probs=117.6
Q ss_pred CCCEEEEEcCCcceEEEEEeCCceEEEecCCCCcccceEEEEcCCc-----eeecHHHHhhhhhCcCcccccchhhcCCC
Q 036208 6 EGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTE-----RLIGDAAKNQVAMNPTNTVFDAKRLIGRR 80 (279)
Q Consensus 6 ~~~vvGID~Gt~~t~v~~~~~~~~~~v~~~~~~~~~ps~i~~~~~~-----~~~G~~a~~~~~~~~~~~~~~~k~~l~~~ 80 (279)
....|-||+|+.++++++..+..|..+. ||.+...... ..+|..+... .+...+.+ .+
T Consensus 3 ~~~~vViD~Gs~~~k~G~age~~P~~v~--------ps~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~---p~--- 65 (393)
T PF00022_consen 3 ENKPVVIDNGSSTIKAGFAGEDLPRVVI--------PSVVGRPRDKNSSNDYYVGDEALSP---RSNLELRS---PI--- 65 (393)
T ss_dssp SSSEEEEEECSSEEEEEETTSSS-SEEE--------ESEEEEESSSSSSSSCEETHHHHHT---GTGEEEEE---SE---
T ss_pred CCCEEEEECCCceEEEEECCCCCCCCcC--------CCccccccccccceeEEeecccccc---hhheeeee---ec---
Confidence 4568999999999999998666666543 8888765443 4678764321 11111100 00
Q ss_pred CCChhHhhccccCCceEEecCCCcceEEEEeCCceeeEeHHHHHHHHHHHHHHHHHHHhCCcccceEEeeCCCCCHHHHH
Q 036208 81 FSDPSVQSDMKLWPFKVIAGAGDKPMIVVNYKGEEKQFSAEEISSMVLNKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQ 160 (279)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~isvP~~~~~~~r~ 160 (279)
....+...+.+..+++++.... -........++++.|..++...|+
T Consensus 66 ---------------------------------~~g~i~~~~~~e~i~~~~~~~~-l~~~~~~~~vll~~~~~~~~~~r~ 111 (393)
T PF00022_consen 66 ---------------------------------ENGVIVDWDALEEIWDYIFSNL-LKVDPSDHPVLLTEPPFNPRSQRE 111 (393)
T ss_dssp ---------------------------------ETTEESSHHHHHHHHHHHHHTT-T-SSGGGSEEEEEESTT--HHHHH
T ss_pred ---------------------------------cccccccccccccccccccccc-cccccccceeeeeccccCCchhhh
Confidence 1112344566777888777653 122344457999999999999999
Q ss_pred HHHHH-HHHcCCceeeeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCCchhHH
Q 036208 161 ATKDA-GVISGLNVMRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDF 239 (279)
Q Consensus 161 ~l~~a-~~~ag~~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg~~i 239 (279)
.+.+. .+..+++.+.++.++.++++++... +-+|||+|.+.|.++.+- ++.. +.......++||.++
T Consensus 112 ~l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~---------tglVVD~G~~~t~v~pV~--dG~~-~~~~~~~~~~GG~~l 179 (393)
T PF00022_consen 112 KLAEILFEKFGVPSVYFIPSPLLALYASGRT---------TGLVVDIGYSSTSVVPVV--DGYV-LPHSIKRSPIGGDDL 179 (393)
T ss_dssp HHHHHHHHTS--SEEEEEEHHHHHHHHTTBS---------SEEEEEESSS-EEEEEEE--TTEE--GGGBEEES-SHHHH
T ss_pred hhhhhhhcccccceeeeeecccccccccccc---------cccccccceeeeeeeeee--eccc-cccccccccccHHHH
Confidence 88764 6678999999999999998877543 569999999999987653 3221 111112368999999
Q ss_pred HHHHHHHHHHH
Q 036208 240 DNRMVNHFVQE 250 (279)
Q Consensus 240 d~~l~~~l~~~ 250 (279)
++.|.++|.++
T Consensus 180 t~~l~~lL~~~ 190 (393)
T PF00022_consen 180 TEYLKELLKER 190 (393)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhh
Confidence 99999999874
No 39
>PTZ00281 actin; Provisional
Probab=99.22 E-value=1.1e-09 Score=95.03 Aligned_cols=184 Identities=15% Similarity=0.135 Sum_probs=119.2
Q ss_pred CCCCCCEEEEEcCCcceEEEEEeCCceEEEecCCCCcccceEEEEcCC----------ceeecHHHHhhhhhCcCccccc
Q 036208 3 GKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDT----------ERLIGDAAKNQVAMNPTNTVFD 72 (279)
Q Consensus 3 ~~~~~~vvGID~Gt~~t~v~~~~~~~~~~v~~~~~~~~~ps~i~~~~~----------~~~~G~~a~~~~~~~~~~~~~~ 72 (279)
+.+....|-||+|+.++++++..++.|..+. ||++...+. ..++|+++.... ....
T Consensus 2 ~~~~~~~vViD~Gs~~~k~G~age~~P~~i~--------ps~vg~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~--- 67 (376)
T PTZ00281 2 DGEDVQALVIDNGSGMCKAGFAGDDAPRAVF--------PSIVGRPRHTGVMVGMGQKDSYVGDEAQSKR---GILT--- 67 (376)
T ss_pred CCCcCCeEEEECCCCeEEEeeCCCCCCCeec--------cccceeecCcccccCcccCCeEECchhhccc---cCcE---
Confidence 3445557999999999999998777666543 777765322 223444432110 0000
Q ss_pred chhhcCCCCCChhHhhccccCCceEEecCCCcceEEEEeCCceeeEeHHHHHHHHHHHHHHHHHHHhCCcccceEEeeCC
Q 036208 73 AKRLIGRRFSDPSVQSDMKLWPFKVIAGAGDKPMIVVNYKGEEKQFSAEEISSMVLNKMKEIAEAYLGTTIKNAVVTVPA 152 (279)
Q Consensus 73 ~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~isvP~ 152 (279)
+ .+|+ ..-.+...+.+..+++++..... ........+.++-|.
T Consensus 68 l------------------~~Pi------------------~~G~i~dwd~~e~l~~~~f~~~l-~v~p~~~pvllte~~ 110 (376)
T PTZ00281 68 L------------------KYPI------------------EHGIVTNWDDMEKIWHHTFYNEL-RVAPEEHPVLLTEAP 110 (376)
T ss_pred E------------------eccC------------------cCCEEcCHHHHHHHHHHHHHhhc-cCCCccCeEEEecCC
Confidence 0 0000 11134455667778877764311 123444578889999
Q ss_pred CCCHHHHHHHHH-HHHHcCCceeeeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcceEEEEEeEeCCeEEEEEEeCC
Q 036208 153 YFNDSQRQATKD-AGVISGLNVMRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGD 231 (279)
Q Consensus 153 ~~~~~~r~~l~~-a~~~ag~~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~ 231 (279)
.++...|+.|.+ +.+..+++.+.+..++.++++++. ..+.+|||+|.+.|.++-+--+.. +......
T Consensus 111 ~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g---------~~tglVVDiG~~~t~v~PV~dG~~---~~~~~~~ 178 (376)
T PTZ00281 111 LNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG---------RTTGIVMDSGDGVSHTVPIYEGYA---LPHAILR 178 (376)
T ss_pred CCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcC---------CceEEEEECCCceEEEEEEEeccc---chhheee
Confidence 999999999977 567789999999999999988653 247799999999999874432211 1112223
Q ss_pred CCCchhHHHHHHHHHHHH
Q 036208 232 THLGGEDFDNRMVNHFVQ 249 (279)
Q Consensus 232 ~~~Gg~~id~~l~~~l~~ 249 (279)
.++||.++++.|.+.|.+
T Consensus 179 ~~~GG~~lt~~L~~lL~~ 196 (376)
T PTZ00281 179 LDLAGRDLTDYMMKILTE 196 (376)
T ss_pred ccCcHHHHHHHHHHHHHh
Confidence 689999999999988854
No 40
>PTZ00452 actin; Provisional
Probab=99.20 E-value=1.7e-09 Score=93.62 Aligned_cols=180 Identities=17% Similarity=0.168 Sum_probs=118.0
Q ss_pred CCEEEEEcCCcceEEEEEeCCceEEEecCCCCcccceEEEEcCCc----------eeecHHHHhhhhhCcCcccccchhh
Q 036208 7 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTE----------RLIGDAAKNQVAMNPTNTVFDAKRL 76 (279)
Q Consensus 7 ~~vvGID~Gt~~t~v~~~~~~~~~~v~~~~~~~~~ps~i~~~~~~----------~~~G~~a~~~~~~~~~~~~~~~k~~ 76 (279)
...|-||+|+.++++++..++.|..+- ||++...... .++|++|.... ....++.
T Consensus 5 ~~~vViD~Gs~~~k~G~age~~P~~i~--------ps~vg~~~~~~~~~~~~~~~~~iG~~~~~~~------~~~~l~~- 69 (375)
T PTZ00452 5 YPAVVIDNGSGYCKIGIAGDDAPTSCF--------PAIVGRSKQNDGIFSTFNKEYYVGEEAQAKR------GVLAIKE- 69 (375)
T ss_pred CCEEEEECCCCeEEEeeCCCCCcCEEe--------cceeEEECCccccccccccceEEChhhhccc------cCcEEcc-
Confidence 347889999999999999777776553 7777765322 23454442110 0000000
Q ss_pred cCCCCCChhHhhccccCCceEEecCCCcceEEEEeCCceeeEeHHHHHHHHHHHHHHHHHHHhCCcccceEEeeCCCCCH
Q 036208 77 IGRRFSDPSVQSDMKLWPFKVIAGAGDKPMIVVNYKGEEKQFSAEEISSMVLNKMKEIAEAYLGTTIKNAVVTVPAYFND 156 (279)
Q Consensus 77 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~isvP~~~~~ 156 (279)
| + ....+...+.+..+++|+..... ..+.....+.++-|+..+.
T Consensus 70 -----------------P----------------i--~~G~I~dwd~~e~iw~~~f~~~l-~v~p~~~pvlitE~~~~~~ 113 (375)
T PTZ00452 70 -----------------P----------------I--QNGIINSWDDIEIIWHHAFYNEL-CMSPEDQPVFMTDAPMNSK 113 (375)
T ss_pred -----------------c----------------C--cCCEEcCHHHHHHHHHHHHHhhc-CCCcccCceeeecCCCCCH
Confidence 0 0 11134455667778887764321 1344456889999999999
Q ss_pred HHHHHHHHH-HHHcCCceeeeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCCc
Q 036208 157 SQRQATKDA-GVISGLNVMRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLG 235 (279)
Q Consensus 157 ~~r~~l~~a-~~~ag~~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~G 235 (279)
..|+.|.+. .+..+++.+.+...+.++++++. ..+-+|||+|.+.|.++-+- ++..-.-+. ...++|
T Consensus 114 ~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g---------~~tglVVDiG~~~t~v~PV~--dG~~l~~~~-~r~~~g 181 (375)
T PTZ00452 114 FNRERMTQIMFETFNTPCLYISNEAVLSLYTSG---------KTIGLVVDSGEGVTHCVPVF--EGHQIPQAI-TKINLA 181 (375)
T ss_pred HHHHHHHHHHhhccCCceEEEechHHHHHHHCC---------CceeeeecCCCCcceEEEEE--CCEEeccce-EEeecc
Confidence 999998775 56678888899988888888643 24779999999999987543 332211112 226899
Q ss_pred hhHHHHHHHHHHHH
Q 036208 236 GEDFDNRMVNHFVQ 249 (279)
Q Consensus 236 g~~id~~l~~~l~~ 249 (279)
|.++++.|.++|.+
T Consensus 182 G~~lt~~L~~lL~~ 195 (375)
T PTZ00452 182 GRLCTDYLTQILQE 195 (375)
T ss_pred chHHHHHHHHHHHh
Confidence 99999999888754
No 41
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=99.19 E-value=2.2e-09 Score=89.00 Aligned_cols=186 Identities=17% Similarity=0.184 Sum_probs=126.9
Q ss_pred CCCCCCEEEEEcCCcceEEEEEeCCceEEEecCCCCcccceEEEEc--------CC-ceeecHHHHhhhhhCcCcccccc
Q 036208 3 GKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFT--------DT-ERLIGDAAKNQVAMNPTNTVFDA 73 (279)
Q Consensus 3 ~~~~~~vvGID~Gt~~t~v~~~~~~~~~~v~~~~~~~~~ps~i~~~--------~~-~~~~G~~a~~~~~~~~~~~~~~~ 73 (279)
+.+....|-||.|+-.|+++|...+-|+.+. ||++... ++ ..+++..|.... +....+
T Consensus 7 ggdEv~alViDpGS~~traGyaged~Pk~il--------PS~~G~~tk~~~d~~~~~~~y~~~~ai~~p-r~gmEv---- 73 (426)
T KOG0679|consen 7 GGDEVSALVIDPGSHTTRAGYAGEDSPKAIL--------PSVYGKVTKTDGDAEDKKGYYVDENAIHVP-RPGMEV---- 73 (426)
T ss_pred cccccceEEEeCCCceEeccccCCCCccccc--------cceeeeeecccCccccccceEeechhccCC-CCCCee----
Confidence 4556678999999999999999777666654 8887752 11 123444332110 000000
Q ss_pred hhhcCCCCCChhHhhccccCCceEEecCCCcceEEEEeCCceeeEeHHHHHHHHHHHHHHHHHHHhCCcccceEEeeCCC
Q 036208 74 KRLIGRRFSDPSVQSDMKLWPFKVIAGAGDKPMIVVNYKGEEKQFSAEEISSMVLNKMKEIAEAYLGTTIKNAVVTVPAY 153 (279)
Q Consensus 74 k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~isvP~~ 153 (279)
+..+ +.-.+...+++.+.++|.++... ..+.....+.+|-|++
T Consensus 74 ~~~i------------------------------------~nGlv~dWD~~~~~w~~~~~~~L-k~~p~ehP~litEp~w 116 (426)
T KOG0679|consen 74 KTPI------------------------------------KNGLVEDWDLFEMQWRYAYKNQL-KVNPEEHPVLITEPPW 116 (426)
T ss_pred ccch------------------------------------hcCCcccHHHHHHHHHHHHhhhh-hcCccccceeeecCCC
Confidence 0000 00124567788888888885332 2345556899999998
Q ss_pred CCHHHHHHHHH-HHHHcCCceeeeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcceEEEEEeEeCCeEEEEEEeCCC
Q 036208 154 FNDSQRQATKD-AGVISGLNVMRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDT 232 (279)
Q Consensus 154 ~~~~~r~~l~~-a~~~ag~~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~ 232 (279)
-+.+.|+.+.+ +.+...++..+++.+++++|++- ...+.||||+|+++|.++-+- ++.+-..+... .
T Consensus 117 N~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~---------GrstalVvDiGa~~~svsPV~--DG~Vlqk~vvk-s 184 (426)
T KOG0679|consen 117 NTRANREKLTELMFEKLNVPAFYLAKTAVCTAFAN---------GRSTALVVDIGATHTSVSPVH--DGYVLQKGVVK-S 184 (426)
T ss_pred CcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhc---------CCCceEEEEecCCCceeeeee--cceEeeeeeEe-c
Confidence 88899998877 46777888889999999988854 346789999999999888542 44444444444 6
Q ss_pred CCchhHHHHHHHHHHHHH
Q 036208 233 HLGGEDFDNRMVNHFVQE 250 (279)
Q Consensus 233 ~~Gg~~id~~l~~~l~~~ 250 (279)
.+||..|+..+.+.+..+
T Consensus 185 ~laGdFl~~~~~q~l~~~ 202 (426)
T KOG0679|consen 185 PLAGDFLNDQCRQLLEPK 202 (426)
T ss_pred ccchHHHHHHHHHHHhhc
Confidence 899999999999988765
No 42
>PTZ00466 actin-like protein; Provisional
Probab=99.10 E-value=5.1e-09 Score=90.83 Aligned_cols=178 Identities=16% Similarity=0.196 Sum_probs=117.0
Q ss_pred CEEEEEcCCcceEEEEEeCCceEEEecCCCCcccceEEEEcCCc----------eeecHHHHhhhhhCcCcccccchhhc
Q 036208 8 PAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTE----------RLIGDAAKNQVAMNPTNTVFDAKRLI 77 (279)
Q Consensus 8 ~vvGID~Gt~~t~v~~~~~~~~~~v~~~~~~~~~ps~i~~~~~~----------~~~G~~a~~~~~~~~~~~~~~~k~~l 77 (279)
..|-||+|+.++++++..++.|.++- ||++...+.. .++|+++.... . . ..+
T Consensus 13 ~~iViD~GS~~~K~G~ag~~~P~~~~--------ps~vg~~k~~~~~~~~~~~~~~vG~~~~~~~---~--~-~~l---- 74 (380)
T PTZ00466 13 QPIIIDNGTGYIKAGFAGEDVPNLVF--------PSYVGRPKYKRVMAGAVEGNIFVGNKAEEYR---G--L-LKV---- 74 (380)
T ss_pred CeEEEECCCCcEEEeeCCCCCCCEec--------cceeeeecCccccccCCCCCeEECchhhhhC---c--C-cee----
Confidence 46889999999999998777666543 7777664322 23444442110 0 0 000
Q ss_pred CCCCCChhHhhccccCCceEEecCCCcceEEEEeCCceeeEeHHHHHHHHHHHHHHHHHHHhCCcccceEEeeCCCCCHH
Q 036208 78 GRRFSDPSVQSDMKLWPFKVIAGAGDKPMIVVNYKGEEKQFSAEEISSMVLNKMKEIAEAYLGTTIKNAVVTVPAYFNDS 157 (279)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~isvP~~~~~~ 157 (279)
.+|+ ..-.+...+.+..+++++.+... .+.....+.++-|+.++..
T Consensus 75 --------------~~Pi------------------~~G~v~dwd~~e~iw~~~f~~l~--v~~~~~pvllte~~~~~~~ 120 (380)
T PTZ00466 75 --------------TYPI------------------NHGIIENWNDMENIWIHVYNSMK--INSEEHPVLLTEAPLNPQK 120 (380)
T ss_pred --------------Cccc------------------cCCeECCHHHHHHHHHHHHhhcc--cCCccCeEEEecCccccHH
Confidence 0010 11134556667888888764322 2334457888999999999
Q ss_pred HHHHHHHH-HHHcCCceeeeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCCch
Q 036208 158 QRQATKDA-GVISGLNVMRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGG 236 (279)
Q Consensus 158 ~r~~l~~a-~~~ag~~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg 236 (279)
+|+.|.+. .+..+++.+.+..++.++++++. ..+-+|||+|.+.|.+.-+- ++.. +.......++||
T Consensus 121 ~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g---------~~tglVVD~G~~~t~v~PV~--~G~~-~~~~~~~~~~GG 188 (380)
T PTZ00466 121 NKEKIAEVFFETFNVPALFISIQAILSLYSCG---------KTNGTVLDCGDGVCHCVSIY--EGYS-ITNTITRTDVAG 188 (380)
T ss_pred HHHHHHHHHhccCCCCeEEEecchHHHHHhcC---------CceEEEEeCCCCceEEEEEE--CCEE-eecceeEecCch
Confidence 99998664 66678899999999988888653 25789999999999997443 3222 111222368999
Q ss_pred hHHHHHHHHHHHH
Q 036208 237 EDFDNRMVNHFVQ 249 (279)
Q Consensus 237 ~~id~~l~~~l~~ 249 (279)
.++++.|.++|.+
T Consensus 189 ~~lt~~L~~lL~~ 201 (380)
T PTZ00466 189 RDITTYLGYLLRK 201 (380)
T ss_pred hHHHHHHHHHHHh
Confidence 9999999988753
No 43
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=99.00 E-value=2.8e-09 Score=92.01 Aligned_cols=83 Identities=18% Similarity=0.306 Sum_probs=58.6
Q ss_pred ceEEeeCCCCCHHHHHHHHHHHHH------------cCCceeeeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcceE
Q 036208 145 NAVVTVPAYFNDSQRQATKDAGVI------------SGLNVMRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFD 212 (279)
Q Consensus 145 ~~~isvP~~~~~~~r~~l~~a~~~------------ag~~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd 212 (279)
..+++-+. ..+++++++++. ||++...++. +.|++.+.+.. + +...+++||||||||+
T Consensus 90 ahIITg~~----~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avLse-E----ke~gVa~IDIGgGTT~ 159 (475)
T PRK10719 90 AVIITGET----ARKENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTLSE-E----RNTRVLNIDIGGGTAN 159 (475)
T ss_pred EEEEEech----hHHHHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHhhh-h----ccCceEEEEeCCCceE
Confidence 45666664 345566666665 5555444554 88888887743 4 7889999999999999
Q ss_pred EEEEeEeCCeEEEEEEeCCCCCchhHHHHH
Q 036208 213 VSLLTIEEGIFEVKATAGDTHLGGEDFDNR 242 (279)
Q Consensus 213 ~sv~~~~~~~~~~~~~~~~~~~Gg~~id~~ 242 (279)
+++|.-+.. + +....++||++++..
T Consensus 160 iaVf~~G~l----~-~T~~l~vGG~~IT~D 184 (475)
T PRK10719 160 YALFDAGKV----I-DTACLNVGGRLIETD 184 (475)
T ss_pred EEEEECCEE----E-EEEEEecccceEEEC
Confidence 999985542 2 234478999888776
No 44
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=99.00 E-value=4.5e-09 Score=89.26 Aligned_cols=107 Identities=20% Similarity=0.209 Sum_probs=79.9
Q ss_pred cccceEEeeCCCCCHHHHHHHHHHHHHc---------CCceeeeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcceE
Q 036208 142 TIKNAVVTVPAYFNDSQRQATKDAGVIS---------GLNVMRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFD 212 (279)
Q Consensus 142 ~~~~~~isvP~~~~~~~r~~l~~a~~~a---------g~~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd 212 (279)
.+..+++..|..+...+++.|++.+... .+..+.+++||.+|.+.+.............+++||+|++|||
T Consensus 101 ~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD 180 (320)
T TIGR03739 101 EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFD 180 (320)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeee
Confidence 4557999999999988999999886542 3466899999999988877644322235667899999999999
Q ss_pred EEEEeEeCCeEEEEEEeCCCCCchhHHHHHHHHHHHHHH
Q 036208 213 VSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEF 251 (279)
Q Consensus 213 ~sv~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~~~ 251 (279)
+.+++ +..+ ....+.+.+.|...+-+.+.+.|.+++
T Consensus 181 ~~~~~--~~~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~ 216 (320)
T TIGR03739 181 WLVAR--GMRL-VQKRSGSVNGGMSDIYRLLAAEISKDI 216 (320)
T ss_pred eehcc--CCEE-cccccCCchhHHHHHHHHHHHHHHhhc
Confidence 98774 3333 233344478898888888888886654
No 45
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=98.98 E-value=3.3e-08 Score=84.65 Aligned_cols=101 Identities=16% Similarity=0.171 Sum_probs=70.0
Q ss_pred ceEEeeCCCCCHHH-HHHHHHHHHHc------------CCceeeeecchhHHHHHhhhccCC----CCCCCeEEEEEEec
Q 036208 145 NAVVTVPAYFNDSQ-RQATKDAGVIS------------GLNVMRIINEPTAAAIAYGLDKKA----GSTGEKNVLIFDLG 207 (279)
Q Consensus 145 ~~~isvP~~~~~~~-r~~l~~a~~~a------------g~~~~~~i~e~~Aaa~~~~~~~~~----~~~~~~~vlvvDiG 207 (279)
.++...|..+-..+ ++.|++..... .+..+.+++||.++.+.+...... .......+++||+|
T Consensus 114 ~l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG 193 (344)
T PRK13917 114 VVATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFG 193 (344)
T ss_pred EEEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcC
Confidence 34569998885444 46677665331 234578899999998877665332 12245678999999
Q ss_pred CcceEEEEEeEeCCeEEEEEEeCCCCCchhHHHHHHHHHHH
Q 036208 208 GGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFV 248 (279)
Q Consensus 208 ~gttd~sv~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~ 248 (279)
++|||+++++ .+.+. ...+...+.|..++.+.+.+.+.
T Consensus 194 ~~TtD~~v~~--~~~~~-~~~s~s~~~G~~~~~~~I~~~i~ 231 (344)
T PRK13917 194 SGTTDLDTIQ--NLKRV-EEESFVIPKGTIDVYKRIASHIS 231 (344)
T ss_pred CCcEEEEEEe--CcEEc-ccccccccchHHHHHHHHHHHHH
Confidence 9999999986 33322 23334478999999999988885
No 46
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=98.70 E-value=4.1e-06 Score=72.19 Aligned_cols=87 Identities=17% Similarity=0.225 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHcCCceeeeecchhHHHHHhh-hc-cCCCCCCCe-EEEEEEecCcceEEEEEeEeCCeEEEEEEeCCC
Q 036208 156 DSQRQATKDAGVISGLNVMRIINEPTAAAIAYG-LD-KKAGSTGEK-NVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDT 232 (279)
Q Consensus 156 ~~~r~~l~~a~~~ag~~~~~~i~e~~Aaa~~~~-~~-~~~~~~~~~-~vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~ 232 (279)
....+.+.++++.+|++...+..+|.|.+..+. .. ......... .++++|+|+++|++++++-+...+ ....
T Consensus 142 ~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~~-----~r~i 216 (348)
T TIGR01175 142 KEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRMLF-----TREV 216 (348)
T ss_pred HHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEEE-----EEEe
Confidence 456778899999999999888888888877663 11 111112334 499999999999999996444222 3347
Q ss_pred CCchhHHHHHHHHHH
Q 036208 233 HLGGEDFDNRMVNHF 247 (279)
Q Consensus 233 ~~Gg~~id~~l~~~l 247 (279)
++||.++++.+.+.+
T Consensus 217 ~~G~~~i~~~i~~~~ 231 (348)
T TIGR01175 217 PFGTRQLTSELSRAY 231 (348)
T ss_pred echHHHHHHHHHHHc
Confidence 899999999997654
No 47
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=98.69 E-value=9.9e-07 Score=77.43 Aligned_cols=126 Identities=10% Similarity=0.079 Sum_probs=89.6
Q ss_pred eEeHHHHHHHHHHHHHHHH-HHHhCCcccceEEeeCCCCCHHHHHHHHH-HHHHcCCceeeeecchhHHHHHhhhccCCC
Q 036208 117 QFSAEEISSMVLNKMKEIA-EAYLGTTIKNAVVTVPAYFNDSQRQATKD-AGVISGLNVMRIINEPTAAAIAYGLDKKAG 194 (279)
Q Consensus 117 ~~~~~~~~~~~l~~l~~~~-~~~~~~~~~~~~isvP~~~~~~~r~~l~~-a~~~ag~~~~~~i~e~~Aaa~~~~~~~~~~ 194 (279)
.+...+.+..+.+++...- ..........++++-|..+....|+.+.+ +.+...++...+..++.+++++.....
T Consensus 79 ~i~~W~~~e~~w~~~~~~~~~~~~~~~~~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~~--- 155 (444)
T COG5277 79 IILNWDAMEQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASGSSD--- 155 (444)
T ss_pred ccCCcHHHHHHHHHhhcchhhccCCCcCCceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCCCC---
Confidence 3555667888888887764 11122334589999999999999988755 577778888888877777777655322
Q ss_pred CCCCeEEEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCCchhHHHHHHHHHHHHHHH
Q 036208 195 STGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFK 252 (279)
Q Consensus 195 ~~~~~~vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~~~~ 252 (279)
.+.+|+|+|.+.|+++-+--+-. +........+||.+++..|.+.|.+.+.
T Consensus 156 ----~~g~ViD~G~~~t~v~PV~DG~~---l~~a~~ri~~gG~~it~~l~~lL~~~~~ 206 (444)
T COG5277 156 ----ETGLVIDSGDSVTHVIPVVDGIV---LPKAVKRIDIGGRDITDYLKKLLREKYP 206 (444)
T ss_pred ----CceEEEEcCCCceeeEeeecccc---ccccceeeecCcHHHHHHHHHHHhhccc
Confidence 57899999999999984432221 1111233689999999999999887553
No 48
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=98.56 E-value=7.4e-07 Score=75.61 Aligned_cols=73 Identities=18% Similarity=0.320 Sum_probs=49.6
Q ss_pred CceeeeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCCchhHHHHHHHHHHHH
Q 036208 171 LNVMRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQ 249 (279)
Q Consensus 171 ~~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~ 249 (279)
+..+.+++|+.+|.+.+...-. ....++|||+||+|+|+++++-.-.. .-...+..++|-..+...+.+.|..
T Consensus 140 I~~V~V~PQ~~~A~~~~~~~~~----~~~~~lVVDIGG~T~Dv~~v~~~~~~--~~~~~~~~~~Gvs~~~~~I~~~l~~ 212 (318)
T PF06406_consen 140 IKDVEVFPQSVGAVFDALMDLD----EDESVLVVDIGGRTTDVAVVRGGLPD--ISKCSGTPEIGVSDLYDAIAQALRS 212 (318)
T ss_dssp EEEEEEEESSHHHHHHHHHTS-----TTSEEEEEEE-SS-EEEEEEEGGG----EEEEEEETTSSTHHHHHHHHHHTT-
T ss_pred EeeEEEEcccHHHHHHHHHhhc----ccCcEEEEEcCCCeEEeeeecCCccc--cchhccCCchhHHHHHHHHHHHHHH
Confidence 4568999999999998876633 44679999999999999998621111 1122333578988888888877654
No 49
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=98.34 E-value=5.4e-06 Score=72.05 Aligned_cols=86 Identities=20% Similarity=0.251 Sum_probs=53.3
Q ss_pred ceEEeeCCCCCHHHHHHHHHHHHHcCCceeeee------cchhHHHHHhhhccCCCCCCCeEEEEEEecCcceEEEEEeE
Q 036208 145 NAVVTVPAYFNDSQRQATKDAGVISGLNVMRII------NEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVSLLTI 218 (279)
Q Consensus 145 ~~~isvP~~~~~~~r~~l~~a~~~ag~~~~~~i------~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd~sv~~~ 218 (279)
.+.||=-+.=.+..+..+...+..||= +++ .|+.-|+...+..... ......|+=+|||||||-+++|+.
