BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036220
(522 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase
From Cannabis Sativa
Length = 518
Score = 454 bits (1168), Expect = e-128, Method: Compositional matrix adjust.
Identities = 227/476 (47%), Positives = 324/476 (68%), Gaps = 15/476 (3%)
Query: 51 QNLRYLVPSMPKPEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETP 110
QNLR++ + PKP I TP +H+QA ++C K++G+ +R RSGGHD EG+SY+S+ P
Sbjct: 42 QNLRFISDTTPKPLVIVTPSNNSHIQATILCSKKVGLQIRTRSGGHDAEGMSYISQV--P 99
Query: 111 FIIVDLAKLRSVKVDIDDNSAWVQAGATIGEVYYRISEKSKTHGFPAGLCTSLGVGGHIT 170
F++VDL + S+K+D+ +AWV+AGAT+GEVYY I+EK++ FP G C ++GVGGH +
Sbjct: 100 FVVVDLRNMHSIKIDVHSQTAWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFS 159
Query: 171 GGAYGSMMRKYGLGADNVVDARIVDASGRILDREAMGEDFFWAIRGGGGASFGVILAWKI 230
GG YG++MR YGL ADN++DA +V+ G++LDR++MGED FWAIRGGGG +FG+I AWKI
Sbjct: 160 GGGYGALMRNYGLAADNIIDAHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKI 219
Query: 231 KLXXXXXXXXXXXXXXXLE-QCATKLLHRWQEVADKLDEDLFIR---VIIQVANAGPKGE 286
KL +E KL ++WQ +A K D+DL + + + + K +
Sbjct: 220 KLVAVPSKSTIFSVKKNMEIHGLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNK 279
Query: 287 KTVTTSYNSLFLGGAERLLKVVEESFPELGLTKKDCTETSWIKSVLYIAGY----PSNTP 342
TV ++S+F GG + L+ ++ +SFPELG+ K DC E SWI + ++ +G +N
Sbjct: 280 TTVHGYFSSIFHGGVDSLVDLMNKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFK 339
Query: 343 PEVLLQGKSLFKNYFKAKSDFVKDPIPETALEGLWKRLLGED--SPLMIWTPYGGMMSKI 400
E+LL + K F K D+VK PIPETA+ + ++L ED + + + PYGG+M +I
Sbjct: 340 KEILLDRSAGKKTAFSIKLDYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEI 399
Query: 401 SESEIPFPHRKGTLFKIQYVSTWQDGEKNATKHIDWIRRLYNYMGPYVSMLPRAAYVNYR 460
SES IPFPHR G ++++ Y ++W+ E N KHI+W+R +YN+ PYVS PR AY+NYR
Sbjct: 400 SESAIPFPHRAGIMYELWYTASWEKQEDNE-KHINWVRSVYNFTTPYVSQNPRLAYLNYR 458
Query: 461 DLDLGMNKNGS--SFIKSSVWGYKYFKDNFNRLVKVKTKVDPDNFFRHEQSIPPLP 514
DLDLG + S ++ ++ +WG KYF NFNRLVKVKTKVDP+NFFR+EQSIPPLP
Sbjct: 459 DLDLGKTNHASPNNYTQARIWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLP 514
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
pdb|4DNS|B Chain B, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
Length = 497
Score = 414 bits (1064), Expect = e-116, Method: Compositional matrix adjust.
Identities = 217/466 (46%), Positives = 302/466 (64%), Gaps = 15/466 (3%)
Query: 51 QNLRYLVPSMPKPEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETP 110
+N+++L KP +I TP +H+QAAV+C + G+ +RVRSGGHDYEGLSY SE P
Sbjct: 43 RNIKFLSDKTVKPLYIITPTNASHIQAAVVCGRRHGMRIRVRSGGHDYEGLSYRSEKPEP 102
Query: 111 FIIVDLAKLRSVKVDIDDNSAWVQAGATIGEVYYRISEKSKTHGFPAGLCTSLGVGGHIT 170
F +VD+ K+R+V +D +AWV +GA +G++YY I++ S GFPAG+CT++GVGGH +
Sbjct: 103 FAVVDMNKMRAVSIDGKAATAWVDSGAQLGDLYYGIAKASPKLGFPAGVCTTIGVGGHFS 162
Query: 171 GGAYGSMMRKYGLGADNVVDARIVDASGRILDREAMGEDFFWAIRGGGGASFGVILAWKI 230
GG +G ++RKYG ADNV+DA++VDA GR+LDR+AMGED FWAIRGGGG SFG++ +W++
Sbjct: 163 GGGFGMLLRKYGTAADNVIDAKVVDAQGRLLDRKAMGEDHFWAIRGGGGESFGIVASWQV 222
Query: 231 KLXXXXXXXXXXXXXXXLEQCATKLLHRWQEVADKLDEDLFIRVIIQVANAGPKGEKTVT 290
KL +++ A L+ +WQ VA L +DL IR++ A
Sbjct: 223 KLLPVPPKVTVFQVHKGIKEGAIDLVTKWQTVAPALPDDLMIRIMAMGQGA--------- 273
Query: 291 TSYNSLFLGGAERLLKVVEESFPELGLTKKDCTETSWIKSVLYIAGYPSNTPPEVLLQGK 350
+ +L+LG + L+ ++ FPELG+ C E +WI+SV YI P T + LL
Sbjct: 274 -MFEALYLGTCKDLVLLMTARFPELGMNATHCKEMTWIESVPYIPMGPKGTVRD-LLNRT 331
Query: 351 SLFKNYFKAKSDFVKDPIPETALEGLWKRLLGEDSPLMIWTPYGGMMSKISESEIPFPHR 410
S K + K KSD+V +PIP++ E ++ L+ + +MI PYGG ++ + ES PFP R
Sbjct: 332 SNIKAFGKYKSDYVLEPIPKSDWEKIFTWLVKPGAGVMIMDPYGGGIASVPESATPFPRR 391
Query: 411 KGTLFKIQYVSTWQDGEKNATKHIDWIRRLYNYMGPYVSMLPRAAYVNYRDLDLGMNK-- 468
G LF IQYV W GE A W R +Y++M PYVS PR AYVNYRDLDLG+N+
Sbjct: 392 SGVLFNIQYVVYWF-GEGAAALPTQWTRDIYDFMTPYVSKNPRQAYVNYRDLDLGVNQVV 450
Query: 469 -NGSSFIKSSVWGYKYFKDNFNRLVKVKTKVDPDNFFRHEQSIPPL 513
N S++ VWG KYFK NF RL + K K+DP+++FR+EQSIPPL
Sbjct: 451 GNVSTYASGKVWGEKYFKGNFERLARTKGKIDPEDYFRNEQSIPPL 496
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|B Chain B, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
Length = 500
Score = 390 bits (1003), Expect = e-109, Method: Compositional matrix adjust.
