Query 036216
Match_columns 695
No_of_seqs 563 out of 3949
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 18:06:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036216.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036216hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.1E-76 3.9E-81 674.2 51.8 648 4-683 78-762 (768)
2 3rgz_A Protein brassinosteroid 100.0 9E-69 3.1E-73 609.3 43.0 631 3-664 50-720 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 8.4E-60 2.9E-64 531.7 50.2 584 3-643 25-627 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 1.4E-58 4.7E-63 521.8 47.3 577 5-658 6-619 (680)
5 3t6q_A CD180 antigen; protein- 100.0 4.8E-55 1.6E-59 486.3 46.3 534 5-643 14-565 (606)
6 3vq2_A TLR4, TOLL-like recepto 100.0 3.8E-54 1.3E-58 479.1 42.2 533 5-644 13-564 (606)
7 3t6q_A CD180 antigen; protein- 100.0 5.2E-54 1.8E-58 478.0 42.6 516 3-618 33-564 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 1.9E-53 6.5E-58 473.4 40.2 523 3-618 32-562 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 1.9E-51 6.6E-56 471.8 40.1 551 6-671 7-590 (844)
10 3j0a_A TOLL-like receptor 5; m 100.0 7.3E-50 2.5E-54 458.8 36.5 523 30-663 7-563 (844)
11 2z63_A TOLL-like receptor 4, v 100.0 3.3E-49 1.1E-53 436.4 37.9 500 4-647 29-540 (570)
12 2z81_A CD282 antigen, TOLL-lik 100.0 9E-48 3.1E-52 422.6 35.2 507 2-647 4-519 (549)
13 2z63_A TOLL-like receptor 4, v 100.0 5.1E-47 1.8E-51 418.9 39.8 510 5-659 9-529 (570)
14 4g8a_A TOLL-like receptor 4; l 100.0 3.9E-46 1.3E-50 417.9 43.3 534 7-641 35-583 (635)
15 2z7x_B TOLL-like receptor 1, v 100.0 6.4E-46 2.2E-50 404.7 30.2 459 30-643 3-486 (520)
16 2z81_A CD282 antigen, TOLL-lik 100.0 1.5E-45 5.2E-50 404.9 33.2 487 27-659 5-508 (549)
17 4eco_A Uncharacterized protein 100.0 1E-45 3.6E-50 410.1 22.6 351 206-640 198-602 (636)
18 4g8a_A TOLL-like receptor 4; l 100.0 3.4E-43 1.2E-47 394.0 41.8 524 30-658 34-577 (635)
19 2z7x_B TOLL-like receptor 1, v 100.0 3.6E-45 1.2E-49 398.8 24.7 454 6-498 3-485 (520)
20 4eco_A Uncharacterized protein 100.0 3.3E-45 1.1E-49 406.1 21.2 437 27-618 81-604 (636)
21 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 7.6E-43 2.6E-47 383.4 29.2 461 28-644 32-516 (562)
22 4ecn_A Leucine-rich repeat pro 100.0 2.5E-43 8.5E-48 396.4 25.4 75 110-190 435-529 (876)
23 4ecn_A Leucine-rich repeat pro 100.0 2.5E-43 8.5E-48 396.4 24.8 397 86-638 435-864 (876)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.1E-42 1E-46 378.6 29.8 469 3-618 31-514 (562)
25 3v47_A TOLL-like receptor 5B a 100.0 2.1E-38 7.2E-43 339.5 33.9 384 7-499 14-413 (455)
26 1jl5_A Outer protein YOPM; leu 100.0 2E-39 6.8E-44 343.7 20.9 261 51-397 10-270 (454)
27 3v47_A TOLL-like receptor 5B a 100.0 3.8E-38 1.3E-42 337.5 29.2 381 155-649 32-419 (455)
28 1jl5_A Outer protein YOPM; leu 100.0 4.4E-38 1.5E-42 333.4 25.2 350 25-495 9-371 (454)
29 3bz5_A Internalin-J, INLJ; leu 100.0 1.1E-35 3.6E-40 315.4 29.7 364 2-462 41-404 (457)
30 3bz5_A Internalin-J, INLJ; leu 100.0 5E-35 1.7E-39 310.2 26.5 365 16-502 31-395 (457)
31 1o6v_A Internalin A; bacterial 100.0 4.6E-34 1.6E-38 305.8 33.7 343 4-446 47-389 (466)
32 2id5_A Lingo-1, leucine rich r 100.0 7.1E-34 2.4E-38 305.9 32.2 321 6-446 14-334 (477)
33 1o6v_A Internalin A; bacterial 100.0 9.2E-34 3.1E-38 303.4 32.4 326 211-639 64-389 (466)
34 1ogq_A PGIP-2, polygalacturona 100.0 5.6E-35 1.9E-39 294.9 21.4 259 360-670 50-313 (313)
35 2id5_A Lingo-1, leucine rich r 100.0 4.1E-34 1.4E-38 307.8 22.5 317 242-639 14-334 (477)
36 3o6n_A APL1; leucine-rich repe 100.0 7.6E-33 2.6E-37 289.5 23.5 309 2-345 44-352 (390)
37 3o6n_A APL1; leucine-rich repe 100.0 5.6E-32 1.9E-36 283.0 28.0 333 175-662 43-376 (390)
38 1ogq_A PGIP-2, polygalacturona 100.0 1.4E-32 4.7E-37 277.4 18.6 253 332-640 50-307 (313)
39 3oja_B Anopheles plasmodium-re 100.0 1.2E-31 3.9E-36 295.9 26.5 329 262-663 50-383 (597)
40 3oja_B Anopheles plasmodium-re 100.0 5.1E-32 1.7E-36 298.7 23.2 308 3-345 51-358 (597)
41 4fmz_A Internalin; leucine ric 100.0 2.7E-31 9.2E-36 273.4 25.9 305 237-638 42-346 (347)
42 4fmz_A Internalin; leucine ric 100.0 3.1E-30 1E-34 265.5 30.9 300 3-373 44-346 (347)
43 1z7x_W Ribonuclease inhibitor; 100.0 9.4E-34 3.2E-38 304.0 1.0 373 2-421 2-411 (461)
44 1z7x_W Ribonuclease inhibitor; 100.0 1.2E-33 4E-38 303.3 -3.9 380 177-639 3-441 (461)
45 2ft3_A Biglycan; proteoglycan, 100.0 1.4E-29 4.8E-34 258.4 23.7 222 358-636 100-331 (332)
46 1xku_A Decorin; proteoglycan, 100.0 1E-28 3.4E-33 252.0 29.0 267 4-301 32-306 (330)
47 1xku_A Decorin; proteoglycan, 100.0 8.4E-29 2.9E-33 252.5 27.9 267 312-638 32-306 (330)
48 2ft3_A Biglycan; proteoglycan, 100.0 5.2E-29 1.8E-33 254.2 22.9 285 4-342 34-330 (332)
49 2z80_A TOLL-like receptor 2, v 100.0 3.6E-28 1.2E-32 250.3 18.6 277 3-303 31-316 (353)
50 3ogk_B Coronatine-insensitive 100.0 1.8E-29 6.1E-34 279.8 9.3 258 45-319 66-350 (592)
51 4fcg_A Uncharacterized protein 100.0 4.2E-28 1.4E-32 246.0 17.7 227 359-638 80-314 (328)
52 2z66_A Variable lymphocyte rec 100.0 1.7E-27 5.9E-32 240.1 21.8 234 360-642 28-265 (306)
53 2z80_A TOLL-like receptor 2, v 100.0 2.6E-28 8.8E-33 251.3 14.6 275 316-644 36-320 (353)
54 2z66_A Variable lymphocyte rec 99.9 6.3E-27 2.1E-31 236.0 21.1 249 6-278 10-263 (306)
55 1ozn_A Reticulon 4 receptor; N 99.9 4.4E-27 1.5E-31 234.4 18.5 227 364-642 15-242 (285)
56 3ogk_B Coronatine-insensitive 99.9 3.2E-29 1.1E-33 277.7 3.0 412 18-445 64-526 (592)
57 3zyi_A Leucine-rich repeat-con 99.9 2.4E-26 8.1E-31 244.9 23.7 227 361-638 76-303 (452)
58 3zyj_A Leucine-rich repeat-con 99.9 2.3E-26 7.9E-31 244.1 23.4 227 361-638 65-292 (440)
59 4fcg_A Uncharacterized protein 99.9 4.2E-27 1.4E-31 238.6 16.9 220 383-656 80-309 (328)
60 3zyi_A Leucine-rich repeat-con 99.9 3.5E-26 1.2E-30 243.6 24.4 248 313-614 56-303 (452)
61 3zyj_A Leucine-rich repeat-con 99.9 4.1E-26 1.4E-30 242.1 24.0 248 313-614 45-292 (440)
62 1ozn_A Reticulon 4 receptor; N 99.9 9.4E-27 3.2E-31 232.0 17.4 266 335-657 14-283 (285)
63 3o53_A Protein LRIM1, AGAP0063 99.9 2.8E-27 9.7E-32 239.3 12.0 256 334-656 12-270 (317)
64 1wwl_A Monocyte differentiatio 99.9 1.5E-27 5.1E-32 240.7 7.0 203 382-639 93-310 (312)
65 1wwl_A Monocyte differentiatio 99.9 9.3E-27 3.2E-31 234.9 7.5 247 358-662 41-310 (312)
66 3oja_A Leucine-rich immune mol 99.9 1.5E-25 5.1E-30 239.8 17.2 224 357-643 31-256 (487)
67 3g06_A SSPH2 (leucine-rich rep 99.9 2.5E-24 8.7E-29 234.5 25.8 263 289-644 41-303 (622)
68 2z62_A TOLL-like receptor 4, v 99.9 1.4E-24 4.8E-29 215.1 21.5 214 384-647 28-246 (276)
69 3o53_A Protein LRIM1, AGAP0063 99.9 3.2E-26 1.1E-30 231.5 9.7 260 5-298 12-272 (317)
70 2p1m_B Transport inhibitor res 99.9 1.2E-27 4.2E-32 265.2 -2.5 422 21-494 60-519 (594)
71 3g06_A SSPH2 (leucine-rich rep 99.9 2.5E-24 8.7E-29 234.5 23.0 268 240-625 41-308 (622)
72 2p1m_B Transport inhibitor res 99.9 5E-27 1.7E-31 260.3 1.5 86 554-639 457-545 (594)
73 3rfs_A Internalin B, repeat mo 99.9 1.5E-24 5E-29 214.1 14.9 224 359-644 18-241 (272)
74 2o6q_A Variable lymphocyte rec 99.9 1.9E-23 6.5E-28 206.0 22.1 207 385-643 17-223 (270)
75 3oja_A Leucine-rich immune mol 99.9 4.1E-25 1.4E-29 236.3 10.6 236 331-633 33-270 (487)
76 2z62_A TOLL-like receptor 4, v 99.9 1.6E-23 5.5E-28 207.5 20.0 224 7-254 11-239 (276)
77 2o6q_A Variable lymphocyte rec 99.9 8.9E-23 3E-27 201.2 23.3 202 4-228 17-218 (270)
78 1p9a_G Platelet glycoprotein I 99.9 6.1E-23 2.1E-27 203.9 20.9 204 380-639 6-209 (290)
79 3rfs_A Internalin B, repeat mo 99.9 3.5E-23 1.2E-27 204.2 18.3 209 24-263 38-246 (272)
80 2ca6_A RAN GTPase-activating p 99.9 3.8E-25 1.3E-29 230.6 2.2 252 343-642 15-320 (386)
81 1p9a_G Platelet glycoprotein I 99.9 3.1E-22 1.1E-26 198.8 20.0 202 358-615 8-209 (290)
82 3m19_A Variable lymphocyte rec 99.9 1.5E-22 5.2E-27 197.1 17.2 212 385-672 15-232 (251)
83 3goz_A Leucine-rich repeat-con 99.9 5.3E-24 1.8E-28 219.5 5.1 235 362-640 24-299 (362)
84 4glp_A Monocyte differentiatio 99.9 7.2E-23 2.4E-27 206.3 13.2 230 334-639 66-308 (310)
85 2ast_B S-phase kinase-associat 99.9 3.3E-23 1.1E-27 211.9 9.0 251 333-644 48-312 (336)
86 3goz_A Leucine-rich repeat-con 99.9 3.4E-23 1.1E-27 213.5 9.0 213 7-229 2-239 (362)
87 2xwt_C Thyrotropin receptor; s 99.9 3.7E-22 1.3E-26 193.0 15.2 196 385-635 32-236 (239)
88 2ca6_A RAN GTPase-activating p 99.9 4.6E-23 1.6E-27 214.9 8.2 251 44-304 24-319 (386)
89 3m19_A Variable lymphocyte rec 99.9 8.2E-21 2.8E-25 184.9 20.8 178 4-190 15-192 (251)
90 1h6u_A Internalin H; cell adhe 99.9 1.2E-21 4.1E-26 196.7 14.7 209 364-639 23-231 (308)
91 1h6u_A Internalin H; cell adhe 99.9 1.5E-20 5E-25 188.8 20.7 167 3-189 41-207 (308)
92 2ast_B S-phase kinase-associat 99.9 1.6E-21 5.5E-26 199.3 13.4 251 28-306 48-311 (336)
93 2xwt_C Thyrotropin receptor; s 99.9 3.4E-21 1.1E-25 186.3 14.9 196 361-612 32-237 (239)
94 4glp_A Monocyte differentiatio 99.8 2.4E-21 8E-26 195.2 12.1 231 28-300 65-306 (310)
95 2o6s_A Variable lymphocyte rec 99.8 5.2E-20 1.8E-24 173.7 15.0 160 4-176 29-188 (208)
96 4ay9_X Follicle-stimulating ho 99.8 1.1E-19 3.9E-24 186.1 15.7 239 6-271 12-254 (350)
97 2o6s_A Variable lymphocyte rec 99.8 3.1E-19 1E-23 168.4 17.3 179 6-238 10-188 (208)
98 3cvr_A Invasion plasmid antige 99.8 1.8E-19 6.3E-24 193.7 16.2 79 556-643 163-248 (571)
99 2v70_A SLIT-2, SLIT homolog 2 99.8 1.2E-19 4.2E-24 172.2 12.4 157 435-643 14-171 (220)
100 3cvr_A Invasion plasmid antige 99.8 2.4E-19 8.3E-24 192.8 14.8 188 361-625 60-254 (571)
101 4ay9_X Follicle-stimulating ho 99.8 4.2E-19 1.5E-23 181.8 15.9 244 334-638 11-259 (350)
102 2v9t_B SLIT homolog 2 protein 99.8 1.8E-18 6E-23 164.2 15.4 154 435-640 14-167 (220)
103 1h6t_A Internalin B; cell adhe 99.8 4.8E-18 1.6E-22 168.8 17.6 185 9-229 30-214 (291)
104 3e6j_A Variable lymphocyte rec 99.8 3.9E-18 1.3E-22 163.0 16.0 158 434-644 21-178 (229)
105 1h6t_A Internalin B; cell adhe 99.8 5.1E-18 1.8E-22 168.6 17.4 169 2-190 45-213 (291)
106 2xot_A Amphoterin-induced prot 99.8 2.4E-18 8.3E-23 176.9 14.2 180 6-229 21-203 (361)
107 2v70_A SLIT-2, SLIT homolog 2 99.8 1.2E-17 4E-22 158.5 16.5 154 6-191 14-167 (220)
108 4ezg_A Putative uncharacterize 99.8 4.6E-18 1.6E-22 158.6 13.0 153 24-190 41-194 (197)
109 2v9t_B SLIT homolog 2 protein 99.8 1E-17 3.6E-22 158.8 15.7 152 6-190 14-165 (220)
110 1m9s_A Internalin B; cell inva 99.7 4.4E-18 1.5E-22 185.3 13.4 127 358-495 41-167 (605)
111 1m9s_A Internalin B; cell inva 99.7 3.7E-18 1.3E-22 185.9 12.1 190 7-232 25-214 (605)
112 2xot_A Amphoterin-induced prot 99.7 1.4E-17 4.6E-22 171.3 15.5 177 30-253 21-203 (361)
113 3e6j_A Variable lymphocyte rec 99.7 4.8E-17 1.6E-21 155.4 18.2 152 5-190 21-172 (229)
114 1w8a_A SLIT protein; signaling 99.7 2.5E-17 8.5E-22 152.6 13.5 154 460-664 11-166 (192)
115 4ezg_A Putative uncharacterize 99.7 1.1E-17 3.8E-22 155.9 11.0 80 556-639 115-195 (197)
116 3sb4_A Hypothetical leucine ri 99.7 8.3E-18 2.9E-22 170.6 10.8 284 288-632 25-328 (329)
117 1xeu_A Internalin C; cellular 99.7 1.1E-17 3.7E-22 163.4 9.4 122 5-138 21-142 (263)
118 1xeu_A Internalin C; cellular 99.7 8.5E-18 2.9E-22 164.2 7.5 171 358-592 17-187 (263)
119 1w8a_A SLIT protein; signaling 99.7 9.6E-17 3.3E-21 148.7 14.1 133 6-142 11-144 (192)
120 3sb4_A Hypothetical leucine ri 99.7 4.2E-17 1.4E-21 165.5 12.1 102 176-294 225-327 (329)
121 1dce_A Protein (RAB geranylger 99.7 3.6E-19 1.2E-23 192.7 -3.8 85 556-643 466-551 (567)
122 2wfh_A SLIT homolog 2 protein 99.7 7.1E-16 2.4E-20 142.7 15.4 130 6-140 13-142 (193)
123 1dce_A Protein (RAB geranylger 99.7 2.2E-18 7.6E-23 186.5 -3.8 197 381-632 346-567 (567)
124 4b8c_D Glucose-repressible alc 99.7 4.5E-17 1.6E-21 182.1 6.6 191 365-614 206-404 (727)
125 4b8c_D Glucose-repressible alc 99.6 7.8E-17 2.7E-21 180.1 6.7 155 18-187 215-369 (727)
126 2o6r_A Variable lymphocyte rec 99.6 4.8E-15 1.6E-19 135.5 17.3 134 5-142 9-142 (177)
127 2ell_A Acidic leucine-rich nuc 99.6 4.2E-16 1.4E-20 141.3 9.9 137 27-167 24-161 (168)
128 2je0_A Acidic leucine-rich nuc 99.6 6.7E-16 2.3E-20 136.8 10.0 111 27-139 17-128 (149)
129 4fdw_A Leucine rich hypothetic 99.6 1.7E-14 6E-19 149.1 22.0 267 3-298 113-380 (401)
130 2wfh_A SLIT homolog 2 protein 99.6 2.7E-15 9.3E-20 138.8 14.3 129 460-640 13-141 (193)
131 2ell_A Acidic leucine-rich nuc 99.6 5.4E-16 1.9E-20 140.5 9.1 83 556-638 74-160 (168)
132 2je0_A Acidic leucine-rich nuc 99.6 6.5E-16 2.2E-20 136.8 7.3 128 456-633 16-148 (149)
133 2o6r_A Variable lymphocyte rec 99.6 4.9E-15 1.7E-19 135.4 13.0 89 556-644 55-143 (177)
134 4fs7_A Uncharacterized protein 99.6 2.3E-14 8E-19 149.1 19.1 101 356-462 293-393 (394)
135 4fdw_A Leucine rich hypothetic 99.6 1.1E-13 3.6E-18 143.2 21.8 242 4-276 136-383 (401)
136 1a9n_A U2A', U2A'; complex (nu 99.6 7.4E-15 2.5E-19 134.0 9.6 137 23-166 15-153 (176)
137 1a9n_A U2A', U2A'; complex (nu 99.5 1.8E-14 6.1E-19 131.4 9.5 129 2-137 18-153 (176)
138 4fs7_A Uncharacterized protein 99.5 8.5E-13 2.9E-17 137.3 22.0 60 568-630 334-393 (394)
139 1ds9_A Outer arm dynein; leuci 99.5 4.1E-16 1.4E-20 145.4 -4.6 129 455-638 46-185 (198)
140 3g39_A Variable lymphocyte rec 99.5 3.4E-13 1.2E-17 121.8 13.0 109 29-141 11-119 (170)
141 3g39_A Variable lymphocyte rec 99.5 2.9E-13 1E-17 122.2 12.6 107 5-115 11-117 (170)
142 2r9u_A Variable lymphocyte rec 99.4 5.4E-13 1.9E-17 120.9 12.5 108 30-141 15-122 (174)
143 2r9u_A Variable lymphocyte rec 99.4 6.1E-13 2.1E-17 120.5 12.6 106 5-114 14-119 (174)
144 1ds9_A Outer arm dynein; leuci 99.4 2.7E-15 9.3E-20 139.8 -4.1 132 427-614 43-185 (198)
145 3un9_A NLR family member X1; l 99.4 2.1E-14 7.2E-19 147.0 -1.2 138 52-190 101-252 (372)
146 4gt6_A Cell surface protein; l 99.4 6.2E-11 2.1E-15 123.2 23.1 128 358-493 263-390 (394)
147 3un9_A NLR family member X1; l 99.3 5.2E-13 1.8E-17 136.6 2.2 172 51-233 71-257 (372)
148 4gt6_A Cell surface protein; l 99.3 9.3E-10 3.2E-14 114.2 25.6 42 569-613 349-390 (394)
149 2ifg_A High affinity nerve gro 99.2 4.6E-11 1.6E-15 122.0 11.0 106 31-140 12-119 (347)
150 2ifg_A High affinity nerve gro 99.2 6.2E-11 2.1E-15 121.0 11.2 105 6-114 11-117 (347)
151 4h09_A Hypothetical leucine ri 99.1 8E-09 2.7E-13 106.7 24.2 72 359-432 285-356 (379)
152 4h09_A Hypothetical leucine ri 99.0 5.1E-08 1.8E-12 100.6 23.0 108 378-489 211-318 (379)
153 2ra8_A Uncharacterized protein 98.8 4.2E-09 1.4E-13 106.6 6.6 59 576-636 278-341 (362)
154 2ra8_A Uncharacterized protein 98.8 4.2E-09 1.4E-13 106.6 4.8 164 22-190 134-320 (362)
155 1io0_A Tropomodulin; LRR prote 98.6 4.1E-08 1.4E-12 89.5 5.9 92 48-139 32-138 (185)
156 1io0_A Tropomodulin; LRR prote 98.6 5.7E-08 1.9E-12 88.6 6.0 121 68-189 28-163 (185)
157 3rw6_A Nuclear RNA export fact 98.3 5.5E-07 1.9E-11 86.1 4.7 67 575-643 168-238 (267)
158 3rw6_A Nuclear RNA export fact 98.2 2.6E-07 8.8E-12 88.4 2.2 81 550-632 167-258 (267)
159 3e4g_A ATP synthase subunit S, 98.2 1.1E-06 3.7E-11 77.7 4.0 86 50-135 59-150 (176)
160 3e4g_A ATP synthase subunit S, 98.0 8.8E-07 3E-11 78.2 1.2 83 554-636 62-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.5 9.4E-05 3.2E-09 66.6 6.0 84 50-133 39-135 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.5 0.00014 4.7E-09 65.5 6.1 119 70-189 35-169 (197)
163 3rfe_A Platelet glycoprotein I 96.8 0.0018 6.1E-08 54.3 6.1 56 556-613 11-67 (130)
164 3rfe_A Platelet glycoprotein I 96.7 0.0027 9.3E-08 53.2 6.3 57 580-638 11-68 (130)
165 2lz0_A Uncharacterized protein 69.9 10 0.00035 29.4 6.0 49 12-62 5-53 (100)
166 2lz0_A Uncharacterized protein 66.0 11 0.00039 29.1 5.6 45 64-109 8-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.1e-76 Score=674.20 Aligned_cols=648 Identities=31% Similarity=0.427 Sum_probs=493.3
Q ss_pred CCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCch--hhcCCCCCCEEEcCCCcCcccCCccC-CCCCCCCE
Q 036216 4 SLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPA--WVFGLSRLHFLNLGYNNFQGPIPEGL-QNLTSLKH 80 (695)
Q Consensus 4 ~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~--~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~ 80 (695)
.|+.++++.+.+..++. .|..+++|++|+|++|.+.+. +|. .++++++|++|+|++|.+.+..|..+ .++++|++
T Consensus 78 ~L~~l~~~~~~~~~l~~-~~~~l~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 155 (768)
T 3rgz_A 78 GLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV 155 (768)
T ss_dssp TCCEEECTTSCEEECCC-CCCCCTTCCEEECCSSEEEEE-GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSE
T ss_pred cccccCCcCCCcCCCch-hhccCCCCCEEECCCCcCCCc-CCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCE
Confidence 33444444443333222 455555555555555555543 444 55555555555555555554444443 55555555
Q ss_pred EeCCCCCCCCCchhh---hcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccce
Q 036216 81 LGLPFNHFSSSVPKW---FDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLES 157 (695)
Q Consensus 81 L~L~~n~l~~~~p~~---~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~ 157 (695)
|++++|.+++..|.. +.++++|++|++++|.+.+..+. ..+++|++|++++|.+.+..+. ++.++. |++
T Consensus 156 L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-----l~~l~~-L~~ 227 (768)
T 3rgz_A 156 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-----LGDCSA-LQH 227 (768)
T ss_dssp EECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-----CTTCCS-CCE
T ss_pred EECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-----cccCCC-CCE
Confidence 555555555554444 45555555555555555543332 4555566666665555544332 233333 566
Q ss_pred EEccCcccccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCC
Q 036216 158 LALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIP 237 (695)
Q Consensus 158 L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 237 (695)
|++++|.+++..|..++.+++|++|++++|.+ .+.++.. .+++|+.|++++|.+.+..+..+..
T Consensus 228 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l-------------~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~ 291 (768)
T 3rgz_A 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQF-------------VGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSG 291 (768)
T ss_dssp EECCSSCCCSCHHHHTTTCSSCCEEECCSSCC-------------EESCCCC---CCTTCCEEECCSSEEEESCCCCSCT
T ss_pred EECcCCcCCCcccHHHhcCCCCCEEECCCCcc-------------cCccCcc---ccCCCCEEECcCCccCCccCHHHHh
Confidence 66666665555555555666666666655554 4566652 8899999999999999888888876
Q ss_pred C-CCccEEEccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHhhcccccceeeccccccccccc-CccccC-ccc
Q 036216 238 P-FQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELT-NLTKAS-QLS 314 (695)
Q Consensus 238 ~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~-~L~ 314 (695)
. ++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|...+..+++|++|++++|.+.+.++ .+..++ +|+
T Consensus 292 ~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~ 371 (768)
T 3rgz_A 292 ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLL 371 (768)
T ss_dssp TCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCS
T ss_pred hcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCc
Confidence 5 9999999999999999999999999999999999999999999888899999999999999987666 666676 999
Q ss_pred eEecccccceeecCCC-----CCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEE
Q 036216 315 YLSLIANNFSGSLPLI-----SSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMAL 389 (695)
Q Consensus 315 ~L~l~~n~~~~~~~~~-----~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 389 (695)
+|++++|.+.+..+.. +++|++|++++|.+++.+|..+. .+++|+.|++++|.+++.+|..+..+++|++|
T Consensus 372 ~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~----~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 447 (768)
T 3rgz_A 372 TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS----NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 447 (768)
T ss_dssp EEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGG----GCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred EEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHh----cCCCCCEEECcCCcccCcccHHHhcCCCCCEE
Confidence 9999999999887765 45799999999999887776554 59999999999999999999999999999999
Q ss_pred eCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcc
Q 036216 390 DLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNF 469 (695)
Q Consensus 390 ~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~ 469 (695)
++++|.+.+.+|..+..+++|++|++++|++.+.+|..+..+++|+.|++++|.+.+.+|.++. .+++|++|++++|++
T Consensus 448 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l 526 (768)
T 3rgz_A 448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSF 526 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSCC
T ss_pred ECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh-cCCCCCEEECCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999887 799999999999999
Q ss_pred cccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCC--------------CCCCc---
Q 036216 470 DGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNST--------------IGPGT--- 532 (695)
Q Consensus 470 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~--------------~~~~~--- 532 (695)
++.+|..++.+++|++|++++|+++|.+|..+.....+..++...+..+.+....... .....
T Consensus 527 ~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (768)
T 3rgz_A 527 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR 606 (768)
T ss_dssp EEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGG
T ss_pred cCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhc
Confidence 9999999999999999999999999999999888777665554443332221110000 00000
Q ss_pred ccc-----ceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEE
Q 036216 533 VTE-----QELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESID 607 (695)
Q Consensus 533 ~~~-----~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 607 (695)
+.. .......+........++.++.||+++|+++|.+|..++++++|++|+|++|+++|.+|+.|+++++|+.||
T Consensus 607 l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~Ld 686 (768)
T 3rgz_A 607 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 686 (768)
T ss_dssp GGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred cccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEE
Confidence 000 000111122222334567899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccCCcCCcCCCCCCEEEcccCcCcccCCCCcccCccccccccCC-cccCCCCCCCCCCCCCCCCCCCCCC
Q 036216 608 FSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSFNASCFLGN-NLCGAPLPKNCTDENVSIPEDVNGE 683 (695)
Q Consensus 608 Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~iP~~~~~~~~~~~~~~~n-~l~~~~~~~~c~~~~~~~~~~~~~~ 683 (695)
|++|+++|.+|..++.+++|++||+++|+++|.||+.+++.++...+|.|| .|||+|++ +|.......|++..+.
T Consensus 687 Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~~~~~~~~~~~ 762 (768)
T 3rgz_A 687 LSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSNADGYAHHQRS 762 (768)
T ss_dssp CCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC----------
T ss_pred CCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCccCCCCCCCCc
Confidence 999999999999999999999999999999999999999999999999999 89999987 8998888777665553
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=9e-69 Score=609.33 Aligned_cols=631 Identities=29% Similarity=0.406 Sum_probs=545.6
Q ss_pred CCCcEEEcCCCcCCCC---CccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCc--cCCCCCC
Q 036216 3 PSLVELDLSNCQLHHF---PQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPE--GLQNLTS 77 (695)
Q Consensus 3 ~~L~~L~ls~~~l~~~---~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~--~~~~l~~ 77 (695)
.+++.|+|+++.+.+. .+.++.++++|+.++++.+.+.. .|..++.+++|++|+|++|.+.+.+|. .++++++
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~--l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~ 127 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHING--SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSG 127 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEE--CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTT
T ss_pred CcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCC--CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCC
Confidence 3688999999998874 34578999999999999998865 678899999999999999999988888 9999999
Q ss_pred CCEEeCCCCCCCCCchhhh-cCCCCCCEEEcccCcCCcccchh---hcCCCCCCEEEccCCcCccccchhhhhhhccccc
Q 036216 78 LKHLGLPFNHFSSSVPKWF-DRLTHLEHLSLSYNSLEGRIPRS---MARLCNLRRLYLGGAKLNQEISEILEIFSGCVSN 153 (695)
Q Consensus 78 L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 153 (695)
|++|++++|.+.+..|..+ .++++|++|++++|.+++..|.. +.++++|++|++++|.+.+..+. ..+..
T Consensus 128 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~------~~l~~ 201 (768)
T 3rgz_A 128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV------SRCVN 201 (768)
T ss_dssp CCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC------TTCTT
T ss_pred CCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc------ccCCc
Confidence 9999999999988877766 88999999999999999888877 88999999999999999876543 34555
Q ss_pred ccceEEccCcccccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCC
Q 036216 154 GLESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKR 233 (695)
Q Consensus 154 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~ 233 (695)
|++|++++|.+.+.+|. ++.+++|++|++++|.++ +.++. .+.++++|++|++++|.+.+..+.
T Consensus 202 -L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~-------------~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~ 265 (768)
T 3rgz_A 202 -LEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLS-------------GDFSR-AISTCTELKLLNISSNQFVGPIPP 265 (768)
T ss_dssp -CCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCC-------------SCHHH-HTTTCSSCCEEECCSSCCEESCCC
T ss_pred -CCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCC-------------CcccH-HHhcCCCCCEEECCCCcccCccCc
Confidence 99999999999998887 999999999999999986 23444 789999999999999999877666
Q ss_pred CCCCCCCccEEEccCCCCCCCCCccccCC-CCCCEEEcccCCCccccChHHhhcccccceeeccccccccccc-C-cccc
Q 036216 234 DWIPPFQLIELGLRSCDVGSRFPLWLYSQ-KDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELT-N-LTKA 310 (695)
Q Consensus 234 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~-~~~~ 310 (695)
. .+++|++|++++|.+.+.+|.++... ++|++|++++|.+.+.+|..+ ..+++|++|++++|.+.+.++ . +..+
T Consensus 266 ~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~ip~~~l~~l 342 (768)
T 3rgz_A 266 L--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF-GSCSLLESLALSSNNFSGELPMDTLLKM 342 (768)
T ss_dssp C--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGG-GGCTTCCEEECCSSEEEEECCHHHHTTC
T ss_pred c--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHH-hcCCCccEEECCCCcccCcCCHHHHhcC
Confidence 5 88999999999999998899888775 999999999999998887765 679999999999999997766 3 7889
Q ss_pred CccceEecccccceeecCCCC----CCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCC
Q 036216 311 SQLSYLSLIANNFSGSLPLIS----SNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNL 386 (695)
Q Consensus 311 ~~L~~L~l~~n~~~~~~~~~~----~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L 386 (695)
++|++|++++|.+.+.+|..+ ++|+.|++++|.+++.++..++. ..+++|++|++++|.+++.+|..+..+++|
T Consensus 343 ~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~--~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L 420 (768)
T 3rgz_A 343 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ--NPKNTLQELYLQNNGFTGKIPPTLSNCSEL 420 (768)
T ss_dssp TTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTC--STTCCCCEEECCSSEEEEECCGGGGGCTTC
T ss_pred CCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhh--cccCCccEEECCCCccccccCHHHhcCCCC
Confidence 999999999999999888764 38999999999998877765542 126789999999999999999999999999
Q ss_pred CEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCC
Q 036216 387 MALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRS 466 (695)
Q Consensus 387 ~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 466 (695)
++|++++|.+++..|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+. .+++|++|++++
T Consensus 421 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~L~~ 499 (768)
T 3rgz_A 421 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS-NCTNLNWISLSN 499 (768)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCS
T ss_pred CEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHh-cCCCCCEEEccC
Confidence 9999999999999999999999999999999999999999999999999999999999999998886 799999999999
Q ss_pred CcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCC--CCCCCCCc---cccceEEE-
Q 036216 467 NNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPL--NSTIGPGT---VTEQELVV- 540 (695)
Q Consensus 467 n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~--~~~~~~~~---~~~~~~~~- 540 (695)
|++++.+|.+++.+++|++|++++|++++.+|..+..+++|+.++ ++++.+....+. +....... ........
T Consensus 500 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~-Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~ 578 (768)
T 3rgz_A 500 NRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD-LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYI 578 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEE-CCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEE
T ss_pred CccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEE-CCCCccCCcCChHHhcccchhhhhcccccccccc
Confidence 999999999999999999999999999999999999999999998 344444322221 11000000 00000000
Q ss_pred -----------------ecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCC
Q 036216 541 -----------------TKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSL 603 (695)
Q Consensus 541 -----------------~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 603 (695)
..+........+..++.++++.|.+.|.+|..++.+++|+.|||++|+++|.+|..|+++++|
T Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L 658 (768)
T 3rgz_A 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL 658 (768)
T ss_dssp ECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTC
T ss_pred ccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccC
Confidence 111222223445556778889999999999999999999999999999999999999999999
Q ss_pred CEEECCCCcccccCCcCCcCCCCCCEEEcccCcCcccCCCC-cccCccccccccCCcccCCC
Q 036216 604 ESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSS-TQLQSFNASCFLGNNLCGAP 664 (695)
Q Consensus 604 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~iP~~-~~~~~~~~~~~~~n~l~~~~ 664 (695)
+.|+|++|+++|.+|+.++.+++|++|||++|+++|.+|.. ..+..+....+.+|.+.|..
T Consensus 659 ~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~i 720 (768)
T 3rgz_A 659 FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEEC
T ss_pred CEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccC
Confidence 99999999999999999999999999999999999999987 67888899999999887653
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=8.4e-60 Score=531.71 Aligned_cols=584 Identities=21% Similarity=0.188 Sum_probs=449.4
Q ss_pred CCCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEe
Q 036216 3 PSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLG 82 (695)
Q Consensus 3 ~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 82 (695)
+++++|++++|.++.+++..|.++++|++|++++|.+++. .|+++.++++|++|+|++|.++...+.+|.++++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 4688888888888888887888888888888888888876 677788888888888888888866666788888888888
Q ss_pred CCCCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccC
Q 036216 83 LPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALAS 162 (695)
Q Consensus 83 L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~ 162 (695)
+++|.+++..|..|+++++|++|++++|.+.+..|..++++++|++|++++|.+++..+..+. ...... |++|++++
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~~~~~~-L~~L~L~~ 180 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELD--IFANSS-LKKLELSS 180 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHG--GGTTCE-ESEEECTT
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhh--cccccc-ccEEECCC
Confidence 888888877777888888888888888888877777888888888888888888776655221 112233 88888888
Q ss_pred cccccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCC--
Q 036216 163 SSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQ-- 240 (695)
Q Consensus 163 n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-- 240 (695)
|.+.+..+..+..+++|+.|+++++.+... ....++. ....++|+.|++++|.+.+..+..+..+..
T Consensus 181 n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~---------~~~~~~~--~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~ 249 (680)
T 1ziw_A 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPS---------LTEKLCL--ELANTSIRNLSLSNSQLSTTSNTTFLGLKWTN 249 (680)
T ss_dssp CCCCCBCTTGGGGSSEECEEECTTCCCHHH---------HHHHHHH--HHTTSCCCEEECTTSCCCEECTTTTGGGGGSC
T ss_pred CcccccChhhhhhhhhhhhhhccccccChh---------hHHHHHH--HhhhccccEEEccCCcccccChhHhhccCcCC
Confidence 888888888888888888888887765310 0001111 114578899999999988888888877654
Q ss_pred ccEEEccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHhhcccccceeeccccccccc-----cc-----Ccccc
Q 036216 241 LIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGE-----LT-----NLTKA 310 (695)
Q Consensus 241 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~-----~~~~~ 310 (695)
|++|++++|.+.+..|.++..+++|++|++++|.+.+..|. .+..+++|+.|++++|...+. ++ .+..+
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l 328 (680)
T 1ziw_A 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH-SLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL 328 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTT-TTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC
T ss_pred CCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChh-hhcCCCCccEEeccchhhhcccccccccccChhhcccC
Confidence 99999999998888888888899999999999988854443 456788999999988755431 11 45667
Q ss_pred CccceEecccccceeecCCC---CCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCC
Q 036216 311 SQLSYLSLIANNFSGSLPLI---SSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLM 387 (695)
Q Consensus 311 ~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 387 (695)
++|++|++++|.+.+..+.. +++|++|++++|.+...........-...++|+.|++++|.+++..|.+|..+++|+
T Consensus 329 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 408 (680)
T 1ziw_A 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE 408 (680)
T ss_dssp TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCC
Confidence 88889999888888766554 467888888888764332211111111135788888888888888888888888899
Q ss_pred EEeCCCCcccccCC-ccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCccc--ccCChhhhhcCCCCcEEEc
Q 036216 388 ALDLSNNKFTGNLP-TSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVF--GNIPSWFGERFSRMVLLIL 464 (695)
Q Consensus 388 ~L~ls~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~--~~~~~~~~~~l~~L~~L~l 464 (695)
.|++++|.+.+.+| ..|..+++|++|++++|++.+..+..|..+++|+.|++++|.+. +.+|..+. .+++|+.|++
T Consensus 409 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~-~l~~L~~L~L 487 (680)
T 1ziw_A 409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ-PLRNLTILDL 487 (680)
T ss_dssp EEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT-TCTTCCEEEC
T ss_pred EEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccc-cCCCCCEEEC
Confidence 99999888876555 67888888999999998888777888888888999999888775 45666665 6888888999
Q ss_pred CCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCC
Q 036216 465 RSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGV 544 (695)
Q Consensus 465 ~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (695)
++|++++..+..|..+++|++|++++|++++..+..+..-+
T Consensus 488 s~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~--------------------------------------- 528 (680)
T 1ziw_A 488 SNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGP--------------------------------------- 528 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSC---------------------------------------
T ss_pred CCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCc---------------------------------------
Confidence 88888877777788888889999988888743322211000
Q ss_pred cchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCc-C
Q 036216 545 AADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMS-S 623 (695)
Q Consensus 545 ~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~-~ 623 (695)
......++.|+.|++++|+++...+..|.++++|++|++++|++++..+..|+.+++|+.|++++|++++..|..+. .
T Consensus 529 -~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 607 (680)
T 1ziw_A 529 -IYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPA 607 (680)
T ss_dssp -CCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHH
T ss_pred -chhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhccc
Confidence 00112345568999999999955556799999999999999999977777789999999999999999987777777 7
Q ss_pred CCCCCEEEcccCcCcccCCC
Q 036216 624 LTFLNHLNLSNNYLTGKIPS 643 (695)
Q Consensus 624 l~~L~~L~ls~N~l~~~iP~ 643 (695)
+++|++|++++|++.+..+.
T Consensus 608 ~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 608 FRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp HTTCSEEECTTCCCCBCCCC
T ss_pred ccccCEEEccCCCcccCCcc
Confidence 89999999999999987764
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.4e-58 Score=521.79 Aligned_cols=577 Identities=23% Similarity=0.256 Sum_probs=460.9
Q ss_pred CcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCC
Q 036216 5 LVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLP 84 (695)
Q Consensus 5 L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 84 (695)
-+.+++++++++.+|.. +. +++++|++++|.+++. .+..|.++++|++|++++|.+++..|.+|.++++|++|+++
T Consensus 6 ~~~~~cs~~~L~~ip~~-~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 81 (680)
T 1ziw_A 6 HEVADCSHLKLTQVPDD-LP--TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 81 (680)
T ss_dssp SSEEECCSSCCSSCCSC-SC--TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECC
T ss_pred CCeeECCCCCccccccc-cC--CCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECC
Confidence 46799999999999973 33 7999999999999985 66679999999999999999998889999999999999999
Q ss_pred CCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcc
Q 036216 85 FNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSS 164 (695)
Q Consensus 85 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~ 164 (695)
+|.+++..+..|+++++|++|++++|.+.+..|..|+++++|++|++++|.+.+..+. .++.+.+ |++|++++|.
T Consensus 82 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~-L~~L~L~~n~ 156 (680)
T 1ziw_A 82 HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG----TQVQLEN-LQELLLSNNK 156 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCC----SSSCCTT-CCEEECCSSC
T ss_pred CCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCch----hhccccc-CCEEEccCCc
Confidence 9999976666899999999999999999987778999999999999999999887666 4556666 9999999999
Q ss_pred cccccchhcC--CCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCC---CCCC
Q 036216 165 ISGHLTDQLG--QFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDW---IPPF 239 (695)
Q Consensus 165 ~~~~~~~~l~--~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~~~ 239 (695)
+++..+..+. .+++|++|++++|.++ .+++..|..+++|+.+++.++.+.......+ ....
T Consensus 157 l~~~~~~~~~~~~~~~L~~L~L~~n~l~--------------~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~ 222 (680)
T 1ziw_A 157 IQALKSEELDIFANSSLKKLELSSNQIK--------------EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANT 222 (680)
T ss_dssp CCCBCHHHHGGGTTCEESEEECTTCCCC--------------CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTS
T ss_pred ccccCHHHhhccccccccEEECCCCccc--------------ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhc
Confidence 9988877665 4589999999999886 4555578889999999998887653222111 1346
Q ss_pred CccEEEccCCCCCCCCCccccCCCC--CCEEEcccCCCccccChHHhhcccccceeeccccccccccc-CccccCccceE
Q 036216 240 QLIELGLRSCDVGSRFPLWLYSQKD--LQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELT-NLTKASQLSYL 316 (695)
Q Consensus 240 ~L~~L~l~~~~~~~~~~~~l~~~~~--L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~L~~L 316 (695)
.|+.|++++|.+.+..|.++..++. |++|++++|.+.+ ++...+..+++|+.|++++|.+.+..+ .+..+++|++|
T Consensus 223 ~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 301 (680)
T 1ziw_A 223 SIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV-VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 301 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEE
T ss_pred cccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCc-cCcccccCcccccEeeCCCCccCccChhhhcCCCCccEE
Confidence 8999999999998888888877754 9999999999884 444445778999999999999887766 67788899999
Q ss_pred ecccccceee-----cC-------CCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCC--CCccccC
Q 036216 317 SLIANNFSGS-----LP-------LISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGK--LPDCWMS 382 (695)
Q Consensus 317 ~l~~n~~~~~-----~~-------~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~ 382 (695)
++++|...+. +| ..+++|+.|++++|.+.+..+.. |..+++|++|++++|.+... ....|..
T Consensus 302 ~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~ 377 (680)
T 1ziw_A 302 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM----FTGLINLKYLSLSNSFTSLRTLTNETFVS 377 (680)
T ss_dssp ECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTT----TTTCTTCCEEECTTCBSCCCEECTTTTGG
T ss_pred eccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhH----hccccCCcEEECCCCchhhhhcchhhhcc
Confidence 9987654431 22 12467888888888887654433 34578888888888764322 2223332
Q ss_pred C--CCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCC-ccccCCCCCcEEEcCCCcccccCChhhhhcCCCC
Q 036216 383 Y--QNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIP-ILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRM 459 (695)
Q Consensus 383 ~--~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 459 (695)
+ ++|+.|++++|++++..|..|..+++|++|++++|.+.+.+| ..|.++++|++|++++|.+.+..+..+. .+++|
T Consensus 378 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~~~~L 456 (680)
T 1ziw_A 378 LAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA-LVPSL 456 (680)
T ss_dssp GTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTT-TCTTC
T ss_pred cccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhh-cCccc
Confidence 2 578888888888887778888888888888888888876555 5777888888888888887655555554 68888
Q ss_pred cEEEcCCCccc--ccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccce
Q 036216 460 VLLILRSNNFD--GPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQE 537 (695)
Q Consensus 460 ~~L~l~~n~~~--~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~ 537 (695)
+.|++++|.+. +..|..+..+++|++|++++|++++..|..|.++++|
T Consensus 457 ~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L------------------------------ 506 (680)
T 1ziw_A 457 QRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL------------------------------ 506 (680)
T ss_dssp CEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC------------------------------
T ss_pred ccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcccccc------------------------------
Confidence 88888888776 4667778888888888888888886666666666655
Q ss_pred EEEecCCcchhhhhcccccEEEcCCccccccCC--------ccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECC
Q 036216 538 LVVTKGVAADYNEILNLVRIIDFSKNLFSGTLP--------MGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFS 609 (695)
Q Consensus 538 ~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p--------~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 609 (695)
++|++++|++++..+ ..|.++++|++|+|++|+++...++.|+++++|+.|+++
T Consensus 507 ------------------~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 568 (680)
T 1ziw_A 507 ------------------EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLG 568 (680)
T ss_dssp ------------------CEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred ------------------CEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECC
Confidence 889999999986532 237899999999999999995555679999999999999
Q ss_pred CCcccccCCcCCcCCCCCCEEEcccCcCcccCCCC-c-ccCccccccccCC
Q 036216 610 VNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSS-T-QLQSFNASCFLGN 658 (695)
Q Consensus 610 ~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~iP~~-~-~~~~~~~~~~~~n 658 (695)
+|++++..+..|..+++|++|++++|++++..|.. . .+.++....+.||
T Consensus 569 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N 619 (680)
T 1ziw_A 569 LNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 619 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTC
T ss_pred CCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCC
Confidence 99999777777899999999999999999877764 2 5677777777776
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.8e-55 Score=486.33 Aligned_cols=534 Identities=20% Similarity=0.185 Sum_probs=406.4
Q ss_pred CcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCC
Q 036216 5 LVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLP 84 (695)
Q Consensus 5 L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 84 (695)
-+++++++..++.+|.. +. +++++|++++|.+++. .|..|.++++|++|+|++|.+.+..|.+|.++++|++|+++
T Consensus 14 ~~~~~c~~~~l~~iP~~-l~--~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 89 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGT-LP--NSTECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLT 89 (606)
T ss_dssp TTEEECTTSCCSSCCTT-SC--TTCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CceEECCCCCcccCcCC-CC--CcCcEEEccCCccCcC-ChhHhccCccceEEECCCCccceeChhhccCccccCeeeCC
Confidence 35688888888888863 32 4789999999999875 57788899999999999999988888889999999999999
Q ss_pred CCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcc
Q 036216 85 FNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSS 164 (695)
Q Consensus 85 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~ 164 (695)
+|.+++..|..|+++++|++|++++|.+++..+..++++++|++|++++|++.+....
T Consensus 90 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~---------------------- 147 (606)
T 3t6q_A 90 ANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLP---------------------- 147 (606)
T ss_dssp TCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCC----------------------
T ss_pred CCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcc----------------------
Confidence 9999888888899999999999999998876677888888888888888887653211
Q ss_pred cccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCC--EEEcccccceeecCCCCCCCCCcc
Q 036216 165 ISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLS--VFLVGANKLTLKVKRDWIPPFQLI 242 (695)
Q Consensus 165 ~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~--~L~l~~n~l~~~~~~~~~~~~~L~ 242 (695)
.+..+++|++|++++|.++ .+++..|+.+++|+ .+++++|.+.+..+..+.. ..++
T Consensus 148 -------~~~~l~~L~~L~L~~n~l~--------------~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~ 205 (606)
T 3t6q_A 148 -------KGFPTEKLKVLDFQNNAIH--------------YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQ 205 (606)
T ss_dssp -------TTCCCTTCCEEECCSSCCC--------------EECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEE
T ss_pred -------cccCCcccCEEEcccCccc--------------ccChhhhhhhcccceeEEecCCCccCccChhHhhh-cccc
Confidence 1222444455555544443 33333444455554 4455555554444433332 3555
Q ss_pred EEEccCCCCCCCCCccccCCCCCCEEEcccCCCc----cccChHHhhccc--ccceeeccccccccccc-CccccCccce
Q 036216 243 ELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGIS----GTFPNRLLKSAS--QLYLLDLGHNQIHGELT-NLTKASQLSY 315 (695)
Q Consensus 243 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~----~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~-~~~~~~~L~~ 315 (695)
++++++|. ..+..+..+.++....+.-.... ..++...+..+. +++.+++++|.+.+..+ .+..+++|++
T Consensus 206 ~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 282 (606)
T 3t6q_A 206 SLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQE 282 (606)
T ss_dssp EEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSE
T ss_pred ccccCCch---hHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCE
Confidence 55555553 22233333333322222211110 123333333333 67788888887776655 3666778888
Q ss_pred EecccccceeecCCC---CCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCc-cccCCCCCCEEeC
Q 036216 316 LSLIANNFSGSLPLI---SSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPD-CWMSYQNLMALDL 391 (695)
Q Consensus 316 L~l~~n~~~~~~~~~---~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~l 391 (695)
|++++|.+.. +|.. +++|++|++++|.+.+..+. .+..+++|+.|++++|.+.+.++. .+..+++|++|++
T Consensus 283 L~l~~n~l~~-lp~~l~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 357 (606)
T 3t6q_A 283 LDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQI----SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDL 357 (606)
T ss_dssp EECTTSCCSC-CCSSCCSCTTCCEEECTTCCCSBGGGG----CGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEEC
T ss_pred EeccCCccCC-CChhhcccccCCEEECccCCcCcCchh----hhhccCcCCEEECCCCCcccccchhhhhccCcCCEEEC
Confidence 8888887773 3332 36788888888888754443 344689999999999998866654 5889999999999
Q ss_pred CCCcccccC--CccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcc
Q 036216 392 SNNKFTGNL--PTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNF 469 (695)
Q Consensus 392 s~n~~~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~ 469 (695)
++|.+.+.. +..+..+++|++|++++|++.+..|..+..+++|++|++++|.+.+..+...+..+++|++|++++|.+
T Consensus 358 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 437 (606)
T 3t6q_A 358 SHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL 437 (606)
T ss_dssp CSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCC
T ss_pred CCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCcc
Confidence 999998765 778899999999999999999888999999999999999999998777765445799999999999999
Q ss_pred cccCCccccCCCCCCEEeCCCCcCcccC---ChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcc
Q 036216 470 DGPLPTELCDLAFLQILDLADNNLSGTI---PNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAA 546 (695)
Q Consensus 470 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~---p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (695)
.+..|..+..+++|++|++++|++++.. +..+..+++|
T Consensus 438 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L--------------------------------------- 478 (606)
T 3t6q_A 438 DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRL--------------------------------------- 478 (606)
T ss_dssp BTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTC---------------------------------------
T ss_pred CCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCc---------------------------------------
Confidence 9888999999999999999999998622 2345554444
Q ss_pred hhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCC
Q 036216 547 DYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTF 626 (695)
Q Consensus 547 ~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 626 (695)
+.|++++|++++..|..|..+++|++|+|++|++++..|+.++.+++| .|++++|++++..|..+..+++
T Consensus 479 ---------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~ 548 (606)
T 3t6q_A 479 ---------EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQ 548 (606)
T ss_dssp ---------CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHT
T ss_pred ---------cEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCC
Confidence 899999999999999999999999999999999999999999999999 9999999999888888999999
Q ss_pred CCEEEcccCcCcccCCC
Q 036216 627 LNHLNLSNNYLTGKIPS 643 (695)
Q Consensus 627 L~~L~ls~N~l~~~iP~ 643 (695)
|++|++++|++.+..+.
T Consensus 549 L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 549 QRTINLRQNPLDCTCSN 565 (606)
T ss_dssp SSEEECTTCCEECSGGG
T ss_pred CCEEeCCCCCccccCCc
Confidence 99999999999987664
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.8e-54 Score=479.10 Aligned_cols=533 Identities=20% Similarity=0.154 Sum_probs=410.9
Q ss_pred CcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCC
Q 036216 5 LVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLP 84 (695)
Q Consensus 5 L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 84 (695)
-++++++++.++.+|... .+++++|++++|.+++. .+..|.++++|++|++++|.+++..|.+|.++++|++|+++
T Consensus 13 ~~~~~c~~~~l~~ip~~~---~~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls 88 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDDI---PSSTKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88 (606)
T ss_dssp TTEEECTTSCCSSCCTTS---CTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CCceEccCCCcccCCCCC---CCCcCEEECCCCCcCEe-ChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECC
Confidence 357899999999998733 27899999999999875 56678899999999999999998888889999999999999
Q ss_pred CCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcc
Q 036216 85 FNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSS 164 (695)
Q Consensus 85 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~ 164 (695)
+|.+++..|.+|+++++|++|++++|.+.+..+..++++++|++|++++|.+.+..
T Consensus 89 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~------------------------ 144 (606)
T 3vq2_A 89 GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCK------------------------ 144 (606)
T ss_dssp TCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCC------------------------
T ss_pred CCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCccccee------------------------
Confidence 99999888889999999999999999998777788899999999999988876411
Q ss_pred cccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCC----CEEEcccccceeecCCCCCCCCC
Q 036216 165 ISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKL----SVFLVGANKLTLKVKRDWIPPFQ 240 (695)
Q Consensus 165 ~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L----~~L~l~~n~l~~~~~~~~~~~~~ 240 (695)
+|..++++++|++|++++|+++ .++...|+.+++| ..+++++|.+....+..+... +
T Consensus 145 ----lp~~~~~l~~L~~L~Ls~n~l~--------------~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~ 205 (606)
T 3vq2_A 145 ----LPAYFSNLTNLVHVDLSYNYIQ--------------TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-K 205 (606)
T ss_dssp ----CCGGGGTCTTCCEEECCSSCCC--------------EECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-E
T ss_pred ----chHhHhhcCCCCEEEccCCcce--------------ecChhhhhhhhccccccceeeccCCCcceeCcccccCc-e
Confidence 2334455555555555555543 2222233333322 255555555554444444333 5
Q ss_pred ccEEEccCCCCC-CCCCccccCCCCCCEEEcccCCCcc-----ccChHHhhccc--ccceeec-ccccccccccCccccC
Q 036216 241 LIELGLRSCDVG-SRFPLWLYSQKDLQFLDLFNSGISG-----TFPNRLLKSAS--QLYLLDL-GHNQIHGELTNLTKAS 311 (695)
Q Consensus 241 L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~i~~-----~~~~~~~~~l~--~L~~L~l-~~n~l~~~~~~~~~~~ 311 (695)
|++|++++|.+. +..|.++..++.++.+++..+.+.+ .++...+..+. .++.+++ ..+.+.+..+.+..++
T Consensus 206 L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~ 285 (606)
T 3vq2_A 206 LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLA 285 (606)
T ss_dssp EEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGT
T ss_pred eeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCC
Confidence 666666666554 3445566666666666664433221 12222222222 3555666 5666777777777788
Q ss_pred ccceEecccccceeecCCC--CCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEE
Q 036216 312 QLSYLSLIANNFSGSLPLI--SSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMAL 389 (695)
Q Consensus 312 ~L~~L~l~~n~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 389 (695)
+|+.|++++|.+.. +|.. +++|+.|++++|.+ +.+|.. .+++|+.|++++|...+.. .+..+++|++|
T Consensus 286 ~L~~L~l~~~~~~~-l~~l~~~~~L~~L~l~~n~l-~~lp~~------~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L 355 (606)
T 3vq2_A 286 NVSAMSLAGVSIKY-LEDVPKHFKWQSLSIIRCQL-KQFPTL------DLPFLKSLTLTMNKGSISF--KKVALPSLSYL 355 (606)
T ss_dssp TCSEEEEESCCCCC-CCCCCTTCCCSEEEEESCCC-SSCCCC------CCSSCCEEEEESCSSCEEC--CCCCCTTCCEE
T ss_pred CCCEEEecCccchh-hhhccccccCCEEEcccccC-cccccC------CCCccceeeccCCcCccch--hhccCCCCCEE
Confidence 88888888888754 3322 45888999999988 555532 4889999999999655443 56789999999
Q ss_pred eCCCCccccc--CCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCC
Q 036216 390 DLSNNKFTGN--LPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSN 467 (695)
Q Consensus 390 ~ls~n~~~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 467 (695)
++++|.+++. .|..+..+++|++|++++|.+.+ +|..+..+++|+.|++++|.+.+..|...+..+++|++|++++|
T Consensus 356 ~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 434 (606)
T 3vq2_A 356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434 (606)
T ss_dssp ECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTS
T ss_pred ECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCC
Confidence 9999999865 47888899999999999999885 56889999999999999999977777343447999999999999
Q ss_pred cccccCCccccCCCCCCEEeCCCCcCcc-cCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcc
Q 036216 468 NFDGPLPTELCDLAFLQILDLADNNLSG-TIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAA 546 (695)
Q Consensus 468 ~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (695)
++.+..|..+..+++|++|++++|++++ .+|..+..+++|
T Consensus 435 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L--------------------------------------- 475 (606)
T 3vq2_A 435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL--------------------------------------- 475 (606)
T ss_dssp CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC---------------------------------------
T ss_pred CCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCC---------------------------------------
Confidence 9999899999999999999999999987 367777777666
Q ss_pred hhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCCC-
Q 036216 547 DYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLT- 625 (695)
Q Consensus 547 ~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~- 625 (695)
+.|++++|++++..|..|..+++|++|++++|++++.+|..|+.+++|+.|++++|+++ .+|..+..++
T Consensus 476 ---------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~ 545 (606)
T 3vq2_A 476 ---------TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPK 545 (606)
T ss_dssp ---------CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCT
T ss_pred ---------CEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcc
Confidence 88999999999999999999999999999999999888999999999999999999999 6888899987
Q ss_pred CCCEEEcccCcCcccCCCC
Q 036216 626 FLNHLNLSNNYLTGKIPSS 644 (695)
Q Consensus 626 ~L~~L~ls~N~l~~~iP~~ 644 (695)
+|++|++++|++.+..|..
