Query 036215
Match_columns 289
No_of_seqs 201 out of 1474
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 18:04:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036215.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036215hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gv2_A C-MYB, MYB proto-oncoge 100.0 3.7E-35 1.3E-39 234.3 9.5 105 24-129 1-105 (105)
2 3zqc_A MYB3; transcription-DNA 100.0 1.7E-34 5.8E-39 239.6 10.9 111 26-137 1-111 (131)
3 2k9n_A MYB24; R2R3 domain, DNA 100.0 1E-34 3.5E-39 233.2 7.5 104 27-131 1-104 (107)
4 3osg_A MYB21; transcription-DN 100.0 6.3E-34 2.2E-38 234.9 9.2 107 21-129 5-111 (126)
5 1h8a_C AMV V-MYB, MYB transfor 100.0 4.8E-34 1.6E-38 235.7 8.2 107 22-129 22-128 (128)
6 1h89_C C-MYB, MYB proto-oncoge 100.0 8.2E-33 2.8E-37 236.0 3.3 124 24-148 3-127 (159)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 9.6E-32 3.3E-36 229.4 8.3 107 22-129 53-159 (159)
8 1h8a_C AMV V-MYB, MYB transfor 99.9 1.3E-23 4.4E-28 173.2 3.0 95 53-148 1-96 (128)
9 2dim_A Cell division cycle 5-l 99.9 1E-22 3.4E-27 151.6 1.9 66 22-88 4-69 (70)
10 2llk_A Cyclin-D-binding MYB-li 99.8 2.3E-19 7.8E-24 135.1 4.7 58 68-126 11-68 (73)
11 1ign_A Protein (RAP1); RAP1,ye 99.8 4.2E-19 1.4E-23 159.8 5.8 105 23-128 4-200 (246)
12 2juh_A Telomere binding protei 99.7 1.6E-18 5.4E-23 142.1 3.7 83 21-104 11-103 (121)
13 2din_A Cell division cycle 5-l 99.7 6.5E-18 2.2E-22 124.2 6.6 60 73-133 2-61 (66)
14 2dim_A Cell division cycle 5-l 99.7 5.5E-18 1.9E-22 125.9 6.2 65 75-139 4-69 (70)
15 2cu7_A KIAA1915 protein; nucle 99.7 7.3E-18 2.5E-22 126.0 6.7 64 74-138 3-66 (72)
16 2roh_A RTBP1, telomere binding 99.7 5.6E-18 1.9E-22 139.0 6.3 80 21-101 25-114 (122)
17 2d9a_A B-MYB, MYB-related prot 99.7 9.1E-18 3.1E-22 121.0 2.9 57 22-79 3-59 (60)
18 1gvd_A MYB proto-oncogene prot 99.7 1E-17 3.4E-22 117.5 2.8 52 25-77 1-52 (52)
19 2d9a_A B-MYB, MYB-related prot 99.7 4E-17 1.4E-21 117.7 5.2 55 75-129 3-58 (60)
20 1guu_A C-MYB, MYB proto-oncoge 99.7 1.7E-17 5.7E-22 116.3 1.8 52 25-77 1-52 (52)
21 1guu_A C-MYB, MYB proto-oncoge 99.7 1.2E-16 4.1E-21 111.9 5.9 50 78-127 1-51 (52)
22 1ity_A TRF1; helix-turn-helix, 99.6 3E-17 1E-21 121.6 2.2 62 22-84 5-68 (69)
23 1gvd_A MYB proto-oncogene prot 99.6 2.3E-16 7.7E-21 110.6 6.1 50 78-127 1-51 (52)
24 1ity_A TRF1; helix-turn-helix, 99.6 2.7E-16 9.1E-21 116.5 6.8 62 73-134 3-67 (69)
25 1w0t_A Telomeric repeat bindin 99.6 5.6E-16 1.9E-20 109.1 5.9 49 79-127 1-52 (53)
26 1x41_A Transcriptional adaptor 99.6 7.9E-16 2.7E-20 111.1 5.5 53 75-127 3-56 (60)
27 3sjm_A Telomeric repeat-bindin 99.6 1.3E-16 4.6E-21 116.9 1.4 56 24-79 8-64 (64)
28 1x41_A Transcriptional adaptor 99.6 4.1E-16 1.4E-20 112.7 2.0 54 23-77 4-57 (60)
29 2yum_A ZZZ3 protein, zinc fing 99.6 2.1E-15 7E-20 113.3 5.4 57 75-131 3-65 (75)
30 3sjm_A Telomeric repeat-bindin 99.6 3.1E-15 1.1E-19 109.7 5.9 52 78-129 9-63 (64)
31 2ltp_A Nuclear receptor corepr 99.3 4E-16 1.4E-20 121.4 0.0 57 72-128 8-64 (89)
32 1gv2_A C-MYB, MYB proto-oncoge 99.5 1.8E-15 6E-20 120.1 3.4 72 77-148 1-73 (105)
33 3osg_A MYB21; transcription-DN 99.5 2.4E-15 8.2E-20 123.5 4.2 75 75-149 6-80 (126)
34 1w0t_A Telomeric repeat bindin 99.5 8.8E-16 3E-20 108.1 1.3 49 26-75 1-51 (53)
35 2elk_A SPCC24B10.08C protein; 99.5 9.5E-15 3.2E-19 104.9 5.9 51 75-125 4-56 (58)
36 2yum_A ZZZ3 protein, zinc fing 99.5 9.2E-16 3.1E-20 115.2 0.1 61 21-82 2-67 (75)
37 2din_A Cell division cycle 5-l 99.5 5.1E-16 1.8E-20 113.9 -1.6 58 21-81 3-60 (66)
38 2elk_A SPCC24B10.08C protein; 99.5 2.4E-15 8.2E-20 108.0 1.9 52 23-74 5-56 (58)
39 2k9n_A MYB24; R2R3 domain, DNA 99.5 1E-14 3.5E-19 116.5 3.0 69 80-148 1-70 (107)
40 3zqc_A MYB3; transcription-DNA 99.5 2E-14 6.9E-19 118.7 3.9 71 80-150 2-73 (131)
41 2cu7_A KIAA1915 protein; nucle 99.5 6.5E-15 2.2E-19 109.9 0.4 58 21-80 3-60 (72)
42 2cqr_A RSGI RUH-043, DNAJ homo 99.4 8.3E-14 2.8E-18 104.6 5.9 51 76-126 14-68 (73)
43 2aje_A Telomere repeat-binding 99.4 5.3E-14 1.8E-18 112.6 4.0 79 22-100 8-95 (105)
44 2yus_A SWI/SNF-related matrix- 99.4 7.4E-14 2.5E-18 106.4 3.1 56 16-73 7-62 (79)
45 1x58_A Hypothetical protein 49 99.4 4.3E-13 1.5E-17 97.3 6.4 50 78-127 6-58 (62)
46 2ckx_A NGTRF1, telomere bindin 99.4 1.4E-13 4.8E-18 105.8 3.3 69 28-97 1-79 (83)
47 1ign_A Protein (RAP1); RAP1,ye 99.4 3.2E-13 1.1E-17 121.6 5.5 71 76-147 4-80 (246)
48 2llk_A Cyclin-D-binding MYB-li 99.4 1.5E-13 5E-18 103.3 2.3 56 21-80 17-72 (73)
49 2yus_A SWI/SNF-related matrix- 99.4 3.1E-13 1E-17 103.0 4.1 48 77-124 15-62 (79)
50 2ckx_A NGTRF1, telomere bindin 99.4 8.7E-13 3E-17 101.4 6.0 48 81-128 1-53 (83)
51 2juh_A Telomere binding protei 99.3 2.2E-13 7.4E-18 111.6 2.8 55 74-128 11-70 (121)
52 2aje_A Telomere repeat-binding 99.3 2.4E-12 8.1E-17 103.0 7.9 54 75-128 8-66 (105)
53 2roh_A RTBP1, telomere binding 99.3 2.5E-12 8.7E-17 105.4 5.3 54 75-128 26-84 (122)
54 2ltp_A Nuclear receptor corepr 98.9 4.2E-13 1.4E-17 104.2 0.0 53 22-76 11-63 (89)
55 2cqr_A RSGI RUH-043, DNAJ homo 99.3 1.1E-12 3.7E-17 98.6 1.8 57 18-75 9-68 (73)
56 2cjj_A Radialis; plant develop 99.2 6.6E-12 2.3E-16 98.4 5.6 50 79-128 7-60 (93)
57 3hm5_A DNA methyltransferase 1 99.1 1.5E-10 5.2E-15 90.5 5.8 67 63-133 17-88 (93)
58 2eqr_A N-COR1, N-COR, nuclear 99.1 2.4E-10 8.4E-15 82.5 6.3 48 79-126 11-58 (61)
59 2cqq_A RSGI RUH-037, DNAJ homo 98.9 8.8E-10 3E-14 82.4 5.1 51 77-128 5-59 (72)
60 2cjj_A Radialis; plant develop 98.9 1.2E-10 4.2E-15 91.2 0.1 47 27-74 8-57 (93)
61 2iw5_B Protein corest, REST co 98.8 4.6E-09 1.6E-13 93.9 6.0 50 78-127 131-180 (235)
62 1x58_A Hypothetical protein 49 98.7 4E-09 1.4E-13 76.5 1.6 48 26-75 7-57 (62)
63 2eqr_A N-COR1, N-COR, nuclear 98.6 1.3E-08 4.5E-13 73.4 2.5 48 24-73 9-56 (61)
64 1wgx_A KIAA1903 protein; MYB D 98.6 4.1E-08 1.4E-12 73.5 4.5 48 80-127 8-59 (73)
65 2xag_B REST corepressor 1; ami 98.5 5.1E-08 1.7E-12 95.9 4.7 47 81-127 381-427 (482)
66 2cqq_A RSGI RUH-037, DNAJ homo 98.5 1.5E-08 5E-13 75.7 -0.1 48 26-75 7-57 (72)
67 1fex_A TRF2-interacting telome 98.5 1.3E-07 4.6E-12 67.9 4.8 47 80-126 2-58 (59)
68 1fex_A TRF2-interacting telome 98.4 6.8E-08 2.3E-12 69.4 0.6 48 27-75 2-58 (59)
69 1wgx_A KIAA1903 protein; MYB D 98.3 1.2E-07 3.9E-12 71.1 0.7 47 29-76 10-59 (73)
70 2yqk_A Arginine-glutamic acid 98.3 1.5E-06 5.2E-11 63.0 6.6 51 75-125 4-55 (63)
71 1ug2_A 2610100B20RIK gene prod 98.2 1.7E-06 5.7E-11 67.0 4.7 47 81-127 34-83 (95)
72 2iw5_B Protein corest, REST co 98.1 6.4E-07 2.2E-11 80.1 1.9 49 25-75 131-179 (235)
73 4eef_G F-HB80.4, designed hema 98.1 6.4E-07 2.2E-11 66.9 1.6 43 80-122 20-66 (74)
74 2lr8_A CAsp8-associated protei 97.3 4.8E-07 1.7E-11 66.4 0.0 45 82-127 16-63 (70)
75 4iej_A DNA methyltransferase 1 98.0 1.5E-05 5E-10 62.2 6.6 60 69-132 23-87 (93)
76 4eef_G F-HB80.4, designed hema 97.9 2.1E-06 7.3E-11 64.0 0.4 42 29-71 22-66 (74)
77 1ofc_X ISWI protein; nuclear p 97.8 2E-05 6.9E-10 73.5 6.0 99 28-127 111-275 (304)
78 4a69_C Nuclear receptor corepr 97.8 2.7E-05 9.2E-10 60.7 5.8 46 80-125 43-88 (94)
79 2crg_A Metastasis associated p 97.8 3.5E-05 1.2E-09 56.9 6.1 44 80-123 8-52 (70)
80 2yqk_A Arginine-glutamic acid 97.6 2.9E-05 9.9E-10 56.1 2.5 49 22-72 4-53 (63)
81 2ebi_A DNA binding protein GT- 97.2 0.00019 6.6E-09 54.4 3.1 48 80-127 4-65 (86)
82 2xag_B REST corepressor 1; ami 97.1 0.00012 4E-09 72.1 1.8 47 26-74 379-425 (482)
83 3hm5_A DNA methyltransferase 1 97.1 0.00011 3.8E-09 57.3 1.0 49 25-74 28-80 (93)
84 2crg_A Metastasis associated p 96.7 0.00044 1.5E-08 50.9 1.5 43 28-72 9-52 (70)
85 4a69_C Nuclear receptor corepr 96.7 0.00042 1.4E-08 53.9 1.3 43 27-71 43-85 (94)
86 1ug2_A 2610100B20RIK gene prod 96.7 0.0011 3.7E-08 51.3 3.3 44 28-72 34-79 (95)
87 2ebi_A DNA binding protein GT- 96.5 0.00016 5.5E-09 54.8 -2.2 49 26-74 3-63 (86)
88 2y9y_A Imitation switch protei 96.2 0.013 4.3E-07 56.0 8.1 100 28-127 124-291 (374)
89 2lr8_A CAsp8-associated protei 95.1 0.00086 2.9E-08 49.2 0.0 48 26-75 13-62 (70)
90 1irz_A ARR10-B; helix-turn-hel 95.1 0.044 1.5E-06 39.6 5.6 48 78-125 5-57 (64)
91 4b4c_A Chromodomain-helicase-D 94.5 0.025 8.6E-07 49.0 3.7 35 21-55 128-162 (211)
92 4iej_A DNA methyltransferase 1 93.9 0.016 5.4E-07 45.0 1.1 49 25-74 28-80 (93)
93 1ofc_X ISWI protein; nuclear p 93.5 0.13 4.3E-06 47.9 6.5 48 80-127 110-158 (304)
94 4b4c_A Chromodomain-helicase-D 91.6 0.19 6.5E-06 43.3 4.9 49 79-127 6-59 (211)
95 2xb0_X Chromo domain-containin 90.7 0.17 5.7E-06 46.3 3.6 27 29-55 170-196 (270)
96 2xb0_X Chromo domain-containin 79.6 3.4 0.00012 37.6 6.4 48 80-127 3-55 (270)
97 1irz_A ARR10-B; helix-turn-hel 77.4 0.86 3E-05 32.8 1.4 45 26-70 6-53 (64)
98 2o8x_A Probable RNA polymerase 69.2 5 0.00017 27.3 3.8 41 86-127 18-58 (70)
99 1ku3_A Sigma factor SIGA; heli 66.9 5.9 0.0002 27.7 3.8 41 86-127 13-57 (73)
100 2p7v_B Sigma-70, RNA polymeras 62.5 6.2 0.00021 27.2 3.2 41 86-127 8-52 (68)
101 3hug_A RNA polymerase sigma fa 55.1 12 0.0004 27.4 3.8 41 86-127 40-80 (92)
102 2y9y_A Imitation switch protei 54.9 21 0.00073 33.8 6.3 46 81-126 124-171 (374)
103 3cz6_A DNA-binding protein RAP 51.0 13 0.00043 31.5 3.6 25 23-47 110-142 (168)
104 2li6_A SWI/SNF chromatin-remod 46.4 11 0.00039 29.4 2.6 38 90-127 53-98 (116)
105 1tty_A Sigma-A, RNA polymerase 46.2 20 0.00069 25.9 3.8 41 86-127 21-65 (87)
106 2q1z_A RPOE, ECF SIGE; ECF sig 45.6 17 0.00057 29.2 3.6 31 96-127 148-178 (184)
107 1x3u_A Transcriptional regulat 45.5 28 0.00096 24.0 4.4 42 83-127 17-58 (79)
108 2lm1_A Lysine-specific demethy 45.2 28 0.00094 26.6 4.6 38 90-127 48-97 (107)
109 1or7_A Sigma-24, RNA polymeras 44.6 25 0.00086 28.2 4.6 35 92-127 149-183 (194)
110 2jrz_A Histone demethylase jar 44.4 24 0.00083 27.5 4.2 38 90-127 44-93 (117)
111 3ulq_B Transcriptional regulat 43.8 33 0.0011 25.2 4.7 46 79-127 26-71 (90)
112 2rq5_A Protein jumonji; develo 41.1 5.6 0.00019 31.8 -0.0 57 37-96 46-113 (121)
113 1kkx_A Transcription regulator 40.4 18 0.00061 28.8 2.9 39 90-128 52-98 (123)
114 2cxy_A BAF250B subunit, HBAF25 39.8 32 0.0011 27.1 4.3 38 90-127 55-104 (125)
115 2eqy_A RBP2 like, jumonji, at 39.8 32 0.0011 27.1 4.3 38 90-127 46-95 (122)
116 3c57_A Two component transcrip 39.6 30 0.001 25.5 3.9 43 82-127 27-69 (95)
117 1je8_A Nitrate/nitrite respons 38.9 29 0.001 24.8 3.7 43 82-127 21-63 (82)
118 1xsv_A Hypothetical UPF0122 pr 37.8 40 0.0014 25.8 4.5 41 86-127 28-68 (113)
119 1fse_A GERE; helix-turn-helix 37.3 34 0.0012 23.1 3.7 44 81-127 10-53 (74)
120 2jpc_A SSRB; DNA binding prote 37.0 47 0.0016 21.7 4.2 38 88-127 3-40 (61)
121 1c20_A DEAD ringer protein; DN 36.5 40 0.0014 26.6 4.4 38 90-127 56-106 (128)
122 3i4p_A Transcriptional regulat 36.3 25 0.00085 28.4 3.2 45 86-131 3-48 (162)
123 2kk0_A AT-rich interactive dom 36.3 35 0.0012 27.7 4.1 38 90-127 68-118 (145)
124 1rp3_A RNA polymerase sigma fa 35.1 40 0.0014 27.8 4.5 41 86-127 190-230 (239)
125 3mzy_A RNA polymerase sigma-H 34.8 34 0.0012 26.3 3.7 31 96-127 121-151 (164)
126 2yqf_A Ankyrin-1; death domain 34.2 44 0.0015 25.6 4.2 35 83-118 13-47 (111)
127 2rq5_A Protein jumonji; develo 33.7 35 0.0012 27.0 3.6 75 27-127 7-96 (121)
128 2rnj_A Response regulator prot 32.5 35 0.0012 24.7 3.2 43 82-127 29-71 (91)
129 2k27_A Paired box protein PAX- 31.0 1.4E+02 0.0047 23.5 6.9 78 27-109 23-111 (159)
130 3cz6_A DNA-binding protein RAP 30.1 26 0.0009 29.5 2.4 25 68-92 101-126 (168)
131 2jxj_A Histone demethylase jar 29.3 24 0.00083 26.3 1.9 38 90-127 40-89 (96)
132 1u78_A TC3 transposase, transp 28.8 1.7E+02 0.0058 21.9 6.9 88 28-121 5-100 (141)
133 1p4w_A RCSB; solution structur 27.1 87 0.003 23.4 4.7 45 80-127 32-76 (99)
134 2of5_H Leucine-rich repeat and 27.0 50 0.0017 25.7 3.4 30 88-118 13-42 (118)
135 1tc3_C Protein (TC3 transposas 26.5 1.1E+02 0.0036 18.2 4.6 38 82-121 5-42 (51)
136 1s7o_A Hypothetical UPF0122 pr 25.7 71 0.0024 24.5 4.1 42 83-126 23-64 (113)
137 2of5_A Death domain-containing 25.4 62 0.0021 25.2 3.6 37 77-117 16-52 (114)
138 1wxp_A THO complex subunit 1; 24.7 83 0.0028 24.0 4.3 31 88-119 18-48 (110)
139 2e1c_A Putative HTH-type trans 24.7 65 0.0022 26.3 3.9 45 86-131 27-72 (171)
140 1k78_A Paired box protein PAX5 24.1 1.2E+02 0.0041 23.4 5.3 100 25-128 28-146 (149)
141 2o71_A Death domain-containing 24.1 65 0.0022 25.1 3.6 27 90-117 26-52 (115)
142 2dbb_A Putative HTH-type trans 23.8 87 0.003 24.4 4.4 45 86-131 9-54 (151)
143 2cyy_A Putative HTH-type trans 21.7 88 0.003 24.5 4.0 45 86-131 7-52 (151)
144 1ig6_A MRF-2, modulator recogn 21.5 33 0.0011 26.2 1.3 38 90-127 37-87 (107)
No 1
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=3.7e-35 Score=234.29 Aligned_cols=105 Identities=43% Similarity=0.850 Sum_probs=99.6
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCcceeccccCcccCccccccccccccCCCCCCCCCCHHHHHHHHHHHHhhCCchh
Q 036215 24 GIKKGPWTPEEDEILSNYIKREGEGQWRTLPKRAGLLRCGKSCRLRWMNYLRPSIKRGHIAPDEEDLILRLHRLLGNRWS 103 (289)
Q Consensus 24 ~lkkg~WT~EEDe~L~~~V~~~g~~~W~~IA~~~~~~Rt~kqCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~kWs 103 (289)
.+++|+||+|||++|+++|.+||.++|..||..|++ |+++||++||.++|+|.+++++||+|||++|++++.+||++|+
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 79 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 79 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTT-CCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcC-CCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence 478999999999999999999998899999999987 9999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCHHHHHHHHHHHhhhhh
Q 036215 104 LIAGRIPGRTDNEIKNYWNTRLRKKL 129 (289)
