BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036216
(695 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 181 bits (458), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 206/734 (28%), Positives = 293/734 (39%), Gaps = 166/734 (22%)
Query: 27 STLTTLDLSHNQFDNSFVPAWVFG-LSRLHFLNLGYN--NFQGPIPEGLQNLTSLKHLGL 83
++LT+LDLS N G S L FLN+ N +F G + GL+ L SL+ L L
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK-LNSLEVLDL 158
Query: 84 PFNHFS-SSVPKWF--DRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEI 140
N S ++V W D L+HL++S N + G + ++R NL L + + I
Sbjct: 159 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGI 216
Query: 141 SEILEIFSGCVXXXXXXXXXXXXXXXXXXTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLN 200
LG L LD+S N
Sbjct: 217 P------------------------------FLGDCSALQHLDISGN------------- 233
Query: 201 KLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLY 260
KL G S + T+L + + +N+ IPP L
Sbjct: 234 KLSGDFSRA-ISTCTELKLLNISSNQFV-----GPIPPLPL------------------- 268
Query: 261 SQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGE----------------- 303
K LQ+L L + +G P+ L + L LDL N +G
Sbjct: 269 --KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326
Query: 304 ---------LTNLTKASQLSYLSLIANNFSGSLPL----ISSNLTVLELSGNSLSGPIFH 350
+ L K L L L N FSG LP +S++L L+LS N+ SGPI
Sbjct: 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 386
Query: 351 FLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTXXXX---- 406
LC T L+ L+L N GK+P + L++L LS N +G +P+
Sbjct: 387 NLCQNPKNT--LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL 444
Query: 407 --------------------XXXXXXXXXRKNRLSGTIPILLKNCTSLVTLDVGENEVFG 446
N L+G IP L NCT+L + + N + G
Sbjct: 445 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 504
Query: 447 NIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTA 506
IP W G R + +L L +N+F G +P EL D L LDL N +GTIP + +
Sbjct: 505 EIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG 563
Query: 507 MATVNPFTGNAIEY-----------------------SFPLN--STIGPGTVTEQELVVT 541
N G Y S LN ST P +T + V
Sbjct: 564 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR---VY 620
Query: 542 KGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMR 601
G + + + +D S N+ SG +P + ++ + LNL +N +G IP+ +G +R
Sbjct: 621 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR 680
Query: 602 SLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSFNASCFLGN-NL 660
L +D S NK G IPQ+MS+LT L ++LSNN L+G IP Q ++F + FL N L
Sbjct: 681 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGL 740
Query: 661 CGAPLPKNCTDENV 674
CG PLP+ C N
Sbjct: 741 CGYPLPR-CDPSNA 753
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 181 bits (458), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 206/734 (28%), Positives = 292/734 (39%), Gaps = 166/734 (22%)
Query: 27 STLTTLDLSHNQFDNSFVPAWVFG-LSRLHFLNLGYN--NFQGPIPEGLQNLTSLKHLGL 83
++LT+LDLS N G S L FLN+ N +F G + GL+ L SL+ L L
Sbjct: 97 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK-LNSLEVLDL 155
Query: 84 PFNHFSSS-VPKWF--DRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEI 140
N S + V W D L+HL++S N + G + ++R NL L + + I
Sbjct: 156 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGI 213
Query: 141 SEILEIFSGCVXXXXXXXXXXXXXXXXXXTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLN 200
LG L LD+S N
Sbjct: 214 P------------------------------FLGDCSALQHLDISGN------------- 230
Query: 201 KLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLY 260
KL G S + T+L + + +N+ IPP L
Sbjct: 231 KLSGDFSRA-ISTCTELKLLNISSNQFV-----GPIPPLPL------------------- 265
Query: 261 SQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGE----------------- 303
K LQ+L L + +G P+ L + L LDL N +G
Sbjct: 266 --KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 323
Query: 304 ---------LTNLTKASQLSYLSLIANNFSGSLPL----ISSNLTVLELSGNSLSGPIFH 350
+ L K L L L N FSG LP +S++L L+LS N+ SGPI
Sbjct: 324 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 383
Query: 351 FLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTXXXX---- 406
LC T L+ L+L N GK+P + L++L LS N +G +P+
Sbjct: 384 NLCQNPKNT--LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL 441
Query: 407 --------------------XXXXXXXXXRKNRLSGTIPILLKNCTSLVTLDVGENEVFG 446
N L+G IP L NCT+L + + N + G
Sbjct: 442 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 501
Query: 447 NIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTA 506
IP W G R + +L L +N+F G +P EL D L LDL N +GTIP + +
Sbjct: 502 EIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG 560
Query: 507 MATVNPFTGNAIEY-----------------------SFPLN--STIGPGTVTEQELVVT 541
N G Y S LN ST P +T + V
Sbjct: 561 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR---VY 617
Query: 542 KGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMR 601
G + + + +D S N+ SG +P + ++ + LNL +N +G IP+ +G +R
Sbjct: 618 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR 677
Query: 602 SLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSFNASCFLGN-NL 660
L +D S NK G IPQ+MS+LT L ++LSNN L+G IP Q ++F + FL N L
Sbjct: 678 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGL 737
Query: 661 CGAPLPKNCTDENV 674
CG PLP+ C N
Sbjct: 738 CGYPLPR-CDPSNA 750
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 114/236 (48%), Gaps = 12/236 (5%)
Query: 440 GENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPN 499
G N + G IP + +++ L + N G +P L + L LD + N LSGT+P
Sbjct: 85 GINNLVGPIPPAIA-KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP 143
Query: 500 CIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTK----GVAADYNEILNLV 555
I +L + + F GN I + P + G + + +++ G LNL
Sbjct: 144 SISSLPNLVGIT-FDGNRISGAIP--DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA 200
Query: 556 RIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTG 615
+D S+N+ G + + K Q ++L+ N + + +G ++L +D N+ G
Sbjct: 201 -FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYG 258
Query: 616 EIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSFNASCFLGNN-LCGAPLPKNCT 670
+PQ ++ L FL+ LN+S N L G+IP LQ F+ S + N LCG+PLP CT
Sbjct: 259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPA-CT 313
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 2/119 (1%)
Query: 32 LDLSHNQFDNSF-VPAWVFGLSRLHFLNLG-YNNFQGPIPEGLQNLTSLKHLGLPFNHFS 89
LDLS + +P+ + L L+FL +G NN GPIP + LT L +L + + S
Sbjct: 55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114
Query: 90 SSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFS 148
++P + ++ L L SYN+L G +P S++ L NL + G +++ I + FS
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS 173
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 107/273 (39%), Gaps = 59/273 (21%)
Query: 342 NSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLP 401
N+L GPI I + +L +L++ + G +PD + L+ LD S
Sbjct: 87 NNLVGPIPP----AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS--------- 133
Query: 402 TXXXXXXXXXXXXXRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVL 461
N LSGT+P + + +LV + N + G IP +G
Sbjct: 134 ---------------YNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTS 178
Query: 462 LILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYS 521
+ + N G +P +L L +DL+ N L G A+V
Sbjct: 179 MTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGD-----------ASV----------- 215
Query: 522 FPLNSTIGPGTVTEQELVVTKGVAADYNEI--LNLVRIIDFSKNLFSGTLPMGLTNLKAV 579
G T++ + +A D ++ + +D N GTLP GLT LK +
Sbjct: 216 -----LFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270
Query: 580 QSLNLSYNIFTGRIPETIGTMRSLESIDFSVNK 612
SLN+S+N G IP+ G ++ + ++ NK
Sbjct: 271 HSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 84/200 (42%), Gaps = 12/200 (6%)
Query: 255 FPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELT-NLTKASQL 313
P + L +L + ++ +SG P+ L L LD +N + G L +++ L
Sbjct: 93 IPPAIAKLTQLHYLYITHTNVSGAIPD-FLSQIKTLVTLDFSYNALSGTLPPSISSLPNL 151
Query: 314 SYLSLIANNFSGSLP----LISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDR 369
++ N SG++P S T + +S N L+G I + L F+ L R
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF-----ANLNLAFVDLSR 206
Query: 370 NILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTXXXXXXXXXXXXXRKNRLSGTIPILLK 429
N+L+G + S +N + L+ N +L R NR+ GT+P L
Sbjct: 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLT 265
Query: 430 NCTSLVTLDVGENEVFGNIP 449
L +L+V N + G IP
Sbjct: 266 QLKFLHSLNVSFNNLCGEIP 285
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%)
Query: 44 VPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLE 103
+P + L++LH+L + + N G IP+ L + +L L +N S ++P L +L
Sbjct: 93 IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV 152
Query: 104 HLSLSYNSLEGRIPRSMARLCNL 126
++ N + G IP S L
Sbjct: 153 GITFDGNRISGAIPDSYGSFSKL 175
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 65/170 (38%), Gaps = 33/170 (19%)
Query: 23 VANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSL-KHL 81
++ TL TLD S+N + P+ + L L + N G IP+ + + L +
Sbjct: 121 LSQIKTLVTLDFSYNALSGTLPPS-ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSM 179
Query: 82 GLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEIS 141
+ N + +P F L +L + LS N LEG N ++++L L ++
Sbjct: 180 TISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG 238
Query: 142 EILEIFSGCVXXXXXXXXXXXXXXXXXXTDQLGQFKNLDSLDLSNNSIVG 191
++ G KNL+ LDL NN I G
Sbjct: 239 KV------------------------------GLSKNLNGLDLRNNRIYG 258
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 59/118 (50%), Gaps = 5/118 (4%)
Query: 2 LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFG-LSRLHFLNLG 60
L +L EL L QL P + LT L+L+HNQ + +P VF L+ L L+L
Sbjct: 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS--LPKGVFDKLTNLTELDLS 165
Query: 61 YNNFQGPIPEGL-QNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIP 117
YN Q +PEG+ LT LK L L N S FDRLT L+++ L N + P
Sbjct: 166 YNQLQS-LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 64/132 (48%), Gaps = 7/132 (5%)
Query: 2 LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFG-LSRLHFLNLG 60
LP++ L L +LH L + LT L L+ NQ + +P VF L+ L L L
Sbjct: 62 LPNVRYLALGGNKLHDISAL--KELTNLTYLILTGNQLQS--LPNGVFDKLTNLKELVLV 117
Query: 61 YNNFQGPIPEGL-QNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRS 119
N Q +P+G+ LT+L +L L N S FD+LT+L L LSYN L+
Sbjct: 118 ENQLQS-LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGV 176
Query: 120 MARLCNLRRLYL 131
+L L+ L L
Sbjct: 177 FDKLTQLKDLRL 188
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 52/107 (48%), Gaps = 7/107 (6%)