Identities = 205/467 (43%), Positives = 294/467 (62%), Gaps = 15/467 (3%)
Query: 51 QNLRYLVPSMPKPEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETP 110
+N R+ P KP +I TP +H+Q+AV+C + V +RVRSGGHDYEGLSY S
Sbjct: 41 RNSRWSSPDNVKPLYIITPTQVSHIQSAVVCGRRHSVRIRVRSGGHDYEGLSYRSLQPET 100
Query: 111 FIIVDLAKLRSVKVDIDDNSAWVQAGATIGEVYYRISEKSKTHGFPAGLCTSLGVGGHIT 170
F +VDL K+R+V VD +AWV +GA +GE+YY I + S T FPAG+C ++GVGG+
Sbjct: 101 FAVVDLNKMRAVWVDGKARTAWVDSGAQLGELYYAIYKASPTLAFPAGVCPTIGVGGNFA 160
Query: 171 GGAYGSMMRKYGLGADNVVDARIVDASGRILDREAMGEDFFWAIRGGGGASFGVILAWKI 230
GG +G ++RKYG+ A+NV+D ++VDA+G++ D+++MG+D FWA+RGGGG SFG+++AW++
Sbjct: 161 GGGFGMLLRKYGIAAENVIDVKLVDANGKLHDKKSMGDDHFWAVRGGGGESFGIVVAWQV 220
Query: 231 KLXXXXXXXXXXXXXXXLEQCATKLLHRWQEVADKLDEDLFIRVIIQVANAGPKGEKTVT 290
KL + + A ++++WQ VA +L DL IR+I Q GPK
Sbjct: 221 KLLPVPPTVTIFKISKTVSEGAVDIINKWQVVAPQLPADLMIRIIAQ----GPKA----- 271
Query: 291 TSYNSLFLGGAERLLKVVEESFPELGLTKKDCTETSWIKSVLYIAGYPSNTPPEVLLQGK 350
++ +++LG + L ++ FPELG+ C E SWI+S+ ++ + + LL +
Sbjct: 272 -TFEAMYLGTCKTLTPLMSSKFPELGMNPSHCNEMSWIQSIPFVHLGHRDALEDDLLNRQ 330
Query: 351 SLFKNYFKAKSDFVKDPIPETALEGLWKR-LLGEDSPLMIWTPYGGMMSKISESEIPFPH 409
+ FK + + KSD+V P P+T E + L+ + +MI+ PYG +S ES PFPH
Sbjct: 331 NSFKPFAEYKSDYVYQPFPKTVWEQILNTWLVKPGAGIMIFDPYGATISATPESATPFPH 390
Query: 410 RKGTLFKIQYVSTWQDGEKNATKHIDWIRRLYNYMGPYVSMLPRAAYVNYRDLDLGMNK- 468
RKG LF IQYV+ W A + W + +YNYM PYVS PR AY NYRD+DLG N+
Sbjct: 391 RKGVLFNIQYVNYWF-APGAAAAPLSWSKDIYNYMEPYVSKNPRQAYANYRDIDLGRNEV 449
Query: 469 --NGSSFIKSSVWGYKYFKDNFNRLVKVKTKVDPDNFFRHEQSIPPL 513
+ S++ VWG KYFK NF RL K KVDP ++FR+EQSIPPL
Sbjct: 450 VNDVSTYASGKVWGQKYFKGNFERLAITKGKVDPTDYFRNEQSIPPL 496
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Reticuline
pdb|3D2H|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Monoclinic Crystal Form
pdb|3D2J|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Tetragonal Crystal Form
Length = 538
Score = 335 bits (859), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 203/480 (42%), Positives = 281/480 (58%), Gaps = 36/480 (7%)
Query: 51 QNLRYLVPSMPKPEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETP 110
QN + + KP I P + + + C ++ +R+RSGGH YEGLSY S+T P
Sbjct: 59 QNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDT--P 116
Query: 111 FIIVDLAKLRSVKVDIDDNSAWVQAGATIGEVYYRISEKSKTHGFPAGLCTSLGVGGHIT 170
FI++DL L V +D++ +AWV++G+T+GE+YY I+E S GF AG C ++G GGHI+
Sbjct: 117 FILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHIS 176
Query: 171 GGAYGSMMRKYGLGADNVVDARIVDASGRILDREAMGEDFFWAIRGGGGASFGVILAWKI 230
GG +G M RKYGL ADNVVDA ++DA+G ILDR+AMGED FWAIRGGGG +G I AWKI
Sbjct: 177 GGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKI 236
Query: 231 KLXXXXXXXXXXXXXXXLE-QCATKLLHRWQEVADKLDEDLFIRVIIQVANAGPKGEKTV 289
KL + AT LLH+WQ VA++L+ED + V+ G EK V
Sbjct: 237 KLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSVL------GGADEKQV 290
Query: 290 TTSYNSLFLGGAERLLKVVEES-----FPELGLTKKDCTETSWIKSVLYIAGYPSNTPPE 344
+ G LK V +S FPELGL ++D E SW +S Y+AG E
Sbjct: 291 WLTMLGFHFG-----LKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGL------E 339
Query: 345 VLLQGKSLFKNY----FKAKSDFVKDPIPETALEGLWKRLLGEDSPLMIWTPYGGMMSKI 400
+ Q + F + FK K D K+P+P A GL +RL E + + +GG MSKI
Sbjct: 340 TVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKI 399
Query: 401 SESEIPFPHRKGTLFKIQYVSTW-QDGEKNATKHIDWIRRLYNYMGPYVSMLPRAAYVNY 459
S PFPHR GT ++Y+ W Q +K T+ +DW+ ++Y +M P+VS PR YVN+
Sbjct: 400 SSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNH 459
Query: 460 RDLDL-GMNKNGSSFIKSSV-----WGYKYFKDNFNRLVKVKTKVDPDNFFRHEQSIPPL 513
DLDL G++ + + +++ WG YF N+ RL++ KT +DP+N F H QSIPP+
Sbjct: 460 IDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIPPM 519
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In
Complex With (S)-Reticuline
Length = 519
Score = 335 bits (859), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 202/480 (42%), Positives = 280/480 (58%), Gaps = 36/480 (7%)
Query: 51 QNLRYLVPSMPKPEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETP 110
QN + + KP I P + + + C ++ +R+RSGGH YEGLSY S+T P
Sbjct: 40 QNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDT--P 97
Query: 111 FIIVDLAKLRSVKVDIDDNSAWVQAGATIGEVYYRISEKSKTHGFPAGLCTSLGVGGHIT 170
FI++DL L V +D++ +AWV++G+T+GE+YY I+E S GF AG C ++G GG I+
Sbjct: 98 FILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGAIS 157
Query: 171 GGAYGSMMRKYGLGADNVVDARIVDASGRILDREAMGEDFFWAIRGGGGASFGVILAWKI 230
GG +G M RKYGL ADNVVDA ++DA+G ILDR+AMGED FWAIRGGGG +G I AWKI
Sbjct: 158 GGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKI 217
Query: 231 KLXXXXXXXXXXXXXXXLE-QCATKLLHRWQEVADKLDEDLFIRVIIQVANAGPKGEKTV 289
KL + AT LLH+WQ VA++L+ED + V+ G EK V
Sbjct: 218 KLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSVL------GGADEKQV 271
Query: 290 TTSYNSLFLGGAERLLKVVEES-----FPELGLTKKDCTETSWIKSVLYIAGYPSNTPPE 344
+ G LK V +S FPELGL ++D E SW +S Y+AG E
Sbjct: 272 WLTMLGFHFG-----LKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGL------E 320
Query: 345 VLLQGKSLFKNY----FKAKSDFVKDPIPETALEGLWKRLLGEDSPLMIWTPYGGMMSKI 400
+ Q + F + FK K D K+P+P A GL +RL E + + +GG MSKI
Sbjct: 321 TVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKI 380
Query: 401 SESEIPFPHRKGTLFKIQYVSTW-QDGEKNATKHIDWIRRLYNYMGPYVSMLPRAAYVNY 459
S PFPHR GT ++Y+ W Q +K T+ +DW+ ++Y +M P+VS PR YVN+
Sbjct: 381 SSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNH 440
Query: 460 RDLDL-GMNKNGSSFIKSSV-----WGYKYFKDNFNRLVKVKTKVDPDNFFRHEQSIPPL 513
DLDL G++ + + +++ WG YF N+ RL++ KT +DP+N F H QSIPP+
Sbjct: 441 IDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIPPM 500
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
Dehydroscoulerine
Length = 519
Score = 335 bits (859), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 203/480 (42%), Positives = 281/480 (58%), Gaps = 36/480 (7%)
Query: 51 QNLRYLVPSMPKPEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETP 110
QN + + KP I P + + + C ++ +R+RSGGH YEGLSY S+T P
Sbjct: 40 QNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDT--P 97
Query: 111 FIIVDLAKLRSVKVDIDDNSAWVQAGATIGEVYYRISEKSKTHGFPAGLCTSLGVGGHIT 170
FI++DL L V +D++ +AWV++G+T+GE+YY I+E S GF AG C ++G GGHI+
Sbjct: 98 FILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHIS 157
Query: 171 GGAYGSMMRKYGLGADNVVDARIVDASGRILDREAMGEDFFWAIRGGGGASFGVILAWKI 230
GG +G M RKYGL ADNVVDA ++DA+G ILDR+AMGED FWAIRGGGG +G I AWKI
Sbjct: 158 GGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKI 217
