Query 036219
Match_columns 149
No_of_seqs 104 out of 467
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 10:37:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036219.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036219hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1965 Sodium/hydrogen exchan 100.0 7.2E-30 1.6E-34 228.7 6.8 141 2-147 27-174 (575)
2 KOG1966 Sodium/hydrogen exchan 99.9 3.1E-23 6.7E-28 186.8 6.4 129 9-146 41-174 (670)
3 TIGR00840 b_cpa1 sodium/hydrog 99.7 2.5E-18 5.4E-23 155.2 8.1 129 11-147 10-143 (559)
4 TIGR00831 a_cpa1 Na+/H+ antipo 98.6 8.9E-08 1.9E-12 86.1 7.2 108 19-148 7-119 (525)
5 COG0025 NhaP NhaP-type Na+/H+ 98.4 1.2E-06 2.6E-11 77.2 7.7 121 9-147 5-130 (429)
6 PRK05326 potassium/proton anti 96.6 0.0068 1.5E-07 54.9 7.1 116 12-147 8-129 (562)
7 TIGR00844 c_cpa1 na(+)/h(+) an 94.7 0.097 2.1E-06 50.1 7.0 111 20-147 23-142 (810)
8 PF00999 Na_H_Exchanger: Sodiu 93.2 0.024 5.2E-07 47.9 -0.1 109 20-146 6-120 (380)
9 TIGR00932 2a37 transporter, mo 83.8 1.5 3.2E-05 35.7 3.8 105 20-146 2-112 (273)
10 PRK04125 murein hydrolase regu 60.9 33 0.00071 26.3 5.9 108 10-122 7-118 (141)
11 PF03818 MadM: Malonate/sodium 57.6 21 0.00046 23.7 3.8 33 20-52 21-54 (60)
12 COG4006 Uncharacterized protei 50.1 7.5 0.00016 32.8 0.8 44 35-91 161-210 (278)
13 PRK01658 holin-like protein; V 48.3 52 0.0011 24.4 5.1 107 10-121 4-114 (122)
14 COG0475 KefB Kef-type K+ trans 47.5 46 0.001 29.1 5.4 80 11-98 7-89 (397)
15 PF06790 UPF0259: Uncharacteri 37.6 31 0.00067 28.8 2.7 31 82-112 2-37 (248)
16 PRK13954 mscL large-conductanc 34.8 58 0.0013 24.4 3.5 44 79-122 39-85 (119)
17 PRK10669 putative cation:proto 34.7 1.1E+02 0.0024 27.7 6.0 38 13-53 9-46 (558)
18 PRK03562 glutathione-regulated 32.9 99 0.0021 28.7 5.5 101 11-119 6-108 (621)
19 PRK01821 hypothetical protein; 32.3 2.1E+02 0.0045 21.6 6.2 108 9-121 8-119 (133)
20 COG1380 Putative effector of m 30.2 1.9E+02 0.0042 21.8 5.7 107 10-122 5-116 (128)
21 PF02439 Adeno_E3_CR2: Adenovi 28.3 26 0.00057 21.3 0.6 18 37-54 1-18 (38)
22 PRK03659 glutathione-regulated 26.4 1.7E+02 0.0038 27.0 5.9 94 15-119 10-108 (601)
23 PF11166 DUF2951: Protein of u 26.1 91 0.002 22.6 3.1 26 93-118 67-94 (98)
24 PF03616 Glt_symporter: Sodium 25.5 3.1E+02 0.0067 23.9 7.0 39 20-58 13-55 (368)
25 PF12273 RCR: Chitin synthesis 22.7 1E+02 0.0022 22.6 3.0 14 21-34 14-27 (130)
26 PF12911 OppC_N: N-terminal TM 22.3 1.4E+02 0.003 18.2 3.2 28 88-115 9-36 (56)
27 KOG4505 Na+/H+ antiporter [Ino 21.5 1.8E+02 0.0039 26.2 4.6 86 26-121 29-125 (467)
28 PLN03159 cation/H(+) antiporte 20.6 5.1E+02 0.011 25.2 8.0 89 16-112 49-149 (832)
29 PF06946 Phage_holin_5: Phage 20.1 1.7E+02 0.0037 21.0 3.6 40 18-59 14-56 (93)
No 1
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.96 E-value=7.2e-30 Score=228.68 Aligned_cols=141 Identities=32% Similarity=0.551 Sum_probs=129.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCcchhhhhhhhhhhheeccccCCcc--ccccccccccceeeccc
Q 036219 2 AKEQQATGVGIILQIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLSVGALANISNTETN--IRYSFSFNELICSSATC 79 (149)
Q Consensus 2 ~~~~~~~s~~ll~~i~lL~~~~~~~~~l~~~~~~~lpEs~~~il~Gli~G~il~~~~~~~~--i~~~~~f~~~iFF~~~L 79 (149)
+|+||++++++++++++|++|++++|+++++|+||+|||++++++|+++|.+++++.++.. .++...|+|+.||.+ +
T Consensus 27 ~~~e~~~~~al~~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~~~~ff~v-L 105 (575)
T KOG1965|consen 27 SEQEHASSVALLFFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFSPDLFFLV-L 105 (575)
T ss_pred hhhhhcchhhHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEecccHHHHH-h
Confidence 5789999999999999999999999999999999999999999999999999999887432 125668999999999 9
Q ss_pred ccch----hhhc-chhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHhhhhhccc
Q 036219 80 LVMI----LFSW-QKPFFSNFGAIVTFAIFGTFLASMVMGIPVSVLFLLCSSFCFWAIPMIWICMWLKFEVSS 147 (149)
Q Consensus 80 LPPI----Gy~l-k~~FF~N~g~Il~fAvlGT~is~~~ig~~~y~~~~~gl~~~~~~~~~~~~c~~~~~~~~~ 147 (149)
|||| ||+| |++||||+++|+.+|+.||+||+.++|.+.|..+. +.. .+++++. ||+.||+..|.