T Consensus 87 AVIITGETArKeNA~~v~~~Ls~~aGD---FVVATAGPdLEsiiAgkGsGA~~~S-~~~~~~V~NiDIGGGTtN~avf~~ 162 (473)
T PF06277_consen 87 AVIITGETARKENAREVLHALSGFAGD---FVVATAGPDLESIIAGKGSGAAALS-KEHHTVVANIDIGGGTTNIAVFDN 162 (473)
T ss_pred cEEEecchhhhhhHHHHHHHHHHhcCC---EEEEccCCCHHHHHhccCccHHHHh-hhhCCeEEEEEeCCCceeEEEEEC
Confidence 456666666667778888888888872 222 2555554433221111 126788999999999999999986
Q ss_pred eCCeEEEEEEeCCCCCchhHH
Q 036208 219 EEGIFEVKATAGDTHLGGEDF 239 (279)
Q Consensus 219 ~~~~~~~~~~~~~~~~Gg~~i 239 (279)
++ ++.. .+.++||+.|
T Consensus 163 G~----v~~T-~cl~IGGRLi 178 (473)
T PF06277_consen 163 GE----VIDT-ACLDIGGRLI 178 (473)
T ss_pred CE----EEEE-EEEeeccEEE
Confidence 65 2222 2355665543
No 50
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=98.21 E-value=0.00018 Score=61.75 Aligned_cols=87 Identities=16% Similarity=0.244 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHcCCceeeeecchhHHHHHhhhc--cCCCCCCCeEEEEEEecCcceEEEEEeEeCCeEEEEEEeCCCC
Q 036208 156 DSQRQATKDAGVISGLNVMRIINEPTAAAIAYGLD--KKAGSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTH 233 (279)
Q Consensus 156 ~~~r~~l~~a~~~ag~~~~~~i~e~~Aaa~~~~~~--~~~~~~~~~~vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~ 233 (279)
....+.+.++++.+|++...+=-++.|.+..+... ..+.......++++|+|+.+|.+.++.-+...+ .....
T Consensus 135 k~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~~g~~~f-----~R~i~ 209 (340)
T PF11104_consen 135 KEIVESYVELFEEAGLKPVAVDVEAFALARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQNGKPIF-----SRSIP 209 (340)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEETTEEEE-----EEEES
T ss_pred HHHHHHHHHHHHHcCCceEEEeehHHHHHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEECCEEEE-----EEEEe
Confidence 34566778899999999765544566655444432 111123456899999999999999987433222 22369
Q ss_pred CchhHHHHHHHHHH
Q 036208 234 LGGEDFDNRMVNHF 247 (279)
Q Consensus 234 ~Gg~~id~~l~~~l 247 (279)
+||.++++.+.+.+
T Consensus 210 ~G~~~l~~~i~~~~ 223 (340)
T PF11104_consen 210 IGGNDLTEAIAREL 223 (340)
T ss_dssp -SHHHHHHHHHHHT
T ss_pred eCHHHHHHHHHHhc
Confidence 99999999999886
No 51
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=98.10 E-value=4.8e-05 Score=66.02 Aligned_cols=122 Identities=16% Similarity=0.155 Sum_probs=86.1
Q ss_pred eeEeHHHHHHHHHHHHHHHHHHHhCCcc-----cceEEeeCCCCCHHHHHHH-HHHHHHcCCceeeeecchhHHHHHhhh
Q 036208 116 KQFSAEEISSMVLNKMKEIAEAYLGTTI-----KNAVVTVPAYFNDSQRQAT-KDAGVISGLNVMRIINEPTAAAIAYGL 189 (279)
Q Consensus 116 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~-----~~~~isvP~~~~~~~r~~l-~~a~~~ag~~~~~~i~e~~Aaa~~~~~ 189 (279)
...+..++++++-+-+.......++-+. ..+++.||-.|.....+.| .-.+..+||....++-|+.|+.+..+.
T Consensus 195 ~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGl 274 (618)
T KOG0797|consen 195 PYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGL 274 (618)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCc
Confidence 3456666666544333333344444332 3689999999998775555 446788899999999999999998775
Q ss_pred ccCCCCCCCeEEEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCCchhHHHHHHHHHHHH
Q 036208 190 DKKAGSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQ 249 (279)
Q Consensus 190 ~~~~~~~~~~~vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~ 249 (279)
. ...|||||+-.|.++.++-+- ......-....||.+|+..|+-++++
T Consensus 275 s---------s~CVVdiGAQkTsIaCVEdGv---s~~ntri~L~YGGdDitr~f~~ll~r 322 (618)
T KOG0797|consen 275 S---------SACVVDIGAQKTSIACVEDGV---SLPNTRIILPYGGDDITRCFLWLLRR 322 (618)
T ss_pred c---------ceeEEEccCcceeEEEeecCc---cccCceEEeccCCchHHHHHHHHHHh
Confidence 4 459999999999999886432 11222334789999999998877654
No 52
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=98.08 E-value=0.00017 Score=61.62 Aligned_cols=114 Identities=12% Similarity=0.129 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcccceEEeeCCCCCHHHHHHHHHH-HHHcCCceeeeecchhHHHHHhhhccCCCCCCC
Q 036208 120 AEEISSMVLNKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQATKDA-GVISGLNVMRIINEPTAAAIAYGLDKKAGSTGE 198 (279)
Q Consensus 120 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~isvP~~~~~~~r~~l~~a-~~~ag~~~~~~i~e~~Aaa~~~~~~~~~~~~~~ 198 (279)
..+-+..+.+|+...-... ......+.++-|+.+....|+.|-+. .+..+.+.+.+ ...|.+ |.. ..
T Consensus 77 ~wd~me~iw~~if~~~L~~-~Pee~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yv--a~qavl--ya~-------g~ 144 (372)
T KOG0676|consen 77 DWDDMEKIWHHLFYSELLV-APEEHPVLLTEPPLNPKANREKLTQIMFETFNVPALYV--AIQAVL--YAS-------GR 144 (372)
T ss_pred chHHHHHHHHHHHHHhhcc-CcccCceEeecCCCCchHhHHHHHHHhhhhcCccHhHH--HHHHHH--HHc-------CC
Confidence 3344588888887322222 23336899999999999999999875 44555555444 223333 332 44
Q ss_pred eEEEEEEecCcceEEE-EEeEeCCeEEEEEEeCCCCCchhHHHHHHHHHHHH
Q 036208 199 KNVLIFDLGGGTFDVS-LLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQ 249 (279)
Q Consensus 199 ~~vlvvDiG~gttd~s-v~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~ 249 (279)
.+-+|||+|.|.|.+. +++--. +.+.-...++||.+++..+...|.+
T Consensus 145 ttG~VvD~G~gvt~~vPI~eG~~----lp~ai~~ldl~G~dlt~~l~~~L~~ 192 (372)
T KOG0676|consen 145 TTGLVVDSGDGVTHVVPIYEGYA----LPHAILRLDLAGRDLTDYLLKQLRK 192 (372)
T ss_pred eeEEEEEcCCCceeeeecccccc----cchhhheecccchhhHHHHHHHHHh
Confidence 5679999999988554 554222 2222345799999999977777765
No 53
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=98.05 E-value=7.7e-05 Score=65.23 Aligned_cols=130 Identities=9% Similarity=0.014 Sum_probs=85.9
Q ss_pred eeeEeHHHHHHHHHHHHHHHHHHHhCCcccceEEeeCCCCCHHHHHHHHHH-HHHcCCceeeeecchhHHHHHhhhccCC
Q 036208 115 EKQFSAEEISSMVLNKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQATKDA-GVISGLNVMRIINEPTAAAIAYGLDKKA 193 (279)
Q Consensus 115 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~isvP~~~~~~~r~~l~~a-~~~ag~~~~~~i~e~~Aaa~~~~~~~~~ 193 (279)
...++..+++..+|.|+.......-..-...+++|-+..-....|+.|.+. .+..|++.+.+ .+-+.+++.+...
T Consensus 88 ~nVvtNwel~E~ilDY~F~~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~y---GIDslfS~~hN~~- 163 (645)
T KOG0681|consen 88 RNVVTNWELMEQILDYIFGKLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAY---GIDSLFSFYHNYG- 163 (645)
T ss_pred CCccccHHHHHHHHHHHHHhcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceee---chhhHHHHhhccC-
Confidence 345788888999998888765332222234688888877777788888775 56678876543 2333344443332
Q ss_pred CCCCCeEEEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCCchhHHHHHHHHHHHHHHH
Q 036208 194 GSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFK 252 (279)
Q Consensus 194 ~~~~~~~vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~~~~ 252 (279)
.......++|++|..+|.|-.+--+.. ++....-.++||.+...-|.+++..+|+
T Consensus 164 -~~~~~~~liis~g~~~T~vipvldG~~---il~~~kRiN~GG~qa~dYL~~Lmq~Kyp 218 (645)
T KOG0681|consen 164 -KSSNKSGLIISMGHSATHVIPVLDGRL---ILKDVKRINWGGYQAGDYLSRLMQLKYP 218 (645)
T ss_pred -cccCcceEEEecCCCcceeEEEecCch---hhhcceeeccCcchHHHHHHHHHhccCc
Confidence 223347899999999999887654432 2333444899999998887777766543
No 54
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=97.85 E-value=0.00095 Score=63.28 Aligned_cols=137 Identities=14% Similarity=0.283 Sum_probs=87.2
Q ss_pred eeEeHHHHHHHHHHHHHHHHHHHhCC--------------cccceEEeeCCCCCHHHHHHHHHHHHHc--------CCc-
Q 036208 116 KQFSAEEISSMVLNKMKEIAEAYLGT--------------TIKNAVVTVPAYFNDSQRQATKDAGVIS--------GLN- 172 (279)
Q Consensus 116 ~~~~~~~~~~~~l~~l~~~~~~~~~~--------------~~~~~~isvP~~~~~~~r~~l~~a~~~a--------g~~- 172 (279)
..++..-++..+|..|+.+|..+.|. ....+++|+|+.....+|+.+++.++.| |..
T Consensus 415 p~ySRSSLMtfML~EiL~QAL~QINSpa~R~r~~~~~~PR~LR~IILT~P~AMPk~Er~ifr~r~~~Ai~LvWk~lGw~~ 494 (1002)
T PF07520_consen 415 PHYSRSSLMTFMLSEILAQALMQINSPAQRLRRGHSDAPRRLRRIILTLPPAMPKPEREIFRRRMEEAIGLVWKALGWHP 494 (1002)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCHHHHhhcccCCCChhhhheeEECCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 35678889999999999888777654 2337899999999999999998887766 321
Q ss_pred -------------------eee-eecchhHHHHHhhh-------------------ccCCC------CCCCeEEEEEEec
Q 036208 173 -------------------VMR-IINEPTAAAIAYGL-------------------DKKAG------STGEKNVLIFDLG 207 (279)
Q Consensus 173 -------------------~~~-~i~e~~Aaa~~~~~-------------------~~~~~------~~~~~~vlvvDiG 207 (279)
.+. --+|++|.-+-|++ ..... ..+.-+|.-||||
T Consensus 495 ~~~~~~~~~~~~~~~~~~P~v~~~WDEATC~QlVyLYnE~~~~fgG~~~~FF~~~~rp~~~~~~~~~~~~slriASIDIG 574 (1002)
T PF07520_consen 495 WDDDFDTNKDREKSWVPLPEVQMEWDEATCGQLVYLYNEIQVKFGGRAEEFFALMARPDRQPAPGEDPGPSLRIASIDIG 574 (1002)
T ss_pred CCCCcccccccccccCCCCceeEEeecceeeeeeehhHHHHHHcCCCHHHHHHHhcCCCccccccCCCCCceEEEEEecC
Confidence 000 11344443222222 11111 2334579999999
Q ss_pred CcceEEEEEeEe----CC-eEEEEEE---eCCCCCchhHHHHHHHH-HHHHHHH
Q 036208 208 GGTFDVSLLTIE----EG-IFEVKAT---AGDTHLGGEDFDNRMVN-HFVQEFK 252 (279)
Q Consensus 208 ~gttd~sv~~~~----~~-~~~~~~~---~~~~~~Gg~~id~~l~~-~l~~~~~ 252 (279)
|||||+.|-+.. .+ ...+.-. ..+-.+.|.+|-..+++ ++.-.+.
T Consensus 575 GGTTDL~It~Y~ld~G~g~nv~I~P~q~FReGFkvAGDDiLldVI~~~VlPal~ 628 (1002)
T PF07520_consen 575 GGTTDLMITQYRLDDGQGSNVKITPEQLFREGFKVAGDDILLDVIQRIVLPALQ 628 (1002)
T ss_pred CCcceeeEEEEEeccCCcceeEECcchhhhhhcccccHHHHHHHHHHHhHHHHH
Confidence 999999986665 32 2222222 12257889988877764 4444333
No 55
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=97.82 E-value=0.00085 Score=60.54 Aligned_cols=77 Identities=21% Similarity=0.248 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHcCCceeeeecchh-HHHHHhhhccCCCCCCCeEEEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCCch
Q 036208 158 QRQATKDAGVISGLNVMRIINEPT-AAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGG 236 (279)
Q Consensus 158 ~r~~l~~a~~~ag~~~~~~i~e~~-Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg 236 (279)
....+.++-+..|++. .+++..+ |-..+.+..... ......+++|+|||+|++++++-.. + .. ....++|.
T Consensus 93 ~~~fl~~i~~~tGl~i-evIsG~eEA~l~~~gv~~~l--~~~~~~lviDIGGGStEl~~~~~~~--~--~~-~~Sl~lG~ 164 (496)
T PRK11031 93 ADEFLAKAQEILGCPV-QVISGEEEARLIYQGVAHTT--GGADQRLVVDIGGASTELVTGTGAQ--A--TS-LFSLSMGC 164 (496)
T ss_pred HHHHHHHHHHHHCCCe-EEeCHHHHHHHHHHhhhhcc--CCCCCEEEEEecCCeeeEEEecCCc--e--ee-eeEEeccc
Confidence 3445566667779986 5555444 444444443332 2234689999999999999986332 1 11 22267777
Q ss_pred hHHHHH
Q 036208 237 EDFDNR 242 (279)
Q Consensus 237 ~~id~~ 242 (279)
..+.+.
T Consensus 165 vrl~e~ 170 (496)
T PRK11031 165 VTWLER 170 (496)
T ss_pred hHHHHH
Confidence 776544
No 56
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.67 E-value=0.011 Score=49.32 Aligned_cols=86 Identities=16% Similarity=0.260 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHcCCceeeeecchhHHHHHhhh--ccCCCCCCCeEEEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCC
Q 036208 157 SQRQATKDAGVISGLNVMRIINEPTAAAIAYGL--DKKAGSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHL 234 (279)
Q Consensus 157 ~~r~~l~~a~~~ag~~~~~~i~e~~Aaa~~~~~--~~~~~~~~~~~vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~ 234 (279)
+..+....+++.||++...+=-|..|.-.+|.. .+........+++++|||+..|.+.++.-+...+ ....++
T Consensus 149 E~v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk~ly-----~r~~~~ 223 (354)
T COG4972 149 EVVESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDGKILY-----TREVPV 223 (354)
T ss_pred hhhHHHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECCeeee-----EeeccC
Confidence 345566789999999986666677777655542 2221222334589999999999999997555333 345899
Q ss_pred chhHHHHHHHHHH
Q 036208 235 GGEDFDNRMVNHF 247 (279)
Q Consensus 235 Gg~~id~~l~~~l 247 (279)
||.++++.+.+..
T Consensus 224 g~~Qlt~~i~r~~ 236 (354)
T COG4972 224 GTDQLTQEIQRAY 236 (354)
T ss_pred cHHHHHHHHHHHh
Confidence 9999999997755
No 57
>PRK10854 exopolyphosphatase; Provisional
Probab=97.65 E-value=0.0013 Score=59.55 Aligned_cols=91 Identities=15% Similarity=0.227 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHhCCcccceEEeeCCCCCHH-HHHHHHHHHHHcCCceeeeecchhHHHHHh-hhccCCCCCCCeEE
Q 036208 124 SSMVLNKMKEIAEAYLGTTIKNAVVTVPAYFNDS-QRQATKDAGVISGLNVMRIINEPTAAAIAY-GLDKKAGSTGEKNV 201 (279)
Q Consensus 124 ~~~~l~~l~~~~~~~~~~~~~~~~isvP~~~~~~-~r~~l~~a~~~ag~~~~~~i~e~~Aaa~~~-~~~~~~~~~~~~~v 201 (279)
+-..|+...+.+..+ +... ..+++.-+-=... ....+.++-+..|++. .+++..+-|.+.| +..... ......
T Consensus 65 ~~~~L~~F~~~~~~~-~v~~-v~~vATsAlReA~N~~~fl~~i~~~tGl~i-~vIsG~EEA~l~~~gv~~~l--~~~~~~ 139 (513)
T PRK10854 65 GLNCLSLFAERLQGF-SPAN-VCIVGTHTLRQALNATDFLKRAEKVIPYPI-EIISGNEEARLIFMGVEHTQ--PEKGRK 139 (513)
T ss_pred HHHHHHHHHHHHHhC-CCCe-EEEEehHHHHcCcCHHHHHHHHHHHHCCCe-EEeCHHHHHHHHHhhhhccc--CCCCCe
Confidence 444555555555433 3221 2222222222222 3444556666779885 5666555444444 443332 123568
Q ss_pred EEEEecCcceEEEEEeEe
Q 036208 202 LIFDLGGGTFDVSLLTIE 219 (279)
Q Consensus 202 lvvDiG~gttd~sv~~~~ 219 (279)
+++|+|||+|++++++-.
T Consensus 140 lvvDIGGGStEl~~~~~~ 157 (513)
T PRK10854 140 LVIDIGGGSTELVIGENF 157 (513)
T ss_pred EEEEeCCCeEEEEEecCC
Confidence 999999999999998743
No 58
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=97.30 E-value=0.003 Score=52.17 Aligned_cols=190 Identities=14% Similarity=0.094 Sum_probs=104.5
Q ss_pred CCEEEEEcCCcceEEEEEeCCceEEEecCCCCcccceEEEEcCCce---eecHHHHhhhhhCcCcccccchhhcCCCCCC
Q 036208 7 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTER---LIGDAAKNQVAMNPTNTVFDAKRLIGRRFSD 83 (279)
Q Consensus 7 ~~vvGID~Gt~~t~v~~~~~~~~~~v~~~~~~~~~ps~i~~~~~~~---~~G~~a~~~~~~~~~~~~~~~k~~l~~~~~~ 83 (279)
...|-+|=|..+.+++...+..|.++ |+++...+.++ +.|++..+... +.. +
T Consensus 3 ~~tiVlDNGay~~KiG~s~~~~p~~v---------pNcl~kaK~~~rr~f~~nei~ec~D--~ss-------L------- 57 (400)
T KOG0680|consen 3 TTTIVLDNGAYNIKIGPSTNKKPFVV---------PNCLAKAKFGRRRSFLANEIDECKD--ISS-------L------- 57 (400)
T ss_pred CceEEEcCCceeEEeccCCCCCceec---------cchhhhcccccchhhhhhhhhhccC--ccc-------e-------
Confidence 35788999999999999988888787 55566554322 34444322210 000 0
Q ss_pred hhHhhccccCCceEEecCCCcceEEEEeCCceeeEeHHHHHHHHHHHHHHHHHHHhCCcccceEEeeCCCCCHHHHHHH-
Q 036208 84 PSVQSDMKLWPFKVIAGAGDKPMIVVNYKGEEKQFSAEEISSMVLNKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQAT- 162 (279)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~isvP~~~~~~~r~~l- 162 (279)
.+...+ +.-.+...+.-....+++.....-........+++|-|.+--+.-.+..
T Consensus 58 ----------------------~y~rp~--erGyLvnW~tq~~vWDy~f~~~~~~~~~~~~~ivlTep~~~~psi~~~t~ 113 (400)
T KOG0680|consen 58 ----------------------FYRRPH--ERGYLVNWDTQSQVWDYCFGNPGFDVEGKDHNIVLTEPCMTFPSIQEHTD 113 (400)
T ss_pred ----------------------EEeehh--hcceeEeehhHHHHHHHHhcCCCcCcccCcceEEEecccccccchhhhHH
Confidence 000000 1112333344455555554332211122345789999966555544444
Q ss_pred HHHHHHcCCceeeeecchhHHHHH-hhhccCC-CCCCCeEEEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCCchhHHH
Q 036208 163 KDAGVISGLNVMRIINEPTAAAIA-YGLDKKA-GSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFD 240 (279)
Q Consensus 163 ~~a~~~ag~~~~~~i~e~~Aaa~~-~~~~~~~-~~~~~~~vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg~~id 240 (279)
+-..+..+++.+.-..-+.-+|.. |...+++ .-+.+...+|||-|.+.|.+.-+-.+... ..+... .++||..++
T Consensus 114 eilFEey~fd~v~kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip~v~g~~~--~qaV~R-iDvGGK~LT 190 (400)
T KOG0680|consen 114 EILFEEYQFDAVLKTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIPVVKGIPY--YQAVKR-IDVGGKALT 190 (400)
T ss_pred HHHHHHhccceEeecCHHHhcchhhhccCCccccccccceEEEEeCCCceEEEehhhcCcch--hhceEE-eecchHHHH
Confidence 445777788765444322222332 2222221 12446689999999999988744332221 122223 789999999
Q ss_pred HHHHHHHH
Q 036208 241 NRMVNHFV 248 (279)
Q Consensus 241 ~~l~~~l~ 248 (279)
+.|.+++.
T Consensus 191 n~LKE~iS 198 (400)
T KOG0680|consen 191 NLLKETIS 198 (400)
T ss_pred HHHHHHhh
Confidence 99988774
No 59
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=97.28 E-value=0.0052 Score=51.84 Aligned_cols=109 Identities=18% Similarity=0.220 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHhCCcccceEEeeCCCCCHHHHHHH-HHHHHHcCCceeeeecchhHHHHHhhhccCCCCCCCeEEE
Q 036208 124 SSMVLNKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQAT-KDAGVISGLNVMRIINEPTAAAIAYGLDKKAGSTGEKNVL 202 (279)
Q Consensus 124 ~~~~l~~l~~~~~~~~~~~~~~~~isvP~~~~~~~r~~l-~~a~~~ag~~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~vl 202 (279)
+...|....+.+..+ +... ..+++.-+.=....+..+ ...-+..|++. .+++..+-+.+.|.--... ... ...+
T Consensus 54 ~~~~l~~f~~~~~~~-~v~~-i~~vaTsa~R~A~N~~~~~~~i~~~tgi~i-~visg~eEa~l~~~gv~~~-~~~-~~~~ 128 (300)
T TIGR03706 54 ALEALKRFAELLRGF-PVDE-VRAVATAALRDAKNGPEFLREAEAILGLPI-EVISGEEEARLIYLGVAHT-LPI-ADGL 128 (300)
T ss_pred HHHHHHHHHHHHHhC-CCCe-EEEEEcHHHHcCCCHHHHHHHHHHHHCCCe-EEeChHHHHHHHHHHHHhC-CCC-CCcE
Confidence 334444445555432 3321 223333333233344444 44455679875 6777666555555332211 111 2249
Q ss_pred EEEecCcceEEEEEeEeCCeEEEEEEeCCCCCchhHHHHH
Q 036208 203 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNR 242 (279)
Q Consensus 203 vvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg~~id~~ 242 (279)
++|+|||+|++++++-.. +.... ..++|...+.+.
T Consensus 129 v~DiGGGSte~~~~~~~~----~~~~~-Sl~lG~vrl~e~ 163 (300)
T TIGR03706 129 VVDIGGGSTELILGKDFE----PGEGV-SLPLGCVRLTEQ 163 (300)
T ss_pred EEEecCCeEEEEEecCCC----EeEEE-EEccceEEhHHh
Confidence 999999999999886332 11112 256666555554
No 60
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.21 E-value=0.01 Score=53.16 Aligned_cols=59 Identities=22% Similarity=0.261 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHcCCceeeeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcceEEEEEeE
Q 036208 158 QRQATKDAGVISGLNVMRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVSLLTI 218 (279)
Q Consensus 158 ~r~~l~~a~~~ag~~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd~sv~~~ 218 (279)
.-+.+..+-+..|++.-.+--|.+|-..+.+....- ......+|+|+|||+|++++..-
T Consensus 90 ~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~--~~~~~~lv~DIGGGStEl~~g~~ 148 (492)
T COG0248 90 GDEFLARVEKELGLPIEVISGEEEARLIYLGVASTL--PRKGDGLVIDIGGGSTELVLGDN 148 (492)
T ss_pred HHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcC--CCCCCEEEEEecCCeEEEEEecC
Confidence 345567777788988644445666666655555552 22788999999999999998863
No 61
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=97.10 E-value=0.012 Score=47.33 Aligned_cols=97 Identities=13% Similarity=0.153 Sum_probs=66.3
Q ss_pred CCcccceEEeeCCCCCHHHHHHHHH-HHHHcCCceeeeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcceEEE-EEe
Q 036208 140 GTTIKNAVVTVPAYFNDSQRQATKD-AGVISGLNVMRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVS-LLT 217 (279)
Q Consensus 140 ~~~~~~~~isvP~~~~~~~r~~l~~-a~~~ag~~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd~s-v~~ 217 (279)
..+...+-++-|+--....|+.|-+ ..+..||..+++. ..|+...|.. .-.+-+|||-|-|-|.+. +++
T Consensus 98 dp~~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyva--iQAVLtLYAQ-------GL~tGvVvDSGDGVTHi~PVye 168 (389)
T KOG0677|consen 98 DPTNCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVA--IQAVLTLYAQ-------GLLTGVVVDSGDGVTHIVPVYE 168 (389)
T ss_pred CCccCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEeh--HHHHHHHHHh-------cccceEEEecCCCeeEEeeeec
Confidence 3444578999999988888888755 6888899987765 3344333432 223458999999999887 333
Q ss_pred EeCCeEEEEEEeCCCCCchhHHHHHHHHHHHH
Q 036208 218 IEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQ 249 (279)
Q Consensus 218 ~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~ 249 (279)
--. +-+-....++.|++++.-|.+++..
T Consensus 169 ~~~----l~HLtrRldvAGRdiTryLi~LLl~ 196 (389)
T KOG0677|consen 169 GFV----LPHLTRRLDVAGRDITRYLIKLLLR 196 (389)
T ss_pred cee----hhhhhhhccccchhHHHHHHHHHHh
Confidence 111 1111234689999999999988864
No 62
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=97.01 E-value=0.034 Score=45.52 Aligned_cols=65 Identities=14% Similarity=0.162 Sum_probs=44.5
Q ss_pred eeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCCchhHHHHHHHHHH
Q 036208 175 RIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHF 247 (279)
Q Consensus 175 ~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l 247 (279)
..++|..|.+........ . .-.++|+||..+-+..++ ++.+.-..-...+..|+-.+.+.+.+.+
T Consensus 73 ~~~~ei~~~~~g~~~~~~----~--~~~vidiGgqd~k~i~~~--~g~~~~~~~n~~ca~Gtg~f~e~~a~~l 137 (248)
T TIGR00241 73 KIVTEISCHGKGANYLAP----E--ARGVIDIGGQDSKVIKID--DGKVDDFTMNDKCAAGTGRFLEVTARRL 137 (248)
T ss_pred CceEEhhHHHHHHHHHCC----C--CCEEEEecCCeeEEEEEC--CCcEeeeeecCcccccccHHHHHHHHHc
Confidence 467788877665544333 1 125999999999999988 4444444445557788888888887765
No 63
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=96.99 E-value=0.0039 Score=51.77 Aligned_cols=72 Identities=21% Similarity=0.219 Sum_probs=40.9
Q ss_pred ceEEeeCCCCCHHHHHHHHHHHHHcCCceeeee------cchhHHHHHhhhccCCCCCCCeEEEEEEecCcceEEEEEeE
Q 036208 145 NAVVTVPAYFNDSQRQATKDAGVISGLNVMRII------NEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVSLLTI 218 (279)
Q Consensus 145 ~~~isvP~~~~~~~r~~l~~a~~~ag~~~~~~i------~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd~sv~~~ 218 (279)
.+.++=-+.=+...|..+-..-..+|= .++ .|+.-|+-..+...- +.+....++=+|+|||||..++|..
