BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036217
         (196 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3LS9|A Chain A, Crystal Structure Of Atrazine Chlorohydrolase Trzn From
           Arthrobacter Aurescens Tc1 Complexed With Zinc
 pdb|3LS9|B Chain B, Crystal Structure Of Atrazine Chlorohydrolase Trzn From
           Arthrobacter Aurescens Tc1 Complexed With Zinc
          Length = 456

 Score = 29.3 bits (64), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 16/64 (25%), Positives = 31/64 (48%)

Query: 86  GTVGESFMDGGEGKSYRLRSYVMYLDAETLQRYATIRSKEAISLIEKQTQALFGRPDIRV 145
           GT G +  DGG        + + +  A+  +    + ++E + +  + +    GRPD+ V
Sbjct: 323 GTTGSASNDGGNLLGDLRLAALAHRPADPNEPEKWLSARELLRMATRGSAECLGRPDLGV 382

Query: 146 LEDG 149
           LE+G
Sbjct: 383 LEEG 386


>pdb|3LSB|A Chain A, Crystal Structure Of The Mutant E241q Of Atrazine
           Chlorohydrolase Trzn From Arthrobacter Aurescens Tc1
           Complexed With Zinc And Ametrin
 pdb|3LSB|B Chain B, Crystal Structure Of The Mutant E241q Of Atrazine
           Chlorohydrolase Trzn From Arthrobacter Aurescens Tc1
           Complexed With Zinc And Ametrin
 pdb|3LSC|A Chain A, Crystal Structure Of The Mutant E241q Of Atrazine
           Chlorohydrolase Trzn From Arthrobacter Aurescens Tc1
           Complexed With Zinc And Atraton
 pdb|3LSC|B Chain B, Crystal Structure Of The Mutant E241q Of Atrazine
           Chlorohydrolase Trzn From Arthrobacter Aurescens Tc1
           Complexed With Zinc And Atraton
          Length = 456

 Score = 29.3 bits (64), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 16/64 (25%), Positives = 31/64 (48%)

Query: 86  GTVGESFMDGGEGKSYRLRSYVMYLDAETLQRYATIRSKEAISLIEKQTQALFGRPDIRV 145
           GT G +  DGG        + + +  A+  +    + ++E + +  + +    GRPD+ V
Sbjct: 323 GTTGSASNDGGNLLGDLRLAALAHRPADPNEPEKWLSARELLRMATRGSAECLGRPDLGV 382

Query: 146 LEDG 149
           LE+G
Sbjct: 383 LEEG 386


>pdb|3RH9|A Chain A, The Crystal Structure Of Oxidoreductase From Marinobacter
           Aquaeolei
 pdb|3RH9|B Chain B, The Crystal Structure Of Oxidoreductase From Marinobacter
           Aquaeolei
          Length = 506

 Score = 27.3 bits (59), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 15/31 (48%)

Query: 90  ESFMDGGEGKSYRLRSYVMYLDAETLQRYAT 120
           E  +D G    + L SYV   DAE  QR A 
Sbjct: 403 EEVIDAGNDTEFGLASYVFTADAERAQRVAA 433


>pdb|1VAV|A Chain A, Crystal Structure Of Alginate Lyase Pa1167 From
           Pseudomonas Aeruginosa At 2.0 A Resolution
 pdb|1VAV|B Chain B, Crystal Structure Of Alginate Lyase Pa1167 From
           Pseudomonas Aeruginosa At 2.0 A Resolution
          Length = 222

 Score = 26.9 bits (58), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 11/93 (11%)

Query: 14  RVDFWPNQEQKLESVHSPEAFEMIQSHLSLVLGERLVGPLDTIIQISKIKLGKLYAASIM 73
           R D W     ++E+V S     + Q H S         PL  ++   ++  G++ A    
Sbjct: 77  RADNWLEATLRIEAVPSTRRMIIGQIH-SDGSNSGQAAPLVKLLYQLRLDQGRVQA---- 131

Query: 74  YDSLIRIPPNDDGTVGESFMDG---GEGKSYRL 103
              L+R  P+D GT   + MDG   G+  SYR+
Sbjct: 132 ---LVRERPDDGGTRAYTLMDGIPLGQPFSYRI 161


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.136    0.382 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,485,026
Number of Sequences: 62578
Number of extensions: 203990
Number of successful extensions: 631
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 630
Number of HSP's gapped (non-prelim): 5
length of query: 196
length of database: 14,973,337
effective HSP length: 94
effective length of query: 102
effective length of database: 9,091,005
effective search space: 927282510
effective search space used: 927282510
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)