Query 036214
Match_columns 90
No_of_seqs 105 out of 1313
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 10:33:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036214.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036214hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03150 hypothetical protein; 99.5 2.3E-13 5.1E-18 91.8 7.1 82 2-88 427-508 (623)
2 PLN00113 leucine-rich repeat r 99.3 8.9E-12 1.9E-16 87.2 6.3 82 2-88 508-589 (968)
3 PLN00113 leucine-rich repeat r 99.3 1.6E-11 3.5E-16 85.9 6.2 82 2-88 484-565 (968)
4 PF13855 LRR_8: Leucine rich r 99.2 2.1E-11 4.6E-16 59.6 4.2 61 18-82 1-61 (61)
5 PLN03150 hypothetical protein; 98.9 5.3E-09 1.2E-13 71.0 6.8 77 2-83 451-528 (623)
6 KOG0617 Ras suppressor protein 98.7 1.6E-09 3.4E-14 63.4 -0.4 75 2-84 42-116 (264)
7 KOG4194 Membrane glycoprotein 98.6 6.3E-09 1.4E-13 70.0 -0.8 79 3-86 303-381 (873)
8 PF12799 LRR_4: Leucine Rich r 98.6 1.7E-07 3.8E-12 42.8 4.1 36 47-83 2-37 (44)
9 PF13855 LRR_8: Leucine rich r 98.6 8.1E-08 1.8E-12 46.7 3.0 52 2-58 10-61 (61)
10 KOG0472 Leucine-rich repeat pr 98.5 1.3E-07 2.9E-12 61.4 3.9 78 2-83 443-541 (565)
11 KOG4194 Membrane glycoprotein 98.4 9.5E-08 2.1E-12 64.5 1.3 64 17-84 268-331 (873)
12 PF14580 LRR_9: Leucine-rich r 98.4 5.6E-07 1.2E-11 52.6 4.1 61 17-84 41-102 (175)
13 KOG0617 Ras suppressor protein 98.3 4.7E-08 1E-12 57.3 -1.8 70 9-83 94-163 (264)
14 PF12799 LRR_4: Leucine Rich r 98.2 3.8E-06 8.2E-11 38.4 4.2 40 18-63 1-40 (44)
15 PF14580 LRR_9: Leucine-rich r 98.2 4.4E-06 9.5E-11 48.9 4.6 68 12-85 59-128 (175)
16 KOG4237 Extracellular matrix p 98.2 1.1E-06 2.4E-11 56.9 1.9 75 8-87 264-339 (498)
17 KOG4658 Apoptotic ATPase [Sign 98.1 2.2E-06 4.7E-11 60.6 2.8 72 8-84 561-632 (889)
18 KOG0472 Leucine-rich repeat pr 98.1 1.3E-06 2.8E-11 56.9 1.5 66 12-84 223-289 (565)
19 KOG0444 Cytoskeletal regulator 98.1 6.7E-07 1.5E-11 61.3 -0.4 74 2-83 231-304 (1255)
20 PRK15387 E3 ubiquitin-protein 98.0 5.5E-06 1.2E-10 57.9 3.3 60 19-87 403-462 (788)
21 KOG0618 Serine/threonine phosp 97.9 1.6E-06 3.5E-11 60.9 -0.2 64 3-72 369-432 (1081)
22 KOG1259 Nischarin, modulator o 97.9 4.1E-06 9E-11 53.1 0.8 61 17-84 283-343 (490)
23 KOG0444 Cytoskeletal regulator 97.9 9.5E-06 2.1E-10 55.9 2.2 71 7-84 93-164 (1255)
24 KOG4237 Extracellular matrix p 97.8 5.6E-06 1.2E-10 53.8 1.0 77 2-83 283-359 (498)
25 cd00116 LRR_RI Leucine-rich re 97.8 4.2E-05 9.1E-10 47.7 4.7 13 70-82 193-205 (319)
26 PLN03210 Resistant to P. syrin 97.8 7.9E-05 1.7E-09 54.2 6.1 74 9-88 626-699 (1153)
27 KOG0618 Serine/threonine phosp 97.8 4E-06 8.7E-11 59.1 -0.6 71 7-84 396-466 (1081)
28 cd00116 LRR_RI Leucine-rich re 97.7 5.5E-05 1.2E-09 47.1 3.9 38 46-83 137-178 (319)
29 PLN03210 Resistant to P. syrin 97.7 0.00022 4.8E-09 52.0 6.9 77 4-87 789-886 (1153)
30 KOG0532 Leucine-rich repeat (L 97.6 1.8E-05 3.9E-10 53.6 0.6 67 10-84 182-248 (722)
31 KOG1259 Nischarin, modulator o 97.6 5.5E-05 1.2E-09 48.2 2.3 66 8-81 298-363 (490)
32 KOG4579 Leucine-rich repeat (L 97.5 1.6E-05 3.5E-10 45.2 -0.4 61 18-84 53-114 (177)
33 PRK15370 E3 ubiquitin-protein 97.5 0.0004 8.7E-09 48.8 6.0 35 47-84 263-297 (754)
34 PRK15370 E3 ubiquitin-protein 97.4 0.00056 1.2E-08 48.1 5.4 68 3-84 209-276 (754)
35 KOG4579 Leucine-rich repeat (L 97.3 8.3E-05 1.8E-09 42.4 0.4 72 6-83 65-136 (177)
36 COG4886 Leucine-rich repeat (L 97.1 0.00028 6.2E-09 45.6 1.9 60 19-84 141-200 (394)
37 KOG2123 Uncharacterized conser 97.1 8.9E-05 1.9E-09 46.7 -0.4 69 13-88 36-106 (388)
38 KOG2739 Leucine-rich acidic nu 97.0 0.00039 8.4E-09 42.9 1.7 65 17-83 64-129 (260)
39 KOG1859 Leucine-rich repeat pr 97.0 0.00011 2.3E-09 51.5 -1.2 59 17-82 186-244 (1096)
40 KOG0532 Leucine-rich repeat (L 96.9 8.3E-05 1.8E-09 50.5 -1.9 72 5-84 154-225 (722)
41 KOG2739 Leucine-rich acidic nu 96.9 0.00065 1.4E-08 42.0 2.1 61 17-83 42-104 (260)
42 PF00560 LRR_1: Leucine Rich R 96.9 0.00061 1.3E-08 26.3 1.2 17 48-65 2-18 (22)
43 PRK15387 E3 ubiquitin-protein 96.8 0.0035 7.6E-08 44.4 5.0 41 8-59 215-255 (788)
44 KOG4658 Apoptotic ATPase [Sign 96.7 0.0012 2.6E-08 47.2 2.5 71 3-79 581-651 (889)
45 KOG0531 Protein phosphatase 1, 96.7 0.00098 2.1E-08 43.7 1.7 38 43-82 115-152 (414)
46 KOG1644 U2-associated snRNP A' 96.7 0.0032 6.9E-08 38.0 3.5 58 20-83 44-101 (233)
47 KOG0531 Protein phosphatase 1, 96.6 0.00084 1.8E-08 44.0 0.9 64 13-85 114-177 (414)
48 KOG1859 Leucine-rich repeat pr 96.5 0.00056 1.2E-08 48.1 -0.2 73 2-84 196-268 (1096)
49 COG4886 Leucine-rich repeat (L 96.5 0.0016 3.5E-08 42.1 1.7 67 8-81 154-220 (394)
50 KOG3665 ZYG-1-like serine/thre 96.0 0.0067 1.4E-07 42.6 2.7 49 8-59 138-186 (699)
51 KOG1644 U2-associated snRNP A' 95.9 0.011 2.5E-07 35.7 3.0 63 17-84 63-127 (233)
52 KOG1909 Ran GTPase-activating 95.8 0.012 2.5E-07 38.2 3.1 66 17-82 184-253 (382)
53 KOG3207 Beta-tubulin folding c 95.7 0.0035 7.6E-08 41.6 0.4 13 70-82 301-313 (505)
54 KOG2982 Uncharacterized conser 95.6 0.014 3.1E-07 37.5 2.9 60 17-81 96-157 (418)
55 KOG2982 Uncharacterized conser 95.1 0.018 4E-07 37.0 2.2 65 17-83 70-134 (418)
56 KOG3207 Beta-tubulin folding c 95.0 0.012 2.6E-07 39.2 1.1 35 46-80 197-232 (505)
57 KOG1909 Ran GTPase-activating 94.9 0.035 7.6E-07 36.1 3.0 71 11-84 207-284 (382)
58 smart00370 LRR Leucine-rich re 93.7 0.082 1.8E-06 20.8 2.0 13 47-59 3-15 (26)
59 smart00369 LRR_TYP Leucine-ric 93.7 0.082 1.8E-06 20.8 2.0 13 47-59 3-15 (26)
60 PF13516 LRR_6: Leucine Rich r 92.6 0.046 9.9E-07 21.2 0.4 11 19-29 3-13 (24)
61 KOG3665 ZYG-1-like serine/thre 92.3 0.12 2.6E-06 36.6 2.4 57 16-79 171-229 (699)
62 KOG2120 SCF ubiquitin ligase, 90.5 0.23 5E-06 32.2 2.0 65 11-80 306-373 (419)
63 KOG2123 Uncharacterized conser 89.8 0.023 5.1E-07 36.2 -2.6 60 17-84 18-77 (388)
64 smart00365 LRR_SD22 Leucine-ri 89.4 0.42 9E-06 19.1 1.7 14 70-83 2-15 (26)
65 PRK15386 type III secretion pr 89.2 1.5 3.3E-05 29.5 5.1 53 17-80 51-104 (426)
66 KOG3864 Uncharacterized conser 88.0 0.15 3.3E-06 30.9 -0.0 59 17-78 124-184 (221)
67 smart00368 LRR_RI Leucine rich 87.6 0.59 1.3E-05 18.8 1.7 14 70-83 2-15 (28)
68 smart00364 LRR_BAC Leucine-ric 87.0 0.44 9.5E-06 19.1 1.1 17 47-64 3-19 (26)
69 COG5238 RNA1 Ran GTPase-activa 85.7 1.3 2.8E-05 28.6 3.2 39 44-82 90-132 (388)
70 PF13306 LRR_5: Leucine rich r 84.1 3.1 6.7E-05 22.3 4.0 57 17-79 34-90 (129)
71 KOG2120 SCF ubiquitin ligase, 83.4 0.24 5.2E-06 32.1 -0.7 58 20-80 187-244 (419)
72 COG5238 RNA1 Ran GTPase-activa 75.1 14 0.00029 24.2 5.0 69 11-83 86-170 (388)
73 KOG3763 mRNA export factor TAP 74.4 2.3 5E-05 29.6 1.7 65 17-85 217-285 (585)
74 TIGR00864 PCC polycystin catio 72.3 3.5 7.7E-05 33.9 2.4 32 24-59 1-32 (2740)
75 KOG0473 Leucine-rich repeat pr 66.3 0.14 3.1E-06 32.0 -4.8 40 42-82 84-123 (326)
76 smart00367 LRR_CC Leucine-rich 64.3 6.2 0.00013 15.2 1.4 12 70-81 2-13 (26)
77 PRK15386 type III secretion pr 52.7 27 0.00059 23.8 3.5 42 42-87 48-89 (426)
78 TIGR00864 PCC polycystin catio 37.6 32 0.00069 29.1 2.4 30 2-34 4-33 (2740)
79 KOG1947 Leucine rich repeat pr 31.6 58 0.0012 21.5 2.6 11 17-27 213-223 (482)
80 smart00446 LRRcap occurring C- 28.8 43 0.00093 13.3 1.0 10 17-26 12-21 (26)
No 1
>PLN03150 hypothetical protein; Provisional
Probab=99.46 E-value=2.3e-13 Score=91.81 Aligned_cols=82 Identities=30% Similarity=0.494 Sum_probs=76.8
Q ss_pred CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214 2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ 81 (90)
Q Consensus 2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~ 81 (90)
+|.+.|.+|+.+.. +++|+.|++++|. +.+.+ |. .+..++.|+.|+++.|.+++.+|..+..+++|+.|++++|.
