Query 036214
Match_columns 90
No_of_seqs 105 out of 1313
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 18:03:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036214.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036214hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 99.6 1.6E-15 5.4E-20 102.7 7.5 83 2-89 641-723 (768)
2 3rgz_A Protein brassinosteroid 99.5 8.1E-14 2.8E-18 94.4 5.4 82 3-89 618-699 (768)
3 1ogq_A PGIP-2, polygalacturona 99.4 2.2E-13 7.5E-18 84.0 4.7 80 3-87 87-166 (313)
4 1w8a_A SLIT protein; signaling 99.4 6.1E-13 2.1E-17 77.1 6.0 81 2-87 38-119 (192)
5 1w8a_A SLIT protein; signaling 99.4 1.1E-12 3.9E-17 76.0 7.0 80 2-86 63-142 (192)
6 3g39_A Variable lymphocyte rec 99.4 1.9E-12 6.6E-17 73.8 7.4 79 2-85 39-117 (170)
7 2v70_A SLIT-2, SLIT homolog 2 99.4 2.5E-12 8.7E-17 75.9 7.9 78 3-85 67-144 (220)
8 2r9u_A Variable lymphocyte rec 99.3 4.5E-12 1.5E-16 72.6 7.4 78 2-84 42-119 (174)
9 1ogq_A PGIP-2, polygalacturona 99.3 1.4E-12 4.7E-17 80.5 5.2 82 2-88 110-192 (313)
10 4fcg_A Uncharacterized protein 99.3 4.1E-12 1.4E-16 78.9 7.3 80 3-88 216-295 (328)
11 2v9t_B SLIT homolog 2 protein 99.3 7.2E-12 2.5E-16 74.0 7.8 78 3-85 66-143 (220)
12 2wfh_A SLIT homolog 2 protein 99.3 1.8E-11 6.1E-16 71.1 8.6 78 2-85 40-117 (193)
13 2v9t_B SLIT homolog 2 protein 99.3 1E-11 3.5E-16 73.3 7.1 82 2-88 41-122 (220)
14 2v70_A SLIT-2, SLIT homolog 2 99.3 1.2E-11 4E-16 73.1 7.4 79 2-85 90-168 (220)
15 3e6j_A Variable lymphocyte rec 99.3 1.7E-11 6E-16 72.7 7.9 76 3-83 50-125 (229)
16 2ifg_A High affinity nerve gro 99.3 9.7E-12 3.3E-16 77.3 7.0 75 4-85 20-95 (347)
17 4eco_A Uncharacterized protein 99.3 3.4E-12 1.2E-16 85.1 4.8 80 2-87 192-292 (636)
18 4g8a_A TOLL-like receptor 4; l 99.3 1.6E-11 5.5E-16 80.6 7.3 79 2-85 61-139 (635)
19 2o6r_A Variable lymphocyte rec 99.3 4E-11 1.4E-15 68.4 7.9 77 3-84 38-114 (177)
20 4fcg_A Uncharacterized protein 99.2 2.6E-11 8.9E-16 75.3 7.0 79 3-88 193-271 (328)
21 4b8c_D Glucose-repressible alc 99.2 8.8E-12 3E-16 84.4 5.1 77 3-87 257-333 (727)
22 2o6r_A Variable lymphocyte rec 99.2 2.9E-11 9.7E-16 69.0 6.5 81 2-87 61-141 (177)
23 2wfh_A SLIT homolog 2 protein 99.2 4.3E-11 1.5E-15 69.5 7.0 78 2-84 63-140 (193)
24 3m19_A Variable lymphocyte rec 99.2 6.2E-11 2.1E-15 70.9 7.9 76 3-83 45-120 (251)
25 3e6j_A Variable lymphocyte rec 99.2 7E-11 2.4E-15 70.1 7.9 78 2-85 73-150 (229)
26 3m19_A Variable lymphocyte rec 99.2 7.2E-11 2.5E-15 70.7 7.9 64 17-84 106-169 (251)
27 3v47_A TOLL-like receptor 5B a 99.2 5.5E-11 1.9E-15 75.9 7.7 80 3-87 333-412 (455)
28 2r9u_A Variable lymphocyte rec 99.2 5.6E-11 1.9E-15 68.0 6.8 75 6-87 24-98 (174)
29 4ecn_A Leucine-rich repeat pro 99.2 1.5E-11 5E-16 84.8 4.9 80 2-87 434-534 (876)
30 2o6s_A Variable lymphocyte rec 99.2 9.9E-11 3.4E-15 68.2 7.7 64 17-84 75-138 (208)
31 2je0_A Acidic leucine-rich nuc 99.2 5.7E-11 2E-15 66.0 6.4 69 8-83 33-101 (149)
32 3v47_A TOLL-like receptor 5B a 99.2 6.4E-11 2.2E-15 75.6 7.4 77 3-84 309-385 (455)
33 3g39_A Variable lymphocyte rec 99.2 7.7E-11 2.6E-15 67.1 6.9 77 3-87 19-95 (170)
34 3rfs_A Internalin B, repeat mo 99.2 1.1E-10 3.6E-15 70.7 7.8 78 3-85 119-196 (272)
35 2o6s_A Variable lymphocyte rec 99.2 1.3E-10 4.3E-15 67.8 7.9 81 2-87 37-117 (208)
36 4g8a_A TOLL-like receptor 4; l 99.2 3.4E-11 1.2E-15 79.1 6.0 76 8-88 485-560 (635)
37 3rfs_A Internalin B, repeat mo 99.2 1.2E-10 4.1E-15 70.5 7.9 64 17-84 108-171 (272)
38 2ifg_A High affinity nerve gro 99.2 8.7E-11 3E-15 73.0 6.7 76 3-84 42-117 (347)
39 1dce_A Protein (RAB geranylger 99.2 2E-10 6.9E-15 76.1 8.7 78 2-87 472-550 (567)
40 2ell_A Acidic leucine-rich nuc 99.2 7.8E-11 2.7E-15 66.6 5.7 71 7-84 39-109 (168)
41 2je0_A Acidic leucine-rich nuc 99.1 1.2E-10 4.1E-15 64.7 6.2 78 2-86 51-129 (149)
42 2z81_A CD282 antigen, TOLL-lik 99.1 1.3E-10 4.6E-15 75.6 7.2 78 2-84 35-112 (549)
43 2z66_A Variable lymphocyte rec 99.1 1E-10 3.5E-15 71.5 6.2 74 9-87 167-240 (306)
44 2xot_A Amphoterin-induced prot 99.1 1.4E-10 4.9E-15 72.7 6.4 77 3-84 74-150 (361)
45 1ozn_A Reticulon 4 receptor; N 99.1 2.7E-10 9.1E-15 69.1 7.5 43 42-84 149-191 (285)
46 3vq2_A TLR4, TOLL-like recepto 99.1 1.7E-10 5.9E-15 75.9 7.0 77 3-84 42-118 (606)
47 1dce_A Protein (RAB geranylger 99.1 2.2E-10 7.4E-15 75.9 7.4 77 2-88 450-527 (567)
48 1p9a_G Platelet glycoprotein I 99.1 3.1E-10 1.1E-14 69.4 7.7 76 3-83 110-185 (290)
49 2xot_A Amphoterin-induced prot 99.1 1.6E-10 5.5E-15 72.4 6.3 81 2-87 48-129 (361)
50 4eco_A Uncharacterized protein 99.1 7.5E-11 2.6E-15 78.7 4.9 73 9-87 239-321 (636)
51 2id5_A Lingo-1, leucine rich r 99.1 2.5E-10 8.7E-15 73.4 7.1 80 2-86 41-120 (477)
52 3vq2_A TLR4, TOLL-like recepto 99.1 3E-10 1E-14 74.8 7.5 80 3-87 90-170 (606)
53 4ezg_A Putative uncharacterize 99.1 2.6E-10 9E-15 66.0 6.5 73 4-83 99-172 (197)
54 3t6q_A CD180 antigen; protein- 99.1 1.7E-10 5.8E-15 76.0 6.3 78 2-84 42-119 (606)
55 1xku_A Decorin; proteoglycan, 99.1 3.7E-10 1.3E-14 69.7 7.4 78 2-85 201-278 (330)
56 2z7x_B TOLL-like receptor 1, v 99.1 2.6E-10 9E-15 74.0 6.9 75 2-84 30-104 (520)
57 3zyi_A Leucine-rich repeat-con 99.1 3.2E-10 1.1E-14 72.8 7.2 79 2-85 84-162 (452)
58 2z63_A TOLL-like receptor 4, v 99.1 1.7E-10 5.7E-15 75.4 5.8 75 8-87 461-535 (570)
59 4b8c_D Glucose-repressible alc 99.1 2E-10 6.9E-15 77.8 6.3 77 3-88 234-310 (727)
60 3oja_B Anopheles plasmodium-re 99.1 4.7E-10 1.6E-14 74.3 7.9 65 17-85 98-162 (597)
61 2o6q_A Variable lymphocyte rec 99.1 6.7E-10 2.3E-14 67.0 7.8 64 17-84 132-195 (270)
62 1ziw_A TOLL-like receptor 3; i 99.1 7.4E-10 2.5E-14 73.9 8.6 80 3-87 59-138 (680)
63 1ozn_A Reticulon 4 receptor; N 99.1 6.5E-10 2.2E-14 67.4 7.3 68 12-84 51-119 (285)
64 2z62_A TOLL-like receptor 4, v 99.1 5.4E-10 1.8E-14 67.5 6.8 77 3-84 38-114 (276)
65 2ft3_A Biglycan; proteoglycan, 99.1 4.2E-10 1.4E-14 69.6 6.4 78 2-85 202-279 (332)
66 2o6q_A Variable lymphocyte rec 99.1 1.1E-09 3.9E-14 66.1 8.0 64 17-84 108-171 (270)
67 2ell_A Acidic leucine-rich nuc 99.0 1.7E-09 5.7E-14 61.1 8.1 79 2-84 80-161 (168)
68 3zyj_A Leucine-rich repeat-con 99.0 7.5E-10 2.6E-14 70.8 7.3 79 2-85 73-151 (440)
69 2z62_A TOLL-like receptor 4, v 99.0 8.7E-10 3E-14 66.6 7.2 78 3-85 86-164 (276)
70 2z66_A Variable lymphocyte rec 99.0 4.5E-10 1.5E-14 68.7 5.7 78 3-85 136-214 (306)
71 2z80_A TOLL-like receptor 2, v 99.0 9.5E-10 3.2E-14 68.5 7.2 78 2-84 61-138 (353)
72 3o6n_A APL1; leucine-rich repe 99.0 1.2E-09 4.3E-14 68.7 7.7 17 67-83 138-154 (390)
73 2z81_A CD282 antigen, TOLL-lik 99.0 5E-10 1.7E-14 72.9 6.1 81 2-87 59-140 (549)
74 2id5_A Lingo-1, leucine rich r 99.0 7.9E-10 2.7E-14 71.2 6.9 81 2-87 65-145 (477)
75 2z7x_B TOLL-like receptor 1, v 99.0 5E-10 1.7E-14 72.7 6.0 81 2-87 333-416 (520)
76 2z63_A TOLL-like receptor 4, v 99.0 5E-10 1.7E-14 73.1 6.0 81 2-87 430-511 (570)
77 1p9a_G Platelet glycoprotein I 99.0 1.1E-09 3.9E-14 66.9 7.3 77 3-85 87-163 (290)
78 3t6q_A CD180 antigen; protein- 99.0 7.9E-10 2.7E-14 72.8 6.9 78 2-84 66-143 (606)
79 3a79_B TLR6, VLRB.59, TOLL-lik 99.0 7E-10 2.4E-14 72.8 6.6 75 2-84 61-135 (562)
80 4ezg_A Putative uncharacterize 99.0 1.1E-09 3.6E-14 63.5 6.5 66 11-81 82-147 (197)
81 4ecn_A Leucine-rich repeat pro 99.0 2.7E-10 9.3E-15 78.6 4.5 75 8-88 480-565 (876)
82 1wwl_A Monocyte differentiatio 99.0 1.2E-10 4.2E-15 71.6 2.5 35 47-81 150-184 (312)
83 3j0a_A TOLL-like receptor 5; m 99.0 3.5E-10 1.2E-14 77.4 5.0 64 17-84 72-137 (844)
84 1a9n_A U2A', U2A'; complex (nu 99.0 5.9E-10 2E-14 63.5 5.2 62 17-83 63-126 (176)
85 1ziw_A TOLL-like receptor 3; i 99.0 1.6E-09 5.6E-14 72.2 7.8 81 2-87 34-114 (680)
86 3oja_B Anopheles plasmodium-re 99.0 1.4E-09 4.9E-14 72.0 7.5 79 2-85 108-186 (597)
87 3zyi_A Leucine-rich repeat-con 99.0 1.2E-09 3.9E-14 70.2 6.8 63 17-83 217-279 (452)
88 3zyj_A Leucine-rich repeat-con 99.0 1.2E-09 4.2E-14 69.9 6.1 64 17-84 206-269 (440)
89 3o6n_A APL1; leucine-rich repe 99.0 2.7E-09 9.4E-14 67.2 7.4 78 2-84 102-179 (390)
90 1wwl_A Monocyte differentiatio 98.9 2.1E-09 7.2E-14 66.1 6.4 44 43-86 198-244 (312)
91 3oja_A Leucine-rich immune mol 98.9 2.5E-09 8.6E-14 69.5 7.0 76 2-84 153-228 (487)
92 2xwt_C Thyrotropin receptor; s 98.9 7.3E-10 2.5E-14 65.7 4.0 78 3-84 41-119 (239)
93 3j0a_A TOLL-like receptor 5; m 98.9 1.5E-09 5.1E-14 74.3 5.8 79 3-85 34-112 (844)
94 2z80_A TOLL-like receptor 2, v 98.9 2.9E-09 9.8E-14 66.3 5.9 74 2-81 85-160 (353)
95 3a79_B TLR6, VLRB.59, TOLL-lik 98.9 2.4E-09 8.3E-14 70.3 5.8 81 2-87 362-445 (562)
96 4glp_A Monocyte differentiatio 98.9 1.9E-09 6.5E-14 66.2 4.2 79 2-84 100-183 (310)
97 2ft3_A Biglycan; proteoglycan, 98.9 5.9E-09 2E-13 64.4 6.4 17 66-82 143-159 (332)
98 1xku_A Decorin; proteoglycan, 98.9 6.1E-09 2.1E-13 64.3 6.4 39 17-59 75-113 (330)
99 3o53_A Protein LRIM1, AGAP0063 98.9 8.3E-09 2.8E-13 63.6 7.0 75 3-84 154-228 (317)
100 3oja_A Leucine-rich immune mol 98.9 3.9E-09 1.3E-13 68.6 5.5 78 2-86 129-207 (487)
101 4fmz_A Internalin; leucine ric 98.8 1.4E-08 4.9E-13 62.8 7.3 69 12-87 260-328 (347)
102 3goz_A Leucine-rich repeat-con 98.8 6.9E-09 2.4E-13 65.0 5.7 79 2-85 7-95 (362)
103 4fmz_A Internalin; leucine ric 98.8 2.2E-08 7.5E-13 62.0 7.9 64 13-83 283-346 (347)
104 4glp_A Monocyte differentiatio 98.8 2.2E-09 7.6E-14 65.9 3.3 80 3-87 155-241 (310)
105 1a9n_A U2A', U2A'; complex (nu 98.8 9.4E-09 3.2E-13 58.5 5.5 75 2-84 28-102 (176)
106 1h6u_A Internalin H; cell adhe 98.7 7.7E-08 2.6E-12 59.2 7.9 39 42-82 103-141 (308)
107 2xwt_C Thyrotropin receptor; s 98.7 1.1E-08 3.7E-13 60.7 3.8 62 12-80 75-140 (239)
108 1h6t_A Internalin B; cell adhe 98.7 1E-07 3.6E-12 58.2 8.2 40 42-83 152-191 (291)
109 1h6t_A Internalin B; cell adhe 98.7 9.2E-08 3.2E-12 58.4 8.0 60 17-84 111-170 (291)
110 1ds9_A Outer arm dynein; leuci 98.7 1.1E-09 3.9E-14 63.4 -0.5 65 12-84 43-107 (198)
111 3o53_A Protein LRIM1, AGAP0063 98.7 1.2E-08 4.2E-13 62.8 4.0 62 17-84 33-94 (317)
112 2ca6_A RAN GTPase-activating p 98.7 1.8E-08 6.1E-13 63.4 4.5 74 7-85 234-318 (386)
113 2ast_B S-phase kinase-associat 98.7 2.2E-08 7.4E-13 61.7 4.7 70 9-83 110-182 (336)
114 3rw6_A Nuclear RNA export fact 98.7 2.8E-08 9.5E-13 60.6 5.0 65 17-87 169-237 (267)
115 1h6u_A Internalin H; cell adhe 98.7 1.6E-07 5.5E-12 57.7 8.5 40 43-84 170-209 (308)
116 1xeu_A Internalin C; cellular 98.7 1.6E-07 5.4E-12 56.7 7.9 62 13-84 81-142 (263)
117 4ay9_X Follicle-stimulating ho 98.7 2.3E-08 7.8E-13 62.4 4.2 78 3-85 40-119 (350)
118 1m9s_A Internalin B; cell inva 98.6 1.9E-07 6.7E-12 62.4 8.5 60 17-84 130-189 (605)
119 1o6v_A Internalin A; bacterial 98.6 2.2E-07 7.4E-12 59.9 8.3 39 44-84 329-367 (466)
120 3goz_A Leucine-rich repeat-con 98.6 6.2E-08 2.1E-12 60.6 5.6 69 11-84 44-123 (362)
121 1xeu_A Internalin C; cellular 98.6 8.4E-08 2.9E-12 57.9 5.7 63 13-84 124-186 (263)
122 1m9s_A Internalin B; cell inva 98.6 1.5E-07 5E-12 63.0 7.2 42 42-85 127-168 (605)
123 2ast_B S-phase kinase-associat 98.6 3.5E-08 1.2E-12 60.7 4.0 76 3-84 80-157 (336)
124 1ds9_A Outer arm dynein; leuci 98.6 2.1E-09 7E-14 62.3 -1.5 71 9-87 85-157 (198)
125 1o6v_A Internalin A; bacterial 98.6 1.8E-07 6.3E-12 60.2 7.4 72 2-84 318-389 (466)
126 1z7x_W Ribonuclease inhibitor; 98.6 8.6E-08 2.9E-12 61.2 4.8 72 9-85 333-413 (461)
127 2ca6_A RAN GTPase-activating p 98.5 2E-07 6.8E-12 58.7 6.2 64 17-84 186-258 (386)
128 3g06_A SSPH2 (leucine-rich rep 98.5 3.1E-07 1.1E-11 61.6 5.9 62 17-87 240-301 (622)
129 3bz5_A Internalin-J, INLJ; leu 98.5 6.4E-07 2.2E-11 57.9 7.2 62 12-84 59-120 (457)
130 1jl5_A Outer protein YOPM; leu 98.5 4.4E-07 1.5E-11 58.6 6.2 70 2-84 140-209 (454)
131 1jl5_A Outer protein YOPM; leu 98.5 1.5E-07 5E-12 60.8 4.0 64 17-88 336-416 (454)
132 3cvr_A Invasion plasmid antige 98.4 2.5E-07 8.7E-12 61.5 4.4 61 18-87 180-247 (571)
133 3bz5_A Internalin-J, INLJ; leu 98.4 8E-07 2.7E-11 57.5 6.0 68 8-85 33-100 (457)
134 1z7x_W Ribonuclease inhibitor; 98.3 6.9E-07 2.4E-11 57.0 4.4 71 9-84 276-355 (461)
135 4ay9_X Follicle-stimulating ho 98.3 1.1E-06 3.9E-11 54.7 4.7 73 8-87 23-97 (350)
136 3cvr_A Invasion plasmid antige 98.3 2.6E-06 8.9E-11 56.7 6.5 55 17-83 139-193 (571)
137 3rw6_A Nuclear RNA export fact 98.2 7.7E-06 2.6E-10 49.9 7.0 71 2-77 179-258 (267)
138 3ogk_B Coronatine-insensitive 98.1 2.7E-06 9.1E-11 55.9 4.6 75 8-85 453-528 (592)
139 3un9_A NLR family member X1; l 98.0 1.1E-05 3.6E-10 51.1 4.7 64 17-83 182-252 (372)
140 3un9_A NLR family member X1; l 97.9 7E-06 2.4E-10 51.9 3.3 65 17-84 154-225 (372)
141 3g06_A SSPH2 (leucine-rich rep 97.8 4.7E-05 1.6E-09 51.2 6.2 57 18-87 221-277 (622)
142 2p1m_B Transport inhibitor res 97.8 2E-05 7E-10 51.7 3.8 38 45-82 480-518 (594)
143 3ogk_B Coronatine-insensitive 97.7 5.2E-05 1.8E-09 49.8 4.9 65 17-84 163-234 (592)
144 1io0_A Tropomodulin; LRR prote 97.7 5.3E-05 1.8E-09 43.4 4.1 14 46-59 93-106 (185)
145 2p1m_B Transport inhibitor res 97.6 7.1E-05 2.4E-09 49.1 4.0 66 13-84 428-495 (594)
146 1io0_A Tropomodulin; LRR prote 97.6 0.00016 5.3E-09 41.5 4.8 70 10-83 86-164 (185)
147 3e4g_A ATP synthase subunit S, 97.5 0.00016 5.4E-09 41.6 4.7 65 13-81 81-150 (176)
148 3sb4_A Hypothetical leucine ri 97.5 0.00021 7.1E-09 44.1 5.3 62 17-84 249-311 (329)
149 3rfe_A Platelet glycoprotein I 97.5 0.00052 1.8E-08 37.4 6.1 34 48-81 33-66 (130)
150 2ra8_A Uncharacterized protein 97.4 0.0001 3.5E-09 46.6 2.8 64 17-83 251-320 (362)
151 3sb4_A Hypothetical leucine ri 97.2 0.0008 2.7E-08 41.5 5.0 63 9-77 264-328 (329)
152 3e4g_A ATP synthase subunit S, 97.1 0.00058 2E-08 39.2 3.6 61 19-83 62-128 (176)
153 3rfe_A Platelet glycoprotein I 97.0 0.00092 3.1E-08 36.4 3.8 45 8-59 24-68 (130)
154 1pgv_A TMD-1, tropomodulin TMD 96.1 0.0087 3E-07 34.9 4.1 60 18-80 70-136 (197)
155 4fdw_A Leucine rich hypothetic 95.8 0.018 6E-07 36.8 5.0 40 41-82 318-357 (401)
156 1pgv_A TMD-1, tropomodulin TMD 95.3 0.027 9.1E-07 32.9 4.0 65 17-84 40-112 (197)
157 4fdw_A Leucine rich hypothetic 95.3 0.049 1.7E-06 34.7 5.5 64 12-80 266-333 (401)
158 4gt6_A Cell surface protein; l 94.9 0.13 4.3E-06 32.4 6.5 67 9-81 302-368 (394)
159 2ra8_A Uncharacterized protein 94.4 0.12 4.2E-06 32.6 5.6 17 11-28 166-182 (362)
160 4h09_A Hypothetical leucine ri 93.9 0.087 3E-06 32.8 4.2 56 17-77 285-340 (379)
161 4fs7_A Uncharacterized protein 93.5 0.083 2.8E-06 33.3 3.7 57 17-79 319-375 (394)
162 4h09_A Hypothetical leucine ri 90.2 0.9 3.1E-05 28.2 5.6 58 17-79 262-319 (379)
163 4gt6_A Cell surface protein; l 86.1 1.3 4.3E-05 27.9 4.3 61 13-82 330-390 (394)
164 4fs7_A Uncharacterized protein 86.1 1.3 4.5E-05 27.8 4.4 58 17-80 296-353 (394)
165 2lz0_A Uncharacterized protein 55.5 19 0.00065 18.2 3.5 38 13-56 16-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.61 E-value=1.6e-15 Score=102.67 Aligned_cols=83 Identities=31% Similarity=0.416 Sum_probs=78.4
Q ss_pred CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214 2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ 81 (90)
Q Consensus 2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~ 81 (90)
+|.+.|.+|..+.. ++.|+.|++++|. +++.+ |. .+..++.|+.+++++|+++|.+|..+..+++|+.+++++|+
T Consensus 641 ~N~l~g~ip~~l~~-l~~L~~L~Ls~N~--l~g~i-p~-~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 641 YNMLSGYIPKEIGS-MPYLFILNLGHND--ISGSI-PD-EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp SSCCBSCCCGGGGG-CTTCCEEECCSSC--CCSCC-CG-GGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred CCcccccCCHHHhc-cccCCEEeCcCCc--cCCCC-Ch-HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence 68899999999999 9999999999999 89888 88 89999999999999999999999999999999999999999
Q ss_pred CcccCCCC
Q 036214 82 LTGSISLS 89 (90)
Q Consensus 82 l~~~~p~~ 89 (90)
++|.+|..
T Consensus 716 l~g~iP~~ 723 (768)
T 3rgz_A 716 LSGPIPEM 723 (768)
T ss_dssp EEEECCSS
T ss_pred ccccCCCc
Confidence 99999974
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.45 E-value=8.1e-14 Score=94.37 Aligned_cols=82 Identities=24% Similarity=0.356 Sum_probs=75.8
Q ss_pred CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214 3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL 82 (90)
Q Consensus 3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l 82 (90)
|.+.|.+|..+.. ++.|+.|++++|. +++.+ |. .+..++.|+.+++++|.+++.+|..+..+++|+.|++++|++
T Consensus 618 ~~~~g~~~~~~~~-l~~L~~LdLs~N~--l~g~i-p~-~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l 692 (768)
T 3rgz_A 618 RVYGGHTSPTFDN-NGSMMFLDMSYNM--LSGYI-PK-EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692 (768)
T ss_dssp CEEEEECCCSCSS-SBCCCEEECCSSC--CBSCC-CG-GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred ceecccCchhhhc-cccccEEECcCCc--ccccC-CH-HHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcc
Confidence 5667778888887 9999999999999 99988 88 899999999999999999999999999999999999999999
Q ss_pred cccCCCC
Q 036214 83 TGSISLS 89 (90)
Q Consensus 83 ~~~~p~~ 89 (90)
+|.+|..