T Consensus 89 AvIITGEtArk~NA~~vl~alSg~aGD---FVVAtAGPdLESiIAGkGaGA~t~-Seqr~t~v~NlDIGGGTtN~slFD~ 164 (473)
T COG4819 89 AVIITGETARKRNARPVLMALSGSAGD---FVVATAGPDLESIIAGKGAGAQTL-SEQRLTRVLNLDIGGGTTNYSLFDA 164 (473)
T ss_pred cEEEeccccccccchHHHHHhhhcccc---eEEEecCCCHHHHhccCCccccch-hhhhceEEEEEeccCCccceeeecc
Confidence 345555544444555555554444442 222 244444332222111 2346778999999999999999987
Q ss_pred eC
Q 036208 219 EE 220 (279)
Q Consensus 219 ~~ 220 (279)
++
T Consensus 165 Gk 166 (473)
T COG4819 165 GK 166 (473)
T ss_pred cc
Confidence 65
No 64
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=96.70 E-value=0.081 Score=48.27 Aligned_cols=53 Identities=11% Similarity=0.272 Sum_probs=40.1
Q ss_pred eEeHHHHHHHHHHHHHHHHHHHhCCc--------------ccceEEeeCCCCCHHHHHHHHHHHHHc
Q 036208 117 QFSAEEISSMVLNKMKEIAEAYLGTT--------------IKNAVVTVPAYFNDSQRQATKDAGVIS 169 (279)
Q Consensus 117 ~~~~~~~~~~~l~~l~~~~~~~~~~~--------------~~~~~isvP~~~~~~~r~~l~~a~~~a 169 (279)
.++..-++..+|..++.+|..+.+.. ...+++|+|+.....+|+.+++-+..|
T Consensus 423 ~ySRSslmTfML~EilaqAl~qiNsp~tR~kl~~~~aPR~LRsiILTlPsAmPk~EreIfr~r~~eA 489 (1014)
T COG4457 423 CYSRSSLMTFMLSEILAQALSQINSPATRLKLRHKDAPRQLRSIILTLPSAMPKQEREIFRQRMEEA 489 (1014)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhcCHHHhhhhccCCchHhhhhheeeCCccCCchHHHHHHHHHHHH
Confidence 35677788888888888776665532 236899999999999998887766655
No 65
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=96.44 E-value=0.011 Score=49.45 Aligned_cols=75 Identities=23% Similarity=0.344 Sum_probs=43.6
Q ss_pred HHHHHHHHcCCceeeeecchh-HHHHHhhhccCCCCCCCeEEEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCCchhHH
Q 036208 161 ATKDAGVISGLNVMRIINEPT-AAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDF 239 (279)
Q Consensus 161 ~l~~a~~~ag~~~~~~i~e~~-Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg~~i 239 (279)
.+..+-...|++. .+++..+ |...+......- ......+++|+|||+|++++++-.. +.... ..++|...+
T Consensus 76 ~~~~i~~~tGi~i-~iIsgeeEa~l~~~gv~~~l--~~~~~~lviDIGGGStEl~~~~~~~----~~~~~-Sl~lG~vrl 147 (285)
T PF02541_consen 76 FLDRIKKETGIDI-EIISGEEEARLSFLGVLSSL--PPDKNGLVIDIGGGSTELILFENGK----VVFSQ-SLPLGAVRL 147 (285)
T ss_dssp HHHHHHHHHSS-E-EEE-HHHHHHHHHHHHHHHS--TTTSSEEEEEEESSEEEEEEEETTE----EEEEE-EES--HHHH
T ss_pred HHHHHHHHhCCce-EEecHHHHHHHHHHHHHhhc--cccCCEEEEEECCCceEEEEEECCe----eeEee-eeehHHHHH
Confidence 3555566679886 5555444 443333332221 2556789999999999999986422 12222 278998888
Q ss_pred HHHH
Q 036208 240 DNRM 243 (279)
Q Consensus 240 d~~l 243 (279)
.+.+
T Consensus 148 ~e~~ 151 (285)
T PF02541_consen 148 TERF 151 (285)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7665
No 66
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=96.20 E-value=0.085 Score=42.53 Aligned_cols=74 Identities=16% Similarity=0.192 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhCCcccceEEeeCCCCCHH-HHHHHHHHHHHcCCceeeeecchhHHHHHhhhccCCCCCCCeEEEEEEe
Q 036208 128 LNKMKEIAEAYLGTTIKNAVVTVPAYFNDS-QRQATKDAGVISGLNVMRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDL 206 (279)
Q Consensus 128 l~~l~~~~~~~~~~~~~~~~isvP~~~~~~-~r~~l~~a~~~ag~~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDi 206 (279)
++++++.++..++.++ .++++-..+... ..+..++.+.. + ..|.|-.... ...+..++||+
T Consensus 76 Ve~Ii~~v~~Af~~pv--~~v~~~G~~~ssEa~~~~~~vAAa-N---------W~Ata~~~~e------~~~dsci~VD~ 137 (330)
T COG1548 76 VEDIIDTVEKAFNCPV--YVVDVNGNFLSSEALKNPREVAAA-N---------WVATARFLAE------EIKDSCILVDM 137 (330)
T ss_pred HHHHHHHHHHhcCCce--EEEeccCcCcChhHhcCHHHHHHh-h---------hHHHHHHHHH------hcCCceEEEec
Confidence 5667777777777764 777777777653 22223332210 0 1222222221 24567899999
Q ss_pred cCcceEEEEEeEe
Q 036208 207 GGGTFDVSLLTIE 219 (279)
Q Consensus 207 G~gttd~sv~~~~ 219 (279)
|+.|||+.-+.-+
T Consensus 138 GSTTtDIIPi~~g 150 (330)
T COG1548 138 GSTTTDIIPIKDG 150 (330)
T ss_pred CCcccceEeecch
Confidence 9999999866554
No 67
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=95.89 E-value=0.052 Score=44.31 Aligned_cols=74 Identities=19% Similarity=0.142 Sum_probs=48.9
Q ss_pred HHHHHHcCCceeeeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCCchhHHHHH
Q 036208 163 KDAGVISGLNVMRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNR 242 (279)
Q Consensus 163 ~~a~~~ag~~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg~~id~~ 242 (279)
.+.-+..|.+...-=.|+++|....+.... .+...+++|+|+|+||.+++.-.. .+..++-. -.|+.++..
T Consensus 102 ~~l~~~lgv~V~igGvEAemAi~GALTTPG----t~~PlaIlDmG~GSTDAsii~~~g-~v~~iHlA----GAG~mVTml 172 (332)
T PF08841_consen 102 DELEEELGVPVEIGGVEAEMAILGALTTPG----TDKPLAILDMGGGSTDASIINRDG-EVTAIHLA----GAGNMVTML 172 (332)
T ss_dssp HHHHHHHTSEEEEECEHHHHHHHHHTTSTT------SSEEEEEE-SSEEEEEEE-TTS--EEEEEEE-----SHHHHHHH
T ss_pred HHHHHHHCCceEEccccHHHHHhcccCCCC----CCCCeEEEecCCCcccHHHhCCCC-cEEEEEec----CCchhhHHH
Confidence 344556688776666799999998887665 667899999999999999997655 33333332 346777766
Q ss_pred HHH
Q 036208 243 MVN 245 (279)
Q Consensus 243 l~~ 245 (279)
+..
T Consensus 173 I~s 175 (332)
T PF08841_consen 173 INS 175 (332)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 68
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=95.71 E-value=0.054 Score=42.28 Aligned_cols=30 Identities=37% Similarity=0.300 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHcCCceeeeecchhHHHHH
Q 036208 157 SQRQATKDAGVISGLNVMRIINEPTAAAIA 186 (279)
Q Consensus 157 ~~r~~l~~a~~~ag~~~~~~i~e~~Aaa~~ 186 (279)
...+.+.++++.+|++...++.+|.|++.+
T Consensus 157 ~~v~n~~~~v~~agl~v~~i~~~~~A~~~a 186 (187)
T smart00842 157 SAIQNLEKCVERAGLEVDGIVLEPLASAEA 186 (187)
T ss_pred HHHHHHHHHHHHcCCchhhEEehhhhhEec
Confidence 357788999999999999999999998753
No 69
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=95.10 E-value=0.87 Score=38.24 Aligned_cols=121 Identities=16% Similarity=0.169 Sum_probs=68.4
Q ss_pred eHHHHHHHHHHHHHHHHHHHhC--CcccceEEeeCCCCCHHHHHHHHHHHHHcCCceeeeecchhHH----HHHhhhccC
Q 036208 119 SAEEISSMVLNKMKEIAEAYLG--TTIKNAVVTVPAYFNDSQRQATKDAGVISGLNVMRIINEPTAA----AIAYGLDKK 192 (279)
Q Consensus 119 ~~~~~~~~~l~~l~~~~~~~~~--~~~~~~~isvP~~~~~~~r~~l~~a~~~ag~~~~~~i~e~~Aa----a~~~~~~~~ 192 (279)
...+++..|.+..+- .++. .+....-+|.|.--.++.|+-..++.-.. +++..+. -+++| +..|...+-
T Consensus 83 e~wd~mer~~~q~if---kylr~ePedh~fLlteppln~penreytaeImfEs-fnvpgly-iAVqavLALaaswts~~v 157 (415)
T KOG0678|consen 83 EDWDLMERFWEQCIF---KYLRAEPEDHYFLLTEPPLNQPENREYTAEIMFES-FNVPGLY-IAVQAVLALAASWTSRQV 157 (415)
T ss_pred ccHHHHHHHHhhhhh---hhhcCCcccceEEecCCCCCCchhhHHHHHhhhhh-ccCchHH-HHHHHHHHHHHHHHHhhh
Confidence 345555555543332 2222 33446788999888889988877764332 2222221 12222 222222221
Q ss_pred CCCCCCeEEEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCCchhHHHHHHHHHHHH
Q 036208 193 AGSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQ 249 (279)
Q Consensus 193 ~~~~~~~~vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~ 249 (279)
....-+-+|+|-|-|-|.+-.+. .+ +.+.+.-...++.|++++.-+..++++
T Consensus 158 --~er~ltG~VidsGdgvThvipva--Eg-yVigScik~iPiagrdiT~fiQ~llRe 209 (415)
T KOG0678|consen 158 --GERFLTGIVIDSGDGVTHVIPVA--EG-YVIGSCIKHIPIAGRDITYFIQQLLRE 209 (415)
T ss_pred --hhheeeeEEEecCCCeeEEEEee--cc-eEEeeeeccccccCCchhHHHHHHhhC
Confidence 12244677999999998877653 22 223343455899999999877666643
No 70
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=95.05 E-value=1 Score=39.40 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=19.3
Q ss_pred CCCCCCEEEEEcCCcceEEEEE
Q 036208 3 GKGEGPAIGIDLGTTYSCVGVW 24 (279)
Q Consensus 3 ~~~~~~vvGID~Gt~~t~v~~~ 24 (279)
+.++..++.||||.|+.++|..
T Consensus 71 g~e~g~~LaiD~GGTnlRvc~V 92 (466)
T COG5026 71 GNESGSVLAIDLGGTNLRVCLV 92 (466)
T ss_pred CCCCCCEEEEecCCceEEEEEE
Confidence 3567889999999999999986
No 71
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=94.61 E-value=0.59 Score=37.97 Aligned_cols=106 Identities=15% Similarity=0.224 Sum_probs=66.2
Q ss_pred CCcccceEE--eeCCCCCHHHHHHHHHHHHHcCCceeeeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcceEEEEEe
Q 036208 140 GTTIKNAVV--TVPAYFNDSQRQATKDAGVISGLNVMRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVSLLT 217 (279)
Q Consensus 140 ~~~~~~~~i--svP~~~~~~~r~~l~~a~~~ag~~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd~sv~~ 217 (279)
+..+..+++ .+|.+|+ --+++++.+...+.+. .+.+...||.+..+.... ......+++||+|=|+|-.+++
T Consensus 111 g~~~~~~~y~~~~P~~~T--Rm~av~~~~~~~~~~~-~vmDTg~AAvlGal~d~~--v~~~~~~~~vniGN~HTlaa~v- 184 (254)
T PF08735_consen 111 GGRPESFVYADDPPPYFT--RMRAVRESLGGAGYDE-VVMDTGPAAVLGALCDPE--VSSREGIIVVNIGNGHTLAALV- 184 (254)
T ss_pred CCCHHHeeecCCCcHHHH--HHHHHHHHhccCCCCc-eEecCHHHHHhhhhcChh--hhccCCeEEEEeCCccEEEEEE-
Confidence 344456666 6776644 1223445555555554 667777777766666554 2457789999999999999988
Q ss_pred EeCCeEEEEEEeCCCCCchhHHHHHHHHHHHHHHH
Q 036208 218 IEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFK 252 (279)
Q Consensus 218 ~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~~~~ 252 (279)
.++++.=+.++.+..+....+...|.++....|.
T Consensus 185 -~~~rI~GvfEHHT~~l~~~kL~~~l~~l~~G~Lt 218 (254)
T PF08735_consen 185 -KDGRIYGVFEHHTGMLTPEKLEEYLERLRDGTLT 218 (254)
T ss_pred -eCCEEEEEEecccCCCCHHHHHHHHHHHHcCCCC
Confidence 3444444444444667777766666665554444
No 72
>PLN02405 hexokinase
Probab=94.16 E-value=0.5 Score=42.64 Aligned_cols=34 Identities=15% Similarity=0.072 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHcCCc--eeeeecchhHHHHHhhhcc
Q 036208 158 QRQATKDAGVISGLN--VMRIINEPTAAAIAYGLDK 191 (279)
Q Consensus 158 ~r~~l~~a~~~ag~~--~~~~i~e~~Aaa~~~~~~~ 191 (279)
-.+.|++|+.+-|++ .+.++++.++..++..+..
T Consensus 207 Vv~lL~~Al~r~~l~v~v~AlvNDTVGTL~a~aY~~ 242 (497)
T PLN02405 207 VVGELTKAMERVGLDMRVSALVNDTIGTLAGGRYYN 242 (497)
T ss_pred HHHHHHHHHHHcCCCceEEEEEecCHHHHHHhhcCC
Confidence 377888898888874 5788999999887766543
No 73
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=93.70 E-value=0.1 Score=37.49 Aligned_cols=49 Identities=10% Similarity=0.217 Sum_probs=28.7
Q ss_pred EEEEEecCcceEEEEEeEeCC-eEEEEEEeCCCC--CchhHHH--HHHHHHHHH
Q 036208 201 VLIFDLGGGTFDVSLLTIEEG-IFEVKATAGDTH--LGGEDFD--NRMVNHFVQ 249 (279)
Q Consensus 201 vlvvDiG~gttd~sv~~~~~~-~~~~~~~~~~~~--~Gg~~id--~~l~~~l~~ 249 (279)
++++|+|++++.+.+++.... .++++....... +=+.+|+ +.+.+-+..
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~ 54 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGYIRVLGVGEVPSKGIKGGHITDIEDISKAIKI 54 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEEEEEES----------HHHHH--HHHHHHHT-
T ss_pred CEEEEcCCCcEEEEEEEeCCCCcEEEEEEecccccccCCCEEEEHHHHHHHHHH
Confidence 689999999999999987443 333332221111 1188888 777766544
No 74
>PLN02914 hexokinase
Probab=93.55 E-value=0.63 Score=41.89 Aligned_cols=54 Identities=17% Similarity=0.126 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHcCC--ceeeeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcceEEEEEe
Q 036208 158 QRQATKDAGVISGL--NVMRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVSLLT 217 (279)
Q Consensus 158 ~r~~l~~a~~~ag~--~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd~sv~~ 217 (279)
-.+.|++|+++-|+ ..+.++++.++..++..+... .+.+-+=+|-||--+++-+
T Consensus 207 Vv~lL~~Al~r~~l~v~v~AivNDTVGTL~a~aY~~~------~~~iGlIlGTGtNacY~E~ 262 (490)
T PLN02914 207 VVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWDD------DVMVAVILGTGTNACYVER 262 (490)
T ss_pred HHHHHHHHHHHcCCCceEEEEEEcCHHHHHhhhcCCC------CceEEEEEECCeeeEEEee
Confidence 47788888887776 457889999998877665433 2333333455555554443
No 75
>PLN02362 hexokinase
Probab=93.29 E-value=0.7 Score=41.85 Aligned_cols=33 Identities=15% Similarity=0.123 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHcCC--ceeeeecchhHHHHHhhhc
Q 036208 158 QRQATKDAGVISGL--NVMRIINEPTAAAIAYGLD 190 (279)
Q Consensus 158 ~r~~l~~a~~~ag~--~~~~~i~e~~Aaa~~~~~~ 190 (279)
-.+.|++++.+-|+ +.+.++++.++..++..+.
T Consensus 207 Vv~lL~~Al~r~~l~v~v~AlvNDTVgTL~a~aY~ 241 (509)
T PLN02362 207 VAECLQGALNRRGLDMRVAALVNDTVGTLALGHYH 241 (509)
T ss_pred HHHHHHHHHHHcCCCcEEEEEEEcCHHHHHhhhcC
Confidence 47788888888886 4578889999987775554
No 76
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=93.24 E-value=0.13 Score=40.84 Aligned_cols=31 Identities=26% Similarity=0.287 Sum_probs=23.4
Q ss_pred HHHHHHHHHHcCCc---eeeeecchhHHHHHhhh
Q 036208 159 RQATKDAGVISGLN---VMRIINEPTAAAIAYGL 189 (279)
Q Consensus 159 r~~l~~a~~~ag~~---~~~~i~e~~Aaa~~~~~ 189 (279)
.+.|++++.+.|+. .+.++++++|..++..+
T Consensus 171 ~~lL~~al~r~~~~~v~v~aivNDTVgTLla~~Y 204 (206)
T PF00349_consen 171 VELLQDALKRRGLPNVKVVAIVNDTVGTLLAGAY 204 (206)
T ss_dssp HHHHHHHHHHHTSSEEEEEEEE-HHHHHHHHHHT
T ss_pred chhHHHHHHHhcccCcceEEEEECCHHHhhhhhc
Confidence 67788898888876 46788899998877654
No 77
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=92.90 E-value=0.12 Score=43.30 Aligned_cols=40 Identities=33% Similarity=0.574 Sum_probs=25.1
Q ss_pred eeeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcceEEEEEe
Q 036208 174 MRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVSLLT 217 (279)
Q Consensus 174 ~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd~sv~~ 217 (279)
..+.+-|.|.+....... .....++++|+||.|||++++.
T Consensus 56 ~ti~SGPaas~~ga~~~~----~g~~~~i~vDmGGTTtDi~~i~ 95 (290)
T PF01968_consen 56 ETILSGPAASVIGAAARL----TGLENAIVVDMGGTTTDIALIK 95 (290)
T ss_dssp CTB--SSHHHHHHHHH------HT-SSEEEEEE-SS-EEEEEEE
T ss_pred HHhhcCHHHhHhhhhhhc----CCCCCEEEEeCCCCEEEEEEEE
Confidence 456666776666555512 2556899999999999999886
No 78
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=92.36 E-value=1.7 Score=35.46 Aligned_cols=74 Identities=15% Similarity=0.222 Sum_probs=54.7
Q ss_pred eeeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCCchhHHHHHHHHHHHHHHHh
Q 036208 174 MRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKR 253 (279)
Q Consensus 174 ~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~~~~~ 253 (279)
..+++.-.|++...+.... ....+|||+|-|+|..+++.-. ++.-+..+.+..+.-..+...|.++...+|..
T Consensus 207 av~mDskfaav~gal~dpa-----a~palvVd~GngHttaalvded--RI~gv~EHHT~~Lspekled~I~rf~~GeL~n 279 (342)
T COG4012 207 AVAMDSKFAAVMGALVDPA-----ADPALVVDYGNGHTTAALVDED--RIVGVYEHHTIRLSPEKLEDQIIRFVEGELEN 279 (342)
T ss_pred EEEEcchhHhhhhcccCcc-----cCceEEEEccCCceEEEEecCC--eEEEEeecccccCCHHHHHHHHHHHHhccccc
Confidence 5666666777766665443 3389999999999999988644 55555555558888889988888888877765
Q ss_pred h
Q 036208 254 K 254 (279)
Q Consensus 254 ~ 254 (279)
.
T Consensus 280 e 280 (342)
T COG4012 280 E 280 (342)
T ss_pred c
Confidence 3
No 79
>PLN02596 hexokinase-like
Probab=91.81 E-value=1.6 Score=39.39 Aligned_cols=55 Identities=18% Similarity=0.140 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHcCC--ceeeeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcceEEEEEeE
Q 036208 158 QRQATKDAGVISGL--NVMRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVSLLTI 218 (279)
Q Consensus 158 ~r~~l~~a~~~ag~--~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd~sv~~~ 218 (279)
-.+.|++++.+.|+ +.+-++++.++..++..+... .+.+-+=+|-||--+++-+.
T Consensus 207 vv~lL~~Al~r~~l~v~v~AivNDTVgTL~a~aY~~~------~~~iG~I~GTGtNacY~E~~ 263 (490)
T PLN02596 207 LVNDINRALEKHGLKIRVFALVDDTIGNLAGGRYYNK------DTVAAVTLGMGTNAAYVEPA 263 (490)
T ss_pred HHHHHHHHHHhcCCCceEEEEEEcCHHHHHhhhcCCC------CeEEEEEEecccceEEEEEc
Confidence 35667888877776 458899999999887766533 23333336666666665544
No 80
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=91.65 E-value=1.3 Score=39.45 Aligned_cols=57 Identities=14% Similarity=0.187 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHcCCc---eeeeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcceEEEEEeEeC
Q 036208 158 QRQATKDAGVISGLN---VMRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVSLLTIEE 220 (279)
Q Consensus 158 ~r~~l~~a~~~ag~~---~~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd~sv~~~~~ 220 (279)
-.+.|+++++.-|+. .+.++++.++......+.. +.+++-|=+|.||--+.+.+...
T Consensus 193 vv~~L~eal~rr~~~~i~V~AlvNDTvGtl~~~~y~~------~~~~igvI~GTGtNacY~e~~~~ 252 (474)
T KOG1369|consen 193 VVRLLREAIKRRGLFDMDVVAVVNDTVGTLMTCAYED------PNCEIGVIFGTGTNACYMEDMRN 252 (474)
T ss_pred HHHHHHHHHHHcCCcceEEEEEEecCHHhHhhceecC------CCcEEEEEECCCccceeeeeccc
Confidence 477889999999886 4677788888777655433 36677777888888887776654
No 81
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=91.39 E-value=0.96 Score=27.87 Aligned_cols=37 Identities=16% Similarity=0.237 Sum_probs=30.2
Q ss_pred HHHHhCCcccceEEeeCCCCCHHHHHHHHHHHHHcCCce
Q 036208 135 AEAYLGTTIKNAVVTVPAYFNDSQRQATKDAGVISGLNV 173 (279)
Q Consensus 135 ~~~~~~~~~~~~~isvP~~~~~~~r~~l~~a~~~ag~~~ 173 (279)
..++.... ...++.|+.+++.+|..+.++|...|+..
T Consensus 8 i~~F~~~~--~~~l~Fpp~ls~~eR~~vH~~a~~~gL~s 44 (59)
T cd06007 8 LEDFRASD--NEEYEFPSSLTNHERAVIHRLCRKLGLKS 44 (59)
T ss_pred HHHHHcCc--ccEEEcCCCCCHHHHHHHHHHHHHcCCCc
Confidence 33444443 78899999999999999999999999864
No 82
>PTZ00107 hexokinase; Provisional
Probab=90.62 E-value=4.9 Score=36.15 Aligned_cols=34 Identities=21% Similarity=0.278 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHcCC--ceeeeecchhHHHHHhhhcc
Q 036208 158 QRQATKDAGVISGL--NVMRIINEPTAAAIAYGLDK 191 (279)
Q Consensus 158 ~r~~l~~a~~~ag~--~~~~~i~e~~Aaa~~~~~~~ 191 (279)
-.+.|++|+.+-|+ ..+.++++++|..++..+..
T Consensus 196 V~~lL~~Al~r~~l~v~v~AivNDTVgTL~a~ay~~ 231 (464)
T PTZ00107 196 VGELLNDAFKRNNVPANVVAVLNDTVGTLISCAYQK 231 (464)
T ss_pred HHHHHHHHHHHcCCCceEEEEEEcCHHHHHHHHhcC
Confidence 36678888888776 45889999999988776655
No 83
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=90.21 E-value=1.3 Score=27.42 Aligned_cols=41 Identities=15% Similarity=0.235 Sum_probs=32.5
Q ss_pred HHHHHHHhCCcccceEEeeCCCCCHHHHHHHHHHHHHcCCce
Q 036208 132 KEIAEAYLGTTIKNAVVTVPAYFNDSQRQATKDAGVISGLNV 173 (279)
Q Consensus 132 ~~~~~~~~~~~~~~~~isvP~~~~~~~r~~l~~a~~~ag~~~ 173 (279)
.+.+.++.... ....++.|+.+++.+|..+.++|...|+..
T Consensus 5 ~~~i~~F~~s~-~~~~l~f~p~lt~~eR~~vH~~a~~~gL~s 45 (60)
T cd02640 5 RQIIQNYAHSD-DIRDMVFSPEFSKEERALIHQIAQKYGLKS 45 (60)
T ss_pred HHHHHHHHcCC-ccceEEcCCCCCHHHHHHHHHHHHHcCCce
Confidence 34444554443 478899999999999999999999999965
No 84
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=90.07 E-value=0.31 Score=39.73 Aligned_cols=20 Identities=35% Similarity=0.496 Sum_probs=17.3
Q ss_pred CEEEEEcCCcceEEEEEeCC
Q 036208 8 PAIGIDLGTTYSCVGVWQHD 27 (279)
Q Consensus 8 ~vvGID~Gt~~t~v~~~~~~ 27 (279)
.++|||+||+++++++++.+
T Consensus 1 y~lgiDiGTts~K~~l~d~~ 20 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDED 20 (245)
T ss_dssp EEEEEEECSSEEEEEEEETT
T ss_pred CEEEEEEcccceEEEEEeCC
Confidence 37999999999999998644
No 85
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=89.57 E-value=0.41 Score=32.76 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=16.2
Q ss_pred CEEEEEcCCcceEEEEEe
Q 036208 8 PAIGIDLGTTYSCVGVWQ 25 (279)
Q Consensus 8 ~vvGID~Gt~~t~v~~~~ 25 (279)
.++|||+|.+++++++.+
T Consensus 2 ~ilgiD~Ggt~i~~a~~d 19 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVD 19 (99)
T ss_pred cEEEEccCCCeEEEEEEC
Confidence 389999999999999984
No 86
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=88.68 E-value=0.92 Score=32.50 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=17.9
Q ss_pred EEEEEcCCcceEEEEEeCCceE
Q 036208 9 AIGIDLGTTYSCVGVWQHDRVE 30 (279)
Q Consensus 9 vvGID~Gt~~t~v~~~~~~~~~ 30 (279)
|++||+|++.+.+++++.+...
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~ 22 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDG 22 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEE
T ss_pred CEEEEcCCCcEEEEEEEeCCCC
Confidence 6899999999999999776543
No 87
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=88.41 E-value=0.64 Score=42.32 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=19.6
Q ss_pred CCCEEEEEcCCcceEEEEEeCC
Q 036208 6 EGPAIGIDLGTTYSCVGVWQHD 27 (279)
Q Consensus 6 ~~~vvGID~Gt~~t~v~~~~~~ 27 (279)
...++|||+|||++++.+++.+
T Consensus 3 ~~~~lgIDiGTt~~Kavl~d~~ 24 (502)
T COG1070 3 MKYVLGIDIGTTSVKAVLFDED 24 (502)
T ss_pred ccEEEEEEcCCCcEEEEEEeCC
Confidence 5689999999999999999655
No 88
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=87.96 E-value=2.5 Score=33.51 Aligned_cols=55 Identities=16% Similarity=0.325 Sum_probs=35.4
Q ss_pred CCCeEEEEEEecCcceEEEEEeEeCC-eEEEEEEeCCCC----CchhHHHHHHHHHHHHHHHh
Q 036208 196 TGEKNVLIFDLGGGTFDVSLLTIEEG-IFEVKATAGDTH----LGGEDFDNRMVNHFVQEFKR 253 (279)
Q Consensus 196 ~~~~~vlvvDiG~gttd~sv~~~~~~-~~~~~~~~~~~~----~Gg~~id~~l~~~l~~~~~~ 253 (279)
...+.+|.+|+||.++-++++++.+. .++.....+..+ -| .. +.|.+||.+.+.+
T Consensus 60 ~E~G~~LalDlGGTnlRv~~V~L~g~~~~~~~~~~~~ip~~~~~~-~~--~~lFd~ia~~i~~ 119 (206)
T PF00349_consen 60 NEKGDFLALDLGGTNLRVALVELSGNGKVEIEQEKYKIPEELMNG-SG--EELFDFIADCIAE 119 (206)
T ss_dssp TTEEEEEEEEESSSSEEEEEEEEESSSEEEEEEEEEE--HHHHTS-BH--HHHHHHHHHHHHH
T ss_pred CCCceEEEEeecCcEEEEEEEEEcCCCCceeeeccccCChHHhcC-Cc--ccHHHHHHHHHHH
Confidence 46778999999999999999999986 344333322121 11 11 5566666665554
No 89
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=87.91 E-value=0.62 Score=34.20 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=18.6
Q ss_pred CEEEEEcCCcceEEEEEeCCc
Q 036208 8 PAIGIDLGTTYSCVGVWQHDR 28 (279)
Q Consensus 8 ~vvGID~Gt~~t~v~~~~~~~ 28 (279)
.++|||+|+..+.+|+.++..
T Consensus 2 riL~lD~G~kriGiAvsd~~~ 22 (135)
T PF03652_consen 2 RILGLDYGTKRIGIAVSDPLG 22 (135)
T ss_dssp EEEEEEECSSEEEEEEEETTT
T ss_pred eEEEEEeCCCeEEEEEecCCC
Confidence 589999999999999987664
No 90
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=87.60 E-value=2.9 Score=25.83 Aligned_cols=41 Identities=17% Similarity=0.298 Sum_probs=31.6
Q ss_pred HHHHHHHhCCcccceEEeeCCCCCHHHHHHHHHHHHHcCCce
Q 036208 132 KEIAEAYLGTTIKNAVVTVPAYFNDSQRQATKDAGVISGLNV 173 (279)
Q Consensus 132 ~~~~~~~~~~~~~~~~isvP~~~~~~~r~~l~~a~~~ag~~~ 173 (279)
.+....+.... ....+..|+.++..+|..+.++|+..|+..