T Consensus 427 ~n~L~g~ip~~i~~-L~~L~~L~Ls~N~--l~g~i-P~-~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~ 501 (623)
T PLN03150 427 NQGLRGFIPNDISK-LRHLQSINLSGNS--IRGNI-PP-SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501 (623)
T ss_pred CCCccccCCHHHhC-CCCCCEEECCCCc--ccCcC-Ch-HHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCc
Confidence 46778899999998 9999999999999 88887 88 89999999999999999999999999999999999999999
Q ss_pred CcccCCC
Q 036214 82 LTGSISL 88 (90)
Q Consensus 82 l~~~~p~ 88 (90)
+.|.+|.
T Consensus 502 l~g~iP~ 508 (623)
T PLN03150 502 LSGRVPA 508 (623)
T ss_pred ccccCCh
Confidence 9999986
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.28 E-value=8.9e-12 Score=87.17 Aligned_cols=82 Identities=24% Similarity=0.381 Sum_probs=53.8
Q ss_pred CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214 2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ 81 (90)
Q Consensus 2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~ 81 (90)
+|.+.+.+|+.+.. +++|++|++++|. +.+.+ |. .+..++.|+.+++++|++.+.+|..+..+.+|+.+++++|+
T Consensus 508 ~N~l~~~~p~~~~~-l~~L~~L~Ls~N~--l~~~~-p~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~ 582 (968)
T PLN00113 508 ENKLSGEIPDELSS-CKKLVSLDLSHNQ--LSGQI-PA-SFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNH 582 (968)
T ss_pred CCcceeeCChHHcC-ccCCCEEECCCCc--ccccC-Ch-hHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCc
Confidence 35555666666665 6666666666666 66555 55 56666666677777776666666666666667777777777
Q ss_pred CcccCCC
Q 036214 82 LTGSISL 88 (90)
Q Consensus 82 l~~~~p~ 88 (90)
+.+.+|.
T Consensus 583 l~~~~p~ 589 (968)
T PLN00113 583 LHGSLPS 589 (968)
T ss_pred ceeeCCC
Confidence 7666664
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.25 E-value=1.6e-11 Score=85.90 Aligned_cols=82 Identities=32% Similarity=0.477 Sum_probs=74.7
Q ss_pred CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214 2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ 81 (90)
Q Consensus 2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~ 81 (90)
+|.+.+.+|..+.. ++.|+.|++++|. +.+.+ |. .+..+++|+.+++++|.+++.+|..+..+++|+.|++++|+
T Consensus 484 ~n~l~~~~~~~~~~-l~~L~~L~Ls~N~--l~~~~-p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 558 (968)
T PLN00113 484 RNQFSGAVPRKLGS-LSELMQLKLSENK--LSGEI-PD-ELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQ 558 (968)
T ss_pred CCccCCccChhhhh-hhccCEEECcCCc--ceeeC-Ch-HHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCc
Confidence 57788888888888 9999999999999 88877 87 88899999999999999999999999999999999999999
Q ss_pred CcccCCC
Q 036214 82 LTGSISL 88 (90)
Q Consensus 82 l~~~~p~ 88 (90)
+.+.+|.
T Consensus 559 l~~~~p~ 565 (968)
T PLN00113 559 LSGEIPK 565 (968)
T ss_pred ccccCCh
Confidence 9998885
No 4
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.23 E-value=2.1e-11 Score=59.56 Aligned_cols=61 Identities=31% Similarity=0.462 Sum_probs=53.3
Q ss_pred CCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214 18 SSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL 82 (90)
Q Consensus 18 ~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l 82 (90)
++|++|++++|. +.... +. .|..+++|+++++++|.++...+..|..+++|+.+++++|++
T Consensus 1 p~L~~L~l~~n~--l~~i~-~~-~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNK--LTEIP-PD-SFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSST--ESEEC-TT-TTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCC--CCccC-HH-HHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 478999999999 77653 45 789999999999999999966667899999999999999975
No 5
>PLN03150 hypothetical protein; Provisional
Probab=98.91 E-value=5.3e-09 Score=71.03 Aligned_cols=77 Identities=25% Similarity=0.336 Sum_probs=67.6
Q ss_pred CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcC-CCccEEeccCC
Q 036214 2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANM-TSLRILDVSYN 80 (90)
Q Consensus 2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l-~~L~~l~l~~n 80 (90)
.|.+.|.+|+.+.. ++.|+.|++++|. +.+.+ |. .+..+++|+.|++++|.+++.+|..+..+ .++..+++.+|
T Consensus 451 ~N~l~g~iP~~~~~-l~~L~~LdLs~N~--lsg~i-P~-~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 451 GNSIRGNIPPSLGS-ITSLEVLDLSYNS--FNGSI-PE-SLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CCcccCcCChHHhC-CCCCCEEECCCCC--CCCCC-ch-HHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCC
Confidence 57889999999998 9999999999999 89887 88 89999999999999999999999988764 45678888887
Q ss_pred cCc
Q 036214 81 QLT 83 (90)
Q Consensus 81 ~l~ 83 (90)
...
T Consensus 526 ~~l 528 (623)
T PLN03150 526 AGL 528 (623)
T ss_pred ccc
Confidence 633
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.73 E-value=1.6e-09 Score=63.44 Aligned_cols=75 Identities=29% Similarity=0.462 Sum_probs=64.0
Q ss_pred CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214 2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ 81 (90)
Q Consensus 2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~ 81 (90)
.|+++ .+|+.+.. +.+|+.|.+..|+ +... |. .+..++.|+.++++.|++. ..|..|+.++.|+.+++.+|+
T Consensus 42 HNKl~-~vppnia~-l~nlevln~~nnq--ie~l--p~-~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynn 113 (264)
T KOG0617|consen 42 HNKLT-VVPPNIAE-LKNLEVLNLSNNQ--IEEL--PT-SISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNN 113 (264)
T ss_pred cCcee-ecCCcHHH-hhhhhhhhcccch--hhhc--Ch-hhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccc
Confidence 34454 56788888 9999999999999 7653 77 7889999999999999998 889999999999999999988
Q ss_pred Ccc
Q 036214 82 LTG 84 (90)
Q Consensus 82 l~~ 84 (90)
+..
T Consensus 114 l~e 116 (264)
T KOG0617|consen 114 LNE 116 (264)
T ss_pred ccc
Confidence 765
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.58 E-value=6.3e-09 Score=69.99 Aligned_cols=79 Identities=25% Similarity=0.280 Sum_probs=46.0
Q ss_pred CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214 3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL 82 (90)
Q Consensus 3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l 82 (90)
|.+....++.|.- .+.|++|+++.|. ++... +. .|.-+..|+.|.++.|++.......|..+++|+.|+++.|.+
T Consensus 303 NaI~rih~d~Wsf-tqkL~~LdLs~N~--i~~l~-~~-sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~l 377 (873)
T KOG4194|consen 303 NAIQRIHIDSWSF-TQKLKELDLSSNR--ITRLD-EG-SFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNEL 377 (873)
T ss_pred hhhheeecchhhh-cccceeEeccccc--cccCC-hh-HHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeE
Confidence 4444455555554 5566666666666 55443 44 555555666666666666533334556666777777777776
Q ss_pred cccC
Q 036214 83 TGSI 86 (90)
Q Consensus 83 ~~~~ 86 (90)
++.|
T Consensus 378 s~~I 381 (873)
T KOG4194|consen 378 SWCI 381 (873)
T ss_pred EEEE
Confidence 6654
No 8
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.57 E-value=1.7e-07 Score=42.84 Aligned_cols=36 Identities=33% Similarity=0.566 Sum_probs=20.2
Q ss_pred cccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCc
Q 036214 47 HLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLT 83 (90)
Q Consensus 47 ~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~ 83 (90)
+|+.+++++|+++ .+|..+.+|++|+.+++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555666666666 45555566666666666666655
No 9
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.56 E-value=8.1e-08 Score=46.69 Aligned_cols=52 Identities=25% Similarity=0.335 Sum_probs=41.1
Q ss_pred CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcC
Q 036214 2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDL 58 (90)
Q Consensus 2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~ 58 (90)
+|++....+..|.. +++|++|++++|. +.... +. .|..+++|+.+++++|++
T Consensus 10 ~n~l~~i~~~~f~~-l~~L~~L~l~~N~--l~~i~-~~-~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 10 NNKLTEIPPDSFSN-LPNLETLDLSNNN--LTSIP-PD-AFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp SSTESEECTTTTTT-GTTESEEEETSSS--ESEEE-TT-TTTTSTTESEEEETSSSB
T ss_pred CCCCCccCHHHHcC-CCCCCEeEccCCc--cCccC-HH-HHcCCCCCCEEeCcCCcC
Confidence 45566444445556 9999999999999 77654 55 899999999999999975
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.52 E-value=1.3e-07 Score=61.41 Aligned_cols=78 Identities=31% Similarity=0.414 Sum_probs=60.8
Q ss_pred CCcCCccchhHHHhhCCCCcEEeccCCcc---------------------ccccccchhhhhcCcccccEEEccCCcCCC
Q 036214 2 RSALNTSFLQSIGESMSSLKYLSLSGSTI---------------------GINSSMILDQGLCSLVHLQELYIASNDLRG 60 (90)
Q Consensus 2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~---------------------~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~ 60 (90)
.|++.-.+|.+++. +..|+.++++.|+- ++.... +. .+..+.+|..+|+..|.+.