Query: 16 HHFPQLPVANFSTL---TTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGL 72
+ LP+ F L L L NQ S P L++L +L+LGYN Q +P+G+
Sbjct: 95 NKLQALPIGVFDQLVNLAELRLDRNQL-KSLPPRVFDSLTKLTYLSLGYNELQS-LPKGV 152
Query: 73 -QNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPR 118
LTSLK L L N FD+LT L+ L L N L+ R+P
Sbjct: 153 FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPE 198
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 59/127 (46%), Gaps = 5/127 (3%)
Query: 7 ELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFG-LSRLHFLNLGYNNFQ 65
+LDL + +L P + L L L+ N+ +PA +F L L L + N Q
Sbjct: 41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT--LPAGIFKELKNLETLWVTDNKLQ 98
Query: 66 GPIPEGL-QNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLC 124
+P G+ L +L L L N S P+ FD LT L +LSL YN L+ +L
Sbjct: 99 A-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157
Query: 125 NLRRLYL 131
+L+ L L
Sbjct: 158 SLKELRL 164
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 71/145 (48%), Gaps = 5/145 (3%)
Query: 2 LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFG-LSRLHFLNLG 60
L L L+L QL + + L TL L++NQ + +P VF L++L L LG
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL--ASLPLGVFDHLTQLDKLYLG 115
Query: 61 YNNFQGPIPEGL-QNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRS 119
N + +P G+ LT LK L L N S FD+LT+L+ LSLS N L+ +
Sbjct: 116 GNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGA 174
Query: 120 MARLCNLRRLYLGGAKLNQEISEIL 144
RL L+ + L G + + EIL
Sbjct: 175 FDRLGKLQTITLFGNQFDCSRCEIL 199
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 50/120 (41%), Gaps = 1/120 (0%)
Query: 12 NCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEG 71
+CQ +P + LDL + A GL++L +LNL YN Q
Sbjct: 20 DCQGKSLDSVPSGIPADTEKLDLQSTGL-ATLSDATFRGLTKLTWLNLDYNQLQTLSAGV 78
Query: 72 LQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYL 131
+LT L LGL N +S FD LT L+ L L N L+ RL L+ L L
Sbjct: 79 FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL 138
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 70/145 (48%), Gaps = 5/145 (3%)
Query: 2 LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFG-LSRLHFLNLG 60
L L L+L QL + + L TL L++NQ + +P VF L++L L LG
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL--ASLPLGVFDHLTQLDKLYLG 115
Query: 61 YNNFQGPIPEGL-QNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRS 119
N + +P G+ LT LK L L N S FD+LT+L+ LSLS N L+ +
Sbjct: 116 GNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGA 174
Query: 120 MARLCNLRRLYLGGAKLNQEISEIL 144
RL L+ + L G + + E L
Sbjct: 175 FDRLGKLQTITLFGNQFDCSRCETL 199
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 50/120 (41%), Gaps = 1/120 (0%)
Query: 12 NCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEG 71
+CQ +P + LDL + A GL++L +LNL YN Q
Sbjct: 20 DCQGKSLDSVPSGIPADTEKLDLQSTGL-ATLSDATFRGLTKLTWLNLDYNQLQTLSAGV 78
Query: 72 LQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYL 131
+LT L LGL N +S FD LT L+ L L N L+ RL L+ L L
Sbjct: 79 FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL 138
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 4 SLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFG-LSRLHFLNLGYN 62
S L+L + +L P + LT L LS NQ + +P VF L++L L L N
Sbjct: 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS--LPDGVFDKLTKLTILYLHEN 86
Query: 63 NFQGPIPEGL-QNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPR 118
Q +P G+ LT LK L L N S FDRLT L+ + L N + PR
Sbjct: 87 KLQS-LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 142
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 69/142 (48%), Gaps = 8/142 (5%)
Query: 3 PSLVELDLSNCQLH-HFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
P L LD++ LH P P N L L+LSH D S + GL L LNL
Sbjct: 399 PQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTS-NQHLLAGLQDLRHLNLQG 457
Query: 62 NNFQ-GPIPEG--LQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPR 118
N+FQ G I + LQ + SL+ L L + S + F L ++ HL LS+NSL G
Sbjct: 458 NSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTG---D 514
Query: 119 SMARLCNLRRLYLGGAKLNQEI 140
SM L +L+ LYL A N I
Sbjct: 515 SMDALSHLKGLYLNMASNNIRI 536
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 48/113 (42%), Gaps = 2/113 (1%)
Query: 23 VANFSTLTTLDLSHNQFDNS-FVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHL 81
+ L LDLSH+ + S + L L +LNL YN G + + L+ L
Sbjct: 345 LEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELL 404
Query: 82 GLPFNHFSSSVPKW-FDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGG 133
+ F H P F L L L+LS+ L+ +A L +LR L L G
Sbjct: 405 DVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQG 457
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 552 LNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFT-GRIPET--IGTMRSLESIDF 608
L+L+R+++ S L + L L+ ++ LNL N F G I +T + + SLE +
Sbjct: 423 LHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILIL 482
Query: 609 SVNKFTGEIPQSMSSLTFLNHLNLSNNYLTG 639
S Q+ L +NHL+LS+N LTG
Sbjct: 483 SSCNLLSIDQQAFHGLRNVNHLDLSHNSLTG 513
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 68/145 (46%), Gaps = 5/145 (3%)
Query: 2 LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFG-LSRLHFLNLG 60
L +L L L+ QL P + L L L NQ + +P VF L+ L +L L
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS--LPDGVFDKLTNLTYLYLY 141
Query: 61 YNNFQGPIPEGL-QNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRS 119
+N Q +P+G+ LT+L L L N S FD+LT L+ LSL+ N L+
Sbjct: 142 HNQLQS-LPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGV 200
Query: 120 MARLCNLRRLYLGGAKLNQEISEIL 144
RL +L ++L + S+IL
Sbjct: 201 FDRLTSLTHIWLLNNPWDCACSDIL 225
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 51 LSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYN 110
L + +L LG N L+ LT+L +L L N S FD+LT+L+ L L N
Sbjct: 62 LPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119
Query: 111 SLEGRIPRSMARLCNLRRLYL 131
L+ +L NL LYL
Sbjct: 120 QLQSLPDGVFDKLTNLTYLYL 140
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 52/117 (44%)
Query: 2 LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
L +L+ LD+S+ S+L L ++ N F +F+P L L FL+L
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 62 NNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPR 118
+ P +L+SL+ L + N S FDRLT L+ + L N + PR
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 9/108 (8%)
Query: 8 LDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYN--NFQ 65
L+L NC+ FP L + + LT + N+ N+F L L FL+L N +F+
Sbjct: 309 LELVNCKFGQFPTLKLKSLKRLT---FTSNKGGNAFSEV---DLPSLEFLDLSRNGLSFK 362
Query: 66 GPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLE 113
G + TSLK+L L FN ++ F L LEHL +++L+
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLK 409
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 121/528 (22%), Positives = 201/528 (38%), Gaps = 98/528 (18%)
Query: 2 LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
P L LDLS C++ + S L+TL L+ N + + A+ GLS L L
Sbjct: 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS-GLSSLQKLVAVE 109
Query: 62 NNFQGPIPEGLQNLTSLKHLGLPFNHFSS-SVPKWFDRLTHLEHLSLSYNSLEG------ 114
N + +L +LK L + N S +P++F LT+LEHL LS N ++
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169
Query: 115 RI----------------PRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVXXXXXXX 158
R+ P + + + + L L + L + C+
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNF-DSLNVMKTCIQGLAGLE 228
Query: 159 XXXXXXXXXXXTDQLGQFKNLDSLDLSNNS----IVGPRVLQLYLNKLHGTLSEIH--FA 212
LG+F+N +L+ + S + + + L L L +I F
Sbjct: 229 VHRLV---------LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN 279
Query: 213 NLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQK--------- 263
LT +S F + + +T++ +D+ F L L +C G L L S K
Sbjct: 280 CLTNVSSFSLVS--VTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKG 337
Query: 264 ----------DLQFLDLFNSGIS--GTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKAS 311
L+FLDL +G+S G + S YL DL N + +N
Sbjct: 338 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL-DLSFNGVITMSSNFLGLE 396
Query: 312 QLSYLSLIANNFSG----SLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFL 367
QL +L +N S+ L NL L++S ++ + F+ + N L+ L +
Sbjct: 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS-HTHTRVAFNGI---FNGLSSLEVLKM 452
Query: 368 DRNILQGK-LPDCWMSYQNLMALDLSNNKFTGNLPTXXXXXXXXXXXXXRKNRLSGTIPI 426
N Q LPD + +NL LDLS + +L P
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDLS------------------------QCQLEQLSPT 488
Query: 427 LLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLP 474
+ +SL L++ N++ ++P +R + + + L +N +D P
Sbjct: 489 AFNSLSSLQVLNMASNQL-KSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 25/131 (19%)
Query: 483 LQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTK 542
LQ+LDL+ + +L+ ++T+ TGN I+ S L + G ++ Q+LV +
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTL-ILTGNPIQ-SLALGAFSGLSSL--QKLVAVE 109
Query: 543 GVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTG-RIPETIGTMR 601
NL + +F P+G +LK ++ LN+++N+ ++PE +
Sbjct: 110 T---------NLASLENF---------PIG--HLKTLKELNVAHNLIQSFKLPEYFSNLT 149
Query: 602 SLESIDFSVNK 612
+LE +D S NK
Sbjct: 150 NLEHLDLSSNK 160
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 49/132 (37%), Gaps = 26/132 (19%)
Query: 8 LDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGP 67
LDLS L H +F L LDLS + A+ LS L L L N Q
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ-SLSHLSTLILTGNPIQSL 91
Query: 68 IPEGLQNLTSLKHL-----------GLPFNHFSS--------------SVPKWFDRLTHL 102
L+SL+ L P H + +P++F LT+L
Sbjct: 92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151
Query: 103 EHLSLSYNSLEG 114
EHL LS N ++
Sbjct: 152 EHLDLSSNKIQS 163
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Query: 29 LTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNH 87
L L L NQ +P VF L++L L+LG N L LK L + N
Sbjct: 66 LKELYLGSNQL--GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNK 123
Query: 88 FSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEIL 144
+ +P+ +RLTHL HL+L N L+ + RL +L YL G + E +I+
Sbjct: 124 LTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDIM 179
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Query: 5 LVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFG-LSRLHFLNLGYNN 63
L EL L + QL P + + LT LDL NQ + +P+ VF L L L + N
Sbjct: 66 LKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL--TVLPSAVFDRLVHLKELFMCCNK 123
