Query 036217
Match_columns 196
No_of_seqs 54 out of 56
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 10:35:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036217.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036217hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05542 DUF760: Protein of un 99.1 1.8E-11 3.9E-16 91.3 1.8 55 21-75 14-69 (86)
2 PF05542 DUF760: Protein of un 97.5 0.00024 5.2E-09 53.1 5.7 76 102-185 2-77 (86)
3 PF14875 PIP49_N: N-term cyste 61.6 16 0.00034 30.5 4.6 48 10-59 107-155 (158)
4 PF08763 Ca_chan_IQ: Voltage g 45.4 9.5 0.00021 25.1 0.6 14 61-74 3-16 (35)
5 PRK12853 glucose-6-phosphate 1 40.3 14 0.00031 35.7 1.3 21 33-53 230-250 (482)
6 COG0364 Zwf Glucose-6-phosphat 37.2 19 0.00041 35.3 1.5 21 33-53 230-250 (483)
7 PRK12854 glucose-6-phosphate 1 35.2 19 0.00041 35.0 1.2 20 34-53 239-258 (484)
8 PRK05722 glucose-6-phosphate 1 34.9 21 0.00045 34.7 1.4 21 33-53 240-260 (495)
9 PLN02539 glucose-6-phosphate 1 34.0 21 0.00045 34.8 1.3 21 33-53 250-270 (491)
10 PF02781 G6PD_C: Glucose-6-pho 33.5 9 0.00019 34.8 -1.2 20 34-53 46-65 (293)
11 TIGR00871 zwf glucose-6-phosph 33.3 22 0.00047 34.5 1.3 21 33-53 231-251 (482)
12 PF12835 Integrase_1: Integras 32.1 93 0.002 26.1 4.7 60 115-176 39-103 (187)
13 PTZ00309 glucose-6-phosphate 1 31.0 26 0.00057 34.6 1.4 21 33-53 286-306 (542)
14 PLN02640 glucose-6-phosphate 1 30.5 26 0.00057 34.9 1.3 21 33-53 317-337 (573)
15 COG5664 Predicted secreted Zn- 29.2 33 0.00072 30.2 1.6 47 25-71 124-172 (201)
16 PF12931 Sec16_C: Sec23-bindin 27.5 38 0.00082 29.8 1.7 38 37-74 100-139 (284)
17 PF12476 DUF3696: Protein of u 25.6 36 0.00077 22.9 0.9 12 9-20 27-38 (52)
18 PF11226 DUF3022: Protein of u 25.0 40 0.00087 27.1 1.3 42 99-140 44-89 (111)
19 PLN02333 glucose-6-phosphate 1 24.9 38 0.00083 34.1 1.4 21 33-53 346-366 (604)
20 cd08571 GDPD_SHV3_plant Glycer 24.1 37 0.00079 30.3 1.0 19 104-122 170-188 (302)
21 PF04071 zf-like: Cysteine-ric 23.5 77 0.0017 24.4 2.5 23 26-48 58-80 (86)
22 PF08353 DUF1727: Domain of un 22.8 29 0.00063 27.2 0.1 7 178-184 39-45 (113)
23 PF10678 DUF2492: Protein of u 21.3 44 0.00095 25.3 0.8 14 25-38 1-14 (78)
24 COG3750 Uncharacterized protei 20.4 1.3E+02 0.0028 23.4 3.2 27 108-134 47-73 (85)
No 1
>PF05542 DUF760: Protein of unknown function (DUF760); InterPro: IPR008479 This entry contains uncharacterised proteins.
Probab=99.13 E-value=1.8e-11 Score=91.29 Aligned_cols=55 Identities=33% Similarity=0.422 Sum_probs=49.6
Q ss_pred ccccccccCCHHHHHHHHHHHHHHhccc-ccCCchhhhhhhccccccchhhhHhhH
Q 036217 21 QEQKLESVHSPEAFEMIQSHLSLVLGER-LVGPLDTIIQISKIKLGKLYAASIMYD 75 (196)
Q Consensus 21 ~~~kLEsiHS~EalEMI~eHL~~ilG~r-~~~~~~t~~qiskl~~gqvYAASIMYe 75 (196)
.-..++.+|||||+|+|++|+..+||.. ...+.++++++++.++||+||+++||.