Q Consensus 104 ~IA~~lpgRT~~q~knRW~~~lrk~~ 129 (289)
.||+.|||||+++|++||+.++++++
T Consensus 80 ~Ia~~l~gRt~~~~k~rw~~~~~~~~ 105 (105)
T 1gv2_A 80 EIAKLLPGRTDNAIKNHWNSTMRRKV 105 (105)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999998763
No 2
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=100.00 E-value=1.7e-34 Score=239.59 Aligned_cols=111 Identities=38% Similarity=0.749 Sum_probs=105.4
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCcceeccccCcccCccccccccccccCCCCCCCCCCHHHHHHHHHHHHhhCCchhhh
Q 036215 26 KKGPWTPEEDEILSNYIKREGEGQWRTLPKRAGLLRCGKSCRLRWMNYLRPSIKRGHIAPDEEDLILRLHRLLGNRWSLI 105 (289)
Q Consensus 26 kkg~WT~EEDe~L~~~V~~~g~~~W~~IA~~~~~~Rt~kqCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~kWs~I 105 (289)
.||+||+|||++|+++|.+||.++|..||..|++ |+++||++||.++|+|.+++++||+|||++|+++|.+||++|+.|
T Consensus 1 vKg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~I 79 (131)
T 3zqc_A 1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPN-RSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVI 79 (131)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTT-SCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCC-CCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHH
Confidence 3799999999999999999998899999999987 999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCHHHHHHHHHHHhhhhhhhCCCCCC
Q 036215 106 AGRIPGRTDNEIKNYWNTRLRKKLISQGINPT 137 (289)
Q Consensus 106 A~~lpgRT~~q~knRW~~~lrk~~~~~~~~~~ 137 (289)
|+.|||||+++|++||+.+|++++....++.+
T Consensus 80 a~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~ 111 (131)
T 3zqc_A 80 AKLIPGRTDNAIKNRWNSSISKRISTNSNHKE 111 (131)
T ss_dssp TTTSTTCCHHHHHHHHHHTTGGGCCCCTTSCC
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHhhcCCCccc
Confidence 99999999999999999999999877665533
No 3
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=100.00 E-value=1e-34 Score=233.15 Aligned_cols=104 Identities=29% Similarity=0.537 Sum_probs=99.9
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCcceeccccCcccCccccccccccccCCCCCCCCCCHHHHHHHHHHHHhhCCchhhhh
Q 036215 27 KGPWTPEEDEILSNYIKREGEGQWRTLPKRAGLLRCGKSCRLRWMNYLRPSIKRGHIAPDEEDLILRLHRLLGNRWSLIA 106 (289)
Q Consensus 27 kg~WT~EEDe~L~~~V~~~g~~~W~~IA~~~~~~Rt~kqCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~kWs~IA 106 (289)
||+||+|||++|+++|.+||.++|..||..|++ |+++||++||.++|+|.+++++||+|||++|+++|.+||++|+.||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMIT-RNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTT-SCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCC-CCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 689999999999999999998899999999987 9999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHhhhhhhh
Q 036215 107 GRIPGRTDNEIKNYWNTRLRKKLIS 131 (289)
Q Consensus 107 ~~lpgRT~~q~knRW~~~lrk~~~~ 131 (289)
+.|||||+++|++||+.++++....
T Consensus 80 ~~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 80 KFLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred HHCCCCCHHHHHHHHHHHHhhHHHh
Confidence 9999999999999999999886543
No 4
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=100.00 E-value=6.3e-34 Score=234.85 Aligned_cols=107 Identities=36% Similarity=0.638 Sum_probs=102.0
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCcceeccccCcccCccccccccccccCCCCCCCCCCHHHHHHHHHHHHhhCC
Q 036215 21 SKVGIKKGPWTPEEDEILSNYIKREGEGQWRTLPKRAGLLRCGKSCRLRWMNYLRPSIKRGHIAPDEEDLILRLHRLLGN 100 (289)
Q Consensus 21 ~k~~lkkg~WT~EEDe~L~~~V~~~g~~~W~~IA~~~~~~Rt~kqCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~ 100 (289)
.+...+||+||+|||++|+++|.+||. +|..||..|++ |+++||++||.++|+|.+++++||+|||++|+++|.+||+
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~ 82 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPN-RNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR 82 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTT-CCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCC-CCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 367899999999999999999999997 99999999987 9999999999999999999999999999999999999999
Q ss_pred chhhhhccCCCCCHHHHHHHHHHHhhhhh
Q 036215 101 RWSLIAGRIPGRTDNEIKNYWNTRLRKKL 129 (289)
Q Consensus 101 kWs~IA~~lpgRT~~q~knRW~~~lrk~~ 129 (289)
+|+.||+.|||||+++||+||+.++++..
T Consensus 83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k~~ 111 (126)
T 3osg_A 83 QWAIIAKFFPGRTDIHIKNRWVTISNKLG 111 (126)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999998753
No 5
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=100.00 E-value=4.8e-34 Score=235.74 Aligned_cols=107 Identities=41% Similarity=0.831 Sum_probs=102.4
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCcceeccccCcccCccccccccccccCCCCCCCCCCHHHHHHHHHHHHhhCCc
Q 036215 22 KVGIKKGPWTPEEDEILSNYIKREGEGQWRTLPKRAGLLRCGKSCRLRWMNYLRPSIKRGHIAPDEEDLILRLHRLLGNR 101 (289)
Q Consensus 22 k~~lkkg~WT~EEDe~L~~~V~~~g~~~W~~IA~~~~~~Rt~kqCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~k 101 (289)
.|.+++|+||+|||++|+++|.+||.++|..||..|++ |+++||++||.++|+|.+++++||+|||++|++++.+||++
T Consensus 22 ~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~~ 100 (128)
T 1h8a_C 22 NPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNR 100 (128)
T ss_dssp CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSS-CCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHCSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcC-CcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHCcC
Confidence 58899999999999999999999998899999999987 99999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCCCHHHHHHHHHHHhhhhh
Q 036215 102 WSLIAGRIPGRTDNEIKNYWNTRLRKKL 129 (289)
Q Consensus 102 Ws~IA~~lpgRT~~q~knRW~~~lrk~~ 129 (289)
|+.||+.|||||+++|++||+.++++++
T Consensus 101 W~~Ia~~l~gRt~~~~k~r~~~~~~~~~ 128 (128)
T 1h8a_C 101 WAEIAKLLPGRTDNAVKNHWNSTMRRKV 128 (128)
T ss_dssp HHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 9999999999999999999999998763
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=8.2e-33 Score=236.02 Aligned_cols=124 Identities=23% Similarity=0.535 Sum_probs=79.1
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCcceeccccCcccCccccccccccccCCCCCCCCCCHHHHHHHHHHHHhhCC-ch
Q 036215 24 GIKKGPWTPEEDEILSNYIKREGEGQWRTLPKRAGLLRCGKSCRLRWMNYLRPSIKRGHIAPDEEDLILRLHRLLGN-RW 102 (289)
Q Consensus 24 ~lkkg~WT~EEDe~L~~~V~~~g~~~W~~IA~~~~~~Rt~kqCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~-kW 102 (289)
++++|+||+|||++|+++|.+||.++|..||..|++ |+++||++||.++|+|.+++++||+|||++|+++|.+||. +|
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W 81 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN-RTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW 81 (159)
T ss_dssp -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCC-CCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence 578999999999999999999998899999999987 9999999999999999999999999999999999999996 69
Q ss_pred hhhhccCCCCCHHHHHHHHHHHhhhhhhhCCCCCCCCccccccccc
Q 036215 103 SLIAGRIPGRTDNEIKNYWNTRLRKKLISQGINPTTHKPLIFNQVV 148 (289)
Q Consensus 103 s~IA~~lpgRT~~q~knRW~~~lrk~~~~~~~~~~~~k~l~~~~~~ 148 (289)
..||..|||||+.+|++||+++|.+.+.+.+|+++++..|......
T Consensus 82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~ 127 (159)
T 1h89_C 82 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKR 127 (159)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998887765544
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=9.6e-32 Score=229.37 Aligned_cols=107 Identities=42% Similarity=0.832 Sum_probs=102.3
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCcceeccccCcccCccccccccccccCCCCCCCCCCHHHHHHHHHHHHhhCCc
Q 036215 22 KVGIKKGPWTPEEDEILSNYIKREGEGQWRTLPKRAGLLRCGKSCRLRWMNYLRPSIKRGHIAPDEEDLILRLHRLLGNR 101 (289)
Q Consensus 22 k~~lkkg~WT~EEDe~L~~~V~~~g~~~W~~IA~~~~~~Rt~kqCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~k 101 (289)
.|.+++|+||+|||++|+++|.+||..+|..||..|++ |++.||++||.++|+|.+++++||+|||.+|++++.+||++
T Consensus 53 ~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~ 131 (159)
T 1h89_C 53 NPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNR 131 (159)
T ss_dssp CTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTT-CCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSC
T ss_pred CCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCC-CCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCC
Confidence 68899999999999999999999998789999999987 99999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCCCHHHHHHHHHHHhhhhh
Q 036215 102 WSLIAGRIPGRTDNEIKNYWNTRLRKKL 129 (289)
Q Consensus 102 Ws~IA~~lpgRT~~q~knRW~~~lrk~~ 129 (289)
|+.||+.|||||+++||+||+.++++++
T Consensus 132 W~~Ia~~l~gRt~~~~knr~~~~~r~~~ 159 (159)
T 1h89_C 132 WAEIAKLLPGRTDNAIKNHWNSTMRRKV 159 (159)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 9999999999999999999999998763
No 8
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.87 E-value=1.3e-23 Score=173.16 Aligned_cols=95 Identities=19% Similarity=0.422 Sum_probs=69.3
Q ss_pred eccccCcccCccccccccccccCCCCCCCCCCHHHHHHHHHHHHhhCC-chhhhhccCCCCCHHHHHHHHHHHhhhhhhh
Q 036215 53 LPKRAGLLRCGKSCRLRWMNYLRPSIKRGHIAPDEEDLILRLHRLLGN-RWSLIAGRIPGRTDNEIKNYWNTRLRKKLIS 131 (289)
Q Consensus 53 IA~~~~~~Rt~kqCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~-kWs~IA~~lpgRT~~q~knRW~~~lrk~~~~ 131 (289)
||+.|++ |+++||++||.++|+|.+++++||+|||++|+++|.+||. +|..||..|||||+.+|++||+.+|.+.+.+
T Consensus 1 Ia~~~~~-Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~ 79 (128)
T 1h8a_C 1 MEAVIKN-RTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK 79 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred CccccCC-CCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence 6888887 9999999999999999999999999999999999999996 6999999999999999999999999999999
Q ss_pred CCCCCCCCccccccccc
Q 036215 132 QGINPTTHKPLIFNQVV 148 (289)
Q Consensus 132 ~~~~~~~~k~l~~~~~~ 148 (289)
++|+++++..|......
T Consensus 80 ~~WT~eEd~~L~~~~~~ 96 (128)
T 1h8a_C 80 TSWTEEEDRIIYQAHKR 96 (128)
T ss_dssp SCCCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 99999999887766544
No 9
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1e-22 Score=151.63 Aligned_cols=66 Identities=30% Similarity=0.593 Sum_probs=63.4
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCcceeccccCcccCccccccccccccCCCCCCCCCCHHHH
Q 036215 22 KVGIKKGPWTPEEDEILSNYIKREGEGQWRTLPKRAGLLRCGKSCRLRWMNYLRPSIKRGHIAPDEE 88 (289)
Q Consensus 22 k~~lkkg~WT~EEDe~L~~~V~~~g~~~W~~IA~~~~~~Rt~kqCr~Rw~n~L~p~lkrg~WT~EED 88 (289)
.+.+++|+||+|||++|+++|.+||.++|..||..|++ |+++||++||.++|+|.+++++||+|||
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHR-KSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTT-CCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcC-CCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 46899999999999999999999998899999999997 9999999999999999999999999997
No 10
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.76 E-value=2.3e-19 Score=135.05 Aligned_cols=58 Identities=19% Similarity=0.330 Sum_probs=47.7
Q ss_pred cccccccCCCCCCCCCCHHHHHHHHHHHHhhCCchhhhhccCCCCCHHHHHHHHHHHhh
Q 036215 68 LRWMNYLRPSIKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTRLR 126 (289)
Q Consensus 68 ~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~~lr 126 (289)
-||.++|+|.+++++||+|||++|++++.+||++|+.||+.| |||+++||+||+.+.+
T Consensus 11 ~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~~ 68 (73)
T 2llk_A 11 RENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMKD 68 (73)
T ss_dssp --------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCSC
T ss_pred cceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999999 9999999999986543
No 11
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.75 E-value=4.2e-19 Score=159.77 Aligned_cols=105 Identities=18% Similarity=0.294 Sum_probs=92.7
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCCCC-----cceeccccCcccCccccccccccccCCCCC------------------
Q 036215 23 VGIKKGPWTPEEDEILSNYIKREGEGQ-----WRTLPKRAGLLRCGKSCRLRWMNYLRPSIK------------------ 79 (289)
Q Consensus 23 ~~lkkg~WT~EEDe~L~~~V~~~g~~~-----W~~IA~~~~~~Rt~kqCr~Rw~n~L~p~lk------------------ 79 (289)
..++|++||+|||++|+++|.++|..+ |..||+.|++ ||+.||+.||+.+|.+.+.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpG-RT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn 82 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPN-HTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGN 82 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTT-SCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCC-CCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCC
Confidence 468899999999999999999998643 9999999997 9999999999999999997
Q ss_pred -----------CCCCCHHHHHHHHHHHHh-h-------------------------------------------------
Q 036215 80 -----------RGHIAPDEEDLILRLHRL-L------------------------------------------------- 98 (289)
Q Consensus 80 -----------rg~WT~EED~~Ll~lv~~-~------------------------------------------------- 98 (289)
+..||.|||-.|+..+.+ +
T Consensus 83 ~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 162 (246)
T 1ign_A 83 LIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRT 162 (246)
T ss_dssp BCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CC
T ss_pred ceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhcc
Confidence 899999999999999977 1
Q ss_pred ----CC----chhhhhccCCCCCHHHHHHHHHHHhhhh
Q 036215 99 ----GN----RWSLIAGRIPGRTDNEIKNYWNTRLRKK 128 (289)
Q Consensus 99 ----G~----kWs~IA~~lpgRT~~q~knRW~~~lrk~ 128 (289)
|. .|..||+.+|+||.+.+|+||+.+|+..
