Query 036216
Match_columns 695
No_of_seqs 563 out of 3949
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 10:34:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036216.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036216hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1E-61 2.2E-66 566.8 41.3 540 27-664 69-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.6E-56 3.5E-61 523.0 39.0 535 3-636 69-605 (968)
3 KOG4194 Membrane glycoprotein 100.0 2E-38 4.4E-43 312.7 9.6 388 6-441 55-448 (873)
4 KOG4194 Membrane glycoprotein 100.0 3.7E-38 7.9E-43 310.9 9.8 389 55-610 55-448 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 1.6E-41 3.5E-46 320.2 -13.7 265 27-323 45-309 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 2.6E-40 5.5E-45 312.1 -13.9 133 48-190 41-173 (565)
7 KOG0618 Serine/threonine phosp 100.0 1.2E-36 2.6E-41 316.3 -5.2 480 7-636 2-487 (1081)
8 KOG0618 Serine/threonine phosp 100.0 2.9E-36 6.3E-41 313.4 -4.0 484 5-635 23-510 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 4.9E-34 1.1E-38 283.7 -1.7 271 259-633 122-394 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 8.5E-33 1.8E-37 275.0 -3.4 359 24-507 4-364 (1255)
11 KOG4237 Extracellular matrix p 99.9 2.7E-26 5.8E-31 217.3 -1.9 412 151-635 65-498 (498)
12 KOG4237 Extracellular matrix p 99.9 1.9E-26 4.2E-31 218.3 -3.4 283 4-301 68-359 (498)
13 PLN03210 Resistant to P. syrin 99.9 3.8E-22 8.2E-27 233.5 25.8 223 265-500 591-821 (1153)
14 PLN03210 Resistant to P. syrin 99.9 9.4E-22 2E-26 230.2 26.0 161 18-188 549-715 (1153)
15 PRK15387 E3 ubiquitin-protein 99.9 4.4E-21 9.6E-26 207.7 16.4 262 290-644 203-464 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 7.9E-21 1.7E-25 205.8 15.5 266 264-623 202-467 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 4.5E-19 9.8E-24 193.7 11.5 201 265-494 180-380 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 5.9E-19 1.3E-23 192.8 11.9 245 313-638 180-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 4.8E-19 1E-23 180.8 0.6 160 334-494 25-206 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 2.3E-18 5E-23 175.7 3.6 286 7-322 2-318 (319)
21 KOG0617 Ras suppressor protein 99.7 1.9E-19 4.2E-24 151.2 -5.2 108 25-136 31-139 (264)
22 KOG0617 Ras suppressor protein 99.7 4.1E-18 8.9E-23 143.3 -3.1 183 406-643 31-217 (264)
23 PLN03150 hypothetical protein; 99.3 2.2E-12 4.9E-17 141.2 8.3 116 555-670 420-538 (623)
24 KOG0532 Leucine-rich repeat (L 99.3 6.3E-14 1.4E-18 140.2 -5.0 195 383-636 74-271 (722)
25 PF14580 LRR_9: Leucine-rich r 99.3 8.8E-12 1.9E-16 111.0 6.7 123 9-138 3-127 (175)
26 COG4886 Leucine-rich repeat (L 99.2 1E-11 2.2E-16 130.4 7.7 123 364-492 97-220 (394)
27 KOG0532 Leucine-rich repeat (L 99.2 3.1E-13 6.7E-18 135.3 -4.6 195 359-612 74-271 (722)
28 PF14580 LRR_9: Leucine-rich r 99.2 1.5E-11 3.3E-16 109.6 4.1 124 3-132 19-148 (175)
29 COG4886 Leucine-rich repeat (L 99.2 4.3E-11 9.4E-16 125.6 7.4 129 360-494 116-245 (394)
30 PLN03150 hypothetical protein; 99.1 8.6E-11 1.9E-15 128.8 8.3 114 482-643 419-533 (623)
31 KOG1909 Ran GTPase-activating 99.1 1.8E-11 3.9E-16 116.0 0.5 250 332-637 30-310 (382)
32 KOG3207 Beta-tubulin folding c 99.1 1.8E-11 4E-16 119.1 0.4 144 350-494 111-259 (505)
33 KOG1259 Nischarin, modulator o 99.1 3.5E-11 7.5E-16 111.2 1.1 84 555-641 331-415 (490)
34 KOG1259 Nischarin, modulator o 99.1 3.1E-11 6.7E-16 111.5 0.5 133 75-231 283-415 (490)
35 KOG1909 Ran GTPase-activating 99.0 1.4E-10 3.1E-15 109.9 2.8 37 49-85 27-67 (382)
36 KOG3207 Beta-tubulin folding c 99.0 1.3E-10 2.8E-15 113.3 2.4 184 238-444 120-313 (505)
37 KOG4658 Apoptotic ATPase [Sign 99.0 3.5E-10 7.7E-15 126.5 5.6 128 4-135 524-653 (889)
38 KOG4658 Apoptotic ATPase [Sign 99.0 1.2E-09 2.7E-14 122.2 8.1 112 23-138 519-632 (889)
39 PF13855 LRR_8: Leucine rich r 98.9 7.6E-10 1.6E-14 80.9 3.9 61 577-637 1-61 (61)
40 PF13855 LRR_8: Leucine rich r 98.9 1.7E-09 3.8E-14 79.0 3.8 61 553-613 1-61 (61)
41 KOG0531 Protein phosphatase 1, 98.8 8.5E-10 1.9E-14 115.8 -0.9 128 3-138 72-200 (414)
42 KOG0531 Protein phosphatase 1, 98.7 1.8E-09 4E-14 113.3 0.3 173 2-190 94-268 (414)
43 KOG2120 SCF ubiquitin ligase, 98.4 7.7E-09 1.7E-13 96.0 -5.1 134 52-188 185-324 (419)
44 KOG4579 Leucine-rich repeat (L 98.4 2E-08 4.4E-13 82.2 -2.8 84 556-643 56-140 (177)
45 KOG1859 Leucine-rich repeat pr 98.3 1.2E-08 2.5E-13 105.9 -7.0 128 77-228 165-292 (1096)
46 KOG2982 Uncharacterized conser 98.3 1.2E-07 2.6E-12 88.2 0.2 42 261-302 222-263 (418)
47 KOG1859 Leucine-rich repeat pr 98.3 9.8E-09 2.1E-13 106.5 -8.1 126 5-137 166-292 (1096)
48 KOG2120 SCF ubiquitin ligase, 98.2 5.3E-08 1.1E-12 90.5 -4.3 160 28-189 186-350 (419)
49 COG5238 RNA1 Ran GTPase-activa 98.2 1E-06 2.2E-11 81.1 3.9 87 50-136 28-132 (388)
50 KOG4579 Leucine-rich repeat (L 98.2 5.4E-08 1.2E-12 79.7 -3.8 103 7-113 31-136 (177)
51 COG5238 RNA1 Ran GTPase-activa 98.2 8.3E-07 1.8E-11 81.6 2.3 113 25-138 28-171 (388)
52 PRK15386 type III secretion pr 98.0 2.1E-05 4.6E-10 79.2 9.5 55 382-442 50-104 (426)
53 PF12799 LRR_4: Leucine Rich r 97.9 6.5E-06 1.4E-10 54.7 2.7 36 578-614 2-37 (44)
54 KOG2982 Uncharacterized conser 97.9 4.1E-06 8.9E-11 78.3 1.6 39 211-249 93-131 (418)
55 PF12799 LRR_4: Leucine Rich r 97.9 1.3E-05 2.8E-10 53.3 3.5 17 72-88 20-36 (44)
56 KOG1644 U2-associated snRNP A' 97.9 2.3E-05 4.9E-10 69.4 5.7 125 7-135 23-151 (233)
57 PRK15386 type III secretion pr 97.9 7.9E-05 1.7E-09 75.2 9.9 77 404-493 48-124 (426)
58 KOG3665 ZYG-1-like serine/thre 97.9 1.4E-05 3E-10 87.8 4.8 138 28-190 123-263 (699)
59 KOG3665 ZYG-1-like serine/thre 97.7 1.5E-05 3.2E-10 87.6 2.8 136 3-140 122-266 (699)
60 KOG1644 U2-associated snRNP A' 97.7 5.5E-05 1.2E-09 67.0 5.6 106 4-112 43-152 (233)
61 PF13306 LRR_5: Leucine rich r 97.7 0.0001 2.2E-09 63.6 6.3 110 18-133 3-112 (129)
62 PF13306 LRR_5: Leucine rich r 97.4 0.00039 8.5E-09 59.8 6.6 81 358-441 10-90 (129)
63 KOG4341 F-box protein containi 97.4 1.6E-05 3.5E-10 78.1 -2.8 36 407-442 400-436 (483)
64 KOG2739 Leucine-rich acidic nu 97.2 0.00018 4E-09 66.7 2.8 107 22-133 38-152 (260)
65 KOG2739 Leucine-rich acidic nu 97.1 0.00035 7.6E-09 64.9 2.7 87 50-138 41-130 (260)
66 KOG4341 F-box protein containi 96.9 7.5E-05 1.6E-09 73.5 -2.9 281 28-323 139-438 (483)
67 KOG2123 Uncharacterized conser 96.6 0.00013 2.8E-09 67.9 -4.2 86 51-140 18-104 (388)
68 KOG2123 Uncharacterized conser 96.5 9E-05 2E-09 68.9 -5.3 63 406-470 39-101 (388)
69 PF00560 LRR_1: Leucine Rich R 95.7 0.0044 9.6E-08 34.0 0.8 11 580-590 3-13 (22)
70 PF00560 LRR_1: Leucine Rich R 95.6 0.0051 1.1E-07 33.8 0.9 21 602-623 1-21 (22)
71 KOG4308 LRR-containing protein 95.4 0.00031 6.7E-09 73.9 -8.5 191 29-229 89-304 (478)
72 KOG1947 Leucine rich repeat pr 95.1 0.0052 1.1E-07 66.6 -0.3 14 175-188 293-306 (482)
73 KOG1947 Leucine rich repeat pr 95.1 0.0018 3.9E-08 70.2 -4.1 111 359-469 187-307 (482)
74 KOG0473 Leucine-rich repeat pr 95.0 0.00034 7.3E-09 63.4 -7.9 84 50-136 40-123 (326)
75 KOG4308 LRR-containing protein 94.1 0.0012 2.7E-08 69.5 -7.8 190 54-253 89-304 (478)
76 KOG0473 Leucine-rich repeat pr 93.6 0.0017 3.6E-08 59.0 -6.7 96 14-113 29-124 (326)
77 PF13504 LRR_7: Leucine rich r 93.5 0.046 1E-06 27.7 1.3 15 4-18 2-16 (17)
78 PF13504 LRR_7: Leucine rich r 93.2 0.055 1.2E-06 27.4 1.2 13 578-590 2-14 (17)
79 smart00369 LRR_TYP Leucine-ric 92.8 0.087 1.9E-06 30.3 1.9 23 2-24 1-23 (26)
80 smart00370 LRR Leucine-rich re 92.8 0.087 1.9E-06 30.3 1.9 23 2-24 1-23 (26)
81 smart00369 LRR_TYP Leucine-ric 89.8 0.36 7.8E-06 27.6 2.4 14 76-89 2-15 (26)
82 smart00370 LRR Leucine-rich re 89.8 0.36 7.8E-06 27.6 2.4 14 76-89 2-15 (26)
83 PF13516 LRR_6: Leucine Rich r 86.0 0.18 3.9E-06 28.3 -0.5 13 578-590 3-15 (24)
84 KOG3864 Uncharacterized conser 85.8 0.11 2.3E-06 46.8 -2.2 35 385-419 102-136 (221)
85 KOG3864 Uncharacterized conser 84.6 0.18 3.9E-06 45.4 -1.3 84 100-186 101-185 (221)
86 smart00364 LRR_BAC Leucine-ric 77.6 1.5 3.3E-05 25.0 1.3 17 578-595 3-19 (26)
87 smart00365 LRR_SD22 Leucine-ri 74.7 2.6 5.7E-05 24.1 1.8 14 27-40 2-15 (26)
88 KOG4242 Predicted myosin-I-bin 71.0 42 0.00091 35.0 10.3 59 362-420 415-480 (553)
89 smart00368 LRR_RI Leucine rich 59.8 6.2 0.00013 23.0 1.4 20 333-352 3-22 (28)
90 KOG3763 mRNA export factor TAP 55.7 7.4 0.00016 41.1 2.0 63 50-114 216-284 (585)
91 KOG3763 mRNA export factor TAP 55.6 5.7 0.00012 41.9 1.2 68 24-91 215-285 (585)
92 KOG4242 Predicted myosin-I-bin 54.8 72 0.0016 33.4 8.6 60 385-444 414-480 (553)
93 smart00367 LRR_CC Leucine-rich 33.9 30 0.00064 19.6 1.4 13 480-492 1-13 (26)
94 TIGR00864 PCC polycystin catio 27.3 33 0.00072 44.1 1.7 33 583-615 1-33 (2740)
95 TIGR00864 PCC polycystin catio 24.1 45 0.00097 43.0 2.0 32 9-40 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1e-61 Score=566.83 Aligned_cols=540 Identities=32% Similarity=0.493 Sum_probs=435.2
Q ss_pred CCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccC-CCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEE
Q 036216 27 STLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGL-QNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHL 105 (695)
Q Consensus 27 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 105 (695)
.+++.|++++|.+++. .+..+..+++|++|+|++|++.+.+|..+ ..+++|++|++++|.+++.+|. +.+++|++|
T Consensus 69 ~~v~~L~L~~~~i~~~-~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L 145 (968)
T PLN00113 69 SRVVSIDLSGKNISGK-ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETL 145 (968)
T ss_pred CcEEEEEecCCCcccc-CChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEE
Confidence 4677777777777765 56667777777777777777766566544 3777777777777777766653 456777777
Q ss_pred EcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcccccccchhcCCCCCCCEEEcc
Q 036216 106 SLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLS 185 (695)
Q Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~ 185 (695)
++++|.+.+..|..++++++|++|++++|.+.+..|. .++.+.+ |++|++++|.+.+..|..++.+++|++|+++
T Consensus 146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~----~~~~l~~-L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 220 (968)
T PLN00113 146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN----SLTNLTS-LEFLTLASNQLVGQIPRELGQMKSLKWIYLG 220 (968)
T ss_pred ECcCCcccccCChHHhcCCCCCEEECccCcccccCCh----hhhhCcC-CCeeeccCCCCcCcCChHHcCcCCccEEECc
Confidence 7777777777777777777777777777777766666 4555555 7777777777777777777788888888888
Q ss_pred CCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCccEEEccCCCCCCCCCccccCCCCC
Q 036216 186 NNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDL 265 (695)
Q Consensus 186 ~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 265 (695)
+|.+. +.+|. .+.++++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.+|.++..+++|
T Consensus 221 ~n~l~-------------~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 286 (968)
T PLN00113 221 YNNLS-------------GEIPY-EIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKL 286 (968)
T ss_pred CCccC-------------CcCCh-hHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCc
Confidence 77765 34444 57778888888888887777777777788888888888888877788888888888
Q ss_pred CEEEcccCCCccccChHHhhcccccceeeccccccccccc-CccccCccceEecccccceeecCCCCCCCcEEEccCCcC
Q 036216 266 QFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELT-NLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSL 344 (695)
Q Consensus 266 ~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l 344 (695)
++|++++|.+.+.+|..+ ..+++|+.|++++|.+.+..+ .+..+++|+.|+++ +|.+
T Consensus 287 ~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~---------------------~n~l 344 (968)
T PLN00113 287 ISLDLSDNSLSGEIPELV-IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLW---------------------SNKF 344 (968)
T ss_pred CEEECcCCeeccCCChhH-cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECc---------------------CCCC
Confidence 888888888877777654 567788888888887776554 34444444444444 4444
Q ss_pred CCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeC
Q 036216 345 SGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTI 424 (695)
Q Consensus 345 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 424 (695)
.+.+|..+ ..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++++..
T Consensus 345 ~~~~p~~l----~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~ 420 (968)
T PLN00113 345 SGEIPKNL----GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL 420 (968)
T ss_pred cCcCChHH----hCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeEC
Confidence 44333332 24677888888888888888888888889999999999998888888888999999999999999888
Q ss_pred CccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhc
Q 036216 425 PILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNL 504 (695)
Q Consensus 425 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l 504 (695)
|..+..+++|+.|++++|.+.+.+|..+. .+++|+.|++++|++.+.+|..+ ..++|+.|++++|++++.+|..+..+
T Consensus 421 p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l 498 (968)
T PLN00113 421 PSEFTKLPLVYFLDISNNNLQGRINSRKW-DMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSL 498 (968)
T ss_pred ChhHhcCCCCCEEECcCCcccCccChhhc-cCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhh
Confidence 88899999999999999999888887665 68999999999999988888765 46899999999999999999888877
Q ss_pred ccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEec
Q 036216 505 TAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNL 584 (695)
Q Consensus 505 ~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 584 (695)
++| +.|++++|++.+.+|..+..+++|++|+|
T Consensus 499 ~~L------------------------------------------------~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 530 (968)
T PLN00113 499 SEL------------------------------------------------MQLKLSENKLSGEIPDELSSCKKLVSLDL 530 (968)
T ss_pred hcc------------------------------------------------CEEECcCCcceeeCChHHcCccCCCEEEC
Confidence 766 78999999999999999999999999999
Q ss_pred cCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccCcCcccCCCCcccCccccccccCC-cccCC
Q 036216 585 SYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSFNASCFLGN-NLCGA 663 (695)
Q Consensus 585 s~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~iP~~~~~~~~~~~~~~~n-~l~~~ 663 (695)
++|.+++.+|..|+.+++|+.|+|++|++++.+|..+..+++|++|++++|+++|.+|+.+++.++....+.|| .+||+
T Consensus 531 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~ 610 (968)
T PLN00113 531 SHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGG 610 (968)
T ss_pred CCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 89986
Q ss_pred C
Q 036216 664 P 664 (695)
Q Consensus 664 ~ 664 (695)
+
T Consensus 611 ~ 611 (968)
T PLN00113 611 D 611 (968)
T ss_pred c
Confidence 5
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.6e-56 Score=523.03 Aligned_cols=535 Identities=30% Similarity=0.493 Sum_probs=470.3
Q ss_pred CCCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhc-CCCCCCEEEcCCCcCcccCCccCCCCCCCCEE
Q 036216 3 PSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHL 81 (695)
Q Consensus 3 ~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 81 (695)
.+++.|+++++.+++..+..|..+++|++|+|++|.+.+. +|..+. .+++|++|+|++|.+++.+|. ..+++|++|
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L 145 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETL 145 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEE
Confidence 4689999999999988888899999999999999999865 777665 999999999999999987775 568999999
Q ss_pred eCCCCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEcc
Q 036216 82 GLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALA 161 (695)
Q Consensus 82 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~ 161 (695)
++++|.+++..|..++++++|++|++++|.+.+..|..++++++|++|++++|.+.+..|. .++.+.. |+.|+++
T Consensus 146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~----~l~~l~~-L~~L~L~ 220 (968)
T PLN00113 146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR----ELGQMKS-LKWIYLG 220 (968)
T ss_pred ECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCCh----HHcCcCC-ccEEECc
Confidence 9999999999999999999999999999999989999999999999999999999988887 6677777 9999999
Q ss_pred CcccccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCc
Q 036216 162 SSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQL 241 (695)
Q Consensus 162 ~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L 241 (695)
+|.+.+.+|..++++++|++|++++|.+. +.+|. .+.++++|+.|++++|.+.+..+..+..+.+|
T Consensus 221 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-------------~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 286 (968)
T PLN00113 221 YNNLSGEIPYEIGGLTSLNHLDLVYNNLT-------------GPIPS-SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKL 286 (968)
T ss_pred CCccCCcCChhHhcCCCCCEEECcCceec-------------cccCh-hHhCCCCCCEEECcCCeeeccCchhHhhccCc
Confidence 99999999999999999999999999875 34555 79999999999999999999888899999999
Q ss_pred cEEEccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHhhcccccceeeccccccccccc-CccccCccceEeccc
Q 036216 242 IELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELT-NLTKASQLSYLSLIA 320 (695)
Q Consensus 242 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~L~~L~l~~ 320 (695)
++|++++|.+.+.+|.++..+++|+.|++++|.+.+.+|..+ ..+++|+.|++++|.+.+..+ .+..+++|+.|++++
T Consensus 287 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~ 365 (968)
T PLN00113 287 ISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL-TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLST 365 (968)
T ss_pred CEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhH-hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCC
Confidence 999999999999999999999999999999999998877664 678999999999999987666 455556666666655
Q ss_pred ccceeecCCCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccC
Q 036216 321 NNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNL 400 (695)
Q Consensus 321 n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~ 400 (695)
|.+.+.. |..++ .+++|+.+++++|.+.+.+|..+..+++|+.|++++|.+++..