Query: 231 KLXXXXXXXXXXXXXXXLE-QCATKLLHRWQEVADKLDEDLFIRVIIQVANAGPKGEKTV 289
KL + AT LLH+WQ VA++L+ED + V+ G EK V
Sbjct: 218 KLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSVL------GGADEKQV 271
Query: 290 TTSYNSLFLGGAERLLKVVEES-----FPELGLTKKDCTETSWIKSVLYIAGYPSNTPPE 344
+ G LK V +S FPELGL ++D E SW +S Y+AG E
Sbjct: 272 WLTMLGFHFG-----LKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGL------E 320
Query: 345 VLLQGKSLFKNY----FKAKSDFVKDPIPETALEGLWKRLLGEDSPLMIWTPYGGMMSKI 400
+ Q + F + FK K D K+P+P A GL +RL E + + +GG MSKI
Sbjct: 321 TVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKI 380
Query: 401 SESEIPFPHRKGTLFKIQYVSTW-QDGEKNATKHIDWIRRLYNYMGPYVSMLPRAAYVNY 459
S PFPHR GT ++Y+ W Q +K T+ +DW+ ++Y +M P+VS PR YVN+
Sbjct: 381 SSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNH 440
Query: 460 RDLDL-GMNKNGSSFIKSSV-----WGYKYFKDNFNRLVKVKTKVDPDNFFRHEQSIPPL 513
DLDL G++ + + +++ WG YF N+ RL++ KT +DP+N F H QSIPP+
Sbjct: 441 IDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIPPM 500
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Scoulerine
Length = 495
Score = 335 bits (858), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 203/480 (42%), Positives = 281/480 (58%), Gaps = 36/480 (7%)
Query: 51 QNLRYLVPSMPKPEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETP 110
QN + + KP I P + + + C ++ +R+RSGGH YEGLSY S+T P
Sbjct: 34 QNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDT--P 91
Query: 111 FIIVDLAKLRSVKVDIDDNSAWVQAGATIGEVYYRISEKSKTHGFPAGLCTSLGVGGHIT 170
FI++DL L V +D++ +AWV++G+T+GE+YY I+E S GF AG C ++G GGHI+
Sbjct: 92 FILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHIS 151
Query: 171 GGAYGSMMRKYGLGADNVVDARIVDASGRILDREAMGEDFFWAIRGGGGASFGVILAWKI 230
GG +G M RKYGL ADNVVDA ++DA+G ILDR+AMGED FWAIRGGGG +G I AWKI
Sbjct: 152 GGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKI 211
Query: 231 KLXXXXXXXXXXXXXXXLE-QCATKLLHRWQEVADKLDEDLFIRVIIQVANAGPKGEKTV 289
KL + AT LLH+WQ VA++L+ED + V+ G EK V
Sbjct: 212 KLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSVL------GGADEKQV 265
Query: 290 TTSYNSLFLGGAERLLKVVEES-----FPELGLTKKDCTETSWIKSVLYIAGYPSNTPPE 344
+ G LK V +S FPELGL ++D E SW +S Y+AG E
Sbjct: 266 WLTMLGFHFG-----LKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGL------E 314
Query: 345 VLLQGKSLFKNY----FKAKSDFVKDPIPETALEGLWKRLLGEDSPLMIWTPYGGMMSKI 400
+ Q + F + FK K D K+P+P A GL +RL E + + +GG MSKI
Sbjct: 315 TVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKI 374
Query: 401 SESEIPFPHRKGTLFKIQYVSTW-QDGEKNATKHIDWIRRLYNYMGPYVSMLPRAAYVNY 459
S PFPHR GT ++Y+ W Q +K T+ +DW+ ++Y +M P+VS PR YVN+
Sbjct: 375 SSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNH 434
Query: 460 RDLDL-GMNKNGSSFIKSSV-----WGYKYFKDNFNRLVKVKTKVDPDNFFRHEQSIPPL 513
DLDL G++ + + +++ WG YF N+ RL++ KT +DP+N F H QSIPP+
Sbjct: 435 IDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIPPM 494
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant
Length = 495
Score = 331 bits (849), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 202/480 (42%), Positives = 280/480 (58%), Gaps = 36/480 (7%)
Query: 51 QNLRYLVPSMPKPEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETP 110
QN + + KP I P + + + C ++ +R+RSGGH YEGLSY S+T P
Sbjct: 34 QNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDT--P 91
Query: 111 FIIVDLAKLRSVKVDIDDNSAWVQAGATIGEVYYRISEKSKTHGFPAGLCTSLGVGGHIT 170
FI++DL L V +D++ +AWV++G+T+GE+YY I+E S GF AG ++G GGHI+
Sbjct: 92 FILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWAPTVGTGGHIS 151
Query: 171 GGAYGSMMRKYGLGADNVVDARIVDASGRILDREAMGEDFFWAIRGGGGASFGVILAWKI 230
GG +G M RKYGL ADNVVDA ++DA+G ILDR+AMGED FWAIRGGGG +G I AWKI
Sbjct: 152 GGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKI 211
Query: 231 KLXXXXXXXXXXXXXXXLE-QCATKLLHRWQEVADKLDEDLFIRVIIQVANAGPKGEKTV 289
KL + AT LLH+WQ VA++L+ED + V+ G EK V
Sbjct: 212 KLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSVL------GGADEKQV 265
Query: 290 TTSYNSLFLGGAERLLKVVEES-----FPELGLTKKDCTETSWIKSVLYIAGYPSNTPPE 344
+ G LK V +S FPELGL ++D E SW +S Y+AG E
Sbjct: 266 WLTMLGFHFG-----LKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGL------E 314
Query: 345 VLLQGKSLFKNY----FKAKSDFVKDPIPETALEGLWKRLLGEDSPLMIWTPYGGMMSKI 400
+ Q + F + FK K D K+P+P A GL +RL E + + +GG MSKI
Sbjct: 315 TVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKI 374
Query: 401 SESEIPFPHRKGTLFKIQYVSTW-QDGEKNATKHIDWIRRLYNYMGPYVSMLPRAAYVNY 459
S PFPHR GT ++Y+ W Q +K T+ +DW+ ++Y +M P+VS PR YVN+
Sbjct: 375 SSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNH 434
Query: 460 RDLDL-GMNKNGSSFIKSSV-----WGYKYFKDNFNRLVKVKTKVDPDNFFRHEQSIPPL 513
DLDL G++ + + +++ WG YF N+ RL++ KT +DP+N F H QSIPP+
Sbjct: 435 IDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIPPM 494
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant
Length = 498
Score = 331 bits (849), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 202/480 (42%), Positives = 280/480 (58%), Gaps = 36/480 (7%)
Query: 51 QNLRYLVPSMPKPEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETP 110
QN + + KP I P + + + C ++ +R+RSGG YEGLSY S+T P
Sbjct: 37 QNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGASYEGLSYTSDT--P 94
Query: 111 FIIVDLAKLRSVKVDIDDNSAWVQAGATIGEVYYRISEKSKTHGFPAGLCTSLGVGGHIT 170
FI++DL L V +D++ +AWV++G+T+GE+YY I+E S GF AG C ++G GGHI+
Sbjct: 95 FILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHIS 154
Query: 171 GGAYGSMMRKYGLGADNVVDARIVDASGRILDREAMGEDFFWAIRGGGGASFGVILAWKI 230
GG +G M RKYGL ADNVVDA ++DA+G ILDR+AMGED FWAIRGGGG +G I AWKI
Sbjct: 155 GGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKI 214
Query: 231 KLXXXXXXXXXXXXXXXLE-QCATKLLHRWQEVADKLDEDLFIRVIIQVANAGPKGEKTV 289
KL + AT LLH+WQ VA++L+ED + V+ G EK V
Sbjct: 215 KLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSVL------GGADEKQV 268
Query: 290 TTSYNSLFLGGAERLLKVVEES-----FPELGLTKKDCTETSWIKSVLYIAGYPSNTPPE 344
+ G LK V +S FPELGL ++D E SW +S Y+AG E
Sbjct: 269 WLTMLGFHFG-----LKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGL------E 317
Query: 345 VLLQGKSLFKNY----FKAKSDFVKDPIPETALEGLWKRLLGEDSPLMIWTPYGGMMSKI 400
+ Q + F + FK K D K+P+P A GL +RL E + + +GG MSKI
Sbjct: 318 TVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKI 377
Query: 401 SESEIPFPHRKGTLFKIQYVSTW-QDGEKNATKHIDWIRRLYNYMGPYVSMLPRAAYVNY 459
S PFPHR GT ++Y+ W Q +K T+ +DW+ ++Y +M P+VS PR YVN+
Sbjct: 378 SSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNH 437
Query: 460 RDLDL-GMNKNGSSFIKSSV-----WGYKYFKDNFNRLVKVKTKVDPDNFFRHEQSIPPL 513