T Consensus 163 ~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 163 QSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred ccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 11 6999999999999999999999998874
No 12
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.72 E-value=1.6e-18 Score=142.07 Aligned_cols=83 Identities=23% Similarity=0.386 Sum_probs=77.7
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCcceecccc----CcccCccccccccccccC-----CCCCCC-CCCHHHHHH
Q 036215 21 SKVGIKKGPWTPEEDEILSNYIKREGEGQWRTLPKRA----GLLRCGKSCRLRWMNYLR-----PSIKRG-HIAPDEEDL 90 (289)
Q Consensus 21 ~k~~lkkg~WT~EEDe~L~~~V~~~g~~~W~~IA~~~----~~~Rt~kqCr~Rw~n~L~-----p~lkrg-~WT~EED~~ 90 (289)
.++..++++||+|||+.|+++|.+||.++|..|+..+ ++ ||+.+|++||+++|+ |.++++ +|++||+..
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~-RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~r 89 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADH-RTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDR 89 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSS-CCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCC-CCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHH
Confidence 3568899999999999999999999999999999985 44 999999999999998 999999 999999999
Q ss_pred HHHHHHhhCCchhh
Q 036215 91 ILRLHRLLGNRWSL 104 (289)
Q Consensus 91 Ll~lv~~~G~kWs~ 104 (289)
|++++..||++|++
T Consensus 90 v~~~h~~~gn~~~~ 103 (121)
T 2juh_A 90 VLAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHccchhc
Confidence 99999999999987
No 13
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=6.5e-18 Score=124.15 Aligned_cols=60 Identities=27% Similarity=0.346 Sum_probs=57.1
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHhhCCchhhhhccCCCCCHHHHHHHHHHHhhhhhhhCC
Q 036215 73 YLRPSIKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTRLRKKLISQG 133 (289)
Q Consensus 73 ~L~p~lkrg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~~lrk~~~~~~ 133 (289)
+|+|.+++++||+|||++|++++.+||++|..||. |+|||++|||+||+.+|++.+.+..
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence 79999999999999999999999999999999999 9999999999999999999877654
No 14
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=5.5e-18 Score=125.92 Aligned_cols=65 Identities=20% Similarity=0.291 Sum_probs=62.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhC-CchhhhhccCCCCCHHHHHHHHHHHhhhhhhhCCCCCCCC
Q 036215 75 RPSIKRGHIAPDEEDLILRLHRLLG-NRWSLIAGRIPGRTDNEIKNYWNTRLRKKLISQGINPTTH 139 (289)
Q Consensus 75 ~p~lkrg~WT~EED~~Ll~lv~~~G-~kWs~IA~~lpgRT~~q~knRW~~~lrk~~~~~~~~~~~~ 139 (289)
.|.+++++||+|||++|+++|.+|| ++|..||..|+|||+.||++||+++|++.+.+++|+++++
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 5778999999999999999999999 7999999999999999999999999999999999998875
No 15
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.72 E-value=7.3e-18 Score=126.04 Aligned_cols=64 Identities=23% Similarity=0.302 Sum_probs=58.2
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHhhCCchhhhhccCCCCCHHHHHHHHHHHhhhhhhhCCCCCCC
Q 036215 74 LRPSIKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTRLRKKLISQGINPTT 138 (289)
Q Consensus 74 L~p~lkrg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~~lrk~~~~~~~~~~~ 138 (289)
++|.+++++||+|||++|+++|.+||++|..||+.|||||++|||+||+.++++.+.. ++.+++
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~-g~~~~~ 66 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC-GLDKET 66 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS-CTTCCC
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc-CCCCCc
Confidence 5789999999999999999999999999999999999999999999999999987655 555443
No 16
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.71 E-value=5.6e-18 Score=138.98 Aligned_cols=80 Identities=25% Similarity=0.392 Sum_probs=73.9
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCcceecccc----CcccCcccccccccccc-----CCCCCCCCCCHHH-HHH
Q 036215 21 SKVGIKKGPWTPEEDEILSNYIKREGEGQWRTLPKRA----GLLRCGKSCRLRWMNYL-----RPSIKRGHIAPDE-EDL 90 (289)
Q Consensus 21 ~k~~lkkg~WT~EEDe~L~~~V~~~g~~~W~~IA~~~----~~~Rt~kqCr~Rw~n~L-----~p~lkrg~WT~EE-D~~ 90 (289)
.+...++++||+|||+.|+++|++||.++|..|+..+ .+ |++.+|++||+|++ +|.++++.|++|| +..
T Consensus 25 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~-RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~ 103 (122)
T 2roh_A 25 FGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHH-RTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDR 103 (122)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCC-CCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHH
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCC-CCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHH
Confidence 3567889999999999999999999999999999864 44 99999999999999 8999999999999 899
Q ss_pred HHHHHHhhCCc
Q 036215 91 ILRLHRLLGNR 101 (289)
Q Consensus 91 Ll~lv~~~G~k 101 (289)
|++++..||++
T Consensus 104 v~~~h~~~g~~ 114 (122)
T 2roh_A 104 VLAAQAYWSVD 114 (122)
T ss_dssp HHHHHHHHHSS
T ss_pred HHHHHHHHhhH
Confidence 99999999985
No 17
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=9.1e-18 Score=121.04 Aligned_cols=57 Identities=28% Similarity=0.536 Sum_probs=53.9
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCcceeccccCcccCccccccccccccCCCCC
Q 036215 22 KVGIKKGPWTPEEDEILSNYIKREGEGQWRTLPKRAGLLRCGKSCRLRWMNYLRPSIK 79 (289)
Q Consensus 22 k~~lkkg~WT~EEDe~L~~~V~~~g~~~W~~IA~~~~~~Rt~kqCr~Rw~n~L~p~lk 79 (289)
.+.+++++||+|||++|+++|.+||.++|..||..|++ |++.||++||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPN-RTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSS-SCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccC-CCHHHHHHHHHHHcCCccC
Confidence 46889999999999999999999998899999999987 9999999999999999875
No 18
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.68 E-value=1e-17 Score=117.52 Aligned_cols=52 Identities=42% Similarity=0.846 Sum_probs=49.5
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCcceeccccCcccCccccccccccccCCC
Q 036215 25 IKKGPWTPEEDEILSNYIKREGEGQWRTLPKRAGLLRCGKSCRLRWMNYLRPS 77 (289)
Q Consensus 25 lkkg~WT~EEDe~L~~~V~~~g~~~W~~IA~~~~~~Rt~kqCr~Rw~n~L~p~ 77 (289)
++||+||+|||++|+++|.+||..+|..||..|++ |+++||++||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTT-CCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCC-CCHHHHHHHHHHHcCcC
Confidence 58999999999999999999998789999999987 99999999999999985
No 19
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.67 E-value=4e-17 Score=117.69 Aligned_cols=55 Identities=24% Similarity=0.434 Sum_probs=51.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhC-CchhhhhccCCCCCHHHHHHHHHHHhhhhh
Q 036215 75 RPSIKRGHIAPDEEDLILRLHRLLG-NRWSLIAGRIPGRTDNEIKNYWNTRLRKKL 129 (289)
Q Consensus 75 ~p~lkrg~WT~EED~~Ll~lv~~~G-~kWs~IA~~lpgRT~~q~knRW~~~lrk~~ 129 (289)
+|.+++++||+|||++|+++|.+|| ++|..||..|||||+.||++||+++|++.+
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i 58 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPS 58 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCcc
Confidence 5789999999999999999999999 699999999999999999999999998754
No 20
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.65 E-value=1.7e-17 Score=116.29 Aligned_cols=52 Identities=31% Similarity=0.693 Sum_probs=48.2
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCcceeccccCcccCccccccccccccCCC
Q 036215 25 IKKGPWTPEEDEILSNYIKREGEGQWRTLPKRAGLLRCGKSCRLRWMNYLRPS 77 (289)
Q Consensus 25 lkkg~WT~EEDe~L~~~V~~~g~~~W~~IA~~~~~~Rt~kqCr~Rw~n~L~p~ 77 (289)
+++|+||+|||++|+++|.+||.++|..||+.|++ |++.||++||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN-RTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTT-CCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCC-CCHHHHHHHHHHHcCcC
Confidence 57899999999999999999998899999999987 99999999999999985
No 21
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.65 E-value=1.2e-16 Score=111.91 Aligned_cols=50 Identities=24% Similarity=0.529 Sum_probs=46.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCC-chhhhhccCCCCCHHHHHHHHHHHhhh
Q 036215 78 IKRGHIAPDEEDLILRLHRLLGN-RWSLIAGRIPGRTDNEIKNYWNTRLRK 127 (289)
Q Consensus 78 lkrg~WT~EED~~Ll~lv~~~G~-kWs~IA~~lpgRT~~q~knRW~~~lrk 127 (289)
+++++||+|||++|+++|.+||. +|..||+.|||||+.||++||+++|++
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 57899999999999999999998 999999999999999999999999875
No 22
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.64 E-value=3e-17 Score=121.64 Aligned_cols=62 Identities=21% Similarity=0.351 Sum_probs=57.6
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCcceeccccC--cccCccccccccccccCCCCCCCCCC
Q 036215 22 KVGIKKGPWTPEEDEILSNYIKREGEGQWRTLPKRAG--LLRCGKSCRLRWMNYLRPSIKRGHIA 84 (289)
Q Consensus 22 k~~lkkg~WT~EEDe~L~~~V~~~g~~~W~~IA~~~~--~~Rt~kqCr~Rw~n~L~p~lkrg~WT 84 (289)
++..++++||+|||++|+++|.+||.++|..||..|+ + |++.||++||.++|+|.+.++..+
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~-Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNN-RTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSS-CCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCC-CCHHHHHHHHHHHcCCCCCCCCCC
Confidence 4567899999999999999999999889999999998 6 999999999999999999988764
No 23
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.64 E-value=2.3e-16 Score=110.56 Aligned_cols=50 Identities=26% Similarity=0.636 Sum_probs=47.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCC-chhhhhccCCCCCHHHHHHHHHHHhhh
Q 036215 78 IKRGHIAPDEEDLILRLHRLLGN-RWSLIAGRIPGRTDNEIKNYWNTRLRK 127 (289)
Q Consensus 78 lkrg~WT~EED~~Ll~lv~~~G~-kWs~IA~~lpgRT~~q~knRW~~~lrk 127 (289)
+++++||+|||++|+++|.+||. +|..||..|+|||+.||++||+++|++
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 57899999999999999999997 699999999999999999999999875
No 24
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.64 E-value=2.7e-16 Score=116.53 Aligned_cols=62 Identities=27% Similarity=0.271 Sum_probs=56.3
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHhhC-CchhhhhccCC--CCCHHHHHHHHHHHhhhhhhhCCC
Q 036215 73 YLRPSIKRGHIAPDEEDLILRLHRLLG-NRWSLIAGRIP--GRTDNEIKNYWNTRLRKKLISQGI 134 (289)
Q Consensus 73 ~L~p~lkrg~WT~EED~~Ll~lv~~~G-~kWs~IA~~lp--gRT~~q~knRW~~~lrk~~~~~~~ 134 (289)
...|..++++||+|||++|+++|.+|| ++|..||..|+ |||+.||++||+++|++.+.+...
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~ 67 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDS 67 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCC
Confidence 356778999999999999999999999 69999999999 999999999999999998766543
No 25
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.61 E-value=5.6e-16 Score=109.11 Aligned_cols=49 Identities=27% Similarity=0.305 Sum_probs=46.6
Q ss_pred CCCCCCHHHHHHHHHHHHhhC-CchhhhhccCC--CCCHHHHHHHHHHHhhh
Q 036215 79 KRGHIAPDEEDLILRLHRLLG-NRWSLIAGRIP--GRTDNEIKNYWNTRLRK 127 (289)
Q Consensus 79 krg~WT~EED~~Ll~lv~~~G-~kWs~IA~~lp--gRT~~q~knRW~~~lrk 127 (289)
++++||+|||++|+++|.+|| ++|..||..|| |||+.||++||+++++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 478999999999999999999 69999999999 99999999999999875
No 26
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.60 E-value=7.9e-16 Score=111.13 Aligned_cols=53 Identities=17% Similarity=0.181 Sum_probs=49.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhC-CchhhhhccCCCCCHHHHHHHHHHHhhh
Q 036215 75 RPSIKRGHIAPDEEDLILRLHRLLG-NRWSLIAGRIPGRTDNEIKNYWNTRLRK 127 (289)
Q Consensus 75 ~p~lkrg~WT~EED~~Ll~lv~~~G-~kWs~IA~~lpgRT~~q~knRW~~~lrk 127 (289)
.+.+.+++||+|||++|+++|.+|| ++|..||+.|||||+.||++||+.+|..
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 4678999999999999999999999 7999999999999999999999988864
No 27
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.60 E-value=1.3e-16 Score=116.93 Aligned_cols=56 Identities=29% Similarity=0.480 Sum_probs=49.3
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCcceeccccC-cccCccccccccccccCCCCC
Q 036215 24 GIKKGPWTPEEDEILSNYIKREGEGQWRTLPKRAG-LLRCGKSCRLRWMNYLRPSIK 79 (289)
Q Consensus 24 ~lkkg~WT~EEDe~L~~~V~~~g~~~W~~IA~~~~-~~Rt~kqCr~Rw~n~L~p~lk 79 (289)
..+|++||+|||++|+++|.+||.++|..||+.++ .+|++.||++||+++++|.++
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 35788999999999999999999989999999865 239999999999999998874
No 28
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.57 E-value=4.1e-16 Score=112.65 Aligned_cols=54 Identities=19% Similarity=0.441 Sum_probs=50.8
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCCCCcceeccccCcccCccccccccccccCCC
Q 036215 23 VGIKKGPWTPEEDEILSNYIKREGEGQWRTLPKRAGLLRCGKSCRLRWMNYLRPS 77 (289)
Q Consensus 23 ~~lkkg~WT~EEDe~L~~~V~~~g~~~W~~IA~~~~~~Rt~kqCr~Rw~n~L~p~ 77 (289)
+.+++++||+|||++|+++|.+||.++|..||+.|++ |+++||++||.++|.+.
T Consensus 4 ~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCT-KTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTT-SCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCC-CCHHHHHHHHHHHccCC
Confidence 4788999999999999999999998899999999988 99999999999999765
No 29
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=2.1e-15 Score=113.29 Aligned_cols=57 Identities=18% Similarity=0.164 Sum_probs=52.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhC------CchhhhhccCCCCCHHHHHHHHHHHhhhhhhh
Q 036215 75 RPSIKRGHIAPDEEDLILRLHRLLG------NRWSLIAGRIPGRTDNEIKNYWNTRLRKKLIS 131 (289)
Q Consensus 75 ~p~lkrg~WT~EED~~Ll~lv~~~G------~kWs~IA~~lpgRT~~q~knRW~~~lrk~~~~ 131 (289)
+|.+.+++||+|||++|++++.+|| .+|..||..|+|||+.||++||+.+|++.+..
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~ 65 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKA 65 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999 78999999999999999999999999876543
No 30
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.56 E-value=3.1e-15 Score=109.66 Aligned_cols=52 Identities=25% Similarity=0.415 Sum_probs=47.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhhC-CchhhhhccCC--CCCHHHHHHHHHHHhhhhh
Q 036215 78 IKRGHIAPDEEDLILRLHRLLG-NRWSLIAGRIP--GRTDNEIKNYWNTRLRKKL 129 (289)
Q Consensus 78 lkrg~WT~EED~~Ll~lv~~~G-~kWs~IA~~lp--gRT~~q~knRW~~~lrk~~ 129 (289)
.++++||+|||++|+++|.+|| .+|..||+.+| |||+.||++||++++++.+
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence 5789999999999999999999 58999999865 9999999999999988653
No 31
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.31 E-value=4e-16 Score=121.39 Aligned_cols=57 Identities=18% Similarity=0.184 Sum_probs=54.0
Q ss_pred cccCCCCCCCCCCHHHHHHHHHHHHhhCCchhhhhccCCCCCHHHHHHHHHHHhhhh
Q 036215 72 NYLRPSIKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTRLRKK 128 (289)
Q Consensus 72 n~L~p~lkrg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~~lrk~ 128 (289)
..++|.+++++||+|||++|+++|.+||++|..||..|||||+++|++||+.++++.
T Consensus 8 ~~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 8 SSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 357889999999999999999999999999999999999999999999999999875
No 32
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.54 E-value=1.8e-15 Score=120.14 Aligned_cols=72 Identities=18% Similarity=0.429 Sum_probs=66.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCC-chhhhhccCCCCCHHHHHHHHHHHhhhhhhhCCCCCCCCccccccccc
Q 036215 77 SIKRGHIAPDEEDLILRLHRLLGN-RWSLIAGRIPGRTDNEIKNYWNTRLRKKLISQGINPTTHKPLIFNQVV 148 (289)
Q Consensus 77 ~lkrg~WT~EED~~Ll~lv~~~G~-kWs~IA~~lpgRT~~q~knRW~~~lrk~~~~~~~~~~~~k~l~~~~~~ 148 (289)
++++++||+|||++|+++|.+||. +|..||..|||||+.||+.||..+|.+.+.+++|+++++..|......
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~ 73 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKR 73 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHH
Confidence 378999999999999999999996 799999999999999999999999999999999999999887765443
No 33
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.54 E-value=2.4e-15 Score=123.54 Aligned_cols=75 Identities=17% Similarity=0.374 Sum_probs=68.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhCCchhhhhccCCCCCHHHHHHHHHHHhhhhhhhCCCCCCCCcccccccccc
Q 036215 75 RPSIKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTRLRKKLISQGINPTTHKPLIFNQVVH 149 (289)
Q Consensus 75 ~p~lkrg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~~lrk~~~~~~~~~~~~k~l~~~~~~~ 149 (289)
.+..++++||+|||++|+++|.+||.+|..||..||||+..||+.||+++|.+.+.+++|+++++..|.......