T Consensus 366 n~l~~~~---------------------p~~~~----~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~ 420 (968)
T PLN00113 366 NNLTGEI---------------------PEGLC----SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL 420 (968)
T ss_pred CeeEeeC---------------------ChhHh----CcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeEC
Confidence 5555443 33333 3567888888888888888888888899999999999998888
Q ss_pred CccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCC
Q 036216 401 PTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDL 480 (695)
Q Consensus 401 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l 480 (695)
|..+..++.|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.+|..+ ..++|+.|++++|++.+..|..+..+
T Consensus 421 p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~--~~~~L~~L~ls~n~l~~~~~~~~~~l 498 (968)
T PLN00113 421 PSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF--GSKRLENLDLSRNQFSGAVPRKLGSL 498 (968)
T ss_pred ChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc--ccccceEEECcCCccCCccChhhhhh
Confidence 8888889999999999999988888888889999999999999888888766 46899999999999999999999999
Q ss_pred CCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEc
Q 036216 481 AFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDF 560 (695)
Q Consensus 481 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~L 560 (695)
++|+.|++++|++.+.+|..+..+++| ++|++
T Consensus 499 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L------------------------------------------------~~L~L 530 (968)
T PLN00113 499 SELMQLKLSENKLSGEIPDELSSCKKL------------------------------------------------VSLDL 530 (968)
T ss_pred hccCEEECcCCcceeeCChHHcCccCC------------------------------------------------CEEEC
Confidence 999999999999999999888877766 78899
Q ss_pred CCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccCc
Q 036216 561 SKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNY 636 (695)
Q Consensus 561 s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~ 636 (695)
++|.+++.+|..+..+++|++|+|++|++++.+|..+..+++|+.|++++|++.+.+|.. .....+....+.+|+
T Consensus 531 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~ 605 (968)
T PLN00113 531 SHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNI 605 (968)
T ss_pred CCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCc
Confidence 999999999999999999999999999999999999999999999999999999999965 334455566677776
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2e-38 Score=312.65 Aligned_cols=388 Identities=23% Similarity=0.256 Sum_probs=274.7
Q ss_pred cEEEcCCCcCCCCCccCCCCC--CCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeC
Q 036216 6 VELDLSNCQLHHFPQLPVANF--STLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGL 83 (695)
Q Consensus 6 ~~L~ls~~~l~~~~~~~~~~l--~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 83 (695)
+.||++++.+..+.+..+..+ ..-++||+++|++.++ .+.+|.++++|+.+++.+|.++ .+|.......+|+.|+|
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~i-d~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L 132 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHI-DFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDL 132 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccccC-cHHHHhcCCcceeeeeccchhh-hcccccccccceeEEee
Confidence 457888888888766554443 3456699999999887 7777888999999999999888 67766666777999999
Q ss_pred CCCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCc
Q 036216 84 PFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASS 163 (695)
Q Consensus 84 ~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n 163 (695)
.+|.|+++-.+.+..++.|+.||||.|.|+.+-..+|..-.++++|+|++|+|+..... .+..+.+ |..|.|++|
T Consensus 133 ~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~----~F~~lns-L~tlkLsrN 207 (873)
T KOG4194|consen 133 RHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETG----HFDSLNS-LLTLKLSRN 207 (873)
T ss_pred eccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccc----cccccch-heeeecccC
Confidence 99998888888888888999999999988865556777778888888888888776555 4555554 888888888
Q ss_pred ccccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCccE
Q 036216 164 SISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIE 243 (695)
Q Consensus 164 ~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 243 (695)
+++...+..|.++++|+.|+|..|+|. .+....|.++++|+.|.+..|++.......|..+.++++
T Consensus 208 rittLp~r~Fk~L~~L~~LdLnrN~ir--------------ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~ 273 (873)
T KOG4194|consen 208 RITTLPQRSFKRLPKLESLDLNRNRIR--------------IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEH 273 (873)
T ss_pred cccccCHHHhhhcchhhhhhcccccee--------------eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccce
Confidence 888888888888888888888888874 343446788888888888888887777777777888888
Q ss_pred EEccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHhhcccccceeeccccccccccc-CccccCccceEeccccc
Q 036216 244 LGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELT-NLTKASQLSYLSLIANN 322 (695)
Q Consensus 244 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~L~~L~l~~n~ 322 (695)
|+|+.|++...-..|+..++.|+.|++++|.|. .+....+..+++|+.|+|+.|+++...+ .+..+..|++|.+++|.
T Consensus 274 l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~-rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns 352 (873)
T KOG4194|consen 274 LNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQ-RIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS 352 (873)
T ss_pred eecccchhhhhhcccccccchhhhhccchhhhh-eeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc
Confidence 888888777777777777777778888877776 3333333556777777777777765444 44445555555555554
Q ss_pred ceeecCCCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCC---ccccCCCCCCEEeCCCCccccc
Q 036216 323 FSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLP---DCWMSYQNLMALDLSNNKFTGN 399 (695)
Q Consensus 323 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~~~~L~~L~ls~n~~~~~ 399 (695)
+. ..-.++|..+++|++|+|++|.++..+- ..|.++++|+.|++.+|++...
T Consensus 353 i~-------------------------~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I 407 (873)
T KOG4194|consen 353 ID-------------------------HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSI 407 (873)
T ss_pred hH-------------------------HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeec
Confidence 43 2223344445566666666665553332 2355566666666666666655
Q ss_pred CCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCC
Q 036216 400 LPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGE 441 (695)
Q Consensus 400 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 441 (695)
...+|.+++.|+.|+|.+|.|..+-|.+|..+ .|++|.+..
T Consensus 408 ~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 408 PKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred chhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 55566666666666666666666666666666 666665543
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3.7e-38 Score=310.87 Aligned_cols=389 Identities=24% Similarity=0.268 Sum_probs=248.2
Q ss_pred CEEEcCCCcCcccCCccCCCCC--CCCEEeCCCCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEcc
Q 036216 55 HFLNLGYNNFQGPIPEGLQNLT--SLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLG 132 (695)
Q Consensus 55 ~~L~Ls~n~i~~~~~~~~~~l~--~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (695)
+.|+++++.+..+....+.+.- .-+.|++++|++..+.+..|.++++|+.+++..|.++ .+|...+...+|+.|+|
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L- 132 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDL- 132 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEee-
Confidence 3455555555533333333322 2233555555555555555555555555555555555 44443333333444444
Q ss_pred CCcCccccchhhhhhhcccccccceEEccCcccccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhh
Q 036216 133 GAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFA 212 (695)
Q Consensus 133 ~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~ 212 (695)
.+|.|...-.+++..++.|+.|||+.|.|+ .++...|.
T Consensus 133 ----------------------------~~N~I~sv~se~L~~l~alrslDLSrN~is--------------~i~~~sfp 170 (873)
T KOG4194|consen 133 ----------------------------RHNLISSVTSEELSALPALRSLDLSRNLIS--------------EIPKPSFP 170 (873)
T ss_pred ----------------------------eccccccccHHHHHhHhhhhhhhhhhchhh--------------cccCCCCC
Confidence 444444444555666677777777777765 55555565
Q ss_pred CCCCCCEEEcccccceeecCCCCCCCCCccEEEccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHhhcccccce
Q 036216 213 NLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYL 292 (695)
Q Consensus 213 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~ 292 (695)
.-.+++.|++++|+|+.... ..|..+.+|..|.+++|+++ ++|...|+.+++|+.
T Consensus 171 ~~~ni~~L~La~N~It~l~~------------------------~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~ 225 (873)
T KOG4194|consen 171 AKVNIKKLNLASNRITTLET------------------------GHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLES 225 (873)
T ss_pred CCCCceEEeecccccccccc------------------------ccccccchheeeecccCccc-ccCHHHhhhcchhhh
Confidence 55666666666666653322 23455567777788888887 888888888888888
Q ss_pred eecccccccccccCccccCccceEecccccceeecCCCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccc
Q 036216 293 LDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNIL 372 (695)
Q Consensus 293 L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l 372 (695)
|+|..|++... -..+|+++++|+.|.+..|.+
T Consensus 226 LdLnrN~iriv------------------------------------------------e~ltFqgL~Sl~nlklqrN~I 257 (873)
T KOG4194|consen 226 LDLNRNRIRIV------------------------------------------------EGLTFQGLPSLQNLKLQRNDI 257 (873)
T ss_pred hhccccceeee------------------------------------------------hhhhhcCchhhhhhhhhhcCc
Confidence 88888877621 011233455666666666666
Q ss_pred cCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhh
Q 036216 373 QGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWF 452 (695)
Q Consensus 373 ~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 452 (695)
......+|..+.++++|+|+.|++...-.+++.+++.|+.|++++|.|..+-++++.-+++|+.|+|+.|.+...-+..+
T Consensus 258 ~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf 337 (873)
T KOG4194|consen 258 SKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSF 337 (873)
T ss_pred ccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHH
Confidence 65555667777777777777777776666777777788888888887777777777777778888888877744334444
Q ss_pred hhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChh---hhhcccCcccCCCCCCcccccCCCCCCCC
Q 036216 453 GERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNC---IHNLTAMATVNPFTGNAIEYSFPLNSTIG 529 (695)
Q Consensus 453 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~---~~~l~~L~~l~~~~~~~l~~~~~~~~~~~ 529 (695)
. .+..|++|+|+.|++...-...|..+.+|++|||++|.+++.+.+. |.++
T Consensus 338 ~-~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl------------------------- 391 (873)
T KOG4194|consen 338 R-VLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGL------------------------- 391 (873)
T ss_pred H-HHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccc-------------------------
Confidence 3 5777777777777777655666777788888888888777655442 2222
Q ss_pred CCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECC
Q 036216 530 PGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFS 609 (695)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 609 (695)
+.|+.|++.+|++..+.-.+|.++.+|++|||.+|.|....|++|..+ .|+.|.+.
T Consensus 392 -----------------------~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 392 -----------------------PSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred -----------------------hhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 233667777777775555667777777777777777777777777777 67777664
Q ss_pred C
Q 036216 610 V 610 (695)
Q Consensus 610 ~ 610 (695)
.
T Consensus 448 S 448 (873)
T KOG4194|consen 448 S 448 (873)
T ss_pred c
Confidence 3
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.6e-41 Score=320.24 Aligned_cols=265 Identities=25% Similarity=0.335 Sum_probs=154.6
Q ss_pred CCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEE
Q 036216 27 STLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLS 106 (695)
Q Consensus 27 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 106 (695)
..++.+++++|.+.. +.+.+.++..|.+|++++|++. ..|.+++.+.+++.|++++|+++ .+|..++.+.+|+.|+
T Consensus 45 v~l~~lils~N~l~~--l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~ 120 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEV--LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLD 120 (565)
T ss_pred cchhhhhhccCchhh--ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhh
Confidence 456667777777665 4455666777777777777766 56666777777777777777776 5666677777777777
Q ss_pred cccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcccccccchhcCCCCCCCEEEccC
Q 036216 107 LSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSN 186 (695)
Q Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~ 186 (695)
.++|.+. .+|.+++.+..|..++..+|+++...+. ++.+.. +..+++.+|++....|..+. ++.|++||...
T Consensus 121 ~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~slp~~-----~~~~~~-l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~ 192 (565)
T KOG0472|consen 121 CSSNELK-ELPDSIGRLLDLEDLDATNNQISSLPED-----MVNLSK-LSKLDLEGNKLKALPENHIA-MKRLKHLDCNS 192 (565)
T ss_pred cccccee-ecCchHHHHhhhhhhhccccccccCchH-----HHHHHH-HHHhhccccchhhCCHHHHH-HHHHHhcccch
Confidence 7777766 5666677777777777777766554433 222333 55666666666665555444 66777777766
Q ss_pred CCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCccEEEccCCCCCCCCCccccCCCCCC
Q 036216 187 NSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQ 266 (695)
Q Consensus 187 n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 266 (695)
|.+. .+|+ .++.+.+|+.|++..|++.... .|..+..|.++++..|.+.....+....++++.
T Consensus 193 N~L~--------------tlP~-~lg~l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~ 255 (565)
T KOG0472|consen 193 NLLE--------------TLPP-ELGGLESLELLYLRRNKIRFLP--EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLL 255 (565)
T ss_pred hhhh--------------cCCh-hhcchhhhHHHHhhhcccccCC--CCCccHHHHHHHhcccHHHhhHHHHhcccccce
Confidence 6653 5665 5666666666666666665221 344444444444444443322112223445555
Q ss_pred EEEcccCCCccccChHHhhcccccceeecccccccccccCccccCccceEecccccc
Q 036216 267 FLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNF 323 (695)
Q Consensus 267 ~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~ 323 (695)
.||+.+|+++ ++|..+. .+.+|+.||+++|.+++.++.++.+ +|+.|.+.+|++
T Consensus 256 vLDLRdNklk-e~Pde~c-lLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 256 VLDLRDNKLK-EVPDEIC-LLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred eeeccccccc-cCchHHH-HhhhhhhhcccCCccccCCcccccc-eeeehhhcCCch
Confidence 5555555554 5554442 2444555555555555555555554 455555555543
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.6e-40 Score=312.11 Aligned_cols=133 Identities=27% Similarity=0.390 Sum_probs=103.6
Q ss_pred hcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCC
Q 036216 48 VFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLR 127 (695)
Q Consensus 48 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 127 (695)
...-.-|+.|.+++|.++ .+-+.+.++..|.+|++.+|++. ..|.+++.+..++.|+.++|.+. .+|+.++.+.+|+
T Consensus 41 wW~qv~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~ 117 (565)
T KOG0472|consen 41 WWEQVDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLV 117 (565)
T ss_pred hhhhcchhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhh
Confidence 345567899999999998 55667899999999999999999 77889999999999999999998 8999999999999
Q ss_pred EEEccCCcCccccchhhhhhhcccccccceEEccCcccccccchhcCCCCCCCEEEccCCCcC
Q 036216 128 RLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIV 190 (695)
Q Consensus 128 ~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~ 190 (695)
+++.+.|.+....+. ++.+.. ++.++..+|++.. .|+.+..+.++..+++.+|+++
T Consensus 118 ~l~~s~n~~~el~~~-----i~~~~~-l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~~~n~l~ 173 (565)
T KOG0472|consen 118 KLDCSSNELKELPDS-----IGRLLD-LEDLDATNNQISS-LPEDMVNLSKLSKLDLEGNKLK 173 (565)
T ss_pred hhhccccceeecCch-----HHHHhh-hhhhhcccccccc-CchHHHHHHHHHHhhccccchh
Confidence 999999988765444 222333 5666666666655 3444555666666666666654
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-36 Score=316.32 Aligned_cols=480 Identities=26% Similarity=0.352 Sum_probs=348.8
Q ss_pred EEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCC
Q 036216 7 ELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFN 86 (695)
Q Consensus 7 ~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 86 (695)
.+|.+.+.++.||...+.+ ..+..|+++.|.+... .-+++.+.-+|+.|++++|++. ..|..+..+.+|+.|.++.|
T Consensus 2 ~vd~s~~~l~~ip~~i~~~-~~~~~ln~~~N~~l~~-pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n 78 (1081)
T KOG0618|consen 2 HVDASDEQLELIPEQILNN-EALQILNLRRNSLLSR-PLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRN 78 (1081)
T ss_pred CcccccccCcccchhhccH-HHHHhhhccccccccC-chHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchh
Confidence 4678888888888754443 4488888888887653 1234445556888888888887 67778888888888888888
Q ss_pred CCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcccc
Q 036216 87 HFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSIS 166 (695)
Q Consensus 87 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~ 166 (695)
.+. ..|.+.+++.+|++|.|.+|.+. .+|.++..+.+|+.|+++.|.+..
T Consensus 79 ~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~~---------------------------- 128 (1081)
T KOG0618|consen 79 YIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFGP---------------------------- 128 (1081)
T ss_pred hHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccCC----------------------------
Confidence 887 56777888888888888888877 678888888888888888877643
Q ss_pred cccchhcCCCCCCCEEEccCC-CcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCccEEE
Q 036216 167 GHLTDQLGQFKNLDSLDLSNN-SIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELG 245 (695)
Q Consensus 167 ~~~~~~l~~l~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 245 (695)
.|..+..+..+..++.++| ++. .++... .+.+ +
T Consensus 129 --~Pl~i~~lt~~~~~~~s~N~~~~-------------------~lg~~~-ik~~------------------------~ 162 (1081)
T KOG0618|consen 129 --IPLVIEVLTAEEELAASNNEKIQ-------------------RLGQTS-IKKL------------------------D 162 (1081)
T ss_pred --CchhHHhhhHHHHHhhhcchhhh-------------------hhcccc-chhh------------------------h
Confidence 3344555666666666666 111 111111 3333 4
Q ss_pred ccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHhhcccccceeecccccccccccCccccCccceEeccccccee
Q 036216 246 LRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSG 325 (695)
Q Consensus 246 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~ 325 (695)
+..+.+.+.++..+..++. .+++.+|.+. ... ...+.+|+.+....|++.... ...++++.|+..+|.+..
T Consensus 163 l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~d---ls~~~~l~~l~c~rn~ls~l~---~~g~~l~~L~a~~n~l~~ 233 (1081)
T KOG0618|consen 163 LRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLD---LSNLANLEVLHCERNQLSELE---ISGPSLTALYADHNPLTT 233 (1081)
T ss_pred hhhhhcccchhcchhhhhe--eeecccchhh-hhh---hhhccchhhhhhhhcccceEE---ecCcchheeeeccCccee
Confidence 4444444444444444444 5777777664 222 345677777777777765322 123678888888888875
Q ss_pred ecCCC-CCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccc
Q 036216 326 SLPLI-SSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSL 404 (695)
Q Consensus 326 ~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~ 404 (695)
..+.. +.+|+.+++++|++++. |++.. .+.+|+.+...+|.++ .+|..+...++|+.|.+..|.+. .+|...
T Consensus 234 ~~~~p~p~nl~~~dis~n~l~~l-p~wi~----~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~l 306 (1081)
T KOG0618|consen 234 LDVHPVPLNLQYLDISHNNLSNL-PEWIG----ACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFL 306 (1081)
T ss_pred eccccccccceeeecchhhhhcc-hHHHH----hcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcc
Confidence 54443 46899999999988753 35544 5899999999999996 77888888899999999999998 677777
Q ss_pred cCCCCCcEEECcCCcceeeCCc-cccCCCC-CcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCC
Q 036216 405 GSLSSLVSLHLRKNRLSGTIPI-LLKNCTS-LVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAF 482 (695)
Q Consensus 405 ~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~-L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 482 (695)
..+..|++|+|..|++. .+|. .+..... |..|..+.|++ ...|..-....+.|+.|++.+|.++...-..+.+..+
T Consensus 307 e~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l-~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~h 384 (1081)
T KOG0618|consen 307 EGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKL-STLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKH 384 (1081)
T ss_pred cccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccc-cccccccchhhHHHHHHHHhcCcccccchhhhccccc
Confidence 88999999999999998 4554 3333333 77788888877 5566544446788999999999999877677888999
Q ss_pred CCEEeCCCCcCcccCCh-hhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcC
Q 036216 483 LQILDLADNNLSGTIPN-CIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFS 561 (695)
Q Consensus 483 L~~L~L~~n~l~~~~p~-~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls 561 (695)
|+.|+|++|++. .+|. .+.+++.| +.|+||
T Consensus 385 LKVLhLsyNrL~-~fpas~~~kle~L------------------------------------------------eeL~LS 415 (1081)
T KOG0618|consen 385 LKVLHLSYNRLN-SFPASKLRKLEEL------------------------------------------------EELNLS 415 (1081)
T ss_pred eeeeeecccccc-cCCHHHHhchHHh------------------------------------------------HHHhcc
Confidence 999999999998 5554 45555544 778899
Q ss_pred CccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCccccc-CCcCCcCCCCCCEEEcccCc
Q 036216 562 KNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGE-IPQSMSSLTFLNHLNLSNNY 636 (695)
Q Consensus 562 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~ls~N~ 636 (695)
+|+++ .+|..+..+..|++|...+|.+. ..| .+..+++|+.+|+|.|+++.. +|..... ++|++||+++|.
