Query 036219
Match_columns 149
No_of_seqs 104 out of 467
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 18:10:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036219.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036219hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1y4e_A Sodium/hydrogen exchang 98.1 4.8E-07 1.6E-11 50.4 0.1 21 69-90 2-27 (27)
2 2l34_A TYRO protein tyrosine k 24.1 68 0.0023 17.8 2.6 20 103-122 13-32 (33)
3 1ymm_C MBP peptide, HLA class 21.7 17 0.00058 19.4 -0.2 8 90-97 6-13 (26)
4 3hzq_A Large-conductance mecha 15.0 1.5E+02 0.0052 21.0 3.4 74 36-122 29-105 (114)
5 2oar_A Large-conductance mecha 12.0 1.7E+02 0.006 22.2 3.2 19 102-120 94-112 (174)
6 4ezc_A UREA transporter 1; mem 10.3 4.6E+02 0.016 22.1 5.6 47 91-139 296-342 (384)
7 2k1e_A Water soluble analogue 10.1 3.8E+02 0.013 17.4 4.4 30 3-32 3-32 (103)
8 2l0e_A Sodium/hydrogen exchang 10.0 23 0.0008 19.7 -1.8 11 137-147 5-15 (33)
9 3k3f_A UREA transporter; membr 9.0 5E+02 0.017 21.4 5.2 40 98-139 102-141 (340)
10 2ks1_B Epidermal growth factor 9.0 3E+02 0.01 16.0 2.9 14 21-34 27-40 (44)
No 1
>1y4e_A Sodium/hydrogen exchanger 1; NHE1 isoform, transmembrane, membrane protein; HET: HSL; NMR {Homo sapiens}
Probab=98.08 E-value=4.8e-07 Score=50.43 Aligned_cols=21 Identities=10% Similarity=-0.066 Sum_probs=19.1
Q ss_pred ccccceeecccccch----hhhc-chh
Q 036219 69 FNELICSSATCLVMI----LFSW-QKP 90 (149)
Q Consensus 69 f~~~iFF~~~LLPPI----Gy~l-k~~ 90 (149)
|+|++||++ ||||| ||+| +|+
T Consensus 2 ~~~~~FF~~-LLPPII~~aGy~l~~r~ 27 (27)
T 1y4e_A 2 LQSDVFFLF-LLPPIILDAGYFLPLRX 27 (27)
T ss_dssp CCSCSSHHH-HSCCSSHHHHTTGGGGC
T ss_pred Cccceeeee-ccCccEeeccccccCCC
Confidence 789999999 99999 9999 763
No 2
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=24.09 E-value=68 Score=17.81 Aligned_cols=20 Identities=15% Similarity=0.361 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 036219 103 IFGTFLASMVMGIPVSVLFL 122 (149)
Q Consensus 103 vlGT~is~~~ig~~~y~~~~ 122 (149)
++|.+..+..++...|.++|
T Consensus 13 Vvgdi~~t~~i~~~vy~~~r 32 (33)
T 2l34_A 13 VVGDLVLTVLIALAVYFLGR 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHCC
T ss_pred eHHHHHHHHHHHHHHhheec
Confidence 57888888899999998765
No 3
>1ymm_C MBP peptide, HLA class II histocompatibility antigen, DR beta; protein-protein complex, T cell repertoire, auto-immunity, I system; HET: NAG; 3.50A {Homo sapiens}
Probab=21.72 E-value=17 Score=19.44 Aligned_cols=8 Identities=38% Similarity=0.630 Sum_probs=5.8
Q ss_pred hhhcchhH
Q 036219 90 PFFSNFGA 97 (149)
Q Consensus 90 ~FF~N~g~ 97 (149)
+||+|+-+
T Consensus 6 HFFKNivs 13 (26)
T 1ymm_C 6 HFFKNIVT 13 (26)
T ss_pred hhhhhccC
Confidence 78888743
No 4
>3hzq_A Large-conductance mechanosensitive channel; intermediate state mechanosensitive channel osmoregulation, cell membrane, ION transport; 3.82A {Staphylococcus aureus subsp}
Probab=15.03 E-value=1.5e+02 Score=20.99 Aligned_cols=74 Identities=15% Similarity=0.113 Sum_probs=41.1
Q ss_pred ccCcchhhhhhhhhhhheeccccCCccccccccccccceeecccccchhhhc-chhhhcch--hHHHHHHHHHHHHHHHH
Q 036219 36 YLPEASASLLIGLSVGALANISNTETNIRYSFSFNELICSSATCLVMILFSW-QKPFFSNF--GAIVTFAIFGTFLASMV 112 (149)
Q Consensus 36 ~lpEs~~~il~Gli~G~il~~~~~~~~i~~~~~f~~~iFF~~~LLPPIGy~l-k~~FF~N~--g~Il~fAvlGT~is~~~ 112 (149)
....-.+.+.+|+++|.-....-+ ++-.+ + +.||||.-. ..+|-+|. .++..=+++.+++++++
T Consensus 29 i~rGNViDLAVgVIIG~AF~~IV~--------SlV~d----I-ImPlIg~l~gg~df~~~l~~~~i~yG~Fi~avInFlI 95 (114)
T 3hzq_A 29 ALKGNVLDLAIAVVMGAAFNKIIC--------SLVEN----I-IMPLIGKIFGSVDFAKEWSFWGIKYGLFIQSVIDFII 95 (114)
T ss_dssp SSCCTTHHHHHHHHHHHHHHHHHH--------HHHHH----T-HHHHHHHSSSCSCCCTTCCCSSCCCTHHHHHHHHHHH
T ss_pred HhcCChHHHHHHHHHHHHHHHHHH--------HHHHH----H-HHHHHHHHcCCCCcccCeeeeeeeHHHHHHHHHHHHH
Confidence 344455566667766654432211 12121 2 677775443 33322122 22333348899999999