Query: 64 FQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSL 107
+P G++ LT L HL L N S FDRL+ L H L
Sbjct: 124 LT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL 166
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 53/127 (41%), Gaps = 4/127 (3%)
Query: 12 NCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEG 71
+C+ +P + L L NQ P L L L LG N G +P G
Sbjct: 25 DCRSKRHASVPAGIPTNAQILYLHDNQI-TKLEPGVFDSLINLKELYLGSNQL-GALPVG 82
Query: 72 L-QNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLY 130
+ +LT L L L N + FDRL HL+ L + N L +PR + RL +L L
Sbjct: 83 VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLA 141
Query: 131 LGGAKLN 137
L +L
Sbjct: 142 LDQNQLK 148
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 13/154 (8%)
Query: 514 TGNAIEYSFPLNSTIGPGTVTEQELV------VTKGVAADYNEILNLVRIIDFSKNLFSG 567
+G ++ ++++ G T +++ +TK ++ ++NL + S L G
Sbjct: 20 SGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL--G 77
Query: 568 TLPMGL-TNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTF 626
LP+G+ +L + L+L N T + L+ + NK T E+P+ + LT
Sbjct: 78 ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTH 136
Query: 627 LNHLNLSNNYLTGKIPSST--QLQSFNASCFLGN 658
L HL L N L IP +L S + GN
Sbjct: 137 LTHLALDQNQLKS-IPHGAFDRLSSLTHAYLFGN 169
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 90/343 (26%), Positives = 130/343 (37%), Gaps = 81/343 (23%)
Query: 2 LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
L LV++ ++N Q+ P+AN + LT L L +NQ + P + L+ L+ L L
Sbjct: 84 LTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITD-IDP--LKNLTNLNRLELSS 138
Query: 62 NNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMA 121
N L LTSL+ L N + P LT LE L +S N + +A
Sbjct: 139 NTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDI--SVLA 192
Query: 122 RLCNLRRLYLGGAKLNQEISEILEIFSGCVXXXXXXXXXXXXXXXXXXTDQLGQFKNLDS 181
+L NL L N +IS+I LG NLD
Sbjct: 193 KLTNLESLI----ATNNQISDITP---------------------------LGILTNLDE 221
Query: 182 LDLSNNSIVGPRVLQLYLNKLHGTLSEIHFAN------LTKLSVFLVGANKLTLKVKRDW 235
L L+ N + L N L+ +N LTKL+ +GAN+++
Sbjct: 222 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQIS------N 275
Query: 236 IPPF----QLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLY 291
I P L L L + P + + K+L +L L+ + IS P L +L+
Sbjct: 276 ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLF 333
Query: 292 L-------------------LDLGHNQIHG--ELTNLTKASQL 313
L GHNQI L NLT+ +QL
Sbjct: 334 FSNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQL 376
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 90/343 (26%), Positives = 130/343 (37%), Gaps = 81/343 (23%)
Query: 2 LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
L LV++ ++N Q+ P+AN + LT L L +NQ + P + L+ L+ L L
Sbjct: 84 LTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITD-IDP--LKNLTNLNRLELSS 138
Query: 62 NNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMA 121
N L LTSL+ L N + P LT LE L +S N + +A
Sbjct: 139 NTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDI--SVLA 192
Query: 122 RLCNLRRLYLGGAKLNQEISEILEIFSGCVXXXXXXXXXXXXXXXXXXTDQLGQFKNLDS 181
+L NL L N +IS+I LG NLD
Sbjct: 193 KLTNLESLI----ATNNQISDITP---------------------------LGILTNLDE 221
Query: 182 LDLSNNSIVGPRVLQLYLNKLHGTLSEIHFAN------LTKLSVFLVGANKLTLKVKRDW 235
L L+ N + L N L+ +N LTKL+ +GAN+++
Sbjct: 222 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQIS------N 275
Query: 236 IPPF----QLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLY 291
I P L L L + P + + K+L +L L+ + IS P L +L+
Sbjct: 276 ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLF 333
Query: 292 L-------------------LDLGHNQIHG--ELTNLTKASQL 313
L GHNQI L NLT+ +QL
Sbjct: 334 FYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQL 376
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 90/343 (26%), Positives = 130/343 (37%), Gaps = 81/343 (23%)
Query: 2 LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
L LV++ ++N Q+ P+AN + LT L L +NQ + P + L+ L+ L L
Sbjct: 84 LTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITD-IDP--LKNLTNLNRLELSS 138
Query: 62 NNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMA 121
N L LTSL+ L N + P LT LE L +S N + +A
Sbjct: 139 NTISDI--SALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDI--SVLA 192
Query: 122 RLCNLRRLYLGGAKLNQEISEILEIFSGCVXXXXXXXXXXXXXXXXXXTDQLGQFKNLDS 181
+L NL L N +IS+I LG NLD
Sbjct: 193 KLTNLESLI----ATNNQISDITP---------------------------LGILTNLDE 221
Query: 182 LDLSNNSIVGPRVLQLYLNKLHGTLSEIHFAN------LTKLSVFLVGANKLTLKVKRDW 235
L L+ N + L N L+ +N LTKL+ +GAN+++
Sbjct: 222 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQIS------N 275
Query: 236 IPPF----QLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLY 291
I P L L L + P + + K+L +L L+ + IS P L +L+
Sbjct: 276 ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLF 333
Query: 292 L-------------------LDLGHNQIHG--ELTNLTKASQL 313
L GHNQI L NLT+ +QL
Sbjct: 334 FYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQL 376
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 2/114 (1%)
Query: 2 LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
P L LDLS C++ + S L+TL L+ N + + A+ GLS L L
Sbjct: 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS-GLSSLQKLVAVE 109
Query: 62 NNFQGPIPEGLQNLTSLKHLGLPFNHFSS-SVPKWFDRLTHLEHLSLSYNSLEG 114
N + +L +LK L + N S +P++F LT+LEHL LS N ++
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 50/144 (34%), Gaps = 27/144 (18%)
Query: 2 LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
L SL +L L P+ + TL L+++HN + +P + L+ L L+L
Sbjct: 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158
Query: 62 NNFQGP---------------------------IPEGLQNLTSLKHLGLPFNHFSSSVPK 94
N Q I G LK L L N S
Sbjct: 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDG 218
Query: 95 WFDRLTHLEHLSLSYNSLEGRIPR 118
FDRLT L+ + L N + PR
Sbjct: 219 IFDRLTSLQKIWLHTNPWDCSCPR 242
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 64/132 (48%), Gaps = 25/132 (18%)
Query: 483 LQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTK 542
LQ+LDL+ + +L+ ++T+ TGN I+ S L + G ++ Q+LV +
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLI-LTGNPIQ-SLALGAFSGLSSL--QKLVAVE 109
Query: 543 GVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTG-RIPETIGTMR 601
NL + +F P+G +LK ++ LN+++N+ ++PE +
Sbjct: 110 T---------NLASLENF---------PIG--HLKTLKELNVAHNLIQSFKLPEYFSNLT 149
Query: 602 SLESIDFSVNKF 613
+LE +D S NK
Sbjct: 150 NLEHLDLSSNKI 161
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 2/114 (1%)
Query: 2 LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
P L LDLS C++ + S L+TL L+ N + + A+ GLS L L
Sbjct: 52 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS-GLSSLQKLVAVE 110
Query: 62 NNFQGPIPEGLQNLTSLKHLGLPFNHFSS-SVPKWFDRLTHLEHLSLSYNSLEG 114
N + +L +LK L + N S +P++F LT+LEHL LS N ++
Sbjct: 111 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 50/144 (34%), Gaps = 27/144 (18%)
Query: 2 LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
L SL +L L P+ + TL L+++HN + +P + L+ L L+L
Sbjct: 100 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 159
Query: 62 NNFQGP---------------------------IPEGLQNLTSLKHLGLPFNHFSSSVPK 94
N Q I G LK L L N S
Sbjct: 160 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDG 219
Query: 95 WFDRLTHLEHLSLSYNSLEGRIPR 118
FDRLT L+ + L N + PR
Sbjct: 220 IFDRLTSLQKIWLHTNPWDCSCPR 243
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 64/132 (48%), Gaps = 25/132 (18%)
Query: 483 LQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTK 542
LQ+LDL+ + +L+ ++T+ TGN I+ S L + G ++ Q+LV +
Sbjct: 55 LQVLDLSRCEIQTIEDGAYQSLSHLSTLI-LTGNPIQ-SLALGAFSGLSSL--QKLVAVE 110
Query: 543 GVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTG-RIPETIGTMR 601
NL + +F P+G +LK ++ LN+++N+ ++PE +
Sbjct: 111 T---------NLASLENF---------PIG--HLKTLKELNVAHNLIQSFKLPEYFSNLT 150
Query: 602 SLESIDFSVNKF 613
+LE +D S NK
Sbjct: 151 NLEHLDLSSNKI 162
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 2/114 (1%)
Query: 2 LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
P L LDLS C++ + S L+TL L+ N + + A+ GLS L L
Sbjct: 52 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS-GLSSLQKLVAVE 110
Query: 62 NNFQGPIPEGLQNLTSLKHLGLPFNHFSS-SVPKWFDRLTHLEHLSLSYNSLEG 114
N + +L +LK L + N S +P++F LT+LEHL LS N ++
Sbjct: 111 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 50/144 (34%), Gaps = 27/144 (18%)
Query: 2 LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
L SL +L L P+ + TL L+++HN + +P + L+ L L+L
Sbjct: 100 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 159
Query: 62 NNFQGP---------------------------IPEGLQNLTSLKHLGLPFNHFSSSVPK 94
N Q I G LK L L N S
Sbjct: 160 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDG 219
Query: 95 WFDRLTHLEHLSLSYNSLEGRIPR 118
FDRLT L+ + L N + PR
Sbjct: 220 IFDRLTSLQKIWLHTNPWDCSCPR 243
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 64/132 (48%), Gaps = 25/132 (18%)
Query: 483 LQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTK 542
LQ+LDL+ + +L+ ++T+ TGN I+ S L + G ++ Q+LV +
Sbjct: 55 LQVLDLSRCEIQTIEDGAYQSLSHLSTLI-LTGNPIQ-SLALGAFSGLSSL--QKLVAVE 110
Query: 543 GVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTG-RIPETIGTMR 601
NL + +F P+G +LK ++ LN+++N+ ++PE +
Sbjct: 111 T---------NLASLENF---------PIG--HLKTLKELNVAHNLIQSFKLPEYFSNLT 150
Query: 602 SLESIDFSVNKF 613
+LE +D S NK
Sbjct: 151 NLEHLDLSSNKI 162
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 2/114 (1%)
Query: 2 LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
P L LDLS C++ + S L+TL L+ N + + A+ GLS L L
Sbjct: 53 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS-GLSSLQKLVAVE 111
Query: 62 NNFQGPIPEGLQNLTSLKHLGLPFNHFSS-SVPKWFDRLTHLEHLSLSYNSLEG 114
N + +L +LK L + N S +P++F LT+LEHL LS N ++
Sbjct: 112 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 50/144 (34%), Gaps = 27/144 (18%)
Query: 2 LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
L SL +L L P+ + TL L+++HN + +P + L+ L L+L
Sbjct: 101 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 160
Query: 62 NNFQGP---------------------------IPEGLQNLTSLKHLGLPFNHFSSSVPK 94
N Q I G LK L L N S
Sbjct: 161 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDG 220
Query: 95 WFDRLTHLEHLSLSYNSLEGRIPR 118
FDRLT L+ + L N + PR
Sbjct: 221 IFDRLTSLQKIWLHTNPWDCSCPR 244
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 64/132 (48%), Gaps = 25/132 (18%)
Query: 483 LQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTK 542
LQ+LDL+ + +L+ ++T+ TGN I+ S L + G ++ Q+LV +