T Consensus 416 GNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 416 GNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred cchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence 99998 78888899999999999999998 777 578899999999999988743 4444333 789999999996
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-36 Score=313.42 Aligned_cols=484 Identities=26% Similarity=0.341 Sum_probs=309.9
Q ss_pred CcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCC
Q 036216 5 LVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLP 84 (695)
Q Consensus 5 L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 84 (695)
+..|+++.|.+...|-+...+.-+|+.||+++|.+.. .|..+..+.+|+.|+++.|.|. ..|.+..++.+|++|.|.
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~--fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~ 99 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISS--FPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLK 99 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeecccccccc--CCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheec
Confidence 5678888888877776667777789999999999988 8999999999999999999999 778899999999999999
Q ss_pred CCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcc
Q 036216 85 FNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSS 164 (695)
Q Consensus 85 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~ 164 (695)
+|.+. .+|..+..+++|++|+++.|.+. .+|..+..+..+..+..++|.-... ++... ++.+++..|.
T Consensus 100 ~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~--------lg~~~--ik~~~l~~n~ 167 (1081)
T KOG0618|consen 100 NNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQR--------LGQTS--IKKLDLRLNV 167 (1081)
T ss_pred cchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhh--------hcccc--chhhhhhhhh
Confidence 99988 78999999999999999999998 7899999999999999999933221 22222 8899999999
Q ss_pred cccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCccEE
Q 036216 165 ISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIEL 244 (695)
Q Consensus 165 ~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 244 (695)
+.+.++..+..+.. .|||++|.+. ...+.++.+|+.+....|++.... ..-++++.|
T Consensus 168 l~~~~~~~i~~l~~--~ldLr~N~~~-----------------~~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L 224 (1081)
T KOG0618|consen 168 LGGSFLIDIYNLTH--QLDLRYNEME-----------------VLDLSNLANLEVLHCERNQLSELE----ISGPSLTAL 224 (1081)
T ss_pred cccchhcchhhhhe--eeecccchhh-----------------hhhhhhccchhhhhhhhcccceEE----ecCcchhee
Confidence 99988888888777 7999999873 225677888888888888765322 123466777
Q ss_pred EccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHhhcccccceeecccccccccccCccccCccceEecccccce
Q 036216 245 GLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFS 324 (695)
Q Consensus 245 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~ 324 (695)
+...|.+....+. ..-.+|++++++++.+. .+|.| ...+.+|+.++..+|.++..+..+....+|+.|.+..|.+.
T Consensus 225 ~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~w-i~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~ 300 (1081)
T KOG0618|consen 225 YADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEW-IGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELE 300 (1081)
T ss_pred eeccCcceeeccc--cccccceeeecchhhhh-cchHH-HHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhh
Confidence 7777766633221 12246777777777776 66643 45577777777777777655555555555555555555444
Q ss_pred eecCCCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCcc-ccCCC-CCCEEeCCCCcccccCCc
Q 036216 325 GSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDC-WMSYQ-NLMALDLSNNKFTGNLPT 402 (695)
Q Consensus 325 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~-~L~~L~ls~n~~~~~~~~ 402 (695)
...|.. .+...|+.|++..|++. ..|+. +.... +|..+..+.|++.. .|.
T Consensus 301 yip~~l--------------------------e~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~-lp~ 352 (1081)
T KOG0618|consen 301 YIPPFL--------------------------EGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLST-LPS 352 (1081)
T ss_pred hCCCcc--------------------------cccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccc-ccc
Confidence 222110 11333444444444444 22221 11111 24444455554442 221
Q ss_pred -cccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCC
Q 036216 403 -SLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLA 481 (695)
Q Consensus 403 -~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~ 481 (695)
.=...+.|+.|++.+|.+++..-..+.+..+|+.|++++|.+ ..+|+.. +.++.
T Consensus 353 ~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL-~~fpas~------------------------~~kle 407 (1081)
T KOG0618|consen 353 YEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL-NSFPASK------------------------LRKLE 407 (1081)
T ss_pred ccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccc-ccCCHHH------------------------HhchH
Confidence 111234455555555555544434444555555555555554 4444444 44455
Q ss_pred CCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcC
Q 036216 482 FLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFS 561 (695)
Q Consensus 482 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls 561 (695)
.|+.|++++|+++ .+|+++..+..| ++|...
T Consensus 408 ~LeeL~LSGNkL~-~Lp~tva~~~~L------------------------------------------------~tL~ah 438 (1081)
T KOG0618|consen 408 ELEELNLSGNKLT-TLPDTVANLGRL------------------------------------------------HTLRAH 438 (1081)
T ss_pred HhHHHhcccchhh-hhhHHHHhhhhh------------------------------------------------HHHhhc
Confidence 5555555555555 455555544444 233334
Q ss_pred CccccccCCccccCCCCCCEEeccCCccccc-CCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccC
Q 036216 562 KNLFSGTLPMGLTNLKAVQSLNLSYNIFTGR-IPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNN 635 (695)
Q Consensus 562 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N 635 (695)
+|++. ..| .+..++.|+.+|+|.|.++.. +|+.... +.|+.|||++|.-....-..|..+.++...++.-|
T Consensus 439 sN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 439 SNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred CCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 44444 445 566666666666666666532 2222211 66777777777644344455555556665665555
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=4.9e-34 Score=283.74 Aligned_cols=271 Identities=25% Similarity=0.360 Sum_probs=167.5
Q ss_pred ccCCCCCCEEEcccCCCccccChHHhhcccccceeecccccccccccCccccCccceEecccccceeecCCCCCCCcEEE
Q 036216 259 LYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLE 338 (695)
Q Consensus 259 l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~ 338 (695)
+..-+++-.|++++|+|. +||..+|.++..|-.|||++|++...+|....+..|+.|++++|++..
T Consensus 122 LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~h------------- 187 (1255)
T KOG0444|consen 122 LEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNH------------- 187 (1255)
T ss_pred hhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhH-------------
Confidence 344455556666666665 777777777777778888888777666666666656665555554431
Q ss_pred ccCCcCCCccchhhhhhhhhccccceeecccccc-cCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcC
Q 036216 339 LSGNSLSGPIFHFLCYTINETMKLKFLFLDRNIL-QGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRK 417 (695)
Q Consensus 339 l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~ 417 (695)
.-...+..+++|+.|++++.+- ...+|..+..+.+|..+|+|.|.+. .+|+.+..+++|+.|+|++
T Consensus 188 ------------fQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~ 254 (1255)
T KOG0444|consen 188 ------------FQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSG 254 (1255)
T ss_pred ------------HHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCc
Confidence 1111122244555555555442 2345666667777777777777776 5666666677777777777
Q ss_pred CcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCc-cc
Q 036216 418 NRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLS-GT 496 (695)
Q Consensus 418 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~-~~ 496 (695)
|+|+. +...... ..+|++|+++.|+++ .+|.+++.++.|+.|.+.+|+++ .-
T Consensus 255 N~ite-L~~~~~~-------------------------W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeG 307 (1255)
T KOG0444|consen 255 NKITE-LNMTEGE-------------------------WENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEG 307 (1255)
T ss_pred Cceee-eeccHHH-------------------------Hhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccC
Confidence 77662 2222223 344555555555555 56677777777777777777765 23
Q ss_pred CChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCC
Q 036216 497 IPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNL 576 (695)
Q Consensus 497 ~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l 576 (695)
+|..++.+..| +.+..++|.+. ..|++++.+
T Consensus 308 iPSGIGKL~~L------------------------------------------------evf~aanN~LE-lVPEglcRC 338 (1255)
T KOG0444|consen 308 IPSGIGKLIQL------------------------------------------------EVFHAANNKLE-LVPEGLCRC 338 (1255)
T ss_pred Cccchhhhhhh------------------------------------------------HHHHhhccccc-cCchhhhhh
Confidence 55555555544 34445556555 778888888
Q ss_pred CCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEcc
Q 036216 577 KAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLS 633 (695)
Q Consensus 577 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls 633 (695)
..|+.|.|++|++. .+|+++.-++.|+.||+..|.-....|.--..-++|+.-++.
T Consensus 339 ~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 339 VKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNID 394 (1255)
T ss_pred HHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecc
Confidence 88888888888887 778888888888888888886553333222222445544443
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=8.5e-33 Score=274.96 Aligned_cols=359 Identities=29% Similarity=0.411 Sum_probs=219.6
Q ss_pred CCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCCCCCchhhhcCCCCCC
Q 036216 24 ANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLE 103 (695)
Q Consensus 24 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 103 (695)
+-++-.|-+|+++|.+++..+|.....+++++.|.|...++. .+|+.++.+.+|++|.+++|++. .+...++.++.|+
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLR 81 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhH
Confidence 345677888999999987778988889999999999998888 78889999999999999999888 4556688888999
Q ss_pred EEEcccCcCCc-ccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcccccccchhcCCCCCCCEE
Q 036216 104 HLSLSYNSLEG-RIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSL 182 (695)
Q Consensus 104 ~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L 182 (695)
.+++.+|+++. -+|..+.++..|..|||+.|++.. .|..+..-+++-.|
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~E------------------------------vP~~LE~AKn~iVL 131 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLRE------------------------------VPTNLEYAKNSIVL 131 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhhh------------------------------cchhhhhhcCcEEE
Confidence 99999888763 467788888888888888888754 23344455556666
Q ss_pred EccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCccEEEccCCCCCCCCCccccCC
Q 036216 183 DLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQ 262 (695)
Q Consensus 183 ~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 262 (695)
+||+|+|. +||...|.+++.|-.|++++|++. .+|..+..+
T Consensus 132 NLS~N~Ie--------------tIPn~lfinLtDLLfLDLS~NrLe-------------------------~LPPQ~RRL 172 (1255)
T KOG0444|consen 132 NLSYNNIE--------------TIPNSLFINLTDLLFLDLSNNRLE-------------------------MLPPQIRRL 172 (1255)
T ss_pred EcccCccc--------------cCCchHHHhhHhHhhhccccchhh-------------------------hcCHHHHHH
Confidence 66666664 566555555555555555555443 223333333
Q ss_pred CCCCEEEcccCCCccccChHHhhcccccceeecccccccccccCccccCccceEecccccceeecCCCCCCCcEEEccCC
Q 036216 263 KDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGN 342 (695)
Q Consensus 263 ~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n 342 (695)
..|++|++++|.+. .+ ....+..+++|+.|.+++.+-+-
T Consensus 173 ~~LqtL~Ls~NPL~-hf-----------------------QLrQLPsmtsL~vLhms~TqRTl----------------- 211 (1255)
T KOG0444|consen 173 SMLQTLKLSNNPLN-HF-----------------------QLRQLPSMTSLSVLHMSNTQRTL----------------- 211 (1255)
T ss_pred hhhhhhhcCCChhh-HH-----------------------HHhcCccchhhhhhhcccccchh-----------------
Confidence 44444444444332 00 01112222333333333221110
Q ss_pred cCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCccee
Q 036216 343 SLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSG 422 (695)
Q Consensus 343 ~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 422 (695)
..++.++..+.+|..++++.|.+. ..|+++..+++|+.|++|+|+++. +........+|++|+++.|+++
T Consensus 212 -------~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt- 281 (1255)
T KOG0444|consen 212 -------DNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT- 281 (1255)
T ss_pred -------hcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-
Confidence 011112223555566666666655 556666666666666666666662 3333344456666666666666
Q ss_pred eCCccccCCCCCcEEEcCCCccc-ccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChhh
Q 036216 423 TIPILLKNCTSLVTLDVGENEVF-GNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCI 501 (695)
Q Consensus 423 ~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~ 501 (695)
.+|.++++++.|+.|.+.+|++. .-+|+.++ .+..|+++..++|.+. .+|+.+|.|..|+.|.|++|++. .+|+.+
T Consensus 282 ~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIG-KL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaI 358 (1255)
T KOG0444|consen 282 VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIG-KLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAI 358 (1255)
T ss_pred cchHHHhhhHHHHHHHhccCcccccCCccchh-hhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhh
Confidence 56666666666666666666543 33555555 4556666666666554 55666666666666666666655 555555
Q ss_pred hhcccC
Q 036216 502 HNLTAM 507 (695)
Q Consensus 502 ~~l~~L 507 (695)
.-++.|
T Consensus 359 HlL~~l 364 (1255)
T KOG0444|consen 359 HLLPDL 364 (1255)
T ss_pred hhcCCc
Confidence 544444
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.91 E-value=2.7e-26 Score=217.34 Aligned_cols=412 Identities=23% Similarity=0.233 Sum_probs=242.2
Q ss_pred cccccceEEccCcccccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEccc-cccee
Q 036216 151 VSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGA-NKLTL 229 (695)
Q Consensus 151 ~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~-n~l~~ 229 (695)
++....+++|..|+|+.+.+.+|+.+++|+.|||++|.|+ .|.+.+|.+++.+..|.+.+ |+|+.
T Consensus 65 LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is--------------~I~p~AF~GL~~l~~Lvlyg~NkI~~ 130 (498)
T KOG4237|consen 65 LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS--------------FIAPDAFKGLASLLSLVLYGNNKITD 130 (498)
T ss_pred CCCcceEEEeccCCcccCChhhccchhhhceecccccchh--------------hcChHhhhhhHhhhHHHhhcCCchhh
Confidence 3444778888888888888888888888888888888886 77777888888887777666 88888
Q ss_pred ecCCCCCCCCCccEEEccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHhhcccccceeeccccccccc------
Q 036216 230 KVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGE------ 303 (695)
Q Consensus 230 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~------ 303 (695)
.....|..+..++.|.+.-|.+.......|..++++..|.+.+|.+. .++...+..+..++.+.+..|.+...
T Consensus 131 l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wl 209 (498)
T KOG4237|consen 131 LPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWL 209 (498)
T ss_pred hhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchh
Confidence 88888888888888888888888777888888999999999999887 77777778888888888888764310
Q ss_pred -------ccCccccCccceEecccccceeecCCCC-CCCcEE---EccCCcCCCccchhhhhhhhhccccceeecccccc
Q 036216 304 -------LTNLTKASQLSYLSLIANNFSGSLPLIS-SNLTVL---ELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNIL 372 (695)
Q Consensus 304 -------~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~L~~L---~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l 372 (695)
...+++.....-..+.+.++....+..+ .+++.+ -.+.+...+..|. ..|.++++|++|++++|++
T Consensus 210 a~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~---~cf~~L~~L~~lnlsnN~i 286 (498)
T KOG4237|consen 210 ADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPA---KCFKKLPNLRKLNLSNNKI 286 (498)
T ss_pred hhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChH---HHHhhcccceEeccCCCcc
Confidence 0011111111122222222221111111 111111 1111212222221 2245566666666666666
Q ss_pred cCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCC-hh
Q 036216 373 QGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIP-SW 451 (695)
Q Consensus 373 ~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~ 451 (695)
+.+-+.+|.+...+++|.|..|++.......|.++..|++|+|++|+|+...|.+|..+.+|.+|.+-.|++.-.-- .|
T Consensus 287 ~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~w 366 (498)
T KOG4237|consen 287 TRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAW 366 (498)
T ss_pred chhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHH
Confidence 66666666666666666666666655445556666666666666666666666666666666666665555421111 11
Q ss_pred hhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCccc---CChhhhhcccCcccCCCCCCcccccCCCCCCC
Q 036216 452 FGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGT---IPNCIHNLTAMATVNPFTGNAIEYSFPLNSTI 528 (695)
Q Consensus 452 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~---~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~ 528 (695)
+++ ++++....|..|- .....++.+++++..+... .|+...-.+ ...
T Consensus 367 l~~--------Wlr~~~~~~~~~C--q~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~--------------------s~~ 416 (498)
T KOG4237|consen 367 LGE--------WLRKKSVVGNPRC--QSPGFVRQIPISDVAFGDFRCGGPEELGCLT--------------------SSP 416 (498)
T ss_pred HHH--------HHhhCCCCCCCCC--CCCchhccccchhccccccccCCccccCCCC--------------------CCC
Confidence 111 1112221221111 1223455666665544311 111110000 000
Q ss_pred CCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEEC
Q 036216 529 GPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDF 608 (695)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 608 (695)
.+..-+... ++...|+..+. .+|..+. ..-++|++.+|.++ .+|+. .+.+| .+|+
T Consensus 417 cP~~c~c~~------------------tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dl 471 (498)
T KOG4237|consen 417 CPPPCTCLD------------------TVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDL 471 (498)
T ss_pred CCCCcchhh------------------hhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hccc
Confidence 000000000 22233444443 5554443 25667888888888 67775 66777 8888
Q ss_pred CCCcccccCCcCCcCCCCCCEEEcccC
Q 036216 609 SVNKFTGEIPQSMSSLTFLNHLNLSNN 635 (695)
Q Consensus 609 s~n~l~~~~p~~l~~l~~L~~L~ls~N 635 (695)
++|+++..--..|.++++|.+|-|+||
T Consensus 472 s~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 472 SNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred ccCceehhhcccccchhhhheeEEecC
Confidence 888888666677888888888888876
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.91 E-value=1.9e-26 Score=218.29 Aligned_cols=283 Identities=21% Similarity=0.162 Sum_probs=187.8
Q ss_pred CCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCC-CcCcccCCccCCCCCCCCEEe
Q 036216 4 SLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY-NNFQGPIPEGLQNLTSLKHLG 82 (695)
Q Consensus 4 ~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~ 82 (695)
..+.++|..|.|+.||+.+|..+++||.||||+|.|+.+ -|++|.++.+|.+|-+.+ |+|+....+.|.++..|+.|.
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I-~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFI-APDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhc-ChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 446788889999999999999999999999999999887 888898998887777665 888877778889999999999
Q ss_pred CCCCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccch-hhhh-------hhcccccc
Q 036216 83 LPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISE-ILEI-------FSGCVSNG 154 (695)
Q Consensus 83 L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~-------~~~~~~~~ 154 (695)
+.-|++..+..+.|..+++|..|.+.+|.+..+-...|..+..++++.+..|.+.....- +... .++...-
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc- 225 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC- 225 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee-
Confidence 999999888888899999999999999988855455888888888888888874321100 0000 0000000
Q ss_pred cceEEccCcccccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCC
Q 036216 155 LESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRD 234 (695)
Q Consensus 155 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 234 (695)
..-..+.+.++....+..|... ++.+ ..-....+...+.-|...|..+++|+.+++++|+++.+.+.+
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~--~esl----------~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~a 293 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCS--LESL----------PSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGA 293 (498)
T ss_pred cchHHHHHHHhcccchhhhhhh--HHhH----------HHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhh
Confidence 1111111111111111111111 1110 000001122234556667777777777777777777777777
Q ss_pred CCCCCCccEEEccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHhhcccccceeeccccccc
Q 036216 235 WIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIH 301 (695)
Q Consensus 235 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~ 301 (695)
|.....+++|+|..|.+...-...|..+..|+.|++++|+|+ .+...+|..+..|..|++-.|.+.