T Consensus 546 ~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 546 SLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp TCCEEECCSCCCCCSSTTH
T ss_pred cCcEEEccCCCcccCCccH
Confidence 5999999999999877753
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.2e-54 Score=477.98 Aligned_cols=516 Identities=20% Similarity=0.130 Sum_probs=403.4
Q ss_pred CCCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEe
Q 036216 3 PSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLG 82 (695)
Q Consensus 3 ~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 82 (695)
+++++|++++|.++.+++.+|.++++|++|++++|.+.++ .|+.|.++++|++|+|++|.+.+..|..|.++++|++|+
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCcccee-ChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 4689999999999999988999999999999999999886 788999999999999999999988899999999999999
Q ss_pred CCCCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccc--eEEc
Q 036216 83 LPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLE--SLAL 160 (695)
Q Consensus 83 L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~--~L~L 160 (695)
+++|.+++..|..|+++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+. .++.+.. ++ .|++
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~-L~~l~L~l 186 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE----DMSSLQQ-ATNLSLNL 186 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHH----HHHTTTT-CCSEEEEC
T ss_pred ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChh----hhhhhcc-cceeEEec
Confidence 999999987788899999999999999999975545555699999999999999887776 4555665 87 8999
Q ss_pred cCcccccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceee-----cCCCC
Q 036216 161 ASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLK-----VKRDW 235 (695)
Q Consensus 161 ~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~ 235 (695)
++|.+.+..+..+.. ..|++|++++|.. ++. .+.++..+....+....+... ....+
T Consensus 187 ~~n~l~~~~~~~~~~-~~L~~L~l~~~~~----------------~~~-~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~ 248 (606)
T 3t6q_A 187 NGNDIAGIEPGAFDS-AVFQSLNFGGTQN----------------LLV-IFKGLKNSTIQSLWLGTFEDMDDEDISPAVF 248 (606)
T ss_dssp TTCCCCEECTTTTTT-CEEEEEECTTCSC----------------HHH-HHHHTTTCEEEEEECCCCTTSCCCCCCGGGG
T ss_pred CCCccCccChhHhhh-ccccccccCCchh----------------HHH-HhhhccccchhheechhhccccccccChhHh
Confidence 999999987776654 6899999998762 121 445555555444433222111 11111
Q ss_pred CCCC--CccEEEccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHhhcccccceeeccccccccccc-CccccCc
Q 036216 236 IPPF--QLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELT-NLTKASQ 312 (695)
Q Consensus 236 ~~~~--~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~ 312 (695)
..+. +++.+++++|.+.+..+..+..+++|++|++++|.+. .+|..+ ..+++|++|++++|.+.+..+ .+..++
T Consensus 249 ~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~l~- 325 (606)
T 3t6q_A 249 EGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGL-VGLSTLKKLVLSANKFENLCQISASNFP- 325 (606)
T ss_dssp GGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSC-CSCTTCCEEECTTCCCSBGGGGCGGGCT-
T ss_pred chhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhh-cccccCCEEECccCCcCcCchhhhhccC-
Confidence 1111 4566666666666555555666666666666666655 555442 445556666666665554433 344444
Q ss_pred cceEecccccceeecCCCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCC--CccccCCCCCCEEe
Q 036216 313 LSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKL--PDCWMSYQNLMALD 390 (695)
Q Consensus 313 L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~ 390 (695)
+|+.|++++|.+.+.++.. .+..+++|++|++++|.+.+.. +..+..+++|++|+
T Consensus 326 --------------------~L~~L~l~~n~~~~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ 382 (606)
T 3t6q_A 326 --------------------SLTHLSIKGNTKRLELGTG---CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLN 382 (606)
T ss_dssp --------------------TCSEEECCSCSSCCBCCSS---TTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEE
T ss_pred --------------------cCCEEECCCCCcccccchh---hhhccCcCCEEECCCCccccccCcchhcccCCCCCEEE
Confidence 4555555555554333321 2335778888888888887655 66788899999999
Q ss_pred CCCCcccccCCccccCCCCCcEEECcCCcceeeCCc-cccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcc
Q 036216 391 LSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPI-LLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNF 469 (695)
Q Consensus 391 ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~ 469 (695)
+++|.+.+..|..|..+++|++|++++|++.+..+. .+..+++|++|++++|.+.+..|..+. .+++|++|++++|++
T Consensus 383 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l 461 (606)
T 3t6q_A 383 LSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD-GLPALQHLNLQGNHF 461 (606)
T ss_dssp CCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTT-TCTTCCEEECTTCBC
T ss_pred CCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHh-CCCCCCEEECCCCCC
Confidence 999999888888899999999999999999876654 488899999999999999777776665 699999999999998
Q ss_pred ccc---CCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcc
Q 036216 470 DGP---LPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAA 546 (695)
Q Consensus 470 ~~~---~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (695)
.+. .+..+..+++|++|++++|++++..|..|..+++|
T Consensus 462 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L--------------------------------------- 502 (606)
T 3t6q_A 462 PKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM--------------------------------------- 502 (606)
T ss_dssp GGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTC---------------------------------------
T ss_pred CccccccchhhccCCCccEEECCCCccCccChhhhccccCC---------------------------------------
Confidence 862 34678899999999999999998888888877766
Q ss_pred hhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCC
Q 036216 547 DYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIP 618 (695)
Q Consensus 547 ~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p 618 (695)
+.|++++|++++..|..+.+++.| +|++++|++++..|+.++.+++|+.|++++|.+.+..+
T Consensus 503 ---------~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 503 ---------NHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp ---------CEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred ---------CEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 889999999999999999999999 99999999998888889999999999999999986444
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.9e-53 Score=473.42 Aligned_cols=523 Identities=20% Similarity=0.179 Sum_probs=400.2
Q ss_pred CCCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEe
Q 036216 3 PSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLG 82 (695)
Q Consensus 3 ~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 82 (695)
+++++|++++|.++++++..|.++++|++|++++|.++++ .|.+|.++++|++|+|++|.+++..|+.|.++++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI-EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccccc-CHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 5799999999999999999999999999999999999985 678899999999999999999988899999999999999
Q ss_pred CCCCCCCCCchhhhcCCCCCCEEEcccCcCCc-ccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEcc
Q 036216 83 LPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEG-RIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALA 161 (695)
Q Consensus 83 L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~ 161 (695)
+++|.+++..+..|+++++|++|++++|.+.+ .+|..++++++|++|++++|++.+..+..+.. +..+...+++++++
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~~l~~L~l~ 189 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF-LRENPQVNLSLDMS 189 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHH-HHHCTTCCCEEECT
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhh-hhccccccceeecc
Confidence 99999998777889999999999999999986 56999999999999999999999877763321 22222225589999
Q ss_pred CcccccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCc
Q 036216 162 SSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQL 241 (695)
Q Consensus 162 ~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L 241 (695)
+|.+++..+..+... +|++|++++|.+. +...+..+.+++.++.+.+..+.+.....-...
T Consensus 190 ~n~l~~~~~~~~~~~-~L~~L~L~~n~~~-------------~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~----- 250 (606)
T 3vq2_A 190 LNPIDFIQDQAFQGI-KLHELTLRGNFNS-------------SNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF----- 250 (606)
T ss_dssp TCCCCEECTTTTTTC-EEEEEEEESCCSC-------------HHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC-----
T ss_pred CCCcceeCcccccCc-eeeeeeccCCccc-------------hhHHHHHhccccccccccccccccccCCccccc-----
Confidence 999998777766655 8999999999875 334445789999999988876544321110000
Q ss_pred cEEEccCCCCCCCCCccccCCCCCCEEEc-ccCCCccccChHHhhcccccceeecccccccccccCccccCccceEeccc
Q 036216 242 IELGLRSCDVGSRFPLWLYSQKDLQFLDL-FNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIA 320 (695)
Q Consensus 242 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l-~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~ 320 (695)
....+..+..+ .++.+++ ..+.+.+.+|. +..+++|+.+++++|.+.. ++.+..+++|++|++++
T Consensus 251 ----------~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~-l~~l~~~~~L~~L~l~~ 316 (606)
T 3vq2_A 251 ----------EPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIKY-LEDVPKHFKWQSLSIIR 316 (606)
T ss_dssp ----------CGGGGTTGGGS-EEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCCC-CCCCCTTCCCSEEEEES
T ss_pred ----------ChHHhhhhhhc-cHhheeccccccccccccc--cccCCCCCEEEecCccchh-hhhccccccCCEEEccc
Confidence 00000001111 2333333 33334333333 3444455555555554432 22444444555555555
Q ss_pred ccceeecCC-CCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCC--CCccccCCCCCCEEeCCCCccc
Q 036216 321 NNFSGSLPL-ISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGK--LPDCWMSYQNLMALDLSNNKFT 397 (695)
Q Consensus 321 n~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~ls~n~~~ 397 (695)
|.+ +.+|. .+++|+.|++++|...+.+ .+..+++|++|++++|.+++. .+..+..+++|++|++++|.+.
T Consensus 317 n~l-~~lp~~~l~~L~~L~l~~n~~~~~~------~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 389 (606)
T 3vq2_A 317 CQL-KQFPTLDLPFLKSLTLTMNKGSISF------KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI 389 (606)
T ss_dssp CCC-SSCCCCCCSSCCEEEEESCSSCEEC------CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE
T ss_pred ccC-cccccCCCCccceeeccCCcCccch------hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc
Confidence 554 22332 2345556666555433222 233577888888888887755 3677888899999999999988
Q ss_pred ccCCccccCCCCCcEEECcCCcceeeCC-ccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccc-cCCc
Q 036216 398 GNLPTSLGSLSSLVSLHLRKNRLSGTIP-ILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDG-PLPT 475 (695)
Q Consensus 398 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~ 475 (695)
+ +|..+..+++|++|++++|++.+..| ..+..+++|++|++++|.+.+..|..+. .+++|++|++++|++.+ .+|.
T Consensus 390 ~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~ 467 (606)
T 3vq2_A 390 I-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL-GLTSLNTLKMAGNSFKDNTLSN 467 (606)
T ss_dssp E-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTT-TCTTCCEEECTTCEEGGGEECS
T ss_pred c-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhc-CCCCCCEEECCCCcCCCcchHH
Confidence 5 55788889999999999999987776 6788899999999999998877777765 78999999999999987 4788
Q ss_pred cccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccc
Q 036216 476 ELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLV 555 (695)
Q Consensus 476 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 555 (695)
.+..+++|++|++++|++++..|..+..+++|
T Consensus 468 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L------------------------------------------------ 499 (606)
T 3vq2_A 468 VFANTTNLTFLDLSKCQLEQISWGVFDTLHRL------------------------------------------------ 499 (606)
T ss_dssp CCTTCTTCCEEECTTSCCCEECTTTTTTCTTC------------------------------------------------
T ss_pred hhccCCCCCEEECCCCcCCccChhhhcccccC------------------------------------------------
Confidence 89999999999999999998888888877766
Q ss_pred cEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcC-CCCEEECCCCcccccCC
Q 036216 556 RIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMR-SLESIDFSVNKFTGEIP 618 (695)
Q Consensus 556 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~Ls~n~l~~~~p 618 (695)
+.|++++|++++..|..|..+++|++|++++|+++ .+|..+..++ +|+.|++++|.+.+..+
T Consensus 500 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 500 QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp CEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred CEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 88999999999988999999999999999999999 6777799887 69999999999986444
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-51 Score=471.83 Aligned_cols=551 Identities=22% Similarity=0.219 Sum_probs=361.8
Q ss_pred cEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcc-cCCccCCCCCCCCEEeCC
Q 036216 6 VELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQG-PIPEGLQNLTSLKHLGLP 84 (695)
Q Consensus 6 ~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~ 84 (695)
+..+.++++++.+|. ..+++++|||++|.|+.. .|..|.++++|++|+|++|...+ +.|.+|.++++|++|+|+
T Consensus 7 ~~~dcs~~~L~~vP~----lp~~l~~LdLs~N~i~~i-~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ----VLNTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp EEEEESCCCSSCCCS----SCTTCCEEEEESCCCCEE-CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred eEEEccCCCCCCCCC----CCCCcCEEECCCCcCCcc-ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 468899999999986 457899999999999886 67889999999999999995544 448899999999999999
Q ss_pred CCCCCCCchhhhcCCCCCCEEEcccCcCCcccchh--hcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccC
Q 036216 85 FNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRS--MARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALAS 162 (695)
Q Consensus 85 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~ 162 (695)
+|.+++..|.+|+++++|++|++++|.+.+..|.. ++++++|++|++++|.+.+..+.. .++.+++ |++|++++
T Consensus 82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~---~~~~L~~-L~~L~Ls~ 157 (844)
T 3j0a_A 82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP---SFGKLNS-LKSIDFSS 157 (844)
T ss_dssp TCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCG---GGGTCSS-CCEEEEES
T ss_pred CCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccch---hHhhCCC-CCEEECCC
Confidence 99999888999999999999999999998766655 889999999999999886643210 2333333 44444444
Q ss_pred cccccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCC--
Q 036216 163 SSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQ-- 240 (695)
Q Consensus 163 n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-- 240 (695)
|.+.+..+..+..+ . .++|+.|++++|.+.+..+..+..+.+
T Consensus 158 N~i~~~~~~~l~~l-----------------------------------~-~~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 201 (844)
T 3j0a_A 158 NQIFLVCEHELEPL-----------------------------------Q-GKTLSFFSLAANSLYSRVSVDWGKCMNPF 201 (844)
T ss_dssp SCCCCCCSGGGHHH-----------------------------------H-HCSSCCCEECCSBSCCCCCCCCCSSSCTT
T ss_pred CcCCeeCHHHcccc-----------------------------------c-CCccceEECCCCccccccccchhhcCCcc
Confidence 44444444444433 0 044444455544444444433333332
Q ss_pred ----ccEEEccCCCCCCCCCccccCC---CCCCEEEcccCCCcc--------ccChHHhhc--ccccceeeccccccccc
Q 036216 241 ----LIELGLRSCDVGSRFPLWLYSQ---KDLQFLDLFNSGISG--------TFPNRLLKS--ASQLYLLDLGHNQIHGE 303 (695)
Q Consensus 241 ----L~~L~l~~~~~~~~~~~~l~~~---~~L~~L~l~~~~i~~--------~~~~~~~~~--l~~L~~L~l~~n~l~~~ 303 (695)
|+.|++++|.+.+..+..+... ..++.+.++.+.... ......+.. .++|+.|++++|.+.+.
T Consensus 202 ~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~ 281 (844)
T 3j0a_A 202 RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSL 281 (844)
T ss_dssp TTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEE
T ss_pred ccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCccccc
Confidence 5555555555554444443322 345555554222110 111111222 25677777777776655
Q ss_pred cc-CccccCccceEecccccceeecCCC---CCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCcc
Q 036216 304 LT-NLTKASQLSYLSLIANNFSGSLPLI---SSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDC 379 (695)
Q Consensus 304 ~~-~~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 379 (695)
.+ .+..+++|+.|++++|.+.+..+.. +++|+.|++++|.+++..+. .+..+++|+.|++++|.+.+..+..
T Consensus 282 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~N~i~~~~~~~ 357 (844)
T 3j0a_A 282 NSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSS----NFYGLPKVAYIDLQKNHIAIIQDQT 357 (844)
T ss_dssp CSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSC----SCSSCTTCCEEECCSCCCCCCCSSC
T ss_pred ChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHH----HhcCCCCCCEEECCCCCCCccChhh
Confidence 44 4555666777777777666655543 34666666666666544333 2334667777777777776666666
Q ss_pred ccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCC
Q 036216 380 WMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRM 459 (695)
Q Consensus 380 ~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 459 (695)
|..+++|++|++++|.+++ + ..+++|+.|++++|++. .+|.. ..+++.|++++|.+.+.-...+...+++|
T Consensus 358 ~~~l~~L~~L~Ls~N~l~~-i----~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L 428 (844)
T 3j0a_A 358 FKFLEKLQTLDLRDNALTT-I----HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHL 428 (844)
T ss_dssp SCSCCCCCEEEEETCCSCC-C----SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTC
T ss_pred hcCCCCCCEEECCCCCCCc-c----cCCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCcc
Confidence 7777777777777777663 2 22566777777777766 33332 45677777777776443222233356777
Q ss_pred cEEEcCCCcccccCCc-cccCCCCCCEEeCCCCcCcccC-----ChhhhhcccCcccCCCCCCcccccCCCCCCCCCCcc
Q 036216 460 VLLILRSNNFDGPLPT-ELCDLAFLQILDLADNNLSGTI-----PNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTV 533 (695)
Q Consensus 460 ~~L~l~~n~~~~~~~~-~l~~l~~L~~L~L~~n~l~~~~-----p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~ 533 (695)
+.|++++|++++..+. .+..+++|+.|++++|.+++.. +..|.
T Consensus 429 ~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~------------------------------- 477 (844)
T 3j0a_A 429 QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFE------------------------------- 477 (844)
T ss_dssp CEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSS-------------------------------
T ss_pred ceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhc-------------------------------
Confidence 7777777777654332 3455677777777777765221 22222
Q ss_pred ccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcc
Q 036216 534 TEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKF 613 (695)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l 613 (695)
.++.|+.|+|++|++++..|..|..+++|++|+|++|++++..|..+. ++|+.|+|++|++
T Consensus 478 -----------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l 538 (844)
T 3j0a_A 478 -----------------GLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQL 538 (844)
T ss_dssp -----------------CBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECC
T ss_pred -----------------CcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcC
Confidence 234458889999999988888899999999999999999977666665 8999999999999
Q ss_pred cccCCcCCcCCCCCCEEEcccCcCcccCCCCcccCccccccccCC-cccCCCCCCCCCC
Q 036216 614 TGEIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSFNASCFLGN-NLCGAPLPKNCTD 671 (695)
Q Consensus 614 ~~~~p~~l~~l~~L~~L~ls~N~l~~~iP~~~~~~~~~~~~~~~n-~l~~~~~~~~c~~ 671 (695)
++..|+.+. +|+.|++++|++.+..+-.. |..-...++ .++|.+....|..
T Consensus 539 ~~~~~~~~~---~L~~l~l~~Np~~C~c~~~~----f~~~~~~~~~~~~~~~~~~~C~~ 590 (844)
T 3j0a_A 539 LAPNPDVFV---SLSVLDITHNKFICECELST----FINWLNHTNVTIAGPPADIYCVY 590 (844)
T ss_dssp CCCCSCCCS---SCCEEEEEEECCCCSSSCCS----HHHHHHHTTTTTCCCGGGCCCSS
T ss_pred CCCChhHhC---CcCEEEecCCCcccccccHH----HHHHHHhcCcccccccccCccCC
Confidence 988887764 78899999999987665321 111111223 4566655556654
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=7.3e-50 Score=458.77 Aligned_cols=523 Identities=20% Similarity=0.196 Sum_probs=395.8
Q ss_pred CEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCCCCCc-hhhhcCCCCCCEEEcc
Q 036216 30 TTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSV-PKWFDRLTHLEHLSLS 108 (695)
Q Consensus 30 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~Ls 108 (695)
+..+.+++.++. +|. -.++|++|+|++|.+++..|..|.++++|++|++++|...+.+ |.+|+++++|++|+|+
T Consensus 7 ~~~dcs~~~L~~--vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 7 RIAFYRFCNLTQ--VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp EEEEESCCCSSC--CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred eEEEccCCCCCC--CCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 467888888887 676 4678999999999999888999999999999999999655444 7889999999999999
Q ss_pred cCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcccccccchhcCCCCCCCEEEccCCC
Q 036216 109 YNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNNS 188 (695)
Q Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~ 188 (695)
+|.+.+..|..|+++++|++|++++|.+.+..+. ...++++++|++|++++|.
T Consensus 82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~---------------------------~~~~~~L~~L~~L~Ls~N~ 134 (844)
T 3j0a_A 82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLK---------------------------DGYFRNLKALTRLDLSKNQ 134 (844)
T ss_dssp TCCCCEECTTSSCSCSSCCCEECTTCCCSSCCST---------------------------TCCCSSCSSCCEEEEESCC
T ss_pred CCcCcccCHhHccCCcccCEeeCcCCCCCccccc---------------------------CccccccCCCCEEECCCCc
Confidence 9999988899999999999999999887653322 1237788889999999888
Q ss_pred cCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCC--CCccEEEccCCCCCCCCCccccCCCC--
Q 036216 189 IVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPP--FQLIELGLRSCDVGSRFPLWLYSQKD-- 264 (695)
Q Consensus 189 i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~l~~~~~-- 264 (695)
+++ ..+...|+++++|+.|++++|.+.+..+..+..+ ++|+.|++++|.+.+..|..+..+++
T Consensus 135 l~~-------------~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 201 (844)
T 3j0a_A 135 IRS-------------LYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF 201 (844)
T ss_dssp CCC-------------CCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTT
T ss_pred ccc-------------cccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCcc
Confidence 762 2233468899999999999999888888888776 89999999999999888877776665
Q ss_pred ----CCEEEcccCCCccccChHHhhcc--cccceeeccccccccc---------cc-Cccc--cCccceEecccccceee
Q 036216 265 ----LQFLDLFNSGISGTFPNRLLKSA--SQLYLLDLGHNQIHGE---------LT-NLTK--ASQLSYLSLIANNFSGS 326 (695)
Q Consensus 265 ----L~~L~l~~~~i~~~~~~~~~~~l--~~L~~L~l~~n~l~~~---------~~-~~~~--~~~L~~L~l~~n~~~~~ 326 (695)
|+.|++++|.+.+.++..+.... .+++.+.++.+..... .. .+.. .++|++|++++|.+.+.
T Consensus 202 ~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~ 281 (844)
T 3j0a_A 202 RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSL 281 (844)
T ss_dssp TTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEE
T ss_pred ccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCccccc
Confidence 99999999999888877665433 5677787774433211 11 2222 25678888888877766
Q ss_pred cCCC---CCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCcc
Q 036216 327 LPLI---SSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTS 403 (695)
Q Consensus 327 ~~~~---~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~ 403 (695)
.+.. +++|+.|++++|.+++..+. .|..+++|+.|++++|.+++..|..|..+++|+.|++++|.+.+..+..
T Consensus 282 ~~~~~~~l~~L~~L~L~~n~i~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~ 357 (844)
T 3j0a_A 282 NSRVFETLKDLKVLNLAYNKINKIADE----AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQT 357 (844)
T ss_dssp CSCCSSSCCCCCEEEEESCCCCEECTT----TTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSC
T ss_pred ChhhhhcCCCCCEEECCCCcCCCCChH----HhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhh
Confidence 5544 35777778877777654443 3345777777888877777666777777777888888877777666667
Q ss_pred ccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccC-CccccCCCC
Q 036216 404 LGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPL-PTELCDLAF 482 (695)
Q Consensus 404 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~ 482 (695)
|..+++|++|++++|.+++. ..+++|+.|++++|.+. .+|. ...+++.|++++|++.+.. +..+..+++
T Consensus 358 ~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~----~~~~l~~L~ls~N~l~~l~~~~~~~~l~~ 427 (844)
T 3j0a_A 358 FKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPK----INLTANLIHLSENRLENLDILYFLLRVPH 427 (844)
T ss_dssp SCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCCC----CCTTCCEEECCSCCCCSSTTHHHHTTCTT
T ss_pred hcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-cccc----cccccceeecccCccccCchhhhhhcCCc
Confidence 77777788888877777632 22677777777777773 5554 3556777777777776532 223457777
Q ss_pred CCEEeCCCCcCcccCCh-hhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcC
Q 036216 483 LQILDLADNNLSGTIPN-CIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFS 561 (695)
Q Consensus 483 L~~L~L~~n~l~~~~p~-~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls 561 (695)
|++|++++|++++..+. .+.. .+.|+.|+++
T Consensus 428 L~~L~Ls~N~l~~~~~~~~~~~------------------------------------------------~~~L~~L~Ls 459 (844)
T 3j0a_A 428 LQILILNQNRFSSCSGDQTPSE------------------------------------------------NPSLEQLFLG 459 (844)
T ss_dssp CCEEEEESCCCCCCCSSSSSCS------------------------------------------------CTTCCBCEEE
T ss_pred cceeeCCCCccccccccccccc------------------------------------------------CCccccccCC
Confidence 88888888777643322 1111 2345889999
Q ss_pred Ccccc-----ccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccCc
Q 036216 562 KNLFS-----GTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNY 636 (695)
Q Consensus 562 ~n~l~-----~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~ 636 (695)
+|.++ +..+..|.++++|++|+|++|.+++..|..|+.+++|+.|+|++|++++..|..+. ++|+.|++++|+
T Consensus 460 ~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~ 537 (844)
T 3j0a_A 460 ENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQ 537 (844)
T ss_dssp SCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEEC
T ss_pred CCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCc
Confidence 99997 44456789999999999999999999999999999999999999999987777666 899999999999
Q ss_pred CcccCCCCcccCccccccccCC-cccCC
Q 036216 637 LTGKIPSSTQLQSFNASCFLGN-NLCGA 663 (695)
Q Consensus 637 l~~~iP~~~~~~~~~~~~~~~n-~l~~~ 663 (695)
+++.+|.. +..+....+.|| ..|..
T Consensus 538 l~~~~~~~--~~~L~~l~l~~Np~~C~c 563 (844)
T 3j0a_A 538 LLAPNPDV--FVSLSVLDITHNKFICEC 563 (844)
T ss_dssp CCCCCSCC--CSSCCEEEEEEECCCCSS
T ss_pred CCCCChhH--hCCcCEEEecCCCccccc
Confidence 99999975 446666666666 34533
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.3e-49 Score=436.39 Aligned_cols=500 Identities=20% Similarity=0.174 Sum_probs=296.5
Q ss_pred CCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeC
Q 036216 4 SLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGL 83 (695)
Q Consensus 4 ~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 83 (695)
++++|++++|.++.+++.+|.++++|++|++++|.+++. .++.|.++++|++|++++|.++...|.+|.++++|++|++
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCcc-CcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 456666666666666655666666666666666666553 3445556666666666666666555566666666666666
Q ss_pred CCCCCCCCchhhhcCCCCCCEEEcccCcCCc-ccchhhcCCCCCCEEEccCCcCccccchhhhhhhccccccc----ceE
Q 036216 84 PFNHFSSSVPKWFDRLTHLEHLSLSYNSLEG-RIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGL----ESL 158 (695)
Q Consensus 84 ~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L----~~L 158 (695)
++|.+++..+..|+++++|++|++++|.+.+ .+|..++++++|++|++++|++.+..+. .++.+.. + +.+
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~-L~~~~~~L 182 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT----DLRVLHQ-MPLLNLSL 182 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGG----GGHHHHT-CTTCCCEE
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHH----Hccchhc-cchhhhhc
Confidence 6666664444346666666666666666654 2456666666666666666666554444 2222222 3 556
Q ss_pred EccCcccccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCC
Q 036216 159 ALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPP 238 (695)
Q Consensus 159 ~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 238 (695)
++++|.+.+..+..+... +|++|++++|.... ..+ +..+.+++.++...+....+.. .
T Consensus 183 ~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~------------~~~-~~~~~~l~~l~~~~l~~~~~~~--------~ 240 (570)
T 2z63_A 183 DLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSL------------NVM-KTCIQGLAGLEVHRLVLGEFRN--------E 240 (570)
T ss_dssp ECTTCCCCEECTTTTTTC-EEEEEEEESCCSCT------------THH-HHHHHTTTTCEEEEEEEEECCC--------C
T ss_pred ccCCCCceecCHHHhccC-cceeEecccccccc------------cch-hhhhcCccccceeeeccccccC--------c
Confidence 666666666555555444 56666666553321 011 1244555555554443322110 0
Q ss_pred CCccEEEccCCCCCCCCCccccCCC--CCCEEEcccC-CCccccChHHhhcccccceeecccccccccccCccccCccce
Q 036216 239 FQLIELGLRSCDVGSRFPLWLYSQK--DLQFLDLFNS-GISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSY 315 (695)
Q Consensus 239 ~~L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~~-~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~ 315 (695)
..++. .....+..++ .++.++++++ .+.+.++. .+..+++|+.|++++|.+.+....+..+ +|++
T Consensus 241 ~~l~~----------~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~ 308 (570)
T 2z63_A 241 GNLEK----------FDKSALEGLCNLTIEEFRLAYLDYYLDDIID-LFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQH 308 (570)
T ss_dssp SSCEE----------CCTTTTGGGGGSEEEEEEEEETTEEESCSTT-TTGGGTTCSEEEEESCEECSCCBCCSCC-CCSE
T ss_pred hhhhh----------cchhhhccccccchhhhhhhcchhhhhhchh-hhcCcCcccEEEecCccchhhhhhhccC-CccE
Confidence 01110 0011112222 2456666666 44444443 3466788888888888777444344333 4555
Q ss_pred EecccccceeecCCCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCc
Q 036216 316 LSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNK 395 (695)
Q Consensus 316 L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~ 395 (695)
|++++|.+.. +| . ..+++|+.|++++|.+.+..+. ..+++|++|++++|.
T Consensus 309 L~l~~n~~~~-l~---------------------~------~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~ 358 (570)
T 2z63_A 309 LELVNCKFGQ-FP---------------------T------LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNG 358 (570)
T ss_dssp EEEESCBCSS-CC---------------------B------CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSC
T ss_pred EeeccCcccc-cC---------------------c------ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCc
Confidence 5544444331 11 0 0134445555555544433332 445566666666666
Q ss_pred ccccC--CccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccC
Q 036216 396 FTGNL--PTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPL 473 (695)
Q Consensus 396 ~~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 473 (695)
+++.. +..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+ .+..
T Consensus 359 l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l-------------------------~~~~ 412 (570)
T 2z63_A 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNL-------------------------KQMS 412 (570)
T ss_dssp CBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEE-------------------------ESCT
T ss_pred cCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCcc-------------------------cccc
Confidence 55332 34455555555555555555533332 44555555555555544 4333
Q ss_pred C-ccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhc
Q 036216 474 P-TELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEIL 552 (695)
Q Consensus 474 ~-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (695)
+ ..+..+++|++|++++|++.+..|..+.++++|
T Consensus 413 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--------------------------------------------- 447 (570)
T 2z63_A 413 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL--------------------------------------------- 447 (570)
T ss_dssp TSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC---------------------------------------------
T ss_pred chhhhhcCCCCCEEeCcCCcccccchhhhhcCCcC---------------------------------------------
Confidence 3 345566667777777777666666666555554
Q ss_pred ccccEEEcCCcccc-ccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEE
Q 036216 553 NLVRIIDFSKNLFS-GTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLN 631 (695)
Q Consensus 553 ~~l~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 631 (695)
+.|++++|.++ +.+|..+..+++|++|++++|++++..|..|+.+++|+.|++++|++++..|..+..+++|++|+
T Consensus 448 ---~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 524 (570)
T 2z63_A 448 ---EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIW 524 (570)
T ss_dssp ---CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred ---cEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEE
Confidence 66677777776 46788889999999999999999988899999999999999999999988888899999999999
Q ss_pred cccCcCcccCCCCccc
Q 036216 632 LSNNYLTGKIPSSTQL 647 (695)
Q Consensus 632 ls~N~l~~~iP~~~~~ 647 (695)
+++|++++.+|....+
T Consensus 525 l~~N~~~~~~~~~~~~ 540 (570)
T 2z63_A 525 LHTNPWDCSCPRIDYL 540 (570)
T ss_dssp CCSSCBCCCTTTTHHH
T ss_pred ecCCcccCCCcchHHH
Confidence 9999999999976444
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=9e-48 Score=422.61 Aligned_cols=507 Identities=19% Similarity=0.200 Sum_probs=368.3
Q ss_pred CCCCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEE
Q 036216 2 LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHL 81 (695)
Q Consensus 2 l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 81 (695)
|+...+.+++++.++.+|...+ ++|++|++++|.+++. .|..+.++++|++|++++|++++..|++|.++++|++|
T Consensus 4 C~~~~~c~~~~~~l~~ip~~~~---~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 79 (549)
T 2z81_A 4 CDASGVCDGRSRSFTSIPSGLT---AAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHL 79 (549)
T ss_dssp ECTTSEEECTTSCCSSCCSCCC---TTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCceEECCCCccccccccCC---CCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCCcCccChhhccccccCCEE
Confidence 3555668899999999998433 7899999999999885 67889999999999999999998888999999999999
Q ss_pred eCCCCCCCCCchhhhcCCCCCCEEEcccCcCCc-ccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEc
Q 036216 82 GLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEG-RIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLAL 160 (695)
Q Consensus 82 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L 160 (695)
++++|.+++..|..|+++++|++|++++|.+++ ..|..++++++|++|++++|.+.+.++.. .++.+.. |++|++
T Consensus 80 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~---~~~~l~~-L~~L~L 155 (549)
T 2z81_A 80 DLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI---DFAGLTS-LNELEI 155 (549)
T ss_dssp ECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT---TTTTCCE-EEEEEE
T ss_pred ECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHh---hhhcccc-cCeeec
Confidence 999999998888889999999999999999986 35678999999999999999854444321 4555666 999999
Q ss_pred cCcccccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCC
Q 036216 161 ASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQ 240 (695)
Q Consensus 161 ~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 240 (695)
++|.+.+..|..++.+++|++|++++|.+. .++...+..+++|+.|++++|.+.+.....
T Consensus 156 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~--------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~------ 215 (549)
T 2z81_A 156 KALSLRNYQSQSLKSIRDIHHLTLHLSESA--------------FLLEIFADILSSVRYLELRDTNLARFQFSP------ 215 (549)
T ss_dssp EETTCCEECTTTTTTCSEEEEEEEECSBST--------------THHHHHHHSTTTBSEEEEESCBCTTCCCCC------
T ss_pred cCCcccccChhhhhccccCceEecccCccc--------------ccchhhHhhcccccEEEccCCccccccccc------
Confidence 999999988999999999999999998874 556655677888888888888776421100
Q ss_pred ccEEEccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHh---hcccccceeecccccccccccCccccCccceEe
Q 036216 241 LIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLL---KSASQLYLLDLGHNQIHGELTNLTKASQLSYLS 317 (695)
Q Consensus 241 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ 317 (695)
......+++|+.|++++|.+.+..+..+. ..+++|+.+++++|.+.+... +...
T Consensus 216 ---------------~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~------- 272 (549)
T 2z81_A 216 ---------------LPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGD-FNPS------- 272 (549)
T ss_dssp ---------------CSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSC-CCCC-------
T ss_pred ---------------cchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccc-cccc-------
Confidence 01123456777777777777654444332 334566666666666553211 0000
Q ss_pred cccccceeecCCCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCccc
Q 036216 318 LIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFT 397 (695)
Q Consensus 318 l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~ 397 (695)
.......+++++.+++.++.+..... ....+..+...++|++|++++|.+.
T Consensus 273 ------~~~~~~~l~~L~~L~l~~~~i~~~~~-----------------------~~~l~~~~~~~~~L~~L~l~~n~l~ 323 (549)
T 2z81_A 273 ------ESDVVSELGKVETVTIRRLHIPQFYL-----------------------FYDLSTVYSLLEKVKRITVENSKVF 323 (549)
T ss_dssp ------TTTCCCCCTTCCEEEEESCBCSCGGG-----------------------SCCCCHHHHHSTTCCEEEEESSCCC
T ss_pred ------chhhhhhhcccccccccccccchhhh-----------------------cccchhhhhhcccceEEEeccCccc
Confidence 00011123445555555554332100 0011112233456666666666665
Q ss_pred ccCCccc-cCCCCCcEEECcCCcceeeCC---ccccCCCCCcEEEcCCCcccccCC-hhhhhcCCCCcEEEcCCCccccc
Q 036216 398 GNLPTSL-GSLSSLVSLHLRKNRLSGTIP---ILLKNCTSLVTLDVGENEVFGNIP-SWFGERFSRMVLLILRSNNFDGP 472 (695)
Q Consensus 398 ~~~~~~~-~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~ 472 (695)
.+|..+ ..+++|++|++++|++.+..| ..+..+++|++|++++|.+.+..+ ......+++|++|++++|+++ .
T Consensus 324 -~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ 401 (549)
T 2z81_A 324 -LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-P 401 (549)
T ss_dssp -CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-C
T ss_pred -cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-c
Confidence 445444 456777777777777665443 235667777777777777743221 122336888888888888887 5
Q ss_pred CCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhc
Q 036216 473 LPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEIL 552 (695)
Q Consensus 473 ~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (695)
+|..+..+++|++|++++|+++ .+|..+ .
T Consensus 402 lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~--------------------------------------------------~ 430 (549)
T 2z81_A 402 MPDSCQWPEKMRFLNLSSTGIR-VVKTCI--------------------------------------------------P 430 (549)
T ss_dssp CCSCCCCCTTCCEEECTTSCCS-CCCTTS--------------------------------------------------C
T ss_pred CChhhcccccccEEECCCCCcc-cccchh--------------------------------------------------c
Confidence 7778888899999999999887 333321 1
Q ss_pred ccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEc
Q 036216 553 NLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNL 632 (695)
Q Consensus 553 ~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l 632 (695)
+.|++||+++|++++.. ..+++|++|+|++|+++ .+|. .+.+++|+.|+|++|++++..|..+..+++|++|++
T Consensus 431 ~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l 504 (549)
T 2z81_A 431 QTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWL 504 (549)
T ss_dssp TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEEC
T ss_pred CCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEe
Confidence 23489999999998643 57899999999999999 7776 578999999999999999988888999999999999
Q ss_pred ccCcCcccCCCCccc
Q 036216 633 SNNYLTGKIPSSTQL 647 (695)
Q Consensus 633 s~N~l~~~iP~~~~~ 647 (695)
++|++.+.+|....+
T Consensus 505 ~~N~~~~~~~~~~~l 519 (549)
T 2z81_A 505 HTNPWDCSCPRIDYL 519 (549)
T ss_dssp CSSCBCCCHHHHHHH
T ss_pred cCCCccCCCccHHHH
Confidence 999999988854333
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.1e-47 Score=418.89 Aligned_cols=510 Identities=19% Similarity=0.190 Sum_probs=375.0
Q ss_pred CcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCC
Q 036216 5 LVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLP 84 (695)
Q Consensus 5 L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 84 (695)
.++++.++..++.+|.. + .+++++|++++|.+++. .+..|.++++|++|++++|++++..+.+|.++++|++|+++
T Consensus 9 ~~~~~c~~~~l~~ip~~-l--~~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 84 (570)
T 2z63_A 9 NITYQCMELNFYKIPDN-L--PFSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84 (570)
T ss_dssp TTEEECCSSCCSSCCSS-S--CSSCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CcEEEeCCCCccccCCC-c--cccccEEEccCCccCcc-ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCc
Confidence 45788888889988863 3 25799999999999875 56678899999999999999988888889999999999999
Q ss_pred CCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcc
Q 036216 85 FNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSS 164 (695)
Q Consensus 85 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~ 164 (695)
+|.+++..|.+|+++++|++|++++|.+++..+..++++++|++|++++|.+.+.
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~------------------------- 139 (570)
T 2z63_A 85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF------------------------- 139 (570)
T ss_dssp TCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCC-------------------------
T ss_pred CCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCcccee-------------------------
Confidence 9999877778899999999999999998866555788888888888888877541
Q ss_pred cccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCC----CEEEcccccceeecCCCCCCCCC
Q 036216 165 ISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKL----SVFLVGANKLTLKVKRDWIPPFQ 240 (695)
Q Consensus 165 ~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L----~~L~l~~n~l~~~~~~~~~~~~~ 240 (695)
.+|..++++++|++|++++|+++ .++...++.+++| +.+++++|.+....+..+... +
T Consensus 140 ---~lp~~~~~l~~L~~L~l~~n~l~--------------~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~ 201 (570)
T 2z63_A 140 ---KLPEYFSNLTNLEHLDLSSNKIQ--------------SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-R 201 (570)
T ss_dssp ---CCCGGGGGCTTCCEEECTTSCCC--------------EECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-E
T ss_pred ---cChhhhcccCCCCEEeCcCCccc--------------eecHHHccchhccchhhhhcccCCCCceecCHHHhccC-c
Confidence 12445666777777777777664 3444445555555 566666666665555444433 4
Q ss_pred ccEEEccCCCCC-CCCCccccCCCCCCEEEcccCCCccccChHHhhcccccceeecccccccccccCccccCccceEecc
Q 036216 241 LIELGLRSCDVG-SRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLI 319 (695)
Q Consensus 241 L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~ 319 (695)
|++|++++|... ..++..+..++.++...+....+.. ...++. +... .+..++.
T Consensus 202 L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~---------~~~l~~--~~~~-------~~~~l~~------- 256 (570)
T 2z63_A 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN---------EGNLEK--FDKS-------ALEGLCN------- 256 (570)
T ss_dssp EEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC---------CSSCEE--CCTT-------TTGGGGG-------
T ss_pred ceeEecccccccccchhhhhcCccccceeeeccccccC---------chhhhh--cchh-------hhccccc-------
Confidence 555555554322 1122333333333333322111100 000000 0000 0011110
Q ss_pred cccceeecCCCCCCCcEEEccCC-cCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCcccc
Q 036216 320 ANNFSGSLPLISSNLTVLELSGN-SLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTG 398 (695)
Q Consensus 320 ~n~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~ 398 (695)
-.++.++++++ .+.+..+. .+..+++|+.|++++|.+. .+|..+..+ +|++|++++|.+.
T Consensus 257 ------------l~l~~l~l~~~~~~~~~~~~----~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~- 317 (570)
T 2z63_A 257 ------------LTIEEFRLAYLDYYLDDIID----LFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG- 317 (570)
T ss_dssp ------------SEEEEEEEEETTEEESCSTT----TTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-
T ss_pred ------------cchhhhhhhcchhhhhhchh----hhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-
Confidence 01334444444 33333332 3345788999999999888 577778888 9999999999998
Q ss_pred cCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccC--ChhhhhcCCCCcEEEcCCCcccccCCcc
Q 036216 399 NLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNI--PSWFGERFSRMVLLILRSNNFDGPLPTE 476 (695)
Q Consensus 399 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 476 (695)
.+|. ..+++|++|++++|.+.+..+. ..+++|++|++++|.+.+.. |..+. .+++|++|++++|.+.+..+ .
T Consensus 318 ~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~-~ 391 (570)
T 2z63_A 318 QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDF-GTTSLKYLDLSFNGVITMSS-N 391 (570)
T ss_dssp SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHH-TCSCCCEEECCSCSEEEEEE-E
T ss_pred ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCcccccccccc-ccCccCEEECCCCccccccc-c
Confidence 5554 4678999999999998866654 67899999999999986543 55555 79999999999999986544 4
Q ss_pred ccCCCCCCEEeCCCCcCcccCC-hhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccc
Q 036216 477 LCDLAFLQILDLADNNLSGTIP-NCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLV 555 (695)
Q Consensus 477 l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 555 (695)
+..+++|++|++++|++.+..| ..+..+++|
T Consensus 392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L------------------------------------------------ 423 (570)
T 2z63_A 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL------------------------------------------------ 423 (570)
T ss_dssp EETCTTCCEEECTTSEEESCTTSCTTTTCTTC------------------------------------------------
T ss_pred ccccCCCCEEEccCCccccccchhhhhcCCCC------------------------------------------------
Confidence 9999999999999999986655 345555554
Q ss_pred cEEEcCCccccccCCccccCCCCCCEEeccCCccc-ccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEccc
Q 036216 556 RIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFT-GRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSN 634 (695)
Q Consensus 556 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~ 634 (695)
++|++++|.+.+..|..+..+++|++|++++|.++ +.+|..++.+++|+.|++++|++++..|..+..+++|++|++++
T Consensus 424 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 503 (570)
T 2z63_A 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503 (570)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCC
Confidence 89999999999999999999999999999999998 57899999999999999999999998899999999999999999
Q ss_pred CcCcccCCCC-cccCccccccccCCc
Q 036216 635 NYLTGKIPSS-TQLQSFNASCFLGNN 659 (695)
Q Consensus 635 N~l~~~iP~~-~~~~~~~~~~~~~n~ 659 (695)
|++++.+|.. ..+.+++...+.+|.
T Consensus 504 n~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 504 NQLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcCCCCCHHHhhcccCCcEEEecCCc
Confidence 9999988764 567777777777764
No 14
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.9e-46 Score=417.90 Aligned_cols=534 Identities=20% Similarity=0.180 Sum_probs=349.7
Q ss_pred EEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCC
Q 036216 7 ELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFN 86 (695)
Q Consensus 7 ~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 86 (695)
+.+.++.+++.||.. + .+++++|||++|.|+.+ .+.+|.++++|++|+|++|+|+++.+++|.++++|++|+|++|
T Consensus 35 ~~~c~~~~l~~vP~~-l--p~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N 110 (635)
T 4g8a_A 35 TYQCMELNFYKIPDN-L--PFSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 110 (635)
T ss_dssp EEECTTSCCSSCCSS-S--CTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred EEECCCCCcCccCCC-C--CcCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC
Confidence 456666667777652 2 24677777777777764 4456777777777777777777666677777777777777777
Q ss_pred CCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccc-cchhhhhhhcccccccceEEccCccc
Q 036216 87 HFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQE-ISEILEIFSGCVSNGLESLALASSSI 165 (695)
Q Consensus 87 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~~~~~~L~~L~L~~n~~ 165 (695)
++++..+.+|.++++|++|++++|.+++..+..|+++++|++|++++|.+.+. .+. .++.+.. |++|++++|.+
T Consensus 111 ~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~----~~~~l~~-L~~L~L~~N~l 185 (635)
T 4g8a_A 111 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE----YFSNLTN-LEHLDLSSNKI 185 (635)
T ss_dssp CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG----GGGGCTT-CCEEECCSSCC
T ss_pred cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCch----hhccchh-hhhhcccCccc
Confidence 77766666677777777777777777765556677777777777777777543 233 4444555 77777777777
Q ss_pred ccccchhcCCCCCC----CEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeec-CCCCCCCCC
Q 036216 166 SGHLTDQLGQFKNL----DSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKV-KRDWIPPFQ 240 (695)
Q Consensus 166 ~~~~~~~l~~l~~L----~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~ 240 (695)
++..+..+..+.++ ..++++.|.+. .++...+. ...++.+++.+|...... ...+..+..
T Consensus 186 ~~~~~~~l~~L~~l~~~~~~~~ls~n~l~--------------~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~ 250 (635)
T 4g8a_A 186 QSIYCTDLRVLHQMPLLNLSLDLSLNPMN--------------FIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAG 250 (635)
T ss_dssp CEECGGGGHHHHTCTTCCCEEECTTCCCC--------------EECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTT
T ss_pred cccccccccchhhhhhhhhhhhcccCccc--------------ccCccccc-chhhhhhhhhcccccccccchhhcCCcc
Confidence 77666666554433 35667777664 22222221 122333444433222110 011112222
Q ss_pred ccEEEccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHhhcccccceeeccccccc----ccccCccccCccceE
Q 036216 241 LIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIH----GELTNLTKASQLSYL 316 (695)
Q Consensus 241 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~----~~~~~~~~~~~L~~L 316 (695)
++...+......... .+. ......+.....+...++..+... +....+.....++.+
T Consensus 251 l~~~~l~~~~~~~~~------------------~l~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l 311 (635)
T 4g8a_A 251 LEVHRLVLGEFRNEG------------------NLE-KFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSF 311 (635)
T ss_dssp CEEEEEEEECCTTSC------------------CCS-CCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEE
T ss_pred ccccccccccccccc------------------ccc-cccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccc
Confidence 222222111100000 000 000011112222332222222111 112223333445555
Q ss_pred ecccccceeecCC-CCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCc
Q 036216 317 SLIANNFSGSLPL-ISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNK 395 (695)
Q Consensus 317 ~l~~n~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~ 395 (695)
.+..+.+....+. ...+++.|++.+|.+.+.... .+..|+.+.+..|...... ....+++|+.+++++|.
T Consensus 312 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-------~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~ 382 (635)
T 4g8a_A 312 SLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL-------KLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNG 382 (635)
T ss_dssp EEESCEEEECGGGGSCCCCSEEEEESCEESSCCCC-------BCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSC
T ss_pred cccccccccccccccchhhhhhhcccccccCcCcc-------cchhhhhcccccccCCCCc--ccccccccccchhhccc
Confidence 5555544433221 124566666666655432221 2456677777777655332 34467889999999888
Q ss_pred ccc--cCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccC
Q 036216 396 FTG--NLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPL 473 (695)
Q Consensus 396 ~~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 473 (695)
+.. ..+..+..+.+|+.+++..+.... .+..+..+++|+.+++.++......+...+..+++++.++++.|.+.+..
T Consensus 383 l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~ 461 (635)
T 4g8a_A 383 LSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 461 (635)
T ss_dssp CBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECC
T ss_pred cccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccccccccccccccccccccc
Confidence 753 455566778899999999998874 45567889999999999988877777666668899999999999999888
Q ss_pred CccccCCCCCCEEeCCCCcCc-ccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhc
Q 036216 474 PTELCDLAFLQILDLADNNLS-GTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEIL 552 (695)
Q Consensus 474 ~~~l~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (695)
+..+..++.|+.|++++|++. +..|..|..+++|
T Consensus 462 ~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L--------------------------------------------- 496 (635)
T 4g8a_A 462 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL--------------------------------------------- 496 (635)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC---------------------------------------------
T ss_pred ccccccchhhhhhhhhhcccccccCchhhhhcccc---------------------------------------------
Confidence 888999999999999999854 3466667666655
Q ss_pred ccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCC-CCCCEEE
Q 036216 553 NLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSL-TFLNHLN 631 (695)
Q Consensus 553 ~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~ 631 (695)
++|||++|++++..|..|.++++|++|+|++|++++..|..|+.+++|++|+|++|++++..|+.+..+ ++|++|+
T Consensus 497 ---~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~ 573 (635)
T 4g8a_A 497 ---TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 573 (635)
T ss_dssp ---CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEE
T ss_pred ---CEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEE
Confidence 889999999999999999999999999999999998889999999999999999999999999999988 6899999
Q ss_pred cccCcCcccC
Q 036216 632 LSNNYLTGKI 641 (695)
Q Consensus 632 ls~N~l~~~i 641 (695)
+++|++...-
T Consensus 574 L~~Np~~C~C 583 (635)
T 4g8a_A 574 LTQNDFACTC 583 (635)
T ss_dssp CTTCCBCCSG
T ss_pred eeCCCCcccC
Confidence 9999998543
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.4e-46 Score=404.71 Aligned_cols=459 Identities=19% Similarity=0.214 Sum_probs=307.5
Q ss_pred CEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEEccc
Q 036216 30 TTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSY 109 (695)
Q Consensus 30 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 109 (695)
++||+++|.++. +|..+. ++|++|++++|.+++..|..|.++++|++|++++|++++..|..|+++++|++|++++
T Consensus 3 ~~l~ls~n~l~~--ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLIH--VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCSS--CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCccc--cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 456666666664 555443 5666666666666655555666666666666666666655566666666666666666
Q ss_pred CcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcccccccchhcCCCCCCCEEEccCCCc
Q 036216 110 NSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNNSI 189 (695)
Q Consensus 110 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~i 189 (695)
|.++ .+|.. .+++|++|++++|++.+. ..|..++++++|++|++++|++
T Consensus 79 N~l~-~lp~~--~l~~L~~L~L~~N~l~~~----------------------------~~p~~~~~l~~L~~L~L~~n~l 127 (520)
T 2z7x_B 79 NKLV-KISCH--PTVNLKHLDLSFNAFDAL----------------------------PICKEFGNMSQLKFLGLSTTHL 127 (520)
T ss_dssp SCCC-EEECC--CCCCCSEEECCSSCCSSC----------------------------CCCGGGGGCTTCCEEEEEESSC
T ss_pred Ccee-ecCcc--ccCCccEEeccCCccccc----------------------------cchhhhccCCcceEEEecCccc
Confidence 6665 34433 455555555555544321 2456788888899999888877
Q ss_pred CCCceEEeeccccccccChhhhhCCCCC--CEEEcccccc--eeecCCCCCCCCCccEEEccCCCCCCCCCccccCCC-C
Q 036216 190 VGPRVLQLYLNKLHGTLSEIHFANLTKL--SVFLVGANKL--TLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQK-D 264 (695)
Q Consensus 190 ~~~~~~~l~~~~~~~~l~~~~~~~l~~L--~~L~l~~n~l--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~ 264 (695)
++ ..+..+++| +.|++++|.+ .+..+.. +..+. .
T Consensus 128 ~~-----------------~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~------------------------l~~l~~~ 166 (520)
T 2z7x_B 128 EK-----------------SSVLPIAHLNISKVLLVLGETYGEKEDPEG------------------------LQDFNTE 166 (520)
T ss_dssp CG-----------------GGGGGGTTSCEEEEEEEECTTTTSSCCTTT------------------------TTTCCEE
T ss_pred ch-----------------hhccccccceeeEEEeeccccccccccccc------------------------ccccccc
Confidence 51 245566666 7777777766 4333333 33322 1
Q ss_pred CCEEEcccCCCccccChHHhhcccccceeeccccc-------ccccccCccccCccceEecccccceeecCCCCCCCcEE
Q 036216 265 LQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQ-------IHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVL 337 (695)
Q Consensus 265 L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~-------l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L 337 (695)
...+++++|.+.+.++...+..+++|+.+++++|. +.+.++.+..+++|+.|++++|.+.+..
T Consensus 167 ~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~---------- 236 (520)
T 2z7x_B 167 SLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNS---------- 236 (520)
T ss_dssp EEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHH----------
T ss_pred eEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHH----------
Confidence 22445556666556666556667777777777775 5555556666666666666666554321
Q ss_pred EccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccc-----cCCCCCCEEeCCCCcccccCC-ccccCC---C
Q 036216 338 ELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCW-----MSYQNLMALDLSNNKFTGNLP-TSLGSL---S 408 (695)
Q Consensus 338 ~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-----~~~~~L~~L~ls~n~~~~~~~-~~~~~l---~ 408 (695)
+....... ..++|+.|++++|.+.+.+|..+ ..+++|+.+++++|.+ .+| ..+..+ .
T Consensus 237 -----------~~~~~~~~-~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~ 302 (520)
T 2z7x_B 237 -----------FIRILQLV-WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNM 302 (520)
T ss_dssp -----------HHHHHHHH-HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTC
T ss_pred -----------HHHHHHHh-hhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccC
Confidence 11111111 13467777777777776666666 6777777777777777 344 333333 5
Q ss_pred CCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccc--cCCccccCCCCCCEE
Q 036216 409 SLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDG--PLPTELCDLAFLQIL 486 (695)
Q Consensus 409 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L 486 (695)
+|+.|++++|.+.... .+..+++|++|++++|.+.+.+|..+. .+++|++|++++|++++ .+|..+..+++|++|
T Consensus 303 ~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L 379 (520)
T 2z7x_B 303 NIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCG-HLTELETLILQMNQLKELSKIAEMTTQMKSLQQL 379 (520)
T ss_dssp CCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCC-CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEE
T ss_pred ceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhc-cCCCCCEEEccCCccCccccchHHHhhCCCCCEE
Confidence 6788888888765322 125677888888888888776776664 67888888888888876 455678888888888
Q ss_pred eCCCCcCcccCChh-hhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccc
Q 036216 487 DLADNNLSGTIPNC-IHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLF 565 (695)
Q Consensus 487 ~L~~n~l~~~~p~~-~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l 565 (695)
++++|++++.+|.. +..+++ |+.|++++|++
T Consensus 380 ~Ls~N~l~~~l~~~~~~~l~~------------------------------------------------L~~L~Ls~N~l 411 (520)
T 2z7x_B 380 DISQNSVSYDEKKGDCSWTKS------------------------------------------------LLSLNMSSNIL 411 (520)
T ss_dssp ECCSSCCBCCGGGCSCCCCTT------------------------------------------------CCEEECCSSCC
T ss_pred ECCCCcCCcccccchhccCcc------------------------------------------------CCEEECcCCCC
Confidence 88888888645543 444433 37888999998
Q ss_pred cccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcC-CcCCCCCCEEEcccCcCcccCCC
Q 036216 566 SGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQS-MSSLTFLNHLNLSNNYLTGKIPS 643 (695)
Q Consensus 566 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~ls~N~l~~~iP~ 643 (695)
++..|..+. ++|++|++++|+++ .+|..+..+++|+.|++++|+++ .+|.. +..+++|++|++++|++++..|.