Sbjct: 56 LQVLDLSRCEIQTIEDGAYQSLSHLSTLI-LTGNPIQ-SLALGAFSGLSSL--QKLVAVE 111
Query: 543 GVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTG-RIPETIGTMR 601
NL + +F P+G +LK ++ LN+++N+ ++PE +
Sbjct: 112 T---------NLASLENF---------PIG--HLKTLKELNVAHNLIQSFKLPEYFSNLT 151
Query: 602 SLESIDFSVNKF 613
+LE +D S NK
Sbjct: 152 NLEHLDLSSNKI 163
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 11/128 (8%)
Query: 9 DLSNCQLHHFPQLPVANFSTLTTLDLSHNQF----DNSFVPAWVFGLSRLHFLNLGYNNF 64
DLS ++ + ++F+ L L L+ N+ DN+F +GL+ L LNL NF
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAF-----WGLTHLLKLNLS-QNF 334
Query: 65 QGPIPEGL-QNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARL 123
G I + +NL L+ L L +NH + + F L +L+ L+L N L+ RL
Sbjct: 335 LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRL 394
Query: 124 CNLRRLYL 131
+L++++L
Sbjct: 395 TSLQKIWL 402
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 1/114 (0%)
Query: 5 LVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNF 64
L +L L+ +++ + L L+LS N F S L +L L+L YN+
Sbjct: 301 LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNHI 359
Query: 65 QGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPR 118
+ + L +LK L L N S FDRLT L+ + L N + PR
Sbjct: 360 RALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 2/114 (1%)
Query: 2 LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
P L LDLS C++ + S L+TL L+ N + + A+ GLS L L
Sbjct: 53 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS-GLSSLQKLVALE 111
Query: 62 NNFQGPIPEGLQNLTSLKHLGLPFNHFSS-SVPKWFDRLTHLEHLSLSYNSLEG 114
N + +L +LK L + N S +P++F LT+LEHL LS N ++
Sbjct: 112 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 53/144 (36%), Gaps = 30/144 (20%)
Query: 2 LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
L LV L+ + L +FP + + TL L+++HN + +P + L+ L L+L
Sbjct: 104 LQKLVALETNLASLENFP---IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 160
Query: 62 NNFQGP---------------------------IPEGLQNLTSLKHLGLPFNHFSSSVPK 94
N Q I G LK L L N S
Sbjct: 161 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDG 220
Query: 95 WFDRLTHLEHLSLSYNSLEGRIPR 118
FDRLT L+ + L N + PR
Sbjct: 221 IFDRLTSLQKIWLHTNPWDCSCPR 244
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 64/132 (48%), Gaps = 25/132 (18%)
Query: 483 LQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTK 542
LQ+LDL+ + +L+ ++T+ TGN I+ S L + G ++ Q+LV +
Sbjct: 56 LQVLDLSRCEIQTIEDGAYQSLSHLSTLI-LTGNPIQ-SLALGAFSGLSSL--QKLVALE 111
Query: 543 GVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTG-RIPETIGTMR 601
NL + +F P+G +LK ++ LN+++N+ ++PE +
Sbjct: 112 T---------NLASLENF---------PIG--HLKTLKELNVAHNLIQSFKLPEYFSNLT 151
Query: 602 SLESIDFSVNKF 613
+LE +D S NK
Sbjct: 152 NLEHLDLSSNKI 163
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 56/121 (46%), Gaps = 5/121 (4%)
Query: 13 CQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFG-LSRLHFLNLGYNNFQGPIPEG 71
C +P + T LDL N + +P VF L+ L L LG N Q +P G
Sbjct: 14 CYSQGRTSVPTGIPAQTTYLDLETNSLKS--LPNGVFDELTSLTQLYLGGNKLQS-LPNG 70
Query: 72 LQN-LTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLY 130
+ N LTSL +L L N S FD+LT L+ L+L+ N L+ +L L+ L
Sbjct: 71 VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLR 130
Query: 131 L 131
L
Sbjct: 131 L 131
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 60/143 (41%), Gaps = 6/143 (4%)
Query: 4 SLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNN 63
SL +LDLS+ L F L L L++ Q + + LS NL N
Sbjct: 172 SLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLAN 231
Query: 64 FQ-----GPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPR 118
Q GL+ T+L L L +N+ F L L +LSL YN+++ PR
Sbjct: 232 NQLLATSESTFSGLK-WTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPR 290
Query: 119 SMARLCNLRRLYLGGAKLNQEIS 141
S L NLR L L A Q +S
Sbjct: 291 SFYGLSNLRYLSLKRAFTKQSVS 313
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 53/117 (45%), Gaps = 9/117 (7%)
Query: 2 LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPA-------WVFGLSRL 54
L +L LDLSN + + + + L LD HN + A ++ GLS L
Sbjct: 479 LRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARLWKRANPGGPVNFLKGLSHL 538
Query: 55 HFLNLGYNNFQGPIPEGL-QNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYN 110
H LNL N IP G+ +NL LK + L N+ + P FD T L L+L N
Sbjct: 539 HILNLESNGLD-EIPVGVFKNLFELKSINLGLNNLNKLEPFIFDDQTSLRSLNLQKN 594
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 77/194 (39%), Gaps = 22/194 (11%)
Query: 26 FSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPF 85
+ L LDLS N S PA GL RLH L+L Q P + L +L++L L
Sbjct: 79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 138
Query: 86 NHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLN-------Q 138
N + F L +L HL L N + R+ L +L RL L ++ +
Sbjct: 139 NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 198
Query: 139 EISEILEIFSGCVXXXXXXXXXXXXXXXXXXTDQLGQFKNLDSLDLSNNSIV---GPRVL 195
++ ++ ++ T+ L + L L L++N V R L
Sbjct: 199 DLGRLMTLY------------LFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL 246
Query: 196 QLYLNKLHGTLSEI 209
+L K G+ SE+
Sbjct: 247 WAWLQKFRGSSSEV 260
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 56/141 (39%), Gaps = 2/141 (1%)
Query: 5 LVELDLS-NCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNN 63
L +LDLS N QL L TL L P GL+ L +L L N
Sbjct: 82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNA 140
Query: 64 FQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARL 123
Q + ++L +L HL L N SS + F L L+ L L N + P + L
Sbjct: 141 LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200
Query: 124 CNLRRLYLGGAKLNQEISEIL 144
L LYL L+ +E L
Sbjct: 201 GRLMTLYLFANNLSALPTEAL 221
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 77/194 (39%), Gaps = 22/194 (11%)
Query: 26 FSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPF 85
+ L LDLS N S PA GL RLH L+L Q P + L +L++L L
Sbjct: 78 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 137
Query: 86 NHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLN-------Q 138
N + F L +L HL L N + R+ L +L RL L ++ +
Sbjct: 138 NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 197
Query: 139 EISEILEIFSGCVXXXXXXXXXXXXXXXXXXTDQLGQFKNLDSLDLSNNSIV---GPRVL 195
++ ++ ++ T+ L + L L L++N V R L
Sbjct: 198 DLGRLMTLY------------LFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL 245
Query: 196 QLYLNKLHGTLSEI 209
+L K G+ SE+
Sbjct: 246 WAWLQKFRGSSSEV 259
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 56/141 (39%), Gaps = 2/141 (1%)
Query: 5 LVELDLS-NCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNN 63
L +LDLS N QL L TL L P GL+ L +L L N
Sbjct: 81 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNA 139
Query: 64 FQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARL 123
Q + ++L +L HL L N SS + F L L+ L L N + P + L
Sbjct: 140 LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 199
Query: 124 CNLRRLYLGGAKLNQEISEIL 144
L LYL L+ +E L
Sbjct: 200 GRLMTLYLFANNLSALPTEAL 220
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 91/345 (26%), Positives = 132/345 (38%), Gaps = 86/345 (24%)
Query: 2 LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
L LV++ ++N Q+ P+AN + LT L L +NQ + P + L+ L+ L L
Sbjct: 84 LTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITD-IDP--LKNLTNLNRLELSS 138
Query: 62 NNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVP--KWFDRLTHLEHLSLSYNSLEGRIPRS 119
N L LTSL+ L +F + V K LT LE L +S N +
Sbjct: 139 NTISDI--SALSGLTSLQQL-----NFGNQVTDLKPLANLTTLERLDISSNKVSDI--SV 189
Query: 120 MARLCNLRRLYLGGAKLNQEISEILEIFSGCVXXXXXXXXXXXXXXXXXXTDQLGQFKNL 179
+A+L NL L N +IS+I LG NL
Sbjct: 190 LAKLTNLESLI----ATNNQISDITP---------------------------LGILTNL 218
Query: 180 DSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFAN------LTKLSVFLVGANKLTLKVKR 233
D L L+ N + L N L+ +N LTKL+ +GAN+++
Sbjct: 219 DELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQIS----- 273
Query: 234 DWIPPF----QLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQ 289
I P L L L + P + + K+L +L L+ + IS P L +
Sbjct: 274 -NISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQR 330
Query: 290 LYL-------------------LDLGHNQIHG--ELTNLTKASQL 313
L+ L GHNQI L NLT+ +QL
Sbjct: 331 LFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQL 375
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 91/345 (26%), Positives = 132/345 (38%), Gaps = 86/345 (24%)
Query: 2 LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
L LV++ ++N Q+ P+AN + LT L L +NQ + P + L+ L+ L L
Sbjct: 84 LTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITD-IDP--LKNLTNLNRLELSS 138
Query: 62 NNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVP--KWFDRLTHLEHLSLSYNSLEGRIPRS 119
N L LTSL+ L +F + V K LT LE L +S N +
Sbjct: 139 NTISDI--SALSGLTSLQQL-----NFGNQVTDLKPLANLTTLERLDISSNKVSDI--SV 189
Query: 120 MARLCNLRRLYLGGAKLNQEISEILEIFSGCVXXXXXXXXXXXXXXXXXXTDQLGQFKNL 179
+A+L NL L N +IS+I LG NL
Sbjct: 190 LAKLTNLESLI----ATNNQISDITP---------------------------LGILTNL 218
Query: 180 DSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFAN------LTKLSVFLVGANKLTLKVKR 233
D L L+ N + L N L+ +N LTKL+ +GAN+++
Sbjct: 219 DELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQIS----- 273
Query: 234 DWIPPF----QLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQ 289
I P L L L + P + + K+L +L L+ + IS P L +
Sbjct: 274 -NISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQR 330
Query: 290 LYL-------------------LDLGHNQIHG--ELTNLTKASQL 313
L+ L GHNQI L NLT+ +QL
Sbjct: 331 LFFSNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQL 375
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 91/345 (26%), Positives = 131/345 (37%), Gaps = 86/345 (24%)
Query: 2 LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
L LV++ ++N Q+ P+AN + LT L L +NQ + P + L+ L+ L L
Sbjct: 88 LTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITD-IDP--LKNLTNLNRLELSS 142
Query: 62 NNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVP--KWFDRLTHLEHLSLSYNSLEGRIPRS 119
N L LTSL+ L F + V K LT LE L +S N +
Sbjct: 143 NTISDI--SALSGLTSLQQL-----SFGNQVTDLKPLANLTTLERLDISSNKVSDI--SV 193
Query: 120 MARLCNLRRLYLGGAKLNQEISEILEIFSGCVXXXXXXXXXXXXXXXXXXTDQLGQFKNL 179
+A+L NL L N +IS+I LG NL
Sbjct: 194 LAKLTNLESLI----ATNNQISDITP---------------------------LGILTNL 222
Query: 180 DSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFAN------LTKLSVFLVGANKLTLKVKR 233
D L L+ N + L N L+ +N LTKL+ +GAN+++
Sbjct: 223 DELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQIS----- 277