DLDL G++ + + +++ WG YF N+ RL++ KT +DP+N F H QSIPP+
Sbjct: 438 IDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIPPM 497
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In
Complex With (S)-Reticuline
Length = 497
Score = 331 bits (848), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 202/480 (42%), Positives = 280/480 (58%), Gaps = 36/480 (7%)
Query: 51 QNLRYLVPSMPKPEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETP 110
QN + + KP I P + + + C ++ +R+RSGGH YEGLSY S+T P
Sbjct: 34 QNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDT--P 91
Query: 111 FIIVDLAKLRSVKVDIDDNSAWVQAGATIGEVYYRISEKSKTHGFPAGLCTSLGVGGHIT 170
FI++DL L V +D++ +AWV++G+T+GE+YY I+E S GF AG ++G GGHI+
Sbjct: 92 FILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWAPTVGTGGHIS 151
Query: 171 GGAYGSMMRKYGLGADNVVDARIVDASGRILDREAMGEDFFWAIRGGGGASFGVILAWKI 230
GG +G M RKYGL ADNVVDA ++DA+G ILDR+AMGED FWAIRGGGG +G I AWKI
Sbjct: 152 GGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKI 211
Query: 231 KLXXXXXXXXXXXXXXXLE-QCATKLLHRWQEVADKLDEDLFIRVIIQVANAGPKGEKTV 289
KL + AT LLH+WQ VA++L+ED + V+ G EK V
Sbjct: 212 KLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSVL------GGADEKQV 265
Query: 290 TTSYNSLFLGGAERLLKVVEES-----FPELGLTKKDCTETSWIKSVLYIAGYPSNTPPE 344
+ G LK V +S FPELGL ++D E SW +S Y+AG E
Sbjct: 266 WLTMLGFHFG-----LKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGL------E 314
Query: 345 VLLQGKSLFKNY----FKAKSDFVKDPIPETALEGLWKRLLGEDSPLMIWTPYGGMMSKI 400
+ Q + F + FK K D K+P+P A GL +RL E + + +GG MSKI
Sbjct: 315 TVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKI 374
Query: 401 SESEIPFPHRKGTLFKIQYVSTW-QDGEKNATKHIDWIRRLYNYMGPYVSMLPRAAYVNY 459
S PFPHR GT ++Y+ W Q +K T+ +DW+ ++Y +M P+VS PR YVN+
Sbjct: 375 SSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNH 434
Query: 460 RDLDL-GMNKNGSSFIKSSV-----WGYKYFKDNFNRLVKVKTKVDPDNFFRHEQSIPPL 513
DLDL G++ + + +++ WG YF N+ RL++ KT +DP+N F H QSIPP+
Sbjct: 435 IDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIPPM 494
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y08|B Chain B, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y3R|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|C Chain C, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|D Chain D, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3S|A Chain A, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y3S|B Chain B, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y4G|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
pdb|2Y4G|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
Length = 530
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 136/508 (26%), Positives = 213/508 (41%), Gaps = 75/508 (14%)
Query: 51 QNLRYLVPSMPKPEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETP 110
+NLR++ PE I A ++ + G + VRSGGH YE S+
Sbjct: 51 ENLRFV----GDPEEIHLVGSAAEIEQVLSRAVRSGKRVAVRSGGHCYEDFVANSDVR-- 104
Query: 111 FIIVDLAKLRSVKVDIDDNSAWVQAGATIGEVY---YRISEKSKTHGFPAGLCTSLGVGG 167
+++D+++L +V D + + V+AGAT+G VY +R+ + P G C +G GG
Sbjct: 105 -VVMDMSRLSAVGFDEERGAFAVEAGATLGAVYKTLFRVWGVT----LPGGACPDVGAGG 159
Query: 168 HITGGAYGSMMRKYGLGAD--NVVDARIVDASGR----ILDREAM--GEDFFWAIRGGGG 219
HI GG YG + R +G D + V+ +VDASG I RE D +WA GGGG
Sbjct: 160 HILGGGYGPLSRMHGSIVDYLHAVEVVVVDASGDARTVIATREPSDPNHDLWWAHTGGGG 219
Query: 220 ASFGVILAWKIKLXXXXXXXXXXXXXXXLEQCATKLLHRWQEVADKLDEDLFIRVIIQVA 279
+FGV++ + L A LL+ + LDE F R++
Sbjct: 220 GNFGVVV--RYWLRTAEADVPPEPGRLLPRPPAEVLLNTTVWPWEGLDEAAFARLVRNHG 277
Query: 280 -----NAGP-----------------KGEKTVTTSYNSLFLGGAERLLKVVEESFPELGL 317
N+GP G +TT ++ +RL + +G+
Sbjct: 278 RWFEQNSGPDSPWCDLYSVLALTRSQSGALAMTTQLDATGPDAEKRLETYLAAVSEGVGV 337
Query: 318 T-KKDCTETSWIKSVLYIAGYPSNTPPEVLLQGKSLFKNYFKAKSDFVKDPIPETALEGL 376
D W+ S + + G K K+ + + + + L
Sbjct: 338 QPHSDTRRLPWLHSTRWPG-----------IAGDGDMTGRAKIKAAYARRSFDDRQIGTL 386
Query: 377 WKRLLGED----SPLMIWTPYGGMMSKISESEIPFPHRKGTLFKIQYVSTWQDGEKNATK 432
+ RL D + ++ YGG ++ + R ++ KI YV+TW+D ++
Sbjct: 387 YTRLTSTDYDNPAGVVALIAYGGKVNAVPADRTAVAQRD-SILKIVYVTTWEDPAQDPV- 444
Query: 433 HIDWIRRLYNYMGPYVSMLP------RAAYVNYRDLDLGMNKNGSSFIKSSVWGYKYFKD 486
H+ WIR LY + +P AYVNY D+DL + +S + W Y+KD
Sbjct: 445 HVRWIRELYRDVYADTGGVPVPGGAADGAYVNYPDVDLADEEWNTSGVP---WSELYYKD 501
Query: 487 NFNRLVKVKTKVDPDNFFRHEQS--IPP 512
+ RL VK + DP N FRH S +PP
Sbjct: 502 AYPRLQAVKARWDPRNVFRHALSVRVPP 529
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale
pdb|3RJA|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale In Complex With Substrate Analogue
Length = 473
Score = 91.7 bits (226), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 114/472 (24%), Positives = 197/472 (41%), Gaps = 57/472 (12%)
Query: 63 PEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETPFIIVDLAKLRSV 122
P I AH+Q+AV C K+L + + +SGGH Y + E ++V L ++ V
Sbjct: 37 PTAIAQTQTTAHIQSAVQCAKKLNLKVSAKSGGHSYASFGFGGENG--HLMVQLDRMIDV 94
Query: 123 KVDIDDNS--AWVQAGATIGEVYYRISEKSKTHGFPAGLCTSLGVGGHITGGAYGSMMRK 180
+ +D + A V+ GA +G + +++K G C +G+ GH G +G
Sbjct: 95 -ISYNDKTGIAHVEPGARLGHLATVLNDKYG-RAISHGTCPGVGISGHFAHGGFGFSSHM 152
Query: 181 YGLGADNVVDARIVDASGRILDREAM-GEDFFWAIRGGGGASFGVILAWKIKLXXXXXXX 239
+GL D+VV +V A GRI++ A D FW I+ G G++FG++ WK+
Sbjct: 153 HGLAVDSVVGVTVVLADGRIVEASATENADLFWGIK-GAGSNFGIVAVWKLATFPAPKVL 211
Query: 240 XXXXXXXXLEQCATKLLHRWQEVADKLDEDLFIRVIIQVANAGPKGEKTVTTSYNSLFLG 299
+ T L + V D V ++ + G G + L+ G
Sbjct: 212 TRFGVTLNWKN-KTSALKGIEAVEDYARWVAPREVNFRIGDYG-AGNPGI----EGLYYG 265
Query: 300 GAERLLKVVEESFPEL--GLTKKDCTETSWIKSVL---------YIAGYPSNTPPEVLLQ 348
E+ + L G T +WI+SVL +I P L
Sbjct: 266 TPEQWRAAFQPLLDTLPAGYVVNPTTSLNWIESVLSYSNFDHVDFITPQPVENFYAKSLT 325
Query: 349 GKSLFKNYFKAKSDFVKDPIPETALEGLWKRLL----GEDSPLMIWTPYGGMMSKISESE 404
KS+ + K D+ D + + W L G++S ++K++ +E
Sbjct: 326 LKSIKGDAVKNFVDYYFD-VSNKVKDRFWFYQLDVHGGKNS----------QVTKVTNAE 374
Query: 405 IPFPHRKGTLFKIQYVSTWQDGEKNATKHIDWIRRLYNYMGPYVSMLPRA---AYVNYRD 461
+PHR L+ IQ+ + + N T + L ++ LP++ Y+NY D
Sbjct: 375 TAYPHRD-KLWLIQFYDRY---DNNQTYPETSFKFLDGWVNSVTKALPKSDWGMYINYAD 430
Query: 462 LDLGMNKNGSSFIKSSVWGYKYFKDNFNRLVKVKTKVDPDNFFRHEQSIPPL 513
M+++ ++ + Y+ +N RL K+K K DP + F + Q++ P+
Sbjct: 431 PR--MDRDYATKV--------YYGENLARLQKLKAKFDPTDRFYYPQAVRPV 472
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|B Chain B, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|C Chain C, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|D Chain D, Crystal Structure Of Aclacinomycin Oxidoreductase