T Consensus 294 Fe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it-~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 294 FEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQIT-TVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred hcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeE-EEecccccccceeeeeehccCccc
Confidence 777777777777777766655566677777777777777776 555555666667777777666543
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=3.8e-22 Score=233.55 Aligned_cols=223 Identities=19% Similarity=0.174 Sum_probs=103.4
Q ss_pred CCEEEcccCCCccccChHHhhcccccceeecccccccccccCccccCccceEecccccceeecCCC--CCCCcEEEccCC
Q 036216 265 LQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLI--SSNLTVLELSGN 342 (695)
Q Consensus 265 L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~--~~~L~~L~l~~n 342 (695)
|+.|.+.++.+. .+|..+ ...+|+.|++.++.+...+.....+++|++|+++++...+.+|.. +++|+.|++++|
T Consensus 591 Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c 667 (1153)
T PLN03210 591 LRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDC 667 (1153)
T ss_pred cEEEEecCCCCC-CCCCcC--CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCC
Confidence 444555444443 444433 234455555555544443334444445555555444333333321 234555555554
Q ss_pred cCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCccee
Q 036216 343 SLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSG 422 (695)
Q Consensus 343 ~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 422 (695)
.....+|.. +..+++|+.|++++|.....+|..+ ++++|+.|++++|...+.+|.. .++|++|++++|.+.
T Consensus 668 ~~L~~lp~s----i~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~- 738 (1153)
T PLN03210 668 SSLVELPSS----IQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE- 738 (1153)
T ss_pred CCccccchh----hhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-
Confidence 433333322 2235555555555554333444433 4555556666555544344432 245555556555554
Q ss_pred eCCccccCCCCCcEEEcCCCccc------ccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCccc
Q 036216 423 TIPILLKNCTSLVTLDVGENEVF------GNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGT 496 (695)
Q Consensus 423 ~~~~~~~~l~~L~~L~l~~n~~~------~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~ 496 (695)
.+|..+ .+++|++|++.++... ..++......+++|+.|++++|...+.+|.+++++++|+.|++++|...+.
T Consensus 739 ~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~ 817 (1153)
T PLN03210 739 EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLET 817 (1153)
T ss_pred cccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCe
Confidence 334332 3455555555443210 011111111234566666666655555566666666666666666544334
Q ss_pred CChh
Q 036216 497 IPNC 500 (695)
Q Consensus 497 ~p~~ 500 (695)
+|..
T Consensus 818 LP~~ 821 (1153)
T PLN03210 818 LPTG 821 (1153)
T ss_pred eCCC
Confidence 4443
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=9.4e-22 Score=230.24 Aligned_cols=161 Identities=19% Similarity=0.219 Sum_probs=88.3
Q ss_pred CCccCCCCCCCCCEEECCCCCCCC-----CCCchhhcCC-CCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCCCCC
Q 036216 18 FPQLPVANFSTLTTLDLSHNQFDN-----SFVPAWVFGL-SRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSS 91 (695)
Q Consensus 18 ~~~~~~~~l~~L~~L~Ls~n~i~~-----~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 91 (695)
+...+|.++++|+.|.+..+.... ..+|..+..+ .+|+.|++.++.+. .+|..| ...+|++|++++|.+. .
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~ 625 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-K 625 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-c
Confidence 334566677777777665543210 1144444444 34677777666665 455555 3566777777776665 4
Q ss_pred chhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcccccccch
Q 036216 92 VPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTD 171 (695)
Q Consensus 92 ~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~ 171 (695)
++..+..+++|+.|+++++.....+| .++.+++|++|++++|.....+|. .++.+.+ |+.|++++|...+.+|.
T Consensus 626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~----si~~L~~-L~~L~L~~c~~L~~Lp~ 699 (1153)
T PLN03210 626 LWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPS----SIQYLNK-LEDLDMSRCENLEILPT 699 (1153)
T ss_pred cccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccch----hhhccCC-CCEEeCCCCCCcCccCC
Confidence 55556666677777776654333444 355666666666666554444443 3334444 55555555543333443
Q ss_pred hcCCCCCCCEEEccCCC
Q 036216 172 QLGQFKNLDSLDLSNNS 188 (695)
Q Consensus 172 ~l~~l~~L~~L~L~~n~ 188 (695)
.+ ++++|+.|++++|.
T Consensus 700 ~i-~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 700 GI-NLKSLYRLNLSGCS 715 (1153)
T ss_pred cC-CCCCCCEEeCCCCC
Confidence 33 45555555555543
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=4.4e-21 Score=207.71 Aligned_cols=262 Identities=26% Similarity=0.320 Sum_probs=163.2
Q ss_pred cceeecccccccccccCccccCccceEecccccceeecCCCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeeccc
Q 036216 290 LYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDR 369 (695)
Q Consensus 290 L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~ 369 (695)
-..|+++++.++..++.+. ++|+.|++.+|+++. +|..+++|++|++++|+++. +|.. .++|+.|++.+
T Consensus 203 ~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~-LP~lp~~Lk~LdLs~N~Lts-LP~l-------p~sL~~L~Ls~ 271 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTS-LPALPPELRTLEVSGNQLTS-LPVL-------PPGLLELSIFS 271 (788)
T ss_pred CcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCC-CCCCCCCCcEEEecCCccCc-ccCc-------ccccceeeccC
Confidence 3344555555543222222 245555555555443 34444566666666666553 2211 24566666666
Q ss_pred ccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCC
Q 036216 370 NILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIP 449 (695)
Q Consensus 370 n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 449 (695)
|.+. .+|.. .++|+.|++++|+++ .+|. ..++|+.|++++|++++ +|.. ..+|+.|++++|.+ ..+|
T Consensus 272 N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L-~~LP 338 (788)
T PRK15387 272 NPLT-HLPAL---PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQL-TSLP 338 (788)
T ss_pred Cchh-hhhhc---hhhcCEEECcCCccc-cccc---cccccceeECCCCcccc-CCCC---cccccccccccCcc-cccc
Confidence 6655 33332 245666777777766 3443 23567777777777663 3332 23466677777776 3455
Q ss_pred hhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCC
Q 036216 450 SWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIG 529 (695)
Q Consensus 450 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~ 529 (695)
. ...+|+.|++++|++++ +|.. ..+|+.|++++|+++ .+|...
T Consensus 339 ~----lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l~---------------------------- 381 (788)
T PRK15387 339 T----LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPALP---------------------------- 381 (788)
T ss_pred c----cccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCcccc----------------------------
Confidence 3 13467777777777763 4432 246677777777776 344311
Q ss_pred CCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECC
Q 036216 530 PGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFS 609 (695)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 609 (695)
..|+.|++++|++++ +|.. .++|+.|++++|+++ .+|.. ..+|+.|+++
T Consensus 382 -----------------------~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls 430 (788)
T PRK15387 382 -----------------------SGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVY 430 (788)
T ss_pred -----------------------cccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhc
Confidence 124788899999884 5543 357999999999998 56754 3568889999
Q ss_pred CCcccccCCcCCcCCCCCCEEEcccCcCcccCCCC
Q 036216 610 VNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSS 644 (695)
Q Consensus 610 ~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~iP~~ 644 (695)
+|+++ .+|..+..+++|+.|++++|+++|.+|..
T Consensus 431 ~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~ 464 (788)
T PRK15387 431 RNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA 464 (788)
T ss_pred cCccc-ccChHHhhccCCCeEECCCCCCCchHHHH
Confidence 99998 78999999999999999999999887763
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=7.9e-21 Score=205.78 Aligned_cols=266 Identities=25% Similarity=0.345 Sum_probs=191.6
Q ss_pred CCCEEEcccCCCccccChHHhhcccccceeecccccccccccCccccCccceEecccccceeecCCCCCCCcEEEccCCc
Q 036216 264 DLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNS 343 (695)
Q Consensus 264 ~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~ 343 (695)
.-..|+++++.++ .+|..+. ++|+.|++.+|+++..+ . ..++|++|++++|+++. +|..+++|+.|++++|.
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~LP-~--lp~~Lk~LdLs~N~Lts-LP~lp~sL~~L~Ls~N~ 273 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLP-A--LPPELRTLEVSGNQLTS-LPVLPPGLLELSIFSNP 273 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCCCC-C--CCCCCcEEEecCCccCc-ccCcccccceeeccCCc
Confidence 3456677777766 6666543 35777777777776432 2 23677777777777774 45556788888888887
Q ss_pred CCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceee
Q 036216 344 LSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGT 423 (695)
Q Consensus 344 l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 423 (695)
++. ++.. ..+|+.|++++|.++ .+|. ..++|+.|++++|++++ +|.. ...|+.|++++|++.+
T Consensus 274 L~~-Lp~l-------p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~- 336 (788)
T PRK15387 274 LTH-LPAL-------PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS- 336 (788)
T ss_pred hhh-hhhc-------hhhcCEEECcCCccc-cccc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc-
Confidence 763 2221 246778888888887 4454 24689999999998884 4542 2468888999998873
Q ss_pred CCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhh
Q 036216 424 IPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHN 503 (695)
Q Consensus 424 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 503 (695)
+|.. ..+|+.|++++|++. .+|. ..++|+.|++++|++.+ +|.. ..+|+.|++++|+++ .+|...
T Consensus 337 LP~l---p~~Lq~LdLS~N~Ls-~LP~----lp~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt-~LP~l~-- 401 (788)
T PRK15387 337 LPTL---PSGLQELSVSDNQLA-SLPT----LPSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT-SLPVLP-- 401 (788)
T ss_pred cccc---ccccceEecCCCccC-CCCC----CCcccceehhhcccccc-Cccc---ccccceEEecCCccc-CCCCcc--
Confidence 5532 257899999999884 5665 24678889999999884 5643 357899999999988 344321
Q ss_pred cccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEe
Q 036216 504 LTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLN 583 (695)
Q Consensus 504 l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 583 (695)
+.|+.|++++|++++ +|.. ..+|+.|+
T Consensus 402 -------------------------------------------------s~L~~LdLS~N~Lss-IP~l---~~~L~~L~ 428 (788)
T PRK15387 402 -------------------------------------------------SELKELMVSGNRLTS-LPML---PSGLLSLS 428 (788)
T ss_pred -------------------------------------------------cCCCEEEccCCcCCC-CCcc---hhhhhhhh
Confidence 124788999999984 6653 34688899
Q ss_pred ccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcC
Q 036216 584 LSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSS 623 (695)
Q Consensus 584 Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~ 623 (695)
+++|.++ .+|+.+.++++|+.|+|++|++++..|..+..
T Consensus 429 Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 429 VYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred hccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 9999998 78999999999999999999999888877644
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=4.5e-19 Score=193.67 Aligned_cols=201 Identities=26% Similarity=0.340 Sum_probs=89.4
Q ss_pred CCEEEcccCCCccccChHHhhcccccceeecccccccccccCccccCccceEecccccceeecCCCCCCCcEEEccCCcC
Q 036216 265 LQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSL 344 (695)
Q Consensus 265 L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l 344 (695)
...|++++++++ .+|..+ .+.++.|++++|.+...+..+. .+|++|++++|.+.......+.+|+.|++++|.+
T Consensus 180 ~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N~L 253 (754)
T PRK15370 180 KTELRLKILGLT-TIPACI---PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLPDTIQEMELSINRI 253 (754)
T ss_pred ceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhhccccEEECcCCcc
Confidence 345555555554 444432 1345555555555553322221 2455555555544422112233455555555555
Q ss_pred CCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeC
Q 036216 345 SGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTI 424 (695)
Q Consensus 345 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 424 (695)
. .+|..+. .+|+.|++++|.+. .+|..+. ++|+.|++++|++++ +|..+. ++|+.|++++|++.. +
T Consensus 254 ~-~LP~~l~------s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-L 319 (754)
T PRK15370 254 T-ELPERLP------SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-L 319 (754)
T ss_pred C-cCChhHh------CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-C
Confidence 4 2222211 24555555555555 3343322 355555555555552 333221 345555555555542 2
Q ss_pred CccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCc
Q 036216 425 PILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLS 494 (695)
Q Consensus 425 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~ 494 (695)
|..+ .++|+.|++++|.+. .+|..+ .++|+.|++++|++. .+|..+ .++|+.|++++|+++
T Consensus 320 P~~l--~~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt 380 (754)
T PRK15370 320 PETL--PPGLKTLEAGENALT-SLPASL---PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT 380 (754)
T ss_pred Cccc--cccceeccccCCccc-cCChhh---cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC
Confidence 3222 134555555555542 244332 234555555555544 233332 134555555555544
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=5.9e-19 Score=192.77 Aligned_cols=245 Identities=27% Similarity=0.398 Sum_probs=154.1
Q ss_pred cceEecccccceeecCCCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCC
Q 036216 313 LSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLS 392 (695)
Q Consensus 313 L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls 392 (695)
...|+++++.++......++.++.|++++|.++. +|... .++|+.|++++|.++ .+|..+. ++|+.|+++
T Consensus 180 ~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~Lts-LP~~l------~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 180 KTELRLKILGLTTIPACIPEQITTLILDNNELKS-LPENL------QGNIKTLYANSNQLT-SIPATLP--DTIQEMELS 249 (754)
T ss_pred ceEEEeCCCCcCcCCcccccCCcEEEecCCCCCc-CChhh------ccCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence 3445555554443222234456666666666653 22211 236667777777666 3454332 367777777
Q ss_pred CCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCccccc
Q 036216 393 NNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGP 472 (695)
Q Consensus 393 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 472 (695)
+|.+. .+|..+. .+|+.|++++|++. .+|..+. ++|+.|++++|.+. .+|..+ .++|+.|++++|+++.
T Consensus 250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~l---p~sL~~L~Ls~N~Lt~- 318 (754)
T PRK15370 250 INRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHL---PSGITHLNVQSNSLTA- 318 (754)
T ss_pred CCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccc---hhhHHHHHhcCCcccc-
Confidence 77776 4555443 46777777777776 4454442 46777777777763 455433 2357777777777763
Q ss_pred CCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhc
Q 036216 473 LPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEIL 552 (695)
Q Consensus 473 ~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (695)
+|..+ .++|+.|++++|.++ .+|..+.
T Consensus 319 LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l~-------------------------------------------------- 345 (754)
T PRK15370 319 LPETL--PPGLKTLEAGENALT-SLPASLP-------------------------------------------------- 345 (754)
T ss_pred CCccc--cccceeccccCCccc-cCChhhc--------------------------------------------------
Confidence 44433 257777888887776 3443221
Q ss_pred ccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCc----CCCCCC
Q 036216 553 NLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMS----SLTFLN 628 (695)
Q Consensus 553 ~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~----~l~~L~ 628 (695)
+.|+.|++++|+++ .+|..+. ++|++|+|++|.++ .+|..+. .+|+.|++++|++. .+|..+. .++.+.
T Consensus 346 ~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~ 418 (754)
T PRK15370 346 PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPT 418 (754)
T ss_pred CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCcc
Confidence 23478888888887 5665553 58888899988888 5666554 46888889998887 5666543 347788
Q ss_pred EEEcccCcCc
Q 036216 629 HLNLSNNYLT 638 (695)
Q Consensus 629 ~L~ls~N~l~ 638 (695)
.+++.+|+++
T Consensus 419 ~L~L~~Npls 428 (754)
T PRK15370 419 RIIVEYNPFS 428 (754)
T ss_pred EEEeeCCCcc
Confidence 8999999886
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.73 E-value=4.8e-19 Score=180.77 Aligned_cols=160 Identities=29% Similarity=0.268 Sum_probs=68.9
Q ss_pred CcEEEccCCcCCCccchhhhhhhhhccccceeecccccccC------CCCccccCCCCCCEEeCCCCcccccCCccccCC
Q 036216 334 LTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQG------KLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSL 407 (695)
Q Consensus 334 L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~------~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l 407 (695)
|+.++++++.+++.....++..+...+.+++++++++.+.+ .++..+..+++|+.|++++|.+.+..+..+..+
T Consensus 25 L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l 104 (319)
T cd00116 25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESL 104 (319)
T ss_pred ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHH
Confidence 44555555544433223333333344445555555554431 112233444555555555555543333333323
Q ss_pred CC---CcEEECcCCccee----eCCccccCC-CCCcEEEcCCCcccccCC----hhhhhcCCCCcEEEcCCCccccc---
Q 036216 408 SS---LVSLHLRKNRLSG----TIPILLKNC-TSLVTLDVGENEVFGNIP----SWFGERFSRMVLLILRSNNFDGP--- 472 (695)
Q Consensus 408 ~~---L~~L~l~~n~l~~----~~~~~~~~l-~~L~~L~l~~n~~~~~~~----~~~~~~l~~L~~L~l~~n~~~~~--- 472 (695)
.+ |++|++++|++.+ .+...+..+ ++|+.|++++|.+.+... ..+ ..+++|++|++++|.+.+.
T Consensus 105 ~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~ 183 (319)
T cd00116 105 LRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL-RANRDLKELNLANNGIGDAGIR 183 (319)
T ss_pred hccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH-HhCCCcCEEECcCCCCchHHHH
Confidence 22 5555555555442 111223333 455555555555442111 111 1334455555555554421
Q ss_pred -CCccccCCCCCCEEeCCCCcCc
Q 036216 473 -LPTELCDLAFLQILDLADNNLS 494 (695)
Q Consensus 473 -~~~~l~~l~~L~~L~L~~n~l~ 494 (695)
++..+..+++|+.|++++|.++
T Consensus 184 ~l~~~l~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 184 ALAEGLKANCNLEVLDLNNNGLT 206 (319)
T ss_pred HHHHHHHhCCCCCEEeccCCccC
Confidence 1222333445555555555544
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=2.3e-18 Score=175.74 Aligned_cols=286 Identities=25% Similarity=0.279 Sum_probs=150.4
Q ss_pred EEEcCCCcCCCCC-ccCCCCCCCCCEEECCCCCCCCC---CCchhhcCCCCCCEEEcCCCcCcc------cCCccCCCCC
Q 036216 7 ELDLSNCQLHHFP-QLPVANFSTLTTLDLSHNQFDNS---FVPAWVFGLSRLHFLNLGYNNFQG------PIPEGLQNLT 76 (695)
Q Consensus 7 ~L~ls~~~l~~~~-~~~~~~l~~L~~L~Ls~n~i~~~---~~~~~~~~l~~L~~L~Ls~n~i~~------~~~~~~~~l~ 76 (695)
.|+|.++.+..-. ...|..+..|++|+++++.++.. .++..+...+.+++|+++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4666666665322 23455666788888888777431 133445566677788887776652 2234556677
Q ss_pred CCCEEeCCCCCCCCCchhhhcCCCC---CCEEEcccCcCCc----ccchhhcCC-CCCCEEEccCCcCccccchhhhhhh
Q 036216 77 SLKHLGLPFNHFSSSVPKWFDRLTH---LEHLSLSYNSLEG----RIPRSMARL-CNLRRLYLGGAKLNQEISEILEIFS 148 (695)
Q Consensus 77 ~L~~L~L~~n~l~~~~p~~~~~l~~---L~~L~Ls~n~l~~----~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~ 148 (695)
+|++|++++|.+.+..+..+..+.+ |++|++++|.+.+ .+...+..+ ++|+.|++++|.+++.....+...+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 7777777777776555555555554 7777777777662 223345555 6777777777777643333222233
Q ss_pred cccccccceEEccCcccccc----cchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEccc
Q 036216 149 GCVSNGLESLALASSSISGH----LTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGA 224 (695)
Q Consensus 149 ~~~~~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~ 224 (695)
..... |++|++++|.+.+. ++..+..+++|++|++++|.+.+.. ...+.. .+..+++|+.|++++
T Consensus 162 ~~~~~-L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~---------~~~l~~-~~~~~~~L~~L~ls~ 230 (319)
T cd00116 162 RANRD-LKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEG---------ASALAE-TLASLKSLEVLNLGD 230 (319)
T ss_pred HhCCC-cCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHH---------HHHHHH-HhcccCCCCEEecCC
Confidence 33333 66666666666532 2233444456666666666553110 000111 234455555555555
Q ss_pred ccceeecCCCCCCCCCccEEEccCCCCCCCCCccccCCCCCCEEEcccCCCccccCh---HHhhcccccceeeccccccc
Q 036216 225 NKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPN---RLLKSASQLYLLDLGHNQIH 301 (695)
Q Consensus 225 n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~---~~~~~l~~L~~L~l~~n~l~ 301 (695)
|.+.......+... .....+.|++|++++|.+++.... ..+..+++|+.+++++|.+.