Query: 234 DWIPPF----QLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQ 289
I P L L L + P + + K+L +L L+ + IS P L +
Sbjct: 278 -NISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQR 334
Query: 290 LYL-------------------LDLGHNQIHG--ELTNLTKASQL 313
L+ L GHNQI L NLT+ +QL
Sbjct: 335 LFFANNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQL 379
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 91/345 (26%), Positives = 131/345 (37%), Gaps = 86/345 (24%)
Query: 2 LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
L LV++ ++N Q+ P+AN + LT L L +NQ + P + L+ L+ L L
Sbjct: 89 LTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITD-IDP--LKNLTNLNRLELSS 143
Query: 62 NNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVP--KWFDRLTHLEHLSLSYNSLEGRIPRS 119
N L LTSL+ L F + V K LT LE L +S N +
Sbjct: 144 NTISDI--SALSGLTSLQQL-----SFGNQVTDLKPLANLTTLERLDISSNKVSDI--SV 194
Query: 120 MARLCNLRRLYLGGAKLNQEISEILEIFSGCVXXXXXXXXXXXXXXXXXXTDQLGQFKNL 179
+A+L NL L N +IS+I LG NL
Sbjct: 195 LAKLTNLESLI----ATNNQISDITP---------------------------LGILTNL 223
Query: 180 DSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFAN------LTKLSVFLVGANKLTLKVKR 233
D L L+ N + L N L+ +N LTKL+ +GAN+++
Sbjct: 224 DELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQIS----- 278
Query: 234 DWIPPF----QLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQ 289
I P L L L + P + + K+L +L L+ + IS P L +
Sbjct: 279 -NISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQR 335
Query: 290 LYL-------------------LDLGHNQIHG--ELTNLTKASQL 313
L+ L GHNQI L NLT+ +QL
Sbjct: 336 LFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQL 380
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 9/108 (8%)
Query: 8 LDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYN--NFQ 65
L+L NC+ FP L + + LT + N+ N+F L L FL+L N +F+
Sbjct: 309 LELVNCKFGQFPTLKLKSLKRLT---FTSNKGGNAFSEV---DLPSLEFLDLSRNGLSFK 362
Query: 66 GPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLE 113
G + TSLK+L L FN ++ F L LEHL +++L+
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLK 409
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 123/523 (23%), Positives = 192/523 (36%), Gaps = 73/523 (13%)
Query: 2 LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
P L LDLS C++ + S L+TL L+ N + + A+ GLS L L
Sbjct: 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS-GLSSLQKLVAVE 109
Query: 62 NNFQGPIPEGLQNLTSLKHLGLPFNHFSS-SVPKWFDRLTHLEHLSLSYNSLEG------ 114
N + +L +LK L + N S +P++F LT+LEHL LS N ++
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169
Query: 115 RI----------------PRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVXXXXXXX 158
R+ P + + + + L L + L + C+
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNF-DSLNVMKTCIQGLAGLE 228
Query: 159 XXXXXXXXXXXTDQLGQFKNLDSLDLSNNS----IVGPRVLQLYLNKLHGTLSEIH--FA 212
LG+F+N +L+ + S + + + L L L +I F
Sbjct: 229 VHRLV---------LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN 279
Query: 213 NLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQK--------- 263
LT +S F + + +T++ +D+ F L L +C G L L S K
Sbjct: 280 CLTNVSSFSLVS--VTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKG 337
Query: 264 ----------DLQFLDLFNSGIS--GTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKAS 311
L+FLDL +G+S G + S YL DL N + +N
Sbjct: 338 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL-DLSFNGVITMSSNFLGLE 396
Query: 312 QLSYLSLIANNFSG----SLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFL 367
QL +L +N S+ L NL L++S ++ + F+ + N L+ L +
Sbjct: 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS-HTHTRVAFNGI---FNGLSSLEVLKM 452
Query: 368 DRNILQGK-LPDCWMSYQNLMALDLSNNKFTGNLPTXXXXXXXXXXXXXRKNRLSGTIPI 426
N Q LPD + +NL LDLS + PT N
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 512
Query: 427 LLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNF 469
K SL LD N + + S + L L N+F
Sbjct: 513 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 25/131 (19%)
Query: 483 LQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTK 542
LQ+LDL+ + +L+ ++T+ TGN I+ S L + G ++ Q+LV +
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTL-ILTGNPIQ-SLALGAFSGLSSL--QKLVAVE 109
Query: 543 GVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTG-RIPETIGTMR 601
NL + +F P+G +LK ++ LN+++N+ ++PE +
Sbjct: 110 T---------NLASLENF---------PIG--HLKTLKELNVAHNLIQSFKLPEYFSNLT 149
Query: 602 SLESIDFSVNK 612
+LE +D S NK
Sbjct: 150 NLEHLDLSSNK 160
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 548 YNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESID 607
+ E+ NL +D S+ P +L ++Q LN+S+N F + SL+ +D
Sbjct: 466 FTELRNLT-FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 524
Query: 608 FSVNKFTGEIPQSM----SSLTFLN 628
+S+N Q + SSL FLN
Sbjct: 525 YSLNHIMTSKKQELQHFPSSLAFLN 549
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 49/132 (37%), Gaps = 26/132 (19%)
Query: 8 LDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGP 67
LDLS L H +F L LDLS + A+ LS L L L N Q
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ-SLSHLSTLILTGNPIQSL 91
Query: 68 IPEGLQNLTSLKHL-----------GLPFNHFSS--------------SVPKWFDRLTHL 102
L+SL+ L P H + +P++F LT+L
Sbjct: 92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151
Query: 103 EHLSLSYNSLEG 114
EHL LS N ++
Sbjct: 152 EHLDLSSNKIQS 163
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 66/146 (45%), Gaps = 20/146 (13%)
Query: 4 SLVELDLSNCQLHHFPQLPVA--NFSTLTTLDLSHNQFD----NSFVPAWVFGLSRLHFL 57
S+ L LSN QL ++ LT LDLS+N + +SF AW L +L +
Sbjct: 233 SIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF--AW---LPQLEYF 287
Query: 58 NLGYNNFQGPIPEGLQNLTSLKHLGLP--FNHFS---SSVPKW----FDRLTHLEHLSLS 108
L YNN Q L L ++++L L F S +S+PK F L LEHL++
Sbjct: 288 FLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNME 347
Query: 109 YNSLEGRIPRSMARLCNLRRLYLGGA 134
N + G L NL+ L L +
Sbjct: 348 DNDIPGIKSNMFTGLINLKYLSLSNS 373
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 10/125 (8%)
Query: 2 LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPA-------WVFGLSRL 54
L +L LDLSN + + + L LDL HN + A ++ GLS L
Sbjct: 489 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL 548
Query: 55 HFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYN---S 111
H LNL N F E ++L LK + L N+ ++ F+ L+ L+L N S
Sbjct: 549 HILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 608
Query: 112 LEGRI 116
+E ++
Sbjct: 609 VEKKV 613
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 70/168 (41%), Gaps = 27/168 (16%)
Query: 6 VELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFG-LSRLHFLNLGYNNF 64
V ++++C Q+P + +T L+L+HNQ +PA F S+L L++G+N
Sbjct: 14 VSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRR--LPAANFTRYSQLTSLDVGFNTI 71
Query: 65 QGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHL------------------- 105
PE Q L LK L L N S K F T+L L
Sbjct: 72 SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 131
Query: 106 -----SLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFS 148
LS+N L + +L NL+ L L K+ SE L+IF+
Sbjct: 132 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFA 179
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 449 PSWFGERFSRMVLLILRSNNFDGPLPTELC-DLAFLQILDLADNNLSGTIPNCIHNLTAM 507
P +F + S + +L L SN FD +P E+ DL L+I+DL NNL+ + +N ++
Sbjct: 538 PIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSL 596
Query: 508 ATVN 511
++N
Sbjct: 597 KSLN 600
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 60/143 (41%), Gaps = 6/143 (4%)
Query: 4 SLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNN 63
SL +L+LS+ Q+ F L L L++ Q S L+ NL +N
Sbjct: 182 SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSN 241
Query: 64 FQGPIPE-----GLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPR 118
Q GL+ T+L L L +N+ + F L LE+ L YN+++
Sbjct: 242 SQLSTTSNTTFLGLK-WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH 300
Query: 119 SMARLCNLRRLYLGGAKLNQEIS 141
S+ L N+R L L + Q IS
Sbjct: 301 SLHGLFNVRYLNLKRSFTKQSIS 323
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 66/146 (45%), Gaps = 20/146 (13%)
Query: 4 SLVELDLSNCQLHHFPQLPVA--NFSTLTTLDLSHNQFD----NSFVPAWVFGLSRLHFL 57
S+ L LSN QL ++ LT LDLS+N + +SF AW L +L +
Sbjct: 228 SIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF--AW---LPQLEYF 282
Query: 58 NLGYNNFQGPIPEGLQNLTSLKHLGLP--FNHFS---SSVPKW----FDRLTHLEHLSLS 108
L YNN Q L L ++++L L F S +S+PK F L LEHL++
Sbjct: 283 FLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNME 342
Query: 109 YNSLEGRIPRSMARLCNLRRLYLGGA 134
N + G L NL+ L L +
Sbjct: 343 DNDIPGIKSNMFTGLINLKYLSLSNS 368
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 10/125 (8%)
Query: 2 LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPA-------WVFGLSRL 54
L +L LDLSN + + + L LDL HN + A ++ GLS L
Sbjct: 484 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL 543
Query: 55 HFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYN---S 111
H LNL N F E ++L LK + L N+ ++ F+ L+ L+L N S
Sbjct: 544 HILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 603
Query: 112 LEGRI 116
+E ++
Sbjct: 604 VEKKV 608
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 70/168 (41%), Gaps = 27/168 (16%)
Query: 6 VELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFG-LSRLHFLNLGYNNF 64
V ++++C Q+P + +T L+L+HNQ +PA F S+L L++G+N
Sbjct: 9 VSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRR--LPAANFTRYSQLTSLDVGFNTI 66
Query: 65 QGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHL------------------- 105
PE Q L LK L L N S K F T+L L
Sbjct: 67 SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 126
Query: 106 -----SLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFS 148
LS+N L + +L NL+ L L K+ SE L+IF+
Sbjct: 127 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFA 174
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 449 PSWFGERFSRMVLLILRSNNFDGPLPTELC-DLAFLQILDLADNNLSGTIPNCIHNLTAM 507
P +F + S + +L L SN FD +P E+ DL L+I+DL NNL+ + +N ++
Sbjct: 533 PIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSL 591
Query: 508 ATVN 511
++N
Sbjct: 592 KSLN 595
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 58/122 (47%), Gaps = 18/122 (14%)
Query: 26 FSTLTTLDLSHNQFD----NSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHL 81
++ LT LDLS+N + +SF AW L +L + L YNN Q L L ++++L
Sbjct: 247 WTNLTMLDLSYNNLNVVGNDSF--AW---LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 301
Query: 82 GLP--FNHFS---SSVPKW----FDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLG 132
