Query 036220
Match_columns 522
No_of_seqs 271 out of 2192
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 10:37:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036220.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036220hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02441 cytokinin dehydrogena 100.0 1.8E-37 4E-42 327.7 39.3 189 54-248 56-254 (525)
2 TIGR01678 FAD_lactone_ox sugar 100.0 4E-33 8.7E-38 292.7 33.2 196 54-263 6-204 (438)
3 PRK11230 glycolate oxidase sub 100.0 9.1E-33 2E-37 294.9 32.0 195 59-257 52-252 (499)
4 COG0277 GlcD FAD/FMN-containin 100.0 2.7E-32 5.9E-37 291.6 29.8 185 59-248 28-219 (459)
5 TIGR01679 bact_FAD_ox FAD-link 100.0 1E-31 2.2E-36 281.8 30.3 195 54-264 3-199 (419)
6 PLN02805 D-lactate dehydrogena 100.0 2.1E-32 4.7E-37 293.5 23.9 192 61-258 132-330 (555)
7 TIGR01676 GLDHase galactonolac 100.0 1E-31 2.2E-36 283.8 21.8 197 54-263 53-251 (541)
8 TIGR01677 pln_FAD_oxido plant- 100.0 5.2E-30 1.1E-34 274.5 23.3 183 54-240 23-216 (557)
9 TIGR00387 glcD glycolate oxida 100.0 4.6E-30 1E-34 269.6 20.1 189 66-258 1-196 (413)
10 PRK11282 glcE glycolate oxidas 100.0 1.7E-29 3.7E-34 256.5 20.3 170 71-247 3-181 (352)
11 KOG1231 Proteins containing th 100.0 6.6E-29 1.4E-33 247.7 22.1 173 60-237 61-240 (505)
12 PLN02465 L-galactono-1,4-lacto 100.0 4.3E-28 9.2E-33 258.3 23.0 178 54-239 88-267 (573)
13 PF01565 FAD_binding_4: FAD bi 99.9 1.1E-26 2.5E-31 207.6 14.2 136 63-202 1-137 (139)
14 PRK13905 murB UDP-N-acetylenol 99.9 1.5E-24 3.3E-29 217.6 13.5 164 59-236 27-193 (298)
15 PRK11183 D-lactate dehydrogena 99.9 1.5E-23 3.2E-28 218.5 18.0 196 60-259 36-289 (564)
16 PRK14652 UDP-N-acetylenolpyruv 99.9 2.2E-22 4.8E-27 201.3 14.1 163 59-236 32-196 (302)
17 PRK12436 UDP-N-acetylenolpyruv 99.9 2.5E-22 5.4E-27 201.4 13.7 162 59-235 33-197 (305)
18 TIGR00179 murB UDP-N-acetyleno 99.9 4.2E-22 9.2E-27 198.1 13.5 163 59-234 9-174 (284)
19 KOG4730 D-arabinono-1, 4-lacto 99.9 1.3E-21 2.8E-26 195.8 16.5 183 55-245 42-227 (518)
20 PRK13903 murB UDP-N-acetylenol 99.9 1E-21 2.2E-26 199.8 16.0 164 59-236 29-197 (363)
21 PRK13906 murB UDP-N-acetylenol 99.9 8.3E-22 1.8E-26 197.6 13.6 162 60-235 34-197 (307)
22 KOG1232 Proteins containing th 99.9 1E-21 2.2E-26 191.8 12.3 188 50-241 77-271 (511)
23 KOG1233 Alkyl-dihydroxyacetone 99.8 2E-20 4.3E-25 183.0 16.2 193 55-248 153-352 (613)
24 PRK14649 UDP-N-acetylenolpyruv 99.8 1.2E-19 2.5E-24 181.3 17.4 166 59-235 17-192 (295)
25 PRK14653 UDP-N-acetylenolpyruv 99.8 1.7E-18 3.6E-23 172.3 13.8 162 59-236 30-194 (297)
26 COG0812 MurB UDP-N-acetylmuram 99.8 9.6E-18 2.1E-22 163.6 14.4 170 54-235 11-183 (291)
27 PRK14650 UDP-N-acetylenolpyruv 99.7 1.7E-17 3.8E-22 164.5 13.0 164 59-236 29-195 (302)
28 PRK00046 murB UDP-N-acetylenol 99.7 2.9E-17 6.3E-22 165.3 11.8 163 59-235 17-188 (334)
29 PRK14648 UDP-N-acetylenolpyruv 99.7 1.8E-16 3.8E-21 159.3 13.3 165 60-236 27-237 (354)
30 PF08031 BBE: Berberine and be 99.6 9.9E-17 2.2E-21 114.4 3.0 47 455-511 1-47 (47)
31 PRK14651 UDP-N-acetylenolpyruv 99.6 8.4E-15 1.8E-19 143.4 12.0 157 55-235 12-170 (273)
32 KOG1262 FAD-binding protein DI 99.4 8.5E-14 1.8E-18 137.1 6.3 126 113-240 105-233 (543)
33 PRK13904 murB UDP-N-acetylenol 99.3 5.9E-12 1.3E-16 122.2 10.2 143 61-236 17-160 (257)
34 PF00941 FAD_binding_5: FAD bi 96.1 0.0077 1.7E-07 55.6 4.9 105 64-173 3-116 (171)
35 TIGR02963 xanthine_xdhA xanthi 95.6 0.12 2.5E-06 55.5 12.0 151 63-232 192-358 (467)
36 PRK09971 xanthine dehydrogenas 95.4 0.13 2.8E-06 51.8 10.5 150 65-234 6-175 (291)
37 TIGR03312 Se_sel_red_FAD proba 95.0 0.071 1.5E-06 52.5 7.3 139 66-231 4-154 (257)
38 PRK09799 putative oxidoreducta 94.7 0.11 2.4E-06 51.2 7.8 140 65-231 4-155 (258)
39 PF09265 Cytokin-bind: Cytokin 92.8 0.049 1.1E-06 53.9 1.3 33 477-510 248-280 (281)
40 PLN02906 xanthine dehydrogenas 92.1 0.61 1.3E-05 56.5 9.6 152 64-231 229-405 (1319)
41 TIGR03195 4hydrxCoA_B 4-hydrox 89.9 0.53 1.1E-05 47.9 5.4 100 65-172 6-117 (321)
42 PLN00107 FAD-dependent oxidore 89.7 0.95 2.1E-05 44.1 6.7 27 479-507 171-197 (257)
43 PF02913 FAD-oxidase_C: FAD li 87.9 0.57 1.2E-05 45.1 4.0 65 427-506 180-245 (248)
44 TIGR03199 pucC xanthine dehydr 87.7 0.76 1.6E-05 45.5 4.7 98 69-172 1-109 (264)
45 COG4630 XdhA Xanthine dehydrog 86.2 1.6 3.5E-05 44.4 6.0 141 62-215 202-352 (493)
46 PF04030 ALO: D-arabinono-1,4- 86.2 0.73 1.6E-05 45.4 3.7 27 479-507 228-254 (259)
47 PLN00192 aldehyde oxidase 81.0 3.7 7.9E-05 50.0 7.3 107 63-172 233-352 (1344)
48 TIGR01677 pln_FAD_oxido plant- 78.9 2.9 6.3E-05 45.9 5.1 27 479-507 477-503 (557)
49 TIGR02969 mam_aldehyde_ox alde 78.3 6.6 0.00014 47.8 8.3 79 64-147 237-316 (1330)
50 PLN02805 D-lactate dehydrogena 77.5 3.7 8.1E-05 45.1 5.4 36 477-512 515-551 (555)
51 TIGR00387 glcD glycolate oxida 77.0 2.6 5.6E-05 44.6 3.9 29 478-506 382-411 (413)
52 COG1319 CoxM Aerobic-type carb 76.3 7.9 0.00017 38.6 6.8 77 63-144 3-81 (284)
53 COG4981 Enoyl reductase domain 60.9 17 0.00038 39.0 5.8 67 17-91 113-181 (717)
54 KOG4730 D-arabinono-1, 4-lacto 49.0 9.6 0.00021 40.0 1.6 20 486-505 485-504 (518)
55 PRK11282 glcE glycolate oxidas 46.5 12 0.00025 38.7 1.8 22 485-506 323-345 (352)
56 PF02601 Exonuc_VII_L: Exonucl 46.3 28 0.00062 35.2 4.6 56 34-96 20-87 (319)
57 PLN03213 repressor of silencin 40.5 8.3 0.00018 40.6 -0.3 30 488-521 124-166 (759)
58 COG1519 KdtA 3-deoxy-D-manno-o 39.0 1.6E+02 0.0035 31.0 8.7 34 62-95 260-293 (419)
59 COG0351 ThiD Hydroxymethylpyri 37.0 1E+02 0.0022 30.4 6.6 92 31-151 132-226 (263)
60 PRK00286 xseA exodeoxyribonucl 35.4 40 0.00087 35.9 3.9 56 34-96 141-204 (438)
61 COG4359 Uncharacterized conser 30.6 54 0.0012 30.5 3.3 25 75-99 78-102 (220)
62 TIGR01676 GLDHase galactonolac 30.4 29 0.00063 38.0 1.8 26 479-507 509-534 (541)
63 PLN02465 L-galactono-1,4-lacto 29.6 30 0.00065 38.1 1.8 27 478-507 538-564 (573)
64 cd07033 TPP_PYR_DXS_TK_like Py 28.4 82 0.0018 28.2 4.2 30 64-93 125-154 (156)
65 KOG3282 Uncharacterized conser 27.0 92 0.002 28.8 4.1 37 54-92 118-154 (190)
66 PF02779 Transket_pyr: Transke 25.8 1.1E+02 0.0023 28.1 4.5 32 64-95 139-172 (178)
67 PF10740 DUF2529: Protein of u 24.2 2.1E+02 0.0046 26.3 5.9 63 64-131 85-149 (172)
68 COG1570 XseA Exonuclease VII, 23.7 47 0.001 35.2 1.8 56 34-96 141-205 (440)
69 TIGR00237 xseA exodeoxyribonuc 23.4 52 0.0011 35.0 2.2 56 34-96 135-199 (432)
70 PRK04322 peptidyl-tRNA hydrola 23.1 1.9E+02 0.004 24.6 5.1 38 60-97 45-83 (113)
71 KOG2499 Beta-N-acetylhexosamin 21.3 82 0.0018 33.7 3.0 29 69-97 246-276 (542)
72 cd02429 PTH2_like Peptidyl-tRN 21.2 1.6E+02 0.0035 25.2 4.3 32 61-92 54-85 (116)
73 PF15608 PELOTA_1: PELOTA RNA 20.9 1.2E+02 0.0025 25.3 3.2 50 34-95 39-89 (100)
74 PF01981 PTH2: Peptidyl-tRNA h 20.1 2.2E+02 0.0048 24.1 5.0 38 61-98 49-87 (116)
No 1
>PLN02441 cytokinin dehydrogenase
Probab=100.00 E-value=1.8e-37 Score=327.69 Aligned_cols=189 Identities=21% Similarity=0.268 Sum_probs=167.8
Q ss_pred ccCCCCCCCceEEEecCCHHHHHHHHHHHH--HcCCeEEEEeCCCCCCCCcccCCCCCCeEEEEcCCCCC------e-EE
Q 036220 54 RYLVPSMPKPEFIFTPLYEAHVQAAVICCK--ELGVHLRVRSGGHDYEGLSYVSETETPFIIVDLAKLRS------V-KV 124 (522)
Q Consensus 54 r~~~~~~~~p~~vv~P~t~~dv~~~v~~a~--~~~~~v~~~ggGh~~~~~~~~~d~~~~givIdl~~l~~------i-~~ 124 (522)
.|.......|.+|++|+|++||+++|++|+ +++++|++||+||++.|.+... +|++|||++||+ + ++
T Consensus 56 d~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~~----~GivIdms~Ln~i~~~~~ii~v 131 (525)
T PLN02441 56 DFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQAP----GGVVVDMRSLRGGVRGPPVIVV 131 (525)
T ss_pred CcccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccCC----CeEEEECCCCCCcCccCceEEE
Confidence 577777789999999999999999999997 6699999999999999888765 589999999999 3 78
Q ss_pred eCCCCEEEEcCCCcHHHHHHHHHhcCCcceecCCCCCCccchhhhhCCCCCCcccccCccccceeEEEEEccCCcEec-c
Q 036220 125 DIDDNSAWVQAGATIGEVYYRISEKSKTHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADNVVDARIVDASGRILD-R 203 (522)
Q Consensus 125 d~~~~~v~v~aG~~~~~l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vv~~~G~~~~-~ 203 (522)
|.+..+|+|++|++|.++.+++.++|+. ....+....++|||++++||.|..+.+||..+|+|+++|||+++|++++ +
T Consensus 132 d~~~~~VtV~aG~~~~dv~~~l~~~Gla-P~~~~d~~~~TVGG~ist~G~gg~s~ryG~~~d~Vl~leVVtadGevv~~s 210 (525)
T PLN02441 132 SGDGPYVDVSGGELWIDVLKATLKHGLA-PRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLELDVVTGKGEVVTCS 210 (525)
T ss_pred cCCCCEEEEcCCCCHHHHHHHHHHCCCc-cCCccccCceEEeEEcCCCCccccccccCcHHHhEEEEEEEeCCceEEEeC
Confidence 8889999999999999999999998742 1223566678999999999999999999999999999999999999997 6
Q ss_pred cCCCcchhhhhhccCCCceEEEEEEEEEEEecCceEEEEEEEech
Q 036220 204 EAMGEDFFWAIRGGGGASFGVILAWKIKLVPVPATVTVFTVTKTL 248 (522)
Q Consensus 204 ~~~~~dl~~a~rg~~~g~~Givt~~~lk~~p~p~~~~~~~~~~~~ 248 (522)
+.+|+|||||+|||+ |+|||||+++||++|.|+.+..+.+.+..