T Consensus 106 LPpiif~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~-~~~--~~~~~f~-d~L~fGaliSA 174 (575)
T KOG1965|consen 106 LPPIIFNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGF-GLL--IYDLSFK-DCLAFGALISA 174 (575)
T ss_pred hchhhhcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhc-ccc--cccccHH-HHHHHhhHhcc
Confidence 9999 9999 99999999999999999999999999999999998 443 5889997 99999998875
No 2
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.88 E-value=3.1e-23 Score=186.83 Aligned_cols=129 Identities=21% Similarity=0.281 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccCcchhhhhhhhhhhheeccccCCccccccccccccceeecccccch----h
Q 036219 9 GVGIILQIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLSVGALANISNTETNIRYSFSFNELICSSATCLVMI----L 84 (149)
Q Consensus 9 s~~ll~~i~lL~~~~~~~~~l~~~~~~~lpEs~~~il~Gli~G~il~~~~~~~~i~~~~~f~~~iFF~~~LLPPI----G 84 (149)
...+-+++++-.++.+.-|..++ --+++||||++|++|+++|.+++...+. +...++|++||+| ||||| |
T Consensus 41 p~vi~lwil~asLaKi~fh~~~~-l~~i~PES~lLI~~Gl~lG~ii~~~~~~----~~~~L~s~vFFly-LLPPIvlDAG 114 (670)
T KOG1966|consen 41 PYVITLWILVASLAKIVFHLMPK-LRKIVPESCLLIILGLVLGGIIKALATI----APFFLESDVFFLY-LLPPIVLDAG 114 (670)
T ss_pred chhhHHHHHHHHHHHhccccccc-ccccCchhHHHHHHHHHHHHHHHhhhcc----ccccccccchhhh-hcCHHHhccc
Confidence 34445555555555555555542 2268999999999999999999988762 3457889999999 99999 9
Q ss_pred hhc-chhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHhhhhhcc
Q 036219 85 FSW-QKPFFSNFGAIVTFAIFGTFLASMVMGIPVSVLFLLCSSFCFWAIPMIWICMWLKFEVS 146 (149)
Q Consensus 85 y~l-k~~FF~N~g~Il~fAvlGT~is~~~ig~~~y~~~~~gl~~~~~~~~~~~~c~~~~~~~~ 146 (149)
|+| +|.||+|+|+|++||++||+||++.+|..+|.+++.|+-.. +++++ +=+.||+..|
T Consensus 115 YfMp~r~Ff~NlgtILlfAVvGTi~Na~~~g~sL~~i~~~glf~~--~~gll-d~LlFgSLIs 174 (670)
T KOG1966|consen 115 YFMPNRAFFENLGTILLFAVVGTIWNAFTIGASLYAISLSGLFGM--SIGLL-DILLFGSLIS 174 (670)
T ss_pred ccCccHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCC--CchHH-HHHHHHHHHH
Confidence 999 99999999999999999999999999999999999998522 47887 9999998765
No 3
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=99.75 E-value=2.5e-18 Score=155.22 Aligned_cols=129 Identities=23% Similarity=0.330 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccCcchhhhhhhhhhhheeccccCCccccccccccccceeecccccch----hhh
Q 036219 11 GIILQIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLSVGALANISNTETNIRYSFSFNELICSSATCLVMI----LFS 86 (149)
Q Consensus 11 ~ll~~i~lL~~~~~~~~~l~~~~~~~lpEs~~~il~Gli~G~il~~~~~~~~i~~~~~f~~~iFF~~~LLPPI----Gy~ 86 (149)
.+.+++++..++ ..++.+.|++.+.+||+++.+++|+++|.+.+..+.. +...+||++||.+ +|||| ||+
T Consensus 10 ~~~~~~l~~~~~-~~~~~~~~~~~~~lP~s~llil~GlllG~i~~~~~~~----~~~~l~~~lf~~~-~LPpIlFe~g~~ 83 (559)
T TIGR00840 10 EFILWILLASLA-KIGFHLTHKVIRAVPESVLLIVYGLLVGGIIKASPHI----DPPTLDSSYFFLY-LLPPIVLDAGYF 83 (559)
T ss_pred HHHHHHHHHHHH-HHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHcCCCC----ccCCcCHHHHHHH-HHHHHHHHHHhc
Confidence 333443333333 3567777788889999999999999999987766542 3457999999999 99999 999
Q ss_pred c-chhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHhhhhhccc
Q 036219 87 W-QKPFFSNFGAIVTFAIFGTFLASMVMGIPVSVLFLLCSSFCFWAIPMIWICMWLKFEVSS 147 (149)
Q Consensus 87 l-k~~FF~N~g~Il~fAvlGT~is~~~ig~~~y~~~~~gl~~~~~~~~~~~~c~~~~~~~~~ 147 (149)
+ +|.|++|+++|+++|++||+++++++|..+|++...+.... .++|+. +|+.||+-+|+
T Consensus 84 l~~~~f~~n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~-~~l~~~-~allfGAiiSa 143 (559)
T TIGR00840 84 MPQRNFFENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGS-IDIGLL-DNLLFGSLISA 143 (559)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-cCCCHH-HHHHHhHHhcC
Confidence 9 99999999999999999999999999999998765443211 467876 99999998876
No 4
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=98.61 E-value=8.9e-08 Score=86.09 Aligned_cols=108 Identities=19% Similarity=0.287 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHhhccccccCcchhhhhhhhhhhheeccccCCccccccccccccceeecccccch----hhhc-chhhhc
Q 036219 19 LVLSFVLGHVLRRHKFYYLPEASASLLIGLSVGALANISNTETNIRYSFSFNELICSSATCLVMI----LFSW-QKPFFS 93 (149)
Q Consensus 19 L~~~~~~~~~l~~~~~~~lpEs~~~il~Gli~G~il~~~~~~~~i~~~~~f~~~iFF~~~LLPPI----Gy~l-k~~FF~ 93 (149)
+++........++. -+|.....++.|+++|...... ...+||+.++.. .|||+ |+++ .+.|.+
T Consensus 7 ~~~~~~~~~l~~r~---~lP~~v~lil~Gi~lg~~~~~~--------~~~~~~~~~~~~-~Lp~lLF~~g~~~~~~~l~~ 74 (525)
T TIGR00831 7 VMLATAVAVTVKFI---RLPYPIALILAGLLLGLAGLLP--------EVPLDREIVLFL-FLPPLLFEAAMNTDLRELRE 74 (525)
T ss_pred HHHHHHHHHHhccc---CCCHHHHHHHHHHHHHhccccC--------CCCCCHHHHHHH-HHHHHHHHHHhcCCHHHHHH
Confidence 33333344444433 4899999999999999653211 245788999998 99999 9999 999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHhhhhhcccC
Q 036219 94 NFGAIVTFAIFGTFLASMVMGIPVSVLFLLCSSFCFWAIPMIWICMWLKFEVSSA 148 (149)
Q Consensus 94 N~g~Il~fAvlGT~is~~~ig~~~y~~~~~gl~~~~~~~~~~~~c~~~~~~~~~~ 148 (149)
|..+|...|+.|+++++.++|...++. .| +|+. .|+.+|+-+|+.
