Query 036219
Match_columns 149
No_of_seqs 104 out of 467
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 18:11:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036219.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/036219hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2oara1 f.16.1.1 (A:10-118) Ga 10.6 1.1E+02 0.0077 19.6 3.2 20 102-121 62-81 (109)
2 d2iuba2 f.17.3.1 (A:286-349) M 9.9 54 0.0039 18.7 1.3 16 18-33 49-64 (64)
3 d2h8pc1 f.14.1.1 (C:22-78) Pot 5.8 2.6E+02 0.019 15.5 4.4 29 4-32 4-32 (57)
4 d3cx5d2 f.23.11.1 (D:261-307) 5.2 1.8E+02 0.013 16.0 2.0 9 25-33 23-31 (47)
5 d2axtc1 f.55.1.1 (C:27-473) Ph 3.3 5.2E+02 0.038 20.3 4.0 32 88-119 235-266 (447)
6 d1v54k_ f.23.5.1 (K:) Mitochon 2.6 5.1E+02 0.037 14.1 3.5 33 91-128 4-36 (49)
7 d1ppjd2 f.23.11.1 (D:196-241) 2.5 5.1E+02 0.037 13.7 4.7 9 25-33 23-31 (46)
8 d1r3jc_ f.14.1.1 (C:) Potassiu 2.1 7.1E+02 0.052 14.3 4.4 26 6-31 6-31 (103)
9 g1h6w.2 d.231.1.1 (A:328-396,B 2.0 2.6E+02 0.019 16.7 0.5 27 81-107 28-55 (79)
10 d1fm0d_ d.15.3.1 (D:) Molybdop 2.0 2E+02 0.015 16.5 -0.1 6 79-84 74-80 (81)
No 1
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=10.58 E-value=1.1e+02 Score=19.64 Aligned_cols=20 Identities=10% Similarity=0.280 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 036219 102 AIFGTFLASMVMGIPVSVLF 121 (149)
Q Consensus 102 AvlGT~is~~~ig~~~y~~~ 121 (149)
+++.+.+++++++..+|++-
T Consensus 62 ~fi~a~InFlIiA~vv~F~v 81 (109)
T d2oara1 62 VLLSAAINFFLIAFAVYFLV 81 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999887754
No 2
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=9.87 E-value=54 Score=18.65 Aligned_cols=16 Identities=19% Similarity=0.376 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHhhcc
Q 036219 18 MLVLSFVLGHVLRRHK 33 (149)
Q Consensus 18 lL~~~~~~~~~l~~~~ 33 (149)
++.++....+++|++|
T Consensus 49 ~~~~~~~~~~~f~rkk 64 (64)
T d2iuba2 49 MGVIAVIMVVYFKKKK 64 (64)
T ss_dssp HHHHHHHHHTTTTSCC
T ss_pred HHHHHHHHHHHHhccC
Confidence 3344444555555544
No 3
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=5.76 E-value=2.6e+02 Score=15.53 Aligned_cols=29 Identities=21% Similarity=0.339 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 036219 4 EQQATGVGIILQIMMLVLSFVLGHVLRRH 32 (149)
Q Consensus 4 ~~~~~s~~ll~~i~lL~~~~~~~~~l~~~ 32 (149)
+-|+....++++..++++.-...|..++.
T Consensus 4 ~~R~~~~~~~~~~i~i~~~s~~~y~~E~~ 32 (57)
T d2h8pc1 4 HWRAAGAATVLLVIVLLAGSYLAVLAERG 32 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34566666666666667777777888764
No 4
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.24 E-value=1.8e+02 Score=15.97 Aligned_cols=9 Identities=22% Similarity=0.368 Sum_probs=4.4
Q ss_pred HHHHHhhcc
Q 036219 25 LGHVLRRHK 33 (149)
Q Consensus 25 ~~~~l~~~~ 33 (149)
..++.||++
T Consensus 23 ~~~y~KR~k 31 (47)
T d3cx5d2 23 LSIWVKKFK 31 (47)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 444555544
No 5
>d2axtc1 f.55.1.1 (C:27-473) Photosystem II CP43 protein PsbC {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.26 E-value=5.2e+02 Score=20.32 Aligned_cols=32 Identities=9% Similarity=0.106 Sum_probs=28.4
Q ss_pred chhhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 036219 88 QKPFFSNFGAIVTFAIFGTFLASMVMGIPVSV 119 (149)
Q Consensus 88 k~~FF~N~g~Il~fAvlGT~is~~~ig~~~y~ 119 (149)
+|.+.-|.-+++.|++-|-.+.+++.+.-+|.