T Consensus 211 ~~~n~DLF~Av~Ggl-G~fGIIT~atlrL~Pap~~v~~~~~~y~~ 254 (525)
T PLN02441 211 PTQNSDLFFAVLGGL-GQFGIITRARIALEPAPKRVRWIRVLYSD 254 (525)
T ss_pred CCCChhHHHhhccCC-CCcEEEEEEEEEEEecCCceEEEEEEcCC
Confidence 677999999999988 89999999999999999977666666653
No 2
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=100.00 E-value=4e-33 Score=292.73 Aligned_cols=196 Identities=23% Similarity=0.354 Sum_probs=169.9
Q ss_pred ccCCCCCCCceEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCcccCCCCCCeEEEEcCCCCCe-EEeCCCCEEE
Q 036220 54 RYLVPSMPKPEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETPFIIVDLAKLRSV-KVDIDDNSAW 132 (522)
Q Consensus 54 r~~~~~~~~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~~~~~~~d~~~~givIdl~~l~~i-~~d~~~~~v~ 132 (522)
+|+.+....|.+|+.|+|++||+++|++|++++++|+++|+|||+.+.... ++++|||++||+| ++|+++++|+
T Consensus 6 nW~~~~~~~p~~v~~P~s~eev~~iv~~A~~~~~~v~v~G~GhS~s~~~~~-----~gvvIdl~~l~~i~~id~~~~~vt 80 (438)
T TIGR01678 6 NWAKTYSASPEVYYQPTSVEEVREVLALAREQKKKVKVVGGGHSPSDIACT-----DGFLIHLDKMNKVLQFDKEKKQIT 80 (438)
T ss_pred eCCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEECCCCCCCCCccC-----CeEEEEhhhcCCceEEcCCCCEEE
Confidence 377777889999999999999999999999999999999999999876543 4799999999997 9999999999
Q ss_pred EcCCCcHHHHHHHHHhcCCcceec-CCCCCCccchhhhhCCCCCCcccccCccccceeEEEEEccCCcEec-ccCCCcch
Q 036220 133 VQAGATIGEVYYRISEKSKTHGFP-AGLCTSLGVGGHITGGAYGSMMRKYGLGADNVVDARIVDASGRILD-REAMGEDF 210 (522)
Q Consensus 133 v~aG~~~~~l~~~l~~~g~~~~~~-~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vv~~~G~~~~-~~~~~~dl 210 (522)
|+||+++.+|.+.|.++|+. ++ .|.++.++|||++++|++|. +.+||..+|+|++++||++||++++ ++.+++||
T Consensus 81 V~aG~~l~~L~~~L~~~Gl~--l~~~g~~~~~TvGG~iatg~hG~-~~~~G~~~d~V~~l~vV~~~G~i~~~s~~~~~dl 157 (438)
T TIGR01678 81 VEAGIRLYQLHEQLDEHGYS--MSNLGSISEVSVAGIISTGTHGS-SIKHGILATQVVALTIMTADGEVLECSEERNADV 157 (438)
T ss_pred EcCCCCHHHHHHHHHHcCCE--ecCCCCCCCceeeehhcCCCCCC-ccccCcHHhhEEEEEEEcCCCcEEEeCCCCChhH
Confidence 99999999999999999754 44 57888899999999999997 6899999999999999999999997 56678999
Q ss_pred hhhhhccCCCceEEEEEEEEEEEecCceEEEEEEEechHHHHHHHHHHHHHHH
Q 036220 211 FWAIRGGGGASFGVILAWKIKLVPVPATVTVFTVTKTLEQCATKLLHRWQEVA 263 (522)
Q Consensus 211 ~~a~rg~~~g~~Givt~~~lk~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (522)
||+.+|+. |+|||||+++||++|........ .. ....++++.|++..
T Consensus 158 f~a~~~~~-G~lGIIt~vtl~l~p~~~l~~~~--~~---~~~~~~~~~~~~~~ 204 (438)
T TIGR01678 158 FQAARVSL-GCLGIIVTVTIQVVPQFHLQETS--FV---STLKELLDNWDSHW 204 (438)
T ss_pred HHHHhcCC-CceEeeEEEEEEEEeccceEEEE--ec---CCHHHHHHHHHHHh
Confidence 99999998 89999999999999987544332 11 12346677776654
No 3
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=100.00 E-value=9.1e-33 Score=294.88 Aligned_cols=195 Identities=21% Similarity=0.280 Sum_probs=168.4
Q ss_pred CCCCceEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCcccCCCCCCeEEEEcCCCCCe-EEeCCCCEEEEcCCC
Q 036220 59 SMPKPEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETPFIIVDLAKLRSV-KVDIDDNSAWVQAGA 137 (522)
Q Consensus 59 ~~~~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~~~~~~~d~~~~givIdl~~l~~i-~~d~~~~~v~v~aG~ 137 (522)
....|.+|++|+|++||+++|++|+++++||++||+||++.+.+.... ++++|||++||+| ++|+++.+|+||||+
T Consensus 52 ~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rG~Gt~~~gg~~~~~---~gividl~~ln~I~~id~~~~~v~VeaGv 128 (499)
T PRK11230 52 YRTRPLLVVLPKQMEQVQALLAVCHRLRVPVVARGAGTGLSGGALPLE---KGVLLVMARFNRILDINPVGRRARVQPGV 128 (499)
T ss_pred cCCCCCEEEeeCCHHHHHHHHHHHHHcCCeEEEECCCcCcCCCcccCC---CcEEEEcccCCCceEEcCCCCEEEEcCCc
Confidence 345899999999999999999999999999999999999987665432 5799999999997 999999999999999
Q ss_pred cHHHHHHHHHhcCCcceecCCCCCCccchhhhhCCCCCCcccccCccccceeEEEEEccCCcEeccc-----CCCcchhh
Q 036220 138 TIGEVYYRISEKSKTHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADNVVDARIVDASGRILDRE-----AMGEDFFW 212 (522)
Q Consensus 138 ~~~~l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vv~~~G~~~~~~-----~~~~dl~~ 212 (522)
++.+|.++|.++|+.+.+.++....++|||++++++.|+.+.+||.+.|+|+++|||++||++++.. ..++||+|
T Consensus 129 ~~~~L~~~l~~~Gl~~~~~p~s~~~~tvGG~ia~nagG~~~~~yG~~~d~v~~levVl~~G~i~~~~~~~~~~~g~dl~~ 208 (499)
T PRK11230 129 RNLAISQAAAPHGLYYAPDPSSQIACSIGGNVAENAGGVHCLKYGLTVHNLLKVEILTLDGEALTLGSDALDSPGFDLLA 208 (499)
T ss_pred cHHHHHHHHHHcCCeeCCCCCccccceEcceeccCCCCccceeeCChhhheeEEEEEcCCCcEEEeCCccCCCCccchHh
Confidence 9999999999998643333455556899999999999999999999999999999999999999621 34789999
Q ss_pred hhhccCCCceEEEEEEEEEEEecCceEEEEEEEechHHHHHHHHH
Q 036220 213 AIRGGGGASFGVILAWKIKLVPVPATVTVFTVTKTLEQCATKLLH 257 (522)
Q Consensus 213 a~rg~~~g~~Givt~~~lk~~p~p~~~~~~~~~~~~~~~~~~~~~ 257 (522)
+++|+. |+|||||+++||++|.|+....+.+.|...+++.+++.
T Consensus 209 l~~Gs~-GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~ 252 (499)
T PRK11230 209 LFTGSE-GMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVG 252 (499)
T ss_pred hhccCC-CccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHH
Confidence 999998 89999999999999999987777777755444444443
No 4
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=2.7e-32 Score=291.59 Aligned_cols=185 Identities=26% Similarity=0.372 Sum_probs=163.9
Q ss_pred CCCCceEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCcccCCCCCCeEEEEcCCCCCe-EEeCCCCEEEEcCCC
Q 036220 59 SMPKPEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETPFIIVDLAKLRSV-KVDIDDNSAWVQAGA 137 (522)
Q Consensus 59 ~~~~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~~~~~~~d~~~~givIdl~~l~~i-~~d~~~~~v~v~aG~ 137 (522)
....|.+|+.|+|++||+++|++|.++++||++||+||++.|.+... + ++||||++||+| ++|+++.+|+|+||+
T Consensus 28 ~~~~p~~v~~p~s~~eV~~iv~~a~~~~~~v~prG~gts~~g~~~~~-~---gvvl~l~~mn~i~~id~~~~~~~v~aGv 103 (459)
T COG0277 28 YRGLPLAVVFPKSEEEVAAILRLANENGIPVVPRGGGTSLSGGAVPD-G---GVVLDLSRLNRILEIDPEDGTATVQAGV 103 (459)
T ss_pred hcCCCCEEEccCCHHHHHHHHHHHHHcCCeEEEECCCCCccccccCC-C---cEEEEchhhcchhccCcCCCEEEEcCCc
Confidence 34589999999999999999999999999999999999999877654 2 799999999998 899999999999999
Q ss_pred cHHHHHHHHHhcCCcceecCCCCCCccchhhhhCCCCCCcccccCccccceeEEEEEccCCcEec--c----cCCCcchh
Q 036220 138 TIGEVYYRISEKSKTHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADNVVDARIVDASGRILD--R----EAMGEDFF 211 (522)
Q Consensus 138 ~~~~l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vv~~~G~~~~--~----~~~~~dl~ 211 (522)
++.+|.++|.++|+.+.+.+++...++|||+++++++|..+.+||.+.|+|+++++|++||++++ . +..+.||+
T Consensus 104 ~l~~l~~~l~~~G~~~p~~p~s~~~~tIGG~ia~~~~G~~~~~yG~~~d~v~~l~vV~~dG~i~~~~~~~~k~~~g~dl~ 183 (459)
T COG0277 104 TLEDLEKALAPHGLFLPVDPSSSGTATIGGNIATNAGGLRSLRYGLTRDNVLGLRVVLPDGEILRLGRKLRKDNAGYDLT 183 (459)
T ss_pred cHHHHHHHHHHcCCccCCCccccccceEccchhcCCCCccceecccHHHheeEEEEEcCCceehhhcCcccCCCCCCCHH
Confidence 99999999999987655555665689999999999999999999999999999999999999996 1 23458999
Q ss_pred hhhhccCCCceEEEEEEEEEEEecCceEEEEEEEech
Q 036220 212 WAIRGGGGASFGVILAWKIKLVPVPATVTVFTVTKTL 248 (522)
Q Consensus 212 ~a~rg~~~g~~Givt~~~lk~~p~p~~~~~~~~~~~~ 248 (522)
++..||. |+|||||+++||++|.|+........+..