T Consensus 693 ~g~ip~~ 699 (768)
T 3rgz_A 693 DGRIPQA 699 (768)
T ss_dssp EECCCGG
T ss_pred cCcCChH
Confidence 9999863
No 3
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.41 E-value=2.2e-13 Score=84.04 Aligned_cols=80 Identities=23% Similarity=0.394 Sum_probs=49.3
Q ss_pred CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214 3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL 82 (90)
Q Consensus 3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l 82 (90)
|.+.+.+|+.+.. +++|++|++++|. +.+.. |. .+..+++|+++++++|.+++.+|..+..+++|++|++++|.+
T Consensus 87 n~l~~~~p~~l~~-l~~L~~L~Ls~n~--l~~~~-p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 161 (313)
T 1ogq_A 87 NNLVGPIPPAIAK-LTQLHYLYITHTN--VSGAI-PD-FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161 (313)
T ss_dssp TTEESCCCGGGGG-CTTCSEEEEEEEC--CEEEC-CG-GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCC
T ss_pred CcccccCChhHhc-CCCCCEEECcCCe--eCCcC-CH-HHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcc
Confidence 4555556666655 6666666666666 55444 55 566666666666666666656666666666666666666666
Q ss_pred cccCC
Q 036214 83 TGSIS 87 (90)
Q Consensus 83 ~~~~p 87 (90)
.+.+|
T Consensus 162 ~~~~p 166 (313)
T 1ogq_A 162 SGAIP 166 (313)
T ss_dssp EEECC
T ss_pred cCcCC
Confidence 65555
No 4
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.40 E-value=6.1e-13 Score=77.11 Aligned_cols=81 Identities=17% Similarity=0.253 Sum_probs=52.3
Q ss_pred CCcCCccchhH-HHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCC
Q 036214 2 RSALNTSFLQS-IGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYN 80 (90)
Q Consensus 2 ~n~~~~~~p~~-~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n 80 (90)
+|.+.+..+.. +.. +++|++|++++|. +++.. +. .+..++.|+.+++++|++++..+..+..+++|+.|++++|
T Consensus 38 ~n~i~~~~~~~~~~~-l~~L~~L~Ls~N~--l~~~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 112 (192)
T 1w8a_A 38 DNELGRISSDGLFGR-LPHLVKLELKRNQ--LTGIE-PN-AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN 112 (192)
T ss_dssp SCCCCSBCCSCSGGG-CTTCCEEECCSSC--CCCBC-TT-TTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSS
T ss_pred CCcCCccCCcccccc-CCCCCEEECCCCC--CCCcC-Hh-HcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC
Confidence 34454443332 445 7777777777777 66654 55 6667777777777777777555555666777777777777
Q ss_pred cCcccCC
Q 036214 81 QLTGSIS 87 (90)
Q Consensus 81 ~l~~~~p 87 (90)
++++..|
T Consensus 113 ~l~~~~~ 119 (192)
T 1w8a_A 113 QISCVMP 119 (192)
T ss_dssp CCCEECT
T ss_pred cCCeeCH
Confidence 7776555
No 5
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.40 E-value=1.1e-12 Score=75.97 Aligned_cols=80 Identities=19% Similarity=0.232 Sum_probs=66.3
Q ss_pred CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214 2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ 81 (90)
Q Consensus 2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~ 81 (90)
+|.+.+..|..|.. +++|++|++++|. +++.. +. .+..+++|+.+++++|++++..|..+..+++|+.+++++|.
T Consensus 63 ~N~l~~~~~~~~~~-l~~L~~L~Ls~N~--l~~~~-~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 63 RNQLTGIEPNAFEG-ASHIQELQLGENK--IKEIS-NK-MFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp SSCCCCBCTTTTTT-CTTCCEEECCSCC--CCEEC-SS-SSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CCCCCCcCHhHcCC-cccCCEEECCCCc--CCccC-HH-HhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 57777777777877 8999999999999 77764 55 67888899999999999987778888888999999999998
Q ss_pred CcccC
Q 036214 82 LTGSI 86 (90)
Q Consensus 82 l~~~~ 86 (90)
+.+..
T Consensus 138 l~c~c 142 (192)
T 1w8a_A 138 FNCNC 142 (192)
T ss_dssp BCCSG
T ss_pred ccCcC
Confidence 87654
No 6
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.39 E-value=1.9e-12 Score=73.82 Aligned_cols=79 Identities=15% Similarity=0.145 Sum_probs=60.1
Q ss_pred CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214 2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ 81 (90)
Q Consensus 2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~ 81 (90)
+|.+.+..|..|.. +++|++|++++|. +++.. +. .|..+++|+.+++++|++++..+..+..+++|+.+++++|.
T Consensus 39 ~N~i~~~~~~~~~~-l~~L~~L~Ls~N~--l~~l~-~~-~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 39 DNQITKLEPGVFDR-LTQLTRLDLDNNQ--LTVLP-AG-VFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SSCCCCCCTTTTTT-CTTCSEEECCSSC--CCCCC-TT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcCCccChhhhcC-cccCCEEECCCCC--cCccC-hh-hccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 46677666766777 8888888888888 77653 44 56788888888888888885555567888888888888888
Q ss_pred Cccc
Q 036214 82 LTGS 85 (90)
Q Consensus 82 l~~~ 85 (90)
+...
T Consensus 114 ~~c~ 117 (170)
T 3g39_A 114 WDCA 117 (170)
T ss_dssp BCTT
T ss_pred CCCC
Confidence 7653
No 7
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.38 E-value=2.5e-12 Score=75.94 Aligned_cols=78 Identities=17% Similarity=0.165 Sum_probs=38.4
Q ss_pred CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214 3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL 82 (90)
Q Consensus 3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l 82 (90)
|.+.+..+..|.. +++|++|++++|. +.+.. +. .+..+++|+.+++++|++++..|..+..+++|+.|++++|.+
T Consensus 67 N~i~~i~~~~~~~-l~~L~~L~Ls~N~--l~~~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 141 (220)
T 2v70_A 67 NKITDIEEGAFEG-ASGVNEILLTSNR--LENVQ-HK-MFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI 141 (220)
T ss_dssp SCCCEECTTTTTT-CTTCCEEECCSSC--CCCCC-GG-GGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCC
T ss_pred CcCCEECHHHhCC-CCCCCEEECCCCc--cCccC-Hh-HhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcC
Confidence 3333333333444 5555555555555 44432 33 345555555555555555544445555555555555555555
Q ss_pred ccc
Q 036214 83 TGS 85 (90)
Q Consensus 83 ~~~ 85 (90)
++.
T Consensus 142 ~~~ 144 (220)
T 2v70_A 142 TTV 144 (220)
T ss_dssp CCB
T ss_pred CEE
Confidence 544
No 8
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.35 E-value=4.5e-12 Score=72.60 Aligned_cols=78 Identities=14% Similarity=0.141 Sum_probs=53.9
Q ss_pred CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214 2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ 81 (90)
Q Consensus 2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~ 81 (90)
+|.+.+..|..|.. +++|++|++++|. +++.. +. .+..+++|+.+++++|++++..+..+..+++|+.+++++|.
T Consensus 42 ~N~l~~~~~~~~~~-l~~L~~L~Ls~N~--l~~i~-~~-~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 42 NNQITKLEPGVFDH-LVNLQQLYFNSNK--LTAIP-TG-VFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp SSCCCCCCTTTTTT-CTTCCEEECCSSC--CCCCC-TT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred CCCccccCHHHhcC-CcCCCEEECCCCC--CCccC-hh-HhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCC
Confidence 45666665666666 7778888888887 66542 33 45677778888888888774444457777788888888877
Q ss_pred Ccc
Q 036214 82 LTG 84 (90)
Q Consensus 82 l~~ 84 (90)
+..
T Consensus 117 ~~c 119 (174)
T 2r9u_A 117 WDC 119 (174)
T ss_dssp BCT
T ss_pred ccc
Confidence 654
No 9
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.34 E-value=1.4e-12 Score=80.49 Aligned_cols=82 Identities=18% Similarity=0.340 Sum_probs=68.3
Q ss_pred CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCC-CccEEeccCC
Q 036214 2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMT-SLRILDVSYN 80 (90)
Q Consensus 2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~-~L~~l~l~~n 80 (90)
+|.+.+.+|+.+.. +++|++|++++|. +.+.. |. .+..+++|+.+++++|.+++.+|..+..+. +|+.+++++|
T Consensus 110 ~n~l~~~~p~~~~~-l~~L~~L~Ls~N~--l~~~~-p~-~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N 184 (313)
T 1ogq_A 110 HTNVSGAIPDFLSQ-IKTLVTLDFSYNA--LSGTL-PP-SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184 (313)
T ss_dssp EECCEEECCGGGGG-CTTCCEEECCSSE--EESCC-CG-GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS
T ss_pred CCeeCCcCCHHHhC-CCCCCEEeCCCCc--cCCcC-Ch-HHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC
Confidence 46677788888888 8999999999998 77666 77 788888899999999998888888888887 8889999988
Q ss_pred cCcccCCC
Q 036214 81 QLTGSISL 88 (90)
Q Consensus 81 ~l~~~~p~ 88 (90)
.+.+.+|.
T Consensus 185 ~l~~~~~~ 192 (313)
T 1ogq_A 185 RLTGKIPP 192 (313)
T ss_dssp EEEEECCG
T ss_pred eeeccCCh
Confidence 88877664
No 10
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.34 E-value=4.1e-12 Score=78.88 Aligned_cols=80 Identities=20% Similarity=0.169 Sum_probs=56.7
Q ss_pred CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214 3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL 82 (90)
Q Consensus 3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l 82 (90)
|.+. .+|+.+.. +++|++|++++|. +.+.+ |. .+..+++|+.+++++|.+.+.+|..+..+++|+.|++++|++
T Consensus 216 N~l~-~l~~~l~~-l~~L~~L~Ls~n~--~~~~~-p~-~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 216 SPLS-ALGPAIHH-LPKLEELDLRGCT--ALRNY-PP-IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN 289 (328)
T ss_dssp SCCC-CCCGGGGG-CTTCCEEECTTCT--TCCBC-CC-CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTT
T ss_pred CCCC-cCchhhcc-CCCCCEEECcCCc--chhhh-HH-HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCc
Confidence 4444 34555666 7777777777777 66655 66 677777777777777777767777777777777777877777
Q ss_pred cccCCC
Q 036214 83 TGSISL 88 (90)
Q Consensus 83 ~~~~p~ 88 (90)
.+.+|.
T Consensus 290 ~~~iP~ 295 (328)
T 4fcg_A 290 LSRLPS 295 (328)
T ss_dssp CCCCCG
T ss_pred hhhccH
Confidence 777764
No 11
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.33 E-value=7.2e-12 Score=73.98 Aligned_cols=78 Identities=19% Similarity=0.195 Sum_probs=45.4
Q ss_pred CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214 3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL 82 (90)
Q Consensus 3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l 82 (90)
|.+.+..|..|.. +++|++|++++|. ++... +. .+..+++|+.+++++|++++..|..+..+++|+.|++++|.+
T Consensus 66 N~i~~~~~~~~~~-l~~L~~L~Ls~N~--l~~l~-~~-~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 140 (220)
T 2v9t_B 66 NQISELAPDAFQG-LRSLNSLVLYGNK--ITELP-KS-LFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL 140 (220)
T ss_dssp SCCCEECTTTTTT-CSSCCEEECCSSC--CCCCC-TT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CcCCCcCHHHhhC-CcCCCEEECCCCc--CCccC-Hh-HccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcC
Confidence 4455444555555 6666666666666 44432 22 355566666666666666655555666666666666666666
Q ss_pred ccc
Q 036214 83 TGS 85 (90)
Q Consensus 83 ~~~ 85 (90)
++.
T Consensus 141 ~~~ 143 (220)
T 2v9t_B 141 QTI 143 (220)
T ss_dssp SCC
T ss_pred CEE
Confidence 654
No 12
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.31 E-value=1.8e-11 Score=71.11 Aligned_cols=78 Identities=19% Similarity=0.305 Sum_probs=62.2
Q ss_pred CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214 2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ 81 (90)
Q Consensus 2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~ 81 (90)
+|.+. .+|..+.. +++|+.|++++|. +++.. +. .|..++.|+.+++++|++++..+..+..+++|+.|++++|.
T Consensus 40 ~n~i~-~ip~~~~~-l~~L~~L~Ls~N~--i~~i~-~~-~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~ 113 (193)
T 2wfh_A 40 GNQFT-LVPKELSN-YKHLTLIDLSNNR--ISTLS-NQ-SFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGND 113 (193)
T ss_dssp SSCCC-SCCGGGGG-CTTCCEEECCSSC--CCCCC-TT-TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcCc-hhHHHhhc-ccCCCEEECCCCc--CCEeC-Hh-HccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCC
Confidence 34454 56777777 8899999999999 77654 55 68888889999999999986666778888899999999998
Q ss_pred Cccc
Q 036214 82 LTGS 85 (90)
Q Consensus 82 l~~~ 85 (90)
+++.
T Consensus 114 l~~~ 117 (193)
T 2wfh_A 114 ISVV 117 (193)
T ss_dssp CCBC
T ss_pred CCee
Confidence 8864
No 13
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.30 E-value=1e-11 Score=73.33 Aligned_cols=82 Identities=16% Similarity=0.159 Sum_probs=66.2
Q ss_pred CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214 2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ 81 (90)
Q Consensus 2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~ 81 (90)
+|.+.+..+..|.. +++|++|++++|. +.+.. +. .+..+++|+.+++++|+++...+..+..+++|+.|++++|.
T Consensus 41 ~n~i~~i~~~~~~~-l~~L~~L~Ls~N~--i~~~~-~~-~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 115 (220)
T 2v9t_B 41 QNTIKVIPPGAFSP-YKKLRRIDLSNNQ--ISELA-PD-AFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANK 115 (220)
T ss_dssp SSCCCEECTTSSTT-CTTCCEEECCSSC--CCEEC-TT-TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcCCCcCHhHhhC-CCCCCEEECCCCc--CCCcC-HH-HhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCC
Confidence 45666555556666 8999999999999 77765 66 78999999999999999995544567889999999999999
Q ss_pred CcccCCC
Q 036214 82 LTGSISL 88 (90)
Q Consensus 82 l~~~~p~ 88 (90)
+.+..|.
T Consensus 116 l~~~~~~ 122 (220)
T 2v9t_B 116 INCLRVD 122 (220)
T ss_dssp CCCCCTT
T ss_pred CCEeCHH
Confidence 9886553
No 14
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.30 E-value=1.2e-11 Score=73.09 Aligned_cols=79 Identities=20% Similarity=0.230 Sum_probs=69.0
Q ss_pred CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214 2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ 81 (90)
Q Consensus 2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~ 81 (90)
+|.+.+..+..|.. +++|++|++++|. +.+.. +. .+..+++|+.+++++|.+++..|..+..+++|+.+++++|.
T Consensus 90 ~N~l~~~~~~~~~~-l~~L~~L~Ls~N~--l~~~~-~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 90 SNRLENVQHKMFKG-LESLKTLMLRSNR--ITCVG-ND-SFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp SSCCCCCCGGGGTT-CSSCCEEECTTSC--CCCBC-TT-SSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCccCccCHhHhcC-CcCCCEEECCCCc--CCeEC-Hh-HcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 57777766666777 9999999999999 88765 66 78899999999999999997778999999999999999999
Q ss_pred Cccc
Q 036214 82 LTGS 85 (90)
Q Consensus 82 l~~~ 85 (90)
+...
T Consensus 165 l~c~ 168 (220)
T 2v70_A 165 FNCN 168 (220)
T ss_dssp EECS
T ss_pred CcCC
Confidence 8754
No 15
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.29 E-value=1.7e-11 Score=72.67 Aligned_cols=76 Identities=20% Similarity=0.180 Sum_probs=36.7
Q ss_pred CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214 3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL 82 (90)
Q Consensus 3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l 82 (90)
|.+.+..|..+.. +++|+.|++++|. +.... +. .+..+++|+.+++++|++++..+..+..+++|+.|++++|.+
T Consensus 50 n~i~~~~~~~~~~-l~~L~~L~L~~N~--l~~i~-~~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l 124 (229)
T 3e6j_A 50 NQITKLEPGVFDS-LINLKELYLGSNQ--LGALP-VG-VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL 124 (229)
T ss_dssp SCCCCCCTTTTTT-CTTCCEEECCSSC--CCCCC-TT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CccCccCHHHhhC-ccCCcEEECCCCC--CCCcC-hh-hcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcc
Confidence 4444444444444 5555555555555 43321 22 344555555555555555533333344445555555555544
Q ss_pred c
Q 036214 83 T 83 (90)
Q Consensus 83 ~ 83 (90)
.
T Consensus 125 ~ 125 (229)
T 3e6j_A 125 T 125 (229)
T ss_dssp C
T ss_pred c
Confidence 4
No 16
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.29 E-value=9.7e-12 Score=77.29 Aligned_cols=75 Identities=25% Similarity=0.285 Sum_probs=61.5
Q ss_pred cCCccchhHHHhhCCCCcEEeccC-CccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214 4 ALNTSFLQSIGESMSSLKYLSLSG-STIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL 82 (90)
Q Consensus 4 ~~~~~~p~~~~~~l~~l~~L~l~~-n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l 82 (90)
.+. .+|. +.. +.+|+.|+|++ |. +.+.. +. .|..+.+|+.|++++|++++..|..|..+++|+.|+|++|++
T Consensus 20 ~l~-~ip~-l~~-~~~L~~L~l~~~n~--l~~~~-~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 20 ALD-SLHH-LPG-AENLTELYIENQQH--LQHLE-LR-DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp CCT-TTTT-SCS-CSCCSEEECCSCSS--CCEEC-GG-GSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred CCC-ccCC-CCC-CCCeeEEEccCCCC--CCCcC-hh-HhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence 444 4777 777 88899999986 88 77754 55 788899999999999999977777888999999999999998
Q ss_pred ccc
Q 036214 83 TGS 85 (90)
Q Consensus 83 ~~~ 85 (90)
.+.
T Consensus 93 ~~~ 95 (347)
T 2ifg_A 93 ESL 95 (347)
T ss_dssp SCC
T ss_pred cee
Confidence 864
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.28 E-value=3.4e-12 Score=85.08 Aligned_cols=80 Identities=14% Similarity=0.295 Sum_probs=67.1
Q ss_pred CCcCCccchhHHHhhCCCCcEEeccCCccccccc-----------------cchhhhhc--CcccccEEEccCCcCCCcc
Q 036214 2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSS-----------------MILDQGLC--SLVHLQELYIASNDLRGSL 62 (90)
Q Consensus 2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~-----------------~~~~~~~~--~l~~l~~l~l~~n~~~~~~ 62 (90)
.|.+.+ +|+.+.. +++|++|++++|. +++. + |. .+. .+++|+++++++|.+.+.+
T Consensus 192 ~n~l~~-ip~~l~~-l~~L~~L~Ls~n~--l~~~~~~~~~~~~~~~~~~~~i-p~-~l~~~~l~~L~~L~L~~n~l~~~~ 265 (636)
T 4eco_A 192 SNNITF-VSKAVMR-LTKLRQFYMGNSP--FVAENICEAWENENSEYAQQYK-TE-DLKWDNLKDLTDVEVYNCPNLTKL 265 (636)
T ss_dssp SCEEEE-ECGGGGG-CTTCCEEEEESCC--CCGGGBSSSCSCTTSHHHHHHT-TS-CCCGGGCTTCCEEEEECCTTCSSC
T ss_pred cCCCcc-CCHHHhc-ccCCCEEECcCCc--cccccccccccccccchhcccC-ch-hhhhcccCCCCEEEecCCcCCccC
Confidence 457777 8888888 9999999999999 7773 5 77 777 8888999999999988888
Q ss_pred hhhhhcCCCccEEeccCCc-Ccc-cCC
Q 036214 63 PWCLANMTSLRILDVSYNQ-LTG-SIS 87 (90)
Q Consensus 63 p~~~~~l~~L~~l~l~~n~-l~~-~~p 87 (90)
|..+.++++|+.|++++|. ++| .+|
T Consensus 266 p~~l~~l~~L~~L~Ls~n~~l~~~~lp 292 (636)
T 4eco_A 266 PTFLKALPEMQLINVACNRGISGEQLK 292 (636)
T ss_dssp CTTTTTCSSCCEEECTTCTTSCHHHHH
T ss_pred hHHHhcCCCCCEEECcCCCCCccccch
Confidence 8888899999999999987 887 555
No 18
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.26 E-value=1.6e-11 Score=80.57 Aligned_cols=79 Identities=22% Similarity=0.163 Sum_probs=56.3
Q ss_pred CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214 2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ 81 (90)
Q Consensus 2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~ 81 (90)
+|.+.+..+..|.. +++|++|++++|. +++.. +. .|..+++|++|++++|++++..+..|..+++|++|++++|+
T Consensus 61 ~N~i~~l~~~~f~~-l~~L~~L~Ls~N~--i~~i~-~~-~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~ 135 (635)
T 4g8a_A 61 FNPLRHLGSYSFFS-FPELQVLDLSRCE--IQTIE-DG-AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 135 (635)
T ss_dssp TSCCCEECTTTTTT-CTTCCEEECTTCC--CCEEC-TT-TTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSC
T ss_pred CCCCCCCCHHHHhC-CCCCCEEECCCCc--CCCcC-hh-HhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCc
Confidence 46666555556666 8888888888888 66543 44 67778888888888888874444567777888888888877
Q ss_pred Cccc
Q 036214 82 LTGS 85 (90)
Q Consensus 82 l~~~ 85 (90)
+++.
T Consensus 136 l~~l 139 (635)
T 4g8a_A 136 LASL 139 (635)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7664
No 19
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.25 E-value=4e-11 Score=68.37 Aligned_cols=77 Identities=26% Similarity=0.261 Sum_probs=46.2
Q ss_pred CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214 3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL 82 (90)
Q Consensus 3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l 82 (90)
|.+.+..+..+.. +++|++|++++|. +++.. +. .+..+++|+.+++++|.+++..+..+..+++|+.+++++|.+
T Consensus 38 n~l~~~~~~~~~~-l~~L~~L~l~~n~--l~~~~-~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 112 (177)
T 2o6r_A 38 NKLQSLPHGVFDK-LTQLTKLSLSQNQ--IQSLP-DG-VFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQL 112 (177)
T ss_dssp SCCCCCCTTTTTT-CTTCSEEECCSSC--CCCCC-TT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CcccEeCHHHhcC-cccccEEECCCCc--ceEeC-hh-HccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcc
Confidence 4444433333444 6677777777777 55442 33 456666777777777777644444556666677777776666
Q ss_pred cc
Q 036214 83 TG 84 (90)
Q Consensus 83 ~~ 84 (90)
++
T Consensus 113 ~~ 114 (177)
T 2o6r_A 113 KS 114 (177)
T ss_dssp SC
T ss_pred eE
Confidence 64
No 20
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.24 E-value=2.6e-11 Score=75.28 Aligned_cols=79 Identities=19% Similarity=0.228 Sum_probs=63.0
Q ss_pred CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214 3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL 82 (90)
Q Consensus 3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l 82 (90)
|.+. .+|+.+.. +++|++|++++|. +.+ + +. .+..+++|+.+++++|.+.+.+|..+..+++|+.|++++|.+
T Consensus 193 n~l~-~lp~~l~~-l~~L~~L~L~~N~--l~~-l-~~-~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~ 265 (328)
T 4fcg_A 193 TGIR-SLPASIAN-LQNLKSLKIRNSP--LSA-L-GP-AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSN 265 (328)
T ss_dssp ECCC-CCCGGGGG-CTTCCEEEEESSC--CCC-C-CG-GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTT
T ss_pred CCcC-cchHhhcC-CCCCCEEEccCCC--CCc-C-ch-hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCc
Confidence 4444 66777777 8888888888888 665 3 66 677888888888888888878888888888888888888888
Q ss_pred cccCCC
Q 036214 83 TGSISL 88 (90)
Q Consensus 83 ~~~~p~ 88 (90)
.+.+|.
T Consensus 266 ~~~~p~ 271 (328)
T 4fcg_A 266 LLTLPL 271 (328)
T ss_dssp CCBCCT
T ss_pred hhhcch
Confidence 887775
No 21
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.23 E-value=8.8e-12 Score=84.42 Aligned_cols=77 Identities=29% Similarity=0.452 Sum_probs=51.1
Q ss_pred CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214 3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL 82 (90)
Q Consensus 3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l 82 (90)
|.+. .+|+.+.. +++|++|+|++|. ++ .+ |. .+..+.+|+.|++++|.++ .+|..+..+++|+.|++++|.+
T Consensus 257 N~l~-~lp~~~~~-l~~L~~L~Ls~N~--l~-~l-p~-~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 257 NSLT-ELPAEIKN-LSNLRVLDLSHNR--LT-SL-PA-ELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp SCCS-CCCGGGGG-GTTCCEEECTTSC--CS-SC-CS-SGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCC
T ss_pred CcCc-ccChhhhC-CCCCCEEeCcCCc--CC-cc-Ch-hhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCcc
Confidence 4454 56666666 7777777777777 55 34 55 5666677777777777776 6666677777777777777777
Q ss_pred cccCC
Q 036214 83 TGSIS 87 (90)
Q Consensus 83 ~~~~p 87 (90)
.+.+|
T Consensus 329 ~~~~p 333 (727)
T 4b8c_D 329 EKQFL 333 (727)
T ss_dssp CSHHH
T ss_pred CCCCh
Confidence 66544
No 22
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.23 E-value=2.9e-11 Score=68.99 Aligned_cols=81 Identities=19% Similarity=0.170 Sum_probs=64.9
Q ss_pred CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214 2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ 81 (90)
Q Consensus 2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~ 81 (90)
+|.+.+..+..+.. +++|++|++++|. +++.. +. .+..+++|+.+++++|.+++..+..+..+++|+.+++++|.
T Consensus 61 ~n~l~~~~~~~~~~-l~~L~~L~l~~N~--l~~~~-~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 61 QNQIQSLPDGVFDK-LTKLTILYLHENK--LQSLP-NG-VFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp SSCCCCCCTTTTTT-CTTCCEEECCSSC--CCCCC-TT-TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcceEeChhHccC-CCccCEEECCCCC--ccccC-HH-HhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 46666554444566 9999999999999 77754 44 57889999999999999995555556889999999999999
Q ss_pred CcccCC
Q 036214 82 LTGSIS 87 (90)
Q Consensus 82 l~~~~p 87 (90)
+.+..|
T Consensus 136 ~~~~~~ 141 (177)
T 2o6r_A 136 WDCSCP 141 (177)
T ss_dssp BCCCHH
T ss_pred eeccCc
Confidence 887543
No 23
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.22 E-value=4.3e-11 Score=69.46 Aligned_cols=78 Identities=22% Similarity=0.178 Sum_probs=66.1
Q ss_pred CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214 2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ 81 (90)
Q Consensus 2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~ 81 (90)
+|.+.+..+..|.. +++|+.|++++|. +++.. +. .+..+++|+.+++++|.++...+..+..+++|+.+++++|.
