BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036214
         (90 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
           Inhibiting Protein), A Leucine Rich Repeat Protein
           Involved In Plant Defense
          Length = 313

 Score = 38.1 bits (87), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 2/88 (2%)

Query: 3   SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSM-ILDQGLCSLVHLQELYIASNDLRGS 61
           S LN      I  S+++L YL+      GIN+ +  +   +  L  L  LYI   ++ G+
Sbjct: 58  SGLNLPKPYPIPSSLANLPYLNFL-YIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA 116

Query: 62  LPWCLANMTSLRILDVSYNQLTGSISLS 89
           +P  L+ + +L  LD SYN L+G++  S
Sbjct: 117 IPDFLSQIKTLVTLDFSYNALSGTLPPS 144



 Score = 28.5 bits (62), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 34  SSMILDQGLCSL-VHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGSIS 87
           +S+  D G   L  +L  L + +N + G+LP  L  +  L  L+VS+N L G I 
Sbjct: 231 NSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285


>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
 pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
          Length = 768

 Score = 37.7 bits (86), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 5/88 (5%)

Query: 4   ALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVH-----LQELYIASNDL 58
            L+ SF +  GE   SL  LS S  T+ ++S+      L +L       LQELY+ +N  
Sbjct: 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 406

Query: 59  RGSLPWCLANMTSLRILDVSYNQLTGSI 86
            G +P  L+N + L  L +S+N L+G+I
Sbjct: 407 TGKIPPTLSNCSELVSLHLSFNYLSGTI 434



 Score = 34.7 bits (78), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 7/73 (9%)

Query: 15  ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRI 74
           +    LK+L++SG+ I    S  +D   C  V+L+ L ++SN+    +P+ L + ++L+ 
Sbjct: 175 DGCGELKHLAISGNKI----SGDVDVSRC--VNLEFLDVSSNNFSTGIPF-LGDCSALQH 227

Query: 75  LDVSYNQLTGSIS 87
           LD+S N+L+G  S
Sbjct: 228 LDISGNKLSGDFS 240



 Score = 33.1 bits (74), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 29/49 (59%)

Query: 38  LDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGSI 86
           + Q L  +  L+ L +  NDL G +P  L+N T+L  + +S N+LTG I
Sbjct: 458 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 506



 Score = 32.7 bits (73), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 27/43 (62%)

Query: 44  SLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGSI 86
           S+ +L  L +  ND+ GS+P  + ++  L ILD+S N+L G I
Sbjct: 654 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696



 Score = 28.5 bits (62), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 5/76 (6%)

Query: 11  QSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMT 70
           + IG SM  L  L+L  + I   S  I D+ +  L  L  L ++SN L G +P  ++ +T
Sbjct: 650 KEIG-SMPYLFILNLGHNDI---SGSIPDE-VGDLRGLNILDLSSNKLDGRIPQAMSALT 704

Query: 71  SLRILDVSYNQLTGSI 86
            L  +D+S N L+G I
Sbjct: 705 MLTEIDLSNNNLSGPI 720



 Score = 27.7 bits (60), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 56  NDLRGSLPW-CLANMTSLRILDVSYNQLTGSISLS 89
           N+  G LP   L  M  L++LD+S+N+ +G +  S
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 362


>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
           Ectodomain
 pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
           Brassinolide
          Length = 772

 Score = 37.7 bits (86), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 5/88 (5%)

Query: 4   ALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVH-----LQELYIASNDL 58
            L+ SF +  GE   SL  LS S  T+ ++S+      L +L       LQELY+ +N  
Sbjct: 344 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 403

Query: 59  RGSLPWCLANMTSLRILDVSYNQLTGSI 86
            G +P  L+N + L  L +S+N L+G+I
Sbjct: 404 TGKIPPTLSNCSELVSLHLSFNYLSGTI 431



 Score = 34.3 bits (77), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 7/73 (9%)

Query: 15  ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRI 74
           +    LK+L++SG+ I    S  +D   C  V+L+ L ++SN+    +P+ L + ++L+ 
Sbjct: 172 DGCGELKHLAISGNKI----SGDVDVSRC--VNLEFLDVSSNNFSTGIPF-LGDCSALQH 224