T Consensus 443 ~NN~Ln~LP~e~~~-lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd-~~-~l~nm~nL~tLDL~nNdlq- 518 (565)
T KOG0472|consen 443 SNNLLNDLPEEMGS-LVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVD-PS-GLKNMRNLTTLDLQNNDLQ- 518 (565)
T ss_pred ccchhhhcchhhhh-hhhhheecccccccccchHHHhhHHHHHHHHhccccccccC-hH-HhhhhhhcceeccCCCchh-
Confidence 46676778888887 77788888776640 022222 33 5777888999999999999
Q ss_pred cchhhhhcCCCccEEeccCCcCc
Q 036214 61 SLPWCLANMTSLRILDVSYNQLT 83 (90)
Q Consensus 61 ~~p~~~~~l~~L~~l~l~~n~l~ 83 (90)
.+|..+++|.+|+++.+.+|+|.
T Consensus 519 ~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 519 QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hCChhhccccceeEEEecCCccC
Confidence 88999999999999999999987
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.41 E-value=9.5e-08 Score=64.52 Aligned_cols=64 Identities=20% Similarity=0.225 Sum_probs=40.6
Q ss_pred CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214 17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG 84 (90)
Q Consensus 17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~ 84 (90)
+..++.|+++.|+ +...- -. ++..++.|+.|++++|.+....+..+...++|++|++++|+++.
T Consensus 268 l~kme~l~L~~N~--l~~vn-~g-~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~ 331 (873)
T KOG4194|consen 268 LEKMEHLNLETNR--LQAVN-EG-WLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITR 331 (873)
T ss_pred ecccceeecccch--hhhhh-cc-cccccchhhhhccchhhhheeecchhhhcccceeEecccccccc
Confidence 6666677777666 44432 33 56666666667777776665556666666667777777666654
No 12
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.39 E-value=5.6e-07 Score=52.60 Aligned_cols=61 Identities=30% Similarity=0.435 Sum_probs=19.2
Q ss_pred CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhh-hcCCCccEEeccCCcCcc
Q 036214 17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCL-ANMTSLRILDVSYNQLTG 84 (90)
Q Consensus 17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~-~~l~~L~~l~l~~n~l~~ 84 (90)
+.+++.|++++|. +... . .+..++.|+.++++.|+++ .+...+ ..+++|+.|++++|++..
T Consensus 41 l~~L~~L~Ls~N~--I~~l---~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~ 102 (175)
T PF14580_consen 41 LDKLEVLDLSNNQ--ITKL---E-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISD 102 (175)
T ss_dssp -TT--EEE-TTS----S-----T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---S
T ss_pred hcCCCEEECCCCC--Cccc---c-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCC
Confidence 4556666666666 5442 2 4555666666666666666 333323 345666666666666543
No 13
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.30 E-value=4.7e-08 Score=57.34 Aligned_cols=70 Identities=26% Similarity=0.459 Sum_probs=35.8
Q ss_pred chhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCc
Q 036214 9 FLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLT 83 (90)
Q Consensus 9 ~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~ 83 (90)
+|..|+. ++.|++||+.+|. +.....|. .|..+..|+-+++++|.+. .+|.-++++++|+.+.+.+|.+-
T Consensus 94 lprgfgs-~p~levldltynn--l~e~~lpg-nff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll 163 (264)
T KOG0617|consen 94 LPRGFGS-FPALEVLDLTYNN--LNENSLPG-NFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL 163 (264)
T ss_pred CccccCC-Cchhhhhhccccc--cccccCCc-chhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh
Confidence 4555555 5556666665555 43332133 4444444444555555554 44555555555666555555543
No 14
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.24 E-value=3.8e-06 Score=38.37 Aligned_cols=40 Identities=25% Similarity=0.420 Sum_probs=32.2
Q ss_pred CCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcch
Q 036214 18 SSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLP 63 (90)
Q Consensus 18 ~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p 63 (90)
++|++|++++|. ++. + +. .+..+++|+.+++++|+++ .++
T Consensus 1 ~~L~~L~l~~N~--i~~-l-~~-~l~~l~~L~~L~l~~N~i~-~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQ--ITD-L-PP-ELSNLPNLETLNLSNNPIS-DIS 40 (44)
T ss_dssp TT-SEEEETSSS---SS-H-GG-HGTTCTTSSEEEETSSCCS-BEG
T ss_pred CcceEEEccCCC--Ccc-c-Cc-hHhCCCCCCEEEecCCCCC-CCc
Confidence 468999999999 775 3 55 6999999999999999998 554
No 15
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.18 E-value=4.4e-06 Score=48.87 Aligned_cols=68 Identities=31% Similarity=0.420 Sum_probs=32.0
Q ss_pred HHHhhCCCCcEEeccCCccccccccchhhhh-cCcccccEEEccCCcCCCcc-hhhhhcCCCccEEeccCCcCccc
Q 036214 12 SIGESMSSLKYLSLSGSTIGINSSMILDQGL-CSLVHLQELYIASNDLRGSL-PWCLANMTSLRILDVSYNQLTGS 85 (90)
Q Consensus 12 ~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~-~~l~~l~~l~l~~n~~~~~~-p~~~~~l~~L~~l~l~~n~l~~~ 85 (90)
.+.. ++.|+.|++++|. ++.. .. .+ ..+++|+.+++++|++...- -..+..+++|+.|++.+|+++..
T Consensus 59 ~l~~-L~~L~~L~L~~N~--I~~i--~~-~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~ 128 (175)
T PF14580_consen 59 GLPG-LPRLKTLDLSNNR--ISSI--SE-GLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK 128 (175)
T ss_dssp T-----TT--EEE--SS-----S---CH-HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred CccC-hhhhhhcccCCCC--CCcc--cc-chHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch
Confidence 4666 8899999999999 7654 22 33 35789999999999987311 14567889999999999998753
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.15 E-value=1.1e-06 Score=56.94 Aligned_cols=75 Identities=23% Similarity=0.260 Sum_probs=60.3
Q ss_pred cchhH-HHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcccC
Q 036214 8 SFLQS-IGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGSI 86 (90)
Q Consensus 8 ~~p~~-~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~~~ 86 (90)
..|.. |.. +++|+++++++|+ +++.. .. +|.....++.+.+..|++.......|.++..|+.|++.+|+++-..
T Consensus 264 ~cP~~cf~~-L~~L~~lnlsnN~--i~~i~-~~-aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~ 338 (498)
T KOG4237|consen 264 ICPAKCFKK-LPNLRKLNLSNNK--ITRIE-DG-AFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVA 338 (498)
T ss_pred cChHHHHhh-cccceEeccCCCc--cchhh-hh-hhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEe
Confidence 34433 555 9999999999999 77754 55 8999999999999999998555567889999999999999987654
Q ss_pred C
Q 036214 87 S 87 (90)
Q Consensus 87 p 87 (90)
|
T Consensus 339 ~ 339 (498)
T KOG4237|consen 339 P 339 (498)
T ss_pred c
Confidence 4
No 17
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.11 E-value=2.2e-06 Score=60.60 Aligned_cols=72 Identities=25% Similarity=0.319 Sum_probs=60.0
Q ss_pred cchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214 8 SFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG 84 (90)
Q Consensus 8 ~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~ 84 (90)
.++.+|+..++.|++||+++|. --+.. |. .++.+.+|++|++++..+. .+|..+.++..|.+|++..+.-..
T Consensus 561 ~is~~ff~~m~~LrVLDLs~~~--~l~~L-P~-~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~ 632 (889)
T KOG4658|consen 561 EISGEFFRSLPLLRVLDLSGNS--SLSKL-PS-SIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLE 632 (889)
T ss_pred hcCHHHHhhCcceEEEECCCCC--ccCcC-Ch-HHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccc
Confidence 3445545559999999999988 55566 87 8999999999999999999 999999999999999998765433
No 18
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.10 E-value=1.3e-06 Score=56.94 Aligned_cols=66 Identities=27% Similarity=0.273 Sum_probs=34.1
Q ss_pred HHHhhCCCCcEEeccCCccccccccchhhh-hcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214 12 SIGESMSSLKYLSLSGSTIGINSSMILDQG-LCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG 84 (90)
Q Consensus 12 ~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~-~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~ 84 (90)
+|.+ +..|.++++..|+ +... |. + ...+.++..+|+.+|+++ ++|..+..+.+|.++|+++|.+++
T Consensus 223 ef~g-cs~L~Elh~g~N~--i~~l--pa-e~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~ 289 (565)
T KOG0472|consen 223 EFPG-CSLLKELHVGENQ--IEML--PA-EHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISS 289 (565)
T ss_pred CCCc-cHHHHHHHhcccH--HHhh--HH-HHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCcccc
Confidence 4444 5555555555555 3322 33 2 234555555555555555 555555555555555555555554
No 19
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.06 E-value=6.7e-07 Score=61.33 Aligned_cols=74 Identities=26% Similarity=0.336 Sum_probs=59.2
Q ss_pred CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214 2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ 81 (90)
Q Consensus 2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~ 81 (90)
.|++. .+|+.+.. +++|+.|.+++|. ++..- . ......++.+|+++.|+++ .+|..+.+++.|+.|++.+|+
T Consensus 231 ~N~Lp-~vPecly~-l~~LrrLNLS~N~--iteL~-~--~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~Nk 302 (1255)
T KOG0444|consen 231 ENNLP-IVPECLYK-LRNLRRLNLSGNK--ITELN-M--TEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNK 302 (1255)
T ss_pred ccCCC-cchHHHhh-hhhhheeccCcCc--eeeee-c--cHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCc
Confidence 34444 67888888 9999999999999 66542 2 3445567899999999999 899999999999999998887
Q ss_pred Cc
Q 036214 82 LT 83 (90)
Q Consensus 82 l~ 83 (90)
+.