T Consensus 14 ~~~~l~~~~s~ev~e~m~~~v~~llG~l~p~~~~~~~i~~s~~~La~L~~~~mm~G 69 (86)
T PF05542_consen 14 RIQQLSEPASPEVLEAMKQHVSGLLGNLSPSDQFNVTIQTSRENLAQLLAWSMMTG 69 (86)
T ss_pred HHHHhhccCCHHHHHHHHHHHHHHHcCCCCcccCcceeEECHHHHHHHHHHHHHHh
Confidence 3345889999999999999999999999 556779999999999999999999993
No 2
>PF05542 DUF760: Protein of unknown function (DUF760); InterPro: IPR008479 This entry contains uncharacterised proteins.
Probab=97.52 E-value=0.00024 Score=53.09 Aligned_cols=76 Identities=20% Similarity=0.295 Sum_probs=67.6
Q ss_pred hhhhhhhccCHHHHHHHHhhhhHHHHHHHHHhhhhhcCCCceeecCCCCcccCCCceEEEechhhHHHHHHHHhhccccc
Q 036217 102 RLRSYVMYLDAETLQRYATIRSKEAISLIEKQTQALFGRPDIRVLEDGSIDTSKDEVISVTFLGLTMLVLEAVAFGSFMW 181 (196)
Q Consensus 102 ~Lr~YVm~FD~eTLqr~A~iRSkEav~lIEkht~ALFG~p~i~i~~~Gsv~~~~de~i~isfs~LkrLVLEAVaFGSFLW 181 (196)
.|=.||.+.+||++++.++.-|.|++..|++|...+-|.-. .....+-+|.++=..|-+|..=++.+|=|||
T Consensus 2 ~L~~yi~~l~pe~~~~l~~~~s~ev~e~m~~~v~~llG~l~--------p~~~~~~~i~~s~~~La~L~~~~mm~GYfLr 73 (86)
T PF05542_consen 2 DLLQYIQSLKPERIQQLSEPASPEVLEAMKQHVSGLLGNLS--------PSDQFNVTIQTSRENLAQLLAWSMMTGYFLR 73 (86)
T ss_pred hHHHHHHHCCHHHHHHhhccCCHHHHHHHHHHHHHHHcCCC--------CcccCcceeEECHHHHHHHHHHHHHHhHHHH
Confidence 57789999999999999999999999999999999999552 1235667899999999999999999999999
Q ss_pred cccc
Q 036217 182 DSES 185 (196)
Q Consensus 182 DvEs 185 (196)
.+|-
T Consensus 74 ~~E~ 77 (86)
T PF05542_consen 74 NAEQ 77 (86)
T ss_pred HHHH
Confidence 9873
No 3
>PF14875 PIP49_N: N-term cysteine-rich ER, FAM69
Probab=61.64 E-value=16 Score=30.54 Aligned_cols=48 Identities=27% Similarity=0.259 Sum_probs=34.0
Q ss_pred CCCCccccCCCccccccccCC-HHHHHHHHHHHHHHhcccccCCchhhhhh
Q 036217 10 DPVGRVDFWPNQEQKLESVHS-PEAFEMIQSHLSLVLGERLVGPLDTIIQI 59 (196)
Q Consensus 10 ~~~grvd~wP~~~~kLEsiHS-~EalEMI~eHL~~ilG~r~~~~~~t~~qi 59 (196)
.++-.-+.||.++..++-.=| .|-.|||++|+-..+|... +.+.+.+|
T Consensus 107 ~~~~~~~~~~~~e~~~~~~Ps~~ef~eMV~~~lk~~lG~~~--~~~lv~~l 155 (158)
T PF14875_consen 107 SYDFEPLSWPRSELVLFDKPSMEEFREMVKSFLKNKLGDQL--SNNLVERL 155 (158)
T ss_pred ccccccccccccccccCCCCCHHHHHHHHHHHHHHHhCCCC--CHHHHHHH
Confidence 446666799988755544444 3578999999999999984 35555554
No 4
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=45.41 E-value=9.5 Score=25.15 Aligned_cols=14 Identities=29% Similarity=0.721 Sum_probs=11.9
Q ss_pred ccccccchhhhHhh
Q 036217 61 KIKLGKLYAASIMY 74 (196)
Q Consensus 61 kl~~gqvYAASIMY 74 (196)
.+.+|++|||=++|
T Consensus 3 ~~TVGK~YAt~lI~ 16 (35)
T PF08763_consen 3 EVTVGKFYATLLIQ 16 (35)
T ss_dssp -CCCHHHHHHHHHH
T ss_pred cchhHHHHHHHHHH