L F S +S+PK F L LEHL++ N + G L NL+ L L
Sbjct: 302 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS 361
Query: 133 GA 134
+
Sbjct: 362 NS 363
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 10/125 (8%)
Query: 2 LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPA-------WVFGLSRL 54
L +L LDLSN + + + L LDL HN + A ++ GLS L
Sbjct: 479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL 538
Query: 55 HFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYN---S 111
H LNL N F E ++L LK + L N+ ++ F+ L+ L+L N S
Sbjct: 539 HILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 598
Query: 112 LEGRI 116
+E ++
Sbjct: 599 VEKKV 603
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 70/168 (41%), Gaps = 27/168 (16%)
Query: 6 VELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFG-LSRLHFLNLGYNNF 64
V ++++C Q+P + +T L+L+HNQ +PA F S+L L++G+N
Sbjct: 4 VSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRR--LPAANFTRYSQLTSLDVGFNTI 61
Query: 65 QGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHL------------------- 105
PE Q L LK L L N S K F T+L L
Sbjct: 62 SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121
Query: 106 -----SLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFS 148
LS+N L + +L NL+ L L K+ SE L+IF+
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFA 169
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 449 PSWFGERFSRMVLLILRSNNFDGPLPTELC-DLAFLQILDLADNNLSGTIPNCIHNLTAM 507
P +F + S + +L L SN FD +P E+ DL L+I+DL NNL+ + +N ++
Sbjct: 528 PIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSL 586
Query: 508 ATVN 511
++N
Sbjct: 587 KSLN 590
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 2/127 (1%)
Query: 18 FPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTS 77
F +P + + +LDLS N+ + + L L L + + +L S
Sbjct: 17 FTSIPSGLTAAMKSLDLSFNKI-TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGS 75
Query: 78 LKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSM-ARLCNLRRLYLGGAKL 136
L+HL L NH SS WF L+ L++L+L N + S+ L NL+ L +G +
Sbjct: 76 LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET 135
Query: 137 NQEISEI 143
EI I
Sbjct: 136 FSEIRRI 142
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 2/127 (1%)
Query: 18 FPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTS 77
F +P + + +LDLS N+ + + L L L + + +L S
Sbjct: 43 FTSIPSGLTAAMKSLDLSFNKI-TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGS 101
Query: 78 LKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSM-ARLCNLRRLYLGGAKL 136
L+HL L NH SS WF L+ L++L+L N + S+ L NL+ L +G +
Sbjct: 102 LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET 161
Query: 137 NQEISEI 143
EI I
Sbjct: 162 FSEIRRI 168
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 4/102 (3%)
Query: 44 VPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLE 103
VPA + +++ L+L N P +LT L +L L N ++ FD+LT L
Sbjct: 34 VPAGIPTTTQV--LHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLT 91
Query: 104 HLSLSYNSLEGRIPRSM-ARLCNLRRLYLGGAKLNQEISEIL 144
HL+L N L+ IP + L +L +YL + E S+IL
Sbjct: 92 HLALHINQLKS-IPMGVFDNLKSLTHIYLFNNPWDCECSDIL 132
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 9/108 (8%)
Query: 8 LDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYN--NFQ 65
L+L NC+ FP L + + LT + N+ N+F L L FL+L N +F+
Sbjct: 333 LELVNCKFGQFPTLKLKSLKRLT---FTSNKGGNAFSEV---DLPSLEFLDLSRNGLSFK 386
Query: 66 GPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLE 113
G + SLK+L L FN ++ F L LEHL +++L+
Sbjct: 387 GCCSQSDFGTISLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLK 433
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 25/131 (19%)
Query: 483 LQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTK 542
LQ+LDL+ + +L+ ++T+ TGN I+ S L + G ++ Q+LV +
Sbjct: 78 LQVLDLSRCEIQTIEDGAYQSLSHLSTL-ILTGNPIQ-SLALGAFSGLSSL--QKLVAVE 133
Query: 543 GVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTG-RIPETIGTMR 601
NL + +F P+G +LK ++ LN+++N+ ++PE +
Sbjct: 134 T---------NLASLENF---------PIG--HLKTLKELNVAHNLIQSFKLPEYFSNLT 173
Query: 602 SLESIDFSVNK 612
+LE +D S NK
Sbjct: 174 NLEHLDLSSNK 184
Score = 32.3 bits (72), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 548 YNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESID 607
+ E+ NL +D S+ P +L ++Q LN+S+N F + SL+ +D
Sbjct: 490 FTELRNLT-FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 548
Query: 608 FSVNKFTGEIPQSM----SSLTFLN 628
+S+N Q + SSL FLN
Sbjct: 549 YSLNHIMTSKKQELQHFPSSLAFLN 573
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 40/86 (46%)
Query: 27 STLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFN 86
S+L L ++ N F +F+P L L FL+L + P +L+SL+ L + N
Sbjct: 469 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 528
Query: 87 HFSSSVPKWFDRLTHLEHLSLSYNSL 112
+F S + L L+ L S N +
Sbjct: 529 NFFSLDTFPYKCLNSLQVLDYSLNHI 554
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 49/132 (37%), Gaps = 26/132 (19%)
Query: 8 LDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGP 67
LDLS L H +F L LDLS + A+ LS L L L N Q
Sbjct: 57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ-SLSHLSTLILTGNPIQSL 115
Query: 68 IPEGLQNLTSLKHL-----------GLPFNHFSS--------------SVPKWFDRLTHL 102
L+SL+ L P H + +P++F LT+L
Sbjct: 116 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 175
Query: 103 EHLSLSYNSLEG 114
EHL LS N ++
Sbjct: 176 EHLDLSSNKIQS 187
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 45/113 (39%), Gaps = 24/113 (21%)
Query: 2 LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAW-------------- 47
P L LDLS C++ + S L+TL L+ N + + A+
Sbjct: 75 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 134
Query: 48 ---------VFGLSRLHFLNLGYNNFQG-PIPEGLQNLTSLKHLGLPFNHFSS 90
+ L L LN+ +N Q +PE NLT+L+HL L N S
Sbjct: 135 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 552 LNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIF-TGRIPET--IGTMRSLESIDF 608
L+L+++++ S +L + L A+Q LNL N F G I +T + T+ LE +
Sbjct: 424 LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483
Query: 609 SVNKFTGEIPQSMSSLTFLNHLNLSNNYLTG 639
S + + +SL +NH++LS+N LT
Sbjct: 484 SFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS 514
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 57/125 (45%), Gaps = 11/125 (8%)
Query: 2 LPSLVELDLS--NCQLHHFPQLPVANFSTLTTLDLSHNQ----FDNSFVPAWVFGLSRLH 55
L +L ELDLS + + L + N S L +L+LS+N+ +F L L
Sbjct: 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA 408
Query: 56 FLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSL-EG 114
F L + Q P QNL LK L L + S + FD L L+HL+L N +G
Sbjct: 409 FTRLKVKDAQSP----FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG 464
Query: 115 RIPRS 119
I ++
Sbjct: 465 NIQKT 469
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 54/126 (42%), Gaps = 4/126 (3%)
Query: 26 FSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPF 85
FS L LDL+ S +P+ + GLS L L L N F+ N SL HL +
Sbjct: 277 FSGLQELDLTATHL--SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334
Query: 86 NHFSSSV-PKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEIL 144
N + + L +L L LS++ +E ++ +L NL L N+ +S
Sbjct: 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL-QLRNLSHLQSLNLSYNEPLSLKT 393
Query: 145 EIFSGC 150
E F C
Sbjct: 394 EAFKEC 399
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 550 EILNLVRIIDFSKNLF--SGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESID 607
E L +R +D S + S + L NL +QSLNLSYN E LE +D
Sbjct: 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD 406
Query: 608 FSVNKFTGEIPQS-MSSLTFLNHLNLSNNYL 637
+ + + QS +L L LNLS++ L
Sbjct: 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL 437
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 558 IDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTG--RIPETIGTMRSLESIDFSVNKFTG 615
++F++N+F+ ++ G + LK +Q+L L N ++ M SLE++D S+N
Sbjct: 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS 417
Query: 616 EI-PQSMSSLTFLNHLNLSNNYLTGKI 641
++ + + LNLS+N LTG +
Sbjct: 418 HAYDRTCAWAESILVLNLSSNMLTGSV 444
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 46/107 (42%), Gaps = 5/107 (4%)
Query: 3 PSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYN 62
P L LS + ++ S L L LSHN+ + ++F L +L++ +N
Sbjct: 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFN-QDLEYLDVSHN 110
Query: 63 NFQGPIPEGLQNLTSLKHLGLPFNHFSS-SVPKWFDRLTHLEHLSLS 108
Q + SL+HL L FN F V K F LT L L LS
Sbjct: 111 RLQNI---SCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLS 154
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 23/119 (19%)
Query: 21 LPVANFSTLTTLDLSHNQFDNSFVP---AW-----VFGLS--------------RLHFLN 58
L N S+L TLD+S N ++ AW V LS ++ L+
Sbjct: 397 LMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLD 456
Query: 59 LGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIP 117
L +NN IP+ + +L +L+ L + N S FDRLT L+++ L N + P
Sbjct: 457 L-HNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 51/131 (38%), Gaps = 26/131 (19%)
Query: 8 LDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGP 67
+DLS L +NFS L LDLS + + AW GL L L L N Q
Sbjct: 37 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAW-HGLHHLSNLILTGNPIQSF 95
Query: 68 IPEGLQNLTSLKHL-----------GLPFNHF--------------SSSVPKWFDRLTHL 102
P LTSL++L P S +P +F LT+L
Sbjct: 96 SPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNL 155
Query: 103 EHLSLSYNSLE 113
H+ LSYN ++
Sbjct: 156 VHVDLSYNYIQ 166
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 61/135 (45%), Gaps = 10/135 (7%)
Query: 8 LDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYN--NFQ 65
L + CQL FP L + +LT L+ N+ SF L L +L+L N +F
Sbjct: 312 LSIIRCQLKQFPTLDLPFLKSLT---LTMNKGSISFKKV---ALPSLSYLDLSRNALSFS 365
Query: 66 GPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCN 125
G SL+HL L FN + + F L L+HL +++L+ R+ A L
Sbjct: 366 GCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLK-RVTEFSAFLSL 423
Query: 126 LRRLYLGGAKLNQEI 140
+ LYL + N +I
Sbjct: 424 EKLLYLDISYTNTKI 438
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 32/72 (44%)
Query: 2 LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
L SL L +L P+ TL L+++HN + +PA+ L+ L ++L Y
Sbjct: 103 LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY 162
Query: 62 NNFQGPIPEGLQ 73
N Q LQ
Sbjct: 163 NYIQTITVNDLQ 174
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 51/131 (38%), Gaps = 26/131 (19%)
Query: 8 LDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGP 67
+DLS L +NFS L LDLS + + AW GL L L L N Q