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~ 80 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEY 80 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHH
Confidence 456889999999999999999999999999999999999999999999999999999999999998887665443
No 34
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.54 E-value=8.8e-16 Score=108.08 Aligned_cols=49 Identities=27% Similarity=0.484 Sum_probs=46.3
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCcceeccccC--cccCccccccccccccC
Q 036215 26 KKGPWTPEEDEILSNYIKREGEGQWRTLPKRAG--LLRCGKSCRLRWMNYLR 75 (289)
Q Consensus 26 kkg~WT~EEDe~L~~~V~~~g~~~W~~IA~~~~--~~Rt~kqCr~Rw~n~L~ 75 (289)
++|+||+|||++|+++|.+||.++|..||..++ + |++.||++||.+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~-Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNN-RTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSS-CCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCC-CCHHHHHHHHHHHHc
Confidence 589999999999999999999889999999998 6 999999999999875
No 35
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.53 E-value=9.5e-15 Score=104.86 Aligned_cols=51 Identities=25% Similarity=0.333 Sum_probs=46.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhC-CchhhhhccCC-CCCHHHHHHHHHHHh
Q 036215 75 RPSIKRGHIAPDEEDLILRLHRLLG-NRWSLIAGRIP-GRTDNEIKNYWNTRL 125 (289)
Q Consensus 75 ~p~lkrg~WT~EED~~Ll~lv~~~G-~kWs~IA~~lp-gRT~~q~knRW~~~l 125 (289)
+..+.+++||+|||++|+++|.+|| .+|..||+.|+ |||+.||++||.+++
T Consensus 4 ~~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 4 GSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 3457789999999999999999999 89999999999 999999999998764
No 36
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=9.2e-16 Score=115.22 Aligned_cols=61 Identities=21% Similarity=0.316 Sum_probs=55.7
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCC-----CCcceeccccCcccCccccccccccccCCCCCCCC
Q 036215 21 SKVGIKKGPWTPEEDEILSNYIKREGE-----GQWRTLPKRAGLLRCGKSCRLRWMNYLRPSIKRGH 82 (289)
Q Consensus 21 ~k~~lkkg~WT~EEDe~L~~~V~~~g~-----~~W~~IA~~~~~~Rt~kqCr~Rw~n~L~p~lkrg~ 82 (289)
+++.+++++||+|||++|+++|.+||. .+|..||+.|++ |++.||+.||.+||.+.++.|-
T Consensus 2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~-Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGN-RTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSS-SCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhcCC
Confidence 367899999999999999999999996 689999999998 9999999999999998777654
No 37
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=5.1e-16 Score=113.94 Aligned_cols=58 Identities=29% Similarity=0.368 Sum_probs=53.0
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCcceeccccCcccCccccccccccccCCCCCCC
Q 036215 21 SKVGIKKGPWTPEEDEILSNYIKREGEGQWRTLPKRAGLLRCGKSCRLRWMNYLRPSIKRG 81 (289)
Q Consensus 21 ~k~~lkkg~WT~EEDe~L~~~V~~~g~~~W~~IA~~~~~~Rt~kqCr~Rw~n~L~p~lkrg 81 (289)
..|.+++++||+|||++|+++|..+|. +|..||+ +++ |+++||++||.++|+|.++++
T Consensus 3 L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~g-Rt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 3 SGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-IIG-RTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp CSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HHS-SCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-ccC-cCHHHHHHHHHHHhChHhcCC
Confidence 367899999999999999999999997 9999999 766 999999999999999877654
No 38
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.51 E-value=2.4e-15 Score=107.97 Aligned_cols=52 Identities=19% Similarity=0.413 Sum_probs=47.3
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCCCCcceeccccCcccCcccccccccccc
Q 036215 23 VGIKKGPWTPEEDEILSNYIKREGEGQWRTLPKRAGLLRCGKSCRLRWMNYL 74 (289)
Q Consensus 23 ~~lkkg~WT~EEDe~L~~~V~~~g~~~W~~IA~~~~~~Rt~kqCr~Rw~n~L 74 (289)
..+.+++||+|||++|+++|.+||.++|..||+.|+++|+++||++||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 3577889999999999999999998899999999993399999999999865
No 39
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.48 E-value=1e-14 Score=116.49 Aligned_cols=69 Identities=16% Similarity=0.235 Sum_probs=63.6
Q ss_pred CCCCCHHHHHHHHHHHHhhCC-chhhhhccCCCCCHHHHHHHHHHHhhhhhhhCCCCCCCCccccccccc
Q 036215 80 RGHIAPDEEDLILRLHRLLGN-RWSLIAGRIPGRTDNEIKNYWNTRLRKKLISQGINPTTHKPLIFNQVV 148 (289)
Q Consensus 80 rg~WT~EED~~Ll~lv~~~G~-kWs~IA~~lpgRT~~q~knRW~~~lrk~~~~~~~~~~~~k~l~~~~~~ 148 (289)
+++||+|||++|+++|.+||. +|..||..|||||+.||+.||.++|.+.+.+++|+++++..|......
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~ 70 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAE 70 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHH
Confidence 589999999999999999996 899999999999999999999999999999999999999877665443
No 40
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.46 E-value=2e-14 Score=118.67 Aligned_cols=71 Identities=20% Similarity=0.437 Sum_probs=65.5
Q ss_pred CCCCCHHHHHHHHHHHHhhC-CchhhhhccCCCCCHHHHHHHHHHHhhhhhhhCCCCCCCCccccccccccc
Q 036215 80 RGHIAPDEEDLILRLHRLLG-NRWSLIAGRIPGRTDNEIKNYWNTRLRKKLISQGINPTTHKPLIFNQVVHD 150 (289)
Q Consensus 80 rg~WT~EED~~Ll~lv~~~G-~kWs~IA~~lpgRT~~q~knRW~~~lrk~~~~~~~~~~~~k~l~~~~~~~~ 150 (289)
+|+||+|||++|+++|.+|| .+|..||..|||||..||+.||.++|.+.+.++.|+++++..|........
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G 73 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLG 73 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHC
Confidence 68999999999999999999 689999999999999999999999999999999999999988877655443
No 41
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.46 E-value=6.5e-15 Score=109.93 Aligned_cols=58 Identities=22% Similarity=0.334 Sum_probs=53.3
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCcceeccccCcccCccccccccccccCCCCCC
Q 036215 21 SKVGIKKGPWTPEEDEILSNYIKREGEGQWRTLPKRAGLLRCGKSCRLRWMNYLRPSIKR 80 (289)
Q Consensus 21 ~k~~lkkg~WT~EEDe~L~~~V~~~g~~~W~~IA~~~~~~Rt~kqCr~Rw~n~L~p~lkr 80 (289)
..|.+++++||+|||++|+++|.+||. +|..||+.|++ |++.||+.||.++|.+.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~-Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIGS-RTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSS-SCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCC-CCHHHHHHHHHHHHHHHHhc
Confidence 356889999999999999999999997 99999999988 99999999999999876665
No 42
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.45 E-value=8.3e-14 Score=104.64 Aligned_cols=51 Identities=10% Similarity=0.205 Sum_probs=47.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhC----CchhhhhccCCCCCHHHHHHHHHHHhh
Q 036215 76 PSIKRGHIAPDEEDLILRLHRLLG----NRWSLIAGRIPGRTDNEIKNYWNTRLR 126 (289)
Q Consensus 76 p~lkrg~WT~EED~~Ll~lv~~~G----~kWs~IA~~lpgRT~~q~knRW~~~lr 126 (289)
+.+.+++||+|||.+|++++.+|| ++|.+||..|||||.++|++||+.+++
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 457889999999999999999999 689999999999999999999998875
No 43
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.43 E-value=5.3e-14 Score=112.61 Aligned_cols=79 Identities=23% Similarity=0.339 Sum_probs=68.6
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCcceeccccC---cccCcccccccccccc-----CCCCCCCCCCHHHHHH-HH
Q 036215 22 KVGIKKGPWTPEEDEILSNYIKREGEGQWRTLPKRAG---LLRCGKSCRLRWMNYL-----RPSIKRGHIAPDEEDL-IL 92 (289)
Q Consensus 22 k~~lkkg~WT~EEDe~L~~~V~~~g~~~W~~IA~~~~---~~Rt~kqCr~Rw~n~L-----~p~lkrg~WT~EED~~-Ll 92 (289)
+...++++||+|||+.|+++|.+||.++|..|+..+. .+||+.+|++||++++ +|.++++.-+|+|-.. ++
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv~ 87 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRVL 87 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHHH
Confidence 4678899999999999999999999999999999762 3499999999999998 7999999999888766 78
Q ss_pred HHHHhhCC
Q 036215 93 RLHRLLGN 100 (289)
Q Consensus 93 ~lv~~~G~ 100 (289)
+|+..+|+
T Consensus 88 ~~~~~~~~ 95 (105)
T 2aje_A 88 NAHGYWTQ 95 (105)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877664
No 44
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.40 E-value=7.4e-14 Score=106.38 Aligned_cols=56 Identities=21% Similarity=0.360 Sum_probs=50.9
Q ss_pred CCCccCCCCCccCCCCHHHHHHHHHHHHHhCCCCcceeccccCcccCccccccccccc
Q 036215 16 ITPCCSKVGIKKGPWTPEEDEILSNYIKREGEGQWRTLPKRAGLLRCGKSCRLRWMNY 73 (289)
Q Consensus 16 ~~~c~~k~~lkkg~WT~EEDe~L~~~V~~~g~~~W~~IA~~~~~~Rt~kqCr~Rw~n~ 73 (289)
+...+.+....+++||+|||++|+++|.+|| ++|..||+.|++ |++.||+.||.++
T Consensus 7 ~~~~~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~-RT~~qcr~r~~~~ 62 (79)
T 2yus_A 7 GTLAKSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGS-RTQDECILHFLRL 62 (79)
T ss_dssp CCCCCCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSS-CCHHHHHHHHTTS
T ss_pred CccCCccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCC-CCHHHHHHHHHHh
Confidence 3445567788899999999999999999999 799999999997 9999999999997
No 45
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.39 E-value=4.3e-13 Score=97.35 Aligned_cols=50 Identities=16% Similarity=0.325 Sum_probs=46.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCchhhhh---ccCCCCCHHHHHHHHHHHhhh
Q 036215 78 IKRGHIAPDEEDLILRLHRLLGNRWSLIA---GRIPGRTDNEIKNYWNTRLRK 127 (289)
Q Consensus 78 lkrg~WT~EED~~Ll~lv~~~G~kWs~IA---~~lpgRT~~q~knRW~~~lrk 127 (289)
-++.+||+|||+.|+++|++||.+|..|+ .+|++||..++|+||+++.|+
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 46889999999999999999999999999 678999999999999998875
No 46
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.38 E-value=1.4e-13 Score=105.82 Aligned_cols=69 Identities=28% Similarity=0.501 Sum_probs=59.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcceeccc----cCcccCcccccccccccc-----CCCCCCC-CCCHHHHHHHHHHHHh
Q 036215 28 GPWTPEEDEILSNYIKREGEGQWRTLPKR----AGLLRCGKSCRLRWMNYL-----RPSIKRG-HIAPDEEDLILRLHRL 97 (289)
Q Consensus 28 g~WT~EEDe~L~~~V~~~g~~~W~~IA~~----~~~~Rt~kqCr~Rw~n~L-----~p~lkrg-~WT~EED~~Ll~lv~~ 97 (289)
++||+|||+.|+++|.+||.++|..|++. +++ ||+.+|++||+++| +|.++++ +..++....++.++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~-RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADH-RTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTT-SCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCC-CCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 48999999999999999999999999985 665 99999999999988 6776665 6667777888888753
No 47
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.37 E-value=3.2e-13 Score=121.61 Aligned_cols=71 Identities=23% Similarity=0.347 Sum_probs=59.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCc------hhhhhccCCCCCHHHHHHHHHHHhhhhhhhCCCCCCCCcccccccc
Q 036215 76 PSIKRGHIAPDEEDLILRLHRLLGNR------WSLIAGRIPGRTDNEIKNYWNTRLRKKLISQGINPTTHKPLIFNQV 147 (289)
Q Consensus 76 p~lkrg~WT~EED~~Ll~lv~~~G~k------Ws~IA~~lpgRT~~q~knRW~~~lrk~~~~~~~~~~~~k~l~~~~~ 147 (289)
+.+++++||+|||++|+++|++||++ |..||+.|||||+++||+||+.+|++++. ..|...++..|.....
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln-~vy~~ded~~Li~d~~ 80 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE-YVYEVDKFGKLVRDDD 80 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC-CEECBCTTSCBCBCTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc-cccccCcchhhhhccC
Confidence 35789999999999999999999985 99999999999999999999999999877 3477777766655544
No 48
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.36 E-value=1.5e-13 Score=103.29 Aligned_cols=56 Identities=23% Similarity=0.300 Sum_probs=48.1
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCcceeccccCcccCccccccccccccCCCCCC
Q 036215 21 SKVGIKKGPWTPEEDEILSNYIKREGEGQWRTLPKRAGLLRCGKSCRLRWMNYLRPSIKR 80 (289)
Q Consensus 21 ~k~~lkkg~WT~EEDe~L~~~V~~~g~~~W~~IA~~~~~~Rt~kqCr~Rw~n~L~p~lkr 80 (289)
..|.+++|+||+|||++|+++|.+||. .|..||+.| + |++.||+.||.. |....+.
T Consensus 17 ldP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l-g-Rt~~q~knRw~~-L~~~~~~ 72 (73)
T 2llk_A 17 QGDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL-G-RSASSVKDRCRL-MKDTCNT 72 (73)
T ss_dssp --CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH-T-SCHHHHHHHHHH-CSCCCSC
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh-C-CCHHHHHHHHHH-HHHHccC
Confidence 378999999999999999999999997 699999999 5 999999999974 5544443
No 49
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.36 E-value=3.1e-13 Score=102.98 Aligned_cols=48 Identities=15% Similarity=0.215 Sum_probs=45.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCchhhhhccCCCCCHHHHHHHHHHH
Q 036215 77 SIKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTR 124 (289)
Q Consensus 77 ~lkrg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~~ 124 (289)
...+++||+|||++|++++.+||.+|.+||++|++||+.||++||..+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456889999999999999999999999999999999999999999755
No 50
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.35 E-value=8.7e-13 Score=101.40 Aligned_cols=48 Identities=23% Similarity=0.394 Sum_probs=45.0
Q ss_pred CCCCHHHHHHHHHHHHhhCC-chhhhhcc----CCCCCHHHHHHHHHHHhhhh
Q 036215 81 GHIAPDEEDLILRLHRLLGN-RWSLIAGR----IPGRTDNEIKNYWNTRLRKK 128 (289)
Q Consensus 81 g~WT~EED~~Ll~lv~~~G~-kWs~IA~~----lpgRT~~q~knRW~~~lrk~ 128 (289)
.+||+|||++|+++|.+||. +|+.|++. |+|||+++||+||+++++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~ 53 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 53 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999999997 99999985 89999999999999999865
No 51
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.35 E-value=2.2e-13 Score=111.57 Aligned_cols=55 Identities=24% Similarity=0.366 Sum_probs=50.7
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHhhCC-chhhhhcc----CCCCCHHHHHHHHHHHhhhh
Q 036215 74 LRPSIKRGHIAPDEEDLILRLHRLLGN-RWSLIAGR----IPGRTDNEIKNYWNTRLRKK 128 (289)
Q Consensus 74 L~p~lkrg~WT~EED~~Ll~lv~~~G~-kWs~IA~~----lpgRT~~q~knRW~~~lrk~ 128 (289)
+.+..++++||+|||++|+++|.+||. +|+.|++. |+|||+.+||+||+++++..
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~ 70 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 70 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence 566789999999999999999999997 99999998 49999999999999999853
No 52
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.33 E-value=2.4e-12 Score=103.04 Aligned_cols=54 Identities=20% Similarity=0.302 Sum_probs=48.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhCC-chhhhhccC----CCCCHHHHHHHHHHHhhhh
Q 036215 75 RPSIKRGHIAPDEEDLILRLHRLLGN-RWSLIAGRI----PGRTDNEIKNYWNTRLRKK 128 (289)
Q Consensus 75 ~p~lkrg~WT~EED~~Ll~lv~~~G~-kWs~IA~~l----pgRT~~q~knRW~~~lrk~ 128 (289)
.+..++++||+|||++|+++|.+||. +|+.|++.+ +|||+.+||+||+++++..
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~ 66 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA 66 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 34678999999999999999999997 999999965 8999999999999999864
No 53
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.28 E-value=2.5e-12 Score=105.37 Aligned_cols=54 Identities=24% Similarity=0.383 Sum_probs=48.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhCC-chhhhhcc----CCCCCHHHHHHHHHHHhhhh
Q 036215 75 RPSIKRGHIAPDEEDLILRLHRLLGN-RWSLIAGR----IPGRTDNEIKNYWNTRLRKK 128 (289)
Q Consensus 75 ~p~lkrg~WT~EED~~Ll~lv~~~G~-kWs~IA~~----lpgRT~~q~knRW~~~lrk~ 128 (289)
....++++||+|||+.|+++|++||. +|+.|++. |+|||+.+||+||+++++..
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 34567899999999999999999997 99999986 49999999999999999753
No 54
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.92 E-value=4.2e-13 Score=104.23 Aligned_cols=53 Identities=19% Similarity=0.425 Sum_probs=49.4
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCcceeccccCcccCccccccccccccCC
Q 036215 22 KVGIKKGPWTPEEDEILSNYIKREGEGQWRTLPKRAGLLRCGKSCRLRWMNYLRP 76 (289)
Q Consensus 22 k~~lkkg~WT~EEDe~L~~~V~~~g~~~W~~IA~~~~~~Rt~kqCr~Rw~n~L~p 76 (289)
.+.+++|+||+|||++|+++|.+||. +|..||..|++ |++.||+.||.++|..
T Consensus 11 ~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~g-Rt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 11 RENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVGS-KTVSQCKNFYFNYKKR 63 (89)
Confidence 46889999999999999999999997 89999999987 9999999999998864
No 55
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.26 E-value=1.1e-12 Score=98.57 Aligned_cols=57 Identities=12% Similarity=0.320 Sum_probs=50.9
Q ss_pred CccCCCCCccCCCCHHHHHHHHHHHHHhCC---CCcceeccccCcccCccccccccccccC
Q 036215 18 PCCSKVGIKKGPWTPEEDEILSNYIKREGE---GQWRTLPKRAGLLRCGKSCRLRWMNYLR 75 (289)
Q Consensus 18 ~c~~k~~lkkg~WT~EEDe~L~~~V~~~g~---~~W~~IA~~~~~~Rt~kqCr~Rw~n~L~ 75 (289)
+-..++...+++||+|||++|+++|.+||. .+|..||+.|++ |+.+||+.||.+++.