Confidence 47799999999988
No 5
>PRK12853 glucose-6-phosphate 1-dehydrogenase; Provisional
Probab=40.31 E-value=14 Score=35.72 Aligned_cols=21 Identities=29% Similarity=0.351 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHhcccccCCc
Q 036217 33 AFEMIQSHLSLVLGERLVGPL 53 (196)
Q Consensus 33 alEMI~eHL~~ilG~r~~~~~ 53 (196)
.-+||||||..||..-++-++
T Consensus 230 lRDmvQNHLlQlLalvAME~P 250 (482)
T PRK12853 230 LRDMVQNHLLQLLALVAMEPP 250 (482)
T ss_pred HHHHHHHHHHHHHHHHhhCCC
Confidence 458999999999999865544
No 6
>COG0364 Zwf Glucose-6-phosphate 1-dehydrogenase [Carbohydrate transport and metabolism]
Probab=37.18 E-value=19 Score=35.35 Aligned_cols=21 Identities=29% Similarity=0.311 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHhcccccCCc
Q 036217 33 AFEMIQSHLSLVLGERLVGPL 53 (196)
Q Consensus 33 alEMI~eHL~~ilG~r~~~~~ 53 (196)
.=+||||||..+|..-++-++
T Consensus 230 lRDMvQNHlLQlL~LvAME~P 250 (483)
T COG0364 230 LRDMVQNHLLQLLCLVAMEPP 250 (483)
T ss_pred HHHHHHHHHHHHHHHHhcCCC
Confidence 348999999999999865444
No 7
>PRK12854 glucose-6-phosphate 1-dehydrogenase; Provisional
Probab=35.22 E-value=19 Score=35.01 Aligned_cols=20 Identities=30% Similarity=0.325 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhcccccCCc
Q 036217 34 FEMIQSHLSLVLGERLVGPL 53 (196)
Q Consensus 34 lEMI~eHL~~ilG~r~~~~~ 53 (196)
-+||||||..+|..-++-++
T Consensus 239 RDmvQNHLlQlLalvAMEpP 258 (484)
T PRK12854 239 RDMVVTHLFQVLAFVAMEPP 258 (484)
T ss_pred HHHHHHHHHHHHHHHHhCCC
Confidence 48999999999998875544
No 8
>PRK05722 glucose-6-phosphate 1-dehydrogenase; Validated
Probab=34.86 E-value=21 Score=34.70 Aligned_cols=21 Identities=29% Similarity=0.351 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHhcccccCCc
Q 036217 33 AFEMIQSHLSLVLGERLVGPL 53 (196)
Q Consensus 33 alEMI~eHL~~ilG~r~~~~~ 53 (196)
.-+||||||..+|..-++-++
T Consensus 240 lRDmvQNHLlQlLalvAME~P 260 (495)
T PRK05722 240 LRDMVQNHLLQLLALVAMEPP 260 (495)
T ss_pred HHHHHHHHHHHHHHHHhcCCC
Confidence 358999999999998865544
No 9
>PLN02539 glucose-6-phosphate 1-dehydrogenase
Probab=33.96 E-value=21 Score=34.81 Aligned_cols=21 Identities=29% Similarity=0.199 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHhcccccCCc
Q 036217 33 AFEMIQSHLSLVLGERLVGPL 53 (196)
Q Consensus 33 alEMI~eHL~~ilG~r~~~~~ 53 (196)
.-+||||||..+|..-++-++
T Consensus 250 lRDmvQNHLlQlLalvAMEpP 270 (491)
T PLN02539 250 IRDIIQNHLLQVLCLVAMEKP 270 (491)
T ss_pred HHHHHHHHHHHHHHHHHhCCc
Confidence 348999999999998865544
No 10