Sbjct: 32 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAW-HGLHHLSNLILTGNPIQSF 90
Query: 68 IPEGLQNLTSLKHL-----------GLPFNHF--------------SSSVPKWFDRLTHL 102
P LTSL++L P S +P +F LT+L
Sbjct: 91 SPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNL 150
Query: 103 EHLSLSYNSLE 113
H+ LSYN ++
Sbjct: 151 VHVDLSYNYIQ 161
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 61/135 (45%), Gaps = 10/135 (7%)
Query: 8 LDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYN--NFQ 65
L + CQL FP L + +LT L+ N+ SF L L +L+L N +F
Sbjct: 307 LSIIRCQLKQFPTLDLPFLKSLT---LTMNKGSISFKKV---ALPSLSYLDLSRNALSFS 360
Query: 66 GPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCN 125
G SL+HL L FN + + F L L+HL +++L+ R+ A L
Sbjct: 361 GCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLK-RVTEFSAFLSL 418
Query: 126 LRRLYLGGAKLNQEI 140
+ LYL + N +I
Sbjct: 419 EKLLYLDISYTNTKI 433
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 32/72 (44%)
Query: 2 LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
L SL L +L P+ TL L+++HN + +PA+ L+ L ++L Y
Sbjct: 98 LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY 157
Query: 62 NNFQGPIPEGLQ 73
N Q LQ
Sbjct: 158 NYIQTITVNDLQ 169
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 2/108 (1%)
Query: 5 LVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNF 64
+ EL L Q P+ ++N+ LT +DLS+N+ ++ +++L L L YN
Sbjct: 33 VTELYLDGNQFTLVPK-ELSNYKHLTLIDLSNNRI-STLSNQSFSNMTQLLTLILSYNRL 90
Query: 65 QGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSL 112
+ P L SL+ L L N S F+ L+ L HL++ N L
Sbjct: 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 39/100 (39%), Gaps = 2/100 (2%)
Query: 13 CQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGL 72
C LP +T L L NQF + VP + L ++L N +
Sbjct: 17 CSNKGLKVLPKGIPRDVTELYLDGNQF--TLVPKELSNYKHLTLIDLSNNRISTLSNQSF 74
Query: 73 QNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSL 112
N+T L L L +N P+ FD L L LSL N +
Sbjct: 75 SNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDI 114
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 32/66 (48%)
Query: 68 IPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLR 127
+P+ L N L + L N S+ + F +T L L LSYN L PR+ L +LR
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 128 RLYLGG 133
L L G
Sbjct: 106 LLSLHG 111
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Query: 2 LPSLVELDLSNCQLHHFPQLPVANFSTLTTLD-LSHNQFDNSFVPAWVFGLSRLHFLNLG 60
+PSL LDL +L + A F L L L+ + +P + L RL L L
Sbjct: 130 VPSLRRLDLG--ELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPN-LTALVRLEELELS 186
Query: 61 YNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSL 112
N P Q LTSL+ L L ++ FD L LE L+LS+N+L
Sbjct: 187 GNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 43/101 (42%), Gaps = 2/101 (1%)
Query: 51 LSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYN 110
L L L L N + L SL L L N ++ + F+ L+ L L L N
Sbjct: 58 LRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNN 117
Query: 111 SLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCV 151
+E + R+ +LRRL LG K + ISE F G V
Sbjct: 118 PIESIPSYAFNRVPSLRRLDLGELKRLEYISEA--AFEGLV 156
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 49/111 (44%), Gaps = 10/111 (9%)
Query: 5 LVELDLSNCQLHHFP---QLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
L +L+L C+L LPV L TLDLSHNQ + +P L L L++ +
Sbjct: 58 LTQLNLDRCELTKLQVDGTLPV-----LGTLDLSHNQLQS--LPLLGQTLPALTVLDVSF 110
Query: 62 NNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSL 112
N L+ L L+ L L N + P LE LSL+ N+L
Sbjct: 111 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 161
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 6/107 (5%)
Query: 14 QLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFG-LSRLHFLNLGYNNFQGPIPEGL 72
+L H P + + L+ L+L N + +P+ +F L L + G N + +P G+
Sbjct: 134 RLTHIPANLLTDMRNLSHLELRANIEE---MPSHLFDDLENLESIEFGSNKLRQ-MPRGI 189
Query: 73 -QNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPR 118
+ LK L L N S FDRLT L+ + L N + PR
Sbjct: 190 FGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 236
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 48/111 (43%), Gaps = 10/111 (9%)
Query: 5 LVELDLSNCQLHHFP---QLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
L +L+L C+L LPV L TLDLSHNQ + +P L L L++ +
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPV-----LGTLDLSHNQLQS--LPLLGQTLPALTVLDVSF 109
Query: 62 NNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSL 112
N L+ L L+ L L N + P LE LSL+ N L
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 57/134 (42%)
Query: 12 NCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEG 71
+C P +P + S LDLSHN L+ LH L L +N+ E
Sbjct: 24 SCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEA 83
Query: 72 LQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYL 131
+ +L++L L NH + F L LE L L N + + + L++LYL
Sbjct: 84 FVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYL 143
Query: 132 GGAKLNQEISEILE 145
++++ E+++
Sbjct: 144 SQNQISRFPVELIK 157
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 48/111 (43%), Gaps = 10/111 (9%)
Query: 5 LVELDLSNCQLHHFP---QLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
L +L+L C+L LPV L TLDLSHNQ + +P L L L++ +
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPV-----LGTLDLSHNQLQS--LPLLGQTLPALTVLDVSF 109
Query: 62 NNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSL 112
N L+ L L+ L L N + P LE LSL+ N L
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 48/111 (43%), Gaps = 10/111 (9%)
Query: 5 LVELDLSNCQLHHFP---QLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
L +L+L C+L LPV L TLDLSHNQ + +P L L L++ +
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPV-----LGTLDLSHNQLQS--LPLLGQTLPALTVLDVSF 109
Query: 62 NNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSL 112
N L+ L L+ L L N + P LE LSL+ N L
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 48/111 (43%), Gaps = 10/111 (9%)
Query: 5 LVELDLSNCQLHHFP---QLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
L +L+L C+L LPV L TLDLSHNQ + +P L L L++ +
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPV-----LGTLDLSHNQLQS--LPLLGQTLPALTVLDVSF 109
Query: 62 NNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSL 112
N L+ L L+ L L N + P LE LSL+ N L
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 49/111 (44%), Gaps = 10/111 (9%)
Query: 5 LVELDLSNCQLHHFP---QLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
L +L+L C+L LPV L TLDLSHNQ + +P L L L++ +
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPV-----LGTLDLSHNQLQS--LPLLGQTLPALTVLDVSF 109
Query: 62 NNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSL 112
N L+ L L+ L L N + P LE LSL+ N+L
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Query: 2 LPSLVELDLSNCQLHHFPQLPVANFSTLTTLD-LSHNQFDNSFVPAWVFGLSRLHFLNLG 60
+PSL LDL +L + A F L L L+ + +P + L RL L L
Sbjct: 130 VPSLRRLDLG--ELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPN-LTALVRLEELELS 186
Query: 61 YNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSL 112
N P Q LTSL+ L L ++ FD L LE L+LS+N+L
Sbjct: 187 GNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 43/101 (42%), Gaps = 2/101 (1%)
Query: 51 LSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYN 110
L L L L N + L SL L L N ++ + F+ L+ L L L N
Sbjct: 58 LRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNN 117
Query: 111 SLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCV 151
+E + R+ +LRRL LG K + ISE F G V
Sbjct: 118 PIESIPSYAFNRVPSLRRLDLGELKRLEYISEA--AFEGLV 156
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 48/111 (43%), Gaps = 10/111 (9%)
Query: 5 LVELDLSNCQLHHFP---QLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
L +L+L C+L LPV L TLDLSHNQ + +P L L L++ +
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPV-----LGTLDLSHNQLQS--LPLLGQTLPALTVLDVSF 109
Query: 62 NNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSL 112
N L+ L L+ L L N + P LE LSL+ N L
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDL 160
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 5/136 (3%)
Query: 4 SLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNS-FVPAWVFGLSRLHFLNLGYN 62
SLVEL + + ++ P+ + + +++ N +NS F P GL +L++L +
Sbjct: 124 SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA 182
Query: 63 NFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMAR 122
G IP+ L +L L L N + + R + L L L +N + S++
Sbjct: 183 KLTG-IPKDLPE--TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF 239
Query: 123 LCNLRRLYLGGAKLNQ 138
L LR L+L KL++
Sbjct: 240 LPTLRELHLDNNKLSR 255
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Query: 26 FSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLP 84
+ + ++L N +S + F G+ +L ++ + N IP+GL SL L L
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLD 200
Query: 85 FNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKL 136
N + L +L L LS+NS+ S+A +LR L+L KL
Sbjct: 201 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Query: 26 FSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLP 84
+ + ++L N +S + F G+ +L ++ + N IP+GL SL L L
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLD 200
Query: 85 FNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKL 136
N + L +L L LS+NS+ S+A +LR L+L KL
Sbjct: 201 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 55/141 (39%), Gaps = 2/141 (1%)
Query: 5 LVELDLS-NCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNN 63
L +LDLS N QL L TL L P GL+ L +L L NN
Sbjct: 81 LEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNN 139
Query: 64 FQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARL 123
Q ++L +L HL L N S F L L+ L L N + P + L
Sbjct: 140 LQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDL 199
Query: 124 CNLRRLYLGGAKLNQEISEIL 144
L LYL L+ +E+L
Sbjct: 200 GRLMTLYLFANNLSMLPAEVL 220
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 8/128 (6%)
Query: 23 VANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLG 82
+ + S L L +SHN+ + + F L +L+L +N + +LKHL
Sbjct: 41 ILSLSKLRILIISHNRIQYLDISVFKFN-QELEYLDLSHNKL---VKISCHPTVNLKHLD 96
Query: 83 LPFNHFSS-SVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRR--LYLGGAKLNQE 139
L FN F + + K F ++ L+ L LS LE +A L N+ + L LG +E
Sbjct: 97 LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHL-NISKVLLVLGETYGEKE 155
Query: 140 ISEILEIF 147
E L+ F
Sbjct: 156 DPEGLQDF 163
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 53 RLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSL 112