T Consensus 75 ~~~~i~~la~~~vlit~~~v~~~~~~~--~~-------l~~~-~alllGails~T 119 (525)
T TIGR00831 75 NFRPIALIAFLLVVVTTVVVGFSLNWI--LG-------IPLA-LALILGAVLSPT 119 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--hc-------ccHH-HHHHHHHHhCCC
Confidence 999999999999999999999888763 33 3455 899999988763
No 5
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=98.37 E-value=1.2e-06 Score=77.23 Aligned_cols=121 Identities=18% Similarity=0.247 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccCcchhhhhhhhhhhheeccccCCccccccccccccceeecccccch----h
Q 036219 9 GVGIILQIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLSVGALANISNTETNIRYSFSFNELICSSATCLVMI----L 84 (149)
Q Consensus 9 s~~ll~~i~lL~~~~~~~~~l~~~~~~~lpEs~~~il~Gli~G~il~~~~~~~~i~~~~~f~~~iFF~~~LLPPI----G 84 (149)
...++...+++.+....++..++.+ +|+-....+.|++.|........ ....++++.|... .+||+ |
T Consensus 5 ~~~~~~~~lil~l~~~~~~~~~~l~---~~~i~~~ll~g~i~g~~~l~~~~-----~~~~~~~el~~~l-~l~ilLf~~g 75 (429)
T COG0025 5 LMLLFLLLLILLLGLLVSVLAGRLL---LPEIPLLLLLGLLGGPPGLNLIS-----PDLELDPELFLVL-FLAILLFAGG 75 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh---hhhhHHHHHHHHHHhhhhhcccc-----ccccCChHHHHHH-HHHHHHHHhH
Confidence 3445555666666666677766555 44555556666666633322221 1245778888887 99999 9
Q ss_pred hhc-chhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHhhhhhccc
Q 036219 85 FSW-QKPFFSNFGAIVTFAIFGTFLASMVMGIPVSVLFLLCSSFCFWAIPMIWICMWLKFEVSS 147 (149)
Q Consensus 85 y~l-k~~FF~N~g~Il~fAvlGT~is~~~ig~~~y~~~~~gl~~~~~~~~~~~~c~~~~~~~~~ 147 (149)
+++ +|+..||..+|...|..|+++++.++|...|+. +| ++|+. +|+.+|+-+|.
T Consensus 76 ~~l~~~~l~~~~~~I~~La~~~v~it~~~~g~~~~~l--~~------~i~~~-~a~l~gAilsp 130 (429)
T COG0025 76 LELDLRELRRVWRSILVLALPLVLITALGIGLLAHWL--LP------GIPLA-AAFLLGAILSP 130 (429)
T ss_pred hcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hC------ChhHH-HHHHHhHHhcC
Confidence 999 999999999999999999999999999999998 33 35676 99999998763
No 6
>PRK05326 potassium/proton antiporter; Reviewed
Probab=96.59 E-value=0.0068 Score=54.90 Aligned_cols=116 Identities=17% Similarity=0.240 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccCcchhhhhhhhhhhheecc-ccCCccccccccccccceeecccccch----hhh
Q 036219 12 IILQIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLSVGALANI-SNTETNIRYSFSFNELICSSATCLVMI----LFS 86 (149)
Q Consensus 12 ll~~i~lL~~~~~~~~~l~~~~~~~lpEs~~~il~Gli~G~il~~-~~~~~~i~~~~~f~~~iFF~~~LLPPI----Gy~ 86 (149)
++...++++++.+.+...+|.+ +|.-...++.|+++|--... ...++ . + . .+.+-.. -++.| |++
T Consensus 8 ll~~~~ll~l~~~~~~l~~r~~---~P~ll~~il~GillGp~~lg~i~~~~-~-~---~-~~~i~~l-~L~~iLF~~Gl~ 77 (562)
T PRK05326 8 LLIGALLLLLSILASRLSSRLG---IPSLLLFLAIGMLAGEDGLGGIQFDN-Y-P---L-AYLVGNL-ALAVILFDGGLR 77 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC---CcHHHHHHHHHHHhCccccCCcccCc-H-H---H-HHHHHHH-HHHHHHHcCccC
Confidence 3334455666666677666554 78888889999999863321 11100 0 0 0 1334444 66777 999
Q ss_pred c-chhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHhhhhhccc
Q 036219 87 W-QKPFFSNFGAIVTFAIFGTFLASMVMGIPVSVLFLLCSSFCFWAIPMIWICMWLKFEVSS 147 (149)
Q Consensus 87 l-k~~FF~N~g~Il~fAvlGT~is~~~ig~~~y~~~~~gl~~~~~~~~~~~~c~~~~~~~~~ 147 (149)
+ .+.+.+|..+++..|.+|+++++..+|...+..- |. |.. +|+.+|+-+++
T Consensus 78 ~~~~~l~~~~~~~~~la~~gv~~t~~~~g~~~~~l~--g~-------~~~-~alllgai~s~ 129 (562)
T PRK05326 78 TRWSSFRPALGPALSLATLGVLITAGLTGLFAHWLL--GL-------DWL-EGLLLGAIVGS 129 (562)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cC-------CHH-HHHHHhhhhcc
Confidence 9 8999999999999999999999999887765442 33 455 89999988775
No 7
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=94.73 E-value=0.097 Score=50.14 Aligned_cols=111 Identities=13% Similarity=0.147 Sum_probs=75.5
Q ss_pred HHHHHHHHHHhhccccccCcchhhhhhhhhhhheec-cccCCccccccccccccc---eeecccccch----hhhc-chh
Q 036219 20 VLSFVLGHVLRRHKFYYLPEASASLLIGLSVGALAN-ISNTETNIRYSFSFNELI---CSSATCLVMI----LFSW-QKP 90 (149)
Q Consensus 20 ~~~~~~~~~l~~~~~~~lpEs~~~il~Gli~G~il~-~~~~~~~i~~~~~f~~~i---FF~~~LLPPI----Gy~l-k~~ 90 (149)
++..++..+++++. .+|++.+.++.|+++|-... ..++. + ...+..+ +.-+ .|+.+ |..+ ++.