Query: 75  LDVSYNQLTGSIS 87
           LD+S N+L+G  S
Sbjct: 225 LDISGNKLSGDFS 237



 Score = 32.7 bits (73), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 29/49 (59%)

Query: 38  LDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGSI 86
           + Q L  +  L+ L +  NDL G +P  L+N T+L  + +S N+LTG I
Sbjct: 455 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 503



 Score = 32.7 bits (73), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 27/43 (62%)

Query: 44  SLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGSI 86
           S+ +L  L +  ND+ GS+P  + ++  L ILD+S N+L G I
Sbjct: 651 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 693



 Score = 28.5 bits (62), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 5/76 (6%)

Query: 11  QSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMT 70
           + IG SM  L  L+L  + I   S  I D+ +  L  L  L ++SN L G +P  ++ +T
Sbjct: 647 KEIG-SMPYLFILNLGHNDI---SGSIPDE-VGDLRGLNILDLSSNKLDGRIPQAMSALT 701

Query: 71  SLRILDVSYNQLTGSI 86
            L  +D+S N L+G I
Sbjct: 702 MLTEIDLSNNNLSGPI 717



 Score = 27.7 bits (60), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 56  NDLRGSLPW-CLANMTSLRILDVSYNQLTGSISLS 89
           N+  G LP   L  M  L++LD+S+N+ +G +  S
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 359


>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
           Rbc36 In Complex With H-Trisaccharide
          Length = 229

 Score = 33.5 bits (75), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 29/41 (70%), Gaps = 2/41 (4%)

Query: 44  SLVHLQELYIASNDLRGSLP-WCLANMTSLRILDVSYNQLT 83
           SL++L+ELY+ SN L G+LP     ++T L +LD+  NQLT
Sbjct: 62  SLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT 101



 Score = 32.3 bits (72), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 5/70 (7%)

Query: 13  IGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSL 72
           + +S++ L  L L  + + +  S + D+    LVHL+EL++  N L   LP  +  +T L
Sbjct: 83  VFDSLTQLTVLDLGTNQLTVLPSAVFDR----LVHLKELFMCCNKLT-ELPRGIERLTHL 137

Query: 73  RILDVSYNQL 82
             L +  NQL
Sbjct: 138 THLALDQNQL 147


>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
 pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
 pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
 pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
          Length = 477

 Score = 33.1 bits (74), Expect = 0.038,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 4/64 (6%)

Query: 20  LKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSY 79
           L++L+LS + I    S I    L  L+ LQE+ +    L    P+    +  LR+L+VS 
Sbjct: 250 LRFLNLSYNPI----STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSG 305

Query: 80  NQLT 83
           NQLT
Sbjct: 306 NQLT 309



 Score = 25.4 bits (54), Expect = 7.6,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 30 IGINSSMILDQG-LCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL 82
          +G N    L+Q    S  HL+EL +  N +    P    N+ +LR L +  N+L
Sbjct: 39 LGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92


>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
 pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
 pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
 pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
          Length = 727

 Score = 33.1 bits (74), Expect = 0.043,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 1/36 (2%)

Query: 48  LQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLT 83
           L  LY+  N L   LP  + N+++LR+LD+S+N+LT
Sbjct: 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT 283


>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
           Tlr5 In Complex With Salmonella Flagellin
 pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
           Tlr5 In Complex With Salmonella Flagellin
          Length = 455

 Score = 30.8 bits (68), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 4/75 (5%)

Query: 8   SFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLA 67
           + L+S+    + L+ L+L+ + I    + I D     L HL +L ++ N L         
Sbjct: 289 ALLKSVFSHFTDLEQLTLAQNEI----NKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFE 344

Query: 68  NMTSLRILDVSYNQL 82
           N+  L +LD+SYN +
Sbjct: 345 NLDKLEVLDLSYNHI 359


>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
          Length = 462

 Score = 30.4 bits (67), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 8/68 (11%)