T Consensus 9 ~~~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpG-RT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 9 LRKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPS-KSKEDCIARYKLLVS 68 (73)
T ss_dssp CCCCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSS-SCHHHHHHHHHHHHS
T ss_pred ccccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 345677889999999999999999999993 489999999997 999999999998764
No 56
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.24 E-value=6.6e-12 Score=98.41 Aligned_cols=50 Identities=20% Similarity=0.355 Sum_probs=45.7
Q ss_pred CCCCCCHHHHHHHHHHHHhhC----CchhhhhccCCCCCHHHHHHHHHHHhhhh
Q 036215 79 KRGHIAPDEEDLILRLHRLLG----NRWSLIAGRIPGRTDNEIKNYWNTRLRKK 128 (289)
Q Consensus 79 krg~WT~EED~~Ll~lv~~~G----~kWs~IA~~lpgRT~~q~knRW~~~lrk~ 128 (289)
.+++||+|||++|++++.+|| ++|.+||..|||||.++|++||+.++...
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 467999999999999999996 68999999999999999999999988663
No 57
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=99.06 E-value=1.5e-10 Score=90.55 Aligned_cols=67 Identities=18% Similarity=0.211 Sum_probs=59.9
Q ss_pred ccccccccccccCCCCCCCCCCHHHHHHHHHHHHhhCCchhhhhccC-----CCCCHHHHHHHHHHHhhhhhhhCC
Q 036215 63 GKSCRLRWMNYLRPSIKRGHIAPDEEDLILRLHRLLGNRWSLIAGRI-----PGRTDNEIKNYWNTRLRKKLISQG 133 (289)
Q Consensus 63 ~kqCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~kWs~IA~~l-----pgRT~~q~knRW~~~lrk~~~~~~ 133 (289)
+.=+.++|.++|.+ .+||.||+..|++|+++||.+|..|+..+ ++||..+||+||+.+.++-+...+
T Consensus 17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~ 88 (93)
T 3hm5_A 17 PVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp CCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 45678899999976 89999999999999999999999999998 589999999999999988766543
No 58
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=2.4e-10 Score=82.54 Aligned_cols=48 Identities=10% Similarity=0.095 Sum_probs=44.4
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCchhhhhccCCCCCHHHHHHHHHHHhh
Q 036215 79 KRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTRLR 126 (289)
Q Consensus 79 krg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~~lr 126 (289)
..++||+||++++++++.+||.+|..||..||+||..+|..+|+...+
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence 457999999999999999999999999999999999999999976554
No 59
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.93 E-value=8.8e-10 Score=82.42 Aligned_cols=51 Identities=16% Similarity=0.183 Sum_probs=45.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhC----CchhhhhccCCCCCHHHHHHHHHHHhhhh
Q 036215 77 SIKRGHIAPDEEDLILRLHRLLG----NRWSLIAGRIPGRTDNEIKNYWNTRLRKK 128 (289)
Q Consensus 77 ~lkrg~WT~EED~~Ll~lv~~~G----~kWs~IA~~lpgRT~~q~knRW~~~lrk~ 128 (289)
..+.++||.||+++|.+++.+|+ .+|.+||..| |||..+|++||+.+++..
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~ 59 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSV 59 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhc
Confidence 45678999999999999999997 5799999998 999999999998887653
No 60
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.92 E-value=1.2e-10 Score=91.16 Aligned_cols=47 Identities=11% Similarity=0.339 Sum_probs=42.6
Q ss_pred cCCCCHHHHHHHHHHHHHhC---CCCcceeccccCcccCcccccccccccc
Q 036215 27 KGPWTPEEDEILSNYIKREG---EGQWRTLPKRAGLLRCGKSCRLRWMNYL 74 (289)
Q Consensus 27 kg~WT~EEDe~L~~~V~~~g---~~~W~~IA~~~~~~Rt~kqCr~Rw~n~L 74 (289)
+++||+|||++|++++.+|+ ..+|..||+.+++ |+.++|+.||.+++
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpG-RT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVEG-RTPEEVKKHYEILV 57 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTT-CCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 45899999999999999997 3579999999997 99999999998864
No 61
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.80 E-value=4.6e-09 Score=93.88 Aligned_cols=50 Identities=18% Similarity=0.279 Sum_probs=46.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCchhhhhccCCCCCHHHHHHHHHHHhhh
Q 036215 78 IKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTRLRK 127 (289)
Q Consensus 78 lkrg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~~lrk 127 (289)
...++||+||+.++++++.+||++|..||+.+++||..|||++|+..+++
T Consensus 131 k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 34679999999999999999999999999999999999999999988876
No 62
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.69 E-value=4e-09 Score=76.47 Aligned_cols=48 Identities=17% Similarity=0.239 Sum_probs=42.5
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCcceec---cccCcccCccccccccccccC
Q 036215 26 KKGPWTPEEDEILSNYIKREGEGQWRTLP---KRAGLLRCGKSCRLRWMNYLR 75 (289)
Q Consensus 26 kkg~WT~EEDe~L~~~V~~~g~~~W~~IA---~~~~~~Rt~kqCr~Rw~n~L~ 75 (289)
++++||+|||+.|++.|++||. +|..|+ ..+.+ |+...+..||++...
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~-RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKG-RRAVDLAHKYHRLIS 57 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTT-CCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccC-cccchHHHHHHHHHh
Confidence 5679999999999999999998 999999 45555 999999999998654
No 63
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.61 E-value=1.3e-08 Score=73.38 Aligned_cols=48 Identities=15% Similarity=0.217 Sum_probs=43.0
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCcceeccccCcccCccccccccccc
Q 036215 24 GIKKGPWTPEEDEILSNYIKREGEGQWRTLPKRAGLLRCGKSCRLRWMNY 73 (289)
Q Consensus 24 ~lkkg~WT~EEDe~L~~~V~~~g~~~W~~IA~~~~~~Rt~kqCr~Rw~n~ 73 (289)
.-..++||+||++++.+++.+||. +|..||..|++ |+..||+.+|...
T Consensus 9 r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~~l~~-rt~~~~v~~Yy~~ 56 (61)
T 2eqr_A 9 RQFMNVWTDHEKEIFKDKFIQHPK-NFGLIASYLER-KSVPDCVLYYYLT 56 (61)
T ss_dssp CSCCCSCCHHHHHHHHHHHHHSTT-CHHHHHHHCTT-SCHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCC-CCHHHHHHHHHHh
Confidence 345579999999999999999995 99999999987 9999999998654
No 64
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.58 E-value=4.1e-08 Score=73.50 Aligned_cols=48 Identities=17% Similarity=0.169 Sum_probs=43.5
Q ss_pred CCCCCHHHHHHHHHHHHhhCC----chhhhhccCCCCCHHHHHHHHHHHhhh
Q 036215 80 RGHIAPDEEDLILRLHRLLGN----RWSLIAGRIPGRTDNEIKNYWNTRLRK 127 (289)
Q Consensus 80 rg~WT~EED~~Ll~lv~~~G~----kWs~IA~~lpgRT~~q~knRW~~~lrk 127 (289)
...||.||+++|.+++..|+. +|.+||..+||||..+|+.||..+++.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 468999999999999999984 699999999999999999999887554
No 65
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.52 E-value=5.1e-08 Score=95.90 Aligned_cols=47 Identities=19% Similarity=0.329 Sum_probs=43.5
Q ss_pred CCCCHHHHHHHHHHHHhhCCchhhhhccCCCCCHHHHHHHHHHHhhh
Q 036215 81 GHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTRLRK 127 (289)
Q Consensus 81 g~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~~lrk 127 (289)
.+||+||..++++++.+||..|..||+.++.||..|||++|....++
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr 427 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 427 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999765554
No 66
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.49 E-value=1.5e-08 Score=75.72 Aligned_cols=48 Identities=15% Similarity=0.225 Sum_probs=41.7
Q ss_pred ccCCCCHHHHHHHHHHHHHhCC---CCcceeccccCcccCccccccccccccC
Q 036215 26 KKGPWTPEEDEILSNYIKREGE---GQWRTLPKRAGLLRCGKSCRLRWMNYLR 75 (289)
Q Consensus 26 kkg~WT~EEDe~L~~~V~~~g~---~~W~~IA~~~~~~Rt~kqCr~Rw~n~L~ 75 (289)
+++.||.|||++|.+++.+|+. .+|..||+.+ + |+..+|+.||..++.
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-g-Rt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-G-RSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-T-SCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-C-CCHHHHHHHHHHHHH
Confidence 3458999999999999999983 5799999998 4 999999999987654
No 67
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.48 E-value=1.3e-07 Score=67.86 Aligned_cols=47 Identities=19% Similarity=0.319 Sum_probs=42.7
Q ss_pred CCCCCHHHHHHHHHHHHhh--------CCc-hhhhhc-cCCCCCHHHHHHHHHHHhh
Q 036215 80 RGHIAPDEEDLILRLHRLL--------GNR-WSLIAG-RIPGRTDNEIKNYWNTRLR 126 (289)
Q Consensus 80 rg~WT~EED~~Ll~lv~~~--------G~k-Ws~IA~-~lpgRT~~q~knRW~~~lr 126 (289)
|.+||+|||.+|++.|.+| |++ |..|++ .+|++|-.++|+||...|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5789999999999999999 654 999999 7999999999999988774
No 68
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.35 E-value=6.8e-08 Score=69.39 Aligned_cols=48 Identities=23% Similarity=0.466 Sum_probs=42.2
Q ss_pred cCCCCHHHHHHHHHHHHHh--------CCCCcceecc-ccCcccCccccccccccccC
Q 036215 27 KGPWTPEEDEILSNYIKRE--------GEGQWRTLPK-RAGLLRCGKSCRLRWMNYLR 75 (289)
Q Consensus 27 kg~WT~EEDe~L~~~V~~~--------g~~~W~~IA~-~~~~~Rt~kqCr~Rw~n~L~ 75 (289)
|.+||+|||+.|+.+|.++ |..-|..+++ .++. ++..+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~-HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQ-HSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSS-CCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCC-CCHHHHHHHHHHHcc
Confidence 5689999999999999999 4445999999 7876 999999999999874
No 69
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.29 E-value=1.2e-07 Score=71.06 Aligned_cols=47 Identities=21% Similarity=0.437 Sum_probs=42.7
Q ss_pred CCCHHHHHHHHHHHHHhCC---CCcceeccccCcccCccccccccccccCC
Q 036215 29 PWTPEEDEILSNYIKREGE---GQWRTLPKRAGLLRCGKSCRLRWMNYLRP 76 (289)
Q Consensus 29 ~WT~EEDe~L~~~V~~~g~---~~W~~IA~~~~~~Rt~kqCr~Rw~n~L~p 76 (289)
.||.||+++|.+++..|+. ++|..||..+|+ |+..+|+.||..++..
T Consensus 10 ~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~g-KT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 10 EWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGS-RSPEECQRKYMENPRG 59 (73)
T ss_dssp CCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTT-SCHHHHHHHHHHSSSS
T ss_pred CCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCC-CCHHHHHHHHHHHHhc
Confidence 6999999999999999975 579999999998 9999999999887653
No 70
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29 E-value=1.5e-06 Score=62.96 Aligned_cols=51 Identities=16% Similarity=0.169 Sum_probs=45.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhCCchhhhhc-cCCCCCHHHHHHHHHHHh
Q 036215 75 RPSIKRGHIAPDEEDLILRLHRLLGNRWSLIAG-RIPGRTDNEIKNYWNTRL 125 (289)
Q Consensus 75 ~p~lkrg~WT~EED~~Ll~lv~~~G~kWs~IA~-~lpgRT~~q~knRW~~~l 125 (289)
.|.+...+||+||-.+..+++.+||..|..|++ .||+||..+|...|+...
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~wK 55 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYWK 55 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhccc
Confidence 367788999999999999999999999999999 589999999999886443
No 71
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.17 E-value=1.7e-06 Score=66.99 Aligned_cols=47 Identities=15% Similarity=0.280 Sum_probs=43.8
Q ss_pred CCCCHHHHHHHHHHHHhhCC---chhhhhccCCCCCHHHHHHHHHHHhhh
Q 036215 81 GHIAPDEEDLILRLHRLLGN---RWSLIAGRIPGRTDNEIKNYWNTRLRK 127 (289)
Q Consensus 81 g~WT~EED~~Ll~lv~~~G~---kWs~IA~~lpgRT~~q~knRW~~~lrk 127 (289)
--||.|||..||..+++-|. .|..||+.|.+|+.++|++|++.+++-
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~L 83 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQL 83 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 36999999999999999997 799999999999999999999988864
No 72
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.12 E-value=6.4e-07 Score=80.10 Aligned_cols=49 Identities=20% Similarity=0.377 Sum_probs=44.5
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCcceeccccCcccCccccccccccccC
Q 036215 25 IKKGPWTPEEDEILSNYIKREGEGQWRTLPKRAGLLRCGKSCRLRWMNYLR 75 (289)
Q Consensus 25 lkkg~WT~EEDe~L~~~V~~~g~~~W~~IA~~~~~~Rt~kqCr~Rw~n~L~ 75 (289)
...++||.||++++++++.+||. +|..||+.+++ |+..||+.+|.++..
T Consensus 131 k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~VgT-KT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIGN-KSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHSS-CCHHHHHHHHHHTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 34568999999999999999996 89999999998 999999999988764
No 73
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.12 E-value=6.4e-07 Score=66.86 Aligned_cols=43 Identities=21% Similarity=0.272 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHHHHHHHhhCC----chhhhhccCCCCCHHHHHHHHH
Q 036215 80 RGHIAPDEEDLILRLHRLLGN----RWSLIAGRIPGRTDNEIKNYWN 122 (289)
Q Consensus 80 rg~WT~EED~~Ll~lv~~~G~----kWs~IA~~lpgRT~~q~knRW~ 122 (289)
..+||.||+++|..+..+|+. +|.+||..+||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 458999999999999999985 7999999999999999999883
No 74
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.34 E-value=4.8e-07 Score=66.42 Aligned_cols=45 Identities=11% Similarity=0.307 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHHHHHhhCC---chhhhhccCCCCCHHHHHHHHHHHhhh
Q 036215 82 HIAPDEEDLILRLHRLLGN---RWSLIAGRIPGRTDNEIKNYWNTRLRK 127 (289)
Q Consensus 82 ~WT~EED~~Ll~lv~~~G~---kWs~IA~~lpgRT~~q~knRW~~~lrk 127 (289)
-||.|||..||..+++-|. .|..||..| +|+++||++||..+++-
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L 63 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKL 63 (70)
Confidence 5999999999999999997 799999999 99999999999988753
No 75
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.96 E-value=1.5e-05 Score=62.16 Aligned_cols=60 Identities=20% Similarity=0.269 Sum_probs=50.8
Q ss_pred ccccccCCCCCCCCCCHHHHHHHHHHHHhhCCchhhhhccCC-----CCCHHHHHHHHHHHhhhhhhhC
Q 036215 69 RWMNYLRPSIKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIP-----GRTDNEIKNYWNTRLRKKLISQ 132 (289)
Q Consensus 69 Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~kWs~IA~~lp-----gRT~~q~knRW~~~lrk~~~~~ 132 (289)
.|..+|. ...||.||...|++|+++|+-+|-.|+..+. .||-.++|.||+.+.++-+...
T Consensus 23 EY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 23 EYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp HHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 4555554 3689999999999999999999999998873 7999999999999988866544
No 76
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.87 E-value=2.1e-06 Score=64.03 Aligned_cols=42 Identities=12% Similarity=0.329 Sum_probs=38.8
Q ss_pred CCCHHHHHHHHHHHHHhCCC---CcceeccccCcccCccccccccc
Q 036215 29 PWTPEEDEILSNYIKREGEG---QWRTLPKRAGLLRCGKSCRLRWM 71 (289)
Q Consensus 29 ~WT~EEDe~L~~~V~~~g~~---~W~~IA~~~~~~Rt~kqCr~Rw~ 71 (289)
.||.||+++|.+++..|+.+ +|..||+.+|+ |+..+|+.+|.
T Consensus 22 ~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpG-KT~eEVk~hY~ 66 (74)
T 4eef_G 22 PWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKG-RTPEEVKKHYE 66 (74)
T ss_dssp CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCS-SCHHHHHGGGC
T ss_pred CCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCC-CCHHHHHHHHH
Confidence 79999999999999999753 89999999997 99999999985
No 77
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.82 E-value=2e-05 Score=73.49 Aligned_cols=99 Identities=15% Similarity=0.147 Sum_probs=78.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcceeccccCcccCcccccc-------ccccc---------------------------
Q 036215 28 GPWTPEEDEILSNYIKREGEGQWRTLPKRAGLLRCGKSCRL-------RWMNY--------------------------- 73 (289)
Q Consensus 28 g~WT~EEDe~L~~~V~~~g~~~W~~IA~~~~~~Rt~kqCr~-------Rw~n~--------------------------- 73 (289)
+.||..|...++.++.+||..+|..||..|++ ++...++. ||...
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~-Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l 189 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEG-KTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL 189 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTT-CCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36999999999999999999999999999986 77755532 22100
Q ss_pred ----------------cCCCCCCCCCCHHHHHHHHHHHHhhCC----chhhhhc------------cCCCCCHHHHHHHH
Q 036215 74 ----------------LRPSIKRGHIAPDEEDLILRLHRLLGN----RWSLIAG------------RIPGRTDNEIKNYW 121 (289)
Q Consensus 74 ----------------L~p~lkrg~WT~EED~~Ll~lv~~~G~----kWs~IA~------------~lpgRT~~q~knRW 121 (289)
..+..+...||+|||..||-++.+||- .|..|.. ++..||+.+|..|.