T Consensus 412 ~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 412 TDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp CGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred Ccchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCCc
Confidence 887777665 79999999999999 88888889999999999999999 56665 89999999999999999976653
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.5e-45 Score=404.90 Aligned_cols=487 Identities=20% Similarity=0.219 Sum_probs=356.3
Q ss_pred CCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEE
Q 036216 27 STLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLS 106 (695)
Q Consensus 27 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 106 (695)
+...+.|.+++.++. +|..+. ++|++|++++|.+++..|..|.++++|++|++++|++++..|.+|+++++|++|+
T Consensus 5 ~~~~~c~~~~~~l~~--ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 80 (549)
T 2z81_A 5 DASGVCDGRSRSFTS--IPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 80 (549)
T ss_dssp CTTSEEECTTSCCSS--CCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCceEECCCCcccc--ccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEE
Confidence 334456888888887 676553 7899999999999888888899999999999999999887778899999999999
Q ss_pred cccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcccccccchhcCCCCCCCEEEccC
Q 036216 107 LSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSN 186 (695)
Q Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~ 186 (695)
+++|.+++..+..|+++++|++|++++|++.+.. .+..++++++|++|++++
T Consensus 81 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~----------------------------~~~~~~~l~~L~~L~L~~ 132 (549)
T 2z81_A 81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLG----------------------------VTSLFPNLTNLQTLRIGN 132 (549)
T ss_dssp CTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSC----------------------------SSCSCTTCTTCCEEEEEE
T ss_pred CCCCccCccCHHHhccCCCCcEEECCCCcccccc----------------------------hhhhhhccCCccEEECCC
Confidence 9999988777777888888888888888775310 234567788888888888
Q ss_pred CCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCccEEEccCCCCCCCCCccccCCCCCC
Q 036216 187 NSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQ 266 (695)
Q Consensus 187 n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 266 (695)
|.+. +.++...|.++++|+.|++++|.+.+. .|..+..+++|+
T Consensus 133 n~~~-------------~~~~~~~~~~l~~L~~L~L~~n~l~~~------------------------~~~~l~~l~~L~ 175 (549)
T 2z81_A 133 VETF-------------SEIRRIDFAGLTSLNELEIKALSLRNY------------------------QSQSLKSIRDIH 175 (549)
T ss_dssp SSSC-------------CEECTTTTTTCCEEEEEEEEETTCCEE------------------------CTTTTTTCSEEE
T ss_pred Cccc-------------cccCHhhhhcccccCeeeccCCccccc------------------------ChhhhhccccCc
Confidence 7632 245544566666666666666655544 445555566666
Q ss_pred EEEcccCCCccccChHHhhcccccceeecccccccccccCccccCccceEecccccceeecCCCCCCCcEEEccCCcCCC
Q 036216 267 FLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSG 346 (695)
Q Consensus 267 ~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~ 346 (695)
+|+++.|.+. .+|..++..+++|+.|++++|.+.+...... ......++|+.|++++|.+++
T Consensus 176 ~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----------------~~~~~~~~L~~L~l~~n~l~~ 237 (549)
T 2z81_A 176 HLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPL-----------------PVDEVSSPMKKLAFRGSVLTD 237 (549)
T ss_dssp EEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCC-----------------SSCCCCCCCCEEEEESCEEEH
T ss_pred eEecccCccc-ccchhhHhhcccccEEEccCCcccccccccc-----------------chhhhhhcccceeccccccch
Confidence 6666666654 5666666667788888888887765321000 001113445555555555555
Q ss_pred ccchhhhhhhhhccccceeecccccccCCC------CccccCCCCCCEEeCCCCccccc-----CCccccCCCCCcEEEC
Q 036216 347 PIFHFLCYTINETMKLKFLFLDRNILQGKL------PDCWMSYQNLMALDLSNNKFTGN-----LPTSLGSLSSLVSLHL 415 (695)
Q Consensus 347 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~------~~~~~~~~~L~~L~ls~n~~~~~-----~~~~~~~l~~L~~L~l 415 (695)
..+..+...+..+++|+.+++++|.+.+.. ...+..+++++.|++.++.+... .+..+...++|++|++
T Consensus 238 ~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l 317 (549)
T 2z81_A 238 ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITV 317 (549)
T ss_dssp HHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEE
T ss_pred hHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEe
Confidence 444555555556677777777777765431 12345678889999888876532 1222344578999999
Q ss_pred cCCcceeeCCccc-cCCCCCcEEEcCCCcccccCChh--hhhcCCCCcEEEcCCCcccccCC--ccccCCCCCCEEeCCC
Q 036216 416 RKNRLSGTIPILL-KNCTSLVTLDVGENEVFGNIPSW--FGERFSRMVLLILRSNNFDGPLP--TELCDLAFLQILDLAD 490 (695)
Q Consensus 416 ~~n~l~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~--~~l~~l~~L~~L~L~~ 490 (695)
++|++. .+|..+ ..+++|++|++++|.+.+.+|.. ....+++|++|++++|++++..+ ..+..+++|++|++++
T Consensus 318 ~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~ 396 (549)
T 2z81_A 318 ENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISR 396 (549)
T ss_dssp ESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTT
T ss_pred ccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCC
Confidence 999987 566655 57999999999999998766543 12368999999999999986432 4588899999999999
Q ss_pred CcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCC
Q 036216 491 NNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLP 570 (695)
Q Consensus 491 n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p 570 (695)
|+++ .+|..+..+++| ++|++++|+++ .+|
T Consensus 397 N~l~-~lp~~~~~~~~L------------------------------------------------~~L~Ls~N~l~-~l~ 426 (549)
T 2z81_A 397 NTFH-PMPDSCQWPEKM------------------------------------------------RFLNLSSTGIR-VVK 426 (549)
T ss_dssp CCCC-CCCSCCCCCTTC------------------------------------------------CEEECTTSCCS-CCC
T ss_pred CCCc-cCChhhcccccc------------------------------------------------cEEECCCCCcc-ccc
Confidence 9998 677666555544 89999999998 445
Q ss_pred ccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccCcCcccCCCC-cccCc
Q 036216 571 MGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSS-TQLQS 649 (695)
Q Consensus 571 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~iP~~-~~~~~ 649 (695)
..+ .++|++|++++|++++.+ +.+++|+.|++++|+++ .+|. ...+++|++|++++|++++.+|.. ..+..
T Consensus 427 ~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 498 (549)
T 2z81_A 427 TCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTS 498 (549)
T ss_dssp TTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTT
T ss_pred chh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcc
Confidence 443 268999999999999542 57899999999999999 6786 467999999999999999988874 67778
Q ss_pred cccccccCCc
Q 036216 650 FNASCFLGNN 659 (695)
Q Consensus 650 ~~~~~~~~n~ 659 (695)
++...+.+|.
T Consensus 499 L~~L~l~~N~ 508 (549)
T 2z81_A 499 LQKIWLHTNP 508 (549)
T ss_dssp CCEEECCSSC
T ss_pred cCEEEecCCC
Confidence 8888887773
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1e-45 Score=410.11 Aligned_cols=351 Identities=19% Similarity=0.303 Sum_probs=263.0
Q ss_pred cChhhhhCCCCCCEEEcccccceee-----------------cCCCCC--CCCCccEEEccCCCCCCCCCccccCCCCCC
Q 036216 206 LSEIHFANLTKLSVFLVGANKLTLK-----------------VKRDWI--PPFQLIELGLRSCDVGSRFPLWLYSQKDLQ 266 (695)
Q Consensus 206 l~~~~~~~l~~L~~L~l~~n~l~~~-----------------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 266 (695)
+|. .++++++|++|++++|.+++. .+..+. .+++|++|++++|.+.+.+|..+..+++|+
T Consensus 198 ip~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 198 VSK-AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp ECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred CCH-HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 443 344555555555555555443 666777 788888888888888888888888899999
Q ss_pred EEEcccCC-Ccc-ccChHHhh-----cccccceeeccccccccccc--CccccCccceEecccccceeecCCCCCCCcEE
Q 036216 267 FLDLFNSG-ISG-TFPNRLLK-----SASQLYLLDLGHNQIHGELT--NLTKASQLSYLSLIANNFSGSLPLISSNLTVL 337 (695)
Q Consensus 267 ~L~l~~~~-i~~-~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L 337 (695)
+|++++|. +++ .+|..+.. .+++|++|++++|.+...+. .+..+++|++|++++|.+.|.+| .+
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~------ 349 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AF------ 349 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CC------
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hh------
Confidence 99999998 887 78876643 24889999999999984444 47777788888877777776555 21
Q ss_pred EccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCC-CCEEeCCCCcccccCCccccCCC--CCcEEE
Q 036216 338 ELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQN-LMALDLSNNKFTGNLPTSLGSLS--SLVSLH 414 (695)
Q Consensus 338 ~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-L~~L~ls~n~~~~~~~~~~~~l~--~L~~L~ 414 (695)
..+++|+.|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+..++ +|++|+
T Consensus 350 -------------------~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~ 408 (636)
T 4eco_A 350 -------------------GSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAID 408 (636)
T ss_dssp -------------------EEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEE
T ss_pred -------------------CCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEE
Confidence 13556666667776666 56666777777 777777777777 5666665544 777888
Q ss_pred CcCCcceeeCCcccc-------CCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccc-cC-------
Q 036216 415 LRKNRLSGTIPILLK-------NCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTEL-CD------- 479 (695)
Q Consensus 415 l~~n~l~~~~~~~~~-------~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l-~~------- 479 (695)
+++|.+.+..|..+. .+++|++|++++|.+. .+|..++..+++|+.|++++|+++ .+|..+ ..
T Consensus 409 Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~ 486 (636)
T 4eco_A 409 FSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKN 486 (636)
T ss_dssp CCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTT
T ss_pred CcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccc
Confidence 888877777776666 6678888888888874 677766656788888888888887 444433 22
Q ss_pred CCCCCEEeCCCCcCcccCChhhh--hcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccE
Q 036216 480 LAFLQILDLADNNLSGTIPNCIH--NLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRI 557 (695)
Q Consensus 480 l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 557 (695)
+++|++|++++|+++ .+|..+. .+++| +.
T Consensus 487 l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L------------------------------------------------~~ 517 (636)
T 4eco_A 487 TYLLTSIDLRFNKLT-KLSDDFRATTLPYL------------------------------------------------VG 517 (636)
T ss_dssp GGGCCEEECCSSCCC-BCCGGGSTTTCTTC------------------------------------------------CE
T ss_pred cCCccEEECcCCcCC-ccChhhhhccCCCc------------------------------------------------CE
Confidence 238899999999888 6777665 55555 78
Q ss_pred EEcCCccccccCCccccCCCCCCEEec------cCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEE
Q 036216 558 IDFSKNLFSGTLPMGLTNLKAVQSLNL------SYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLN 631 (695)
Q Consensus 558 L~Ls~n~l~~~~p~~l~~l~~L~~L~L------s~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 631 (695)
|++++|++++ +|..+..+++|++|+| ++|++.+.+|..++.+++|+.|+|++|++ +.+|..+. ++|++|+
T Consensus 518 L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~ 593 (636)
T 4eco_A 518 IDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLD 593 (636)
T ss_dssp EECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEE
T ss_pred EECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEE
Confidence 8899999986 8888888999999999 56788889999999999999999999999 58888876 7999999
Q ss_pred cccCcCccc
Q 036216 632 LSNNYLTGK 640 (695)
Q Consensus 632 ls~N~l~~~ 640 (695)
+++|++...
T Consensus 594 Ls~N~l~~~ 602 (636)
T 4eco_A 594 IKDNPNISI 602 (636)
T ss_dssp CCSCTTCEE
T ss_pred CcCCCCccc
Confidence 999988743
No 18
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.4e-43 Score=393.97 Aligned_cols=524 Identities=19% Similarity=0.182 Sum_probs=372.9
Q ss_pred CEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEEccc
Q 036216 30 TTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSY 109 (695)
Q Consensus 30 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 109 (695)
++.+=++-.++. +|..+- +++++|+|++|+|+++.+.+|.++++|++|+|++|.++++.|.+|.++++|++|+|++
T Consensus 34 ~~~~c~~~~l~~--vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~ 109 (635)
T 4g8a_A 34 ITYQCMELNFYK--IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 109 (635)
T ss_dssp TEEECTTSCCSS--CCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CEEECCCCCcCc--cCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccC
Confidence 455656666776 776442 4799999999999988889999999999999999999988888999999999999999
Q ss_pred CcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcccccc-cchhcCCCCCCCEEEccCCC
Q 036216 110 NSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGH-LTDQLGQFKNLDSLDLSNNS 188 (695)
Q Consensus 110 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~L~~n~ 188 (695)
|++++..+..|.++++|++|++++|++++..+. .++.+.. |++|++++|.+.+. .|..++.+++|++|++++|+
T Consensus 110 N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~----~~~~L~~-L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 110 NPIQSLALGAFSGLSSLQKLVAVETNLASLENF----PIGHLKT-LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp CCCCEECGGGGTTCTTCCEEECTTSCCCCSTTC----CCTTCTT-CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred CcCCCCCHHHhcCCCCCCEEECCCCcCCCCChh----hhhcCcc-cCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence 999977778899999999999999998765443 3344444 66666666665543 34555556666666666665
Q ss_pred cCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCccEEEccCCCCCCCCCccccCCCCCCEE
Q 036216 189 IVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFL 268 (695)
Q Consensus 189 i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 268 (695)
++ .++...|..+.+++. ....++++.+.+....+..+ ....++.+
T Consensus 185 l~--------------~~~~~~l~~L~~l~~--------------------~~~~~~ls~n~l~~i~~~~~-~~~~~~~l 229 (635)
T 4g8a_A 185 IQ--------------SIYCTDLRVLHQMPL--------------------LNLSLDLSLNPMNFIQPGAF-KEIRLHKL 229 (635)
T ss_dssp CC--------------EECGGGGHHHHTCTT--------------------CCCEEECTTCCCCEECTTTT-TTCEEEEE
T ss_pred cc--------------ccccccccchhhhhh--------------------hhhhhhcccCcccccCcccc-cchhhhhh
Confidence 54 222223332222210 12234444444443333222 22345566
Q ss_pred EcccCCCccccChHHhhcccccceeecccccccc-------cccCccccCccceEecccccce---eecC---CCCCCCc
Q 036216 269 DLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHG-------ELTNLTKASQLSYLSLIANNFS---GSLP---LISSNLT 335 (695)
Q Consensus 269 ~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~-------~~~~~~~~~~L~~L~l~~n~~~---~~~~---~~~~~L~ 335 (695)
++.+|.....++...+..+..++...+..+.... ....+.....+....+..+... .... ....+++
T Consensus 230 ~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 309 (635)
T 4g8a_A 230 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVS 309 (635)
T ss_dssp EEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCS
T ss_pred hhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccc
Confidence 6766665555555556666666666654433221 1112333344444444433221 1111 1245788
Q ss_pred EEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEEC
Q 036216 336 VLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHL 415 (695)
Q Consensus 336 ~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l 415 (695)
.+++.++.+.... .+.....++.|++.+|.+....+ ..++.|+.++++.|..... .....+++|+.+++
T Consensus 310 ~l~~~~~~~~~~~------~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~l 378 (635)
T 4g8a_A 310 SFSLVSVTIERVK------DFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDL 378 (635)
T ss_dssp EEEEESCEEEECG------GGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEEC
T ss_pred ccccccccccccc------ccccchhhhhhhcccccccCcCc---ccchhhhhcccccccCCCC--cccccccccccchh
Confidence 8888887765322 12336688899999988875443 2467888899988887643 23457889999999
Q ss_pred cCCcce--eeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCC-ccccCCCCCCEEeCCCCc
Q 036216 416 RKNRLS--GTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLP-TELCDLAFLQILDLADNN 492 (695)
Q Consensus 416 ~~n~l~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~L~~n~ 492 (695)
++|.+. +..+..+..+.+|+.+++..|..... +..+. .+++|+.+++.++......+ ..+..+++++.+++++|.
T Consensus 379 s~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~~~-~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~ 456 (635)
T 4g8a_A 379 SRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM-SSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 456 (635)
T ss_dssp CSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE-CSCCT-TCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSC
T ss_pred hccccccccccccchhhhhhhhhhhccccccccc-ccccc-ccccccchhhhhccccccccccccccccccccccccccc
Confidence 999875 34566677888999999999887443 33333 68899999999887765543 457888999999999999
Q ss_pred CcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCcccc-ccCCc
Q 036216 493 LSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFS-GTLPM 571 (695)
Q Consensus 493 l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~-~~~p~ 571 (695)
+.+..|..+..++.+ +.|++++|++. +..|.
T Consensus 457 l~~~~~~~~~~~~~L------------------------------------------------~~L~Ls~N~~~~~~~~~ 488 (635)
T 4g8a_A 457 TRVAFNGIFNGLSSL------------------------------------------------EVLKMAGNSFQENFLPD 488 (635)
T ss_dssp CEECCTTTTTTCTTC------------------------------------------------CEEECTTCEEGGGEECS
T ss_pred cccccccccccchhh------------------------------------------------hhhhhhhcccccccCch
Confidence 987777777666655 78999999854 46788
Q ss_pred cccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccCcCcccCCCC-ccc-Cc
Q 036216 572 GLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSS-TQL-QS 649 (695)
Q Consensus 572 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~iP~~-~~~-~~ 649 (695)
.|..+++|++|+|++|++++..|..|+++++|++|+|++|++++..|..|..+++|++||+++|++++.+|.. ..+ .+
T Consensus 489 ~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~ 568 (635)
T 4g8a_A 489 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS 568 (635)
T ss_dssp CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTT
T ss_pred hhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCc
Confidence 9999999999999999999999999999999999999999999988999999999999999999999999876 333 46
Q ss_pred cccccccCC
Q 036216 650 FNASCFLGN 658 (695)
Q Consensus 650 ~~~~~~~~n 658 (695)
++...+.+|
T Consensus 569 L~~L~L~~N 577 (635)
T 4g8a_A 569 LAFLNLTQN 577 (635)
T ss_dssp CCEEECTTC
T ss_pred CCEEEeeCC
Confidence 666666665
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.6e-45 Score=398.78 Aligned_cols=454 Identities=19% Similarity=0.223 Sum_probs=347.0
Q ss_pred cEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCC
Q 036216 6 VELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPF 85 (695)
Q Consensus 6 ~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 85 (695)
++|++++|.++.+|.... ++|++|++++|.+++. .|..+.++++|++|++++|++++..|+.|.++++|++|++++
T Consensus 3 ~~l~ls~n~l~~ip~~~~---~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS---QKTTILNISQNYISEL-WTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCSSCCCSCC---TTCSEEECCSSCCCCC-CHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCccccccccc---ccccEEECCCCccccc-ChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 689999999999997433 8999999999999985 668899999999999999999988899999999999999999
Q ss_pred CCCCCCchhhhcCCCCCCEEEcccCcCCc-ccchhhcCCCCCCEEEccCCcCccccchhhhhhhccccccc--ceEEccC
Q 036216 86 NHFSSSVPKWFDRLTHLEHLSLSYNSLEG-RIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGL--ESLALAS 162 (695)
Q Consensus 86 n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L--~~L~L~~ 162 (695)
|+++ .+|.. .+++|++|++++|.+++ ..|..|+++++|++|++++|++.+. .+..+.. | ++|++++
T Consensus 79 N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~-------~~~~l~~-L~L~~L~l~~ 147 (520)
T 2z7x_B 79 NKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS-------SVLPIAH-LNISKVLLVL 147 (520)
T ss_dssp SCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG-------GGGGGTT-SCEEEEEEEE
T ss_pred Ccee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh-------hcccccc-ceeeEEEeec
Confidence 9999 56655 89999999999999987 4789999999999999999998762 2333444 6 9999999
Q ss_pred ccc--ccccchhcCCCCC-CCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEccccc-------ceeecC
Q 036216 163 SSI--SGHLTDQLGQFKN-LDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANK-------LTLKVK 232 (695)
Q Consensus 163 n~~--~~~~~~~l~~l~~-L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~-------l~~~~~ 232 (695)
|.+ .+..|..+..+.. ...+++++|.+. +.++...+.++++|+.+++++|. +.+..+
T Consensus 148 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~-------------~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 214 (520)
T 2z7x_B 148 GETYGEKEDPEGLQDFNTESLHIVFPTNKEF-------------HFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA 214 (520)
T ss_dssp CTTTTSSCCTTTTTTCCEEEEEEECCSSSCC-------------CCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH
T ss_pred ccccccccccccccccccceEEEEeccCcch-------------hhhhhhhhhcccceeeccccccccccccceeecchh
Confidence 999 7777887777662 334566666654 45666677788888888888876 444443
Q ss_pred CCCCCCCCccEEEccCCCCCCCCCcccc---CCCCCCEEEcccCCCccccChHHh----hcccccceeecccccccccc-
Q 036216 233 RDWIPPFQLIELGLRSCDVGSRFPLWLY---SQKDLQFLDLFNSGISGTFPNRLL----KSASQLYLLDLGHNQIHGEL- 304 (695)
Q Consensus 233 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~---~~~~L~~L~l~~~~i~~~~~~~~~----~~l~~L~~L~l~~n~l~~~~- 304 (695)
.+..+++|+.|++++|.+.+..+..+. ..++|++|++++|.+.+.+|..++ ..+++|+.+++++|.+ ..+
T Consensus 215 -~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~ 292 (520)
T 2z7x_B 215 -KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQ 292 (520)
T ss_dssp -GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCT
T ss_pred -hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecch
Confidence 566777788888877765543221111 135788888888887777777653 5677788888888777 222
Q ss_pred cCcccc---CccceEecccccceeec-CCCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccC--CCCc
Q 036216 305 TNLTKA---SQLSYLSLIANNFSGSL-PLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQG--KLPD 378 (695)
Q Consensus 305 ~~~~~~---~~L~~L~l~~n~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~ 378 (695)
..+... .+|+.|++++|.+.... +..+++|++|++++|.+++.++..+ ..+++|++|++++|.+++ .+|.
T Consensus 293 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~----~~l~~L~~L~L~~N~l~~l~~~~~ 368 (520)
T 2z7x_B 293 SYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENC----GHLTELETLILQMNQLKELSKIAE 368 (520)
T ss_dssp HHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTC----CCCSSCCEEECCSSCCCBHHHHHH
T ss_pred hhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhh----ccCCCCCEEEccCCccCccccchH
Confidence 122222 56888888888776544 2556788888888888876555433 457888888888888875 4456
Q ss_pred cccCCCCCCEEeCCCCcccccCCc-cccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCC
Q 036216 379 CWMSYQNLMALDLSNNKFTGNLPT-SLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFS 457 (695)
Q Consensus 379 ~~~~~~~L~~L~ls~n~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 457 (695)
.+..+++|++|++++|.+.+.+|. .+..+++|++|++++|++++..|..+. ++|+.|++++|.+. .+|..++ .++
T Consensus 369 ~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~-~l~ 444 (520)
T 2z7x_B 369 MTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVV-KLE 444 (520)
T ss_dssp HHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGG-GCT
T ss_pred HHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhh-cCC
Confidence 678888888888888888864554 477788888888888888766665553 68888888888884 7887776 788
Q ss_pred CCcEEEcCCCcccccCCcc-ccCCCCCCEEeCCCCcCcccCC
Q 036216 458 RMVLLILRSNNFDGPLPTE-LCDLAFLQILDLADNNLSGTIP 498 (695)
Q Consensus 458 ~L~~L~l~~n~~~~~~~~~-l~~l~~L~~L~L~~n~l~~~~p 498 (695)
+|++|++++|++++ +|.. +..+++|++|++++|++++..+
T Consensus 445 ~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 445 ALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp TCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCC
Confidence 88888888888884 4544 7888888888888888875443
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.3e-45 Score=406.07 Aligned_cols=437 Identities=20% Similarity=0.280 Sum_probs=257.6
Q ss_pred CCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCc------c------cCCccCCCCCCCCEEeCCCCCCCCCchh
Q 036216 27 STLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQ------G------PIPEGLQNLTSLKHLGLPFNHFSSSVPK 94 (695)
Q Consensus 27 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~------~------~~~~~~~~l~~L~~L~L~~n~l~~~~p~ 94 (695)
.+++.|+|+++.+.+. +|..++.+++|++|+|++|.+. + .+|... +.+|+ +++++|.+.+..|.
T Consensus 81 ~~V~~L~L~~~~l~g~-lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~ 156 (636)
T 4eco_A 81 GRVTGLSLEGFGASGR-VPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRE 156 (636)
T ss_dssp CCEEEEECTTSCCEEE-ECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGG
T ss_pred CCEEEEEecCcccCCc-CChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchh
Confidence 4677888888888766 7777888888888888888652 1 111111 23344 44444444444443
Q ss_pred hhcC-------------------CCCCCEEEcc--cCcCCcccchhhcCCCCCCEEEccCCcCccc--------------
Q 036216 95 WFDR-------------------LTHLEHLSLS--YNSLEGRIPRSMARLCNLRRLYLGGAKLNQE-------------- 139 (695)
Q Consensus 95 ~~~~-------------------l~~L~~L~Ls--~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-------------- 139 (695)
.+.. ...++.+.+. +|.+++ +|..++++++|++|++++|.+++.
T Consensus 157 ~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~ 235 (636)
T 4eco_A 157 DFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYA 235 (636)
T ss_dssp GSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHH
T ss_pred hHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchh
Confidence 3331 1112222222 456665 677777777777777777777663
Q ss_pred ---cchhhhhhhc--ccccccceEEccCcccccccchhcCCCCCCCEEEccCCC-cCCCceEEeecccccc-ccChhhhh
Q 036216 140 ---ISEILEIFSG--CVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNNS-IVGPRVLQLYLNKLHG-TLSEIHFA 212 (695)
Q Consensus 140 ---~~~~~~~~~~--~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~-i~~~~~~~l~~~~~~~-~l~~~~~~ 212 (695)
+|. .++ .+.. |++|++++|.+.+.+|..++++++|++|++++|+ ++ + .+|. .+.
T Consensus 236 ~~~ip~----~l~~~~l~~-L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~-------------~~~lp~-~~~ 296 (636)
T 4eco_A 236 QQYKTE----DLKWDNLKD-LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS-------------GEQLKD-DWQ 296 (636)
T ss_dssp HHHTTS----CCCGGGCTT-CCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSC-------------HHHHHH-HHH
T ss_pred cccCch----hhhhcccCC-CCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCc-------------cccchH-HHH
Confidence 444 444 5555 7777777777777788888899999999999887 64 3 3444 333
Q ss_pred CC------CCCCEEEcccccceeecCCCCCCCCCccEEEccCCCCCCCCCc--cccCCCCCCEEEcccCCCccccChHHh
Q 036216 213 NL------TKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPL--WLYSQKDLQFLDLFNSGISGTFPNRLL 284 (695)
Q Consensus 213 ~l------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~i~~~~~~~~~ 284 (695)
++ ++|+.|++++|. +. .+|. .+..+++|++|++++|.+.|.+| .+
T Consensus 297 ~L~~~~~l~~L~~L~L~~n~------------------------l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~ 349 (636)
T 4eco_A 297 ALADAPVGEKIQIIYIGYNN------------------------LK-TFPVETSLQKMKKLGMLECLYNQLEGKLP--AF 349 (636)
T ss_dssp HHHHSGGGGTCCEEECCSSC------------------------CS-SCCCHHHHTTCTTCCEEECCSCCCEEECC--CC
T ss_pred hhhccccCCCCCEEECCCCc------------------------CC-ccCchhhhccCCCCCEEeCcCCcCccchh--hh
Confidence 32 444444444443 33 3455 56666666666666666666666 34
Q ss_pred hcccccceeecccccccccccCccccCc-cceEecccccceeecCCCCCCCcEEEccCCcCCCccchhhhhhhhhccccc
Q 036216 285 KSASQLYLLDLGHNQIHGELTNLTKASQ-LSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLK 363 (695)
Q Consensus 285 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~ 363 (695)
..+++|+.|++++|.+...+..+..+++ |++|++++|.
T Consensus 350 ~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~----------------------------------------- 388 (636)
T 4eco_A 350 GSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK----------------------------------------- 388 (636)
T ss_dssp EEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSC-----------------------------------------
T ss_pred CCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCc-----------------------------------------
Confidence 5566666666666666533333333333 3333333333
Q ss_pred eeecccccccCCCCccccCCC--CCCEEeCCCCcccccCCcccc-------CCCCCcEEECcCCcceeeCCccccCCCCC
Q 036216 364 FLFLDRNILQGKLPDCWMSYQ--NLMALDLSNNKFTGNLPTSLG-------SLSSLVSLHLRKNRLSGTIPILLKNCTSL 434 (695)
Q Consensus 364 ~L~l~~n~l~~~~~~~~~~~~--~L~~L~ls~n~~~~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 434 (695)
++ .+|..+..++ +|++|++++|.+.+..|..+. .+++|++|++++|++....+..+..+++|
T Consensus 389 --------l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L 459 (636)
T 4eco_A 389 --------LK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPL 459 (636)
T ss_dssp --------CS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCC
T ss_pred --------Cc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCC
Confidence 33 2233332222 444444444444444444443 34455555555555542222233345555
Q ss_pred cEEEcCCCcccccCChhhhhcC-------CCCcEEEcCCCcccccCCcccc--CCCCCCEEeCCCCcCcccCChhhhhcc
Q 036216 435 VTLDVGENEVFGNIPSWFGERF-------SRMVLLILRSNNFDGPLPTELC--DLAFLQILDLADNNLSGTIPNCIHNLT 505 (695)
Q Consensus 435 ~~L~l~~n~~~~~~~~~~~~~l-------~~L~~L~l~~n~~~~~~~~~l~--~l~~L~~L~L~~n~l~~~~p~~~~~l~ 505 (695)
++|++++|.+. .+|...+... ++|+.|++++|+++ .+|..+. .+++|++|++++|++++ +|..+..++
T Consensus 460 ~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~ 536 (636)
T 4eco_A 460 SSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSS 536 (636)
T ss_dssp SEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCS
T ss_pred CEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCC
Confidence 55555555553 4444332222 25666666666666 4555554 66666666666666664 566555555
Q ss_pred cCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEc------CCccccccCCccccCCCCC
Q 036216 506 AMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDF------SKNLFSGTLPMGLTNLKAV 579 (695)
Q Consensus 506 ~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~L------s~n~l~~~~p~~l~~l~~L 579 (695)
+| +.|++ ++|++.+.+|..+..+++|
T Consensus 537 ~L------------------------------------------------~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L 568 (636)
T 4eco_A 537 TL------------------------------------------------KGFGIRNQRDAQGNRTLREWPEGITLCPSL 568 (636)
T ss_dssp SC------------------------------------------------CEEECCSCBCTTCCBCCCCCCTTGGGCSSC
T ss_pred CC------------------------------------------------CEEECCCCcccccCcccccChHHHhcCCCC
Confidence 54 44445 6788888999999999999
Q ss_pred CEEeccCCcccccCCccccCcCCCCEEECCCCcccccCC
Q 036216 580 QSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIP 618 (695)
Q Consensus 580 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p 618 (695)
++|+|++|++. .+|..+. ++|+.|++++|++....+
T Consensus 569 ~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~~ 604 (636)
T 4eco_A 569 TQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISIDL 604 (636)
T ss_dssp CEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEEEC
T ss_pred CEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCccccH
Confidence 99999999994 8888766 899999999998875443
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=7.6e-43 Score=383.41 Aligned_cols=461 Identities=18% Similarity=0.205 Sum_probs=281.3
Q ss_pred CCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEEc
Q 036216 28 TLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSL 107 (695)
Q Consensus 28 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 107 (695)
..+++++++|.++. +|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++
T Consensus 32 ~~~~l~ls~~~L~~--ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 32 LESMVDYSNRNLTH--VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp -CCEEECTTSCCCS--CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCCCCcc--CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 33556666666554 444332 55666666666665555555556666666666666555555555555566666666
Q ss_pred ccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcccccc-cchhcCCCCCCCEEEccC
Q 036216 108 SYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGH-LTDQLGQFKNLDSLDLSN 186 (695)
Q Consensus 108 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~L~~ 186 (695)
++|.++ .+|.. .+++|++|++++|++ .+. .|..|+++++|++|++++
T Consensus 108 s~N~l~-~lp~~--~l~~L~~L~Ls~N~l-----------------------------~~l~~p~~~~~l~~L~~L~L~~ 155 (562)
T 3a79_B 108 SHNRLQ-NISCC--PMASLRHLDLSFNDF-----------------------------DVLPVCKEFGNLTKLTFLGLSA 155 (562)
T ss_dssp TTSCCC-EECSC--CCTTCSEEECCSSCC-----------------------------SBCCCCGGGGGCTTCCEEEEEC
T ss_pred CCCcCC-ccCcc--ccccCCEEECCCCCc-----------------------------cccCchHhhcccCcccEEecCC
Confidence 665555 33333 455555555555544 332 245677788888888888
Q ss_pred CCcCCCceEEeeccccccccChhhhhCCCCC--CEEEcccccc--eeecCCCCCCCCCccEEEccCCCCCCCCCccccCC
Q 036216 187 NSIVGPRVLQLYLNKLHGTLSEIHFANLTKL--SVFLVGANKL--TLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQ 262 (695)
Q Consensus 187 n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L--~~L~l~~n~l--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 262 (695)
|++++ ..+..+++| +.|++++|.+ .+. .|..+..+
T Consensus 156 n~l~~-----------------~~~~~l~~L~L~~L~L~~n~l~~~~~------------------------~~~~l~~l 194 (562)
T 3a79_B 156 AKFRQ-----------------LDLLPVAHLHLSCILLDLVSYHIKGG------------------------ETESLQIP 194 (562)
T ss_dssp SBCCT-----------------TTTGGGTTSCEEEEEEEESSCCCCSS------------------------SCCEEEEC
T ss_pred Ccccc-----------------CchhhhhhceeeEEEeeccccccccc------------------------Cccccccc
Confidence 77641 123344444 6666666665 333 33333332
Q ss_pred C-CCCEEEcccCCCccccChHHhhcccccceeeccccc-----ccccccCccccCccceEecccccceeecCCCCCCCcE
Q 036216 263 K-DLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQ-----IHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTV 336 (695)
Q Consensus 263 ~-~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~-----l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~ 336 (695)
. ..-.+++++|.+.+.++...+..+++|+.+++++|. +.+.++.+...+.|+.+++.++.+.+.
T Consensus 195 ~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~---------- 264 (562)
T 3a79_B 195 NTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWK---------- 264 (562)
T ss_dssp CEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHH----------
T ss_pred CcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHH----------
Confidence 2 111345555555555555555556667777776663 222333444445555555554433321
Q ss_pred EEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccc-----cCCCCCCEEeCCCCcccccCC-cccc---CC
Q 036216 337 LELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCW-----MSYQNLMALDLSNNKFTGNLP-TSLG---SL 407 (695)
Q Consensus 337 L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-----~~~~~L~~L~ls~n~~~~~~~-~~~~---~l 407 (695)
. .......+ ..++|++|++++|.+++.+|..+ ..++.|+.++++.+.+ .+| ..+. ..
T Consensus 265 ------~-----~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~ 330 (562)
T 3a79_B 265 ------C-----SVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAE 330 (562)
T ss_dssp ------H-----HHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHT
T ss_pred ------H-----HHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhcc
Confidence 1 11111111 12366666666666666666554 4455555555555544 233 1111 12
Q ss_pred CCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCccccc--CCccccCCCCCCE
Q 036216 408 SSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGP--LPTELCDLAFLQI 485 (695)
Q Consensus 408 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~l~~l~~L~~ 485 (695)
.+|++|++++|.+.... ....+++|++|++++|.+.+.+|..+. .+++|++|++++|++++. +|..+..+++|++
T Consensus 331 ~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~ 407 (562)
T 3a79_B 331 MNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCS-TLKRLQTLILQRNGLKNFFKVALMTKNMSSLET 407 (562)
T ss_dssp CCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCC-SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCE
T ss_pred CcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhc-ccCCCCEEECCCCCcCCcccchhhhcCCCCCCE
Confidence 56777777777764221 125677777777777777666666654 677788888888877752 3456788888888
Q ss_pred EeCCCCcCcccCCh-hhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCcc
Q 036216 486 LDLADNNLSGTIPN-CIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNL 564 (695)
Q Consensus 486 L~L~~n~l~~~~p~-~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~ 564 (695)
|++++|++++.+|. .+..+++| +.|++++|+
T Consensus 408 L~l~~N~l~~~~~~~~~~~l~~L------------------------------------------------~~L~l~~n~ 439 (562)
T 3a79_B 408 LDVSLNSLNSHAYDRTCAWAESI------------------------------------------------LVLNLSSNM 439 (562)
T ss_dssp EECTTSCCBSCCSSCCCCCCTTC------------------------------------------------CEEECCSSC
T ss_pred EECCCCcCCCccChhhhcCcccC------------------------------------------------CEEECCCCC
Confidence 88888888864554 34444433 788888888
Q ss_pred ccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcC-CcCCCCCCEEEcccCcCcccCCC
Q 036216 565 FSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQS-MSSLTFLNHLNLSNNYLTGKIPS 643 (695)
Q Consensus 565 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~ls~N~l~~~iP~ 643 (695)
+++..|..+. ++|++|++++|+++ .+|..+..+++|+.|++++|+++ .+|.. +..+++|++|++++|++.+..|.
T Consensus 440 l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 440 LTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp CCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred CCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 8877776554 79999999999999 78887789999999999999999 56665 99999999999999999987775
Q ss_pred C
Q 036216 644 S 644 (695)
Q Consensus 644 ~ 644 (695)
.
T Consensus 516 ~ 516 (562)
T 3a79_B 516 I 516 (562)
T ss_dssp H
T ss_pred H
Confidence 4
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.5e-43 Score=396.37 Aligned_cols=75 Identities=23% Similarity=0.317 Sum_probs=51.9
Q ss_pred CcCCcccchhhcCCCCCCEEEccCCcCcc-----------------ccchhhhhhhc--ccccccceEEccCcccccccc
Q 036216 110 NSLEGRIPRSMARLCNLRRLYLGGAKLNQ-----------------EISEILEIFSG--CVSNGLESLALASSSISGHLT 170 (695)
Q Consensus 110 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----------------~~~~~~~~~~~--~~~~~L~~L~L~~n~~~~~~~ 170 (695)
|.+++ +|..++++++|++|+|++|++++ .+|. .++ .+.. |+.|+|++|.+.+.+|
T Consensus 435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~----~l~f~~L~~-L~~L~Ls~N~l~~~iP 508 (876)
T 4ecn_A 435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE----ELSWSNLKD-LTDVELYNCPNMTQLP 508 (876)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS----CCCGGGCTT-CCEEEEESCTTCCSCC
T ss_pred Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCCh----hhhhccCCC-CCEEECcCCCCCccCh
Confidence 55555 56666666666666666666665 2343 333 5555 7777777777777778
Q ss_pred hhcCCCCCCCEEEccCCC-cC
Q 036216 171 DQLGQFKNLDSLDLSNNS-IV 190 (695)
Q Consensus 171 ~~l~~l~~L~~L~L~~n~-i~ 190 (695)
..++++++|++|++++|+ ++
T Consensus 509 ~~l~~L~~L~~L~Ls~N~~ls 529 (876)
T 4ecn_A 509 DFLYDLPELQSLNIACNRGIS 529 (876)
T ss_dssp GGGGGCSSCCEEECTTCTTSC
T ss_pred HHHhCCCCCCEEECcCCCCcc
Confidence 888888889999988887 64
No 23
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.5e-43 Score=396.39 Aligned_cols=397 Identities=18% Similarity=0.203 Sum_probs=217.8
Q ss_pred CCCCCCchhhhcCCCCCCEEEcccCcCCc-----------------ccchhhc--CCCCCCEEEccCCcCccccchhhhh
Q 036216 86 NHFSSSVPKWFDRLTHLEHLSLSYNSLEG-----------------RIPRSMA--RLCNLRRLYLGGAKLNQEISEILEI 146 (695)
Q Consensus 86 n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-----------------~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~ 146 (695)
|.+++ +|..|+++++|++|+|++|.+++ .+|..++ ++++|++|++++|.+.+.+|.
T Consensus 435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~---- 509 (876)
T 4ecn_A 435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD---- 509 (876)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCG----
T ss_pred Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChH----
Confidence 55554 56666666666666666666665 2566655 666666666666666666665
Q ss_pred hhcccccccceEEccCcc-ccc-ccchhcCC-------CCCCCEEEccCCCcCCCceEEeeccccccccCh-hhhhCCCC
Q 036216 147 FSGCVSNGLESLALASSS-ISG-HLTDQLGQ-------FKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSE-IHFANLTK 216 (695)
Q Consensus 147 ~~~~~~~~L~~L~L~~n~-~~~-~~~~~l~~-------l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~-~~~~~l~~ 216 (695)
.++.++. |+.|++++|. +++ .+|..++. +++|++|++++|.++ .+|. ..+.++++
T Consensus 510 ~l~~L~~-L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~--------------~ip~~~~l~~L~~ 574 (876)
T 4ecn_A 510 FLYDLPE-LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE--------------EFPASASLQKMVK 574 (876)
T ss_dssp GGGGCSS-CCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC--------------BCCCHHHHTTCTT
T ss_pred HHhCCCC-CCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC--------------ccCChhhhhcCCC
Confidence 4555555 6666666665 665 55554444 448888888888875 5554 35777777
Q ss_pred CCEEEcccccceeecCCCCCCCCCccEEEccCCCCCCCCCccccCCCC-CCEEEcccCCCccccChHHhhcccccceeec
Q 036216 217 LSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKD-LQFLDLFNSGISGTFPNRLLKSASQLYLLDL 295 (695)
Q Consensus 217 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l 295 (695)
|+.|++++|.+. .++ .+..+++|+.|++++|.+. .+|..+..+++ |++|++++|.+. .+|..+ ...+.
T Consensus 575 L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~-~~~~~------ 643 (876)
T 4ecn_A 575 LGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIF-NAKSV------ 643 (876)
T ss_dssp CCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCC-CTTCS------
T ss_pred CCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhh-hcccc------
Confidence 777777777766 333 4555555555555555554 44444444444 444444444444 333211 11110
Q ss_pred ccccccccccCccccCccceEecccccceeecCCCCCCCcEEEccCCcCCCccchhhhh-hhhhccccceeecccccccC
Q 036216 296 GHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCY-TINETMKLKFLFLDRNILQG 374 (695)
Q Consensus 296 ~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~l~~ 374 (695)
++|+.|++++|.+.+.++...+. ....+++|+.|++++|.++
T Consensus 644 ------------------------------------~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~- 686 (876)
T 4ecn_A 644 ------------------------------------YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ- 686 (876)
T ss_dssp ------------------------------------SCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-
T ss_pred ------------------------------------CCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-
Confidence 11333333333333221111000 0001123333334433333
Q ss_pred CCCcc-ccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhh
Q 036216 375 KLPDC-WMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFG 453 (695)
Q Consensus 375 ~~~~~-~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 453 (695)
.+|.. +..+++|+.|++++|.+. .+|..+.... +..+.++++|+.|++++|.+. .+|..++
T Consensus 687 ~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~----------------~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~ 748 (876)
T 4ecn_A 687 KFPTELFATGSPISTIILSNNLMT-SIPENSLKPK----------------DGNYKNTYLLTTIDLRFNKLT-SLSDDFR 748 (876)
T ss_dssp SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCT----------------TSCCTTGGGCCEEECCSSCCC-CCCGGGS
T ss_pred ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccc----------------cccccccCCccEEECCCCCCc-cchHHhh
Confidence 22221 223444444444444443 2222111100 000112236666666666664 5665553
Q ss_pred -hcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCc
Q 036216 454 -ERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGT 532 (695)
Q Consensus 454 -~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~ 532 (695)
..+++|+.|++++|++++ +|..+..+++|+.|+|++|+
T Consensus 749 ~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~---------------------------------------- 787 (876)
T 4ecn_A 749 ATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR---------------------------------------- 787 (876)
T ss_dssp TTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB----------------------------------------
T ss_pred hccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC----------------------------------------
Confidence 346677777777777765 56667777777777777764
Q ss_pred cccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCc
Q 036216 533 VTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNK 612 (695)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~ 612 (695)
++++|++.+.+|..+..+++|++|+|++|++ +.+|..+. ++|+.|+|++|+
T Consensus 788 --------------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~ 838 (876)
T 4ecn_A 788 --------------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNP 838 (876)
T ss_dssp --------------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCT
T ss_pred --------------------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCC
Confidence 1355666667777777777777777777777 46776654 577777777777
Q ss_pred ccccCCcCCcCCCCCCEEEcccCcCc
Q 036216 613 FTGEIPQSMSSLTFLNHLNLSNNYLT 638 (695)
Q Consensus 613 l~~~~p~~l~~l~~L~~L~ls~N~l~ 638 (695)
+....+..+.....+..+.+.+|+..
T Consensus 839 l~~i~~~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 839 NISIDVTSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp TCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred CCccChHHccccccchheeecCCCcc
Confidence 77666666655555556666666543
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.1e-42 Score=378.59 Aligned_cols=469 Identities=20% Similarity=0.229 Sum_probs=282.8
Q ss_pred CCCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEe
Q 036216 3 PSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLG 82 (695)
Q Consensus 3 ~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 82 (695)
...+++++++++++.+|.... ++|++|++++|.+++. .|..+.++++|++|+|++|++++..|++|.++++|++|+
T Consensus 31 ~~~~~l~ls~~~L~~ip~~~~---~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 31 ELESMVDYSNRNLTHVPKDLP---PRTKALSLSQNSISEL-RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp --CCEEECTTSCCCSCCTTSC---TTCCEEECCSSCCCCC-CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCCCccCCCCCC---CCcCEEECCCCCcccc-ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 345799999999999997433 8999999999999986 667899999999999999999988899999999999999
Q ss_pred CCCCCCCCCchhhhcCCCCCCEEEcccCcCCcc-cchhhcCCCCCCEEEccCCcCccccchhhhhhhccccc-ccceEEc
Q 036216 83 LPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGR-IPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSN-GLESLAL 160 (695)
Q Consensus 83 L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~-~L~~L~L 160 (695)
+++|+++ .+|.. .+++|++|++++|.+.+. .|..|+++++|++|++++|++.+.. +..+.. .|++|++
T Consensus 107 Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~-------~~~l~~L~L~~L~L 176 (562)
T 3a79_B 107 VSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD-------LLPVAHLHLSCILL 176 (562)
T ss_dssp CTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT-------TGGGTTSCEEEEEE
T ss_pred CCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc-------hhhhhhceeeEEEe
Confidence 9999999 56655 899999999999999863 4689999999999999999987521 222222 1377777
Q ss_pred cCccc--ccccchhcCCCCC-CCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCC
Q 036216 161 ASSSI--SGHLTDQLGQFKN-LDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIP 237 (695)
Q Consensus 161 ~~n~~--~~~~~~~l~~l~~-L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 237 (695)
++|.+ .+..|..+..+.. .-.+++++|.+. +.++...+..+++|+.+++++|.....
T Consensus 177 ~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~-------------~~~~~~~~~~l~~L~~L~l~~n~~~~~------- 236 (562)
T 3a79_B 177 DLVSYHIKGGETESLQIPNTTVLHLVFHPNSLF-------------SVQVNMSVNALGHLQLSNIKLNDENCQ------- 236 (562)
T ss_dssp EESSCCCCSSSCCEEEECCEEEEEEEECSSSCC-------------CCCCEEEESSEEEEEEEEEECCSTTHH-------
T ss_pred ecccccccccCcccccccCcceEEEEecCccch-------------hhhhhhcccccceEEEecccccccccc-------
Confidence 77777 6666666655441 113344444443 223333333444444444444321000
Q ss_pred CCCccEEEccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHhhcccccceeecccccccccccCccccCccceEe
Q 036216 238 PFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLS 317 (695)
Q Consensus 238 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ 317 (695)
.+ ......+..++.|+.+++.++.+.+... .+.. .....++|++|+
T Consensus 237 ------------~l-~~~~~~l~~l~~L~~L~L~~~~l~~~~~--------------------~~~~-~~~~~~~L~~L~ 282 (562)
T 3a79_B 237 ------------RL-MTFLSELTRGPTLLNVTLQHIETTWKCS--------------------VKLF-QFFWPRPVEYLN 282 (562)
T ss_dssp ------------HH-HHHHHHHHSCSSCEEEEEEEEEECHHHH--------------------HHHH-HHHTTSSEEEEE
T ss_pred ------------hH-HHHHHHHhccCcceEEEecCCcCcHHHH--------------------HHHH-HhhhcccccEEE
Confidence 00 0001122333344444443333221110 0011 111223566666
Q ss_pred cccccceeecCCCC-----CCCcEEEccCCcCCC-ccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeC
Q 036216 318 LIANNFSGSLPLIS-----SNLTVLELSGNSLSG-PIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDL 391 (695)
Q Consensus 318 l~~n~~~~~~~~~~-----~~L~~L~l~~n~l~~-~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 391 (695)
+++|.+.+.+|... ++++.|.+.++.... .+|......+....+|+.|++++|.+.... ....+++|++|++
T Consensus 283 l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l 360 (562)
T 3a79_B 283 IYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNF 360 (562)
T ss_dssp EEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEEC
T ss_pred EeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEEC
Confidence 66666655555433 334433333222111 122111111111234555555555543211 1134444555555
Q ss_pred CCCcccccCCccccCCCCCcEEECcCCcceee--CCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcc
Q 036216 392 SNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGT--IPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNF 469 (695)
Q Consensus 392 s~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~ 469 (695)
++|.+++..|..+..+++|++|++++|++++. .|..+. .+++|+.|++++|++
T Consensus 361 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~-------------------------~l~~L~~L~l~~N~l 415 (562)
T 3a79_B 361 TQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK-------------------------NMSSLETLDVSLNSL 415 (562)
T ss_dssp CSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTT-------------------------TCTTCCEEECTTSCC
T ss_pred CCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhc-------------------------CCCCCCEEECCCCcC
Confidence 55554444444444444444444444444421 122233 455556666666665
Q ss_pred cccCCc-cccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchh
Q 036216 470 DGPLPT-ELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADY 548 (695)
Q Consensus 470 ~~~~~~-~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (695)
++.+|. .+..+++|++|++++|++++.+|..+. +
T Consensus 416 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~------------------------------------------- 450 (562)
T 3a79_B 416 NSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--P------------------------------------------- 450 (562)
T ss_dssp BSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--T-------------------------------------------
T ss_pred CCccChhhhcCcccCCEEECCCCCCCcchhhhhc--C-------------------------------------------
Confidence 553333 366677777777777777655444321 1
Q ss_pred hhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCcc-ccCcCCCCEEECCCCcccccCC
Q 036216 549 NEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPET-IGTMRSLESIDFSVNKFTGEIP 618 (695)
Q Consensus 549 ~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~Ls~n~l~~~~p 618 (695)
.|+.|++++|+++ .+|..+..+++|++|+|++|+++ .+|.. |+.+++|+.|++++|.+.+..|
T Consensus 451 -----~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 451 -----KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp -----TCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred -----cCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 2377888888887 67777778999999999999999 55555 8899999999999999886443
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.1e-38 Score=339.49 Aligned_cols=384 Identities=21% Similarity=0.222 Sum_probs=239.8
Q ss_pred EEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcc-cCCccCCCCCCCCEEeCCC
Q 036216 7 ELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQG-PIPEGLQNLTSLKHLGLPF 85 (695)
Q Consensus 7 ~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~ 85 (695)
.++.+++.++.+|. + .++|++|+|++|.+++. .|..+.++++|++|++++|.+.+ ..+..|.++++|++|++++
T Consensus 14 ~~~c~~~~l~~lp~--l--~~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 14 NAICINRGLHQVPE--L--PAHVNYVDLSLNSIAEL-NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp EEECCSSCCSSCCC--C--CTTCCEEECCSSCCCEE-CTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred ccCcCCCCcccCCC--C--CCccCEEEecCCccCcC-ChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 34555555555553 1 14555555555555543 34445555555555555555442 2234455555555555555
Q ss_pred CCCCCCchhhhcCCCCCCEEEcccCcCCcccchh--hcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCc
Q 036216 86 NHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRS--MARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASS 163 (695)
Q Consensus 86 n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n 163 (695)
|.+++..|..|+++++|++|++++|.+++..+.. ++++++|++|++++|.+.
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~-------------------------- 142 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK-------------------------- 142 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCC--------------------------
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccC--------------------------
Confidence 5555444555555555555555555554333222 444444444444444433
Q ss_pred ccccccchh-cCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCC--CC
Q 036216 164 SISGHLTDQ-LGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPP--FQ 240 (695)
Q Consensus 164 ~~~~~~~~~-l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~--~~ 240 (695)
+..|.. +..+++|++|++++|.++ +..+..+..+ ..
T Consensus 143 ---~~~~~~~~~~l~~L~~L~L~~n~l~--------------------------------------~~~~~~l~~l~~~~ 181 (455)
T 3v47_A 143 ---KIQPASFFLNMRRFHVLDLTFNKVK--------------------------------------SICEEDLLNFQGKH 181 (455)
T ss_dssp ---SCCCCGGGGGCTTCCEEECTTCCBS--------------------------------------CCCTTTSGGGTTCE
T ss_pred ---ccCcccccCCCCcccEEeCCCCccc--------------------------------------ccChhhhhcccccc
Confidence 222222 455566666666666554 3333333322 34
Q ss_pred ccEEEccCCCCCCCCCcc--------ccCCCCCCEEEcccCCCccccChHHhhc--ccccceeecccccccccccCcccc
Q 036216 241 LIELGLRSCDVGSRFPLW--------LYSQKDLQFLDLFNSGISGTFPNRLLKS--ASQLYLLDLGHNQIHGELTNLTKA 310 (695)
Q Consensus 241 L~~L~l~~~~~~~~~~~~--------l~~~~~L~~L~l~~~~i~~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~ 310 (695)
++.+++++|.+.+..+.+ +..+++|++|++++|.+.+..|..+... .++|+.|++++|...+.......+
T Consensus 182 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 261 (455)
T 3v47_A 182 FTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF 261 (455)
T ss_dssp EEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSS
T ss_pred ccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhh
Confidence 555555555554433332 2345677888888887776666655432 256667777666554321111110
Q ss_pred CccceEecccccceeecCCCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEe
Q 036216 311 SQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALD 390 (695)
Q Consensus 311 ~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 390 (695)
.+.....+.. ...++|+.|++++|.+.+..|..+..+++|++|+
T Consensus 262 ----------------------------------~~~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 305 (455)
T 3v47_A 262 ----------------------------------KDPDNFTFKG--LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLT 305 (455)
T ss_dssp ----------------------------------CCCCTTTTGG--GTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred ----------------------------------ccCccccccc--ccccCceEEEecCccccccchhhcccCCCCCEEE
Confidence 0000000000 0246788888888888888888889999999999
Q ss_pred CCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCccc
Q 036216 391 LSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFD 470 (695)
Q Consensus 391 ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 470 (695)
+++|.+.+..|..|..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+. .+++|++|++++|+++
T Consensus 306 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~ 384 (455)
T 3v47_A 306 LAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFL-GLPNLKELALDTNQLK 384 (455)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCS
T ss_pred CCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcc-ccccccEEECCCCccc
Confidence 999999988888899999999999999999888888899999999999999999777777665 6999999999999999
Q ss_pred ccCCccccCCCCCCEEeCCCCcCcccCCh
Q 036216 471 GPLPTELCDLAFLQILDLADNNLSGTIPN 499 (695)
Q Consensus 471 ~~~~~~l~~l~~L~~L~L~~n~l~~~~p~ 499 (695)
+..+..+..+++|++|++++|++++..|.
T Consensus 385 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 385 SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 77777789999999999999999987773
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2e-39 Score=343.71 Aligned_cols=261 Identities=21% Similarity=0.250 Sum_probs=119.8
Q ss_pred CCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEE
Q 036216 51 LSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLY 130 (695)
Q Consensus 51 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 130 (695)
.++|++|++++|.+ +.+|.+++++++|++|++++|.+.+.+|..++.+.+|+.++++.|.. .++++|+
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~ 77 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELE 77 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEE
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEE
Confidence 45555555555555 35555555555555555555555555555555555544444333321 2345555
Q ss_pred ccCCcCccccchhhhhhhcccccccceEEccCcccccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhh
Q 036216 131 LGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIH 210 (695)
Q Consensus 131 L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~ 210 (695)
+++|.+++... ...+|++|++++|.+++ +|.. .++|++|++++|++
T Consensus 78 l~~~~l~~lp~---------~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l--------------------- 123 (454)
T 1jl5_A 78 LNNLGLSSLPE---------LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNL--------------------- 123 (454)
T ss_dssp CTTSCCSCCCS---------CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCC---------------------
T ss_pred ecCCccccCCC---------CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCcc---------------------
Confidence 55555443111 01124444444444444 2221 24455555555544
Q ss_pred hhCCCCCCEEEcccccceeecCCCCCCCCCccEEEccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHhhccccc
Q 036216 211 FANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQL 290 (695)
Q Consensus 211 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L 290 (695)
.+... + .++|++|++++|.+.+ +| .+..+++|++|++++|.+. .+|.. ..+|
T Consensus 124 -----------------~~l~~--~--~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~----~~~L 175 (454)
T 1jl5_A 124 -----------------KALSD--L--PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDL----PPSL 175 (454)
T ss_dssp -----------------SCCCS--C--CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCC----CTTC
T ss_pred -----------------CcccC--C--CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCC----cccc
Confidence 32110 0 1355566666665554 44 4667777777777777776 35542 2477
Q ss_pred ceeecccccccccccCccccCccceEecccccceeecCCCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccc
Q 036216 291 YLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRN 370 (695)
Q Consensus 291 ~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n 370 (695)
++|++++|.+.+ ++.+..+++|++|++++|.+.+ +|..+++|+.|++++|.++ .++. +..+++|++|++++|
T Consensus 176 ~~L~L~~n~l~~-l~~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~n~l~-~lp~-----~~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 176 EFIAAGNNQLEE-LPELQNLPFLTAIYADNNSLKK-LPDLPLSLESIVAGNNILE-ELPE-----LQNLPFLTTIYADNN 247 (454)
T ss_dssp CEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCSS-CCCCCTTCCEEECCSSCCS-SCCC-----CTTCTTCCEEECCSS
T ss_pred cEEECcCCcCCc-CccccCCCCCCEEECCCCcCCc-CCCCcCcccEEECcCCcCC-cccc-----cCCCCCCCEEECCCC
Confidence 777887777775 3456666777777777776664 3434445666666655554 2221 223444555555554
Q ss_pred cccCCCCccccCCCCCCEEeCCCCccc
Q 036216 371 ILQGKLPDCWMSYQNLMALDLSNNKFT 397 (695)
Q Consensus 371 ~l~~~~~~~~~~~~~L~~L~ls~n~~~ 397 (695)
.+++ +|.. +++|++|++++|.+.
T Consensus 248 ~l~~-l~~~---~~~L~~L~l~~N~l~ 270 (454)
T 1jl5_A 248 LLKT-LPDL---PPSLEALNVRDNYLT 270 (454)
T ss_dssp CCSS-CCSC---CTTCCEEECCSSCCS
T ss_pred cCCc-cccc---ccccCEEECCCCccc
Confidence 4442 2221 234444444444444
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.8e-38 Score=337.52 Aligned_cols=381 Identities=18% Similarity=0.186 Sum_probs=260.3
Q ss_pred cceEEccCcccccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCC
Q 036216 155 LESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRD 234 (695)
Q Consensus 155 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 234 (695)
+++|++++|.+++..|..|+++++|++|++++|.+. +.++...|.++++|++|++++|.+....+..
T Consensus 32 l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~-------------~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 98 (455)
T 3v47_A 32 VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPG-------------LVIRNNTFRGLSSLIILKLDYNQFLQLETGA 98 (455)
T ss_dssp CCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTT-------------CEECTTTTTTCTTCCEEECTTCTTCEECTTT
T ss_pred cCEEEecCCccCcCChhHhccCccccEEECcCCccc-------------ceECcccccccccCCEEeCCCCccCccChhh
Confidence 555555555555555667777888888888887764 3555556777788888888877777666667
Q ss_pred CCCCCCccEEEccCCCCCCCCCcc--ccCCCCCCEEEcccCCCccccChHHhhcccccceeecccccccccccC-ccccC
Q 036216 235 WIPPFQLIELGLRSCDVGSRFPLW--LYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTN-LTKAS 311 (695)
Q Consensus 235 ~~~~~~L~~L~l~~~~~~~~~~~~--l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~ 311 (695)
+..+++|++|++++|.+.+..+.. +..+++|++|++++|.+.+..|..++..+++|++|++++|.+.+..+. +..+.