Query: 15  ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRI 74
           +++++L  L LS +TI   S+      L  L  LQ+L  +SN +    P  LAN+T+L  
Sbjct: 126 KNLTNLNRLELSSNTISDISA------LSGLTSLQQLNFSSNQVTDLKP--LANLTTLER 177

Query: 75  LDVSYNQL 82
           LD+S N++
Sbjct: 178 LDISSNKV 185


>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
          Length = 462

 Score = 30.0 bits (66), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 8/68 (11%)

Query: 15  ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRI 74
           +++++L  L LS +TI   S+      L  L  LQ+L  +SN +    P  LAN+T+L  
Sbjct: 126 KNLTNLNRLELSSNTISDISA------LSGLTSLQQLSFSSNQVTDLKP--LANLTTLER 177

Query: 75  LDVSYNQL 82
           LD+S N++
Sbjct: 178 LDISSNKV 185


>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
          Length = 462

 Score = 30.0 bits (66), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 8/68 (11%)

Query: 15  ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRI 74
           +++++L  L LS +TI   S+      L  L  LQ+L  +SN +    P  LAN+T+L  
Sbjct: 126 KNLTNLNRLELSSNTISDISA------LSGLTSLQQLSFSSNQVTDLKP--LANLTTLER 177

Query: 75  LDVSYNQL 82
           LD+S N++
Sbjct: 178 LDISSNKV 185


>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
           Peptide Inhibitor
          Length = 269

 Score = 29.3 bits (64), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 13  IGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSL 72
           +G+++ +L  L +S + +   +S+ L   L  L  LQELY+  N+L+   P  L     L
Sbjct: 95  LGQTLPALTVLDVSFNRL---TSLPLG-ALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150

Query: 73  RILDVSYNQLT 83
             L ++ NQLT
Sbjct: 151 EKLSLANNQLT 161


>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
           And The Von Willebrand Factor A1 Domain
          Length = 290

 Score = 29.3 bits (64), Expect = 0.58,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 4/74 (5%)

Query: 10  LQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANM 69
           L  +G+++ +L  L +S + +   +S+ L   L  L  LQELY+  N+L+   P  L   
Sbjct: 92  LPLLGQTLPALTVLDVSFNRL---TSLPLG-ALRGLGELQELYLKGNELKTLPPGLLTPT 147

Query: 70  TSLRILDVSYNQLT 83
             L  L ++ NQLT
Sbjct: 148 PKLEKLSLANNQLT 161



 Score = 25.4 bits (54), Expect = 8.0,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 48  LQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLT 83
           L  L ++ N L+ SLP     + +L +LDVS+N+LT
Sbjct: 79  LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT 113


>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
           Botrocetin Complex
          Length = 265

 Score = 29.3 bits (64), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 13  IGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSL 72
           +G+++ +L  L +S + +   +S+ L   L  L  LQELY+  N+L+   P  L     L
Sbjct: 95  LGQTLPALTVLDVSFNRL---TSLPLG-ALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150

Query: 73  RILDVSYNQLT 83
             L ++ NQLT
Sbjct: 151 EKLSLANNQLT 161


>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
           Domain Of Glycoprotein Ib Alpha
 pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
           Domain Of Glycoprotein Ib Alpha
          Length = 290

 Score = 29.3 bits (64), Expect = 0.60,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 4/74 (5%)

Query: 10  LQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANM 69
           L  +G+++ +L  L +S + +   +S+ L   L  L  LQELY+  N+L+   P  L   
Sbjct: 92  LPLLGQTLPALTVLDVSFNRL---TSLPLG-ALRGLGELQELYLKGNELKTLPPGLLTPT 147

Query: 70  TSLRILDVSYNQLT 83
             L  L ++ NQLT
Sbjct: 148 PKLEKLSLANNQLT 161



 Score = 25.4 bits (54), Expect = 8.2,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 48  LQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLT 83
           L  L ++ N L+ SLP     + +L +LDVS+N+LT
Sbjct: 79  LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT 113


>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
 pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
 pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
 pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
 pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
 pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
 pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
 pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
          Length = 612