R+ L+L N + IP+ + L +L+ L + N S FDRLT L+ + L N
Sbjct: 422 RIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480
Query: 113 EGRIPR 118
+ PR
Sbjct: 481 DCSCPR 486
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 10/103 (9%)
Query: 550 EILNLVRIIDFSKNLF--SGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESID 607
E L ++ +D S N S + L NL +Q+LNLS+N G + LE +D
Sbjct: 344 EKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLD 403
Query: 608 FSVNKFTGEIPQS-MSSLTFLNHLNL-------SNNYLTGKIP 642
+ + PQS +L FL LNL SN +L +P
Sbjct: 404 LAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLP 446
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 548 YNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESID 607
+ E+ NL +D S+ P +L ++Q LN+S+N F + SL+ +D
Sbjct: 171 FTELRNLT-FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 229
Query: 608 FSVNKFTGEIPQSM----SSLTFLN 628
+S+N Q + SSL FLN
Sbjct: 230 YSLNHIMTSKKQELQHFPSSLAFLN 254
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%)
Query: 27 STLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFN 86
S+L L ++ N F +F+P L L FL+L + P +L+SL+ L + N
Sbjct: 150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209
Query: 87 HFSS 90
+F S
Sbjct: 210 NFFS 213
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 13 CQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFG-LSRLHFLNLGYN--NFQGPIP 69
C +P S+ T L+L N+ + +P VF L++L L+L N +F+G
Sbjct: 14 CNSKGLTSVPTGIPSSATRLELESNKLQS--LPHGVFDKLTQLTKLSLSSNGLSFKGCCS 71
Query: 70 EGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLE 113
+ TSLK+L L FN ++ F L LEHL +++L+
Sbjct: 72 QSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLK 114
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 80/207 (38%), Gaps = 27/207 (13%)
Query: 48 VFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPK-WFDRLTHLEHLS 106
+ LSR H + F G L NL +L+ F++ +++P F L+ L+ L
Sbjct: 92 ILQLSRNHIRTIEIGAFNG-----LANLNTLEL----FDNRLTTIPNGAFVYLSKLKELW 142
Query: 107 LSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVXXXXXXXXXXXXXXX 166
L N +E + R+ +LRRL LG K ISE G
Sbjct: 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE------GAFEGLSNLRYLNLAMCN 196
Query: 167 XXXTDQLGQFKNLDSLDLSNN--SIVGPRVLQ--LYLNKLHGTLSEIH------FANLTK 216
L LD LDLS N S + P Q ++L KL S+I F NL
Sbjct: 197 LREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS 256
Query: 217 LSVFLVGANKLTLKVKRDWIPPFQLIE 243
L + N LTL + D P +E
Sbjct: 257 LVEINLAHNNLTL-LPHDLFTPLHHLE 282
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 18/123 (14%)
Query: 9 DLSNCQLHHFPQLPVANFSTLTTLDLSHNQF----DNSFVPAWVFGLSRLHFLNLGYNNF 64
DLS ++ + ++F+ L L L+ N+ DN+F +GL+ L L L N
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAF-----WGLTHLKELALDTNQL 335
Query: 65 QGPIPEGL-QNLTSLKHLGLPFNHFSSSVP------KWFDRLTHLEHLSLSYNSLEGRIP 117
+ +P+G+ LTSL+ + L N + S P +W ++ + E S + S G+
Sbjct: 336 KS-VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGS-AKCSGSGKPV 393
Query: 118 RSM 120
RS+
Sbjct: 394 RSI 396
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 70/189 (37%), Gaps = 59/189 (31%)
Query: 2 LPSLVELDLSNCQLHHFPQLPVANFS---------------------TLTTLDLSHNQFD 40
+ S+ E DL N Q HF L +++ + ++TTLDLS N F
Sbjct: 166 VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFK 225
Query: 41 NSFVPAWVFGLSRLHFLNL------------GYNNFQGP---IPEGLQ------------ 73
S + ++ +L G+ NF+ P +GL+
Sbjct: 226 ESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKS 285
Query: 74 -----------NLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMAR 122
+ T L+ L L N + F LTHL+ L+L N L+ R
Sbjct: 286 KIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLKSVPDGIFDR 345
Query: 123 LCNLRRLYL 131
L +L++++L
Sbjct: 346 LTSLQKIWL 354
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Query: 24 ANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGL 83
L TLDLSHNQ + +P L L L++ +N L+ L L+ L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 84 PFNHFSSSVPKWFDRLTHLEHLSLSYNSL 112
N + P LE LSL+ N+L
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNL 160
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Query: 24 ANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGL 83
L TLDLSHNQ + +P L L L++ +N L+ L L+ L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 84 PFNHFSSSVPKWFDRLTHLEHLSLSYNSL 112
N + P LE LSL+ N+L
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNL 160
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Query: 24 ANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGL 83
L TLDLSHNQ + +P L L L++ +N L+ L L+ L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 84 PFNHFSSSVPKWFDRLTHLEHLSLSYNSL 112
N + P LE LSL+ N+L
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNL 160
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 44/109 (40%), Gaps = 1/109 (0%)
Query: 4 SLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNN 63
S+ LDLS+ + L L+L++N+ N +GL L LNL YN
Sbjct: 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKI-NKIADEAFYGLDNLQVLNLSYNL 325
Query: 64 FQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSL 112
L + ++ L NH + + F L L+ L L N+L
Sbjct: 326 LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 6/107 (5%)
Query: 31 TLDLSHNQFDNSFVPAWVFGLSRLHFL---NLGYNNFQGPIPEGLQNL--TSLKHLGLPF 85
T+D++ N F N+ + F L H + G++N + P L +S++HL L
Sbjct: 217 TVDITGN-FSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSH 275
Query: 86 NHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLG 132
S + F+ L L+ L+L+YN + + L NL+ L L
Sbjct: 276 GFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 65/170 (38%), Gaps = 14/170 (8%)
Query: 483 LQILDLADN----NLSGTIPNCIHNLTAMATVNPFTGNAIEYSF------PLNSTIGPGT 532
L+ILD++ N +++G N I A + + + F N+ G
Sbjct: 206 LEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLAR 265
Query: 533 VTEQELVVTKGVAADYN----EILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNI 588
+ + L ++ G N E L +++++ + N + L +Q LNLSYN+
Sbjct: 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL 325
Query: 589 FTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLT 638
+ + ID N Q+ L L L+L +N LT
Sbjct: 326 LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375
>pdb|3F3X|A Chain A, Crystal Structure Of The Transcriptional Regulator Bldr
From Sulfolobus Solfataricus
Length = 144
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 577 KAVQSLNLSYNIFTGRIPE---TIGTMRSLESIDFSVNKFTGEIPQSMSSL 624
+ +Q +N I+ G I E +G + +L +DFS+ K T E P+SM L
Sbjct: 6 EKLQLMNTIAKIYRGSIKEFNNRLGKLMNLSYLDFSILKATSEEPRSMVYL 56
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 8/117 (6%)
Query: 30 TTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGL-QNLTSLKHLGLPFNHF 88
TT+D S + VP + +++ +L Y+N + G+ LT L L L N
Sbjct: 12 TTVDCSGKSL--ASVPTGIPTTTQVLYL---YDNQITKLEPGVFDRLTQLTRLDLDNNQL 66
Query: 89 SSSVPKWFDRLTHLEHLSLSYNSLEGRIPR-SMARLCNLRRLYLGGAKLNQEISEIL 144
+ FD+LT L LSL+ N L+ IPR + L +L ++L + S+IL
Sbjct: 67 TVLPAGVFDKLTQLTQLSLNDNQLKS-IPRGAFDNLKSLTHIWLLNNPWDCACSDIL 122
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 8/117 (6%)
Query: 30 TTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGL-QNLTSLKHLGLPFNHF 88
TT+D S + VP + +++ +L Y+N + G+ LT L L L N
Sbjct: 20 TTVDCSGKSL--ASVPTGIPTTTQVLYL---YDNQITKLEPGVFDRLTQLTRLDLDNNQL 74
Query: 89 SSSVPKWFDRLTHLEHLSLSYNSLEGRIPR-SMARLCNLRRLYLGGAKLNQEISEIL 144
+ FD+LT L LSL+ N L+ IPR + L +L ++L + S+IL
Sbjct: 75 TVLPAGVFDKLTQLTQLSLNDNQLKS-IPRGAFDNLKSLTHIWLLNNPWDCACSDIL 130
>pdb|2I75|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase N4
(Ptpn4)
Length = 320
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 47/116 (40%), Gaps = 23/116 (19%)
Query: 557 IIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGE 616
+I ++ L +GT+ LT + + ++P+ I S N++
Sbjct: 35 MIQLAEGLITGTV---LTQFDQLYRKKPGMTMSCAKLPQNI-----------SKNRYRDI 80
Query: 617 IPQSMSSLTFLNHLNLSN-NYLTGKIPSSTQLQSFNASCFLGNNLCGAPLPKNCTD 671
P + + + + N NY+ +IPSS+ + + A C PLP CTD
Sbjct: 81 SPYDATRVILKGNEDYINANYINMEIPSSSIINQYIA--------CQGPLPHTCTD 128
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 21 LPVANFSTLTTLDLSHNQF---DNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTS 77
+P + +LDLS+N+ NS + V L L L N + +L S
Sbjct: 46 IPSGLTEAVKSLDLSNNRITYISNSDLQRCV----NLQALVLTSNGINTIEEDSFSSLGS 101
Query: 78 LKHLGLPFNHFSSSVPKWFDRLTHLEHLSL 107
L+HL L +N+ S+ WF L+ L L+L
Sbjct: 102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 21 LPVANFSTLTTLDLSHNQF---DNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTS 77
+P + +LDLS+N+ NS + V L L L N + +L S
Sbjct: 20 IPSGLTEAVKSLDLSNNRITYISNSDLQRCV----NLQALVLTSNGINTIEEDSFSSLGS 75
Query: 78 LKHLGLPFNHFSSSVPKWFDRLTHLEHLSL 107
L+HL L +N+ S+ WF L+ L L+L
Sbjct: 76 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 105
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 8/117 (6%)
Query: 30 TTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGL-QNLTSLKHLGLPFNHF 88
TT+D S + VP + +++ +L Y+N + G+ LT L L L N
Sbjct: 12 TTVDCSGKSL--ASVPTGIPTTTQVLYL---YDNRITKLEPGVFDRLTQLTRLDLDNNQL 66
Query: 89 SSSVPKWFDRLTHLEHLSLSYNSLEGRIPR-SMARLCNLRRLYLGGAKLNQEISEIL 144
+ FD+LT L LSL+ N L+ IPR + L +L ++L + S+IL
Sbjct: 67 TVLPAGVFDKLTQLTQLSLNDNQLKS-IPRGAFDNLRSLTHIWLLNNPWDCACSDIL 122
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 65/186 (34%), Gaps = 45/186 (24%)
Query: 68 IPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLR 127
+PEG+ T L LG N + F HLE L L+ N + P + L NLR
Sbjct: 26 VPEGIPTETRLLDLGK--NRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLR 83
Query: 128 RLYLGGAKLNQEISEILEIFSGCVXXXXXXXXXXXXXXXXXXTDQLGQFKNLDSLDLSNN 187
L G + N+ L +F+G NL LD+S N
Sbjct: 84 TL---GLRSNRLKLIPLGVFTG--------------------------LSNLTKLDISEN 114
Query: 188 SIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLR 247
IV L + F +L L VG N L R + L +L L
Sbjct: 115 KIV--------------ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLE 160
Query: 248 SCDVGS 253
C++ S
Sbjct: 161 KCNLTS 166
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,579,332
Number of Sequences: 62578
Number of extensions: 727455
Number of successful extensions: 2218
Number of sequences better than 100.0: 97
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 1429
Number of HSP's gapped (non-prelim): 436
length of query: 695
length of database: 14,973,337
effective HSP length: 106
effective length of query: 589
effective length of database: 8,340,069
effective search space: 4912300641
effective search space used: 4912300641
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)