T Consensus 63 ~N~i~~i~~~~f~~-l~~L~~L~Ls~N~--l~~i~-~~-~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 63 NNRISTLSNQSFSN-MTQLLTLILSYNR--LRCIP-PR-TFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp SSCCCCCCTTTTTT-CTTCCEEECCSSC--CCBCC-TT-TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcCCEeCHhHccC-CCCCCEEECCCCc--cCEeC-HH-HhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 57777666666777 9999999999999 88765 65 79999999999999999995555578899999999999998
Q ss_pred Ccc
Q 036214 82 LTG 84 (90)
Q Consensus 82 l~~ 84 (90)
+..
T Consensus 138 ~~C 140 (193)
T 2wfh_A 138 LYC 140 (193)
T ss_dssp EEC
T ss_pred eec
Confidence 753
No 24
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.22 E-value=6.2e-11 Score=70.92 Aligned_cols=76 Identities=22% Similarity=0.205 Sum_probs=33.8
Q ss_pred CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214 3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL 82 (90)
Q Consensus 3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l 82 (90)
|.+.+..+..+.. +++|++|++++|. +.+.. +. .+..+++|+.+++++|.+++..+..+..+++|+.|++++|.+
T Consensus 45 n~l~~~~~~~~~~-l~~L~~L~L~~n~--l~~~~-~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 119 (251)
T 3m19_A 45 TGLATLSDATFRG-LTKLTWLNLDYNQ--LQTLS-AG-VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQL 119 (251)
T ss_dssp SCCCCCCTTTTTT-CTTCCEEECTTSC--CCCCC-TT-TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCcCccCHhHhcC-cccCCEEECCCCc--CCccC-Hh-HhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcC
Confidence 3333333333444 5555555555555 44432 32 344444455555555544433333344444444444444444
Q ss_pred c
Q 036214 83 T 83 (90)
Q Consensus 83 ~ 83 (90)
.
T Consensus 120 ~ 120 (251)
T 3m19_A 120 K 120 (251)
T ss_dssp C
T ss_pred C
Confidence 4
No 25
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.22 E-value=7e-11 Score=70.07 Aligned_cols=78 Identities=26% Similarity=0.351 Sum_probs=58.4
Q ss_pred CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214 2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ 81 (90)
Q Consensus 2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~ 81 (90)
+|.+....+..|.. +++|+.|++++|. +++.. +. .+..+++|+.+++++|+++ .+|..+..+++|+.|++++|.
T Consensus 73 ~N~l~~i~~~~~~~-l~~L~~L~Ls~N~--l~~l~-~~-~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~ 146 (229)
T 3e6j_A 73 SNQLGALPVGVFDS-LTQLTVLDLGTNQ--LTVLP-SA-VFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQ 146 (229)
T ss_dssp SSCCCCCCTTTTTT-CTTCCEEECCSSC--CCCCC-TT-TTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSC
T ss_pred CCCCCCcChhhccc-CCCcCEEECCCCc--CCccC-hh-HhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCc
Confidence 45554333333455 8889999999988 76653 44 5778888888888888888 778888888888888888888
Q ss_pred Cccc
Q 036214 82 LTGS 85 (90)
Q Consensus 82 l~~~ 85 (90)
+.+.
T Consensus 147 l~~~ 150 (229)
T 3e6j_A 147 LKSI 150 (229)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 8754
No 26
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.22 E-value=7.2e-11 Score=70.66 Aligned_cols=64 Identities=28% Similarity=0.365 Sum_probs=28.2
Q ss_pred CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214 17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG 84 (90)
Q Consensus 17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~ 84 (90)
+++|++|++++|. +++.. +. .+..+++|+.+++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus 106 l~~L~~L~L~~N~--l~~~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 106 LTQLDKLYLGGNQ--LKSLP-SG-VFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp CTTCCEEECCSSC--CCCCC-TT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred cCCCCEEEcCCCc--CCCcC-hh-HhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 4444444444444 33321 22 23444444444554444443333344444455555555554443
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.21 E-value=5.5e-11 Score=75.93 Aligned_cols=80 Identities=21% Similarity=0.184 Sum_probs=43.5
Q ss_pred CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214 3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL 82 (90)
Q Consensus 3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l 82 (90)
|.+.+..|..+.. +++|++|++++|. +.+.. +. .+..+++|+.+++++|++++..+..+..+++|+.+++++|++
T Consensus 333 N~l~~~~~~~~~~-l~~L~~L~Ls~N~--l~~~~-~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 333 NFLGSIDSRMFEN-LDKLEVLDLSYNH--IRALG-DQ-SFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp SCCCEECGGGGTT-CTTCCEEECCSSC--CCEEC-TT-TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CccCCcChhHhcC-cccCCEEECCCCc--ccccC-hh-hccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCc
Confidence 4444444444444 5566666666665 44443 44 455556666666666666543334445566666666666666
Q ss_pred cccCC
Q 036214 83 TGSIS 87 (90)
Q Consensus 83 ~~~~p 87 (90)
.+..|
T Consensus 408 ~~~~~ 412 (455)
T 3v47_A 408 DCSCP 412 (455)
T ss_dssp CCCTT
T ss_pred ccCCC
Confidence 65554
No 28
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.20 E-value=5.6e-11 Score=68.02 Aligned_cols=75 Identities=27% Similarity=0.251 Sum_probs=62.1
Q ss_pred CccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCccc
Q 036214 6 NTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGS 85 (90)
Q Consensus 6 ~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~~ 85 (90)
.+.+|..+. +.+++|++++|. +.+.. +. .+..+++|+.|++++|++++..+..+..+++|+.|++++|++.+.
T Consensus 24 l~~iP~~~~---~~L~~L~Ls~N~--l~~~~-~~-~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l 96 (174)
T 2r9u_A 24 LASVPAGIP---TDKQRLWLNNNQ--ITKLE-PG-VFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI 96 (174)
T ss_dssp CSSCCSCCC---TTCSEEECCSSC--CCCCC-TT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCccCCCcC---CCCcEEEeCCCC--ccccC-HH-HhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcccee
Confidence 356776553 589999999999 88775 66 789999999999999999955555678999999999999999874
Q ss_pred CC
Q 036214 86 IS 87 (90)
Q Consensus 86 ~p 87 (90)
.+
T Consensus 97 ~~ 98 (174)
T 2r9u_A 97 PR 98 (174)
T ss_dssp CT
T ss_pred CH
Confidence 33
No 29
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.20 E-value=1.5e-11 Score=84.84 Aligned_cols=80 Identities=15% Similarity=0.264 Sum_probs=65.7
Q ss_pred CCcCCccchhHHHhhCCCCcEEeccCCcccccc-----------------ccchhhhhc--CcccccEEEccCCcCCCcc
Q 036214 2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINS-----------------SMILDQGLC--SLVHLQELYIASNDLRGSL 62 (90)
Q Consensus 2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~-----------------~~~~~~~~~--~l~~l~~l~l~~n~~~~~~ 62 (90)
.|.+.+ +|+.+.. +++|+.|++++|. +++ .+ |. .+. .+++|+.+++++|.+.+.+
T Consensus 434 ~N~L~~-IP~~l~~-L~~L~~L~Ls~N~--Lsg~~i~~~~~~~s~n~~~g~i-P~-~l~f~~L~~L~~L~Ls~N~l~~~i 507 (876)
T 4ecn_A 434 TNRITF-ISKAIQR-LTKLQIIYFANSP--FTYDNIAVDWEDANSDYAKQYE-NE-ELSWSNLKDLTDVELYNCPNMTQL 507 (876)
T ss_dssp SCEEEE-ECGGGGG-CTTCCEEEEESCC--CCGGGBSSSCSCTTSHHHHHHT-TS-CCCGGGCTTCCEEEEESCTTCCSC
T ss_pred cCcccc-hhHHHhc-CCCCCEEECcCCc--CCCCcccccccccccccccccC-Ch-hhhhccCCCCCEEECcCCCCCccC
Confidence 366666 8888888 9999999999998 777 25 76 665 8888999999999888888
Q ss_pred hhhhhcCCCccEEeccCCc-Ccc-cCC
Q 036214 63 PWCLANMTSLRILDVSYNQ-LTG-SIS 87 (90)
Q Consensus 63 p~~~~~l~~L~~l~l~~n~-l~~-~~p 87 (90)
|..+..+++|+.|++++|+ ++| .+|
T Consensus 508 P~~l~~L~~L~~L~Ls~N~~lsg~~iP 534 (876)
T 4ecn_A 508 PDFLYDLPELQSLNIACNRGISAAQLK 534 (876)
T ss_dssp CGGGGGCSSCCEEECTTCTTSCHHHHH
T ss_pred hHHHhCCCCCCEEECcCCCCcccccch
Confidence 8888899999999999887 887 555
No 30
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.20 E-value=9.9e-11 Score=68.19 Aligned_cols=64 Identities=30% Similarity=0.359 Sum_probs=35.6
Q ss_pred CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214 17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG 84 (90)
Q Consensus 17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~ 84 (90)
+++|++|++++|. +++.. +. .+..+++|+.+++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus 75 l~~L~~L~Ls~n~--l~~~~-~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 138 (208)
T 2o6s_A 75 LTSLTYLNLSTNQ--LQSLP-NG-VFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS 138 (208)
T ss_dssp CTTCCEEECCSSC--CCCCC-TT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCcCEEECCCCc--CCccC-Hh-HhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccce
Confidence 5666666666666 44432 22 34555666666666666654333445555666666666665554
No 31
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.20 E-value=5.7e-11 Score=65.96 Aligned_cols=69 Identities=23% Similarity=0.290 Sum_probs=30.6
Q ss_pred cchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCc
Q 036214 8 SFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLT 83 (90)
Q Consensus 8 ~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~ 83 (90)
.+|..+.. +++|++|++++|. +.+. . .+..+++|+.+++++|.+++.+|..+..+++|+.+++++|.+.
T Consensus 33 ~~~~~~~~-l~~L~~L~l~~n~--l~~~---~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~ 101 (149)
T 2je0_A 33 KLEGLTDE-FEELEFLSTINVG--LTSI---A-NLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101 (149)
T ss_dssp BCCSCCTT-CTTCCEEECTTSC--CCCC---T-TCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCC
T ss_pred HHHHHHhh-cCCCcEEECcCCC--CCCc---h-hhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCC
Confidence 44443333 4455555555554 3321 1 3344444444444444444334444444444444444444443
No 32
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.19 E-value=6.4e-11 Score=75.63 Aligned_cols=77 Identities=21% Similarity=0.166 Sum_probs=37.0
Q ss_pred CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214 3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL 82 (90)
Q Consensus 3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l 82 (90)
|.+.+..|..+.. +++|++|++++|. +.+.. +. .+..++.|+.+++++|++++..|..+..+++|+.|++++|++
T Consensus 309 n~l~~~~~~~~~~-l~~L~~L~Ls~N~--l~~~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 383 (455)
T 3v47_A 309 NEINKIDDNAFWG-LTHLLKLNLSQNF--LGSID-SR-MFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL 383 (455)
T ss_dssp SCCCEECTTTTTT-CTTCCEEECCSSC--CCEEC-GG-GGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CcccccChhHhcC-cccCCEEECCCCc--cCCcC-hh-HhcCcccCCEEECCCCcccccChhhccccccccEEECCCCcc
Confidence 3333333434444 4555555555555 43332 33 444455555555555555544444555555555555555555
Q ss_pred cc
Q 036214 83 TG 84 (90)
Q Consensus 83 ~~ 84 (90)
++
T Consensus 384 ~~ 385 (455)
T 3v47_A 384 KS 385 (455)
T ss_dssp SC
T ss_pred cc
Confidence 44
No 33
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.19 E-value=7.7e-11 Score=67.14 Aligned_cols=77 Identities=22% Similarity=0.178 Sum_probs=63.3
Q ss_pred CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214 3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL 82 (90)
Q Consensus 3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l 82 (90)
|.+. .+|..+. +.++.|++++|. +.+.. +. .+..+++|+.+++++|++++..+..+..+++|+.|++++|++
T Consensus 19 n~l~-~ip~~~~---~~l~~L~L~~N~--i~~~~-~~-~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l 90 (170)
T 3g39_A 19 KSLA-SVPTGIP---TTTQVLYLYDNQ--ITKLE-PG-VFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90 (170)
T ss_dssp SCCS-SCCSCCC---TTCSEEECCSSC--CCCCC-TT-TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCcC-ccCccCC---CCCcEEEcCCCc--CCccC-hh-hhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCcc
Confidence 4444 4666543 589999999999 88875 66 789999999999999999966666778999999999999999
Q ss_pred cccCC
Q 036214 83 TGSIS 87 (90)
Q Consensus 83 ~~~~p 87 (90)
++..+
T Consensus 91 ~~~~~ 95 (170)
T 3g39_A 91 KSIPR 95 (170)
T ss_dssp CCCCT
T ss_pred CEeCH
Confidence 87544
No 34
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.19 E-value=1.1e-10 Score=70.69 Aligned_cols=78 Identities=23% Similarity=0.255 Sum_probs=38.4
Q ss_pred CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214 3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL 82 (90)
Q Consensus 3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l 82 (90)
|.+.+..+..+.. +++|++|++++|. +.+.. +. .+..+++|+.+++++|.+++..+..+..+++|+.|++++|.+
T Consensus 119 n~l~~~~~~~~~~-l~~L~~L~L~~n~--l~~~~-~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 119 NQLQSLPDGVFDK-LTNLTYLNLAHNQ--LQSLP-KG-VFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp SCCCCCCTTTTTT-CTTCCEEECCSSC--CCCCC-TT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CcCCccCHHHhcc-CCCCCEEECCCCc--cCccC-HH-HhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence 3444333333444 5555555555555 44432 22 344555555555555555543334445555555555555555
Q ss_pred ccc
Q 036214 83 TGS 85 (90)
Q Consensus 83 ~~~ 85 (90)
.+.
T Consensus 194 ~~~ 196 (272)
T 3rfs_A 194 KSV 196 (272)
T ss_dssp SCC
T ss_pred Ccc
Confidence 543
No 35
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.19 E-value=1.3e-10 Score=67.75 Aligned_cols=81 Identities=23% Similarity=0.240 Sum_probs=62.9
Q ss_pred CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214 2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ 81 (90)
Q Consensus 2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~ 81 (90)
+|.+.+..+..+.. +++|++|++++|. +.+.. +. .+..+++|+++++++|.+++..+..+..+++|+.|++++|.
T Consensus 37 ~n~l~~~~~~~~~~-l~~L~~L~l~~n~--l~~~~-~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 111 (208)
T 2o6s_A 37 TNSLKSLPNGVFDE-LTSLTQLYLGGNK--LQSLP-NG-VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQ 111 (208)
T ss_dssp SSCCCCCCTTTTTT-CTTCSEEECCSSC--CCCCC-TT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCcCChhhhcc-cccCcEEECCCCc--cCccC-hh-hcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCc
Confidence 45666544444556 8999999999999 77653 44 57888999999999999985555667889999999999999
Q ss_pred CcccCC
Q 036214 82 LTGSIS 87 (90)
Q Consensus 82 l~~~~p 87 (90)
+.+..+
T Consensus 112 l~~~~~ 117 (208)
T 2o6s_A 112 LQSLPD 117 (208)
T ss_dssp CCCCCT
T ss_pred CcccCH
Confidence 886543
No 36
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.19 E-value=3.4e-11 Score=79.05 Aligned_cols=76 Identities=24% Similarity=0.277 Sum_probs=57.2
Q ss_pred cchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcccCC
Q 036214 8 SFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGSIS 87 (90)
Q Consensus 8 ~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~~~p 87 (90)
..|..+.. +++|++|++++|. +.+.. |. .|..+++|+.+++++|++++..+..+..+++|+.|++++|++++..|
T Consensus 485 ~~~~~~~~-l~~L~~L~Ls~N~--L~~l~-~~-~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~ 559 (635)
T 4g8a_A 485 FLPDIFTE-LRNLTFLDLSQCQ--LEQLS-PT-AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 559 (635)
T ss_dssp EECSCCTT-CTTCCEEECTTSC--CCEEC-TT-TTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCS
T ss_pred cCchhhhh-ccccCEEECCCCc--cCCcC-hH-HHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCH
Confidence 34455555 7888888888888 77655 55 67788888888888888886666777888888888888888887655
Q ss_pred C
Q 036214 88 L 88 (90)
Q Consensus 88 ~ 88 (90)
.
T Consensus 560 ~ 560 (635)
T 4g8a_A 560 Q 560 (635)
T ss_dssp S
T ss_pred H
Confidence 4
No 37
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.19 E-value=1.2e-10 Score=70.48 Aligned_cols=64 Identities=31% Similarity=0.343 Sum_probs=30.7
Q ss_pred CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214 17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG 84 (90)
Q Consensus 17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~ 84 (90)
+++|++|++++|. +.+.. +. .+..+++|+.+++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus 108 l~~L~~L~L~~n~--l~~~~-~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 171 (272)
T 3rfs_A 108 LTNLKELVLVENQ--LQSLP-DG-VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS 171 (272)
T ss_dssp CTTCCEEECTTSC--CCCCC-TT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CcCCCEEECCCCc--CCccC-HH-HhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc
Confidence 5555555555555 44332 22 34445555555555555553333334445555555555555543
No 38
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.16 E-value=8.7e-11 Score=72.98 Aligned_cols=76 Identities=20% Similarity=0.163 Sum_probs=63.4
Q ss_pred CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214 3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL 82 (90)
Q Consensus 3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l 82 (90)
|.+.+..+..|.. +++|+.|+|++|. +++.. +. .|..+++|+.|+|++|++++..+..+..+. |+.|++.+|.+
T Consensus 42 n~l~~~~~~~~~~-l~~L~~L~l~~N~--l~~~~-~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 42 QHLQHLELRDLRG-LGELRNLTIVKSG--LRFVA-PD-AFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp SSCCEECGGGSCS-CCCCSEEECCSSC--CCEEC-TT-GGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCC
T ss_pred CCCCCcChhHhcc-ccCCCEEECCCCc--cceeC-HH-HhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCc
Confidence 7777776677777 9999999999999 88875 66 789999999999999999955445555555 99999999988
Q ss_pred cc
Q 036214 83 TG 84 (90)
Q Consensus 83 ~~ 84 (90)
..
T Consensus 116 ~c 117 (347)
T 2ifg_A 116 HC 117 (347)
T ss_dssp CC
T ss_pred cC
Confidence 63
No 39
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.16 E-value=2e-10 Score=76.06 Aligned_cols=78 Identities=23% Similarity=0.322 Sum_probs=53.6
Q ss_pred CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcc-hhhhhcCCCccEEeccCC
Q 036214 2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSL-PWCLANMTSLRILDVSYN 80 (90)
Q Consensus 2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~-p~~~~~l~~L~~l~l~~n 80 (90)
+|.+. .+|..+.. +++|+.|++++|. +++ + | .+..+++|+.|++++|++++.. |..+..+++|+.|++++|
T Consensus 472 ~N~l~-~lp~~~~~-l~~L~~L~Ls~N~--l~~-l-p--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 472 HNRLR-ALPPALAA-LRCLEVLQASDNA--LEN-V-D--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543 (567)
T ss_dssp SSCCC-CCCGGGGG-CTTCCEEECCSSC--CCC-C-G--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred ccccc-ccchhhhc-CCCCCEEECCCCC--CCC-C-c--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCC
Confidence 34555 56666666 7777777777777 655 2 3 4667777777777777777544 777777777777777777
Q ss_pred cCcccCC
Q 036214 81 QLTGSIS 87 (90)
Q Consensus 81 ~l~~~~p 87 (90)
.+++..|
T Consensus 544 ~l~~~~~ 550 (567)
T 1dce_A 544 SLCQEEG 550 (567)
T ss_dssp GGGGSSS
T ss_pred cCCCCcc
Confidence 7776544
No 40
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.15 E-value=7.8e-11 Score=66.59 Aligned_cols=71 Identities=25% Similarity=0.310 Sum_probs=36.5
Q ss_pred ccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214 7 TSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG 84 (90)
Q Consensus 7 ~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~ 84 (90)
+.+|..+.. +++|++|++++|. +.+. . .+..+++|+.+++++|++++.+|..+..+++|+.|++++|.+.+
T Consensus 39 ~~i~~~~~~-l~~L~~L~l~~n~--l~~~---~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 109 (168)
T 2ell_A 39 GKIEGLTAE-FVNLEFLSLINVG--LISV---S-NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD 109 (168)
T ss_dssp TBCSSCCGG-GGGCCEEEEESSC--CCCC---S-SCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCS
T ss_pred hhHHHHHHh-CCCCCEEeCcCCC--CCCh---h-hhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCc
Confidence 345544444 5555555555555 4432 1 34455555555555555554344444445555555555555543
No 41
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.15 E-value=1.2e-10 Score=64.67 Aligned_cols=78 Identities=18% Similarity=0.195 Sum_probs=61.9
Q ss_pred CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCc-chhhhhcCCCccEEeccCC
Q 036214 2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGS-LPWCLANMTSLRILDVSYN 80 (90)
Q Consensus 2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~-~p~~~~~l~~L~~l~l~~n 80 (90)
+|.+.+. +.+.. +++|++|++++|. +.+.. +. .+..+++|+.+++++|.+++. .+..+..+++|+.+++++|
T Consensus 51 ~n~l~~~--~~~~~-l~~L~~L~Ls~n~--i~~~~-~~-~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 51 NVGLTSI--ANLPK-LNKLKKLELSDNR--VSGGL-EV-LAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123 (149)
T ss_dssp TSCCCCC--TTCCC-CTTCCEEECCSSC--CCSCT-HH-HHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred CCCCCCc--hhhhc-CCCCCEEECCCCc--ccchH-HH-HhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCC
Confidence 3555544 55666 8899999999999 77755 66 677789999999999999842 3377889999999999999
Q ss_pred cCcccC
Q 036214 81 QLTGSI 86 (90)
Q Consensus 81 ~l~~~~ 86 (90)
.+++..
T Consensus 124 ~l~~~~ 129 (149)
T 2je0_A 124 EVTNLN 129 (149)
T ss_dssp GGGGST
T ss_pred cccchH
Confidence 988753
No 42
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.14 E-value=1.3e-10 Score=75.63 Aligned_cols=78 Identities=22% Similarity=0.203 Sum_probs=58.7
Q ss_pred CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214 2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ 81 (90)
Q Consensus 2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~ 81 (90)
+|.+.+..|..+.. +++|++|++++|. +.+.. +. .+..+++|+++++++|.+++..+..+..+++|++|++++|.
T Consensus 35 ~n~l~~~~~~~~~~-l~~L~~L~Ls~n~--i~~~~-~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 109 (549)
T 2z81_A 35 FNKITYIGHGDLRA-CANLQVLILKSSR--INTIE-GD-AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP 109 (549)
T ss_dssp SSCCCEECSSTTSS-CTTCCEEECTTSC--CCEEC-TT-TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCC
T ss_pred CCccCccChhhhhc-CCcccEEECCCCC--cCccC-hh-hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCc
Confidence 45666666666766 8888888888888 66654 55 67788888888888888886666668888888888888887
Q ss_pred Ccc
Q 036214 82 LTG 84 (90)
Q Consensus 82 l~~ 84 (90)
+.+
T Consensus 110 l~~ 112 (549)
T 2z81_A 110 YQT 112 (549)
T ss_dssp CSS
T ss_pred ccc
Confidence 765
No 43
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.14 E-value=1e-10 Score=71.53 Aligned_cols=74 Identities=24% Similarity=0.304 Sum_probs=38.5
Q ss_pred chhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcccCC
Q 036214 9 FLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGSIS 87 (90)
Q Consensus 9 ~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~~~p 87 (90)
+|..+.. +++|+.|++++|. +.+.. +. .+..+++|+.+++++|.+++..+..+..+++|+.+++++|.+.+..|
T Consensus 167 ~~~~~~~-l~~L~~L~Ls~n~--l~~~~-~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 240 (306)
T 2z66_A 167 LPDIFTE-LRNLTFLDLSQCQ--LEQLS-PT-AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240 (306)
T ss_dssp ECSCCTT-CTTCCEEECTTSC--CCEEC-TT-TTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS
T ss_pred chhHHhh-CcCCCEEECCCCC--cCCcC-HH-HhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH
Confidence 3344444 5555555555555 44433 33 45555555555555555554333445555556666666665555443
No 44
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.12 E-value=1.4e-10 Score=72.68 Aligned_cols=77 Identities=22% Similarity=0.214 Sum_probs=35.8
Q ss_pred CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214 3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL 82 (90)
Q Consensus 3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l 82 (90)
|.+.+..+..|.. +++|++|++++|. +.... +. .+..+.+|+.|++++|.++...+..+..+++|+.|++++|.+
T Consensus 74 N~i~~i~~~~~~~-l~~L~~L~Ls~N~--l~~~~-~~-~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l 148 (361)
T 2xot_A 74 NHLNFISSEAFVP-VPNLRYLDLSSNH--LHTLD-EF-LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI 148 (361)
T ss_dssp SCCCEECTTTTTT-CTTCCEEECCSSC--CCEEC-TT-TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CcCCccChhhccC-CCCCCEEECCCCc--CCcCC-HH-HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcC
Confidence 3333333333444 5555555555555 44332 22 344455555555555555433344445555555555555544
Q ss_pred cc
Q 036214 83 TG 84 (90)
Q Consensus 83 ~~ 84 (90)
.+
T Consensus 149 ~~ 150 (361)
T 2xot_A 149 SR 150 (361)
T ss_dssp CS
T ss_pred Ce
Confidence 43
No 45
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.12 E-value=2.7e-10 Score=69.11 Aligned_cols=43 Identities=19% Similarity=0.263 Sum_probs=17.0
Q ss_pred hcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214 42 LCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG 84 (90)
Q Consensus 42 ~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~ 84 (90)
+..+++|+.+++++|++++..+..+..+++|+.+++++|.+.+
T Consensus 149 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred hccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence 3334444444444444442222233334444444444444433
No 46
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.12 E-value=1.7e-10 Score=75.94 Aligned_cols=77 Identities=25% Similarity=0.287 Sum_probs=43.0
Q ss_pred CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214 3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL 82 (90)
Q Consensus 3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l 82 (90)
|.+.+..+..|.. +++|++|++++|. +.+.. +. .+..+++|+.+++++|.+++..|..+..+++|++|++++|.+
T Consensus 42 n~l~~~~~~~~~~-l~~L~~L~Ls~n~--l~~i~-~~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l 116 (606)
T 3vq2_A 42 NPLKILKSYSFSN-FSELQWLDLSRCE--IETIE-DK-AWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 116 (606)
T ss_dssp SCCCEECTTTTTT-CTTCCEEECTTCC--CCEEC-TT-TTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCC
T ss_pred CCcCEeChhhccC-CccCcEEeCCCCc--ccccC-HH-HhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcc
Confidence 4444444444555 6666666666666 55443 44 455566666666666666544455555566666666665555
Q ss_pred cc
Q 036214 83 TG 84 (90)
Q Consensus 83 ~~ 84 (90)
.+
T Consensus 117 ~~ 118 (606)
T 3vq2_A 117 AS 118 (606)
T ss_dssp CC
T ss_pred cc
Confidence 44
No 47
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.12 E-value=2.2e-10 Score=75.89 Aligned_cols=77 Identities=22% Similarity=0.281 Sum_probs=66.2
Q ss_pred CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214 2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ 81 (90)
Q Consensus 2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~ 81 (90)
+|.+.+ +|. +.. +++|+.|++++|. ++ .+ |. .+..+++|+.|++++|.++ .+| .+..+++|+.|++++|.