T Consensus 190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc 269 (304)
T 1ofc_X 190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC 269 (304)
T ss_dssp HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 012234568999999999999999995 5999962 34679999999999
Q ss_pred HHHhhh
Q 036215 122 NTRLRK 127 (289)
Q Consensus 122 ~~~lrk 127 (289)
..+++-
T Consensus 270 ~tLi~~ 275 (304)
T 1ofc_X 270 NTLITL 275 (304)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988864
No 78
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.81 E-value=2.7e-05 Score=60.73 Aligned_cols=46 Identities=15% Similarity=0.105 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHHHHHHhhCCchhhhhccCCCCCHHHHHHHHHHHh
Q 036215 80 RGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTRL 125 (289)
Q Consensus 80 rg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~~l 125 (289)
...||+||.++..+++.+||.+|..|+..||+||..+|-..|+...
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~K 88 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTK 88 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhccc
Confidence 4689999999999999999999999999999999999999886443
No 79
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.81 E-value=3.5e-05 Score=56.89 Aligned_cols=44 Identities=16% Similarity=0.176 Sum_probs=41.1
Q ss_pred CCCCCHHHHHHHHHHHHhhCCchhhhhc-cCCCCCHHHHHHHHHH
Q 036215 80 RGHIAPDEEDLILRLHRLLGNRWSLIAG-RIPGRTDNEIKNYWNT 123 (289)
Q Consensus 80 rg~WT~EED~~Ll~lv~~~G~kWs~IA~-~lpgRT~~q~knRW~~ 123 (289)
..+||+||..+..+++.+||..|..|++ .||+||..+|...|+.
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4689999999999999999999999999 5899999999999873
No 80
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.57 E-value=2.9e-05 Score=56.12 Aligned_cols=49 Identities=10% Similarity=0.049 Sum_probs=43.1
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCcceecc-ccCcccCcccccccccc
Q 036215 22 KVGIKKGPWTPEEDEILSNYIKREGEGQWRTLPK-RAGLLRCGKSCRLRWMN 72 (289)
Q Consensus 22 k~~lkkg~WT~EEDe~L~~~V~~~g~~~W~~IA~-~~~~~Rt~kqCr~Rw~n 72 (289)
.|.++...||+||-++..+++.+||. +|..|++ .++. |+..+|..-|..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~-Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLPN-KETGELITFYYY 53 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCTT-SCHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcCC-CcHHHHHHHHhc
Confidence 46777789999999999999999997 8999998 5887 999999887653
No 81
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.19 E-value=0.00019 Score=54.39 Aligned_cols=48 Identities=17% Similarity=0.406 Sum_probs=40.6
Q ss_pred CCCCCHHHHHHHHHHHHhhCC----------chhhhhccCC----CCCHHHHHHHHHHHhhh
Q 036215 80 RGHIAPDEEDLILRLHRLLGN----------RWSLIAGRIP----GRTDNEIKNYWNTRLRK 127 (289)
Q Consensus 80 rg~WT~EED~~Ll~lv~~~G~----------kWs~IA~~lp----gRT~~q~knRW~~~lrk 127 (289)
...||.+|-.+||+++..+.. .|..||..|. .||+.||+++|.++.+.
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~ 65 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKE 65 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999976321 5999999863 69999999999988876
No 82
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.14 E-value=0.00012 Score=72.14 Aligned_cols=47 Identities=19% Similarity=0.375 Sum_probs=42.7
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCcceeccccCcccCcccccccccccc
Q 036215 26 KKGPWTPEEDEILSNYIKREGEGQWRTLPKRAGLLRCGKSCRLRWMNYL 74 (289)
Q Consensus 26 kkg~WT~EEDe~L~~~V~~~g~~~W~~IA~~~~~~Rt~kqCr~Rw~n~L 74 (289)
...+||.||-+++++++.+||. +|..||..+++ |+..||+..|.++-
T Consensus 379 ~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~VgT-KT~~Qvk~fy~~~k 425 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYGR-DFQAISDVIGN-KSVVQVKNFFVNYR 425 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHSS-CCHHHHHHHHHHTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 4578999999999999999996 99999999998 99999999887643
No 83
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.11 E-value=0.00011 Score=57.26 Aligned_cols=49 Identities=16% Similarity=0.272 Sum_probs=42.3
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCcceeccccC----cccCcccccccccccc
Q 036215 25 IKKGPWTPEEDEILSNYIKREGEGQWRTLPKRAG----LLRCGKSCRLRWMNYL 74 (289)
Q Consensus 25 lkkg~WT~EEDe~L~~~V~~~g~~~W~~IA~~~~----~~Rt~kqCr~Rw~n~L 74 (289)
|..++||.||++.|.+++.+|+. .|..|+.++. ..|+...++.||....
T Consensus 28 L~~~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~ 80 (93)
T 3hm5_A 28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence 44589999999999999999996 9999999983 2499999999997643
No 84
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.73 E-value=0.00044 Score=50.92 Aligned_cols=43 Identities=9% Similarity=0.207 Sum_probs=38.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcceecc-ccCcccCcccccccccc
Q 036215 28 GPWTPEEDEILSNYIKREGEGQWRTLPK-RAGLLRCGKSCRLRWMN 72 (289)
Q Consensus 28 g~WT~EEDe~L~~~V~~~g~~~W~~IA~-~~~~~Rt~kqCr~Rw~n 72 (289)
..||+||-++..+++.+||. +|..|++ .++. |+..+|..-|..
T Consensus 9 ~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~-Kt~~~~v~fYY~ 52 (70)
T 2crg_A 9 EEWSASEACLFEEALEKYGK-DFNDIRQDFLPW-KSLTSIIEYYYM 52 (70)
T ss_dssp CCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSS-SCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcCC-CCHHHHHHHHHh
Confidence 37999999999999999997 8999999 5887 999999987753
No 85
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=96.71 E-value=0.00042 Score=53.91 Aligned_cols=43 Identities=12% Similarity=0.268 Sum_probs=39.1
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCcceeccccCcccCccccccccc
Q 036215 27 KGPWTPEEDEILSNYIKREGEGQWRTLPKRAGLLRCGKSCRLRWM 71 (289)
Q Consensus 27 kg~WT~EEDe~L~~~V~~~g~~~W~~IA~~~~~~Rt~kqCr~Rw~ 71 (289)
...||+||.+++.+++..||. +|..|+..++. |+..+|.+.|.
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~~l~~-Kt~~~cV~~YY 85 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPK-NFGLIASFLER-KTVAECVLYYY 85 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTT-CHHHHHHTCTT-CCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC-CHHHHHHHcCC-CCHHHHHHHHh
Confidence 357999999999999999996 89999999987 99999998764
No 86
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.67 E-value=0.0011 Score=51.31 Aligned_cols=44 Identities=16% Similarity=0.359 Sum_probs=39.4
Q ss_pred CCCCHHHHHHHHHHHHHhCC--CCcceeccccCcccCcccccccccc
Q 036215 28 GPWTPEEDEILSNYIKREGE--GQWRTLPKRAGLLRCGKSCRLRWMN 72 (289)
Q Consensus 28 g~WT~EEDe~L~~~V~~~g~--~~W~~IA~~~~~~Rt~kqCr~Rw~n 72 (289)
-.||.|||..++...++.|. ..|..||+.++. |++.|+.+|++.
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~N-ks~nqV~~RFq~ 79 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGN-KTPVEVSHRFRE 79 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSS-CCHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHcc-CCHHHHHHHHHH
Confidence 37999999999999999875 479999999986 999999999966
No 87
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.52 E-value=0.00016 Score=54.83 Aligned_cols=49 Identities=18% Similarity=0.468 Sum_probs=38.8
Q ss_pred ccCCCCHHHHHHHHHHHHHhCC---------CCcceeccccC---cccCcccccccccccc
Q 036215 26 KKGPWTPEEDEILSNYIKREGE---------GQWRTLPKRAG---LLRCGKSCRLRWMNYL 74 (289)
Q Consensus 26 kkg~WT~EEDe~L~~~V~~~g~---------~~W~~IA~~~~---~~Rt~kqCr~Rw~n~L 74 (289)
+...||.+|-..|+.+...... .-|..||..|. ..|++.||+.+|.+..
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3467999999999999876321 15999999863 4599999999998754
No 88
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=96.16 E-value=0.013 Score=56.01 Aligned_cols=100 Identities=18% Similarity=0.196 Sum_probs=75.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcceeccccCcccCcccccc-------ccccc---------------------------
Q 036215 28 GPWTPEEDEILSNYIKREGEGQWRTLPKRAGLLRCGKSCRL-------RWMNY--------------------------- 73 (289)
Q Consensus 28 g~WT~EEDe~L~~~V~~~g~~~W~~IA~~~~~~Rt~kqCr~-------Rw~n~--------------------------- 73 (289)
+.||.-|=..++.++.+||..+-..||..|+++++...++. ||...
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L 203 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL 203 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36999999999999999999899999999973366644431 22110
Q ss_pred -------------c----CCC-CCCCCCCHHHHHHHHHHHHhhCC----chhhhhcc------------CCCCCHHHHHH
Q 036215 74 -------------L----RPS-IKRGHIAPDEEDLILRLHRLLGN----RWSLIAGR------------IPGRTDNEIKN 119 (289)
Q Consensus 74 -------------L----~p~-lkrg~WT~EED~~Ll~lv~~~G~----kWs~IA~~------------lpgRT~~q~kn 119 (289)
| .+. -+...||+|||.-||-++.+||- .|..|-.. |..||+..|..
T Consensus 204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r 283 (374)
T 2y9y_A 204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR 283 (374)
T ss_dssp HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence 0 011 13457999999999999999994 59998433 35799999999
Q ss_pred HHHHHhhh
Q 036215 120 YWNTRLRK 127 (289)
Q Consensus 120 RW~~~lrk 127 (289)
|...|++-
T Consensus 284 Rc~tLi~~ 291 (374)
T 2y9y_A 284 RGNTLLQC 291 (374)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999964
No 89
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.15 E-value=0.00086 Score=49.19 Aligned_cols=48 Identities=13% Similarity=0.234 Sum_probs=40.9
Q ss_pred ccCCCCHHHHHHHHHHHHHhCC--CCcceeccccCcccCccccccccccccC
Q 036215 26 KKGPWTPEEDEILSNYIKREGE--GQWRTLPKRAGLLRCGKSCRLRWMNYLR 75 (289)
Q Consensus 26 kkg~WT~EEDe~L~~~V~~~g~--~~W~~IA~~~~~~Rt~kqCr~Rw~n~L~ 75 (289)
+--.||.|||..|+..+.+.|. .-|..||+.+ + |++.|+.+||...+.
T Consensus 13 ~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-n-ks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 13 IIILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-D-KNPNQVSERFQQLMK 62 (70)
Confidence 3347999999999999999886 3699999998 4 999999999987553
No 90
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=95.07 E-value=0.044 Score=39.64 Aligned_cols=48 Identities=13% Similarity=-0.032 Sum_probs=40.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCc---hhhhhccC--CCCCHHHHHHHHHHHh
Q 036215 78 IKRGHIAPDEEDLILRLHRLLGNR---WSLIAGRI--PGRTDNEIKNYWNTRL 125 (289)
Q Consensus 78 lkrg~WT~EED~~Ll~lv~~~G~k---Ws~IA~~l--pgRT~~q~knRW~~~l 125 (289)
..+-.||+|..+..++++.++|.. +..|-+.| +|.|..+|+.|...+.
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR 57 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR 57 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 456689999999999999999954 78998885 7999999998876543
No 91
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=94.47 E-value=0.025 Score=49.00 Aligned_cols=35 Identities=26% Similarity=0.346 Sum_probs=28.4
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCcceecc
Q 036215 21 SKVGIKKGPWTPEEDEILSNYIKREGEGQWRTLPK 55 (289)
Q Consensus 21 ~k~~lkkg~WT~EEDe~L~~~V~~~g~~~W~~IA~ 55 (289)
.++.-....||.+||..|+..|.+||.++|..|-.
T Consensus 128 ~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~ 162 (211)
T 4b4c_A 128 TKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKM 162 (211)
T ss_dssp CCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHh
Confidence 33333344799999999999999999999999854
No 92
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=93.94 E-value=0.016 Score=45.02 Aligned_cols=49 Identities=16% Similarity=0.272 Sum_probs=40.7
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCcceeccccC----cccCcccccccccccc
Q 036215 25 IKKGPWTPEEDEILSNYIKREGEGQWRTLPKRAG----LLRCGKSCRLRWMNYL 74 (289)
Q Consensus 25 lkkg~WT~EEDe~L~~~V~~~g~~~W~~IA~~~~----~~Rt~kqCr~Rw~n~L 74 (289)
++-..||.||...|..++.+|.. +|..|+.+.. ..|+..+.++||....
T Consensus 28 L~~~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 44568999999999999999996 8999988864 2488888888887643
No 93
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=93.48 E-value=0.13 Score=47.91 Aligned_cols=48 Identities=15% Similarity=0.193 Sum_probs=42.6
Q ss_pred CCCCCHHHHHHHHHHHHhhCC-chhhhhccCCCCCHHHHHHHHHHHhhh
Q 036215 80 RGHIAPDEEDLILRLHRLLGN-RWSLIAGRIPGRTDNEIKNYWNTRLRK 127 (289)
Q Consensus 80 rg~WT~EED~~Ll~lv~~~G~-kWs~IA~~lpgRT~~q~knRW~~~lrk 127 (289)
-+.||..+...++.++.+||. .|..||..|+|+|..+|+.++.....+
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~r 158 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER 158 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 357999999999999999995 799999999999999998887666654
No 94
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=91.59 E-value=0.19 Score=43.34 Aligned_cols=49 Identities=10% Similarity=0.165 Sum_probs=41.3
Q ss_pred CCCCCCHHHHHHHHHHHHhhC---Cchhhhhcc--CCCCCHHHHHHHHHHHhhh
Q 036215 79 KRGHIAPDEEDLILRLHRLLG---NRWSLIAGR--IPGRTDNEIKNYWNTRLRK 127 (289)
Q Consensus 79 krg~WT~EED~~Ll~lv~~~G---~kWs~IA~~--lpgRT~~q~knRW~~~lrk 127 (289)
....||+.|-..|+.++.+|| .+|..|+.. |.+++...|+..+..++..
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~ 59 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNG 59 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999 479999864 7899999999988766654
No 95
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=90.66 E-value=0.17 Score=46.34 Aligned_cols=27 Identities=37% Similarity=0.625 Sum_probs=25.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCCcceecc
Q 036215 29 PWTPEEDEILSNYIKREGEGQWRTLPK 55 (289)
Q Consensus 29 ~WT~EEDe~L~~~V~~~g~~~W~~IA~ 55 (289)
.|+.+||..|+..|.+||.|+|..|-.
T Consensus 170 ~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 170 NWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 799999999999999999999999943
No 96
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=79.61 E-value=3.4 Score=37.60 Aligned_cols=48 Identities=10% Similarity=0.185 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHHHHHHhhC---Cchhhhhcc--CCCCCHHHHHHHHHHHhhh
Q 036215 80 RGHIAPDEEDLILRLHRLLG---NRWSLIAGR--IPGRTDNEIKNYWNTRLRK 127 (289)
Q Consensus 80 rg~WT~EED~~Ll~lv~~~G---~kWs~IA~~--lpgRT~~q~knRW~~~lrk 127 (289)
+++||+-|-..|++.+.+|| .+|..|+.. |+.++...++.-+..++..
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~ 55 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEA 55 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 57899999999999999999 489999765 7899999999999877754
No 97
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=77.41 E-value=0.86 Score=32.80 Aligned_cols=45 Identities=9% Similarity=0.039 Sum_probs=31.1
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCC--CcceeccccCc-ccCcccccccc
Q 036215 26 KKGPWTPEEDEILSNYIKREGEG--QWRTLPKRAGL-LRCGKSCRLRW 70 (289)
Q Consensus 26 kkg~WT~EEDe~L~~~V~~~g~~--~W~~IA~~~~~-~Rt~kqCr~Rw 70 (289)
.+-.||+|..++++.+|...|.. -++.|.+.|+- +.|..++.-+.
T Consensus 6 ~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHL 53 (64)
T 1irz_A 6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHL 53 (64)
T ss_dssp SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHH
Confidence 45579999999999999999942 15667666652 14555555443
No 98
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=69.19 E-value=5 Score=27.30 Aligned_cols=41 Identities=20% Similarity=0.166 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhhCCchhhhhccCCCCCHHHHHHHHHHHhhh
Q 036215 86 DEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTRLRK 127 (289)
Q Consensus 86 EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~~lrk 127 (289)
+.+..++.++...|-.+..||..+ |-+...|+.+.+..+++
T Consensus 18 ~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~ 58 (70)
T 2o8x_A 18 TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDA 58 (70)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 455666777778899999999999 88999999887665544
No 99
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=66.86 E-value=5.9 Score=27.71 Aligned_cols=41 Identities=22% Similarity=0.362 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHh----hCCchhhhhccCCCCCHHHHHHHHHHHhhh
Q 036215 86 DEEDLILRLHRL----LGNRWSLIAGRIPGRTDNEIKNYWNTRLRK 127 (289)
Q Consensus 86 EED~~Ll~lv~~----~G~kWs~IA~~lpgRT~~q~knRW~~~lrk 127 (289)
+.+..++.+... .|..|..||..+ |-+...|+.+....+++
T Consensus 13 ~~er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~k 57 (73)
T 1ku3_A 13 EREAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRK 57 (73)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 445556666655 678999999999 89999999988766654
No 100
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=62.46 E-value=6.2 Score=27.20 Aligned_cols=41 Identities=20% Similarity=0.200 Sum_probs=31.3
Q ss_pred HHHHHHHHHHH----hhCCchhhhhccCCCCCHHHHHHHHHHHhhh
Q 036215 86 DEEDLILRLHR----LLGNRWSLIAGRIPGRTDNEIKNYWNTRLRK 127 (289)
Q Consensus 86 EED~~Ll~lv~----~~G~kWs~IA~~lpgRT~~q~knRW~~~lrk 127 (289)
+.+..++.+.. ..|..+..||..+ |-+...|+.+....+++
T Consensus 8 ~~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~k 52 (68)
T 2p7v_B 8 AREAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRK 52 (68)
T ss_dssp HHHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34455555555 3578999999999 99999999988776654
No 101
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=55.12 E-value=12 Score=27.37 Aligned_cols=41 Identities=17% Similarity=0.222 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhhCCchhhhhccCCCCCHHHHHHHHHHHhhh
Q 036215 86 DEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTRLRK 127 (289)
Q Consensus 86 EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~~lrk 127 (289)
+.+..++.++...|-.-..||..| |-+...|+.+....+++
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 80 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRA 80 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 455667777778899999999999 89999999988765543
No 102
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=54.85 E-value=21 Score=33.83 Aligned_cols=46 Identities=17% Similarity=0.182 Sum_probs=38.8
Q ss_pred CCCCHHHHHHHHHHHHhhCC-chhhhhccCC-CCCHHHHHHHHHHHhh
Q 036215 81 GHIAPDEEDLILRLHRLLGN-RWSLIAGRIP-GRTDNEIKNYWNTRLR 126 (289)
Q Consensus 81 g~WT~EED~~Ll~lv~~~G~-kWs~IA~~lp-gRT~~q~knRW~~~lr 126 (289)
+.||.-+=..++.++.+||. .-..||..|. |.|..+|+.+......