T Consensus 231 n~l~~~~~~~l~~~-------------------~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 231 NNLTDAGAAALASA-------------------LLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred CcCchHHHHHHHHH-------------------HhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 55442111111000 000124566666666655421111 12233456677777777665
Q ss_pred cc----cc-Ccccc-CccceEeccccc
Q 036216 302 GE----LT-NLTKA-SQLSYLSLIANN 322 (695)
Q Consensus 302 ~~----~~-~~~~~-~~L~~L~l~~n~ 322 (695)
.. .. .+... +.++++++.+++
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 292 EEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 33 11 22222 466777766654
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.70 E-value=1.9e-19 Score=151.23 Aligned_cols=108 Identities=34% Similarity=0.603 Sum_probs=52.9
Q ss_pred CCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCE
Q 036216 25 NFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEH 104 (695)
Q Consensus 25 ~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 104 (695)
++.+.+.|.||+|+++. +|..+..+.+|++|++++|+|+ .+|..++.+++|++|+++-|++. .+|..|+.++.|+.
T Consensus 31 ~~s~ITrLtLSHNKl~~--vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTV--VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred chhhhhhhhcccCceee--cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence 33444455555555544 4444555555555555555554 44445555555555555555544 44555555555555
Q ss_pred EEcccCcCCc-ccchhhcCCCCCCEEEccCCcC
Q 036216 105 LSLSYNSLEG-RIPRSMARLCNLRRLYLGGAKL 136 (695)
Q Consensus 105 L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l 136 (695)
||+++|++.. .+|..|..+..|+.|+++.|.+
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndf 139 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF 139 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCc
Confidence 5555554432 3344444444444444444443
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=4.1e-18 Score=143.31 Aligned_cols=183 Identities=23% Similarity=0.453 Sum_probs=136.6
Q ss_pred CCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCE
Q 036216 406 SLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQI 485 (695)
Q Consensus 406 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 485 (695)
.+...+.|.+++|+++ .+|..++.+.+|+.|++++|++ ..+|..+. .+++|+.|++.-|++. ..|..|+.++.|+.
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqi-e~lp~~is-sl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQI-EELPTSIS-SLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchh-hhcChhhh-hchhhhheecchhhhh-cCccccCCCchhhh
Confidence 4455666666666666 4555566666667777766666 56666665 5777777777777765 67888888888899
Q ss_pred EeCCCCcCcc-cCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCcc
Q 036216 486 LDLADNNLSG-TIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNL 564 (695)
Q Consensus 486 L~L~~n~l~~-~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~ 564 (695)
||+.+|++.. .+|..|..++.| +-|+|+.|.
T Consensus 107 ldltynnl~e~~lpgnff~m~tl------------------------------------------------ralyl~dnd 138 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTL------------------------------------------------RALYLGDND 138 (264)
T ss_pred hhccccccccccCCcchhHHHHH------------------------------------------------HHHHhcCCC
Confidence 9998888763 456666666655 556678888
Q ss_pred ccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCC---CCEEEcccCcCcccC
Q 036216 565 FSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTF---LNHLNLSNNYLTGKI 641 (695)
Q Consensus 565 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~---L~~L~ls~N~l~~~i 641 (695)
+. .+|..++.+++|+.|.+..|.+. .+|..++.++.|+.|++.+|+++ .+|..++.+.- =+.+.+.+|++...|
T Consensus 139 fe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pI 215 (264)
T KOG0617|consen 139 FE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPI 215 (264)
T ss_pred cc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChH
Confidence 87 88889999999999999999998 88999999999999999999999 77877776542 245667788876555
Q ss_pred CC
Q 036216 642 PS 643 (695)
Q Consensus 642 P~ 643 (695)
-+
T Consensus 216 ae 217 (264)
T KOG0617|consen 216 AE 217 (264)
T ss_pred HH
Confidence 44
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.33 E-value=2.2e-12 Score=141.18 Aligned_cols=116 Identities=36% Similarity=0.640 Sum_probs=104.8
Q ss_pred ccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEccc
Q 036216 555 VRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSN 634 (695)
Q Consensus 555 l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~ 634 (695)
++.|+|++|.+.|.+|..++.+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|++++.+|+.+.++++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCcccCCCCc--ccCccccccccCC-cccCCCCCCCCC
Q 036216 635 NYLTGKIPSST--QLQSFNASCFLGN-NLCGAPLPKNCT 670 (695)
Q Consensus 635 N~l~~~iP~~~--~~~~~~~~~~~~n-~l~~~~~~~~c~ 670 (695)
|+++|.+|... .........+.+| .+|+.|....|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 99999999862 2234456678899 899987666785
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.30 E-value=6.3e-14 Score=140.19 Aligned_cols=195 Identities=27% Similarity=0.424 Sum_probs=155.2
Q ss_pred CCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEE
Q 036216 383 YQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLL 462 (695)
Q Consensus 383 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 462 (695)
+.--...|++.|++. .+|..+..+..|+.+.++.|.+. .+|..++++..|+.+|++.|++ ..+|..++ .--|+.|
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~Nql-S~lp~~lC--~lpLkvl 148 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQL-SHLPDGLC--DLPLKVL 148 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchh-hcCChhhh--cCcceeE
Confidence 344466789999998 78888888889999999999998 7888899999999999999998 67787775 4468889
Q ss_pred EcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEec
Q 036216 463 ILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTK 542 (695)
Q Consensus 463 ~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 542 (695)
.+++|+++ .+|..++....|..||.+.|++. .+|..+.++.+|
T Consensus 149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~sl----------------------------------- 191 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSL----------------------------------- 191 (722)
T ss_pred EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHH-----------------------------------
Confidence 99999987 77888888888999999999888 778777777776
Q ss_pred CCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCc
Q 036216 543 GVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMS 622 (695)
Q Consensus 543 ~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~ 622 (695)
+.|.+..|++. .+|+.+..+ .|..||+|+|++. .+|-+|.+|+.|++|.|.+|.+. ..|..+.
T Consensus 192 -------------r~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC 254 (722)
T KOG0532|consen 192 -------------RDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQIC 254 (722)
T ss_pred -------------HHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHH
Confidence 44456667766 677777744 6888899999888 88888888999999999888887 4555443
Q ss_pred ---CCCCCCEEEcccCc
Q 036216 623 ---SLTFLNHLNLSNNY 636 (695)
Q Consensus 623 ---~l~~L~~L~ls~N~ 636 (695)
...=.++|+...|+
T Consensus 255 ~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 255 EKGKVHIFKYLSTQACQ 271 (722)
T ss_pred hccceeeeeeecchhcc
Confidence 33445778888885
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.26 E-value=8.8e-12 Score=111.02 Aligned_cols=123 Identities=29% Similarity=0.319 Sum_probs=42.5
Q ss_pred EcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhc-CCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCC
Q 036216 9 DLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNH 87 (695)
Q Consensus 9 ~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 87 (695)
.+..+.|..++. +.+..++++|+|.+|.|+.+ +.+. .+.+|++|++++|.|+.. +.+..+++|++|++++|+
T Consensus 3 ~lt~~~i~~~~~--~~n~~~~~~L~L~~n~I~~I---e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~ 75 (175)
T PF14580_consen 3 RLTANMIEQIAQ--YNNPVKLRELNLRGNQISTI---ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNR 75 (175)
T ss_dssp --------------------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS-
T ss_pred cccccccccccc--cccccccccccccccccccc---cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCC
Confidence 344555666654 56677899999999999863 3354 578999999999999854 468889999999999999
Q ss_pred CCCCchhhhcCCCCCCEEEcccCcCCccc-chhhcCCCCCCEEEccCCcCcc
Q 036216 88 FSSSVPKWFDRLTHLEHLSLSYNSLEGRI-PRSMARLCNLRRLYLGGAKLNQ 138 (695)
Q Consensus 88 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~ 138 (695)
++...+.....+++|++|++++|+|.... -..++.+++|+.|++.+|++..
T Consensus 76 I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 76 ISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp --S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred CCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 99543332346899999999999987422 3567789999999999998864
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.25 E-value=1e-11 Score=130.36 Aligned_cols=123 Identities=33% Similarity=0.513 Sum_probs=57.5
Q ss_pred eeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCC-CCcEEECcCCcceeeCCccccCCCCCcEEEcCCC
Q 036216 364 FLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLS-SLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGEN 442 (695)
Q Consensus 364 ~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 442 (695)
.+....+.+.... ..+...+.++.|++.+|.++ .++....... +|+.|++++|++. .+|..+..++.|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 3445555442111 22333455666666666665 3333334442 5666666666655 33334455555555555555
Q ss_pred cccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCc
Q 036216 443 EVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNN 492 (695)
Q Consensus 443 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~ 492 (695)
++ ..+|.... ..+.|+.|++++|++. .+|........|+++.+++|+
T Consensus 174 ~l-~~l~~~~~-~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 174 DL-SDLPKLLS-NLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred hh-hhhhhhhh-hhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCc
Confidence 55 33333321 2444555555555554 333333333334444444443
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.23 E-value=3.1e-13 Score=135.34 Aligned_cols=195 Identities=26% Similarity=0.377 Sum_probs=157.3
Q ss_pred ccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEE
Q 036216 359 TMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLD 438 (695)
Q Consensus 359 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 438 (695)
+.--...+++.|.+. .+|..+..+..|+.+.+..|.+. .+|..+..+..|++++++.|+++ .+|..++.|+ |+.|-
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 334456788888887 77888888888999999988887 78888888999999999999988 7777777766 88899
Q ss_pred cCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcc
Q 036216 439 VGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAI 518 (695)
Q Consensus 439 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l 518 (695)
+++|++ +.+|..++ ..+.|..|+.+.|.+. .+|..++++.+|+.|.++.|++. .+|..+..++
T Consensus 150 ~sNNkl-~~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp------------- 212 (722)
T KOG0532|consen 150 VSNNKL-TSLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP------------- 212 (722)
T ss_pred EecCcc-ccCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-------------
Confidence 999988 78888887 7888999999999887 67778889999999999999888 6666555333
Q ss_pred cccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCcccc
Q 036216 519 EYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIG 598 (695)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~ 598 (695)
|..||+|+|+++ .+|-.|.+|+.|++|-|.+|.+. ..|..+.
T Consensus 213 ------------------------------------Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC 254 (722)
T KOG0532|consen 213 ------------------------------------LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQIC 254 (722)
T ss_pred ------------------------------------eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHH
Confidence 367899999998 88889999999999999999988 6676653
Q ss_pred ---CcCCCCEEECCCCc
Q 036216 599 ---TMRSLESIDFSVNK 612 (695)
Q Consensus 599 ---~l~~L~~L~Ls~n~ 612 (695)
...=.++|+..-|+
T Consensus 255 ~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 255 EKGKVHIFKYLSTQACQ 271 (722)
T ss_pred hccceeeeeeecchhcc
Confidence 34445677777774
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.18 E-value=1.5e-11 Score=109.56 Aligned_cols=124 Identities=31% Similarity=0.357 Sum_probs=54.0
Q ss_pred CCCcEEEcCCCcCCCCCccCCC-CCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccC-CCCCCCCE
Q 036216 3 PSLVELDLSNCQLHHFPQLPVA-NFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGL-QNLTSLKH 80 (695)
Q Consensus 3 ~~L~~L~ls~~~l~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~ 80 (695)
.++++|+|.+|.|+.|.. +. .+.+|+.|++++|.|+. ++ .+..+++|++|++++|+|+. +.+.+ ..+++|++
T Consensus 19 ~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N~I~~--l~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNNQITK--LE-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQE 92 (175)
T ss_dssp -----------------S----TT-TT--EEE-TTS--S----T-T----TT--EEE--SS---S--CHHHHHH-TT--E
T ss_pred cccccccccccccccccc--hhhhhcCCCEEECCCCCCcc--cc-CccChhhhhhcccCCCCCCc-cccchHHhCCcCCE
Confidence 468999999999999875 44 67899999999999997 43 47789999999999999995 44444 46899999
Q ss_pred EeCCCCCCCCC-chhhhcCCCCCCEEEcccCcCCccc---chhhcCCCCCCEEEcc
Q 036216 81 LGLPFNHFSSS-VPKWFDRLTHLEHLSLSYNSLEGRI---PRSMARLCNLRRLYLG 132 (695)
Q Consensus 81 L~L~~n~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~L~ 132 (695)
|++++|++... .-..+..+++|++|++.+|.+.... ...+..+|+|+.||-.
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 99999999753 1245788999999999999987431 2346789999998754
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.16 E-value=4.3e-11 Score=125.61 Aligned_cols=129 Identities=35% Similarity=0.463 Sum_probs=70.7
Q ss_pred cccceeecccccccCCCCccccCCC-CCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEE
Q 036216 360 MKLKFLFLDRNILQGKLPDCWMSYQ-NLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLD 438 (695)
Q Consensus 360 ~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 438 (695)
+.++.+++.+|.++ .++....... +|+.|++++|++. .+|..+..+++|+.|++++|++. .+|......+.|+.|+
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence 45666666666665 3333344442 6666666666665 34344556666666666666665 3333333556666666
Q ss_pred cCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCc
Q 036216 439 VGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLS 494 (695)
Q Consensus 439 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~ 494 (695)
+++|.+ ..+|.... ....|+++.+++|+.. ..+..+..+.++..+.+.+|++.
T Consensus 193 ls~N~i-~~l~~~~~-~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~ 245 (394)
T COG4886 193 LSGNKI-SDLPPEIE-LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE 245 (394)
T ss_pred ccCCcc-ccCchhhh-hhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee
Confidence 666666 45554432 2344666666666433 23344555555555555555554
No 30
>PLN03150 hypothetical protein; Provisional
Probab=99.13 E-value=8.6e-11 Score=128.81 Aligned_cols=114 Identities=32% Similarity=0.583 Sum_probs=90.0
Q ss_pred CCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcC
Q 036216 482 FLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFS 561 (695)
Q Consensus 482 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls 561 (695)
.++.|+|++|.+.|.+|..+..+++| +.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L------------------------------------------------~~L~Ls 450 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHL------------------------------------------------QSINLS 450 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCC------------------------------------------------CEEECC
Confidence 36778888888888888777766665 677888
Q ss_pred CccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCC-CCCCEEEcccCcCccc
Q 036216 562 KNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSL-TFLNHLNLSNNYLTGK 640 (695)
Q Consensus 562 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~ls~N~l~~~ 640 (695)
+|.+.|.+|..++.+++|+.|+|++|++++.+|+.++++++|+.|+|++|++++.+|..+..+ .++..+++.+|+..+.
T Consensus 451 ~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 451 GNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred CCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccC
Confidence 888888888888888888888888888888888888888888888888888888888877653 4667888888876555
Q ss_pred CCC
Q 036216 641 IPS 643 (695)
Q Consensus 641 iP~ 643 (695)
+|.
T Consensus 531 ~p~ 533 (623)
T PLN03150 531 IPG 533 (623)
T ss_pred CCC
Confidence 553
No 31
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.09 E-value=1.8e-11 Score=115.97 Aligned_cols=250 Identities=24% Similarity=0.313 Sum_probs=127.4
Q ss_pred CCCcEEEccCCcCCCccchhhhhhhhhccccceeeccccc---ccCCCCc-------cccCCCCCCEEeCCCCcccccCC
Q 036216 332 SNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNI---LQGKLPD-------CWMSYQNLMALDLSNNKFTGNLP 401 (695)
Q Consensus 332 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~---l~~~~~~-------~~~~~~~L~~L~ls~n~~~~~~~ 401 (695)
.+++.+++++|.+...-...++..+...+.|+..++++-- ....+|. ++..++.|++|+||+|-+....+
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 4667777777777666566666666666677776666532 1122232 23445566666666666543333
Q ss_pred cc----ccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCccccc----C
Q 036216 402 TS----LGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGP----L 473 (695)
Q Consensus 402 ~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~----~ 473 (695)
.. +..+..|+.|.|.+|.+...-...++. .|..|. .+ ..+ ..-+.|+++...+|++... +
T Consensus 110 ~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~~---kk~-----~~~~~Lrv~i~~rNrlen~ga~~~ 177 (382)
T KOG1909|consen 110 RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--VN---KKA-----ASKPKLRVFICGRNRLENGGATAL 177 (382)
T ss_pred HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--HH---hcc-----CCCcceEEEEeeccccccccHHHH
Confidence 22 234556666666666554111111000 000000 00 000 0233444444444444321 1
Q ss_pred CccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcc
Q 036216 474 PTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILN 553 (695)
Q Consensus 474 ~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (695)
...|...+.|+.+.+..|.|. |... +.+ ..-...++
T Consensus 178 A~~~~~~~~leevr~~qN~I~---~eG~---~al--------------------------------------~eal~~~~ 213 (382)
T KOG1909|consen 178 AEAFQSHPTLEEVRLSQNGIR---PEGV---TAL--------------------------------------AEALEHCP 213 (382)
T ss_pred HHHHHhccccceEEEeccccc---Cchh---HHH--------------------------------------HHHHHhCC
Confidence 122334445555555555443 1100 000 00011223
Q ss_pred cccEEEcCCccccc----cCCccccCCCCCCEEeccCCcccccCCccc-----cCcCCCCEEECCCCcccc----cCCcC
Q 036216 554 LVRIIDFSKNLFSG----TLPMGLTNLKAVQSLNLSYNIFTGRIPETI-----GTMRSLESIDFSVNKFTG----EIPQS 620 (695)
Q Consensus 554 ~l~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-----~~l~~L~~L~Ls~n~l~~----~~p~~ 620 (695)
.|+.|||..|-++. .+...++.+++|++|++++|.+......+| ...++|++|.+.+|.++. .+...
T Consensus 214 ~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~ 293 (382)
T KOG1909|consen 214 HLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAAC 293 (382)
T ss_pred cceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHH
Confidence 33555555555542 223445667788888888888765544433 236789999999998864 23344
Q ss_pred CcCCCCCCEEEcccCcC
Q 036216 621 MSSLTFLNHLNLSNNYL 637 (695)
Q Consensus 621 l~~l~~L~~L~ls~N~l 637 (695)
+...+.|.+|+|++|.+
T Consensus 294 ~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 294 MAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HhcchhhHHhcCCcccc
Confidence 56688899999999988
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.8e-11 Score=119.12 Aligned_cols=144 Identities=26% Similarity=0.214 Sum_probs=80.9
Q ss_pred hhhhhhhhhccccceeecccccccCCCC--ccccCCCCCCEEeCCCCcccc--cCCccccCCCCCcEEECcCCcceeeCC
Q 036216 350 HFLCYTINETMKLKFLFLDRNILQGKLP--DCWMSYQNLMALDLSNNKFTG--NLPTSLGSLSSLVSLHLRKNRLSGTIP 425 (695)
Q Consensus 350 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~~~~L~~L~ls~n~~~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~ 425 (695)
+.+...=.++.+|+++.+.++... ..+ .....|++++.||++.|-+.. .+......+|+|+.|+++.|++.....
T Consensus 111 Dki~akQsn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~ 189 (505)
T KOG3207|consen 111 DKIAAKQSNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS 189 (505)
T ss_pred HHHHHHhhhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc
Confidence 333333345667777777777665 222 245567788888888776653 122334567778888888877653221
Q ss_pred c-cccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCc
Q 036216 426 I-LLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLS 494 (695)
Q Consensus 426 ~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~ 494 (695)
. .-..++.|+.|.++.|.++..--.++...+|+|+.|++..|.....-.....-+..|+.|||++|++.