T Consensus 5 ~~~i~~F~~~~-~~~~l~F~p~ls~~eR~~vH~lA~~~gL~s 45 (60)
T cd02641 5 KAMVKAFMKDP-KATELEFPPTLSSHDRLLVHELAEELGLRH 45 (60)
T ss_pred HHHHHHHHcCC-CcCcEECCCCCCHHHHHHHHHHHHHcCCce
Confidence 34444444443 347899999999999999999999999864
No 91
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=87.08 E-value=0.65 Score=38.76 Aligned_cols=21 Identities=24% Similarity=0.155 Sum_probs=18.6
Q ss_pred CCEEEEEcCCcceEEEEEeCC
Q 036208 7 GPAIGIDLGTTYSCVGVWQHD 27 (279)
Q Consensus 7 ~~vvGID~Gt~~t~v~~~~~~ 27 (279)
+..+|||+|++++++++.+++
T Consensus 32 m~~~GIDiGStt~K~Vlld~~ 52 (293)
T TIGR03192 32 IITCGIDVGSVSSQAVLVCDG 52 (293)
T ss_pred cEEEEEEeCchhEEEEEEeCC
Confidence 478999999999999998755
No 92
>PRK10331 L-fuculokinase; Provisional
Probab=86.83 E-value=0.61 Score=42.05 Aligned_cols=20 Identities=15% Similarity=0.061 Sum_probs=17.6
Q ss_pred CEEEEEcCCcceEEEEEeCC
Q 036208 8 PAIGIDLGTTYSCVGVWQHD 27 (279)
Q Consensus 8 ~vvGID~Gt~~t~v~~~~~~ 27 (279)
.++|||+||+++++++++.+
T Consensus 3 ~~lgID~GTt~~Ka~l~d~~ 22 (470)
T PRK10331 3 VILVLDCGATNVRAIAVDRQ 22 (470)
T ss_pred eEEEEecCCCceEEEEEcCC
Confidence 68999999999999998533
No 93
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=86.10 E-value=1.1 Score=33.07 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=18.6
Q ss_pred CCCEEEEEcCCcceEEEEEeCC
Q 036208 6 EGPAIGIDLGTTYSCVGVWQHD 27 (279)
Q Consensus 6 ~~~vvGID~Gt~~t~v~~~~~~ 27 (279)
+..++|||+|+..+.+|+.+..
T Consensus 3 ~~~iLalD~G~kriGvAv~d~~ 24 (138)
T PRK00109 3 SGRILGLDVGTKRIGVAVSDPL 24 (138)
T ss_pred CCcEEEEEeCCCEEEEEEecCC
Confidence 4469999999999999997554
No 94
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=86.05 E-value=0.68 Score=42.38 Aligned_cols=21 Identities=14% Similarity=0.196 Sum_probs=18.3
Q ss_pred CCEEEEEcCCcceEEEEEeCC
Q 036208 7 GPAIGIDLGTTYSCVGVWQHD 27 (279)
Q Consensus 7 ~~vvGID~Gt~~t~v~~~~~~ 27 (279)
..++|||+||+++++++++.+
T Consensus 3 ~~~lgID~GTts~Ka~l~d~~ 23 (520)
T PRK10939 3 SYLMALDAGTGSIRAVIFDLN 23 (520)
T ss_pred cEEEEEecCCCceEEEEECCC
Confidence 379999999999999999544
No 95
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=85.89 E-value=2.4 Score=26.18 Aligned_cols=31 Identities=16% Similarity=0.183 Sum_probs=27.6
Q ss_pred ccceEEeeCCCCCHHHHHHHHHHHHHcCCce
Q 036208 143 IKNAVVTVPAYFNDSQRQATKDAGVISGLNV 173 (279)
Q Consensus 143 ~~~~~isvP~~~~~~~r~~l~~a~~~ag~~~ 173 (279)
...-.++.|+.+++.+|+.+...|...|+..
T Consensus 15 ~~~~eL~Fp~~ls~~eRriih~la~~lGL~~ 45 (60)
T cd02639 15 RMRDELAFPSSLSPAERRIVHLLASRLGLNH 45 (60)
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHHHcCCce
Confidence 3467888899999999999999999999865
No 96
>PRK00047 glpK glycerol kinase; Provisional
Probab=85.87 E-value=0.87 Score=41.40 Aligned_cols=20 Identities=30% Similarity=0.386 Sum_probs=17.7
Q ss_pred CCEEEEEcCCcceEEEEEeC
Q 036208 7 GPAIGIDLGTTYSCVGVWQH 26 (279)
Q Consensus 7 ~~vvGID~Gt~~t~v~~~~~ 26 (279)
..++|||+||+++++++++.
T Consensus 5 ~~~lgiD~GTts~Ka~l~d~ 24 (498)
T PRK00047 5 KYILALDQGTTSSRAIIFDH 24 (498)
T ss_pred CEEEEEecCCCceEEEEECC
Confidence 47999999999999999843
No 97
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=85.67 E-value=0.84 Score=41.60 Aligned_cols=20 Identities=25% Similarity=0.205 Sum_probs=17.8
Q ss_pred CEEEEEcCCcceEEEEEeCC
Q 036208 8 PAIGIDLGTTYSCVGVWQHD 27 (279)
Q Consensus 8 ~vvGID~Gt~~t~v~~~~~~ 27 (279)
.++|||+|||++++++++.+
T Consensus 3 ~~lgiDiGTts~Ka~l~d~~ 22 (504)
T PTZ00294 3 YIGSIDQGTTSTRFIIFDEK 22 (504)
T ss_pred EEEEEecCCCceEEEEECCC
Confidence 79999999999999999543
No 98
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=85.62 E-value=1.3 Score=41.64 Aligned_cols=39 Identities=28% Similarity=0.543 Sum_probs=26.3
Q ss_pred eeecchhHHHHHhhhc-cCCCCCCCeEEEEEEecCcceEEEEEe
Q 036208 175 RIINEPTAAAIAYGLD-KKAGSTGEKNVLIFDLGGGTFDVSLLT 217 (279)
Q Consensus 175 ~~i~e~~Aaa~~~~~~-~~~~~~~~~~vlvvDiG~gttd~sv~~ 217 (279)
.+.+-|.|..+...+- .. ..+ .++++|+||.|||++++.
T Consensus 257 tI~SGPAagvvGAa~ltg~---~~g-~~i~~DmGGTStDva~i~ 296 (674)
T COG0145 257 TILSGPAAGVVGAAYLTGL---KAG-NAIVFDMGGTSTDVALII 296 (674)
T ss_pred eEeeccHHHHHHHHHhccc---ccC-CEEEEEcCCcceeeeeee
Confidence 3555666665544433 21 122 699999999999999887
No 99
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=85.51 E-value=0.82 Score=39.88 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=20.0
Q ss_pred CCCCCEEEEEcCCcceEEEEEeCC
Q 036208 4 KGEGPAIGIDLGTTYSCVGVWQHD 27 (279)
Q Consensus 4 ~~~~~vvGID~Gt~~t~v~~~~~~ 27 (279)
++...++|||.|++.|++++.+++
T Consensus 141 ~~~g~~lGIDiGSTttK~Vl~dd~ 164 (404)
T TIGR03286 141 RQEGLTLGIDSGSTTTKAVVMEDN 164 (404)
T ss_pred ccCCEEEEEEcChhheeeEEEcCC
Confidence 345579999999999999998754
No 100
>PRK15027 xylulokinase; Provisional
Probab=84.91 E-value=0.86 Score=41.27 Aligned_cols=20 Identities=40% Similarity=0.393 Sum_probs=17.2
Q ss_pred CEEEEEcCCcceEEEEEeCC
Q 036208 8 PAIGIDLGTTYSCVGVWQHD 27 (279)
Q Consensus 8 ~vvGID~Gt~~t~v~~~~~~ 27 (279)
.++|||+||+++++++++..
T Consensus 1 ~~lgID~GTts~Ka~l~d~~ 20 (484)
T PRK15027 1 MYIGIDLGTSGVKVILLNEQ 20 (484)
T ss_pred CEEEEEecccceEEEEEcCC
Confidence 37999999999999998543
No 101
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=84.88 E-value=3.5 Score=25.22 Aligned_cols=41 Identities=17% Similarity=0.299 Sum_probs=31.2
Q ss_pred HHHHHHHHHhCCcccceEEeeCCCCCHHHHHHHHHHHHHcCCce
Q 036208 130 KMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQATKDAGVISGLNV 173 (279)
Q Consensus 130 ~l~~~~~~~~~~~~~~~~isvP~~~~~~~r~~l~~a~~~ag~~~ 173 (279)
.+.+..+.++... .-.++.|+ ++..+|..+.+.|...|+..
T Consensus 3 ~i~~~i~~F~~~~--~~~~~fpp-m~~~~R~~vH~lA~~~~L~S 43 (58)
T cd02646 3 DIKDEIEAFLLDS--RDSLSFPP-MDKHGRKTIHKLANCYNLKS 43 (58)
T ss_pred HHHHHHHHHHhCC--CceEecCC-CCHHHHHHHHHHHHHcCCcc
Confidence 3445555555544 56779998 89999999999999999864
No 102
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=84.69 E-value=0.92 Score=39.45 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=19.3
Q ss_pred CCEEEEEcCCcceEEEEEeCCc
Q 036208 7 GPAIGIDLGTTYSCVGVWQHDR 28 (279)
Q Consensus 7 ~~vvGID~Gt~~t~v~~~~~~~ 28 (279)
.+++|||+|++.|++++.+++.
T Consensus 2 ~y~lGIDIGSTsTKaVVmd~~g 23 (432)
T TIGR02259 2 ECFVGIDLGSTTTKAVLMDDKG 23 (432)
T ss_pred ceEEEEEcCchhEEEEEEcCCC
Confidence 3799999999999999997664
No 103
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=84.64 E-value=0.94 Score=40.81 Aligned_cols=20 Identities=15% Similarity=0.052 Sum_probs=17.4
Q ss_pred CEEEEEcCCcceEEEEEeCC
Q 036208 8 PAIGIDLGTTYSCVGVWQHD 27 (279)
Q Consensus 8 ~vvGID~Gt~~t~v~~~~~~ 27 (279)
.++|||+||+++++++.+.+
T Consensus 2 ~ilgiD~GTss~K~~l~d~~ 21 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINRQ 21 (465)
T ss_pred eEEEEecCCCcEEEEEEcCC
Confidence 58999999999999999543
No 104
>PRK13317 pantothenate kinase; Provisional
Probab=84.47 E-value=1.7 Score=36.26 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=18.0
Q ss_pred CEEEEEcCCcceEEEEEeCCc
Q 036208 8 PAIGIDLGTTYSCVGVWQHDR 28 (279)
Q Consensus 8 ~vvGID~Gt~~t~v~~~~~~~ 28 (279)
..||||+|+|.+++++.+++.
T Consensus 3 ~~iGIDiGstt~K~v~~~~~~ 23 (277)
T PRK13317 3 MKIGIDAGGTLTKIVYLEEKK 23 (277)
T ss_pred ceEEEEeCcccEEEEEEcCCC
Confidence 689999999999999985543
No 105
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=84.27 E-value=1.8 Score=32.62 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=19.6
Q ss_pred CEEEEEcCCcceEEEEEe--CCceEEEe
Q 036208 8 PAIGIDLGTTYSCVGVWQ--HDRVEIIA 33 (279)
Q Consensus 8 ~vvGID~Gt~~t~v~~~~--~~~~~~v~ 33 (279)
.|+|||.|++++..++.+ ++.+.++.
T Consensus 1 rILGIDPGl~~~G~av~~~~~~~~~~~~ 28 (154)
T cd00529 1 RILGIDPGSRNTGYGVIEQEGRKLIYLA 28 (154)
T ss_pred CEEEEccCcCceEEEEEEeeCCeEEEEE
Confidence 389999999999999973 44444443
No 106
>PRK04123 ribulokinase; Provisional
Probab=83.82 E-value=1.2 Score=40.99 Aligned_cols=19 Identities=26% Similarity=0.307 Sum_probs=17.6
Q ss_pred CCEEEEEcCCcceEEEEEe
Q 036208 7 GPAIGIDLGTTYSCVGVWQ 25 (279)
Q Consensus 7 ~~vvGID~Gt~~t~v~~~~ 25 (279)
..++|||+||+++++++++
T Consensus 3 ~~~lgiD~GTts~Ka~l~d 21 (548)
T PRK04123 3 AYVIGLDFGTDSVRALLVD 21 (548)
T ss_pred cEEEEEecCCCceEEEEEE
Confidence 4799999999999999997
No 107
>PLN02295 glycerol kinase
Probab=83.52 E-value=1.1 Score=40.86 Aligned_cols=19 Identities=26% Similarity=0.225 Sum_probs=16.8
Q ss_pred CEEEEEcCCcceEEEEEeC
Q 036208 8 PAIGIDLGTTYSCVGVWQH 26 (279)
Q Consensus 8 ~vvGID~Gt~~t~v~~~~~ 26 (279)
.++|||+||+++++++++.
T Consensus 1 ~vlgID~GTts~Ka~l~d~ 19 (512)
T PLN02295 1 FVGAIDQGTTSTRFIIYDR 19 (512)
T ss_pred CEEEEecCCCceEEEEECC
Confidence 4899999999999999953
No 108
>PRK13331 pantothenate kinase; Reviewed
Probab=83.21 E-value=2.1 Score=35.05 Aligned_cols=28 Identities=11% Similarity=0.139 Sum_probs=23.1
Q ss_pred CCCCCCCCEEEEEcCCcceEEEEEeCCc
Q 036208 1 MAGKGEGPAIGIDLGTTYSCVGVWQHDR 28 (279)
Q Consensus 1 m~~~~~~~vvGID~Gt~~t~v~~~~~~~ 28 (279)
|....+..++.||+|.|++++++++++.
T Consensus 1 ~~~~~~~~~L~iDiGNT~~~~g~f~~~~ 28 (251)
T PRK13331 1 MMFHTSNEWLALMIGNSRLHWGYFSGET 28 (251)
T ss_pred CCCCCCCcEEEEEeCCCcEEEEEEECCE
Confidence 4455667799999999999999998654
No 109
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=82.48 E-value=0.98 Score=38.30 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=18.0
Q ss_pred eEEEEEEecCcceEEEEEeEe
Q 036208 199 KNVLIFDLGGGTFDVSLLTIE 219 (279)
Q Consensus 199 ~~vlvvDiG~gttd~sv~~~~ 219 (279)
..++++||||.|||++++.-+
T Consensus 128 ~~~I~~DmGGTTtDi~~i~~G 148 (318)
T TIGR03123 128 PECLFVDMGSTTTDIIPIIDG 148 (318)
T ss_pred CCEEEEEcCccceeeEEecCC
Confidence 459999999999999988643
No 110
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=82.14 E-value=1.5 Score=40.28 Aligned_cols=18 Identities=33% Similarity=0.333 Sum_probs=17.0
Q ss_pred CEEEEEcCCcceEEEEEe
Q 036208 8 PAIGIDLGTTYSCVGVWQ 25 (279)
Q Consensus 8 ~vvGID~Gt~~t~v~~~~ 25 (279)
.++|||+||+.+++++++
T Consensus 2 ~~lgiD~GTss~Ka~l~d 19 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVD 19 (536)
T ss_pred eEEEEecCCCceEEEEEE
Confidence 589999999999999998
No 111
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=81.63 E-value=1.8 Score=31.91 Aligned_cols=22 Identities=23% Similarity=0.134 Sum_probs=18.4
Q ss_pred CCEEEEEcCCcceEEEEEeCCc
Q 036208 7 GPAIGIDLGTTYSCVGVWQHDR 28 (279)
Q Consensus 7 ~~vvGID~Gt~~t~v~~~~~~~ 28 (279)
..++|+|||+..+.+|+.+...
T Consensus 2 ~~ilalD~G~KrIGvA~sd~~~ 23 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDILG 23 (141)
T ss_pred ceEEEEecCCceEEEEEecCCC
Confidence 4699999999999999975553
No 112
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=81.61 E-value=1.5 Score=39.75 Aligned_cols=20 Identities=40% Similarity=0.418 Sum_probs=17.4
Q ss_pred CEEEEEcCCcceEEEEEeCC
Q 036208 8 PAIGIDLGTTYSCVGVWQHD 27 (279)
Q Consensus 8 ~vvGID~Gt~~t~v~~~~~~ 27 (279)
.++|||+|||++++++++.+
T Consensus 2 ~~lgiDiGtt~iKa~l~d~~ 21 (493)
T TIGR01311 2 YILAIDQGTTSSRAIVFDKD 21 (493)
T ss_pred eEEEEecCCCceEEEEECCC
Confidence 58999999999999998533
No 113
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=81.58 E-value=1.5 Score=39.88 Aligned_cols=20 Identities=30% Similarity=0.539 Sum_probs=17.1
Q ss_pred CEEEEEcCCcceEEEEEeCC
Q 036208 8 PAIGIDLGTTYSCVGVWQHD 27 (279)
Q Consensus 8 ~vvGID~Gt~~t~v~~~~~~ 27 (279)
.++|||+|||++++++.+.+
T Consensus 1 ~~lgiDiGtt~~K~~l~d~~ 20 (505)
T TIGR01314 1 YMIGVDIGTTSTKAVLFEEN 20 (505)
T ss_pred CEEEEeccccceEEEEEcCC
Confidence 47999999999999998443
No 114
>PLN02669 xylulokinase
Probab=81.10 E-value=1.7 Score=40.23 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=18.8
Q ss_pred CCCEEEEEcCCcceEEEEEeCC
Q 036208 6 EGPAIGIDLGTTYSCVGVWQHD 27 (279)
Q Consensus 6 ~~~vvGID~Gt~~t~v~~~~~~ 27 (279)
...+||||+||+.+++++++.+
T Consensus 7 ~~~~LGiD~GT~s~Ka~l~d~~ 28 (556)
T PLN02669 7 DSLFLGFDSSTQSLKATVLDSN 28 (556)
T ss_pred CCeEEEEecccCCeEEEEEcCC
Confidence 4579999999999999998544
No 115
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=80.93 E-value=2.5 Score=34.80 Aligned_cols=19 Identities=26% Similarity=0.323 Sum_probs=17.0
Q ss_pred CEEEEEcCCcceEEEEEeC
Q 036208 8 PAIGIDLGTTYSCVGVWQH 26 (279)
Q Consensus 8 ~vvGID~Gt~~t~v~~~~~ 26 (279)
.++|||+|++.+++++.++
T Consensus 2 ~~~GIDiGStttK~Vlid~ 20 (262)
T TIGR02261 2 ITAGIDIGTGAIKTVLFEV 20 (262)
T ss_pred eEEEEEcCcccEEEEEEec
Confidence 4799999999999999873
No 116
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=80.00 E-value=1.9 Score=39.76 Aligned_cols=19 Identities=26% Similarity=0.407 Sum_probs=16.7
Q ss_pred EEEEEcCCcceEEEEEeCC
Q 036208 9 AIGIDLGTTYSCVGVWQHD 27 (279)
Q Consensus 9 vvGID~Gt~~t~v~~~~~~ 27 (279)
++|||+|||++++++++.+
T Consensus 2 ~lgID~GTts~Ka~l~d~~ 20 (541)
T TIGR01315 2 YIGVDVGTGSARACIIDST 20 (541)
T ss_pred EEEEEecCcCEEEEEEcCC
Confidence 7999999999999999433
No 117
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=78.07 E-value=3.1 Score=35.85 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=21.3
Q ss_pred CCCCEEEEEcCCcceEEEEEeCCc
Q 036208 5 GEGPAIGIDLGTTYSCVGVWQHDR 28 (279)
Q Consensus 5 ~~~~vvGID~Gt~~t~v~~~~~~~ 28 (279)
....++|||.|+|.|++++.+++.
T Consensus 133 ~~~~~LGID~GSTtTK~VLm~d~~ 156 (396)
T COG1924 133 QGMYTLGIDSGSTTTKAVLMEDGK 156 (396)
T ss_pred cCcEEEEEecCCcceeEEEEeCCC
Confidence 456899999999999999998886
No 118
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=77.46 E-value=5 Score=30.01 Aligned_cols=25 Identities=24% Similarity=0.427 Sum_probs=17.8
Q ss_pred EEEEEcCCcceEEEEE--eCCceEEEe
Q 036208 9 AIGIDLGTTYSCVGVW--QHDRVEIIA 33 (279)
Q Consensus 9 vvGID~Gt~~t~v~~~--~~~~~~~v~ 33 (279)
|+|||-|++++..++. .++.+..+.
T Consensus 1 ILGIDPgl~~tG~avi~~~~~~~~~i~ 27 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEEDGGKLRLID 27 (149)
T ss_dssp EEEEE--SSEEEEEEEEEETTEEEEEE
T ss_pred CEEECCCCCCeeEEEEEeeCCEEEEEE
Confidence 7999999999999998 445555554
No 119
>PF13941 MutL: MutL protein
Probab=77.06 E-value=3.5 Score=36.84 Aligned_cols=41 Identities=32% Similarity=0.429 Sum_probs=28.7
Q ss_pred eeeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcceEEEEEe
Q 036208 174 MRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVSLLT 217 (279)
Q Consensus 174 ~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd~sv~~ 217 (279)
..+++-|.|+....-.-.+. ..+.+++||+||-|||+--+-
T Consensus 226 ~~i~PTP~AVl~~~~lla~~---~~g~llvVDIGGATTDVhSv~ 266 (457)
T PF13941_consen 226 GPIMPTPAAVLRAAELLAEG---GIGDLLVVDIGGATTDVHSVA 266 (457)
T ss_pred CcccCCHHHHHHHHHHHHhc---ccCCEEEEEccCcccchhhhc
Confidence 46677777776554433331 667899999999999996443
No 120
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=75.36 E-value=49 Score=27.91 Aligned_cols=39 Identities=31% Similarity=0.387 Sum_probs=26.1
Q ss_pred cCCceeeeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcc
Q 036208 169 SGLNVMRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGT 210 (279)
Q Consensus 169 ag~~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gt 210 (279)
.+++ +.+-.+..|+|++-.+.... .....++++-+|-|-
T Consensus 106 ~~~P-v~veNDan~aalaE~~~g~~--~~~~~~~~i~~gtGI 144 (314)
T COG1940 106 LGLP-VFVENDANAAALAEAWFGAG--RGIDDVVYITLGTGI 144 (314)
T ss_pred HCCC-EEEecHHHHHHHHHHHhCCC--CCCCCEEEEEEccce
Confidence 3544 67888888999887765542 345567777777664
No 121
>PRK09698 D-allose kinase; Provisional
Probab=74.65 E-value=50 Score=27.68 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=18.1
Q ss_pred CCCEEEEEcCCcceEEEEEeC
Q 036208 6 EGPAIGIDLGTTYSCVGVWQH 26 (279)
Q Consensus 6 ~~~vvGID~Gt~~t~v~~~~~ 26 (279)
...++|||+|.+++++++.+.
T Consensus 3 ~~~~lgidig~t~i~~~l~d~ 23 (302)
T PRK09698 3 KNVVLGIDMGGTHIRFCLVDA 23 (302)
T ss_pred ccEEEEEEcCCcEEEEEEEcC
Confidence 567999999999999998753
No 122
>PRK09557 fructokinase; Reviewed
Probab=74.33 E-value=51 Score=27.64 Aligned_cols=39 Identities=21% Similarity=0.412 Sum_probs=25.4
Q ss_pred cCCceeeeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcc
Q 036208 169 SGLNVMRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGT 210 (279)
Q Consensus 169 ag~~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gt 210 (279)
.+++ +.+..+..|+|++-..... ......++++.+|.|-
T Consensus 96 ~~~p-v~~~NDa~aaA~aE~~~g~--~~~~~~~~~l~igtGi 134 (301)
T PRK09557 96 LNRE-VRLANDANCLAVSEAVDGA--AAGKQTVFAVIIGTGC 134 (301)
T ss_pred HCCC-EEEccchhHHHHHHHHhcc--cCCCCcEEEEEEccce
Confidence 3664 6788888988887655432 1244667777787443
No 123
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=74.28 E-value=36 Score=29.04 Aligned_cols=128 Identities=15% Similarity=0.185 Sum_probs=69.8
Q ss_pred eHHHHHHHHHHHHHHHHHHHhCCcccceEEeeCCCCCHHHH--------HHHHHHHHHcCCceeeeecchhHHHHHhhhc
Q 036208 119 SAEEISSMVLNKMKEIAEAYLGTTIKNAVVTVPAYFNDSQR--------QATKDAGVISGLNVMRIINEPTAAAIAYGLD 190 (279)
Q Consensus 119 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~isvP~~~~~~~r--------~~l~~a~~~ag~~~~~~i~e~~Aaa~~~~~~ 190 (279)
+.++++..|+..+... ...+...||+|+.--..... -.-.+..+..|+..+.++++=+|.|+....-
T Consensus 37 s~~~~l~~~l~~~~~~-----~~~p~~~~iavAGPV~~~~~~lTN~~W~i~~~~l~~~lg~~~v~liNDfeA~a~gl~~L 111 (316)
T PF02685_consen 37 SFEDALADYLAELDAG-----GPEPDSACIAVAGPVRDGKVRLTNLPWTIDADELAQRLGIPRVRLINDFEAQAYGLPAL 111 (316)
T ss_dssp HHHHHHHHHHHHTCHH-----HTCEEEEEEEESS-EETTCEE-SSSCCEEEHHHCHCCCT-TCEEEEEHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcccC-----CCccceEEEEEecCccCCEEEecCCCccccHHHHHHHhCCceEEEEcccchheeccCCC
Confidence 3566777777655111 22344577777631111100 0012333456888999999888887766442
Q ss_pred cCC--------CCCCCeEEEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCCch-hHHHHHHHHHHHHHH
Q 036208 191 KKA--------GSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGG-EDFDNRMVNHFVQEF 251 (279)
Q Consensus 191 ~~~--------~~~~~~~vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg-~~id~~l~~~l~~~~ 251 (279)
... ........+|+-.|-|-=...++....+..-+-++.+...+.- .+.+..|.+++.+++
T Consensus 112 ~~~~l~~l~~g~~~~~~~~~Vig~GTGLG~a~l~~~~~~~~v~~sEgGH~~fap~~~~e~~l~~~l~~~~ 181 (316)
T PF02685_consen 112 DPEDLVTLQPGEPDPGGPRAVIGPGTGLGVALLVPDGDGYYVLPSEGGHVDFAPRTDEEAELLRFLRRRY 181 (316)
T ss_dssp HHCCECCHCCEESSTTS-EEEEEESSSEEEEEEEEETTEEEEEEE-GGGSB---SSHHHHHHHHHHHHHC
T ss_pred CHHHeeeccCCCCCCCCcEEEEEcCCCcEEEEEEecCCceEeCCCccccccCCCCCHHHHHHHHHHHHhc
Confidence 221 1335667889988877655556665444443333445555553 567778888888777
No 124
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=73.37 E-value=4.2 Score=36.23 Aligned_cols=42 Identities=24% Similarity=0.336 Sum_probs=26.2
Q ss_pred eeeecchhHHHHHhhhccCC--CCCCCeEEEEEEecCcceEEEE
Q 036208 174 MRIINEPTAAAIAYGLDKKA--GSTGEKNVLIFDLGGGTFDVSL 215 (279)
Q Consensus 174 ~~~i~e~~Aaa~~~~~~~~~--~~~~~~~vlvvDiG~gttd~sv 215 (279)
..+++-|.|+....-.-.+. ....-+.+++||+||-|||+--
T Consensus 222 ~~i~PTP~AV~~a~~~la~~~~~~~g~g~ll~VDIGGATTDvhS 265 (463)
T TIGR01319 222 EELMPTPAAVFEAAKAIAEGTDKDDGIGDFILIDIGGATTDVHS 265 (463)
T ss_pred CcccCCHHHHHHHHHHHHhccccccCcCCEEEEEcCccccchhh
Confidence 45666677775544332221 1122346999999999999853
No 125
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=72.45 E-value=4.8 Score=36.42 Aligned_cols=20 Identities=40% Similarity=0.537 Sum_probs=18.2
Q ss_pred CCCEEEEEcCCcceEEEEEe
Q 036208 6 EGPAIGIDLGTTYSCVGVWQ 25 (279)
Q Consensus 6 ~~~vvGID~Gt~~t~v~~~~ 25 (279)
...++|||.||+.+++++++
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~ 24 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFN 24 (516)
T ss_pred cceEEEEEcCCCceEEEEEe
Confidence 57899999999999999984
No 126
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=72.29 E-value=6.2 Score=30.04 Aligned_cols=19 Identities=32% Similarity=0.391 Sum_probs=16.9
Q ss_pred CCEEEEEcCCcceEEEEEe
Q 036208 7 GPAIGIDLGTTYSCVGVWQ 25 (279)
Q Consensus 7 ~~vvGID~Gt~~t~v~~~~ 25 (279)
+.|+|||-|++++..++.+
T Consensus 2 m~iLGIDPgl~~tG~avi~ 20 (164)
T PRK00039 2 MRILGIDPGLRRTGYGVIE 20 (164)
T ss_pred CEEEEEccccCceeEEEEE
Confidence 3699999999999999874
No 127
>PRK13321 pantothenate kinase; Reviewed
Probab=72.10 E-value=4.8 Score=33.09 Aligned_cols=19 Identities=37% Similarity=0.543 Sum_probs=17.3
Q ss_pred EEEEEcCCcceEEEEEeCC
Q 036208 9 AIGIDLGTTYSCVGVWQHD 27 (279)
Q Consensus 9 vvGID~Gt~~t~v~~~~~~ 27 (279)
+++||+|.|++++++++++
T Consensus 2 iL~IDIGnT~ik~gl~~~~ 20 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGD 20 (256)
T ss_pred EEEEEECCCeEEEEEEECC
Confidence 6999999999999999865
No 128
>PRK13318 pantothenate kinase; Reviewed
Probab=71.71 E-value=5 Score=33.03 Aligned_cols=20 Identities=25% Similarity=0.634 Sum_probs=17.6
Q ss_pred EEEEEcCCcceEEEEEeCCc
Q 036208 9 AIGIDLGTTYSCVGVWQHDR 28 (279)
Q Consensus 9 vvGID~Gt~~t~v~~~~~~~ 28 (279)
+++||+|.|++++++.+++.