T Consensus 303 L~ 304 (1255)
T KOG0444|consen 303 LT 304 (1255)
T ss_pred cc
Confidence 43
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.02 E-value=5.5e-06 Score=57.91 Aligned_cols=60 Identities=27% Similarity=0.270 Sum_probs=44.2
Q ss_pred CCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcccCC
Q 036214 19 SLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGSIS 87 (90)
Q Consensus 19 ~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~~~p 87 (90)
+|+.|++++|. ++. + |. . ...|+.+++++|+++ .+|..+..+++|..+++++|++++.+|
T Consensus 403 ~L~~LdLS~N~--Lss-I-P~-l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 403 ELKELMVSGNR--LTS-L-PM-L---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred CCCEEEccCCc--CCC-C-Cc-c---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHH
Confidence 45566666666 443 2 33 2 235677888888888 788889999999999999999998754
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.95 E-value=1.6e-06 Score=60.93 Aligned_cols=64 Identities=33% Similarity=0.385 Sum_probs=35.0
Q ss_pred CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCc
Q 036214 3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSL 72 (90)
Q Consensus 3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L 72 (90)
|.+....-+-+.+ +.+|+.|++++|+ +... |.+.+..+..|+.|++++|+++ .+|..+..+..|
T Consensus 369 N~Ltd~c~p~l~~-~~hLKVLhLsyNr--L~~f--pas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L 432 (1081)
T KOG0618|consen 369 NHLTDSCFPVLVN-FKHLKVLHLSYNR--LNSF--PASKLRKLEELEELNLSGNKLT-TLPDTVANLGRL 432 (1081)
T ss_pred Ccccccchhhhcc-ccceeeeeecccc--cccC--CHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhh
Confidence 4444444444555 6667777777776 4433 4324566666666666666665 444444433333
No 22
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.89 E-value=4.1e-06 Score=53.11 Aligned_cols=61 Identities=30% Similarity=0.391 Sum_probs=46.1
Q ss_pred CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214 17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG 84 (90)
Q Consensus 17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~ 84 (90)
++.|+.+|+++|. ++.. .. ++.-.+.++.+++++|++. .+.. +..+++|+.|++++|.++.
T Consensus 283 Wq~LtelDLS~N~--I~~i--DE-SvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls~ 343 (490)
T KOG1259|consen 283 WQELTELDLSGNL--ITQI--DE-SVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLAE 343 (490)
T ss_pred Hhhhhhccccccc--hhhh--hh-hhhhccceeEEecccccee-eehh-hhhcccceEeecccchhHh
Confidence 4568888888888 6543 33 5666788888888888887 5544 7888888888888887765
No 23
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.85 E-value=9.5e-06 Score=55.95 Aligned_cols=71 Identities=24% Similarity=0.285 Sum_probs=44.6
Q ss_pred ccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchh-hhhcCCCccEEeccCCcCcc
Q 036214 7 TSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPW-CLANMTSLRILDVSYNQLTG 84 (90)
Q Consensus 7 ~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~-~~~~l~~L~~l~l~~n~l~~ 84 (90)
..+|++++. +.-|..||++.|+ +... |. .+..-.++..|++++|++. .+|. .+-++..|..|++++|.+..
T Consensus 93 sGiP~diF~-l~dLt~lDLShNq--L~Ev--P~-~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~ 164 (1255)
T KOG0444|consen 93 SGIPTDIFR-LKDLTILDLSHNQ--LREV--PT-NLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEM 164 (1255)
T ss_pred CCCCchhcc-cccceeeecchhh--hhhc--ch-hhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhhh
Confidence 346777777 7777777777777 5543 55 5555566666666766666 4443 34466666666666666553
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.85 E-value=5.6e-06 Score=53.83 Aligned_cols=77 Identities=16% Similarity=0.151 Sum_probs=65.3
Q ss_pred CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214 2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ 81 (90)
Q Consensus 2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~ 81 (90)
+|++++.-+.+|.+ ...+++|++..|+ +...- -. .|..+..|+.|++.+|+++-..|..|..+.+|..+.+-.|.
T Consensus 283 nN~i~~i~~~aFe~-~a~l~eL~L~~N~--l~~v~-~~-~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 283 NNKITRIEDGAFEG-AAELQELYLTRNK--LEFVS-SG-MFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred CCccchhhhhhhcc-hhhhhhhhcCcch--HHHHH-HH-hhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 67788777777777 9999999999999 66543 34 68899999999999999998888899999999999998887
Q ss_pred Cc
Q 036214 82 LT 83 (90)
Q Consensus 82 l~ 83 (90)
+.
T Consensus 358 ~~ 359 (498)
T KOG4237|consen 358 FN 359 (498)
T ss_pred cc
Confidence 63
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.83 E-value=4.2e-05 Score=47.68 Aligned_cols=13 Identities=38% Similarity=0.634 Sum_probs=6.0
Q ss_pred CCccEEeccCCcC
Q 036214 70 TSLRILDVSYNQL 82 (90)
Q Consensus 70 ~~L~~l~l~~n~l 82 (90)
++|+.+++++|.+
T Consensus 193 ~~L~~L~L~~n~i 205 (319)
T cd00116 193 CNLEVLDLNNNGL 205 (319)
T ss_pred CCCCEEeccCCcc
Confidence 3444444444443
No 26
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.79 E-value=7.9e-05 Score=54.21 Aligned_cols=74 Identities=18% Similarity=0.229 Sum_probs=41.9
Q ss_pred chhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcccCCC
Q 036214 9 FLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGSISL 88 (90)
Q Consensus 9 ~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~ 88 (90)
+++.+.. +++|+.++++++. .-..+ | .+..+++|+.|++++|.....+|..+..+++|+.|++++|...+.+|.
T Consensus 626 L~~~~~~-l~~Lk~L~Ls~~~--~l~~i-p--~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~ 699 (1153)
T PLN03210 626 LWDGVHS-LTGLRNIDLRGSK--NLKEI-P--DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT 699 (1153)
T ss_pred ccccccc-CCCCCEEECCCCC--CcCcC-C--ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCC
Confidence 3444444 6666666666554 22322 2 345556666777666544346666666667777777766554444443
No 27
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.77 E-value=4e-06 Score=59.05 Aligned_cols=71 Identities=35% Similarity=0.497 Sum_probs=48.9
Q ss_pred ccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214 7 TSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG 84 (90)
Q Consensus 7 ~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~ 84 (90)
+.+|+.....+..|+.|++++|. ++. + |. ....+..|+++...+|++. .+| .+..++.|+.+|++.|+++.
T Consensus 396 ~~fpas~~~kle~LeeL~LSGNk--L~~-L-p~-tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 396 NSFPASKLRKLEELEELNLSGNK--LTT-L-PD-TVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSE 466 (1081)
T ss_pred ccCCHHHHhchHHhHHHhcccch--hhh-h-hH-HHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhh
Confidence 35666655557778888888888 654 3 65 6667777777777777776 666 56667777777777776654
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.71 E-value=5.5e-05 Score=47.15 Aligned_cols=38 Identities=26% Similarity=0.392 Sum_probs=18.9
Q ss_pred ccccEEEccCCcCCC----cchhhhhcCCCccEEeccCCcCc
Q 036214 46 VHLQELYIASNDLRG----SLPWCLANMTSLRILDVSYNQLT 83 (90)
Q Consensus 46 ~~l~~l~l~~n~~~~----~~p~~~~~l~~L~~l~l~~n~l~ 83 (90)
++|+.+++++|.+++ .++..+..+..|+.+++++|.+.