T Consensus 190 s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li 259 (505)
T KOG3207|consen 190 SNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI 259 (505)
T ss_pred ccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc
Confidence 1 11235666777777776654434444445666666666666422222222333455666666666554
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.06 E-value=3.5e-11 Score=111.22 Aligned_cols=84 Identities=24% Similarity=0.354 Sum_probs=58.6
Q ss_pred ccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccC-CcCCcCCCCCCEEEcc
Q 036216 555 VRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEI-PQSMSSLTFLNHLNLS 633 (695)
Q Consensus 555 l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~ls 633 (695)
|+.||||+|.++ .+..+-..+.+.++|.|++|.+. .+ ..++.+-+|..||+++|+|.... -.++++++.|+.+.|.
T Consensus 331 L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE-~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~ 407 (490)
T KOG1259|consen 331 LQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE-TL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLT 407 (490)
T ss_pred ceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh-hh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhc
Confidence 356666666665 33333345667788888888876 33 34677888888888888887432 2467888888889999
Q ss_pred cCcCcccC
Q 036216 634 NNYLTGKI 641 (695)
Q Consensus 634 ~N~l~~~i 641 (695)
+|++.+.+
T Consensus 408 ~NPl~~~v 415 (490)
T KOG1259|consen 408 GNPLAGSV 415 (490)
T ss_pred CCCccccc
Confidence 99888543
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.06 E-value=3.1e-11 Score=111.54 Aligned_cols=133 Identities=27% Similarity=0.305 Sum_probs=80.1
Q ss_pred CCCCCEEeCCCCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccc
Q 036216 75 LTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNG 154 (695)
Q Consensus 75 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~ 154 (695)
...|+++|||+|.|+ .+.+++.-.++++.|++|+|.+... ..+..+++|+.|||++|.++.... +..++.+
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~G-----wh~KLGN- 353 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVG-----WHLKLGN- 353 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhh-----hHhhhcC-
Confidence 356667777777666 4445555666777777777766622 336666777777777766543211 3333444
Q ss_pred cceEEccCcccccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeec
Q 036216 155 LESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKV 231 (695)
Q Consensus 155 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~ 231 (695)
++.|.|+.|.+... ..++.+-+|..||+++|+|...+.. ..++++|.|+.+.+.+|.+....
T Consensus 354 IKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV-------------~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 354 IKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEV-------------NHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred EeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHh-------------cccccccHHHHHhhcCCCccccc
Confidence 67777777766542 2245556677777777777533211 14677777777777777776543
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.00 E-value=1.4e-10 Score=109.91 Aligned_cols=37 Identities=24% Similarity=0.250 Sum_probs=20.1
Q ss_pred cCCCCCCEEEcCCCcCccc----CCccCCCCCCCCEEeCCC
Q 036216 49 FGLSRLHFLNLGYNNFQGP----IPEGLQNLTSLKHLGLPF 85 (695)
Q Consensus 49 ~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~ 85 (695)
..+..++.++|++|.+... +...+.+.+.|+..+++.
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd 67 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD 67 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh
Confidence 3455666666666665532 223444555666666554
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=1.3e-10 Score=113.26 Aligned_cols=184 Identities=23% Similarity=0.258 Sum_probs=96.3
Q ss_pred CCCccEEEccCCCCCCCCC-ccccCCCCCCEEEcccCCCccccC-hHHhhcccccceeecccccccccccCccccCccce
Q 036216 238 PFQLIELGLRSCDVGSRFP-LWLYSQKDLQFLDLFNSGISGTFP-NRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSY 315 (695)
Q Consensus 238 ~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~i~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~ 315 (695)
+.+|+++.+.++....... .....+++++.|+++.|-+..-.+ ..+...+|+|+.|+++.|++...+.+
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s--------- 190 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS--------- 190 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc---------
Confidence 4456666666655442221 123344555555555554431111 12233444555555555444322211
Q ss_pred EecccccceeecCCCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCc
Q 036216 316 LSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNK 395 (695)
Q Consensus 316 L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~ 395 (695)
.....++.++.|.++.|.++. .........+|+|+.|.+..|............+..|++|||++|.
T Consensus 191 ----------~~~~~l~~lK~L~l~~CGls~---k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~ 257 (505)
T KOG3207|consen 191 ----------NTTLLLSHLKQLVLNSCGLSW---KDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN 257 (505)
T ss_pred ----------cchhhhhhhheEEeccCCCCH---HHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc
Confidence 111234567777777777663 2222233357788888888885332333344456778888888888
Q ss_pred ccccCC--ccccCCCCCcEEECcCCcceeeC-Ccc-----ccCCCCCcEEEcCCCcc
Q 036216 396 FTGNLP--TSLGSLSSLVSLHLRKNRLSGTI-PIL-----LKNCTSLVTLDVGENEV 444 (695)
Q Consensus 396 ~~~~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~-----~~~l~~L~~L~l~~n~~ 444 (695)
+.. .+ ...+.++.|+.|+++.|.+..+- |+. ...+++|+.|++..|++
T Consensus 258 li~-~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 258 LID-FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred ccc-cccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 763 33 34566788888888888776322 221 23345556666655555
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.99 E-value=3.5e-10 Score=126.48 Aligned_cols=128 Identities=25% Similarity=0.285 Sum_probs=80.2
Q ss_pred CCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCC--CCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEE
Q 036216 4 SLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQ--FDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHL 81 (695)
Q Consensus 4 ~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~--i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 81 (695)
..++..+-++.+..++... ..+.|++|-+..|. +..+ .+++|..++.|++|||++|.--+.+|+.++.+.+||+|
T Consensus 524 ~~rr~s~~~~~~~~~~~~~--~~~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEHIAGSS--ENPKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred heeEEEEeccchhhccCCC--CCCccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 3455666666666555422 23467777766664 4432 34445567777777777666555677777777777777
Q ss_pred eCCCCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCc
Q 036216 82 GLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAK 135 (695)
Q Consensus 82 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 135 (695)
++++..+. .+|..++++..|.+|++..+.-....|.....+.+||+|.+....
T Consensus 601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 77777776 567777777777777777665444445556667777777665543
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.95 E-value=1.2e-09 Score=122.18 Aligned_cols=112 Identities=23% Similarity=0.272 Sum_probs=94.4
Q ss_pred CCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCc--CcccCCccCCCCCCCCEEeCCCCCCCCCchhhhcCCC
Q 036216 23 VANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNN--FQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLT 100 (695)
Q Consensus 23 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 100 (695)
..+....|...+.+|.+.. ++... .++.|++|-+..|. +.....+.|..++.|++|||++|.-.+.+|..++.+.
T Consensus 519 ~~~~~~~rr~s~~~~~~~~--~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li 595 (889)
T KOG4658|consen 519 VKSWNSVRRMSLMNNKIEH--IAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELV 595 (889)
T ss_pred ccchhheeEEEEeccchhh--ccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhh
Confidence 3455778999999998865 44443 56689999999996 5645566689999999999999987779999999999
Q ss_pred CCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCcc
Q 036216 101 HLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQ 138 (695)
Q Consensus 101 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 138 (695)
+||+|++++..++ .+|.+++++.+|.+|++..+.-..
T Consensus 596 ~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~ 632 (889)
T KOG4658|consen 596 HLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLE 632 (889)
T ss_pred hhhcccccCCCcc-ccchHHHHHHhhheeccccccccc
Confidence 9999999999999 899999999999999999876433
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.94 E-value=7.6e-10 Score=80.94 Aligned_cols=61 Identities=38% Similarity=0.523 Sum_probs=41.0
Q ss_pred CCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccCcC
Q 036216 577 KAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYL 637 (695)
Q Consensus 577 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l 637 (695)
++|++|++++|+++...++.|.++++|++|++++|+++...|.+|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3566677777766655556666777777777777777666666677777777777777654
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.87 E-value=1.7e-09 Score=79.02 Aligned_cols=61 Identities=26% Similarity=0.422 Sum_probs=56.8
Q ss_pred ccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcc
Q 036216 553 NLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKF 613 (695)
Q Consensus 553 ~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l 613 (695)
+.|++|++++|+++...+..|.++++|++|++++|+++...|+.|.++++|+.|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3579999999999987778999999999999999999988889999999999999999985
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.78 E-value=8.5e-10 Score=115.80 Aligned_cols=128 Identities=30% Similarity=0.449 Sum_probs=76.6
Q ss_pred CCCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEe
Q 036216 3 PSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLG 82 (695)
Q Consensus 3 ~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 82 (695)
..++.+++..|.+..+.. .+..+++|+.|++.+|.|.. +...+..+++|++|++++|.|+.+ ..+..++.|+.|+
T Consensus 72 ~~l~~l~l~~n~i~~~~~-~l~~~~~l~~l~l~~n~i~~--i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKILN-HLSKLKSLEALDLYDNKIEK--IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELN 146 (414)
T ss_pred HhHHhhccchhhhhhhhc-ccccccceeeeeccccchhh--cccchhhhhcchheeccccccccc--cchhhccchhhhe
Confidence 344555555565555222 35566677777777777765 333355667777777777777644 3455566677777
Q ss_pred CCCCCCCCCchhhhcCCCCCCEEEcccCcCCcccc-hhhcCCCCCCEEEccCCcCcc
Q 036216 83 LPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIP-RSMARLCNLRRLYLGGAKLNQ 138 (695)
Q Consensus 83 L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~ 138 (695)
+++|.++.. ..+..++.|+.+++++|.+...-+ . ...+.+++.+.+++|.+..
T Consensus 147 l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 147 LSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE 200 (414)
T ss_pred eccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc
Confidence 777776633 335556677777777776663322 1 4566666666776666543
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.74 E-value=1.8e-09 Score=113.29 Aligned_cols=173 Identities=31% Similarity=0.336 Sum_probs=131.7
Q ss_pred CCCCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEE
Q 036216 2 LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHL 81 (695)
Q Consensus 2 l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 81 (695)
+++++.|++.+|.|..+.. .+..+.+|++|++++|.|+.+ ..+..++.|+.|++++|.|... ..+..++.|+.+
T Consensus 94 ~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i---~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l 167 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKL---EGLSTLTLLKELNLSGNLISDI--SGLESLKSLKLL 167 (414)
T ss_pred ccceeeeeccccchhhccc-chhhhhcchheeccccccccc---cchhhccchhhheeccCcchhc--cCCccchhhhcc
Confidence 6789999999999999875 277899999999999999874 3466788899999999999844 567779999999
Q ss_pred eCCCCCCCCCch-hhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhccccc-ccceEE
Q 036216 82 GLPFNHFSSSVP-KWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSN-GLESLA 159 (695)
Q Consensus 82 ~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~-~L~~L~ 159 (695)
++++|++..+.+ . ...+.+++.+++.+|.+.. ...+..+..+..+++..|.++..-+.. .... .|+.++
T Consensus 168 ~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~~~~~l~------~~~~~~L~~l~ 238 (414)
T KOG0531|consen 168 DLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKISKLEGLN------ELVMLHLRELY 238 (414)
T ss_pred cCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhcccccceeccCcc------cchhHHHHHHh
Confidence 999999996544 2 5788999999999999873 344555566666688888776432210 0000 267788
Q ss_pred ccCcccccccchhcCCCCCCCEEEccCCCcC
Q 036216 160 LASSSISGHLTDQLGQFKNLDSLDLSNNSIV 190 (695)
Q Consensus 160 L~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~ 190 (695)
+++|.+.... ..+..+..+..|++..|++.
T Consensus 239 l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 239 LSGNRISRSP-EGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred cccCcccccc-ccccccccccccchhhcccc
Confidence 8888776532 44666777888888888765
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=7.7e-09 Score=95.98 Aligned_cols=134 Identities=24% Similarity=0.255 Sum_probs=90.9
Q ss_pred CCCCEEEcCCCcCccc-CCccCCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEEcccCc-CCcc-cchhhcCCCCCCE
Q 036216 52 SRLHFLNLGYNNFQGP-IPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNS-LEGR-IPRSMARLCNLRR 128 (695)
Q Consensus 52 ~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~-~~~~~~~l~~L~~ 128 (695)
+.|++|||++..|+.. ....++.|.+|+.|.+.++++.+.+...+.+-.+|+.|+++.+. ++.. .--.+..++.|+.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 3588888888887742 33456778888888888888887777788888888888888875 3311 1234678888888
Q ss_pred EEccCCcCccccchhhhhhhcccccccceEEccCcccc---cccchhcCCCCCCCEEEccCCC
Q 036216 129 LYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSIS---GHLTDQLGQFKNLDSLDLSNNS 188 (695)
Q Consensus 129 L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~---~~~~~~l~~l~~L~~L~L~~n~ 188 (695)
|+++++.+......+ .......+|+.|+++++.-. ..+..-...+++|.+|||+.|.
T Consensus 265 LNlsWc~l~~~~Vtv---~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v 324 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTV---AVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSV 324 (419)
T ss_pred cCchHhhccchhhhH---HHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccc
Confidence 888888776544332 34445555888888876421 1222233467788888887764
No 44
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.38 E-value=2e-08 Score=82.21 Aligned_cols=84 Identities=26% Similarity=0.421 Sum_probs=52.0
Q ss_pred cEEEcCCccccccCCccccC-CCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEccc
Q 036216 556 RIIDFSKNLFSGTLPMGLTN-LKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSN 634 (695)
Q Consensus 556 ~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~ 634 (695)
+..+|++|.+. ..|+.|.. ++.++.|++++|.+. .+|+.++.+++|+.|+++.|.+. ..|..+..|.++..||..+
T Consensus 56 ~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 56 TKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred EEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCC
Confidence 45566666665 44444433 346666777777766 56666677777777777777766 5666666666666666666
Q ss_pred CcCcccCCC
Q 036216 635 NYLTGKIPS 643 (695)
Q Consensus 635 N~l~~~iP~ 643 (695)
|.+. .||.
T Consensus 133 na~~-eid~ 140 (177)
T KOG4579|consen 133 NARA-EIDV 140 (177)
T ss_pred Cccc-cCcH
Confidence 6554 3443
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.32 E-value=1.2e-08 Score=105.93 Aligned_cols=128 Identities=25% Similarity=0.292 Sum_probs=76.7
Q ss_pred CCCEEeCCCCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccc
Q 036216 77 SLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLE 156 (695)
Q Consensus 77 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~ 156 (695)
.|.+.+.++|.+. .+..++.-++.|++|+|++|++... ..+..+++|++|||++|.+..... ++.....|.
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~------l~~~gc~L~ 235 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQ------LSMVGCKLQ 235 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccc------cchhhhhhe
Confidence 5666666677666 4555666667777777777777633 366677777777777776654321 111222266
Q ss_pred eEEccCcccccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccce
Q 036216 157 SLALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLT 228 (695)
Q Consensus 157 ~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~ 228 (695)
.|.+++|.++.. ..+.++.+|+.||+++|-+.+.. ++. .+..+..|+.|++.+|.+.
T Consensus 236 ~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hs-----------eL~--pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 236 LLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHS-----------ELE--PLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eeeecccHHHhh--hhHHhhhhhhccchhHhhhhcch-----------hhh--HHHHHHHHHHHhhcCCccc
Confidence 777777766543 23566777777777777665332 111 2444556666666666654
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=1.2e-07 Score=88.25 Aligned_cols=42 Identities=21% Similarity=0.164 Sum_probs=21.0
Q ss_pred CCCCCCEEEcccCCCccccChHHhhcccccceeecccccccc
Q 036216 261 SQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHG 302 (695)
Q Consensus 261 ~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~ 302 (695)
.++.+..|+++.++|..--.-..+..+++|..|.++++.+..
T Consensus 222 ~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 222 PFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred CCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 344444555555555422222334455666666666665543
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.30 E-value=9.8e-09 Score=106.46 Aligned_cols=126 Identities=27% Similarity=0.349 Sum_probs=87.5
Q ss_pred CcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCC
Q 036216 5 LVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLP 84 (695)
Q Consensus 5 L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 84 (695)
|.+.+++.|.++.++. ++.-++.|+.|||++|+++.. +.+..|++|++|||++|.+.....-....+. |+.|.++
T Consensus 166 L~~a~fsyN~L~~mD~-SLqll~ale~LnLshNk~~~v---~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDE-SLQLLPALESLNLSHNKFTKV---DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred HhhhhcchhhHHhHHH-HHHHHHHhhhhccchhhhhhh---HHHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence 4556677777776654 667777888888888888753 3677888888888888888743323344444 8888888
Q ss_pred CCCCCCCchhhhcCCCCCCEEEcccCcCCccc-chhhcCCCCCCEEEccCCcCc
Q 036216 85 FNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRI-PRSMARLCNLRRLYLGGAKLN 137 (695)
Q Consensus 85 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~ 137 (695)
+|.++.. ..+.++.+|+.||+++|-+.+.- -.-+..+..|+.|.|.||++-
T Consensus 241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 8887743 45778888888888888766421 123456677788888888763
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=5.3e-08 Score=90.55 Aligned_cols=160 Identities=23% Similarity=0.206 Sum_probs=115.3
Q ss_pred CCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCCCCC--chhhhcCCCCCCEE
Q 036216 28 TLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSS--VPKWFDRLTHLEHL 105 (695)
Q Consensus 28 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L 105 (695)
.|++||||+..|+...+-..+..|.+|+.|.|.++++...+...+..-.+|+.|+++.+.--.. .---|.+|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 5899999999887654555677899999999999999887778888899999999998743211 11246789999999
Q ss_pred EcccCcCCcccchhh-c-CCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcc-cccccchhcCCCCCCCEE
Q 036216 106 SLSYNSLEGRIPRSM-A-RLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSS-ISGHLTDQLGQFKNLDSL 182 (695)
Q Consensus 106 ~Ls~n~l~~~~~~~~-~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~l~~L~~L 182 (695)
+++.|.+........ . --++|+.|+++|.+-. .....++.....+++ +.+|+|+.|. ++......|..++.|++|
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrn-l~~sh~~tL~~rcp~-l~~LDLSD~v~l~~~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRN-LQKSHLSTLVRRCPN-LVHLDLSDSVMLKNDCFQEFFKFNYLQHL 343 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhh-hhhhHHHHHHHhCCc-eeeeccccccccCchHHHHHHhcchheee
Confidence 999998764332222 1 1257888999886421 111122324445555 9999999875 455556678889999999
Q ss_pred EccCCCc
Q 036216 183 DLSNNSI 189 (695)
Q Consensus 183 ~L~~n~i 189 (695)
.++.|+.
T Consensus 344 SlsRCY~ 350 (419)
T KOG2120|consen 344 SLSRCYD 350 (419)
T ss_pred ehhhhcC
Confidence 9999874
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.22 E-value=1e-06 Score=81.07 Aligned_cols=87 Identities=17% Similarity=0.197 Sum_probs=41.6
Q ss_pred CCCCCCEEEcCCCcCcccC----CccCCCCCCCCEEeCCCCCCC---CCc-------hhhhcCCCCCCEEEcccCcCCcc
Q 036216 50 GLSRLHFLNLGYNNFQGPI----PEGLQNLTSLKHLGLPFNHFS---SSV-------PKWFDRLTHLEHLSLSYNSLEGR 115 (695)
Q Consensus 50 ~l~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~---~~~-------p~~~~~l~~L~~L~Ls~n~l~~~ 115 (695)
.+..++.++||+|.|...- ...+.+-++|+..+++.-... ..+ -.++-+|++|+..+||.|.+...