T Consensus 235 ~r~~~~s~EavLSySLaav~~~afiaA~~~wy 266 (447)
T d2axtc1 235 RRAFIWSGEAYLSYSLGALSMMGFIATCFVWF 266 (447)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhccchHHHHHHHHHHHHHHHHHHhhheee
Confidence 67789999999999999999999998888775
No 6
>d1v54k_ f.23.5.1 (K:) Mitochondrial cytochrome c oxidase subunit VIIb {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.64 E-value=5.1e+02 Score=14.06 Aligned_cols=33 Identities=15% Similarity=0.297 Sum_probs=21.9
Q ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 036219 91 FFSNFGAIVTFAIFGTFLASMVMGIPVSVLFLLCSSFC 128 (149)
Q Consensus 91 FF~N~g~Il~fAvlGT~is~~~ig~~~y~~~~~gl~~~ 128 (149)
|=+.-|+.++.+ |+ ++.++.=.|...|+|+.|-
T Consensus 4 FHdKYGn~vL~~--Ga---~fc~avW~yv~TQ~gI~Wn 36 (49)
T d1v54k_ 4 FHDKYGNAVLAS--GA---TFCVAVWVYMATQIGIEWN 36 (49)
T ss_dssp HHHHHHHHHHHH--HH---HHHHHHHHHHHHHSCCCCC
T ss_pred cccccCcEEEec--cc---chhhhhhhheeeeeeeeec
Confidence 444557777766 64 3444566788899999864
No 7
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.49 E-value=5.1e+02 Score=13.67 Aligned_cols=9 Identities=44% Similarity=0.667 Sum_probs=3.9
Q ss_pred HHHHHhhcc
Q 036219 25 LGHVLRRHK 33 (149)
Q Consensus 25 ~~~~l~~~~ 33 (149)
+.|+.+|++
T Consensus 23 l~yy~KR~~ 31 (46)
T d1ppjd2 23 LVYAMKRHK 31 (46)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 344444443
No 8
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=2.05 E-value=7.1e+02 Score=14.28 Aligned_cols=26 Identities=23% Similarity=0.425 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036219 6 QATGVGIILQIMMLVLSFVLGHVLRR 31 (149)
Q Consensus 6 ~~~s~~ll~~i~lL~~~~~~~~~l~~ 31 (149)
|..+..+.++++.++......|..++
T Consensus 6 r~~~~~~~~~~~~~~~~s~~~~~~e~ 31 (103)
T d1r3jc_ 6 RAAGAATVLLVIVLLAGSYLAVLAER 31 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444555555555555555555554
No 9
>g1h6w.2 d.231.1.1 (A:328-396,B:518-527) Receptor-binding domain of short tail fibre protein gp12 {Bacteriophage T4 [TaxId: 10665]}
Probab=2.04 E-value=2.6e+02 Score=16.67 Aligned_cols=27 Identities=11% Similarity=-0.053 Sum_probs=13.4
Q ss_pred cchhhhc-chhhhcchhHHHHHHHHHHH
Q 036219 81 VMILFSW-QKPFFSNFGAIVTFAIFGTF 107 (149)
Q Consensus 81 PPIGy~l-k~~FF~N~g~Il~fAvlGT~ 107 (149)
||-||-+ .-.-.+.-..=.+|+++||.
T Consensus 28 pp~GWl~CdG~~l~~~~Yp~Lf~~IGt~ 55 (79)
T g1h6w.2 28 PSDAWRFCHGGTVSASDCPLYASRIGTR 55 (79)
T ss_dssp SCTTEEESBSCBCCTTTCHHHHHHHTTT
T ss_pred CCcCcEeeCCeeCCHhHCHHHHHHhCcc
Confidence 4444444 33333333444677777763
No 10
>d1fm0d_ d.15.3.1 (D:) Molybdopterin synthase subunit MoaD {Escherichia coli [TaxId: 562]}
Probab=2.04 E-value=2e+02 Score=16.45 Aligned_cols=6 Identities=0% Similarity=-0.236 Sum_probs=0.0
Q ss_pred cccch-h
Q 036219 79 CLVMI-L 84 (149)
Q Consensus 79 LLPPI-G 84 (149)
++||. |
T Consensus 74 i~PPVsG 80 (81)
T d1fm0d_ 74 FFPPVTG 80 (81)
T ss_dssp EECCCCC
T ss_pred EECCCCC
Done!