T Consensus 23 ll~~l~s~~lkeRl--~Ls~~~v~Ll~GiilGP~~l~~idP~----~-~g~~d~i~leIteI-vL~I~LFa~Gl~L~~~~ 94 (810)
T TIGR00844 23 SIFSLVSLFVKEKL--YIGESMVASIFGLIVGPHCLNWFNPL----S-WGNTDSITLEISRI-LLCLQVFAVSVELPRKY 94 (810)
T ss_pred HHHHHHHHHHHhhc--CCcHHHHHHHHHHHhhhhhhccCChh----h-cccchHHHHHHHHH-HHHHHHHHHHHhCCHHH
Confidence 33444556666444 79999999999999997543 22211 0 1111111 3223 45555 9999 999
Q ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHhhhhhccc
Q 036219 91 FFSNFGAIVTFAIFGTFLASMVMGIPVSVLFLLCSSFCFWAIPMIWICMWLKFEVSS 147 (149)
Q Consensus 91 FF~N~g~Il~fAvlGT~is~~~ig~~~y~~~~~gl~~~~~~~~~~~~c~~~~~~~~~ 147 (149)
..+|..++...+++|..++..+++...|++- .| +|+. .|+++|+-+++
T Consensus 95 Lrr~wrsV~rLl~~~M~lT~livAL~a~~Li-~G-------L~~~-~ALLLGAILAP 142 (810)
T TIGR00844 95 MLKHWVSVTMLLVPVMTSGWLVIALFVWILV-PG-------LNFP-ASLLMGACITA 142 (810)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-cC-------CCHH-HHHHHHhhhcC
Confidence 9999999999999999999999888877652 12 3444 89999988765
No 8
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=93.25 E-value=0.024 Score=47.93 Aligned_cols=109 Identities=20% Similarity=0.309 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhhccccccCcchhhhhhhhhhhheeccccCCccccccccccccceeecccccch----hhhc-chhhhcc
Q 036219 20 VLSFVLGHVLRRHKFYYLPEASASLLIGLSVGALANISNTETNIRYSFSFNELICSSATCLVMI----LFSW-QKPFFSN 94 (149)
Q Consensus 20 ~~~~~~~~~l~~~~~~~lpEs~~~il~Gli~G~il~~~~~~~~i~~~~~f~~~iFF~~~LLPPI----Gy~l-k~~FF~N 94 (149)
..+.+.++..||.| +|+....++.|++.|......-+++ .-+.+.+... -++.+ |+++ .+.+.||
T Consensus 6 ~~~~~~~~l~~r~~---iP~~i~~i~~Gi~lg~~~~~~~~~~------~~~~~~l~~i-~l~~llF~~G~~~d~~~l~~~ 75 (380)
T PF00999_consen 6 LLAFVAGILFRRLG---IPSIIGYILVGIVLGPSGLGLLEPD------NPSFELLAEI-GLAFLLFEAGLELDIKELRRN 75 (380)
T ss_dssp ---------------------------------------------------S-SSHHH-HS--SSHHHHTTGGGG-----
T ss_pred ehHHHHHHHHHHhC---CCHHHHHHHheeehhhhhhhhccch------hhHHHHHHHH-HHHHHHHHHHHhhcccccccc
Confidence 33444555444444 8999999999999998765422111 1224556665 77777 9999 8899999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-HHhhcccccccccchHHHHHhhhhhcc
Q 036219 95 FGAIVTFAIFGTFLASMVMGIPVSV-LFLLCSSFCFWAIPMIWICMWLKFEVS 146 (149)
Q Consensus 95 ~g~Il~fAvlGT~is~~~ig~~~y~-~~~~gl~~~~~~~~~~~~c~~~~~~~~ 146 (149)
....+..+..++..+...+|..++. ....| .|.. +|+++|.-.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-~al~l~~~~~ 120 (380)
T PF00999_consen 76 WRRALALGLVGFLLPFILVGFLLSFFLFILG-------LSWA-EALLLGAILS 120 (380)
T ss_dssp ----------------------------------------------TTHHHHT
T ss_pred cccccccccceeeehhhHHHHHHHHhhccch-------hhhH-HHhhhHHhhh
Confidence 9999999999999999987877774 31222 3454 7777776554
No 9
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=83.79 E-value=1.5 Score=35.68 Aligned_cols=105 Identities=10% Similarity=0.152 Sum_probs=66.3
Q ss_pred HHHHHHHHHHhhccccccCcchhhhhhhhhhhheecc-ccCCccccccccccccceeecccccch----hhhc-chhhhc
Q 036219 20 VLSFVLGHVLRRHKFYYLPEASASLLIGLSVGALANI-SNTETNIRYSFSFNELICSSATCLVMI----LFSW-QKPFFS 93 (149)
Q Consensus 20 ~~~~~~~~~l~~~~~~~lpEs~~~il~Gli~G~il~~-~~~~~~i~~~~~f~~~iFF~~~LLPPI----Gy~l-k~~FF~ 93 (149)
.++.+.+...||.| +|+....++.|++.|-.... .+++ +....=.++ -+..+ |+.+ .|.+.|
T Consensus 2 ~~a~~~~~l~~~l~---lP~~v~~il~GillGp~~lg~i~~~----~~~~~l~~i-----gl~~llF~~Gl~~d~~~l~~ 69 (273)
T TIGR00932 2 LAAVLAVPLSRRLG---IPSVLGYLLAGVLIGPSGLGLISNV----EGVNHLAEF-----GVILLMFLIGLELDLERLWK 69 (273)
T ss_pred cHHHHHHHHHHHhC---CCHHHHHHHHHHHhCcccccCCCCh----HHHHHHHHH-----HHHHHHHHHHhCCCHHHHHH
Confidence 34556677777654 77888889999999853321 1111 111110111 11222 9999 889999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHhhhhhcc
Q 036219 94 NFGAIVTFAIFGTFLASMVMGIPVSVLFLLCSSFCFWAIPMIWICMWLKFEVS 146 (149)
Q Consensus 94 N~g~Il~fAvlGT~is~~~ig~~~y~~~~~gl~~~~~~~~~~~~c~~~~~~~~ 146 (149)
|......-|..|.+++++.+|...... .|. |.. +|+.+|+-++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-------~~~-~~~~lg~~ls 112 (273)
T TIGR00932 70 LRKAAFGVGVLQVLVPGVLLGLLLGHL--LGL-------ALG-AAVVIGIILA 112 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HCC-------CHH-HHHHHHHHHH
Confidence 999999999999999977777644332 233 344 7777776554
No 10
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=60.88 E-value=33 Score=26.33 Aligned_cols=108 Identities=9% Similarity=0.010 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccCcchhhhhhhhhhhheeccccCCccccccccc--cccceeecccccch-hhh
Q 036219 10 VGIILQIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLSVGALANISNTETNIRYSFSF--NELICSSATCLVMI-LFS 86 (149)
Q Consensus 10 ~~ll~~i~lL~~~~~~~~~l~~~~~~~lpEs~~~il~Gli~G~il~~~~~~~~i~~~~~f--~~~iFF~~~LLPPI-Gy~ 86 (149)
..++..+.++..+-.++..+.+.---.+|.|..-+++ +...+..-..+.+.+++.-+| +.--+| +.|+- |--
T Consensus 7 ~~~l~ql~ill~~~~lGe~i~~ll~lPiPGsViGMlL--L~l~L~~~~vk~~~v~~~a~~LL~~m~Lf---FVPagVGim 81 (141)
T PRK04125 7 YSFLHQAFIFAAIMLISNIIASFLPIPMPASVIGLVL--LFVLLCTKVVKLEQVESLGTALTNNIGFL---FVPSGISVI 81 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHH--HHHHHHhCCcCHHHHHHHHHHHHHHHHHH---HhhhHhHHH
Confidence 4566677788888888888876544455555443222 222222111111222222122 222233 34664 443
Q ss_pred c-chhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036219 87 W-QKPFFSNFGAIVTFAIFGTFLASMVMGIPVSVLFL 122 (149)
Q Consensus 87 l-k~~FF~N~g~Il~fAvlGT~is~~~ig~~~y~~~~ 122 (149)
- -..+-+|.-.|+.--+++|++.-.++|..+....+
T Consensus 82 ~~~~ll~~~~~~Il~~ivvSTllvl~vtg~v~~~l~r 118 (141)
T PRK04125 82 NSLGVMSQYPVQIIGVIIVATILLLACTGLFSQFILG 118 (141)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 44566677778888889999999999988766544
No 11
>PF03818 MadM: Malonate/sodium symporter MadM subunit; InterPro: IPR018402 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=57.64 E-value=21 Score=23.71 Aligned_cols=33 Identities=9% Similarity=0.131 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhhc-cccccCcchhhhhhhhhhhh
Q 036219 20 VLSFVLGHVLRRH-KFYYLPEASASLLIGLSVGA 52 (149)
Q Consensus 20 ~~~~~~~~~l~~~-~~~~lpEs~~~il~Gli~G~ 52 (149)
.+...++|.+.++ -.-.+|.|..++++|++...