T Consensus 184 ~l~iGs~-GtlGiit~~tl~l~p~~~~~~~~~~~~~~ 219 (459)
T COG0277 184 ALFVGSE-GTLGIITEATLKLLPLPETKATAVAGFPS 219 (459)
T ss_pred HhcccCC-ccceEEEEEEEEeccCCchheEEEEeCCC
Confidence 9998877 99999999999999998876665555443
No 5
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=100.00 E-value=1e-31 Score=281.85 Aligned_cols=195 Identities=21% Similarity=0.305 Sum_probs=162.6
Q ss_pred ccCCCCCCCceEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCcccCCCCCCeEEEEcCCCCCe-EEeCCCCEEE
Q 036220 54 RYLVPSMPKPEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETPFIIVDLAKLRSV-KVDIDDNSAW 132 (522)
Q Consensus 54 r~~~~~~~~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~~~~~~~d~~~~givIdl~~l~~i-~~d~~~~~v~ 132 (522)
+|+......|.+|+.|+|++||+++|+.|++ +|+++|+|||+.+.+.. ++++|||++||+| ++|+++++|+
T Consensus 3 nW~~~~~~~p~~v~~P~s~~ev~~~v~~a~~---~v~~~G~Ghs~~~~~~~-----~g~~idl~~l~~i~~~d~~~~~v~ 74 (419)
T TIGR01679 3 NWSGEQVAAPSAIVRPTDEGELADVIAQAAK---PVRAVGSGHSFTDLACT-----DGTMISLTGLQGVVDVDQPTGLAT 74 (419)
T ss_pred CCCCCccCCCCeEECCCCHHHHHHHHHHhCC---CEEEEeCCCCCCCcccC-----CCEEEEhhHcCCceeecCCCCEEE
Confidence 3777777899999999999999999999974 79999999999876542 3699999999997 9999999999
Q ss_pred EcCCCcHHHHHHHHHhcCCcceecCCCCCCccchhhhhCCCCCCcccccCccccceeEEEEEccCCcEec-ccCCCcchh
Q 036220 133 VQAGATIGEVYYRISEKSKTHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADNVVDARIVDASGRILD-REAMGEDFF 211 (522)
Q Consensus 133 v~aG~~~~~l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vv~~~G~~~~-~~~~~~dl~ 211 (522)
||||+++.+|.+.|.++|+.++.. |....++|||.+++|++|.. .+||..+|+|++++||++||++++ ++.++||||
T Consensus 75 v~aG~~l~~l~~~L~~~G~~l~~~-~~~~~~tvGG~ia~~~hG~g-~~~G~~~d~V~~l~vV~a~G~v~~~~~~~~~dLf 152 (419)
T TIGR01679 75 VEAGTRLGALGPQLAQRGLGLENQ-GDIDPQSIGGALGTATHGTG-VRFQALHARIVSLRLVTAGGKVLDLSEGDDQDMY 152 (419)
T ss_pred EcCCCCHHHHHHHHHHcCCccccC-CCCCCceeccceecCCCCCC-ccCCchhhhEEEEEEEcCCCCEEEEcCCCCHHHH
Confidence 999999999999999998654333 44556889999999999974 689999999999999999999997 666789999
Q ss_pred hhhhccCCCceEEEEEEEEEEEecCceEEEEEEEechHHHHHHHHHHHHHHHh
Q 036220 212 WAIRGGGGASFGVILAWKIKLVPVPATVTVFTVTKTLEQCATKLLHRWQEVAD 264 (522)
Q Consensus 212 ~a~rg~~~g~~Givt~~~lk~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (522)
||+|||+ |+|||||++|||++|.++...... ..+ ..++++.+.++..
T Consensus 153 ~a~~g~~-G~lGVIt~vtl~~~p~~~~~~~~~-~~~----~~~~~~~~~~~~~ 199 (419)
T TIGR01679 153 LAARVSL-GALGVISQVTLQTVALFRLRRRDW-RRP----LAQTLERLDEFVD 199 (419)
T ss_pred HHHHhCC-CceEEEEEEEEEeecceEeEEEEE-ecC----HHHHHHHHHHHHh
Confidence 9999998 899999999999999875443321 112 2344555555543
No 6
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=100.00 E-value=2.1e-32 Score=293.49 Aligned_cols=192 Identities=21% Similarity=0.314 Sum_probs=168.9
Q ss_pred CCceEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCcccCCCCCCeEEEEcCCCCCe-EEeCCCCEEEEcCCCcH
Q 036220 61 PKPEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETPFIIVDLAKLRSV-KVDIDDNSAWVQAGATI 139 (522)
Q Consensus 61 ~~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~~~~~~~d~~~~givIdl~~l~~i-~~d~~~~~v~v~aG~~~ 139 (522)
..|.+|++|+|++||+++|++|+++++|++++|||||+.|.+...+ ++++|||++||+| ++|+++.+|+||||+++
T Consensus 132 ~~P~~Vv~P~s~eeV~~ivk~a~~~~ipv~prGgGts~~G~~~~~~---ggivIdl~~mn~I~~id~~~~~vtVeaGv~~ 208 (555)
T PLN02805 132 NIPDVVVFPRSEEEVSKIVKSCNKYKVPIVPYGGATSIEGHTLAPH---GGVCIDMSLMKSVKALHVEDMDVVVEPGIGW 208 (555)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCccCCC---CEEEEEccCCCCeEEEeCCCCEEEEeCCcCH
Confidence 4799999999999999999999999999999999999998776542 5899999999998 79999999999999999
Q ss_pred HHHHHHHHhcCCcceecCCCCCCccchhhhhCCCCCCcccccCccccceeEEEEEccCCcEec--cc----CCCcchhhh
Q 036220 140 GEVYYRISEKSKTHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADNVVDARIVDASGRILD--RE----AMGEDFFWA 213 (522)
Q Consensus 140 ~~l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vv~~~G~~~~--~~----~~~~dl~~a 213 (522)
.+|+++|.++|+ .++...++.++|||.++++++|..+.+||.++|+|+++|||++||++++ .+ ..++||+|+
T Consensus 209 ~~L~~~L~~~Gl--~~p~~p~~~~TIGG~ia~n~~G~~s~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~l 286 (555)
T PLN02805 209 LELNEYLEPYGL--FFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRL 286 (555)
T ss_pred HHHHHHHHHcCC--EeCCCCccccChhhHhhCCCcccccCccccHHHhEEEEEEEcCCceEEEecCccccCCCCccHHHH
Confidence 999999999975 4566555778999999999999999999999999999999999999995 11 246899999
Q ss_pred hhccCCCceEEEEEEEEEEEecCceEEEEEEEechHHHHHHHHHH
Q 036220 214 IRGGGGASFGVILAWKIKLVPVPATVTVFTVTKTLEQCATKLLHR 258 (522)
Q Consensus 214 ~rg~~~g~~Givt~~~lk~~p~p~~~~~~~~~~~~~~~~~~~~~~ 258 (522)
++|+. |+|||||+++||++|.|+......+.|+..+++.+++..
T Consensus 287 ~~Gse-GtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av~~ 330 (555)
T PLN02805 287 VIGSE-GTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVAIA 330 (555)
T ss_pred hccCC-CceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHHHHH
Confidence 99988 899999999999999999877777777654455554433
No 7
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=100.00 E-value=1e-31 Score=283.79 Aligned_cols=197 Identities=18% Similarity=0.208 Sum_probs=169.7
Q ss_pred ccCCCCCCCceEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCcccCCCCCCeEEEEcCCCCCe-EEeCCCCEEE
Q 036220 54 RYLVPSMPKPEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETPFIIVDLAKLRSV-KVDIDDNSAW 132 (522)
Q Consensus 54 r~~~~~~~~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~~~~~~~d~~~~givIdl~~l~~i-~~d~~~~~v~ 132 (522)
+|+.+....|..+++|+|++||+++|+.|++++++|+++|+|||+.+.+... +.+|||++||+| ++|+++++|+
T Consensus 53 NWsg~~~~~p~~~~~P~s~eEV~~iV~~A~~~g~~Vr~~GsGhS~sg~a~t~-----g~lldL~~ln~Vl~vD~~~~tVt 127 (541)
T TIGR01676 53 NWSGTHEVLTRTFHQPEAIEELEGIVKQANEKKARIRPVGSGLSPNGIGLSR-----AGMVNLALMDKVLEVDEEKKRVR 127 (541)
T ss_pred ccCCccccCcceEECCCCHHHHHHHHHHHHHcCCcEEEECCCcCCCCcccCC-----CeEEEhhhCCCCEEEcCCCCEEE
Confidence 4999888999999999999999999999999999999999999999877654 357999999997 9999999999
Q ss_pred EcCCCcHHHHHHHHHhcCCcceecCCCCCCccchhhhhCCCCCCcccccCccccceeEEEEEccCCcEec-ccCCCcchh
Q 036220 133 VQAGATIGEVYYRISEKSKTHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADNVVDARIVDASGRILD-REAMGEDFF 211 (522)
Q Consensus 133 v~aG~~~~~l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vv~~~G~~~~-~~~~~~dl~ 211 (522)
|+||+++.+|.+.|.++|+.+ ...|.+..++|||.+++|+||.. .+||..+|+|++++||+++|+++. ++.+++|||
T Consensus 128 V~AG~~l~~L~~~L~~~Glal-~n~gsi~~~TIGGaiatgtHGtg-~~~G~l~d~V~~l~lVta~G~vv~~s~~~~pdLF 205 (541)
T TIGR01676 128 VQAGIRVQQLVDAIKEYGITL-QNFASIREQQIGGIIQVGAHGTG-AKLPPIDEQVIAMKLVTPAKGTIEISKDKDPELF 205 (541)
T ss_pred EcCCCCHHHHHHHHHHcCCEe-ccCCCCCCceEccccccCCcCCC-CCCCCHHHhEEEEEEEECCCCEEEECCCCCHHHH
Confidence 999999999999999997533 23478888999999999999985 579999999999999999999997 566789999
Q ss_pred hhhhccCCCceEEEEEEEEEEEecCceEEEEEEEechHHHHHHHHHHHHHHH
Q 036220 212 WAIRGGGGASFGVILAWKIKLVPVPATVTVFTVTKTLEQCATKLLHRWQEVA 263 (522)
Q Consensus 212 ~a~rg~~~g~~Givt~~~lk~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (522)
||.|||. |+|||||++|||+.|.+..... ....+ ..++++.+.++.