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~ 171 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWS 171 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 57999999999999999995 5999999996 9999999965544443
No 103
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=50.95 E-value=13 Score=31.51 Aligned_cols=25 Identities=32% Similarity=0.585 Sum_probs=19.8
Q ss_pred CCCccCCCCHHHHHHHH--------HHHHHhCC
Q 036215 23 VGIKKGPWTPEEDEILS--------NYIKREGE 47 (289)
Q Consensus 23 ~~lkkg~WT~EEDe~L~--------~~V~~~g~ 47 (289)
|.-..|-||+|+|+.|+ +++++||.
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG~ 142 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHGT 142 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHCH
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhCH
Confidence 44568899999999884 57888873
No 104
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=46.45 E-value=11 Score=29.44 Aligned_cols=38 Identities=18% Similarity=0.376 Sum_probs=29.8
Q ss_pred HHHHHHHhhCC--------chhhhhccCCCCCHHHHHHHHHHHhhh
Q 036215 90 LILRLHRLLGN--------RWSLIAGRIPGRTDNEIKNYWNTRLRK 127 (289)
Q Consensus 90 ~Ll~lv~~~G~--------kWs~IA~~lpgRT~~q~knRW~~~lrk 127 (289)
.|..+|...|+ .|..|+..|.--.+..+|..|..+|-+
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 47777888874 699999997333378999999988865
No 105
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=46.25 E-value=20 Score=25.88 Aligned_cols=41 Identities=20% Similarity=0.195 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHh----hCCchhhhhccCCCCCHHHHHHHHHHHhhh
Q 036215 86 DEEDLILRLHRL----LGNRWSLIAGRIPGRTDNEIKNYWNTRLRK 127 (289)
Q Consensus 86 EED~~Ll~lv~~----~G~kWs~IA~~lpgRT~~q~knRW~~~lrk 127 (289)
+.+..++.+... .|-.+..||..| |-+...|+.+-...+++
T Consensus 21 ~~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~k 65 (87)
T 1tty_A 21 PREAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRK 65 (87)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 445556666655 678999999999 99999999987766554
No 106
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=45.61 E-value=17 Score=29.15 Aligned_cols=31 Identities=16% Similarity=0.036 Sum_probs=25.0
Q ss_pred HhhCCchhhhhccCCCCCHHHHHHHHHHHhhh
Q 036215 96 RLLGNRWSLIAGRIPGRTDNEIKNYWNTRLRK 127 (289)
Q Consensus 96 ~~~G~kWs~IA~~lpgRT~~q~knRW~~~lrk 127 (289)
...|-....||..| |-+...|+++....+++
T Consensus 148 ~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 178 (184)
T 2q1z_A 148 FFGDLTHRELAAET-GLPLGTIKSRIRLALDR 178 (184)
T ss_dssp HHSCCSSCCSTTTC-CCCCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34577899999999 88999999988766654
No 107
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=45.47 E-value=28 Score=24.05 Aligned_cols=42 Identities=14% Similarity=0.120 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHHHhhCCchhhhhccCCCCCHHHHHHHHHHHhhh
Q 036215 83 IAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTRLRK 127 (289)
Q Consensus 83 WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~~lrk 127 (289)
+|+.|-+ ++.++ ..|..-..||..| |-+...|+.+....+++
T Consensus 17 L~~~e~~-vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 17 LSERERQ-VLSAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAK 58 (79)
T ss_dssp HCHHHHH-HHHHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred CCHHHHH-HHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 4555544 44555 6788999999999 88999999888766654
No 108
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=45.21 E-value=28 Score=26.56 Aligned_cols=38 Identities=18% Similarity=0.378 Sum_probs=28.1
Q ss_pred HHHHHHHhhCC--------chhhhhccCCCC-C---HHHHHHHHHHHhhh
Q 036215 90 LILRLHRLLGN--------RWSLIAGRIPGR-T---DNEIKNYWNTRLRK 127 (289)
Q Consensus 90 ~Ll~lv~~~G~--------kWs~IA~~lpgR-T---~~q~knRW~~~lrk 127 (289)
.|..+|.+.|+ .|..|+..|.-- + ...+|..|..+|-+
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 46677777774 699999998322 2 56889999888865
No 109
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=44.61 E-value=25 Score=28.25 Aligned_cols=35 Identities=14% Similarity=0.115 Sum_probs=26.7
Q ss_pred HHHHHhhCCchhhhhccCCCCCHHHHHHHHHHHhhh
Q 036215 92 LRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTRLRK 127 (289)
Q Consensus 92 l~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~~lrk 127 (289)
+.++...|-....||..| |-+...|+++....+++
T Consensus 149 l~l~~~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~ 183 (194)
T 1or7_A 149 ITLRELDGLSYEEIAAIM-DCPVGTVRSRIFRAREA 183 (194)
T ss_dssp HHHHHTTCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred hHHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 333344577899999999 89999999988766554
No 110
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=44.41 E-value=24 Score=27.55 Aligned_cols=38 Identities=13% Similarity=0.263 Sum_probs=28.6
Q ss_pred HHHHHHHhhCC--------chhhhhccCCCCC----HHHHHHHHHHHhhh
Q 036215 90 LILRLHRLLGN--------RWSLIAGRIPGRT----DNEIKNYWNTRLRK 127 (289)
Q Consensus 90 ~Ll~lv~~~G~--------kWs~IA~~lpgRT----~~q~knRW~~~lrk 127 (289)
.|..+|...|+ .|..|+..|.--. ...+|..|..+|-+
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 57777778874 6999999982221 56889999988865
No 111
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=43.82 E-value=33 Score=25.22 Aligned_cols=46 Identities=15% Similarity=0.173 Sum_probs=35.7
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCchhhhhccCCCCCHHHHHHHHHHHhhh
Q 036215 79 KRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTRLRK 127 (289)
Q Consensus 79 krg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~~lrk 127 (289)
.....|+.|-+.|.-++ .|..-..||..| |-+...|+.+...++++
T Consensus 26 ~~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp ---CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34568888877665544 899999999999 89999999999887765
No 112
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=41.06 E-value=5.6 Score=31.81 Aligned_cols=57 Identities=14% Similarity=0.248 Sum_probs=39.2
Q ss_pred HHHHHHHHhCC-------CCcceeccccCcccCc----cccccccccccCCCCCCCCCCHHHHHHHHHHHH
Q 036215 37 ILSNYIKREGE-------GQWRTLPKRAGLLRCG----KSCRLRWMNYLRPSIKRGHIAPDEEDLILRLHR 96 (289)
Q Consensus 37 ~L~~~V~~~g~-------~~W~~IA~~~~~~Rt~----kqCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~ 96 (289)
+|..+|.+.|- ..|..|+..|+...+. ...+..|.++|.|-- ..+++|-..|.+-+.
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE---~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYD---SLSPEEHRRLEKEVL 113 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHH---HCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHH---CcCHHHHhhHHHHHH
Confidence 44555555542 3699999999764322 356778999887642 488899888887764
No 113
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=40.40 E-value=18 Score=28.77 Aligned_cols=39 Identities=18% Similarity=0.348 Sum_probs=29.9
Q ss_pred HHHHHHHhhCC--------chhhhhccCCCCCHHHHHHHHHHHhhhh
Q 036215 90 LILRLHRLLGN--------RWSLIAGRIPGRTDNEIKNYWNTRLRKK 128 (289)
Q Consensus 90 ~Ll~lv~~~G~--------kWs~IA~~lpgRT~~q~knRW~~~lrk~ 128 (289)
.|..+|.+.|. .|..|+..|.--....+|..|..+|-+-
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 98 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 98 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHH
Confidence 46677777774 6999999973333899999999998763
No 114
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=39.81 E-value=32 Score=27.10 Aligned_cols=38 Identities=13% Similarity=0.246 Sum_probs=28.6
Q ss_pred HHHHHHHhhCC--------chhhhhccCCC-C---CHHHHHHHHHHHhhh
Q 036215 90 LILRLHRLLGN--------RWSLIAGRIPG-R---TDNEIKNYWNTRLRK 127 (289)
Q Consensus 90 ~Ll~lv~~~G~--------kWs~IA~~lpg-R---T~~q~knRW~~~lrk 127 (289)
.|..+|..+|+ .|..|+..|.- . ....+|..|..+|.+
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 46777777774 69999999822 2 256889999988876
No 115
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=39.78 E-value=32 Score=27.05 Aligned_cols=38 Identities=18% Similarity=0.310 Sum_probs=28.3
Q ss_pred HHHHHHHhhCC--------chhhhhccCCC--CC--HHHHHHHHHHHhhh
Q 036215 90 LILRLHRLLGN--------RWSLIAGRIPG--RT--DNEIKNYWNTRLRK 127 (289)
Q Consensus 90 ~Ll~lv~~~G~--------kWs~IA~~lpg--RT--~~q~knRW~~~lrk 127 (289)
.|..+|.++|+ .|..|+..|.- -+ ...+|..|..+|-+
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 46777777774 69999999822 12 46889999988876
No 116
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=39.58 E-value=30 Score=25.49 Aligned_cols=43 Identities=26% Similarity=0.224 Sum_probs=33.7
Q ss_pred CCCHHHHHHHHHHHHhhCCchhhhhccCCCCCHHHHHHHHHHHhhh
Q 036215 82 HIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTRLRK 127 (289)
Q Consensus 82 ~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~~lrk 127 (289)
..|+.|-+.|.- + ..|..-..||..| |-+...|+.+....+++
T Consensus 27 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 69 (95)
T 3c57_A 27 GLTDQERTLLGL-L-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAK 69 (95)
T ss_dssp CCCHHHHHHHHH-H-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 466666655554 5 7888999999999 88999999988766655
No 117
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=38.87 E-value=29 Score=24.77 Aligned_cols=43 Identities=28% Similarity=0.387 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHHHHhhCCchhhhhccCCCCCHHHHHHHHHHHhhh
Q 036215 82 HIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTRLRK 127 (289)
Q Consensus 82 ~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~~lrk 127 (289)
..|+.|-+.|. ++ ..|..-.+||+.| |-+...|+.+.+..+++
T Consensus 21 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 21 QLTPRERDILK-LI-AQGLPNKMIARRL-DITESTVKVHVKHMLKK 63 (82)
T ss_dssp GSCHHHHHHHH-HH-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 46666665554 44 6788999999999 88999999988766654
No 118
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=37.81 E-value=40 Score=25.82 Aligned_cols=41 Identities=15% Similarity=0.057 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhhCCchhhhhccCCCCCHHHHHHHHHHHhhh
Q 036215 86 DEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTRLRK 127 (289)
Q Consensus 86 EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~~lrk 127 (289)
+.+..++.++...|-....||..+ |-+...|+.+.+..+++
T Consensus 28 ~~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 68 (113)
T 1xsv_A 28 NKQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGDL 68 (113)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 345566777777899999999999 88999999887655543
No 119
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=37.28 E-value=34 Score=23.13 Aligned_cols=44 Identities=11% Similarity=0.135 Sum_probs=33.9
Q ss_pred CCCCHHHHHHHHHHHHhhCCchhhhhccCCCCCHHHHHHHHHHHhhh
Q 036215 81 GHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTRLRK 127 (289)
Q Consensus 81 g~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~~lrk 127 (289)
..+|+.|-+.|.- + ..|..-..||..+ |-+...|+.+....+++
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQK 53 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 4577777666554 4 6788999999999 88999999888766654
No 120
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=36.96 E-value=47 Score=21.68 Aligned_cols=38 Identities=18% Similarity=0.141 Sum_probs=29.9
Q ss_pred HHHHHHHHHhhCCchhhhhccCCCCCHHHHHHHHHHHhhh
Q 036215 88 EDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTRLRK 127 (289)
Q Consensus 88 D~~Ll~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~~lrk 127 (289)
+..++.+ ...|..-.+||..| |-+...|+.+....+++
T Consensus 3 e~~vl~l-~~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 40 (61)
T 2jpc_A 3 ERQVLKL-IDEGYTNHGISEKL-HISIKTVETHRMNMMRK 40 (61)
T ss_dssp HHHHHHH-HHTSCCSHHHHHHT-CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 4455566 46788889999999 88999999988776655
No 121
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=36.45 E-value=40 Score=26.62 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=29.3
Q ss_pred HHHHHHHhhCC--------chhhhhccC--CCC---CHHHHHHHHHHHhhh
Q 036215 90 LILRLHRLLGN--------RWSLIAGRI--PGR---TDNEIKNYWNTRLRK 127 (289)
Q Consensus 90 ~Ll~lv~~~G~--------kWs~IA~~l--pgR---T~~q~knRW~~~lrk 127 (289)
.|..+|..+|+ .|..|+..| |.. ....+|..|..+|-+
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 56777777774 699999998 332 267899999988876
No 122
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=36.35 E-value=25 Score=28.44 Aligned_cols=45 Identities=13% Similarity=0.050 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhhC-CchhhhhccCCCCCHHHHHHHHHHHhhhhhhh
Q 036215 86 DEEDLILRLHRLLG-NRWSLIAGRIPGRTDNEIKNYWNTRLRKKLIS 131 (289)
Q Consensus 86 EED~~Ll~lv~~~G-~kWs~IA~~lpgRT~~q~knRW~~~lrk~~~~ 131 (289)
+-|..|+.+..+-| -.|..||+.+ |=+...|+.|++.+....+..
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGVIR 48 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCee
Confidence 45788888888777 4799999999 999999999998888776654
No 123
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=36.29 E-value=35 Score=27.72 Aligned_cols=38 Identities=16% Similarity=0.276 Sum_probs=29.2
Q ss_pred HHHHHHHhhCC--------chhhhhccC--CCC---CHHHHHHHHHHHhhh
Q 036215 90 LILRLHRLLGN--------RWSLIAGRI--PGR---TDNEIKNYWNTRLRK 127 (289)
Q Consensus 90 ~Ll~lv~~~G~--------kWs~IA~~l--pgR---T~~q~knRW~~~lrk 127 (289)
.|..+|...|+ .|..|+..| |.. ....+|..|..+|-+
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~ 118 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYP 118 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHH
Confidence 46777777775 699999998 332 267899999988876
No 124
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=35.09 E-value=40 Score=27.75 Aligned_cols=41 Identities=12% Similarity=0.114 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhhCCchhhhhccCCCCCHHHHHHHHHHHhhh
Q 036215 86 DEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTRLRK 127 (289)
Q Consensus 86 EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~~lrk 127 (289)
+.+..++.++...|-....||+.| |-+...|+.+.+..+++
T Consensus 190 ~~~r~vl~l~~~~g~s~~EIA~~l-gis~~~V~~~~~ra~~~ 230 (239)
T 1rp3_A 190 EREKLVIQLIFYEELPAKEVAKIL-ETSVSRVSQLKAKALER 230 (239)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 344455555556688999999999 89999999888655543
No 125
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=34.80 E-value=34 Score=26.32 Aligned_cols=31 Identities=19% Similarity=0.187 Sum_probs=24.8
Q ss_pred HhhCCchhhhhccCCCCCHHHHHHHHHHHhhh
Q 036215 96 RLLGNRWSLIAGRIPGRTDNEIKNYWNTRLRK 127 (289)
Q Consensus 96 ~~~G~kWs~IA~~lpgRT~~q~knRW~~~lrk 127 (289)
...|-....||..| |-+...|+++....+++
T Consensus 121 ~~~g~s~~EIA~~l-gis~~tV~~~~~ra~~~ 151 (164)
T 3mzy_A 121 LIRGYSYREIATIL-SKNLKSIDNTIQRIRKK 151 (164)
T ss_dssp HTTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 44578899999999 89999999988765543
No 126
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=34.22 E-value=44 Score=25.58 Aligned_cols=35 Identities=17% Similarity=0.245 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHHHHhhCCchhhhhccCCCCCHHHHH
Q 036215 83 IAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIK 118 (289)
Q Consensus 83 WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~q~k 118 (289)
=|..-+..|..+....|..|..+|+.| |=+..+|.