T Consensus 450 ~n~l~~-lp~-~~~-l~~L~~L~Ls~N~--l~-~l-p~-~~~~l~~L~~L~Ls~N~l~-~lp-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 450 HKDLTV-LCH-LEQ-LLLVTHLDLSHNR--LR-AL-PP-ALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp TSCCSS-CCC-GGG-GTTCCEEECCSSC--CC-CC-CG-GGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSSC
T ss_pred CCCCCC-CcC-ccc-cccCcEeecCccc--cc-cc-ch-hhhcCCCCCEEECCCCCCC-CCc-ccCCCCCCcEEECCCCC
Confidence 466665 665 777 9999999999999 76 45 77 8999999999999999999 477 79999999999999999
Q ss_pred CcccC-CC
Q 036214 82 LTGSI-SL 88 (90)
Q Consensus 82 l~~~~-p~ 88 (90)
+++.. |.
T Consensus 520 l~~~~~p~ 527 (567)
T 1dce_A 520 LQQSAAIQ 527 (567)
T ss_dssp CCSSSTTG
T ss_pred CCCCCCcH
Confidence 99875 53
No 48
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.12 E-value=3.1e-10 Score=69.43 Aligned_cols=76 Identities=22% Similarity=0.227 Sum_probs=37.3
Q ss_pred CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214 3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL 82 (90)
Q Consensus 3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l 82 (90)
|.+.+..+..|.. +++|++|++++|. +.+.. +. .+..+++|+.+++++|+++...+..+..+++|+.|++++|.+
T Consensus 110 N~l~~l~~~~~~~-l~~L~~L~L~~N~--l~~~~-~~-~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l 184 (290)
T 1p9a_G 110 NRLTSLPLGALRG-LGELQELYLKGNE--LKTLP-PG-LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184 (290)
T ss_dssp SCCCCCCSSTTTT-CTTCCEEECTTSC--CCCCC-TT-TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CcCcccCHHHHcC-CCCCCEEECCCCC--CCccC-hh-hcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcC
Confidence 3344333333444 5555555555555 44332 22 344555555555555555533223344555555555555555
Q ss_pred c
Q 036214 83 T 83 (90)
Q Consensus 83 ~ 83 (90)
+
T Consensus 185 ~ 185 (290)
T 1p9a_G 185 Y 185 (290)
T ss_dssp C
T ss_pred C
Confidence 5
No 49
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.11 E-value=1.6e-10 Score=72.45 Aligned_cols=81 Identities=17% Similarity=0.185 Sum_probs=62.9
Q ss_pred CCcCCccchhHHH-hhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCC
Q 036214 2 RSALNTSFLQSIG-ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYN 80 (90)
Q Consensus 2 ~n~~~~~~p~~~~-~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n 80 (90)
+|.+.+..+..+. . +++|+.|++++|. +.+.. +. .+..+++|+.|++++|+++...+..+..+++|+.|++++|
T Consensus 48 ~N~l~~l~~~~~~~~-l~~L~~L~L~~N~--i~~i~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 122 (361)
T 2xot_A 48 HNNLSRLRAEWTPTR-LTNLHSLLLSHNH--LNFIS-SE-AFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNN 122 (361)
T ss_dssp SSCCCEECTTSSSSC-CTTCCEEECCSSC--CCEEC-TT-TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCCCCccChhhhhhc-ccccCEEECCCCc--CCccC-hh-hccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCC
Confidence 4566655554454 5 8899999999999 77654 45 6888899999999999998555567888999999999999
Q ss_pred cCcccCC
Q 036214 81 QLTGSIS 87 (90)
Q Consensus 81 ~l~~~~p 87 (90)
.+.+..|
T Consensus 123 ~i~~~~~ 129 (361)
T 2xot_A 123 HIVVVDR 129 (361)
T ss_dssp CCCEECT
T ss_pred cccEECH
Confidence 9887544
No 50
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.11 E-value=7.5e-11 Score=78.67 Aligned_cols=73 Identities=16% Similarity=0.247 Sum_probs=46.1
Q ss_pred chhHHH--hhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCc-CCC-cchhhhhcC------CCccEEecc
Q 036214 9 FLQSIG--ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASND-LRG-SLPWCLANM------TSLRILDVS 78 (90)
Q Consensus 9 ~p~~~~--~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~-~~~-~~p~~~~~l------~~L~~l~l~ 78 (90)
+|+.+. . +++|++|++++|. +.+.+ |. .+..+++|+.+++++|+ +++ .+|..+..+ ++|+.|+++
T Consensus 239 ip~~l~~~~-l~~L~~L~L~~n~--l~~~~-p~-~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~ 313 (636)
T 4eco_A 239 KTEDLKWDN-LKDLTDVEVYNCP--NLTKL-PT-FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIG 313 (636)
T ss_dssp TTSCCCGGG-CTTCCEEEEECCT--TCSSC-CT-TTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECC
T ss_pred Cchhhhhcc-cCCCCEEEecCCc--CCccC-hH-HHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECC
Confidence 666665 6 7777777777776 66665 65 66666677777777776 665 566555544 555666666
Q ss_pred CCcCcccCC
Q 036214 79 YNQLTGSIS 87 (90)
Q Consensus 79 ~n~l~~~~p 87 (90)
+|.+. .+|
T Consensus 314 ~n~l~-~ip 321 (636)
T 4eco_A 314 YNNLK-TFP 321 (636)
T ss_dssp SSCCS-SCC
T ss_pred CCcCC-ccC
Confidence 55555 444
No 51
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.10 E-value=2.5e-10 Score=73.44 Aligned_cols=80 Identities=19% Similarity=0.233 Sum_probs=47.0
Q ss_pred CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214 2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ 81 (90)
Q Consensus 2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~ 81 (90)
+|.+.+..+..|.. +++|++|++++|. +.+.. +. .+..+++|+.+++++|.++...+..+..+++|+.|++++|.
T Consensus 41 ~n~l~~~~~~~~~~-l~~L~~L~L~~n~--i~~~~-~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 115 (477)
T 2id5_A 41 KNRIKTLNQDEFAS-FPHLEELELNENI--VSAVE-PG-AFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENK 115 (477)
T ss_dssp SSCCCEECTTTTTT-CTTCCEEECTTSC--CCEEC-TT-TTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSC
T ss_pred CCccceECHhHccC-CCCCCEEECCCCc--cCEeC-hh-hhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCc
Confidence 34555544555555 6666666666666 55544 44 56666666666666666663333345566666666666666
Q ss_pred CcccC
Q 036214 82 LTGSI 86 (90)
Q Consensus 82 l~~~~ 86 (90)
+.+..
T Consensus 116 i~~~~ 120 (477)
T 2id5_A 116 IVILL 120 (477)
T ss_dssp CCEEC
T ss_pred cccCC
Confidence 65543
No 52
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.10 E-value=3e-10 Score=74.82 Aligned_cols=80 Identities=24% Similarity=0.289 Sum_probs=41.1
Q ss_pred CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCC-cchhhhhcCCCccEEeccCCc
Q 036214 3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRG-SLPWCLANMTSLRILDVSYNQ 81 (90)
Q Consensus 3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~-~~p~~~~~l~~L~~l~l~~n~ 81 (90)
|.+.+..|..|.. +++|++|++++|. +.+.. +. .+..+.+|+.+++++|.+.+ .+|..+.++++|++|++++|.
T Consensus 90 n~l~~~~p~~~~~-l~~L~~L~L~~n~--l~~~~-~~-~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 90 NPIQSFSPGSFSG-LTSLENLVAVETK--LASLE-SF-PIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp CCCCCCCTTSSTT-CTTCCEEECTTSC--CCCSS-SS-CCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred CcccccChhhcCC-cccCCEEEccCCc--ccccc-cc-ccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence 3344444444444 5555555555555 43332 23 44555555555555555543 345566666666666666666
Q ss_pred CcccCC
Q 036214 82 LTGSIS 87 (90)
Q Consensus 82 l~~~~p 87 (90)
+.+..|
T Consensus 165 l~~~~~ 170 (606)
T 3vq2_A 165 IQTITV 170 (606)
T ss_dssp CCEECT
T ss_pred ceecCh
Confidence 655433
No 53
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.10 E-value=2.6e-10 Score=66.05 Aligned_cols=73 Identities=16% Similarity=0.366 Sum_probs=32.5
Q ss_pred cCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCc-CCCcchhhhhcCCCccEEeccCCcC
Q 036214 4 ALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASND-LRGSLPWCLANMTSLRILDVSYNQL 82 (90)
Q Consensus 4 ~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~-~~~~~p~~~~~l~~L~~l~l~~n~l 82 (90)
.+.+..+..+.. +++|++|++++|. +.+.. +. .+..+++|+.+++++|. ++ .++ .+..+++|+.|++++|.+
T Consensus 99 ~l~~~~~~~l~~-l~~L~~L~Ls~n~--i~~~~-~~-~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i 171 (197)
T 4ezg_A 99 DVTSDKIPNLSG-LTSLTLLDISHSA--HDDSI-LT-KINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGV 171 (197)
T ss_dssp TCBGGGSCCCTT-CTTCCEEECCSSB--CBGGG-HH-HHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCC
T ss_pred ccCcccChhhcC-CCCCCEEEecCCc--cCcHh-HH-HHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCC
Confidence 333333334444 4445555555544 44332 33 34444445555555544 33 333 344444455555554444
Q ss_pred c
Q 036214 83 T 83 (90)
Q Consensus 83 ~ 83 (90)
.
T Consensus 172 ~ 172 (197)
T 4ezg_A 172 H 172 (197)
T ss_dssp C
T ss_pred c
Confidence 4
No 54
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.10 E-value=1.7e-10 Score=75.99 Aligned_cols=78 Identities=19% Similarity=0.130 Sum_probs=46.1
Q ss_pred CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214 2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ 81 (90)
Q Consensus 2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~ 81 (90)
+|.+.+..|..|.. +++|++|++++|. +.+.. +. .+..+++|+.+++++|++++..|..+..+++|++|++++|.
T Consensus 42 ~n~i~~~~~~~~~~-l~~L~~L~Ls~n~--i~~~~-~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 116 (606)
T 3t6q_A 42 FNVLPTIQNTTFSR-LINLTFLDLTRCQ--IYWIH-ED-TFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTG 116 (606)
T ss_dssp TCCCSEECTTTSTT-CTTCSEEECTTCC--CCEEC-TT-TTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSC
T ss_pred CCccCcCChhHhcc-CccceEEECCCCc--cceeC-hh-hccCccccCeeeCCCCcccccChhhhcccccccEeeccccC
Confidence 34555544555555 6666666666666 55443 44 56666666666666666665555556666666666666665
Q ss_pred Ccc
Q 036214 82 LTG 84 (90)
Q Consensus 82 l~~ 84 (90)
+.+
T Consensus 117 i~~ 119 (606)
T 3t6q_A 117 ISS 119 (606)
T ss_dssp CSC
T ss_pred ccc
Confidence 554
No 55
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.10 E-value=3.7e-10 Score=69.73 Aligned_cols=78 Identities=22% Similarity=0.277 Sum_probs=64.6
Q ss_pred CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214 2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ 81 (90)
Q Consensus 2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~ 81 (90)
+|.+.+..|..+.. +++|+.|++++|. +.+.. +. .+..+++|+.+++++|.++ .+|..+..+++|+.+++++|.
T Consensus 201 ~n~l~~~~~~~~~~-l~~L~~L~Ls~n~--l~~~~-~~-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 201 GNKITKVDAASLKG-LNNLAKLGLSFNS--ISAVD-NG-SLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp TSCCCEECTGGGTT-CTTCCEEECCSSC--CCEEC-TT-TGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSC
T ss_pred CCcCCccCHHHhcC-CCCCCEEECCCCc--CceeC-hh-hccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCc
Confidence 46666666777777 8999999999999 77654 55 6788889999999999998 888888889999999999998
Q ss_pred Cccc
Q 036214 82 LTGS 85 (90)
Q Consensus 82 l~~~ 85 (90)
+++.
T Consensus 275 i~~~ 278 (330)
T 1xku_A 275 ISAI 278 (330)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 8764
No 56
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.10 E-value=2.6e-10 Score=73.98 Aligned_cols=75 Identities=20% Similarity=0.247 Sum_probs=46.1
Q ss_pred CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214 2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ 81 (90)
Q Consensus 2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~ 81 (90)
+|.+.+..|..+.. +++|++|++++|. +.+.. |. .+..+++|+++++++|+++ .+|.. .+++|++|++++|.
T Consensus 30 ~n~i~~~~~~~~~~-l~~L~~L~Ls~n~--l~~~~-~~-~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~ 101 (520)
T 2z7x_B 30 QNYISELWTSDILS-LSKLRILIISHNR--IQYLD-IS-VFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNA 101 (520)
T ss_dssp SSCCCCCCHHHHTT-CTTCCEEECCSSC--CCEEE-GG-GGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSC
T ss_pred CCcccccChhhccc-cccccEEecCCCc--cCCcC-hH-HhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCc
Confidence 35555555555655 6667777777776 55544 44 5666666666666666666 45544 56666666666666
Q ss_pred Ccc
Q 036214 82 LTG 84 (90)
Q Consensus 82 l~~ 84 (90)
+.+
T Consensus 102 l~~ 104 (520)
T 2z7x_B 102 FDA 104 (520)
T ss_dssp CSS
T ss_pred ccc
Confidence 654
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.09 E-value=3.2e-10 Score=72.76 Aligned_cols=79 Identities=16% Similarity=0.166 Sum_probs=59.5
Q ss_pred CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214 2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ 81 (90)
Q Consensus 2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~ 81 (90)
+|++.+..+..|.. +++|+.|++++|. +.+.. +. .+..+++|+.+++++|.++...+..+..+++|+.|++++|.
T Consensus 84 ~n~i~~~~~~~~~~-l~~L~~L~Ls~n~--i~~~~-~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 158 (452)
T 3zyi_A 84 ENNIQMIQADTFRH-LHHLEVLQLGRNS--IRQIE-VG-AFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP 158 (452)
T ss_dssp SSCCCEECTTTTTT-CTTCCEEECCSSC--CCEEC-TT-TTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCC
T ss_pred CCcCceECHHHcCC-CCCCCEEECCCCc--cCCcC-hh-hccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCC
Confidence 46666666666777 8888888888888 66654 55 67788888888888888885555567778888888888888
Q ss_pred Cccc
Q 036214 82 LTGS 85 (90)
Q Consensus 82 l~~~ 85 (90)
+.+.
T Consensus 159 l~~~ 162 (452)
T 3zyi_A 159 IESI 162 (452)
T ss_dssp CCEE
T ss_pred ccee
Confidence 7753
No 58
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.09 E-value=1.7e-10 Score=75.35 Aligned_cols=75 Identities=25% Similarity=0.249 Sum_probs=41.3
Q ss_pred cchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcccCC
Q 036214 8 SFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGSIS 87 (90)
Q Consensus 8 ~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~~~p 87 (90)
.+|..+.. +++|++|++++|. +.+.. +. .+..+++|+.+++++|++++..+..+..+++|+.+++++|.+.+..|
T Consensus 461 ~~p~~~~~-l~~L~~L~l~~n~--l~~~~-~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 461 FLPDIFTE-LRNLTFLDLSQCQ--LEQLS-PT-AFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp EECSCCTT-CTTCCEEECTTSC--CCEEC-TT-TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cchhhhhc-ccCCCEEECCCCc--cccCC-hh-hhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 34444444 5555555555555 44443 44 45555556666666666654444455555666666666666655544
No 59
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.09 E-value=2e-10 Score=77.83 Aligned_cols=77 Identities=22% Similarity=0.253 Sum_probs=63.7
Q ss_pred CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214 3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL 82 (90)
Q Consensus 3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l 82 (90)
|.+. .+|..++. +++|+.|+|++|. ++ .+ |. .+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+
T Consensus 234 n~l~-~l~~~~~~-l~~L~~L~Ls~N~--l~-~l-p~-~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l 305 (727)
T 4b8c_D 234 LQIF-NISANIFK-YDFLTRLYLNGNS--LT-EL-PA-EIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMV 305 (727)
T ss_dssp SCCS-CCCGGGGG-CCSCSCCBCTTSC--CS-CC-CG-GGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCC
T ss_pred CCCC-CCChhhcC-CCCCCEEEeeCCc--Cc-cc-Ch-hhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCC
Confidence 4444 67777777 8999999999999 66 45 77 7888999999999999998 7888899999999999999988
Q ss_pred cccCCC
Q 036214 83 TGSISL 88 (90)
Q Consensus 83 ~~~~p~ 88 (90)
. .+|.
T Consensus 306 ~-~lp~ 310 (727)
T 4b8c_D 306 T-TLPW 310 (727)
T ss_dssp C-CCCS
T ss_pred C-ccCh
Confidence 6 5564
No 60
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.08 E-value=4.7e-10 Score=74.26 Aligned_cols=65 Identities=20% Similarity=0.135 Sum_probs=28.3
Q ss_pred CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCccc
Q 036214 17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGS 85 (90)
Q Consensus 17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~~ 85 (90)
+++|+.|++++|. +.+.. +. .+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+.
T Consensus 98 l~~L~~L~L~~n~--l~~~~-~~-~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~ 162 (597)
T 3oja_B 98 AHTIQKLYMGFNA--IRYLP-PH-VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI 162 (597)
T ss_dssp CTTCCEEECCSSC--CCCCC-TT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred CCCCCEEECCCCc--CCCCC-HH-HHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCC
Confidence 4444444444444 33332 22 344444444444444444422222234444444444444444443
No 61
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.08 E-value=6.7e-10 Score=67.04 Aligned_cols=64 Identities=28% Similarity=0.352 Sum_probs=31.3
Q ss_pred CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214 17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG 84 (90)
Q Consensus 17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~ 84 (90)
+++|+.|++++|. +.+.. +. .+..+++|+.+++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus 132 l~~L~~L~Ls~n~--l~~~~-~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (270)
T 2o6q_A 132 LTKLTYLSLGYNE--LQSLP-KG-VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR 195 (270)
T ss_dssp CTTCCEEECCSSC--CCCCC-TT-TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CcCCCEEECCCCc--CCccC-Hh-HccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc
Confidence 4555555555555 43322 22 34445555555555555553333344555555555555555543
No 62
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.08 E-value=7.4e-10 Score=73.86 Aligned_cols=80 Identities=19% Similarity=0.158 Sum_probs=47.2
Q ss_pred CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214 3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL 82 (90)
Q Consensus 3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l 82 (90)
|.+.+..|..+.. +++|++|++++|. +.... +. .+..+++|+++++++|++++..|..+..+++|++|++++|.+
T Consensus 59 n~l~~~~~~~~~~-l~~L~~L~L~~n~--l~~l~-~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 133 (680)
T 1ziw_A 59 NTISKLEPELCQK-LPMLKVLNLQHNE--LSQLS-DK-TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL 133 (680)
T ss_dssp SCCCCCCTTHHHH-CTTCCEEECCSSC--CCCCC-TT-TTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCC
T ss_pred CccCccCHHHHhc-ccCcCEEECCCCc--cCccC-hh-hhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcc
Confidence 4455555555555 6666666666666 55432 22 466666666666666666644445566666666666666666
Q ss_pred cccCC
Q 036214 83 TGSIS 87 (90)
Q Consensus 83 ~~~~p 87 (90)
.+..|
T Consensus 134 ~~~~~ 138 (680)
T 1ziw_A 134 SSTKL 138 (680)
T ss_dssp SCCCC
T ss_pred cccCc
Confidence 55433
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.06 E-value=6.5e-10 Score=67.41 Aligned_cols=68 Identities=21% Similarity=0.238 Sum_probs=33.0
Q ss_pred HHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCc-CCCcchhhhhcCCCccEEeccCCcCcc
Q 036214 12 SIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASND-LRGSLPWCLANMTSLRILDVSYNQLTG 84 (90)
Q Consensus 12 ~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~-~~~~~p~~~~~l~~L~~l~l~~n~l~~ 84 (90)
.+.. +++|++|++++|. +.+.. +. .+..+++|+.+++++|. ++...+..+..+++|+.|++++|.+.+
T Consensus 51 ~~~~-~~~L~~L~l~~n~--l~~~~-~~-~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 119 (285)
T 1ozn_A 51 SFRA-CRNLTILWLHSNV--LARID-AA-AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE 119 (285)
T ss_dssp TTTT-CTTCCEEECCSSC--CCEEC-TT-TTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCC
T ss_pred Hccc-CCCCCEEECCCCc--cceeC-Hh-hcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCE
Confidence 3444 5555555555555 44433 33 44455555555555554 443334444445555555555554444
No 64
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.06 E-value=5.4e-10 Score=67.50 Aligned_cols=77 Identities=22% Similarity=0.190 Sum_probs=41.1
Q ss_pred CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214 3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL 82 (90)
Q Consensus 3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l 82 (90)
|.+.+..+..+.. +++|++|++++|. +.+.. +. .+..+++|+.+++++|.+++..+..+..+++|+.|++++|.+
T Consensus 38 n~l~~~~~~~~~~-l~~L~~L~l~~n~--l~~~~-~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 112 (276)
T 2z62_A 38 NPLRHLGSYSFFS-FPELQVLDLSRCE--IQTIE-DG-AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112 (276)
T ss_dssp CCCCEECTTTTTT-CTTCSEEECTTCC--CCEEC-TT-TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred CcccccCHhHhcc-ccCCcEEECCCCc--CCccC-HH-HccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCc
Confidence 3444333334444 6666666666666 44432 33 455556666666666666544444555555555555555555
Q ss_pred cc
Q 036214 83 TG 84 (90)
Q Consensus 83 ~~ 84 (90)
.+
T Consensus 113 ~~ 114 (276)
T 2z62_A 113 AS 114 (276)
T ss_dssp CC
T ss_pred cc
Confidence 44
No 65
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.06 E-value=4.2e-10 Score=69.59 Aligned_cols=78 Identities=23% Similarity=0.271 Sum_probs=61.5
Q ss_pred CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214 2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ 81 (90)
Q Consensus 2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~ 81 (90)
+|.+.+..+..+.. +++|+.|++++|. +.+.. +. .+..+++|+.+++++|+++ .+|..+..+++|+.+++++|.
T Consensus 202 ~n~i~~~~~~~l~~-l~~L~~L~L~~N~--l~~~~-~~-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 202 HNKIQAIELEDLLR-YSKLYRLGLGHNQ--IRMIE-NG-SLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp SSCCCCCCTTSSTT-CTTCSCCBCCSSC--CCCCC-TT-GGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSC
T ss_pred CCcCCccCHHHhcC-CCCCCEEECCCCc--CCcCC-hh-HhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCC
Confidence 45566665566777 8888888888888 77654 55 6778888889999988888 778888888888899998888
Q ss_pred Cccc
Q 036214 82 LTGS 85 (90)
Q Consensus 82 l~~~ 85 (90)
+++.
T Consensus 276 l~~~ 279 (332)
T 2ft3_A 276 ITKV 279 (332)
T ss_dssp CCBC
T ss_pred CCcc
Confidence 8764
No 66
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.05 E-value=1.1e-09 Score=66.05 Aligned_cols=64 Identities=27% Similarity=0.245 Sum_probs=32.8
Q ss_pred CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214 17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG 84 (90)
Q Consensus 17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~ 84 (90)
+++|++|++++|. +.+.. +. .+..+++|+.+++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus 108 l~~L~~L~l~~n~--l~~~~-~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 108 LVNLAELRLDRNQ--LKSLP-PR-VFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp CSSCCEEECCSSC--CCCCC-TT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred ccCCCEEECCCCc--cCeeC-HH-HhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence 4555555555555 44332 22 34455555555555555553333335555566666666655554
No 67
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.05 E-value=1.7e-09 Score=61.07 Aligned_cols=79 Identities=16% Similarity=0.134 Sum_probs=46.4
Q ss_pred CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcch---hhhhcCCCccEEecc
Q 036214 2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLP---WCLANMTSLRILDVS 78 (90)
Q Consensus 2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p---~~~~~l~~L~~l~l~ 78 (90)
+|.+.+.+|..+.. +++|++|++++|. +++...+. .+..+++|+.+++++|.+++..+ ..+..+++|+.++++
T Consensus 80 ~N~l~~~~~~~~~~-l~~L~~L~Ls~N~--l~~~~~~~-~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 155 (168)
T 2ell_A 80 ENRIFGGLDMLAEK-LPNLTHLNLSGNK--LKDISTLE-PLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGY 155 (168)
T ss_dssp SCCCCSCCCHHHHH-CTTCCEEECBSSS--CCSSGGGG-GGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTE
T ss_pred CCcCchHHHHHHhh-CCCCCEEeccCCc--cCcchhHH-HHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCC
Confidence 34555545555555 6667777777766 55431013 56666667777777776663322 256666667777776
Q ss_pred CCcCcc
Q 036214 79 YNQLTG 84 (90)
Q Consensus 79 ~n~l~~ 84 (90)
+|.+..
T Consensus 156 ~n~~~~ 161 (168)
T 2ell_A 156 DREDQE 161 (168)
T ss_dssp ETTSCB
T ss_pred CCChhh
Confidence 666554
No 68
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.04 E-value=7.5e-10 Score=70.85 Aligned_cols=79 Identities=18% Similarity=0.212 Sum_probs=53.2
Q ss_pred CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214 2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ 81 (90)
Q Consensus 2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~ 81 (90)
+|.+.+..+..|.. +++|++|++++|. +.... +. .+..+++|+.|++++|+++...+..+..+++|+.|++++|.