T Consensus 206 ~Aargsl-G~LGVItevTLr~~Pa~~l~~~-~~~~~----~~e~l~~~~~~~ 251 (541)
T TIGR01676 206 FLARCGL-GGLGVVAEVTLQCVERQELVEH-TFISN----MKDIKKNHKKFL 251 (541)
T ss_pred HHHhcCC-CceEeEEEEEEEEEeccceeEE-EEecC----HHHHHHHHHHHH
Confidence 9999998 8999999999999999874322 22222 345566666554
No 8
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=99.97 E-value=5.2e-30 Score=274.49 Aligned_cols=183 Identities=21% Similarity=0.235 Sum_probs=159.5
Q ss_pred ccCCCCCCCceEEEecCCHHHHHHHHHHHHHcCCeEEEEe-CCCCCCCCcccCCCCCCeEEEEcCCCCC-eEEeCCCCEE
Q 036220 54 RYLVPSMPKPEFIFTPLYEAHVQAAVICCKELGVHLRVRS-GGHDYEGLSYVSETETPFIIVDLAKLRS-VKVDIDDNSA 131 (522)
Q Consensus 54 r~~~~~~~~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~g-gGh~~~~~~~~~d~~~~givIdl~~l~~-i~~d~~~~~v 131 (522)
+|+.+....|.+|++|+|++||+++|++|+++++||+++| +||++.+.+...+ .+++++|||++||+ +++|+++++|
T Consensus 23 nWag~~~~~p~~vv~P~s~eeV~~iV~~A~~~g~~v~v~GG~gHs~~~~a~t~~-~~ggvvIdL~~Ln~il~iD~~~~tV 101 (557)
T TIGR01677 23 AFPDRSTCRAANVAYPKTEAELVSVVAAATAAGRKMKVVTRYSHSIPKLACPDG-SDGALLISTKRLNHVVAVDATAMTV 101 (557)
T ss_pred hcCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCcCcccccCC-CCCEEEEEcccCCCCEEEeCCCCEE
Confidence 4999999999999999999999999999999999999996 6999876554321 12469999999999 5999999999
Q ss_pred EEcCCCcHHHHHHHHHhcCCcceecC-CCCCCccchhhhhCCCCCCcc-cccCccccceeEEEEEccCC------cEec-
Q 036220 132 WVQAGATIGEVYYRISEKSKTHGFPA-GLCTSLGVGGHITGGAYGSMM-RKYGLGADNVVDARIVDASG------RILD- 202 (522)
Q Consensus 132 ~v~aG~~~~~l~~~l~~~g~~~~~~~-g~~~~vgigG~~~ggg~g~~~-~~~G~~~d~v~~~~vv~~~G------~~~~- 202 (522)
+|+||+++.+|.+.|.++|+ .++. +....++|||.+++|++|... ++||..+|+|++++||+++| ++++
T Consensus 102 tV~AG~~l~~L~~~L~~~Gl--al~~~~~~~~~TVGGaiatGthGs~~~~~~G~l~d~V~~l~vV~a~G~a~G~~~v~~~ 179 (557)
T TIGR01677 102 TVESGMSLRELIVEAEKAGL--ALPYAPYWWGLTVGGMMGTGAHGSSLWGKGSAVHDYVVGIRLVVPASAAEGFAKVRIL 179 (557)
T ss_pred EECCCCcHHHHHHHHHHcCC--EeccCCCCCCeEeeEhhhCCCCCccccccccchhheEEEEEEEeCCCcccCcceEEEe
Confidence 99999999999999999975 4444 455678999999999999766 58899999999999999998 7776
Q ss_pred ccCCCcchhhhhhccCCCceEEEEEEEEEEEecCceEE
Q 036220 203 REAMGEDFFWAIRGGGGASFGVILAWKIKLVPVPATVT 240 (522)
Q Consensus 203 ~~~~~~dl~~a~rg~~~g~~Givt~~~lk~~p~p~~~~ 240 (522)
++.+++|||||+|||+ |+|||||++|||++|.+....
T Consensus 180 s~~~~~dLf~a~rgsl-G~lGVVtevTL~~~P~~~~~~ 216 (557)
T TIGR01677 180 SEGDTPNEFNAAKVSL-GVLGVISQVTLALQPMFKRSV 216 (557)
T ss_pred CCCCCHHHHHhhccCC-CccEeeeEEEEEEEccccceE
Confidence 5567899999999998 999999999999999876433
No 9
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=99.97 E-value=4.6e-30 Score=269.62 Aligned_cols=189 Identities=22% Similarity=0.274 Sum_probs=163.3
Q ss_pred EEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCcccCCCCCCeEEEEcCCCCCe-EEeCCCCEEEEcCCCcHHHHHH
Q 036220 66 IFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETPFIIVDLAKLRSV-KVDIDDNSAWVQAGATIGEVYY 144 (522)
Q Consensus 66 vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~~~~~~~d~~~~givIdl~~l~~i-~~d~~~~~v~v~aG~~~~~l~~ 144 (522)
||+|+|++||+++|++|+++++||+++|+|||+.|.+...+ ++++|||++||+| ++|+++.+++||||+++.+|.+
T Consensus 1 Vv~P~s~eev~~iv~~a~~~~i~v~~~G~Gt~~~g~~~~~~---~~vvidl~~mn~i~~id~~~~~v~veaGv~~~~l~~ 77 (413)
T TIGR00387 1 VVFPKNTEQVARILKLCHEHRIPIVPRGAGTGLSGGALPEE---GGLVLVFKHMNKILEIDVVNLTAVVQPGVRNLELEQ 77 (413)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEECCCCCCCCCccCCC---CeEEEEhHHcCceeEEcCCCCEEEEcCCccHHHHHH
Confidence 57899999999999999999999999999999987665542 5899999999998 9999999999999999999999
Q ss_pred HHHhcCCcceecCCCCCCccchhhhhCCCCCCcccccCccccceeEEEEEccCCcEecc------cCCCcchhhhhhccC
Q 036220 145 RISEKSKTHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADNVVDARIVDASGRILDR------EAMGEDFFWAIRGGG 218 (522)
Q Consensus 145 ~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vv~~~G~~~~~------~~~~~dl~~a~rg~~ 218 (522)
+|.++|+.+.+.++....++|||.+++++.|..+.+||.+.|+|++++||++||++++. ...++||++.++|+.
T Consensus 78 ~l~~~gl~~~~~p~s~~~~tiGG~ia~na~G~~~~~yG~~~d~v~~l~vV~~~G~~~~~~~~~~~~~~g~dl~~l~~Gs~ 157 (413)
T TIGR00387 78 AVEEHNLFYPPDPSSQISSTIGGNIAENAGGMRGLKYGTTVDYVLGLEVVTADGEILRIGGKTAKDVAGYDLTGLFVGSE 157 (413)
T ss_pred HHHHcCCeeCCCCcccccceehhhhhcCCCCCcceeeccHHhheeeEEEEeCCCCEEEeCCcccCCCCCCChhhhcccCC
Confidence 99999865444455556688999999999999999999999999999999999999962 234689999999988
Q ss_pred CCceEEEEEEEEEEEecCceEEEEEEEechHHHHHHHHHH
Q 036220 219 GASFGVILAWKIKLVPVPATVTVFTVTKTLEQCATKLLHR 258 (522)
Q Consensus 219 ~g~~Givt~~~lk~~p~p~~~~~~~~~~~~~~~~~~~~~~ 258 (522)
|+|||||+++||++|.|+....+.+.+...+++.+++..
T Consensus 158 -GtlGiit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~ 196 (413)
T TIGR00387 158 -GTLGIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYD 196 (413)
T ss_pred -ccceEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHH
Confidence 899999999999999999776666666654444444433
No 10
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=99.97 E-value=1.7e-29 Score=256.46 Aligned_cols=170 Identities=22% Similarity=0.316 Sum_probs=147.6
Q ss_pred CHHHHHHHHHHHHHcCCeEEEEeCCC-CCCCCcccCCCCCCeEEEEcCCCCCe-EEeCCCCEEEEcCCCcHHHHHHHHHh
Q 036220 71 YEAHVQAAVICCKELGVHLRVRSGGH-DYEGLSYVSETETPFIIVDLAKLRSV-KVDIDDNSAWVQAGATIGEVYYRISE 148 (522)
Q Consensus 71 t~~dv~~~v~~a~~~~~~v~~~ggGh-~~~~~~~~~d~~~~givIdl~~l~~i-~~d~~~~~v~v~aG~~~~~l~~~l~~ 148 (522)
.++||+++|++|+++++||.++|||| ++.+.+. .+++|||++||+| ++|+++.+|+|+||+++.+|.++|.+
T Consensus 3 ~~~ev~~~v~~A~~~~~~v~~~GgGt~~~~g~~~------~~~vldl~~ln~Ile~d~~~~~vtV~AG~~l~el~~~L~~ 76 (352)
T PRK11282 3 ISAALLERVRQAAADGTPLRIRGGGSKDFYGRAL------AGEVLDTRAHRGIVSYDPTELVITARAGTPLAELEAALAE 76 (352)
T ss_pred hHHHHHHHHHHHHHCCCeEEEECCCCCCCCCCCC------CCeEEEcccCCCcEEEcCCCCEEEECCCCCHHHHHHHHHH
Confidence 47999999999999999999999997 4555532 2479999999998 99999999999999999999999999
Q ss_pred cCCcceecCC-CCCCccchhhhhCCCCCCcccccCccccceeEEEEEccCCcEecc------cCCCcchhhhhhccCCCc
Q 036220 149 KSKTHGFPAG-LCTSLGVGGHITGGAYGSMMRKYGLGADNVVDARIVDASGRILDR------EAMGEDFFWAIRGGGGAS 221 (522)
Q Consensus 149 ~g~~~~~~~g-~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vv~~~G~~~~~------~~~~~dl~~a~rg~~~g~ 221 (522)
+|+.+++.++ .+..++|||++++|++|..+.+||..+|+|+++++|++||++++. +..++||||+++||. |+
T Consensus 77 ~G~~lp~~p~~~~~~~TIGG~iatg~~G~~~~~yG~~~D~Vlg~~vV~~~Gei~~~gg~v~kn~~G~DL~~l~~Gs~-Gt 155 (352)
T PRK11282 77 AGQMLPFEPPHFGGGATLGGMVAAGLSGPRRPWAGAVRDFVLGTRLINGRGEHLRFGGQVMKNVAGYDVSRLMAGSL-GT 155 (352)
T ss_pred cCCeeCCCCCCcCCCcEehhHHhcCCCCccccccCCHHHhEeeEEEEcCCceEEEeCCcccCCCCCchHHHHHhhCC-ch
Confidence 9876655443 444689999999999999999999999999999999999999962 235789999999998 99
Q ss_pred eEEEEEEEEEEEecCceEEEEEEEec
Q 036220 222 FGVILAWKIKLVPVPATVTVFTVTKT 247 (522)
Q Consensus 222 ~Givt~~~lk~~p~p~~~~~~~~~~~ 247 (522)
|||||+++||++|.|+....+.+.++
T Consensus 156 LGVitevtlkl~P~p~~~~t~~~~~~ 181 (352)
T PRK11282 156 LGVLLEVSLKVLPRPRAELTLRLEMD 181 (352)
T ss_pred hhhheEEEEEEEecCceEEEEEEecC
Confidence 99999999999999987655555543
No 11
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.97 E-value=6.6e-29 Score=247.68 Aligned_cols=173 Identities=24% Similarity=0.371 Sum_probs=150.5
Q ss_pred CCCceEEEecCCHHHHHHHHHHHHHc--CCeEEEEeCCCCCCCCcccCCCCCCeEEEEcC---CCCCe-EEeCCCCEEEE
Q 036220 60 MPKPEFIFTPLYEAHVQAAVICCKEL--GVHLRVRSGGHDYEGLSYVSETETPFIIVDLA---KLRSV-KVDIDDNSAWV 133 (522)
Q Consensus 60 ~~~p~~vv~P~t~~dv~~~v~~a~~~--~~~v~~~ggGh~~~~~~~~~d~~~~givIdl~---~l~~i-~~d~~~~~v~v 133 (522)
+..|.+|+.|+|++||++++|.|... .+||.+||+|||..|.+... .+|+||.|+ .|+++ .+..++..|.|
T Consensus 61 ~~~P~aVL~P~S~edVs~ilk~~~~~~s~~pVaarG~GhSl~Gqa~a~---~~GvvV~m~~~~~~~~~~~~~~~~~yvdV 137 (505)
T KOG1231|consen 61 QLPPLAVLFPSSVEDVSKILKHCNDYGSNFPVAARGGGHSLEGQALAT---RGGVVVCMDSSLLMKDVPVLVVDDLYVDV 137 (505)
T ss_pred CCCCeeEEcCCCHHHHHHHHHHHhccCCcceeeccCCcccccCccccC---CCCeEEEEehhhccCCCceeecccceEEe
Confidence 45999999999999999999999999 89999999999999988773 257766654 46665 56667789999
Q ss_pred cCCCcHHHHHHHHHhcCCcceecCCCCCCccchhhhhCCCCCCcccccCccccceeEEEEEccCCcEec-ccCCCcchhh
Q 036220 134 QAGATIGEVYYRISEKSKTHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADNVVDARIVDASGRILD-REAMGEDFFW 212 (522)
Q Consensus 134 ~aG~~~~~l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vv~~~G~~~~-~~~~~~dl~~ 212 (522)
.||..|-+|.+++.++|+.-.+.....+ .+|||+++.+|.|.++.+||...+||++++|||++|++++ ++..|++||+
