Query 036217
Match_columns 196
No_of_seqs 54 out of 56
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 18:08:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036217.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036217hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dve_B Voltage-dependent N-typ 52.4 3.9 0.00013 23.9 0.5 13 63-75 1-13 (23)
2 3dvk_B Voltage-dependent R-typ 37.6 9.3 0.00032 22.3 0.5 13 63-75 2-14 (23)
3 3mzk_B Protein transport prote 36.9 38 0.0013 31.0 4.7 42 33-74 248-301 (441)
4 3g43_E Voltage-dependent L-typ 29.2 16 0.00056 26.9 0.8 17 60-76 56-72 (81)
5 1dpg_A G6PD, glucose 6-phospha 25.7 11 0.00038 35.3 -0.8 20 34-53 234-253 (485)
6 2bh9_A G6PD, glucose-6-phospha 24.8 12 0.00041 35.2 -0.8 21 33-53 230-250 (489)
7 4e9i_A Glucose-6-phosphate 1-d 21.9 15 0.0005 35.0 -0.8 20 34-53 289-308 (541)
8 2joi_A Hypothetical protein TA 15.3 26 0.0009 27.5 -0.6 29 130-169 39-67 (118)
9 2qfa_B Borealin; three-helical 13.7 1E+02 0.0036 21.3 2.2 38 99-138 3-40 (62)
10 1ydy_A Glycerophosphoryl diest 12.6 67 0.0023 27.4 1.1 18 104-121 204-221 (356)
No 1
>3dve_B Voltage-dependent N-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.35A {Oryctolagus cuniculus} PDB: 3dvj_B
Probab=52.42 E-value=3.9 Score=23.92 Aligned_cols=13 Identities=46% Similarity=1.032 Sum_probs=11.1
Q ss_pred ccccchhhhHhhH
Q 036217 63 KLGKLYAASIMYD 75 (196)
Q Consensus 63 ~~gqvYAASIMYe 75 (196)
.+|++|||=+++|
T Consensus 1 ~VGKiYAallI~d 13 (23)
T 3dve_B 1 HMGKVYAALMIFD 13 (26)
T ss_dssp CCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHH
Confidence 3799999999984
No 2
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=37.56 E-value=9.3 Score=22.31 Aligned_cols=13 Identities=46% Similarity=0.940 Sum_probs=11.0
Q ss_pred ccccchhhhHhhH
Q 036217 63 KLGKLYAASIMYD 75 (196)
Q Consensus 63 ~~gqvYAASIMYe 75 (196)
.+|++|||=+++|
T Consensus 2 ~VGKiYA~llI~d 14 (23)
T 3dvk_B 2 HMGKIYAAMMIMD 14 (26)
T ss_dssp CCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHH
Confidence 4799999998884
No 3
>3mzk_B Protein transport protein SEC16; alpha-helical-stack, beta-propeller; 2.69A {Saccharomyces cerevisiae}
Probab=36.89 E-value=38 Score=31.02 Aligned_cols=42 Identities=26% Similarity=0.177 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhcccccCCc----------hhhhhhhcc--ccccchhhhHhh
Q 036217 33 AFEMIQSHLSLVLGERLVGPL----------DTIIQISKI--KLGKLYAASIMY 74 (196)
Q Consensus 33 alEMI~eHL~~ilG~r~~~~~----------~t~~qiskl--~~gqvYAASIMY 74 (196)
.++==||||+.|+-++...+. ..++++-.. +-|+++||.|.|
T Consensus 248 ~l~~Wre~lA~IlsN~~~~~~~~~~~p~~~~~~l~~LGd~L~~~g~~~aAhiCY 301 (441)
T 3mzk_B 248 ASENWKSIVAAVLINIPENNEDPLLIPPVVLEFLIEFGIFLTKKGLTAAASTLF 301 (441)
T ss_dssp HHHSHHHHHHHHHHTSCCCSSCTTCCCHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHhHHHHHHHHHHhCCCCchhhcccccchHHHHHHHHHHHHHhCCCcchhHHhH
Confidence 455679999999999853332 255555543 348899999999
No 4
>3g43_E Voltage-dependent L-type calcium channel subunit alpha-1C; calmodulin-bound, coiled coil, acetylation, methylation, phosphoprotein, polymorphism; 2.10A {Homo sapiens} PDB: 3oxq_E
Probab=29.24 E-value=16 Score=26.88 Aligned_cols=17 Identities=24% Similarity=0.606 Sum_probs=12.3
Q ss_pred hccccccchhhhHhhHh
Q 036217 60 SKIKLGKLYAASIMYDS 76 (196)
Q Consensus 60 skl~~gqvYAASIMYe~ 76 (196)
.++-+|++|||=.++|.