Length = 521
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 121/485 (24%), Positives = 206/485 (42%), Gaps = 54/485 (11%)
Query: 62 KPEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETPFI--IVDLAKL 119
+P+ ++ V AV G + VRSGGH +EG + P + ++D++++
Sbjct: 55 RPDVVYVVHTADQVVDAVNQAMAAGQRIAVRSGGHCFEGF-----VDDPAVRAVIDMSQM 109
Query: 120 RSVKVDIDDNSAWVQAGATIGEVYYRISEKSKTHGFPAGLCTSLGVGGHITGGAYGSMMR 179
R V D + V+ GAT+GE YR PAG+C +GVGGH+ GG YG + R
Sbjct: 110 RQVFYDSGKRAFAVEPGATLGET-YRALYLDWGVTIPAGVCPQVGVGGHVLGGGYGPLSR 168
Query: 180 KYGLGADNV--VDARIVDASGRILDREAM------GEDFFWAIRGGGGASFGVILAWKIK 231
+ G+ AD++ V+ +VDASGR A + +WA GGGG +FG++ + +
Sbjct: 169 RDGVVADHLYAVEVVVVDASGRARKVVATSAADDPNRELWWAHTGGGGGNFGIVTRYWFR 228
Query: 232 LXXXXXXXXXXXXXXXLEQCATKLLHR---WQEVADKLDEDLFIRVIIQ--VANAGPKGE 286
L + T L W A L E+ F R+I +
Sbjct: 229 ----TPGATGTDPSQLLPKAPTSTLRHIVTWDWSA--LTEEAFTRIIDNHGAWHQSNSAA 282
Query: 287 KTVTTSYNSLFLGGAERLLKVVEESFPELGLTKKDCTETSWIKSVLYIAGYPSNTPPEVL 346
T S +S+F + +++ + + GL + ++ +V G
Sbjct: 283 GTPYASMHSVFYLNSRAAGQILLDIQIDGGLDGAEALLNDFVAAVNEGTGVEPAVQRSTE 342
Query: 347 LQGKSLFKNYF--------KAKSDFVKDPIPETALEGLWKRLLGEDSPLMIWT-----PY 393
++ N F K+K +++ P L++ L + +W Y
Sbjct: 343 PWLRATLANKFDTGGFDRTKSKGAYLRKPWTAAQAATLYRHLSADS---QVWGEVSLYSY 399
Query: 394 GGMMSKISESEIPFPHRKGTLFKIQYVSTWQDGEKNATKHIDWIRRLYNYMGPYVSMLP- 452
GG ++ + E+ R ++ K+ +TW D + ++ WIR +Y + +P
Sbjct: 400 GGKVNSVPETATATAQRD-SIIKVWMSATWMDPAHD-DANLAWIREIYREIFATTGGVPV 457
Query: 453 -----RAAYVNYRDLDLGMNKNGSSFIKSSVWGYKYFKDNFNRLVKVKTKVDPDNFFRHE 507
++NY D+DL + +S + W Y+K N+ RL KVK + DP + FRH
Sbjct: 458 PDDRTEGTFINYPDVDLVDERWNTSGVP---WYTLYYKGNYPRLQKVKARWDPRDVFRHA 514
Query: 508 QSIPP 512
S+ P
Sbjct: 515 LSVRP 519
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|B Chain B, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|C Chain C, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|D Chain D, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3PQB|A Chain A, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|B Chain B, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|C Chain C, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|D Chain D, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
Length = 501
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 127/506 (25%), Positives = 203/506 (40%), Gaps = 77/506 (15%)
Query: 50 AQNLRYLVPSMPKPEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETET 109
+ N R++V +PE F P V A++ G + RSGGH G +V T
Sbjct: 26 SDNHRFVV----EPEEFFLPATPDDVVASLQKAVTEGRGVACRSGGH--CGQDFVG-TPR 78
Query: 110 PFIIVDLAKLRSVKVDIDDNSAWVQAGATIGEVYYRISEKSKTHGFPAGLCTSLGVGGHI 169
+++DL L ++ D V +GAT+ +V + + P G C+++G+GG +
Sbjct: 79 RDLVLDLHNLHAIGPAADGAGVRVGSGATVDQVQKALFRRWNA-ALPLGACSAVGMGGLV 137
Query: 170 TGGAYGSMMRKYGLGADNV--VDARIVDAS-------GRILDREAMGEDFFWAIRGGGGA 220
GG YG + R+ GL D++ V+ +VD S R D +GE FWA GGGG
Sbjct: 138 AGGGYGPLSRQLGLVVDHLHAVEVAVVDESRTVRLVTARADDTGDLGE-LFWAHTGGGGG 196
Query: 221 SFGVILAWKIKLXXXXXXXXXXXXXXXLEQCATKLLHRWQEVADKLDEDLFIRVIIQVAN 280
+FGV+ A++ + K++ W +DE F+ V+ +
Sbjct: 197 NFGVVTAYEFRSPEHLATEPVGLPRAAGRLHVQKVVFPWA----MIDETSFVTVMRRFFE 252
Query: 281 --------AGPKGEKTVTTSYNSLFLGGAERLLKVVEESFPE---LGLTKKDCTE----- 324
P+ T N + G + +++ + PE L TE
Sbjct: 253 WHERHSEPGSPESSLFATFFVNHVSSGVLQLMVQQDADVDPEGEILARFVASLTEGTGVV 312
Query: 325 -------TSWIKSVLYIAGYPSNTPPEVLLQGKSLFKNYFKAKSDFVKDPIPETALEGLW 377
SW+ Y+ S ++ +S K+ + + P +
Sbjct: 313 GIPRGGVMSWLTGTRYM----SQADCGDVMGARSASKSAYHRAA-------PTDEQLSVL 361
Query: 378 KRLLGEDSP----LMIWTPYGGMMSKISESEIPFPHRKGTLFKIQYVSTWQDGEKNATKH 433
R L D P +++ YGG +++ S+ P R ++ K + S WQD E + H
Sbjct: 362 HRHLHADHPGQASYVMFNSYGGEINRRGPSDAAVPQRD-SVVKSSWFSAWQDAELDEL-H 419
Query: 434 IDWIRRLYN------YMGPYVSMLPRAAYVNYRDLDL---GMNKNGSSFIKSSVWGYKYF 484
+ W+R LY P Y+NY D DL N++G W + Y+
Sbjct: 420 LGWLRGLYEEFFAGTGGVPVTGGRTDGCYINYPDADLLDPARNRSGEP------WHHLYY 473
Query: 485 KDNFNRLVKVKTKVDPDNFFRHEQSI 510
KDN+ RL K DP N F H SI
Sbjct: 474 KDNYARLRSAKRAWDPLNTFHHSMSI 499
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDW|B Chain B, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|A Chain A, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|B Chain B, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|C Chain C, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|D Chain D, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
Length = 523
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 123/485 (25%), Positives = 205/485 (42%), Gaps = 52/485 (10%)
Query: 62 KPEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETPFIIVDLAKLRS 121
+P++I V AV G + VRSGGH +E +V + +I+D++ L
Sbjct: 57 EPDYIHLVGSTQQVADAVEETVRTGKRVAVRSGGHCFE--DFVDNPDVK-VIIDMSLLTE 113
Query: 122 VKVDIDDNSAWVQAGATIGEVYYRISEKSKTHGFPAGLCTSLGVGGHITGGAYGSMMRKY 181
+ D N+ ++ G T+ EVY ++ P G+C +GVGGHI GG YG + R++
Sbjct: 114 IAYDPSMNAFLIEPGNTLSEVYEKLYLGWNV-TIPGGVCGGVGVGGHICGGGYGPLSRQF 172
Query: 182 GLGADNV--VDARIVDASGR------ILDREAMGEDFFWAIRGGGGASFGVILAWKIKLX 233
G D + V+ +V+ G+ +R+ D +WA GGGG +FGV+ + +++
Sbjct: 173 GSVVDYLYAVEVVVVNKQGKARVIVATRERDDPHHDLWWAHTGGGGGNFGVVTKYWMRVP 232
Query: 234 XXXXXXXXXXXXXXLEQCATK-LLHRWQEVADKLDEDLFIRVIIQVA-----NAGPKGEK 287
T + W + E F R++ N+GP +
Sbjct: 233 EDVGRNPERLLPKPPATLLTSTVTFDWA----GMTEAAFSRLLRNHGEWYERNSGP--DS 286
Query: 288 TVTTSYNSLFLGGAERLLKVVEESFP-ELGLTKKDCTETSWIKSVLYIAGYPSNTPPEVL 346
T ++ L +G + P ++ T+ D I G P PE +
Sbjct: 287 PYTGLWSQLMIGNEVPGMGESGFMMPIQVDATRPDARRLLDAHIEAVIDGVPPAEVPEPI 346
Query: 347 LQ-------GKSLFKNYFKAKSDFVKDPIPETALEGLWKRLL---GEDSPLMIWTPYGGM 396
Q G+ K K+ +++ + + ++ +++ + G D + YGG
Sbjct: 347 EQRWLASTPGRGGRGPASKTKAGYLRKRLTDRQIQAVYENMTHMDGIDYGAVWLIGYGGK 406
Query: 397 MSKISESEIPFPHRKGTLFKIQYVSTWQDGEKNATKHIDWIRRLYNYMGPYVSMLP---- 452
++ + + P R L K+ Y++ W + N KH+ W+R+LY + +P
Sbjct: 407 VNTVDPAATALPQRDAIL-KVNYITGWAN-PGNEAKHLTWVRKLYADVYAETGGVPVPND 464
Query: 453 --RAAYVNYRDLDL---GMNKNGSSFIKSSVWGYKYFKDNFNRLVKVKTKVDPDNFFRHE 507
AY+NY D DL G+N +G W Y+K N RL KVK DP N F H
Sbjct: 465 VSDGAYINYPDSDLADPGLNTSGVP------WHDLYYKGNHPRLRKVKAAYDPRNHFHHA 518
Query: 508 QSIPP 512
SI P
Sbjct: 519 LSIRP 523
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVF|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVG|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVH|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
Length = 459
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 110/469 (23%), Positives = 185/469 (39%), Gaps = 64/469 (13%)