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 4566666777777665432 223344456666655543111 011 12334555555555555555433
Q ss_pred cch----hhcCCCCCCEEEccCCcC
Q 036216 116 IPR----SMARLCNLRRLYLGGAKL 136 (695)
Q Consensus 116 ~~~----~~~~l~~L~~L~L~~n~l 136 (695)
.|. .+++-+.|.+|.+++|.+
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCC
Confidence 332 233444555555555543
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.22 E-value=5.4e-08 Score=79.75 Aligned_cols=103 Identities=30% Similarity=0.429 Sum_probs=58.5
Q ss_pred EEEcCCCcCCCCCc--cCCCCCCCCCEEECCCCCCCCCCCchhhc-CCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeC
Q 036216 7 ELDLSNCQLHHFPQ--LPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGL 83 (695)
Q Consensus 7 ~L~ls~~~l~~~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 83 (695)
.++|+.|.+-.++. ..+....+|+..+|++|.+.. +|..|. ..+-+++|++++|.|. .+|..+..++.|+.|++
T Consensus 31 ~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~--fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 31 FLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKK--FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNL 107 (177)
T ss_pred hcccccchhhHHHHHHHHHhCCceEEEEecccchhhh--CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhccc
Confidence 45566665554443 223344455556666666655 444443 3445666666666666 45555666666666666
Q ss_pred CCCCCCCCchhhhcCCCCCCEEEcccCcCC
Q 036216 84 PFNHFSSSVPKWFDRLTHLEHLSLSYNSLE 113 (695)
Q Consensus 84 ~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~ 113 (695)
+.|.+. ..|..|..+.+|-.|+..+|.+.
T Consensus 108 ~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 108 RFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred ccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 666665 45555555666666666666555
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.17 E-value=8.3e-07 Score=81.64 Aligned_cols=113 Identities=22% Similarity=0.256 Sum_probs=70.9
Q ss_pred CCCCCCEEECCCCCCCCCCCchh----hcCCCCCCEEEcCCCcCc---cc-------CCccCCCCCCCCEEeCCCCCCCC
Q 036216 25 NFSTLTTLDLSHNQFDNSFVPAW----VFGLSRLHFLNLGYNNFQ---GP-------IPEGLQNLTSLKHLGLPFNHFSS 90 (695)
Q Consensus 25 ~l~~L~~L~Ls~n~i~~~~~~~~----~~~l~~L~~L~Ls~n~i~---~~-------~~~~~~~l~~L~~L~L~~n~l~~ 90 (695)
-+..++.+|||+|.|... -..+ +.+-.+|++.+++.-... .. +-.++-+|++|+..+||.|.+..
T Consensus 28 ~~d~~~evdLSGNtigtE-A~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 28 MMDELVEVDLSGNTIGTE-AMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred hhcceeEEeccCCcccHH-HHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 356777888888887653 2222 335567777777654221 11 22355678888888888888876
Q ss_pred Cchh----hhcCCCCCCEEEcccCcCCcccchhh-------------cCCCCCCEEEccCCcCcc
Q 036216 91 SVPK----WFDRLTHLEHLSLSYNSLEGRIPRSM-------------ARLCNLRRLYLGGAKLNQ 138 (695)
Q Consensus 91 ~~p~----~~~~l~~L~~L~Ls~n~l~~~~~~~~-------------~~l~~L~~L~L~~n~l~~ 138 (695)
..|. .++.-+.|.+|.+++|.+.-+-...+ .+-+.|++.....|++..
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen 171 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN 171 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc
Confidence 6554 34566788888888887652222222 234667777777777654
No 52
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.04 E-value=2.1e-05 Score=79.23 Aligned_cols=55 Identities=16% Similarity=0.145 Sum_probs=27.9
Q ss_pred CCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCC
Q 036216 382 SYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGEN 442 (695)
Q Consensus 382 ~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 442 (695)
.+.+++.|++++|.++ .+|. -.++|+.|.+++|.-...+|..+ .++|+.|++++|
T Consensus 50 ~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 50 EARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 3566666677666555 3441 12356666666554333444332 234555555554
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.95 E-value=6.5e-06 Score=54.74 Aligned_cols=36 Identities=28% Similarity=0.534 Sum_probs=16.1
Q ss_pred CCCEEeccCCcccccCCccccCcCCCCEEECCCCccc
Q 036216 578 AVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFT 614 (695)
Q Consensus 578 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~ 614 (695)
+|++|++++|+++ .+|..+++|++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444555555444 33333444555555555555444
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=4.1e-06 Score=78.28 Aligned_cols=39 Identities=23% Similarity=0.246 Sum_probs=16.9
Q ss_pred hhCCCCCCEEEcccccceeecCCCCCCCCCccEEEccCC
Q 036216 211 FANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSC 249 (695)
Q Consensus 211 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~ 249 (695)
+.++|.|+.|+++.|.+...+...-.+..+|+.|-+.+.
T Consensus 93 le~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT 131 (418)
T KOG2982|consen 93 LEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGT 131 (418)
T ss_pred HhcCccceEeeccCCcCCCccccCcccccceEEEEEcCC
Confidence 344555555555555444332222233344444444443
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.90 E-value=1.3e-05 Score=53.30 Aligned_cols=17 Identities=41% Similarity=0.536 Sum_probs=6.5
Q ss_pred CCCCCCCCEEeCCCCCC
Q 036216 72 LQNLTSLKHLGLPFNHF 88 (695)
Q Consensus 72 ~~~l~~L~~L~L~~n~l 88 (695)
+++|++|++|++++|++
T Consensus 20 l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 20 LSNLPNLETLNLSNNPI 36 (44)
T ss_dssp GTTCTTSSEEEETSSCC
T ss_pred HhCCCCCCEEEecCCCC
Confidence 33333333333333333
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.88 E-value=2.3e-05 Score=69.39 Aligned_cols=125 Identities=26% Similarity=0.230 Sum_probs=76.9
Q ss_pred EEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCC
Q 036216 7 ELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFN 86 (695)
Q Consensus 7 ~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 86 (695)
.++|.+..+..+.. .=.-......+||++|.+.. + +.|..++.|.+|.|++|+|+.+.|.--..+++|+.|.+.+|
T Consensus 23 e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~~--l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 23 ELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLRK--L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred ccccccccccchhh-ccccccccceecccccchhh--c-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence 45555555444433 00112355677888887764 2 33557777888888888887666665566777888888887
Q ss_pred CCCCCc-hhhhcCCCCCCEEEcccCcCCccc---chhhcCCCCCCEEEccCCc
Q 036216 87 HFSSSV-PKWFDRLTHLEHLSLSYNSLEGRI---PRSMARLCNLRRLYLGGAK 135 (695)
Q Consensus 87 ~l~~~~-p~~~~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~L~~n~ 135 (695)
.+.... -..+..|++|++|.+-+|.++..- --.+.++++|++||+.+-.
T Consensus 99 si~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 99 SIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred chhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 765310 123566778888888777766321 1235677777777776543
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.86 E-value=7.9e-05 Score=75.22 Aligned_cols=77 Identities=10% Similarity=0.155 Sum_probs=49.7
Q ss_pred ccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCC
Q 036216 404 LGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFL 483 (695)
Q Consensus 404 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 483 (695)
+..+.+++.|++++|.++ .+|. -..+|++|.+++|.-...+|..+ .++|+.|.+++|.....+|. +|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~------sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPE------SV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccccccc------cc
Confidence 445688888999988777 4552 23468888888875556667543 35778888887733223443 46
Q ss_pred CEEeCCCCcC
Q 036216 484 QILDLADNNL 493 (695)
Q Consensus 484 ~~L~L~~n~l 493 (695)
+.|++.++..
T Consensus 115 e~L~L~~n~~ 124 (426)
T PRK15386 115 RSLEIKGSAT 124 (426)
T ss_pred ceEEeCCCCC
Confidence 6666665543
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.85 E-value=1.4e-05 Score=87.80 Aligned_cols=138 Identities=22% Similarity=0.226 Sum_probs=69.9
Q ss_pred CCCEEECCCCCCCCCCCchhhc-CCCCCCEEEcCCCcCccc-CCccCCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEE
Q 036216 28 TLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLGYNNFQGP-IPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHL 105 (695)
Q Consensus 28 ~L~~L~Ls~n~i~~~~~~~~~~-~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 105 (695)
+|++||+++.......-|..++ .+|+|++|.+++-.+... .-....++++|+.||+|+..++.. .+++++++|++|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence 5566666654432211222332 456666666665544321 122334566666666666666533 456666666666
Q ss_pred EcccCcCCc-ccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcccccccchhcCCCCCCCEEEc
Q 036216 106 SLSYNSLEG-RIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDL 184 (695)
Q Consensus 106 ~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L 184 (695)
.+.+=.+.. ..-..+.+|++|+.||+|........ .....+ -+.-..+|+|+.||.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~-~ii~qY----------------------lec~~~LpeLrfLDc 257 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDT-KIIEQY----------------------LECGMVLPELRFLDC 257 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccch-HHHHHH----------------------HHhcccCccccEEec
Confidence 665544442 12234555666666666654433221 111111 112234778888888
Q ss_pred cCCCcC
Q 036216 185 SNNSIV 190 (695)
Q Consensus 185 ~~n~i~ 190 (695)
|+..+.
T Consensus 258 SgTdi~ 263 (699)
T KOG3665|consen 258 SGTDIN 263 (699)
T ss_pred CCcchh
Confidence 877664
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.74 E-value=1.5e-05 Score=87.64 Aligned_cols=136 Identities=25% Similarity=0.289 Sum_probs=99.3
Q ss_pred CCCcEEEcCCCcCCC--CCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCE
Q 036216 3 PSLVELDLSNCQLHH--FPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKH 80 (695)
Q Consensus 3 ~~L~~L~ls~~~l~~--~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 80 (695)
.+|++||+++...-. -+...-.-++.|+.|.+++-.+....+.....++++|+.||+|+++++.. ..++++++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 368899998865332 22233456899999999998876532344455899999999999999855 78899999999
Q ss_pred EeCCCCCCCC-CchhhhcCCCCCCEEEcccCcCCcc------cchhhcCCCCCCEEEccCCcCcccc
Q 036216 81 LGLPFNHFSS-SVPKWFDRLTHLEHLSLSYNSLEGR------IPRSMARLCNLRRLYLGGAKLNQEI 140 (695)
Q Consensus 81 L~L~~n~l~~-~~p~~~~~l~~L~~L~Ls~n~l~~~------~~~~~~~l~~L~~L~L~~n~l~~~~ 140 (695)
|.+.+=.+.. ..-..+.+|++|++||+|....... .-+.-..+++||.||.+++.+....
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 9998877764 2224577899999999998764421 1123345889999999988776543
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.73 E-value=5.5e-05 Score=67.00 Aligned_cols=106 Identities=22% Similarity=0.188 Sum_probs=85.2
Q ss_pred CCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccC-CccCCCCCCCCEEe
Q 036216 4 SLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPI-PEGLQNLTSLKHLG 82 (695)
Q Consensus 4 ~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~ 82 (695)
....+||++|.+..++. |..++.|.+|.+.+|.|+.+ .|.--..+++|++|.|++|.|.... -+-+..+++|++|.
T Consensus 43 ~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I-~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRI-DPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhhccc--CCCccccceEEecCCcceee-ccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 45679999999998875 88999999999999999986 5655557889999999999987431 24467899999999
Q ss_pred CCCCCCCCCch---hhhcCCCCCCEEEcccCcC
Q 036216 83 LPFNHFSSSVP---KWFDRLTHLEHLSLSYNSL 112 (695)
Q Consensus 83 L~~n~l~~~~p---~~~~~l~~L~~L~Ls~n~l 112 (695)
+-+|.++..-- -.+..+++|++||...-..
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 99999874211 2467899999999987543
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.66 E-value=0.0001 Score=63.60 Aligned_cols=110 Identities=16% Similarity=0.198 Sum_probs=49.2
Q ss_pred CCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCCCCCchhhhc
Q 036216 18 FPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFD 97 (695)
Q Consensus 18 ~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 97 (695)
++..+|.++++|+.+.+.. .+..+ -...|.++++|+.+.+..+ +......+|.++++|+.+.+.. .+.......|.
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I-~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~ 78 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKI-GENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFS 78 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE--TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEe-Chhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccc
Confidence 4445566666666666653 34332 3334555656666666554 4444455566666666666654 33323344555
Q ss_pred CCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccC
Q 036216 98 RLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGG 133 (695)
Q Consensus 98 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 133 (695)
.+++|+.+++..+ +.......|.+. +|+.+.+..
T Consensus 79 ~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 79 NCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp T-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 5666666666554 443344455555 666666554
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.41 E-value=0.00039 Score=59.84 Aligned_cols=81 Identities=17% Similarity=0.265 Sum_probs=33.5
Q ss_pred hccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEE
Q 036216 358 ETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTL 437 (695)
Q Consensus 358 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 437 (695)
++.+|+.+.+.. .+......+|..+++|+.+.+.++ +.......|..+++++.+.+.+ .+.......|..+++|+.+
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i 86 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI 86 (129)
T ss_dssp T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred CCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccc
Confidence 445555555543 333334445555555666665553 4333444555555555555544 3332334445555555555
Q ss_pred EcCC
Q 036216 438 DVGE 441 (695)
Q Consensus 438 ~l~~ 441 (695)
++..
T Consensus 87 ~~~~ 90 (129)
T PF13306_consen 87 DIPS 90 (129)
T ss_dssp EETT
T ss_pred ccCc
Confidence 5544
No 63
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.37 E-value=1.6e-05 Score=78.05 Aligned_cols=36 Identities=22% Similarity=0.246 Sum_probs=16.5
Q ss_pred CCCCcEEECcCCcce-eeCCccccCCCCCcEEEcCCC
Q 036216 407 LSSLVSLHLRKNRLS-GTIPILLKNCTSLVTLDVGEN 442 (695)
Q Consensus 407 l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n 442 (695)
+..|+.+.++++... +..-..+..+++|+.+++-++
T Consensus 400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred ccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 345555555555532 222233444555555555444
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.25 E-value=0.00018 Score=66.72 Aligned_cols=107 Identities=21% Similarity=0.161 Sum_probs=71.9
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCC--cCcccCCccCCCCCCCCEEeCCCCCCCCCchhh---h
Q 036216 22 PVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYN--NFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKW---F 96 (695)
Q Consensus 22 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n--~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~---~ 96 (695)
....+..|+.|.+.+..++. + ..+-.+++|++|.++.| ++.+.++-....+++|++|++++|++.. +.. .
T Consensus 38 l~d~~~~le~ls~~n~gltt--~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl 112 (260)
T KOG2739|consen 38 LTDEFVELELLSVINVGLTT--L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPL 112 (260)
T ss_pred ccccccchhhhhhhccceee--c-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchh
Confidence 34455667777777777654 2 22447888999999998 6665555555667999999999998873 222 4
Q ss_pred cCCCCCCEEEcccCcCCccc---chhhcCCCCCCEEEccC
Q 036216 97 DRLTHLEHLSLSYNSLEGRI---PRSMARLCNLRRLYLGG 133 (695)
Q Consensus 97 ~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~L~~ 133 (695)
..+.+|..|++..|..+... -..|.-+++|++||-..
T Consensus 113 ~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 55677888898888766421 23466677888876443
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.07 E-value=0.00035 Score=64.92 Aligned_cols=87 Identities=23% Similarity=0.264 Sum_probs=57.3
Q ss_pred CCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCC--CCCCCchhhhcCCCCCCEEEcccCcCCcc-cchhhcCCCCC
Q 036216 50 GLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFN--HFSSSVPKWFDRLTHLEHLSLSYNSLEGR-IPRSMARLCNL 126 (695)
Q Consensus 50 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n--~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L 126 (695)
.+..|+.|.+.+..++.. ..|-.+++|++|.++.| ++.+-++.....+++|++|++++|+|+.. .-..+..+.+|
T Consensus 41 ~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred cccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 556677777777776633 45667788888888888 66555555556668888888888887721 11234455666
Q ss_pred CEEEccCCcCcc
Q 036216 127 RRLYLGGAKLNQ 138 (695)
Q Consensus 127 ~~L~L~~n~l~~ 138 (695)
..|++.+|.-++
T Consensus 119 ~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 119 KSLDLFNCSVTN 130 (260)
T ss_pred hhhhcccCCccc
Confidence 677777765543
No 66
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.94 E-value=7.5e-05 Score=73.53 Aligned_cols=281 Identities=16% Similarity=0.068 Sum_probs=138.9
Q ss_pred CCCEEECCCCCCCC-CCCchhhcCCCCCCEEEcCCCc-CcccCCccC-CCCCCCCEEeCCCCC-CCCCchh-hhcCCCCC
Q 036216 28 TLTTLDLSHNQFDN-SFVPAWVFGLSRLHFLNLGYNN-FQGPIPEGL-QNLTSLKHLGLPFNH-FSSSVPK-WFDRLTHL 102 (695)
Q Consensus 28 ~L~~L~Ls~n~i~~-~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~p~-~~~~l~~L 102 (695)
.|+.|.+.++.-.. ..+..+...+++++.|++.+|. ++...-..+ ..+++|++|++..|. ++...-. --..+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 46666666664221 1122333467777777776665 221111111 356777777777643 3322112 22456777
Q ss_pred CEEEcccCc-CCcccc-hhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcccc-ccc-chhcCCCCC
Q 036216 103 EHLSLSYNS-LEGRIP-RSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSIS-GHL-TDQLGQFKN 178 (695)
Q Consensus 103 ~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~-~~~-~~~l~~l~~ 178 (695)
.+|+++.|. |++.-. .-+.++..++.+.+.|+. +.....+...-+.... +.++++..|... ... ...-..+..
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~--e~~le~l~~~~~~~~~-i~~lnl~~c~~lTD~~~~~i~~~c~~ 295 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCL--ELELEALLKAAAYCLE-ILKLNLQHCNQLTDEDLWLIACGCHA 295 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccc--cccHHHHHHHhccChH-hhccchhhhccccchHHHHHhhhhhH
Confidence 777777764 333111 123344455555555431 1111211111111122 555555555322 111 111234567
Q ss_pred CCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEccccc-ceeecCCCC-CCCCCccEEEccCCCCCC--C
Q 036216 179 LDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANK-LTLKVKRDW-IPPFQLIELGLRSCDVGS--R 254 (695)
Q Consensus 179 L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~~~~L~~L~l~~~~~~~--~ 254 (695)
|+.|+.+++.-.+. ..-..--.+..+|+.+-+.+++ ++......+ .+.+.|+.+++..|.... .
T Consensus 296 lq~l~~s~~t~~~d------------~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~t 363 (483)
T KOG4341|consen 296 LQVLCYSSCTDITD------------EVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGT 363 (483)
T ss_pred hhhhcccCCCCCch------------HHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhh
Confidence 77777776543211 1111123456777777777765 222222222 245677777777775432 2
Q ss_pred CCccccCCCCCCEEEcccCCCccccCh----HHhhcccccceeeccccccccc--ccCccccCccceEecccccc
Q 036216 255 FPLWLYSQKDLQFLDLFNSGISGTFPN----RLLKSASQLYLLDLGHNQIHGE--LTNLTKASQLSYLSLIANNF 323 (695)
Q Consensus 255 ~~~~l~~~~~L~~L~l~~~~i~~~~~~----~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~~L~~L~l~~n~~ 323 (695)
+...-.+++.|+.+.++++.....-.. ........++.+.++++..... ...+..++.|+.+++.+++-
T Consensus 364 L~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 364 LASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred HhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 223335677888888887753211111 1113356788888888876532 23455667888888877754
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.56 E-value=0.00013 Score=67.91 Aligned_cols=86 Identities=27% Similarity=0.263 Sum_probs=57.9
Q ss_pred CCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEEcccCcCCccc-chhhcCCCCCCEE
Q 036216 51 LSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRI-PRSMARLCNLRRL 129 (695)
Q Consensus 51 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L 129 (695)
+.+.+.|++-+|.+..+ .....++.|++|.|+-|+|++.-| +..|++|+.|+|..|.|.... -..+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 45566777777776643 345567777777777777775533 777778888888877776422 2345677788888
Q ss_pred EccCCcCcccc
Q 036216 130 YLGGAKLNQEI 140 (695)
Q Consensus 130 ~L~~n~l~~~~ 140 (695)
-|..|...+..