T Consensus 56 ~~lTVGKiYA~llI~d~ 72 (81)
T 3g43_E 56 DEVTVGKFYATFLIQEY 72 (81)
T ss_dssp ---CCCCHHHHHHHHHH
T ss_pred CcEeehHHHHHHHHHHH
Confidence 78999999999988853
No 5
>1dpg_A G6PD, glucose 6-phosphate dehydrogenase; oxidoreductase, NADP/NAD, glucose metabolism, oxidoreductase (CHOH(D) - NAD(P)); 2.00A {Leuconostoc mesenteroides} SCOP: c.2.1.3 d.81.1.5 PDB: 1e7y_A* 1e7m_A* 1h93_A 1h94_A* 1h9a_A* 1e77_A* 1h9b_A 2dpg_A*
Probab=25.75 E-value=11 Score=35.32 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhcccccCCc
Q 036217 34 FEMIQSHLSLVLGERLVGPL 53 (196)
Q Consensus 34 lEMI~eHL~~ilG~r~~~~~ 53 (196)
-+||||||..+|..-++-++
T Consensus 234 RDmvQNHLlQlL~lvAMEpP 253 (485)
T 1dpg_A 234 LDMIQNHTMQIVGWLAMEKP 253 (485)
T ss_dssp HHTTTTHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHcCCc
Confidence 48999999999998876544
No 6
>2bh9_A G6PD, glucose-6-phosphate 1-dehydrogenase; oxidoreductase, oxidoreductase (CHOH(D)-NADP), carbohydrate metabolism, glucose metabolism; HET: NAP; 2.5A {Homo sapiens} PDB: 2bhl_A* 1qki_A*
Probab=24.83 E-value=12 Score=35.21 Aligned_cols=21 Identities=19% Similarity=0.132 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHhcccccCCc
Q 036217 33 AFEMIQSHLSLVLGERLVGPL 53 (196)
Q Consensus 33 alEMI~eHL~~ilG~r~~~~~ 53 (196)
.-+||||||..+|..-++-++
T Consensus 230 lRDmvQNHLlQlL~lvAMEpP 250 (489)
T 2bh9_A 230 IRDVMQNHLLQMLCLVAMEKP 250 (489)
T ss_dssp HHHTTTTHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHhCCC
Confidence 458999999999998876554
No 7
>4e9i_A Glucose-6-phosphate 1-dehydrogenase; pentose phosphate pathway, alpha beta, NAD(P) rossmann-like domain, oxidoreductase; 2.85A {Trypanosoma cruzi} PDB: 4em5_A*
Probab=21.94 E-value=15 Score=35.03 Aligned_cols=20 Identities=25% Similarity=0.296 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhcccccCCc
Q 036217 34 FEMIQSHLSLVLGERLVGPL 53 (196)
Q Consensus 34 lEMI~eHL~~ilG~r~~~~~ 53 (196)
-+||||||..+|..-++-++
T Consensus 289 RDmvQNHLlQlL~LvAMEpP 308 (541)
T 4e9i_A 289 RDVIQNHLTQILSLLTMEKP 308 (541)
T ss_dssp HHTTTTHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHhcCCC
Confidence 47999999999998865544
No 8
>2joi_A Hypothetical protein TA0095; structural genomics, COG4004 orthologous group, structural genomics consortium, SGC, unknown function; NMR {Thermoplasma acidophilum}
Probab=15.26 E-value=26 Score=27.46 Aligned_cols=29 Identities=17% Similarity=0.267 Sum_probs=20.2
Q ss_pred HHHhhhhhcCCCceeecCCCCcccCCCceEEEechhhHHH
Q 036217 130 IEKQTQALFGRPDIRVLEDGSIDTSKDEVISVTFLGLTML 169 (196)
Q Consensus 130 IEkht~ALFG~p~i~i~~~Gsv~~~~de~i~isfs~LkrL 169 (196)
|++..+-.||.| ..+|+.+++||++|+++
T Consensus 39 I~~~l~e~Fg~~-----------~~~g~~~~~SyGal~~i 67 (118)
T 2joi_A 39 IKRKISELGFDV-----------KSEGDLIIASIPGISRI 67 (118)
T ss_dssp HHHHHHHHTCEE-----------EEETTEEEEECTTBSCE
T ss_pred HHHHHHHHcCCc-----------eecCCEEEEEecceeEE
Confidence 344445568843 25778899999999876
No 9
>2qfa_B Borealin; three-helical-bundle, long helix, protein complex, alternative splicing, apoptosis, cell cycle, cell division; HET: MES; 1.40A {Homo sapiens}
Probab=13.69 E-value=1e+02 Score=21.35 Aligned_cols=38 Identities=24% Similarity=0.349 Sum_probs=28.5
Q ss_pred ccchhhhhhhccCHHHHHHHHhhhhHHHHHHHHHhhhhhc
Q 036217 99 KSYRLRSYVMYLDAETLQRYATIRSKEAISLIEKQTQALF 138 (196)
Q Consensus 99 k~~~Lr~YVm~FD~eTLqr~A~iRSkEav~lIEkht~ALF 138 (196)
+..+|-+|+.-||.+--+++=.+|+.- +.+=|....+|
T Consensus 3 r~~KLasFLkDFD~ev~~~~~~~~~~~--~~llk~i~~~y 40 (62)
T 2qfa_B 3 RRRKLASFLKDFDREVEIRIKQIESDR--QNLLKEVDNLY 40 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 457899999999999999999999765 33334444444
No 10
>1ydy_A Glycerophosphoryl diester phosphodiesterase; structural genomics, PSI, protein structu initiative; 1.70A {Escherichia coli} SCOP: c.1.18.3 PDB: 1t8q_A
Probab=12.59 E-value=67 Score=27.38 Aligned_cols=18 Identities=28% Similarity=0.527 Sum_probs=15.8
Q ss_pred hhhhhccCHHHHHHHHhh
Q 036217 104 RSYVMYLDAETLQRYATI 121 (196)
Q Consensus 104 r~YVm~FD~eTLqr~A~i 121 (196)
|.+|+|||+++|+++.++
T Consensus 204 ~v~i~SF~~~~l~~~~~~ 221 (356)
T 1ydy_A 204 KVYLQCFDADELKRIKNE 221 (356)
T ss_dssp SBEEEESCHHHHHHHHHT
T ss_pred CEEEEcCCHHHHHHHHhh
Confidence 678999999999998775
Done!