T Consensus 73 ~n~i~~~~~~~~~~-l~~L~~L~Ls~n~--i~~i~-~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 147 (440)
T 3zyj_A 73 ENQIQIIKVNSFKH-LRHLEILQLSRNH--IRTIE-IG-AFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP 147 (440)
T ss_dssp SCCCCEECTTTTSS-CSSCCEEECCSSC--CCEEC-GG-GGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCC
T ss_pred CCcCCeeCHHHhhC-CCCCCEEECCCCc--CCccC-hh-hccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCc
Confidence 35555555555666 7777777777777 66543 44 67777777777777777774444467777777777777777
Q ss_pred Cccc
Q 036214 82 LTGS 85 (90)
Q Consensus 82 l~~~ 85 (90)
+.+.
T Consensus 148 i~~~ 151 (440)
T 3zyj_A 148 IESI 151 (440)
T ss_dssp CCEE
T ss_pred cccc
Confidence 6653
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.04 E-value=8.7e-10 Score=66.58 Aligned_cols=78 Identities=27% Similarity=0.319 Sum_probs=44.2
Q ss_pred CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCC-cchhhhhcCCCccEEeccCCc
Q 036214 3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRG-SLPWCLANMTSLRILDVSYNQ 81 (90)
Q Consensus 3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~-~~p~~~~~l~~L~~l~l~~n~ 81 (90)
|.+.+..+..+.. +++|++|++++|. +.+.. +. .+..+++|+.+++++|.+++ .+|..+..+++|+.|++++|.
T Consensus 86 n~l~~~~~~~~~~-l~~L~~L~l~~n~--l~~~~-~~-~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~ 160 (276)
T 2z62_A 86 NPIQSLALGAFSG-LSSLQKLVAVETN--LASLE-NF-PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160 (276)
T ss_dssp CCCCEECTTTTTT-CTTCCEEECTTSC--CCCST-TC-CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred CccCccChhhhcC-CccccEEECCCCC--ccccC-ch-hcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC
Confidence 3444443344444 5555556555555 44432 32 35556666666666666653 246666666777777777776
Q ss_pred Cccc
Q 036214 82 LTGS 85 (90)
Q Consensus 82 l~~~ 85 (90)
+.+.
T Consensus 161 l~~~ 164 (276)
T 2z62_A 161 IQSI 164 (276)
T ss_dssp CCEE
T ss_pred CCcC
Confidence 6653
No 70
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.03 E-value=4.5e-10 Score=68.68 Aligned_cols=78 Identities=22% Similarity=0.309 Sum_probs=54.2
Q ss_pred CcCCccchhHHHhhCCCCcEEeccCCcccccc-ccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214 3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINS-SMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ 81 (90)
Q Consensus 3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~-~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~ 81 (90)
|.+.+..+..+.. +++|++|++++|. +.+ .. +. .+..+++|+.+++++|.+++..|..+..+++|+.|++++|.
T Consensus 136 n~l~~~~~~~~~~-l~~L~~L~l~~n~--l~~~~~-~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 210 (306)
T 2z66_A 136 THTRVAFNGIFNG-LSSLEVLKMAGNS--FQENFL-PD-IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 210 (306)
T ss_dssp SCCEECSTTTTTT-CTTCCEEECTTCE--EGGGEE-CS-CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred CcCCccchhhccc-CcCCCEEECCCCc--cccccc-hh-HHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc
Confidence 4455555555555 7777777777777 554 23 44 66777778888888888775556777777788888888887
Q ss_pred Cccc
Q 036214 82 LTGS 85 (90)
Q Consensus 82 l~~~ 85 (90)
+.+.
T Consensus 211 l~~~ 214 (306)
T 2z66_A 211 FFSL 214 (306)
T ss_dssp CSBC
T ss_pred cCcc
Confidence 7664
No 71
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.03 E-value=9.5e-10 Score=68.52 Aligned_cols=78 Identities=21% Similarity=0.189 Sum_probs=52.7
Q ss_pred CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214 2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ 81 (90)
Q Consensus 2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~ 81 (90)
+|.+.+..+..+.. +++|+.|++++|. +.+.. +. .+..+++|+.+++++|++++..+..+..+++|++|++++|.
T Consensus 61 ~n~i~~~~~~~~~~-l~~L~~L~L~~n~--l~~~~-~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 135 (353)
T 2z80_A 61 NNRITYISNSDLQR-CVNLQALVLTSNG--INTIE-ED-SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP 135 (353)
T ss_dssp TSCCCEECTTTTTT-CTTCCEEECTTSC--CCEEC-TT-TTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCC
T ss_pred CCcCcccCHHHhcc-CCCCCEEECCCCc--cCccC-Hh-hcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCC
Confidence 34555444445656 7778888888777 66554 44 57777778888888887774444447777778888887777
Q ss_pred Ccc
Q 036214 82 LTG 84 (90)
Q Consensus 82 l~~ 84 (90)
+.+
T Consensus 136 l~~ 138 (353)
T 2z80_A 136 YKT 138 (353)
T ss_dssp CSS
T ss_pred Ccc
Confidence 764
No 72
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.03 E-value=1.2e-09 Score=68.72 Aligned_cols=17 Identities=35% Similarity=0.415 Sum_probs=6.9
Q ss_pred hcCCCccEEeccCCcCc
Q 036214 67 ANMTSLRILDVSYNQLT 83 (90)
Q Consensus 67 ~~l~~L~~l~l~~n~l~ 83 (90)
..+++|+.|++++|.+.
T Consensus 138 ~~l~~L~~L~L~~n~l~ 154 (390)
T 3o6n_A 138 HNTPKLTTLSMSNNNLE 154 (390)
T ss_dssp TTCTTCCEEECCSSCCC
T ss_pred cCCCCCcEEECCCCccC
Confidence 33444444444444433
No 73
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.03 E-value=5e-10 Score=72.94 Aligned_cols=81 Identities=22% Similarity=0.215 Sum_probs=50.6
Q ss_pred CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCC-cchhhhhcCCCccEEeccCC
Q 036214 2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRG-SLPWCLANMTSLRILDVSYN 80 (90)
Q Consensus 2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~-~~p~~~~~l~~L~~l~l~~n 80 (90)
+|.+.+..|..|.. +++|++|++++|. +.+.. +. .+..+++|+++++++|.+++ ..|..+..+++|+.|++++|
T Consensus 59 ~n~i~~~~~~~~~~-l~~L~~L~Ls~n~--l~~~~-~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n 133 (549)
T 2z81_A 59 SSRINTIEGDAFYS-LGSLEHLDLSDNH--LSSLS-SS-WFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNV 133 (549)
T ss_dssp TSCCCEECTTTTTT-CTTCCEEECTTSC--CCSCC-HH-HHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEES
T ss_pred CCCcCccChhhccc-cccCCEEECCCCc--cCccC-HH-HhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCC
Confidence 35555555555666 7777777777777 66553 44 56677777777777777664 23455666666666666666
Q ss_pred cCcccCC
Q 036214 81 QLTGSIS 87 (90)
Q Consensus 81 ~l~~~~p 87 (90)
.+.+.+|
T Consensus 134 ~~~~~~~ 140 (549)
T 2z81_A 134 ETFSEIR 140 (549)
T ss_dssp SSCCEEC
T ss_pred ccccccC
Confidence 6444443
No 74
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.03 E-value=7.9e-10 Score=71.15 Aligned_cols=81 Identities=19% Similarity=0.225 Sum_probs=60.1
Q ss_pred CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214 2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ 81 (90)
Q Consensus 2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~ 81 (90)
+|.+.+..|..|.. +++|++|++++|. +.... +. .+..+++|+.+++++|.+.+..+..+..+++|+.|++++|.
T Consensus 65 ~n~i~~~~~~~~~~-l~~L~~L~L~~n~--l~~~~-~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~ 139 (477)
T 2id5_A 65 ENIVSAVEPGAFNN-LFNLRTLGLRSNR--LKLIP-LG-VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND 139 (477)
T ss_dssp TSCCCEECTTTTTT-CTTCCEEECCSSC--CCSCC-TT-SSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT
T ss_pred CCccCEeChhhhhC-CccCCEEECCCCc--CCccC-cc-cccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc
Confidence 45666666777777 8888888888888 66543 33 56778888888888888876667777788888888888887
Q ss_pred CcccCC
Q 036214 82 LTGSIS 87 (90)
Q Consensus 82 l~~~~p 87 (90)
+.+..|
T Consensus 140 l~~~~~ 145 (477)
T 2id5_A 140 LVYISH 145 (477)
T ss_dssp CCEECT
T ss_pred cceeCh
Confidence 766543
No 75
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.03 E-value=5e-10 Score=72.69 Aligned_cols=81 Identities=22% Similarity=0.238 Sum_probs=46.4
Q ss_pred CCcCCccchhHHHhhCCCCcEEeccCCcccccc--ccchhhhhcCcccccEEEccCCcCCCcchhh-hhcCCCccEEecc
Q 036214 2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINS--SMILDQGLCSLVHLQELYIASNDLRGSLPWC-LANMTSLRILDVS 78 (90)
Q Consensus 2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~--~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~-~~~l~~L~~l~l~ 78 (90)
+|.+.+.+|..+.. +++|++|++++|. +.+ .. |. .+..+++|+.+++++|.+++.+|.. +..+++|+.++++
T Consensus 333 ~n~l~~~~~~~~~~-l~~L~~L~L~~N~--l~~l~~~-~~-~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls 407 (520)
T 2z7x_B 333 NNLLTDTVFENCGH-LTELETLILQMNQ--LKELSKI-AE-MTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS 407 (520)
T ss_dssp SSCCCTTTTTTCCC-CSSCCEEECCSSC--CCBHHHH-HH-HHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECC
T ss_pred CCccChhhhhhhcc-CCCCCEEEccCCc--cCccccc-hH-HHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECc
Confidence 35555555555555 6666666666666 443 22 33 4556666666666666666434442 4555666666666
Q ss_pred CCcCcccCC
Q 036214 79 YNQLTGSIS 87 (90)
Q Consensus 79 ~n~l~~~~p 87 (90)
+|.+++.+|
T Consensus 408 ~N~l~~~~~ 416 (520)
T 2z7x_B 408 SNILTDTIF 416 (520)
T ss_dssp SSCCCGGGG
T ss_pred CCCCCcchh
Confidence 666655443
No 76
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.03 E-value=5e-10 Score=73.12 Aligned_cols=81 Identities=22% Similarity=0.322 Sum_probs=61.4
Q ss_pred CCcCCccchhHHHhhCCCCcEEeccCCccccc-cccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCC
Q 036214 2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGIN-SSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYN 80 (90)
Q Consensus 2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~-~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n 80 (90)
+|.+.+..|..+.. +++|++|++++|. +. +.. |. .+..+++|+.+++++|++++..|..+..+++|+.+++++|
T Consensus 430 ~n~l~~~~~~~~~~-l~~L~~L~l~~n~--l~~~~~-p~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 504 (570)
T 2z63_A 430 HTHTRVAFNGIFNG-LSSLEVLKMAGNS--FQENFL-PD-IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504 (570)
T ss_dssp TSCCEECCTTTTTT-CTTCCEEECTTCE--EGGGEE-CS-CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCcccccchhhhhc-CCcCcEEECcCCc--Cccccc-hh-hhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC
Confidence 34555556666666 8888888888888 65 344 65 6778888888888888888666788888888888888888
Q ss_pred cCcccCC
Q 036214 81 QLTGSIS 87 (90)
Q Consensus 81 ~l~~~~p 87 (90)
.+++..|
T Consensus 505 ~l~~~~~ 511 (570)
T 2z63_A 505 QLKSVPD 511 (570)
T ss_dssp CCSCCCT
T ss_pred cCCCCCH
Confidence 8887644
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.02 E-value=1.1e-09 Score=66.92 Aligned_cols=77 Identities=30% Similarity=0.316 Sum_probs=57.4
Q ss_pred CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214 3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL 82 (90)
Q Consensus 3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l 82 (90)
|.+. .+|..+.. +++|++|++++|. +++.. +. .+..+++|+.+++++|++++..+..+..+++|+.|++++|++
T Consensus 87 N~l~-~l~~~~~~-l~~L~~L~l~~N~--l~~l~-~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 87 NQLQ-SLPLLGQT-LPALTVLDVSFNR--LTSLP-LG-ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp SCCS-SCCCCTTT-CTTCCEEECCSSC--CCCCC-SS-TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred CcCC-cCchhhcc-CCCCCEEECCCCc--CcccC-HH-HHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence 3443 55666666 8888888888888 66653 44 678888888888888888855556677888888888888888
Q ss_pred ccc
Q 036214 83 TGS 85 (90)
Q Consensus 83 ~~~ 85 (90)
++.
T Consensus 161 ~~l 163 (290)
T 1p9a_G 161 TEL 163 (290)
T ss_dssp SCC
T ss_pred Ccc
Confidence 753
No 78
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.02 E-value=7.9e-10 Score=72.81 Aligned_cols=78 Identities=15% Similarity=0.130 Sum_probs=63.2
Q ss_pred CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214 2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ 81 (90)
Q Consensus 2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~ 81 (90)
+|.+.+..|..|.. +++|++|++++|. +.+.. +. .+..+++|+.+++++|.+++..+..+..+++|++|++++|.
T Consensus 66 ~n~i~~~~~~~~~~-l~~L~~L~Ls~n~--l~~~~-~~-~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~ 140 (606)
T 3t6q_A 66 RCQIYWIHEDTFQS-QHRLDTLVLTANP--LIFMA-ET-ALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH 140 (606)
T ss_dssp TCCCCEECTTTTTT-CTTCCEEECTTCC--CSEEC-TT-TTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC
T ss_pred CCccceeChhhccC-ccccCeeeCCCCc--ccccC-hh-hhcccccccEeeccccCcccCCcchhccCCcccEEECCCCc
Confidence 46677777777877 8999999999998 77665 66 78888889999999998885556778888888888888888
Q ss_pred Ccc
Q 036214 82 LTG 84 (90)
Q Consensus 82 l~~ 84 (90)
+.+
T Consensus 141 l~~ 143 (606)
T 3t6q_A 141 ISS 143 (606)
T ss_dssp CCC
T ss_pred ccc
Confidence 876
No 79
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.02 E-value=7e-10 Score=72.81 Aligned_cols=75 Identities=28% Similarity=0.380 Sum_probs=42.4
Q ss_pred CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214 2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ 81 (90)
Q Consensus 2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~ 81 (90)
+|.+.+..+..+.. +++|++|++++|. +++.. +. .+..+++|+++++++|+++ .+|.. .+++|+.|++++|.
T Consensus 61 ~N~i~~~~~~~~~~-l~~L~~L~Ls~N~--l~~~~-~~-~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~ 132 (562)
T 3a79_B 61 QNSISELRMPDISF-LSELRVLRLSHNR--IRSLD-FH-VFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFND 132 (562)
T ss_dssp SSCCCCCCGGGTTT-CTTCCEEECCSCC--CCEEC-TT-TTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSC
T ss_pred CCCccccChhhhcc-CCCccEEECCCCC--CCcCC-HH-HhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCC
Confidence 34455444455555 6666666666666 55543 44 5566666666666666665 44443 45555666666555
Q ss_pred Ccc
Q 036214 82 LTG 84 (90)
Q Consensus 82 l~~ 84 (90)
+.+
T Consensus 133 l~~ 135 (562)
T 3a79_B 133 FDV 135 (562)
T ss_dssp CSB
T ss_pred ccc
Confidence 554
No 80
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.01 E-value=1.1e-09 Score=63.48 Aligned_cols=66 Identities=24% Similarity=0.366 Sum_probs=48.7
Q ss_pred hHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214 11 QSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ 81 (90)
Q Consensus 11 ~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~ 81 (90)
+.+.. +++|++|++++|. +.+.. +. .+..+++|+.+++++|.+++..+..+..+++|+.|++++|.
T Consensus 82 ~~l~~-l~~L~~L~l~~n~--l~~~~-~~-~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~ 147 (197)
T 4ezg_A 82 NPISG-LSNLERLRIMGKD--VTSDK-IP-NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG 147 (197)
T ss_dssp GGGTT-CTTCCEEEEECTT--CBGGG-SC-CCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred hhhhc-CCCCCEEEeECCc--cCccc-Ch-hhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCC
Confidence 35555 7777888888777 66544 55 67777788888888888876667777788888888888876
No 81
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.01 E-value=2.7e-10 Score=78.64 Aligned_cols=75 Identities=21% Similarity=0.264 Sum_probs=53.8
Q ss_pred cchhHHH--hhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCc-CCC-cchhhhhcCC-------CccEEe
Q 036214 8 SFLQSIG--ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASND-LRG-SLPWCLANMT-------SLRILD 76 (90)
Q Consensus 8 ~~p~~~~--~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~-~~~-~~p~~~~~l~-------~L~~l~ 76 (90)
.+|+.+. . +++|+.|++++|. +.+.+ |. .+..+++|+.+++++|+ +++ .+|..+..+. +|+.|+
T Consensus 480 ~iP~~l~f~~-L~~L~~L~Ls~N~--l~~~i-P~-~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~ 554 (876)
T 4ecn_A 480 YENEELSWSN-LKDLTDVELYNCP--NMTQL-PD-FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFY 554 (876)
T ss_dssp HTTSCCCGGG-CTTCCEEEEESCT--TCCSC-CG-GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEE
T ss_pred cCChhhhhcc-CCCCCEEECcCCC--CCccC-hH-HHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEE
Confidence 3777765 6 7788888888887 67766 76 77777788888888887 776 6776665554 777777
Q ss_pred ccCCcCcccCCC
Q 036214 77 VSYNQLTGSISL 88 (90)
Q Consensus 77 l~~n~l~~~~p~ 88 (90)
+++|.+. .+|.
T Consensus 555 Ls~N~L~-~ip~ 565 (876)
T 4ecn_A 555 MGYNNLE-EFPA 565 (876)
T ss_dssp CCSSCCC-BCCC
T ss_pred eeCCcCC-ccCC
Confidence 7777777 5554
No 82
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.01 E-value=1.2e-10 Score=71.64 Aligned_cols=35 Identities=26% Similarity=0.106 Sum_probs=13.8
Q ss_pred cccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214 47 HLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ 81 (90)
Q Consensus 47 ~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~ 81 (90)
+|+++++++|++++..+..+..+++|+.|++++|.
T Consensus 150 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 184 (312)
T 1wwl_A 150 GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP 184 (312)
T ss_dssp TCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCT
T ss_pred CCcEEEeeCCCCccchHHHhccCCCCCEEECCCCC
Confidence 33444444444333332333344444444444443
No 83
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.01 E-value=3.5e-10 Score=77.44 Aligned_cols=64 Identities=30% Similarity=0.329 Sum_probs=29.8
Q ss_pred CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhh--hhcCCCccEEeccCCcCcc
Q 036214 17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWC--LANMTSLRILDVSYNQLTG 84 (90)
Q Consensus 17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~--~~~l~~L~~l~l~~n~l~~ 84 (90)
+++|++|++++|. +.+.. |. .+..+++|+.|++++|.+++..+.. +..+++|++|++++|.+.+
T Consensus 72 L~~L~~L~Ls~N~--l~~~~-p~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~ 137 (844)
T 3j0a_A 72 LPNLRILDLGSSK--IYFLH-PD-AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS 137 (844)
T ss_dssp CTTCCEEECTTCC--CCEEC-TT-SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCC
T ss_pred CCCCCEEECCCCc--CcccC-Hh-HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccc
Confidence 4445555555444 44333 33 4444445555555555444333332 4444555555555554444
No 84
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.01 E-value=5.9e-10 Score=63.52 Aligned_cols=62 Identities=29% Similarity=0.214 Sum_probs=33.5
Q ss_pred CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchh--hhhcCCCccEEeccCCcCc
Q 036214 17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPW--CLANMTSLRILDVSYNQLT 83 (90)
Q Consensus 17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~--~~~~l~~L~~l~l~~n~l~ 83 (90)
+++|++|++++|. +++.. +. .+..+++|+.+++++|.++ .+|. .+..+++|+.+++++|.+.
T Consensus 63 l~~L~~L~Ls~N~--l~~~~-~~-~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 63 LRRLKTLLVNNNR--ICRIG-EG-LDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp CSSCCEEECCSSC--CCEEC-SC-HHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred CCCCCEEECCCCc--ccccC-cc-hhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC
Confidence 5555566666555 44321 22 2355555666666666654 4444 4555566666666666554
No 85
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.00 E-value=1.6e-09 Score=72.21 Aligned_cols=81 Identities=20% Similarity=0.093 Sum_probs=65.1
Q ss_pred CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214 2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ 81 (90)
Q Consensus 2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~ 81 (90)
+|.+.+..+..|.. +++|++|++++|. +.+.. +. .+..+++|+.+++++|.++...+..+..+++|++|++++|.
T Consensus 34 ~n~l~~~~~~~~~~-l~~L~~L~Ls~n~--l~~~~-~~-~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~ 108 (680)
T 1ziw_A 34 HNQLRRLPAANFTR-YSQLTSLDVGFNT--ISKLE-PE-LCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 108 (680)
T ss_dssp SSCCCCCCGGGGGG-GTTCSEEECCSSC--CCCCC-TT-HHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred CCCCCCcCHHHHhC-CCcCcEEECCCCc--cCccC-HH-HHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCc
Confidence 46666666666777 9999999999999 77765 66 78889999999999999984444468899999999999998
Q ss_pred CcccCC
Q 036214 82 LTGSIS 87 (90)
Q Consensus 82 l~~~~p 87 (90)
+.+..|
T Consensus 109 l~~~~~ 114 (680)
T 1ziw_A 109 IQKIKN 114 (680)
T ss_dssp CCCCCS
T ss_pred cCccCh
Confidence 876543
No 86
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.00 E-value=1.4e-09 Score=71.98 Aligned_cols=79 Identities=22% Similarity=0.140 Sum_probs=66.0
Q ss_pred CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214 2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ 81 (90)
Q Consensus 2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~ 81 (90)
+|.+.+..|..|.. +++|+.|++++|. +.+. |...+..+++|+.+++++|.+++..|..+..+++|+.|++++|.
T Consensus 108 ~n~l~~~~~~~~~~-l~~L~~L~L~~n~--l~~l--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 182 (597)
T 3oja_B 108 FNAIRYLPPHVFQN-VPLLTVLVLERND--LSSL--PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 182 (597)
T ss_dssp SSCCCCCCTTTTTT-CTTCCEEECCSSC--CCCC--CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC
T ss_pred CCcCCCCCHHHHcC-CCCCCEEEeeCCC--CCCC--CHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC
Confidence 46777766666777 9999999999999 7764 44157889999999999999997778889999999999999999
Q ss_pred Cccc
Q 036214 82 LTGS 85 (90)
Q Consensus 82 l~~~ 85 (90)
+.+.
T Consensus 183 l~~~ 186 (597)
T 3oja_B 183 LTHV 186 (597)
T ss_dssp CSBC
T ss_pred CCCc
Confidence 8763
No 87
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.00 E-value=1.2e-09 Score=70.19 Aligned_cols=63 Identities=19% Similarity=0.279 Sum_probs=30.6
Q ss_pred CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCc
Q 036214 17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLT 83 (90)
Q Consensus 17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~ 83 (90)
+++|+.|++++|. +.+.. +. .+..+++|+.+++++|++++..+..+..+++|+.|++++|+++
T Consensus 217 l~~L~~L~Ls~N~--l~~~~-~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 279 (452)
T 3zyi_A 217 LVGLEELEMSGNH--FPEIR-PG-SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279 (452)
T ss_dssp CTTCCEEECTTSC--CSEEC-GG-GGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred cccccEEECcCCc--CcccC-cc-cccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC
Confidence 4455555555555 44433 33 4444555555555555554444444444555555555555444
No 88
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.97 E-value=1.2e-09 Score=69.86 Aligned_cols=64 Identities=25% Similarity=0.346 Sum_probs=32.0
Q ss_pred CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214 17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG 84 (90)
Q Consensus 17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~ 84 (90)
+++|+.|++++|. +.+.. +. .+..+++|+.+++++|++++..+..+..+++|+.|++++|++++
T Consensus 206 l~~L~~L~Ls~N~--l~~~~-~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 269 (440)
T 3zyj_A 206 LIKLDELDLSGNH--LSAIR-PG-SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL 269 (440)
T ss_dssp CSSCCEEECTTSC--CCEEC-TT-TTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCC
T ss_pred CcccCEEECCCCc--cCccC-hh-hhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCc
Confidence 4555555555555 44433 33 44555555555555555554444444455555555555555443
No 89
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.96 E-value=2.7e-09 Score=67.16 Aligned_cols=78 Identities=22% Similarity=0.146 Sum_probs=62.7
Q ss_pred CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214 2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ 81 (90)
Q Consensus 2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~ 81 (90)
+|.+.+..|..+.. +++|++|++++|. +... +...+..+++|+.+++++|.+++..+..+..+++|+.|++++|.
T Consensus 102 ~n~l~~~~~~~~~~-l~~L~~L~L~~n~--l~~l--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 176 (390)
T 3o6n_A 102 FNAIRYLPPHVFQN-VPLLTVLVLERND--LSSL--PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 176 (390)
T ss_dssp SSCCCCCCTTTTTT-CTTCCEEECCSSC--CCCC--CTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC
T ss_pred CCCCCcCCHHHhcC-CCCCCEEECCCCc--cCcC--CHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc
Confidence 45666666666677 8999999999999 6654 44146788999999999999987767788999999999999998
Q ss_pred Ccc
Q 036214 82 LTG 84 (90)
Q Consensus 82 l~~ 84 (90)
+.+
T Consensus 177 l~~ 179 (390)
T 3o6n_A 177 LTH 179 (390)
T ss_dssp CSB
T ss_pred CCc
Confidence 875
No 90
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.95 E-value=2.1e-09 Score=66.11 Aligned_cols=44 Identities=23% Similarity=0.178 Sum_probs=20.4
Q ss_pred cCcccccEEEccCCcCCC--cch-hhhhcCCCccEEeccCCcCcccC
Q 036214 43 CSLVHLQELYIASNDLRG--SLP-WCLANMTSLRILDVSYNQLTGSI 86 (90)
Q Consensus 43 ~~l~~l~~l~l~~n~~~~--~~p-~~~~~l~~L~~l~l~~n~l~~~~ 86 (90)
..+++|+.+++++|++++ ..+ ..+..+++|+.|++++|.+.+..
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 244 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA 244 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc
Confidence 344445555555555541 111 22234455555555555555543
No 91
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.94 E-value=2.5e-09 Score=69.53 Aligned_cols=76 Identities=18% Similarity=0.202 Sum_probs=44.0
Q ss_pred CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214 2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ 81 (90)
Q Consensus 2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~ 81 (90)
+|.+.+..|..+...+++|+.|++++|. +++. + ....++.|+.+++++|.++ .+|..+..+++|+.|++++|.