Q ss_pred HHHHHHHHHh
Q 036219 113 MGIPVSVLFL 122 (149)
Q Consensus 113 ig~~~y~~~~ 122 (149)
++..+|.+-+
T Consensus 96 iA~viF~~vk 105 (114)
T 3hzq_A 96 IAFALFIFVK 105 (114)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998765
No 5
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=12.05 E-value=1.7e+02 Score=22.17 Aligned_cols=19 Identities=11% Similarity=0.293 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 036219 102 AIFGTFLASMVMGIPVSVL 120 (149)
Q Consensus 102 AvlGT~is~~~ig~~~y~~ 120 (149)
+++.+++++++++..+|++
T Consensus 94 ~Fi~avInFlIIA~vIYFl 112 (174)
T 2oar_A 94 VLLSAAINFFLIAFAVYFL 112 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4889999999999999764
No 6
>4ezc_A UREA transporter 1; membrane protein, channel, SLC14, structural genomics, PSI-biology, NEW YORK consortium on membrane PROT structure, nycomps; HET: BGC BOG SPL; 2.36A {Bos taurus} PDB: 4ezd_A*
Probab=10.30 E-value=4.6e+02 Score=22.06 Aligned_cols=47 Identities=9% Similarity=0.027 Sum_probs=34.4
Q ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHH
Q 036219 91 FFSNFGAIVTFAIFGTFLASMVMGIPVSVLFLLCSSFCFWAIPMIWICM 139 (149)
Q Consensus 91 FF~N~g~Il~fAvlGT~is~~~ig~~~y~~~~~gl~~~~~~~~~~~~c~ 139 (149)
|++.-..-..+|++|.+.++.+.......+...|+. ....|++.-+.
T Consensus 296 F~~~~~~s~llai~~a~ls~~l~~al~~~l~~~gLP--~lT~PFvl~tw 342 (384)
T 4ezc_A 296 FMALTWQTHLLALACALFTAYLGASMSHVMAVVGLP--SGTWPFCLATL 342 (384)
T ss_dssp SBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC--CTTHHHHHHHH
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--cccHhHHHHHH
Confidence 444333445679999999999988888888888886 56788774443
No 7
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=10.14 E-value=3.8e+02 Score=17.35 Aligned_cols=30 Identities=7% Similarity=-0.176 Sum_probs=17.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 036219 3 KEQQATGVGIILQIMMLVLSFVLGHVLRRH 32 (149)
Q Consensus 3 ~~~~~~s~~ll~~i~lL~~~~~~~~~l~~~ 32 (149)
++||..-..+..++.++++.....|.+++.
T Consensus 3 ~~~r~~l~~~~~~~~~~~~~a~~~~~~E~~ 32 (103)
T 2k1e_A 3 DHEREAQKAEEELQKVLEEASKKAVEAERG 32 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Confidence 455555555566666666666666666654
No 8
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}
Probab=10.03 E-value=23 Score=19.71 Aligned_cols=11 Identities=9% Similarity=-0.049 Sum_probs=8.8
Q ss_pred HHHhhhhhccc
Q 036219 137 ICMWLKFEVSS 147 (149)
Q Consensus 137 ~c~~~~~~~~~ 147 (149)
+|++||+-+|.
T Consensus 5 ~~llfGAiis~ 15 (33)
T 2l0e_A 5 DNLLFGSIISA 15 (33)
T ss_dssp CCCTTHHHHTT
T ss_pred HHHHHHHHccC
Confidence 78889987764
No 9
>3k3f_A UREA transporter; membrane protein, channel, TRAN protein, structural genomics, PSI-2; 2.30A {Desulfovibrio vulgaris} PDB: 3k3g_A 3m6e_A 3me1_A
Probab=8.99 E-value=5e+02 Score=21.35 Aligned_cols=40 Identities=8% Similarity=0.163 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHH
Q 036219 98 IVTFAIFGTFLASMVMGIPVSVLFLLCSSFCFWAIPMIWICM 139 (149)
Q Consensus 98 Il~fAvlGT~is~~~ig~~~y~~~~~gl~~~~~~~~~~~~c~ 139 (149)
-.++.++|+..++.+.........+.|+. .+..|++.-|.
T Consensus 102 ~~~l~i~~~~ls~~v~~~l~~~l~~~~lP--~lT~PFvl~tw 141 (340)
T 3k3f_A 102 MLGYVALNGAFTTIIMASLLNFLGKWGVP--ALTAPFVLATW 141 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTCC--CTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCc--eecHHHHHHHH
Confidence 34566889999998888888888888886 67888885544
No 10
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=8.97 E-value=3e+02 Score=16.03 Aligned_cols=14 Identities=21% Similarity=0.563 Sum_probs=7.6
Q ss_pred HHHHHHHHHhhccc
Q 036219 21 LSFVLGHVLRRHKF 34 (149)
Q Consensus 21 ~~~~~~~~l~~~~~ 34 (149)
+.....+++++++.
T Consensus 27 i~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 27 VALGIGLFMRRRHI 40 (44)
T ss_dssp HHHHHHHHHHTTTC
T ss_pred HHHHHHHHhhhhHh
Confidence 33445566666654
Done!