T Consensus 138 ~~g~~Widll~~t~e~GL~p~swtDyl~-ltVGGtlsnagiggqafRyGpqi~NV~~LdVVtgkGeiv~cs~r~n~~lf~ 216 (505)
T KOG1231|consen 138 SAGTLWIDLLDYTLEYGLSPFSWTDYLP-LTVGGTLSNAGIGGQAFRYGPQISNVIELDVVTGKGEIVTCSKRANSNLFF 216 (505)
T ss_pred eCChhHHHHHHHHHHcCCCccCcCCccc-eeecceeccCccccceeeccchhhceEEEEEEcCCCcEEecccccCceeee
Confidence 9999999999999999862122332223 8899999999999999999999999999999999999997 6678999999
Q ss_pred hhhccCCCceEEEEEEEEEEEecCc
Q 036220 213 AIRGGGGASFGVILAWKIKLVPVPA 237 (522)
Q Consensus 213 a~rg~~~g~~Givt~~~lk~~p~p~ 237 (522)
++.||. |+|||||+++++++|+|+
T Consensus 217 ~vlGgl-GqfGIITrArI~le~aP~ 240 (505)
T KOG1231|consen 217 LVLGGL-GQFGIITRARIKLEPAPK 240 (505)
T ss_pred eeeccC-cceeeEEEEEEEeccCCc
Confidence 999998 999999999999999994
No 12
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=99.96 E-value=4.3e-28 Score=258.30 Aligned_cols=178 Identities=21% Similarity=0.253 Sum_probs=158.6
Q ss_pred ccCCCCCCCceEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCcccCCCCCCeEEEEcCCCCCe-EEeCCCCEEE
Q 036220 54 RYLVPSMPKPEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETPFIIVDLAKLRSV-KVDIDDNSAW 132 (522)
Q Consensus 54 r~~~~~~~~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~~~~~~~d~~~~givIdl~~l~~i-~~d~~~~~v~ 132 (522)
+|+.+..+.|.+++.|+|++||+++|++|++++++|+++|+|||+.+....+ +.+|||++||+| ++|++.++|+
T Consensus 88 NWsg~~~~~p~~vv~P~S~eEV~~iV~~A~~~g~~VrvvGsGhS~~~l~~td-----~glIdL~~l~~Il~vD~e~~~Vt 162 (573)
T PLN02465 88 NWSGTHEVQTRRYHQPESLEELEDIVKEAHEKGRRIRPVGSGLSPNGLAFSR-----EGMVNLALMDKVLEVDKEKKRVT 162 (573)
T ss_pred ccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCcCCCCeeeCC-----CEEEECcCCCCcEEEeCCCCEEE
Confidence 5999999999999999999999999999999999999999999998776544 346899999997 9999999999
Q ss_pred EcCCCcHHHHHHHHHhcCCcceecCCCCCCccchhhhhCCCCCCcccccCccccceeEEEEEccCCcEec-ccCCCcchh
Q 036220 133 VQAGATIGEVYYRISEKSKTHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADNVVDARIVDASGRILD-REAMGEDFF 211 (522)
Q Consensus 133 v~aG~~~~~l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vv~~~G~~~~-~~~~~~dl~ 211 (522)
|+||+++.+|.+.|.++|+.+.. .|.....+|||.+++|+||... .+|..+|+|++++||+++|++++ +..+++|||
T Consensus 163 V~AG~~l~~L~~~L~~~GLal~n-~g~I~~~TIGGaIstGtHGtG~-~~g~i~d~V~~l~lVta~G~vv~~s~~~~pdLF 240 (573)
T PLN02465 163 VQAGARVQQVVEALRPHGLTLQN-YASIREQQIGGFIQVGAHGTGA-RIPPIDEQVVSMKLVTPAKGTIELSKEDDPELF 240 (573)
T ss_pred EccCCCHHHHHHHHHHcCCEecc-CCCCCCeeecchhhCCCCCcCC-CcCcHhheEEEEEEEECCCCEEEECCCCCHHHH
Confidence 99999999999999999864332 2555678999999999999864 68999999999999999999887 556689999
Q ss_pred hhhhccCCCceEEEEEEEEEEEecCceE
Q 036220 212 WAIRGGGGASFGVILAWKIKLVPVPATV 239 (522)
Q Consensus 212 ~a~rg~~~g~~Givt~~~lk~~p~p~~~ 239 (522)
|+.|++. |.|||||+++||+.|.++..
T Consensus 241 ~aar~gl-G~lGVIteVTLql~P~~~L~ 267 (573)
T PLN02465 241 RLARCGL-GGLGVVAEVTLQCVPAHRLV 267 (573)
T ss_pred hHhhccC-CCCcEEEEEEEEEEecCceE
Confidence 9999988 89999999999999988643
No 13
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=99.94 E-value=1.1e-26 Score=207.57 Aligned_cols=136 Identities=33% Similarity=0.521 Sum_probs=124.9
Q ss_pred ceEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCcccCCCCCCeEEEEcCCCCC-eEEeCCCCEEEEcCCCcHHH
Q 036220 63 PEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETPFIIVDLAKLRS-VKVDIDDNSAWVQAGATIGE 141 (522)
Q Consensus 63 p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~~~~~~~d~~~~givIdl~~l~~-i~~d~~~~~v~v~aG~~~~~ 141 (522)
|.+|++|+|++||+++|++|+++++|+.++|+||++.+.+... ++++|||++||+ +++|+++++++|+||+++.+
T Consensus 1 P~~vv~P~s~~ev~~~v~~a~~~~~~v~~~g~G~~~~~~~~~~----~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~ 76 (139)
T PF01565_consen 1 PAAVVRPKSVEEVQAIVKFANENGVPVRVRGGGHSWTGQSSDE----GGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGD 76 (139)
T ss_dssp ESEEEEESSHHHHHHHHHHHHHTTSEEEEESSSTTSSSTTSST----TEEEEECTTCGCEEEEETTTTEEEEETTSBHHH
T ss_pred CcEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCCcccccccC----CcEEEeeccccccccccccceeEEEeccccchh
Confidence 7899999999999999999999999999999999999766533 689999999999 59999999999999999999
Q ss_pred HHHHHHhcCCcceecCCCCCCccchhhhhCCCCCCcccccCccccceeEEEEEccCCcEec
Q 036220 142 VYYRISEKSKTHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADNVVDARIVDASGRILD 202 (522)
Q Consensus 142 l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vv~~~G~~~~ 202 (522)
|+++|.++|+.+.+.++.+..++|||++++|++|..++.||..+|+|+++|+|++||++++
T Consensus 77 l~~~l~~~g~~~~~~~~~~~~~tvGG~i~~~~~g~~~~~~G~~~d~v~~~~~V~~~G~v~~ 137 (139)
T PF01565_consen 77 LYEALAPRGLMLPVEPGSGIPGTVGGAIAGNGHGSGSRRYGTAADNVLSVEVVLADGEVVR 137 (139)
T ss_dssp HHHHHHHHTEEESSGGGSTTTSBHHHHHHTT-EETTHHHHCBGGGGEEEEEEEETTSSEEE
T ss_pred cccccccccccccccccccccceEchhhcCCCccccccccccHHHeEEEEEEEcCCCcEEE
Confidence 9999999876544457888889999999999999999999999999999999999999985
No 14
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.91 E-value=1.5e-24 Score=217.63 Aligned_cols=164 Identities=21% Similarity=0.242 Sum_probs=134.9
Q ss_pred CCCCceEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCcccCCCCCCeEEEEcCC-CCCeEEeCCCCEEEEcCCC
Q 036220 59 SMPKPEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETPFIIVDLAK-LRSVKVDIDDNSAWVQAGA 137 (522)
Q Consensus 59 ~~~~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~~~~~~~d~~~~givIdl~~-l~~i~~d~~~~~v~v~aG~ 137 (522)
....|.+++.|+|++||+++|++|+++++|+.++|+|||+.. .|++.++++|+|++ |+.|++ ++.+|+|+||+
T Consensus 27 igg~a~~vv~P~s~edv~~~v~~a~~~~~p~~v~GgGsnll~----~d~g~~gvvI~l~~~l~~i~~--~~~~v~v~aG~ 100 (298)
T PRK13905 27 VGGPADYLVEPADIEDLQEFLKLLKENNIPVTVLGNGSNLLV----RDGGIRGVVIRLGKGLNEIEV--EGNRITAGAGA 100 (298)
T ss_pred cCceEeEEEeCCCHHHHHHHHHHHHHcCCCEEEEeCCceEEe----cCCCcceEEEEecCCcceEEe--cCCEEEEECCC
Confidence 345899999999999999999999999999999999999763 22223589999998 998855 45789999999
Q ss_pred cHHHHHHHHHhcCCcceecCCCCCCccchhhhhCCCCCCcccccC-ccccceeEEEEEccCCcEecccCCCcchhhhhhc
Q 036220 138 TIGEVYYRISEKSKTHGFPAGLCTSLGVGGHITGGAYGSMMRKYG-LGADNVVDARIVDASGRILDREAMGEDFFWAIRG 216 (522)
Q Consensus 138 ~~~~l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G-~~~d~v~~~~vv~~~G~~~~~~~~~~dl~~a~rg 216 (522)
++.+|.+++.++|+ .|.+..+|++|. .||+.+++++.|| .++|+|+++++|++||++++.. +.|++|+||+
T Consensus 101 ~~~~L~~~l~~~Gl-----~gle~~~gipGT-VGGai~~NaG~~G~~~~d~v~~v~vv~~~G~~~~~~--~~e~~~~yR~ 172 (298)
T PRK13905 101 PLIKLARFAAEAGL-----SGLEFAAGIPGT-VGGAVFMNAGAYGGETADVLESVEVLDRDGEIKTLS--NEELGFGYRH 172 (298)
T ss_pred cHHHHHHHHHHcCC-----CcchhccCCCcc-hhHHHHHcCCcCceEhheeEEEEEEEeCCCCEEEEE--HHHcCCcCcc
Confidence 99999999999986 234444455553 3666667777787 6899999999999999999754 3499999999
Q ss_pred cCCC-ceEEEEEEEEEEEecC
Q 036220 217 GGGA-SFGVILAWKIKLVPVP 236 (522)
Q Consensus 217 ~~~g-~~Givt~~~lk~~p~p 236 (522)
+..+ .+||||+++||++|..
T Consensus 173 s~~~~~~gII~~~~l~l~~~~ 193 (298)
T PRK13905 173 SALQEEGLIVLSATFQLEPGD 193 (298)
T ss_pred ccCCCCCEEEEEEEEEEcCCC
Confidence 8744 4899999999999863
No 15
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=99.91 E-value=1.5e-23 Score=218.49 Aligned_cols=196 Identities=13% Similarity=0.160 Sum_probs=160.3
Q ss_pred CCCceEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCcccCCCC--CCeEEEEcCCCCCe-EEeCCCCEEEEcCC
Q 036220 60 MPKPEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETE--TPFIIVDLAKLRSV-KVDIDDNSAWVQAG 136 (522)
Q Consensus 60 ~~~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~~~~~~~d~~--~~givIdl~~l~~i-~~d~~~~~v~v~aG 136 (522)
...|.+||+|.|++||+++|++|.++++||++||||+++.|.+.+.+++ .++|||||.+||+| +|| ++..++|+||
T Consensus 36 ~g~P~AVV~P~SteEVa~IVklC~e~~vPVIPRGgGTGLtGGAvP~~~~~dR~gVVIsl~RMNrIleID-~~~~VvVePG 114 (564)
T PRK11183 36 QGDALAVVFPGTLLELWRVLQACVAADKIIIMQAANTGLTGGSTPNGNDYDRDIVIISTLRLDKIQLLN-NGKQVLALPG 114 (564)
T ss_pred CCCCCEEEecCCHHHHHHHHHHHHHcCCeEEEeCCCcccccCcccCCCCCcCCEEEEEhhHcCCcEEEC-CCCeEEEeCC
Confidence 4579999999999999999999999999999999999999888765211 24899999999998 788 5678999999
Q ss_pred CcHHHHHHHHHhcCCcceecCCCC-CCccchhhhhCCCCCCcccccCccccceeEEEEEccCCcE-------ec--c---
Q 036220 137 ATIGEVYYRISEKSKTHGFPAGLC-TSLGVGGHITGGAYGSMMRKYGLGADNVVDARIVDASGRI-------LD--R--- 203 (522)
Q Consensus 137 ~~~~~l~~~l~~~g~~~~~~~g~~-~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vv~~~G~~-------~~--~--- 203 (522)
+++.+|.++|.++|+......|++ -.++|||.++.++.|....+||...++++. ++|+++|++ +. .