T Consensus 21 G~~m~~S~~lS~~LT~GrihGSAIAI~lGLvLAy 54 (60)
T PF03818_consen 21 GIIMWVSYWLSKKLTRGRIHGSAIAIVLGLVLAY 54 (60)
T ss_pred HHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH
Confidence 3444455555433 22569999999999998643
No 12
>COG4006 Uncharacterized protein conserved in archaea [Function unknown]
Probab=50.09 E-value=7.5 Score=32.83 Aligned_cols=44 Identities=20% Similarity=0.161 Sum_probs=30.5
Q ss_pred cccCcchhhhhhhhhhhhe-eccccCCccccccccccccceeecccccch----hhhc-chhh
Q 036219 35 YYLPEASASLLIGLSVGAL-ANISNTETNIRYSFSFNELICSSATCLVMI----LFSW-QKPF 91 (149)
Q Consensus 35 ~~lpEs~~~il~Gli~G~i-l~~~~~~~~i~~~~~f~~~iFF~~~LLPPI----Gy~l-k~~F 91 (149)
-+=|||+.+++.|.+.|.- +++.+. .||. .+ .+||| +|-+ ...+
T Consensus 161 GfKPES~fltLagsLaGa~~vyYihE--------~fnd----vV-~iPpi~~~P~~~l~Lie~ 210 (278)
T COG4006 161 GFKPESGFLTLAGSLAGASAVYYIHE--------AFND----VV-FIPPIRLSPQVDLHLIED 210 (278)
T ss_pred CCCchHHHHHHHHHHcCCceeEeeHH--------hhCC----ce-ecCCeecCchHHHHHHHH
Confidence 3569999999999999997 455543 3443 24 77888 6665 4433
No 13
>PRK01658 holin-like protein; Validated
Probab=48.27 E-value=52 Score=24.44 Aligned_cols=107 Identities=15% Similarity=0.098 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccCcchhhhhhhhhhhheeccccCCccccccccc--cccceeecccccch-hhh
Q 036219 10 VGIILQIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLSVGALANISNTETNIRYSFSF--NELICSSATCLVMI-LFS 86 (149)
Q Consensus 10 ~~ll~~i~lL~~~~~~~~~l~~~~~~~lpEs~~~il~Gli~G~il~~~~~~~~i~~~~~f--~~~iFF~~~LLPPI-Gy~ 86 (149)
..++..+.++..+-..+..+++.---.+|.|..-+++ +...+..-..+.+.+++.-+| +.--+|+ .|+- |--
T Consensus 4 ~~~l~~l~il~~~~~~G~~i~~~l~lpiPGsViGmlL--L~~~L~~~~ik~~~v~~~a~~Ll~~m~llF---VPa~VGi~ 78 (122)
T PRK01658 4 VKLLVQIALLYVFALVGTWIQEQLHLPIPGSIIGIFL--LLLLLSFKILKLKWIELGAETLLAELPLFF---IPSAVGVM 78 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHH--HHHHHHhCCcCHHHHHHHHHHHHHHHHHHH---HHhhhHHH
Confidence 4456677777788888888776543455555443322 222221111111222221111 2333333 3554 444
Q ss_pred c-chhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036219 87 W-QKPFFSNFGAIVTFAIFGTFLASMVMGIPVSVLF 121 (149)
Q Consensus 87 l-k~~FF~N~g~Il~fAvlGT~is~~~ig~~~y~~~ 121 (149)
- .+.+-+|.-.|+.--+++|++.-.++|.......
T Consensus 79 ~~~~ll~~~~~~il~~ivvsT~l~l~vtg~~~~~l~ 114 (122)
T PRK01658 79 NYGDFLSSKGISLFLVVVISTFVVMIVTGYLTQLLA 114 (122)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 5567777788888889999999999998766543
No 14
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=47.48 E-value=46 Score=29.14 Aligned_cols=80 Identities=16% Similarity=0.235 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccCcchhhhhhhhhhhh-ee-ccccCCccccccccccccceeecccccchhhhc-
Q 036219 11 GIILQIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLSVGA-LA-NISNTETNIRYSFSFNELICSSATCLVMILFSW- 87 (149)
Q Consensus 11 ~ll~~i~lL~~~~~~~~~l~~~~~~~lpEs~~~il~Gli~G~-il-~~~~~~~~i~~~~~f~~~iFF~~~LLPPIGy~l- 87 (149)
.+.-...++.++.+.++..||.+ +|.-..-++.|+++|- .. ...++ ++..++=.|+=..+ |+.-+|...
T Consensus 7 ~l~~~~iiL~~a~i~~~l~~rl~---lp~vlg~llaGiilGp~~~~~~~~~----~~~i~~laelGvi~-LlF~~GLE~~ 78 (397)
T COG0475 7 ILLQLLILLLVAVILGPLFKRLG---LPPVLGYLLAGIILGPWGLLLIIES----SEIIELLAELGVVF-LLFLIGLEFD 78 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC---CchHHHHHHHHHhcCcccccccCCc----hHHHHHHHHHhHHH-HHHHHHHCcC
Confidence 34455667778888899998877 5666777888999996 22 22222 12233223333333 444459998
Q ss_pred chhhhcchhHH
Q 036219 88 QKPFFSNFGAI 98 (149)
Q Consensus 88 k~~FF~N~g~I 98 (149)
-+++.||-..+
T Consensus 79 ~~~l~~~~~~~ 89 (397)
T COG0475 79 LERLKKVGRSV 89 (397)
T ss_pred HHHHHHhchhh
Confidence 88888888885
No 15
>PF06790 UPF0259: Uncharacterised protein family (UPF0259); InterPro: IPR009627 This is a group of proteins of unknown function.