T Consensus 153 ~N~l~~~~~~~l~~~l~~L~~L~Ls~N~--l~~~--~--~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~Ls~N~ 225 (487)
T 3oja_A 153 LNEIDTVNFAELAASSDTLEHLNLQYNF--IYDV--K--GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNK 225 (487)
T ss_dssp TSCCCEEEGGGGGGGTTTCCEEECTTSC--CCEE--E--CCCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSC
T ss_pred CCCCCCcChHHHhhhCCcccEEecCCCc--cccc--c--ccccCCCCCEEECCCCCCC-CCCHhHcCCCCccEEEecCCc
Confidence 3455555555554225556666666665 4442 1 2234566677777777776 344446667777777777777
Q ss_pred Ccc
Q 036214 82 LTG 84 (90)
Q Consensus 82 l~~ 84 (90)
+.+
T Consensus 226 l~~ 228 (487)
T 3oja_A 226 LVL 228 (487)
T ss_dssp CCE
T ss_pred Ccc
Confidence 765
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.94 E-value=7.3e-10 Score=65.72 Aligned_cols=78 Identities=14% Similarity=0.157 Sum_probs=44.9
Q ss_pred CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccC-CcCCCcchhhhhcCCCccEEeccCCc
Q 036214 3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIAS-NDLRGSLPWCLANMTSLRILDVSYNQ 81 (90)
Q Consensus 3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~-n~~~~~~p~~~~~l~~L~~l~l~~n~ 81 (90)
|++.+..+..+.. +++|++|++++|.. ++... +. .+..+++|+.+++++ |.++...+..+..+++|+.+++++|.
T Consensus 41 n~l~~i~~~~~~~-l~~L~~L~l~~n~~-l~~i~-~~-~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~ 116 (239)
T 2xwt_C 41 THLRTIPSHAFSN-LPNISRIYVSIDVT-LQQLE-SH-SFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG 116 (239)
T ss_dssp CCCSEECTTTTTT-CTTCCEEEEECCSS-CCEEC-TT-TEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC
T ss_pred CcceEECHHHccC-CCCCcEEeCCCCCC-cceeC-Hh-HcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC
Confidence 4444443434555 66777777776630 22222 33 466666777777776 66663333456666667777776666
Q ss_pred Ccc
Q 036214 82 LTG 84 (90)
Q Consensus 82 l~~ 84 (90)
+.+
T Consensus 117 l~~ 119 (239)
T 2xwt_C 117 LKM 119 (239)
T ss_dssp CCS
T ss_pred Ccc
Confidence 654
No 93
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.93 E-value=1.5e-09 Score=74.34 Aligned_cols=79 Identities=16% Similarity=0.148 Sum_probs=34.9
Q ss_pred CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214 3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL 82 (90)
Q Consensus 3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l 82 (90)
|.+.+..|..|.. +++|++|++++|. ..+.+.+. .+..+++|++|++++|.+++..|..+..+++|++|++++|.+
T Consensus 34 N~i~~i~~~~~~~-l~~L~~LdLs~n~--~~~~i~~~-~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l 109 (844)
T 3j0a_A 34 NYIRTVTASSFPF-LEQLQLLELGSQY--TPLTIDKE-AFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGL 109 (844)
T ss_dssp CCCCEECSSSCSS-CCSCSEEEECTTC--CCCEECTT-TTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCC
T ss_pred CcCCccChhHCcc-cccCeEEeCCCCC--CccccCHH-HhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCC
Confidence 3344333444444 4445555554443 22222022 344444455555555544433344444444555555554444
Q ss_pred ccc
Q 036214 83 TGS 85 (90)
Q Consensus 83 ~~~ 85 (90)
.+.
T Consensus 110 ~~~ 112 (844)
T 3j0a_A 110 SDA 112 (844)
T ss_dssp SSC
T ss_pred Ccc
Confidence 443
No 94
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.90 E-value=2.9e-09 Score=66.34 Aligned_cols=74 Identities=24% Similarity=0.232 Sum_probs=48.2
Q ss_pred CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchh--hhhcCCCccEEeccC
Q 036214 2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPW--CLANMTSLRILDVSY 79 (90)
Q Consensus 2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~--~~~~l~~L~~l~l~~ 79 (90)
+|.+.+..+..+.. +++|++|++++|. +++.. +. .+..+++|+.+++++|.++ .+|. .+..+++|+.+++++
T Consensus 85 ~n~l~~~~~~~~~~-l~~L~~L~Ls~n~--l~~~~-~~-~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~ 158 (353)
T 2z80_A 85 SNGINTIEEDSFSS-LGSLEHLDLSYNY--LSNLS-SS-WFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGN 158 (353)
T ss_dssp TSCCCEECTTTTTT-CTTCCEEECCSSC--CSSCC-HH-HHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEE
T ss_pred CCccCccCHhhcCC-CCCCCEEECCCCc--CCcCC-Hh-HhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCC
Confidence 35555555555666 7777777777777 65542 33 4667777777777777777 4443 566677777777776
Q ss_pred Cc
Q 036214 80 NQ 81 (90)
Q Consensus 80 n~ 81 (90)
|.
T Consensus 159 n~ 160 (353)
T 2z80_A 159 MD 160 (353)
T ss_dssp SS
T ss_pred Cc
Confidence 63
No 95
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.90 E-value=2.4e-09 Score=70.25 Aligned_cols=81 Identities=22% Similarity=0.220 Sum_probs=45.8
Q ss_pred CCcCCccchhHHHhhCCCCcEEeccCCccccccc--cchhhhhcCcccccEEEccCCcCCCcchh-hhhcCCCccEEecc
Q 036214 2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSS--MILDQGLCSLVHLQELYIASNDLRGSLPW-CLANMTSLRILDVS 78 (90)
Q Consensus 2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~--~~~~~~~~~l~~l~~l~l~~n~~~~~~p~-~~~~l~~L~~l~l~ 78 (90)
+|.+.+..|..+.. +++|++|++++|. +++. . +. .+..+++|+.+++++|.+++.+|. .+..+++|+.++++
T Consensus 362 ~n~l~~~~~~~~~~-l~~L~~L~L~~N~--l~~~~~~-~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~ 436 (562)
T 3a79_B 362 QNVFTDSVFQGCST-LKRLQTLILQRNG--LKNFFKV-AL-MTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLS 436 (562)
T ss_dssp SSCCCTTTTTTCCS-CSSCCEEECCSSC--CCBTTHH-HH-TTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECC
T ss_pred CCccccchhhhhcc-cCCCCEEECCCCC--cCCcccc-hh-hhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECC
Confidence 35555555655555 6666666666666 5442 1 22 455666666666666666643443 34555556666666
Q ss_pred CCcCcccCC
Q 036214 79 YNQLTGSIS 87 (90)
Q Consensus 79 ~n~l~~~~p 87 (90)
+|.+++.+|
T Consensus 437 ~n~l~~~~~ 445 (562)
T 3a79_B 437 SNMLTGSVF 445 (562)
T ss_dssp SSCCCGGGG
T ss_pred CCCCCcchh
Confidence 666555443
No 96
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.87 E-value=1.9e-09 Score=66.21 Aligned_cols=79 Identities=16% Similarity=-0.017 Sum_probs=49.9
Q ss_pred CCcCCccchhHH--HhhCCCCcEEeccCCccccccccchh---hhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEe
Q 036214 2 RSALNTSFLQSI--GESMSSLKYLSLSGSTIGINSSMILD---QGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILD 76 (90)
Q Consensus 2 ~n~~~~~~p~~~--~~~l~~l~~L~l~~n~~~~~~~~~~~---~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~ 76 (90)
+|.+.+..|..+ .. +++|+.|++++|. +.+.. +. ..+..+++|+.+++++|.+.+..+..+..+++|+.|+
T Consensus 100 ~n~l~~~~~~~~~~~~-~~~L~~L~Ls~n~--i~~~~-~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 175 (310)
T 4glp_A 100 DLKITGTMPPLPLEAT-GLALSSLRLRNVS--WATGR-SWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLD 175 (310)
T ss_dssp SCCCBSCCCCCSSSCC-CBCCSSCEEESCC--CSSTT-SSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEE
T ss_pred CCEeccchhhhhhhcc-CCCCCEEEeeccc--ccchh-hhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEE
Confidence 355666666555 44 6677777777777 55432 20 0334566777777777777655556677777777777
Q ss_pred ccCCcCcc
Q 036214 77 VSYNQLTG 84 (90)
Q Consensus 77 l~~n~l~~ 84 (90)
+++|++.+
T Consensus 176 Ls~N~l~~ 183 (310)
T 4glp_A 176 LSDNPGLG 183 (310)
T ss_dssp CCSCTTCH
T ss_pred CCCCCCcc
Confidence 77776543
No 97
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.87 E-value=5.9e-09 Score=64.44 Aligned_cols=17 Identities=12% Similarity=0.395 Sum_probs=8.6
Q ss_pred hhcCCCccEEeccCCcC
Q 036214 66 LANMTSLRILDVSYNQL 82 (90)
Q Consensus 66 ~~~l~~L~~l~l~~n~l 82 (90)
+..+++|+.+++++|.+
T Consensus 143 ~~~l~~L~~L~l~~n~l 159 (332)
T 2ft3_A 143 FSGLRNMNCIEMGGNPL 159 (332)
T ss_dssp GSSCSSCCEEECCSCCC
T ss_pred hCCCccCCEEECCCCcc
Confidence 44445555555555544
No 98
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.87 E-value=6.1e-09 Score=64.27 Aligned_cols=39 Identities=28% Similarity=0.485 Sum_probs=17.3
Q ss_pred CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCC
Q 036214 17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLR 59 (90)
Q Consensus 17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~ 59 (90)
+++|++|++++|. +.+.. +. .+..+++|+.+++++|.++
T Consensus 75 l~~L~~L~L~~n~--l~~~~-~~-~~~~l~~L~~L~Ls~n~l~ 113 (330)
T 1xku_A 75 LKNLHTLILINNK--ISKIS-PG-AFAPLVKLERLYLSKNQLK 113 (330)
T ss_dssp CTTCCEEECCSSC--CCCBC-TT-TTTTCTTCCEEECCSSCCS
T ss_pred CCCCCEEECCCCc--CCeeC-HH-HhcCCCCCCEEECCCCcCC
Confidence 4444444444444 33332 33 3444444444444444433
No 99
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.87 E-value=8.3e-09 Score=63.57 Aligned_cols=75 Identities=19% Similarity=0.215 Sum_probs=43.1
Q ss_pred CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214 3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL 82 (90)
Q Consensus 3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l 82 (90)
|.+.+..+..+...+++|++|++++|. +++. + ....+++|+.+++++|.++ .+|..+..+++|+.+++++|.+
T Consensus 154 N~l~~~~~~~~~~~l~~L~~L~L~~N~--l~~~--~--~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l 226 (317)
T 3o53_A 154 NEIDTVNFAELAASSDTLEHLNLQYNF--IYDV--K--GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL 226 (317)
T ss_dssp SCCCEEEGGGGGGGTTTCCEEECTTSC--CCEE--E--CCCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCC
T ss_pred CCCCcccHHHHhhccCcCCEEECCCCc--Cccc--c--cccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCcc
Confidence 445544444443225666666666666 4432 2 2234566667777777666 4444466667777777777766
Q ss_pred cc
Q 036214 83 TG 84 (90)
Q Consensus 83 ~~ 84 (90)
.+
T Consensus 227 ~~ 228 (317)
T 3o53_A 227 VL 228 (317)
T ss_dssp CE
T ss_pred cc
Confidence 64
No 100
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.86 E-value=3.9e-09 Score=68.65 Aligned_cols=78 Identities=22% Similarity=0.155 Sum_probs=52.0
Q ss_pred CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhc-CcccccEEEccCCcCCCcchhhhhcCCCccEEeccCC
Q 036214 2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLC-SLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYN 80 (90)
Q Consensus 2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~-~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n 80 (90)
+|.+.+..|..+.. +++|+.|++++|. +.+.. +. .+. .++.|+.+++++|.+++. +. ...+++|+.|++++|
T Consensus 129 ~N~l~~~~~~~~~~-l~~L~~L~Ls~N~--l~~~~-~~-~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N 201 (487)
T 3oja_A 129 NNKITMLRDLDEGC-RSRVQYLDLKLNE--IDTVN-FA-ELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSN 201 (487)
T ss_dssp SSCCCSGGGBCGGG-GSSEEEEECTTSC--CCEEE-GG-GGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSS
T ss_pred CCCCCCCCchhhcC-CCCCCEEECCCCC--CCCcC-hH-HHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCC
Confidence 45566666666666 7777777777777 66654 55 444 567777777777777733 32 334777888888888
Q ss_pred cCcccC
Q 036214 81 QLTGSI 86 (90)
Q Consensus 81 ~l~~~~ 86 (90)
.+++..
T Consensus 202 ~l~~~~ 207 (487)
T 3oja_A 202 KLAFMG 207 (487)
T ss_dssp CCCEEC
T ss_pred CCCCCC
Confidence 777643
No 101
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.84 E-value=1.4e-08 Score=62.82 Aligned_cols=69 Identities=23% Similarity=0.341 Sum_probs=48.3
Q ss_pred HHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcccCC
Q 036214 12 SIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGSIS 87 (90)
Q Consensus 12 ~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~~~p 87 (90)
.+.. +++|+.|++++|. +.+. . .+..+++|+.+++++|.+++..+..+..+++|+.+++++|.+++..|
T Consensus 260 ~~~~-l~~L~~L~l~~n~--l~~~---~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 260 AVKD-LTKLKMLNVGSNQ--ISDI---S-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp GGTT-CTTCCEEECCSSC--CCCC---G-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred hHhc-CCCcCEEEccCCc--cCCC---h-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence 4555 7777777777777 5543 2 45667777777777777776666777777777777777777766543
No 102
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.82 E-value=6.9e-09 Score=64.96 Aligned_cols=79 Identities=15% Similarity=0.056 Sum_probs=47.4
Q ss_pred CCcCCccchhHHHhhCCCCcEEeccCCccccccccch----hhhhcCcc-cccEEEccCCcCCCcchhhhhcC-----CC
Q 036214 2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMIL----DQGLCSLV-HLQELYIASNDLRGSLPWCLANM-----TS 71 (90)
Q Consensus 2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~----~~~~~~l~-~l~~l~l~~n~~~~~~p~~~~~l-----~~ 71 (90)
.|.+.+.+|..+.. ..+|++|++++|. +.+.. + . .+..++ +|+.+++++|.+++..+..+..+ ++
T Consensus 7 ~n~~~~~~~~~~~~-~~~L~~L~Ls~n~--l~~~~-~~~l~~-~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 7 LHPGSNPVEEFTSI-PHGVTSLDLSLNN--LYSIS-TVELIQ-AFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp CCTTCCHHHHHHTS-CTTCCEEECTTSC--GGGSC-HHHHHH-HHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccchHHHHHHHhC-CCCceEEEccCCC--CChHH-HHHHHH-HHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 45666666654443 4457777777777 55443 3 3 455555 67777777777765545555443 66
Q ss_pred ccEEeccCCcCccc
Q 036214 72 LRILDVSYNQLTGS 85 (90)
Q Consensus 72 L~~l~l~~n~l~~~ 85 (90)
|+.|++++|.+.+.
T Consensus 82 L~~L~Ls~n~l~~~ 95 (362)
T 3goz_A 82 VTSLNLSGNFLSYK 95 (362)
T ss_dssp CCEEECCSSCGGGS
T ss_pred ccEEECcCCcCChH
Confidence 77777777766543
No 103
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.82 E-value=2.2e-08 Score=62.00 Aligned_cols=64 Identities=19% Similarity=0.391 Sum_probs=34.0
Q ss_pred HHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCc
Q 036214 13 IGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLT 83 (90)
Q Consensus 13 ~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~ 83 (90)
+.. +++|+.|++++|. +.+.. +. .+..++.|+.+++++|.+++..| +..+++|+.+++++|.++
T Consensus 283 ~~~-l~~L~~L~L~~n~--l~~~~-~~-~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 283 LNN-LSQLNSLFLNNNQ--LGNED-ME-VIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGG-CTTCSEEECCSSC--CCGGG-HH-HHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred hcC-CCCCCEEECcCCc--CCCcC-hh-HhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 444 5566666666666 44443 44 45555666666666666653333 555556666666666543
No 104
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.82 E-value=2.2e-09 Score=65.89 Aligned_cols=80 Identities=15% Similarity=0.127 Sum_probs=39.9
Q ss_pred CcCCccchhHHHhhCCCCcEEeccCCccccccc--cchh-hhhcCcccccEEEccCCcCCCcchh----hhhcCCCccEE
Q 036214 3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSS--MILD-QGLCSLVHLQELYIASNDLRGSLPW----CLANMTSLRIL 75 (90)
Q Consensus 3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~--~~~~-~~~~~l~~l~~l~l~~n~~~~~~p~----~~~~l~~L~~l 75 (90)
|.+.+..+..+.. +++|++|++++|. +.+. . +. ..+..+++|+.+++++|+++ .++. .+..+++|++|
T Consensus 155 n~l~~~~~~~~~~-l~~L~~L~Ls~N~--l~~~~~~-~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L 229 (310)
T 4glp_A 155 AHSPAFSCEQVRA-FPALTSLDLSDNP--GLGERGL-MAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSL 229 (310)
T ss_dssp CSSCCCCTTSCCC-CTTCCEEECCSCT--TCHHHHH-HTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSE
T ss_pred CCcchhhHHHhcc-CCCCCEEECCCCC--Cccchhh-hHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEE
Confidence 4444444444444 5666666666665 3321 1 11 01234455555555555554 2232 23455666666
Q ss_pred eccCCcCcccCC
Q 036214 76 DVSYNQLTGSIS 87 (90)
Q Consensus 76 ~l~~n~l~~~~p 87 (90)
++++|.+.+..|
T Consensus 230 ~Ls~N~l~~~~p 241 (310)
T 4glp_A 230 DLSHNSLRATVN 241 (310)
T ss_dssp ECTTSCCCCCCC
T ss_pred ECCCCCCCccch
Confidence 666666666544
No 105
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.81 E-value=9.4e-09 Score=58.50 Aligned_cols=75 Identities=17% Similarity=0.207 Sum_probs=56.6
Q ss_pred CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214 2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ 81 (90)
Q Consensus 2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~ 81 (90)
+|.+. .++ .+....++|++|++++|. +++. . .+..+++|+++++++|.+++..+..+..+++|+.|++++|.
T Consensus 28 ~n~l~-~i~-~~~~~~~~L~~L~Ls~N~--l~~~---~-~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 99 (176)
T 1a9n_A 28 GYKIP-VIE-NLGATLDQFDAIDFSDNE--IRKL---D-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS 99 (176)
T ss_dssp TSCCC-SCC-CGGGGTTCCSEEECCSSC--CCEE---C-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCC
T ss_pred CCCCc-hhH-HhhhcCCCCCEEECCCCC--CCcc---c-ccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCc
Confidence 35555 344 345513489999999999 7653 3 67888999999999999994433555889999999999999
Q ss_pred Ccc
Q 036214 82 LTG 84 (90)
Q Consensus 82 l~~ 84 (90)
+..
T Consensus 100 i~~ 102 (176)
T 1a9n_A 100 LVE 102 (176)
T ss_dssp CCC
T ss_pred CCc
Confidence 854
No 106
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.72 E-value=7.7e-08 Score=59.17 Aligned_cols=39 Identities=23% Similarity=0.440 Sum_probs=15.8
Q ss_pred hcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214 42 LCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL 82 (90)
Q Consensus 42 ~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l 82 (90)
+..+++|+.+++++|++++ ++. +..+++|+.|++++|.+
T Consensus 103 ~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l 141 (308)
T 1h6u_A 103 IAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQI 141 (308)
T ss_dssp GTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCC
T ss_pred hcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCcc
Confidence 3334444444444444442 221 33444444444444443
No 107
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.72 E-value=1.1e-08 Score=60.66 Aligned_cols=62 Identities=24% Similarity=0.265 Sum_probs=31.2
Q ss_pred HHHhhCCCCcEEeccC-CccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCcc---EEeccCC
Q 036214 12 SIGESMSSLKYLSLSG-STIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLR---ILDVSYN 80 (90)
Q Consensus 12 ~~~~~l~~l~~L~l~~-n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~---~l~l~~n 80 (90)
.|.. +++|++|++++ |. ++... +. .+..+++|+.+++++|.++ .+|. +..+.+|+ .+++++|
T Consensus 75 ~f~~-l~~L~~L~l~~~n~--l~~i~-~~-~f~~l~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 75 SFYN-LSKVTHIEIRNTRN--LTYID-PD-ALKELPLLKFLGIFNTGLK-MFPD-LTKVYSTDIFFILEITDN 140 (239)
T ss_dssp TEES-CTTCCEEEEEEETT--CCEEC-TT-SEECCTTCCEEEEEEECCC-SCCC-CTTCCBCCSEEEEEEESC
T ss_pred HcCC-CcCCcEEECCCCCC--eeEcC-HH-HhCCCCCCCEEeCCCCCCc-cccc-cccccccccccEEECCCC
Confidence 3444 66666666665 55 44432 33 4555556666666655555 2333 33344443 4444444
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.71 E-value=1e-07 Score=58.20 Aligned_cols=40 Identities=33% Similarity=0.509 Sum_probs=16.9
Q ss_pred hcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCc
Q 036214 42 LCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLT 83 (90)
Q Consensus 42 ~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~ 83 (90)
+..+++|+.+++++|.+++..+ +..+++|+.|++++|.++
T Consensus 152 l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 152 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred hccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence 3334444444444444442221 444444444444444443
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.71 E-value=9.2e-08 Score=58.43 Aligned_cols=60 Identities=32% Similarity=0.520 Sum_probs=29.5
Q ss_pred CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214 17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG 84 (90)
Q Consensus 17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~ 84 (90)
+++|+.|++++|. +.+. . .+..+++|+.+++++|.+++ + ..+..+++|+.|++++|.+.+
T Consensus 111 l~~L~~L~L~~n~--i~~~---~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~N~l~~ 170 (291)
T 1h6t_A 111 LKKLKSLSLEHNG--ISDI---N-GLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISD 170 (291)
T ss_dssp CTTCCEEECTTSC--CCCC---G-GGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCC
T ss_pred CCCCCEEECCCCc--CCCC---h-hhcCCCCCCEEEccCCcCCc-c-hhhccCCCCCEEEccCCcccc
Confidence 4445555555544 3331 1 34444555555555555552 2 334555555555555555554
No 110
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.71 E-value=1.1e-09 Score=63.39 Aligned_cols=65 Identities=25% Similarity=0.328 Sum_probs=43.1
Q ss_pred HHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214 12 SIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG 84 (90)
Q Consensus 12 ~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~ 84 (90)
.+.. +++|++|++++|. +.+ + + .+..+++|+.+++++|.++ .+|..+..+++|+.|++++|.+.+
T Consensus 43 ~~~~-l~~L~~L~ls~n~--l~~-l-~--~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~ 107 (198)
T 1ds9_A 43 TLST-LKACKHLALSTNN--IEK-I-S--SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS 107 (198)
T ss_dssp HHHH-TTTCSEEECSEEE--ESC-C-C--CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC
T ss_pred HHhc-CCCCCEEECCCCC--Ccc-c-c--ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc
Confidence 6666 7777777777777 555 2 3 4556667777777777776 556655555666667666666654
No 111
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.70 E-value=1.2e-08 Score=62.80 Aligned_cols=62 Identities=29% Similarity=0.404 Sum_probs=40.8
Q ss_pred CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214 17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG 84 (90)
Q Consensus 17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~ 84 (90)
+++|++|++++|. +.+.. +. .+..+++|+.+++++|.+++..+ +..+++|+.|++++|.+.+
T Consensus 33 ~~~L~~L~L~~n~--l~~~~-~~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~ 94 (317)
T 3o53_A 33 AWNVKELDLSGNP--LSQIS-AA-DLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE 94 (317)
T ss_dssp GGGCSEEECTTSC--CCCCC-HH-HHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE
T ss_pred CCCCCEEECcCCc--cCcCC-HH-HhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc
Confidence 4567777777777 66544 44 56677777777777777764333 6666777777777776654
No 112
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.69 E-value=1.8e-08 Score=63.44 Aligned_cols=74 Identities=18% Similarity=0.320 Sum_probs=44.6
Q ss_pred ccchhHHHhhCCCCcEEeccCCccccccc----cchhhhh--cCcccccEEEccCCcCCC----cchhhh-hcCCCccEE
Q 036214 7 TSFLQSIGESMSSLKYLSLSGSTIGINSS----MILDQGL--CSLVHLQELYIASNDLRG----SLPWCL-ANMTSLRIL 75 (90)
Q Consensus 7 ~~~p~~~~~~l~~l~~L~l~~n~~~~~~~----~~~~~~~--~~l~~l~~l~l~~n~~~~----~~p~~~-~~l~~L~~l 75 (90)
+.+|..+.. +++|+.|++++|. +.+. + +. .+ ..+++|+.+++++|.+++ .+|..+ .++++|+.|
T Consensus 234 ~~l~~~l~~-~~~L~~L~L~~n~--i~~~~~~~l-~~-~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L 308 (386)
T 2ca6_A 234 SALAIALKS-WPNLRELGLNDCL--LSARGAAAV-VD-AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 308 (386)
T ss_dssp HHHHHHGGG-CTTCCEEECTTCC--CCHHHHHHH-HH-HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHcc-CCCcCEEECCCCC--CchhhHHHH-HH-HHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEE
Confidence 445555555 6677777777776 5443 1 22 33 226667777777777764 256555 456777777
Q ss_pred eccCCcCccc
Q 036214 76 DVSYNQLTGS 85 (90)
Q Consensus 76 ~l~~n~l~~~ 85 (90)
++++|.+++.