Query: 60 MPKPEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETPFIIVDLAKL 119
+ +P I L V +V + G+ + VRSGGH+ G + T I++DL +
Sbjct: 36 LQRPSLIARCLSAGDVAKSVRYACDNGLEISVRSGGHNPNGYA----TNDGGIVLDLRLM 91
Query: 120 RSVKVDIDDNSAWVQAGATIGEVYYRISEKSKTHGFPA--GLCTSLGVGGHITGGAYGSM 177
S+ +D + A + G G++ + E +K G A G+ +G G G G +
Sbjct: 92 NSIHIDTAGSRARIGGGVISGDL---VKEAAK-FGLAAVTGMHPKVGFCGLALNGGVGFL 147
Query: 178 MRKYGLGADNVVDARIVDASGRIL---DREAMGEDFFWAIRGGGGASFGVILAWKIKLXX 234
KYGL +DN++ A +V A+G ++ D E + FWA+R G G +FGV+ +++L
Sbjct: 148 TPKYGLASDNILGATLVTATGDVIYCSDDER--PELFWAVR-GAGPNFGVVTEVEVQLYE 204
Query: 235 XXXXXXX-----XXXXXXLEQCATKLLHRWQEVADKLDEDLFIRVIIQVANAGPKGEKTV 289
L T LL E+AD + +F+ V N P TV
Sbjct: 205 LPRKMLAGFITWAPSVSELAGLLTSLLDALNEMADHIYPSVFVGVD---ENRAPS--VTV 259
Query: 290 TTSYNSLFLGGAERLLKVVEESFPELGLTKKDCTETSWIKSVLYIAGYPSNTPPEVLLQG 349
+ LGG L + E L + +++ ++S + N G
Sbjct: 260 CVGH----LGG----LDIAERDIARLRGLGRTVSDSIAVRSYDEVVAL--NAEVGSFEDG 309
Query: 350 KSLFKNYFKAKSDFVKDPIPETALEGLWKRLLGEDSPLMIWTPYGGMMSKISESEIPF-- 407
S N + + + + A+ G + + E P G K+ +PF
Sbjct: 310 MS---NLWIDREIAMPNARFAEAIAGNLDKFVSE--------PASGGSVKLEIEGMPFGN 358
Query: 408 ----PHRKGTLFKIQYVSTWQDGEKNATKHIDWIRRLYNYMGPYVSMLPRAAYVNYRDLD 463
P R + ++ W + K+ + R L + L RA
Sbjct: 359 PKRTPARHRDAMGVLALAEWSGAAPGSEKYPELARELD-------AALLRAGVTTS---G 408
Query: 464 LGMNKNGSSFIKSSVWGYKYFKDNFNRLVKVKTKVDPDNFFRHEQSIPP 512
G+ N S + + + Y + ++RL VK + DP+N FRH +I P
Sbjct: 409 FGLLNNNSE-VTAEMVAEVYKPEVYSRLAAVKREYDPENRFRHNYNIDP 456
>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum
Glucooligosaccharide Oxidase Reveals A Novel
Flavinylation
pdb|2AXR|A Chain A, Crystal Structure Of Glucooligosaccharide Oxidase From
Acremonium Strictum: A Novel Flavinylation Of
6-S-Cysteinyl, 8alpha-N1-Histidyl Fad
Length = 503
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 114/487 (23%), Positives = 193/487 (39%), Gaps = 68/487 (13%)
Query: 63 PEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETPFIIVDLAKLRSV 122
P I P + AAV C + GV + + GGH Y + E ++++L ++ V
Sbjct: 43 PAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGG--EDGHLMLELDRMYRV 100
Query: 123 KVDIDDNSAWVQAGATIGEVYYRISEKSKTHGFPAGLCTSLGVGGHITGGAYGSMMRKYG 182
VD D+N A +Q GA +G + ++ G C ++GVGGH+ GG YG +G
Sbjct: 101 SVD-DNNVATIQGGARLGYTALELLDQGN-RALSHGTCPAVGVGGHVLGGGYGFATHTHG 158
Query: 183 LGADNVVDARIVDASGRILD-REAMGEDFFWAIRGGGGASFGVILAWKIKLXXXXXXXXX 241
L D ++ A +V A I+ E D FWA+RGGGG F ++ ++
Sbjct: 159 LTLDWLIGATVVLADASIVHVSETENADLFWALRGGGGG-FAIVSEFEFNTFEAPEIITT 217
Query: 242 XXXXXXLEQ----CATKLLHRWQEVADKLDEDLFIRVIIQVANAGPKGEKTVTTSYNSLF 297
+ K L W + + + +L +R+ I ANA ++ F
Sbjct: 218 YQVTTTWNRKQHVAGLKALQDWAQ--NTMPRELSMRLEIN-ANA---------LNWEGNF 265
Query: 298 LGGAERLLKVVEESFPELG--LTKKDCTETSW---IKSVLYIAGYPSNTPPEV------- 345
G A+ L K+++ + G T ET W I + LY A +V
Sbjct: 266 FGNAKDLKKILQPIMKKAGGKSTISKLVETDWYGQINTYLYGADLNITYNYDVHEYFYAN 325
Query: 346 LLQGKSLFKNYFKAKSDFVKDPIPETALEGLWKRLLGEDSPLMIWTPYGG---MMSKISE 402
L L +A D+ D G W + W +GG ++ +S
Sbjct: 326 SLTAPRLSDEAIQAFVDYKFDNSSVRPGRGWW----------IQWDFHGGKNSALAAVSN 375
Query: 403 SEIPFPHRKGTLFKIQYVSTWQDGEKNATKHIDWIRRLYNYMGPYVSMLP-------RAA 455
E + HR L+ Q+ + D E N + + + + +M +V+ + +
Sbjct: 376 DETAYAHRD-QLWLWQFYDSIYDYENNTSPYPE---SGFEFMQGFVATIEDTLPEDRKGK 431
Query: 456 YVNYRDLDLGMNKNGSSFIKSSVWGYKYFKDNFNRLVKVKTKVDPDNFFRHEQSIPPLPL 515
Y NY D L + Y++ N +L +K K DP++ F + S+ P+
Sbjct: 432 YFNYADTTLTKEEAQK----------LYWRGNLEKLQAIKAKYDPEDVFGNVVSVEPIAY 481
Query: 516 CSEHCLA 522
+ ++
Sbjct: 482 LEQKLIS 488
>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl
Fad In Glucooligosaccharide Oxidase From Acremonium
Strictum
Length = 503
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 113/487 (23%), Positives = 192/487 (39%), Gaps = 68/487 (13%)
Query: 63 PEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETPFIIVDLAKLRSV 122
P I P + AAV C + GV + + GGH Y + E ++++L ++ V
Sbjct: 43 PAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGG--EDGHLMLELDRMYRV 100
Query: 123 KVDIDDNSAWVQAGATIGEVYYRISEKSKTHGFPAGLCTSLGVGGHITGGAYGSMMRKYG 182
VD D+N A +Q GA +G + ++ G ++GVGGH+ GG YG +G
Sbjct: 101 SVD-DNNVATIQGGARLGYTALELLDQGN-RALSHGTAPAVGVGGHVLGGGYGFATHTHG 158
Query: 183 LGADNVVDARIVDASGRILD-REAMGEDFFWAIRGGGGASFGVILAWKIKLXXXXXXXXX 241
L D ++ A +V A I+ E D FWA+RGGGG F ++ ++
Sbjct: 159 LTLDWLIGATVVLADASIVHVSETENADLFWALRGGGGG-FAIVSEFEFNTFEAPEIITT 217
Query: 242 XXXXXXLEQ----CATKLLHRWQEVADKLDEDLFIRVIIQVANAGPKGEKTVTTSYNSLF 297
+ K L W + + + +L +R+ I ANA ++ F
Sbjct: 218 YQVTTTWNRKQHVAGLKALQDWAQ--NTMPRELSMRLEIN-ANA---------LNWEGNF 265
Query: 298 LGGAERLLKVVEESFPELG--LTKKDCTETSW---IKSVLYIAGYPSNTPPEV------- 345
G A+ L K+++ + G T ET W I + LY A +V
Sbjct: 266 FGNAKDLKKILQPIMKKAGGKSTISKLVETDWYGQINTYLYGADLNITYNYDVHEYFYAN 325
Query: 346 LLQGKSLFKNYFKAKSDFVKDPIPETALEGLWKRLLGEDSPLMIWTPYGG---MMSKISE 402
L L +A D+ D G W + W +GG ++ +S
Sbjct: 326 SLTAPRLSDEAIQAFVDYKFDNSSVRPGRGWW----------IQWDFHGGKNSALAAVSN 375
Query: 403 SEIPFPHRKGTLFKIQYVSTWQDGEKNATKHIDWIRRLYNYMGPYVSMLP-------RAA 455
E + HR L+ Q+ + D E N + + + + +M +V+ + +
Sbjct: 376 DETAYAHRD-QLWLWQFYDSIYDYENNTSPYPE---SGFEFMQGFVATIEDTLPEDRKGK 431
Query: 456 YVNYRDLDLGMNKNGSSFIKSSVWGYKYFKDNFNRLVKVKTKVDPDNFFRHEQSIPPLPL 515
Y NY D L + Y++ N +L +K K DP++ F + S+ P+
Sbjct: 432 YFNYADTTLTKEEAQK----------LYWRGNLEKLQAIKAKYDPEDVFGNVVSVEPIAY 481
Query: 516 CSEHCLA 522
+ ++
Sbjct: 482 LEQKLIS 488
>pdb|3PM9|A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|B Chain B, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|C Chain C, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|D Chain D, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|E Chain E, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|F Chain F, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
Length = 476
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 8/128 (6%)
Query: 112 IIVDLAKLRSVK-VDIDDNSAWVQAGATIGEVYYRISEKSKTHGFPAGLCTSLGVGGHIT 170
+++ L + ++ +D N+ V+AGA + V + +E + G S +GG+++
Sbjct: 98 VVISLKRXDKIREIDTSSNTITVEAGAILQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLS 157
Query: 171 GGAYGSMMRKYGLGADNVVDARIVDASGRI------LDREAMGEDFFWAIRGGGGASFGV 224
A G+ YGL D + +V A GR+ L ++ G D G G + G+
Sbjct: 158 TNAGGTAALAYGLARDXALGVEVVLADGRVXNLLSKLKKDNTGYDLRDLFIGAEG-TLGI 216
Query: 225 ILAWKIKL 232
I A +KL
Sbjct: 217 ITAATLKL 224
>pdb|4BC7|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
Length = 658
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 74/177 (41%), Gaps = 8/177 (4%)