T Consensus 115 Vtl~~LeeaLk~~Gl~p~sd~GSS~IGasIGGnIAtNAGG~~vlRgga~te~vL~-~~V~~dGel~lVn~lgi~lG~~~e 193 (564)
T PRK11183 115 TTLYQLEKALKPLGREPHSVIGSSCIGASVIGGICNNSGGALVQRGPAYTEMALY-AQIDEDGKLELVNHLGIDLGETPE 193 (564)
T ss_pred CcHHHHHHHHHHhCCCCCCcccccccCCCCccceEECCcchhheEcchhhhhhhh-hEECCCCcEEEeeccCcccCCCHH
Confidence 999999999999985322212332 245688999999999999999999999999 999999999 32 1
Q ss_pred ------cCCCc----------------------------------chhhhh--hccCCCceEEEEEEEEEEEecCceEEE
Q 036220 204 ------EAMGE----------------------------------DFFWAI--RGGGGASFGVILAWKIKLVPVPATVTV 241 (522)
Q Consensus 204 ------~~~~~----------------------------------dl~~a~--rg~~~g~~Givt~~~lk~~p~p~~~~~ 241 (522)
+..+. |+...+ .|+. |.+||| +++|+++|.|+...+
T Consensus 194 ~il~~l~~~gy~~~~~~~~~~~~~d~~y~~~vr~v~~~~parfnaDl~~LfeasGse-GkLgV~-avrLdtfp~p~~~~v 271 (564)
T PRK11183 194 EILTRLEDGRFDDEDVRHDGRHASDHEYAERVRDVDADTPARFNADPRRLFEASGCA-GKLAVF-AVRLDTFPAEKNTQV 271 (564)
T ss_pred HHHHhhhcCCCCccccCCccccCchhhHHHhhhccCCCCcccccCCHHHHhhccCCC-ceEEEE-EEEeccccCCCcceE
Confidence 11223 777767 7777 999999 999999999999889
Q ss_pred EEEEechHHHHHHHHHHH
Q 036220 242 FTVTKTLEQCATKLLHRW 259 (522)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~ 259 (522)
|.+.++..+.+.++....
T Consensus 272 f~ig~n~~~~~~~~rr~i 289 (564)
T PRK11183 272 FYIGTNDPAVLTEIRRHI 289 (564)
T ss_pred EEEeCCCHHHHHHHHHHH
Confidence 888887666555554433
No 16
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.88 E-value=2.2e-22 Score=201.26 Aligned_cols=163 Identities=21% Similarity=0.246 Sum_probs=134.1
Q ss_pred CCCCceEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCcccCCCCCCeEEEEcCC-CCCeEEeCCCCEEEEcCCC
Q 036220 59 SMPKPEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETPFIIVDLAK-LRSVKVDIDDNSAWVQAGA 137 (522)
Q Consensus 59 ~~~~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~~~~~~~d~~~~givIdl~~-l~~i~~d~~~~~v~v~aG~ 137 (522)
....|.+++.|+|++||++++++|+++++|+.++|+|||.. ..|++.++++|+|++ ++.+.++ +.+++|+||+
T Consensus 32 igg~a~~~v~p~~~edl~~~v~~a~~~~ip~~vlGgGSNll----v~d~g~~gvVI~l~~~~~~i~~~--~~~v~v~AG~ 105 (302)
T PRK14652 32 VGGPADLLVRPADPDALSALLRAVRELGVPLSILGGGANTL----VADAGVRGVVLRLPQDFPGESTD--GGRLVLGAGA 105 (302)
T ss_pred cCCcceEEEEcCCHHHHHHHHHHHHHCCCcEEEEcCCccee----ecCCCEeeEEEEecCCcceEEec--CCEEEEECCC
Confidence 45689999999999999999999999999999999999986 233334589999976 5556543 4699999999
Q ss_pred cHHHHHHHHHhcCCcceecCCCCCCccchhhhhCCCCCCccc-ccCccccceeEEEEEccCCcEecccCCCcchhhhhhc
Q 036220 138 TIGEVYYRISEKSKTHGFPAGLCTSLGVGGHITGGAYGSMMR-KYGLGADNVVDARIVDASGRILDREAMGEDFFWAIRG 216 (522)
Q Consensus 138 ~~~~l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~-~~G~~~d~v~~~~vv~~~G~~~~~~~~~~dl~~a~rg 216 (522)
.+.+|.+++.++|+ .|.+..+||+|.+ ||+..++++ +||.+.|+|+++++|+++| +++.. ..|+.|+||+
T Consensus 106 ~~~~L~~~~~~~GL-----~GlE~l~gIPGTv-GGav~mNaGa~ggei~d~v~~v~vv~~~G-~~~~~--~~e~~f~YR~ 176 (302)
T PRK14652 106 PISRLPARAHAHGL-----VGMEFLAGIPGTL-GGAVAMNAGTKLGEMKDVVTAVELATADG-AGFVP--AAALGYAYRT 176 (302)
T ss_pred cHHHHHHHHHHcCC-----cccccccCCCcch-hHHHHHcCCCCceEhhheEEEEEEECCCC-cEEee--hhhcCcccce
Confidence 99999999999985 3777778888844 777787875 6778899999999999999 44433 3599999998
Q ss_pred cCCCceEEEEEEEEEEEecC
Q 036220 217 GGGASFGVILAWKIKLVPVP 236 (522)
Q Consensus 217 ~~~g~~Givt~~~lk~~p~p 236 (522)
+..+..||||+++||++|.+
T Consensus 177 s~~~~~~II~~a~~~L~~~~ 196 (302)
T PRK14652 177 CRLPPGAVITRVEVRLRPGD 196 (302)
T ss_pred eccCCCeEEEEEEEEEecCC
Confidence 75444489999999999854
No 17
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.88 E-value=2.5e-22 Score=201.38 Aligned_cols=162 Identities=19% Similarity=0.209 Sum_probs=133.5
Q ss_pred CCCCceEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCcccCCCCCCeEEEEcCCCCCeEEeCCCCEEEEcCCCc
Q 036220 59 SMPKPEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETPFIIVDLAKLRSVKVDIDDNSAWVQAGAT 138 (522)
Q Consensus 59 ~~~~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~~~~~~~d~~~~givIdl~~l~~i~~d~~~~~v~v~aG~~ 138 (522)
....|.+++.|+|++||++++++|+++++|+.++|+|||+. ..|++.++++|+|++|++|+++ +.+++|+||+.
T Consensus 33 igg~a~~vv~p~~~edv~~~l~~a~~~~ip~~v~GgGSNll----~~d~g~~GvvI~l~~l~~i~~~--~~~v~v~aG~~ 106 (305)
T PRK12436 33 VGGKADVFVAPTNYDEIQEVIKYANKYNIPVTFLGNGSNVI----IKDGGIRGITVSLIHITGVTVT--GTTIVAQCGAA 106 (305)
T ss_pred cCceEEEEEecCCHHHHHHHHHHHHHcCCCEEEEcCCeEEE----EeCCCeeEEEEEeCCcCcEEEe--CCEEEEEeCCc
Confidence 45679999999999999999999999999999999999987 2333346899999889998876 46899999999
Q ss_pred HHHHHHHHHhcCC-cceecCCCCCCccchhhhhCCCCCCcccccC-ccccceeEEEEEccCCcEecccCCCcchhhhhhc
Q 036220 139 IGEVYYRISEKSK-THGFPAGLCTSLGVGGHITGGAYGSMMRKYG-LGADNVVDARIVDASGRILDREAMGEDFFWAIRG 216 (522)
Q Consensus 139 ~~~l~~~l~~~g~-~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G-~~~d~v~~~~vv~~~G~~~~~~~~~~dl~~a~rg 216 (522)
+.+|.+++.++|+ ++.++.|.+++| ||+.+++++.|| .+.|.+.+++|+++||++++... .|+.|+||.
T Consensus 107 ~~~L~~~~~~~gl~Gle~~~giPGtV-------GGav~~NAGayG~~~~dvl~~v~vv~~~G~v~~~~~--~e~~f~YR~ 177 (305)
T PRK12436 107 IIDVSRIALDHNLTGLEFACGIPGSV-------GGALYMNAGAYGGEISFVLTEAVVMTGDGELRTLTK--EAFEFGYRK 177 (305)
T ss_pred HHHHHHHHHHcCCccchhhcCCccch-------hHHHHhcCccchhehheeeeEEEEEeCCCCEEEEEH--HHhcCcCCC
Confidence 9999999999987 455555555543 566666677788 45688889999999999997543 489999998
Q ss_pred cCCC-ceEEEEEEEEEEEec
Q 036220 217 GGGA-SFGVILAWKIKLVPV 235 (522)
Q Consensus 217 ~~~g-~~Givt~~~lk~~p~ 235 (522)
+... ...||++++||+.+.
T Consensus 178 s~~~~~~~iil~a~~~l~~~ 197 (305)
T PRK12436 178 SVFANNHYIILEARFELEEG 197 (305)
T ss_pred CcCCCCCEEEEEEEEEEcCC
Confidence 8543 357999999999874
No 18
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=99.87 E-value=4.2e-22 Score=198.07 Aligned_cols=163 Identities=20% Similarity=0.159 Sum_probs=139.7
Q ss_pred CCCCceEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCcccCCCCCCeEEEEcCCCCCeEEeCCCCEEEEcCCCc
Q 036220 59 SMPKPEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETPFIIVDLAKLRSVKVDIDDNSAWVQAGAT 138 (522)
Q Consensus 59 ~~~~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~~~~~~~d~~~~givIdl~~l~~i~~d~~~~~v~v~aG~~ 138 (522)
....|.+++.|+|++||++++++|+++++|+.++|+|||+...+. +.+++||++++|+.+.+++ +.+++|+||+.