 Score = 28.1 bits (61), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 15  ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRI 74
           E + +L+ L LS S   I +S   +  L +L HLQ L ++ N+  G           L +
Sbjct: 346 EKLENLQKLDLSHS--DIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLEL 403

Query: 75  LDVSYNQLTGSISLSP 90
           LDV++  L      SP
Sbjct: 404 LDVAFTHLHVKAPHSP 419


>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
           An Electron Microscopy Single Particle Reconstruction
 pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
           An Electron Microscopy Single Particle Reconstruction
          Length = 844

 Score = 28.1 bits (61), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 24/39 (61%)

Query: 45  LVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLT 83
           L HLQ LY+  N L    P   +++T+LR L ++ N+LT
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517


>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
          Length = 562

 Score = 27.3 bits (59), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 7/85 (8%)

Query: 1   MRSALNTSFLQSI-GESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLR 59
           M S  +T F+  +   S SS  +L+ + +    +    + QG  +L  LQ L +  N L+
Sbjct: 335 MLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDS----VFQGCSTLKRLQTLILQRNGLK 390

Query: 60  GSLPWCL--ANMTSLRILDVSYNQL 82
                 L   NM+SL  LDVS N L
Sbjct: 391 NFFKVALMTKNMSSLETLDVSLNSL 415


>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
           Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
           Resolution
 pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
           Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
           Resolution
 pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
           Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
           Resolution
          Length = 290

 Score = 26.9 bits (58), Expect = 2.6,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 10  LQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANM 69
           L  +G+++ +L  L +S + +   +S+ L   L  L  LQELY+  N+L+   P  L   
Sbjct: 92  LPLLGQTLPALTVLDVSFNRL---TSLPLG-ALRGLGELQELYLKGNELKTLPPGLLTPT 147

Query: 70  TSLRILDVSYNQLT 83
             L  L ++ N LT
Sbjct: 148 PKLEKLSLANNNLT 161



 Score = 25.4 bits (54), Expect = 8.3,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 48  LQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLT 83
           L  L ++ N L+ SLP     + +L +LDVS+N+LT
Sbjct: 79  LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT 113


>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
           Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
           2.6 Angstrom Resolution
          Length = 288

 Score = 26.9 bits (58), Expect = 2.8,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 10  LQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANM 69
           L  +G+++ +L  L +S + +   +S+ L   L  L  LQELY+  N+L+   P  L   
Sbjct: 92  LPLLGQTLPALTVLDVSFNRL---TSLPLG-ALRGLGELQELYLKGNELKTLPPGLLTPT 147

Query: 70  TSLRILDVSYNQLT 83
             L  L ++ N LT
Sbjct: 148 PKLEKLSLANNDLT 161



 Score = 25.4 bits (54), Expect = 8.1,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 48  LQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLT 83
           L  L ++ N L+ SLP     + +L +LDVS+N+LT
Sbjct: 79  LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT 113


>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
           Gpib-alpha And Human Alpha-thrombin
          Length = 290

 Score = 26.9 bits (58), Expect = 3.0,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 10  LQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANM 69
           L  +G+++ +L  L +S + +   +S+ L   L  L  LQELY+  N+L+   P  L   
Sbjct: 92  LPLLGQTLPALTVLDVSFNRL---TSLPLG-ALRGLGELQELYLKGNELKTLPPGLLTPT 147

Query: 70  TSLRILDVSYNQLT 83
             L  L ++ N LT
Sbjct: 148 PKLEKLSLANNNLT 161



 Score = 25.4 bits (54), Expect = 9.1,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 48  LQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLT 83
           L  L ++ N L+ SLP     + +L +LDVS+N+LT
Sbjct: 79  LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT 113


>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
           Interaction With Two Distinct Alpha-Thrombin Sites
          Length = 290

 Score = 26.9 bits (58), Expect = 3.1,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 10  LQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANM 69
           L  +G+++ +L  L +S + +   +S+ L   L  L  LQELY+  N+L+   P  L   
Sbjct: 92  LPLLGQTLPALTVLDVSFNRL---TSLPLG-ALRGLGELQELYLKGNELKTLPPGLLTPT 147