T Consensus 309 ~l~~N~l~~~ 318 (386)
T 2ca6_A 309 ELNGNRFSEE 318 (386)
T ss_dssp ECTTSBSCTT
T ss_pred EccCCcCCcc
Confidence 7777776654
No 113
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.69 E-value=2.2e-08 Score=61.71 Aligned_cols=70 Identities=21% Similarity=0.328 Sum_probs=35.3
Q ss_pred chhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCC-cCCC-cchhhhhcCCCccEEeccCC-cCc
Q 036214 9 FLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASN-DLRG-SLPWCLANMTSLRILDVSYN-QLT 83 (90)
Q Consensus 9 ~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n-~~~~-~~p~~~~~l~~L~~l~l~~n-~l~ 83 (90)
++..+.. +++|+.|++++|. +.+.. +. .+..+++|+.+++++| .+++ .++..+..+++|+.|++++| .++
T Consensus 110 ~~~~~~~-~~~L~~L~L~~~~--l~~~~-~~-~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~ 182 (336)
T 2ast_B 110 LHGILSQ-CSKLQNLSLEGLR--LSDPI-VN-TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT 182 (336)
T ss_dssp HHHHHTT-BCCCSEEECTTCB--CCHHH-HH-HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCC
T ss_pred HHHHHhh-CCCCCEEeCcCcc--cCHHH-HH-HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcC
Confidence 3333444 5555555555555 44433 43 4555555555555555 3443 24444555555555555555 444
No 114
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.68 E-value=2.8e-08 Score=60.59 Aligned_cols=65 Identities=22% Similarity=0.233 Sum_probs=52.0
Q ss_pred CCCCcEEeccCCccccccc--cchhhhhcCcccccEEEccCCcCCCcchhhhhcCC--CccEEeccCCcCcccCC
Q 036214 17 MSSLKYLSLSGSTIGINSS--MILDQGLCSLVHLQELYIASNDLRGSLPWCLANMT--SLRILDVSYNQLTGSIS 87 (90)
Q Consensus 17 l~~l~~L~l~~n~~~~~~~--~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~--~L~~l~l~~n~l~~~~p 87 (90)
++.|+.|++++|. +++. + +. .+..+++|+.|++++|.+++. ..+..+. +|+.|++++|.+++.+|
T Consensus 169 l~~L~~L~Ls~N~--l~~l~~l-~~-~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 169 IPELLSLNLSNNR--LYRLDDM-SS-IVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp CTTCCEEECTTSC--CCCCGGG-TT-HHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred CCCCCEEECCCCC--CCCCccc-hh-HHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 8899999999999 7763 2 34 566889999999999999843 2234444 89999999999998665
No 115
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.68 E-value=1.6e-07 Score=57.72 Aligned_cols=40 Identities=23% Similarity=0.326 Sum_probs=17.3
Q ss_pred cCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214 43 CSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG 84 (90)
Q Consensus 43 ~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~ 84 (90)
..+++|+.+++++|.+++ ++. +..+++|+.|++++|.+.+
T Consensus 170 ~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~L~~N~l~~ 209 (308)
T 1h6u_A 170 ANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISD 209 (308)
T ss_dssp TTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCB
T ss_pred cCCCCCCEEECCCCccCc-Chh-hcCCCCCCEEEccCCccCc
Confidence 344444444444444442 221 3444444444444444443
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.66 E-value=1.6e-07 Score=56.70 Aligned_cols=62 Identities=24% Similarity=0.449 Sum_probs=29.1
Q ss_pred HHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214 13 IGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG 84 (90)
Q Consensus 13 ~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~ 84 (90)
+.. +++|+.|++++|. +++. +. +.. ..|+.+++++|+++ .++ .+..+++|+.|++++|.+++
T Consensus 81 l~~-l~~L~~L~L~~N~--l~~l--~~--~~~-~~L~~L~L~~N~l~-~~~-~l~~l~~L~~L~Ls~N~i~~ 142 (263)
T 1xeu_A 81 LKD-LTKLEELSVNRNR--LKNL--NG--IPS-ACLSRLFLDNNELR-DTD-SLIHLKNLEILSIRNNKLKS 142 (263)
T ss_dssp GTT-CSSCCEEECCSSC--CSCC--TT--CCC-SSCCEEECCSSCCS-BSG-GGTTCTTCCEEECTTSCCCB
T ss_pred hcc-CCCCCEEECCCCc--cCCc--Cc--ccc-CcccEEEccCCccC-CCh-hhcCcccccEEECCCCcCCC
Confidence 444 6666666666666 4432 21 111 34444444444444 222 24445555555555555443
No 117
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.66 E-value=2.3e-08 Score=62.41 Aligned_cols=78 Identities=17% Similarity=0.200 Sum_probs=47.4
Q ss_pred CcCCccchh-HHHhhCCCCcEEeccCCccccccccchhhhhcCcccccE-EEccCCcCCCcchhhhhcCCCccEEeccCC
Q 036214 3 SALNTSFLQ-SIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQE-LYIASNDLRGSLPWCLANMTSLRILDVSYN 80 (90)
Q Consensus 3 n~~~~~~p~-~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~-l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n 80 (90)
|++. .+|+ .|.+ +++|++|++++|. +.+.+ +...|..++.+.. +.+..|+++...|..+..+++|+.+++++|
T Consensus 40 N~i~-~i~~~~f~~-l~~L~~L~Ls~N~--i~~~i-~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n 114 (350)
T 4ay9_X 40 TKLR-VIQKGAFSG-FGDLEKIEISQND--VLEVI-EADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT 114 (350)
T ss_dssp CCCS-EECTTSSTT-CTTCCEEEEECCT--TCCEE-CTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEE
T ss_pred CcCC-CcCHHHHcC-CCCCCEEECcCCC--CCCcc-ChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccccccc
Confidence 4444 3343 3455 7777777777777 54444 3324566666554 445566676444566777777888888777
Q ss_pred cCccc
Q 036214 81 QLTGS 85 (90)
Q Consensus 81 ~l~~~ 85 (90)
.+.+.
T Consensus 115 ~l~~~ 119 (350)
T 4ay9_X 115 GIKHL 119 (350)
T ss_dssp CCSSC
T ss_pred ccccC
Confidence 77653
No 118
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.64 E-value=1.9e-07 Score=62.36 Aligned_cols=60 Identities=28% Similarity=0.421 Sum_probs=29.6
Q ss_pred CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214 17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG 84 (90)
Q Consensus 17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~ 84 (90)
+++|+.|++++|. +.+. . .+..+++|+.|+++.|.+.+..| +..+++|+.|++++|.+.+
T Consensus 130 l~~L~~L~Ls~N~--l~~l---~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 130 LPQLESLYLGNNK--ITDI---T-VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp CTTCSEEECCSSC--CCCC---G-GGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred CCccCEEECCCCc--cCCc---h-hhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence 5555555555555 4332 1 34455555555555555553333 4455555555555555443
No 119
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.63 E-value=2.2e-07 Score=59.86 Aligned_cols=39 Identities=33% Similarity=0.479 Sum_probs=16.2
Q ss_pred CcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214 44 SLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG 84 (90)
Q Consensus 44 ~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~ 84 (90)
.++.|+.+++++|.+++. ..+..+++|+.+++++|++.+
T Consensus 329 ~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~ 367 (466)
T 1o6v_A 329 SLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISD 367 (466)
T ss_dssp GCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCB
T ss_pred cCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCc
Confidence 334444444444444321 123344444444444444443
No 120
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.63 E-value=6.2e-08 Score=60.64 Aligned_cols=69 Identities=22% Similarity=0.339 Sum_probs=35.6
Q ss_pred hHHHhhCC-CCcEEeccCCccccccccchhhhhcCc-----ccccEEEccCCcCCCcchhhhh----cC-CCccEEeccC
Q 036214 11 QSIGESMS-SLKYLSLSGSTIGINSSMILDQGLCSL-----VHLQELYIASNDLRGSLPWCLA----NM-TSLRILDVSY 79 (90)
Q Consensus 11 ~~~~~~l~-~l~~L~l~~n~~~~~~~~~~~~~~~~l-----~~l~~l~l~~n~~~~~~p~~~~----~l-~~L~~l~l~~ 79 (90)
+.+.. ++ +|++|++++|. +.+.. +. .+..+ +.|+.+++++|.+++..+..+. .+ ++|+.|++++
T Consensus 44 ~~l~~-~~~~L~~L~Ls~N~--l~~~~-~~-~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 118 (362)
T 3goz_A 44 QAFAN-TPASVTSLNLSGNS--LGFKN-SD-ELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGW 118 (362)
T ss_dssp HHHHT-CCTTCCEEECCSSC--GGGSC-HH-HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCS
T ss_pred HHHHh-CCCceeEEECcCCC--CCHHH-HH-HHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcC
Confidence 33444 55 56666666666 44433 33 33332 5566666666666544443222 22 5566666666
Q ss_pred CcCcc
Q 036214 80 NQLTG 84 (90)
Q Consensus 80 n~l~~ 84 (90)
|.+.+
T Consensus 119 N~l~~ 123 (362)
T 3goz_A 119 NDFSS 123 (362)
T ss_dssp SCGGG
T ss_pred CcCCc
Confidence 65544
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.61 E-value=8.4e-08 Score=57.90 Aligned_cols=63 Identities=17% Similarity=0.246 Sum_probs=33.8
Q ss_pred HHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214 13 IGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG 84 (90)
Q Consensus 13 ~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~ 84 (90)
+.. +++|+.|++++|. +++. . .+..+++|+.+++++|.+++. ..+..+++|+.+++++|.+.+
T Consensus 124 l~~-l~~L~~L~Ls~N~--i~~~---~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 124 LIH-LKNLEILSIRNNK--LKSI---V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp GTT-CTTCCEEECTTSC--CCBC---G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred hcC-cccccEEECCCCc--CCCC---h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 444 5556666666665 4432 1 344555566666666665533 345555556666666555543
No 122
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.61 E-value=1.5e-07 Score=62.97 Aligned_cols=42 Identities=29% Similarity=0.494 Sum_probs=21.8
Q ss_pred hcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCccc
Q 036214 42 LCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGS 85 (90)
Q Consensus 42 ~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~~ 85 (90)
+..+++|+.|+++.|.+++ + ..+..+++|+.|++++|.+.+.
T Consensus 127 l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 127 LVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp GGGCTTCSEEECCSSCCCC-C-GGGGSCTTCSEEECCSSCCCCC
T ss_pred ccCCCccCEEECCCCccCC-c-hhhcccCCCCEEECcCCcCCCc
Confidence 4444555555555555552 2 3455555566666666555543
No 123
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.61 E-value=3.5e-08 Score=60.75 Aligned_cols=76 Identities=21% Similarity=0.166 Sum_probs=57.6
Q ss_pred CcCCccchhHHHhhCCCCcEEeccCCccccccc-cchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCC-
Q 036214 3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSS-MILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYN- 80 (90)
Q Consensus 3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~-~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n- 80 (90)
|.+.+..+. +.. +++|+.|++++|. +.+. . +. .+..+++|+.+++++|.+++..+..+..+++|+.|++++|
T Consensus 80 n~l~~~~~~-~~~-~~~L~~L~L~~~~--l~~~~~-~~-~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~ 153 (336)
T 2ast_B 80 SFMDQPLAE-HFS-PFRVQHMDLSNSV--IEVSTL-HG-ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS 153 (336)
T ss_dssp CEECSCCCS-CCC-CBCCCEEECTTCE--ECHHHH-HH-HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCB
T ss_pred ccccccchh-hcc-CCCCCEEEccCCC--cCHHHH-HH-HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCC
Confidence 344444333 445 7889999999988 6654 3 55 6778889999999999888778888888999999999988
Q ss_pred cCcc
Q 036214 81 QLTG 84 (90)
Q Consensus 81 ~l~~ 84 (90)
.+++
T Consensus 154 ~l~~ 157 (336)
T 2ast_B 154 GFSE 157 (336)
T ss_dssp SCCH
T ss_pred CCCH
Confidence 5654
No 124
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.60 E-value=2.1e-09 Score=62.30 Aligned_cols=71 Identities=25% Similarity=0.221 Sum_probs=41.6
Q ss_pred chhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcch--hhhhcCCCccEEeccCCcCcccC
Q 036214 9 FLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLP--WCLANMTSLRILDVSYNQLTGSI 86 (90)
Q Consensus 9 ~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p--~~~~~l~~L~~l~l~~n~l~~~~ 86 (90)
+|..+.. +++|++|++++|. +++. + .+..+++|+.+++++|.++ .++ ..+..+++|+.+++++|.+.+..
T Consensus 85 l~~~~~~-~~~L~~L~L~~N~--l~~l--~--~~~~l~~L~~L~l~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 156 (198)
T 1ds9_A 85 IENLDAV-ADTLEELWISYNQ--IASL--S--GIEKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYNDY 156 (198)
T ss_dssp CSSHHHH-HHHCSEEEEEEEE--CCCH--H--HHHHHHHSSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSCHHHHHH
T ss_pred ccchhhc-CCcCCEEECcCCc--CCcC--C--ccccCCCCCEEECCCCcCC-chhHHHHHhcCCCCCEEEecCCcccccc
Confidence 4444443 4556666666666 4431 2 3455566667777777666 333 35667777777777777776554
Q ss_pred C
Q 036214 87 S 87 (90)
Q Consensus 87 p 87 (90)
|
T Consensus 157 ~ 157 (198)
T 1ds9_A 157 K 157 (198)
T ss_dssp H
T ss_pred c
Confidence 3
No 125
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.60 E-value=1.8e-07 Score=60.19 Aligned_cols=72 Identities=18% Similarity=0.274 Sum_probs=58.4
Q ss_pred CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214 2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ 81 (90)
Q Consensus 2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~ 81 (90)
+|.+.+..| +.. +++|+.|++++|. +.+. . .+..+++|+.+++++|.+++..| +..+++|+.+++++|.
T Consensus 318 ~n~l~~~~~--~~~-l~~L~~L~l~~n~--l~~~---~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 318 FNNISDISP--VSS-LTKLQRLFFYNNK--VSDV---S-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA 386 (466)
T ss_dssp SSCCSCCGG--GGG-CTTCCEEECCSSC--CCCC---G-GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEE
T ss_pred CCcCCCchh--hcc-CccCCEeECCCCc--cCCc---h-hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCc
Confidence 455555544 555 8888888888888 6653 3 67889999999999999997766 8899999999999999
Q ss_pred Ccc
Q 036214 82 LTG 84 (90)
Q Consensus 82 l~~ 84 (90)
+++
T Consensus 387 ~~~ 389 (466)
T 1o6v_A 387 WTN 389 (466)
T ss_dssp EEC
T ss_pred ccC
Confidence 887
No 126
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.55 E-value=8.6e-08 Score=61.21 Aligned_cols=72 Identities=29% Similarity=0.342 Sum_probs=54.6
Q ss_pred chhHHHhhCCCCcEEeccCCccccccccchhhhhcC-----cccccEEEccCCcCCC----cchhhhhcCCCccEEeccC
Q 036214 9 FLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCS-----LVHLQELYIASNDLRG----SLPWCLANMTSLRILDVSY 79 (90)
Q Consensus 9 ~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~-----l~~l~~l~l~~n~~~~----~~p~~~~~l~~L~~l~l~~ 79 (90)
++..+.. +++|++|++++|. +.+.. +. .+.. .+.|+.+++++|.+++ .++..+..+++|+.+++++
T Consensus 333 l~~~l~~-~~~L~~L~Ls~n~--i~~~~-~~-~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~ 407 (461)
T 1z7x_W 333 FSSVLAQ-NRFLLELQISNNR--LEDAG-VR-ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSN 407 (461)
T ss_dssp HHHHHHH-CSSCCEEECCSSB--CHHHH-HH-HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCS
T ss_pred HHHHHhh-CCCccEEEccCCc--ccccc-HH-HHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCC
Confidence 4555666 7899999999998 66543 33 3322 5689999999999886 6778888889999999999
Q ss_pred CcCccc
Q 036214 80 NQLTGS 85 (90)
Q Consensus 80 n~l~~~ 85 (90)
|.+.+.
T Consensus 408 N~i~~~ 413 (461)
T 1z7x_W 408 NCLGDA 413 (461)
T ss_dssp SSCCHH
T ss_pred CCCCHH
Confidence 988753
No 127
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.54 E-value=2e-07 Score=58.66 Aligned_cols=64 Identities=22% Similarity=0.290 Sum_probs=32.8
Q ss_pred CCCCcEEeccCCccccc--c---ccchhhhhcCcccccEEEccCCcCC----CcchhhhhcCCCccEEeccCCcCcc
Q 036214 17 MSSLKYLSLSGSTIGIN--S---SMILDQGLCSLVHLQELYIASNDLR----GSLPWCLANMTSLRILDVSYNQLTG 84 (90)
Q Consensus 17 l~~l~~L~l~~n~~~~~--~---~~~~~~~~~~l~~l~~l~l~~n~~~----~~~p~~~~~l~~L~~l~l~~n~l~~ 84 (90)
+++|+.|++++|. +. + .. +. .+..+++|+.+++++|.++ ..+|..+..+++|+.|++++|.+.+
T Consensus 186 ~~~L~~L~L~~n~--l~~~g~~~l~-~~-~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~ 258 (386)
T 2ca6_A 186 HRLLHTVKMVQNG--IRPEGIEHLL-LE-GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA 258 (386)
T ss_dssp CTTCCEEECCSSC--CCHHHHHHHH-HT-TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred CCCcCEEECcCCC--CCHhHHHHHH-HH-HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCch
Confidence 5556666666655 33 1 11 21 3344555556666655553 2445555555555555555555543
No 128
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.47 E-value=3.1e-07 Score=61.62 Aligned_cols=62 Identities=27% Similarity=0.246 Sum_probs=50.0
Q ss_pred CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcccCC
Q 036214 17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGSIS 87 (90)
Q Consensus 17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~~~p 87 (90)
+++|+.|++++|. ++.. |. .+++|+.+++++|.++ .+|..+..+++|+.+++++|.+.+..|
T Consensus 240 l~~L~~L~Ls~N~--L~~l--p~----~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 240 PSELKELMVSGNR--LTSL--PM----LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp CTTCCEEECCSSC--CSCC--CC----CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred CCcCcEEECCCCC--CCcC--Cc----ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCH
Confidence 5678888888887 6542 32 4577899999999999 788889999999999999999987654
No 129
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.47 E-value=6.4e-07 Score=57.91 Aligned_cols=62 Identities=27% Similarity=0.341 Sum_probs=33.7
Q ss_pred HHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214 12 SIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG 84 (90)
Q Consensus 12 ~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~ 84 (90)
.+.. +++|++|++++|. +++. .+..+++|+.+++++|.+++ ++ +..+++|++|++++|.+.+
T Consensus 59 ~l~~-l~~L~~L~Ls~n~--l~~~-----~~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~ 120 (457)
T 3bz5_A 59 GIEK-LTGLTKLICTSNN--ITTL-----DLSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTK 120 (457)
T ss_dssp TGGG-CTTCSEEECCSSC--CSCC-----CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSC
T ss_pred hhcc-cCCCCEEEccCCc--CCeE-----ccccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCe
Confidence 3445 6666666666666 5442 23445555666666665553 22 4555555555555555544
No 130
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.46 E-value=4.4e-07 Score=58.63 Aligned_cols=70 Identities=21% Similarity=0.280 Sum_probs=50.9
Q ss_pred CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214 2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ 81 (90)
Q Consensus 2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~ 81 (90)
+|.+.+ +| .+.. +++|++|++++|. +++ + |. . ..+|+.+++++|.+++ +| .+..+++|+.+++++|.
T Consensus 140 ~n~l~~-lp-~~~~-l~~L~~L~l~~N~--l~~-l-p~-~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~ 206 (454)
T 1jl5_A 140 NNQLEK-LP-ELQN-SSFLKIIDVDNNS--LKK-L-PD-L---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNS 206 (454)
T ss_dssp SSCCSS-CC-CCTT-CTTCCEEECCSSC--CSC-C-CC-C---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSC
T ss_pred CCCCCC-Cc-ccCC-CCCCCEEECCCCc--Ccc-c-CC-C---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCc
Confidence 355554 56 4666 8888888888888 665 3 44 2 2478888888888884 56 47788888888888888
Q ss_pred Ccc
Q 036214 82 LTG 84 (90)
Q Consensus 82 l~~ 84 (90)
+.+
T Consensus 207 l~~ 209 (454)
T 1jl5_A 207 LKK 209 (454)
T ss_dssp CSS
T ss_pred CCc
Confidence 876
No 131
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.46 E-value=1.5e-07 Score=60.84 Aligned_cols=64 Identities=23% Similarity=0.288 Sum_probs=24.5
Q ss_pred CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCC--cchhhhhcC-------------CCccEEeccCCc
Q 036214 17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRG--SLPWCLANM-------------TSLRILDVSYNQ 81 (90)
Q Consensus 17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~--~~p~~~~~l-------------~~L~~l~l~~n~ 81 (90)
+++|+.|++++|. ++. + |. .+.+|+.+++++|.+++ .+|..+..+ ++|+.+++++|+
T Consensus 336 ~~~L~~L~L~~N~--l~~-l-p~----~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 336 PPRLERLIASFNH--LAE-V-PE----LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp CTTCCEEECCSSC--CSC-C-CC----CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------
T ss_pred CCcCCEEECCCCc--ccc-c-cc----hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence 3455566666665 443 2 22 34556666666666665 455555555 556666666666
Q ss_pred Ccc--cCCC
Q 036214 82 LTG--SISL 88 (90)
Q Consensus 82 l~~--~~p~ 88 (90)
+++ .+|.
T Consensus 408 l~~~~~iP~ 416 (454)
T 1jl5_A 408 LREFPDIPE 416 (454)
T ss_dssp ---------
T ss_pred CCccccchh
Confidence 665 4543
No 132
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.42 E-value=2.5e-07 Score=61.51 Aligned_cols=61 Identities=16% Similarity=0.165 Sum_probs=42.2
Q ss_pred CCCcEEeccCCccccccccchhhhhcCcccc-------cEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcccCC
Q 036214 18 SSLKYLSLSGSTIGINSSMILDQGLCSLVHL-------QELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGSIS 87 (90)
Q Consensus 18 ~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l-------~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~~~p 87 (90)
++|+.|++++|. ++. + |. +.. +| +.+++++|.++ .+|..+..+++|+.|++++|.+++.+|
T Consensus 180 ~~L~~L~Ls~N~--L~~-l-p~--~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 180 ESLEALDVSTNL--LES-L-PA--VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp TTCCEEECCSSC--CSS-C-CC--CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred CCCCEEECcCCC--CCc-h-hh--HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 466677777776 543 2 32 221 55 88888888888 678777778889999999998887655
No 133
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.38 E-value=8e-07 Score=57.47 Aligned_cols=68 Identities=28% Similarity=0.313 Sum_probs=57.1
Q ss_pred cchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCccc
Q 036214 8 SFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGS 85 (90)
Q Consensus 8 ~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~~ 85 (90)
..+..+.. +++|++|++++|. +.+. | .+..+++|+.+++++|.+++ +| +..+++|++|++++|.+.+.
T Consensus 33 ~~~~~~~~-l~~L~~L~Ls~n~--l~~~--~--~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~ 100 (457)
T 3bz5_A 33 TDTISEEQ-LATLTSLDCHNSS--ITDM--T--GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL 100 (457)
T ss_dssp TSEEEHHH-HTTCCEEECCSSC--CCCC--T--TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC
T ss_pred ccccChhH-cCCCCEEEccCCC--cccC--h--hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee
Confidence 33445667 8999999999999 7763 3 57889999999999999995 44 88899999999999998873
No 134
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.31 E-value=6.9e-07 Score=57.03 Aligned_cols=71 Identities=27% Similarity=0.345 Sum_probs=35.5
Q ss_pred chhHHHhhCCCCcEEeccCCccccccccchhhhhcC-----cccccEEEccCCcCCCc----chhhhhcCCCccEEeccC
Q 036214 9 FLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCS-----LVHLQELYIASNDLRGS----LPWCLANMTSLRILDVSY 79 (90)
Q Consensus 9 ~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~-----l~~l~~l~l~~n~~~~~----~p~~~~~l~~L~~l~l~~ 79 (90)
++..+.. +++|+.|++++|. +.... +. .+.. .+.|+.+++++|.+++. ++..+..+++|+.+++++
T Consensus 276 l~~~l~~-~~~L~~L~Ls~n~--i~~~~-~~-~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 350 (461)
T 1z7x_W 276 LCRVLRA-KESLKELSLAGNE--LGDEG-AR-LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISN 350 (461)
T ss_dssp HHHHHHH-CTTCCEEECTTCC--CHHHH-HH-HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCS
T ss_pred HHHHHhh-CCCcceEECCCCC--CchHH-HH-HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccC
Confidence 4444555 6666666666666 43321 21 1111 13555555555555532 334444555566666665
Q ss_pred CcCcc
Q 036214 80 NQLTG 84 (90)
Q Consensus 80 n~l~~ 84 (90)
|.+.+
T Consensus 351 n~i~~ 355 (461)
T 1z7x_W 351 NRLED 355 (461)
T ss_dssp SBCHH
T ss_pred Ccccc
Confidence 55543
No 135
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.27 E-value=1.1e-06 Score=54.71 Aligned_cols=73 Identities=12% Similarity=0.064 Sum_probs=55.4
Q ss_pred cchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcch-hhhhcCCCccE-EeccCCcCccc
Q 036214 8 SFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLP-WCLANMTSLRI-LDVSYNQLTGS 85 (90)
Q Consensus 8 ~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p-~~~~~l~~L~~-l~l~~n~l~~~ 85 (90)
.+|..+. +++++|++++|. ++... +. .|..+++|+.+++++|.+.+.+| ..|.+++++.. +.+..|++.+.
T Consensus 23 ~iP~~l~---~~l~~L~Ls~N~--i~~i~-~~-~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l 95 (350)
T 4ay9_X 23 EIPSDLP---RNAIELRFVLTK--LRVIQ-KG-AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI 95 (350)
T ss_dssp SCCTTCC---TTCSEEEEESCC--CSEEC-TT-SSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEE
T ss_pred ccCcCcC---CCCCEEEccCCc--CCCcC-HH-HHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccccc
Confidence 5676543 479999999999 77643 34 68999999999999999875666 45788888765 56667888775
Q ss_pred CC
Q 036214 86 IS 87 (90)
Q Consensus 86 ~p 87 (90)
.|
T Consensus 96 ~~ 97 (350)
T 4ay9_X 96 NP 97 (350)
T ss_dssp CT
T ss_pred Cc
Confidence 44
No 136
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.26 E-value=2.6e-06 Score=56.73 Aligned_cols=55 Identities=31% Similarity=0.382 Sum_probs=24.4
Q ss_pred CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCc
Q 036214 17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLT 83 (90)
Q Consensus 17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~ 83 (90)
+++|+.|++++|. +++ + |. .+++|+.+++++|.+++ +|. +. ++|+.|++++|.++
T Consensus 139 l~~L~~L~Ls~N~--l~~-l-p~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 139 PALLEYINADNNQ--LTM-L-PE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp CTTCCEEECCSSC--CSC-C-CC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS
T ss_pred CccccEEeCCCCc--cCc-C-CC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC
Confidence 4445555555555 333 1 21 23344555555555442 333 22 44455555555444
No 137
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.19 E-value=7.7e-06 Score=49.86 Aligned_cols=71 Identities=27% Similarity=0.347 Sum_probs=52.5
Q ss_pred CCcCCc--cchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcch-------hhhhcCCCc
Q 036214 2 RSALNT--SFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLP-------WCLANMTSL 72 (90)
Q Consensus 2 ~n~~~~--~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p-------~~~~~l~~L 72 (90)
+|.+.+ .+|..+.. +++|+.|+|++|. +.+..... .+..+ .|+.|++++|.+.+.+| ..+..+++|
T Consensus 179 ~N~l~~l~~l~~~~~~-l~~L~~L~Ls~N~--i~~~~~l~-~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L 253 (267)
T 3rw6_A 179 NNRLYRLDDMSSIVQK-APNLKILNLSGNE--LKSERELD-KIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKL 253 (267)
T ss_dssp TSCCCCCGGGTTHHHH-STTCCEEECTTSC--CCSGGGGG-GGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTC
T ss_pred CCCCCCCccchhHHhh-CCCCCEEECCCCc--cCCchhhh-hcccC-CcceEEccCCcCccccCcchhHHHHHHHHCccc
Confidence 577777 55666677 9999999999999 77642122 34444 89999999999986554 246778889
Q ss_pred cEEec
Q 036214 73 RILDV 77 (90)
Q Consensus 73 ~~l~l 77 (90)
+.|+-
T Consensus 254 ~~LDg 258 (267)
T 3rw6_A 254 LRLDG 258 (267)
T ss_dssp CEESS
T ss_pred CeECC
Confidence 88753
No 138
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.15 E-value=2.7e-06 Score=55.86 Aligned_cols=75 Identities=17% Similarity=0.092 Sum_probs=47.3
Q ss_pred cchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCc-chhhhhcCCCccEEeccCCcCccc
Q 036214 8 SFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGS-LPWCLANMTSLRILDVSYNQLTGS 85 (90)
Q Consensus 8 ~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~-~p~~~~~l~~L~~l~l~~n~l~~~ 85 (90)
..+..+...+++|++|++++|. +++.. ....+..+++|+.+++++|.+++. .+.....+++|+.|++++|+++..