T Consensus 9 igg~a~~~v~p~s~edl~~~l~~a~~~~~p~~vlGgGSNll~~d~----~~~gvvi~l~~~~~~~~~~-~~~v~v~aG~~ 83 (284)
T TIGR00179 9 IGGNARHIVCPESIEQLVNVLDNAKEEDQPLLILGEGSNLLILDD----GRGGVIINLGKGIDIEDDE-GEYVHVGGGEN 83 (284)
T ss_pred cCceeeEEEEeCCHHHHHHHHHHHHHcCCCEEEEecceEEEEccC----CcCeEEEECCCCceEEEec-CCEEEEEcCCc
Confidence 445899999999999999999999999999999999999885443 2468999999998887766 57999999999
Q ss_pred HHHHHHHHHhcCCcceecCCCCCCccchhhhhCCCCCCcccccCcccc-ceeEEEEEccCCcEecccCCCcchhhhhhcc
Q 036220 139 IGEVYYRISEKSKTHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGAD-NVVDARIVDASGRILDREAMGEDFFWAIRGG 217 (522)
Q Consensus 139 ~~~l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d-~v~~~~vv~~~G~~~~~~~~~~dl~~a~rg~ 217 (522)
|.+|.+++.++|+ .|.+..+||+|. .||+.+++++.||...+ .|++++||++||++++... .|+.|+||.+
T Consensus 84 ~~~l~~~~~~~Gl-----~GlE~l~giPGt-vGGai~mNAGayG~~i~d~l~~v~vv~~~G~~~~~~~--~~~~f~YR~S 155 (284)
T TIGR00179 84 WHKLVKYALKNGL-----SGLEFLAGIPGT-VGGAVIMNAGAYGVEISEVLVYATILLATGKTEWLTN--EQLGFGYRTS 155 (284)
T ss_pred HHHHHHHHHHCCC-----cccccCCCCCch-HHHHHHHhcccchhehhheEEEEEEEeCCCCEEEEEH--HHccccCCcc
Confidence 9999999999975 488888888885 59999999999999875 7899999999999987543 4999999977
Q ss_pred CCCc-e-EEEEEEEEEEEe
Q 036220 218 GGAS-F-GVILAWKIKLVP 234 (522)
Q Consensus 218 ~~g~-~-Givt~~~lk~~p 234 (522)
.... . .||++++|++.+
T Consensus 156 ~f~~~~~~iil~a~~~l~~ 174 (284)
T TIGR00179 156 IFQHKYVGLVLKAEFQLTL 174 (284)
T ss_pred ccCCCCcEEEEEEEEEecc
Confidence 6433 2 699999999843
No 19
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=99.87 E-value=1.3e-21 Score=195.78 Aligned_cols=183 Identities=25% Similarity=0.294 Sum_probs=158.4
Q ss_pred cCCCCCCCceEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCcccCCCCCCeEEEEcCCCCCe-EEeCCCCEEEE
Q 036220 55 YLVPSMPKPEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETPFIIVDLAKLRSV-KVDIDDNSAWV 133 (522)
Q Consensus 55 ~~~~~~~~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~~~~~~~d~~~~givIdl~~l~~i-~~d~~~~~v~v 133 (522)
|+....++.+-|-+|+|++||.++|+.|+++|.++++.|.||+..+..+.+ |.+|+|.+||++ ++|++..+|||
T Consensus 42 fPdr~~c~aanv~yP~teaeL~~lVa~A~~a~~kirvVg~gHSp~~l~ctd-----g~lisl~~lnkVv~~dpe~~tvTV 116 (518)
T KOG4730|consen 42 FPDRSTCKAANVNYPKTEAELVELVAAATEAGKKIRVVGSGHSPSKLVCTD-----GLLISLDKLNKVVEFDPELKTVTV 116 (518)
T ss_pred cCchhhhhhcccCCCCCHHHHHHHHHHHHHcCceEEEecccCCCCcceecc-----ccEEEhhhhccceeeCchhceEEe
Confidence 555555678888999999999999999999999999999999999877654 599999999996 99999999999
Q ss_pred cCCCcHHHHHHHHHhcCCcceec-CCCCCCccchhhhhCCCCCCcccccCccccceeEEEEEccCCcEec-ccCCCcchh
Q 036220 134 QAGATIGEVYYRISEKSKTHGFP-AGLCTSLGVGGHITGGAYGSMMRKYGLGADNVVDARIVDASGRILD-REAMGEDFF 211 (522)
Q Consensus 134 ~aG~~~~~l~~~l~~~g~~~~~~-~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vv~~~G~~~~-~~~~~~dl~ 211 (522)
++|+++.+|.+++.+.|+ .++ .|....++|||++..|+||.....|+.....+....++.++|.++. ++..+||+|
T Consensus 117 ~aGirlrQLie~~~~~Gl--sL~~~~si~e~sVgGii~TGaHGSS~~vH~~v~~i~~v~~~~~~~G~v~~Ls~e~dpe~F 194 (518)
T KOG4730|consen 117 QAGIRLRQLIEELAKLGL--SLPNAPSISEQSVGGIISTGAHGSSLWVHDYVSEIISVSPITPADGFVVVLSEEKDPELF 194 (518)
T ss_pred ccCcCHHHHHHHHHhcCc--cccCCCceecceeeeEEecccCCCccccCcccceeEEEeeeccCCceEEEecccCCHHHH
Confidence 999999999999999875 444 3677778999999999999887767777777777777788998776 666789999
Q ss_pred hhhhccCCCceEEEEEEEEEEEecCceEEEEEEE
Q 036220 212 WAIRGGGGASFGVILAWKIKLVPVPATVTVFTVT 245 (522)
Q Consensus 212 ~a~rg~~~g~~Givt~~~lk~~p~p~~~~~~~~~ 245 (522)
.|.+-|. |-+|||.++||++.|.-+...++.+.
T Consensus 195 ~AAkvSL-G~LGVIs~VTl~~vp~Fk~s~t~~v~ 227 (518)
T KOG4730|consen 195 NAAKVSL-GVLGVISQVTLSVVPAFKRSLTYVVT 227 (518)
T ss_pred hhhhhcc-cceeEEEEEEEEEEecceeeeEEEEe
Confidence 9999999 89999999999999988766665554
No 20
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.87 E-value=1e-21 Score=199.82 Aligned_cols=164 Identities=22% Similarity=0.202 Sum_probs=134.1
Q ss_pred CCCCceEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCcccCCCCCCeEEEEcCCCCCeEEeCCCCEEEEcCCCc
Q 036220 59 SMPKPEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETPFIIVDLAKLRSVKVDIDDNSAWVQAGAT 138 (522)
Q Consensus 59 ~~~~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~~~~~~~d~~~~givIdl~~l~~i~~d~~~~~v~v~aG~~ 138 (522)
....+.+++.|+|++||++++++|+++++|+.++|+|||.. ..|++.+++||+++ ++.+++++++.+|+|+||+.
T Consensus 29 iGg~A~~~~~p~s~edl~~~l~~a~~~~~p~~vlGgGSNlL----v~D~g~~GvVI~l~-~~~i~i~~~~~~v~vgAG~~ 103 (363)
T PRK13903 29 VGGPARRLVTCTSTEELVAAVRELDAAGEPLLVLGGGSNLV----IADDGFDGTVVRVA-TRGVTVDCGGGLVRAEAGAV 103 (363)
T ss_pred cCccceEEEEeCCHHHHHHHHHHHHHCCCCEEEEeCCeeEe----ECCCCccEEEEEeC-CCcEEEeCCCCEEEEEcCCC
Confidence 44578899999999999999999999999999999999987 34444578999997 58888876677999999999
Q ss_pred HHHHHHHHHhcCC-cceecCCCCCCccchhhhhCCCCCCcccccCc-cccceeEEEEEccC-CcEecccCCCcchhhhhh
Q 036220 139 IGEVYYRISEKSK-THGFPAGLCTSLGVGGHITGGAYGSMMRKYGL-GADNVVDARIVDAS-GRILDREAMGEDFFWAIR 215 (522)
Q Consensus 139 ~~~l~~~l~~~g~-~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~-~~d~v~~~~vv~~~-G~~~~~~~~~~dl~~a~r 215 (522)
|.+|.+++.++|+ ++++..|++++||.+..+ |.+.||. +.|.|.++++++.+ |++++.. +.|++|+||
T Consensus 104 ~~~l~~~a~~~GL~GlE~laGIPGTVGGAv~m-------NaGayG~ei~D~l~sV~vvd~~~G~~~~~~--~~el~f~YR 174 (363)
T PRK13903 104 WDDVVARTVEAGLGGLECLSGIPGSAGATPVQ-------NVGAYGQEVSDTITRVRLLDRRTGEVRWVP--AADLGFGYR 174 (363)
T ss_pred HHHHHHHHHHcCCccccccCCCCcchhhHhhc-------CCChhHHHHhhhEeEEEEEECCCCEEEEEE--HHHcceecc
Confidence 9999999999987 566666666666444444 4444554 57999999999965 9998754 459999999
Q ss_pred ccCC--CceEEEEEEEEEEEecC
Q 036220 216 GGGG--ASFGVILAWKIKLVPVP 236 (522)
Q Consensus 216 g~~~--g~~Givt~~~lk~~p~p 236 (522)
++.. ++++|||+++||++|..
T Consensus 175 ~S~f~~~~~~IIl~a~f~L~~~~ 197 (363)
T PRK13903 175 TSVLKHSDRAVVLEVEFQLDPSG 197 (363)
T ss_pred ccccCCCCCEEEEEEEEEEEcCC
Confidence 8732 24789999999999863
No 21
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.87 E-value=8.3e-22 Score=197.60 Aligned_cols=162 Identities=22% Similarity=0.230 Sum_probs=136.5
Q ss_pred CCCceEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCcccCCCCCCeEEEEcCCCCCeEEeCCCCEEEEcCCCcH
Q 036220 60 MPKPEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETPFIIVDLAKLRSVKVDIDDNSAWVQAGATI 139 (522)
Q Consensus 60 ~~~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~~~~~~~d~~~~givIdl~~l~~i~~d~~~~~v~v~aG~~~ 139 (522)
...+.+++.|+|++||+++|++|+++++|+.++|+|||.. ..|++.+++||++++|++|+++. .+++||||+.+
T Consensus 34 GG~A~~~v~p~~~edv~~~v~~a~~~~ip~~vlGgGSNll----~~d~g~~GvvI~l~~l~~i~~~~--~~v~v~aG~~~ 107 (307)
T PRK13906 34 GGNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNII----IREGGIRGIVISLLSLDHIEVSD--DAIIAGSGAAI 107 (307)
T ss_pred CceeEEEEEcCCHHHHHHHHHHHHHcCCCEEEEcCceeEe----ecCCCcceEEEEecCccceEEeC--CEEEEECCCcH
Confidence 3578899999999999999999999999999999999987 23334568999998999998763 58999999999
Q ss_pred HHHHHHHHhcCCcceecCCCCCCccchhhhhCCCCCCcccccC-ccccceeEEEEEccCCcEecccCCCcchhhhhhccC
Q 036220 140 GEVYYRISEKSKTHGFPAGLCTSLGVGGHITGGAYGSMMRKYG-LGADNVVDARIVDASGRILDREAMGEDFFWAIRGGG 218 (522)
Q Consensus 140 ~~l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G-~~~d~v~~~~vv~~~G~~~~~~~~~~dl~~a~rg~~ 218 (522)
.+|.+++.++|+ .|.+..+||+|. .||+..++++.|| .++|+|+++++|+++|++++... .|+.|+||.+.
T Consensus 108 ~~l~~~~~~~Gl-----~GlE~~~gIPGt-VGGav~mNaGayGg~i~D~l~~v~vv~~~G~~~~~~~--~e~~f~YR~S~ 179 (307)
T PRK13906 108 IDVSRVARDYAL-----TGLEFACGIPGS-IGGAVYMNAGAYGGEVKDCIDYALCVNEQGSLIKLTT--KELELDYRNSI 179 (307)
T ss_pred HHHHHHHHHcCC-----ccchhhcCCCcc-HhHHHHhhCCcchhhhhhheeEEEEEeCCCCEEEEEH--HHccCcCCccc
Confidence 999999999975 466666677774 4788888888885 78999999999999999997543 38999999776
Q ss_pred CCc-eEEEEEEEEEEEec
Q 036220 219 GAS-FGVILAWKIKLVPV 235 (522)
Q Consensus 219 ~g~-~Givt~~~lk~~p~ 235 (522)
... --||++++|++.|.
T Consensus 180 ~~~~~~ii~~~~~~l~~~ 197 (307)
T PRK13906 180 IQKEHLVVLEAAFTLAPG 197 (307)
T ss_pred CCCCCEEEEEEEEEECCC
Confidence 432 35999999999863
No 22
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.86 E-value=1e-21 Score=191.85 Aligned_cols=188 Identities=20% Similarity=0.289 Sum_probs=171.7
Q ss_pred ccccccCCCCCCCceEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCcccCCCCCCeEEEEcCCCCCe-EEeCCC
Q 036220 50 AQNLRYLVPSMPKPEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETPFIIVDLAKLRSV-KVDIDD 128 (522)
Q Consensus 50 ~~n~r~~~~~~~~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~~~~~~~d~~~~givIdl~~l~~i-~~d~~~ 128 (522)
.+|.-|..........|..|+|+++|++|+++|+++++.|+++||-+...|.|.+. .+.|||+|.+||+| ++|+-.
T Consensus 77 ~~n~dwm~kyrG~sklvL~Pkst~eVS~ILkYCn~~kLAVVPQGGNTgLVGgSVPv---fDEiVlsl~~mNKi~sfDevs 153 (511)
T KOG1232|consen 77 NFNTDWMKKYRGQSKLVLKPKSTEEVSAILKYCNDRKLAVVPQGGNTGLVGGSVPV---FDEIVLSLGLMNKILSFDEVS 153 (511)
T ss_pred hhhhHHHHhccCCceEEecCCCHHHHHHHHHhhccccEEEecCCCCcccccCcccc---hHHHhhhhhhhcccccccccc
Confidence 46778888888899999999999999999999999999999999999988888765 56899999999998 999999
Q ss_pred CEEEEcCCCcHHHHHHHHHhcCCcceecCCCCCCccchhhhhCCCCCCcccccCccccceeEEEEEccCCcEec------
Q 036220 129 NSAWVQAGATIGEVYYRISEKSKTHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADNVVDARIVDASGRILD------ 202 (522)
Q Consensus 129 ~~v~v~aG~~~~~l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vv~~~G~~~~------ 202 (522)
+++++.+|+.+.++..+|+++|+.+++..|.-+++-|||.++..+.|..--+||...-+|+++|+|+|+|+++.