T Consensus 99 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 178 (455)
T 3v47_A 99 FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQ 178 (455)
T ss_dssp TTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGT
T ss_pred ccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccc
Confidence 777777777777777666544333 666677777777777766555555555666666666666666544331 11110
Q ss_pred ccceEecccccceeecCCCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeC
Q 036216 312 QLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDL 391 (695)
Q Consensus 312 ~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 391 (695)
..+++.+++++|.+.+..+..+.. .....+..+++|++|++
T Consensus 179 -------------------~~~L~~L~l~~n~l~~~~~~~~~~--------------------~~~~~~~~~~~L~~L~L 219 (455)
T 3v47_A 179 -------------------GKHFTLLRLSSITLQDMNEYWLGW--------------------EKCGNPFKNTSITTLDL 219 (455)
T ss_dssp -------------------TCEEEEEECTTCBCTTCSTTCTTH--------------------HHHCCTTTTCEEEEEEC
T ss_pred -------------------cccccccccccCcccccchhhccc--------------------cccccccccceeeeEec
Confidence 023444444444443221111100 00011234566777777
Q ss_pred CCCcccccCCccccCC---CCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhh-hcCCCCcEEEcCCC
Q 036216 392 SNNKFTGNLPTSLGSL---SSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFG-ERFSRMVLLILRSN 467 (695)
Q Consensus 392 s~n~~~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~l~~L~~L~l~~n 467 (695)
++|.+++..|..+... ++|+.|++++|...+.... .+.+.+..+..+. ...++|+.|++++|
T Consensus 220 s~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n 285 (455)
T 3v47_A 220 SGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG--------------HTNFKDPDNFTFKGLEASGVKTCDLSKS 285 (455)
T ss_dssp TTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT--------------CCSSCCCCTTTTGGGTTSCCCEEECCSS
T ss_pred CCCcccccchhhhhccccccceeeEeeccccccccccc--------------hhhhccCcccccccccccCceEEEecCc
Confidence 7777666555544332 6777777777765432110 1111111111111 13478899999999
Q ss_pred cccccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcch
Q 036216 468 NFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAAD 547 (695)
Q Consensus 468 ~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (695)
++.+..|..+..+++|++|++++|++++..|..|..+++|
T Consensus 286 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L---------------------------------------- 325 (455)
T 3v47_A 286 KIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL---------------------------------------- 325 (455)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC----------------------------------------
T ss_pred cccccchhhcccCCCCCEEECCCCcccccChhHhcCcccC----------------------------------------
Confidence 9988888889999999999999999998778888777666
Q ss_pred hhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCC
Q 036216 548 YNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFL 627 (695)
Q Consensus 548 ~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 627 (695)
++|++++|.+++..|..|..+++|++|+|++|++++..|..|+.+++|+.|++++|++++..+..+..+++|
T Consensus 326 --------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 397 (455)
T 3v47_A 326 --------LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSL 397 (455)
T ss_dssp --------CEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred --------CEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcc
Confidence 788999999998889999999999999999999998889999999999999999999997777788999999
Q ss_pred CEEEcccCcCcccCCCCcccCc
Q 036216 628 NHLNLSNNYLTGKIPSSTQLQS 649 (695)
Q Consensus 628 ~~L~ls~N~l~~~iP~~~~~~~ 649 (695)
++|++++|++++.+|....+..
T Consensus 398 ~~L~l~~N~l~~~~~~~~~l~~ 419 (455)
T 3v47_A 398 QKIWLHTNPWDCSCPRIDYLSR 419 (455)
T ss_dssp CEEECCSSCBCCCTTTTHHHHH
T ss_pred cEEEccCCCcccCCCcchHHHH
Confidence 9999999999999997654433
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=4.4e-38 Score=333.39 Aligned_cols=350 Identities=23% Similarity=0.268 Sum_probs=191.6
Q ss_pred CCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCC-------------CEEeCCCCCCCCC
Q 036216 25 NFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSL-------------KHLGLPFNHFSSS 91 (695)
Q Consensus 25 ~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L-------------~~L~L~~n~l~~~ 91 (695)
+.++|++|++++|.+.. +|+.++++++|++|++++|.+.+.+|..++++++| ++|++++|.+++
T Consensus 9 ~~~~L~~L~l~~n~l~~--iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~- 85 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLTE--MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS- 85 (454)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-
T ss_pred ccccchhhhcccCchhh--CChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-
Confidence 35789999999999954 88889999999999999999988889988888765 888888888875
Q ss_pred chhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcccccccch
Q 036216 92 VPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTD 171 (695)
Q Consensus 92 ~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~ 171 (695)
+|. -.++|++|++++|.+++ +|.. .++|++|++++|++.+.. . ...+|++|++++|.+++ +|
T Consensus 86 lp~---~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~-~--------~~~~L~~L~L~~n~l~~-lp- 147 (454)
T 1jl5_A 86 LPE---LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALS-D--------LPPLLEYLGVSNNQLEK-LP- 147 (454)
T ss_dssp CCS---CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCC-S--------CCTTCCEEECCSSCCSS-CC-
T ss_pred CCC---CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCccc-C--------CCCCCCEEECcCCCCCC-Cc-
Confidence 343 13678888888888875 5543 367888888888776421 1 11237777777776665 34
Q ss_pred hcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCccEEEccCCCC
Q 036216 172 QLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDV 251 (695)
Q Consensus 172 ~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~ 251 (695)
.++++++|++|++++|+++ .+|. ..++|+.|++++ |.+
T Consensus 148 ~~~~l~~L~~L~l~~N~l~--------------~lp~----~~~~L~~L~L~~------------------------n~l 185 (454)
T 1jl5_A 148 ELQNSSFLKIIDVDNNSLK--------------KLPD----LPPSLEFIAAGN------------------------NQL 185 (454)
T ss_dssp CCTTCTTCCEEECCSSCCS--------------CCCC----CCTTCCEEECCS------------------------SCC
T ss_pred ccCCCCCCCEEECCCCcCc--------------ccCC----CcccccEEECcC------------------------CcC
Confidence 4666777777777766664 2221 112444444444 444
Q ss_pred CCCCCccccCCCCCCEEEcccCCCccccChHHhhcccccceeecccccccccccCccccCccceEecccccceeecCCCC
Q 036216 252 GSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLIS 331 (695)
Q Consensus 252 ~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 331 (695)
.+ +| .+..+++|++|++++|.+. .+|.. .++|+.|++++|.+. .++.+..+++|++|++++|++.+ +|..+
T Consensus 186 ~~-l~-~~~~l~~L~~L~l~~N~l~-~l~~~----~~~L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~-l~~~~ 256 (454)
T 1jl5_A 186 EE-LP-ELQNLPFLTAIYADNNSLK-KLPDL----PLSLESIVAGNNILE-ELPELQNLPFLTTIYADNNLLKT-LPDLP 256 (454)
T ss_dssp SS-CC-CCTTCTTCCEEECCSSCCS-SCCCC----CTTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCCSS-CCSCC
T ss_pred Cc-Cc-cccCCCCCCEEECCCCcCC-cCCCC----cCcccEEECcCCcCC-cccccCCCCCCCEEECCCCcCCc-ccccc
Confidence 43 23 3555666666666666665 34331 246677777777666 33445555666666666655543 23233
Q ss_pred CCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCc
Q 036216 332 SNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLV 411 (695)
Q Consensus 332 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~ 411 (695)
++|+.|+++ +|.+++ +|.. +++|++|++++|.+++. |.. .++|+
T Consensus 257 ~~L~~L~l~----------------------------~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~~---~~~L~ 300 (454)
T 1jl5_A 257 PSLEALNVR----------------------------DNYLTD-LPEL---PQSLTFLDVSENIFSGL-SEL---PPNLY 300 (454)
T ss_dssp TTCCEEECC----------------------------SSCCSC-CCCC---CTTCCEEECCSSCCSEE-SCC---CTTCC
T ss_pred cccCEEECC----------------------------CCcccc-cCcc---cCcCCEEECcCCccCcc-cCc---CCcCC
Confidence 444444444 444442 2321 25677777777776642 211 25677
Q ss_pred EEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCC
Q 036216 412 SLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADN 491 (695)
Q Consensus 412 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n 491 (695)
+|++++|++.+. +. ..++|++|++++|.+.+ +|. .+++|++|++++|+++ .+|. .+++|++|++++|
T Consensus 301 ~L~l~~N~l~~i-~~---~~~~L~~L~Ls~N~l~~-lp~----~~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N 367 (454)
T 1jl5_A 301 YLNASSNEIRSL-CD---LPPSLEELNVSNNKLIE-LPA----LPPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYN 367 (454)
T ss_dssp EEECCSSCCSEE-CC---CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSS
T ss_pred EEECcCCcCCcc-cC---CcCcCCEEECCCCcccc-ccc----cCCcCCEEECCCCccc-cccc---hhhhccEEECCCC
Confidence 777777776642 21 11466666666666643 443 2455666666666555 2343 2455666666666
Q ss_pred cCcc
Q 036216 492 NLSG 495 (695)
Q Consensus 492 ~l~~ 495 (695)
++++
T Consensus 368 ~l~~ 371 (454)
T 1jl5_A 368 PLRE 371 (454)
T ss_dssp CCSS
T ss_pred CCCc
Confidence 5553
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.1e-35 Score=315.36 Aligned_cols=364 Identities=19% Similarity=0.188 Sum_probs=201.6
Q ss_pred CCCCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEE
Q 036216 2 LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHL 81 (695)
Q Consensus 2 l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 81 (695)
+++|++|++++|.+++++ .+..+++|++|++++|.+++ +| ++.+++|++|++++|.+++. + +.++++|++|
T Consensus 41 l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~--~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L 111 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITT--LD--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYL 111 (457)
T ss_dssp HTTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSC--CC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEE
T ss_pred cCCCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCe--Ec--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEE
Confidence 355666666666666554 35566666666666666655 33 55566666666666666543 2 5566666666
Q ss_pred eCCCCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEcc
Q 036216 82 GLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALA 161 (695)
Q Consensus 82 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~ 161 (695)
++++|++++. | ++.+++|++|++++|.+++. .++.+++|++|++++|+..+.++ ++.+.. |++|+++
T Consensus 112 ~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~------~~~l~~-L~~L~ls 178 (457)
T 3bz5_A 112 NCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD------VTPQTQ-LTTLDCS 178 (457)
T ss_dssp ECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCC------CTTCTT-CCEEECC
T ss_pred ECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccc------cccCCc-CCEEECC
Confidence 6666666542 2 55666666666666666542 25556666666666664333221 222233 5555555
Q ss_pred CcccccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCc
Q 036216 162 SSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQL 241 (695)
Q Consensus 162 ~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L 241 (695)
+|.+++. | ++.+++|++|++++|++++ + .+..+++|+.|++++|++++. + +..+++|
T Consensus 179 ~n~l~~l-~--l~~l~~L~~L~l~~N~l~~--------------~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L 235 (457)
T 3bz5_A 179 FNKITEL-D--VSQNKLLNRLNCDTNNITK--------------L---DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQL 235 (457)
T ss_dssp SSCCCCC-C--CTTCTTCCEEECCSSCCSC--------------C---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTC
T ss_pred CCcccee-c--cccCCCCCEEECcCCcCCe--------------e---ccccCCCCCEEECcCCccccc-C--ccccCCC
Confidence 5555552 2 4455555555555555441 1 134455555555555555442 1 4444555
Q ss_pred cEEEccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHhhcccccceeecccccccccccCccccCccceEecccc
Q 036216 242 IELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIAN 321 (695)
Q Consensus 242 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n 321 (695)
+.|++++|.+.+.. +..+++|+.|+++.+ +|+.+++++|.+.+.++ +..+++|+.|++++|
T Consensus 236 ~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n---------------~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n 296 (457)
T 3bz5_A 236 TYFDCSVNPLTELD---VSTLSKLTTLHCIQT---------------DLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHN 296 (457)
T ss_dssp SEEECCSSCCSCCC---CTTCTTCCEEECTTC---------------CCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTC
T ss_pred CEEEeeCCcCCCcC---HHHCCCCCEEeccCC---------------CCCEEECCCCccCCccc-ccccccCCEEECCCC
Confidence 55555555544432 223444444444332 34455566665554444 344566666666666
Q ss_pred cceeecCCCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCC
Q 036216 322 NFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLP 401 (695)
Q Consensus 322 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~ 401 (695)
...+.+|....+|+.+++++| ++|++|++++|.+++. + +..+++|+.|++++|++++
T Consensus 297 ~~l~~l~~~~~~L~~L~l~~~-----------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--- 353 (457)
T 3bz5_A 297 TQLYLLDCQAAGITELDLSQN-----------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--- 353 (457)
T ss_dssp TTCCEEECTTCCCSCCCCTTC-----------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB---
T ss_pred cccceeccCCCcceEechhhc-----------------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC---
Confidence 666655555555555554433 4677777777777753 2 6677777777777777764
Q ss_pred ccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEE
Q 036216 402 TSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLL 462 (695)
Q Consensus 402 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 462 (695)
++.|..|++++|.+.+. ..+..|+.+++++|.++|.+|..+.....++...
T Consensus 354 -----l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~~~~~~~~~ 404 (457)
T 3bz5_A 354 -----FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNI 404 (457)
T ss_dssp -----CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBCTTSCCCEE
T ss_pred -----ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhcccCceeec
Confidence 24556666777776654 2345566677777777777776654434444433
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=5e-35 Score=310.24 Aligned_cols=365 Identities=22% Similarity=0.191 Sum_probs=250.2
Q ss_pred CCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCCCCCchhh
Q 036216 16 HHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKW 95 (695)
Q Consensus 16 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~ 95 (695)
.......+.++++|++|++++|.+++ +| .+..+++|++|++++|.+++. | +..+++|++|++++|.+++. +
T Consensus 31 ~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~-- 101 (457)
T 3bz5_A 31 QATDTISEEQLATLTSLDCHNSSITD--MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D-- 101 (457)
T ss_dssp CTTSEEEHHHHTTCCEEECCSSCCCC--CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--
T ss_pred CcccccChhHcCCCCEEEccCCCccc--Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--
Confidence 33344467788999999999999987 55 578899999999999998864 3 88899999999999998864 3
Q ss_pred hcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcccccccchhcCC
Q 036216 96 FDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQ 175 (695)
Q Consensus 96 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~ 175 (695)
++++++|++|++++|.+++ ++ ++.+++|++|++++|++++. .++.+.. |++|++++|...+.+ .++.
T Consensus 102 ~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-------~l~~l~~-L~~L~l~~n~~~~~~--~~~~ 168 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-------DVSHNTQ-LTELDCHLNKKITKL--DVTP 168 (457)
T ss_dssp CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-------CCTTCTT-CCEEECTTCSCCCCC--CCTT
T ss_pred cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee-------ccccCCc-CCEEECCCCCccccc--cccc
Confidence 8889999999999999886 34 78888899999988887653 1223333 666666666433333 2555
Q ss_pred CCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCccEEEccCCCCCCCC
Q 036216 176 FKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRF 255 (695)
Q Consensus 176 l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 255 (695)
+++|++|++++|+++ .++ +..+++|+.|++++|.++ +.
T Consensus 169 l~~L~~L~ls~n~l~--------------~l~---l~~l~~L~~L~l~~N~l~------------------------~~- 206 (457)
T 3bz5_A 169 QTQLTTLDCSFNKIT--------------ELD---VSQNKLLNRLNCDTNNIT------------------------KL- 206 (457)
T ss_dssp CTTCCEEECCSSCCC--------------CCC---CTTCTTCCEEECCSSCCS------------------------CC-
T ss_pred CCcCCEEECCCCccc--------------eec---cccCCCCCEEECcCCcCC------------------------ee-
Confidence 556666666665554 222 344555555555555544 32
Q ss_pred CccccCCCCCCEEEcccCCCccccChHHhhcccccceeecccccccccccCccccCccceEecccccceeecCCCCCCCc
Q 036216 256 PLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLT 335 (695)
Q Consensus 256 ~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~ 335 (695)
.+..+++|++|++++|++.+ +| +..+++|+.|++++|.+.+.. ...+++|+.|+++.| +|+
T Consensus 207 --~l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~N~l~~~~--~~~l~~L~~L~l~~n-----------~L~ 267 (457)
T 3bz5_A 207 --DLNQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQT-----------DLL 267 (457)
T ss_dssp --CCTTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECTTC-----------CCS
T ss_pred --ccccCCCCCEEECcCCcccc-cC---ccccCCCCEEEeeCCcCCCcC--HHHCCCCCEEeccCC-----------CCC
Confidence 24455666666666666653 44 345566666666666666533 334556666666543 355
Q ss_pred EEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEEC
Q 036216 336 VLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHL 415 (695)
Q Consensus 336 ~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l 415 (695)
.+++++|.+.+.+|. ..+++|+.|++++|...+.+|. ..++|+.|++++| ++|++|++
T Consensus 268 ~L~l~~n~~~~~~~~------~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L 325 (457)
T 3bz5_A 268 EIDLTHNTQLIYFQA------EGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYL 325 (457)
T ss_dssp CCCCTTCTTCCEEEC------TTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEEC
T ss_pred EEECCCCccCCcccc------cccccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCEEEC
Confidence 667777776655542 2467888888888876666653 3455555555544 68889999
Q ss_pred cCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcc
Q 036216 416 RKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSG 495 (695)
Q Consensus 416 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~ 495 (695)
++|++++. + +..+++|+.|++++|++.+ ++.|..|.+++|.+.|. ..+..|+.+++++|+++|
T Consensus 326 ~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~---------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g 388 (457)
T 3bz5_A 326 NNTELTEL-D--VSHNTKLKSLSCVNAHIQD---------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTI 388 (457)
T ss_dssp TTCCCSCC-C--CTTCTTCSEEECCSSCCCB---------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEE
T ss_pred CCCccccc-c--cccCCcCcEEECCCCCCCC---------ccccccccccCCcEEec-----ceeeecCccccccCcEEE
Confidence 99998864 3 7888999999999998854 45666777888888765 345678888999999999
Q ss_pred cCChhhh
Q 036216 496 TIPNCIH 502 (695)
Q Consensus 496 ~~p~~~~ 502 (695)
.+|..+.
T Consensus 389 ~ip~~~~ 395 (457)
T 3bz5_A 389 AVSPDLL 395 (457)
T ss_dssp ECCTTCB
T ss_pred EcChhHh
Confidence 9987643
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4.6e-34 Score=305.79 Aligned_cols=343 Identities=28% Similarity=0.348 Sum_probs=183.9
Q ss_pred CCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeC
Q 036216 4 SLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGL 83 (695)
Q Consensus 4 ~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 83 (695)
++++|+++++.+..++. +..+++|++|++++|.+++ ++. +.++++|++|++++|.+.+..+ +.++++|++|++
T Consensus 47 ~l~~L~l~~~~i~~l~~--~~~l~~L~~L~Ls~n~l~~--~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L 119 (466)
T 1o6v_A 47 QVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTD--ITP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 119 (466)
T ss_dssp TCCEEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred cccEEecCCCCCccCcc--hhhhcCCCEEECCCCccCC--chh-hhccccCCEEECCCCccccChh--hcCCCCCCEEEC
Confidence 45555555555555442 4445555555555555544 222 4455555555555555553322 555555555555
Q ss_pred CCCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCc
Q 036216 84 PFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASS 163 (695)
Q Consensus 84 ~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n 163 (695)
++|.+++..+ +..+++|++|++++|.+.+ ++ .++.+++|++|++++
T Consensus 120 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~------------------------------ 165 (466)
T 1o6v_A 120 FNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFGN------------------------------ 165 (466)
T ss_dssp CSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEEE------------------------------
T ss_pred CCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecCC------------------------------
Confidence 5555553321 4555555555555555442 22 244555555555432
Q ss_pred ccccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCccE
Q 036216 164 SISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIE 243 (695)
Q Consensus 164 ~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 243 (695)
.+.+.. .+.++++|++|++++|.+. .++ .+..+++|+.|++++|.+.+..+ +..+++|++
T Consensus 166 ~~~~~~--~~~~l~~L~~L~l~~n~l~--------------~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 225 (466)
T 1o6v_A 166 QVTDLK--PLANLTTLERLDISSNKVS--------------DIS--VLAKLTNLESLIATNNQISDITP--LGILTNLDE 225 (466)
T ss_dssp SCCCCG--GGTTCTTCCEEECCSSCCC--------------CCG--GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCE
T ss_pred cccCch--hhccCCCCCEEECcCCcCC--------------CCh--hhccCCCCCEEEecCCccccccc--ccccCCCCE
Confidence 222211 2556666666666666654 121 24555666666666655543332 334445555
Q ss_pred EEccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHhhcccccceeecccccccccccCccccCccceEecccccc
Q 036216 244 LGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNF 323 (695)
Q Consensus 244 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~ 323 (695)
|++++|.+.+. ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+
T Consensus 226 L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~-~~~l------------- 286 (466)
T 1o6v_A 226 LSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNISP-LAGL------------- 286 (466)
T ss_dssp EECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCCCCGG-GTTC-------------
T ss_pred EECCCCCcccc--hhhhcCCCCCEEECCCCccccchh---hhcCCCCCEEECCCCccCcccc-ccCC-------------
Confidence 55555544432 234455555555555555542222 3445555555555555543222 3333
Q ss_pred eeecCCCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCcc
Q 036216 324 SGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTS 403 (695)
Q Consensus 324 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~ 403 (695)
++|+.|++++|.+.+..+ +..+++|+.|++++|.+++..| +..+++|++|++++|.+++. ..
T Consensus 287 --------~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~ 348 (466)
T 1o6v_A 287 --------TALTNLELNENQLEDISP------ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SS 348 (466)
T ss_dssp --------TTCSEEECCSSCCSCCGG------GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GG
T ss_pred --------CccCeEEcCCCcccCchh------hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hh
Confidence 445555555555544222 3346677777777777765544 56677777777777777643 35
Q ss_pred ccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccc
Q 036216 404 LGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFG 446 (695)
Q Consensus 404 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 446 (695)
+..+++|+.|++++|++.+..| +..+++|+.|++++|.+++
T Consensus 349 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 349 LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp GTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred hccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 6777777777777777776655 6677777777777777744
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.1e-34 Score=305.92 Aligned_cols=321 Identities=18% Similarity=0.183 Sum_probs=214.3
Q ss_pred cEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCC
Q 036216 6 VELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPF 85 (695)
Q Consensus 6 ~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 85 (695)
+.++.+++.++.+|.. + .+++++|+|++|.+++. .+..|.++++|++|+|++|.+++..|.+|.++++|++|++++
T Consensus 14 ~~v~c~~~~l~~ip~~-~--~~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEG-I--PTETRLLDLGKNRIKTL-NQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCSSCCSC-C--CTTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCcCCCC-C--CCCCcEEECCCCccceE-CHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 5678888888888763 2 35788888888888875 567788888888888888888877788888888888888888
Q ss_pred CCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCccc
Q 036216 86 NHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSI 165 (695)
Q Consensus 86 n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~ 165 (695)
|.++...+..|.++++|++|++++|.+.+..+..|.++++|++|++++|.+.+.
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------------------- 143 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYI-------------------------- 143 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEE--------------------------
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCcccee--------------------------
Confidence 888866666778888888888888888877777888888888888887776543
Q ss_pred ccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCccEEE
Q 036216 166 SGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELG 245 (695)
Q Consensus 166 ~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 245 (695)
.+..|..+++|++|++++|+++ .++...|.++++|+.|++++|.+....+..+..+++|+.|+
T Consensus 144 ---~~~~~~~l~~L~~L~l~~n~l~--------------~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 206 (477)
T 2id5_A 144 ---SHRAFSGLNSLEQLTLEKCNLT--------------SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLE 206 (477)
T ss_dssp ---CTTSSTTCTTCCEEEEESCCCS--------------SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEE
T ss_pred ---ChhhccCCCCCCEEECCCCcCc--------------ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceee
Confidence 3445677788888888888775 56666777888888888888877766655566666666666
Q ss_pred ccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHhhcccccceeecccccccccccCccccCccceEeccccccee
Q 036216 246 LRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSG 325 (695)
Q Consensus 246 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~ 325 (695)
+++|...+.++.......+|++|++++|.+. .+|...+..++
T Consensus 207 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~------------------------------------- 248 (477)
T 2id5_A 207 ISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLV------------------------------------- 248 (477)
T ss_dssp EECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCT-------------------------------------
T ss_pred CCCCccccccCcccccCccccEEECcCCccc-ccCHHHhcCcc-------------------------------------
Confidence 6655544444443333334444444444444 33333333333
Q ss_pred ecCCCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCcccc
Q 036216 326 SLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLG 405 (695)
Q Consensus 326 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~ 405 (695)
+|+.|++++|.+++..+..|..+++|++|++++|.+.+..|..|.
T Consensus 249 -----------------------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 293 (477)
T 2id5_A 249 -----------------------------------YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFR 293 (477)
T ss_dssp -----------------------------------TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBT
T ss_pred -----------------------------------ccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhc
Confidence 333333333333333334455555666666666666655555666
Q ss_pred CCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccc
Q 036216 406 SLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFG 446 (695)
Q Consensus 406 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 446 (695)
.+++|++|++++|++++..+..|..+++|++|++++|++..
T Consensus 294 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 294 GLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp TCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred CcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 66666666666666665444555666666666666666543
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=9.2e-34 Score=303.43 Aligned_cols=326 Identities=24% Similarity=0.325 Sum_probs=196.9
Q ss_pred hhCCCCCCEEEcccccceeecCCCCCCCCCccEEEccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHhhccccc
Q 036216 211 FANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQL 290 (695)
Q Consensus 211 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L 290 (695)
+..+++|++|++++|.+....+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.+. .++. +..+++|
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~-~~~~--~~~l~~L 136 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT-DIDP--LKNLTNL 136 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTTC
T ss_pred hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCC-CChH--HcCCCCC
Confidence 3444444444444444443322 4444455555555554444333 556666666666666665 3333 4556667
Q ss_pred ceeecccccccccccCccccCccceEecccccceeecCCCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccc
Q 036216 291 YLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRN 370 (695)
Q Consensus 291 ~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n 370 (695)
++|++++|.+.+ ++.+..+++|++|++.+ .+.+.. .+..+++|+.|++++|
T Consensus 137 ~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~-~~~~~~---------------------------~~~~l~~L~~L~l~~n 187 (466)
T 1o6v_A 137 NRLELSSNTISD-ISALSGLTSLQQLSFGN-QVTDLK---------------------------PLANLTTLERLDISSN 187 (466)
T ss_dssp SEEEEEEEEECC-CGGGTTCTTCSEEEEEE-SCCCCG---------------------------GGTTCTTCCEEECCSS
T ss_pred CEEECCCCccCC-ChhhccCCcccEeecCC-cccCch---------------------------hhccCCCCCEEECcCC
Confidence 777777766654 23455555566655532 221110 1223555666666666
Q ss_pred cccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCCh
Q 036216 371 ILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPS 450 (695)
Q Consensus 371 ~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 450 (695)
.+.+. ..+..+++|++|++++|.+.+..| +..+++|++|++++|++.+. ..+..+++|+.|++++|.+.+..+
T Consensus 188 ~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~- 260 (466)
T 1o6v_A 188 KVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP- 260 (466)
T ss_dssp CCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred cCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh-
Confidence 55532 235566666677776666664333 55566777777777766532 346666777777777776644333
Q ss_pred hhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCC
Q 036216 451 WFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGP 530 (695)
Q Consensus 451 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~ 530 (695)
+ ..+++|+.|++++|.+++..+ +..+++|+.|++++|++++..| +..+++
T Consensus 261 -~-~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~------------------------ 310 (466)
T 1o6v_A 261 -L-SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKN------------------------ 310 (466)
T ss_dssp -G-TTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTT------------------------
T ss_pred -h-hcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCC------------------------
Confidence 2 256777777777777765433 6677777777777777764322 333333
Q ss_pred CccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCC
Q 036216 531 GTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSV 610 (695)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 610 (695)
|+.|++++|++++..| +..+++|++|++++|++++. ..++.+++|+.|++++
T Consensus 311 ------------------------L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~ 362 (466)
T 1o6v_A 311 ------------------------LTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGH 362 (466)
T ss_dssp ------------------------CSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCS
T ss_pred ------------------------CCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCC
Confidence 3677777777776554 66777888888888877743 3577788888888888
Q ss_pred CcccccCCcCCcCCCCCCEEEcccCcCcc
Q 036216 611 NKFTGEIPQSMSSLTFLNHLNLSNNYLTG 639 (695)
Q Consensus 611 n~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 639 (695)
|++++..| +..+++|+.|++++|++++
T Consensus 363 n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 363 NQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp SCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CccCccch--hhcCCCCCEEeccCCcccC
Confidence 88876665 6777888888888888776
No 34
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=5.6e-35 Score=294.90 Aligned_cols=259 Identities=29% Similarity=0.538 Sum_probs=236.0
Q ss_pred cccceeecccccccC--CCCccccCCCCCCEEeCCC-CcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcE
Q 036216 360 MKLKFLFLDRNILQG--KLPDCWMSYQNLMALDLSN-NKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVT 436 (695)
Q Consensus 360 ~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~ls~-n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 436 (695)
.+++.|++++|.+.+ .+|..+..+++|++|++++ |.+.+.+|..|..+++|++|++++|.+.+..|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 467788888888887 7888899999999999995 8888888989999999999999999999889999999999999
Q ss_pred EEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCC-CCCEEeCCCCcCcccCChhhhhcccCcccCCCCC
Q 036216 437 LDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLA-FLQILDLADNNLSGTIPNCIHNLTAMATVNPFTG 515 (695)
Q Consensus 437 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~ 515 (695)
|++++|.+.+.+|..+. .+++|++|++++|++++.+|..+..++ +|++|++++|++++.+|..+..++ |
T Consensus 130 L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L-------- 199 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L-------- 199 (313)
T ss_dssp EECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C--------
T ss_pred EeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c--------
Confidence 99999999888888876 699999999999999989999999998 999999999999999998887664 4
Q ss_pred CcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCc
Q 036216 516 NAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPE 595 (695)
Q Consensus 516 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 595 (695)
+.|++++|++++..|..|..+++|++|++++|.+++.+|.
T Consensus 200 ----------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 239 (313)
T 1ogq_A 200 ----------------------------------------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK 239 (313)
T ss_dssp ----------------------------------------SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG
T ss_pred ----------------------------------------cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc
Confidence 8899999999999999999999999999999999977666
Q ss_pred cccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccCcCcccCCCCcccCccccccccCC-cccCCCCCCCCC
Q 036216 596 TIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSFNASCFLGN-NLCGAPLPKNCT 670 (695)
Q Consensus 596 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~iP~~~~~~~~~~~~~~~n-~l~~~~~~~~c~ 670 (695)
+..+++|+.|++++|++++.+|..+..+++|++|++++|+++|.+|...++..+....+.+| .+||.|++ .|.
T Consensus 240 -~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C~ 313 (313)
T 1ogq_A 240 -VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-ACT 313 (313)
T ss_dssp -CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CCC
T ss_pred -ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CCC
Confidence 88999999999999999999999999999999999999999999999989999999999999 69999877 573
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.1e-34 Score=307.76 Aligned_cols=317 Identities=20% Similarity=0.150 Sum_probs=153.1
Q ss_pred cEEEccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHhhcccccceeeccccccccccc-CccccCccceEeccc
Q 036216 242 IELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELT-NLTKASQLSYLSLIA 320 (695)
Q Consensus 242 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~L~~L~l~~ 320 (695)
+.++.++..+.. +|..+ .++++.|++++|.+. .++...+..+++|++|++++|.+.+..+ .+..+++|++|++++
T Consensus 14 ~~v~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFVA-VPEGI--PTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCSS-CCSCC--CTTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-CCCCC--CCCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 345555554442 33322 245666777766666 3433344556666666666666665433 455555666666665
Q ss_pred ccceeecCCC---CCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCccc
Q 036216 321 NNFSGSLPLI---SSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFT 397 (695)
Q Consensus 321 n~~~~~~~~~---~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~ 397 (695)
|.+.+..+.. +++|++|++++|.+.+..+.. |..+++|+.|++++|.+.+..+..|..+++|++|++++|.++
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 165 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYM----FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT 165 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTT----TTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhH----ccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc
Confidence 5555433222 234444444444444322221 223444444444444444444444444444444444444444
Q ss_pred ccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccc
Q 036216 398 GNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTEL 477 (695)
Q Consensus 398 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l 477 (695)
+..+..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|...+.+|...+ ...+|+.|++++|++++..+..+
T Consensus 166 ~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~ 244 (477)
T 2id5_A 166 SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHCNLTAVPYLAV 244 (477)
T ss_dssp SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTT-TTCCCSEEEEESSCCCSCCHHHH
T ss_pred ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccc-cCccccEEECcCCcccccCHHHh
Confidence 33333344444444444444444444444444444444444444444343433332 22344444444444442222333
Q ss_pred cCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccE
Q 036216 478 CDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRI 557 (695)
Q Consensus 478 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 557 (695)
..+++| +.
T Consensus 245 ~~l~~L------------------------------------------------------------------------~~ 252 (477)
T 2id5_A 245 RHLVYL------------------------------------------------------------------------RF 252 (477)
T ss_dssp TTCTTC------------------------------------------------------------------------CE
T ss_pred cCcccc------------------------------------------------------------------------Ce
Confidence 444444 45
Q ss_pred EEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccCcC
Q 036216 558 IDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYL 637 (695)
Q Consensus 558 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l 637 (695)
|++++|.+++..+..|..+++|++|+|++|++++..|..|+.+++|+.|+|++|++++..+..|..+++|++|++++|++
T Consensus 253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 253 LNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp EECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred eECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence 55555555544455555555555555555555555555555555555555555555544444455555555555555555
Q ss_pred cc
Q 036216 638 TG 639 (695)
Q Consensus 638 ~~ 639 (695)
.+
T Consensus 333 ~c 334 (477)
T 2id5_A 333 AC 334 (477)
T ss_dssp EC
T ss_pred cC
Confidence 43
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=7.6e-33 Score=289.54 Aligned_cols=309 Identities=21% Similarity=0.181 Sum_probs=196.1
Q ss_pred CCCCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEE
Q 036216 2 LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHL 81 (695)
Q Consensus 2 l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 81 (695)
++++++|+++++.++.+|...|..+++|++|++++|.+.+. .+..+..+++|++|++++|.+++..|..|.++++|++|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCccccc-ChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 46677777777777777776677777777777777777764 44567777777777777777776667777777777777
Q ss_pred eCCCCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEcc
Q 036216 82 GLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALA 161 (695)
Q Consensus 82 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~ 161 (695)
++++|.++...+..|+++++|++|++++|.+.+..+..++++++|++|++++|++.+.. .+.++. |+.++++
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------~~~l~~-L~~L~l~ 194 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-------LSLIPS-LFHANVS 194 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC-------GGGCTT-CSEEECC
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc-------cccccc-cceeecc
Confidence 77777777554455677777777777777777666667777777777777777776532 222333 6677777
Q ss_pred CcccccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCc
Q 036216 162 SSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQL 241 (695)
Q Consensus 162 ~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L 241 (695)
+|.+.+. ...++|++|++++|.+. .++. ...++|+.|++++|.+++. ..+..+++|
T Consensus 195 ~n~l~~~-----~~~~~L~~L~l~~n~l~--------------~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L 250 (390)
T 3o6n_A 195 YNLLSTL-----AIPIAVEELDASHNSIN--------------VVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGL 250 (390)
T ss_dssp SSCCSEE-----ECCSSCSEEECCSSCCC--------------EEEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTC
T ss_pred ccccccc-----CCCCcceEEECCCCeee--------------eccc---cccccccEEECCCCCCccc--HHHcCCCCc
Confidence 6666542 23346667777766664 2221 1235666666666666543 345556666
Q ss_pred cEEEccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHhhcccccceeecccccccccccCccccCccceEecccc
Q 036216 242 IELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIAN 321 (695)
Q Consensus 242 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n 321 (695)
++|++++|.+.+..|..+..+++|++|++++|.+. .+|..+ ..+++|+.|++++|.+.+.++.+..+++|++|++++|
T Consensus 251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N 328 (390)
T 3o6n_A 251 VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYG-QPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN 328 (390)
T ss_dssp SEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSS-SCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSS
T ss_pred cEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCccc-CCCCCCCEEECCCCcceecCccccccCcCCEEECCCC
Confidence 66666666666655666666666666666666665 333322 3456666666666666554445555566666666666
Q ss_pred cceeecCCCCCCCcEEEccCCcCC
Q 036216 322 NFSGSLPLISSNLTVLELSGNSLS 345 (695)
Q Consensus 322 ~~~~~~~~~~~~L~~L~l~~n~l~ 345 (695)
++.......+++|+.|++++|++.
T Consensus 329 ~i~~~~~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 329 SIVTLKLSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp CCCCCCCCTTCCCSEEECCSSCEE
T ss_pred ccceeCchhhccCCEEEcCCCCcc
Confidence 655444444455555555555544
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=5.6e-32 Score=282.96 Aligned_cols=333 Identities=17% Similarity=0.193 Sum_probs=204.2
Q ss_pred CCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCccEEEccCCCCCCC
Q 036216 175 QFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSR 254 (695)
Q Consensus 175 ~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~ 254 (695)
.+++++.|++++|.+. .+|...|..+++|++|++++|.+....+..+..+++|++|++++|.+.+.
T Consensus 43 ~l~~l~~l~l~~~~l~--------------~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 108 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR--------------KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL 108 (390)
T ss_dssp GGCCCSEEEEESCEES--------------EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC
T ss_pred ccCCceEEEecCCchh--------------hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcC
Confidence 3567788888887775 67776778888888888888887766666666666677777766666666
Q ss_pred CCccccCCCCCCEEEcccCCCccccChHHhhcccccceeecccccccccccCccccCccceEecccccceeecCCCCCCC
Q 036216 255 FPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNL 334 (695)
Q Consensus 255 ~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L 334 (695)
.|..+..+++|++|++++|.+. .+|..++..+++|++|++++|.+.+
T Consensus 109 ~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~-------------------------------- 155 (390)
T 3o6n_A 109 PPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLER-------------------------------- 155 (390)
T ss_dssp CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCB--------------------------------
T ss_pred CHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCc--------------------------------
Confidence 5655666666666666666655 4554444444444444444444332
Q ss_pred cEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEE
Q 036216 335 TVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLH 414 (695)
Q Consensus 335 ~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~ 414 (695)
..+..+..+++|++|++++|.+++. .+..+++|+.|+
T Consensus 156 ----------------------------------------~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~ 192 (390)
T 3o6n_A 156 ----------------------------------------IEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHAN 192 (390)
T ss_dssp ----------------------------------------CCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEE
T ss_pred ----------------------------------------cChhhccCCCCCCEEECCCCcCCcc---ccccccccceee
Confidence 2222333334444444444444321 122334444444
Q ss_pred CcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCc
Q 036216 415 LRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLS 494 (695)
Q Consensus 415 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~ 494 (695)
+++|.+.+. ...++|++|++++|.+. .+|.. ..++|+.|++++|.+++. ..+..+++|++|++++|+++
T Consensus 193 l~~n~l~~~-----~~~~~L~~L~l~~n~l~-~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~ 261 (390)
T 3o6n_A 193 VSYNLLSTL-----AIPIAVEELDASHNSIN-VVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELE 261 (390)
T ss_dssp CCSSCCSEE-----ECCSSCSEEECCSSCCC-EEECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred ccccccccc-----CCCCcceEEECCCCeee-ecccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCC
Confidence 444444321 12234555555555542 22221 234566666666666543 35666677777777777777
Q ss_pred ccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCcccc
Q 036216 495 GTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLT 574 (695)
Q Consensus 495 ~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~ 574 (695)
+..|..+..+++| +.|++++|++++ +|..+.
T Consensus 262 ~~~~~~~~~l~~L------------------------------------------------~~L~L~~n~l~~-~~~~~~ 292 (390)
T 3o6n_A 262 KIMYHPFVKMQRL------------------------------------------------ERLYISNNRLVA-LNLYGQ 292 (390)
T ss_dssp EEESGGGTTCSSC------------------------------------------------CEEECCSSCCCE-EECSSS
T ss_pred CcChhHccccccC------------------------------------------------CEEECCCCcCcc-cCcccC
Confidence 6666666655554 666777777764 455567
Q ss_pred CCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccCcCcccCCCCcccCcccccc
Q 036216 575 NLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSFNASC 654 (695)
Q Consensus 575 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~iP~~~~~~~~~~~~ 654 (695)
.+++|++|++++|+++ .+|..++.+++|+.|++++|.++. +| +..+++|++|++++|++.+.-.. ..+..+....
T Consensus 293 ~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~-~~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~ 367 (390)
T 3o6n_A 293 PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPA 367 (390)
T ss_dssp CCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTT
T ss_pred CCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccce-eC--chhhccCCEEEcCCCCccchhHH-HHHHHHHhhc
Confidence 7889999999999998 677778899999999999999984 44 67788999999999999864221 2334444444
Q ss_pred ccCC-cccC
Q 036216 655 FLGN-NLCG 662 (695)
Q Consensus 655 ~~~n-~l~~ 662 (695)
+.++ ..|.
T Consensus 368 ~~~~~~~c~ 376 (390)
T 3o6n_A 368 VDDADQHCK 376 (390)
T ss_dssp BCCCCSCCC
T ss_pred ccccCceec
Confidence 4444 3444
No 38
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.4e-32 Score=277.43 Aligned_cols=253 Identities=28% Similarity=0.455 Sum_probs=229.9
Q ss_pred CCCcEEEccCCcCCC--ccchhhhhhhhhccccceeeccc-ccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCC
Q 036216 332 SNLTVLELSGNSLSG--PIFHFLCYTINETMKLKFLFLDR-NILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLS 408 (695)
Q Consensus 332 ~~L~~L~l~~n~l~~--~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~ 408 (695)
..++.|++++|.+.+ .++.. +..+++|++|++++ |.+.+.+|..|..+++|++|++++|.+++..|..+..++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~----l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 125 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSS----LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGG----GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred ceEEEEECCCCCccCCcccChh----HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC
Confidence 467888888888887 56554 44689999999995 899989999999999999999999999999999999999
Q ss_pred CCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCC-CCcEEEcCCCcccccCCccccCCCCCCEEe
Q 036216 409 SLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFS-RMVLLILRSNNFDGPLPTELCDLAFLQILD 487 (695)
Q Consensus 409 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 487 (695)
+|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+. .++ +|+.|++++|++++.+|..+..++ |++|+
T Consensus 126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~ 203 (313)
T 1ogq_A 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVD 203 (313)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEE
T ss_pred CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHh-hhhhcCcEEECcCCeeeccCChHHhCCc-ccEEE
Confidence 999999999999999999999999999999999999889999887 576 999999999999999999999987 99999
Q ss_pred CCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccc
Q 036216 488 LADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSG 567 (695)
Q Consensus 488 L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~ 567 (695)
+++|++++..|..+..+++| +.|++++|++++
T Consensus 204 Ls~N~l~~~~~~~~~~l~~L------------------------------------------------~~L~L~~N~l~~ 235 (313)
T 1ogq_A 204 LSRNMLEGDASVLFGSDKNT------------------------------------------------QKIHLAKNSLAF 235 (313)
T ss_dssp CCSSEEEECCGGGCCTTSCC------------------------------------------------SEEECCSSEECC
T ss_pred CcCCcccCcCCHHHhcCCCC------------------------------------------------CEEECCCCceee
Confidence 99999998888888777666 889999999997
Q ss_pred cCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccCc-Cccc
Q 036216 568 TLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNY-LTGK 640 (695)
Q Consensus 568 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~-l~~~ 640 (695)
.+|. +..+++|++|++++|++++.+|..|+.+++|+.|++++|++++.+|.. ..+++|+.+++++|+ ++|.
T Consensus 236 ~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 236 DLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp BGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEEST
T ss_pred ecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCC
Confidence 7665 888999999999999999999999999999999999999999999987 889999999999998 6664
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.2e-31 Score=295.90 Aligned_cols=329 Identities=22% Similarity=0.209 Sum_probs=266.9
Q ss_pred CCCCCEEEcccCCCccccChHHhhcccccceeeccccccccccc-CccccCccceEecccccceeecCCC---CCCCcEE
Q 036216 262 QKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELT-NLTKASQLSYLSLIANNFSGSLPLI---SSNLTVL 337 (695)
Q Consensus 262 ~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L 337 (695)
+.+++.++++++.+. .+|..++..+++|+.|++++|.+.+..+ .+..+++|++|++++|.+.+..|.. +++|++|
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 456777788777776 6777777778888888888888877665 6777788888888888887766544 4678888
Q ss_pred EccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcC
Q 036216 338 ELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRK 417 (695)
Q Consensus 338 ~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~ 417 (695)
++++|.+++..+.. |..+++|+.|++++|.+++..|..|..+++|++|++++|.+++.. +..+++|+.|++++
T Consensus 129 ~L~~n~l~~l~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~ 201 (597)
T 3oja_B 129 VLERNDLSSLPRGI----FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSY 201 (597)
T ss_dssp ECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCS
T ss_pred EeeCCCCCCCCHHH----hccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhccc
Confidence 88888887543333 346899999999999999888888999999999999999998642 56679999999999
Q ss_pred CcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccC
Q 036216 418 NRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTI 497 (695)
Q Consensus 418 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 497 (695)
|.+.+. ....+|+.|++++|.+. .++.. ..++|+.|++++|.+++. ..+..+++|+.|++++|.+++..
T Consensus 202 n~l~~l-----~~~~~L~~L~ls~n~l~-~~~~~---~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~ 270 (597)
T 3oja_B 202 NLLSTL-----AIPIAVEELDASHNSIN-VVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIM 270 (597)
T ss_dssp SCCSEE-----ECCTTCSEEECCSSCCC-EEECS---CCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEE
T ss_pred Cccccc-----cCCchhheeeccCCccc-ccccc---cCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCC
Confidence 998743 34578999999999984 44433 357899999999999873 67899999999999999999888
Q ss_pred ChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCC
Q 036216 498 PNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLK 577 (695)
Q Consensus 498 p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~ 577 (695)
|..|..+++| +.|+|++|.+++ +|..+..++
T Consensus 271 ~~~~~~l~~L------------------------------------------------~~L~Ls~N~l~~-l~~~~~~l~ 301 (597)
T 3oja_B 271 YHPFVKMQRL------------------------------------------------ERLYISNNRLVA-LNLYGQPIP 301 (597)
T ss_dssp SGGGTTCSSC------------------------------------------------CEEECTTSCCCE-EECSSSCCT
T ss_pred HHHhcCccCC------------------------------------------------CEEECCCCCCCC-CCcccccCC
Confidence 9888887776 889999999996 577778899
Q ss_pred CCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccCcCcccCCCCcccCccccccccC
Q 036216 578 AVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSFNASCFLG 657 (695)
Q Consensus 578 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~iP~~~~~~~~~~~~~~~ 657 (695)
+|++|+|++|.++ .+|..++.+++|+.|+|++|.+++. | +..+++|++|++++|++.+..+. ..+..+....+.+
T Consensus 302 ~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~ 376 (597)
T 3oja_B 302 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDD 376 (597)
T ss_dssp TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCC
T ss_pred CCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhcccc
Confidence 9999999999999 7888899999999999999999854 3 67789999999999999876432 2345555556666
Q ss_pred C-cccCC
Q 036216 658 N-NLCGA 663 (695)
Q Consensus 658 n-~l~~~ 663 (695)
+ ..|+.
T Consensus 377 ~~~~C~~ 383 (597)
T 3oja_B 377 ADQHCKI 383 (597)
T ss_dssp CCCCCCT
T ss_pred ccccCCc
Confidence 6 67765
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=5.1e-32 Score=298.73 Aligned_cols=308 Identities=21% Similarity=0.177 Sum_probs=185.8
Q ss_pred CCCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEe
Q 036216 3 PSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLG 82 (695)
Q Consensus 3 ~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 82 (695)
++++.+++++|.+..+|+..|..+++|++|+|++|.+++. .|..|..+++|++|+|++|.+++..|..|.++++|++|+
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCC-ChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 5567777777777777766667777777777777777664 445666777777777777777766666677777777777
Q ss_pred CCCCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccC
Q 036216 83 LPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALAS 162 (695)
Q Consensus 83 L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~ 162 (695)
+++|.+++..+..|+++++|++|++++|.+.+..|..|+.+++|++|++++|.+.+.. .+.++. |+.|++++
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-------~~~l~~-L~~L~l~~ 201 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-------LSLIPS-LFHANVSY 201 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC-------GGGCTT-CSEEECCS
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC-------hhhhhh-hhhhhccc
Confidence 7777777555555677777777777777777666666777777777777777766532 122333 66666666
Q ss_pred cccccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCcc
Q 036216 163 SSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLI 242 (695)
Q Consensus 163 n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 242 (695)
|.+.+. ...+.|+.|++++|.+. .++. ...++|+.|++++|.+++. ..+..+++|+
T Consensus 202 n~l~~l-----~~~~~L~~L~ls~n~l~--------------~~~~---~~~~~L~~L~L~~n~l~~~--~~l~~l~~L~ 257 (597)
T 3oja_B 202 NLLSTL-----AIPIAVEELDASHNSIN--------------VVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLV 257 (597)
T ss_dssp SCCSEE-----ECCTTCSEEECCSSCCC--------------EEEC---SCCSCCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred Cccccc-----cCCchhheeeccCCccc--------------cccc---ccCCCCCEEECCCCCCCCC--hhhccCCCCC
Confidence 665542 23445666666666654 1211 1124566666666665542 3455555666
Q ss_pred EEEccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHhhcccccceeecccccccccccCccccCccceEeccccc
Q 036216 243 ELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANN 322 (695)
Q Consensus 243 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~ 322 (695)
.|++++|.+.+..|..+..+++|+.|++++|.+. .+|..+ ..+++|+.|++++|.+...++.+..+++|++|++++|.
T Consensus 258 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~-~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 258 EVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYG-QPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS 335 (597)
T ss_dssp EEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC-EEECSS-SCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSC
T ss_pred EEECCCCccCCCCHHHhcCccCCCEEECCCCCCC-CCCccc-ccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCC
Confidence 6666666665555555666666666666666555 233322 33555666666666655444445555555555555555
Q ss_pred ceeecCCCCCCCcEEEccCCcCC
Q 036216 323 FSGSLPLISSNLTVLELSGNSLS 345 (695)
Q Consensus 323 ~~~~~~~~~~~L~~L~l~~n~l~ 345 (695)
+.+.....+++|+.|++++|++.
T Consensus 336 l~~~~~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 336 IVTLKLSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp CCCCCCCTTCCCSEEECCSSCEE
T ss_pred CCCcChhhcCCCCEEEeeCCCCC
Confidence 55444444445555555555443
No 41
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.98 E-value=2.7e-31 Score=273.37 Aligned_cols=305 Identities=25% Similarity=0.322 Sum_probs=208.4
Q ss_pred CCCCccEEEccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHhhcccccceeecccccccccccCccccCccceE
Q 036216 237 PPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYL 316 (695)
Q Consensus 237 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L 316 (695)
.++++++|+++++.+... + .+..+++|++|++++|.+. .++. +..+++|++|++++|.+.. ++.+..+
T Consensus 42 ~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~-~~~~~~l------ 109 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITD-ISALQNL------ 109 (347)
T ss_dssp HHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCC-CGGGTTC------
T ss_pred hcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccC-chHHcCC------
Confidence 445666666666665432 2 2555666666666666655 3333 4455666666666665553 2333333
Q ss_pred ecccccceeecCCCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCcc
Q 036216 317 SLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKF 396 (695)
Q Consensus 317 ~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~ 396 (695)
++|++|++++|.+.+..+ +..+++|+.|++++|......+ .+..+++|++|++++|.+
T Consensus 110 ---------------~~L~~L~l~~n~i~~~~~------~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~ 167 (347)
T 4fmz_A 110 ---------------TNLRELYLNEDNISDISP------LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKV 167 (347)
T ss_dssp ---------------TTCSEEECTTSCCCCCGG------GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCC
T ss_pred ---------------CcCCEEECcCCcccCchh------hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCc
Confidence 445555555555543211 3357778888888776553433 377788888888888887
Q ss_pred cccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCcc
Q 036216 397 TGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTE 476 (695)
Q Consensus 397 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 476 (695)
.+..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+..+ + ..+++|++|++++|++++..+
T Consensus 168 ~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~-~~~~~L~~L~l~~n~l~~~~~-- 238 (347)
T 4fmz_A 168 KDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--V-ANMTRLNSLKIGNNKITDLSP-- 238 (347)
T ss_dssp CCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--G-GGCTTCCEEECCSSCCCCCGG--
T ss_pred CCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--h-hcCCcCCEEEccCCccCCCcc--
Confidence 74332 7778888888888888774433 7778888888888888754333 3 368888888888888875433
Q ss_pred ccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhccccc
Q 036216 477 LCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVR 556 (695)
Q Consensus 477 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 556 (695)
+..+++|++|++++|++++ + ..+..+++ |+
T Consensus 239 ~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~------------------------------------------------L~ 268 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISD-I-NAVKDLTK------------------------------------------------LK 268 (347)
T ss_dssp GTTCTTCCEEECCSSCCCC-C-GGGTTCTT------------------------------------------------CC
T ss_pred hhcCCCCCEEECCCCccCC-C-hhHhcCCC------------------------------------------------cC
Confidence 7788888888888888774 2 23333333 47
Q ss_pred EEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccCc
Q 036216 557 IIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNY 636 (695)
Q Consensus 557 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~ 636 (695)
.|++++|++++. ..+..+++|++|++++|.+++..|+.++.+++|+.|++++|++++..| +..+++|++|++++|+
T Consensus 269 ~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 269 MLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQV 344 (347)
T ss_dssp EEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC-
T ss_pred EEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhc
Confidence 888888888854 457888999999999999988888888999999999999999986655 7888999999999998
Q ss_pred Cc
Q 036216 637 LT 638 (695)
Q Consensus 637 l~ 638 (695)
++
T Consensus 345 i~ 346 (347)
T 4fmz_A 345 IK 346 (347)
T ss_dssp --
T ss_pred cc
Confidence 75
No 42
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.98 E-value=3.1e-30 Score=265.48 Aligned_cols=300 Identities=24% Similarity=0.311 Sum_probs=159.5
Q ss_pred CCCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEe
Q 036216 3 PSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLG 82 (695)
Q Consensus 3 ~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 82 (695)
++|++|+++++.+..++. +..+++|++|++++|.+++ ++. +..+++|++|++++|.++.. ..+..+++|++|+
T Consensus 44 ~~L~~L~l~~~~i~~~~~--~~~~~~L~~L~l~~n~i~~--~~~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~ 116 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQG--IEYLTNLEYLNLNGNQITD--ISP-LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELY 116 (347)
T ss_dssp TTCSEEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEE
T ss_pred ccccEEEEeCCccccchh--hhhcCCccEEEccCCcccc--chh-hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEE
Confidence 456666666666665543 5556666666666666655 333 55666666666666666532 2466666666666
Q ss_pred CCCCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccC
Q 036216 83 LPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALAS 162 (695)
Q Consensus 83 L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~ 162 (695)
+++|.+++. +. +..+++|++|++++|...... ..+..+++|++|++++|.+.+..+ +..+.. |++|++++
T Consensus 117 l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~------~~~l~~-L~~L~l~~ 186 (347)
T 4fmz_A 117 LNEDNISDI-SP-LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP------IANLTD-LYSLSLNY 186 (347)
T ss_dssp CTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG------GGGCTT-CSEEECTT
T ss_pred CcCCcccCc-hh-hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh------hccCCC-CCEEEccC
Confidence 666666543 22 566666666666666443222 235666666666666665544321 222333 55555555
Q ss_pred cccccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCcc
Q 036216 163 SSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLI 242 (695)
Q Consensus 163 n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 242 (695)
|.+.+..+ +..+++|+.|++++|.+. .++. +..+++|+.|++++|.+
T Consensus 187 n~l~~~~~--~~~l~~L~~L~l~~n~l~--------------~~~~--~~~~~~L~~L~l~~n~l--------------- 233 (347)
T 4fmz_A 187 NQIEDISP--LASLTSLHYFTAYVNQIT--------------DITP--VANMTRLNSLKIGNNKI--------------- 233 (347)
T ss_dssp SCCCCCGG--GGGCTTCCEEECCSSCCC--------------CCGG--GGGCTTCCEEECCSSCC---------------
T ss_pred Cccccccc--ccCCCccceeecccCCCC--------------CCch--hhcCCcCCEEEccCCcc---------------
Confidence 55544322 444555555555555443 1111 34444555555555444
Q ss_pred EEEccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHhhcccccceeecccccccccccCccccCccceEeccccc
Q 036216 243 ELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANN 322 (695)
Q Consensus 243 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~ 322 (695)
.+..+ +..+++|++|++++|.+. .++ .+..+++|+.|++++|.+.+. +.+..+++|++|++++|+
T Consensus 234 ---------~~~~~--~~~l~~L~~L~l~~n~l~-~~~--~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~ 298 (347)
T 4fmz_A 234 ---------TDLSP--LANLSQLTWLEIGTNQIS-DIN--AVKDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQ 298 (347)
T ss_dssp ---------CCCGG--GTTCTTCCEEECCSSCCC-CCG--GGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC
T ss_pred ---------CCCcc--hhcCCCCCEEECCCCccC-CCh--hHhcCCCcCEEEccCCccCCC-hhhcCCCCCCEEECcCCc
Confidence 43322 445555555555555554 222 134455555555555555532 344455555555555555
Q ss_pred ceeecCC---CCCCCcEEEccCCcCCCccchhhhhhhhhccccceeeccccccc
Q 036216 323 FSGSLPL---ISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQ 373 (695)
Q Consensus 323 ~~~~~~~---~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 373 (695)
+.+..+. .+++|+.|++++|++++..+ +..+++|++|++++|.++
T Consensus 299 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 299 LGNEDMEVIGGLTNLTTLFLSQNHITDIRP------LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCGGGHHHHHTCTTCSEEECCSSSCCCCGG------GGGCTTCSEESSSCC---
T ss_pred CCCcChhHhhccccCCEEEccCCccccccC------hhhhhccceeehhhhccc
Confidence 5544332 24566777777777665433 334778888888887764
No 43
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=9.4e-34 Score=304.02 Aligned_cols=373 Identities=19% Similarity=0.165 Sum_probs=225.3
Q ss_pred CCCCcEEEcCCCcCCCCCccC-CCCCCCCCEEECCCCCCCCC---CCchhhcCCCCCCEEEcCCCcCcccCCccC-CCCC
Q 036216 2 LPSLVELDLSNCQLHHFPQLP-VANFSTLTTLDLSHNQFDNS---FVPAWVFGLSRLHFLNLGYNNFQGPIPEGL-QNLT 76 (695)
Q Consensus 2 l~~L~~L~ls~~~l~~~~~~~-~~~l~~L~~L~Ls~n~i~~~---~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~ 76 (695)
.++|++|+++++.++..+... +..+++|++|++++|.+++. .++..+..+++|++|++++|.+....+..+ ..++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 467888899888887765433 67788888899988888742 146667788888888888888875433333 3344
Q ss_pred ----CCCEEeCCCCCCCC----CchhhhcCCCCCCEEEcccCcCCcccchhhc-----CCCCCCEEEccCCcCccccchh
Q 036216 77 ----SLKHLGLPFNHFSS----SVPKWFDRLTHLEHLSLSYNSLEGRIPRSMA-----RLCNLRRLYLGGAKLNQEISEI 143 (695)
Q Consensus 77 ----~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~~~~~ 143 (695)
+|++|++++|.++. .++..+..+++|++|++++|.+....+..+. ..++|++|++++|++++.....
