BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036217
         (196 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q22329|PORCN_CAEEL Probable protein-cysteine N-palmitoyltransferase porcupine
           OS=Caenorhabditis elegans GN=mom-1 PE=2 SV=2
          Length = 442

 Score = 31.6 bits (70), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 22/38 (57%)

Query: 139 GRPDIRVLEDGSIDTSKDEVISVTFLGLTMLVLEAVAF 176
           G  +  +LEDGS+     +V + TFL ++ L+   VAF
Sbjct: 6   GYEEFELLEDGSLGECSTQVANATFLTISKLICLVVAF 43


>sp|Q8FTM1|SYY_COREF Tyrosine--tRNA ligase OS=Corynebacterium efficiens (strain DSM
           44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395)
           GN=tyrS PE=3 SV=1
          Length = 421

 Score = 31.2 bits (69), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 24/38 (63%)

Query: 121 IRSKEAISLIEKQTQALFGRPDIRVLEDGSIDTSKDEV 158
           +  +EA + +E   QALFGR ++R L++ +++ S  E 
Sbjct: 306 VHGEEATAAVELAAQALFGRAELRDLDEKTLEASVSET 343


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.136    0.382 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,145,047
Number of Sequences: 539616
Number of extensions: 2615205
Number of successful extensions: 6225
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6223
Number of HSP's gapped (non-prelim): 3
length of query: 196
length of database: 191,569,459
effective HSP length: 111
effective length of query: 85
effective length of database: 131,672,083
effective search space: 11192127055
effective search space used: 11192127055
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)