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG 178 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence 455555555555542 12223344445555555555554
No 29
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.68 E-value=0.00022 Score=51.97 Aligned_cols=77 Identities=17% Similarity=0.361 Sum_probs=48.8
Q ss_pred cCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCc---------------------ccccEEEccCCcCCCcc
Q 036214 4 ALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSL---------------------VHLQELYIASNDLRGSL 62 (90)
Q Consensus 4 ~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l---------------------~~l~~l~l~~n~~~~~~ 62 (90)
...+.+|..+.. +++|+.|++++|. .-+.+ |. .. .+ .+++.|++++|.+. .+
T Consensus 789 ~~l~~lP~si~~-L~~L~~L~Ls~C~--~L~~L-P~-~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~-~i 861 (1153)
T PLN03210 789 PSLVELPSSIQN-LHKLEHLEIENCI--NLETL-PT-GI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE-EV 861 (1153)
T ss_pred CCccccChhhhC-CCCCCEEECCCCC--CcCee-CC-CC-CccccCEEECCCCCccccccccccccCEeECCCCCCc-cC
Confidence 345567777777 8888888888764 22223 32 11 22 34566666667776 67
Q ss_pred hhhhhcCCCccEEeccCCcCcccCC
Q 036214 63 PWCLANMTSLRILDVSYNQLTGSIS 87 (90)
Q Consensus 63 p~~~~~l~~L~~l~l~~n~l~~~~p 87 (90)
|..+..+++|+.|++++|+--..+|
T Consensus 862 P~si~~l~~L~~L~L~~C~~L~~l~ 886 (1153)
T PLN03210 862 PWWIEKFSNLSFLDMNGCNNLQRVS 886 (1153)
T ss_pred hHHHhcCCCCCEEECCCCCCcCccC
Confidence 7788888888888888754333344
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.60 E-value=1.8e-05 Score=53.59 Aligned_cols=67 Identities=27% Similarity=0.438 Sum_probs=45.3
Q ss_pred hhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214 10 LQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG 84 (90)
Q Consensus 10 p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~ 84 (90)
|..+.+ +.+|+.|.+..|+ +... |. ++..++ |..+|++.|++. .+|-.|.+|..|+++-|++|.+++
T Consensus 182 psql~~-l~slr~l~vrRn~--l~~l--p~-El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 182 PSQLGY-LTSLRDLNVRRNH--LEDL--PE-ELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred hHHhhh-HHHHHHHHHhhhh--hhhC--CH-HHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC
Confidence 333444 4444555555555 4332 44 444443 678899999998 888889999999999999998875
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.56 E-value=5.5e-05 Score=48.18 Aligned_cols=66 Identities=23% Similarity=0.258 Sum_probs=43.8
Q ss_pred cchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214 8 SFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ 81 (90)
Q Consensus 8 ~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~ 81 (90)
.+.+...- ++.++.|+++.|. +.. .+ .+..+.+|+.+|+++|.++ ....+-.++-+.+.|.++.|.
T Consensus 298 ~iDESvKL-~Pkir~L~lS~N~--i~~---v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~ 363 (490)
T KOG1259|consen 298 QIDESVKL-APKLRRLILSQNR--IRT---VQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNK 363 (490)
T ss_pred hhhhhhhh-ccceeEEeccccc--eee---eh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhh
Confidence 34445555 6788999999998 554 33 5778888899999998877 444444445555555555543
No 32
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.52 E-value=1.6e-05 Score=45.18 Aligned_cols=61 Identities=26% Similarity=0.341 Sum_probs=36.6
Q ss_pred CCCcEEeccCCccccccccchhhhhcCc-ccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214 18 SSLKYLSLSGSTIGINSSMILDQGLCSL-VHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG 84 (90)
Q Consensus 18 ~~l~~L~l~~n~~~~~~~~~~~~~~~~l-~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~ 84 (90)
..|..+++++|. +... |. .|... +..+.++++.|.++ .+|..+..++.|+.++++.|.+.-
T Consensus 53 ~el~~i~ls~N~--fk~f--p~-kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~ 114 (177)
T KOG4579|consen 53 YELTKISLSDNG--FKKF--PK-KFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNA 114 (177)
T ss_pred ceEEEEecccch--hhhC--CH-HHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCcccc
Confidence 345556666666 5543 44 33332 35666666767666 666666666667777776666543
No 33
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.50 E-value=0.0004 Score=48.79 Aligned_cols=35 Identities=34% Similarity=0.394 Sum_probs=17.0
Q ss_pred cccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214 47 HLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG 84 (90)
Q Consensus 47 ~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~ 84 (90)
.|+.|+++.|+++ .+|..+. .+|+.|++++|++++
T Consensus 263 ~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~ 297 (754)
T PRK15370 263 ALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT 297 (754)
T ss_pred CCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc
Confidence 3455555555554 3443322 245555666555553
No 34
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.36 E-value=0.00056 Score=48.07 Aligned_cols=68 Identities=24% Similarity=0.339 Sum_probs=41.2
Q ss_pred CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214 3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL 82 (90)
Q Consensus 3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l 82 (90)
|++. .+|..+. .+|+.|++++|. ++. + |. .+. .+|+.+++++|.+. .+|..+. .+|+.|++++|++
T Consensus 209 N~Lt-sLP~~l~---~nL~~L~Ls~N~--Lts-L-P~-~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L 274 (754)
T PRK15370 209 NELK-SLPENLQ---GNIKTLYANSNQ--LTS-I-PA-TLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKI 274 (754)
T ss_pred CCCC-cCChhhc---cCCCEEECCCCc--ccc-C-Ch-hhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCcc
Confidence 4444 4555443 367777777777 554 3 44 332 35777777777776 5665543 3677777777776
Q ss_pred cc
Q 036214 83 TG 84 (90)
Q Consensus 83 ~~ 84 (90)
..
T Consensus 275 ~~ 276 (754)
T PRK15370 275 SC 276 (754)
T ss_pred Cc
Confidence 63
No 35
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.26 E-value=8.3e-05 Score=42.36 Aligned_cols=72 Identities=21% Similarity=0.288 Sum_probs=59.1
Q ss_pred CccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCc
Q 036214 6 NTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLT 83 (90)
Q Consensus 6 ~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~ 83 (90)
...+|+.|...++.++.+.++.|. ++.. |. ++..++.|+.++++.|.+. ..|+.+..+.++..|+..+|...
T Consensus 65 fk~fp~kft~kf~t~t~lNl~~ne--isdv--Pe-E~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 65 FKKFPKKFTIKFPTATTLNLANNE--ISDV--PE-ELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred hhhCCHHHhhccchhhhhhcchhh--hhhc--hH-HHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 346777877756788999999999 7754 87 8889999999999999998 77888888888888888777654
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.12 E-value=0.00028 Score=45.57 Aligned_cols=60 Identities=38% Similarity=0.484 Sum_probs=35.9
Q ss_pred CCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214 19 SLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG 84 (90)
Q Consensus 19 ~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~ 84 (90)
+|+.|++++|. +... +. ....++.|+.++++.|.+. .+|.....++.|..+++++|++..
T Consensus 141 nL~~L~l~~N~--i~~l--~~-~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~~ 200 (394)
T COG4886 141 NLKELDLSDNK--IESL--PS-PLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISD 200 (394)
T ss_pred hcccccccccc--hhhh--hh-hhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCcccc
Confidence 56666666666 4432 33 4556666666666666666 555544455666666666666554
No 37
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.12 E-value=8.9e-05 Score=46.68 Aligned_cols=69 Identities=38% Similarity=0.382 Sum_probs=56.8
Q ss_pred HHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchh--hhhcCCCccEEeccCCcCcccCCC
Q 036214 13 IGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPW--CLANMTSLRILDVSYNQLTGSISL 88 (90)
Q Consensus 13 ~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~--~~~~l~~L~~l~l~~n~l~~~~p~ 88 (90)
+..+|+.|++|.|+-|. ++... .+..++.|+.++|..|.+. .+.+ .+.++++|+.|.+..|...|.-+.
T Consensus 36 ic~kMp~lEVLsLSvNk--IssL~----pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~~ag~ 106 (388)
T KOG2123|consen 36 ICEKMPLLEVLSLSVNK--ISSLA----PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCGEAGQ 106 (388)
T ss_pred HHHhcccceeEEeeccc--cccch----hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcccccch
Confidence 44559999999999999 77643 5778899999999999998 5554 467899999999999998886554
No 38
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.02 E-value=0.00039 Score=42.91 Aligned_cols=65 Identities=22% Similarity=0.219 Sum_probs=33.5
Q ss_pred CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCC-cchhhhhcCCCccEEeccCCcCc
Q 036214 17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRG-SLPWCLANMTSLRILDVSYNQLT 83 (90)
Q Consensus 17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~-~~p~~~~~l~~L~~l~l~~n~l~ 83 (90)
++.|++|+++.|..+..+.. .. ....+++|+++.++.|+++. +.-.....+.+|..|++.+|..+
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l-~v-l~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGL-EV-LAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred cchhhhhcccCCcccccccc-ee-hhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcc
Confidence 55666777776621133333 22 23344667777777776652 00112334455666666666544
No 39
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.96 E-value=0.00011 Score=51.46 Aligned_cols=59 Identities=29% Similarity=0.385 Sum_probs=32.0
Q ss_pred CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214 17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL 82 (90)
Q Consensus 17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l 82 (90)
+++++.|+|+.|+ +.. .+ .+..++.|+.||+++|++. .+|..-..-..|..|.+++|-+
T Consensus 186 l~ale~LnLshNk--~~~---v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l 244 (1096)
T KOG1859|consen 186 LPALESLNLSHNK--FTK---VD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNAL 244 (1096)
T ss_pred HHHhhhhccchhh--hhh---hH-HHHhcccccccccccchhc-cccccchhhhhheeeeecccHH
Confidence 4566667777777 553 22 5666667777777777666 4444221111244444444443
No 40
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=96.93 E-value=8.3e-05 Score=50.53 Aligned_cols=72 Identities=32% Similarity=0.368 Sum_probs=50.7
Q ss_pred CCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214 5 LNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG 84 (90)
Q Consensus 5 ~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~ 84 (90)
-.+.+|+++.. ...+..||.+.|. +... |. .+..+..|+.+.+..|.+. .+|+.+..++ |..||++.|++..
T Consensus 154 kl~~lp~~ig~-~~tl~~ld~s~ne--i~sl--ps-ql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis~ 225 (722)
T KOG0532|consen 154 KLTSLPEEIGL-LPTLAHLDVSKNE--IQSL--PS-QLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKISY 225 (722)
T ss_pred ccccCCccccc-chhHHHhhhhhhh--hhhc--hH-HhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCceee
Confidence 33466777765 7777777777777 4442 55 6777777777777888777 6677676555 7888888888764
No 41
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.93 E-value=0.00065 Score=41.95 Aligned_cols=61 Identities=21% Similarity=0.344 Sum_probs=47.4
Q ss_pred CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCC--cCCCcchhhhhcCCCccEEeccCCcCc
Q 036214 17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASN--DLRGSLPWCLANMTSLRILDVSYNQLT 83 (90)
Q Consensus 17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n--~~~~~~p~~~~~l~~L~~l~l~~n~l~ 83 (90)
+..++.+.+.... ++... .+..++.|+.|.++.| ++.+.++-....+++|+++.+++|++.