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 68888888888874 4577788888888888888887754443332 3567888888888887765544
Q ss_pred hhhhhcccccccceEEccCcccccccchhcC-----CCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCC
Q 036216 144 LEIFSGCVSNGLESLALASSSISGHLTDQLG-----QFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLS 218 (695)
Q Consensus 144 ~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~-----~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~ 218 (695)
+...+...+. |++|++++|.+.+..+..+. ..++|++|++++|.+++... ..++. .+..+++|+
T Consensus 162 l~~~l~~~~~-L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~---------~~l~~-~l~~~~~L~ 230 (461)
T 1z7x_W 162 LASVLRAKPD-FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC---------RDLCG-IVASKASLR 230 (461)
T ss_dssp HHHHHHHCTT-CCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHH---------HHHHH-HHHHCTTCC
T ss_pred HHHHHhhCCC-CCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHH---------HHHHH-HHHhCCCcc
Confidence 4445555555 77888877777655444443 25577777777777652100 01222 455667777
Q ss_pred EEEcccccceeecCCCCCCCCCccEEEccCCCCCCCCCccccCCCCCCEEEcccCCCccc----cChHHhhcccccceee
Q 036216 219 VFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGT----FPNRLLKSASQLYLLD 294 (695)
Q Consensus 219 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~----~~~~~~~~l~~L~~L~ 294 (695)
.|++++|.+.......+ .+..+..+++|++|++++|.+++. ++.. +..+++|++|+
T Consensus 231 ~L~Ls~n~l~~~~~~~l-------------------~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~-l~~~~~L~~L~ 290 (461)
T 1z7x_W 231 ELALGSNKLGDVGMAEL-------------------CPGLLHPSSRLRTLWIWECGITAKGCGDLCRV-LRAKESLKELS 290 (461)
T ss_dssp EEECCSSBCHHHHHHHH-------------------HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH-HHHCTTCCEEE
T ss_pred EEeccCCcCChHHHHHH-------------------HHHHhcCCCCceEEECcCCCCCHHHHHHHHHH-HhhCCCcceEE
Confidence 77777766553211100 012223456777777777766532 2322 34466677777
Q ss_pred ccccccccccc-CccccCccceEecccccceeecCCCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeeccccccc
Q 036216 295 LGHNQIHGELT-NLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQ 373 (695)
Q Consensus 295 l~~n~l~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 373 (695)
+++|.+..... .+.. .+....++|+.|++++|.+++.....+...+..+++|++|++++|.++
T Consensus 291 Ls~n~i~~~~~~~l~~----------------~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 354 (461)
T 1z7x_W 291 LAGNELGDEGARLLCE----------------TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354 (461)
T ss_dssp CTTCCCHHHHHHHHHH----------------HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCH
T ss_pred CCCCCCchHHHHHHHH----------------HhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccc
Confidence 77776643221 1110 011112356666666666655444444455555666666666666665
Q ss_pred CCCCccccC-----CCCCCEEeCCCCcccc----cCCccccCCCCCcEEECcCCcce
Q 036216 374 GKLPDCWMS-----YQNLMALDLSNNKFTG----NLPTSLGSLSSLVSLHLRKNRLS 421 (695)
Q Consensus 374 ~~~~~~~~~-----~~~L~~L~ls~n~~~~----~~~~~~~~l~~L~~L~l~~n~l~ 421 (695)
+..+..+.. .++|++|++++|.+++ .+|..+..+++|++|++++|++.
T Consensus 355 ~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 355 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred cccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 433332221 4566666666666654 44555555666666666666654
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.2e-33 Score=303.29 Aligned_cols=380 Identities=19% Similarity=0.136 Sum_probs=229.1
Q ss_pred CCCCEEEccCCCcCCCceEEeeccccccccC-hhhhhCCCCCCEEEcccccceeecCCCCCCCCCccEEEccCCCCCCCC
Q 036216 177 KNLDSLDLSNNSIVGPRVLQLYLNKLHGTLS-EIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRF 255 (695)
Q Consensus 177 ~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 255 (695)
++|++|++++|+++ ..+ ...+..+++|+.|++++|.+...... .+
T Consensus 3 ~~l~~L~Ls~~~l~--------------~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~--------------------~l 48 (461)
T 1z7x_W 3 LDIQSLDIQCEELS--------------DARWAELLPLLQQCQVVRLDDCGLTEARCK--------------------DI 48 (461)
T ss_dssp EEEEEEEEESCCCC--------------HHHHHHHHHHHTTCSEEEEESSCCCHHHHH--------------------HH
T ss_pred ccceehhhhhcccC--------------chhHHHHHhhcCCccEEEccCCCCCHHHHH--------------------HH
Confidence 45777788777765 222 11256677777777777665432110 23
Q ss_pred CccccCCCCCCEEEcccCCCccccChHHhhccc----ccceeeccccccccc-----ccCccccCccceEecccccceee
Q 036216 256 PLWLYSQKDLQFLDLFNSGISGTFPNRLLKSAS----QLYLLDLGHNQIHGE-----LTNLTKASQLSYLSLIANNFSGS 326 (695)
Q Consensus 256 ~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~----~L~~L~l~~n~l~~~-----~~~~~~~~~L~~L~l~~n~~~~~ 326 (695)
+..+..+++|++|++++|.+.+..+..++..++ +|++|++++|.+... ...+..+++|++|++++|.+.+.
T Consensus 49 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 128 (461)
T 1z7x_W 49 SSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA 128 (461)
T ss_dssp HHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHH
T ss_pred HHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchH
Confidence 344556667777777777766544545555555 577777777776631 22455566777777777766532
Q ss_pred cC--------CCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCcccc-----CCCCCCEEeCCC
Q 036216 327 LP--------LISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWM-----SYQNLMALDLSN 393 (695)
Q Consensus 327 ~~--------~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-----~~~~L~~L~ls~ 393 (695)
.+ ...++|++|++++|.+++.....+...+..+++|++|++++|.+.+..+..+. ..++|++|++++
T Consensus 129 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 208 (461)
T 1z7x_W 129 GLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLES 208 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccC
Confidence 11 11346788888888777666556666666777888888888776644333332 245777888887
Q ss_pred Cccccc----CCccccCCCCCcEEECcCCcceeeC-----CccccCCCCCcEEEcCCCccccc----CChhhhhcCCCCc
Q 036216 394 NKFTGN----LPTSLGSLSSLVSLHLRKNRLSGTI-----PILLKNCTSLVTLDVGENEVFGN----IPSWFGERFSRMV 460 (695)
Q Consensus 394 n~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~~l~~L~ 460 (695)
|.+++. ++..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+. ++..+. .+++|+
T Consensus 209 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~ 287 (461)
T 1z7x_W 209 CGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR-AKESLK 287 (461)
T ss_dssp SCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH-HCTTCC
T ss_pred CCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHh-hCCCcc
Confidence 777642 3555666777777777777765432 22233467777777777776443 344443 467777
Q ss_pred EEEcCCCcccccCCcccc-----CCCCCCEEeCCCCcCccc----CChhhhhcccCcccCCCCCCcccccCCCCCCCCCC
Q 036216 461 LLILRSNNFDGPLPTELC-----DLAFLQILDLADNNLSGT----IPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPG 531 (695)
Q Consensus 461 ~L~l~~n~~~~~~~~~l~-----~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~ 531 (695)
+|++++|.+.+..+..+. ..++|++|++++|.+++. ++..+..++
T Consensus 288 ~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-------------------------- 341 (461)
T 1z7x_W 288 ELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR-------------------------- 341 (461)
T ss_dssp EEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCS--------------------------
T ss_pred eEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCC--------------------------
Confidence 777777776543322222 225777777777777643 222233333
Q ss_pred ccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccC-----CCCCCEEeccCCcccc----cCCccccCcCC
Q 036216 532 TVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTN-----LKAVQSLNLSYNIFTG----RIPETIGTMRS 602 (695)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~-----l~~L~~L~Ls~n~l~~----~~p~~~~~l~~ 602 (695)
.|+.|++++|.+++..+..+.. .++|++|++++|.+++ .+|..+..+++
T Consensus 342 ----------------------~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~ 399 (461)
T 1z7x_W 342 ----------------------FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS 399 (461)
T ss_dssp ----------------------SCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCC
T ss_pred ----------------------CccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCC
Confidence 3367777777776554443332 5677777777777775 56667777777
Q ss_pred CCEEECCCCcccccCCcCC-----cCCCCCCEEEcccCcCcc
Q 036216 603 LESIDFSVNKFTGEIPQSM-----SSLTFLNHLNLSNNYLTG 639 (695)
Q Consensus 603 L~~L~Ls~n~l~~~~p~~l-----~~l~~L~~L~ls~N~l~~ 639 (695)
|+.|++++|++++.....+ .....|+.|++.++.+..
T Consensus 400 L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 400 LRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp CCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred ccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 7777777777764311111 123456666666665553
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.4e-29 Score=258.39 Aligned_cols=222 Identities=20% Similarity=0.227 Sum_probs=130.2
Q ss_pred hccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCccee--eCCccccCCCCCc
Q 036216 358 ETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSG--TIPILLKNCTSLV 435 (695)
Q Consensus 358 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~ 435 (695)
.+++|++|++++|.++ .+|..+. ++|++|++++|.+.+..+..|..+++|++|++++|.+.. ..+..+..+ +|+
T Consensus 100 ~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~ 175 (332)
T 2ft3_A 100 PLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLN 175 (332)
T ss_dssp TCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCS
T ss_pred CcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccC
Confidence 3556666666666655 3333332 566666666666665444556666666666666666642 445555555 666
Q ss_pred EEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCC
Q 036216 436 TLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTG 515 (695)
Q Consensus 436 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~ 515 (695)
.|++++|.+. .+|..+ .++|++|++++|++.+..+..+..+++|++|++++|++++..+..+..+++|
T Consensus 176 ~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-------- 243 (332)
T 2ft3_A 176 YLRISEAKLT-GIPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL-------- 243 (332)
T ss_dssp CCBCCSSBCS-SCCSSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTC--------
T ss_pred EEECcCCCCC-ccCccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCC--------
Confidence 6666666663 344433 2566666666666665555666666666666666666665444455544444
Q ss_pred CcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCc
Q 036216 516 NAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPE 595 (695)
Q Consensus 516 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 595 (695)
+.|++++|+++ .+|..+..+++|++|++++|++++..+.
T Consensus 244 ----------------------------------------~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~ 282 (332)
T 2ft3_A 244 ----------------------------------------RELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVN 282 (332)
T ss_dssp ----------------------------------------CEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTT
T ss_pred ----------------------------------------CEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChh
Confidence 56666666666 5666666666666666666666655555
Q ss_pred cccCc------CCCCEEECCCCccc--ccCCcCCcCCCCCCEEEcccCc
Q 036216 596 TIGTM------RSLESIDFSVNKFT--GEIPQSMSSLTFLNHLNLSNNY 636 (695)
Q Consensus 596 ~~~~l------~~L~~L~Ls~n~l~--~~~p~~l~~l~~L~~L~ls~N~ 636 (695)
.|... .+|+.|++++|.+. +..|.+|..+++|+.+++++|+
T Consensus 283 ~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 283 DFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred HccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 55432 45666666666665 4555666666666666666663
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1e-28 Score=251.98 Aligned_cols=267 Identities=20% Similarity=0.196 Sum_probs=169.9
Q ss_pred CCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeC
Q 036216 4 SLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGL 83 (695)
Q Consensus 4 ~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 83 (695)
++++++++++.++.+|... .+++++|++++|.+++. .+..+.++++|++|++++|.+++..|..|.++++|++|++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~---~~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL---PPDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC---CTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCccccCccC---CCCCeEEECCCCcCCEe-ChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 5677777777777776532 25677788888777764 4446777777888888877777666777777778888888
Q ss_pred CCCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCcc--ccchhhhhhhcccccccceEEcc
Q 036216 84 PFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQ--EISEILEIFSGCVSNGLESLALA 161 (695)
Q Consensus 84 ~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~~~~~~~~L~~L~L~ 161 (695)
++|.++ .+|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.+.. ..+. .+..+.. |++|+++
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~~~l~~-L~~L~l~ 179 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG----AFQGMKK-LSYIRIA 179 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTT----GGGGCTT-CCEEECC
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChh----hccCCCC-cCEEECC
Confidence 877777 4444443 677778887777776666677777777777777777643 2222 3344444 6666666
Q ss_pred CcccccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCc
Q 036216 162 SSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQL 241 (695)
Q Consensus 162 ~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L 241 (695)
+|.++.. |..+. ++|++|++++|+++ .++...|.++++|+.|++++|.+....+..+..+++|
T Consensus 180 ~n~l~~l-~~~~~--~~L~~L~l~~n~l~--------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 242 (330)
T 1xku_A 180 DTNITTI-PQGLP--PSLTELHLDGNKIT--------------KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL 242 (330)
T ss_dssp SSCCCSC-CSSCC--TTCSEEECTTSCCC--------------EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTC
T ss_pred CCccccC-Ccccc--ccCCEEECCCCcCC--------------ccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCC
Confidence 6666653 22222 56666666666664 3433456666666666666666666655566666666
Q ss_pred cEEEccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHhhc------ccccceeeccccccc
Q 036216 242 IELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKS------ASQLYLLDLGHNQIH 301 (695)
Q Consensus 242 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~------l~~L~~L~l~~n~l~ 301 (695)
++|++++|.+. .+|.++..+++|++|++++|.++ .++...+.. .+.++.+++++|.+.
T Consensus 243 ~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~-~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 243 RELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp CEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC-CCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred CEEECCCCcCc-cCChhhccCCCcCEEECCCCcCC-ccChhhcCCcccccccccccceEeecCccc
Confidence 66666666665 44555666666666666666665 343333221 244555555555543
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=8.4e-29 Score=252.54 Aligned_cols=267 Identities=16% Similarity=0.231 Sum_probs=181.2
Q ss_pred ccceEecccccceeecCCCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeC
Q 036216 312 QLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDL 391 (695)
Q Consensus 312 ~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 391 (695)
+++.++++++.+.......++.++.|++++|.+++..+. .+..+++|++|++++|.+++..|..|..+++|++|++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDG----DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTT----TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChh----hhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 344455554444433223345677777777776654332 2335777777888777777666777777778888888
Q ss_pred CCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccc--cCChhhhhcCCCCcEEEcCCCcc
Q 036216 392 SNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFG--NIPSWFGERFSRMVLLILRSNNF 469 (695)
Q Consensus 392 s~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~~l~~L~~L~l~~n~~ 469 (695)
++|.++ .+|..+. ++|++|++++|++.+..+..+..+++|++|++++|.+.. ..+..+. .+++|+.|++++|.+
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~L~~L~l~~n~l 183 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ-GMKKLSYIRIADTNI 183 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGG-GCTTCCEEECCSSCC
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhcc-CCCCcCEEECCCCcc
Confidence 887777 4454443 677888888887776666667777788888888777642 4444443 677778888877777
Q ss_pred cccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhh
Q 036216 470 DGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYN 549 (695)
Q Consensus 470 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (695)
+. +|..+. ++|++|++++|++++..|..+..+++|
T Consensus 184 ~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L------------------------------------------ 218 (330)
T 1xku_A 184 TT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNL------------------------------------------ 218 (330)
T ss_dssp CS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTC------------------------------------------
T ss_pred cc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCC------------------------------------------
Confidence 63 444433 677788888887776666666665555
Q ss_pred hhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcC------
Q 036216 550 EILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSS------ 623 (695)
Q Consensus 550 ~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~------ 623 (695)
+.|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++++..+..|..
T Consensus 219 ------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~ 291 (330)
T 1xku_A 219 ------AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTK 291 (330)
T ss_dssp ------CEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTT
T ss_pred ------CEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccc
Confidence 67777777777766667777777777777777777 66777777777777777777777655555543
Q ss_pred CCCCCEEEcccCcCc
Q 036216 624 LTFLNHLNLSNNYLT 638 (695)
Q Consensus 624 l~~L~~L~ls~N~l~ 638 (695)
.+.++.+++++|++.
T Consensus 292 ~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 292 KASYSGVSLFSNPVQ 306 (330)
T ss_dssp SCCCSEEECCSSSSC
T ss_pred cccccceEeecCccc
Confidence 356777777777775
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=5.2e-29 Score=254.20 Aligned_cols=285 Identities=20% Similarity=0.201 Sum_probs=140.5
Q ss_pred CCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeC
Q 036216 4 SLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGL 83 (695)
Q Consensus 4 ~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 83 (695)
++++++++++.++.+|... .++|++|++++|.++.. .|..+.++++|++|++++|.+++..|..|.++++|++|++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI---SPDTTLLDLQNNDISEL-RKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC---CTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCccccCCCC---CCCCeEEECCCCcCCcc-CHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 3555555555555555422 24555555555555543 3344555555555555555555555555555555555555
Q ss_pred CCCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCc
Q 036216 84 PFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASS 163 (695)
Q Consensus 84 ~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n 163 (695)
++|.++ .+|..+. ++|++|++++|.+.+..+..|.++++|++|++++|.+..
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~------------------------- 161 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN------------------------- 161 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG-------------------------
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc-------------------------
Confidence 555555 2333332 455555555555554444445555555555555555532
Q ss_pred ccccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCccE
Q 036216 164 SISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIE 243 (695)
Q Consensus 164 ~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 243 (695)
.+..+..+..+ +|++|++++|+++ .+|... .++|+.|++++|.+....+..+..+++|+.
T Consensus 162 --~~~~~~~~~~l-~L~~L~l~~n~l~--------------~l~~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~ 221 (332)
T 2ft3_A 162 --SGFEPGAFDGL-KLNYLRISEAKLT--------------GIPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYR 221 (332)
T ss_dssp --GGSCTTSSCSC-CCSCCBCCSSBCS--------------SCCSSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSC
T ss_pred --CCCCcccccCC-ccCEEECcCCCCC--------------ccCccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCE
Confidence 11233344444 4555555555443 222211 134555555555555444445555555555
Q ss_pred EEccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHhhcccccceeeccccccccccc-Cccc------cCccceE
Q 036216 244 LGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELT-NLTK------ASQLSYL 316 (695)
Q Consensus 244 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~------~~~L~~L 316 (695)
|++++|.+.+..+.++..+++|++|++++|.+. .+|..+ ..+++|+.|++++|.+++..+ .+.. ...|+.|
T Consensus 222 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l-~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L 299 (332)
T 2ft3_A 222 LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGL-PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGI 299 (332)
T ss_dssp CBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTG-GGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEE
T ss_pred EECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhh-hcCccCCEEECCCCCCCccChhHccccccccccccccce
Confidence 555555555554445555555555555555555 455442 345555555555555554332 1111 2445566
Q ss_pred ecccccce--eecCCC---CCCCcEEEccCC
Q 036216 317 SLIANNFS--GSLPLI---SSNLTVLELSGN 342 (695)
Q Consensus 317 ~l~~n~~~--~~~~~~---~~~L~~L~l~~n 342 (695)
++.+|++. +..+.. +++|+.+++++|
T Consensus 300 ~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 300 SLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp ECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred EeecCcccccccCcccccccchhhhhhcccc
Confidence 66666554 222221 345666666655
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=3.6e-28 Score=250.27 Aligned_cols=277 Identities=18% Similarity=0.191 Sum_probs=214.3
Q ss_pred CCCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEe
Q 036216 3 PSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLG 82 (695)
Q Consensus 3 ~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 82 (695)
+.....+++++.++.+|.... ++|++|++++|.+++. .+..+.++++|++|++++|.+++..+..|.++++|++|+
T Consensus 31 ~~~~~c~~~~~~l~~iP~~~~---~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 31 DRNGICKGSSGSLNSIPSGLT---EAVKSLDLSNNRITYI-SNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp CTTSEEECCSTTCSSCCTTCC---TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCeEeeCCCCCccccccccc---ccCcEEECCCCcCccc-CHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 455668999999999987433 5899999999999874 445788999999999999999988888999999999999
Q ss_pred CCCCCCCCCchhhhcCCCCCCEEEcccCcCCcccc-hhhcCCCCCCEEEccCCc-CccccchhhhhhhcccccccceEEc
Q 036216 83 LPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIP-RSMARLCNLRRLYLGGAK-LNQEISEILEIFSGCVSNGLESLAL 160 (695)
Q Consensus 83 L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~~L~~L~L 160 (695)
+++|.+++..+..|+++++|++|++++|.++...+ ..+.++++|++|++++|. +....+. .++.+.. |++|++
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~----~~~~l~~-L~~L~l 181 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK----DFAGLTF-LEELEI 181 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT----TTTTCCE-EEEEEE
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHH----HccCCCC-CCEEEC
Confidence 99999997777779999999999999999995433 478999999999999994 6555444 4555666 999999
Q ss_pred cCcccccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCC---C
Q 036216 161 ASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWI---P 237 (695)
Q Consensus 161 ~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~---~ 237 (695)
++|.+.+..|..+..+++|++|++++|.+. .++...+..+++|+.|++++|.+.+.....+. .
T Consensus 182 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~--------------~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~ 247 (353)
T 2z80_A 182 DASDLQSYEPKSLKSIQNVSHLILHMKQHI--------------LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGET 247 (353)
T ss_dssp EETTCCEECTTTTTTCSEEEEEEEECSCST--------------THHHHHHHHTTTEEEEEEESCBCTTCCCC------C
T ss_pred CCCCcCccCHHHHhccccCCeecCCCCccc--------------cchhhhhhhcccccEEECCCCccccccccccccccc
Confidence 999999988999999999999999999885 66666677899999999999988765444332 2
Q ss_pred CCCccEEEccCCCCCC----CCCccccCCCCCCEEEcccCCCccccChHHhhcccccceeeccccccccc
Q 036216 238 PFQLIELGLRSCDVGS----RFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGE 303 (695)
Q Consensus 238 ~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 303 (695)
...++.++++++.+.+ .+|.++..+++|++|++++|.++ .+|..++..+++|+.|++++|.+.+.
T Consensus 248 ~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 248 NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 3455666666665543 24455556666666666666665 55655555566666666666655543
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=1.8e-29 Score=279.80 Aligned_cols=258 Identities=18% Similarity=0.171 Sum_probs=146.5
Q ss_pred chhhcCCCCCCEEEcCCCcCc---ccCCccCC------------CCCCCCEEeCCCCCCCCCchhhhcC-CC-CCCEEEc
Q 036216 45 PAWVFGLSRLHFLNLGYNNFQ---GPIPEGLQ------------NLTSLKHLGLPFNHFSSSVPKWFDR-LT-HLEHLSL 107 (695)
Q Consensus 45 ~~~~~~l~~L~~L~Ls~n~i~---~~~~~~~~------------~l~~L~~L~L~~n~l~~~~p~~~~~-l~-~L~~L~L 107 (695)
+..+..+++|++|+++++... +..|..+. .+++|++|+|++|.+++..+..+.. ++ +|++|++
T Consensus 66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L 145 (592)
T 3ogk_B 66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKL 145 (592)
T ss_dssp HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEE
T ss_pred HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEEC
Confidence 334456666777777665321 12222222 5677777777777766555555554 23 3777777
Q ss_pred ccCcC-Cc-ccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcccc----cccchhcCCCCCCCE
Q 036216 108 SYNSL-EG-RIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSIS----GHLTDQLGQFKNLDS 181 (695)
Q Consensus 108 s~n~l-~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~----~~~~~~l~~l~~L~~ 181 (695)
++|.. .. .++.....+++|++|++++|.+.+....++......++. |++|++++|.+. +.++..+.++++|++
T Consensus 146 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~-L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~ 224 (592)
T 3ogk_B 146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTS-LEVLNFYMTEFAKISPKDLETIARNCRSLVS 224 (592)
T ss_dssp ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCC-CCEEECTTCCCSSCCHHHHHHHHHHCTTCCE
T ss_pred cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCC-ccEEEeeccCCCccCHHHHHHHHhhCCCCcE
Confidence 77651 11 122233467777777777777655543333334444554 777777777765 233444566777888
Q ss_pred EEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccce---eecCCCCCCCCCccEEEccCCCCCCCCCcc
Q 036216 182 LDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLT---LKVKRDWIPPFQLIELGLRSCDVGSRFPLW 258 (695)
Q Consensus 182 L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 258 (695)
|++++|.+. .++. .+.++++|+.+.++..... ......+..+++|+.++++++. ...+|..
T Consensus 225 L~L~~~~~~--------------~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~ 288 (592)
T 3ogk_B 225 VKVGDFEIL--------------ELVG-FFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPIL 288 (592)
T ss_dssp EECSSCBGG--------------GGHH-HHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGG
T ss_pred EeccCccHH--------------HHHH-HHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHH
Confidence 887777664 3442 5677777777777653222 1222344556667777766642 2345556
Q ss_pred ccCCCCCCEEEcccCCCccccChHHhhcccccceeecccccccccccCc-cccCccceEecc
Q 036216 259 LYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNL-TKASQLSYLSLI 319 (695)
Q Consensus 259 l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~L~~L~l~ 319 (695)
+..+++|++|++++|.+.+.....++..+++|+.|+++++...+.++.+ ..+++|++|+++
T Consensus 289 ~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 289 FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp GGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred HhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEee
Confidence 6666777777777776654444444566677777777633222222222 334556666665
No 51
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=4.2e-28 Score=246.02 Aligned_cols=227 Identities=18% Similarity=0.234 Sum_probs=190.2
Q ss_pred ccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEE
Q 036216 359 TMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLD 438 (695)
Q Consensus 359 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 438 (695)
.+.++.|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+. .+|..+..+++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 367788888888887 66777777888888888888888 77878888888888888888888 6777888888888888
Q ss_pred cCCCcccccCChhhh--------hcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCccc
Q 036216 439 VGENEVFGNIPSWFG--------ERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATV 510 (695)
Q Consensus 439 l~~n~~~~~~~~~~~--------~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l 510 (695)
+++|.+.+.+|..+. ..+++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|..+..+++|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L--- 231 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKL--- 231 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTC---
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCC---
Confidence 888877788887653 14888999999999888 77888888999999999999988 466666666655
Q ss_pred CCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCccc
Q 036216 511 NPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFT 590 (695)
Q Consensus 511 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 590 (695)
++|++++|++.+.+|..++.+++|++|+|++|.+.
T Consensus 232 ---------------------------------------------~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~ 266 (328)
T 4fcg_A 232 ---------------------------------------------EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL 266 (328)
T ss_dssp ---------------------------------------------CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTC
T ss_pred ---------------------------------------------CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCch
Confidence 78889999988889988999999999999999888
Q ss_pred ccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccCcCc
Q 036216 591 GRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLT 638 (695)
Q Consensus 591 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~ 638 (695)
+.+|..++++++|+.|+|++|++.+.+|+.+.++++|+.+++..+.+.
T Consensus 267 ~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 267 LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred hhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 899988999999999999999999899999999999999999877654
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.7e-27 Score=240.12 Aligned_cols=234 Identities=21% Similarity=0.211 Sum_probs=192.3
Q ss_pred cccceeecccccccCCCCccccCCCCCCEEeCCCCccccc--CCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEE
Q 036216 360 MKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGN--LPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTL 437 (695)
Q Consensus 360 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 437 (695)
+++++|++++|.++...+..|..+++|++|++++|.+... .+..+..+++|++|++++|.+. .+|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence 4677777777777755455577888888888888888732 2556667888999999999887 456668888999999
Q ss_pred EcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcc-cCChhhhhcccCcccCCCCCC
Q 036216 438 DVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSG-TIPNCIHNLTAMATVNPFTGN 516 (695)
Q Consensus 438 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~l~~~~~~ 516 (695)
++++|.+.+..+...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ ..|..+..+++|
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L--------- 177 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL--------- 177 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC---------
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCC---------
Confidence 9999988554442333478899999999999988888888899999999999999886 467666666555
Q ss_pred cccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCcc
Q 036216 517 AIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPET 596 (695)
Q Consensus 517 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 596 (695)
++|++++|++++..|..+..+++|++|++++|++++..+..
T Consensus 178 ---------------------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 218 (306)
T 2z66_A 178 ---------------------------------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 218 (306)
T ss_dssp ---------------------------------------CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGG
T ss_pred ---------------------------------------CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhh
Confidence 78899999999888899999999999999999999777778
Q ss_pred ccCcCCCCEEECCCCcccccCCcCCcCCC-CCCEEEcccCcCcccCC
Q 036216 597 IGTMRSLESIDFSVNKFTGEIPQSMSSLT-FLNHLNLSNNYLTGKIP 642 (695)
Q Consensus 597 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~ls~N~l~~~iP 642 (695)
++.+++|+.|++++|++++..|..+..++ +|++|++++|++++..+
T Consensus 219 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 219 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp GTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred ccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence 99999999999999999999999999984 99999999999987543
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=2.6e-28 Score=251.32 Aligned_cols=275 Identities=18% Similarity=0.178 Sum_probs=207.8
Q ss_pred EecccccceeecCCCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCc
Q 036216 316 LSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNK 395 (695)
Q Consensus 316 L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~ 395 (695)
.+.+++.++......++++++|++++|.+++..+ ..+..+++|+.|++++|.+++..+..|..+++|++|++++|.
T Consensus 36 c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISN----SDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred eeCCCCCcccccccccccCcEEECCCCcCcccCH----HHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 3444444443333334567777777777764332 234458888889999888887777788888999999999999
Q ss_pred ccccCCccccCCCCCcEEECcCCcceeeCC-ccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCC
Q 036216 396 FTGNLPTSLGSLSSLVSLHLRKNRLSGTIP-ILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLP 474 (695)
Q Consensus 396 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 474 (695)
+++..+..|..+++|++|++++|++.+..+ ..+..+++|++|++++|...+.++...+..+++|++|++++|++.+..|
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 191 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP 191 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH
Confidence 886555558888999999999998884443 4788889999999998853344443333478889999999999988888
Q ss_pred ccccCCCCCCEEeCCCCcCcccCChh-hhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcc
Q 036216 475 TELCDLAFLQILDLADNNLSGTIPNC-IHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILN 553 (695)
Q Consensus 475 ~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (695)
..+..+++|++|++++|++. .+|.. +..+ +
T Consensus 192 ~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~------------------------------------------------~ 222 (353)
T 2z80_A 192 KSLKSIQNVSHLILHMKQHI-LLLEIFVDVT------------------------------------------------S 222 (353)
T ss_dssp TTTTTCSEEEEEEEECSCST-THHHHHHHHT------------------------------------------------T
T ss_pred HHHhccccCCeecCCCCccc-cchhhhhhhc------------------------------------------------c
Confidence 88899999999999999886 33332 2233 3
Q ss_pred cccEEEcCCccccccCCcccc---CCCCCCEEeccCCcccc----cCCccccCcCCCCEEECCCCcccccCCcC-CcCCC
Q 036216 554 LVRIIDFSKNLFSGTLPMGLT---NLKAVQSLNLSYNIFTG----RIPETIGTMRSLESIDFSVNKFTGEIPQS-MSSLT 625 (695)
Q Consensus 554 ~l~~L~Ls~n~l~~~~p~~l~---~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~ 625 (695)
.|+.|++++|++++..+..+. ..+.++.++++++.+.+ .+|+.++.+++|+.|++++|+++ .+|.. |..++
T Consensus 223 ~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~ 301 (353)
T 2z80_A 223 SVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLT 301 (353)
T ss_dssp TEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCT
T ss_pred cccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCC
Confidence 448899999999976655443 46778899999988875 47888999999999999999999 56665 58999
Q ss_pred CCCEEEcccCcCcccCCCC
Q 036216 626 FLNHLNLSNNYLTGKIPSS 644 (695)
Q Consensus 626 ~L~~L~ls~N~l~~~iP~~ 644 (695)
+|++|++++|++.+..|..
T Consensus 302 ~L~~L~L~~N~~~~~~~~l 320 (353)
T 2z80_A 302 SLQKIWLHTNPWDCSCPRI 320 (353)
T ss_dssp TCCEEECCSSCBCCCHHHH
T ss_pred CCCEEEeeCCCccCcCCCc
Confidence 9999999999999988753
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=6.3e-27 Score=235.98 Aligned_cols=249 Identities=24% Similarity=0.224 Sum_probs=188.8
Q ss_pred cEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCccc--CCccCCCCCCCCEEeC
Q 036216 6 VELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGP--IPEGLQNLTSLKHLGL 83 (695)
Q Consensus 6 ~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~L 83 (695)
+.++++++.++.+|... .++|++|++++|.++.. .+..+.++++|++|++++|.++.. .+..+..+++|++|++
T Consensus 10 ~~l~c~~~~l~~ip~~~---~~~l~~L~L~~n~l~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI---PSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCSSCCSCC---CTTCCEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCcccCCCCC---CCCCCEEECCCCccCcc-CHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 57888888899888733 36899999999999873 334467899999999999988743 2566778899999999
Q ss_pred CCCCCCCCchhhhcCCCCCCEEEcccCcCCcccc-hhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccC
Q 036216 84 PFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIP-RSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALAS 162 (695)
Q Consensus 84 ~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~ 162 (695)
++|.+. .+|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+. .+..+.. |++|++++
T Consensus 86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~-L~~L~l~~ 159 (306)
T 2z66_A 86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG----IFNGLSS-LEVLKMAG 159 (306)
T ss_dssp CSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTT----TTTTCTT-CCEEECTT
T ss_pred CCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchh----hcccCcC-CCEEECCC
Confidence 999888 467778889999999999998886544 5788889999999999988776655 4445555 88888888
Q ss_pred ccccc-ccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCc
Q 036216 163 SSISG-HLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQL 241 (695)
Q Consensus 163 n~~~~-~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L 241 (695)
|.+.+ ..|..+..+++|++|++++|+++ .+++..|..+++|+.|++++|.+.......+..+++|
T Consensus 160 n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~--------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 225 (306)
T 2z66_A 160 NSFQENFLPDIFTELRNLTFLDLSQCQLE--------------QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 225 (306)
T ss_dssp CEEGGGEECSCCTTCTTCCEEECTTSCCC--------------EECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTC
T ss_pred CccccccchhHHhhCcCCCEEECCCCCcC--------------CcCHHHhcCCCCCCEEECCCCccCccChhhccCcccC
Confidence 88776 56777778888888888888775 4444467777778888888777776665566667777
Q ss_pred cEEEccCCCCCCCCCccccCCC-CCCEEEcccCCCccc
Q 036216 242 IELGLRSCDVGSRFPLWLYSQK-DLQFLDLFNSGISGT 278 (695)
Q Consensus 242 ~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~i~~~ 278 (695)
+.|++++|.+.+..+..+..++ +|++|++++|.+.+.
T Consensus 226 ~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 226 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred CEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 7777777777776666666663 677777777776543
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=4.4e-27 Score=234.41 Aligned_cols=227 Identities=20% Similarity=0.195 Sum_probs=137.4
Q ss_pred eeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCc
Q 036216 364 FLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENE 443 (695)
Q Consensus 364 ~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 443 (695)
.++.+++.++ .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.
T Consensus 15 ~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 15 TTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp EEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred EEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 3444444444 333322 3456666666666665555556666666666666666665556666666666666666665
Q ss_pred ccccC-ChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccC
Q 036216 444 VFGNI-PSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSF 522 (695)
Q Consensus 444 ~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~ 522 (695)
..+.+ |..+ ..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|
T Consensus 92 ~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--------------- 155 (285)
T 1ozn_A 92 QLRSVDPATF-HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL--------------- 155 (285)
T ss_dssp TCCCCCTTTT-TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC---------------
T ss_pred CccccCHHHh-cCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCc---------------
Confidence 22333 3333 256666666666666666556666666666666666666664444445444443
Q ss_pred CCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCC
Q 036216 523 PLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRS 602 (695)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 602 (695)
+.|++++|++++..+..|..+++|++|++++|.+++..|..|+.+++
T Consensus 156 ---------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 202 (285)
T 1ozn_A 156 ---------------------------------THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202 (285)
T ss_dssp ---------------------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred ---------------------------------cEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCccc
Confidence 56666666666555555666677777777777776666666666777
Q ss_pred CCEEECCCCcccccCCcCCcCCCCCCEEEcccCcCcccCC
Q 036216 603 LESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIP 642 (695)
Q Consensus 603 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~iP 642 (695)
|+.|++++|++++..+..+..+++|++|++++|++.+..+
T Consensus 203 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp CCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred ccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence 7777777777765544556666777777777776665444
No 56
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=3.2e-29 Score=277.75 Aligned_cols=412 Identities=14% Similarity=0.043 Sum_probs=241.5
Q ss_pred CCccCCCCCCCCCEEECCCCCCC---CCCCc------------hhhcCCCCCCEEEcCCCcCcccCCccCCC-CC-CCCE
Q 036216 18 FPQLPVANFSTLTTLDLSHNQFD---NSFVP------------AWVFGLSRLHFLNLGYNNFQGPIPEGLQN-LT-SLKH 80 (695)
Q Consensus 18 ~~~~~~~~l~~L~~L~Ls~n~i~---~~~~~------------~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~-~L~~ 80 (695)
.+...+..+++|++|+++++... +. +| .....+++|++|+|++|.+++..+..+.. ++ +|++
T Consensus 64 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~ 142 (592)
T 3ogk_B 64 TPDRLSRRFPNLRSLKLKGKPRAAMFNL-IPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLET 142 (592)
T ss_dssp CHHHHHHHCTTCSEEEEECSCGGGGGTC-SCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCE
T ss_pred ChHHHHHhCCCCeEEEecCCcchhhccc-ccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcE
Confidence 34445667778888888764320 00 11 11226888899999888877655555554 33 4889
Q ss_pred EeCCCCCC-CC-CchhhhcCCCCCCEEEcccCcCCcc----cchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccc
Q 036216 81 LGLPFNHF-SS-SVPKWFDRLTHLEHLSLSYNSLEGR----IPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNG 154 (695)
Q Consensus 81 L~L~~n~l-~~-~~p~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~ 154 (695)
|++++|.. +. .++.....+++|++|++++|.+.+. ++..+..+++|++|++++|.+.+.....+...+..+++
T Consensus 143 L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~- 221 (592)
T 3ogk_B 143 LKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRS- 221 (592)
T ss_dssp EEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTT-
T ss_pred EECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCC-
Confidence 99888762 11 1223345788899999998887654 44456678889999998888874444444445556665
Q ss_pred cceEEccCcccccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCC
Q 036216 155 LESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRD 234 (695)
Q Consensus 155 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 234 (695)
|+.|++++|.+.+ ++..+..+++|++|+++....... .+... ..+..+++|+.+.++++. ....+..
T Consensus 222 L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~----------~~~~~-~~l~~~~~L~~L~l~~~~-~~~l~~~ 288 (592)
T 3ogk_B 222 LVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIG----------MPEKY-MNLVFPRKLCRLGLSYMG-PNEMPIL 288 (592)
T ss_dssp CCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTT----------CTTSS-SCCCCCTTCCEEEETTCC-TTTGGGG
T ss_pred CcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccc----------hHHHH-HHhhccccccccCccccc-hhHHHHH
Confidence 9999999988877 567788889999999875321100 00111 145677888888887753 2234445
Q ss_pred CCCCCCccEEEccCCCCCCCCC-ccccCCCCCCEEEcccCCCccccChHHhhcccccceeeccc-----------ccccc
Q 036216 235 WIPPFQLIELGLRSCDVGSRFP-LWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGH-----------NQIHG 302 (695)
Q Consensus 235 ~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~-----------n~l~~ 302 (695)
+..+++|++|++++|.+..... ..+..+++|++|+++ +.+.+.....+...+++|++|++++ +.++.
T Consensus 289 ~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~ 367 (592)
T 3ogk_B 289 FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQ 367 (592)
T ss_dssp GGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCH
T ss_pred HhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCH
Confidence 6677899999999988654433 346788999999999 4454444455567789999999993 45543
Q ss_pred c-ccC-ccccCccceEecccccceeecCC----CCCCCcEEEcc----CCcCCCccch-hhhhhhhhccccceeeccccc
Q 036216 303 E-LTN-LTKASQLSYLSLIANNFSGSLPL----ISSNLTVLELS----GNSLSGPIFH-FLCYTINETMKLKFLFLDRNI 371 (695)
Q Consensus 303 ~-~~~-~~~~~~L~~L~l~~n~~~~~~~~----~~~~L~~L~l~----~n~l~~~~~~-~~~~~~~~~~~L~~L~l~~n~ 371 (695)
. +.. ...+++|++|++..+.+++..+. .+++|+.|+++ .|.+++...+ .+...+..+++|+.|+++.|.
T Consensus 368 ~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~ 447 (592)
T 3ogk_B 368 RGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQ 447 (592)
T ss_dssp HHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCG
T ss_pred HHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCC
Confidence 2 222 34578999999977777653221 14456666664 3344432111 122223335555555554322
Q ss_pred --ccCCCCcccc-CCCCCCEEeCCCCcccc-cCCccccCCCCCcEEECcCCcceee-CCccccCCCCCcEEEcCCCccc
Q 036216 372 --LQGKLPDCWM-SYQNLMALDLSNNKFTG-NLPTSLGSLSSLVSLHLRKNRLSGT-IPILLKNCTSLVTLDVGENEVF 445 (695)
Q Consensus 372 --l~~~~~~~~~-~~~~L~~L~ls~n~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~ 445 (695)
+++..+..+. .+++|++|++++|.+++ .++..+..+++|++|++++|.+++. ++..+..+++|++|++++|+++
T Consensus 448 ~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 448 GGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp GGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred CCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 2222222221 24445555555554443 1222233444444444444444322 1222233444444444444443
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=2.4e-26 Score=244.90 Aligned_cols=227 Identities=21% Similarity=0.217 Sum_probs=143.8
Q ss_pred ccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcC
Q 036216 361 KLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVG 440 (695)
Q Consensus 361 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 440 (695)
.++.|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|++++..+..|..+++|++|+++
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 155 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR 155 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence 45555555555555555556666666666666666665555566666666666666666665555556666666666666
Q ss_pred CCcccccCChhhhhcCCCCcEEEcCCCcccccC-CccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCccc
Q 036216 441 ENEVFGNIPSWFGERFSRMVLLILRSNNFDGPL-PTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIE 519 (695)
Q Consensus 441 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~ 519 (695)
+|.+. .+|...+..+++|+.|++++|...+.+ +..|..+++|++|++++|++++ +|. +..++
T Consensus 156 ~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~-~~~l~-------------- 218 (452)
T 3zyi_A 156 NNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPN-LTPLV-------------- 218 (452)
T ss_dssp SCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CCC-CTTCT--------------
T ss_pred CCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-ccc-ccccc--------------
Confidence 66653 333333335666666666664333233 3346667777777777776662 221 22222
Q ss_pred ccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccC
Q 036216 520 YSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGT 599 (695)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~ 599 (695)
.|+.|++++|++++..|..|.++++|++|++++|++++..|..|..
T Consensus 219 ----------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 264 (452)
T 3zyi_A 219 ----------------------------------GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDG 264 (452)
T ss_dssp ----------------------------------TCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred ----------------------------------cccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcC
Confidence 2367777777777777777777777888888888777777777777
Q ss_pred cCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccCcCc
Q 036216 600 MRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLT 638 (695)
Q Consensus 600 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~ 638 (695)
+++|+.|+|++|++++..+..+..+++|++|++++|++.
T Consensus 265 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 265 LASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 778888888888777666666777777888888887765
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=2.3e-26 Score=244.07 Aligned_cols=227 Identities=23% Similarity=0.217 Sum_probs=139.6
Q ss_pred ccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcC
Q 036216 361 KLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVG 440 (695)
Q Consensus 361 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 440 (695)
.++.|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|+++...+..|..+++|++|+++
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 144 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR 144 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence 44455555555554444555556666666666666655555555556666666666666554444455556666666666
Q ss_pred CCcccccCChhhhhcCCCCcEEEcCCCccccc-CCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCccc
Q 036216 441 ENEVFGNIPSWFGERFSRMVLLILRSNNFDGP-LPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIE 519 (695)
Q Consensus 441 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~ 519 (695)
+|.+. .++...+..+++|+.|++++|+..+. .+..|.++++|++|++++|+++ .+|. +..++
T Consensus 145 ~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~l~-------------- 207 (440)
T 3zyj_A 145 NNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLI-------------- 207 (440)
T ss_dssp SCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-CTTCS--------------
T ss_pred CCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-cCCCc--------------
Confidence 66553 33332223566666666665333222 2335666677777777777666 3331 22222
Q ss_pred ccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccC
Q 036216 520 YSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGT 599 (695)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~ 599 (695)
.|+.|+|++|++++..|..|.++++|++|++++|++++..|..|..
T Consensus 208 ----------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 253 (440)
T 3zyj_A 208 ----------------------------------KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN 253 (440)
T ss_dssp ----------------------------------SCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTT
T ss_pred ----------------------------------ccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcC
Confidence 2367777777777766777777777777777777777777777777
Q ss_pred cCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccCcCc
Q 036216 600 MRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLT 638 (695)
Q Consensus 600 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~ 638 (695)
+++|+.|+|++|++++..+..|..+++|+.|++++|++.
T Consensus 254 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 254 LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 777777777777777666666777777777777777764
No 59
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=4.2e-27 Score=238.63 Aligned_cols=220 Identities=21% Similarity=0.269 Sum_probs=199.8
Q ss_pred CCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEE
Q 036216 383 YQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLL 462 (695)
Q Consensus 383 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 462 (695)
.++++.|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+. .+++|++|
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~-~l~~L~~L 155 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIA-SLNRLREL 155 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGG-GCTTCCEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHh-cCcCCCEE
Confidence 478999999999999 77888888999999999999999 88999999999999999999995 8898876 79999999
Q ss_pred EcCCCcccccCCccccC---------CCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCcc
Q 036216 463 ILRSNNFDGPLPTELCD---------LAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTV 533 (695)
Q Consensus 463 ~l~~n~~~~~~~~~l~~---------l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~ 533 (695)
++++|++.+.+|..+.. +++|++|++++|+++ .+|..+..+++|
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L-------------------------- 208 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNL-------------------------- 208 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTC--------------------------
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCC--------------------------
Confidence 99999999999887764 999999999999999 888888777766
Q ss_pred ccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcc
Q 036216 534 TEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKF 613 (695)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l 613 (695)
++|++++|+++ .+|..+..+++|++|++++|.+.+.+|..++.+++|+.|++++|.+
T Consensus 209 ----------------------~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~ 265 (328)
T 4fcg_A 209 ----------------------KSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSN 265 (328)
T ss_dssp ----------------------CEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTT
T ss_pred ----------------------CEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCc
Confidence 88999999999 4777899999999999999999999999999999999999999999
Q ss_pred cccCCcCCcCCCCCCEEEcccCcCcccCCCC-cccCcccccccc
Q 036216 614 TGEIPQSMSSLTFLNHLNLSNNYLTGKIPSS-TQLQSFNASCFL 656 (695)
Q Consensus 614 ~~~~p~~l~~l~~L~~L~ls~N~l~~~iP~~-~~~~~~~~~~~~ 656 (695)
.+.+|..+..+++|++|++++|++.|.+|+. ..+..+....+.
T Consensus 266 ~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 266 LLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp CCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred hhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence 9999999999999999999999999999986 556665555443
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=3.5e-26 Score=243.60 Aligned_cols=248 Identities=22% Similarity=0.225 Sum_probs=212.3
Q ss_pred cceEecccccceeecCCCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCC
Q 036216 313 LSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLS 392 (695)
Q Consensus 313 L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls 392 (695)
...++.++..+.......+++++.|++++|.+++..+. .|..+++|+.|++++|.+.+..+..|.++++|++|+++
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~----~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQAD----TFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHH----HcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 34455555555543334456888888888888765444 34468999999999999998888899999999999999
Q ss_pred CCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCccccc
Q 036216 393 NNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGP 472 (695)
Q Consensus 393 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 472 (695)
+|.+++..+..|..+++|++|++++|++....+..|..+++|+.|++++|...+.++...+..+++|+.|++++|++++.
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 99999777778999999999999999999887888999999999999997666778776666899999999999999854
Q ss_pred CCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhc
Q 036216 473 LPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEIL 552 (695)
Q Consensus 473 ~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (695)
| .+..+++|++|++++|++++..|..|.++++|
T Consensus 212 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L--------------------------------------------- 244 (452)
T 3zyi_A 212 -P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSL--------------------------------------------- 244 (452)
T ss_dssp -C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTC---------------------------------------------
T ss_pred -c-cccccccccEEECcCCcCcccCcccccCccCC---------------------------------------------
Confidence 4 58899999999999999998888888877766
Q ss_pred ccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCccc
Q 036216 553 NLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFT 614 (695)
Q Consensus 553 ~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~ 614 (695)
+.|++++|++++..|..|..+++|++|+|++|++++..++.|..+++|+.|+|++|.+.
T Consensus 245 ---~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 245 ---KKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp ---CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred ---CEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 78999999999999999999999999999999999777788899999999999999875
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=4.1e-26 Score=242.13 Aligned_cols=248 Identities=24% Similarity=0.262 Sum_probs=209.6
Q ss_pred cceEecccccceeecCCCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCC
Q 036216 313 LSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLS 392 (695)
Q Consensus 313 L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls 392 (695)
...++..+..+.......+++++.|++++|.+++..+. .|.++++|++|++++|.+.+..+..|.++++|++|+++
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~----~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVN----SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTT----TTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHH----HhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 34555555555544444456788888888888754433 44568999999999999998878889999999999999
Q ss_pred CCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCccccc
Q 036216 393 NNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGP 472 (695)
Q Consensus 393 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 472 (695)
+|.+++..+..|..+++|++|++++|++....+..|..+++|++|++++|...+.++...+..+++|+.|++++|+++ .
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~ 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence 999997777789999999999999999998888889999999999999976667777766668999999999999998 4
Q ss_pred CCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhc
Q 036216 473 LPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEIL 552 (695)
Q Consensus 473 ~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (695)
+| .+..+++|++|++++|++++..|..|.++++|
T Consensus 200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L--------------------------------------------- 233 (440)
T 3zyj_A 200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHL--------------------------------------------- 233 (440)
T ss_dssp CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTC---------------------------------------------
T ss_pred cc-ccCCCcccCEEECCCCccCccChhhhccCccC---------------------------------------------
Confidence 45 58889999999999999998888888877766
Q ss_pred ccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCccc
Q 036216 553 NLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFT 614 (695)
Q Consensus 553 ~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~ 614 (695)
+.|++++|++++..+..|..+++|++|+|++|++++..++.|..+++|+.|+|++|.+.
T Consensus 234 ---~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 234 ---QKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp ---CEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred ---CEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 78899999999988999999999999999999999887888899999999999999875
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=9.4e-27 Score=232.01 Aligned_cols=266 Identities=18% Similarity=0.210 Sum_probs=206.4
Q ss_pred cEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEE
Q 036216 335 TVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLH 414 (695)
Q Consensus 335 ~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~ 414 (695)
++++.+++.++.. |..+ .+++++|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|+
T Consensus 14 ~~~~c~~~~l~~i-p~~~------~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 86 (285)
T 1ozn_A 14 VTTSCPQQGLQAV-PVGI------PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLD 86 (285)
T ss_dssp CEEECCSSCCSSC-CTTC------CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred eEEEcCcCCcccC-CcCC------CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEe
Confidence 4566666665532 2211 34778888888888877667788889999999999988887788888899999999
Q ss_pred CcCCc-ceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcC
Q 036216 415 LRKNR-LSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNL 493 (695)
Q Consensus 415 l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l 493 (695)
+++|. +....+..+..+++|++|++++|.+.+..|..+. .+++|++|++++|++.+..+..+..+++|++|++++|++
T Consensus 87 l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 165 (285)
T 1ozn_A 87 LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR-GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 165 (285)
T ss_dssp CCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhh-CCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcc
Confidence 99997 7766678888899999999999988665555554 689999999999999877777788999999999999999
Q ss_pred cccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccc
Q 036216 494 SGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGL 573 (695)
Q Consensus 494 ~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l 573 (695)
++..+..+..+++| +.|++++|++++..|..|
T Consensus 166 ~~~~~~~~~~l~~L------------------------------------------------~~L~l~~n~l~~~~~~~~ 197 (285)
T 1ozn_A 166 SSVPERAFRGLHSL------------------------------------------------DRLLLHQNRVAHVHPHAF 197 (285)
T ss_dssp CEECTTTTTTCTTC------------------------------------------------CEEECCSSCCCEECTTTT
T ss_pred cccCHHHhcCcccc------------------------------------------------CEEECCCCcccccCHhHc
Confidence 86555567666655 788999999998889999
Q ss_pred cCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccCcCcccCCCC---cccCcc
Q 036216 574 TNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSS---TQLQSF 650 (695)
Q Consensus 574 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~iP~~---~~~~~~ 650 (695)
..+++|++|++++|.+++..++.++.+++|+.|++++|.+....+.. .-...++.+..+.+.+.+..|+. ..+..+
T Consensus 198 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l 276 (285)
T 1ozn_A 198 RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRL 276 (285)
T ss_dssp TTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTTCBGGGS
T ss_pred cCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhCCcChhhc
Confidence 99999999999999999777677999999999999999998543321 11233555667888888888875 234444
Q ss_pred ccccccC
Q 036216 651 NASCFLG 657 (695)
Q Consensus 651 ~~~~~~~ 657 (695)
....+.|
T Consensus 277 ~~~~l~~ 283 (285)
T 1ozn_A 277 AANDLQG 283 (285)
T ss_dssp CGGGSCC
T ss_pred CHHHhcc
Confidence 4444444
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=2.8e-27 Score=239.26 Aligned_cols=256 Identities=20% Similarity=0.177 Sum_probs=189.4
Q ss_pred CcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEE
Q 036216 334 LTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSL 413 (695)
Q Consensus 334 L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L 413 (695)
++..+++.+.+. ......+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+ +..+++|++|
T Consensus 12 l~i~~ls~~~l~----~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L 85 (317)
T 3o53_A 12 YKIEKVTDSSLK----QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTL 85 (317)
T ss_dssp EEEESCCTTTHH----HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEE
T ss_pred eeEeeccccchh----hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEE
Confidence 344455555443 3333344457788999999998887777788889999999999998886544 7888999999
Q ss_pred ECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcC
Q 036216 414 HLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNL 493 (695)
Q Consensus 414 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l 493 (695)
++++|++++.. ..++|++|++++|.+.+..+. .+++|++|++++|++++..+..+..+++|++|++++|++
T Consensus 86 ~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~----~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 156 (317)
T 3o53_A 86 DLNNNYVQELL-----VGPSIETLHAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156 (317)
T ss_dssp ECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC----CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCC
T ss_pred ECcCCcccccc-----CCCCcCEEECCCCccCCcCcc----ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCC
Confidence 99999887543 348899999999988554443 467899999999999887777888889999999999998
Q ss_pred cccCChhhh-hcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCcc
Q 036216 494 SGTIPNCIH-NLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMG 572 (695)
Q Consensus 494 ~~~~p~~~~-~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~ 572 (695)
++..+..+. .+++| ++|++++|.+++. | .
T Consensus 157 ~~~~~~~~~~~l~~L------------------------------------------------~~L~L~~N~l~~~-~-~ 186 (317)
T 3o53_A 157 DTVNFAELAASSDTL------------------------------------------------EHLNLQYNFIYDV-K-G 186 (317)
T ss_dssp CEEEGGGGGGGTTTC------------------------------------------------CEEECTTSCCCEE-E-C
T ss_pred CcccHHHHhhccCcC------------------------------------------------CEEECCCCcCccc-c-c
Confidence 866655543 34444 7888888888755 2 2
Q ss_pred ccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccCcCc-ccCCCC-cccCcc
Q 036216 573 LTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLT-GKIPSS-TQLQSF 650 (695)
Q Consensus 573 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~-~~iP~~-~~~~~~ 650 (695)
...+++|++|++++|++++ +|..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|++. +.+|.. ..+..+
T Consensus 187 ~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L 264 (317)
T 3o53_A 187 QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264 (317)
T ss_dssp CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHH
T ss_pred ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccc
Confidence 3457888888888888884 4555888888888888888888 57878888888888888888887 555543 333333
Q ss_pred cccccc
Q 036216 651 NASCFL 656 (695)
Q Consensus 651 ~~~~~~ 656 (695)
......
T Consensus 265 ~~l~l~ 270 (317)
T 3o53_A 265 QTVAKQ 270 (317)
T ss_dssp HHHHHH
T ss_pred eEEECC
Confidence 333333
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=1.5e-27 Score=240.74 Aligned_cols=203 Identities=22% Similarity=0.261 Sum_probs=133.7
Q ss_pred CCCCCCEEeCCCCcccccCCccc--cCCCCCcEEECcCCcceeeCCccccCC-----CCCcEEEcCCCcccccCChhhhh
Q 036216 382 SYQNLMALDLSNNKFTGNLPTSL--GSLSSLVSLHLRKNRLSGTIPILLKNC-----TSLVTLDVGENEVFGNIPSWFGE 454 (695)
Q Consensus 382 ~~~~L~~L~ls~n~~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~~~~~~~~~~~~ 454 (695)
++++|++|++++|.+++..|..+ ..+++|++|++++|++++. |..+..+ ++|++|++++|.+.+..|..+.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~- 170 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR- 170 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC-
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc-
Confidence 45555566666555555555543 5555666666666655544 4444444 5566666666665443334443
Q ss_pred cCCCCcEEEcCCCccccc--CCccc--cCCCCCCEEeCCCCcCccc--CC-hhhhhcccCcccCCCCCCcccccCCCCCC
Q 036216 455 RFSRMVLLILRSNNFDGP--LPTEL--CDLAFLQILDLADNNLSGT--IP-NCIHNLTAMATVNPFTGNAIEYSFPLNST 527 (695)
Q Consensus 455 ~l~~L~~L~l~~n~~~~~--~~~~l--~~l~~L~~L~L~~n~l~~~--~p-~~~~~l~~L~~l~~~~~~~l~~~~~~~~~ 527 (695)
.+++|++|++++|++.+. .+..+ ..+++|++|++++|++++. ++ ..+..+
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l----------------------- 227 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR----------------------- 227 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTT-----------------------
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcC-----------------------
Confidence 456666666666665443 22233 6778888888888877621 11 112222
Q ss_pred CCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCC-ccccCCCCCCEEeccCCcccccCCccccCcCCCCEE
Q 036216 528 IGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLP-MGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESI 606 (695)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 606 (695)
+.|+.|++++|++++..| ..+..+++|++|++++|+++ .+|..+. ++|+.|
T Consensus 228 -------------------------~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L 279 (312)
T 1wwl_A 228 -------------------------VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVL 279 (312)
T ss_dssp -------------------------CCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEE
T ss_pred -------------------------CCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEE
Confidence 334788888888887665 45667889999999999998 7787776 889999
Q ss_pred ECCCCcccccCCcCCcCCCCCCEEEcccCcCcc
Q 036216 607 DFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTG 639 (695)
Q Consensus 607 ~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 639 (695)
++++|++++. |. +..+++|++|++++|++++
T Consensus 280 ~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 280 DLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp ECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred ECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 9999999865 66 8899999999999999875
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=9.3e-27 Score=234.90 Aligned_cols=247 Identities=18% Similarity=0.235 Sum_probs=201.3
Q ss_pred hccccceeecccccccCCCCccccCCCCCCEEeCCCCccc-ccCCcccc-------CCCCCcEEECcCCcceeeCCccc-
Q 036216 358 ETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFT-GNLPTSLG-------SLSSLVSLHLRKNRLSGTIPILL- 428 (695)
Q Consensus 358 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~-~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~- 428 (695)
..++|+.+++++|.+ .+|..+... |+.|++++|.+. ..+|..+. .+++|++|++++|++++..|..+
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred cCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 356788888888888 566655543 888888888884 45565554 68999999999999998888876
Q ss_pred -cCCCCCcEEEcCCCcccccCChhhhhcC-----CCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccC--Chh
Q 036216 429 -KNCTSLVTLDVGENEVFGNIPSWFGERF-----SRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTI--PNC 500 (695)
Q Consensus 429 -~~l~~L~~L~l~~n~~~~~~~~~~~~~l-----~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~--p~~ 500 (695)
..+++|++|++++|.+.+. |..+. .+ ++|++|++++|++.+..|..++++++|++|++++|++.+.+ |..