Probab=37.58 E-value=31 Score=28.77 Aligned_cols=31 Identities=23% Similarity=0.449 Sum_probs=22.7
Q ss_pred ch-hhhc-ch--hhhcc-hhHHHHHHHHHHHHHHHH
Q 036219 82 MI-LFSW-QK--PFFSN-FGAIVTFAIFGTFLASMV 112 (149)
Q Consensus 82 PI-Gy~l-k~--~FF~N-~g~Il~fAvlGT~is~~~ 112 (149)
|| ..++ ++ +|||| +.+|++.+.+.|+++.+.
T Consensus 2 ~ita~~l~rDs~nFfrnq~~~I~llsll~a~itvil 37 (248)
T PF06790_consen 2 PITANSLYRDSFNFFRNQLISILLLSLLTAFITVIL 37 (248)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45 4555 44 67776 678999999999998664
No 16
>PRK13954 mscL large-conductance mechanosensitive channel; Provisional
Probab=34.76 E-value=58 Score=24.39 Aligned_cols=44 Identities=7% Similarity=0.098 Sum_probs=27.4
Q ss_pred cccchhhhc-chhhhcch--hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036219 79 CLVMILFSW-QKPFFSNF--GAIVTFAIFGTFLASMVMGIPVSVLFL 122 (149)
Q Consensus 79 LLPPIGy~l-k~~FF~N~--g~Il~fAvlGT~is~~~ig~~~y~~~~ 122 (149)
+.|+||.-. ...|-+.+ ..+-.=+++.+++|+++++..+|..-+
T Consensus 39 imPlI~~~~g~~~~~~~~~~~~i~yG~fl~avinFlIiA~vvF~~vk 85 (119)
T PRK13954 39 IMPLIGKIFGSVDFAKEWSFWGIKYGLFIQSVIDFIIIAFALFIFVK 85 (119)
T ss_pred HhhccccccCCcccccchhhhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677774444 32221111 123333489999999999999998664
No 17
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=34.74 E-value=1.1e+02 Score=27.71 Aligned_cols=38 Identities=29% Similarity=0.459 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccCcchhhhhhhhhhhhe
Q 036219 13 ILQIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLSVGAL 53 (149)
Q Consensus 13 l~~i~lL~~~~~~~~~l~~~~~~~lpEs~~~il~Gli~G~i 53 (149)
..+..+++++.+.++..||.| .|.-..-++.|+++|-.
T Consensus 9 ~~~~~~l~~a~~~~~l~~rl~---~P~ivg~IlaGillGp~ 46 (558)
T PRK10669 9 TTIVGGLVLAFILGMLANRLR---ISPLVGYLLAGVLAGPF 46 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHcC---CCHHHHHHHHHHhhCcc
Confidence 334556777778888888765 55666778889988863
No 18
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=32.93 E-value=99 Score=28.75 Aligned_cols=101 Identities=13% Similarity=0.128 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccCcchhhhhhhhhhhheec-cccCCccccccccccccceeecccccchhhhc-c
Q 036219 11 GIILQIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLSVGALAN-ISNTETNIRYSFSFNELICSSATCLVMILFSW-Q 88 (149)
Q Consensus 11 ~ll~~i~lL~~~~~~~~~l~~~~~~~lpEs~~~il~Gli~G~il~-~~~~~~~i~~~~~f~~~iFF~~~LLPPIGy~l-k 88 (149)
-+.-.+.++..+.+.+...||.+ +|.-..-++.|+++|-... .....+.++. + .++-..+ ++==+|..+ -
T Consensus 6 ~l~~~~~~l~~a~i~~~l~~rl~---lp~vlgyilaGillGP~~lg~i~~~~~i~~---l-aelGvv~-LlF~iGLEl~~ 77 (621)
T PRK03562 6 TLIQALIYLGAAVLIVPIAVRLG---LGSVLGYLIAGCIIGPWGLRLVTDVESILH---F-AEFGVVL-MLFVIGLELDP 77 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC---CChHHHHHHHHHHhCcccccCCCCHHHHHH---H-HHHHHHH-HHHHHHhCcCH
Confidence 34445566667778888888766 4555666777888885322 1121111111 1 1121111 111228888 7
Q ss_pred hhhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 036219 89 KPFFSNFGAIVTFAIFGTFLASMVMGIPVSV 119 (149)
Q Consensus 89 ~~FF~N~g~Il~fAvlGT~is~~~ig~~~y~ 119 (149)
+...++-..+...+......++.+.....+.
T Consensus 78 ~~l~~~~~~~~~~g~~qv~~~~~~~~~~~~~ 108 (621)
T PRK03562 78 QRLWKLRRSIFGGGALQMVACGGLLGLFCML 108 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777776665544444
No 19
>PRK01821 hypothetical protein; Provisional
Probab=32.34 E-value=2.1e+02 Score=21.65 Aligned_cols=108 Identities=14% Similarity=0.074 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccCcchhhhhhhhhhhheeccccCCcccccccc--ccccceeecccccch-hh
Q 036219 9 GVGIILQIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLSVGALANISNTETNIRYSFS--FNELICSSATCLVMI-LF 85 (149)
Q Consensus 9 s~~ll~~i~lL~~~~~~~~~l~~~~~~~lpEs~~~il~Gli~G~il~~~~~~~~i~~~~~--f~~~iFF~~~LLPPI-Gy 85 (149)
...++..+.++..+-.++..+.+.---.+|.|..-+++ +...+..-..+.+.+++.-+ .+.--+|++ |+- |-
T Consensus 8 ~~~~l~~l~ill~~~~~Ge~i~~~l~lpiPGsViGmlL--Lf~~L~~~~vk~~~v~~~a~~LL~~m~LfFV---Pa~VGi 82 (133)
T PRK01821 8 IWQYLRAFVLIYACLYAGIFIASLLPITIPGSIIGMLI--LFVLLALQILPAKWVKPGCSLLIRYMALLFV---PIGVGV 82 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHH--HHHHHHhCCcCHHHHHHHHHHHHHHHHHHHh---hhHHHH
Confidence 35566667777777777877775443345555443322 12111111111122222111 233333433 554 44
Q ss_pred hc-chhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036219 86 SW-QKPFFSNFGAIVTFAIFGTFLASMVMGIPVSVLF 121 (149)
Q Consensus 86 ~l-k~~FF~N~g~Il~fAvlGT~is~~~ig~~~y~~~ 121 (149)
-- ...+-+|.-.|+.--+++|++.-.++|..+-...