Query: 70  TSLRILDVSYNQLT 83
             L  L ++ N LT
Sbjct: 148 PKLEKLSLANNNLT 161



 Score = 25.4 bits (54), Expect = 9.3,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 48  LQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLT 83
           L  L ++ N L+ SLP     + +L +LDVS+N+LT
Sbjct: 79  LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT 113


>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
           Tlr5
          Length = 407

 Score = 26.9 bits (58), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 4/66 (6%)

Query: 8   SFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLA 67
           + L+S+    + L+ L+L+ + I    + I D     L HL+EL + +N L+        
Sbjct: 289 ALLKSVFSHFTDLEQLTLAQNEI----NKIDDNAFWGLTHLKELALDTNQLKSVPDGIFD 344

Query: 68  NMTSLR 73
            +TSL+
Sbjct: 345 RLTSLQ 350


>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
           Gpib-alpha And Alpha-thrombin At 2.6a
          Length = 279

 Score = 26.6 bits (57), Expect = 3.5,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 10  LQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANM 69
           L  +G+++ +L  L +S + +   +S+ L   L  L  LQELY+  N+L+   P  L   
Sbjct: 92  LPLLGQTLPALTVLDVSFNRL---TSLPLG-ALRGLGELQELYLKGNELKTLPPGLLTPT 147

Query: 70  TSLRILDVSYNQLT 83
             L  L ++ N LT
Sbjct: 148 PKLEKLSLANNNLT 161


>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
 pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
          Length = 281

 Score = 26.6 bits (57), Expect = 3.6,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 10  LQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANM 69
           L  +G+++ +L  L +S + +   +S+ L   L  L  LQELY+  N+L+   P  L   
Sbjct: 93  LPLLGQTLPALTVLDVSFNRL---TSLPLG-ALRGLGELQELYLKGNELKTLPPGLLTPT 148

Query: 70  TSLRILDVSYNQLT 83
             L  L ++ N LT
Sbjct: 149 PKLEKLSLANNNLT 162


>pdb|1HNH|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii +
           Degraded Form Of Acetyl-Coa
          Length = 317

 Score = 26.2 bits (56), Expect = 5.4,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 45  LVHLQELYIASNDL-RGSLPWCLANMTSLRILDVSYNQLTGS 85
           L H+ +  +A+N+L R  L W + +  +LRI+  +  +L  S
Sbjct: 220 LAHIVDETLAANNLDRSQLDWLVPHQANLRIISATAKKLGXS 261


>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
 pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
          Length = 606

 Score = 26.2 bits (56), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 5/70 (7%)

Query: 17  MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSL-PWCLANMTSLRIL 75
           +S+LK L LS +    N   I      SL HL    I  N  R  L   CL N+ +LR L
Sbjct: 300 LSTLKKLVLSANKFE-NLCQISASNFPSLTHLS---IKGNTKRLELGTGCLENLENLREL 355

Query: 76  DVSYNQLTGS 85
           D+S++ +  S
Sbjct: 356 DLSHDDIETS 365


>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
 pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
 pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
 pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
          Length = 606

 Score = 25.8 bits (55), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)

Query: 45  LVHLQELYIASNDLRG-SLPWCLANMTSLRILDVSYN 80
           L+ L++L +A N +    LP   +N+T+L  +D+SYN
Sbjct: 127 LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163


>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
          Length = 599

 Score = 25.8 bits (55), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)

Query: 45  LVHLQELYIASNDLRG-SLPWCLANMTSLRILDVSYN 80
           L+ L++L +A N +    LP   +N+T+L  +D+SYN
Sbjct: 122 LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 158


>pdb|3IL9|A Chain A, Structure Of E. Coli Fabh
 pdb|3IL9|B Chain B, Structure Of E. Coli Fabh
          Length = 340