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~-~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATR-DAWLA-ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSS-SSHHH-HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HhcCCCccEEEccCCCCcch-hHHHH-HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 8999999999999999766 76665 45 99999999999999888899999999999999999987542 222
Q ss_pred h--hhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccc--cCC-ccccC
Q 036216 501 I--HNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSG--TLP-MGLTN 575 (695)
Q Consensus 501 ~--~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~--~~p-~~l~~ 575 (695)
+ ..+++ |++|++++|++++ .++ ..+..
T Consensus 195 ~~~~~l~~------------------------------------------------L~~L~L~~N~l~~~~~~~~~~~~~ 226 (312)
T 1wwl_A 195 LCPLKFPT------------------------------------------------LQVLALRNAGMETPSGVCSALAAA 226 (312)
T ss_dssp SCTTSCTT------------------------------------------------CCEEECTTSCCCCHHHHHHHHHHT
T ss_pred HHhccCCC------------------------------------------------CCEEECCCCcCcchHHHHHHHHhc
Confidence 2 33333 4899999999983 222 34568
Q ss_pred CCCCCEEeccCCcccccCC-ccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccCcCcccCCCCcccCcccccc
Q 036216 576 LKAVQSLNLSYNIFTGRIP-ETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSFNASC 654 (695)
Q Consensus 576 l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~iP~~~~~~~~~~~~ 654 (695)
+++|++|++++|++++.+| ..+..+++|+.|++++|+++ .+|..+. ++|++|++++|++++. |....+..++...
T Consensus 227 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~ 302 (312)
T 1wwl_A 227 RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLS 302 (312)
T ss_dssp TCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEE
T ss_pred CCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEe
Confidence 8999999999999997775 45677899999999999999 7888877 8999999999999987 7777788888888
Q ss_pred ccCCcccC
Q 036216 655 FLGNNLCG 662 (695)
Q Consensus 655 ~~~n~l~~ 662 (695)
+.+|.+.+
T Consensus 303 L~~N~l~~ 310 (312)
T 1wwl_A 303 LKGNPFLD 310 (312)
T ss_dssp CTTCTTTC
T ss_pred ccCCCCCC
Confidence 88876554
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.5e-25 Score=239.76 Aligned_cols=224 Identities=21% Similarity=0.171 Sum_probs=191.0
Q ss_pred hhccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcE
Q 036216 357 NETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVT 436 (695)
Q Consensus 357 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 436 (695)
..+++|+.|++++|.+++..|..|..+++|++|++++|.+++..| +..+++|++|++++|.+++..+ .++|++
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~ 103 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIET 103 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCE
Confidence 346689999999999998888889999999999999999987655 8899999999999999985443 389999
Q ss_pred EEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhh-hcccCcccCCCCC
Q 036216 437 LDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIH-NLTAMATVNPFTG 515 (695)
Q Consensus 437 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~l~~~~~ 515 (695)
|++++|.+.+..+. .+++|+.|++++|.+++..|..++.+++|++|++++|.+++..|..+. .+++|
T Consensus 104 L~L~~N~l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L-------- 171 (487)
T 3oja_A 104 LHAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL-------- 171 (487)
T ss_dssp EECCSSCCCCEEEC----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC--------
T ss_pred EECcCCcCCCCCcc----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc--------
Confidence 99999999665543 478999999999999998888899999999999999999987777665 45554
Q ss_pred CcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCc
Q 036216 516 NAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPE 595 (695)
Q Consensus 516 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 595 (695)
+.|+|++|.+++..+ +..+++|++|+|++|.+++. |.
T Consensus 172 ----------------------------------------~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~-~~ 208 (487)
T 3oja_A 172 ----------------------------------------EHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFM-GP 208 (487)
T ss_dssp ----------------------------------------CEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEE-CG
T ss_pred ----------------------------------------cEEecCCCccccccc--cccCCCCCEEECCCCCCCCC-CH
Confidence 889999999997633 44689999999999999964 45
Q ss_pred cccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccCcCc-ccCCC
Q 036216 596 TIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLT-GKIPS 643 (695)
Q Consensus 596 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~-~~iP~ 643 (695)
.++.+++|+.|+|++|.+++ +|..+..+++|+.|++++|++. +.+|.
T Consensus 209 ~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~ 256 (487)
T 3oja_A 209 EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRD 256 (487)
T ss_dssp GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHH
T ss_pred hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHH
Confidence 58999999999999999994 7888999999999999999998 55554
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=2.5e-24 Score=234.51 Aligned_cols=263 Identities=25% Similarity=0.294 Sum_probs=182.8
Q ss_pred ccceeecccccccccccCccccCccceEecccccceeecCCCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecc
Q 036216 289 QLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLD 368 (695)
Q Consensus 289 ~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~ 368 (695)
+++.|++++|.++..+..+. ++|++|++++|.+.. +|..+++|++|++++|++++ ++. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~-lp~~l~~L~~L~Ls~N~l~~-lp~-------~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTS-LPALPPELRTLEVSGNQLTS-LPV-------LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSC-CCCCCTTCCEEEECSCCCSC-CCC-------CCTTCCEEEEC
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCC-CCCcCCCCCEEEcCCCcCCc-CCC-------CCCCCCEEECc
Confidence 35555555555553322222 455555555555552 33345666777777776653 222 25677777777
Q ss_pred cccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccC
Q 036216 369 RNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNI 448 (695)
Q Consensus 369 ~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 448 (695)
+|.+++ +|. .+++|+.|++++|++++ +|.. +++|++|++++|++++ +|. .+++|+.|++++|.+. .+
T Consensus 110 ~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l 176 (622)
T 3g06_A 110 SNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLT-SL 176 (622)
T ss_dssp SCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CC
T ss_pred CCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCC-CC
Confidence 777764 333 45778888888888774 4543 3788888888888774 343 3467888888888873 46
Q ss_pred ChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCC
Q 036216 449 PSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTI 528 (695)
Q Consensus 449 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~ 528 (695)
|. .+++|+.|++++|++++ +|.. +++|+.|++++|.++ .+|..
T Consensus 177 ~~----~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~---------------------------- 219 (622)
T 3g06_A 177 PM----LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---------------------------- 219 (622)
T ss_dssp CC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCC----------------------------
T ss_pred cc----cCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCC----------------------------
Confidence 62 57788888888888874 4432 467888888888877 33321
Q ss_pred CCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEEC
Q 036216 529 GPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDF 608 (695)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 608 (695)
++.|+.|++++|++++ +| ..+++|++|++++|.++ .+|. .+++|+.|+|
T Consensus 220 -----------------------~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~L 268 (622)
T 3g06_A 220 -----------------------PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSV 268 (622)
T ss_dssp -----------------------CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEEC
T ss_pred -----------------------CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeC
Confidence 1234788999999885 55 45688999999999998 5666 5788999999
Q ss_pred CCCcccccCCcCCcCCCCCCEEEcccCcCcccCCCC
Q 036216 609 SVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSS 644 (695)
Q Consensus 609 s~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~iP~~ 644 (695)
++|+++ .+|..+..+++|+.|++++|++++.+|..
T Consensus 269 s~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~ 303 (622)
T 3g06_A 269 YRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA 303 (622)
T ss_dssp CSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHH
T ss_pred CCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHH
Confidence 999999 78989999999999999999999888764
No 68
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=1.4e-24 Score=215.14 Aligned_cols=214 Identities=22% Similarity=0.193 Sum_probs=163.3
Q ss_pred CCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEE
Q 036216 384 QNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLI 463 (695)
Q Consensus 384 ~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 463 (695)
++|++|++++|.+++..+..|..+++|++|++++|++.+..+..|..+++|++|++++|.+.+..+..+. .+++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS-GLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT-TCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhc-CCccccEEE
Confidence 4677778877777766666777777788888888777766666777777888888888777555444443 677888888
Q ss_pred cCCCcccccCCccccCCCCCCEEeCCCCcCccc-CChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEec
Q 036216 464 LRSNNFDGPLPTELCDLAFLQILDLADNNLSGT-IPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTK 542 (695)
Q Consensus 464 l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 542 (695)
+++|++.+..+..+..+++|++|++++|++++. +|..+..+++|
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L----------------------------------- 151 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL----------------------------------- 151 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC-----------------------------------
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCC-----------------------------------
Confidence 888887766666778888888888888888753 46677666655
Q ss_pred CCcchhhhhcccccEEEcCCccccccCCccccCCCCCC----EEeccCCcccccCCccccCcCCCCEEECCCCcccccCC
Q 036216 543 GVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQ----SLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIP 618 (695)
Q Consensus 543 ~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~----~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p 618 (695)
++|++++|++++..+..+..+++|+ +|++++|++++..+..+. ..+|+.|++++|++++..+
T Consensus 152 -------------~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~ 217 (276)
T 2z62_A 152 -------------EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPD 217 (276)
T ss_dssp -------------CEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCT
T ss_pred -------------CEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCH
Confidence 7778888888877777777777776 899999999866555554 4589999999999997666
Q ss_pred cCCcCCCCCCEEEcccCcCcccCCCCccc
Q 036216 619 QSMSSLTFLNHLNLSNNYLTGKIPSSTQL 647 (695)
Q Consensus 619 ~~l~~l~~L~~L~ls~N~l~~~iP~~~~~ 647 (695)
..+..+++|++|++++|++.+..|....+
T Consensus 218 ~~~~~l~~L~~L~l~~N~~~c~c~~l~~l 246 (276)
T 2z62_A 218 GIFDRLTSLQKIWLHTNPWDCSCPRIDYL 246 (276)
T ss_dssp TTTTTCCSCCEEECCSSCBCCCTTTTHHH
T ss_pred hHhcccccccEEEccCCcccccCCchHHH
Confidence 77889999999999999999888765433
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=3.2e-26 Score=231.47 Aligned_cols=260 Identities=19% Similarity=0.183 Sum_probs=169.4
Q ss_pred CcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCC
Q 036216 5 LVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLP 84 (695)
Q Consensus 5 L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 84 (695)
++..+++.+.+...+...+..+++|++|++++|.+++. .|..+..+++|++|++++|.+++..+ +..+++|++|+++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCC-CHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcC-CHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 44555666666555555566667788888888888775 56677788888888888888775443 7778888888888
Q ss_pred CCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcc
Q 036216 85 FNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSS 164 (695)
Q Consensus 85 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~ 164 (695)
+|.+++. ...++|++|++++|.+.+..+. .+++|++|++++|++.+..+. .++.+.. |++|++++|.
T Consensus 89 ~n~l~~l-----~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~----~~~~l~~-L~~L~Ls~N~ 155 (317)
T 3o53_A 89 NNYVQEL-----LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDL----DEGCRSR-VQYLDLKLNE 155 (317)
T ss_dssp SSEEEEE-----EECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGB----CTGGGSS-EEEEECTTSC
T ss_pred CCccccc-----cCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccch----hhhccCC-CCEEECCCCC
Confidence 8877642 2347788888888887754433 356777888888877765554 3444444 7777777777
Q ss_pred cccccchhc-CCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCccE
Q 036216 165 ISGHLTDQL-GQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIE 243 (695)
Q Consensus 165 ~~~~~~~~l-~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 243 (695)
+.+..+..+ ..+++|++|++++|.++ .++. ...+++|+.|++++|.++...+ .+..+++|++
T Consensus 156 l~~~~~~~~~~~l~~L~~L~L~~N~l~--------------~~~~--~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~ 218 (317)
T 3o53_A 156 IDTVNFAELAASSDTLEHLNLQYNFIY--------------DVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTW 218 (317)
T ss_dssp CCEEEGGGGGGGTTTCCEEECTTSCCC--------------EEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSE
T ss_pred CCcccHHHHhhccCcCCEEECCCCcCc--------------cccc--ccccccCCEEECCCCcCCcchh-hhcccCcccE
Confidence 777666655 35677777777777765 2221 2246677777777777765433 3666666777
Q ss_pred EEccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHhhcccccceeecccc
Q 036216 244 LGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHN 298 (695)
Q Consensus 244 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n 298 (695)
|++++|.+.. +|..+..+++|+.|++++|.+.......++..+++|+.++++++
T Consensus 219 L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 219 ISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp EECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred EECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 7777766663 45556666667777777766652222333455566666666633
No 70
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=1.2e-27 Score=265.16 Aligned_cols=422 Identities=15% Similarity=0.069 Sum_probs=197.5
Q ss_pred cCCCCCCCCCEEECCCCCCC-CCC-C------------chhhcCCCCCCEEEcCCCcCcccCCccCC-CCCCCCEEeCCC
Q 036216 21 LPVANFSTLTTLDLSHNQFD-NSF-V------------PAWVFGLSRLHFLNLGYNNFQGPIPEGLQ-NLTSLKHLGLPF 85 (695)
Q Consensus 21 ~~~~~l~~L~~L~Ls~n~i~-~~~-~------------~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~ 85 (695)
..+..+++|++|+++++... +.. . +.....+++|++|+|++|.+++..+..+. .+++|++|++++
T Consensus 60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~ 139 (594)
T 2p1m_B 60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSS 139 (594)
T ss_dssp HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEES
T ss_pred HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCC
Confidence 34556677777777776421 100 1 11223567777777777776655444553 567777777777
Q ss_pred C-CCCCC-chhhhcCCCCCCEEEcccCcCCcccchhhc----CCCCCCEEEccCCcCccccchhhhhhhcccccccceEE
Q 036216 86 N-HFSSS-VPKWFDRLTHLEHLSLSYNSLEGRIPRSMA----RLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLA 159 (695)
Q Consensus 86 n-~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~ 159 (695)
| .++.. ++..+.++++|++|++++|.+++..+..+. .+++|++|++++|. .......+......+++ |++|+
T Consensus 140 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~-L~~L~ 217 (594)
T 2p1m_B 140 CEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPN-LKSLK 217 (594)
T ss_dssp CEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTT-CCEEE
T ss_pred cCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCC-CcEEe
Confidence 7 34321 334444677777777777776544333333 55677777777765 11112222222333344 77777
Q ss_pred ccCcccccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEE-cccccceeecCCCCCCC
Q 036216 160 LASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFL-VGANKLTLKVKRDWIPP 238 (695)
Q Consensus 160 L~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~-l~~n~l~~~~~~~~~~~ 238 (695)
+++|...+.++..+..+++|++|+++.+... +..+.+. .++. .+.++++|+.+. +.....
T Consensus 218 L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~------~~~~~~~-~l~~-~l~~~~~L~~Ls~~~~~~~----------- 278 (594)
T 2p1m_B 218 LNRAVPLEKLATLLQRAPQLEELGTGGYTAE------VRPDVYS-GLSV-ALSGCKELRCLSGFWDAVP----------- 278 (594)
T ss_dssp CCTTSCHHHHHHHHHHCTTCSEEECSBCCCC------CCHHHHH-HHHH-HHHTCTTCCEEECCBTCCG-----------
T ss_pred cCCCCcHHHHHHHHhcCCcceEcccccccCc------cchhhHH-HHHH-HHhcCCCcccccCCcccch-----------
Confidence 7766322225566666777777766544310 1111111 1222 455666666652 211110
Q ss_pred CCccEEEccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHhhcccccceeecccccccc-cccCc-cccCccceE
Q 036216 239 FQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHG-ELTNL-TKASQLSYL 316 (695)
Q Consensus 239 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~-~~~~~L~~L 316 (695)
..++..+..+++|++|++++|.+.+.....+...+++|+.|++++| +.. .+..+ ..+++|++|
T Consensus 279 --------------~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L 343 (594)
T 2p1m_B 279 --------------AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLREL 343 (594)
T ss_dssp --------------GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEE
T ss_pred --------------hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEE
Confidence 1122222234445555555544433322333334455555555544 211 11111 113334444
Q ss_pred ecccccceeecCCCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCcccc-CCCCCCEEeCC--C
Q 036216 317 SLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWM-SYQNLMALDLS--N 393 (695)
Q Consensus 317 ~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~ls--~ 393 (695)
++.++.-.| ....+.+++.....+ ...+++|+.|.+..+.+++.....+. .+++|+.|+++ +
T Consensus 344 ~L~~~~~~g------------~~~~~~l~~~~l~~l---~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~ 408 (594)
T 2p1m_B 344 RVFPSEPFV------------MEPNVALTEQGLVSV---SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIE 408 (594)
T ss_dssp EEECSCTTC------------SSCSSCCCHHHHHHH---HHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESS
T ss_pred EEecCcccc------------cccCCCCCHHHHHHH---HHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeeccc
Confidence 432211000 001112221111111 11244555555544444433222222 34555555555 2
Q ss_pred ----Ccccc-----cCCccccCCCCCcEEECcCCcceeeCCccccC-CCCCcEEEcCCCcccccCChhhhhcCCCCcEEE
Q 036216 394 ----NKFTG-----NLPTSLGSLSSLVSLHLRKNRLSGTIPILLKN-CTSLVTLDVGENEVFGNIPSWFGERFSRMVLLI 463 (695)
Q Consensus 394 ----n~~~~-----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 463 (695)
+.++. .++..+..+++|++|++++ .+++..+..+.. +++|+.|++++|.+++..+..+...+++|++|+
T Consensus 409 ~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~ 487 (594)
T 2p1m_B 409 PKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLE 487 (594)
T ss_dssp TTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEE
T ss_pred CCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEE
Confidence 23321 1111234556666666655 443333333333 566666666666654444444434566666666
Q ss_pred cCCCcccccCCc-cccCCCCCCEEeCCCCcCc
Q 036216 464 LRSNNFDGPLPT-ELCDLAFLQILDLADNNLS 494 (695)
Q Consensus 464 l~~n~~~~~~~~-~l~~l~~L~~L~L~~n~l~ 494 (695)
+++|.+++.... ....+++|++|++++|+++
T Consensus 488 L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 488 IRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp EESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred CcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 666666433222 2334566677777666664
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=2.5e-24 Score=234.50 Aligned_cols=268 Identities=24% Similarity=0.318 Sum_probs=178.6
Q ss_pred CccEEEccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHhhcccccceeecccccccccccCccccCccceEecc
Q 036216 240 QLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLI 319 (695)
Q Consensus 240 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~ 319 (695)
+++.|+++++.+. .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|.+++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~----------------- 95 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTS----------------- 95 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSC-----------------
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCc-----------------
Confidence 3555555555554 3333332 45555555555554 3443 23445555555554442
Q ss_pred cccceeecCCCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCccccc
Q 036216 320 ANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGN 399 (695)
Q Consensus 320 ~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~ 399 (695)
+|..+++|++|++++|.+++... .+++|+.|++++|.+++ +|.. +++|++|++++|.+++
T Consensus 96 -------lp~~l~~L~~L~Ls~N~l~~l~~--------~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~- 155 (622)
T 3g06_A 96 -------LPVLPPGLLELSIFSNPLTHLPA--------LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS- 155 (622)
T ss_dssp -------CCCCCTTCCEEEECSCCCCCCCC--------CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-
T ss_pred -------CCCCCCCCCEEECcCCcCCCCCC--------CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-
Confidence 22244556666666665553211 24567777777777663 4432 4778888888888874
Q ss_pred CCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccC
Q 036216 400 LPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCD 479 (695)
Q Consensus 400 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~ 479 (695)
+|. .+++|+.|++++|.+++ +| ..+++|+.|++++|.+. .+|. .+++|+.|++++|.++. +|. .
T Consensus 156 l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~~-l~~---~ 219 (622)
T 3g06_A 156 LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLA-SLPT----LPSELYKLWAYNNRLTS-LPA---L 219 (622)
T ss_dssp CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSS-CCC---C
T ss_pred cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCC-CCCC----ccchhhEEECcCCcccc-cCC---C
Confidence 443 34678888888888874 44 34678888888888874 4554 35788888888888873 443 2
Q ss_pred CCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEE
Q 036216 480 LAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIID 559 (695)
Q Consensus 480 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 559 (695)
+++|++|++++|++++ +|. .++ .|+.|+
T Consensus 220 ~~~L~~L~Ls~N~L~~-lp~---~l~------------------------------------------------~L~~L~ 247 (622)
T 3g06_A 220 PSGLKELIVSGNRLTS-LPV---LPS------------------------------------------------ELKELM 247 (622)
T ss_dssp CTTCCEEECCSSCCSC-CCC---CCT------------------------------------------------TCCEEE
T ss_pred CCCCCEEEccCCccCc-CCC---CCC------------------------------------------------cCcEEE
Confidence 4789999999998873 441 112 247889
Q ss_pred cCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCCC
Q 036216 560 FSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLT 625 (695)
Q Consensus 560 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 625 (695)
+++|+|+ .+|. .+++|+.|+|++|.++ .+|..|+++++|+.|+|++|.+++..|..+..++
T Consensus 248 Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 248 VSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 9999988 5665 5788999999999999 7788899999999999999999988888776554
No 72
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=5e-27 Score=260.29 Aligned_cols=86 Identities=8% Similarity=-0.000 Sum_probs=51.4
Q ss_pred cccEEEcCCccccccCCccc-cCCCCCCEEeccCCcccccCCc-cccCcCCCCEEECCCCcccccCCcCC-cCCCCCCEE
Q 036216 554 LVRIIDFSKNLFSGTLPMGL-TNLKAVQSLNLSYNIFTGRIPE-TIGTMRSLESIDFSVNKFTGEIPQSM-SSLTFLNHL 630 (695)
Q Consensus 554 ~l~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L 630 (695)
.|+.|++++|.+++..+..+ ..+++|++|+|++|.+++..+. .+..+++|+.|++++|.++......+ ..++.|+..
T Consensus 457 ~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~ 536 (594)
T 2p1m_B 457 KMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVE 536 (594)
T ss_dssp TCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEE
T ss_pred hccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEE
Confidence 34677777777765444444 5567777777777777544333 33456777777777777754333333 345666655
Q ss_pred EcccCcCcc
Q 036216 631 NLSNNYLTG 639 (695)
Q Consensus 631 ~ls~N~l~~ 639 (695)
.+..+.-..
T Consensus 537 ~~~~~~~~~ 545 (594)
T 2p1m_B 537 VIDERGAPD 545 (594)
T ss_dssp EECSSSCGG
T ss_pred EecCCCccc
Confidence 555554433
No 73
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=1.5e-24 Score=214.12 Aligned_cols=224 Identities=18% Similarity=0.163 Sum_probs=175.3
Q ss_pred ccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEE
Q 036216 359 TMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLD 438 (695)
Q Consensus 359 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 438 (695)
+..+..+.+..+.+.+.. ....+++|+.|++++|.+.. ++ .+..+++|++|++++|.+.+. ..+..+++|++|+
T Consensus 18 ~~~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 91 (272)
T 3rfs_A 18 FAETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLI 91 (272)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCC-CT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEE
T ss_pred HHHHHHHHhcCccccccc--ccccccceeeeeeCCCCccc-cc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEE
Confidence 345556666666655442 34567788888888888763 33 477788888888888888753 3677888888888
Q ss_pred cCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcc
Q 036216 439 VGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAI 518 (695)
Q Consensus 439 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l 518 (695)
+++|.+.+..+..+ ..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|
T Consensus 92 L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L----------- 159 (272)
T 3rfs_A 92 LTGNQLQSLPNGVF-DKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL----------- 159 (272)
T ss_dssp CTTSCCCCCCTTTT-TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-----------
T ss_pred CCCCccCccChhHh-cCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC-----------
Confidence 88888854444333 368888888888888887777778888999999999998886666566666555
Q ss_pred cccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCcccc
Q 036216 519 EYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIG 598 (695)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~ 598 (695)
+.|++++|++++..+..+..+++|++|++++|++++..|..++
T Consensus 160 -------------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 202 (272)
T 3rfs_A 160 -------------------------------------TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFD 202 (272)
T ss_dssp -------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred -------------------------------------CEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHh
Confidence 7888999999877777788999999999999999988888889
Q ss_pred CcCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccCcCcccCCCC
Q 036216 599 TMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSS 644 (695)
Q Consensus 599 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~iP~~ 644 (695)
.+++|+.|++++|.+.+. ++.|+.++++.|.++|.+|..
T Consensus 203 ~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 203 RLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp TCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCT
T ss_pred CCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCc
Confidence 999999999999988754 457889999999999999975
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=1.9e-23 Score=206.00 Aligned_cols=207 Identities=19% Similarity=0.235 Sum_probs=149.1
Q ss_pred CCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEc
Q 036216 385 NLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLIL 464 (695)
Q Consensus 385 ~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 464 (695)
+.+.++++++.++ .+|..+. +++++|++++|++.+..+..|..+++|++|++++|.+ ..+|...+..+++|++|++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCC-SCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCcc-CeeChhhhcCCCCCCEEEC
Confidence 3455666666655 3444332 4566666666666655555566666666666666666 3444444345667777777
Q ss_pred CCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCC
Q 036216 465 RSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGV 544 (695)
Q Consensus 465 ~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (695)
++|++.+..+..|..+++|++|++++|++++..+..|..+++|
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------------------------------------- 135 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL------------------------------------- 135 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC-------------------------------------
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCC-------------------------------------
Confidence 7777765555666777788888888888776555556655554
Q ss_pred cchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCC
Q 036216 545 AADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSL 624 (695)
Q Consensus 545 ~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l 624 (695)
++|++++|++++..+..|..+++|++|++++|++++..+..|+.+++|+.|++++|++++..+..+..+
T Consensus 136 -----------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 204 (270)
T 2o6q_A 136 -----------TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSL 204 (270)
T ss_dssp -----------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred -----------CEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccc
Confidence 777888888886666668889999999999999997777778999999999999999997766778999
Q ss_pred CCCCEEEcccCcCcccCCC
Q 036216 625 TFLNHLNLSNNYLTGKIPS 643 (695)
Q Consensus 625 ~~L~~L~ls~N~l~~~iP~ 643 (695)
++|+.|++++|++....+.
T Consensus 205 ~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 205 EKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp TTCCEEECCSSCBCCSSSS
T ss_pred cCCCEEEecCCCeeCCCcc
Confidence 9999999999999866553
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=4.1e-25 Score=236.32 Aligned_cols=236 Identities=24% Similarity=0.195 Sum_probs=194.1
Q ss_pred CCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCC
Q 036216 331 SSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSL 410 (695)
Q Consensus 331 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L 410 (695)
+++|+.|++++|.+++..+.. |..+++|+.|++++|.+++..| +..+++|++|++++|.+++.. ..++|
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L 101 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAAD----LAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSI 101 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGG----GTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTC
T ss_pred CCCccEEEeeCCcCCCCCHHH----HhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCc
Confidence 347788888888877654443 3468899999999999886655 888999999999999998543 23899
Q ss_pred cEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCcccc-CCCCCCEEeCC
Q 036216 411 VSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELC-DLAFLQILDLA 489 (695)
Q Consensus 411 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~L~ 489 (695)
++|++++|.+.+..+. .+++|+.|++++|.+.+..|..+. .+++|+.|++++|.+++..|..+. .+++|++|+++
T Consensus 102 ~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls 177 (487)
T 3oja_A 102 ETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177 (487)
T ss_dssp CEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred CEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhc-CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecC
Confidence 9999999999876554 357899999999999777676665 699999999999999988888876 79999999999
Q ss_pred CCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccC
Q 036216 490 DNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTL 569 (695)
Q Consensus 490 ~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~ 569 (695)
+|.+++..+. ..+ +.|+.|+|++|.+++.
T Consensus 178 ~N~l~~~~~~--~~l------------------------------------------------~~L~~L~Ls~N~l~~~- 206 (487)
T 3oja_A 178 YNFIYDVKGQ--VVF------------------------------------------------AKLKTLDLSSNKLAFM- 206 (487)
T ss_dssp TSCCCEEECC--CCC------------------------------------------------TTCCEEECCSSCCCEE-
T ss_pred CCcccccccc--ccC------------------------------------------------CCCCEEECCCCCCCCC-
Confidence 9999854221 112 3348999999999964
Q ss_pred CccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCccc-ccCCcCCcCCCCCCEEEcc
Q 036216 570 PMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFT-GEIPQSMSSLTFLNHLNLS 633 (695)
Q Consensus 570 p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~ls 633 (695)
|..+..+++|+.|+|++|.++ .+|..++.+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus 207 ~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 207 GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 455999999999999999999 57888999999999999999998 6788888889999988887
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=1.6e-23 Score=207.50 Aligned_cols=224 Identities=21% Similarity=0.211 Sum_probs=154.7
Q ss_pred EEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCC
Q 036216 7 ELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFN 86 (695)
Q Consensus 7 ~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 86 (695)
.++.++..++.+|.. +. ++|++|++++|.+++. .+..+.++++|++|++++|.++...+..|.++++|++|++++|
T Consensus 11 ~~~c~~~~l~~ip~~-l~--~~l~~L~ls~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 86 (276)
T 2z62_A 11 TYQCMELNFYKIPDN-LP--FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (276)
T ss_dssp EEECTTSCCSSCCSS-SC--TTCCEEECTTCCCCEE-CTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred eEEecCCCccccCCC-CC--CCccEEECCCCccccc-CHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC
Confidence 456666667777652 22 4677777777777763 3446677777777777777777666667777777777777777
Q ss_pred CCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccc-cchhhhhhhcccccccceEEccCccc
Q 036216 87 HFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQE-ISEILEIFSGCVSNGLESLALASSSI 165 (695)
Q Consensus 87 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~~~~~~L~~L~L~~n~~ 165 (695)
.+++..+..|.++++|++|++++|.+.+..+..++++++|++|++++|.+.+. .|. .++.+.. |++|++++|.+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~----~~~~l~~-L~~L~Ls~N~l 161 (276)
T 2z62_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE----YFSNLTN-LEHLDLSSNKI 161 (276)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG----GGGGCTT-CCEEECCSSCC
T ss_pred ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCch----hhccCCC-CCEEECCCCCC
Confidence 77766666777777777777777777765555677777777777777777653 344 4445555 77777777777
Q ss_pred ccccchhcCCCCCCC----EEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCc
Q 036216 166 SGHLTDQLGQFKNLD----SLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQL 241 (695)
Q Consensus 166 ~~~~~~~l~~l~~L~----~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L 241 (695)
++..+..+..+++|+ +|++++|.++ .++...+.. .+|+.|++++|.++...+..+..+++|
T Consensus 162 ~~~~~~~~~~l~~L~~l~l~L~ls~n~l~--------------~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L 226 (276)
T 2z62_A 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMN--------------FIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSL 226 (276)
T ss_dssp CEECGGGGHHHHTCTTCCEEEECCSSCCC--------------EECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSC
T ss_pred CcCCHHHhhhhhhccccceeeecCCCccc--------------ccCccccCC-CcccEEECCCCceeecCHhHhcccccc
Confidence 776666666655555 7777777775 444433333 367888888888776666667777888
Q ss_pred cEEEccCCCCCCC
Q 036216 242 IELGLRSCDVGSR 254 (695)
Q Consensus 242 ~~L~l~~~~~~~~ 254 (695)
+.|++++|++...
T Consensus 227 ~~L~l~~N~~~c~ 239 (276)
T 2z62_A 227 QKIWLHTNPWDCS 239 (276)
T ss_dssp CEEECCSSCBCCC
T ss_pred cEEEccCCccccc
Confidence 8888888776643
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=8.9e-23 Score=201.17 Aligned_cols=202 Identities=24% Similarity=0.292 Sum_probs=141.4
Q ss_pred CCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeC
Q 036216 4 SLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGL 83 (695)
Q Consensus 4 ~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 83 (695)
..++++++++.++.+|.. + .+++++|++++|.++.. .+..+.++++|++|++++|.++...+..|..+++|++|++
T Consensus 17 ~~~~l~~~~~~l~~ip~~-~--~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSN-I--PADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCSSCCSC-C--CTTCSEEECCSSCCSCC-CTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCCccCCC-C--CCCCCEEECcCCCCCee-CHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 467788888888888763 2 25788888888888774 4556778888888888888888666666788888888888
Q ss_pred CCCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCc
Q 036216 84 PFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASS 163 (695)
Q Consensus 84 ~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n 163 (695)
++|.+++..+..|..+++|++|++++|.+++..+..|+.+++|++|++++|.+.+..+. .+..+.. |++|++++|
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~-L~~L~L~~n 167 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG----VFDKLTS-LKELRLYNN 167 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTT-CCEEECCSS
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHh----HccCCcc-cceeEecCC
Confidence 88888877667778888888888888888877777788888888888888877654443 2333433 666666666
Q ss_pred ccccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccce
Q 036216 164 SISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLT 228 (695)
Q Consensus 164 ~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~ 228 (695)
.+++..+..|..+++|++|++++|+++ .++...|..+++|+.|++++|.+.
T Consensus 168 ~l~~~~~~~~~~l~~L~~L~L~~N~l~--------------~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 168 QLKRVPEGAFDKLTELKTLKLDNNQLK--------------RVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCS--------------CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCcEeChhHhccCCCcCEEECCCCcCC--------------cCCHHHhccccCCCEEEecCCCee
Confidence 666555555555666666666666554 344434555555555555555543
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=6.1e-23 Score=203.94 Aligned_cols=204 Identities=20% Similarity=0.202 Sum_probs=145.3
Q ss_pred ccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCC
Q 036216 380 WMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRM 459 (695)
Q Consensus 380 ~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 459 (695)
+..++++++++++++.++ .+|..+. +.++.|++++|.+.+..+..|..+++|++|++++|.+.+ ++.. ..+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~--~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD--GTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC--SCCTTC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC--CCCCcC
Confidence 445566666666666666 3444332 566666666666666666666666677777777766643 2222 256777
Q ss_pred cEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEE
Q 036216 460 VLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELV 539 (695)
Q Consensus 460 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 539 (695)
++|++++|++. .+|..+..+++|++|++++|++++..|..|..+++|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L-------------------------------- 126 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL-------------------------------- 126 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC--------------------------------
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC--------------------------------
Confidence 77777777776 556667777888888888888875555666666555
Q ss_pred EecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCc
Q 036216 540 VTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQ 619 (695)
Q Consensus 540 ~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~ 619 (695)
++|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|+++ .+|.
T Consensus 127 ----------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~ 189 (290)
T 1p9a_G 127 ----------------QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPK 189 (290)
T ss_dssp ----------------CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred ----------------CEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccCh
Confidence 67778888888666667788888888888888888665666788888888888888888 6788
Q ss_pred CCcCCCCCCEEEcccCcCcc
Q 036216 620 SMSSLTFLNHLNLSNNYLTG 639 (695)
Q Consensus 620 ~l~~l~~L~~L~ls~N~l~~ 639 (695)
.+..+++|+.+++++|++..
T Consensus 190 ~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 190 GFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp TTTTTCCCSEEECCSCCBCC
T ss_pred hhcccccCCeEEeCCCCccC
Confidence 88888888888888888764
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=3.5e-23 Score=204.18 Aligned_cols=209 Identities=21% Similarity=0.206 Sum_probs=102.2
Q ss_pred CCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCCCCCchhhhcCCCCCC
Q 036216 24 ANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLE 103 (695)
Q Consensus 24 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 103 (695)
..+++|+.|++++|.+.. ++ .+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..|+.+++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~--~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKS--VQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHTTCCEEECTTSCCCC--CT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred ccccceeeeeeCCCCccc--cc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 334444455554444443 22 234444455555554444421 2444444555555555544444444444444555
Q ss_pred EEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcccccccchhcCCCCCCCEEE
Q 036216 104 HLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLD 183 (695)
Q Consensus 104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 183 (695)
+|++++|.+++..+..++.+++|++|++++|.+.+..+. .++.+.. |+.|++++|.+++..+..++.+++|++|+
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 187 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKG----VFDKLTN-LTELDLSYNQLQSLPEGVFDKLTQLKDLR 187 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTT-CCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHH----HhccCcc-CCEEECCCCCcCccCHHHhcCCccCCEEE
Confidence 555555544444444444444555555555444433332 2223333 55555555555544444455566666666
Q ss_pred ccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCccEEEccCCCCCCCCCccccCCC
Q 036216 184 LSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQK 263 (695)
Q Consensus 184 L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 263 (695)
+++|+++ .+++..+..+++|+.|++++|.+.+ .++.++.+++..|.+.+.+|.+++.+.
T Consensus 188 L~~N~l~--------------~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 188 LYQNQLK--------------SVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp CCSSCCS--------------CCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred CCCCcCC--------------ccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccccC
Confidence 6666554 3333345556666666666665442 233555666666666666666655443
No 80
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=3.8e-25 Score=230.61 Aligned_cols=252 Identities=14% Similarity=0.216 Sum_probs=185.1
Q ss_pred cCCCccchhhhhhhhhccccceeecccccccCCCC----ccccCCCCCCEEeCCCCc---ccccCCccc-------cCCC
Q 036216 343 SLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLP----DCWMSYQNLMALDLSNNK---FTGNLPTSL-------GSLS 408 (695)
Q Consensus 343 ~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~ls~n~---~~~~~~~~~-------~~l~ 408 (695)
.++......+...+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|. +.+.+|..+ ..++
T Consensus 15 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~ 94 (386)
T 2ca6_A 15 AITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCP 94 (386)
T ss_dssp SCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCT
T ss_pred CCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCC
Confidence 33333334445555667778888888887765433 336677888888888753 334444443 6788
Q ss_pred CCcEEECcCCccee----eCCccccCCCCCcEEEcCCCcccccCChhhhh---cC---------CCCcEEEcCCCccc-c
Q 036216 409 SLVSLHLRKNRLSG----TIPILLKNCTSLVTLDVGENEVFGNIPSWFGE---RF---------SRMVLLILRSNNFD-G 471 (695)
Q Consensus 409 ~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~---~l---------~~L~~L~l~~n~~~-~ 471 (695)
+|++|++++|.+.. .++..+..+++|++|++++|.+....+..+.. .+ ++|++|++++|+++ +
T Consensus 95 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~ 174 (386)
T 2ca6_A 95 KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG 174 (386)
T ss_dssp TCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG
T ss_pred cccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH
Confidence 88888888888875 35667788888999999988885444433332 22 88999999999887 3
Q ss_pred cCC---ccccCCCCCCEEeCCCCcCcc-----cCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecC
Q 036216 472 PLP---TELCDLAFLQILDLADNNLSG-----TIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKG 543 (695)
Q Consensus 472 ~~~---~~l~~l~~L~~L~L~~n~l~~-----~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (695)
.++ ..+..+++|++|++++|+++. ..|..+..++
T Consensus 175 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~-------------------------------------- 216 (386)
T 2ca6_A 175 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ-------------------------------------- 216 (386)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCT--------------------------------------
T ss_pred HHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCC--------------------------------------
Confidence 344 456778899999999998872 1222333333
Q ss_pred CcchhhhhcccccEEEcCCcccc----ccCCccccCCCCCCEEeccCCccccc----CCcccc--CcCCCCEEECCCCcc
Q 036216 544 VAADYNEILNLVRIIDFSKNLFS----GTLPMGLTNLKAVQSLNLSYNIFTGR----IPETIG--TMRSLESIDFSVNKF 613 (695)
Q Consensus 544 ~~~~~~~~~~~l~~L~Ls~n~l~----~~~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~~~--~l~~L~~L~Ls~n~l 613 (695)
.|+.|+|++|.++ +.+|..+..+++|++|+|++|.+++. +|..+. .+++|+.|+|++|.+
T Consensus 217 ----------~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i 286 (386)
T 2ca6_A 217 ----------ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI 286 (386)
T ss_dssp ----------TCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred ----------CccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcC
Confidence 3488999999996 57788899999999999999999866 566663 489999999999999
Q ss_pred cc----cCCcCC-cCCCCCCEEEcccCcCcccCC
Q 036216 614 TG----EIPQSM-SSLTFLNHLNLSNNYLTGKIP 642 (695)
Q Consensus 614 ~~----~~p~~l-~~l~~L~~L~ls~N~l~~~iP 642 (695)
++ .+|..+ .++++|++|++++|++++..|
T Consensus 287 ~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 287 ELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp BHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 97 488877 668999999999999998765
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=3.1e-22 Score=198.83 Aligned_cols=202 Identities=20% Similarity=0.150 Sum_probs=170.9
Q ss_pred hccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEE
Q 036216 358 ETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTL 437 (695)
Q Consensus 358 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 437 (695)
.++++++++++++.++ .+|..+. ++++.|++++|.+++..+..|..+++|++|++++|.+++..+. ..+++|++|
T Consensus 8 ~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L 82 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTL 82 (290)
T ss_dssp CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEE
T ss_pred ccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEE
Confidence 4677888888888887 4555443 6889999999999888788899999999999999999865443 688999999
Q ss_pred EcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCc
Q 036216 438 DVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNA 517 (695)
Q Consensus 438 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~ 517 (695)
++++|.+ ..+|..+. .+++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|
T Consensus 83 ~Ls~N~l-~~l~~~~~-~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L---------- 150 (290)
T 1p9a_G 83 DLSHNQL-QSLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL---------- 150 (290)
T ss_dssp ECCSSCC-SSCCCCTT-TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC----------
T ss_pred ECCCCcC-CcCchhhc-cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCC----------
Confidence 9999998 57777664 78999999999999998777889999999999999999996666666666655
Q ss_pred ccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccc
Q 036216 518 IEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETI 597 (695)
Q Consensus 518 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~ 597 (695)
+.|++++|++++..+..|..+++|++|+|++|+++ .+|..+
T Consensus 151 --------------------------------------~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~ 191 (290)
T 1p9a_G 151 --------------------------------------EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGF 191 (290)
T ss_dssp --------------------------------------CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTT
T ss_pred --------------------------------------CEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhh
Confidence 88999999999766667889999999999999999 788888
Q ss_pred cCcCCCCEEECCCCcccc
Q 036216 598 GTMRSLESIDFSVNKFTG 615 (695)
Q Consensus 598 ~~l~~L~~L~Ls~n~l~~ 615 (695)
..+.+|+.|+|++|.+..
T Consensus 192 ~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 192 FGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp TTTCCCSEEECCSCCBCC
T ss_pred cccccCCeEEeCCCCccC
Confidence 889999999999998863
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=1.5e-22 Score=197.12 Aligned_cols=212 Identities=18% Similarity=0.218 Sum_probs=139.1
Q ss_pred CCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEc
Q 036216 385 NLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLIL 464 (695)
Q Consensus 385 ~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 464 (695)
+.++++++++.++ .+|..+. +.++.|++++|++.+..+..|.++++|++|++++|.+
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-------------------- 71 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-------------------- 71 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC--------------------
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcC--------------------
Confidence 4556666666666 4444433 4566666666666655555555555555555555554
Q ss_pred CCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCC
Q 036216 465 RSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGV 544 (695)
Q Consensus 465 ~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (695)
.+..+..|..+++|++|++++|++++..+..|..+++|
T Consensus 72 -----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L------------------------------------- 109 (251)
T 3m19_A 72 -----QTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQL------------------------------------- 109 (251)
T ss_dssp -----CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-------------------------------------
T ss_pred -----CccCHhHhccCCcCCEEECCCCcccccChhHhcccCCC-------------------------------------
Confidence 44444455666666666666666664444445444444
Q ss_pred cchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCC
Q 036216 545 AADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSL 624 (695)
Q Consensus 545 ~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l 624 (695)
++|++++|++++..+..|..+++|++|+|++|++++..+..|+.+++|+.|+|++|++++..|..+..+
T Consensus 110 -----------~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 178 (251)
T 3m19_A 110 -----------DKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRL 178 (251)
T ss_dssp -----------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred -----------CEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCC
Confidence 666677777775666667888999999999999997777789999999999999999998777889999
Q ss_pred CCCCEEEcccCcCcccCCCCcccCcc------ccccccCCcccCCCCCCCCCCC
Q 036216 625 TFLNHLNLSNNYLTGKIPSSTQLQSF------NASCFLGNNLCGAPLPKNCTDE 672 (695)
Q Consensus 625 ~~L~~L~ls~N~l~~~iP~~~~~~~~------~~~~~~~n~l~~~~~~~~c~~~ 672 (695)
++|++|++++|++.+..+....+..+ ......|+.+++.|....|.+.
T Consensus 179 ~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~ 232 (251)
T 3m19_A 179 GKLQTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQNLHESPDGVTCSDG 232 (251)
T ss_dssp TTCCEEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC-------CCGGGCBBTTS
T ss_pred CCCCEEEeeCCceeCCccccHHHHHHHHhcccceeeccCcccccCCCcCccCCC
Confidence 99999999999998875543222221 1223345567777777778765
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=5.3e-24 Score=219.53 Aligned_cols=235 Identities=20% Similarity=0.197 Sum_probs=117.7
Q ss_pred cceeecccccccCCCC----ccccCCC-CCCEEeCCCCcccccCCccccCC-----CCCcEEECcCCcceeeCCcc----
Q 036216 362 LKFLFLDRNILQGKLP----DCWMSYQ-NLMALDLSNNKFTGNLPTSLGSL-----SSLVSLHLRKNRLSGTIPIL---- 427 (695)
Q Consensus 362 L~~L~l~~n~l~~~~~----~~~~~~~-~L~~L~ls~n~~~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~---- 427 (695)
|++|++++|.+++..+ .++..++ +|++|++++|.+++..+..+..+ ++|++|++++|.+++..+..
T Consensus 24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 103 (362)
T 3goz_A 24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKT 103 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHH
Confidence 5555555555443333 3444444 55555555555554444333332 55555555555554333332
Q ss_pred ccCC-CCCcEEEcCCCcccccCChhhhhc----CCCCcEEEcCCCcccccC----CccccCCC-CCCEEeCCCCcCcccC
Q 036216 428 LKNC-TSLVTLDVGENEVFGNIPSWFGER----FSRMVLLILRSNNFDGPL----PTELCDLA-FLQILDLADNNLSGTI 497 (695)
Q Consensus 428 ~~~l-~~L~~L~l~~n~~~~~~~~~~~~~----l~~L~~L~l~~n~~~~~~----~~~l~~l~-~L~~L~L~~n~l~~~~ 497 (695)
+..+ ++|++|++++|.+.+..+..+... .++|++|++++|.+.+.. +..+..++ +|++|++++|++++..
T Consensus 104 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 183 (362)
T 3goz_A 104 LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKN 183 (362)
T ss_dssp HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhh
Confidence 2222 555555555555543333332211 235566666666555322 22233333 6666666666665444
Q ss_pred ChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhc-ccccEEEcCCcccccc----CCcc
Q 036216 498 PNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEIL-NLVRIIDFSKNLFSGT----LPMG 572 (695)
Q Consensus 498 p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~L~Ls~n~l~~~----~p~~ 572 (695)
+..+...- ... ..|+.|||++|.+++. ++..
T Consensus 184 ~~~l~~~l--------------------------------------------~~~~~~L~~L~Ls~N~i~~~~~~~l~~~ 219 (362)
T 3goz_A 184 CAELAKFL--------------------------------------------ASIPASVTSLDLSANLLGLKSYAELAYI 219 (362)
T ss_dssp HHHHHHHH--------------------------------------------HTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred HHHHHHHH--------------------------------------------HhCCCCCCEEECCCCCCChhHHHHHHHH
Confidence 43332210 001 1235666666666542 3334
Q ss_pred ccC-CCCCCEEeccCCcccccCC----ccccCcCCCCEEECCCCcccc-------cCCcCCcCCCCCCEEEcccCcCccc
Q 036216 573 LTN-LKAVQSLNLSYNIFTGRIP----ETIGTMRSLESIDFSVNKFTG-------EIPQSMSSLTFLNHLNLSNNYLTGK 640 (695)
Q Consensus 573 l~~-l~~L~~L~Ls~n~l~~~~p----~~~~~l~~L~~L~Ls~n~l~~-------~~p~~l~~l~~L~~L~ls~N~l~~~ 640 (695)
+.. .++|++|+|++|.+++..+ ..+..+++|+.|++++|.+.+ .++..+..+++|+.||+++|++.+.
T Consensus 220 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 220 FSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 443 2467777777776664433 223455667777777776332 2334566667777777777776654
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=7.2e-23 Score=206.30 Aligned_cols=230 Identities=19% Similarity=0.197 Sum_probs=149.9
Q ss_pred CcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccc--cCCCCCCEEeCCCCcccccCC----ccccCC
Q 036216 334 LTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCW--MSYQNLMALDLSNNKFTGNLP----TSLGSL 407 (695)
Q Consensus 334 L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~--~~~~~L~~L~ls~n~~~~~~~----~~~~~l 407 (695)
++.+.+.++.++......... +..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..+
T Consensus 66 l~~l~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 66 VRRLTVGAAQVPAQLLVGALR-VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCEEEECSCCCBHHHHHHHHH-HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred eeEEEEeCCcCCHHHHHHHHH-hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 455666665554321111111 1234567888888888777777666 677778888888887775443 233456
Q ss_pred CCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEe
Q 036216 408 SSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILD 487 (695)
Q Consensus 408 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 487 (695)
++|++|++++|++.+..+..+..+++|++|++++|++.+.... ..+..+..+++|++|+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---------------------~~~~~~~~l~~L~~L~ 203 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGL---------------------MAALCPHKFPAIQNLA 203 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHH---------------------HTTSCTTSSCCCCSCB
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhh---------------------hHHHhhhcCCCCCEEE
Confidence 7777777777777666666676777777777777765321000 0112234566777777
Q ss_pred CCCCcCcccCChh----hhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCc
Q 036216 488 LADNNLSGTIPNC----IHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKN 563 (695)
Q Consensus 488 L~~n~l~~~~p~~----~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n 563 (695)
+++|+++ .++.. +..+++ |++||+++|
T Consensus 204 Ls~N~l~-~l~~~~~~l~~~l~~------------------------------------------------L~~L~Ls~N 234 (310)
T 4glp_A 204 LRNTGME-TPTGVCAALAAAGVQ------------------------------------------------PHSLDLSHN 234 (310)
T ss_dssp CCSSCCC-CHHHHHHHHHHHTCC------------------------------------------------CSSEECTTS
T ss_pred CCCCCCC-chHHHHHHHHhcCCC------------------------------------------------CCEEECCCC
Confidence 7777765 22221 223333 367778888
Q ss_pred cccccCCccccCC---CCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccCcCcc
Q 036216 564 LFSGTLPMGLTNL---KAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTG 639 (695)
Q Consensus 564 ~l~~~~p~~l~~l---~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 639 (695)
++++..|..+..+ ++|++|+|++|+++ .+|..+. ++|+.|+|++|++++. |. +..+++|++|++++|+++.
T Consensus 235 ~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 235 SLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 8877767777666 68999999999988 6777664 7899999999999853 44 6778899999999998864
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=3.3e-23 Score=211.91 Aligned_cols=251 Identities=19% Similarity=0.222 Sum_probs=195.5
Q ss_pred CCcEEEccCCcCCCccchhhhhhhhhc--cccceeecccccccCCCCccccCCCCCCEEeCCCCccccc-CCccccCCCC
Q 036216 333 NLTVLELSGNSLSGPIFHFLCYTINET--MKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGN-LPTSLGSLSS 409 (695)
Q Consensus 333 ~L~~L~l~~n~l~~~~~~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~-~~~~~~~l~~ 409 (695)
.++.++++++.+.+ .. +..+ +.++.+++++|.+.+..+. +..+++|++|++++|.+.+. ++..+..+++
T Consensus 48 ~~~~l~l~~~~~~~---~~----~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~ 119 (336)
T 2ast_B 48 LWQTLDLTGKNLHP---DV----TGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSK 119 (336)
T ss_dssp TSSEEECTTCBCCH---HH----HHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCC
T ss_pred hheeeccccccCCH---HH----HHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCC
Confidence 46778888777652 22 2234 7899999999999877665 55789999999999998765 7778889999
Q ss_pred CcEEECcCCcceeeCCccccCCCCCcEEEcCCC-ccccc-CChhhhhcCCCCcEEEcCCC-ccccc-CCccccCCC-CCC
Q 036216 410 LVSLHLRKNRLSGTIPILLKNCTSLVTLDVGEN-EVFGN-IPSWFGERFSRMVLLILRSN-NFDGP-LPTELCDLA-FLQ 484 (695)
Q Consensus 410 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~l~~l~-~L~ 484 (695)
|++|++++|.+.+..+..+..+++|++|++++| .+.+. ++..+. .+++|++|++++| .+++. ++..+..++ +|+
T Consensus 120 L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~ 198 (336)
T 2ast_B 120 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS-SCSRLDELNLSWCFDFTEKHVQVAVAHVSETIT 198 (336)
T ss_dssp CSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH-HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCC
T ss_pred CCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh-cCCCCCEEcCCCCCCcChHHHHHHHHhcccCCC
Confidence 999999999988777888889999999999999 56543 444444 7999999999999 88764 566788899 999
Q ss_pred EEeCCCC--cCc-ccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcC
Q 036216 485 ILDLADN--NLS-GTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFS 561 (695)
Q Consensus 485 ~L~L~~n--~l~-~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls 561 (695)
+|++++| .++ +.+|..+..+++| +.|+++
T Consensus 199 ~L~l~~~~~~~~~~~l~~~~~~~~~L------------------------------------------------~~L~l~ 230 (336)
T 2ast_B 199 QLNLSGYRKNLQKSDLSTLVRRCPNL------------------------------------------------VHLDLS 230 (336)
T ss_dssp EEECCSCGGGSCHHHHHHHHHHCTTC------------------------------------------------SEEECT
T ss_pred EEEeCCCcccCCHHHHHHHHhhCCCC------------------------------------------------CEEeCC
Confidence 9999999 454 3445555555544 889999
Q ss_pred Ccc-ccccCCccccCCCCCCEEeccCCc-ccccCCccccCcCCCCEEECCCCcccccCCcCCcCC-CCCCEEEcccCcCc
Q 036216 562 KNL-FSGTLPMGLTNLKAVQSLNLSYNI-FTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSL-TFLNHLNLSNNYLT 638 (695)
Q Consensus 562 ~n~-l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~ls~N~l~ 638 (695)
+|. +++..+..+..+++|++|++++|. +.......++++++|+.|++++| +. .+.+..+ ..+..|++++|+++
T Consensus 231 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~l~ 306 (336)
T 2ast_B 231 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINCSHFT 306 (336)
T ss_dssp TCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESCCCSC
T ss_pred CCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEecccCc
Confidence 999 777788889999999999999995 33222236788999999999999 33 2244444 34778889999999
Q ss_pred ccCCCC
Q 036216 639 GKIPSS 644 (695)
Q Consensus 639 ~~iP~~ 644 (695)
+..|..
T Consensus 307 ~~~~~~ 312 (336)
T 2ast_B 307 TIARPT 312 (336)
T ss_dssp CTTCSS
T ss_pred cccCCc
Confidence 998875
No 86
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=3.4e-23 Score=213.55 Aligned_cols=213 Identities=18% Similarity=0.153 Sum_probs=140.0
Q ss_pred EEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCc----hhhcCCC-CCCEEEcCCCcCcccCCccCCCC-----C
Q 036216 7 ELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVP----AWVFGLS-RLHFLNLGYNNFQGPIPEGLQNL-----T 76 (695)
Q Consensus 7 ~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l-----~ 76 (695)
.++++.|.+++..+..+...++|++|+|++|.+++. .+ +.+..++ +|++|+|++|.++...+..+..+ +
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSI-STVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGS-CHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChH-HHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 467777887776665555556688888888888764 33 5566777 78888888888876666666554 7
Q ss_pred CCCEEeCCCCCCCCCchhhh----cCC-CCCCEEEcccCcCCcccchhhc----C-CCCCCEEEccCCcCccccchhhhh
Q 036216 77 SLKHLGLPFNHFSSSVPKWF----DRL-THLEHLSLSYNSLEGRIPRSMA----R-LCNLRRLYLGGAKLNQEISEILEI 146 (695)
Q Consensus 77 ~L~~L~L~~n~l~~~~p~~~----~~l-~~L~~L~Ls~n~l~~~~~~~~~----~-l~~L~~L~L~~n~l~~~~~~~~~~ 146 (695)
+|++|++++|.+++..+..+ ..+ ++|++|++++|.+++..+..+. . .++|++|++++|.+.+.....+..
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 88888888888876666543 334 7888888888888765554433 3 357888888888887665555544
Q ss_pred hhcccccccceEEccCcccccccchhc----CCC-CCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEE
Q 036216 147 FSGCVSNGLESLALASSSISGHLTDQL----GQF-KNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFL 221 (695)
Q Consensus 147 ~~~~~~~~L~~L~L~~n~~~~~~~~~l----~~l-~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~ 221 (695)
.+.....+|++|++++|.+++..+..+ ..+ ++|++|++++|.+.+.. ...++.......++|+.|+
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~---------~~~l~~~l~~~~~~L~~L~ 231 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKS---------YAELAYIFSSIPNHVVSLN 231 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC---------HHHHHHHHHHSCTTCCEEE
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhH---------HHHHHHHHhcCCCCceEEE
Confidence 555555348888888887776665433 334 47888888877775210 0013332222245677777
Q ss_pred ccccccee
Q 036216 222 VGANKLTL 229 (695)
Q Consensus 222 l~~n~l~~ 229 (695)
+++|.+..
T Consensus 232 Ls~N~l~~ 239 (362)
T 3goz_A 232 LCLNCLHG 239 (362)
T ss_dssp CCSSCCCC
T ss_pred CcCCCCCc
Confidence 77776654
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=3.7e-22 Score=192.97 Aligned_cols=196 Identities=15% Similarity=0.201 Sum_probs=119.9
Q ss_pred CCCEEeCCCCcccccCCccccCCCCCcEEECcCCc-ceeeCCccccCCCCCcEEEcCC-CcccccCChhhhhcCCCCcEE
Q 036216 385 NLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNR-LSGTIPILLKNCTSLVTLDVGE-NEVFGNIPSWFGERFSRMVLL 462 (695)
Q Consensus 385 ~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~~l~~L~~L 462 (695)
++++|++++|.+++..+..|..+++|++|++++|+ ++...+..|.++++|++|++++ |.+. .++...+..+++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCEE
Confidence 66777777777766555566667777777777775 6655555666677777777766 6663 3333222356666666
Q ss_pred EcCCCcccccCCccccCCCCCC---EEeCCCC-cCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceE
Q 036216 463 ILRSNNFDGPLPTELCDLAFLQ---ILDLADN-NLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQEL 538 (695)
Q Consensus 463 ~l~~n~~~~~~~~~l~~l~~L~---~L~L~~n-~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 538 (695)
++++|++++ +|. +..+++|+ +|++++| ++++..+..|.++++|
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L------------------------------- 157 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE------------------------------- 157 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSS-------------------------------
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcc-------------------------------
Confidence 666666664 444 66666666 6777776 6664444445554444
Q ss_pred EEecCCcchhhhhccccc-EEEcCCccccccCCccccCCCCCCEEeccCCc-ccccCCccccCc-CCCCEEECCCCcccc
Q 036216 539 VVTKGVAADYNEILNLVR-IIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNI-FTGRIPETIGTM-RSLESIDFSVNKFTG 615 (695)
Q Consensus 539 ~~~~~~~~~~~~~~~~l~-~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l-~~L~~L~Ls~n~l~~ 615 (695)
+ .|++++|+++...+..+.. ++|++|++++|+ +++..+..|+.+ ++|+.|++++|+++
T Consensus 158 -----------------~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~- 218 (239)
T 2xwt_C 158 -----------------TLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT- 218 (239)
T ss_dssp -----------------EEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-
T ss_pred -----------------eeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-
Confidence 5 6666666666333333333 667777777774 665555666666 77777777777776
Q ss_pred cCCcCCcCCCCCCEEEcccC
Q 036216 616 EIPQSMSSLTFLNHLNLSNN 635 (695)
Q Consensus 616 ~~p~~l~~l~~L~~L~ls~N 635 (695)
.+|.. .+++|++|+++++
T Consensus 219 ~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 219 ALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CCCCT--TCTTCSEEECTTC
T ss_pred cCChh--HhccCceeeccCc
Confidence 34433 4566677776665
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=4.6e-23 Score=214.89 Aligned_cols=251 Identities=18% Similarity=0.179 Sum_probs=128.1
Q ss_pred CchhhcCCCCCCEEEcCCCcCccc----CCccCCCCCCCCEEeCCCCCC---CCCchhhh-------cCCCCCCEEEccc
Q 036216 44 VPAWVFGLSRLHFLNLGYNNFQGP----IPEGLQNLTSLKHLGLPFNHF---SSSVPKWF-------DRLTHLEHLSLSY 109 (695)
Q Consensus 44 ~~~~~~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~n~l---~~~~p~~~-------~~l~~L~~L~Ls~ 109 (695)
++..+..+++|++|+|++|.+... ++..+..+++|++|++++|.+ .+.+|..+ ..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 344444555555555555555543 222345555566665555422 22333333 4556666666666
Q ss_pred CcCCc----ccchhhcCCCCCCEEEccCCcCccccchhhhhhhccc---------ccccceEEccCcccc-cccc---hh
Q 036216 110 NSLEG----RIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCV---------SNGLESLALASSSIS-GHLT---DQ 172 (695)
Q Consensus 110 n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~---------~~~L~~L~L~~n~~~-~~~~---~~ 172 (695)
|.+.. .+|..+..+++|++|++++|.+....+..+...+... +. |++|++++|.+. ..++ ..