T Consensus 83 m~~~~ll~~~~~~il~~ivvST~lvl~vtg~~~~~l~ 119 (133)
T PRK01821 83 MQYYDLLRAQFGPIVVSCIVSTLVVLLVVGWSSHYVH 119 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 5677778888888888999999999998776554
No 20
>COG1380 Putative effector of murein hydrolase LrgA [General function prediction only]
Probab=30.22 E-value=1.9e+02 Score=21.76 Aligned_cols=107 Identities=15% Similarity=0.114 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccCcchhhhhhhhhhhhe-eccccCCcccccccc--ccccceeecccccch-hh
Q 036219 10 VGIILQIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLSVGAL-ANISNTETNIRYSFS--FNELICSSATCLVMI-LF 85 (149)
Q Consensus 10 ~~ll~~i~lL~~~~~~~~~l~~~~~~~lpEs~~~il~Gli~G~i-l~~~~~~~~i~~~~~--f~~~iFF~~~LLPPI-Gy 85 (149)
..+..++.++..+..++-.+.+.---.+|-|...+++ +..++ .+.... +.+++--+ .+.-.+|+ .|+= |-
T Consensus 5 ~~~~~q~~ii~~~~~~G~~i~~~l~lplPGsIiGmvL--LfllL~~~iv~l-~wv~~~a~~Ll~~m~llF---VPa~VgV 78 (128)
T COG1380 5 MQILRQLAIILGFLFLGEWIASLLHLPLPGSIIGMVL--LFLLLALKIVKL-EWVERGATFLLRNMALLF---VPAGVGV 78 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHH--HHHHHHhCCccH-HHHHHHHHHHHHHHHHHH---hcchHHH
Confidence 3455667777777777777776443455655544322 11111 111111 11111111 12333333 4664 43
Q ss_pred hc-chhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036219 86 SW-QKPFFSNFGAIVTFAIFGTFLASMVMGIPVSVLFL 122 (149)
Q Consensus 86 ~l-k~~FF~N~g~Il~fAvlGT~is~~~ig~~~y~~~~ 122 (149)
-- .+..-+|...|+.-.+++|++...++|...-..-+
T Consensus 79 m~y~~~l~~~~~~Il~~~iiST~lv~~vtg~~~~~l~~ 116 (128)
T COG1380 79 MNYFDLLAADGLPILVVIIISTLLVLLVTGWVVQLLIR 116 (128)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 45667788899999999999999999988766543
No 21
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=28.32 E-value=26 Score=21.25 Aligned_cols=18 Identities=17% Similarity=0.571 Sum_probs=15.5
Q ss_pred cCcchhhhhhhhhhhhee
Q 036219 37 LPEASASLLIGLSVGALA 54 (149)
Q Consensus 37 lpEs~~~il~Gli~G~il 54 (149)
+|+|..+++.|+++|..+
T Consensus 1 ip~s~IaIIv~V~vg~~i 18 (38)
T PF02439_consen 1 IPSSTIAIIVAVVVGMAI 18 (38)
T ss_pred CCcchhhHHHHHHHHHHH
Confidence 589999999999999755
No 22
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=26.42 E-value=1.7e+02 Score=26.96 Aligned_cols=94 Identities=14% Similarity=0.182 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHhhccccccCcchhhhhhhhhhhhee-ccccCCccccccccccccc---eeecccccchhhhc-ch
Q 036219 15 QIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLSVGALA-NISNTETNIRYSFSFNELI---CSSATCLVMILFSW-QK 89 (149)
Q Consensus 15 ~i~lL~~~~~~~~~l~~~~~~~lpEs~~~il~Gli~G~il-~~~~~~~~i~~~~~f~~~i---FF~~~LLPPIGy~l-k~ 89 (149)
.+.++..+.+.+...+|.| +|.-..-++.|+++|-.. ...+..+.+. .+ .++ |..+ =+|..+ .+
T Consensus 10 ~~~~l~~a~~~~~l~~rl~---~p~ilg~ilaGillGP~~lg~i~~~~~i~---~l-aelGvv~LLF----~iGLel~~~ 78 (601)
T PRK03659 10 GVLFLFAAVVAVPLAQRLG---IGAVLGYLLAGIAIGPWGLGFISDVDEIL---HF-SELGVVFLMF----IIGLELNPS 78 (601)
T ss_pred HHHHHHHHHHHHHHHHHhC---CChHHHHHHHHHHhccccccCCCcHHHHH---HH-HHHHHHHHHH----HHHhcCCHH
Confidence 3455566667778887655 466677778888888532 2222111111 11 111 1111 128888 77
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 036219 90 PFFSNFGAIVTFAIFGTFLASMVMGIPVSV 119 (149)
Q Consensus 90 ~FF~N~g~Il~fAvlGT~is~~~ig~~~y~ 119 (149)
.+.+.-..+...|..+..+++.+.+...|.
T Consensus 79 ~l~~~~~~~~~~g~~~v~~t~~~~~~~~~~ 108 (601)
T PRK03659 79 KLWQLRRSIFGVGAAQVLLSAAVLAGLLML 108 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777877888888888888888776665554
No 23
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=26.11 E-value=91 Score=22.63 Aligned_cols=26 Identities=19% Similarity=0.431 Sum_probs=18.6
Q ss_pred cchhHH--HHHHHHHHHHHHHHHHHHHH
Q 036219 93 SNFGAI--VTFAIFGTFLASMVMGIPVS 118 (149)
Q Consensus 93 ~N~g~I--l~fAvlGT~is~~~ig~~~y 118 (149)
+|+--+ -..+.+||+.+++++++.=-
T Consensus 67 Knir~~KmwilGlvgTi~gsliia~lr~ 94 (98)
T PF11166_consen 67 KNIRDIKMWILGLVGTIFGSLIIALLRT 94 (98)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445443 25678999999999987643
No 24
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=25.48 E-value=3.1e+02 Score=23.88 Aligned_cols=39 Identities=15% Similarity=0.217 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhhc----cccccCcchhhhhhhhhhhheecccc
Q 036219 20 VLSFVLGHVLRRH----KFYYLPEASASLLIGLSVGALANISN 58 (149)
Q Consensus 20 ~~~~~~~~~l~~~----~~~~lpEs~~~il~Gli~G~il~~~~ 58 (149)
.+..+++.++|+| +-.++|+|...-+++.+++..++...