T Consensus 42 ~~~le~ls~~n~g--ltt~~----~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 42 FVELELLSVINVG--LTTLT----NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred ccchhhhhhhccc--eeecc----cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 4556677666666 65432 6788899999999999 666677666777899999999999876
No 42
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.90 E-value=0.00061 Score=26.30 Aligned_cols=17 Identities=35% Similarity=0.544 Sum_probs=7.8
Q ss_pred ccEEEccCCcCCCcchhh
Q 036214 48 LQELYIASNDLRGSLPWC 65 (90)
Q Consensus 48 l~~l~l~~n~~~~~~p~~ 65 (90)
|+++++++|+++ .+|..
T Consensus 2 L~~Ldls~n~l~-~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSS 18 (22)
T ss_dssp ESEEEETSSEES-EEGTT
T ss_pred ccEEECCCCcCE-eCChh
Confidence 344444444444 44433
No 43
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=96.78 E-value=0.0035 Score=44.41 Aligned_cols=41 Identities=15% Similarity=0.259 Sum_probs=18.9
Q ss_pred cchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCC
Q 036214 8 SFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLR 59 (90)
Q Consensus 8 ~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~ 59 (90)
.+|+.+.. +++.|++..|. ++. + |. .+++|+.|++++|+++
T Consensus 215 sLP~~l~~---~L~~L~L~~N~--Lt~-L-P~----lp~~Lk~LdLs~N~Lt 255 (788)
T PRK15387 215 TLPDCLPA---HITTLVIPDNN--LTS-L-PA----LPPELRTLEVSGNQLT 255 (788)
T ss_pred cCCcchhc---CCCEEEccCCc--CCC-C-CC----CCCCCcEEEecCCccC
Confidence 45554432 45555555555 433 1 22 1234555555555544
No 44
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.73 E-value=0.0012 Score=47.22 Aligned_cols=71 Identities=31% Similarity=0.431 Sum_probs=58.2
Q ss_pred CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccC
Q 036214 3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSY 79 (90)
Q Consensus 3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~ 79 (90)
|.-.+.+|..++. +-+|++|++++.. +.. . |. .+..+..|.+|++..+.....+|.....|.+|+++.+..
T Consensus 581 ~~~l~~LP~~I~~-Li~LryL~L~~t~--I~~-L-P~-~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 581 NSSLSKLPSSIGE-LVHLRYLDLSDTG--ISH-L-PS-GLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred CCccCcCChHHhh-hhhhhcccccCCC--ccc-c-ch-HHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 3345678999999 9999999999999 664 4 88 899999999999998876546667677799999988754
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.69 E-value=0.00098 Score=43.68 Aligned_cols=38 Identities=37% Similarity=0.411 Sum_probs=15.8
Q ss_pred cCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214 43 CSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL 82 (90)
Q Consensus 43 ~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l 82 (90)
..+.+|++++++.|.++ .+ ..+..+..|+.|++++|.+
T Consensus 115 ~~~~~L~~L~ls~N~I~-~i-~~l~~l~~L~~L~l~~N~i 152 (414)
T KOG0531|consen 115 SSLVNLQVLDLSFNKIT-KL-EGLSTLTLLKELNLSGNLI 152 (414)
T ss_pred hhhhcchheeccccccc-cc-cchhhccchhhheeccCcc
Confidence 33444444444444444 22 1233333344444444443
No 46
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.66 E-value=0.0032 Score=38.00 Aligned_cols=58 Identities=21% Similarity=0.294 Sum_probs=31.6
Q ss_pred CcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCc
Q 036214 20 LKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLT 83 (90)
Q Consensus 20 l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~ 83 (90)
...+||+.|. +.. .. .+..+..|.+|.+..|+++..-|..-..+++|+.|.+.+|++.
T Consensus 44 ~d~iDLtdNd--l~~---l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 44 FDAIDLTDND--LRK---LD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ 101 (233)
T ss_pred cceecccccc--hhh---cc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence 3445666666 332 12 4555666666666666666444444444555666666666554
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.60 E-value=0.00084 Score=43.99 Aligned_cols=64 Identities=31% Similarity=0.513 Sum_probs=48.4
Q ss_pred HHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCccc
Q 036214 13 IGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGS 85 (90)
Q Consensus 13 ~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~~ 85 (90)
+.. +++|++|++++|. ++... .+..+..|+.|++++|.++ .+. .+..+..|+.+++++|.+...
T Consensus 114 l~~-~~~L~~L~ls~N~--I~~i~----~l~~l~~L~~L~l~~N~i~-~~~-~~~~l~~L~~l~l~~n~i~~i 177 (414)
T KOG0531|consen 114 LSS-LVNLQVLDLSFNK--ITKLE----GLSTLTLLKELNLSGNLIS-DIS-GLESLKSLKLLDLSYNRIVDI 177 (414)
T ss_pred hhh-hhcchheeccccc--ccccc----chhhccchhhheeccCcch-hcc-CCccchhhhcccCCcchhhhh
Confidence 344 7889999999999 76543 4566777899999999988 443 355578888999998887654
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.52 E-value=0.00056 Score=48.09 Aligned_cols=73 Identities=27% Similarity=0.353 Sum_probs=50.2
Q ss_pred CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214 2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ 81 (90)
Q Consensus 2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~ 81 (90)
+|++... +.+.. ++.|+.||+++|. +... |.-....+. |+.|.+++|.++ .+ ..+.++.+|..||+++|-
T Consensus 196 hNk~~~v--~~Lr~-l~~LkhLDlsyN~--L~~v--p~l~~~gc~-L~~L~lrnN~l~-tL-~gie~LksL~~LDlsyNl 265 (1096)
T KOG1859|consen 196 HNKFTKV--DNLRR-LPKLKHLDLSYNC--LRHV--PQLSMVGCK-LQLLNLRNNALT-TL-RGIENLKSLYGLDLSYNL 265 (1096)
T ss_pred hhhhhhh--HHHHh-cccccccccccch--hccc--cccchhhhh-heeeeecccHHH-hh-hhHHhhhhhhccchhHhh
Confidence 3455433 25666 9999999999999 5543 331233333 888888988887 33 457778888888888887
Q ss_pred Ccc
Q 036214 82 LTG 84 (90)
Q Consensus 82 l~~ 84 (90)
+.+
T Consensus 266 l~~ 268 (1096)
T KOG1859|consen 266 LSE 268 (1096)
T ss_pred hhc
Confidence 654
No 49
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.48 E-value=0.0016 Score=42.11 Aligned_cols=67 Identities=27% Similarity=0.354 Sum_probs=52.3
Q ss_pred cchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214 8 SFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ 81 (90)
Q Consensus 8 ~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~ 81 (90)
.+|..+.. ++.|+.|+++.|. +... +. .......++.+++++|++. .+|........|+.+.+++|.
T Consensus 154 ~l~~~~~~-l~~L~~L~l~~N~--l~~l--~~-~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 154 SLPSPLRN-LPNLKNLDLSFND--LSDL--PK-LLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred hhhhhhhc-cccccccccCCch--hhhh--hh-hhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCc
Confidence 44455667 8999999999999 6653 44 3447888999999999999 778776666778888888884
No 50
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.98 E-value=0.0067 Score=42.57 Aligned_cols=49 Identities=22% Similarity=0.371 Sum_probs=31.4
Q ss_pred cchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCC
Q 036214 8 SFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLR 59 (90)
Q Consensus 8 ~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~ 59 (90)
..|..++.-+|+|+.|.+++-. +.....-. .+.++++|..||+++.+++
T Consensus 138 ~W~~kig~~LPsL~sL~i~~~~--~~~~dF~~-lc~sFpNL~sLDIS~TnI~ 186 (699)
T KOG3665|consen 138 GWPKKIGTMLPSLRSLVISGRQ--FDNDDFSQ-LCASFPNLRSLDISGTNIS 186 (699)
T ss_pred cHHHHHhhhCcccceEEecCce--ecchhHHH-HhhccCccceeecCCCCcc
Confidence 4455555557788888777766 44332122 4567777888888887776
No 51
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.89 E-value=0.011 Score=35.71 Aligned_cols=63 Identities=24% Similarity=0.198 Sum_probs=41.4
Q ss_pred CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchh--hhhcCCCccEEeccCCcCcc
Q 036214 17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPW--CLANMTSLRILDVSYNQLTG 84 (90)
Q Consensus 17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~--~~~~l~~L~~l~l~~n~l~~ 84 (90)
++.|.+|.+..|. ++... |. --..++.+..|.+.+|.+. .+.+ .+..++.|+.|.+-+|+.+.
T Consensus 63 l~rL~tLll~nNr--It~I~-p~-L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Ltll~Npv~~ 127 (233)
T KOG1644|consen 63 LPRLHTLLLNNNR--ITRID-PD-LDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLTLLGNPVEH 127 (233)
T ss_pred ccccceEEecCCc--ceeec-cc-hhhhccccceEEecCcchh-hhhhcchhccCCccceeeecCCchhc
Confidence 6677788888888 66544 54 3445567788888888776 3332 34566777777777776553
No 52
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=95.82 E-value=0.012 Score=38.19 Aligned_cols=66 Identities=24% Similarity=0.238 Sum_probs=30.7
Q ss_pred CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCC----cchhhhhcCCCccEEeccCCcC
Q 036214 17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRG----SLPWCLANMTSLRILDVSYNQL 82 (90)
Q Consensus 17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~----~~p~~~~~l~~L~~l~l~~n~l 82 (90)
.+.|+.+.+..|.|+..|.......+..+++|+.||+.+|.++. .+...+..+++|+.+++++|.+
T Consensus 184 ~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll 253 (382)
T KOG1909|consen 184 HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL 253 (382)
T ss_pred ccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc
Confidence 44555555555553333321011134455555666666655542 1222334445555555555544
No 53
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=95.68 E-value=0.0035 Score=41.64 Aligned_cols=13 Identities=31% Similarity=0.514 Sum_probs=6.5
Q ss_pred CCccEEeccCCcC
Q 036214 70 TSLRILDVSYNQL 82 (90)
Q Consensus 70 ~~L~~l~l~~n~l 82 (90)
++|+.|++..|++
T Consensus 301 ~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 301 PKLEYLNISENNI 313 (505)
T ss_pred ccceeeecccCcc
Confidence 4455555555544
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.61 E-value=0.014 Score=37.46 Aligned_cols=60 Identities=23% Similarity=0.325 Sum_probs=29.5
Q ss_pred CCCCcEEeccCCccccccccchhhhh-cCcccccEEEccCCcCCCcch-hhhhcCCCccEEeccCCc
Q 036214 17 MSSLKYLSLSGSTIGINSSMILDQGL-CSLVHLQELYIASNDLRGSLP-WCLANMTSLRILDVSYNQ 81 (90)
Q Consensus 17 l~~l~~L~l~~n~~~~~~~~~~~~~~-~~l~~l~~l~l~~n~~~~~~p-~~~~~l~~L~~l~l~~n~ 81 (90)
++.|+.|.++.|. +...+ . .. ..+.+++++.+-+..+.+.-- ..+..++.+++++++.|+
T Consensus 96 lP~l~~LNls~N~--L~s~I--~-~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 96 LPALTTLNLSCNS--LSSDI--K-SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred CccceEeeccCCc--CCCcc--c-cCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccch
Confidence 5566666666666 44432 1 22 234455555555555443221 233445555666666653
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.14 E-value=0.018 Score=36.98 Aligned_cols=65 Identities=23% Similarity=0.277 Sum_probs=33.3
Q ss_pred CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCc
Q 036214 17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLT 83 (90)
Q Consensus 17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~ 83 (90)
.+.++++|+.+|. ++...+..+-+..++.+++++++.|.+...+...-....+|+.+-+.+..+.