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~-L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPP-LRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCC-CCEEECCSSCCTGGGHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCC-CcEEECCCCCCCcHHHHHHHHH
Confidence 66554 2445555566666666666655443333222222222 22 555555555554 2222 24
Q ss_pred cCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccce----eecCCCCCCCCCccEEEccC
Q 036216 173 LGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLT----LKVKRDWIPPFQLIELGLRS 248 (695)
Q Consensus 173 l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~----~~~~~~~~~~~~L~~L~l~~ 248 (695)
+..+++|++|++++|++.... . ..+.+..+..+++|+.|++++|.++ ...+..+..+++|++|++++
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g--------~-~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~ 253 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEG--------I-EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND 253 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHH--------H-HHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred HHhCCCcCEEECcCCCCCHhH--------H-HHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCC
Confidence 455566666666666553100 0 0011113455566666666666553 22333444455555555555
Q ss_pred CCCCCC----CCcccc--CCCCCCEEEcccCCCcc----ccChHHhhcccccceeecccccccccc
Q 036216 249 CDVGSR----FPLWLY--SQKDLQFLDLFNSGISG----TFPNRLLKSASQLYLLDLGHNQIHGEL 304 (695)
Q Consensus 249 ~~~~~~----~~~~l~--~~~~L~~L~l~~~~i~~----~~~~~~~~~l~~L~~L~l~~n~l~~~~ 304 (695)
|.+.+. ++..+. .+++|++|++++|.+.+ .+|..++..+++|+.|++++|.+++..
T Consensus 254 n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 254 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 555443 334442 26677777777777765 356555555667777777777666443
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=8.2e-21 Score=184.87 Aligned_cols=178 Identities=26% Similarity=0.343 Sum_probs=142.0
Q ss_pred CCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeC
Q 036216 4 SLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGL 83 (695)
Q Consensus 4 ~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 83 (695)
..++++++++.++.+|.. +. +++++|++++|.+++. .+..+.++++|++|+|++|.+++..+..|..+++|++|++
T Consensus 15 ~~~~l~~~~~~l~~~p~~-~~--~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSG-IP--ADTEKLDLQSTGLATL-SDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCSSCCSC-CC--TTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCCCccccCCC-CC--CCCCEEEccCCCcCcc-CHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 467899999999998873 32 6899999999999886 6667889999999999999999888888999999999999
Q ss_pred CCCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCc
Q 036216 84 PFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASS 163 (695)
Q Consensus 84 ~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n 163 (695)
++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++.+..+. .++.+.. |++|++++|
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~-L~~L~L~~N 165 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAG----AFDKLTN-LQTLSLSTN 165 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTT-CCEEECCSS
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHH----HcCcCcC-CCEEECCCC
Confidence 99999987778889999999999999999977677788899999999999888765554 3344444 666666666
Q ss_pred ccccccchhcCCCCCCCEEEccCCCcC
Q 036216 164 SISGHLTDQLGQFKNLDSLDLSNNSIV 190 (695)
Q Consensus 164 ~~~~~~~~~l~~l~~L~~L~L~~n~i~ 190 (695)
.+.+..+..+..+++|++|++++|++.
T Consensus 166 ~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 166 QLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred cCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 666666656666666666666666654
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=1.2e-21 Score=196.65 Aligned_cols=209 Identities=19% Similarity=0.297 Sum_probs=145.7
Q ss_pred eeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCc
Q 036216 364 FLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENE 443 (695)
Q Consensus 364 ~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 443 (695)
.+.+..+.+.+.. .+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.
T Consensus 23 ~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~ 96 (308)
T 1h6u_A 23 KIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNP 96 (308)
T ss_dssp HHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCC
T ss_pred HHHhCCCCcCcee--cHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCc
Confidence 3444444444332 23456677777777777763 34 46677777777777777764433 7777777777777777
Q ss_pred ccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCC
Q 036216 444 VFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFP 523 (695)
Q Consensus 444 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~ 523 (695)
+.+ ++ .+. .+++|+.|++++|++++. + .+..+++|++|++++|++++..+ +..+++|
T Consensus 97 l~~-~~-~~~-~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L---------------- 153 (308)
T 1h6u_A 97 LKN-VS-AIA-GLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNL---------------- 153 (308)
T ss_dssp CSC-CG-GGT-TCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTC----------------
T ss_pred CCC-ch-hhc-CCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCc----------------
Confidence 633 44 232 577888888888887753 3 37788888888888888774322 4444333
Q ss_pred CCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCC
Q 036216 524 LNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSL 603 (695)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 603 (695)
+.|++++|++++..+ +..+++|++|++++|++++. +. +..+++|
T Consensus 154 --------------------------------~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L 197 (308)
T 1h6u_A 154 --------------------------------QYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDI-SP-LASLPNL 197 (308)
T ss_dssp --------------------------------CEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GGGCTTC
T ss_pred --------------------------------cEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcC-hh-hcCCCCC
Confidence 778888888875333 78888888888988888844 33 7888889
Q ss_pred CEEECCCCcccccCCcCCcCCCCCCEEEcccCcCcc
Q 036216 604 ESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTG 639 (695)
Q Consensus 604 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 639 (695)
+.|++++|++++.. .+..+++|++|++++|++++
T Consensus 198 ~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 198 IEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred CEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 99999999888544 37888889999999988875
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=1.5e-20 Score=188.75 Aligned_cols=167 Identities=25% Similarity=0.339 Sum_probs=79.4
Q ss_pred CCCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEe
Q 036216 3 PSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLG 82 (695)
Q Consensus 3 ~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 82 (695)
++|++|++++|.++.++ .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+++. ..+..+++|++|+
T Consensus 41 ~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~~--~~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~ 113 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITD--LAP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLD 113 (308)
T ss_dssp HTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCC--CGG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEE
T ss_pred CCcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCCC--Chh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEE
Confidence 34555555555555543 24455555555555555554 333 44555555555555555432 2455555555555
Q ss_pred CCCCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccC
Q 036216 83 LPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALAS 162 (695)
Q Consensus 83 L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~ 162 (695)
+++|.+++. + .+..+++|++|++++|.+++..+ ++.+++|++|++++|++.+..+ +..+.. |+.|++++
T Consensus 114 l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~------l~~l~~-L~~L~l~~ 182 (308)
T 1h6u_A 114 LTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP------LANLSK-LTTLKADD 182 (308)
T ss_dssp CTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG------GTTCTT-CCEEECCS
T ss_pred CCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh------hcCCCC-CCEEECCC
Confidence 555555532 2 15555555555555555553222 4555555555555555443211 222222 44444444
Q ss_pred cccccccchhcCCCCCCCEEEccCCCc
Q 036216 163 SSISGHLTDQLGQFKNLDSLDLSNNSI 189 (695)
Q Consensus 163 n~~~~~~~~~l~~l~~L~~L~L~~n~i 189 (695)
|.+++..+ +..+++|++|++++|++
T Consensus 183 n~l~~~~~--l~~l~~L~~L~L~~N~l 207 (308)
T 1h6u_A 183 NKISDISP--LASLPNLIEVHLKNNQI 207 (308)
T ss_dssp SCCCCCGG--GGGCTTCCEEECTTSCC
T ss_pred CccCcChh--hcCCCCCCEEEccCCcc
Confidence 44443322 44444444444444444
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=1.6e-21 Score=199.34 Aligned_cols=251 Identities=19% Similarity=0.214 Sum_probs=162.9
Q ss_pred CCCEEECCCCCCCCCCCchhhcCC--CCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCCCCC-chhhhcCCCCCCE
Q 036216 28 TLTTLDLSHNQFDNSFVPAWVFGL--SRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSS-VPKWFDRLTHLEH 104 (695)
Q Consensus 28 ~L~~L~Ls~n~i~~~~~~~~~~~l--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~ 104 (695)
.++.++++++.+. +..+..+ +++++|++++|.+.+..+. +..+++|++|++++|.+++. +|..+..+++|++
T Consensus 48 ~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hheeeccccccCC----HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 4677888877764 4455555 7788888888887755544 45678888888888877654 6667777888888
Q ss_pred EEcccCcCCcccchhhcCCCCCCEEEccCC-cCccc-cchhhhhhhcccccccceEEccCc-ccccc-cchhcCCCC-CC
Q 036216 105 LSLSYNSLEGRIPRSMARLCNLRRLYLGGA-KLNQE-ISEILEIFSGCVSNGLESLALASS-SISGH-LTDQLGQFK-NL 179 (695)
Q Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~~~~~~~~~L~~L~L~~n-~~~~~-~~~~l~~l~-~L 179 (695)
|++++|.+.+..+..++.+++|++|++++| .+++. .+. .+..++. |++|++++| .+++. ++..+..++ +|
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~----~~~~~~~-L~~L~l~~~~~l~~~~~~~~~~~l~~~L 197 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT----LLSSCSR-LDELNLSWCFDFTEKHVQVAVAHVSETI 197 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH----HHHHCTT-CCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHH----HHhcCCC-CCEEcCCCCCCcChHHHHHHHHhcccCC
Confidence 888888777667777777888888888887 55542 222 3444554 777777777 66654 456677777 88
Q ss_pred CEEEccCCC--cCCCceEEeeccccccccChhhhhCCCCCCEEEccccc-ceeecCCCCCCCCCccEEEccCCC-CCCCC
Q 036216 180 DSLDLSNNS--IVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANK-LTLKVKRDWIPPFQLIELGLRSCD-VGSRF 255 (695)
Q Consensus 180 ~~L~L~~n~--i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~~~-~~~~~ 255 (695)
++|++++|. +++ +.++. .+.++++|+.|++++|. ++......+..+++|++|++++|. +....
T Consensus 198 ~~L~l~~~~~~~~~------------~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 264 (336)
T 2ast_B 198 TQLNLSGYRKNLQK------------SDLST-LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET 264 (336)
T ss_dssp CEEECCSCGGGSCH------------HHHHH-HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG
T ss_pred CEEEeCCCcccCCH------------HHHHH-HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHH
Confidence 888888874 320 12333 45677788888887777 555555566666777777777774 22221
Q ss_pred CccccCCCCCCEEEcccCCCccccChHHhhcc-cccceeecccccccccccC
Q 036216 256 PLWLYSQKDLQFLDLFNSGISGTFPNRLLKSA-SQLYLLDLGHNQIHGELTN 306 (695)
Q Consensus 256 ~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~ 306 (695)
...+..+++|++|++++| +. ...+..+ ..++.|++++|.+++..+.
T Consensus 265 ~~~l~~~~~L~~L~l~~~-i~----~~~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 265 LLELGEIPTLKTLQVFGI-VP----DGTLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp GGGGGGCTTCCEEECTTS-SC----TTCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred HHHHhcCCCCCEEeccCc-cC----HHHHHHHHhhCcceEEecccCccccCC
Confidence 224566777777777776 33 2212222 2355566677766665553
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=3.4e-21 Score=186.25 Aligned_cols=196 Identities=15% Similarity=0.143 Sum_probs=158.4
Q ss_pred ccceeecccccccCCCCccccCCCCCCEEeCCCCc-ccccCCccccCCCCCcEEECcC-CcceeeCCccccCCCCCcEEE
Q 036216 361 KLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNK-FTGNLPTSLGSLSSLVSLHLRK-NRLSGTIPILLKNCTSLVTLD 438 (695)
Q Consensus 361 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~-~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~ 438 (695)
++++|++++|.+++..+..|..+++|++|++++|. ++...+..|..+++|++|++++ |++++..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 66777777777776666678888889999999886 7766667888889999999988 888877777888899999999
Q ss_pred cCCCcccccCChhhhhcCCCCc---EEEcCCC-cccccCCccccCCCCCC-EEeCCCCcCcccCChh-hhhcccCcccCC
Q 036216 439 VGENEVFGNIPSWFGERFSRMV---LLILRSN-NFDGPLPTELCDLAFLQ-ILDLADNNLSGTIPNC-IHNLTAMATVNP 512 (695)
Q Consensus 439 l~~n~~~~~~~~~~~~~l~~L~---~L~l~~n-~~~~~~~~~l~~l~~L~-~L~L~~n~l~~~~p~~-~~~l~~L~~l~~ 512 (695)
+++|.+.+ +|. + ..+++|+ +|++++| ++.+..+..|..+++|+ +|++++|+++ .+|.. +.. ++
T Consensus 112 l~~n~l~~-lp~-~-~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~------ 180 (239)
T 2xwt_C 112 IFNTGLKM-FPD-L-TKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TK------ 180 (239)
T ss_dssp EEEECCCS-CCC-C-TTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CE------
T ss_pred CCCCCCcc-ccc-c-ccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CC------
Confidence 99998854 676 3 3678887 9999999 88877777799999999 9999999998 55542 322 33
Q ss_pred CCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCcc-ccccCCccccCC-CCCCEEeccCCccc
Q 036216 513 FTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNL-FSGTLPMGLTNL-KAVQSLNLSYNIFT 590 (695)
Q Consensus 513 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~-l~~~~p~~l~~l-~~L~~L~Ls~n~l~ 590 (695)
|+.|++++|+ +++..+..|..+ ++|++|++++|+++
T Consensus 181 ------------------------------------------L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 181 ------------------------------------------LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp ------------------------------------------EEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred ------------------------------------------CCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 4889999995 987778889999 99999999999999
Q ss_pred ccCCccccCcCCCCEEECCCCc
Q 036216 591 GRIPETIGTMRSLESIDFSVNK 612 (695)
Q Consensus 591 ~~~p~~~~~l~~L~~L~Ls~n~ 612 (695)
.+|.. .+++|+.|+++++.
T Consensus 219 -~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 219 -ALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp -CCCCT--TCTTCSEEECTTC-
T ss_pred -cCChh--HhccCceeeccCcc
Confidence 55553 68899999998874
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=2.4e-21 Score=195.18 Aligned_cols=231 Identities=18% Similarity=0.111 Sum_probs=130.5
Q ss_pred CCCEEECCCCCCCCCCCchh--hcCCCCCCEEEcCCCcCcccCCccC--CCCCCCCEEeCCCCCCCCCch----hhhcCC
Q 036216 28 TLTTLDLSHNQFDNSFVPAW--VFGLSRLHFLNLGYNNFQGPIPEGL--QNLTSLKHLGLPFNHFSSSVP----KWFDRL 99 (695)
Q Consensus 28 ~L~~L~Ls~n~i~~~~~~~~--~~~l~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~L~~n~l~~~~p----~~~~~l 99 (695)
.++.+.+.++.+....+... +..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 45667776666543211111 1234567777777777777777766 777777777777777775433 344567
Q ss_pred CCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcccccccchhcCCCCCC
Q 036216 100 THLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNL 179 (695)
Q Consensus 100 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L 179 (695)
++|++|++++|.+.+..+..++.+++|++|++++|++.+..... .+..++.+++|
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-------------------------~~~~~~~l~~L 199 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLM-------------------------AALCPHKFPAI 199 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHH-------------------------TTSCTTSSCCC
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhh-------------------------HHHhhhcCCCC
Confidence 77777777777777666677777777777777777764321100 01123456677
Q ss_pred CEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCC---CCccEEEccCCCCCCCCC
Q 036216 180 DSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPP---FQLIELGLRSCDVGSRFP 256 (695)
Q Consensus 180 ~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~ 256 (695)
++|++++|+++.. +.++...+.++++|+.|++++|.+.+..+..+..+ ++|++|++++|.+. .+|
T Consensus 200 ~~L~Ls~N~l~~l-----------~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp 267 (310)
T 4glp_A 200 QNLALRNTGMETP-----------TGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVP 267 (310)
T ss_dssp CSCBCCSSCCCCH-----------HHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCC
T ss_pred CEEECCCCCCCch-----------HHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chh
Confidence 7777777766411 01111134566777777777777665544444333 35555555555554 233
Q ss_pred ccccCCCCCCEEEcccCCCccccChHHhhcccccceeecccccc
Q 036216 257 LWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQI 300 (695)
Q Consensus 257 ~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l 300 (695)
..+. ++|++|++++|.++ .+|. +..+++|+.|++++|++
T Consensus 268 ~~~~--~~L~~L~Ls~N~l~-~~~~--~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 268 KGLP--AKLRVLDLSSNRLN-RAPQ--PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp SCCC--SCCSCEECCSCCCC-SCCC--TTSCCCCSCEECSSTTT
T ss_pred hhhc--CCCCEEECCCCcCC-CCch--hhhCCCccEEECcCCCC
Confidence 3332 44555555555554 2222 23344444444444444
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=5.2e-20 Score=173.72 Aligned_cols=160 Identities=26% Similarity=0.309 Sum_probs=76.2
Q ss_pred CCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeC
Q 036216 4 SLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGL 83 (695)
Q Consensus 4 ~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 83 (695)
+|++|++++|.++.++...|..+++|++|++++|.++.. .+..+..+++|++|++++|.+++..+..|..+++|++|++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 445555555555554444444555555555555555442 2223344555555555555554444444445555555555
Q ss_pred CCCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCc
Q 036216 84 PFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASS 163 (695)
Q Consensus 84 ~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n 163 (695)
++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+. ++.|++..|
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~------------l~~L~~~~n 175 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG------------IRYLSEWIN 175 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTTT------------THHHHHHHH
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCCC------------HHHHHHHHH
Confidence 55555444444444455555555555555443333444455555555555544333222 444444445
Q ss_pred ccccccchhcCCC
Q 036216 164 SISGHLTDQLGQF 176 (695)
Q Consensus 164 ~~~~~~~~~l~~l 176 (695)
.+++.+|..++.+
T Consensus 176 ~~~g~ip~~~~~l 188 (208)
T 2o6s_A 176 KHSGVVRNSAGSV 188 (208)
T ss_dssp HCTTTBBCTTSSB
T ss_pred hCCceeeccCccc
Confidence 5554444444433
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=1.1e-19 Score=186.06 Aligned_cols=239 Identities=15% Similarity=0.074 Sum_probs=168.2
Q ss_pred cEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccC-CccCCCCCCCCE-EeC
Q 036216 6 VELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPI-PEGLQNLTSLKH-LGL 83 (695)
Q Consensus 6 ~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~-L~L 83 (695)
++++.++++++.+|... .+++++|+|++|+|+.+ .+++|.++++|++|+|++|++.+.+ +.+|.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt~iP~~l---~~~l~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL---PRNAIELRFVLTKLRVI-QKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCCSCCTTC---CTTCSEEEEESCCCSEE-CTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCCccCcCc---CCCCCEEEccCCcCCCc-CHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 67888999999998743 36899999999999873 3356889999999999999986544 467889988775 666
Q ss_pred CCCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccC-CcCccccchhhhhhhcccccccceEEccC
Q 036216 84 PFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGG-AKLNQEISEILEIFSGCVSNGLESLALAS 162 (695)
Q Consensus 84 ~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~~~~~~L~~L~L~~ 162 (695)
++|+++...|..|..+++|++|++++|.+....+..+....++..+++.+ +.+....+. .+......++.|++++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~----~f~~~~~~l~~L~L~~ 163 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN----SFVGLSFESVILWLNK 163 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTT----SSTTSBSSCEEEECCS
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccccccc----chhhcchhhhhhcccc
Confidence 77889877788899999999999999999876666777777888888865 455544333 3333444478888888
Q ss_pred cccccccchhcCCCCCCCEEEccC-CCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCc
Q 036216 163 SSISGHLTDQLGQFKNLDSLDLSN-NSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQL 241 (695)
Q Consensus 163 n~~~~~~~~~l~~l~~L~~L~L~~-n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L 241 (695)
|.++.+.+..+ ...+|++|++++ |.++ .++...|.++++|+.|++++|+++......+ .+|
T Consensus 164 N~i~~i~~~~f-~~~~L~~l~l~~~n~l~--------------~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L 225 (350)
T 4ay9_X 164 NGIQEIHNSAF-NGTQLDELNLSDNNNLE--------------ELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENL 225 (350)
T ss_dssp SCCCEECTTSS-TTEEEEEEECTTCTTCC--------------CCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTC
T ss_pred ccccCCChhhc-cccchhHHhhccCCccc--------------CCCHHHhccCcccchhhcCCCCcCccChhhh---ccc
Confidence 88877555444 456788888864 5554 6777778888888888888887775444333 334
Q ss_pred cEEEccCCCCCCCCCccccCCCCCCEEEcc
Q 036216 242 IELGLRSCDVGSRFPLWLYSQKDLQFLDLF 271 (695)
Q Consensus 242 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 271 (695)
+.|.+.++.....+| .+..+++|+.+++.
T Consensus 226 ~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 226 KKLRARSTYNLKKLP-TLEKLVALMEASLT 254 (350)
T ss_dssp CEEECTTCTTCCCCC-CTTTCCSCCEEECS
T ss_pred hHhhhccCCCcCcCC-CchhCcChhhCcCC
Confidence 444444433333333 24444555555443
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=3.1e-19 Score=168.40 Aligned_cols=179 Identities=23% Similarity=0.182 Sum_probs=129.1
Q ss_pred cEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCC
Q 036216 6 VELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPF 85 (695)
Q Consensus 6 ~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 85 (695)
+.++++++.++.+|... .++|++|++++|.++.. .+..+..+++|++|++++|+++...+..|..+++|++|++++
T Consensus 10 ~~v~c~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI---PAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCccCCCCCC---CCCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 56788888888887532 35788888888888864 455567888888888888888866666778888888888888
Q ss_pred CCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCccc
Q 036216 86 NHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSI 165 (695)
Q Consensus 86 n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~ 165 (695)
|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|++++.
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-------------------------- 139 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV-------------------------- 139 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC--------------------------
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCcccee--------------------------
Confidence 888866666678888888888888888866666677777777777777766532
Q ss_pred ccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCC
Q 036216 166 SGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPP 238 (695)
Q Consensus 166 ~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 238 (695)
.+..+..+++|++|++++|.+. ..++.|+.+++..|.+++.++..++.+
T Consensus 140 ---~~~~~~~l~~L~~L~l~~N~~~---------------------~~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 140 ---PDGVFDRLTSLQYIWLHDNPWD---------------------CTCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp ---CTTTTTTCTTCCEEECCSCCBC---------------------CCTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred ---CHHHhccCCCccEEEecCCCee---------------------cCCCCHHHHHHHHHhCCceeeccCccc
Confidence 2334666777778888777653 334556666666666665555554433
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=1.8e-19 Score=193.72 Aligned_cols=79 Identities=23% Similarity=0.378 Sum_probs=44.7
Q ss_pred cEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCC-------CEEECCCCcccccCCcCCcCCCCCC
Q 036216 556 RIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSL-------ESIDFSVNKFTGEIPQSMSSLTFLN 628 (695)
Q Consensus 556 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L-------~~L~Ls~n~l~~~~p~~l~~l~~L~ 628 (695)
+.|++++|++++ +|. |. ++|+.|+|++|.|+ .+|. |.. +| +.|+|++|+++ .+|..+..+++|+
T Consensus 163 ~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~ 233 (571)
T 3cvr_A 163 EVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTC 233 (571)
T ss_dssp CEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTE
T ss_pred CEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCC
Confidence 455555555553 444 43 56666666666665 4444 433 44 66666666666 4566555566666
Q ss_pred EEEcccCcCcccCCC
Q 036216 629 HLNLSNNYLTGKIPS 643 (695)
Q Consensus 629 ~L~ls~N~l~~~iP~ 643 (695)
+|++++|++++.+|.
T Consensus 234 ~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 234 TIILEDNPLSSRIRE 248 (571)
T ss_dssp EEECCSSSCCHHHHH
T ss_pred EEEeeCCcCCCcCHH
Confidence 666666666665554
No 99
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=172.19 Aligned_cols=157 Identities=18% Similarity=0.199 Sum_probs=124.4
Q ss_pred cEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCC-ccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCC
Q 036216 435 VTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLP-TELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPF 513 (695)
Q Consensus 435 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~ 513 (695)
+.+++++|.+ +.+|..+ .+.++.|++++|++++..+ ..|..+++|++|++++|++++..+..|.++++|
T Consensus 14 ~~l~~s~n~l-~~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L------ 83 (220)
T 2v70_A 14 TTVDCSNQKL-NKIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV------ 83 (220)
T ss_dssp TEEECCSSCC-SSCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC------
T ss_pred CEeEeCCCCc-ccCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC------
Confidence 3566666665 4455533 3345677777777776543 446778888888888888886666667666655
Q ss_pred CCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccC
Q 036216 514 TGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRI 593 (695)
Q Consensus 514 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 593 (695)
++|+|++|++++..+..|..+++|++|+|++|++++..
T Consensus 84 ------------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 121 (220)
T 2v70_A 84 ------------------------------------------NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVG 121 (220)
T ss_dssp ------------------------------------------CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBC
T ss_pred ------------------------------------------CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeEC
Confidence 77888888888777778899999999999999999888
Q ss_pred CccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccCcCcccCCC
Q 036216 594 PETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPS 643 (695)
Q Consensus 594 p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~iP~ 643 (695)
|..|+.+++|+.|+|++|++++..|..|..+++|++|++++|++.+..+-
T Consensus 122 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 122 NDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp TTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred HhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence 99999999999999999999988899999999999999999999876653
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=2.4e-19 Score=192.77 Aligned_cols=188 Identities=28% Similarity=0.370 Sum_probs=130.1
Q ss_pred ccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcC
Q 036216 361 KLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVG 440 (695)
Q Consensus 361 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 440 (695)
+++.|++++|.+++ +|..+ .++|++|++++|.++ .+| ..+++|++|++++|++++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 67777777777764 55444 267777777777777 455 345777777887777775 555 444 77788888
Q ss_pred CCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccc
Q 036216 441 ENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEY 520 (695)
Q Consensus 441 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~ 520 (695)
+|.+.+ +|. .+++|+.|++++|.+++ +|. .+++|++|++++|++++ +|. +. ++
T Consensus 129 ~N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~-------------- 181 (571)
T 3cvr_A 129 NNQLTM-LPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ES-------------- 181 (571)
T ss_dssp SSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TT--------------
T ss_pred CCcCCC-CCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CC--------------
Confidence 777744 665 36777888888887775 454 46778888888887774 544 32 22
Q ss_pred cCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCC-------CEEeccCCcccccC
Q 036216 521 SFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAV-------QSLNLSYNIFTGRI 593 (695)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L-------~~L~Ls~n~l~~~~ 593 (695)
|+.|+|++|+|+ .+|. +.. +| +.|+|++|.++ .+
T Consensus 182 ----------------------------------L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~l 222 (571)
T 3cvr_A 182 ----------------------------------LEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HI 222 (571)
T ss_dssp ----------------------------------CCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CC
T ss_pred ----------------------------------CCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ec
Confidence 367778888777 5555 544 66 88888888888 67
Q ss_pred CccccCcCCCCEEECCCCcccccCCcCCcCCC
Q 036216 594 PETIGTMRSLESIDFSVNKFTGEIPQSMSSLT 625 (695)
Q Consensus 594 p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 625 (695)
|..+..+++|+.|+|++|.+++.+|..+..++
T Consensus 223 p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 223 PENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred CHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 77777788888888888888887777766543
No 101
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=4.2e-19 Score=181.80 Aligned_cols=244 Identities=16% Similarity=0.121 Sum_probs=180.9
Q ss_pred CcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccC-CccccCCCCCcE
Q 036216 334 LTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNL-PTSLGSLSSLVS 412 (695)
Q Consensus 334 L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~-~~~~~~l~~L~~ 412 (695)
-++++.++++++. +|..+ .+++++|++++|+++...+.+|.++++|++|++++|++.+.+ +.+|.+++++++
T Consensus 11 ~~~v~C~~~~Lt~-iP~~l------~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~ 83 (350)
T 4ay9_X 11 NRVFLCQESKVTE-IPSDL------PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE 83 (350)
T ss_dssp TTEEEEESTTCCS-CCTTC------CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCE
T ss_pred CCEEEecCCCCCc-cCcCc------CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhh
Confidence 3678888888874 44332 247899999999999666678999999999999999986544 457888888775
Q ss_pred -EECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCC-CcccccCCccccCCC-CCCEEeCC
Q 036216 413 -LHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRS-NNFDGPLPTELCDLA-FLQILDLA 489 (695)
Q Consensus 413 -L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~l~~l~-~L~~L~L~ 489 (695)
+.+..|++....|..|..+++|++|++++|.+.. +|...+....++..+++.+ +++....+..|..+. .++.|+++
T Consensus 84 ~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~ 162 (350)
T 4ay9_X 84 IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH-LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN 162 (350)
T ss_dssp EEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSS-CCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECC
T ss_pred hhcccCCcccccCchhhhhcccccccccccccccc-CCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccc
Confidence 5667788998888999999999999999999854 4443333566788888865 566655555666664 68899999
Q ss_pred CCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCC-cccccc
Q 036216 490 DNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSK-NLFSGT 568 (695)
Q Consensus 490 ~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~-n~l~~~ 568 (695)
+|+|+. +|.......+ ++.+++++ |.++..
T Consensus 163 ~N~i~~-i~~~~f~~~~------------------------------------------------L~~l~l~~~n~l~~i 193 (350)
T 4ay9_X 163 KNGIQE-IHNSAFNGTQ------------------------------------------------LDELNLSDNNNLEEL 193 (350)
T ss_dssp SSCCCE-ECTTSSTTEE------------------------------------------------EEEEECTTCTTCCCC
T ss_pred cccccC-CChhhccccc------------------------------------------------hhHHhhccCCcccCC
Confidence 999984 4433222222 37788875 566644
Q ss_pred CCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccCcCc
Q 036216 569 LPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLT 638 (695)
Q Consensus 569 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~ 638 (695)
.+..|..+++|++|+|++|+++ .+|. +.+..|+.|.+.++.-...+| .+.++++|+.++++++.-.
T Consensus 194 ~~~~f~~l~~L~~LdLs~N~l~-~lp~--~~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~~c 259 (350)
T 4ay9_X 194 PNDVFHGASGPVILDISRTRIH-SLPS--YGLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPSHC 259 (350)
T ss_dssp CTTTTTTEECCSEEECTTSCCC-CCCS--SSCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHHHH
T ss_pred CHHHhccCcccchhhcCCCCcC-ccCh--hhhccchHhhhccCCCcCcCC-CchhCcChhhCcCCCCccc
Confidence 4457899999999999999999 5554 335677777776665555777 4889999999999876543
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=1.8e-18 Score=164.18 Aligned_cols=154 Identities=17% Similarity=0.203 Sum_probs=124.1
Q ss_pred cEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCC
Q 036216 435 VTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFT 514 (695)
Q Consensus 435 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~ 514 (695)
+.++++++.+ ..+|..+ .++++.|++++|++.+..+..|..+++|++|++++|++++..|..|.++++|
T Consensus 14 ~~v~c~~~~l-~~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L------- 82 (220)
T 2v9t_B 14 NIVDCRGKGL-TEIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL------- 82 (220)
T ss_dssp TEEECTTSCC-SSCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSC-------
T ss_pred CEEEcCCCCc-CcCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC-------
Confidence 4566666665 4555543 3567777888887776666678888888888888888887777777777665
Q ss_pred CCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCC
Q 036216 515 GNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIP 594 (695)
Q Consensus 515 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p 594 (695)
++|+|++|++++..+..|..+++|++|+|++|++++..|
T Consensus 83 -----------------------------------------~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~ 121 (220)
T 2v9t_B 83 -----------------------------------------NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRV 121 (220)
T ss_dssp -----------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred -----------------------------------------CEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCH
Confidence 788888888886666667889999999999999998888
Q ss_pred ccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccCcCccc
Q 036216 595 ETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGK 640 (695)
Q Consensus 595 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ 640 (695)
..|+.+++|+.|+|++|++++..+..|..+++|++|++++|++...
T Consensus 122 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 122 DAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred HHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 8999999999999999999987777899999999999999998753
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=4.8e-18 Score=168.77 Aligned_cols=185 Identities=24% Similarity=0.303 Sum_probs=132.5
Q ss_pred EcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCC
Q 036216 9 DLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHF 88 (695)
Q Consensus 9 ~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 88 (695)
.+..+.++.+. .+..+++|++|++++|.+.. ++ .+..+++|++|++++|++++..+ +..+++|++|++++|.+
T Consensus 30 ~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~--~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l 102 (291)
T 1h6t_A 30 NLKKKSVTDAV--TQNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV 102 (291)
T ss_dssp HTTCSCTTSEE--CHHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred HhcCCCccccc--chhhcCcccEEEccCCCccc--Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC
Confidence 34444444433 24567778888888888776 44 36678888888888888875443 77888888888888888
Q ss_pred CCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcccccc
Q 036216 89 SSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGH 168 (695)
Q Consensus 89 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~ 168 (695)
++ +| .+..+++|++|++++|.+++. ..+..+++|++|++++|++.+. . .++.+.. |++|++++|.+.+.
T Consensus 103 ~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~----~l~~l~~-L~~L~L~~N~l~~~ 171 (291)
T 1h6t_A 103 KD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--T----VLSRLTK-LDTLSLEDNQISDI 171 (291)
T ss_dssp CC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--G----GGGGCTT-CSEEECCSSCCCCC
T ss_pred CC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--h----hhccCCC-CCEEEccCCccccc
Confidence 74 33 477888888888888887753 4677788888888888877664 1 3445555 77788877777775
Q ss_pred cchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEccccccee
Q 036216 169 LTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTL 229 (695)
Q Consensus 169 ~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~ 229 (695)
.+ +..+++|++|++++|.++ .++ .+..+++|+.|++++|++..
T Consensus 172 ~~--l~~l~~L~~L~L~~N~i~--------------~l~--~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 172 VP--LAGLTKLQNLYLSKNHIS--------------DLR--ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp GG--GTTCTTCCEEECCSSCCC--------------BCG--GGTTCTTCSEEEEEEEEEEC
T ss_pred hh--hcCCCccCEEECCCCcCC--------------CCh--hhccCCCCCEEECcCCcccC
Confidence 54 778888888888888875 343 36778888888888887764
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=3.9e-18 Score=163.03 Aligned_cols=158 Identities=19% Similarity=0.228 Sum_probs=130.9
Q ss_pred CcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCC
Q 036216 434 LVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPF 513 (695)
Q Consensus 434 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~ 513 (695)
-+.++.+++.+ +.+|..+ .++|++|++++|.+++..|..|..+++|++|++++|++++..+..|..+++|
T Consensus 21 ~~~v~c~~~~l-~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L------ 90 (229)
T 3e6j_A 21 GTTVDCRSKRH-ASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL------ 90 (229)
T ss_dssp TTEEECTTSCC-SSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC------
T ss_pred CCEeEccCCCc-CccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCc------
Confidence 45667766666 5666543 4778888888888888778888888999999999998875444556666555
Q ss_pred CCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccC
Q 036216 514 TGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRI 593 (695)
Q Consensus 514 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 593 (695)
+.|+|++|++++..+..|..+++|++|+|++|+++ .+
T Consensus 91 ------------------------------------------~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~l 127 (229)
T 3e6j_A 91 ------------------------------------------TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-EL 127 (229)
T ss_dssp ------------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SC
T ss_pred ------------------------------------------CEEECCCCcCCccChhHhCcchhhCeEeccCCccc-cc
Confidence 78889999998777777899999999999999999 88
Q ss_pred CccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccCcCcccCCCC
Q 036216 594 PETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSS 644 (695)
Q Consensus 594 p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~iP~~ 644 (695)
|..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++.+..+..
T Consensus 128 p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 178 (229)
T 3e6j_A 128 PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDI 178 (229)
T ss_dssp CTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGGG
T ss_pred CcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcchh
Confidence 899999999999999999999777778999999999999999999876643
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=5.1e-18 Score=168.57 Aligned_cols=169 Identities=25% Similarity=0.356 Sum_probs=149.0
Q ss_pred CCCCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEE
Q 036216 2 LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHL 81 (695)
Q Consensus 2 l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 81 (695)
+++|++|++++|.++.++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+++. ..+..+++|++|
T Consensus 45 l~~L~~L~l~~~~i~~~~--~~~~l~~L~~L~L~~n~l~~--~~~-l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L 117 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTD--IKP-LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSL 117 (291)
T ss_dssp HHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEE
T ss_pred cCcccEEEccCCCcccCh--hHhcCCCCCEEEccCCccCC--Ccc-cccCCCCCEEECCCCcCCCC--hhhccCCCCCEE
Confidence 468999999999999986 48899999999999999998 555 88999999999999999853 359999999999
Q ss_pred eCCCCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEcc
Q 036216 82 GLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALA 161 (695)
Q Consensus 82 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~ 161 (695)
++++|.+++. ..+..+++|++|++++|.+++. ..+..+++|++|++++|++.+..+ +..+.. |+.|+++
T Consensus 118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~------l~~l~~-L~~L~L~ 186 (291)
T 1h6t_A 118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP------LAGLTK-LQNLYLS 186 (291)
T ss_dssp ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG------GTTCTT-CCEEECC
T ss_pred ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh------hcCCCc-cCEEECC
Confidence 9999999964 4689999999999999999965 689999999999999999987643 445555 9999999
Q ss_pred CcccccccchhcCCCCCCCEEEccCCCcC
Q 036216 162 SSSISGHLTDQLGQFKNLDSLDLSNNSIV 190 (695)
Q Consensus 162 ~n~~~~~~~~~l~~l~~L~~L~L~~n~i~ 190 (695)
+|.+++. + .+..+++|+.|++++|+++
T Consensus 187 ~N~i~~l-~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 187 KNHISDL-R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp SSCCCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred CCcCCCC-h-hhccCCCCCEEECcCCccc
Confidence 9999885 3 4899999999999999886
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=2.4e-18 Score=176.88 Aligned_cols=180 Identities=27% Similarity=0.282 Sum_probs=124.4
Q ss_pred cEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhc-CCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCC
Q 036216 6 VELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLP 84 (695)
Q Consensus 6 ~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 84 (695)
++++++++.++.+|... .+.+++|+|++|.|+.. .+..+. ++++|++|+|++|+++...+..|.++++|++|+|+
T Consensus 21 ~~l~c~~~~l~~iP~~~---~~~l~~L~Ls~N~l~~l-~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL---PSYTALLDLSHNNLSRL-RAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSSCCSSC---CTTCSEEECCSSCCCEE-CTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCccCccC---CCCCCEEECCCCCCCcc-ChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 56788888888887632 24578888888888774 444455 78888888888888887777778888888888888
Q ss_pred CCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcc
Q 036216 85 FNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSS 164 (695)
Q Consensus 85 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~ 164 (695)
+|++++..+..|..+++|++|+|++|.+.+..+..|..+++|++|++++|++....+.. +.
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~----~~--------------- 157 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVEL----IK--------------- 157 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGG----TC---------------
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHH----hc---------------
Confidence 88888766667888888888888888888777778888888888888888776543331 10
Q ss_pred cccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCC--CCEEEccccccee
Q 036216 165 ISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTK--LSVFLVGANKLTL 229 (695)
Q Consensus 165 ~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~--L~~L~l~~n~l~~ 229 (695)
.+..+++|+.|+|++|+|+ .++...+..++. ++.|++++|.+..
T Consensus 158 -------~~~~l~~L~~L~L~~N~l~--------------~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 158 -------DGNKLPKLMLLDLSSNKLK--------------KLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp -----------CTTCCEEECCSSCCC--------------CCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred -------CcccCCcCCEEECCCCCCC--------------ccCHHHhhhccHhhcceEEecCCCccC
Confidence 0134556666666666654 445445555554 2556666666553
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=1.2e-17 Score=158.54 Aligned_cols=154 Identities=20% Similarity=0.226 Sum_probs=116.8
Q ss_pred cEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCC
Q 036216 6 VELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPF 85 (695)
Q Consensus 6 ~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 85 (695)
++++++++.++.+|... ...+++|++++|.++....+..+..+++|++|+|++|.+++..+..|.++++|++|++++
T Consensus 14 ~~l~~s~n~l~~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 57888888888887632 245678888888887642224467888888888888888877777888888888888888
Q ss_pred CCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCccc
Q 036216 86 NHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSI 165 (695)
Q Consensus 86 n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~ 165 (695)
|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|++++.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-------------------------- 144 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV-------------------------- 144 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCB--------------------------
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEE--------------------------
Confidence 888877777788888888888888888877777777777777777777776543
Q ss_pred ccccchhcCCCCCCCEEEccCCCcCC
Q 036216 166 SGHLTDQLGQFKNLDSLDLSNNSIVG 191 (695)
Q Consensus 166 ~~~~~~~l~~l~~L~~L~L~~n~i~~ 191 (695)
.|..|..+++|++|++++|.+..
T Consensus 145 ---~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 145 ---APGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp ---CTTTTTTCTTCCEEECCSCCEEC
T ss_pred ---CHHHhcCCCCCCEEEecCcCCcC
Confidence 45567778888888888888753
No 108
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=4.6e-18 Score=158.55 Aligned_cols=153 Identities=16% Similarity=0.163 Sum_probs=85.0
Q ss_pred CCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCCCCCchhhhcCCCCCC
Q 036216 24 ANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLE 103 (695)
Q Consensus 24 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 103 (695)
..+++|++|++++|.++. +| .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..|..|+.+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTD--LT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCSC--CT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhcCCccEEeccCCCccC--hH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 344555556665555554 34 3555555666666555443 123455555666666666555544455555555666
Q ss_pred EEEcccCcCCcccchhhcCCCCCCEEEccCCc-CccccchhhhhhhcccccccceEEccCcccccccchhcCCCCCCCEE
Q 036216 104 HLSLSYNSLEGRIPRSMARLCNLRRLYLGGAK-LNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSL 182 (695)
Q Consensus 104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L 182 (695)
+|++++|.+++..+..++.+++|++|++++|+ +.. ++ .+..++. |+.|++++|.+++.. .+..+++|++|
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-----~l~~l~~-L~~L~l~~n~i~~~~--~l~~l~~L~~L 186 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-----PLKTLPE-LKSLNIQFDGVHDYR--GIEDFPKLNQL 186 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-----GGGGCSS-CCEEECTTBCCCCCT--TGGGCSSCCEE
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-----hhcCCCC-CCEEECCCCCCcChH--HhccCCCCCEE
Confidence 66666665555455555555666666666555 322 22 2233333 666666666655532 57788888999
Q ss_pred EccCCCcC
Q 036216 183 DLSNNSIV 190 (695)
Q Consensus 183 ~L~~n~i~ 190 (695)
++++|+|.
T Consensus 187 ~l~~N~i~ 194 (197)
T 4ezg_A 187 YAFSQTIG 194 (197)
T ss_dssp EECBC---
T ss_pred EeeCcccC
Confidence 98888874
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=1e-17 Score=158.83 Aligned_cols=152 Identities=22% Similarity=0.262 Sum_probs=96.8
Q ss_pred cEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCC
Q 036216 6 VELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPF 85 (695)
Q Consensus 6 ~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 85 (695)
+.++++++.++.+|... .+++++|++++|.|+.+ .+..|..+++|++|+|++|.+++..|..|.++++|++|+|++
T Consensus 14 ~~v~c~~~~l~~iP~~l---~~~l~~L~l~~n~i~~i-~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL---PETITEIRLEQNTIKVI-PPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCSSCCSSC---CTTCCEEECCSSCCCEE-CTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcCcCCCcc---CcCCCEEECCCCcCCCc-CHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 45666666676666522 15667777777776653 344566666777777777776666666666667777777777
Q ss_pred CCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCccc
Q 036216 86 NHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSI 165 (695)
Q Consensus 86 n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~ 165 (695)
|.++...+..|..+++|++|++++|.+++..|..|..+++|++|++++|++++
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--------------------------- 142 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT--------------------------- 142 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC---------------------------
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCE---------------------------
Confidence 76665555556666666666666666666656666666666666666665543
Q ss_pred ccccchhcCCCCCCCEEEccCCCcC
Q 036216 166 SGHLTDQLGQFKNLDSLDLSNNSIV 190 (695)
Q Consensus 166 ~~~~~~~l~~l~~L~~L~L~~n~i~ 190 (695)
..+..|..+++|++|++++|.+.
T Consensus 143 --~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 143 --IAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp --CCTTTTTTCTTCCEEECCSSCEE
T ss_pred --ECHHHHhCCCCCCEEEeCCCCcC
Confidence 23344666677777777777664
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=4.4e-18 Score=185.26 Aligned_cols=127 Identities=25% Similarity=0.311 Sum_probs=71.6
Q ss_pred hccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEE
Q 036216 358 ETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTL 437 (695)
Q Consensus 358 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 437 (695)
.++.|+.|++++|.+... + .+..+++|+.|+|++|.+.+..+ +..+++|+.|+|++|.+.+ ++ .+..+++|+.|
T Consensus 41 ~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSL 114 (605)
T ss_dssp HHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEE
T ss_pred cCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEE
Confidence 355666666666666532 2 35566666666666666664332 5566666666666666653 22 45556666666
Q ss_pred EcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcc
Q 036216 438 DVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSG 495 (695)
Q Consensus 438 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~ 495 (695)
++++|.+.+ ++. +. .+++|+.|++++|++++. ..++.+++|+.|+|++|++++
T Consensus 115 ~Ls~N~l~~-l~~-l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 115 SLEHNGISD-ING-LV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD 167 (605)
T ss_dssp ECTTSCCCC-CGG-GG-GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC
T ss_pred EecCCCCCC-Ccc-cc-CCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC
Confidence 666666532 322 22 455666666666655543 345555566666666665553
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=3.7e-18 Score=185.88 Aligned_cols=190 Identities=24% Similarity=0.290 Sum_probs=135.2
Q ss_pred EEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCC
Q 036216 7 ELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFN 86 (695)
Q Consensus 7 ~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 86 (695)
.+.+..+.+..+.. +..+++|+.|++++|.+.. ++ .+..+++|++|+|++|.+.+..+ +..+++|++|+|++|
T Consensus 25 ~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 97 (605)
T 1m9s_A 25 KDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN 97 (605)
T ss_dssp HHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC--CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred HHhccCCCcccccc--hhcCCCCCEEECcCCCCCC--Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC
Confidence 34455555555443 4567778888888888776 44 46778888888888888775444 777888888888888
Q ss_pred CCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcccc
Q 036216 87 HFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSIS 166 (695)
Q Consensus 87 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~ 166 (695)
.+.+ +| .+..+++|++|+|++|.+.+. ..+..+++|+.|+|++|++.+. . .+..+.. |+.|+|++|.+.
T Consensus 98 ~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~----~l~~l~~-L~~L~Ls~N~l~ 166 (605)
T 1m9s_A 98 KIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--T----VLSRLTK-LDTLSLEDNQIS 166 (605)
T ss_dssp CCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--G----GGGSCTT-CSEEECCSSCCC
T ss_pred CCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--h----hhcccCC-CCEEECcCCcCC
Confidence 7774 33 577788888888888887742 4577788888888888877664 1 3445555 788888888777
Q ss_pred cccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecC
Q 036216 167 GHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVK 232 (695)
Q Consensus 167 ~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~ 232 (695)
+..| +..+++|+.|+|++|.|. .++ .+..+++|+.|++++|.+.....
T Consensus 167 ~~~~--l~~l~~L~~L~Ls~N~i~--------------~l~--~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 167 DIVP--LAGLTKLQNLYLSKNHIS--------------DLR--ALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCC--------------BCG--GGTTCTTCSEEECCSEEEECCCC
T ss_pred Cchh--hccCCCCCEEECcCCCCC--------------CCh--HHccCCCCCEEEccCCcCcCCcc
Confidence 7655 788888888888888875 332 47778888888888888765433
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.74 E-value=1.4e-17 Score=171.28 Aligned_cols=177 Identities=25% Similarity=0.192 Sum_probs=139.6
Q ss_pred CEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCC-CCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEEcc
Q 036216 30 TTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQ-NLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLS 108 (695)
Q Consensus 30 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 108 (695)
++++++++.++. +|..+. ..+++|+|++|++++..+..|. ++++|++|+|++|.+++..+..|..+++|++|+|+
T Consensus 21 ~~l~c~~~~l~~--iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPN--VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSS--CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCc--cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 678888888877 676543 4588888888888877777777 88888888888888887777778888888888888
Q ss_pred cCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcccccccchhcCCCCCCCEEEccCCC
Q 036216 109 YNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNNS 188 (695)
Q Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~ 188 (695)
+|.++...+..|..+++|++|++++|++.. ..+..|..+++|++|+|++|+
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-----------------------------~~~~~~~~l~~L~~L~L~~N~ 147 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVV-----------------------------VDRNAFEDMAQLQKLYLSQNQ 147 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCE-----------------------------ECTTTTTTCTTCCEEECCSSC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccE-----------------------------ECHHHhCCcccCCEEECCCCc
Confidence 888887666677888888888877777653 345568889999999999999
Q ss_pred cCCCceEEeeccccccccChhhh---hCCCCCCEEEcccccceeecCCCCCCCCC--ccEEEccCCCCCC
Q 036216 189 IVGPRVLQLYLNKLHGTLSEIHF---ANLTKLSVFLVGANKLTLKVKRDWIPPFQ--LIELGLRSCDVGS 253 (695)
Q Consensus 189 i~~~~~~~l~~~~~~~~l~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~~~~--L~~L~l~~~~~~~ 253 (695)
++ .++...| ..+++|+.|++++|.++......+..++. ++.|++++|++..
T Consensus 148 l~--------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 148 IS--------------RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CC--------------SCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CC--------------eeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 87 5666566 67999999999999999766666666665 4889999998753
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=4.8e-17 Score=155.43 Aligned_cols=152 Identities=26% Similarity=0.269 Sum_probs=111.8
Q ss_pred CcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCC
Q 036216 5 LVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLP 84 (695)
Q Consensus 5 L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 84 (695)
-+.++++++.++.+|... .++|++|+|++|.+++. .|..+..+++|++|+|++|++....+..|..+++|++|+++
T Consensus 21 ~~~v~c~~~~l~~ip~~~---~~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGI---PTNAQILYLHDNQITKL-EPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcCccCCCC---CCCCCEEEcCCCccCcc-CHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 356777777777777632 26778888888888775 56677777888888888888776666667778888888888
Q ss_pred CCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcc
Q 036216 85 FNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSS 164 (695)
Q Consensus 85 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~ 164 (695)
+|.+++..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|++.+
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~-------------------------- 149 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKS-------------------------- 149 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCC--------------------------
T ss_pred CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCc--------------------------
Confidence 88877666666777788888888888777 567777777777777777776653
Q ss_pred cccccchhcCCCCCCCEEEccCCCcC
Q 036216 165 ISGHLTDQLGQFKNLDSLDLSNNSIV 190 (695)
Q Consensus 165 ~~~~~~~~l~~l~~L~~L~L~~n~i~ 190 (695)
..+..+..+++|+.|++++|.+.
T Consensus 150 ---~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 150 ---IPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp ---CCTTTTTTCTTCCEEECTTSCBC
T ss_pred ---cCHHHHhCCCCCCEEEeeCCCcc
Confidence 23345677888888888888875
No 114
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=2.5e-17 Score=152.64 Aligned_cols=154 Identities=19% Similarity=0.275 Sum_probs=110.8
Q ss_pred cEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCCh-hhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceE
Q 036216 460 VLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPN-CIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQEL 538 (695)
Q Consensus 460 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 538 (695)
+.+++++|.++ .+|..+. .+|++|++++|++++..+. .|..+++|
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L------------------------------- 56 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHL------------------------------- 56 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTC-------------------------------
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCC-------------------------------
Confidence 45566666664 4454443 2677777777777744443 35555544
Q ss_pred EEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCC
Q 036216 539 VVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIP 618 (695)
Q Consensus 539 ~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p 618 (695)
++|+|++|++++..|..|..+++|++|+|++|++++..|..|+.+++|+.|+|++|++++..|
T Consensus 57 -----------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 119 (192)
T 1w8a_A 57 -----------------VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP 119 (192)
T ss_dssp -----------------CEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECT
T ss_pred -----------------CEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCH
Confidence 777888888887778888889999999999999998888888899999999999999998889
Q ss_pred cCCcCCCCCCEEEcccCcCcccCCCCcccCccccccccCC-cccCCC
Q 036216 619 QSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSFNASCFLGN-NLCGAP 664 (695)
Q Consensus 619 ~~l~~l~~L~~L~ls~N~l~~~iP~~~~~~~~~~~~~~~n-~l~~~~ 664 (695)
..+..+++|++|++++|++.+..|.......+....+.++ ..|+.|
T Consensus 120 ~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 120 GSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp TSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred HHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence 9999999999999999999887764322222233334444 445544
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=1.1e-17 Score=155.94 Aligned_cols=80 Identities=23% Similarity=0.368 Sum_probs=53.3
Q ss_pred cEEEcCCccccccCCccccCCCCCCEEeccCCc-ccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEccc
Q 036216 556 RIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNI-FTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSN 634 (695)
Q Consensus 556 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~ 634 (695)
++|++++|++++..|..+..+++|++|++++|+ ++ .+| .++.+++|+.|++++|++++ ++ .+..+++|++|++++
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFS 190 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECB
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeC
Confidence 555566666655556666777777777777776 44 555 57777788888888887774 34 677777888888888
Q ss_pred CcCcc
Q 036216 635 NYLTG 639 (695)
Q Consensus 635 N~l~~ 639 (695)
|++.+
T Consensus 191 N~i~~ 195 (197)
T 4ezg_A 191 QTIGG 195 (197)
T ss_dssp C----
T ss_pred cccCC
Confidence 87654
No 116
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.73 E-value=8.3e-18 Score=170.65 Aligned_cols=284 Identities=12% Similarity=0.067 Sum_probs=175.3
Q ss_pred cccceeecccccccccccCccc-cCccceEecccccce--eecCCCCCCCcEEEccCCcCCCccchhhhhhhhh------
Q 036216 288 SQLYLLDLGHNQIHGELTNLTK-ASQLSYLSLIANNFS--GSLPLISSNLTVLELSGNSLSGPIFHFLCYTINE------ 358 (695)
Q Consensus 288 ~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~------ 358 (695)
.+++.|.++++--...+..+.. +++|+.|++++|++. ......++.+..+.+..+.+.. .+|.+
T Consensus 25 ~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~-------~aF~~~~~~~~ 97 (329)
T 3sb4_A 25 NSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPA-------YAFSNVVNGVT 97 (329)
T ss_dssp HHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECT-------TTTEEEETTEE
T ss_pred CceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCH-------HHhcccccccc
Confidence 4556666654321112222222 456666666666665 3333333334445554443321 33445
Q ss_pred --ccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcc----eeeCCccccCCC
Q 036216 359 --TMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRL----SGTIPILLKNCT 432 (695)
Q Consensus 359 --~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l----~~~~~~~~~~l~ 432 (695)
+++|+.+.+.+ .++...+.+|.+|++|+++++++|.+....+.+|..+.++..+....... .......|.++.
T Consensus 98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 77888888887 67666667788888888888888887767777787777777776665332 122334566677
Q ss_pred CCc-EEEcCCCcccccCChhhhh---cCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCc
Q 036216 433 SLV-TLDVGENEVFGNIPSWFGE---RFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMA 508 (695)
Q Consensus 433 ~L~-~L~l~~n~~~~~~~~~~~~---~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 508 (695)
.|+ .+.+... +.++..++. ...++..+.+.++-...........+++|+.+++++|+++...+.+|.++++|
T Consensus 177 ~L~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L- 252 (329)
T 3sb4_A 177 PLETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL- 252 (329)
T ss_dssp CCEEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC-
T ss_pred ccceeEEecCC---CcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC-
Confidence 776 4555432 223333322 13445555554432111111111236788888888888875555567776666
Q ss_pred ccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCC-EEeccCC
Q 036216 509 TVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQ-SLNLSYN 587 (695)
Q Consensus 509 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~-~L~Ls~n 587 (695)
+.+++++| ++.+.+..|.++++|+ .+++.+
T Consensus 253 -----------------------------------------------~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~- 283 (329)
T 3sb4_A 253 -----------------------------------------------LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA- 283 (329)
T ss_dssp -----------------------------------------------CEEECCTT-CCEECTTTTTTCTTCCEEEEECT-
T ss_pred -----------------------------------------------CEEECCcc-cceehHHHhhCChhccEEEEEcc-
Confidence 66777776 6666677788888888 888888
Q ss_pred cccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEc
Q 036216 588 IFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNL 632 (695)
Q Consensus 588 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l 632 (695)
.++...+.+|.++++|+.+++++|.++...+.+|.++++|+.++.
T Consensus 284 ~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 284 SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 677666788888888888888888888777778888888888763
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=1.1e-17 Score=163.45 Aligned_cols=122 Identities=21% Similarity=0.271 Sum_probs=77.8
Q ss_pred CcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCC
Q 036216 5 LVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLP 84 (695)
Q Consensus 5 L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 84 (695)
++.++++++.++.++ .+..+++|++|++++|.++. ++ .+..+++|++|++++|++++..+ +..+++|++|+++
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS--LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc--ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 445566666666665 35666777777777777765 44 46667777777777777764433 6677777777777
Q ss_pred CCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCcc
Q 036216 85 FNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQ 138 (695)
Q Consensus 85 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 138 (695)
+|++++. |. +.. ++|++|++++|.+++. ..+..+++|++|++++|++++
T Consensus 94 ~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~ 142 (263)
T 1xeu_A 94 RNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS 142 (263)
T ss_dssp SSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB
T ss_pred CCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCC
Confidence 7777643 32 222 6677777777776642 246666677777776666654
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=8.5e-18 Score=164.19 Aligned_cols=171 Identities=22% Similarity=0.294 Sum_probs=116.6
Q ss_pred hccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEE
Q 036216 358 ETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTL 437 (695)
Q Consensus 358 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 437 (695)
.+.++..++++++.+++.. .+..+++|+.|++++|.++ .++ .+..+++|++|++++|++.+..+ +..+++|+.|
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 3556777778887777443 4677788888888888887 344 57778888888888888875444 7778888888
Q ss_pred EcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCc
Q 036216 438 DVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNA 517 (695)
Q Consensus 438 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~ 517 (695)
++++|.+.+ +|... . ++|+.|++++|++++. ..+..+++|+.|++++|++++. + .+..+++|
T Consensus 91 ~L~~N~l~~-l~~~~--~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L---------- 152 (263)
T 1xeu_A 91 SVNRNRLKN-LNGIP--S-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKL---------- 152 (263)
T ss_dssp ECCSSCCSC-CTTCC--C-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTC----------
T ss_pred ECCCCccCC-cCccc--c-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCC----------
Confidence 888887743 44322 2 6777777777777753 3577777777777777777632 2 33333333
Q ss_pred ccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCccccc
Q 036216 518 IEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGR 592 (695)
Q Consensus 518 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 592 (695)
+.|++++|++++. ..+..+++|+.|++++|.+.+.