>PF02781 G6PD_C: Glucose-6-phosphate dehydrogenase, C-terminal domain; InterPro: IPR022675 Glucose-6-phosphate dehydrogenase (1.1.1.49 from EC) (G6PDH) is a ubiquitous protein, present in bacteria and all eukaryotic cell types []. The enzyme catalyses the the first step in the pentose pathway, i.e. the conversion of glucose-6-phosphate to gluconolactone 6-phosphate in the presence of NADP, producing NADPH. The ubiquitous expression of the enzyme gives it a major role in the production of NADPH for the many NADPH-mediated reductive processes in all cells []. Deficiency of G6PDH is a common genetic abnormality affecting millions of people worldwide. Many sequence variants, most caused by single point mutations, are known, exhibiting a wide variety of phenotypes []. This entry represents the C-terminal domain of glucose-6-phosphate dehydrogenase.; GO: 0004345 glucose-6-phosphate dehydrogenase activity, 0050661 NADP binding, 0006006 glucose metabolic process, 0055114 oxidation-reduction process; PDB: 1QKI_E 2BH9_A 2BHL_A 4EM5_C 4E9I_A 2DPG_A 1E77_A 1E7M_A 1H9B_A 1E7Y_A ....
Probab=33.46 E-value=9 Score=34.76 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhcccccCCc
Q 036217 34 FEMIQSHLSLVLGERLVGPL 53 (196)
Q Consensus 34 lEMI~eHL~~ilG~r~~~~~ 53 (196)
-+||||||..||..-+.-++
T Consensus 46 RDmvQNHllQlL~lvaMe~P 65 (293)
T PF02781_consen 46 RDMVQNHLLQLLALVAMEPP 65 (293)
T ss_dssp HHTTTTHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHhcCc
Confidence 48999999999998865443
No 11
>TIGR00871 zwf glucose-6-phosphate 1-dehydrogenase. This is a well-studied enzyme family, with sequences available from well over 50 species. The trusted cutoff is set above the score for the Drosophila melanogaster CG7140 gene product, a homolog of unknown function. G6PD homologs from the bacteria Aquifex aeolicus and Helicobacter pylori lack several motifs well conserved most other members, were omitted from the seed alignment, and score well below the trusted cutoff.
Probab=33.28 E-value=22 Score=34.46 Aligned_cols=21 Identities=29% Similarity=0.311 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHhcccccCCc
Q 036217 33 AFEMIQSHLSLVLGERLVGPL 53 (196)
Q Consensus 33 alEMI~eHL~~ilG~r~~~~~ 53 (196)
.-+||||||..+|..-++-++
T Consensus 231 lRDmvQNHLlQlL~lvAMe~P 251 (482)
T TIGR00871 231 LRDMVQNHLLQLLCLVAMEPP 251 (482)
T ss_pred HHHHHHhHHHHHHHHHHcCCC
Confidence 358999999999998865544
No 12
>PF12835 Integrase_1: Integrase; InterPro: IPR024456 Phage integrase proteins cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment [, ]. This entry represents the catalytic domain from a family of putative prophage DNA-binding integrases.