T Consensus 2 iL~IDIGnT~iK~al~d~g~ 21 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEGGK 21 (258)
T ss_pred EEEEEECCCcEEEEEEECCE
Confidence 78999999999999988543
No 129
>PRK00124 hypothetical protein; Validated
Probab=71.28 E-value=36 Score=25.51 Aligned_cols=90 Identities=11% Similarity=0.117 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHcCCceeeeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcceEEEEEeEeC-----------------
Q 036208 158 QRQATKDAGVISGLNVMRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVSLLTIEE----------------- 220 (279)
Q Consensus 158 ~r~~l~~a~~~ag~~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd~sv~~~~~----------------- 220 (279)
-+..+.++++..|++.+.+.+ |-.....+....-..++||-|....|..+++...
T Consensus 12 Vk~~i~r~a~r~~i~v~~Vas--------~n~~~~~~~~~~v~~v~V~~g~D~AD~~Iv~~~~~gDiVIT~Di~LAa~~l 83 (151)
T PRK00124 12 VKDIIIRVAERHGIPVTLVAS--------FNHFLRVPYSPFIRTVYVDAGFDAADNEIVQLAEKGDIVITQDYGLAALAL 83 (151)
T ss_pred HHHHHHHHHHHHCCeEEEEEe--------CCcccCCCCCCceEEEEeCCCCChHHHHHHHhCCCCCEEEeCCHHHHHHHH
Confidence 567778888888888654442 1111111111234678899999988887665543
Q ss_pred -CeEEEEEEeCCCCCchhHHHHHHH-HHHHHHHHhhhC
Q 036208 221 -GIFEVKATAGDTHLGGEDFDNRMV-NHFVQEFKRKNK 256 (279)
Q Consensus 221 -~~~~~~~~~~~~~~Gg~~id~~l~-~~l~~~~~~~~~ 256 (279)
.....+...+ ..+--.+|+..|. +++.+++.+..+
T Consensus 84 ~Kga~vl~prG-~~yt~~nI~~~L~~R~~~~~lR~~G~ 120 (151)
T PRK00124 84 EKGAIVLNPRG-YIYTNDNIDQLLAMRDLMATLRRSGI 120 (151)
T ss_pred HCCCEEECCCC-cCCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 1334555554 7888999999996 899999988553
No 130
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=70.11 E-value=32 Score=29.02 Aligned_cols=58 Identities=19% Similarity=0.234 Sum_probs=41.2
Q ss_pred CCeEEEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCCchhHHHHHHHHHHHHHHHhh
Q 036208 197 GEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRK 254 (279)
Q Consensus 197 ~~~~vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~~~~~~ 254 (279)
....++-+|+|+.++.++++......+..........-....+-+.+.+.+.+.+...
T Consensus 4 ~~~~~lgidIggt~i~~~l~d~~g~~l~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~ 61 (314)
T COG1940 4 EAMTVLGIDIGGTKIKVALVDLDGEILLRERIPTPTPDPEEAILEAILALVAELLKQA 61 (314)
T ss_pred cCcEEEEEEecCCEEEEEEECCCCcEEEEEEEecCCCCchhHHHHHHHHHHHHHHHhc
Confidence 4568999999999999999998876544444443333333577777777777766643
No 131
>PLN02666 5-oxoprolinase
Probab=69.60 E-value=6.7 Score=39.89 Aligned_cols=42 Identities=31% Similarity=0.489 Sum_probs=26.1
Q ss_pred eeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcceEEEEEe
Q 036208 175 RIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVSLLT 217 (279)
Q Consensus 175 ~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd~sv~~ 217 (279)
.+.+-|.|..+.+...... ......++++|+||.|||++++.
T Consensus 291 ti~SGPAagv~Gaa~l~~~-~~g~~~~I~~DmGGTTtDv~li~ 332 (1275)
T PLN02666 291 AILSGPAGGVVGYAQTTFG-LETEKPVIGFDMGGTSTDVSRYD 332 (1275)
T ss_pred eEEECHHHHHHHHHHHhcc-ccCCCCEEEEecCCceeeeEEEc
Confidence 3445566555543332100 11335799999999999999883
No 132
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=69.18 E-value=3.8 Score=29.85 Aligned_cols=18 Identities=28% Similarity=0.353 Sum_probs=15.2
Q ss_pred EEEEcCCcceEEEEEeCC
Q 036208 10 IGIDLGTTYSCVGVWQHD 27 (279)
Q Consensus 10 vGID~Gt~~t~v~~~~~~ 27 (279)
+|||+|+..+.+|+.+..
T Consensus 1 laiD~G~kriGvA~~d~~ 18 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDIT 18 (130)
T ss_pred CeEccCCCeEEEEEECCC
Confidence 599999999999987543
No 133
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=68.48 E-value=7.1 Score=34.53 Aligned_cols=45 Identities=20% Similarity=0.344 Sum_probs=27.8
Q ss_pred CEEEEEcCCcceEEEEEeCCceEEEecCCCCcccceEEEEcCCceeecHHHHhhh
Q 036208 8 PAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 62 (279)
Q Consensus 8 ~vvGID~Gt~~t~v~~~~~~~~~~v~~~~~~~~~ps~i~~~~~~~~~G~~a~~~~ 62 (279)
.-|+||+|||...++.++-..-+++ ...+..+.++.||.....+.
T Consensus 2 ~GiAvDiGTTti~~~L~dl~~G~~l----------~~~s~~NpQ~~~GaDViSRI 46 (412)
T PF14574_consen 2 YGIAVDIGTTTIAAYLVDLETGEVL----------ATASFLNPQRAYGADVISRI 46 (412)
T ss_dssp EEEEEEE-SSEEEEEEEETTT--EE----------EEEEEE-GGGGT-SSHHHHH
T ss_pred EEEEEEcchhheeeEEEECCCCCEE----------EeecccCCCCCcchHHHHHH
Confidence 3589999999999998854332333 34566677888887665543
No 134
>PF02639 DUF188: Uncharacterized BCR, YaiI/YqxD family COG1671; InterPro: IPR003791 This entry describes proteins of unknown function.
Probab=67.84 E-value=38 Score=24.66 Aligned_cols=104 Identities=15% Similarity=0.183 Sum_probs=67.2
Q ss_pred HHHHHHHcCCceeeeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcceEEEEEeEeC------------------CeE
Q 036208 162 TKDAGVISGLNVMRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVSLLTIEE------------------GIF 223 (279)
Q Consensus 162 l~~a~~~ag~~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd~sv~~~~~------------------~~~ 223 (279)
+.+++...+++.+.+.+-+ .... .......++||-|....|..+++... ...
T Consensus 2 i~~~a~r~~i~vi~Van~~--------h~~~--~~~~~~~i~Vd~g~DaaD~~I~~~~~~gDiVITqDigLA~~~l~Kga 71 (130)
T PF02639_consen 2 IIRVAKRYGIPVIFVANYS--------HRLP--RSPYVEMIVVDSGFDAADFYIVNHAKPGDIVITQDIGLASLLLAKGA 71 (130)
T ss_pred HHHHHHHHCCEEEEEeCCC--------ccCC--CCCCeEEEEECCCCChHHHHHHHcCCCCCEEEECCHHHHHHHHHCCC
Confidence 3456777777765444221 1111 12567889999999999888765532 134
Q ss_pred EEEEEeCCCCCchhHHHHHHH-HHHHHHHHhhhCC---CCCCCHHHHHHHHHHHHhh
Q 036208 224 EVKATAGDTHLGGEDFDNRMV-NHFVQEFKRKNKK---DISGNPRALRRLRTACERA 276 (279)
Q Consensus 224 ~~~~~~~~~~~Gg~~id~~l~-~~l~~~~~~~~~~---~~~~~~~~~~~l~~~~~~a 276 (279)
.++...+ ..+--.+|+..|. +++..++.+..+. ....+++...++.++.++.
T Consensus 72 ~vl~~rG-~~yt~~nI~~~L~~R~~~~~lR~~G~~~~gpk~~~~~d~~~F~~~L~~~ 127 (130)
T PF02639_consen 72 YVLNPRG-KEYTKENIDELLAMRHLMAKLRRAGKRTKGPKKFTKKDRQRFANALDRL 127 (130)
T ss_pred EEECCCC-CCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 4555555 7788899999996 7888888886541 2334566777777766653
No 135
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=67.72 E-value=5.8 Score=30.58 Aligned_cols=18 Identities=39% Similarity=0.674 Sum_probs=16.3
Q ss_pred EEEEcCCcceEEEEEeCC
Q 036208 10 IGIDLGTTYSCVGVWQHD 27 (279)
Q Consensus 10 vGID~Gt~~t~v~~~~~~ 27 (279)
||||.|.|+|-+.+..++
T Consensus 2 igIDvGGT~TD~v~~d~~ 19 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDED 19 (176)
T ss_pred eeEecCCCcEEEEEEeCC
Confidence 799999999999998665
No 136
>PF13941 MutL: MutL protein
Probab=67.44 E-value=18 Score=32.44 Aligned_cols=47 Identities=21% Similarity=0.265 Sum_probs=32.0
Q ss_pred EEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCCch-hHHHHHHHHHH
Q 036208 201 VLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGG-EDFDNRMVNHF 247 (279)
Q Consensus 201 vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg-~~id~~l~~~l 247 (279)
+|++|||+.+|-+++|....+..++++......--. .++..-+.+-+
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig~a~apTTv~~~Dv~~G~~~A~ 49 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIGQAEAPTTVEPGDVTIGLNNAL 49 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEEEEeCCCCcCcccHHHHHHHHH
Confidence 799999999999999997777777777653222112 25555554433
No 137
>PTZ00107 hexokinase; Provisional
Probab=64.50 E-value=22 Score=32.06 Aligned_cols=26 Identities=19% Similarity=0.405 Sum_probs=23.1
Q ss_pred CCCeEEEEEEecCcceEEEEEeEeCC
Q 036208 196 TGEKNVLIFDLGGGTFDVSLLTIEEG 221 (279)
Q Consensus 196 ~~~~~vlvvDiG~gttd~sv~~~~~~ 221 (279)
.+.+.+|.+|+||+++-+.++++.+.
T Consensus 71 ~E~G~fLAlDlGGTN~RV~~V~L~g~ 96 (464)
T PTZ00107 71 KEKGVYYAIDFGGTNFRAVRVSLRGG 96 (464)
T ss_pred CccceEEEEecCCceEEEEEEEeCCC
Confidence 36778999999999999999999865
No 138
>PRK13321 pantothenate kinase; Reviewed
Probab=63.60 E-value=42 Score=27.57 Aligned_cols=17 Identities=18% Similarity=0.589 Sum_probs=15.8
Q ss_pred EEEEEecCcceEEEEEe
Q 036208 201 VLIFDLGGGTFDVSLLT 217 (279)
Q Consensus 201 vlvvDiG~gttd~sv~~ 217 (279)
++.+|+|++++-+++++
T Consensus 2 iL~IDIGnT~ik~gl~~ 18 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFD 18 (256)
T ss_pred EEEEEECCCeEEEEEEE
Confidence 57899999999999998
No 139
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=63.19 E-value=9.3 Score=31.85 Aligned_cols=23 Identities=35% Similarity=0.355 Sum_probs=0.0
Q ss_pred CEEEEEcCCcceEEEEE-eCCceE
Q 036208 8 PAIGIDLGTTYSCVGVW-QHDRVE 30 (279)
Q Consensus 8 ~vvGID~Gt~~t~v~~~-~~~~~~ 30 (279)
..||||+|+|.+++++. .+++..
T Consensus 1 ~~iGiDiGgT~~Kiv~~~~~~~~~ 24 (279)
T TIGR00555 1 SRIGIDIGGTLIKVVYEEPKGRRK 24 (279)
T ss_pred CeEEEEeCcceEEEEEEcCCCcEE
No 140
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=62.29 E-value=18 Score=29.68 Aligned_cols=49 Identities=20% Similarity=0.323 Sum_probs=33.9
Q ss_pred EEEEEEecCcceEEEEEeEeC-CeEEE----------------------EEEeCCCCCchhHHHHHHHHHHHH
Q 036208 200 NVLIFDLGGGTFDVSLLTIEE-GIFEV----------------------KATAGDTHLGGEDFDNRMVNHFVQ 249 (279)
Q Consensus 200 ~vlvvDiG~gttd~sv~~~~~-~~~~~----------------------~~~~~~~~~Gg~~id~~l~~~l~~ 249 (279)
++|.+|+|.||+|+-.+.-.. +++.. +.-. +...||--.+..+.+|+..
T Consensus 2 kila~DvG~GTqDi~~~d~~~EnSl~mVmPspt~~~A~R~R~~~~~g~~l~l~-G~~MGGGp~travrrhlk~ 73 (342)
T COG4012 2 KILAIDVGVGTQDIVAYDGDPENSLRMVMPSPTSTLAQRLRFMLREGPYLALI-GVPMGGGPTTRAVRRHLKK 73 (342)
T ss_pred ceEEEEecCCceeEEEecCCcccceeEeecCchHHHHHHHHHHhccCCcEEEE-eeecCCChhhHHHHHHHhc
Confidence 579999999999998876532 11111 1112 2578888889888888854
No 141
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=62.11 E-value=16 Score=26.77 Aligned_cols=20 Identities=25% Similarity=0.287 Sum_probs=17.5
Q ss_pred EEEEEcCCcceEEEEEeCCc
Q 036208 9 AIGIDLGTTYSCVGVWQHDR 28 (279)
Q Consensus 9 vvGID~Gt~~t~v~~~~~~~ 28 (279)
+||||+|.....+++..+++
T Consensus 1 ~vGiDv~k~~~~v~v~~~~~ 20 (144)
T PF01548_consen 1 FVGIDVSKDTHDVCVIDPNG 20 (144)
T ss_pred eEEEEcccCeEEEEEEcCCC
Confidence 69999999999999986555
No 142
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=61.63 E-value=27 Score=23.45 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=17.9
Q ss_pred EEEEEEecCcceEEEEEeEeCC
Q 036208 200 NVLIFDLGGGTFDVSLLTIEEG 221 (279)
Q Consensus 200 ~vlvvDiG~gttd~sv~~~~~~ 221 (279)
.+|.+|+|+..+-++++.-...
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~~g~ 23 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDETGK 23 (99)
T ss_pred cEEEEccCCCeEEEEEECCCCC
Confidence 3789999999999999875543
No 143
>PRK13326 pantothenate kinase; Reviewed
Probab=61.28 E-value=13 Score=30.77 Aligned_cols=23 Identities=17% Similarity=0.391 Sum_probs=19.8
Q ss_pred CCCEEEEEcCCcceEEEEEeCCc
Q 036208 6 EGPAIGIDLGTTYSCVGVWQHDR 28 (279)
Q Consensus 6 ~~~vvGID~Gt~~t~v~~~~~~~ 28 (279)
-+.++.||+|.|+++++++++++
T Consensus 5 ~~~~L~IDiGNT~ik~glf~~~~ 27 (262)
T PRK13326 5 LSSQLIIDIGNTSISFALYKDNK 27 (262)
T ss_pred ccEEEEEEeCCCeEEEEEEECCE
Confidence 35689999999999999998764
No 144
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=60.96 E-value=25 Score=31.19 Aligned_cols=25 Identities=32% Similarity=0.545 Sum_probs=22.8
Q ss_pred CCCeEEEEEEecCcceEEEEEeEeC
Q 036208 196 TGEKNVLIFDLGGGTFDVSLLTIEE 220 (279)
Q Consensus 196 ~~~~~vlvvDiG~gttd~sv~~~~~ 220 (279)
+..+.+|++|+||...-++.+++.+
T Consensus 72 ~e~g~~LaiD~GGTnlRvc~V~l~g 96 (466)
T COG5026 72 NESGSVLAIDLGGTNLRVCLVVLGG 96 (466)
T ss_pred CCCCCEEEEecCCceEEEEEEEeCC
Confidence 4778999999999999999999984
No 145
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=60.12 E-value=17 Score=31.00 Aligned_cols=46 Identities=15% Similarity=0.374 Sum_probs=32.6
Q ss_pred EEEEecCcceEEEEEeEeCCeEEEEEE--eCCCCCchhHHHHHHHHHHHH
Q 036208 202 LIFDLGGGTFDVSLLTIEEGIFEVKAT--AGDTHLGGEDFDNRMVNHFVQ 249 (279)
Q Consensus 202 lvvDiG~gttd~sv~~~~~~~~~~~~~--~~~~~~Gg~~id~~l~~~l~~ 249 (279)
|+-||||..+.++++.......+.+.. -.+.++ ..++..|.+++.+
T Consensus 1 Lv~DIGGTn~Rlal~~~~~~~~~~~~~~~~~~~~~--~s~~~~l~~~l~~ 48 (316)
T PF02685_consen 1 LVADIGGTNTRLALAEPDGGPLQLIDIRRYPSADF--PSFEDALADYLAE 48 (316)
T ss_dssp EEEEEETTEEEEEEEECTCGG-EEEEEEEEEGCCC--CHHHHHHHHHHHH
T ss_pred CeEEeCcccEEEEEEEcCCCCccccccEEEecCCc--CCHHHHHHHHHHh
Confidence 688999999999999998876222222 222455 4588888888874
No 146
>PRK00292 glk glucokinase; Provisional
Probab=59.92 E-value=11 Score=32.08 Aligned_cols=53 Identities=23% Similarity=0.211 Sum_probs=31.7
Q ss_pred HHHHcCCceeeeecchhHHHHHhhhccC------CCCC--CCeEEEEEEecCcceEEEEEe
Q 036208 165 AGVISGLNVMRIINEPTAAAIAYGLDKK------AGST--GEKNVLIFDLGGGTFDVSLLT 217 (279)
Q Consensus 165 a~~~ag~~~~~~i~e~~Aaa~~~~~~~~------~~~~--~~~~vlvvDiG~gttd~sv~~ 217 (279)
..+..+++++.+..+..|+|++-..... .... ....++++-+|-|-=-..++.
T Consensus 86 l~~~~~~p~v~l~ND~~aaalgE~~~~~~~~~~~g~~~~~~~~~~~~v~~GTGiG~giv~~ 146 (316)
T PRK00292 86 MKQELGLDHLLLINDFTAQALAIPRLGEEDLVQIGGGEPVPGAPIAVIGPGTGLGVAGLVP 146 (316)
T ss_pred HHHHhCCCeEEEEecHHHHHcccccCCHhheeEeCCCCCCCCCcEEEEEcCCcceEEEEEe
Confidence 3344587778999999999998654210 0011 135677887776654443433
No 147
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=59.59 E-value=23 Score=30.67 Aligned_cols=53 Identities=15% Similarity=0.263 Sum_probs=32.0
Q ss_pred EEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCCc-hhHHHHHHH---HHHHHHHHh
Q 036208 201 VLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLG-GEDFDNRMV---NHFVQEFKR 253 (279)
Q Consensus 201 vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~G-g~~id~~l~---~~l~~~~~~ 253 (279)
+|+++.|+++|.+++|+-....++..-.+....++ ...+-..+. +.+.+.+.+
T Consensus 2 il~in~Gsts~k~alf~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~r~~~i~~~l~~ 58 (351)
T TIGR02707 2 ILVINPGSTSTKLAVFEDERPLFEETLRHSVEELGRFKNVIDQFEFRKQVILQFLEE 58 (351)
T ss_pred EEEEecCchhheEEEEeCCCceeeeeecCCHHHhcccccHHHHHHHHHHHHHHHHHH
Confidence 79999999999999998877655444333322333 223333333 455555543
No 148
>PLN02596 hexokinase-like
Probab=59.36 E-value=56 Score=29.75 Aligned_cols=27 Identities=11% Similarity=0.064 Sum_probs=23.5
Q ss_pred CCCCeEEEEEEecCcceEEEEEeEeCC
Q 036208 195 STGEKNVLIFDLGGGTFDVSLLTIEEG 221 (279)
Q Consensus 195 ~~~~~~vlvvDiG~gttd~sv~~~~~~ 221 (279)
-.+.+.+|.+|+||.++-+..+++.++
T Consensus 92 G~E~G~yLAlDlGGTNfRV~~V~L~g~ 118 (490)
T PLN02596 92 GDEKGLYYGLNLRGSNFLLLRARLGGK 118 (490)
T ss_pred CCcceEEEEEeeCCceEEEEEEEEcCC
Confidence 346778999999999999999999864
No 149
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=58.62 E-value=8.5 Score=33.69 Aligned_cols=20 Identities=35% Similarity=0.753 Sum_probs=17.5
Q ss_pred CeEEEEEEecCcceEEEEEe
Q 036208 198 EKNVLIFDLGGGTFDVSLLT 217 (279)
Q Consensus 198 ~~~vlvvDiG~gttd~sv~~ 217 (279)
..++.++|+|||+|.++..-
T Consensus 212 ~~tvgv~DLGGGSTQi~f~p 231 (453)
T KOG1385|consen 212 HRTVGVVDLGGGSTQITFLP 231 (453)
T ss_pred CCceEEEEcCCceEEEEEec
Confidence 67899999999999998654
No 150
>PRK13320 pantothenate kinase; Reviewed
Probab=58.13 E-value=14 Score=30.14 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=18.5
Q ss_pred CEEEEEcCCcceEEEEEeCCc
Q 036208 8 PAIGIDLGTTYSCVGVWQHDR 28 (279)
Q Consensus 8 ~vvGID~Gt~~t~v~~~~~~~ 28 (279)
.++.||.|.|+++.++++++.
T Consensus 3 M~L~iDiGNT~ik~~~~~~~~ 23 (244)
T PRK13320 3 MNLVIDIGNTTTKLAVFEGDE 23 (244)
T ss_pred eEEEEEeCCCcEEEEEEECCE
Confidence 389999999999999988664
No 151
>PLN02914 hexokinase
Probab=57.86 E-value=37 Score=30.85 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=23.4
Q ss_pred CCCCeEEEEEEecCcceEEEEEeEeCC
Q 036208 195 STGEKNVLIFDLGGGTFDVSLLTIEEG 221 (279)
Q Consensus 195 ~~~~~~vlvvDiG~gttd~sv~~~~~~ 221 (279)
-.+.+.++.+|+||.++-+..+++.+.
T Consensus 91 G~E~G~fLAlDlGGTNfRV~~V~L~g~ 117 (490)
T PLN02914 91 GNEKGLFYALDLGGTNFRVLRVQLGGK 117 (490)
T ss_pred CCeeeEEEEEecCCceEEEEEEEecCC
Confidence 346778999999999999999999873
No 152
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=54.45 E-value=13 Score=33.77 Aligned_cols=20 Identities=35% Similarity=0.589 Sum_probs=17.8
Q ss_pred CCCEEEEEcCCcceEEEEEe
Q 036208 6 EGPAIGIDLGTTYSCVGVWQ 25 (279)
Q Consensus 6 ~~~vvGID~Gt~~t~v~~~~ 25 (279)
..++|||||||..-++++++
T Consensus 2 ~~~~iGvDvGTgSaRA~v~D 21 (544)
T COG1069 2 MAYVIGVDVGTGSARAGVFD 21 (544)
T ss_pred ccEEEEEeecCCceeEEEEE
Confidence 45799999999999999983
No 153
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=54.35 E-value=8.5 Score=34.76 Aligned_cols=17 Identities=35% Similarity=0.415 Sum_probs=15.2
Q ss_pred EEEEcCCcceEEEEEeC
Q 036208 10 IGIDLGTTYSCVGVWQH 26 (279)
Q Consensus 10 vGID~Gt~~t~v~~~~~ 26 (279)
||||+||+++++++.+.
T Consensus 1 lgIDiGtt~ik~~l~d~ 17 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDE 17 (481)
T ss_pred CceeecCcceEEEEECC
Confidence 69999999999999853
No 154
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=53.92 E-value=94 Score=23.47 Aligned_cols=88 Identities=19% Similarity=0.311 Sum_probs=48.7
Q ss_pred eHHHHHHHHHHHHHHHHHHHhCCcccceEEeeCCCCCHHH----------------HHHHHHHHHHcCCceeeeecchhH
Q 036208 119 SAEEISSMVLNKMKEIAEAYLGTTIKNAVVTVPAYFNDSQ----------------RQATKDAGVISGLNVMRIINEPTA 182 (279)
Q Consensus 119 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~isvP~~~~~~~----------------r~~l~~a~~~ag~~~~~~i~e~~A 182 (279)
++++++..+.+.+.+.... .+.. .+.+++|...+... .+.|++ ..++ ++.+..+..|
T Consensus 31 ~~~~~~~~l~~~i~~~~~~-~~~~--gIgi~~pG~v~~~~g~i~~~~~~~~~~~~l~~~l~~---~~~~-pv~i~Nd~~~ 103 (179)
T PF00480_consen 31 SPEELLDALAELIERLLAD-YGRS--GIGISVPGIVDSEKGRIISSPNPGWENIPLKEELEE---RFGV-PVIIENDANA 103 (179)
T ss_dssp SHHHHHHHHHHHHHHHHHH-HTCE--EEEEEESSEEETTTTEEEECSSGTGTTCEHHHHHHH---HHTS-EEEEEEHHHH
T ss_pred CHHHHHHHHHHHHHHHHhh-cccc--cEEEeccccCcCCCCeEEecCCCCcccCCHHHHhhc---ccce-EEEEecCCCc
Confidence 4566666555544444433 3322 55555555444332 223333 3355 4678888898
Q ss_pred HHHHhhhccCCCCCCCeEEEEEEecCcceEEEEE
Q 036208 183 AAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVSLL 216 (279)
Q Consensus 183 aa~~~~~~~~~~~~~~~~vlvvDiG~gttd~sv~ 216 (279)
+|++...... ......++++.+|.| .-.+++
T Consensus 104 ~a~ae~~~~~--~~~~~~~~~l~ig~G-iG~~ii 134 (179)
T PF00480_consen 104 AALAEYWFGA--AKDCDNFLYLYIGTG-IGAGII 134 (179)
T ss_dssp HHHHHHHHST--TTTTSSEEEEEESSS-EEEEEE
T ss_pred ceeehhhcCc--cCCcceEEEEEeecC-CCccee
Confidence 8888766443 224567788888776 344444
No 155
>PF09843 DUF2070: Predicted membrane protein (DUF2070); InterPro: IPR019204 This domain of unknown function is found in various bacterial and archael hypothetical proteins, as well as in prokaryotic polyketide synthase.
Probab=53.75 E-value=44 Score=25.77 Aligned_cols=79 Identities=14% Similarity=0.115 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHcCCceeeeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCCchh
Q 036208 158 QRQATKDAGVISGLNVMRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGE 237 (279)
Q Consensus 158 ~r~~l~~a~~~ag~~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg~ 237 (279)
....++.+.+..|+....-+.-..|.+..+......--..+..++++++|+..+-+.++ -|+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~lg~~gi~~~~v~~~g~~~~lv~~------------------DsN 83 (179)
T PF09843_consen 22 LDPALKLALEALGFKEEYPLEVGYAEAEPFLGEHEGLGIGGISALVVEVGGQRSALVLA------------------DSN 83 (179)
T ss_pred HHHHHHHHHHhhcCccccccccceEeccCCCCCCCCcCccccEEEEEEeCCcEEEEEEE------------------ECC
Confidence 34556666666666432222223333332222222212245566777776655433333 248
Q ss_pred HHHHHHHHHHHHHHHhh
Q 036208 238 DFDNRMVNHFVQEFKRK 254 (279)
Q Consensus 238 ~id~~l~~~l~~~~~~~ 254 (279)
+++..|++.|.+.+.+.
T Consensus 84 Nm~~~lr~~i~~~~~~~ 100 (179)
T PF09843_consen 84 NMEPGLREKIREALGDV 100 (179)
T ss_pred CCCHHHHHHHHHHHhhh
Confidence 89999999999999876
No 156
>PRK13318 pantothenate kinase; Reviewed
Probab=53.43 E-value=79 Score=25.92 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=15.9
Q ss_pred EEEEEecCcceEEEEEe
Q 036208 201 VLIFDLGGGTFDVSLLT 217 (279)
Q Consensus 201 vlvvDiG~gttd~sv~~ 217 (279)
+|.+|+|++++-+++++
T Consensus 2 iL~IDIGnT~iK~al~d 18 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYE 18 (258)
T ss_pred EEEEEECCCcEEEEEEE
Confidence 58899999999999998
No 157
>TIGR00228 ruvC crossover junction endodeoxyribonuclease RuvC. Endonuclease that resolves Holliday junction intermediates in genetic recombination. The active form of the protein is a dimer. Structure studies reveals that the catalytic center, comprised of four acidic residues, lies at the bottom of a cleft that fits a DNA duplex. The model hits a single Synechocystis PCC6803 protein at a score of 30, below the trusted cutoff, that appears orthologous and may act as authentic RuvC.
Probab=52.41 E-value=16 Score=27.49 Aligned_cols=17 Identities=35% Similarity=0.587 Sum_probs=15.4
Q ss_pred EEEEEcCCcceEEEEEe
Q 036208 9 AIGIDLGTTYSCVGVWQ 25 (279)
Q Consensus 9 vvGID~Gt~~t~v~~~~ 25 (279)
|+|||=|+..+..++.+
T Consensus 1 ILGIDPGl~~tG~gvi~ 17 (156)
T TIGR00228 1 ILGIDPGSRVTGYGVIR 17 (156)
T ss_pred CEeECcccccccEEEEE
Confidence 68999999999999974
No 158
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=52.05 E-value=7.6 Score=34.89 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=14.5
Q ss_pred EEEEcCCcceEEEEEe
Q 036208 10 IGIDLGTTYSCVGVWQ 25 (279)
Q Consensus 10 vGID~Gt~~t~v~~~~ 25 (279)
+|||+||++++++++.
T Consensus 1 ~aiD~Gtt~~k~~l~~ 16 (454)
T TIGR02627 1 VAVDLGASSGRVMLAS 16 (454)
T ss_pred CcEeccCCchheEEEE
Confidence 5899999999999984
No 159
>TIGR01865 cas_Csn1 CRISPR-associated protein, Csn1 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.