T Consensus 153 --------------------------------------~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 153 --------------------------------------EVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp --------------------------------------CEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred --------------------------------------CEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 6667777777654 4566677777777777776643
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=9.6e-17 Score=148.69 Aligned_cols=133 Identities=23% Similarity=0.252 Sum_probs=120.7
Q ss_pred cEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCch-hhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCC
Q 036216 6 VELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPA-WVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLP 84 (695)
Q Consensus 6 ~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 84 (695)
++++++++.++.+|.... .++++|++++|.++.. .+. .+..+++|++|+|++|.+++..|..|.++++|++|+++
T Consensus 11 ~~l~~s~~~l~~ip~~~~---~~l~~L~l~~n~i~~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP---LHTTELLLNDNELGRI-SSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCSSCCSCCC---TTCSEEECCSCCCCSB-CCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcCcCccCCC---CCCCEEECCCCcCCcc-CCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 789999999999997433 3899999999999884 332 48899999999999999998889999999999999999
Q ss_pred CCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccch
Q 036216 85 FNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISE 142 (695)
Q Consensus 85 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 142 (695)
+|++++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|++....+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence 9999988888899999999999999999998899999999999999999999876653
No 120
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=4.2e-17 Score=165.47 Aligned_cols=102 Identities=22% Similarity=0.181 Sum_probs=57.6
Q ss_pred CCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCcc-EEEccCCCCCCC
Q 036216 176 FKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLI-ELGLRSCDVGSR 254 (695)
Q Consensus 176 l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~-~L~l~~~~~~~~ 254 (695)
+++|+++++++|+++ .|+...|.++++|+.+++..| +......+|..+.+|+ .+.+.+ .+...
T Consensus 225 ~~~L~~l~L~~n~i~--------------~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I 288 (329)
T 3sb4_A 225 MPNLVSLDISKTNAT--------------TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAI 288 (329)
T ss_dssp CTTCCEEECTTBCCC--------------EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEE
T ss_pred cCCCeEEECCCCCcc--------------eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEE
Confidence 566666666666654 566666666666666666665 5555555555555555 555554 44444
Q ss_pred CCccccCCCCCCEEEcccCCCccccChHHhhcccccceee
Q 036216 255 FPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLD 294 (695)
Q Consensus 255 ~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~ 294 (695)
.+..|..+++|+.++++.+.+. .++...|..+++|+.+.
T Consensus 289 ~~~aF~~c~~L~~l~l~~n~i~-~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 289 EFGAFMGCDNLRYVLATGDKIT-TLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CTTTTTTCTTEEEEEECSSCCC-EECTTTTCTTCCCCEEE
T ss_pred chhhhhCCccCCEEEeCCCccC-ccchhhhcCCcchhhhc
Confidence 4445555555555555555554 45554555555555443
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=3.6e-19 Score=192.69 Aligned_cols=85 Identities=24% Similarity=0.300 Sum_probs=50.8
Q ss_pred cEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccC-CcCCcCCCCCCEEEccc
Q 036216 556 RIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEI-PQSMSSLTFLNHLNLSN 634 (695)
Q Consensus 556 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~ls~ 634 (695)
+.|+|++|+++ .+|..++.+++|++|+|++|++++ +| .|+.+++|+.|+|++|++++.. |..+..+++|+.|++++
T Consensus 466 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~ 542 (567)
T 1dce_A 466 THLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG 542 (567)
T ss_dssp CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTT
T ss_pred cEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecC
Confidence 55556666655 555566666666666666666663 44 5566666666666666666544 66666666666666666
Q ss_pred CcCcccCCC
Q 036216 635 NYLTGKIPS 643 (695)
Q Consensus 635 N~l~~~iP~ 643 (695)
|++++.+|.
T Consensus 543 N~l~~~~~~ 551 (567)
T 1dce_A 543 NSLCQEEGI 551 (567)
T ss_dssp SGGGGSSSC
T ss_pred CcCCCCccH
Confidence 666655554
No 122
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.67 E-value=7.1e-16 Score=142.69 Aligned_cols=130 Identities=27% Similarity=0.306 Sum_probs=118.8
Q ss_pred cEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCC
Q 036216 6 VELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPF 85 (695)
Q Consensus 6 ~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 85 (695)
++++++++.++.+|... .++|++|++++|.++. +|..+.++++|++|+|++|.+++..+..|.++++|++|++++
T Consensus 13 ~~l~~~~~~l~~ip~~~---~~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI---PRDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCCcCCCCC---CCCCCEEECCCCcCch--hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 67999999999998743 3689999999999986 788999999999999999999988889999999999999999
Q ss_pred CCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCcccc
Q 036216 86 NHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEI 140 (695)
Q Consensus 86 n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 140 (695)
|.+++..|..|..+++|++|++++|.++...+..|..+++|++|++++|++....
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c 142 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDC 142 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCC
Confidence 9999888889999999999999999999776778999999999999999986543
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.66 E-value=2.2e-18 Score=186.52 Aligned_cols=197 Identities=20% Similarity=0.217 Sum_probs=159.1
Q ss_pred cCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCc-------------ceeeCCccccCCCCCcEEE-cCCCcccc
Q 036216 381 MSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNR-------------LSGTIPILLKNCTSLVTLD-VGENEVFG 446 (695)
Q Consensus 381 ~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~-------------l~~~~~~~~~~l~~L~~L~-l~~n~~~~ 446 (695)
..++.|+.|++++|.+. .+|..++.+++|+.|++++|. ..+..|..+..+++|+.|+ ++.|.+ .
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-D 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH-H
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc-c
Confidence 45789999999999998 678899999999999997765 3455667778888888888 566543 2
Q ss_pred cCChh------hh-hcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCccc
Q 036216 447 NIPSW------FG-ERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIE 519 (695)
Q Consensus 447 ~~~~~------~~-~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~ 519 (695)
.++.. +. -....|+.|++++|.+++ +|. ++.+++|+.|++++|+++ .+|..+..+++|
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L------------ 488 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCL------------ 488 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTC------------
T ss_pred hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCC------------
Confidence 22211 00 012468999999999986 665 999999999999999999 888888877776
Q ss_pred ccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccC-Ccccc
Q 036216 520 YSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRI-PETIG 598 (695)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~~~ 598 (695)
+.|+|++|++++ +| .++.+++|++|+|++|++++.. |..|+
T Consensus 489 ------------------------------------~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~ 530 (567)
T 1dce_A 489 ------------------------------------EVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLV 530 (567)
T ss_dssp ------------------------------------CEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGG
T ss_pred ------------------------------------CEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHh
Confidence 889999999996 66 8999999999999999999776 99999
Q ss_pred CcCCCCEEECCCCcccccCCcC---CcCCCCCCEEEc
Q 036216 599 TMRSLESIDFSVNKFTGEIPQS---MSSLTFLNHLNL 632 (695)
Q Consensus 599 ~l~~L~~L~Ls~n~l~~~~p~~---l~~l~~L~~L~l 632 (695)
.+++|+.|+|++|.+++..|.. +..+++|+.||+
T Consensus 531 ~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 531 SCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred cCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 9999999999999999655432 234789998875
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.66 E-value=4.5e-17 Score=182.05 Aligned_cols=191 Identities=21% Similarity=0.204 Sum_probs=120.5
Q ss_pred eecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcc
Q 036216 365 LFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEV 444 (695)
Q Consensus 365 L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 444 (695)
+++..|.+. ..+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|..+++|+.|+|++|.+
T Consensus 206 ~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l 282 (727)
T 4b8c_D 206 DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL 282 (727)
T ss_dssp -----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCC
T ss_pred cccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcC
Confidence 344445554 56778889999999999999998 67777778999999999999999 7888899999999999999999
Q ss_pred cccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCC
Q 036216 445 FGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPL 524 (695)
Q Consensus 445 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~ 524 (695)
. .+|..+. .+++|++|+|++|.++ .+|..|+.+++|++|+|++|++++.+|..+..+....
T Consensus 283 ~-~lp~~~~-~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~---------------- 343 (727)
T 4b8c_D 283 T-SLPAELG-SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTG---------------- 343 (727)
T ss_dssp S-SCCSSGG-GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHH----------------
T ss_pred C-ccChhhc-CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhh----------------
Confidence 5 8888876 7999999999999997 7788899999999999999999988888876543220
Q ss_pred CCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCC--------cccccCCcc
Q 036216 525 NSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYN--------IFTGRIPET 596 (695)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n--------~l~~~~p~~ 596 (695)
..+++++|.+++.+|. .|+.|++++| .+.+..+..
T Consensus 344 -------------------------------~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~ 386 (727)
T 4b8c_D 344 -------------------------------LIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHL 386 (727)
T ss_dssp -------------------------------HHHHHHHCCCCCCCCC------C--------------------------
T ss_pred -------------------------------hHHhhccCcccCcCcc------ccceeEeecccccccccCCccccccch
Confidence 2356778888877775 4455666666 333334444
Q ss_pred ccCcCCCCEEECCCCccc
Q 036216 597 IGTMRSLESIDFSVNKFT 614 (695)
Q Consensus 597 ~~~l~~L~~L~Ls~n~l~ 614 (695)
+..+..++...+++|.+.
T Consensus 387 ~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 387 ATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp ---------------CCC
T ss_pred hhcccccceeeeeccccc
Confidence 455566666667777664
No 125
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.64 E-value=7.8e-17 Score=180.15 Aligned_cols=155 Identities=24% Similarity=0.296 Sum_probs=116.5
Q ss_pred CCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCCCCCchhhhc
Q 036216 18 FPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFD 97 (695)
Q Consensus 18 ~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 97 (695)
+++..|..++.|++|+|++|.+.. +|..++.+++|++|+|++|.++ .+|..|.++++|++|+|++|.++ .+|..|+
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~ 290 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELG 290 (727)
T ss_dssp -------CCCCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGG
T ss_pred cChhhhccCCCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhc
Confidence 345678888999999999999986 7777889999999999999998 78888999999999999999998 6788899
Q ss_pred CCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcccccccchhcCCCC
Q 036216 98 RLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFK 177 (695)
Q Consensus 98 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~ 177 (695)
.+++|++|+|++|.++ .+|..|+++++|++|+|++|.+.+.+|..+ .........+++++|.+++.+|.
T Consensus 291 ~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~----~~~~~~~~~l~l~~N~l~~~~p~------ 359 (727)
T 4b8c_D 291 SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL----TEKSVTGLIFYLRDNRPEIPLPH------ 359 (727)
T ss_dssp GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH----HHHHHHHHHHHHHHCCCCCCCCC------
T ss_pred CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHH----hhcchhhhHHhhccCcccCcCcc------
Confidence 9999999999999987 678889999999999999999988877743 22222134577888888887765
Q ss_pred CCCEEEccCC
Q 036216 178 NLDSLDLSNN 187 (695)
Q Consensus 178 ~L~~L~L~~n 187 (695)
.|+.|+++.|
T Consensus 360 ~l~~l~l~~n 369 (727)
T 4b8c_D 360 ERRFIEINTD 369 (727)
T ss_dssp C---------
T ss_pred ccceeEeecc
Confidence 3455666665
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.64 E-value=4.8e-15 Score=135.49 Aligned_cols=134 Identities=25% Similarity=0.245 Sum_probs=119.1
Q ss_pred CcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCC
Q 036216 5 LVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLP 84 (695)
Q Consensus 5 L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 84 (695)
.+.++++++.++.+|... .++|++|++++|.+++. .+..+..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus 9 ~~~l~~~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI---PSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCSSCCTTC---CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCccCCCCC---CCCCcEEEeCCCcccEe-CHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 478999999999998633 37899999999999974 55567899999999999999997777888999999999999
Q ss_pred CCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccch
Q 036216 85 FNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISE 142 (695)
Q Consensus 85 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 142 (695)
+|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|++.+..+.
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 142 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 142 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCcc
Confidence 9999988777889999999999999999976666789999999999999999887763
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=4.2e-16 Score=141.26 Aligned_cols=137 Identities=20% Similarity=0.184 Sum_probs=68.6
Q ss_pred CCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEE
Q 036216 27 STLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLS 106 (695)
Q Consensus 27 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 106 (695)
++|++|++++|.++...+|..+..+++|++|++++|.++.. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45555555555554111444455555555555555555533 4455555555555555555544555555555555555
Q ss_pred cccCcCCccc-chhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCccccc
Q 036216 107 LSYNSLEGRI-PRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISG 167 (695)
Q Consensus 107 Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~ 167 (695)
+++|.+++.. +..+..+++|++|++++|++.+..+ .....+..++. |++|++++|.+..
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~-~~~~~~~~l~~-L~~L~l~~n~~~~ 161 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND-YRESVFKLLPQ-LTYLDGYDREDQE 161 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT-HHHHHHTTCSS-CCEETTEETTSCB
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHH-HHHHHHHhCcc-CcEecCCCCChhh
Confidence 5555555321 1455555555555555555544332 00112333333 5555555555443
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=6.7e-16 Score=136.78 Aligned_cols=111 Identities=23% Similarity=0.257 Sum_probs=59.0
Q ss_pred CCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEE
Q 036216 27 STLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLS 106 (695)
Q Consensus 27 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 106 (695)
++|++|++++|.++...+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 44555555555554111444455555555555555555533 4455555555555555555544555555555555555
Q ss_pred cccCcCCcc-cchhhcCCCCCCEEEccCCcCccc
Q 036216 107 LSYNSLEGR-IPRSMARLCNLRRLYLGGAKLNQE 139 (695)
Q Consensus 107 Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~ 139 (695)
+++|.+++. .+..++.+++|++|++++|++++.
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 128 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL 128 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGS
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccch
Confidence 555555532 224555555555555555555443
No 129
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.63 E-value=1.7e-14 Score=149.06 Aligned_cols=267 Identities=10% Similarity=0.075 Sum_probs=177.7
Q ss_pred CCCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEe
Q 036216 3 PSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLG 82 (695)
Q Consensus 3 ~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 82 (695)
..++.+.+.+ .++.|+..+|.++ +|+.+++..+ ++.+ -..+|.+ .+|+.+.+.. .++.+.+.+|.+|++|+.++
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I-~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSI-GDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEE-CTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEE-CHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 4566666654 5788888899886 7999999877 6654 4455656 4799999986 67767788999999999999
Q ss_pred CCCCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccC
Q 036216 83 LPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALAS 162 (695)
Q Consensus 83 L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~ 162 (695)
+++|.++.+...+|. +.+|+.+.+..+ ++.+...+|.++++|+.+++..+ +...... .+.. . +|+.+.+ .
T Consensus 187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~----aF~~-~-~L~~i~l-p 256 (401)
T 4fdw_A 187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQE----AFRE-S-GITTVKL-P 256 (401)
T ss_dssp CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTT----TTTT-C-CCSEEEE-E
T ss_pred cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccc----cccc-C-CccEEEe-C
Confidence 999999866666676 689999999854 66677788999999999999875 3333333 2222 2 3788877 4
Q ss_pred cccccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCcc
Q 036216 163 SSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLI 242 (695)
Q Consensus 163 n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 242 (695)
+.++.+...+|.++++|+.+++.++.+... -...++...|.+|++|+.+.+. +.++.....+|..+.+|+
T Consensus 257 ~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~---------~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~ 326 (401)
T 4fdw_A 257 NGVTNIASRAFYYCPELAEVTTYGSTFNDD---------PEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVT 326 (401)
T ss_dssp TTCCEECTTTTTTCTTCCEEEEESSCCCCC---------TTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCC
T ss_pred CCccEEChhHhhCCCCCCEEEeCCccccCC---------cccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCcc
Confidence 456666677788888888888877665210 0113666677777777777777 345655666666666666
Q ss_pred EEEccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHhhccc-ccceeecccc
Q 036216 243 ELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSAS-QLYLLDLGHN 298 (695)
Q Consensus 243 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~-~L~~L~l~~n 298 (695)
.+.+..+ +.......|..+ +|+.+++.++.+. .++...|..++ .++.+.+..+
T Consensus 327 ~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~-~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 327 QLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP-QVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp EEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC-BCCCSSCCCSCTTCCEEEECGG
T ss_pred EEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc-ccccccccCCCCCccEEEeCHH
Confidence 6666433 333334445555 5666666555544 33333333332 3444444443
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.63 E-value=2.7e-15 Score=138.75 Aligned_cols=129 Identities=22% Similarity=0.311 Sum_probs=103.9
Q ss_pred cEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEE
Q 036216 460 VLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELV 539 (695)
Q Consensus 460 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 539 (695)
+.+++++|.++ .+|..+. ++|++|++++|+++ .+|..|..+++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L-------------------------------- 56 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHL-------------------------------- 56 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTC--------------------------------
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCC--------------------------------
Confidence 45666666665 4454432 57888888888887 666666666555
Q ss_pred EecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCc
Q 036216 540 VTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQ 619 (695)
Q Consensus 540 ~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~ 619 (695)
+.|++++|+|++..+..|.++++|++|+|++|++++..|..|+.+++|+.|+|++|++++..+.
T Consensus 57 ----------------~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~ 120 (193)
T 2wfh_A 57 ----------------TLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEG 120 (193)
T ss_dssp ----------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTT
T ss_pred ----------------CEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChh
Confidence 7788888888877778899999999999999999988888899999999999999999976666
Q ss_pred CCcCCCCCCEEEcccCcCccc
Q 036216 620 SMSSLTFLNHLNLSNNYLTGK 640 (695)
Q Consensus 620 ~l~~l~~L~~L~ls~N~l~~~ 640 (695)
.|..+++|++|++++|++...
T Consensus 121 ~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 121 AFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp TTTTCTTCCEEECCSSCEECS
T ss_pred hhhcCccccEEEeCCCCeecC
Confidence 789999999999999998754
No 131
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=5.4e-16 Score=140.50 Aligned_cols=83 Identities=23% Similarity=0.189 Sum_probs=54.5
Q ss_pred cEEEcCCccccccCCccccCCCCCCEEeccCCcccccC-CccccCcCCCCEEECCCCcccccCC---cCCcCCCCCCEEE
Q 036216 556 RIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRI-PETIGTMRSLESIDFSVNKFTGEIP---QSMSSLTFLNHLN 631 (695)
Q Consensus 556 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~n~l~~~~p---~~l~~l~~L~~L~ 631 (695)
++|++++|++++.+|..+..+++|++|++++|.+++.. +..++.+++|+.|++++|.+++..+ ..+..+++|++|+
T Consensus 74 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~ 153 (168)
T 2ell_A 74 KKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD 153 (168)
T ss_dssp CEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEET
T ss_pred CEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEec
Confidence 56666666666556666666677777777777776321 1566777777777777777774433 3667777777777
Q ss_pred cccCcCc
Q 036216 632 LSNNYLT 638 (695)
Q Consensus 632 ls~N~l~ 638 (695)
+++|++.
T Consensus 154 l~~n~~~ 160 (168)
T 2ell_A 154 GYDREDQ 160 (168)
T ss_dssp TEETTSC
T ss_pred CCCCChh
Confidence 7777665
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=6.5e-16 Score=136.85 Aligned_cols=128 Identities=21% Similarity=0.205 Sum_probs=78.0
Q ss_pred CCCCcEEEcCCCccc-ccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccc
Q 036216 456 FSRMVLLILRSNNFD-GPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVT 534 (695)
Q Consensus 456 l~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~ 534 (695)
.++|+.|++++|.++ +.+|..+..+++|++|++++|++++. ..+..+++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~---------------------------- 65 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNK---------------------------- 65 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTT----------------------------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCC----------------------------
Confidence 345666666666665 45555566666666666666666532 22333222
Q ss_pred cceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCccccc-CCccccCcCCCCEEECCCCcc
Q 036216 535 EQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGR-IPETIGTMRSLESIDFSVNKF 613 (695)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~n~l 613 (695)
|++|++++|.+++.+|..+..+++|++|++++|.+++. .|..++.+++|+.|++++|.+
T Consensus 66 --------------------L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l 125 (149)
T 2je0_A 66 --------------------LKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125 (149)
T ss_dssp --------------------CCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGG
T ss_pred --------------------CCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcc
Confidence 25666666666655666666667777777777777642 235667777777777777777
Q ss_pred cccCC---cCCcCCCCCCEEEcc
Q 036216 614 TGEIP---QSMSSLTFLNHLNLS 633 (695)
Q Consensus 614 ~~~~p---~~l~~l~~L~~L~ls 633 (695)
++..+ ..+..+++|++||++
T Consensus 126 ~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 126 TNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp GGSTTHHHHHHHHCTTCCEETTB
T ss_pred cchHHHHHHHHHHCCCcccccCC
Confidence 65444 356667777777765
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.60 E-value=4.9e-15 Score=135.39 Aligned_cols=89 Identities=16% Similarity=0.146 Sum_probs=75.3
Q ss_pred cEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccC
Q 036216 556 RIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNN 635 (695)
Q Consensus 556 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N 635 (695)
++|++++|++++..+..|..+++|++|++++|++++..+..|+.+++|+.|++++|++++..+..+..+++|++|++++|
T Consensus 55 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 55 TKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC
Confidence 67777777777666666788999999999999999777777899999999999999999666666788999999999999
Q ss_pred cCcccCCCC
Q 036216 636 YLTGKIPSS 644 (695)
Q Consensus 636 ~l~~~iP~~ 644 (695)
++.+..|..
T Consensus 135 ~~~~~~~~l 143 (177)
T 2o6r_A 135 PWDCSCPRI 143 (177)
T ss_dssp CBCCCHHHH
T ss_pred CeeccCccH
Confidence 999887743
No 134
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.60 E-value=2.3e-14 Score=149.09 Aligned_cols=101 Identities=14% Similarity=0.117 Sum_probs=68.6
Q ss_pred hhhccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCc
Q 036216 356 INETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLV 435 (695)
Q Consensus 356 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 435 (695)
|..+.+|+.+.+..+ ++.....+|.++++|+.+++..+ ++.....+|.+|.+|+.+.+..+ ++.+-..+|.+|.+|+
T Consensus 293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~ 369 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLK 369 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCC
T ss_pred ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCC
Confidence 335667777777654 44455567888888888888754 55566778888888888888766 6656677888888888
Q ss_pred EEEcCCCcccccCChhhhhcCCCCcEE
Q 036216 436 TLDVGENEVFGNIPSWFGERFSRMVLL 462 (695)
Q Consensus 436 ~L~l~~n~~~~~~~~~~~~~l~~L~~L 462 (695)
.+++..+- ..+...+ .++++|+.+
T Consensus 370 ~i~lp~~~--~~~~~~F-~~c~~L~~I 393 (394)
T 4fs7_A 370 KVELPKRL--EQYRYDF-EDTTKFKWI 393 (394)
T ss_dssp EEEEEGGG--GGGGGGB-CTTCEEEEE
T ss_pred EEEECCCC--EEhhhee-cCCCCCcEE
Confidence 88886542 2233222 356666643
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.58 E-value=1.1e-13 Score=143.20 Aligned_cols=242 Identities=12% Similarity=0.116 Sum_probs=196.4
Q ss_pred CCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeC
Q 036216 4 SLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGL 83 (695)
Q Consensus 4 ~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 83 (695)
+|+.+.+..+ ++.|...+|.++ +|+.+.+.. .+..+ -+.+|.+|++|+.+++++|.++.+...+|. +.+|+.+.+
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I-~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~l 210 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQL-KEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLL 210 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEE-CSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEEC
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEe-hHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEe
Confidence 6888998766 889999999995 699999986 66654 557788999999999999999977777777 689999999
Q ss_pred CCCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCc
Q 036216 84 PFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASS 163 (695)
Q Consensus 84 ~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n 163 (695)
..+ ++.+...+|.++++|+.+++..+ ++.+...+|.+ .+|+.+.+.. .+...... .+..+.. |+.+.+.++
T Consensus 211 p~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~----aF~~c~~-L~~l~l~~~ 281 (401)
T 4fdw_A 211 PVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTNIASR----AFYYCPE-LAEVTTYGS 281 (401)
T ss_dssp CTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCEECTT----TTTTCTT-CCEEEEESS
T ss_pred CCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccEEChh----HhhCCCC-CCEEEeCCc
Confidence 855 77677889999999999999875 56566677777 7899999954 44444343 4555666 999999888
Q ss_pred ccc-----cccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCC
Q 036216 164 SIS-----GHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPP 238 (695)
Q Consensus 164 ~~~-----~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 238 (695)
.+. .+...+|.++++|+.+++.. .++ .|+...|.+|++|+.+.+..+ ++.....+|..+
T Consensus 282 ~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~--------------~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~ 345 (401)
T 4fdw_A 282 TFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR--------------ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT 345 (401)
T ss_dssp CCCCCTTCEECTTTTTTCTTCCEECCCT-TCC--------------EECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS
T ss_pred cccCCcccEECHHHhhCCccCCeEEeCC-ceE--------------EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC
Confidence 765 56678899999999999984 464 788889999999999999665 777888899999
Q ss_pred CCccEEEccCCCCCCCCCccccCCC-CCCEEEcccCCCc
Q 036216 239 FQLIELGLRSCDVGSRFPLWLYSQK-DLQFLDLFNSGIS 276 (695)
Q Consensus 239 ~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~i~ 276 (695)
+|+.+.+.++......+..|..++ .++.|.+..+.+.
T Consensus 346 -~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 346 -GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp -CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred -CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 999999999988777777777774 7889988776543
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.56 E-value=7.4e-15 Score=133.99 Aligned_cols=137 Identities=18% Similarity=0.150 Sum_probs=72.8
Q ss_pred CCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCCCCCchhhhcCCCCC
Q 036216 23 VANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHL 102 (695)
Q Consensus 23 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 102 (695)
+.++.+|++|++++|.++. +|......++|++|++++|.+++. ..|..+++|++|++++|.+++..+..|..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 4455566666666666654 333222223666666666666543 455666666666666666664433444566666
Q ss_pred CEEEcccCcCCcccch--hhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcccc
Q 036216 103 EHLSLSYNSLEGRIPR--SMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSIS 166 (695)
Q Consensus 103 ~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~ 166 (695)
++|++++|.+. .+|. .+..+++|++|++++|++... +......+..++. |+.|+++.|...
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~-L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQ-VRVLDFQKVKLK 153 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTT-CSEETTEECCHH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCc-cceeCCCcCCHH
Confidence 66666666664 3333 555666666666666665432 2211112334444 666666665543
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.53 E-value=1.8e-14 Score=131.45 Aligned_cols=129 Identities=20% Similarity=0.150 Sum_probs=80.3
Q ss_pred CCCCcEEEcCCCcCCCCCccCCCCCC-CCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCE
Q 036216 2 LPSLVELDLSNCQLHHFPQLPVANFS-TLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKH 80 (695)
Q Consensus 2 l~~L~~L~ls~~~l~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 80 (695)
+++|++|++++|.++.++. +..+. +|++|++++|.+++ + ..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 18 ~~~L~~L~l~~n~l~~i~~--~~~~~~~L~~L~Ls~N~l~~--~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIEN--LGATLDQFDAIDFSDNEIRK--L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp TTSCEEEECTTSCCCSCCC--GGGGTTCCSEEECCSSCCCE--E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred cCCceEEEeeCCCCchhHH--hhhcCCCCCEEECCCCCCCc--c-cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 4566677777776666632 33333 67777777776665 3 45566667777777777766544444566677777
Q ss_pred EeCCCCCCCCCchh--hhcCCCCCCEEEcccCcCCcccch----hhcCCCCCCEEEccCCcCc
Q 036216 81 LGLPFNHFSSSVPK--WFDRLTHLEHLSLSYNSLEGRIPR----SMARLCNLRRLYLGGAKLN 137 (695)
Q Consensus 81 L~L~~n~l~~~~p~--~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~ 137 (695)
|++++|.++ .+|. .+..+++|++|++++|.+. ..|. .+..+++|++|++++|...
T Consensus 93 L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 93 LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 777777665 3443 5666667777777777666 3344 2666677777776666543
No 138
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.51 E-value=8.5e-13 Score=137.26 Aligned_cols=60 Identities=5% Similarity=0.101 Sum_probs=36.1
Q ss_pred cCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEE
Q 036216 568 TLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHL 630 (695)
Q Consensus 568 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 630 (695)
+-..+|.++++|+.+++..+ ++.....+|.++++|+.+++..+ +. .+..+|.++++|+.+
T Consensus 334 I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 334 IGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp ECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred EhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 33455666677777777655 55455566777777777777644 22 234566666666543
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.49 E-value=4.1e-16 Score=145.40 Aligned_cols=129 Identities=21% Similarity=0.275 Sum_probs=83.9
Q ss_pred cCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccc
Q 036216 455 RFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVT 534 (695)
Q Consensus 455 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~ 534 (695)
.+++|++|++++|++++ +| .+..+++|++|++++|+++ .+|..+..+++|
T Consensus 46 ~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L--------------------------- 95 (198)
T 1ds9_A 46 TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL--------------------------- 95 (198)
T ss_dssp HTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC---------------------------
T ss_pred cCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC---------------------------
Confidence 46666666666666664 44 5666677777777777666 455544444443
Q ss_pred cceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCC-ccccCcCCCCEEECCCCcc
Q 036216 535 EQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIP-ETIGTMRSLESIDFSVNKF 613 (695)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~n~l 613 (695)
+.|++++|++++ +| .+..+++|++|++++|++++..+ ..++.+++|+.|++++|.+
T Consensus 96 ---------------------~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 96 ---------------------EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp ---------------------SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred ---------------------CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 667777777764 33 56677777777777777773322 3567777777777777777
Q ss_pred cccCCcC----------CcCCCCCCEEEcccCcCc
Q 036216 614 TGEIPQS----------MSSLTFLNHLNLSNNYLT 638 (695)
Q Consensus 614 ~~~~p~~----------l~~l~~L~~L~ls~N~l~ 638 (695)
.+..|.. +..+++|++|| +|+++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 153 YNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred ccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 7665543 66777777776 56554
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.47 E-value=3.4e-13 Score=121.79 Aligned_cols=109 Identities=28% Similarity=0.292 Sum_probs=74.7
Q ss_pred CCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEEcc
Q 036216 29 LTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLS 108 (695)
Q Consensus 29 L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 108 (695)
.+++++++|.++. +|..+ .++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|..+++|++|+++
T Consensus 11 ~~~l~~s~n~l~~--ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLAS--VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCSS--CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCc--cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 4566667666665 55544 2667777777777776666677777777777777777776666666777777777777
Q ss_pred cCcCCcccchhhcCCCCCCEEEccCCcCccccc
Q 036216 109 YNSLEGRIPRSMARLCNLRRLYLGGAKLNQEIS 141 (695)
Q Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 141 (695)
+|.+++..+..|..+++|++|++++|++....+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 777776555567777777777777777765543
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.47 E-value=2.9e-13 Score=122.23 Aligned_cols=107 Identities=27% Similarity=0.221 Sum_probs=96.7
Q ss_pred CcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCC
Q 036216 5 LVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLP 84 (695)
Q Consensus 5 L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 84 (695)
.++++++++.++.+|... .++|++|+|++|.|++. .|..|.++++|++|+|++|++++..+..|..+++|++|+|+
T Consensus 11 ~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKL-EPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCccCccC---CCCCcEEEcCCCcCCcc-ChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 578999999999998743 38899999999999986 68889999999999999999998888889999999999999
Q ss_pred CCCCCCCchhhhcCCCCCCEEEcccCcCCcc
Q 036216 85 FNHFSSSVPKWFDRLTHLEHLSLSYNSLEGR 115 (695)
Q Consensus 85 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ 115 (695)
+|++++..+..|..+++|++|++++|.+...
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 9999987777899999999999999998743
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.45 E-value=5.4e-13 Score=120.85 Aligned_cols=108 Identities=24% Similarity=0.283 Sum_probs=80.9
Q ss_pred CEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEEccc
Q 036216 30 TTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSY 109 (695)
Q Consensus 30 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 109 (695)
+.+++++|.++. +|..+. ++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|.++++|++|++++
T Consensus 15 ~~l~~~~n~l~~--iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLAS--VPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCSS--CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCCc--cCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 677777777765 666553 6778888888888777777788888888888888888766566677788888888888
Q ss_pred CcCCcccchhhcCCCCCCEEEccCCcCccccc
Q 036216 110 NSLEGRIPRSMARLCNLRRLYLGGAKLNQEIS 141 (695)
Q Consensus 110 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 141 (695)
|.+++..+..|..+++|++|++++|++....+
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 88876555567788888888888887765543
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.44 E-value=6.1e-13 Score=120.51 Aligned_cols=106 Identities=25% Similarity=0.228 Sum_probs=93.7
Q ss_pred CcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCC
Q 036216 5 LVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLP 84 (695)
Q Consensus 5 L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 84 (695)
-+.++++++.++.+|... .++|++|+|++|.+++. .|..|.++++|++|+|++|++++..+..|.++++|++|+|+
T Consensus 14 ~~~l~~~~n~l~~iP~~~---~~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGI---PTDKQRLWLNNNQITKL-EPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCCCCccCCCc---CCCCcEEEeCCCCcccc-CHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 368999999999998743 28899999999999986 67888999999999999999997777778999999999999
Q ss_pred CCCCCCCchhhhcCCCCCCEEEcccCcCCc
Q 036216 85 FNHFSSSVPKWFDRLTHLEHLSLSYNSLEG 114 (695)
Q Consensus 85 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~ 114 (695)
+|++++..+..|..+++|++|++++|.+..
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 999997766679999999999999999883
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.43 E-value=2.7e-15 Score=139.82 Aligned_cols=132 Identities=17% Similarity=0.184 Sum_probs=82.7
Q ss_pred cccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhccc
Q 036216 427 LLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTA 506 (695)
Q Consensus 427 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 506 (695)
.+..+++|++|++++|.+.+ +| .+. .+++|+.|++++|.++ .+|..+..+++|++|++++|++++ +| .+..+++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~-~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~ 116 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLS-GMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVN 116 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHH-HHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccc-cCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCC
Confidence 44455555555555555532 44 222 4555666666666555 345555556677777777777763 33 3444444
Q ss_pred CcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCC-ccccCCCCCCEEecc
Q 036216 507 MATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLP-MGLTNLKAVQSLNLS 585 (695)
Q Consensus 507 L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls 585 (695)
| +.|++++|++++..+ ..+..+++|++|+++
T Consensus 117 L------------------------------------------------~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~ 148 (198)
T 1ds9_A 117 L------------------------------------------------RVLYMSNNKITNWGEIDKLAALDKLEDLLLA 148 (198)
T ss_dssp S------------------------------------------------SEEEESEEECCCHHHHHHHTTTTTCSEEEEC
T ss_pred C------------------------------------------------CEEECCCCcCCchhHHHHHhcCCCCCEEEec
Confidence 3 677777777774322 467788888999999
Q ss_pred CCcccccCCcc----------ccCcCCCCEEECCCCccc
Q 036216 586 YNIFTGRIPET----------IGTMRSLESIDFSVNKFT 614 (695)
Q Consensus 586 ~n~l~~~~p~~----------~~~l~~L~~L~Ls~n~l~ 614 (695)
+|.+.+..|.. +..+++|+.|| +|.++
T Consensus 149 ~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 149 GNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 99887666543 78889999887 66665
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.39 E-value=2.1e-14 Score=147.01 Aligned_cols=138 Identities=20% Similarity=0.183 Sum_probs=66.0
Q ss_pred CCCCEEEcCCCcCcccCCccC-CCCCCCCEEeCCCCCCCCCchhhh-----cCCCCCCEEEcccCcCCc----ccchhhc
Q 036216 52 SRLHFLNLGYNNFQGPIPEGL-QNLTSLKHLGLPFNHFSSSVPKWF-----DRLTHLEHLSLSYNSLEG----RIPRSMA 121 (695)
Q Consensus 52 ~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~p~~~-----~~l~~L~~L~Ls~n~l~~----~~~~~~~ 121 (695)
++|++|+|++|.+.......+ ..+++|++|+|++|.++......+ ...++|++|+|++|.++. .++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 455555555555543222222 223455555555555543322222 234555555555555542 1233334
Q ss_pred CCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCccccccc----chhcCCCCCCCEEEccCCCcC
Q 036216 122 RLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHL----TDQLGQFKNLDSLDLSNNSIV 190 (695)
Q Consensus 122 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~----~~~l~~l~~L~~L~L~~n~i~ 190 (695)
.+++|++|+|++|.+.+.....+...+..... |++|+|++|.++... ...+...+.|++|+|++|.|+
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~-L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQ-LQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSC-CCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCC-cCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 55555555555555544333333333333333 566666665554322 233444566666666666664
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.36 E-value=6.2e-11 Score=123.16 Aligned_cols=128 Identities=13% Similarity=0.160 Sum_probs=65.8
Q ss_pred hccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEE
Q 036216 358 ETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTL 437 (695)
Q Consensus 358 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 437 (695)
.+..|+.+.+..+... ....+|.++++|+.+.+.. .++.....+|.++.+|+.+.+..+ ++.+-..+|.+|.+|+.+
T Consensus 263 ~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i 339 (394)
T 4gt6_A 263 SCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERI 339 (394)
T ss_dssp TCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred ecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEE
Confidence 3444444444433222 3334566666666666653 344344556666666666666543 444555666677777777
Q ss_pred EcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcC
Q 036216 438 DVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNL 493 (695)
Q Consensus 438 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l 493 (695)
.+..+ + ..+....+.++++|+.+++.++.... .++..+..|+.+.+..+.+
T Consensus 340 ~ip~s-v-~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 340 AIPSS-V-TKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp EECTT-C-CBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred EECcc-c-CEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 76543 3 44555555566677776666654331 3456667777777665543
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.29 E-value=5.2e-13 Score=136.62 Aligned_cols=172 Identities=17% Similarity=0.158 Sum_probs=119.1
Q ss_pred CCCCCEEEcCCCcCcccCCccC----C-CCCCCCEEeCCCCCCCCCchhhh-cCCCCCCEEEcccCcCCcccchhh----
Q 036216 51 LSRLHFLNLGYNNFQGPIPEGL----Q-NLTSLKHLGLPFNHFSSSVPKWF-DRLTHLEHLSLSYNSLEGRIPRSM---- 120 (695)
Q Consensus 51 l~~L~~L~Ls~n~i~~~~~~~~----~-~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~Ls~n~l~~~~~~~~---- 120 (695)
+++|++|+|++|.++......+ . ..++|++|+|++|.++......+ ..+++|++|+|++|.+.......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4678888998888875433333 2 23689999999998875433333 345688999999998875443343
Q ss_pred -cCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCccccccc----chhcCCCCCCCEEEccCCCcCCCceE
Q 036216 121 -ARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHL----TDQLGQFKNLDSLDLSNNSIVGPRVL 195 (695)
Q Consensus 121 -~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~----~~~l~~l~~L~~L~L~~n~i~~~~~~ 195 (695)
...++|++|++++|.++......+...+..... |++|+|++|.+.... ...+...++|++|+|++|.|++...
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~-L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~- 228 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTS-VTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA- 228 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSS-CCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH-
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCC-cCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH-
Confidence 346789999999998876555544445555555 999999999887543 5566777889999999998863210
Q ss_pred EeeccccccccChhhhhCCCCCCEEEcccccceeecCC
Q 036216 196 QLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKR 233 (695)
Q Consensus 196 ~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~ 233 (695)
..+.. .+...+.|+.|++++|.+......
T Consensus 229 --------~~l~~-~L~~~~~L~~L~Ls~N~i~~~g~~ 257 (372)
T 3un9_A 229 --------LALAR-AAREHPSLELLHLYFNELSSEGRQ 257 (372)
T ss_dssp --------HHHHH-HHHHCSSCCEEECTTSSCCHHHHH
T ss_pred --------HHHHH-HHHhCCCCCEEeccCCCCCHHHHH
Confidence 02333 567788899999999988765443
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.27 E-value=9.3e-10 Score=114.22 Aligned_cols=42 Identities=14% Similarity=0.135 Sum_probs=19.0
Q ss_pred CCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcc
Q 036216 569 LPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKF 613 (695)
Q Consensus 569 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l 613 (695)
-..+|.++++|+.+++.++.... ..+...++|+.+.+..+.+
T Consensus 349 ~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 349 PESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred hHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 34456666777777776665431 3455666677666665544
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.20 E-value=4.6e-11 Score=121.98 Aligned_cols=106 Identities=24% Similarity=0.302 Sum_probs=77.3
Q ss_pred EEECCCC-CCCCCCCchhhcCCCCCCEEEcCC-CcCcccCCccCCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEEcc
Q 036216 31 TLDLSHN-QFDNSFVPAWVFGLSRLHFLNLGY-NNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLS 108 (695)
Q Consensus 31 ~L~Ls~n-~i~~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 108 (695)
.++.+++ .++. +|. +..+++|++|+|++ |.+++..+..|.++++|++|+|++|++++..|..|.++++|++|+|+
T Consensus 12 ~v~~~~~n~l~~--ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALDS--LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCTT--TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCCc--cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 4577776 6766 666 77777777777775 77776666777778888888888888777777777778888888888
Q ss_pred cCcCCcccchhhcCCCCCCEEEccCCcCcccc
Q 036216 109 YNSLEGRIPRSMARLCNLRRLYLGGAKLNQEI 140 (695)
Q Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 140 (695)
+|++++..+..|..++ |+.|++.+|.+....
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c 119 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHCSC 119 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCCCG
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccCCC
Confidence 8887755555555554 888888888776543
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.18 E-value=6.2e-11 Score=121.04 Aligned_cols=105 Identities=23% Similarity=0.238 Sum_probs=88.1
Q ss_pred cEEEcCCC-cCCCCCccCCCCCCCCCEEECCC-CCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeC
Q 036216 6 VELDLSNC-QLHHFPQLPVANFSTLTTLDLSH-NQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGL 83 (695)
Q Consensus 6 ~~L~ls~~-~l~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 83 (695)
..++++++ .++.+|. +..+++|++|+|++ |.++.+ .+..|.++++|++|+|++|++++..|..|.++++|++|+|
T Consensus 11 ~~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp SCEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred CEEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 35788888 8888887 88888999999986 888874 5577888999999999999999888888999999999999
Q ss_pred CCCCCCCCchhhhcCCCCCCEEEcccCcCCc
Q 036216 84 PFNHFSSSVPKWFDRLTHLEHLSLSYNSLEG 114 (695)
Q Consensus 84 ~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~ 114 (695)
++|++++..+..|..+. |++|++++|.+..
T Consensus 88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 99999876666666665 9999999998873
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.13 E-value=8e-09 Score=106.67 Aligned_cols=72 Identities=11% Similarity=0.164 Sum_probs=34.5
Q ss_pred ccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCC
Q 036216 359 TMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCT 432 (695)
Q Consensus 359 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 432 (695)
+.+|+.+.+.++.++.....+|.+|.+|+.+.+..+ ++.....+|.+|.+|+.+.+..+ ++.+-..+|.++.
T Consensus 285 c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 285 CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp CTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred ccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 444444444444444333445555555555555433 33334445555555555555433 3334444555543
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.98 E-value=5.1e-08 Score=100.57 Aligned_cols=108 Identities=19% Similarity=0.266 Sum_probs=52.7
Q ss_pred ccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCC
Q 036216 378 DCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFS 457 (695)
Q Consensus 378 ~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 457 (695)
.++..+.+|+.+.+..+ +.......|.++..|+.+.+..+ ++.+-..+|.++.+|+.+.+..+ + ..++...+..++
T Consensus 211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i-~~i~~~aF~~c~ 286 (379)
T 4h09_A 211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-V-KTVPYLLCSGCS 286 (379)
T ss_dssp TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-C-SEECTTTTTTCT
T ss_pred cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-c-eecccccccccc
Confidence 34445555555555443 22234445555555666555543 33344445555555665555432 2 233333333455
Q ss_pred CCcEEEcCCCcccccCCccccCCCCCCEEeCC
Q 036216 458 RMVLLILRSNNFDGPLPTELCDLAFLQILDLA 489 (695)
Q Consensus 458 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~ 489 (695)
+|+.+.+.++.++..-..+|.+|.+|+.+.|.
T Consensus 287 ~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 287 NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp TCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred ccccccccccccceehhhhhcCCCCCCEEEcC
Confidence 55555555544443334455555555555553
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.80 E-value=4.2e-09 Score=106.58 Aligned_cols=59 Identities=15% Similarity=0.402 Sum_probs=30.7
Q ss_pred CCCCCEEeccCCccccc----CCccccCcCCCCEEECCCCcccccCCcCCcC-CCCCCEEEcccCc
Q 036216 576 LKAVQSLNLSYNIFTGR----IPETIGTMRSLESIDFSVNKFTGEIPQSMSS-LTFLNHLNLSNNY 636 (695)
Q Consensus 576 l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~ls~N~ 636 (695)
+++|++|+|+.|.+.+. ++..+..+++|+.|++++|.++...-..+.. + ...++++.++
T Consensus 278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 45566666666655542 2233344566666666666665433333332 2 3456666665
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.75 E-value=4.2e-09 Score=106.55 Aligned_cols=164 Identities=18% Similarity=0.184 Sum_probs=111.1
Q ss_pred CCCCCCCCCEEECCCCCCC--------CCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCCCCCch
Q 036216 22 PVANFSTLTTLDLSHNQFD--------NSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVP 93 (695)
Q Consensus 22 ~~~~l~~L~~L~Ls~n~i~--------~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~p 93 (695)
+...+++|+.|.+...... ...+...+..+++|+.|+|++|.-. .++. +. +++|++|++..|.+.....
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l 210 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVV 210 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHH
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHH
Confidence 4567789999988765321 1114556678899999999988422 2333 43 8999999999988765444
Q ss_pred hhhc--CCCCCCEEEccc--CcCCcc-----cchhh--cCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccC
Q 036216 94 KWFD--RLTHLEHLSLSY--NSLEGR-----IPRSM--ARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALAS 162 (695)
Q Consensus 94 ~~~~--~l~~L~~L~Ls~--n~l~~~-----~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~ 162 (695)
..+. .+++|++|+|+. +...+. +...+ ..+++|++|++.+|.+.+.....+... ..++. |++|+|+.
T Consensus 211 ~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a-~~~~~-L~~LdLs~ 288 (362)
T 2ra8_A 211 EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES-DILPQ-LETMDISA 288 (362)
T ss_dssp HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHC-SSGGG-CSEEECCS
T ss_pred HHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhC-ccCCC-CCEEECCC
Confidence 4444 789999999864 221111 11222 357899999999999876544322211 23444 99999999
Q ss_pred cccccccc----hhcCCCCCCCEEEccCCCcC
Q 036216 163 SSISGHLT----DQLGQFKNLDSLDLSNNSIV 190 (695)
Q Consensus 163 n~~~~~~~----~~l~~l~~L~~L~L~~n~i~ 190 (695)
|.+.+..+ ..+..+++|+.|++++|.|+
T Consensus 289 n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 289 GVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp SCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 99887543 33456799999999999886
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.59 E-value=4.1e-08 Score=89.49 Aligned_cols=92 Identities=17% Similarity=0.191 Sum_probs=48.7
Q ss_pred hcCCCCCCEEEcCCC-cCccc----CCccCCCCCCCCEEeCCCCCCCCC----chhhhcCCCCCCEEEcccCcCCcc---
Q 036216 48 VFGLSRLHFLNLGYN-NFQGP----IPEGLQNLTSLKHLGLPFNHFSSS----VPKWFDRLTHLEHLSLSYNSLEGR--- 115 (695)
Q Consensus 48 ~~~l~~L~~L~Ls~n-~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~--- 115 (695)
+...+.|++|+|++| .+... +...+...++|++|+|++|.+... +...+...+.|++|+|++|.|...
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 335566666666666 55421 233445556666666666665532 223344445566666666665532
Q ss_pred -cchhhcCCCCCCEEEc--cCCcCccc
Q 036216 116 -IPRSMARLCNLRRLYL--GGAKLNQE 139 (695)
Q Consensus 116 -~~~~~~~l~~L~~L~L--~~n~l~~~ 139 (695)
+...+...++|++|++ ++|.+...
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~ 138 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNN 138 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHH
Confidence 2344555555666666 55555443
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.56 E-value=5.7e-08 Score=88.55 Aligned_cols=121 Identities=11% Similarity=0.049 Sum_probs=77.9
Q ss_pred CCccCCCCCCCCEEeCCCC-CCCCC----chhhhcCCCCCCEEEcccCcCCcc----cchhhcCCCCCCEEEccCCcCcc
Q 036216 68 IPEGLQNLTSLKHLGLPFN-HFSSS----VPKWFDRLTHLEHLSLSYNSLEGR----IPRSMARLCNLRRLYLGGAKLNQ 138 (695)
Q Consensus 68 ~~~~~~~l~~L~~L~L~~n-~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~ 138 (695)
+...+...++|++|+|++| .+... +...+...++|++|+|++|.+... +...+...++|++|+|++|.+..
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 3455677888888888888 77642 345566678888888888887642 34555666788888888888876
Q ss_pred ccchhhhhhhcccccccceEEc--cCccccccc----chhcCCCCCCCEEEccCCCc
Q 036216 139 EISEILEIFSGCVSNGLESLAL--ASSSISGHL----TDQLGQFKNLDSLDLSNNSI 189 (695)
Q Consensus 139 ~~~~~~~~~~~~~~~~L~~L~L--~~n~~~~~~----~~~l~~l~~L~~L~L~~n~i 189 (695)
.....+...+..... |++|+| ++|.+.... ...+...+.|++|++++|.+
T Consensus 108 ~g~~~l~~~L~~n~~-L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 108 SGILALVEALQSNTS-LIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHHGGGGCSS-CCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHHHhCCC-ceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 554444444444444 666666 556665432 23334445666666666655
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.26 E-value=5.5e-07 Score=86.07 Aligned_cols=67 Identities=24% Similarity=0.335 Sum_probs=39.6
Q ss_pred CCCCCCEEeccCCcccc--cCCccccCcCCCCEEECCCCcccccCCcCCcCCC--CCCEEEcccCcCcccCCC
Q 036216 575 NLKAVQSLNLSYNIFTG--RIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLT--FLNHLNLSNNYLTGKIPS 643 (695)
Q Consensus 575 ~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~--~L~~L~ls~N~l~~~iP~ 643 (695)
++++|++|+|++|++++ .+|..++.+++|+.|+|++|++++. ..+..+. +|++|+|++|++++.+|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRD 238 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCc
Confidence 45566666666666664 3345555666666666666666643 2233333 667777777777666663
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.25 E-value=2.6e-07 Score=88.36 Aligned_cols=81 Identities=16% Similarity=0.167 Sum_probs=66.6
Q ss_pred hhcccccEEEcCCccccc--cCCccccCCCCCCEEeccCCcccccCCccccCcC--CCCEEECCCCcccccCCc------
Q 036216 550 EILNLVRIIDFSKNLFSG--TLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMR--SLESIDFSVNKFTGEIPQ------ 619 (695)
Q Consensus 550 ~~~~~l~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~--~L~~L~Ls~n~l~~~~p~------ 619 (695)
..++.|+.|+|++|+|++ .+|..+..+++|+.|+|++|++.+. +.+..+. +|+.|+|++|.+.+..|+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 457889999999999997 4567778999999999999999854 3455555 999999999999987763
Q ss_pred -CCcCCCCCCEEEc
Q 036216 620 -SMSSLTFLNHLNL 632 (695)
Q Consensus 620 -~l~~l~~L~~L~l 632 (695)
.+..+++|+.||=
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 3667888888863
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.16 E-value=1.1e-06 Score=77.67 Aligned_cols=86 Identities=9% Similarity=0.126 Sum_probs=61.6
Q ss_pred CCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCC-CCCCchhhhcCC----CCCCEEEcccCc-CCcccchhhcCC
Q 036216 50 GLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNH-FSSSVPKWFDRL----THLEHLSLSYNS-LEGRIPRSMARL 123 (695)
Q Consensus 50 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l----~~L~~L~Ls~n~-l~~~~~~~~~~l 123 (695)
.-.+|++||+++|.|+..--..+.++++|++|+|++|. +++.--..+..+ ++|++|++++|. ++..--..+.++
T Consensus 59 ~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 59 DKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF 138 (176)
T ss_dssp TCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred CCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence 34568888888888776555667788888888888885 654333445554 368888888874 775555567788
Q ss_pred CCCCEEEccCCc
Q 036216 124 CNLRRLYLGGAK 135 (695)
Q Consensus 124 ~~L~~L~L~~n~ 135 (695)
++|++|+++++.
T Consensus 139 ~~L~~L~L~~c~ 150 (176)
T 3e4g_A 139 RNLKYLFLSDLP 150 (176)
T ss_dssp TTCCEEEEESCT
T ss_pred CCCCEEECCCCC
Confidence 888888888875
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.04 E-value=8.8e-07 Score=78.21 Aligned_cols=83 Identities=14% Similarity=0.097 Sum_probs=68.2
Q ss_pred cccEEEcCCccccccCCccccCCCCCCEEeccCCc-ccccCCccccCc----CCCCEEECCCCc-ccccCCcCCcCCCCC
Q 036216 554 LVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNI-FTGRIPETIGTM----RSLESIDFSVNK-FTGEIPQSMSSLTFL 627 (695)
Q Consensus 554 ~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l----~~L~~L~Ls~n~-l~~~~p~~l~~l~~L 627 (695)
.|+.||++++.++..--..+.++++|++|+|++|. ++...-..++.+ ++|+.|+|++|. ++..--..++.+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 47999999999987766778899999999999995 765444445554 479999999985 876655677889999
Q ss_pred CEEEcccCc
Q 036216 628 NHLNLSNNY 636 (695)
Q Consensus 628 ~~L~ls~N~ 636 (695)
++|++++|+
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 999999996
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.55 E-value=9.4e-05 Score=66.58 Aligned_cols=84 Identities=15% Similarity=0.131 Sum_probs=39.9
Q ss_pred CCCCCCEEEcCCC-cCcc----cCCccCCCCCCCCEEeCCCCCCCCC----chhhhcCCCCCCEEEcccCcCCcc----c
Q 036216 50 GLSRLHFLNLGYN-NFQG----PIPEGLQNLTSLKHLGLPFNHFSSS----VPKWFDRLTHLEHLSLSYNSLEGR----I 116 (695)
Q Consensus 50 ~l~~L~~L~Ls~n-~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~ 116 (695)
.-+.|++|+|++| .|.. .+.+++..-+.|++|+|++|.+... +.+.+..-+.|++|+|+.|.|... +
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3445666666553 4432 1233444555566666666655432 222333345555555555555431 2
Q ss_pred chhhcCCCCCCEEEccC
Q 036216 117 PRSMARLCNLRRLYLGG 133 (695)
Q Consensus 117 ~~~~~~l~~L~~L~L~~ 133 (695)
.+++..-+.|++|+|++
T Consensus 119 a~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHTTTTCCCSEEECCC
T ss_pred HHHHhhCCceeEEECCC
Confidence 23333444455555543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.48 E-value=0.00014 Score=65.52 Aligned_cols=119 Identities=14% Similarity=0.115 Sum_probs=75.9
Q ss_pred ccCCCCCCCCEEeCCCC-CCCCC----chhhhcCCCCCCEEEcccCcCCc----ccchhhcCCCCCCEEEccCCcCcccc
Q 036216 70 EGLQNLTSLKHLGLPFN-HFSSS----VPKWFDRLTHLEHLSLSYNSLEG----RIPRSMARLCNLRRLYLGGAKLNQEI 140 (695)
Q Consensus 70 ~~~~~l~~L~~L~L~~n-~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~ 140 (695)
..+.+-+.|++|+|++| .+... +.+++..-+.|+.|+|++|.+.. .+.+.+..-+.|++|+|++|.|....
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 34456678888888875 66532 34556667788888888888774 33455556678888888888887666
Q ss_pred chhhhhhhcccccccceEEccCc---ccccc----cchhcCCCCCCCEEEccCCCc
Q 036216 141 SEILEIFSGCVSNGLESLALASS---SISGH----LTDQLGQFKNLDSLDLSNNSI 189 (695)
Q Consensus 141 ~~~~~~~~~~~~~~L~~L~L~~n---~~~~~----~~~~l~~l~~L~~L~L~~n~i 189 (695)
...+...+..... |++|+|+++ .+... +...+..-+.|++|+++.|.+
T Consensus 115 a~ala~aL~~N~t-L~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 115 LARLLRSTLVTQS-IVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHTTTTCC-CSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHhhCCc-eeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 5555545544444 777777654 22221 233445556677777766543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.81 E-value=0.0018 Score=54.34 Aligned_cols=56 Identities=18% Similarity=0.342 Sum_probs=30.1
Q ss_pred cEEEcCCcccc-ccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcc
Q 036216 556 RIIDFSKNLFS-GTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKF 613 (695)
Q Consensus 556 ~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l 613 (695)
..++.+++.++ ..+|..+. ++|++|+|++|+|+...++.|..+++|+.|+|++|.+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 45666666664 24443322 2456666666666544444555555566655555544
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.70 E-value=0.0027 Score=53.23 Aligned_cols=57 Identities=16% Similarity=0.178 Sum_probs=47.2
Q ss_pred CEEeccCCccc-ccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccCcCc
Q 036216 580 QSLNLSYNIFT-GRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLT 638 (695)
Q Consensus 580 ~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~ 638 (695)
..++.+++.++ ..+|..+. ++|+.|+|++|+|+...+..|..+++|++|+|++|++.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47889999886 35665433 57999999999999766778899999999999999886
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=69.85 E-value=10 Score=29.37 Aligned_cols=49 Identities=12% Similarity=0.030 Sum_probs=29.5
Q ss_pred CCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCC
Q 036216 12 NCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYN 62 (695)
Q Consensus 12 ~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n 62 (695)
+..++.|...+|.++..|+.+.+..+ ++.+ -..+|.+|.+|+.+.+...
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~I-g~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLL-YDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCC-CTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheE-cHHHHhccCCccEEEEcCC
Confidence 34566777777777777777776654 2222 3345556666666666543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=66.01 E-value=11 Score=29.09 Aligned_cols=45 Identities=20% Similarity=0.121 Sum_probs=28.0
Q ss_pred CcccCCccCCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEEccc
Q 036216 64 FQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSY 109 (695)
Q Consensus 64 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 109 (695)
++.+...+|.++.+|+.+.+..+ ++.+...+|.+|.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 44455566666777777776654 4445556677777777766655
Done!