 Score = 25.8 bits (55), Expect = 6.9,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 45  LVHLQELYIASNDL-RGSLPWCLANMTSLRILDVSYNQLTGSI 86
           L H+ +  +A+N+L R  L W + +  +LRI+  +  +L  S+
Sbjct: 243 LAHIVDETLAANNLDRSQLDWLVPHQANLRIISATAKKLGMSM 285


>pdb|1MZS|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii With
           Bound Dichlorobenzyloxy-Indole-Carboxylic Acid Inhibitor
          Length = 317

 Score = 25.8 bits (55), Expect = 7.4,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 45  LVHLQELYIASNDL-RGSLPWCLANMTSLRILDVSYNQLTGSI 86
           L H+ +  +A+N+L R  L W + +  +LRI+  +  +L  S+
Sbjct: 220 LAHIVDETLAANNLDRSQLDWLVPHQANLRIISATAKKLGMSM 262


>pdb|1HN9|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii
 pdb|1HN9|B Chain B, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii
 pdb|1HND|A Chain A, Crystal Structure Of Beta-ketoacyl-acp Synthase Iii-coa
           Complex
 pdb|1HNJ|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii +
           Malonyl-Coa
 pdb|1HNK|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii, Apo
           Tetragonal Form
 pdb|2EFT|A Chain A, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
           Ketoacyl Synthase Iii (Fabh) And Coenzyme A (High
           Concentration (1.7mm) Soak)
 pdb|2EFT|B Chain B, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
           Ketoacyl Synthase Iii (Fabh) And Coenzyme A (High
           Concentration (1.7mm) Soak)
 pdb|2GYO|A Chain A, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
           Ketoacyl Synthase Iii (Fabh) And Coenzyme A
 pdb|2GYO|B Chain B, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
           Ketoacyl Synthase Iii (Fabh) And Coenzyme A
          Length = 317

 Score = 25.8 bits (55), Expect = 7.4,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 45  LVHLQELYIASNDL-RGSLPWCLANMTSLRILDVSYNQLTGSI 86
           L H+ +  +A+N+L R  L W + +  +LRI+  +  +L  S+
Sbjct: 220 LAHIVDETLAANNLDRSQLDWLVPHQANLRIISATAKKLGMSM 262


>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
           Ra Complex
 pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
           Ra Complex
          Length = 605

 Score = 25.4 bits (54), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 1/36 (2%)

Query: 48  LQELYIASNDLRG-SLPWCLANMTSLRILDVSYNQL 82
           L+EL +A N ++   LP   +N+T+L  LD+S N++
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161


>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
           And T399i In Complex With Md-2 And Lps
 pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
           And T399i In Complex With Md-2 And Lps
          Length = 635

 Score = 25.4 bits (54), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 1/36 (2%)

Query: 48  LQELYIASNDLRG-SLPWCLANMTSLRILDVSYNQL 82
           L+EL +A N ++   LP   +N+T+L  LD+S N++
Sbjct: 150 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185


>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
           Hagfish Vlrb.61
          Length = 570

 Score = 25.4 bits (54), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 1/36 (2%)

Query: 48  LQELYIASNDLRG-SLPWCLANMTSLRILDVSYNQL 82
           L+EL +A N ++   LP   +N+T+L  LD+S N++
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161


>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
 pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
          Length = 461

 Score = 25.0 bits (53), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 13/70 (18%)

Query: 15  ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASN--DLRGSLPWCLANMTSL 72
           +++++L  L LS +TI   S+      L  L  LQ+L   +   DL+      LAN+T+L
Sbjct: 126 KNLTNLNRLELSSNTISDISA------LSGLTSLQQLNFGNQVTDLK-----PLANLTTL 174

Query: 73  RILDVSYNQL 82
             LD+S N++
Sbjct: 175 ERLDISSNKV 184


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.130    0.359 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,054,261
Number of Sequences: 62578
Number of extensions: 63865
Number of successful extensions: 324
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 247
Number of HSP's gapped (non-prelim): 106
length of query: 90
length of database: 14,973,337
effective HSP length: 57
effective length of query: 33
effective length of database: 11,406,391
effective search space: 376410903
effective search space used: 376410903
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)