Probab=32.10 E-value=93 Score=26.08 Aligned_cols=60 Identities=22% Similarity=0.168 Sum_probs=35.4
Q ss_pred HHHHHhhhhHHHHHHHHHhh---hhhcC-CCceeecCCCCcccCCCceEEEe-chhhHHHHHHHHhh
Q 036217 115 LQRYATIRSKEAISLIEKQT---QALFG-RPDIRVLEDGSIDTSKDEVISVT-FLGLTMLVLEAVAF 176 (196)
Q Consensus 115 Lqr~A~iRSkEav~lIEkht---~ALFG-~p~i~i~~~Gsv~~~~de~i~is-fs~LkrLVLEAVaF 176 (196)
||+..=||.+||+.+-=.+. .||.. ...+.|...+.- ...-.|.|+ -..++.++-+|-+|
T Consensus 39 Lq~~fGLR~~Ea~~l~~~~~~w~~~l~~~~~~~~v~~gtKG--Gr~R~v~I~~~~~~~~~L~~a~~~ 103 (187)
T PF12835_consen 39 LQRAFGLRREEALKLRPSLATWEKALERGDETLRVVVGTKG--GRPREVPILDSEKQREALERAAAV 103 (187)
T ss_pred HHHHhCCCHHHHHhccHhhhhHHHHHhcCCCceEEeecCCC--CCcceecCCCcHHHHHHHHHHHHH
Confidence 89999999999999855554 44664 333333322111 223445554 55666666666543
No 13
>PTZ00309 glucose-6-phosphate 1-dehydrogenase; Provisional
Probab=31.02 E-value=26 Score=34.63 Aligned_cols=21 Identities=19% Similarity=0.192 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHhcccccCCc
Q 036217 33 AFEMIQSHLSLVLGERLVGPL 53 (196)
Q Consensus 33 alEMI~eHL~~ilG~r~~~~~ 53 (196)
.-+||||||..||..-++-++
T Consensus 286 lRDmvQNHLlQlLalvAMEpP 306 (542)
T PTZ00309 286 IRDVMQNHLLQILALLAMEKP 306 (542)
T ss_pred HHHHHHHHHHHHHHHHhcCCC
Confidence 358999999999998875544
No 14
>PLN02640 glucose-6-phosphate 1-dehydrogenase
Probab=30.48 E-value=26 Score=34.92 Aligned_cols=21 Identities=19% Similarity=0.202 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHhcccccCCc
Q 036217 33 AFEMIQSHLSLVLGERLVGPL 53 (196)
Q Consensus 33 alEMI~eHL~~ilG~r~~~~~ 53 (196)
.-+||||||..+|..-++-++
T Consensus 317 lRDMvQNHLlQlLaLvAMEpP 337 (573)
T PLN02640 317 IRDIMQNHLLQILALFAMETP 337 (573)
T ss_pred HHHHHHHHHHHHHHHHHcCCC
Confidence 358999999999999875544
No 15
>COG5664 Predicted secreted Zn-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=29.24 E-value=33 Score=30.16 Aligned_cols=47 Identities=26% Similarity=0.265 Sum_probs=35.2
Q ss_pred ccccCCHHHHHHHHHHHHHHhcccccCCc--hhhhhhhccccccchhhh
Q 036217 25 LESVHSPEAFEMIQSHLSLVLGERLVGPL--DTIIQISKIKLGKLYAAS 71 (196)
Q Consensus 25 LEsiHS~EalEMI~eHL~~ilG~r~~~~~--~t~~qiskl~~gqvYAAS 71 (196)
-|-+|+--+.||+++--..+.|.+..+++ .-+-+.-..++|-+|++-
T Consensus 124 HE~vHG~~~~~Mv~~iea~t~GL~vanDPkC~K~R~e~~~rl~~is~~q 172 (201)
T COG5664 124 HELVHGDHAKEMVRAIEAATTGLRVANDPKCRKIRRELQKRLGAISAEQ 172 (201)
T ss_pred HHHHhHHHHHHHHHHHHHHhcccccCCChhHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999999953444 223333346788888764
No 16
>PF12931 Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_C.