T Consensus 453 ~~~~~~~~~~~~L~~L~L~~n~--l~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 453 LGLSYIGQYSPNVRWMLLGYVG--ESDEG-LMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHHHHSCTTCCEEEECSCC--SSHHH-HHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHHHHHhCccceEeeccCCC--CCHHH-HHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 3334444336677777777777 55422 221346677788888888887643 344455678888888888877653
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.97 E-value=1.1e-05 Score=51.10 Aligned_cols=64 Identities=28% Similarity=0.307 Sum_probs=32.1
Q ss_pred CCCCcEEeccCCccccccccch---hhhhcCcccccEEEccCCcCCCc----chhhhhcCCCccEEeccCCcCc
Q 036214 17 MSSLKYLSLSGSTIGINSSMIL---DQGLCSLVHLQELYIASNDLRGS----LPWCLANMTSLRILDVSYNQLT 83 (90)
Q Consensus 17 l~~l~~L~l~~n~~~~~~~~~~---~~~~~~l~~l~~l~l~~n~~~~~----~p~~~~~l~~L~~l~l~~n~l~ 83 (90)
.++|++|++++|. +.... . ...+...+.|+.+++++|.+++. +...+...++|+.|++++|.+.
T Consensus 182 ~~~L~~L~Ls~N~--l~~~g-~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 182 NTSVTHLSLLHTG--LGDEG-LELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp CSSCCEEECTTSS--CHHHH-HHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred CCCcCEEeCCCCC--CCcHH-HHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 5556666666666 33211 1 00233445566666666666532 2223334456666666666654
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.93 E-value=7e-06 Score=51.94 Aligned_cols=65 Identities=22% Similarity=0.293 Sum_probs=36.1
Q ss_pred CCCCcEEeccCCccccccccchh---hhhcCcccccEEEccCCcCCCc----chhhhhcCCCccEEeccCCcCcc
Q 036214 17 MSSLKYLSLSGSTIGINSSMILD---QGLCSLVHLQELYIASNDLRGS----LPWCLANMTSLRILDVSYNQLTG 84 (90)
Q Consensus 17 l~~l~~L~l~~n~~~~~~~~~~~---~~~~~l~~l~~l~l~~n~~~~~----~p~~~~~l~~L~~l~l~~n~l~~ 84 (90)
.+.|+.|++++|. ++... .. ..+...+.|+.+++++|.+++. ++..+...++|+.|++++|.++.
T Consensus 154 ~~~L~~L~Ls~n~--l~~~~-~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 154 QCQITTLRLSNNP--LTAAG-VAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp TCCCCEEECCSSC--CHHHH-HHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred CCccceeeCCCCC--CChHH-HHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 3556667776666 43211 11 0234456677777777766532 23445555667777777776653
No 141
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.83 E-value=4.7e-05 Score=51.22 Aligned_cols=57 Identities=39% Similarity=0.428 Sum_probs=35.6
Q ss_pred CCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcccCC
Q 036214 18 SSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGSIS 87 (90)
Q Consensus 18 ~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~~~p 87 (90)
++|+.|++++|. +++ + |. .+++|+.+++++|.++ .+|. .+++|+.|++++|.++ .+|
T Consensus 221 ~~L~~L~Ls~N~--L~~-l-p~----~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp 277 (622)
T 3g06_A 221 SGLKELIVSGNR--LTS-L-PV----LPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLP 277 (622)
T ss_dssp TTCCEEECCSSC--CSC-C-CC----CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCC
T ss_pred CCCCEEEccCCc--cCc-C-CC----CCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCC
Confidence 456666666666 544 2 32 3356777777777776 4554 4566777777777776 444
No 142
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.78 E-value=2e-05 Score=51.67 Aligned_cols=38 Identities=16% Similarity=0.103 Sum_probs=17.2
Q ss_pred cccccEEEccCCcCCCcchh-hhhcCCCccEEeccCCcC
Q 036214 45 LVHLQELYIASNDLRGSLPW-CLANMTSLRILDVSYNQL 82 (90)
Q Consensus 45 l~~l~~l~l~~n~~~~~~p~-~~~~l~~L~~l~l~~n~l 82 (90)
+++|+.+++++|.+++.... ....+++|+.|++++|.+
T Consensus 480 ~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 480 CDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred CCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 44555555555555322221 222344555555555544
No 143
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.71 E-value=5.2e-05 Score=49.79 Aligned_cols=65 Identities=15% Similarity=0.079 Sum_probs=37.9
Q ss_pred CCCCcEEeccCCcccccccc---chhhhhcCcccccEEEccCCcCC----CcchhhhhcCCCccEEeccCCcCcc
Q 036214 17 MSSLKYLSLSGSTIGINSSM---ILDQGLCSLVHLQELYIASNDLR----GSLPWCLANMTSLRILDVSYNQLTG 84 (90)
Q Consensus 17 l~~l~~L~l~~n~~~~~~~~---~~~~~~~~l~~l~~l~l~~n~~~----~~~p~~~~~l~~L~~l~l~~n~l~~ 84 (90)
+++|++|++++|. +.+.. .+. ....++.|+.++++.|.++ ..++..+..+++|+.|++++|.+.+
T Consensus 163 ~~~L~~L~L~~~~--~~~~~~~~l~~-~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~ 234 (592)
T 3ogk_B 163 CRKIKTLLMEESS--FSEKDGKWLHE-LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE 234 (592)
T ss_dssp CTTCSEEECTTCE--EECCCSHHHHH-HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG
T ss_pred CCCCCEEECcccc--ccCcchhHHHH-HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH
Confidence 6777777777776 54331 011 2344566777777776665 2344445566777777777666543
No 144
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.68 E-value=5.3e-05 Score=43.43 Aligned_cols=14 Identities=29% Similarity=0.311 Sum_probs=6.5
Q ss_pred ccccEEEccCCcCC
Q 036214 46 VHLQELYIASNDLR 59 (90)
Q Consensus 46 ~~l~~l~l~~n~~~ 59 (90)
+.|+.|++++|.++
T Consensus 93 ~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 93 NTLKSLNVESNFIS 106 (185)
T ss_dssp SSCCEEECCSSCCC
T ss_pred CCcCEEECcCCcCC
Confidence 34444444444444
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.57 E-value=7.1e-05 Score=49.10 Aligned_cols=66 Identities=18% Similarity=0.205 Sum_probs=45.6
Q ss_pred HHhhCCCCcEEeccCCccccccccchhhhhcC-cccccEEEccCCcCCCcchhhh-hcCCCccEEeccCCcCcc
Q 036214 13 IGESMSSLKYLSLSGSTIGINSSMILDQGLCS-LVHLQELYIASNDLRGSLPWCL-ANMTSLRILDVSYNQLTG 84 (90)
Q Consensus 13 ~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~-l~~l~~l~l~~n~~~~~~p~~~-~~l~~L~~l~l~~n~l~~ 84 (90)
+.. +++|+.|++++ . ++... +. .+.. +++|+.++++.|.+++.....+ ..+++|+.|++++|.+++
T Consensus 428 ~~~-~~~L~~L~L~~-~--l~~~~-~~-~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~ 495 (594)
T 2p1m_B 428 VEH-CKDLRRLSLSG-L--LTDKV-FE-YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD 495 (594)
T ss_dssp HHH-CTTCCEEECCS-S--CCHHH-HH-HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCH
T ss_pred Hhh-CCCccEEeecC-c--ccHHH-HH-HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcH
Confidence 444 77788888866 4 44433 33 3333 6778999999998875544444 668899999999998754
No 146
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.55 E-value=0.00016 Score=41.46 Aligned_cols=70 Identities=24% Similarity=0.218 Sum_probs=50.7
Q ss_pred hhHHHhhCCCCcEEeccCCccccccccchh---hhhcCcccccEEEc--cCCcCCCc----chhhhhcCCCccEEeccCC
Q 036214 10 LQSIGESMSSLKYLSLSGSTIGINSSMILD---QGLCSLVHLQELYI--ASNDLRGS----LPWCLANMTSLRILDVSYN 80 (90)
Q Consensus 10 p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~---~~~~~l~~l~~l~l--~~n~~~~~----~p~~~~~l~~L~~l~l~~n 80 (90)
.+.+.. .++|++|++++|. +.... .. ..+.....|+.+++ ++|.++.. +...+...+.|+.|++++|
T Consensus 86 ~~~L~~-n~~L~~L~L~~N~--i~~~g-~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 86 AEMLKV-NNTLKSLNVESNF--ISGSG-ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHHH-CSSCCEEECCSSC--CCHHH-HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHh-CCCcCEEECcCCc--CCHHH-HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 344444 6789999999999 55421 11 14556678999999 88999853 3455666789999999999
Q ss_pred cCc
Q 036214 81 QLT 83 (90)
Q Consensus 81 ~l~ 83 (90)
.+.
T Consensus 162 ~i~ 164 (185)
T 1io0_A 162 QQG 164 (185)
T ss_dssp SHH
T ss_pred CCC
Confidence 875
No 147
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.54 E-value=0.00016 Score=41.58 Aligned_cols=65 Identities=18% Similarity=0.191 Sum_probs=36.2
Q ss_pred HHhhCCCCcEEeccCCccccccccchhhhhcCc----ccccEEEccCCc-CCCcchhhhhcCCCccEEeccCCc
Q 036214 13 IGESMSSLKYLSLSGSTIGINSSMILDQGLCSL----VHLQELYIASND-LRGSLPWCLANMTSLRILDVSYNQ 81 (90)
Q Consensus 13 ~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l----~~l~~l~l~~n~-~~~~~p~~~~~l~~L~~l~l~~n~ 81 (90)
+.. +++|+.|++++|.- ++... .. .+..+ ++|+.|+++++. +++.--..+..+++|+.|+++++.
T Consensus 81 L~~-~~~L~~L~L~~C~~-ItD~g-L~-~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 81 MEG-LQYVEKIRLCKCHY-IEDGC-LE-RLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp GTT-CSCCCEEEEESCTT-CCHHH-HH-HHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCT
T ss_pred hcC-CCCCCEEEeCCCCc-cCHHH-HH-HHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCC
Confidence 444 66777777777640 22211 22 33332 257777777763 664333445667777777777764
No 148
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.51 E-value=0.00021 Score=44.10 Aligned_cols=62 Identities=11% Similarity=0.032 Sum_probs=38.6
Q ss_pred CCCCcEEeccCCccccccccchhhhhcCccccc-EEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214 17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQ-ELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG 84 (90)
Q Consensus 17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~-~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~ 84 (90)
+.+|+.+++..|- .... .. .|..+..|+ .+++.. .++..-+..|..+.+|+.+++.+|.+..
T Consensus 249 ~~~L~~l~l~~ni---~~I~-~~-aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~ 311 (329)
T 3sb4_A 249 KKYLLKIKLPHNL---KTIG-QR-VFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITT 311 (329)
T ss_dssp CTTCCEEECCTTC---CEEC-TT-TTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCE
T ss_pred CCCCCEEECCccc---ceeh-HH-HhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCc
Confidence 6677777776653 2221 33 566777777 777766 5553444667777777777777666654
No 149
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.48 E-value=0.00052 Score=37.37 Aligned_cols=34 Identities=26% Similarity=0.347 Sum_probs=15.1
Q ss_pred ccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214 48 LQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ 81 (90)
Q Consensus 48 l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~ 81 (90)
++.|+|++|+++..-+..|..+++|+.+++.+|.
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4444444444442222334444444444444444
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.37 E-value=0.0001 Score=46.58 Aligned_cols=64 Identities=19% Similarity=0.330 Sum_probs=34.8
Q ss_pred CCCCcEEeccCCccccccccchhh--hhcCcccccEEEccCCcCCCc----chhhhhcCCCccEEeccCCcCc
Q 036214 17 MSSLKYLSLSGSTIGINSSMILDQ--GLCSLVHLQELYIASNDLRGS----LPWCLANMTSLRILDVSYNQLT 83 (90)
Q Consensus 17 l~~l~~L~l~~n~~~~~~~~~~~~--~~~~l~~l~~l~l~~n~~~~~----~p~~~~~l~~L~~l~l~~n~l~ 83 (90)
+++|+.|++.+|. +.... +.. ....+++|+.|+++.|.+++. ++..+..+++|+.|+++.|.++
T Consensus 251 ~p~Lr~L~L~~~~--i~~~~-~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 251 FPNLKWLGIVDAE--EQNVV-VEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CTTCCEEEEESCT--THHHH-HHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCcCEEeCCCCC--CchHH-HHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 4566666666666 43221 110 112456677777777766642 2222344566777777766654
No 151
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.15 E-value=0.0008 Score=41.47 Aligned_cols=63 Identities=10% Similarity=0.085 Sum_probs=49.3
Q ss_pred chhH-HHhhCCCCc-EEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEec
Q 036214 9 FLQS-IGESMSSLK-YLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDV 77 (90)
Q Consensus 9 ~p~~-~~~~l~~l~-~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l 77 (90)
+++. |.+ +.+|+ .+++.. . +.... .. .|..+..|+.+++..|.++..-+..|.++++|+.++.
T Consensus 264 I~~~aF~~-~~~L~~~l~l~~-~--l~~I~-~~-aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 264 IGQRVFSN-CGRLAGTLELPA-S--VTAIE-FG-AFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ECTTTTTT-CTTCCEEEEECT-T--CCEEC-TT-TTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred ehHHHhhC-ChhccEEEEEcc-c--ceEEc-hh-hhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 4444 455 99999 999988 5 44433 45 8999999999999999998555568999999998864
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.09 E-value=0.00058 Score=39.24 Aligned_cols=61 Identities=13% Similarity=0.157 Sum_probs=46.0
Q ss_pred CCcEEeccCCccccccccchhhhhcCcccccEEEccCCc-CCCcchhhhhcC----CCccEEeccCCc-Cc
Q 036214 19 SLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASND-LRGSLPWCLANM----TSLRILDVSYNQ-LT 83 (90)
Q Consensus 19 ~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~-~~~~~p~~~~~l----~~L~~l~l~~n~-l~ 83 (90)
.|+.||++++. ++... .. .+..+++|+.|+++++. +++.--..+..+ ++|+.|++++|. ++
T Consensus 62 ~L~~LDLs~~~--Itd~G-L~-~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 62 KIQAIDATDSC--IMSIG-FD-HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp CEEEEEEESCC--CCGGG-GG-GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred eEeEEeCcCCC--ccHHH-HH-HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence 58999999999 65443 44 67889999999999985 775443455554 369999999985 54
No 153
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.01 E-value=0.00092 Score=36.36 Aligned_cols=45 Identities=20% Similarity=0.184 Sum_probs=35.0
Q ss_pred cchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCC
Q 036214 8 SFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLR 59 (90)
Q Consensus 8 ~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~ 59 (90)
.+|..+. ..++.|+|++|. ++... +. .|..++.|+.+++.+|.+.
T Consensus 24 ~vP~~lp---~~l~~L~Ls~N~--l~~l~-~~-~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 24 SLPTAFP---VDTTELVLTGNN--LTALP-PG-LLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TSCSCCC---TTCSEEECTTSC--CSSCC-TT-TGGGCTTCCEEECCSSCCB
T ss_pred cCCCCCC---cCCCEEECCCCc--CCccC-hh-hhhhccccCEEEecCCCee
Confidence 5565533 379999999999 77653 44 7888999999999999765
No 154
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.11 E-value=0.0087 Score=34.93 Aligned_cols=60 Identities=18% Similarity=0.130 Sum_probs=26.9
Q ss_pred CCCcEEeccCCccccccccchh---hhhcCcccccEEEccCCcCCCcch----hhhhcCCCccEEeccCC
Q 036214 18 SSLKYLSLSGSTIGINSSMILD---QGLCSLVHLQELYIASNDLRGSLP----WCLANMTSLRILDVSYN 80 (90)
Q Consensus 18 ~~l~~L~l~~n~~~~~~~~~~~---~~~~~l~~l~~l~l~~n~~~~~~p----~~~~~l~~L~~l~l~~n 80 (90)
.+|+.|+|++|. +.... .. ..+..-..|+.|+++.|.+++.-. +.+..-..|+.|++++|
T Consensus 70 ~~L~~L~L~~n~--igd~g-a~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 70 KHIEKFSLANTA--ISDSE-ARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp SCCCEEECTTSC--CBHHH-HTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CCcCEEEccCCC--CChHH-HHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 455666666665 33211 11 012223446666666666653222 22223344666666543
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.85 E-value=0.018 Score=36.80 Aligned_cols=40 Identities=15% Similarity=0.051 Sum_probs=17.7
Q ss_pred hhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214 41 GLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL 82 (90)
Q Consensus 41 ~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l 82 (90)
.|..+..|+.+.+..+ ++..-...|..+ +|+.+.+.+|.+
T Consensus 318 aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 318 LLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp TTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSC
T ss_pred hhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCC
Confidence 3444444444444332 331223344444 555555555443
No 156
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.30 E-value=0.027 Score=32.87 Aligned_cols=65 Identities=23% Similarity=0.368 Sum_probs=40.6
Q ss_pred CCCCcEEeccCC-cccccccc--c-hhhhhcCcccccEEEccCCcCCCc----chhhhhcCCCccEEeccCCcCcc
Q 036214 17 MSSLKYLSLSGS-TIGINSSM--I-LDQGLCSLVHLQELYIASNDLRGS----LPWCLANMTSLRILDVSYNQLTG 84 (90)
Q Consensus 17 l~~l~~L~l~~n-~~~~~~~~--~-~~~~~~~l~~l~~l~l~~n~~~~~----~p~~~~~l~~L~~l~l~~n~l~~ 84 (90)
-+.|+.|+++++ . +.... . .. .+..-..|+.|+++.|++.+. +.+.+..-..|+.|+++.|.+..
T Consensus 40 n~~L~~L~L~~nn~--igd~ga~~la~-aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 40 DTDLKEVNINNMKR--VSKERIRSLIE-AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp CSSCCEEECTTCCS--SCHHHHHHHHH-HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred CCCccEEECCCCCC--CCHHHHHHHHH-HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 356888888875 6 33211 0 11 345556788888888888743 33344455678888888887754
No 157
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.27 E-value=0.049 Score=34.74 Aligned_cols=64 Identities=19% Similarity=0.081 Sum_probs=45.5
Q ss_pred HHHhhCCCCcEEeccCCccccc----cccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCC
Q 036214 12 SIGESMSSLKYLSLSGSTIGIN----SSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYN 80 (90)
Q Consensus 12 ~~~~~l~~l~~L~l~~n~~~~~----~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n 80 (90)
.|.+ +.+|+.+.+.++. .. ..+... .|..+.+|+.+.+. +.++..-...|..+.+|+.+.+..|
T Consensus 266 aF~~-c~~L~~l~l~~~~--~~~~~~~~I~~~-aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 266 AFYY-CPELAEVTTYGST--FNDDPEAMIHPY-CLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp TTTT-CTTCCEEEEESSC--CCCCTTCEECTT-TTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT
T ss_pred HhhC-CCCCCEEEeCCcc--ccCCcccEECHH-HhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc
Confidence 3455 8899999998877 43 012033 78888899999988 4566344567888899999988544
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.86 E-value=0.13 Score=32.44 Aligned_cols=67 Identities=18% Similarity=0.196 Sum_probs=42.1
Q ss_pred chhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214 9 FLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ 81 (90)
Q Consensus 9 ~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~ 81 (90)
+++..+..+.+|+.+.+..+- +... .. .|..+.+|+.+.+..+ ++..-...|.++.+|+.+++.++.
T Consensus 302 I~~~aF~~c~~L~~i~lp~~v---~~I~-~~-aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 302 LPESVFAGCISLKSIDIPEGI---TQIL-DD-AFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTTC---CEEC-TT-TTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred cCceeecCCCCcCEEEeCCcc---cEeh-Hh-HhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 333333337778888876543 2221 33 6777888888888654 553335678888888888887653
No 159
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=94.40 E-value=0.12 Score=32.60 Aligned_cols=17 Identities=24% Similarity=0.448 Sum_probs=10.2
Q ss_pred hHHHhhCCCCcEEeccCC
Q 036214 11 QSIGESMSSLKYLSLSGS 28 (90)
Q Consensus 11 ~~~~~~l~~l~~L~l~~n 28 (90)
..+.. ++.|+.|.+.++
T Consensus 166 ~ll~~-~P~L~~L~L~g~ 182 (362)
T 2ra8_A 166 PVLDA-MPLLNNLKIKGT 182 (362)
T ss_dssp HHHHT-CTTCCEEEEECC
T ss_pred HHHhc-CCCCcEEEEeCC
Confidence 33344 667777777665
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=93.87 E-value=0.087 Score=32.85 Aligned_cols=56 Identities=16% Similarity=0.220 Sum_probs=30.9
Q ss_pred CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEec
Q 036214 17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDV 77 (90)
Q Consensus 17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l 77 (90)
+.+|+.+.+..+. +.... .. .|..+..|+.+.+..+ ++..-...|.++.+|+.+.+
T Consensus 285 c~~L~~i~l~~~~--i~~I~-~~-aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 285 CSNLTKVVMDNSA--IETLE-PR-VFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp CTTCCEEEECCTT--CCEEC-TT-TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred ccccccccccccc--cceeh-hh-hhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence 5666666666655 33322 33 5666666777766543 43222345666666666555
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=93.52 E-value=0.083 Score=33.26 Aligned_cols=57 Identities=12% Similarity=0.079 Sum_probs=31.5
Q ss_pred CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccC
Q 036214 17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSY 79 (90)
Q Consensus 17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~ 79 (90)
+.+|+.+++..+- .... .. .|..+.+|+.+.+..+ ++..-...|..+.+|+.+.+..
T Consensus 319 c~~L~~i~lp~~v---~~I~-~~-aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 319 CTSLVSIDLPYLV---EEIG-KR-SFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp CTTCCEECCCTTC---CEEC-TT-TTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred CCCCCEEEeCCcc---cEEh-HH-hccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 5666666665332 2211 22 5666666777766554 4423334566677777666643
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=90.23 E-value=0.9 Score=28.23 Aligned_cols=58 Identities=10% Similarity=0.119 Sum_probs=36.7
Q ss_pred CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccC
Q 036214 17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSY 79 (90)
Q Consensus 17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~ 79 (90)
+..++.+.+..+- .... .. .|..+.+|+.+.+..+.++..-...|.++.+|+.+.+..
T Consensus 262 ~~~l~~i~l~~~i---~~i~-~~-aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 262 CTALKTLNFYAKV---KTVP-YL-LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp CTTCCEEEECCCC---SEEC-TT-TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred eehhccccccccc---eecc-cc-ccccccccccccccccccceehhhhhcCCCCCCEEEcCc
Confidence 4556666554332 2211 22 577778888888887777633446778888888888754
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=86.14 E-value=1.3 Score=27.87 Aligned_cols=61 Identities=10% Similarity=0.117 Sum_probs=36.5
Q ss_pred HHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214 13 IGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL 82 (90)
Q Consensus 13 ~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l 82 (90)
|.+ +.+|+.+.+..+- .... .. .|..+.+|+.+++.++... -..+..+..|+.+.+..+.+
T Consensus 330 F~~-C~~L~~i~ip~sv---~~I~-~~-aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 330 FAG-CEQLERIAIPSSV---TKIP-ES-AFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TTT-CTTCCEEEECTTC---CBCC-GG-GGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred hhC-CCCCCEEEECccc---CEEh-Hh-HhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 445 8999999997543 3322 34 7999999999999887543 24566677888887766543
No 164
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=86.11 E-value=1.3 Score=27.77 Aligned_cols=58 Identities=17% Similarity=0.063 Sum_probs=40.6
Q ss_pred CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCC
Q 036214 17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYN 80 (90)
Q Consensus 17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n 80 (90)
+..|+.+.+..+- .... .. .|..+..|+.+++..+ ++..-...|.++.+|+.+.+..+
T Consensus 296 ~~~L~~i~l~~~i---~~I~-~~-aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 296 CSSLTEVKLLDSV---KFIG-EE-AFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp CTTCCEEEECTTC---CEEC-TT-TTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred ccccccccccccc---ceec-hh-hhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 7788888886543 2222 33 6888889999988754 55333567888999999888654
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=55.45 E-value=19 Score=18.22 Aligned_cols=38 Identities=5% Similarity=0.094 Sum_probs=23.6
Q ss_pred HHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCC
Q 036214 13 IGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASN 56 (90)
Q Consensus 13 ~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n 56 (90)
|.+ +..|+.+.+..+- +... .. .|..+.+|+.+.+...
T Consensus 16 F~~-c~~L~~i~iP~~v---~~Ig-~~-aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 16 FAG-NTVIREITVQPNI---GLLY-DG-MFSGCTALEKLILTGE 53 (100)
T ss_dssp TTT-CTTCCCEEECTTS---SCCC-TT-SSTTCTTCCCEEECCS
T ss_pred hcC-CCCCcEEEcCCch---heEc-HH-HHhccCCccEEEEcCC
Confidence 444 7778887776554 2222 33 6777777877776654
Done!