T Consensus 70 ~~~v~elDL~~N~--iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~ 134 (418)
T KOG2982|consen 70 VTDVKELDLTGNL--ISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLS 134 (418)
T ss_pred hhhhhhhhcccch--hccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCC
Confidence 4556666666666 4433211112455666666666666665433222223445666655544443
No 56
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=94.95 E-value=0.012 Score=39.24 Aligned_cols=35 Identities=31% Similarity=0.428 Sum_probs=14.8
Q ss_pred ccccEEEccCCcCCCcch-hhhhcCCCccEEeccCC
Q 036214 46 VHLQELYIASNDLRGSLP-WCLANMTSLRILDVSYN 80 (90)
Q Consensus 46 ~~l~~l~l~~n~~~~~~p-~~~~~l~~L~~l~l~~n 80 (90)
.+++.|.+++|++++.-- .....+++|+.|+++.|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEAN 232 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcc
Confidence 444445555554443211 22233444444544444
No 57
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=94.89 E-value=0.035 Score=36.06 Aligned_cols=71 Identities=25% Similarity=0.314 Sum_probs=45.9
Q ss_pred hHHHhhCCCCcEEeccCCcccccccc--chhhhhcCcccccEEEccCCcCCCcch----hhh-hcCCCccEEeccCCcCc
Q 036214 11 QSIGESMSSLKYLSLSGSTIGINSSM--ILDQGLCSLVHLQELYIASNDLRGSLP----WCL-ANMTSLRILDVSYNQLT 83 (90)
Q Consensus 11 ~~~~~~l~~l~~L~l~~n~~~~~~~~--~~~~~~~~l~~l~~l~l~~n~~~~~~p----~~~-~~l~~L~~l~l~~n~l~ 83 (90)
..+.. +++|++||+..|. ++... .....+..+++|+.++++++.+...-. ..+ ...++|+.+.+.+|.++
T Consensus 207 eal~~-~~~LevLdl~DNt--ft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 207 EALEH-CPHLEVLDLRDNT--FTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred HHHHh-CCcceeeecccch--hhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 34555 8899999999998 55322 011146667788888888887764222 222 23567888888888765
Q ss_pred c
Q 036214 84 G 84 (90)
Q Consensus 84 ~ 84 (90)
.
T Consensus 284 ~ 284 (382)
T KOG1909|consen 284 R 284 (382)
T ss_pred H
Confidence 3
No 58
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.73 E-value=0.082 Score=20.77 Aligned_cols=13 Identities=38% Similarity=0.636 Sum_probs=7.0
Q ss_pred cccEEEccCCcCC
Q 036214 47 HLQELYIASNDLR 59 (90)
Q Consensus 47 ~l~~l~l~~n~~~ 59 (90)
+|+.+++++|.+.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4455555555555
No 59
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.73 E-value=0.082 Score=20.77 Aligned_cols=13 Identities=38% Similarity=0.636 Sum_probs=7.0
Q ss_pred cccEEEccCCcCC
Q 036214 47 HLQELYIASNDLR 59 (90)
Q Consensus 47 ~l~~l~l~~n~~~ 59 (90)
+|+.+++++|.+.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4455555555555
No 60
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=92.64 E-value=0.046 Score=21.15 Aligned_cols=11 Identities=36% Similarity=0.492 Sum_probs=4.2
Q ss_pred CCcEEeccCCc
Q 036214 19 SLKYLSLSGST 29 (90)
Q Consensus 19 ~l~~L~l~~n~ 29 (90)
+|+.|++++|.
T Consensus 3 ~L~~L~l~~n~ 13 (24)
T PF13516_consen 3 NLETLDLSNNQ 13 (24)
T ss_dssp T-SEEE-TSSB
T ss_pred CCCEEEccCCc
Confidence 34444444444
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=92.33 E-value=0.12 Score=36.57 Aligned_cols=57 Identities=33% Similarity=0.505 Sum_probs=31.0
Q ss_pred hCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcch--hhhhcCCCccEEeccC
Q 036214 16 SMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLP--WCLANMTSLRILDVSY 79 (90)
Q Consensus 16 ~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p--~~~~~l~~L~~l~l~~ 79 (90)
.+++|+.||+++.. ++.. . .+..+++|+.|.+..=.+. ... ..+.++++|+.||+|.
T Consensus 171 sFpNL~sLDIS~Tn--I~nl---~-GIS~LknLq~L~mrnLe~e-~~~~l~~LF~L~~L~vLDIS~ 229 (699)
T KOG3665|consen 171 SFPNLRSLDISGTN--ISNL---S-GISRLKNLQVLSMRNLEFE-SYQDLIDLFNLKKLRVLDISR 229 (699)
T ss_pred ccCccceeecCCCC--ccCc---H-HHhccccHHHHhccCCCCC-chhhHHHHhcccCCCeeeccc
Confidence 37889999999887 5532 1 4455555555544433333 111 1233455555555554
No 62
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=90.45 E-value=0.23 Score=32.20 Aligned_cols=65 Identities=23% Similarity=0.211 Sum_probs=43.2
Q ss_pred hHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhh---hhcCCCccEEeccCC
Q 036214 11 QSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWC---LANMTSLRILDVSYN 80 (90)
Q Consensus 11 ~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~---~~~l~~L~~l~l~~n 80 (90)
..+..+++++..||++.|.- ++... .. .+..++.|+++.++.++. ..|+. +..+++|.+|++.++
T Consensus 306 ~tL~~rcp~l~~LDLSD~v~-l~~~~-~~-~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 306 STLVRRCPNLVHLDLSDSVM-LKNDC-FQ-EFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HHHHHhCCceeeeccccccc-cCchH-HH-HHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 34555689999999998761 33322 33 677788888888877763 34554 456678888877554
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.83 E-value=0.023 Score=36.19 Aligned_cols=60 Identities=22% Similarity=0.206 Sum_probs=46.2
Q ss_pred CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214 17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG 84 (90)
Q Consensus 17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~ 84 (90)
+..+++|++-++. +... . -+..++.|+.+.|+.|.++ .+ ..+..|++|++|+|..|.+..
T Consensus 18 l~~vkKLNcwg~~--L~DI---s-ic~kMp~lEVLsLSvNkIs-sL-~pl~rCtrLkElYLRkN~I~s 77 (388)
T KOG2123|consen 18 LENVKKLNCWGCG--LDDI---S-ICEKMPLLEVLSLSVNKIS-SL-APLQRCTRLKELYLRKNCIES 77 (388)
T ss_pred HHHhhhhcccCCC--ccHH---H-HHHhcccceeEEeeccccc-cc-hhHHHHHHHHHHHHHhccccc
Confidence 4467778887888 6543 2 4567888999999999998 44 347788999999999998754
No 64
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=89.41 E-value=0.42 Score=19.14 Aligned_cols=14 Identities=43% Similarity=0.579 Sum_probs=8.2
Q ss_pred CCccEEeccCCcCc
Q 036214 70 TSLRILDVSYNQLT 83 (90)
Q Consensus 70 ~~L~~l~l~~n~l~ 83 (90)
.+|+.|+++.|.++
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34566666666654
No 65
>PRK15386 type III secretion protein GogB; Provisional
Probab=89.17 E-value=1.5 Score=29.50 Aligned_cols=53 Identities=23% Similarity=0.190 Sum_probs=28.8
Q ss_pred CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCC-cCCCcchhhhhcCCCccEEeccCC
Q 036214 17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASN-DLRGSLPWCLANMTSLRILDVSYN 80 (90)
Q Consensus 17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n-~~~~~~p~~~~~l~~L~~l~l~~n 80 (90)
+.++..|++++|. +... |. -..+|+.|.++++ .++ .+|..+. .+|+.|.+++|
T Consensus 51 ~~~l~~L~Is~c~--L~sL--P~----LP~sLtsL~Lsnc~nLt-sLP~~LP--~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCD--IESL--PV----LPNELTEITIENCNNLT-TLPGSIP--EGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCC--Cccc--CC----CCCCCcEEEccCCCCcc-cCCchhh--hhhhheEccCc
Confidence 6677788888776 5432 21 1234666666653 333 4444332 35666666665
No 66
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.02 E-value=0.15 Score=30.92 Aligned_cols=59 Identities=25% Similarity=0.317 Sum_probs=31.3
Q ss_pred CCCCcEEeccCCccccccccchhhhhcC-cccccEEEccCC-cCCCcchhhhhcCCCccEEecc
Q 036214 17 MSSLKYLSLSGSTIGINSSMILDQGLCS-LVHLQELYIASN-DLRGSLPWCLANMTSLRILDVS 78 (90)
Q Consensus 17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~-l~~l~~l~l~~n-~~~~~~p~~~~~l~~L~~l~l~ 78 (90)
++.++.|.+..+. -.+..-.. .+.. .++|+.|++++| +++..--..+.++++|+.|.+.