Probab=50.77 E-value=15 Score=35.71 Aligned_cols=20 Identities=20% Similarity=0.380 Sum_probs=17.5
Q ss_pred CEEEEEcCCcceEEEEEeCC
Q 036208 8 PAIGIDLGTTYSCVGVWQHD 27 (279)
Q Consensus 8 ~vvGID~Gt~~t~v~~~~~~ 27 (279)
.+||+|+||++++.|+.+.+
T Consensus 2 y~LGLDiGt~SvGWAVv~~d 21 (805)
T TIGR01865 2 YILGLDIGIASVGWAIVEDD 21 (805)
T ss_pred ceeEEeecccceeEEEEecc
Confidence 58999999999999998544
No 160
>PTZ00288 glucokinase 1; Provisional
Probab=50.46 E-value=15 Score=32.53 Aligned_cols=20 Identities=30% Similarity=0.376 Sum_probs=17.7
Q ss_pred CCEEEEEcCCcceEEEEEeC
Q 036208 7 GPAIGIDLGTTYSCVGVWQH 26 (279)
Q Consensus 7 ~~vvGID~Gt~~t~v~~~~~ 26 (279)
.++||+|+|.|++++++.+.
T Consensus 26 ~~~~~~DiGgt~~R~~~~~~ 45 (405)
T PTZ00288 26 PIFVGCDVGGTNARVGFARE 45 (405)
T ss_pred CeEEEEEecCCceEEEEEec
Confidence 56999999999999999844
No 161
>PRK13324 pantothenate kinase; Reviewed
Probab=50.35 E-value=21 Score=29.44 Aligned_cols=20 Identities=30% Similarity=0.620 Sum_probs=17.6
Q ss_pred EEEEEcCCcceEEEEEeCCc
Q 036208 9 AIGIDLGTTYSCVGVWQHDR 28 (279)
Q Consensus 9 vvGID~Gt~~t~v~~~~~~~ 28 (279)
++.||+|.|+++.++++++.
T Consensus 2 iL~iDiGNT~ik~gl~~~~~ 21 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDGDR 21 (258)
T ss_pred EEEEEeCCCceEEEEEECCE
Confidence 78999999999999987553
No 162
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=50.29 E-value=52 Score=27.19 Aligned_cols=57 Identities=18% Similarity=0.061 Sum_probs=36.0
Q ss_pred CCCeEEEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCCchhHHHHHHHHHHHHHHH
Q 036208 196 TGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFK 252 (279)
Q Consensus 196 ~~~~~vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~~~~ 252 (279)
.+...++.+|+|.++.-+.+.+.....+.+....+..--.|.-+|..-...+.+++.
T Consensus 21 ~~~~~~~~iDiGSssi~~vv~~~~~~~~~~~~~~~~~vr~G~i~di~~a~~~i~~~~ 77 (267)
T PRK15080 21 TESPLKVGVDLGTANIVLAVLDEDGQPVAGALEWADVVRDGIVVDFIGAVTIVRRLK 77 (267)
T ss_pred CCCCEEEEEEccCceEEEEEEcCCCCEEEEEeccccccCCCEEeeHHHHHHHHHHHH
Confidence 457789999999999999988766555555555443444455555444444444333
No 163
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=50.03 E-value=24 Score=27.86 Aligned_cols=20 Identities=25% Similarity=0.376 Sum_probs=16.7
Q ss_pred EEEEEcCCcceEEEEEeCCc
Q 036208 9 AIGIDLGTTYSCVGVWQHDR 28 (279)
Q Consensus 9 vvGID~Gt~~t~v~~~~~~~ 28 (279)
++-||+|.|++++++.+++.
T Consensus 1 ~L~iDiGNT~ik~~~~~~~~ 20 (206)
T PF03309_consen 1 ILLIDIGNTRIKWALFDGDK 20 (206)
T ss_dssp EEEEEE-SSEEEEEEEETTE
T ss_pred CEEEEECCCeEEEEEEECCE
Confidence 57899999999999997774
No 164
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=49.83 E-value=16 Score=32.73 Aligned_cols=21 Identities=33% Similarity=0.346 Sum_probs=18.6
Q ss_pred CCCEEEEEcCCcceEEEEEeC
Q 036208 6 EGPAIGIDLGTTYSCVGVWQH 26 (279)
Q Consensus 6 ~~~vvGID~Gt~~t~v~~~~~ 26 (279)
+.+|++||-|||.+++.+++.
T Consensus 4 ~~yIlAiDqGTTssRaivfd~ 24 (499)
T COG0554 4 DKYILAIDQGTTSSRAIVFDE 24 (499)
T ss_pred ccEEEEEecCCcceeEEEECC
Confidence 578999999999999999843
No 165
>PRK12408 glucokinase; Provisional
Probab=49.36 E-value=16 Score=31.47 Aligned_cols=50 Identities=18% Similarity=0.190 Sum_probs=30.0
Q ss_pred HHcCCceeeeecchhHHHHHhhhccCC-------CCCCC-eEEEEEEecCcceEEEEE
Q 036208 167 VISGLNVMRIINEPTAAAIAYGLDKKA-------GSTGE-KNVLIFDLGGGTFDVSLL 216 (279)
Q Consensus 167 ~~ag~~~~~~i~e~~Aaa~~~~~~~~~-------~~~~~-~~vlvvDiG~gttd~sv~ 216 (279)
+..|++++.+..+..|+|++-...... ..... ..++++-+|-|-=-..++
T Consensus 106 ~~~~~~~V~l~ND~naaa~gE~~~~~~~~~~~~g~~~~~~~~~~~i~~GTGiGggivi 163 (336)
T PRK12408 106 AQLGLQAVHLVNDFEAVAYAAPYMEGNQVLQLSGPAQAAAGPALVLGPGTGLGAALWI 163 (336)
T ss_pred HHcCCCeEEEeecHHHHHcccccCCHhHeeeecCCCCCCCCcEEEEECCCcceEEEEE
Confidence 345887799999999999986544211 01122 467777776554333333
No 166
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=49.12 E-value=21 Score=29.15 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=16.9
Q ss_pred EEEEcCCcceEEEEEeCCc
Q 036208 10 IGIDLGTTYSCVGVWQHDR 28 (279)
Q Consensus 10 vGID~Gt~~t~v~~~~~~~ 28 (279)
+.||+|.|+++++++++++
T Consensus 2 L~iDiGNT~i~~g~~~~~~ 20 (243)
T TIGR00671 2 LLIDVGNTRIVFALNSGNK 20 (243)
T ss_pred EEEEECCCcEEEEEEECCE
Confidence 6899999999999998764
No 167
>PLN02362 hexokinase
Probab=48.83 E-value=42 Score=30.70 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=23.1
Q ss_pred CCCeEEEEEEecCcceEEEEEeEeCC
Q 036208 196 TGEKNVLIFDLGGGTFDVSLLTIEEG 221 (279)
Q Consensus 196 ~~~~~vlvvDiG~gttd~sv~~~~~~ 221 (279)
.+.+.++.+|+||.++-+..+++.++
T Consensus 92 ~E~G~fLAlDlGGTNfRV~~V~L~g~ 117 (509)
T PLN02362 92 SEIGTYYALDLGGTNFRVLRVQLGGQ 117 (509)
T ss_pred CcceeEEEEecCCceEEEEEEEecCC
Confidence 46778999999999999999999874
No 168
>KOG1386 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=48.41 E-value=84 Score=28.42 Aligned_cols=135 Identities=18% Similarity=0.222 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCc---ccceEEeeCCCCC---HHHHHHH----HHHHH-HcCC----ceeeeecchhHH-
Q 036208 120 AEEISSMVLNKMKEIAEAYLGTT---IKNAVVTVPAYFN---DSQRQAT----KDAGV-ISGL----NVMRIINEPTAA- 183 (279)
Q Consensus 120 ~~~~~~~~l~~l~~~~~~~~~~~---~~~~~isvP~~~~---~~~r~~l----~~a~~-~ag~----~~~~~i~e~~Aa- 183 (279)
|+++ ..+|+.+++.|+.+.... .+.+.|..-+..- ..+++++ +.... ..++ ..+++|+-.+-.
T Consensus 60 P~~a-~~~l~pLlefA~~~IPk~~h~~Tpl~l~ATAGMRLL~~~~qeaIl~~l~~~l~~~s~f~f~~~~a~IIsG~~EGv 138 (501)
T KOG1386|consen 60 PEGA-SVYLTPLLEFAKEHIPKEKHKETPLFLGATAGMRLLPLAQQEAILEVLRRVLKSLSDFLFDDEWARIISGKEEGV 138 (501)
T ss_pred hhhh-HHHHHHHHHHHHhhCCHhhcCCCCeEEEecccceecCcccHHHHHHHHHHhcccccCCcccccccEEeeccccee
Confidence 4554 488888888887765421 1233332222221 1223332 22222 2233 336777633322
Q ss_pred ----HHHhhhccCCC---CC-CCeEEEEEEecCcceEEEEEeEeC--------------C-----eEEEEEEeCCCCCch
Q 036208 184 ----AIAYGLDKKAG---ST-GEKNVLIFDLGGGTFDVSLLTIEE--------------G-----IFEVKATAGDTHLGG 236 (279)
Q Consensus 184 ----a~~~~~~~~~~---~~-~~~~vlvvDiG~gttd~sv~~~~~--------------~-----~~~~~~~~~~~~~Gg 236 (279)
++.|+...-.. .. ...++-++|+||.++.++..--.+ + .+++-. ++-..+|+
T Consensus 139 YgWi~~NY~LG~f~~~~~~~~~~~T~G~lDlGGAS~QItFe~~~~~e~~~~~~~~~i~~G~~~~~~Y~ly~-~SfLgyG~ 217 (501)
T KOG1386|consen 139 YGWIAANYLLGRFGKKNRWDSRKETFGALDLGGASTQITFEPPNQQEEVPKENLQTINYGNDNLVKYRLYV-HSFLGYGA 217 (501)
T ss_pred hhhHHHHHHHHhccccCcccCCcceeeeEecCCceeEEEEecCccccccchhhhhheecCCCCceEEEEEE-Eeecccch
Confidence 22233322221 12 567899999999999999765421 1 233333 34477888
Q ss_pred hHHHHHHHHHHHHHHHhhhC
Q 036208 237 EDFDNRMVNHFVQEFKRKNK 256 (279)
Q Consensus 237 ~~id~~l~~~l~~~~~~~~~ 256 (279)
++--+....+|.+++.++.+
T Consensus 218 N~A~~ry~~~Ll~~~~n~n~ 237 (501)
T KOG1386|consen 218 NEALDRYLAMLLEKLPNKNG 237 (501)
T ss_pred hHHHHHHHHHHHHhcccccc
Confidence 88888877788877777653
No 169
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=47.04 E-value=18 Score=34.15 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=18.0
Q ss_pred CCCCEEEEEcCCcceEEEEEe
Q 036208 5 GEGPAIGIDLGTTYSCVGVWQ 25 (279)
Q Consensus 5 ~~~~vvGID~Gt~~t~v~~~~ 25 (279)
....++|||+|.|++++++.+
T Consensus 16 ~~~~~L~iDIGGT~ir~al~~ 36 (638)
T PRK14101 16 ADGPRLLADVGGTNARFALET 36 (638)
T ss_pred CCCCEEEEEcCchhheeeeec
Confidence 345699999999999999884
No 170
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=45.63 E-value=26 Score=29.42 Aligned_cols=21 Identities=19% Similarity=0.055 Sum_probs=18.7
Q ss_pred CCCCEEEEEcCCcceEEEEEe
Q 036208 5 GEGPAIGIDLGTTYSCVGVWQ 25 (279)
Q Consensus 5 ~~~~vvGID~Gt~~t~v~~~~ 25 (279)
.+..+||||=|.|.|++.+.+
T Consensus 3 ~~~~~lGVDGGGTkt~a~l~~ 23 (301)
T COG2971 3 PMPYFLGVDGGGTKTRAVLAD 23 (301)
T ss_pred CccEEEEEccCCcceEEEEEc
Confidence 467899999999999998876
No 171
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=45.37 E-value=30 Score=29.06 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=19.3
Q ss_pred CCEEEEEcCCcceEEEEEeCCceEEEe
Q 036208 7 GPAIGIDLGTTYSCVGVWQHDRVEIIA 33 (279)
Q Consensus 7 ~~vvGID~Gt~~t~v~~~~~~~~~~v~ 33 (279)
..+|.+|.|.|.|-++...+|.|.+-.
T Consensus 77 ~~~i~vDmGGTTtDi~~i~~G~p~~~~ 103 (290)
T PF01968_consen 77 ENAIVVDMGGTTTDIALIKDGRPEISS 103 (290)
T ss_dssp SSEEEEEE-SS-EEEEEEETTEE----
T ss_pred CCEEEEeCCCCEEEEEEEECCeeeccc
Confidence 469999999999999999999886543
No 172
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=45.31 E-value=1e+02 Score=25.92 Aligned_cols=71 Identities=21% Similarity=0.305 Sum_probs=41.2
Q ss_pred cccceEEeeCCCCCHHH------------HHHHHHHH-HHcCCceeeeecchhHHHHHhhhccCCCCCCCeEEEEEEecC
Q 036208 142 TIKNAVVTVPAYFNDSQ------------RQATKDAG-VISGLNVMRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGG 208 (279)
Q Consensus 142 ~~~~~~isvP~~~~~~~------------r~~l~~a~-~~ag~~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~ 208 (279)
.+..+.+++|...+... ...+.+.+ +..+++ +.+.++..|+|++-..... ......++++.+|.
T Consensus 57 ~i~gIgva~pG~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~~p-v~v~NDa~~~alaE~~~g~--~~~~~~~~~v~igt 133 (318)
T TIGR00744 57 EIVAIGIGAPGPVNRQRGTVYFAVNLDWKQEPLKEKVEARVGLP-VVVENDANAAALGEYKKGA--GKGARDVICITLGT 133 (318)
T ss_pred ceEEEEEeccccccCCCCEEEecCCCCCCCCCHHHHHHHHHCCC-EEEechHHHHHHHHHHhcc--cCCCCcEEEEEeCC
Confidence 34567778876554221 11233332 334654 6788888888887655433 12456788888887
Q ss_pred cceEEEEE
Q 036208 209 GTFDVSLL 216 (279)
Q Consensus 209 gttd~sv~ 216 (279)
|- -.+++
T Consensus 134 Gi-G~giv 140 (318)
T TIGR00744 134 GL-GGGII 140 (318)
T ss_pred cc-EEEEE
Confidence 76 44443
No 173
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=45.31 E-value=22 Score=29.06 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=18.2
Q ss_pred CCEEEEEcCCcceEEEEEeCC
Q 036208 7 GPAIGIDLGTTYSCVGVWQHD 27 (279)
Q Consensus 7 ~~vvGID~Gt~~t~v~~~~~~ 27 (279)
...||||-||+-++.+++++.
T Consensus 3 m~fVGiDHGTsgi~~ai~d~e 23 (332)
T COG4020 3 MMFVGIDHGTSGIKFAIYDGE 23 (332)
T ss_pred eEEEeecCCCcceEEEEEcCC
Confidence 468999999999999998644
No 174
>COG0837 Glk Glucokinase [Carbohydrate transport and metabolism]
Probab=44.93 E-value=50 Score=27.86 Aligned_cols=48 Identities=15% Similarity=0.168 Sum_probs=0.0
Q ss_pred EEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCCchhHHHHHHHHHHHHH
Q 036208 201 VLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQE 250 (279)
Q Consensus 201 vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~~ 250 (279)
.||=||||..+-+++++...........-.+.++ ..++..+.+++.+.
T Consensus 8 ~LvgDIGGTnaRfaLv~~a~~~~~~~~~~~~~dy--psle~av~~yl~~~ 55 (320)
T COG0837 8 RLVGDIGGTNARFALVEIAPAEPLQAETYACADY--PSLEEAVQDYLSEH 55 (320)
T ss_pred eEEEecCCcceEEEEeccCCCCccccceecccCc--CCHHHHHHHHHHHh
No 175
>PF01424 R3H: R3H domain; InterPro: IPR001374 The R3H motif: a domain that binds single-stranded nucleic acids. The most prominent feature of the R3H motif is the presence of an invariant arginine residue and a highly conserved histidine residue that are separated by three residues. The motif also displays a conserved pattern of hydrophobic residues, prolines and glycines. The R3H motif is present in proteins from a diverse range of organisms that includes Eubacteria, green plants, fungi and various groups of metazoans. Intriguingly, it has not yet been identified in Archaea and Escherichia coli. The sequences that contain the R3H domain, many of which are hypothetical proteins predicted from genome sequencing projects, can be grouped into eight families on the basis of similarities outside the R3H region. Three of the families contain ATPase domains either upstream (families II and VII) or downstream of the R3H domain (family VIII). The N-terminal part of members of family VII contains an SF1 helicase domain5. The C-terminal part of family VIII contains an SF2 DEAH helicase domain5. The ATPase domain in the members of family II is similar to the stage-III sporulation protein AA (S3AA_BACSU), the proteasome ATPase, bacterial transcription-termination factor r and the mitochondrial F1-ATPase b subunit (the F5 helicase family5). Family VI contains Cys-rich repeats6, as well as a ring-type zinc finger upstream of the R3H domain. JAG bacterial proteins (family I) contain a KH domain N-terminal to the R3H domain. The functions of other domains in R3H proteins support the notion that the R3H domain might be involved in interactions with single-stranded nucleic acids [].; GO: 0003676 nucleic acid binding; PDB: 1WHR_A 1MSZ_A 1UG8_A 3GKU_B 2CPM_A.
Probab=44.31 E-value=58 Score=19.88 Aligned_cols=26 Identities=19% Similarity=0.340 Sum_probs=20.9
Q ss_pred EEeeCCCCCHHHHHHHHHHHHHcCCce
Q 036208 147 VVTVPAYFNDSQRQATKDAGVISGLNV 173 (279)
Q Consensus 147 ~isvP~~~~~~~r~~l~~a~~~ag~~~ 173 (279)
.++.|+ .+..+|..+.+.|+..|+..
T Consensus 22 ~~~f~p-m~~~~R~~iH~~a~~~gL~s 47 (63)
T PF01424_consen 22 SLEFPP-MNSFERKLIHELAEYYGLKS 47 (63)
T ss_dssp EEEEEC---SHHHHHHHHHHHHCTEEE
T ss_pred EEEECC-CCHHHHHHHHHHHHHCCCEE
Confidence 778886 89999999999999998754
No 176
>PF01150 GDA1_CD39: GDA1/CD39 (nucleoside phosphatase) family; InterPro: IPR000407 A number of nucleoside diphosphate and triphosphate hydrolases as well as some yet uncharacterised proteins have been found to belong to the same family [, ]. The uncharacterised proteins all seem to be membrane-bound. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016787 hydrolase activity; PDB: 3AAP_A 3AAR_A 3AAQ_A 3AGR_A 4A5B_B 4A57_D 4A59_A 4A5A_B 3CJA_A 3CJ1_A ....
Probab=44.03 E-value=28 Score=31.03 Aligned_cols=125 Identities=17% Similarity=0.216 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHhCC---cccceEEeeCCCC---CHHHHHHHHHHHHH-----cCC----ceeeeecchhHHHHHhh
Q 036208 124 SSMVLNKMKEIAEAYLGT---TIKNAVVTVPAYF---NDSQRQATKDAGVI-----SGL----NVMRIINEPTAAAIAYG 188 (279)
Q Consensus 124 ~~~~l~~l~~~~~~~~~~---~~~~~~isvP~~~---~~~~r~~l~~a~~~-----ag~----~~~~~i~e~~Aaa~~~~ 188 (279)
++.+|..|++.|...... ..+.+.+--.+.. +..++..+.+.+.. .++ ..+++|+-.+-..+.|.
T Consensus 65 ~~~~l~~ll~~a~~~ip~~~~~~tpi~l~ATAGmRlL~~~~~~~il~~~~~~l~~~~~f~~~~~~v~visG~eEg~y~Wv 144 (434)
T PF01150_consen 65 AAESLQPLLDFAKSVIPKSQHSSTPIYLGATAGMRLLPEEQQEAILDEVRNYLRSSSPFPFRDSWVRVISGEEEGIYGWV 144 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHEEEEEEE-HHHHTHHHHHHHHHHHHHHHCHHCHCTSSEEETTCEE--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCHHHhCCeeEEEecccccEECChhhHHHHHHHHHHhhccCCCCccCccceEecCHHHhhHhHHH
Confidence 455666666666655432 1122222222111 13345555444332 243 33778876555544443
Q ss_pred -----hccCCCC----CCCeEEEEEEecCcceEEEEEeEe---------------------CCeEEEEEEeCCCCCchhH
Q 036208 189 -----LDKKAGS----TGEKNVLIFDLGGGTFDVSLLTIE---------------------EGIFEVKATAGDTHLGGED 238 (279)
Q Consensus 189 -----~~~~~~~----~~~~~vlvvDiG~gttd~sv~~~~---------------------~~~~~~~~~~~~~~~Gg~~ 238 (279)
...-... ....++.++|+||++|.++..--. ...+.+..++. ..+|-..
T Consensus 145 tvNyl~g~l~~~~~~~~~~~t~g~lDlGGaStQIaf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vys~Sy-LgyG~~~ 223 (434)
T PF01150_consen 145 TVNYLLGRLDSSGASKSPSNTVGALDLGGASTQIAFEPSEGTFSNSSLEDINSYIRRLKLGGKNYDVYSHSY-LGYGLNE 223 (434)
T ss_dssp HHHHHTTTSSSSTEEEEESS-EEEEEE-SSEEEEEEEETTTTTSCTTSSGCE-GCCCCCCTTCCCEEEEEEE-ETCSHHH
T ss_pred HHHHHhCccccccccCCCCceEEEEecCCcceeeeeccCcccccccccccccchheeeccccceeEEEEeec-ccccHHH
Confidence 2222111 135789999999999999954430 01344455554 6677666
Q ss_pred HHHHHHHHHHH
Q 036208 239 FDNRMVNHFVQ 249 (279)
Q Consensus 239 id~~l~~~l~~ 249 (279)
.=..+...+.+
T Consensus 224 Ar~~~l~~l~~ 234 (434)
T PF01150_consen 224 ARKRYLASLVS 234 (434)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhh
Confidence 55555554443
No 177
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=43.93 E-value=3.4e+02 Score=27.08 Aligned_cols=91 Identities=12% Similarity=0.001 Sum_probs=47.7
Q ss_pred EeHHHHHHHHHHHHHH-H---HHHHhCCcccceEEeeCCCCCHHHHHHHHHHHHHc---CCce-eeeecchhHHHHHhhh
Q 036208 118 FSAEEISSMVLNKMKE-I---AEAYLGTTIKNAVVTVPAYFNDSQRQATKDAGVIS---GLNV-MRIINEPTAAAIAYGL 189 (279)
Q Consensus 118 ~~~~~~~~~~l~~l~~-~---~~~~~~~~~~~~~isvP~~~~~~~r~~l~~a~~~a---g~~~-~~~i~e~~Aaa~~~~~ 189 (279)
.+..+++...|+.++. + +-.+.......+=++.+...++++...+.+.+... +++. ...++..+|...+-..
T Consensus 593 HTAtHLL~~al~~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~~vN~~I~~n~pV~~~~~~~~eA~~~~~~~ 672 (900)
T PRK13902 593 HTATHIILAAARKVLGDHVWQAGAQKTVDKARLDITHYKRITREEVKEIERLANEIVMENRPVKVEWMDRNEAEQKYGFR 672 (900)
T ss_pred HHHHHHHHHHHHHHhCCceeecCccccCCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEecCHHHHHhccchh
Confidence 4667777777766643 1 11122233335566777788888877776665544 4443 3344444444432111
Q ss_pred ccCCCCCCCeEEEEEEecC
Q 036208 190 DKKAGSTGEKNVLIFDLGG 208 (279)
Q Consensus 190 ~~~~~~~~~~~vlvvDiG~ 208 (279)
........+..+=||.||+
T Consensus 673 l~~~g~~~~~~VRVV~Ig~ 691 (900)
T PRK13902 673 LYQGGVPPGKTIRVVEIGD 691 (900)
T ss_pred hhccCCCCCCeEEEEEECC
Confidence 1111122356677888886
No 178
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=43.37 E-value=92 Score=23.93 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=17.7
Q ss_pred EEEEecCcceEEEEEeEeCCeE
Q 036208 202 LIFDLGGGTFDVSLLTIEEGIF 223 (279)
Q Consensus 202 lvvDiG~gttd~sv~~~~~~~~ 223 (279)
+-+|+||..||+.++.-..+.+
T Consensus 2 igIDvGGT~TD~v~~d~~~~~~ 23 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDEDTGVV 23 (176)
T ss_pred eeEecCCCcEEEEEEeCCCCEE
Confidence 4589999999999998775433
No 179
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=43.27 E-value=64 Score=27.19 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=20.2
Q ss_pred EEEEEecCcceEEEEEeEeCCeEEE
Q 036208 201 VLIFDLGGGTFDVSLLTIEEGIFEV 225 (279)
Q Consensus 201 vlvvDiG~gttd~sv~~~~~~~~~~ 225 (279)
+.++|+|..++-+.+++..++.++.
T Consensus 2 ~AvIDiGSNsirl~I~~~~~~~~~~ 26 (300)
T TIGR03706 2 IAAIDIGSNSVRLVIARGVEGSLQV 26 (300)
T ss_pred eEEEEecCCeeeEEEEEecCCcEEE
Confidence 5799999999999999986544433
No 180
>PRK09698 D-allose kinase; Provisional
Probab=42.58 E-value=1.5e+02 Score=24.68 Aligned_cols=26 Identities=31% Similarity=0.474 Sum_probs=21.6
Q ss_pred CeEEEEEEecCcceEEEEEeEeCCeE
Q 036208 198 EKNVLIFDLGGGTFDVSLLTIEEGIF 223 (279)
Q Consensus 198 ~~~vlvvDiG~gttd~sv~~~~~~~~ 223 (279)
...++.+|+|+..+.++++.+....+
T Consensus 3 ~~~~lgidig~t~i~~~l~d~~g~i~ 28 (302)
T PRK09698 3 KNVVLGIDMGGTHIRFCLVDAEGEIL 28 (302)
T ss_pred ccEEEEEEcCCcEEEEEEEcCCCCEE
Confidence 45789999999999999998866543
No 181
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=42.30 E-value=34 Score=29.19 Aligned_cols=27 Identities=15% Similarity=0.069 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCcceEEEEEeCCceEEE
Q 036208 6 EGPAIGIDLGTTYSCVGVWQHDRVEII 32 (279)
Q Consensus 6 ~~~vvGID~Gt~~t~v~~~~~~~~~~v 32 (279)
.+.+|.+|.|+|.+.++...+|.|..-
T Consensus 127 ~~~~I~~DmGGTTtDi~~i~~G~p~~~ 153 (318)
T TIGR03123 127 IPECLFVDMGSTTTDIIPIIDGEVAAK 153 (318)
T ss_pred CCCEEEEEcCccceeeEEecCCEeeee
Confidence 345999999999999999999987665
No 182
>PTZ00288 glucokinase 1; Provisional
Probab=41.81 E-value=2.5e+02 Score=24.95 Aligned_cols=23 Identities=17% Similarity=0.134 Sum_probs=20.2
Q ss_pred CCeEEEEEEecCcceEEEEEeEe
Q 036208 197 GEKNVLIFDLGGGTFDVSLLTIE 219 (279)
Q Consensus 197 ~~~~vlvvDiG~gttd~sv~~~~ 219 (279)
....++.+|+||..+-+.+++..
T Consensus 24 ~~~~~~~~DiGgt~~R~~~~~~~ 46 (405)
T PTZ00288 24 SGPIFVGCDVGGTNARVGFAREV 46 (405)
T ss_pred cCCeEEEEEecCCceEEEEEecc
Confidence 45678999999999999999984
No 183
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=41.10 E-value=34 Score=28.06 Aligned_cols=20 Identities=20% Similarity=0.406 Sum_probs=17.4
Q ss_pred EEEEEcCCcceEEEEEeCCc
Q 036208 9 AIGIDLGTTYSCVGVWQHDR 28 (279)
Q Consensus 9 vvGID~Gt~~t~v~~~~~~~ 28 (279)
.+.||+|.|+++.++++++.
T Consensus 2 ~L~iDiGNT~~~~a~~~~~~ 21 (251)
T COG1521 2 LLLIDIGNTRIVFALYEGGK 21 (251)
T ss_pred eEEEEeCCCeEEEEEecCCe
Confidence 68999999999999987554
No 184
>PRK00976 hypothetical protein; Provisional
Probab=40.38 E-value=42 Score=28.71 Aligned_cols=21 Identities=29% Similarity=0.325 Sum_probs=17.7
Q ss_pred CEEEEEcCCcceEEEEEeCCc
Q 036208 8 PAIGIDLGTTYSCVGVWQHDR 28 (279)
Q Consensus 8 ~vvGID~Gt~~t~v~~~~~~~ 28 (279)
.+||||-|||-++.|..+++.
T Consensus 2 ~~~g~dhgt~~~~~~~~~~~~ 22 (326)
T PRK00976 2 MFVGIDHGTTGIRFAIIEGGK 22 (326)
T ss_pred eEEeecCCCccEEEEEEcCCc
Confidence 589999999999999984444
No 185
>PLN02405 hexokinase
Probab=39.91 E-value=1.3e+02 Score=27.47 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=22.6
Q ss_pred CCCeEEEEEEecCcceEEEEEeEeC
Q 036208 196 TGEKNVLIFDLGGGTFDVSLLTIEE 220 (279)
Q Consensus 196 ~~~~~vlvvDiG~gttd~sv~~~~~ 220 (279)
.+.+.++.+|+||.++-+..+++.+
T Consensus 92 ~E~G~flAlDlGGTNfRV~~V~L~g 116 (497)
T PLN02405 92 DEKGLFYALDLGGTNFRVLRVLLGG 116 (497)
T ss_pred CcceeEEEEecCCceEEEEEEEEcC
Confidence 4577999999999999999999986
No 186
>PLN00130 succinate dehydrogenase (SDH3); Provisional
Probab=39.85 E-value=3.3 Score=31.51 Aligned_cols=21 Identities=19% Similarity=0.264 Sum_probs=16.9
Q ss_pred CCEEEEEcCCcceEEEEEeCC
Q 036208 7 GPAIGIDLGTTYSCVGVWQHD 27 (279)
Q Consensus 7 ~~vvGID~Gt~~t~v~~~~~~ 27 (279)
.-++|+|+||+|+.++..++.