Probab=27.55 E-value=38 Score=29.85 Aligned_cols=38 Identities=21% Similarity=0.364 Sum_probs=24.2
Q ss_pred HHHHHHHHhcccccCCchhhhhhhcc--ccccchhhhHhh
Q 036217 37 IQSHLSLVLGERLVGPLDTIIQISKI--KLGKLYAASIMY 74 (196)
Q Consensus 37 I~eHL~~ilG~r~~~~~~t~~qiskl--~~gqvYAASIMY 74 (196)
=||||+.|+-++..++..++..+-++ +-|+++||.|.|
T Consensus 100 Wre~lA~il~N~~~~~~~~l~~LGd~L~~~g~~~aA~iCY 139 (284)
T PF12931_consen 100 WRETLAIILSNRTPEDSQALCALGDRLWQRGRVEAAHICY 139 (284)
T ss_dssp HHHHHHHHHHTS---SS-TT--HHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHhCCCcccHHHHHHHHHHHHhCCCcchhHHHH
Confidence 68999999999965555555443332 447899999999
No 17
>PF12476 DUF3696: Protein of unknown function (DUF3696); InterPro: IPR022532 This domain is found in bacteria and archaea, and is approximately 50 amino acids in length.
Probab=25.64 E-value=36 Score=22.92 Aligned_cols=12 Identities=42% Similarity=0.908 Sum_probs=10.2
Q ss_pred CCCCCccccCCC
Q 036217 9 SDPVGRVDFWPN 20 (196)
Q Consensus 9 ~~~~grvd~wP~ 20 (196)
.+.+|+++.||.
T Consensus 27 id~~G~l~~WP~ 38 (52)
T PF12476_consen 27 IDEDGRLSNWPE 38 (52)
T ss_pred ECCCCCCccCCC
Confidence 467999999995
No 18
>PF11226 DUF3022: Protein of unknown function (DUF3022); InterPro: IPR021389 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=25.03 E-value=40 Score=27.09 Aligned_cols=42 Identities=19% Similarity=0.308 Sum_probs=26.0
Q ss_pred ccchhhhhh-hccCHHHHHHHHhhhhHHHHH---HHHHhhhhhcCC
Q 036217 99 KSYRLRSYV-MYLDAETLQRYATIRSKEAIS---LIEKQTQALFGR 140 (196)
Q Consensus 99 k~~~Lr~YV-m~FD~eTLqr~A~iRSkEav~---lIEkht~ALFG~ 140 (196)
.|..-||=| ..|||.+|+|||-|....=.- ..=-..++-||+
T Consensus 44 ~~~~~R~~v~lrf~~~~l~RYaald~~~R~Rv~a~L~a~v~~~l~~ 89 (111)
T PF11226_consen 44 TPRDARCAVDLRFDPDVLARYAALDTAARARVHARLRAYVRATLDS 89 (111)
T ss_pred CcccceEEEEEEECHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 344446544 579999999998654433221 233456777776
No 19
>PLN02333 glucose-6-phosphate 1-dehydrogenase
Probab=24.92 E-value=38 Score=34.06 Aligned_cols=21 Identities=19% Similarity=0.202 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHhcccccCCc
Q 036217 33 AFEMIQSHLSLVLGERLVGPL 53 (196)
Q Consensus 33 alEMI~eHL~~ilG~r~~~~~ 53 (196)
.-+||||||..||..-++-++
T Consensus 346 iRDmvQNHLLQlLaLvAME~P 366 (604)
T PLN02333 346 IRDIMQNHLLQILALFAMETP 366 (604)
T ss_pred HHHHHHHHHHHHHHHHHcCCC
Confidence 358999999999998865544
No 20
>cd08571 GDPD_SHV3_plant Glycerophosphodiester phosphodiesterase domain of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase (GDPD) domain present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserv
Probab=24.09 E-value=37 Score=30.27 Aligned_cols=19 Identities=16% Similarity=0.329 Sum_probs=16.8
Q ss_pred hhhhhccCHHHHHHHHhhh
Q 036217 104 RSYVMYLDAETLQRYATIR 122 (196)
Q Consensus 104 r~YVm~FD~eTLqr~A~iR 122 (196)
|.+|+|||+++|+++.++.