T Consensus 124 l~~i~~l~l~~ck--~~dD~~L~-~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 124 LRSIKSLSLANCK--YFDDWCLE-RLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY 184 (221)
T ss_pred cchhhhheecccc--chhhHHHH-HhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence 5566666666655 33221011 2222 356777777766 4554434556666666666554
No 67
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=87.56 E-value=0.59 Score=18.79 Aligned_cols=14 Identities=57% Similarity=0.662 Sum_probs=9.5
Q ss_pred CCccEEeccCCcCc
Q 036214 70 TSLRILDVSYNQLT 83 (90)
Q Consensus 70 ~~L~~l~l~~n~l~ 83 (90)
++|++|++++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35677777777764
No 68
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=87.00 E-value=0.44 Score=19.14 Aligned_cols=17 Identities=47% Similarity=0.679 Sum_probs=10.3
Q ss_pred cccEEEccCCcCCCcchh
Q 036214 47 HLQELYIASNDLRGSLPW 64 (90)
Q Consensus 47 ~l~~l~l~~n~~~~~~p~ 64 (90)
+|+.|+++.|+++ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4566666666666 5554
No 69
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=85.72 E-value=1.3 Score=28.56 Aligned_cols=39 Identities=23% Similarity=0.300 Sum_probs=22.9
Q ss_pred CcccccEEEccCCcCCCcchhh----hhcCCCccEEeccCCcC
Q 036214 44 SLVHLQELYIASNDLRGSLPWC----LANMTSLRILDVSYNQL 82 (90)
Q Consensus 44 ~l~~l~~l~l~~n~~~~~~p~~----~~~l~~L~~l~l~~n~l 82 (90)
.++.++..++++|.+....|+. +.+-..|.+|.+++|.+
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 3456666677777666555543 33445566666666654
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=84.08 E-value=3.1 Score=22.32 Aligned_cols=57 Identities=18% Similarity=0.239 Sum_probs=25.0
Q ss_pred CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccC
Q 036214 17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSY 79 (90)
Q Consensus 17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~ 79 (90)
+..++.+.+..+- .... .. .|..+..++.+.+.. .+...-...+..+.+++.+.+..
T Consensus 34 ~~~l~~i~~~~~~---~~i~-~~-~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 34 CTSLKSINFPNNL---TSIG-DN-AFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPS 90 (129)
T ss_dssp -TT-SEEEESSTT---SCE--TT-TTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETT
T ss_pred ccccccccccccc---cccc-ee-eeecccccccccccc-cccccccccccccccccccccCc
Confidence 4466666665532 2211 22 455555666666654 33312223455566666666644
No 71
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=83.37 E-value=0.24 Score=32.11 Aligned_cols=58 Identities=28% Similarity=0.269 Sum_probs=29.7
Q ss_pred CcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCC
Q 036214 20 LKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYN 80 (90)
Q Consensus 20 l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n 80 (90)
++.+|++... ++..- ...-+..+..|+.+.+.++++.+.+...+.+-.+|+.++++.+
T Consensus 187 lq~lDLS~s~--it~st-l~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~ 244 (419)
T KOG2120|consen 187 LQHLDLSNSV--ITVST-LHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMC 244 (419)
T ss_pred hHHhhcchhh--eeHHH-HHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccc
Confidence 5556666555 22111 1112344455666666666666555555555555666655543
No 72
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=75.11 E-value=14 Score=24.15 Aligned_cols=69 Identities=17% Similarity=0.200 Sum_probs=43.1
Q ss_pred hHHHhhCCCCcEEeccCCccccccccchh---hhhcCcccccEEEccCCcCCCcchhhhh-------------cCCCccE
Q 036214 11 QSIGESMSSLKYLSLSGSTIGINSSMILD---QGLCSLVHLQELYIASNDLRGSLPWCLA-------------NMTSLRI 74 (90)
Q Consensus 11 ~~~~~~l~~l~~L~l~~n~~~~~~~~~~~---~~~~~l~~l~~l~l~~n~~~~~~p~~~~-------------~l~~L~~ 74 (90)
+.+.. |+.|+.+++|.|- +.... |. +.+..-+.+..+.+..|.+...-...++ .-+.|+.
T Consensus 86 ~aLlk-cp~l~~v~LSDNA--fg~~~-~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~ 161 (388)
T COG5238 86 KALLK-CPRLQKVDLSDNA--FGSEF-PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEV 161 (388)
T ss_pred HHHhc-CCcceeeeccccc--cCccc-chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceE
Confidence 34556 8899999999998 55444 43 1234456688888988887632112222 2356777
Q ss_pred EeccCCcCc
Q 036214 75 LDVSYNQLT 83 (90)
Q Consensus 75 l~l~~n~l~ 83 (90)
+....|++.
T Consensus 162 vicgrNRle 170 (388)
T COG5238 162 VICGRNRLE 170 (388)
T ss_pred EEeccchhc
Confidence 777777653
No 73
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=74.35 E-value=2.3 Score=29.62 Aligned_cols=65 Identities=20% Similarity=0.134 Sum_probs=39.2
Q ss_pred CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCC--cCCCcchhhhhcCC--CccEEeccCCcCccc
Q 036214 17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASN--DLRGSLPWCLANMT--SLRILDVSYNQLTGS 85 (90)
Q Consensus 17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n--~~~~~~p~~~~~l~--~L~~l~l~~n~l~~~ 85 (90)
.+.+..+.|+.|+ +.......+-....+.+..|+|+.| .+. ...++.++. -|++|.+.+|.++..
T Consensus 217 ~p~i~sl~lsnNr--L~~Ld~~sslsq~apklk~L~LS~N~~~~~--~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 217 FPEILSLSLSNNR--LYHLDALSSLSQIAPKLKTLDLSHNHSKIS--SESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred Ccceeeeecccch--hhchhhhhHHHHhcchhheeecccchhhhc--chhhhhhhcCCCHHHeeecCCccccc
Confidence 5667778888888 5543311111233467889999988 333 222333332 367888888887754
No 74
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=72.33 E-value=3.5 Score=33.91 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=24.9
Q ss_pred eccCCccccccccchhhhhcCcccccEEEccCCcCC
Q 036214 24 SLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLR 59 (90)
Q Consensus 24 ~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~ 59 (90)
||++|+ +.... .. .|..+.+|+.|+|++|.+.
T Consensus 1 DLSnN~--LstLp-~g-~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNK--ISTIE-EG-ICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCc--CCccC-hH-HhccCCCceEEEeeCCccc
Confidence 578888 66543 44 7888999999999999765
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=66.27 E-value=0.14 Score=31.99 Aligned_cols=40 Identities=5% Similarity=-0.103 Sum_probs=20.9
Q ss_pred hcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214 42 LCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL 82 (90)
Q Consensus 42 ~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l 82 (90)
+.....+..+++..|+.+ ..|-++...+.++.+++-.|.|
T Consensus 84 ~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 84 AKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred HHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcc
Confidence 334444444444444444 5566666666666665555543
No 76
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=64.31 E-value=6.2 Score=15.21 Aligned_cols=12 Identities=42% Similarity=0.387 Sum_probs=8.8
Q ss_pred CCccEEeccCCc
Q 036214 70 TSLRILDVSYNQ 81 (90)
Q Consensus 70 ~~L~~l~l~~n~ 81 (90)
++|+.|++++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 567888888774
No 77
>PRK15386 type III secretion protein GogB; Provisional
Probab=52.68 E-value=27 Score=23.81 Aligned_cols=42 Identities=21% Similarity=0.262 Sum_probs=29.4
Q ss_pred hcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcccCC
Q 036214 42 LCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGSIS 87 (90)
Q Consensus 42 ~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~~~p 87 (90)
+..+.++..|+++.+.++ .+|. + ..+|+.|.++++.--..+|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP 89 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLP 89 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCC
Confidence 445788999999999888 6672 2 2368999998754333344
No 78
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=37.64 E-value=32 Score=29.08 Aligned_cols=30 Identities=17% Similarity=0.373 Sum_probs=21.6
Q ss_pred CCcCCccchhHHHhhCCCCcEEeccCCcccccc
Q 036214 2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINS 34 (90)
Q Consensus 2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~ 34 (90)
+|+|. .+|+..+..+.+|+.|+|.+|. +.-
T Consensus 4 nN~Ls-tLp~g~F~~L~sL~~LdLsgNP--w~C 33 (2740)
T TIGR00864 4 NNKIS-TIEEGICANLCNLSEIDLSGNP--FEC 33 (2740)
T ss_pred CCcCC-ccChHHhccCCCceEEEeeCCc--ccc
Confidence 45555 5555555559999999999998 543
No 79
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=31.64 E-value=58 Score=21.51 Aligned_cols=11 Identities=45% Similarity=0.612 Sum_probs=5.0
Q ss_pred CCCCcEEeccC
Q 036214 17 MSSLKYLSLSG 27 (90)
Q Consensus 17 l~~l~~L~l~~ 27 (90)
++.|+.|++++
T Consensus 213 ~~~L~~L~l~~ 223 (482)
T KOG1947|consen 213 CPNLEELDLSG 223 (482)
T ss_pred CchhheecccC
Confidence 44444444443
No 80
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=28.76 E-value=43 Score=13.33 Aligned_cols=10 Identities=20% Similarity=0.424 Sum_probs=7.2
Q ss_pred CCCCcEEecc
Q 036214 17 MSSLKYLSLS 26 (90)
Q Consensus 17 l~~l~~L~l~ 26 (90)
+++|+.||..
T Consensus 12 LPqL~~LD~~ 21 (26)
T smart00446 12 LPQLRKLDXX 21 (26)
T ss_pred CCccceeccc
Confidence 7778887754
Done!