T Consensus 57 ~d~~g~~~gt~n~~~~~~e~~ 77 (213)
T PLN00130 57 NDILGTGLGTNNAIREEREKS 77 (213)
T ss_pred cceeccCCCcchHHHHHHhcc
Confidence 448999999999988776543
No 187
>PRK10854 exopolyphosphatase; Provisional
Probab=39.85 E-value=61 Score=29.78 Aligned_cols=34 Identities=18% Similarity=0.420 Sum_probs=27.6
Q ss_pred CCCCeEEEEEEecCcceEEEEEeEeCCeEEEEEE
Q 036208 195 STGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKAT 228 (279)
Q Consensus 195 ~~~~~~vlvvDiG~gttd~sv~~~~~~~~~~~~~ 228 (279)
.+.+..+.++|+|..++-+.|++..++.++.+..
T Consensus 7 ~~~~~~~A~IDIGSNSirL~I~e~~~~~~~~i~~ 40 (513)
T PRK10854 7 SPRPQEFAAVDLGSNSFHMVIARVVDGAMQIIGR 40 (513)
T ss_pred CCCCCEEEEEEeccchheEEEEEecCCcEEEeee
Confidence 4567789999999999999999988765555543
No 188
>PRK12408 glucokinase; Provisional
Probab=39.69 E-value=41 Score=28.88 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=20.7
Q ss_pred CCCeEEEEEEecCcceEEEEEeEeC
Q 036208 196 TGEKNVLIFDLGGGTFDVSLLTIEE 220 (279)
Q Consensus 196 ~~~~~vlvvDiG~gttd~sv~~~~~ 220 (279)
.+...+|.+|+||..+-+++++-..
T Consensus 13 ~~~~~~L~~DIGGT~i~~al~d~~g 37 (336)
T PRK12408 13 PRPESFVAADVGGTHVRVALVCASP 37 (336)
T ss_pred cccccEEEEEcChhhhheeEEeccC
Confidence 4566799999999999999997543
No 189
>TIGR03829 YokU_near_AblA uncharacterized protein, YokU family. Members of this protein family occur in various species of the genus Bacillus, always next to the gene (kamA or ablA) for lysine 2,3-aminomutase. Members have a pair of CXXC motifs, and share homology to the amino-terminal region of a family of putative transcription factors for which the C-terminal is modeled by pfam01381, a helix-turn-helix domain model. This family, however, is shorter and lacks the helix-turn-helix region. The function of this protein family is unknown, but a regulatory role in compatible solute biosynthesis is suggested by local genome context.
Probab=39.68 E-value=1e+02 Score=20.83 Aligned_cols=74 Identities=16% Similarity=0.209 Sum_probs=48.8
Q ss_pred CCeEEEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCCchhHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhh
Q 036208 197 GEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERA 276 (279)
Q Consensus 197 ~~~~vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~a 276 (279)
.+.+...+|.+.|+.-+-+-.+.. -....+|=..+|..+.+-|.++|---+.+.+ .+.-.+..||+.=+.+
T Consensus 12 ~~~tTv~~el~~G~~~IvIknVPa--------~~C~~CGe~y~~dev~~eIE~~l~l~~~~~~-p~~~~y~~lm~~~~~l 82 (89)
T TIGR03829 12 ARTTTVYWELPDGTKAIEIKETPS--------ISCSHCGMEYQDDTTVKEIEDQLLLVDTKKL-PDETTYEELMKMPRLL 82 (89)
T ss_pred cceEEEEEEecCCceEEEEecCCc--------ccccCCCcEeecHHHHHHHHhhhEEeecccC-CccccHHHHhhcHHHH
Confidence 445667777777765444333222 3457899999999999998887765443333 2345788888888888
Q ss_pred hcC
Q 036208 277 KRT 279 (279)
Q Consensus 277 K~~ 279 (279)
|+.
T Consensus 83 k~n 85 (89)
T TIGR03829 83 KRN 85 (89)
T ss_pred hhc
Confidence 863
No 190
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=39.24 E-value=40 Score=32.03 Aligned_cols=26 Identities=31% Similarity=0.298 Sum_probs=23.6
Q ss_pred CEEEEEcCCcceEEEEEeCCceEEEe
Q 036208 8 PAIGIDLGTTYSCVGVWQHDRVEIIA 33 (279)
Q Consensus 8 ~vvGID~Gt~~t~v~~~~~~~~~~v~ 33 (279)
.+|++|.|.|.|.++...+|.|++..
T Consensus 279 ~~i~~DmGGTStDva~i~~G~pe~~~ 304 (674)
T COG0145 279 NAIVFDMGGTSTDVALIIDGEPEISS 304 (674)
T ss_pred CEEEEEcCCcceeeeeeecCcEEeec
Confidence 49999999999999999999888765
No 191
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=38.47 E-value=1.4e+02 Score=23.97 Aligned_cols=52 Identities=25% Similarity=0.303 Sum_probs=39.3
Q ss_pred ceeeEeHHHHHHHHHHHHHHHHHHHhCCcccceEEeeCCCCCHHHHHHHHHHHHHcCCc
Q 036208 114 EEKQFSAEEISSMVLNKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQATKDAGVISGLN 172 (279)
Q Consensus 114 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~isvP~~~~~~~r~~l~~a~~~ag~~ 172 (279)
.++.++.++++.. .+..+..+ +...+++|||-...-.++..|-.-++.+|.+
T Consensus 96 qGr~f~a~eVL~L-----t~~tR~LL--P~~~LsVTVPHiL~ld~Qv~LA~~L~~~GaD 147 (242)
T PF04481_consen 96 QGRRFSAEEVLAL-----TRETRSLL--PDITLSVTVPHILPLDQQVQLAEDLVKAGAD 147 (242)
T ss_pred cCCeecHHHHHHH-----HHHHHHhC--CCCceEEecCccccHHHHHHHHHHHHHhCCc
Confidence 5667888887653 34444444 3358999999999999999999999999874
No 192
>COG3513 Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]
Probab=37.84 E-value=32 Score=33.01 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=19.6
Q ss_pred CCCCEEEEEcCCcceEEEEEeCC
Q 036208 5 GEGPAIGIDLGTTYSCVGVWQHD 27 (279)
Q Consensus 5 ~~~~vvGID~Gt~~t~v~~~~~~ 27 (279)
+...++|+|+|+.....|+.+++
T Consensus 2 ~~~yilglDIGi~SVGWAvve~d 24 (1088)
T COG3513 2 KKAYILGLDIGINSVGWAVVEDD 24 (1088)
T ss_pred CcceEEEeeccccceeeEEeecc
Confidence 45789999999999999998544
No 193
>COG3734 DgoK 2-keto-3-deoxy-galactonokinase [Carbohydrate transport and metabolism]
Probab=37.72 E-value=71 Score=26.72 Aligned_cols=23 Identities=35% Similarity=0.257 Sum_probs=19.5
Q ss_pred CCCEEEEEcCCcceEEEEEeCCc
Q 036208 6 EGPAIGIDLGTTYSCVGVWQHDR 28 (279)
Q Consensus 6 ~~~vvGID~Gt~~t~v~~~~~~~ 28 (279)
.+.++.||-|||+.++-.+..++
T Consensus 4 ~~~~i~iDWGTT~~R~wL~~~dg 26 (306)
T COG3734 4 EPAYIAIDWGTTNLRAWLVRGDG 26 (306)
T ss_pred CceEEEEecCCccEEEEEEcCCc
Confidence 56799999999999999885554
No 194
>PF04723 GRDA: Glycine reductase complex selenoprotein A; InterPro: IPR006812 Found in clostridia, this protein contains one active site selenocysteine and catalyses the reductive deamination of glycine, which is coupled to the esterification of orthophosphate resulting in the formation of ATP []. A member of this family may also exist in Treponema denticola [].; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=37.40 E-value=91 Score=22.87 Aligned_cols=44 Identities=23% Similarity=0.219 Sum_probs=34.2
Q ss_pred eEEeeCCCCCHHHHHHHHHHHHHcCCceeeee---cchhHHHHHhhh
Q 036208 146 AVVTVPAYFNDSQRQATKDAGVISGLNVMRII---NEPTAAAIAYGL 189 (279)
Q Consensus 146 ~~isvP~~~~~~~r~~l~~a~~~ag~~~~~~i---~e~~Aaa~~~~~ 189 (279)
++.|--...+.+.+++++++++..|-+++.++ .|++++.++.-.
T Consensus 41 FVctaagaMDLEnQ~rvk~~aEk~g~enlvVvlG~aeaE~a~laAET 87 (150)
T PF04723_consen 41 FVCTAAGAMDLENQQRVKDLAEKYGAENLVVVLGAAEAEAAGLAAET 87 (150)
T ss_pred EEecccccccHHHHHHHHHHHHhcCCccEEEEecCCChhhhhhhhhh
Confidence 34555667788999999999999999886666 488888886644
No 195
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=36.76 E-value=4.5e+02 Score=26.33 Aligned_cols=91 Identities=9% Similarity=0.001 Sum_probs=46.5
Q ss_pred EeHHHHHHHHHHHHHHH----HHHHhCCcccceEEeeCCCCCHHHHHHHHHHHHHc---CCce-eeeecchhHHHHHhhh
Q 036208 118 FSAEEISSMVLNKMKEI----AEAYLGTTIKNAVVTVPAYFNDSQRQATKDAGVIS---GLNV-MRIINEPTAAAIAYGL 189 (279)
Q Consensus 118 ~~~~~~~~~~l~~l~~~----~~~~~~~~~~~~~isvP~~~~~~~r~~l~~a~~~a---g~~~-~~~i~e~~Aaa~~~~~ 189 (279)
.+..+++...|+.+... +-.+.......+=++.+...+.++.+.+.+.+... +++. ...++..+|...+-..
T Consensus 597 HTAtHLL~~alr~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~~vN~~I~~n~pV~~~~~~~~eA~~~~~~~ 676 (902)
T TIGR03683 597 HTATHVLLAAARRVLGRHVWQAGAQKDTDKARLDITHYKRISEEEIKEIERLANRIVMENRPVSVKWMDRNEAEQKYGFR 676 (902)
T ss_pred HHHHHHHHHHHHHHhCCceeecCccccCCcEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEeCHHHHHhcCchh
Confidence 46677777777665431 11112223335566777778888877776665544 4443 3444444444332111
Q ss_pred ccCCCCCCCeEEEEEEecC
Q 036208 190 DKKAGSTGEKNVLIFDLGG 208 (279)
Q Consensus 190 ~~~~~~~~~~~vlvvDiG~ 208 (279)
........+..+=||.||+
T Consensus 677 l~~~~~~~~~~VRVV~Ig~ 695 (902)
T TIGR03683 677 LYQGGVPPGREIRVVEIED 695 (902)
T ss_pred hhccCCCCCCeEEEEEECC
Confidence 1111112345677888876
No 196
>PF01385 OrfB_IS605: Probable transposase; InterPro: IPR001959 This entry represents a conserved region of a probable transposase family, which is found in a number of uncharacterised bacterial proteins. A novel insertion sequence (IS)-like element of the Bacillus PS3 (Thermophilic bacterium PS-3) that promotes expression of the alanine carrier protein-encoding gene belongs to this entry, including IS891 [], IS1136 [], and IS1341 []. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=35.76 E-value=22 Score=28.16 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=17.8
Q ss_pred CCCCEEEEEcCCcceEEEEEeCC
Q 036208 5 GEGPAIGIDLGTTYSCVGVWQHD 27 (279)
Q Consensus 5 ~~~~vvGID~Gt~~t~v~~~~~~ 27 (279)
+...++|||+|..+..++...++
T Consensus 122 ~~~~~vgVDlGi~~~a~~~~~~~ 144 (227)
T PF01385_consen 122 DTEKVVGVDLGIKNLATVSSGDG 144 (227)
T ss_pred ccceeeeeccccceeeccccccc
Confidence 45679999999999887765444
No 197
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=35.17 E-value=1.9e+02 Score=23.96 Aligned_cols=50 Identities=14% Similarity=0.201 Sum_probs=30.0
Q ss_pred EEEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCCchhHHHHHHHHHHHH
Q 036208 200 NVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQ 249 (279)
Q Consensus 200 ~vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~ 249 (279)
.++.+|+|+..+.+.++.+....+..........-....+-..+.+.+.+
T Consensus 2 ~~lgvdig~~~i~~~l~dl~g~i~~~~~~~~~~~~~~~~~~~~i~~~i~~ 51 (291)
T PRK05082 2 TTLAIDIGGTKIAAALVGEDGQIRQRRQIPTPASQTPEALRQALSALVSP 51 (291)
T ss_pred cEEEEEECCCEEEEEEEcCCCcEEEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 37899999999999999987643322222221112334455555555543
No 198
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=33.90 E-value=1.2e+02 Score=27.13 Aligned_cols=141 Identities=14% Similarity=0.151 Sum_probs=73.4
Q ss_pred EeHHHHHHHHHHHHHHHHHHHhCCcccceEEeeCCCCCHH-----HHHHHHHHHHHc--CCceeeeecchhHHHHHhhhc
Q 036208 118 FSAEEISSMVLNKMKEIAEAYLGTTIKNAVVTVPAYFNDS-----QRQATKDAGVIS--GLNVMRIINEPTAAAIAYGLD 190 (279)
Q Consensus 118 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~isvP~~~~~~-----~r~~l~~a~~~a--g~~~~~~i~e~~Aaa~~~~~~ 190 (279)
+...++-..-+.++.+.+... -++..+-+.+|.|.... -++.+.++++.. ++..++ +-..++-.+...
T Consensus 215 vnc~~l~~~DI~~Il~~vLyE--FPV~Ei~~~lP~Wve~L~~~Hwlk~~~~~~i~~~~~~i~~ir---Di~~~~~~~~~~ 289 (492)
T PF09547_consen 215 VNCEQLREEDITRILEEVLYE--FPVSEININLPKWVEMLEDDHWLKQSFIEAIKESLQDISKIR---DIDKIVDQLSEC 289 (492)
T ss_pred eehHHcCHHHHHHHHHHHHhc--CCceEEEeecchHHhhcCCCchHHHHHHHHHHHHHHhccHHh---hHHHHHhhcccc
Confidence 456666666677777766543 34558899999443321 244444443322 222211 111111111100
Q ss_pred cCCCCCCCeEEEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCCchhHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHH
Q 036208 191 KKAGSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLR 270 (279)
Q Consensus 191 ~~~~~~~~~~vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~ 270 (279)
+ .-....+-=+|+|.|+..+.+---..-.+++++.-.+..+.|.+ .|...+++.-.. ++.+.++.
T Consensus 290 -e--~i~~~~l~~idlg~G~a~i~i~~~~~lyy~vLsE~~G~~I~~e~---~Li~~~kela~~---------K~eYdkv~ 354 (492)
T PF09547_consen 290 -E--YIEKVKLEEIDLGTGSARIDIEVKEGLYYEVLSEITGLEIEGEY---DLIRLMKELAKA---------KKEYDKVA 354 (492)
T ss_pred -c--hhhhcceeeEECCCcEEEEEEEcChhHHHHHHHHHhCCCcCCHH---HHHHHHHHHHHH---------HHHHHHHH
Confidence 0 11345566799999998877654444455556555555555543 444444433222 45667777
Q ss_pred HHHHhhhc
Q 036208 271 TACERAKR 278 (279)
Q Consensus 271 ~~~~~aK~ 278 (279)
.+.+.+|.
T Consensus 355 ~Al~~Vk~ 362 (492)
T PF09547_consen 355 DALEEVKE 362 (492)
T ss_pred HHHHHHHH
Confidence 77766664
No 199
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=33.28 E-value=48 Score=27.07 Aligned_cols=39 Identities=26% Similarity=0.232 Sum_probs=25.3
Q ss_pred cCCceeeeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcc
Q 036208 169 SGLNVMRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGT 210 (279)
Q Consensus 169 ag~~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gt 210 (279)
.+++ +.+-.+..|+|++..+... ......++++-+|.|-
T Consensus 96 ~~~p-V~leNDanaaAlaE~~~g~--~~~~~~~v~i~lgtGi 134 (256)
T PRK13311 96 IQRE-VRIDNDANCFALSEAWDPE--FRTYPTVLGLILGTGV 134 (256)
T ss_pred HCCC-EEEEchhhHHHHHHHHhcC--CCCCCcEEEEEECcCe
Confidence 3654 6778888888887665433 2245677777777543
No 200
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=33.04 E-value=88 Score=24.11 Aligned_cols=30 Identities=17% Similarity=0.364 Sum_probs=24.7
Q ss_pred EEEEEecCcceEEEEEeEeC-CeEEEEEEeC
Q 036208 201 VLIFDLGGGTFDVSLLTIEE-GIFEVKATAG 230 (279)
Q Consensus 201 vlvvDiG~gttd~sv~~~~~-~~~~~~~~~~ 230 (279)
++.+|+|.+++-+.+.+..+ +.+++++...
T Consensus 1 ~~~lDIGs~~ik~vv~~~~~~~~~~i~g~~~ 31 (187)
T smart00842 1 IVGLDIGTSKIKALVAEVDEDGEINVIGVGE 31 (187)
T ss_pred CEEEEeccceEEEEEEEEcCCCCEEEEEEEE
Confidence 36799999999999999874 5788887764
No 201
>PF14239 RRXRR: RRXRR protein
Probab=32.35 E-value=69 Score=24.67 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=19.2
Q ss_pred CCCEEEEEcCCcceEEEEEeCC
Q 036208 6 EGPAIGIDLGTTYSCVGVWQHD 27 (279)
Q Consensus 6 ~~~vvGID~Gt~~t~v~~~~~~ 27 (279)
.+..+|||=|+.++.+|+..+.
T Consensus 50 qpi~lgiDpGsk~tGiav~~~~ 71 (176)
T PF14239_consen 50 QPIRLGIDPGSKTTGIAVVSEK 71 (176)
T ss_pred cCEEEEECCCCCeEEEEEEeCC
Confidence 4679999999999999998666
No 202
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=31.99 E-value=2.4e+02 Score=22.93 Aligned_cols=47 Identities=11% Similarity=0.052 Sum_probs=28.2
Q ss_pred EEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCCchhHHHHHHHHHHH
Q 036208 201 VLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFV 248 (279)
Q Consensus 201 vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~ 248 (279)
++.+|+|+..+.++++......+....... .......+-..+.+++.
T Consensus 2 ~lgidiggt~i~~~l~d~~g~i~~~~~~~~-~~~~~~~~~~~i~~~i~ 48 (256)
T PRK13311 2 YYGFDMGGTKIELGVFDENLQRIWHKRVPT-PREDYPQLLQILRDLTE 48 (256)
T ss_pred EEEEEECCCcEEEEEECCCCCEEEEEEecC-CCcCHHHHHHHHHHHHH
Confidence 588999999999999987765443322222 22233344444444443
No 203
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=31.67 E-value=1.2e+02 Score=27.24 Aligned_cols=142 Identities=10% Similarity=0.136 Sum_probs=75.9
Q ss_pred eEeHHHHHHHHHHHHHHHHHHHhCCcccceEEeeCCCCCHH-----HHHHHHHHHHHc--CCceeeeecchhHHHHHhhh
Q 036208 117 QFSAEEISSMVLNKMKEIAEAYLGTTIKNAVVTVPAYFNDS-----QRQATKDAGVIS--GLNVMRIINEPTAAAIAYGL 189 (279)
Q Consensus 117 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~isvP~~~~~~-----~r~~l~~a~~~a--g~~~~~~i~e~~Aaa~~~~~ 189 (279)
.++..++-..-+..+.+.+...+ ++..+-+.+|.+.... -++.+.++++.. ++..++=+ ..+.-.+.
T Consensus 214 ~v~c~~l~~~DI~~il~~vL~EF--Pv~Ei~~~~P~Wve~L~~~Hwlk~~~~~~i~~~~~~i~~irDv---~~~~~~~~- 287 (492)
T TIGR02836 214 AMDVESMRESDILSVLEEVLYEF--PILEINIDLPSWVEVLDENHWLKENFQSSVKETVKDVYRLRDV---DNVVGQLK- 287 (492)
T ss_pred EEEHHHcCHHHHHHHHHHHHhcC--CceEEEeeCchHHHhcCCCchHHHHHHHHHHHHHHhhhHHhhH---Hhhhcccc-
Confidence 34566666666666666665433 4458888899443321 133333333322 11111111 11110000
Q ss_pred ccCCCCCCCeEEEEEEecCcceEEEEEeEeCCeEEEEEEeCCCCCchhHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHH
Q 036208 190 DKKAGSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRL 269 (279)
Q Consensus 190 ~~~~~~~~~~~vlvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l 269 (279)
....-....+-=+|+|.|+..+.+---..-.+++++...+..+.|.+ .|...+.+.-.. ++.+.++
T Consensus 288 --~~e~i~~~~l~~i~lg~G~~~i~~~~~~~lyy~iLsE~~G~~I~~e~---~L~~~~~ela~~---------K~eydkv 353 (492)
T TIGR02836 288 --ENEFIESVGLAGIEMGEGVAEIDLYAKEGLFYKILKEVSGVEIRGED---HLMELMKDLAHA---------KTEYDKI 353 (492)
T ss_pred --ccchhhhheeeeEecCCcEEEEEEEcChhHHHHHHHHHhCCCcCCHH---HHHHHHHHHHHH---------HHHHHHH
Confidence 00112345667899999998888765555566666666666776653 445555433322 5567777
Q ss_pred HHHHHhhhc
Q 036208 270 RTACERAKR 278 (279)
Q Consensus 270 ~~~~~~aK~ 278 (279)
..+.+.+|.
T Consensus 354 ~~Al~~Vk~ 362 (492)
T TIGR02836 354 SDALKMVKE 362 (492)
T ss_pred HHHHHHHHH
Confidence 777777764
No 204
>PRK13322 pantothenate kinase; Reviewed
Probab=30.99 E-value=55 Score=26.76 Aligned_cols=18 Identities=17% Similarity=0.172 Sum_probs=16.5
Q ss_pred EEEEEcCCcceEEEEEeC
Q 036208 9 AIGIDLGTTYSCVGVWQH 26 (279)
Q Consensus 9 vvGID~Gt~~t~v~~~~~ 26 (279)
++-||.|.|+++.+++++
T Consensus 2 ~L~IDiGNT~iK~~l~~~ 19 (246)
T PRK13322 2 ILELDCGNSRLKWRVIDN 19 (246)
T ss_pred EEEEEeCCCcEEEEEEcC
Confidence 789999999999999875
No 205
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=30.81 E-value=1e+02 Score=26.08 Aligned_cols=45 Identities=18% Similarity=0.175 Sum_probs=25.8
Q ss_pred EEEEecCcceEEEEEeEeCCeEEEEEEeCCCCCchhHHHHHHHHHHH
Q 036208 202 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFV 248 (279)
Q Consensus 202 lvvDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~ 248 (279)
|++|+||..+-++++.-....+.......... -..+...+.+++.
T Consensus 1 l~~DIGGT~i~~glvd~~g~~l~~~~~~~~~~--~~~l~~~i~~~l~ 45 (316)
T TIGR00749 1 LVGDIGGTNARLALCEIAPGEISQAKTYSGLD--FPSLEAVVRVYLE 45 (316)
T ss_pred CeEecCcceeeEEEEecCCCceeeeEEEecCC--CCCHHHHHHHHHH
Confidence 58999999999999975443322222211111 2445555555554
No 206
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=30.78 E-value=2.2e+02 Score=23.57 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=21.1
Q ss_pred EEEEEecCcceEEEEEeEeCCeEEEEEEe
Q 036208 201 VLIFDLGGGTFDVSLLTIEEGIFEVKATA 229 (279)
Q Consensus 201 vlvvDiG~gttd~sv~~~~~~~~~~~~~~ 229 (279)
++-+|+|+.|+.+.+++-.+.....+...
T Consensus 3 ~~GIDiGStttK~Vlid~~~~~~~~~~~~ 31 (262)
T TIGR02261 3 TAGIDIGTGAIKTVLFEVDGDKEECLAKR 31 (262)
T ss_pred EEEEEcCcccEEEEEEecCCCeeEEEEEE
Confidence 57799999999999998544444444443
No 207
>smart00393 R3H Putative single-stranded nucleic acids-binding domain.
Probab=30.61 E-value=1.5e+02 Score=19.10 Aligned_cols=28 Identities=21% Similarity=0.372 Sum_probs=24.2
Q ss_pred ceEEeeCCCCCHHHHHHHHHHHHHcCCce
Q 036208 145 NAVVTVPAYFNDSQRQATKDAGVISGLNV 173 (279)
Q Consensus 145 ~~~isvP~~~~~~~r~~l~~a~~~ag~~~ 173 (279)
...+..|+ ++..+|+.+.+.+...|+..
T Consensus 36 ~~~~~~~p-m~~~~R~~iH~~a~~~~l~s 63 (79)
T smart00393 36 KESVELPP-MNSYERKIVHELAEKYGLES 63 (79)
T ss_pred CCeEEcCC-CCHHHHHHHHHHHHHcCCEE
Confidence 55688887 99999999999999988864
No 208
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=30.05 E-value=1.1e+02 Score=22.51 Aligned_cols=25 Identities=24% Similarity=0.145 Sum_probs=17.6
Q ss_pred CCCCEEEEEcCCcceEEEEEeCCce
Q 036208 5 GEGPAIGIDLGTTYSCVGVWQHDRV 29 (279)
Q Consensus 5 ~~~~vvGID~Gt~~t~v~~~~~~~~ 29 (279)
....|||||=|++.=.+++-=+|.+
T Consensus 30 ~~~lIVGiDPG~ttgiAildL~G~~ 54 (138)
T PF04312_consen 30 RRYLIVGIDPGTTTGIAILDLDGEL 54 (138)
T ss_pred CCCEEEEECCCceeEEEEEecCCcE
Confidence 4568999999998655555445544
No 209
>PRK14878 UGMP family protein; Provisional
Probab=30.01 E-value=3.5e+02 Score=23.08 Aligned_cols=88 Identities=15% Similarity=0.106 Sum_probs=45.2
Q ss_pred cccceEEee-CCCCCHHHHHH---HHHHHHHcCCceeeeecc--hhHHHHHhhhccCCCCCCCeEEEEEEecCcceEEEE
Q 036208 142 TIKNAVVTV-PAYFNDSQRQA---TKDAGVISGLNVMRIINE--PTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVSL 215 (279)
Q Consensus 142 ~~~~~~isv-P~~~~~~~r~~---l~~a~~~ag~~~~~~i~e--~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd~sv 215 (279)
.++.++++. |..++ .-|-. -+..+...+++. ..++- ..|++.++. .. .... -+|++|= |+|.+..
T Consensus 65 did~Iavt~gPG~~~-~lrvg~~~Ak~la~~~~~p~-~~v~h~~~Ha~sa~~~--s~--~~~~-l~l~vsG--g~t~i~~ 135 (323)
T PRK14878 65 DIDAVAVSQGPGLGP-ALRVGATAARALALKYNKPL-VPVNHCIAHIEIGRLT--TG--AKDP-VVLYVSG--GNTQVLA 135 (323)
T ss_pred HCCEEEEecCCCccc-chHHHHHHHHHHHHHhCCCc-cccchHHHHHHhhhhc--CC--CCCC-EEEEEEc--CCeEEEE
Confidence 456778877 54444 33322 344455556553 33333 333333232 11 1122 6677774 4777766
Q ss_pred EeEeCCeEEEEEEeCCCCCchhHHHH
Q 036208 216 LTIEEGIFEVKATAGDTHLGGEDFDN 241 (279)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~Gg~~id~ 241 (279)
++ .+.++++.... ..--|+-+|.
T Consensus 136 ~~--~~~~~~~~~t~-d~s~Gr~fD~ 158 (323)
T PRK14878 136 FR--GGRYRVFGETL-DIAIGNALDT 158 (323)
T ss_pred Ee--CCeEEEeeeec-CcchhHHHHH
Confidence 66 55688887743 4444566654
No 210
>PF12237 PCIF1_WW: Phosphorylated CTD interacting factor 1 WW domain; InterPro: IPR022035 This domain is found in bacteria and eukaryotes, and is approximately 180 amino acids in length. It is the WW domain of PCIF1. PCIF1 interacts with phosphorylated RNA polymerase II carboxy-terminal domain (CTD). The WW domain of PCIF1 can directly and preferentially bind to the phosphorylated CTD compared to the unphosphorylated CTD. PCIF1 binds to the hyperphosphorylated RNAP II (RNAP IIO) in vitro and in vivo. Double immunofluorescence labeling in HeLa cells demonstrated that PCIF1 and endogenous RNAP IIO are co-localized in the cell nucleus. Thus, PCIF1 may play a role in mRNA synthesis by modulating RNAP IIO activity.
Probab=29.98 E-value=1.4e+02 Score=23.13 Aligned_cols=44 Identities=18% Similarity=0.251 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcccceEEeeCCCCCHHHHHHHH
Q 036208 120 AEEISSMVLNKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQATK 163 (279)
Q Consensus 120 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~isvP~~~~~~~r~~l~ 163 (279)
.++++....+++.......-...+...++-+|.+.+...-+.|.