Query: 63 PEFIFTP-LYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETPFIIVDLAKL-R 120
P+ + P ++ V+ + CK + + G GL ++ I +D +++ R
Sbjct: 206 PDIVLWPTCHDDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQMNR 265
Query: 121 SVKVDIDDNSAWVQAGATIGEVYYRISEKSKTHGFPAGLCTSLGVGGHITGGAYGSMMRK 180
+ VD ++ +A V+AG T E+ ++ E G VGG I+ A G
Sbjct: 266 ILWVDENNLTAHVEAGITGQELERQLKESGYCTGHEPDSLEFSTVGGWISTRASGMKKNI 325
Query: 181 YGLGADNVVDARIVDASGRILD-----REAMGEDFFWAIRGGGGASFGVILAWKIKL 232
YG D VV ++V G I R + G D I G G + GVI IK+
Sbjct: 326 YGNIEDLVVHMKVVTPRGVIEKSCQGPRMSTGPDIHHFIMGSEG-TLGVITEATIKI 381
>pdb|4BBY|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BC9|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
Length = 658
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 74/177 (41%), Gaps = 8/177 (4%)
Query: 63 PEFIFTP-LYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETPFIIVDLAKL-R 120
P+ + P ++ V+ + CK + + G GL ++ I +D +++ R
Sbjct: 206 PDIVLWPTCHDDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQMNR 265
Query: 121 SVKVDIDDNSAWVQAGATIGEVYYRISEKSKTHGFPAGLCTSLGVGGHITGGAYGSMMRK 180
+ VD ++ +A V+AG T E+ ++ E G VGG I+ A G
Sbjct: 266 ILWVDENNLTAHVEAGITGQELERQLKESGYCTGHEPDSLEFSTVGGWISTRASGMKKNI 325
Query: 181 YGLGADNVVDARIVDASGRILD-----REAMGEDFFWAIRGGGGASFGVILAWKIKL 232
YG D VV ++V G I R + G D I G G + GVI IK+
Sbjct: 326 YGNIEDLVVHMKVVTPRGVIEKSCQGPRMSTGPDIHHFIMGSEG-TLGVITEATIKI 381
>pdb|4BCA|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
Length = 658
Score = 35.4 bits (80), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 74/177 (41%), Gaps = 8/177 (4%)
Query: 63 PEFIFTP-LYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETPFIIVDLAKL-R 120
P+ + P ++ V+ + CK + + G GL ++ I +D +++ R
Sbjct: 206 PDIVLWPTCHDDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQMNR 265
Query: 121 SVKVDIDDNSAWVQAGATIGEVYYRISEKSKTHGFPAGLCTSLGVGGHITGGAYGSMMRK 180
+ VD ++ +A V+AG T E+ ++ E G VGG I+ A G
Sbjct: 266 ILWVDENNLTAHVEAGITGQELERQLKESGYCTGHEPDSLEFSTVGGWISTRASGMKKNI 325
Query: 181 YGLGADNVVDARIVDASGRILD-----REAMGEDFFWAIRGGGGASFGVILAWKIKL 232
YG D VV ++V G I R + G D I G G + GVI IK+
Sbjct: 326 YGNIEDLVVHMKVVTPRGVIEKSCQGPRMSTGPDIHHFIMGSEG-TLGVITEATIKI 381
>pdb|1DII|A Chain A, Crystal Structure Of P-Cresol Methylhydroxylase At 2.5 A
Resolution
pdb|1DII|B Chain B, Crystal Structure Of P-Cresol Methylhydroxylase At 2.5 A
Resolution
pdb|1DIQ|A Chain A, Crystal Structure Of P-Cresol Methylhydroxylase With
Substrate Bound
pdb|1DIQ|B Chain B, Crystal Structure Of P-Cresol Methylhydroxylase With
Substrate Bound
Length = 521
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 63 PEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETPFIIVDLAKL-RS 121
P T VQ V C E + + S G ++ G + + +I+DL K+ +
Sbjct: 58 PSAAVTATTVEQVQGVVKICNEHKIPIWTISTGRNF-GYGSAAPVQRGQVILDLKKMNKI 116
Query: 122 VKVDIDDNSAWVQAGATIGEVYYRISEKS 150
+K+D + A V+ G T G++Y I E +
Sbjct: 117 IKIDPEMCYALVEPGVTFGQMYDYIQENN 145
>pdb|1WVE|A Chain A, P-Cresol Methylhydroxylase: Alteration Of The Structure Of
The Flavoprotein Subunit Upon Its Binding To The
Cytochrome Subunit
pdb|1WVE|B Chain B, P-Cresol Methylhydroxylase: Alteration Of The Structure Of
The Flavoprotein Subunit Upon Its Binding To The
Cytochrome Subunit
pdb|1WVF|A Chain A, P-cresol Methylhydroxylase: Alteration Of The Structure Of
The Flavoprotein Subunit Upon Its Binding To The
Cytochrome Subunit
Length = 520
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 63 PEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETPFIIVDLAKL-RS 121
P T VQ V C E + + S G ++ G + + +I+DL K+ +
Sbjct: 57 PSAAVTATTVEQVQGVVKICNEHKIPIWTISTGRNF-GYGSAAPVQRGQVILDLKKMNKI 115
Query: 122 VKVDIDDNSAWVQAGATIGEVYYRISEKS 150
+K+D + A V+ G T G++Y I E +
Sbjct: 116 IKIDPEMCYALVEPGVTFGQMYDYIQENN 144
>pdb|2DKH|A Chain A, Crystal Structure Of 3-Hydroxybenzoate Hydroxylase From
Comamonas Testosteroni, In Complex With The Substrate
pdb|2DKI|A Chain A, Crystal Structure Of 3-Hydroxybenzoate Hydroxylase From
Comamonas Testosteroni, Under Pressure Of Xenon Gas (12
Atm)
Length = 639
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 45/113 (39%), Gaps = 20/113 (17%)
Query: 357 FKAKSDFVKDPIPETALEGLWKRLLGED-SPLMIWTPYGGMMSKISESEIPFPHR----- 410
F A++D + PE+ L L + L G+ SPL +TP G + I + FP
Sbjct: 504 FAAQNDLAQ---PESGLLALCRFLEGDAASPLRRFTPAGQDIDSIFDLRAVFPQAYTEVA 560
Query: 411 -----------KGTLFKIQYVSTWQDGEKNATKHIDWIRRLYNYMGPYVSMLP 452
KG L I Y + KNA + I +R + G V + P
Sbjct: 561 LETLPALLLPPKGQLGMIDYEKVFSPDLKNAGQDIFELRGIDRQQGALVVVRP 613
>pdb|1ZYQ|A Chain A, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
Length = 698
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 450 MLPRAAYVNYRDLDLGMNKNGSSFIKSSVWGYKY------FKDNFNRLVK 493
+L R + N +D D+G+ ++G WGY+ +KD+F R+++
Sbjct: 93 VLSRLIHSNLKDTDMGLLRSGKLPGALEAWGYRLGEMKGEYKDDFKRMLE 142
>pdb|1T7P|A Chain A, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|A Chain A, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|A Chain A, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template
pdb|1SKW|A Chain A, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|A Chain A, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|C Chain C, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|A Chain A, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|A Chain A, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template And An Incoming Nucleotide
pdb|1TK0|A Chain A, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Ddctp At The Insertion Site
pdb|1TK5|A Chain A, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|A Chain A, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Damp At The Elongation Site
pdb|1TKD|A Chain A, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Dcmp At The Elongation Site
pdb|1T8E|A Chain A, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|A Chain A, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|A Chain A, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|A Chain A, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide
Length = 698
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 450 MLPRAAYVNYRDLDLGMNKNGSSFIKSSVWGYKY------FKDNFNRLVK 493
+L R + N +D D+G+ ++G WGY+ +KD+F R+++
Sbjct: 93 VLSRLIHSNLKDTDMGLLRSGKLPGALEAWGYRLGEMKGEYKDDFKRMLE 142
>pdb|2EXR|A Chain A, X-Ray Structure Of Cytokinin OxidaseDEHYDROGENASE (CKX)
FROM Arabidopsis Thaliana At5g21482