T Consensus 94 WL~ENPCc~~a 104 (388)
T KOG2123|consen 94 WLDENPCCGEA 104 (388)
T ss_pred hhccCCccccc
Confidence 87777765543
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.55 E-value=9e-05 Score=68.88 Aligned_cols=63 Identities=24% Similarity=0.246 Sum_probs=25.8
Q ss_pred CCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCccc
Q 036216 406 SLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFD 470 (695)
Q Consensus 406 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 470 (695)
.++.|+.|.|+-|+|+...| +..|+.|++|+|..|.|...---....++|+|+.|+|..|.-.
T Consensus 39 kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc 101 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCC 101 (388)
T ss_pred hcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcc
Confidence 34444444444444442222 3444444444444444421111111224455555555544433
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.71 E-value=0.0044 Score=34.03 Aligned_cols=11 Identities=45% Similarity=0.416 Sum_probs=4.5
Q ss_pred CEEeccCCccc
Q 036216 580 QSLNLSYNIFT 590 (695)
Q Consensus 580 ~~L~Ls~n~l~ 590 (695)
++|||++|+++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 34444444443
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.63 E-value=0.0051 Score=33.79 Aligned_cols=21 Identities=48% Similarity=0.683 Sum_probs=13.7
Q ss_pred CCCEEECCCCcccccCCcCCcC
Q 036216 602 SLESIDFSVNKFTGEIPQSMSS 623 (695)
Q Consensus 602 ~L~~L~Ls~n~l~~~~p~~l~~ 623 (695)
+|+.||+++|+++ .+|.+|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 3667777777777 56665554
No 71
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.35 E-value=0.00031 Score=73.94 Aligned_cols=191 Identities=26% Similarity=0.266 Sum_probs=93.7
Q ss_pred CCEEECCCCCCCCCCC---chhhcCCCCCCEEEcCCCcCcccC----CccCCCC-CCCCEEeCCCCCCCCC----chhhh
Q 036216 29 LTTLDLSHNQFDNSFV---PAWVFGLSRLHFLNLGYNNFQGPI----PEGLQNL-TSLKHLGLPFNHFSSS----VPKWF 96 (695)
Q Consensus 29 L~~L~Ls~n~i~~~~~---~~~~~~l~~L~~L~Ls~n~i~~~~----~~~~~~l-~~L~~L~L~~n~l~~~----~p~~~ 96 (695)
+..|.|.+|.+..... -.++.....|..|++++|.+.... -..+... ..|++|++..|.++.. ++..+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 5555555555544211 112234555566666666555221 1122222 4455566666655532 33444
Q ss_pred cCCCCCCEEEcccCcCCc----ccchh----hcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcccccc
Q 036216 97 DRLTHLEHLSLSYNSLEG----RIPRS----MARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGH 168 (695)
Q Consensus 97 ~~l~~L~~L~Ls~n~l~~----~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~ 168 (695)
.....++.++++.|.+.. .++.. +....++++|.+.++.++...-......+......++.+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 455566666666665531 11222 2235566666666666554333333333333333355566666665533
Q ss_pred c----chhcCCC-CCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEccccccee
Q 036216 169 L----TDQLGQF-KNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTL 229 (695)
Q Consensus 169 ~----~~~l~~l-~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~ 229 (695)
. ...+..+ ..+++++++.|.|+....- .+.. .+..++.++.+.+..|.+..
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~---------~L~~-~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVR---------DLAE-VLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchH---------HHHH-HHhhhHHHHHhhcccCcccc
Confidence 1 2233344 5567777777776533211 1222 45556677777777776654
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.13 E-value=0.0052 Score=66.62 Aligned_cols=14 Identities=36% Similarity=0.434 Sum_probs=7.6
Q ss_pred CCCCCCEEEccCCC
Q 036216 175 QFKNLDSLDLSNNS 188 (695)
Q Consensus 175 ~l~~L~~L~L~~n~ 188 (695)
.++.|++|+++++.
T Consensus 293 ~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 293 RCPSLRELDLSGCH 306 (482)
T ss_pred hcCcccEEeeecCc
Confidence 34555555555554
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.07 E-value=0.0018 Score=70.22 Aligned_cols=111 Identities=23% Similarity=0.085 Sum_probs=48.1
Q ss_pred ccccceeecccccccCC--CCccccCCCCCCEEeCCCC-cccccC----CccccCCCCCcEEECcCCc-ceeeCCcccc-
Q 036216 359 TMKLKFLFLDRNILQGK--LPDCWMSYQNLMALDLSNN-KFTGNL----PTSLGSLSSLVSLHLRKNR-LSGTIPILLK- 429 (695)
Q Consensus 359 ~~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~ls~n-~~~~~~----~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~- 429 (695)
++.|+.+.+..+.-... .-.....++.|++|+++++ ...... ......+++|+.|+++.+. +++..-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 44555555554432211 1122334556666666542 111001 1122334555666665555 3322212222
Q ss_pred CCCCCcEEEcCCCc-ccccCChhhhhcCCCCcEEEcCCCcc
Q 036216 430 NCTSLVTLDVGENE-VFGNIPSWFGERFSRMVLLILRSNNF 469 (695)
Q Consensus 430 ~l~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~L~l~~n~~ 469 (695)
.|++|+.|.+.+|. ++...-..+...+++|+.|++++|..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 25556666555554 33333333444555555555555543
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.04 E-value=0.00034 Score=63.41 Aligned_cols=84 Identities=18% Similarity=0.198 Sum_probs=43.8
Q ss_pred CCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEE
Q 036216 50 GLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRL 129 (695)
Q Consensus 50 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 129 (695)
.....+.||++.|++- -+-..|+-++.|..|+++.|.+. ..|..++.+..++++++..|..+ ..|.++++.++++++
T Consensus 40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence 3444444555444443 22334444455555555555555 45555555555555555555554 455556666666666
Q ss_pred EccCCcC
Q 036216 130 YLGGAKL 136 (695)
Q Consensus 130 ~L~~n~l 136 (695)
++.++.+
T Consensus 117 e~k~~~~ 123 (326)
T KOG0473|consen 117 EQKKTEF 123 (326)
T ss_pred hhccCcc
Confidence 6555553
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.11 E-value=0.0012 Score=69.52 Aligned_cols=190 Identities=23% Similarity=0.206 Sum_probs=125.0
Q ss_pred CCEEEcCCCcCccc----CCccCCCCCCCCEEeCCCCCCCCCchh----hhcCC-CCCCEEEcccCcCCc----ccchhh
Q 036216 54 LHFLNLGYNNFQGP----IPEGLQNLTSLKHLGLPFNHFSSSVPK----WFDRL-THLEHLSLSYNSLEG----RIPRSM 120 (695)
Q Consensus 54 L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~~p~----~~~~l-~~L~~L~Ls~n~l~~----~~~~~~ 120 (695)
+..|.|.+|.+... +..++.....|..|++++|.+...... .+... ..|++|++..|.++. .+.+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 78888999988753 335667788999999999988743222 22222 457778888888774 345667
Q ss_pred cCCCCCCEEEccCCcCccccchhhhhhhcc---cccccceEEccCccccccc----chhcCCCCC-CCEEEccCCCcCCC
Q 036216 121 ARLCNLRRLYLGGAKLNQEISEILEIFSGC---VSNGLESLALASSSISGHL----TDQLGQFKN-LDSLDLSNNSIVGP 192 (695)
Q Consensus 121 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~---~~~~L~~L~L~~n~~~~~~----~~~l~~l~~-L~~L~L~~n~i~~~ 192 (695)
.....++.++++.|.+...........+.. ...++++|.+++|.++... ...+...+. +..|++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 778889999999998854333333333333 3445889999998876332 334555665 67788888887422
Q ss_pred ceEEeeccccccccChhhhhCC-CCCCEEEcccccceeecCC----CCCCCCCccEEEccCCCCCC
Q 036216 193 RVLQLYLNKLHGTLSEIHFANL-TKLSVFLVGANKLTLKVKR----DWIPPFQLIELGLRSCDVGS 253 (695)
Q Consensus 193 ~~~~l~~~~~~~~l~~~~~~~l-~~L~~L~l~~n~l~~~~~~----~~~~~~~L~~L~l~~~~~~~ 253 (695)
. ...+.+ .+..+ ..++.+++..|.+...... .+..+.+++++.+..+.+..
T Consensus 249 g---------~~~L~~-~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 249 G---------VEKLLP-CLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred H---------HHHHHH-HhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 0 001111 34455 6778899999988765443 44566788999998887654
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.60 E-value=0.0017 Score=59.04 Aligned_cols=96 Identities=24% Similarity=0.251 Sum_probs=83.1
Q ss_pred cCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCCCCCch
Q 036216 14 QLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVP 93 (695)
Q Consensus 14 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~p 93 (695)
.+..+|-..+..+...+.||++.|++.. +..-|+-++.|..|+++.|++. ..|..+..+..++++++..|..+ ..|
T Consensus 29 ~~s~~~v~ei~~~kr~tvld~~s~r~vn--~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p 104 (326)
T KOG0473|consen 29 ELSEIPVREIASFKRVTVLDLSSNRLVN--LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQP 104 (326)
T ss_pred HhcccchhhhhccceeeeehhhhhHHHh--hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCC
Confidence 4566776778888999999999999876 5566777888999999999998 78899999999999999999887 789
Q ss_pred hhhcCCCCCCEEEcccCcCC
Q 036216 94 KWFDRLTHLEHLSLSYNSLE 113 (695)
Q Consensus 94 ~~~~~l~~L~~L~Ls~n~l~ 113 (695)
.+++..++++++++..+.+.
T Consensus 105 ~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 105 KSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred ccccccCCcchhhhccCcch
Confidence 99999999999999998755
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.51 E-value=0.046 Score=27.72 Aligned_cols=15 Identities=47% Similarity=0.594 Sum_probs=6.1
Q ss_pred CCcEEEcCCCcCCCC
Q 036216 4 SLVELDLSNCQLHHF 18 (695)
Q Consensus 4 ~L~~L~ls~~~l~~~ 18 (695)
+|+.|++++|+++.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 455555555555443
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.16 E-value=0.055 Score=27.44 Aligned_cols=13 Identities=38% Similarity=0.549 Sum_probs=4.4
Q ss_pred CCCEEeccCCccc
Q 036216 578 AVQSLNLSYNIFT 590 (695)
Q Consensus 578 ~L~~L~Ls~n~l~ 590 (695)
+|++|+|++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3444444444433
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.83 E-value=0.087 Score=30.26 Aligned_cols=23 Identities=52% Similarity=0.674 Sum_probs=13.6
Q ss_pred CCCCcEEEcCCCcCCCCCccCCC
Q 036216 2 LPSLVELDLSNCQLHHFPQLPVA 24 (695)
Q Consensus 2 l~~L~~L~ls~~~l~~~~~~~~~ 24 (695)
+++|++|+|++|.++.+|..+|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 35566666666666666655543
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.83 E-value=0.087 Score=30.26 Aligned_cols=23 Identities=52% Similarity=0.674 Sum_probs=13.6
Q ss_pred CCCCcEEEcCCCcCCCCCccCCC
Q 036216 2 LPSLVELDLSNCQLHHFPQLPVA 24 (695)
Q Consensus 2 l~~L~~L~ls~~~l~~~~~~~~~ 24 (695)
+++|++|+|++|.++.+|..+|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 35566666666666666655543
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.82 E-value=0.36 Score=27.62 Aligned_cols=14 Identities=36% Similarity=0.541 Sum_probs=6.8
Q ss_pred CCCCEEeCCCCCCC
Q 036216 76 TSLKHLGLPFNHFS 89 (695)
Q Consensus 76 ~~L~~L~L~~n~l~ 89 (695)
++|++|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34445555555444
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.82 E-value=0.36 Score=27.62 Aligned_cols=14 Identities=36% Similarity=0.541 Sum_probs=6.8
Q ss_pred CCCCEEeCCCCCCC
Q 036216 76 TSLKHLGLPFNHFS 89 (695)
Q Consensus 76 ~~L~~L~L~~n~l~ 89 (695)
++|++|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34445555555444
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=85.98 E-value=0.18 Score=28.26 Aligned_cols=13 Identities=38% Similarity=0.542 Sum_probs=5.3
Q ss_pred CCCEEeccCCccc
Q 036216 578 AVQSLNLSYNIFT 590 (695)
Q Consensus 578 ~L~~L~Ls~n~l~ 590 (695)
+|++|+|++|+++
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 4444555554444
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.76 E-value=0.11 Score=46.82 Aligned_cols=35 Identities=26% Similarity=0.256 Sum_probs=19.5
Q ss_pred CCCEEeCCCCcccccCCccccCCCCCcEEECcCCc
Q 036216 385 NLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNR 419 (695)
Q Consensus 385 ~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~ 419 (695)
.++.+|-+++.|..+.-+.+.+++.++.|.+.+|+
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence 45556666666655444455555555555555554
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.62 E-value=0.18 Score=45.45 Aligned_cols=84 Identities=21% Similarity=0.190 Sum_probs=43.9
Q ss_pred CCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCc-ccccccchhcCCCCC
Q 036216 100 THLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASS-SISGHLTDQLGQFKN 178 (695)
Q Consensus 100 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n-~~~~~~~~~l~~l~~ 178 (695)
..++.+|-+++.|..+--+.+.+++.++.|.+.++.-- ..+--..++....+|+.|++++| +|+...-..+..+++
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~---dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lkn 177 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYF---DDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKN 177 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccch---hhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhh
Confidence 34555666666555444444555555555555544221 11111123334444666666655 355555566677777
Q ss_pred CCEEEccC
Q 036216 179 LDSLDLSN 186 (695)
Q Consensus 179 L~~L~L~~ 186 (695)
|+.|.+.+
T Consensus 178 Lr~L~l~~ 185 (221)
T KOG3864|consen 178 LRRLHLYD 185 (221)
T ss_pred hHHHHhcC
Confidence 77776654
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=77.63 E-value=1.5 Score=24.98 Aligned_cols=17 Identities=41% Similarity=0.690 Sum_probs=9.5
Q ss_pred CCCEEeccCCcccccCCc
Q 036216 578 AVQSLNLSYNIFTGRIPE 595 (695)
Q Consensus 578 ~L~~L~Ls~n~l~~~~p~ 595 (695)
+|+.|++++|+++ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4555666666655 4444
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=74.73 E-value=2.6 Score=24.14 Aligned_cols=14 Identities=43% Similarity=0.684 Sum_probs=6.8
Q ss_pred CCCCEEECCCCCCC
Q 036216 27 STLTTLDLSHNQFD 40 (695)
Q Consensus 27 ~~L~~L~Ls~n~i~ 40 (695)
.+|+.|+++.|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34455555555543
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=71.02 E-value=42 Score=35.00 Aligned_cols=59 Identities=31% Similarity=0.258 Sum_probs=29.5
Q ss_pred cceeecccccccCCCCc---cccCCCCCCEEeCCCCcccc----cCCccccCCCCCcEEECcCCcc
Q 036216 362 LKFLFLDRNILQGKLPD---CWMSYQNLMALDLSNNKFTG----NLPTSLGSLSSLVSLHLRKNRL 420 (695)
Q Consensus 362 L~~L~l~~n~l~~~~~~---~~~~~~~L~~L~ls~n~~~~----~~~~~~~~l~~L~~L~l~~n~l 420 (695)
+..+.++.|......-. ....-+.+..|++++|.... .+|.......+++....+.|..
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p 480 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLP 480 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCc
Confidence 44555555554422211 12234566777777766542 2344444445555555555544
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=59.82 E-value=6.2 Score=23.02 Aligned_cols=20 Identities=35% Similarity=0.326 Sum_probs=12.1
Q ss_pred CCcEEEccCCcCCCccchhh
Q 036216 333 NLTVLELSGNSLSGPIFHFL 352 (695)
Q Consensus 333 ~L~~L~l~~n~l~~~~~~~~ 352 (695)
+|++|+|++|.+.......+
T Consensus 3 ~L~~LdL~~N~i~~~G~~~L 22 (28)
T smart00368 3 SLRELDLSNNKLGDEGARAL 22 (28)
T ss_pred ccCEEECCCCCCCHHHHHHH
Confidence 56777777777764443333
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=55.71 E-value=7.4 Score=41.07 Aligned_cols=63 Identities=30% Similarity=0.244 Sum_probs=31.1
Q ss_pred CCCCCCEEEcCCCcCcccC--CccCCCCCCCCEEeCCCC--CCCCCchhhhcCC--CCCCEEEcccCcCCc
Q 036216 50 GLSRLHFLNLGYNNFQGPI--PEGLQNLTSLKHLGLPFN--HFSSSVPKWFDRL--THLEHLSLSYNSLEG 114 (695)
Q Consensus 50 ~l~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~L~~n--~l~~~~p~~~~~l--~~L~~L~Ls~n~l~~ 114 (695)
+.+.+..++|++|++.... ...-...++|+.|+|++| .+.. ...+.++ ..|+.|-+.+|.+..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCcccc
Confidence 3445555666666655321 111123466677777766 3321 1223322 346677777776653
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=55.65 E-value=5.7 Score=41.86 Aligned_cols=68 Identities=22% Similarity=0.186 Sum_probs=43.8
Q ss_pred CCCCCCCEEECCCCCCCCCCCchhh-cCCCCCCEEEcCCCcCcccCCccCCC--CCCCCEEeCCCCCCCCC
Q 036216 24 ANFSTLTTLDLSHNQFDNSFVPAWV-FGLSRLHFLNLGYNNFQGPIPEGLQN--LTSLKHLGLPFNHFSSS 91 (695)
Q Consensus 24 ~~l~~L~~L~Ls~n~i~~~~~~~~~-~~l~~L~~L~Ls~n~i~~~~~~~~~~--l~~L~~L~L~~n~l~~~ 91 (695)
.+.+.+..+.|++|++....--.++ ...++|++|+|++|.........+.+ ...|++|-+.+|.+...
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccc
Confidence 4667788888888887653111222 36788999999999322112223333 35688999999988754
No 92
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=54.79 E-value=72 Score=33.35 Aligned_cols=60 Identities=22% Similarity=0.213 Sum_probs=36.8
Q ss_pred CCCEEeCCCCccccc---CCccccCCCCCcEEECcCCccee----eCCccccCCCCCcEEEcCCCcc
Q 036216 385 NLMALDLSNNKFTGN---LPTSLGSLSSLVSLHLRKNRLSG----TIPILLKNCTSLVTLDVGENEV 444 (695)
Q Consensus 385 ~L~~L~ls~n~~~~~---~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~~ 444 (695)
-+..+.++.|..... .......-+.+..|++++|.... .+|.....-..++....+.|..
T Consensus 414 ~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p 480 (553)
T KOG4242|consen 414 VLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLP 480 (553)
T ss_pred cccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCc
Confidence 467788888877621 12234456788999999998653 2344444445566666665543
No 93
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=33.92 E-value=30 Score=19.56 Aligned_cols=13 Identities=31% Similarity=0.286 Sum_probs=10.9
Q ss_pred CCCCCEEeCCCCc
Q 036216 480 LAFLQILDLADNN 492 (695)
Q Consensus 480 l~~L~~L~L~~n~ 492 (695)
+++|+.|++++|.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 4788999999986
No 94
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=27.30 E-value=33 Score=44.12 Aligned_cols=33 Identities=24% Similarity=0.258 Sum_probs=26.3
Q ss_pred eccCCcccccCCccccCcCCCCEEECCCCcccc
Q 036216 583 NLSYNIFTGRIPETIGTMRSLESIDFSVNKFTG 615 (695)
Q Consensus 583 ~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~ 615 (695)
||++|+|+...+..|..+++|+.|+|++|.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 578888886666678888888888888887763
No 95
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=24.11 E-value=45 Score=43.04 Aligned_cols=32 Identities=34% Similarity=0.527 Sum_probs=28.6
Q ss_pred EcCCCcCCCCCccCCCCCCCCCEEECCCCCCC
Q 036216 9 DLSNCQLHHFPQLPVANFSTLTTLDLSHNQFD 40 (695)
Q Consensus 9 ~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~ 40 (695)
||++|+|+.++...|..+.+|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68899999999999999999999999998763
Done!