T Consensus 112 ~~elm~~~~~h~~~~L~~~~~~~~LsFvvvvP~w~~~~~~~~l~ 155 (176)
T PF12237_consen 112 DEELMERMVNHIERLLRAENSSEPLSFVVVVPEWRDPPAWERLE 155 (176)
T ss_pred CHHHHHHHHHHHHHHHHhccccCceEEEEEecCCCCcHHHHHHh
Confidence 46677777777766662222445568899999776666644443
No 211
>PRK03011 butyrate kinase; Provisional
Probab=29.77 E-value=66 Score=27.98 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=19.3
Q ss_pred CEEEEEcCCcceEEEEEeCCce
Q 036208 8 PAIGIDLGTTYSCVGVWQHDRV 29 (279)
Q Consensus 8 ~vvGID~Gt~~t~v~~~~~~~~ 29 (279)
.|+.|.-|+|.|+++++++..+
T Consensus 3 ~il~inpgststk~a~~~~~~~ 24 (358)
T PRK03011 3 RILVINPGSTSTKIAVFEDEKP 24 (358)
T ss_pred EEEEEcCCCchheEEEEcCCce
Confidence 5899999999999999976654
No 212
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=29.48 E-value=1.6e+02 Score=24.11 Aligned_cols=20 Identities=25% Similarity=0.235 Sum_probs=16.9
Q ss_pred EEEEecCcceEEEEEeEeCC
Q 036208 202 LIFDLGGGTFDVSLLTIEEG 221 (279)
Q Consensus 202 lvvDiG~gttd~sv~~~~~~ 221 (279)
|=||.||++|.+.++.....
T Consensus 1 lGIDgGgTkt~~vl~d~~g~ 20 (271)
T PF01869_consen 1 LGIDGGGTKTKAVLVDENGN 20 (271)
T ss_dssp EEEEECSSEEEEEEEETTSE
T ss_pred CEEeeChheeeeEEEeCCCC
Confidence 45899999999999987664
No 213
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=28.34 E-value=1.3e+02 Score=24.12 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=17.8
Q ss_pred EEEEEEecCcceEEEEEeEeC
Q 036208 200 NVLIFDLGGGTFDVSLLTIEE 220 (279)
Q Consensus 200 ~vlvvDiG~gttd~sv~~~~~ 220 (279)
.+|.+|+|.+++-+.++....
T Consensus 1 y~lgiDiGTts~K~~l~d~~g 21 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDEDG 21 (245)
T ss_dssp EEEEEEECSSEEEEEEEETTS
T ss_pred CEEEEEEcccceEEEEEeCCC
Confidence 378999999999999999433
No 214
>PRK00292 glk glucokinase; Provisional
Probab=28.33 E-value=1.8e+02 Score=24.60 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=19.2
Q ss_pred EEEEEEecCcceEEEEEeEeCCe
Q 036208 200 NVLIFDLGGGTFDVSLLTIEEGI 222 (279)
Q Consensus 200 ~vlvvDiG~gttd~sv~~~~~~~ 222 (279)
.++.+|+||..+.+.+++...+.
T Consensus 3 ~~lgiDIGgT~i~~~l~~~~~~~ 25 (316)
T PRK00292 3 PALVGDIGGTNARFALCDWANGE 25 (316)
T ss_pred eEEEEEcCccceEEEEEecCCCc
Confidence 47999999999999999865443
No 215
>PRK13329 pantothenate kinase; Reviewed
Probab=28.11 E-value=2.4e+02 Score=23.08 Aligned_cols=14 Identities=14% Similarity=0.278 Sum_probs=11.1
Q ss_pred CeEEEEEEecCcce
Q 036208 198 EKNVLIFDLGGGTF 211 (279)
Q Consensus 198 ~~~vlvvDiG~gtt 211 (279)
+..++|||+|--+|
T Consensus 118 ~~~~lViD~GTA~T 131 (249)
T PRK13329 118 ARPCLVVMVGTAVT 131 (249)
T ss_pred CCCEEEEECCCcee
Confidence 35799999997764
No 216
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=27.95 E-value=38 Score=28.60 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=17.0
Q ss_pred EEEEEcCCcceEEEEEeCCc
Q 036208 9 AIGIDLGTTYSCVGVWQHDR 28 (279)
Q Consensus 9 vvGID~Gt~~t~v~~~~~~~ 28 (279)
+||||-|||-++.|+..++.
T Consensus 1 ~vGiDHGTtgi~f~~~~~~~ 20 (326)
T TIGR03281 1 FVGIDHGTTGIRFAIIDGEK 20 (326)
T ss_pred CccccCCCccEEEEEecCCc
Confidence 48999999999999885554
No 217
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=27.07 E-value=3.5e+02 Score=22.12 Aligned_cols=19 Identities=26% Similarity=0.296 Sum_probs=16.5
Q ss_pred EEEEcCCcceEEEEEeCCc
Q 036208 10 IGIDLGTTYSCVGVWQHDR 28 (279)
Q Consensus 10 vGID~Gt~~t~v~~~~~~~ 28 (279)
||||-|.|.|++++.+.++
T Consensus 1 lGIDgGgTkt~~vl~d~~g 19 (271)
T PF01869_consen 1 LGIDGGGTKTKAVLVDENG 19 (271)
T ss_dssp EEEEECSSEEEEEEEETTS
T ss_pred CEEeeChheeeeEEEeCCC
Confidence 7999999999999886554
No 218
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=26.87 E-value=62 Score=26.06 Aligned_cols=38 Identities=24% Similarity=0.245 Sum_probs=26.5
Q ss_pred EEeeCCCCCHHHHHHHHHHHHHcCCceeeeecchhHHH
Q 036208 147 VVTVPAYFNDSQRQATKDAGVISGLNVMRIINEPTAAA 184 (279)
Q Consensus 147 ~isvP~~~~~~~r~~l~~a~~~ag~~~~~~i~e~~Aaa 184 (279)
.=++|...|-.|+++..-|-..|==+.+-+++||++|.
T Consensus 130 a~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSAL 167 (240)
T COG1126 130 ADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSAL 167 (240)
T ss_pred hhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccC
Confidence 44689999987777655443344335688999999873
No 219
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=26.48 E-value=1.5e+02 Score=26.75 Aligned_cols=51 Identities=12% Similarity=0.121 Sum_probs=35.9
Q ss_pred EEecCcceEEEEEeEeCCeEEEEEEeCCCCCchhHHHHHHHHHHHHHHHhhh
Q 036208 204 FDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKN 255 (279)
Q Consensus 204 vDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~~~~~~~ 255 (279)
+|||+.+|-++.|...+..+..++.......= .++..-|++...++++++.
T Consensus 1 ~DiGST~Tk~~a~~~~~~~~~~~~~~~tpTt~-~dv~~G~~~~a~~~l~~~~ 51 (463)
T TIGR01319 1 LDFGSTWTKAAAFDIEGDAILATAHDITPIES-DHLAGGFFNKANEKLNEDL 51 (463)
T ss_pred CCccccceEEEEEecCCCcEEEEEeccCccch-hhhhcchHHHHHHHHHHhc
Confidence 59999999999998888877777776542222 3666665666666666553
No 220
>PF10982 DUF2789: Protein of unknown function (DUF2789); InterPro: IPR021250 This bacterial family of proteins has no known function. ; PDB: 2KP6_A.
Probab=26.24 E-value=76 Score=20.54 Aligned_cols=23 Identities=13% Similarity=0.166 Sum_probs=15.4
Q ss_pred ceEEeeCCCCCHHHHHHHHHHHH
Q 036208 145 NAVVTVPAYFNDSQRQATKDAGV 167 (279)
Q Consensus 145 ~~~isvP~~~~~~~r~~l~~a~~ 167 (279)
.+.+.=-++|++.|+..|+++..
T Consensus 36 ~~~L~dApFWs~sQ~~FL~E~~~ 58 (74)
T PF10982_consen 36 DVHLADAPFWSPSQAAFLREALE 58 (74)
T ss_dssp TS-STT-TTS-HHHHHHHHHHHH
T ss_pred CCcccCCCCCCHHHHHHHHHHHH
Confidence 34444446999999999999864
No 221
>COG1710 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.98 E-value=2.2e+02 Score=20.35 Aligned_cols=32 Identities=16% Similarity=0.186 Sum_probs=22.6
Q ss_pred ceEEeeCCCCCHHHHHHHHHHHHHcCCceeee
Q 036208 145 NAVVTVPAYFNDSQRQATKDAGVISGLNVMRI 176 (279)
Q Consensus 145 ~~~isvP~~~~~~~r~~l~~a~~~ag~~~~~~ 176 (279)
.-+|..|..+.+..-+.+..|.++.|+..+.+
T Consensus 52 vK~Ig~P~s~y~k~skkvlkaleq~gI~vIPv 83 (139)
T COG1710 52 VKVIGCPPSLYPKVSKKVLKALEQMGIKVIPV 83 (139)
T ss_pred cceecCCchhhhHHHHHHHHHHHhCCceEeee
Confidence 44777887777766666666888888876543
No 222
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=25.82 E-value=75 Score=26.64 Aligned_cols=40 Identities=25% Similarity=0.261 Sum_probs=25.9
Q ss_pred HcCCceeeeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcc
Q 036208 168 ISGLNVMRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGT 210 (279)
Q Consensus 168 ~ag~~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gt 210 (279)
..+++ +.+..+..|+|++-.+... ......++++.+|.|-
T Consensus 95 ~~~~p-V~ieNDa~aaalaE~~~g~--~~~~~~~~~l~~gtGi 134 (303)
T PRK13310 95 RLGRD-VRLDNDANCFALSEAWDDE--FTQYPLVMGLILGTGV 134 (303)
T ss_pred HHCCC-eEEeccHhHHHHHHhhhcc--ccCCCcEEEEEecCce
Confidence 34665 6778888888887554332 1234678888888654
No 223
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=25.09 E-value=3.9e+02 Score=22.25 Aligned_cols=22 Identities=18% Similarity=0.440 Sum_probs=18.6
Q ss_pred EEEEEecCcceEEEEEeEeCCe
Q 036208 201 VLIFDLGGGTFDVSLLTIEEGI 222 (279)
Q Consensus 201 vlvvDiG~gttd~sv~~~~~~~ 222 (279)
++.+|+|+..+.++++......
T Consensus 2 ~lgidig~t~i~~~l~d~~g~i 23 (303)
T PRK13310 2 YYGFDIGGTKIELGVFNEKLEL 23 (303)
T ss_pred eEEEEeCCCcEEEEEECCCCcE
Confidence 5789999999999999876543
No 224
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=25.07 E-value=2.4e+02 Score=21.15 Aligned_cols=48 Identities=13% Similarity=0.297 Sum_probs=30.6
Q ss_pred EEecCcceEEEEEeEeCCeEEEEEEeCCCCCchhHHHHHHHHHHHHHHHh
Q 036208 204 FDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKR 253 (279)
Q Consensus 204 vDiG~gttd~sv~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~~~~~ 253 (279)
||+|+..+.+.++.+....+........ ..-..+-..+.+.+.+...+
T Consensus 2 idig~~~i~~~l~d~~g~ii~~~~~~~~--~~~~~~~~~l~~~i~~~~~~ 49 (179)
T PF00480_consen 2 IDIGGTSIRIALVDLDGEIIYSESIPTP--TSPEELLDALAELIERLLAD 49 (179)
T ss_dssp EEEESSEEEEEEEETTSCEEEEEEEEHH--SSHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCEEEEEEECCCCCEEEEEEEECC--CCHHHHHHHHHHHHHHHHhh
Confidence 7999999999999987765444333321 33445555566665554444
No 225
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=24.44 E-value=1.6e+02 Score=24.27 Aligned_cols=24 Identities=13% Similarity=0.271 Sum_probs=20.4
Q ss_pred CCCEEEEEcCCcceEEEEEeCCce
Q 036208 6 EGPAIGIDLGTTYSCVGVWQHDRV 29 (279)
Q Consensus 6 ~~~vvGID~Gt~~t~v~~~~~~~~ 29 (279)
..-++.||+|++.|.++...++++
T Consensus 166 ~~~~~~vniGN~HTlaa~v~~~rI 189 (254)
T PF08735_consen 166 REGIIVVNIGNGHTLAALVKDGRI 189 (254)
T ss_pred cCCeEEEEeCCccEEEEEEeCCEE
Confidence 346899999999999999888765
No 226
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=24.33 E-value=1.6e+02 Score=26.90 Aligned_cols=26 Identities=31% Similarity=0.615 Sum_probs=21.1
Q ss_pred eEEEEEEecCcceEEEEEeEeCCeEE
Q 036208 199 KNVLIFDLGGGTFDVSLLTIEEGIFE 224 (279)
Q Consensus 199 ~~vlvvDiG~gttd~sv~~~~~~~~~ 224 (279)
..+.++|+|.-++-+.|++..++.+.
T Consensus 3 ~~~A~IDiGSNS~rlvV~~~~~~~~~ 28 (492)
T COG0248 3 RRVAAIDLGSNSFRLVVAEITPGSFQ 28 (492)
T ss_pred ceEEEEEecCCeEEEEEEeccCCccc
Confidence 46789999999999999987754433
No 227
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=24.15 E-value=1.2e+02 Score=26.70 Aligned_cols=21 Identities=14% Similarity=0.504 Sum_probs=19.3
Q ss_pred EEEEEEecCcceEEEEEeEeC
Q 036208 200 NVLIFDLGGGTFDVSLLTIEE 220 (279)
Q Consensus 200 ~vlvvDiG~gttd~sv~~~~~ 220 (279)
++|+++.|++++-+++|+...
T Consensus 1 KILVIN~GSSS~Kfalf~~~~ 21 (388)
T PF00871_consen 1 KILVINPGSSSTKFALFDMDS 21 (388)
T ss_dssp EEEEEEEESSEEEEEEEETTT
T ss_pred CEEEEcCChHhheeeeEECCC
Confidence 589999999999999999875
No 228
>PF01150 GDA1_CD39: GDA1/CD39 (nucleoside phosphatase) family; InterPro: IPR000407 A number of nucleoside diphosphate and triphosphate hydrolases as well as some yet uncharacterised proteins have been found to belong to the same family [, ]. The uncharacterised proteins all seem to be membrane-bound. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016787 hydrolase activity; PDB: 3AAP_A 3AAR_A 3AAQ_A 3AGR_A 4A5B_B 4A57_D 4A59_A 4A5A_B 3CJA_A 3CJ1_A ....
Probab=24.06 E-value=1e+02 Score=27.58 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=21.0
Q ss_pred CCeEEEEEEecCcceEEEEEeEeC
Q 036208 197 GEKNVLIFDLGGGTFDVSLLTIEE 220 (279)
Q Consensus 197 ~~~~vlvvDiG~gttd~sv~~~~~ 220 (279)
.....+|||.|++.|.+-||++..
T Consensus 6 ~~~y~vviDAGSsgsR~~vy~~~~ 29 (434)
T PF01150_consen 6 SRKYGVVIDAGSSGSRVHVYKWRC 29 (434)
T ss_dssp EEEEEEEEEEESSEEEEEEEEEEE
T ss_pred CccEEEEEEcCCCCceEEEEEEec
Confidence 456789999999999999999954
No 229
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=23.90 E-value=75 Score=24.90 Aligned_cols=36 Identities=25% Similarity=0.289 Sum_probs=24.5
Q ss_pred eeCCCCCHHHHHHHHHHHHHcCCceeeeecchhHHH
Q 036208 149 TVPAYFNDSQRQATKDAGVISGLNVMRIINEPTAAA 184 (279)
Q Consensus 149 svP~~~~~~~r~~l~~a~~~ag~~~~~~i~e~~Aaa 184 (279)
.+|+..+..|++...-|-..|=-+.+-+++||+.|.
T Consensus 148 ~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSAL 183 (256)
T COG4598 148 AYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSAL 183 (256)
T ss_pred cCccccCchHHHHHHHHHHHhcCCceEeecCCcccC
Confidence 899999877666544333334335688999998873
No 230
>PRK09557 fructokinase; Reviewed
Probab=23.83 E-value=4.3e+02 Score=22.02 Aligned_cols=22 Identities=27% Similarity=0.277 Sum_probs=18.5
Q ss_pred EEEEEecCcceEEEEEeEeCCe
Q 036208 201 VLIFDLGGGTFDVSLLTIEEGI 222 (279)
Q Consensus 201 vlvvDiG~gttd~sv~~~~~~~ 222 (279)
.+.+|+|+..+.+.++......
T Consensus 2 ~lgidig~t~~~~~l~d~~g~i 23 (301)
T PRK09557 2 RIGIDLGGTKIEVIALDDAGEE 23 (301)
T ss_pred EEEEEECCCcEEEEEECCCCCE
Confidence 5789999999999999876543
No 231
>PF07066 DUF3882: Lactococcus phage M3 protein; InterPro: IPR009773 This family consists of several Lactococcus bacteriophage 712, middle-3 (M3) proteins of around 160 residues in length. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The function of this family is unknown.
Probab=23.59 E-value=1.2e+02 Score=22.57 Aligned_cols=21 Identities=10% Similarity=0.257 Sum_probs=17.7
Q ss_pred CEEEEEcCCcc-----eEEEEEeCCc
Q 036208 8 PAIGIDLGTTY-----SCVGVWQHDR 28 (279)
Q Consensus 8 ~vvGID~Gt~~-----t~v~~~~~~~ 28 (279)
-++.|||-|+. |..|+...+.
T Consensus 3 ~~LslD~STs~~~~~gTG~A~~~~~~ 28 (159)
T PF07066_consen 3 KVLSLDFSTSSKKGEGTGWAFFKGSD 28 (159)
T ss_pred eeEEEEEecccCCCCCceeEEecCCe
Confidence 58999999998 9988877554
No 232
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=22.35 E-value=4.9e+02 Score=22.15 Aligned_cols=91 Identities=14% Similarity=0.056 Sum_probs=44.2
Q ss_pred cccceEEeeCCCCCHHHHHH---HHHHHHHcCCceeeeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcceEEEEEeE
Q 036208 142 TIKNAVVTVPAYFNDSQRQA---TKDAGVISGLNVMRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDVSLLTI 218 (279)
Q Consensus 142 ~~~~~~isvP~~~~~~~r~~---l~~a~~~ag~~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd~sv~~~ 218 (279)
.++.++++.-+.....-|-. -+..+...+++ +..++--.|=+.+...... ...+ -+|+||= |||.+...+
T Consensus 66 did~Iavt~gPg~~~~l~vg~~~ak~la~~~~~p-~~~v~h~~aHa~sa~~~s~--~~~~-lvL~vsG--g~t~l~~~~- 138 (322)
T TIGR03722 66 DIDAVAFSQGPGLGPCLRVGATAARALALKLNKP-LVGVNHCVAHIEIGRLTTG--AKDP-VVLYVSG--GNTQVIAYR- 138 (322)
T ss_pred HCCEEEEecCCchHHhHHHHHHHHHHHHHHhCCC-eechhhHHHHHHhhhccCC--CCCC-eEEEEeC--CceEEEEEe-
Confidence 45677887744433333322 23334445654 3344433332222111111 1122 6677774 477777766
Q ss_pred eCCeEEEEEEeCCCCCchhHHHH
Q 036208 219 EEGIFEVKATAGDTHLGGEDFDN 241 (279)
Q Consensus 219 ~~~~~~~~~~~~~~~~Gg~~id~ 241 (279)
.+.++++.... ..--|+-+|.
T Consensus 139 -~~~~~~l~~t~-d~s~GrlfDa 159 (322)
T TIGR03722 139 -NGRYRVFGETL-DIGLGNALDK 159 (322)
T ss_pred -CCeEEEEEEec-cccchHHHHH
Confidence 45688887744 3334555554
No 233
>KOG1154 consensus Gamma-glutamyl kinase [Amino acid transport and metabolism]
Probab=21.97 E-value=1.9e+02 Score=23.68 Aligned_cols=58 Identities=26% Similarity=0.319 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhCCcccceEEeeCCCCCHHHHHHHHHHH-HHcCCceeeeecchhHHHH
Q 036208 128 LNKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQATKDAG-VISGLNVMRIINEPTAAAI 185 (279)
Q Consensus 128 l~~l~~~~~~~~~~~~~~~~isvP~~~~~~~r~~l~~a~-~~ag~~~~~~i~e~~Aaa~ 185 (279)
|-.+++..=.+++.+.-++-+|-|....+.+|..++.-+ +.+.+..+.++.|-.|.+.
T Consensus 100 Lmalye~lF~Qy~~~iAQvLvT~~Di~d~~~r~Nl~~Ti~eLL~m~viPIvNeNDavs~ 158 (285)
T KOG1154|consen 100 LMALYETLFTQYGITIAQVLVTRNDILDEQQRKNLQNTISELLSMNVIPIVNENDAVSP 158 (285)
T ss_pred HHHHHHHHHHHhccchheeeecCcchhhHHHHHHHHHHHHHHHhCCceeeecCCCccCC
Confidence 334455555566778889999999999999999987754 4456777777776665544
No 234
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=21.58 E-value=1.6e+02 Score=26.96 Aligned_cols=30 Identities=20% Similarity=0.294 Sum_probs=24.6
Q ss_pred CeEEEEEEecCcceEEEEEeEeCCeEEEEE
Q 036208 198 EKNVLIFDLGGGTFDVSLLTIEEGIFEVKA 227 (279)
Q Consensus 198 ~~~vlvvDiG~gttd~sv~~~~~~~~~~~~ 227 (279)
...+.+||+|.-++-+.|++..++.++.+.
T Consensus 5 ~~~~A~IDIGSNSirL~I~~~~~~~~~~l~ 34 (496)
T PRK11031 5 SSLYAAIDLGSNSFHMLVVREVAGSIQTLA 34 (496)
T ss_pred CCEEEEEEccccceeEEEEEecCCceEEee
Confidence 567899999999999999998766555543
No 235
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=21.05 E-value=3.5e+02 Score=20.02 Aligned_cols=30 Identities=13% Similarity=0.163 Sum_probs=23.9
Q ss_pred EEEEEecCcceEEEEEeEeCCeEEEEEEeC
Q 036208 201 VLIFDLGGGTFDVSLLTIEEGIFEVKATAG 230 (279)
Q Consensus 201 vlvvDiG~gttd~sv~~~~~~~~~~~~~~~ 230 (279)
+|-+|-|-..|-.++++...+.++.+..+.
T Consensus 1 ILGIDPgl~~tG~avi~~~~~~~~~i~~G~ 30 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEEDGGKLRLIDYGT 30 (149)
T ss_dssp EEEEE--SSEEEEEEEEEETTEEEEEEEEE
T ss_pred CEEECCCCCCeeEEEEEeeCCEEEEEEeCe
Confidence 578999999999999999888888887754
No 236
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=20.98 E-value=1.1e+02 Score=21.71 Aligned_cols=31 Identities=16% Similarity=0.224 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCceeeeecchhH
Q 036208 152 AYFNDSQRQATKDAGVISGLNVMRIINEPTA 182 (279)
Q Consensus 152 ~~~~~~~r~~l~~a~~~ag~~~~~~i~e~~A 182 (279)
..++..+|+.+.=|...+.=+.+.++|||.|
T Consensus 107 ~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 107 SSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp GGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred chhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 6788888888887777777788999999975
No 237
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=20.74 E-value=89 Score=27.02 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=15.1
Q ss_pred EEEEEcCCcceEEEEEeCC
Q 036208 9 AIGIDLGTTYSCVGVWQHD 27 (279)
Q Consensus 9 vvGID~Gt~~t~v~~~~~~ 27 (279)
-+|||+|.|-++++|+.+.
T Consensus 2 ~faiDIGGTL~KlVYfs~~ 20 (341)
T PF03630_consen 2 HFAIDIGGTLVKLVYFSPV 20 (341)
T ss_dssp EEEEEE-SSEEEEEEEEES
T ss_pred eEEEEcCCceEEEEEEeec
Confidence 4899999999999997443
No 238
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=20.65 E-value=1.7e+02 Score=27.75 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=18.7
Q ss_pred CCeEEEEEEecCcceEEEEEeE
Q 036208 197 GEKNVLIFDLGGGTFDVSLLTI 218 (279)
Q Consensus 197 ~~~~vlvvDiG~gttd~sv~~~ 218 (279)
..+.+|.+|+||..+-++++.-
T Consensus 16 ~~~~~L~iDIGGT~ir~al~~~ 37 (638)
T PRK14101 16 ADGPRLLADVGGTNARFALETG 37 (638)
T ss_pred CCCCEEEEEcCchhheeeeecC
Confidence 4566999999999999999853
No 239
>PRK07735 NADH dehydrogenase subunit C; Validated
Probab=20.53 E-value=2.1e+02 Score=25.45 Aligned_cols=52 Identities=13% Similarity=0.029 Sum_probs=29.3
Q ss_pred CCEEEEEcCCcceEEEEE---e-CCceEEEe-cCCCCcccceEEEEcCCceeecHHH
Q 036208 7 GPAIGIDLGTTYSCVGVW---Q-HDRVEIIA-NDQGNRTTPSYVAFTDTERLIGDAA 58 (279)
Q Consensus 7 ~~vvGID~Gt~~t~v~~~---~-~~~~~~v~-~~~~~~~~ps~i~~~~~~~~~G~~a 58 (279)
..+.|+|++..+..+.+. . +..+.+-. .+..++.+||+..+-.+-..+-.++
T Consensus 335 sdLtGVDy~~rFeVVYhLlS~~~n~rV~VKv~l~~d~P~VPSIt~I~P~AnW~EREa 391 (430)
T PRK07735 335 SELHGTDFVTHMEVYVHLYSYGKRQSVAVKVKLDREAPQVESVTPLWKGANWPEREA 391 (430)
T ss_pred eeEEeEecCCcEEEEEEEEecCCCCEEEEEEecCCCCCCCCChHHhhccCChHHHHH
Confidence 458999999866665544 2 33333322 2334557888877655443333333
No 240
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=20.46 E-value=2.1e+02 Score=21.02 Aligned_cols=63 Identities=22% Similarity=0.268 Sum_probs=42.2
Q ss_pred cceEEeeCCCCCHHHHHHHHHHHHHcCCceeeeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcceEE
Q 036208 144 KNAVVTVPAYFNDSQRQATKDAGVISGLNVMRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDV 213 (279)
Q Consensus 144 ~~~~isvP~~~~~~~r~~l~~a~~~ag~~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd~ 213 (279)
.+.++.+|......--..+ ...+++.+....|..|+..+....... ..-.++++-.|.|.+..
T Consensus 12 v~~vfg~pg~~~~~l~~~~----~~~~~~~i~~~~E~~A~~~A~g~~~~~---~~~~v~~~~~gpG~~n~ 74 (155)
T cd07035 12 VDHVFGVPGGAILPLLDAL----ARSGIRYILVRHEQGAVGMADGYARAT---GKPGVVLVTSGPGLTNA 74 (155)
T ss_pred CCEEEECCCCchHHHHHHh----ccCCCEEEEeCCHHHHHHHHHHHHHHH---CCCEEEEEcCCCcHHHH
Confidence 4789999975433333333 356788889999999988877776652 33456666667776544
No 241
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=20.37 E-value=4.1e+02 Score=23.67 Aligned_cols=21 Identities=24% Similarity=0.191 Sum_probs=18.4
Q ss_pred CCeEEEEEEecCcceEEEEEe
Q 036208 197 GEKNVLIFDLGGGTFDVSLLT 217 (279)
Q Consensus 197 ~~~~vlvvDiG~gttd~sv~~ 217 (279)
+...++-+|+|+.||.+.+++
T Consensus 142 ~~g~~lGIDiGSTttK~Vl~d 162 (404)
T TIGR03286 142 QEGLTLGIDSGSTTTKAVVME 162 (404)
T ss_pred cCCEEEEEEcChhheeeEEEc
Confidence 455789999999999999986
No 242
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=20.12 E-value=80 Score=26.77 Aligned_cols=22 Identities=32% Similarity=0.320 Sum_probs=17.9
Q ss_pred HHHcCCceeeeecchhHHHHHh
Q 036208 166 GVISGLNVMRIINEPTAAAIAY 187 (279)
Q Consensus 166 ~~~ag~~~~~~i~e~~Aaa~~~ 187 (279)
.+..|++++.+.++..|+|++-
T Consensus 86 ~~~~g~~~V~l~ND~naaa~ge 107 (316)
T TIGR00749 86 KQNLGFSHLEIINDFTAVSYAI 107 (316)
T ss_pred HHhcCCCeEEEEecHHHHHcCC
Confidence 3356887889999999999984
No 243
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=20.05 E-value=2.5e+02 Score=21.24 Aligned_cols=64 Identities=20% Similarity=0.235 Sum_probs=44.2
Q ss_pred cceEEeeCCCCCHHHHHHHHHHHHHcCCceeeeecchhHHHHHhhhccCCCCCCCeEEEEEEecCcceEE
Q 036208 144 KNAVVTVPAYFNDSQRQATKDAGVISGLNVMRIINEPTAAAIAYGLDKKAGSTGEKNVLIFDLGGGTFDV 213 (279)
Q Consensus 144 ~~~~isvP~~~~~~~r~~l~~a~~~ag~~~~~~i~e~~Aaa~~~~~~~~~~~~~~~~vlvvDiG~gttd~ 213 (279)
...++.+|......--..+ .+..+++-+....|..|+.++-.+.+.. ..-.++++-.|.|.+..
T Consensus 12 v~~vFg~pG~~~~~l~~al---~~~~~i~~v~~rhE~~A~~mAdgyar~s---g~~gv~~~t~GpG~~n~ 75 (162)
T cd07037 12 VRDVVISPGSRSAPLALAA---AEHPEFRLHVRVDERSAAFFALGLAKAS---GRPVAVVCTSGTAVANL 75 (162)
T ss_pred CCEEEECCCcchHHHHHHH---HhCCCceEEeccChHHHHHHHHHHHHhh---CCCEEEEECCchHHHHH
Confidence 3788999976544333333 2335888888889999998877776652 34567788888887754
Done!