T Consensus 13 ~ilLliG~~Lr~ki~~lqk~~IPasvIgGli~~il~~~l~~~~ 55 (368)
T PF03616_consen 13 SILLLIGKFLRAKIPFLQKLFIPASVIGGLIFAILPLILGGFG 55 (368)
T ss_pred HHHHHHHHHHHHHhHHHHHccCCchHHHHHHHHHHHHHHHhcC
Confidence 3444456666654 34789999999888888766655443
No 25
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=22.74 E-value=1e+02 Score=22.61 Aligned_cols=14 Identities=21% Similarity=0.076 Sum_probs=5.9
Q ss_pred HHHHHHHHHhhccc
Q 036219 21 LSFVLGHVLRRHKF 34 (149)
Q Consensus 21 ~~~~~~~~l~~~~~ 34 (149)
+.+++....++||.
T Consensus 14 l~~~~~~~~~rRR~ 27 (130)
T PF12273_consen 14 LFLFLFYCHNRRRR 27 (130)
T ss_pred HHHHHHHHHHHHHh
Confidence 33344444444443
No 26
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=22.31 E-value=1.4e+02 Score=18.25 Aligned_cols=28 Identities=14% Similarity=0.132 Sum_probs=20.3
Q ss_pred chhhhcchhHHHHHHHHHHHHHHHHHHH
Q 036219 88 QKPFFSNFGAIVTFAIFGTFLASMVMGI 115 (149)
Q Consensus 88 k~~FF~N~g~Il~fAvlGT~is~~~ig~ 115 (149)
-|+|+||-.++....++..++-..++|-
T Consensus 9 ~~~f~~nk~a~~gl~il~~~vl~ai~~p 36 (56)
T PF12911_consen 9 WRRFRRNKLAVIGLIILLILVLLAIFAP 36 (56)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence 5789999998887777766665555443
No 27
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=21.48 E-value=1.8e+02 Score=26.24 Aligned_cols=86 Identities=12% Similarity=0.119 Sum_probs=47.5
Q ss_pred HHHHhhccccccCcchhhhhhhhhhhheec-cccCCccccc--cc-------cccccceeecccccchhhhc-chhhhcc
Q 036219 26 GHVLRRHKFYYLPEASASLLIGLSVGALAN-ISNTETNIRY--SF-------SFNELICSSATCLVMILFSW-QKPFFSN 94 (149)
Q Consensus 26 ~~~l~~~~~~~lpEs~~~il~Gli~G~il~-~~~~~~~i~~--~~-------~f~~~iFF~~~LLPPIGy~l-k~~FF~N 94 (149)
+-++|.+- ++.|+.++.+.|+++|-... ..++ .+..+ .+ .+.-|+|-. +-.+ |+++-+|
T Consensus 29 S~yikekL--llgEa~va~itGlI~Gphvlnlfdp-~~wgn~d~it~ei~RvvLcvqvfav-------a~eLPr~Y~l~~ 98 (467)
T KOG4505|consen 29 SLYIKEKL--LLGEATVAVITGLIFGPHVLNLFDP-NSWGNKDYITYEISRVVLCVQVFAV-------AMELPRAYMLEH 98 (467)
T ss_pred HHHHHHhH--hccchHHhhhhheeechhhhhhcCC-ccccCcchhhhhhhhhhHhHHHHHH-------HHhccHHHHHHH
Confidence 34455544 89999999999999998553 3332 11111 11 111122211 7788 8888899
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036219 95 FGAIVTFAIFGTFLASMVMGIPVSVLF 121 (149)
Q Consensus 95 ~g~Il~fAvlGT~is~~~ig~~~y~~~ 121 (149)
.-+|...-.-=-.+-.+++++.+|.+-
T Consensus 99 w~Si~vlllpVmi~gwlvs~~fvy~l~ 125 (467)
T KOG4505|consen 99 WRSIFVLLLPVMIIGWLVSFGFVYALI 125 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888653321111223344455666543
No 28
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=20.63 E-value=5.1e+02 Score=25.17 Aligned_cols=89 Identities=12% Similarity=0.089 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHhhccccccCcchhhhhhhhhhhheeccccCC--------cccccccccccc---ceeecccccchh
Q 036219 16 IMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLSVGALANISNTE--------TNIRYSFSFNEL---ICSSATCLVMIL 84 (149)
Q Consensus 16 i~lL~~~~~~~~~l~~~~~~~lpEs~~~il~Gli~G~il~~~~~~--------~~i~~~~~f~~~---iFF~~~LLPPIG 84 (149)
.++++++.+..+.+|+.| .|.-..-++.|+++|--.....++ ++ .+.+..=.+ +|+.+ =+|
T Consensus 49 ~lil~~a~l~~~ll~rl~---~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp~~~-~~~l~~la~lGlillmF----liG 120 (832)
T PLN03159 49 TLVVVTTRLLVFILKPFR---QPRVISEILGGVILGPSVLGQSEVFANTIFPLRS-VMVLETMANLGLLYFLF----LVG 120 (832)
T ss_pred HHHHHHHHHHHHHHHhcC---CChhHHHHHHHHhcCHhhhCcChhhhhhcCCcch-HHHHHHHHHHHHHHHHH----HHH
Confidence 455566777777777655 455566677788887532211110 00 000111111 12222 118
Q ss_pred hhc-chhhhcchhHHHHHHHHHHHHHHHH
Q 036219 85 FSW-QKPFFSNFGAIVTFAIFGTFLASMV 112 (149)
Q Consensus 85 y~l-k~~FF~N~g~Il~fAvlGT~is~~~ 112 (149)
..+ -+.+.||-...+..|..|.++....
T Consensus 121 LE~Dl~~lr~~~k~a~~ia~~~~ilpf~l 149 (832)
T PLN03159 121 VEMDISVIRRTGKKALAIAIAGMALPFCI 149 (832)
T ss_pred HcCcHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 889 7888899888888888887776554
No 29
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=20.10 E-value=1.7e+02 Score=21.04 Aligned_cols=40 Identities=23% Similarity=0.381 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhhcc---ccccCcchhhhhhhhhhhheeccccC
Q 036219 18 MLVLSFVLGHVLRRHK---FYYLPEASASLLIGLSVGALANISNT 59 (149)
Q Consensus 18 lL~~~~~~~~~l~~~~---~~~lpEs~~~il~Gli~G~il~~~~~ 59 (149)
+..++-++...+|+.+ -+|+|- +.+.+|+++|.+......
T Consensus 14 ~~ii~~~lVq~IkkT~~v~~K~iPl--Is~viGilLG~~~~~~~~ 56 (93)
T PF06946_consen 14 LSIITPALVQAIKKTKVVPNKWIPL--ISVVIGILLGAAAYPLTG 56 (93)
T ss_pred HHHHHHHHHHHHHHhccCCcchhhH--HHHHHHHHHHHHhhhcCC
Confidence 3344444566666543 378875 455689999998876554
Done!