pdb|2Q4W|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Cytokinin OxidaseDEHYDROGENASE (CKX) FROM ARABIDOPSIS
THALIANA AT5G21482
Length = 524
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 163 LGVGGHITGGAYGSMMRKYGLGADNVVDARIVDASGRILD-REAMGEDFFWAIRGGGGAS 221
L VGG ++ +YG NV + +V +G ++ E + F+++ GG G
Sbjct: 166 LTVGGTLSNAGVSGQAFRYGPQTSNVTELDVVTGNGDVVTCSEIENSELFFSVLGGLG-Q 224
Query: 222 FGVILAWKIKL 232
FG+I ++ L
Sbjct: 225 FGIITRARVLL 235
>pdb|1QFF|A Chain A, E. Coli Ferric Hydroxamate Uptake Receptor (Fhua) In
Complex With Bound Ferrichrome-Iron
Length = 725
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 162 SLGVGGHITGGAYGSMMRKYGLGADNVVDARI 193
+LG GG TG +YG + +G+ VVDA +
Sbjct: 642 TLGTGGRYTGSSYGDPANSFKVGSYTVVDALV 673
>pdb|1BY3|A Chain A, Fhua From E. Coli
pdb|1BY5|A Chain A, Fhua From E. Coli, With Its Ligand Ferrichrome
Length = 714
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 162 SLGVGGHITGGAYGSMMRKYGLGADNVVDARI 193
+LG GG TG +YG + +G+ VVDA +
Sbjct: 631 TLGTGGRYTGSSYGDPANSFKVGSYTVVDALV 662
>pdb|1QJQ|A Chain A, Ferric Hydroxamate Receptor From Escherichia Coli (fhua)
pdb|1QKC|A Chain A, Escherichia Coli Ferric Hydroxamate Uptake Receptor (Fhua)
In Complex Delta Two-Albomycin
pdb|1QFG|A Chain A, E. Coli Ferric Hydroxamate Receptor (Fhua)
pdb|2GRX|A Chain A, Crystal Structure Of Tonb In Complex With Fhua, E. Coli
Outer Membrane Receptor For Ferrichrome
pdb|2GRX|B Chain B, Crystal Structure Of Tonb In Complex With Fhua, E. Coli
Outer Membrane Receptor For Ferrichrome
Length = 725
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 162 SLGVGGHITGGAYGSMMRKYGLGADNVVDARI 193
+LG GG TG +YG + +G+ VVDA +
Sbjct: 642 TLGTGGRYTGSSYGDPANSFKVGSYTVVDALV 673
>pdb|1LI5|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase
pdb|1LI5|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase
pdb|1LI7|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase With
Cysteine Substrate Bound
pdb|1LI7|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase With
Cysteine Substrate Bound
pdb|1U0B|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase Binary
Complex With Trnacys
Length = 461
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 58 PSMPKPEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHD 97
PS P P P + H++ + + CK+LG H + GG D
Sbjct: 192 PSWPSPWGAGRPGW--HIECSAMNCKQLGNHFDIHGGGSD 229
>pdb|1FCP|A Chain A, Ferric Hydroxamate Uptake Receptor (Fhua) From E.Coli In
Complex With Bound Ferrichrome-Iron
Length = 705
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 162 SLGVGGHITGGAYGSMMRKYGLGADNVVDARI 193
+LG GG TG +YG + +G+ VVDA +
Sbjct: 622 TLGTGGRYTGSSYGDPANSFKVGSYTVVDALV 653
>pdb|2FCP|A Chain A, Ferric Hydroxamate Uptake Receptor (fhua) From E.coli
Length = 723
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 162 SLGVGGHITGGAYGSMMRKYGLGADNVVDARI 193
+LG GG TG +YG + +G+ VVDA +
Sbjct: 640 TLGTGGRYTGSSYGDPANSFKVGSYTVVDALV 671
>pdb|3LXH|A Chain A, Crystal Structure Of Cytochrome P450 Cyp101d1
pdb|3LXH|B Chain B, Crystal Structure Of Cytochrome P450 Cyp101d1
pdb|3LXI|A Chain A, Crystal Structure Of Camphor-Bound Cyp101d1
pdb|3LXI|B Chain B, Crystal Structure Of Camphor-Bound Cyp101d1
Length = 421
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 370 ETALEGLWKRLLGEDSPLMIWTPYGG 395
E WKR+ D+P ++WTP+ G
Sbjct: 37 EQGFHEAWKRVQQPDTPPLVWTPFTG 62
>pdb|1FI1|A Chain A, Fhua In Complex With Lipopolysaccharide And Rifamycin
Cgp4832
Length = 707
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 162 SLGVGGHITGGAYGSMMRKYGLGADNVVDARI 193
+LG GG TG +YG + +G+ VVDA +
Sbjct: 624 TLGTGGRYTGSSYGDPANSFKVGSYTVVDALV 655
>pdb|2UUU|A Chain A, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUU|B Chain B, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUU|C Chain C, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUU|D Chain D, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUV|A Chain A, Alkyldihydroxyacetonephosphate Synthase In P1
pdb|2UUV|B Chain B, Alkyldihydroxyacetonephosphate Synthase In P1
pdb|2UUV|C Chain C, Alkyldihydroxyacetonephosphate Synthase In P1
pdb|2UUV|D Chain D, Alkyldihydroxyacetonephosphate Synthase In P1
Length = 584
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 62/165 (37%), Gaps = 9/165 (5%)
Query: 63 PEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETPFIIVDLAKLRSV 122
P+ I P V+ V + V + GG + G E + +D+ ++ V
Sbjct: 138 PDLIVLPHSHEEVERLVQLAHKYNVVIIPMGGGSNIVGAIEPVSNERFTVSIDMRRMNKV 197
Query: 123 K-VDIDDNSAWVQAGATIGEVYYRISEKSKTHGFPAGLCTSLGVGGHITGGAYGSMMRKY 181
VD + +A +Q G E+ ++ ++ + G +GG + + G KY
Sbjct: 198 LWVDRREMTACIQVGIMGPELEKQLHKQGVSLGHDPDSFEFSTLGGWLATCSSGHQSDKY 257
Query: 182 GLGADNVVDARIVDASGRILDREAMGEDFFWAIRGGGGASFGVIL 226
G D V R V +G + R R G G ++ I+
Sbjct: 258 GDIEDMAVSFRTVTPTGTLELRNGA--------RSGAGINYKHII 294
>pdb|4G3T|A Chain A, Mycobacterium Smegmatis Dpre1 - Hexagonal Crystal Form
pdb|4G3U|A Chain A, Mycobacterium Smegmatis Dpre1 - Monoclinic Crystal Form
pdb|4G3U|B Chain B, Mycobacterium Smegmatis Dpre1 - Monoclinic Crystal Form
Length = 403
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 165 VGGHITGGAYGSMMRKYGLGADNVVDARIVDASGRILDREAMG--EDFFWAIRGGGGASF 222
VGG I +G G ++V ++ A+G + G D FWA GG G +
Sbjct: 65 VGGAIGCDIHGKNHHSAGSFGNHVRSMELLTANGEVRHLTPAGPDSDLFWATVGGNGLT- 123
Query: 223 GVILAWKIKL 232
G+IL I++
Sbjct: 124 GIILRATIEM 133
>pdb|4AUT|A Chain A, Crystal Structure Of The Tuberculosis Drug Target
Decaprenyl-Phosphoryl-Beta-D-Ribofuranose-2-
Oxidoreductase (Dpre1) From Mycobacterium Smegmatis
pdb|4F4Q|A Chain A, Crystal Structure Of M. Smegmatis Dpre1 In Complex With
Fad And Covalently Bound Btz043
Length = 468
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 165 VGGHITGGAYGSMMRKYGLGADNVVDARIVDASGRILDREAMG--EDFFWAIRGGGGASF 222
VGG I +G G ++V ++ A+G + G D FWA GG G +
Sbjct: 130 VGGAIGCDIHGKNHHSAGSFGNHVRSMELLTANGEVRHLTPAGPDSDLFWATVGGNGLT- 188
Query: 223 GVILAWKIKL 232
G+IL I++
Sbjct: 189 GIILRATIEM 198
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,608,841
Number of Sequences: 62578
Number of extensions: 664884
Number of successful extensions: 1693
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1573
Number of HSP's gapped (non-prelim): 50
length of query: 522
length of database: 14,973,337
effective HSP length: 103
effective length of query: 419
effective length of database: 8,527,803
effective search space: 3573149457
effective search space used: 3573149457
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)