T Consensus 170 ~v~i~SF~~~~L~~~~~~~ 188 (302)
T cd08571 170 KVYISSPDSSVLKSFKKRV 188 (302)
T ss_pred CEEEeCCCHHHHHHHHhcc
Confidence 6789999999999998764
No 21
>PF04071 zf-like: Cysteine-rich small domain; InterPro: IPR007212 This is a probable metal-binding domain. It is found in a probable precorrin-3B C17-methyltransferase from Methanobacterium thermoautotrophicum, that catalyses the methylation of C-17 in precorrin-3B to form precorrin-4.
Probab=23.53 E-value=77 Score=24.38 Aligned_cols=23 Identities=26% Similarity=0.444 Sum_probs=19.9
Q ss_pred cccCCHHHHHHHHHHHHHHhccc
Q 036217 26 ESVHSPEAFEMIQSHLSLVLGER 48 (196)
Q Consensus 26 EsiHS~EalEMI~eHL~~ilG~r 48 (196)
--+|-+|+++.|.+|+..++...
T Consensus 58 ~~~H~~e~~~~i~~~~~~~~~~~ 80 (86)
T PF04071_consen 58 TLPHRPENYDYIIRKLKEIIEEL 80 (86)
T ss_pred CCccCHHHHHHHHHHHHHHHHHH
Confidence 35899999999999999988654
No 22
>PF08353 DUF1727: Domain of unknown function (DUF1727); InterPro: IPR013564 This domain of unknown function is found at the C terminus of bacterial proteins which include UDP-N-acetylmuramyl tripeptide synthase and the related Mur ligase.
Probab=22.82 E-value=29 Score=27.24 Aligned_cols=7 Identities=43% Similarity=1.374 Sum_probs=5.7
Q ss_pred ccccccc
Q 036217 178 SFMWDSE 184 (196)
Q Consensus 178 SFLWDvE 184 (196)
|||||+.
T Consensus 39 SWiWDvd 45 (113)
T PF08353_consen 39 SWIWDVD 45 (113)
T ss_pred eEEeecC
Confidence 8999973
No 23
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=21.33 E-value=44 Score=25.32 Aligned_cols=14 Identities=29% Similarity=0.615 Sum_probs=11.9
Q ss_pred ccccCCHHHHHHHH
Q 036217 25 LESVHSPEAFEMIQ 38 (196)
Q Consensus 25 LEsiHS~EalEMI~ 38 (196)
+++||..|+|+|.-
T Consensus 1 m~siHgHeVL~mmi 14 (78)
T PF10678_consen 1 MNSIHGHEVLNMMI 14 (78)
T ss_pred CCccHHHHHHHHHH
Confidence 36899999999983
No 24
>COG3750 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.38 E-value=1.3e+02 Score=23.38 Aligned_cols=27 Identities=11% Similarity=0.176 Sum_probs=23.9
Q ss_pred hccCHHHHHHHHhhhhHHHHHHHHHhh
Q 036217 108 MYLDAETLQRYATIRSKEAISLIEKQT 134 (196)
Q Consensus 108 m~FD~eTLqr~A~iRSkEav~lIEkht 134 (196)
++||.+.+..|-++|-+.+-...|..+
T Consensus 47 ~GFDvKa~r~iirlrK~D~~er~EedA 73 (85)
T COG3750 47 HGFDVKAVRTIIRLRKLDKAERQEEDA 73 (85)
T ss_pred CCccHHHHHHHHHHHhhhHHHHHHHHH
Confidence 589999999999999999998888643
Done!