RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 036219
(149 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.006
Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 14/62 (22%)
Query: 15 QIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLSVG---ALANISNTETNIRYSFSFNE 71
Q + ++ L+ +P + G S+G ALA++++ S
Sbjct: 1733 QPALTLMEKAAFEDLKSKGL--IPADAT--FAGHSLGEYAALASLAD-------VMSIES 1781
Query: 72 LI 73
L+
Sbjct: 1782 LV 1783
Score = 26.9 bits (59), Expect = 3.2
Identities = 33/159 (20%), Positives = 46/159 (28%), Gaps = 78/159 (49%)
Query: 18 MLVLSFVLGHVLRRHKFY---YLP-----------EASAS--LLI-GLS---VGALANIS 57
+ + F +G +R ++ Y LP E S L I L+ V N +
Sbjct: 299 AITVLFFIG--VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT 356
Query: 58 NTE--TNIRYSFS-FNELICSSATCLVM---------------------------ILFSW 87
N+ + S N A LV+ I FS
Sbjct: 357 NSHLPAGKQVEISLVN-----GAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE 411
Query: 88 QKPFFSNFGAIVTFAIFGTFLASMVMGIPVSVLF---LL 123
+K FSN FL PV+ F LL
Sbjct: 412 RKLKFSN-----------RFL-------PVASPFHSHLL 432
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.18
Identities = 8/47 (17%), Positives = 16/47 (34%), Gaps = 18/47 (38%)
Query: 4 EQQATGVGIILQIMMLVLSFVLGHVLRRHKFYYLPEASASLLIGLSV 50
E+Q + L S L Y +++ +L I ++
Sbjct: 18 EKQ--------ALKKLQASLKL----------YADDSAPALAIKATM 46
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.4 bits (65), Expect = 0.43
Identities = 16/103 (15%), Positives = 31/103 (30%), Gaps = 31/103 (30%)
Query: 37 LPEASAS---LLIGLSVGA-LANISNTETNIRYSFS--FNELICSSATCLVMILFSWQKP 90
LP + + + + + + T N ++ +I SS L + +K
Sbjct: 318 LPREVLTTNPRRLSI-IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY--RKM 374
Query: 91 FFSNFGAIVTFAIF--GTFLASMVMGIPVSVLFLLCSSFCFWA 131
F ++F IP +L L+ W
Sbjct: 375 FDR-------LSVFPPSA-------HIPTILLSLI------WF 397
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 26.6 bits (58), Expect = 3.3
Identities = 7/23 (30%), Positives = 12/23 (52%), Gaps = 3/23 (13%)
Query: 61 TNIRYSFSFNELICSSATC-LVM 82
I FS +++C+ C LV+
Sbjct: 32 PKIVERFSEGDVVCAL--CGLVL 52
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase,
P-type ATPase, membrane protein, hydrolase, aluminium
fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A
1iwc_A 1iwf_A
Length = 1034
Score = 26.5 bits (59), Expect = 4.5
Identities = 5/47 (10%), Positives = 16/47 (34%), Gaps = 16/47 (34%)
Query: 93 SNFGAIVTFAIFGTFLASMVMGIPVSVLFLLCSSFCFWAIPMIWICM 139
N + + L + + +P+ + I +++I +
Sbjct: 792 KNIPELTPY------LIYITVSVPLPLG----------CITILFIEL 822
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+
binding, haloacid dehydrogenease superfamily, phosphate
analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A
1mo8_A* 1q3i_A
Length = 1028
Score = 26.4 bits (59), Expect = 4.5
Identities = 7/47 (14%), Positives = 16/47 (34%), Gaps = 16/47 (34%)
Query: 93 SNFGAIVTFAIFGTFLASMVMGIPVSVLFLLCSSFCFWAIPMIWICM 139
SN I F L ++ +P+ + + ++ I +
Sbjct: 787 SNIPEITPF------LVFIIGNVPLPLG----------TVTILCIDL 817
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 25.6 bits (55), Expect = 9.0
Identities = 5/65 (7%), Positives = 20/65 (30%)
Query: 79 CLVMILFSWQKPFFSNFGAIVTFAIFGTFLASMVMGIPVSVLFLLCSSFCFWAIPMIWIC 138
++I W I+ + + + ++L + F + + +
Sbjct: 178 LFLLISACWVISLILGGLPIMGWNCISALSSCSTVLPLYHKHYILFCTTVFTLLLLSIVI 237
Query: 139 MWLKF 143
++ +
Sbjct: 238 LYCRI 242
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein,
membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY
C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB:
2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A*
1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A*
3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Length = 1057
Score = 25.6 bits (57), Expect = 9.0
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 98 IVTFAIFGTFLASMVMGIPVSVLF 121
+V + G LA+ G+ V F
Sbjct: 904 VVPLGVIGALLAATFRGLTNDVYF 927
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent,
transport, cell membrane, transmembrane, membrane
protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Length = 1052
Score = 25.6 bits (57), Expect = 9.6
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 98 IVTFAIFGTFLASMVMGIPVSVLF 121
+V + G LA+ + G+ V F
Sbjct: 903 VVPLGVIGALLATSMRGLSNDVFF 926
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.333 0.141 0.445
Gapped
Lambda K H
0.267 0.0537 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,179,221
Number of extensions: 112458
Number of successful extensions: 341
Number of sequences better than 10.0: 1
Number of HSP's gapped: 341
Number of HSP's successfully gapped: 23
Length of query: 149
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 64
Effective length of database: 4,328,508
Effective search space: 277024512
Effective search space used: 277024512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 53 (24.6 bits)