T Consensus 13 ~~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~ 47 (111)
T 2yqf_A 13 GTEQAEMKMAVISEHLGLSWAELAREL-QFSVEDIN 47 (111)
T ss_dssp CSHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHH
T ss_pred hHhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHH
Confidence 366777888889999999999999999 76666553
No 127
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=33.65 E-value=35 Score=27.03 Aligned_cols=75 Identities=17% Similarity=0.318 Sum_probs=47.8
Q ss_pred cCCCCHHHH--HHHHHHHHHhCCCCcceeccccCcccCccccccccccccCCCCCCCCCCHHHHHHHHHHHHhhCC----
Q 036215 27 KGPWTPEED--EILSNYIKREGEGQWRTLPKRAGLLRCGKSCRLRWMNYLRPSIKRGHIAPDEEDLILRLHRLLGN---- 100 (289)
Q Consensus 27 kg~WT~EED--e~L~~~V~~~g~~~W~~IA~~~~~~Rt~kqCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~---- 100 (289)
+-+|.+.+. +.|.++....|. ....++. +++ |.- | =-.|..+|.++|+
T Consensus 7 ~~r~~~~~~Fl~~L~~F~~~rGt-pl~~~P~-i~g-k~l-----------D------------L~~Ly~~V~~~GG~~~V 60 (121)
T 2rq5_A 7 GRRWGPNVQRLACIKKHLRSQGI-TMDELPL-IGG-CEL-----------D------------LACFFRLINEMGGMQQV 60 (121)
T ss_dssp SSCCCHHHHHHHHHHHHHHHTTC-CCSSCCE-ETT-EEC-----------C------------HHHHHHHHHHTTSHHHH
T ss_pred hHhcCCcHHHHHHHHHHHHHcCC-CCCCCCc-CCC-Eec-----------c------------HHHHHHHHHHcCcHHHh
Confidence 347987775 456677777775 4444443 222 211 1 1257777888875
Q ss_pred ----chhhhhccC--CCC---CHHHHHHHHHHHhhh
Q 036215 101 ----RWSLIAGRI--PGR---TDNEIKNYWNTRLRK 127 (289)
Q Consensus 101 ----kWs~IA~~l--pgR---T~~q~knRW~~~lrk 127 (289)
.|..|+..| |.- ....+|.+|..+|-+
T Consensus 61 t~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~ 96 (121)
T 2rq5_A 61 TDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLS 96 (121)
T ss_dssp HHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHH
T ss_pred cccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHH
Confidence 699999998 332 256889999887765
No 128
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=32.51 E-value=35 Score=24.65 Aligned_cols=43 Identities=21% Similarity=0.113 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHHHhhCCchhhhhccCCCCCHHHHHHHHHHHhhh
Q 036215 82 HIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTRLRK 127 (289)
Q Consensus 82 ~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~~lrk 127 (289)
..|+.|-+.| .++ ..|..-..||..| |-+...|+.+....+++
T Consensus 29 ~Lt~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 29 MLTEREMEIL-LLI-AKGYSNQEIASAS-HITIKTVKTHVSNILSK 71 (91)
T ss_dssp GCCSHHHHHH-HHH-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3566665555 444 6788999999999 88999999988766654
No 129
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=31.01 E-value=1.4e+02 Score=23.46 Aligned_cols=78 Identities=12% Similarity=0.065 Sum_probs=46.9
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCcceeccccCcccCccccccccccc------cCCCCC----CCCCCHHHHHHHHHHHH
Q 036215 27 KGPWTPEEDEILSNYIKREGEGQWRTLPKRAGLLRCGKSCRLRWMNY------LRPSIK----RGHIAPDEEDLILRLHR 96 (289)
Q Consensus 27 kg~WT~EEDe~L~~~V~~~g~~~W~~IA~~~~~~Rt~kqCr~Rw~n~------L~p~lk----rg~WT~EED~~Ll~lv~ 96 (289)
..+.|.|+-..++.++. .|. ....||+.++ .+... ..||.+. +.+... ....++++.+.|++++.
T Consensus 23 ~~~~s~e~r~~ii~l~~-~G~-s~~~IA~~lg--is~~T-V~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~ 97 (159)
T 2k27_A 23 GRPLPEVVRQRIVDLAH-QGV-RPCDISRQLR--VSHGC-VSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKR 97 (159)
T ss_dssp SCSSCHHHHHHHHHHHH-HTC-CHHHHHHHHT--CCSHH-HHHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cCC-CHHHHHHHHC--cCHHH-HHHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 34689998888888774 553 6788999886 33333 3344432 222211 23478888888888886
Q ss_pred hhC-CchhhhhccC
Q 036215 97 LLG-NRWSLIAGRI 109 (289)
Q Consensus 97 ~~G-~kWs~IA~~l 109 (289)
+.. -.-..|+..|
T Consensus 98 ~~~~~s~~~i~~~l 111 (159)
T 2k27_A 98 QNPTMFAWEIRDRL 111 (159)
T ss_dssp HCSSSCHHHHHHHH
T ss_pred HCccchHHHHHHHH
Confidence 643 2223444443
No 130
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=30.08 E-value=26 Score=29.54 Aligned_cols=25 Identities=12% Similarity=0.222 Sum_probs=17.6
Q ss_pred cccccccC-CCCCCCCCCHHHHHHHH
Q 036215 68 LRWMNYLR-PSIKRGHIAPDEEDLIL 92 (289)
Q Consensus 68 ~Rw~n~L~-p~lkrg~WT~EED~~Ll 92 (289)
+.|..-.. |.-.+|-||+|+|+.|.
T Consensus 101 ~~l~~GkgiP~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 101 NMFKDNVNPPPNVPGIWTHDDDESLK 126 (168)
T ss_dssp HHHHHTCSSCTTCTTCCCHHHHHHHH
T ss_pred HHHHhCCCCCCCCCCCCChhhHHHHH
Confidence 34443333 56788999999999875
No 131
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=29.34 E-value=24 Score=26.33 Aligned_cols=38 Identities=18% Similarity=0.336 Sum_probs=26.7
Q ss_pred HHHHHHHhhCC--------chhhhhccC--CC--CCHHHHHHHHHHHhhh
Q 036215 90 LILRLHRLLGN--------RWSLIAGRI--PG--RTDNEIKNYWNTRLRK 127 (289)
Q Consensus 90 ~Ll~lv~~~G~--------kWs~IA~~l--pg--RT~~q~knRW~~~lrk 127 (289)
.|..+|...|. .|.+|+..| |. -....+|..|..+|-+
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 46777777763 699999997 22 1256888888777654
No 132
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=28.76 E-value=1.7e+02 Score=21.87 Aligned_cols=88 Identities=10% Similarity=0.068 Sum_probs=52.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcceeccccCcccCccccccccccccCC------CCCCCCCCHHHHHHHHHHHHhhCCc
Q 036215 28 GPWTPEEDEILSNYIKREGEGQWRTLPKRAGLLRCGKSCRLRWMNYLRP------SIKRGHIAPDEEDLILRLHRLLGNR 101 (289)
Q Consensus 28 g~WT~EEDe~L~~~V~~~g~~~W~~IA~~~~~~Rt~kqCr~Rw~n~L~p------~lkrg~WT~EED~~Ll~lv~~~G~k 101 (289)
...|.++-..++.++ ..|. .-..||+.++ .+...+ .||...... .......+++++..|+.+...-+-.
T Consensus 5 ~~~s~~~r~~i~~~~-~~G~-s~~~ia~~lg--is~~Tv-~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~s 79 (141)
T 1u78_A 5 SALSDTERAQLDVMK-LLNV-SLHEMSRKIS--RSRHCI-RVYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKT 79 (141)
T ss_dssp CCCCHHHHHHHHHHH-HTTC-CHHHHHHHHT--CCHHHH-HHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCCC
T ss_pred ccCCHHHHHHHHHHH-HcCC-CHHHHHHHHC--cCHHHH-HHHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCCC
Confidence 468888888777776 3453 6788999886 343333 334332111 1122357888888888873322234
Q ss_pred hhhhhccCCC--CCHHHHHHHH
Q 036215 102 WSLIAGRIPG--RTDNEIKNYW 121 (289)
Q Consensus 102 Ws~IA~~lpg--RT~~q~knRW 121 (289)
=..|+..| | -+...|....
T Consensus 80 ~~~i~~~l-g~~~s~~tV~r~l 100 (141)
T 1u78_A 80 ARDIRNEL-QLSASKRTILNVI 100 (141)
T ss_dssp HHHHHHHT-TCCSCHHHHHHHH
T ss_pred HHHHHHHH-CCCccHHHHHHHH
Confidence 46788877 4 5666665443
No 133
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=27.14 E-value=87 Score=23.41 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=35.3
Q ss_pred CCCCCHHHHHHHHHHHHhhCCchhhhhccCCCCCHHHHHHHHHHHhhh
Q 036215 80 RGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTRLRK 127 (289)
Q Consensus 80 rg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~~lrk 127 (289)
....|+.|-+.|.- + ..|..-.+||..| |-+...|+.+...++++
T Consensus 32 ~~~Lt~re~~Vl~l-~-~~G~s~~EIA~~L-~iS~~TV~~~l~ri~~K 76 (99)
T 1p4w_A 32 DKRLSPKESEVLRL-F-AEGFLVTEIAKKL-NRSIKTISSQKKSAMMK 76 (99)
T ss_dssp SSSCCHHHHHHHHH-H-HHTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 35678888776644 3 3788999999999 88999999988777665
No 134
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=27.03 E-value=50 Score=25.68 Aligned_cols=30 Identities=23% Similarity=0.452 Sum_probs=23.9
Q ss_pred HHHHHHHHHhhCCchhhhhccCCCCCHHHHH
Q 036215 88 EDLILRLHRLLGNRWSLIAGRIPGRTDNEIK 118 (289)
Q Consensus 88 D~~Ll~lv~~~G~kWs~IA~~lpgRT~~q~k 118 (289)
+..|..+....|..|..+|+.| |=+..+|.
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~ 42 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREVQ 42 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHHH
Confidence 4567888899999999999998 66666553
No 135
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=26.51 E-value=1.1e+02 Score=18.20 Aligned_cols=38 Identities=18% Similarity=0.286 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHHHHHhhCCchhhhhccCCCCCHHHHHHHH
Q 036215 82 HIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYW 121 (289)
Q Consensus 82 ~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~q~knRW 121 (289)
..++++-..++.++ .-|.....||+.| |-+...|+.+.
T Consensus 5 ~l~~~~~~~i~~~~-~~g~s~~~IA~~l-gis~~Tv~~~~ 42 (51)
T 1tc3_C 5 ALSDTERAQLDVMK-LLNVSLHEMSRKI-SRSRHCIRVYL 42 (51)
T ss_dssp CCCHHHHHHHHHHH-HTTCCHHHHHHHH-TCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 45677776777665 4578899999998 78888776543
No 136
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=25.66 E-value=71 Score=24.48 Aligned_cols=42 Identities=10% Similarity=0.063 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHHhhCCchhhhhccCCCCCHHHHHHHHHHHhh
Q 036215 83 IAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTRLR 126 (289)
Q Consensus 83 WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~~lr 126 (289)
+++ .+..++.++...|..-..||..+ |-+...|+.+.+..++
T Consensus 23 L~~-~~r~vl~l~y~~g~s~~EIA~~l-giS~~tV~~~l~ra~~ 64 (113)
T 1s7o_A 23 LTD-KQMNYIELYYADDYSLAEIADEF-GVSRQAVYDNIKRTEK 64 (113)
T ss_dssp SCH-HHHHHHHHHHHTCCCHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred CCH-HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 344 44566777777899999999999 8999999988876554
No 137
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=25.36 E-value=62 Score=25.21 Aligned_cols=37 Identities=22% Similarity=0.363 Sum_probs=25.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCchhhhhccCCCCCHHHH
Q 036215 77 SIKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEI 117 (289)
Q Consensus 77 ~lkrg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~q~ 117 (289)
.+-...=|.+ .|..++..+|..|..+|+.| |=+..+|
T Consensus 16 ~~~~~~~t~~---~l~~Ia~~lG~~Wk~LAR~L-Glse~dI 52 (114)
T 2of5_A 16 HILNSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDI 52 (114)
T ss_dssp CCTTSCCCHH---HHHHHHHTCCSTHHHHHHTT-TCCHHHH
T ss_pred hhhcCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHH
Confidence 3333444444 46666888999999999998 6555554
No 138
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=24.71 E-value=83 Score=23.95 Aligned_cols=31 Identities=26% Similarity=0.515 Sum_probs=23.3
Q ss_pred HHHHHHHHHhhCCchhhhhccCCCCCHHHHHH
Q 036215 88 EDLILRLHRLLGNRWSLIAGRIPGRTDNEIKN 119 (289)
Q Consensus 88 D~~Ll~lv~~~G~kWs~IA~~lpgRT~~q~kn 119 (289)
+..|..+....|..|..+|+.| |=+..+|..
T Consensus 18 ~~~~~~ia~~lg~~Wk~LAr~L-g~~~~~I~~ 48 (110)
T 1wxp_A 18 GEQIEVFANKLGEQWKILAPYL-EMKDSEIRQ 48 (110)
T ss_dssp HHHHHHHHHHHTTTHHHHTTTT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHh-CCCHHHHHH
Confidence 4556677788899999999999 666665533
No 139
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=24.66 E-value=65 Score=26.32 Aligned_cols=45 Identities=13% Similarity=0.153 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhhC-CchhhhhccCCCCCHHHHHHHHHHHhhhhhhh
Q 036215 86 DEEDLILRLHRLLG-NRWSLIAGRIPGRTDNEIKNYWNTRLRKKLIS 131 (289)
Q Consensus 86 EED~~Ll~lv~~~G-~kWs~IA~~lpgRT~~q~knRW~~~lrk~~~~ 131 (289)
+-|..|+.+....| -.+..||+.+ |-+...|+.|.+.+....+..
T Consensus 27 ~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G~I~ 72 (171)
T 2e1c_A 27 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVIK 72 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeE
Confidence 55667888877776 5799999999 889999999998887776554
No 140
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=24.08 E-value=1.2e+02 Score=23.41 Aligned_cols=100 Identities=12% Similarity=0.126 Sum_probs=0.0
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCcceeccccCcccCccccccccccc-----cCCCCCCCC----CCHHHHHHHHHHH
Q 036215 25 IKKGPWTPEEDEILSNYIKREGEGQWRTLPKRAGLLRCGKSCRLRWMNY-----LRPSIKRGH----IAPDEEDLILRLH 95 (289)
Q Consensus 25 lkkg~WT~EEDe~L~~~V~~~g~~~W~~IA~~~~~~Rt~kqCr~Rw~n~-----L~p~lkrg~----WT~EED~~Ll~lv 95 (289)
....+.|.|+-..++.++ ..|. ....||+.++ .+...++.-...+ +.+....+. .++++.+.|++++
T Consensus 28 ~~~~~~s~e~r~~iv~~~-~~G~-s~~~iA~~lg--is~~TV~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~ 103 (149)
T 1k78_A 28 VNGRPLPDVVRQRIVELA-HQGV-RPCDISRQLR--VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYK 103 (149)
T ss_dssp CTTSCCCHHHHHHHHHHH-HTTC-CHHHHHHHHT--CCHHHHHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHH-HcCC-CHHHHHHHHC--cCHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHH
Q ss_pred HhhC-CchhhhhccC---------CCCCHHHHHHHHHHHhhhh
Q 036215 96 RLLG-NRWSLIAGRI---------PGRTDNEIKNYWNTRLRKK 128 (289)
Q Consensus 96 ~~~G-~kWs~IA~~l---------pgRT~~q~knRW~~~lrk~ 128 (289)
.+.+ -.-..|+..| ..-+...|....+..+..+
T Consensus 104 ~~~~~~s~~~i~~~l~~~~~~~~g~~~S~sTV~r~L~~~~~~~ 146 (149)
T 1k78_A 104 RQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRTKVQQP 146 (149)
T ss_dssp HHCTTCCHHHHHHHHHHTTSSCTTTSCCHHHHHHHHHCC----
T ss_pred HhCcchhHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHhcCC
No 141
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=24.07 E-value=65 Score=25.11 Aligned_cols=27 Identities=26% Similarity=0.500 Sum_probs=20.9
Q ss_pred HHHHHHHhhCCchhhhhccCCCCCHHHH
Q 036215 90 LILRLHRLLGNRWSLIAGRIPGRTDNEI 117 (289)
Q Consensus 90 ~Ll~lv~~~G~kWs~IA~~lpgRT~~q~ 117 (289)
.|..++..+|..|..+|+.| |=+..+|
T Consensus 26 ~l~~Ia~~LG~~Wk~LAR~L-Glse~dI 52 (115)
T 2o71_A 26 QINQLAQRLGPEWEPMVLSL-GLSQTDI 52 (115)
T ss_dssp HHHHHHHHCCTTHHHHHHHT-TCCHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHH
Confidence 46666888999999999998 6555544
No 142
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=23.80 E-value=87 Score=24.45 Aligned_cols=45 Identities=9% Similarity=0.076 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhhC-CchhhhhccCCCCCHHHHHHHHHHHhhhhhhh
Q 036215 86 DEEDLILRLHRLLG-NRWSLIAGRIPGRTDNEIKNYWNTRLRKKLIS 131 (289)
Q Consensus 86 EED~~Ll~lv~~~G-~kWs~IA~~lpgRT~~q~knRW~~~lrk~~~~ 131 (289)
+-|..|+.+....| -.+..||+.+ |=+...|..+.+.+.+..+..
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 54 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGIIR 54 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEE
Confidence 44667777777766 5799999999 889999999998887776543
No 143
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=21.72 E-value=88 Score=24.51 Aligned_cols=45 Identities=13% Similarity=0.153 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhhC-CchhhhhccCCCCCHHHHHHHHHHHhhhhhhh
Q 036215 86 DEEDLILRLHRLLG-NRWSLIAGRIPGRTDNEIKNYWNTRLRKKLIS 131 (289)
Q Consensus 86 EED~~Ll~lv~~~G-~kWs~IA~~lpgRT~~q~knRW~~~lrk~~~~ 131 (289)
+-|..|+.+....| -.+..||+.+ |-+...|..|.+.+....+..
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 52 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVIK 52 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-CSCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeE
Confidence 34567777777766 5799999999 889999999998888776654
No 144
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=21.52 E-value=33 Score=26.20 Aligned_cols=38 Identities=11% Similarity=0.258 Sum_probs=27.7
Q ss_pred HHHHHHHhhCC--------chhhhhccC--CCC---CHHHHHHHHHHHhhh
Q 036215 90 LILRLHRLLGN--------RWSLIAGRI--PGR---TDNEIKNYWNTRLRK 127 (289)
Q Consensus 90 ~Ll~lv~~~G~--------kWs~IA~~l--pgR---T~~q~knRW~~~lrk 127 (289)
.|..+|..+|+ .|..|+..| +.. ....+|..|..+|-.
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 46677777773 699999997 222 246899999988865
Done!