T Consensus 154 Gil~cdaG~ILen~d~~l~e~g~m~PlDLgAKgsCqiGG~vsTnAGGlrllRYGsLHgsvLGle~Vlp~G~vl~~~~slR 233 (511)
T KOG1232|consen 154 GILKCDAGVILENADNFLAEKGYMFPLDLGAKGSCQIGGNVSTNAGGLRLLRYGSLHGSVLGLEVVLPNGTVLDLLSSLR 233 (511)
T ss_pred ceEEeccceEehhhHHHHHhcCceeeecCCCcccceecceeeccCCceEEEEecccccceeeeEEEcCCCchhhhhhhhc
Confidence 99999999999999999999998777778888888999999999999999999999999999999999999985
Q ss_pred ccCCCcchhhhhhccCCCceEEEEEEEEEEEecCceEEE
Q 036220 203 REAMGEDFFWAIRGGGGASFGVILAWKIKLVPVPATVTV 241 (522)
Q Consensus 203 ~~~~~~dl~~a~rg~~~g~~Givt~~~lk~~p~p~~~~~ 241 (522)
...++.|+-..+.|+. |++||||++++-+.|.|+.+..
T Consensus 234 KDNTgydlkhLFIGSE-GtlGVvT~vSil~~~kpksvn~ 271 (511)
T KOG1232|consen 234 KDNTGYDLKHLFIGSE-GTLGVVTKVSILAPPKPKSVNV 271 (511)
T ss_pred ccCccccchhheecCC-ceeeEEeeEEEeecCCCcceeE
Confidence 3445789999999888 9999999999999999986544
No 23
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=99.85 E-value=2e-20 Score=183.04 Aligned_cols=193 Identities=21% Similarity=0.240 Sum_probs=160.8
Q ss_pred cCCCCCCCceEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCC-CcccCCCCCCeEEEEcCCCCCe-EEeCCCCEEE
Q 036220 55 YLVPSMPKPEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEG-LSYVSETETPFIIVDLAKLRSV-KVDIDDNSAW 132 (522)
Q Consensus 55 ~~~~~~~~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~~-~~~~~d~~~~givIdl~~l~~i-~~d~~~~~v~ 132 (522)
|.....+.|+.||.|+..+||.++|+.|.+|++-+.+.|||+|.++ ..++.+...-.+.+|++.||+| -+|.++.+++
T Consensus 153 regkf~RiPDiVvWP~chdevVkiv~lA~khN~~iiPiGGGTSVs~al~cP~~E~R~iislDtsqmnriLWidreNLT~~ 232 (613)
T KOG1233|consen 153 REGKFPRIPDIVVWPKCHDEVVKIVELAMKHNCAIIPIGGGTSVSNALDCPETEKRAIISLDTSQMNRILWIDRENLTCR 232 (613)
T ss_pred hcCccCCCCceEecccchHHHHHHHHHHhhcCeEEEEeCCcccccccccCCcccceeEEEecHHhhhheeEeccccceEE
Confidence 3445567999999999999999999999999999999999999774 4444432222345788899998 8999999999
Q ss_pred EcCCCcHHHHHHHHHhcCCcceecCCCCCCccchhhhhCCCCCCcccccCccccceeEEEEEccCCcEec-----ccCCC
Q 036220 133 VQAGATIGEVYYRISEKSKTHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADNVVDARIVDASGRILD-----REAMG 207 (522)
Q Consensus 133 v~aG~~~~~l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vv~~~G~~~~-----~~~~~ 207 (522)
+++|+.-.+|.+.|.+.|+.-...+.+....++||+++..+.||.-..||.+-|-|+.+++|++.|.+.+ .-..+
T Consensus 233 ~eaGIvGQ~LERqL~~~G~t~GHEPDS~EFSTlGGWVsTRASGMKKN~YGNIEDLVVh~~mVtP~Giiek~Cq~PRmS~G 312 (613)
T KOG1233|consen 233 AEAGIVGQSLERQLNKKGFTCGHEPDSIEFSTLGGWVSTRASGMKKNKYGNIEDLVVHLNMVTPKGIIEKQCQVPRMSSG 312 (613)
T ss_pred EecCcchHHHHHHHhhcCcccCCCCCceeeecccceeeeccccccccccCChhHheEEEEeecCcchhhhhhcCCcccCC
Confidence 9999999999999999875322233333446899999999999999999999999999999999999875 23458
Q ss_pred cchhhhhhccCCCceEEEEEEEEEEEecCceEEEEEEEech
Q 036220 208 EDFFWAIRGGGGASFGVILAWKIKLVPVPATVTVFTVTKTL 248 (522)
Q Consensus 208 ~dl~~a~rg~~~g~~Givt~~~lk~~p~p~~~~~~~~~~~~ 248 (522)
||+-.-+.|+. |++||||++++|++|.|+....-.+.|+.
T Consensus 313 PDihh~IlGSE-GTLGVitEvtiKirPiPe~~ryGS~aFPN 352 (613)
T KOG1233|consen 313 PDIHHIILGSE-GTLGVITEVTIKIRPIPEVKRYGSFAFPN 352 (613)
T ss_pred CCcceEEeccC-cceeEEEEEEEEEeechhhhhcCccccCc
Confidence 99999999888 99999999999999999876665666654
No 24
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.83 E-value=1.2e-19 Score=181.29 Aligned_cols=166 Identities=19% Similarity=0.218 Sum_probs=132.7
Q ss_pred CCCCceEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCcccCCCCCCeEEEEcCCCC-CeEEeCCCCEEEEcCCC
Q 036220 59 SMPKPEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETPFIIVDLAKLR-SVKVDIDDNSAWVQAGA 137 (522)
Q Consensus 59 ~~~~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~~~~~~~d~~~~givIdl~~l~-~i~~d~~~~~v~v~aG~ 137 (522)
......+++.|+|++||++++++|+++++|+.++|+|||+...+ ++.+|+||++++++ ++..+.+..+++|+||+
T Consensus 17 iGg~a~~~v~p~~~~dl~~~l~~~~~~~ip~~vlG~GSNlL~~d----~g~~GvVI~l~~~~~~i~~~~~~~~v~v~AG~ 92 (295)
T PRK14649 17 IGGPARYFVEPTTPDEAIAAAAWAEQRQLPLFWLGGGSNLLVRD----EGFDGLVARYRGQRWELHEHGDTAEVWVEAGA 92 (295)
T ss_pred eCceeeEEEEcCCHHHHHHHHHHHHHCCCCEEEEecceeEEEeC----CCcCeEEEEecCCCcEEEEeCCcEEEEEEcCC
Confidence 34577889999999999999999999999999999999987433 33478999998754 66666555589999999
Q ss_pred cHHHHHHHHHhcCCcceecCCCCCCccchhhhhCCCCCCcccccCccccceeEEEEEccCCcEecccCCCcchhhhhhcc
Q 036220 138 TIGEVYYRISEKSKTHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADNVVDARIVDASGRILDREAMGEDFFWAIRGG 217 (522)
Q Consensus 138 ~~~~l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vv~~~G~~~~~~~~~~dl~~a~rg~ 217 (522)
+|.+|.+++.++|+ .|.+..+||+|.+.|..+++.....+.++|.|.++++++.+|++++... .||+|+||.+
T Consensus 93 ~~~~l~~~~~~~GL-----~GlE~l~GIPGTvGGa~~mNaGayg~ei~d~l~~V~~~~~~g~~~~~~~--~el~f~YR~S 165 (295)
T PRK14649 93 PMAGTARRLAAQGW-----AGLEWAEGLPGTIGGAIYGNAGCYGGDTATVLIRAWLLLNGSECVEWSV--HDFAYGYRTS 165 (295)
T ss_pred cHHHHHHHHHHcCC-----ccccccCCCCcchhHHHHhhccccceEhheeEEEEEEEeCCCCEEEEeH--HHcCccccee
Confidence 99999999999985 5667788888855333455444444567899999999999999987543 3999999987
Q ss_pred CCCce---------EEEEEEEEEEEec
Q 036220 218 GGASF---------GVILAWKIKLVPV 235 (522)
Q Consensus 218 ~~g~~---------Givt~~~lk~~p~ 235 (522)
..... -||++++|++.+.
T Consensus 166 ~~~~~~~~~~~~~~~ii~~~~~~l~~~ 192 (295)
T PRK14649 166 VLKQLRADGITWRPPLVLAARFRLHRD 192 (295)
T ss_pred ecccccccccccCCeEEEEEEEEECCC
Confidence 54321 3899999999875
No 25
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.78 E-value=1.7e-18 Score=172.32 Aligned_cols=162 Identities=18% Similarity=0.261 Sum_probs=133.3
Q ss_pred CCCCceEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCcccCCCCCCeEEEEcCCCCCeEEeCCCCEEEEcCCCc
Q 036220 59 SMPKPEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETPFIIVDLAKLRSVKVDIDDNSAWVQAGAT 138 (522)
Q Consensus 59 ~~~~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~~~~~~~d~~~~givIdl~~l~~i~~d~~~~~v~v~aG~~ 138 (522)
......+++.|+|++|+++++++|++ ++|+.++|+|+|.... |++.+++||.+++|+.|+++ +..++|+||++
T Consensus 30 iGG~A~~~v~p~s~eel~~~~~~~~~-~~p~~vlG~GSNlLv~----d~g~~gvVI~l~~~~~i~i~--~~~v~v~AG~~ 102 (297)
T PRK14653 30 IGGPVPLFAIPNSTNGFIETINLLKE-GIEVKILGNGTNVLPK----DEPMDFVVVSTERLDDIFVD--NDKIICESGLS 102 (297)
T ss_pred eCcEEEEEEecCCHHHHHHHHHHHhc-CCCEEEEcCCeeEEEe----cCCccEEEEEeCCcCceEEe--CCEEEEeCCCc
Confidence 34466789999999999999999999 9999999999998843 33346899999789999886 35899999999
Q ss_pred HHHHHHHHHhcCCcceecCCCCCCccchhhhhCCCCCCcccccCc-cccceeEEEEEccCCcEecccCCCcchhhhhhcc
Q 036220 139 IGEVYYRISEKSKTHGFPAGLCTSLGVGGHITGGAYGSMMRKYGL-GADNVVDARIVDASGRILDREAMGEDFFWAIRGG 217 (522)
Q Consensus 139 ~~~l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~-~~d~v~~~~vv~~~G~~~~~~~~~~dl~~a~rg~ 217 (522)
+.+|.+++.++|+ .|.+..+||+|.+ ||+.-||++.||. +.|.|.++++++ +|++++... .|+-|.||.+
T Consensus 103 l~~L~~~~~~~GL-----~GlE~l~gIPGTV-GGAv~mNAGayG~ei~d~l~~V~~~d-~g~v~~~~~--~e~~f~YR~S 173 (297)
T PRK14653 103 LKKLCLVAAKNGL-----SGFENAYGIPGSV-GGAVYMNAGAYGWETAENIVEVVAYD-GKKIIRLGK--NEIKFSYRNS 173 (297)
T ss_pred HHHHHHHHHHCCC-----cchhhhcCCchhH-HHHHHHhCccCchhhheeEEEEEEEC-CCEEEEEch--hhccccCccc
Confidence 9999999999986 5556666666664 7778888888998 789999999999 787776543 3999999976
Q ss_pred CCCc--eEEEEEEEEEEEecC
Q 036220 218 GGAS--FGVILAWKIKLVPVP 236 (522)
Q Consensus 218 ~~g~--~Givt~~~lk~~p~p 236 (522)
..+. -.|||+++||+.|..
T Consensus 174 ~~~~~~~~iI~~a~f~L~~~~ 194 (297)
T PRK14653 174 IFKEEKDLIILRVTFKLKKGN 194 (297)
T ss_pred cCCCCCcEEEEEEEEEEecCC
Confidence 5432 239999999998753
No 26
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.76 E-value=9.6e-18 Score=163.56 Aligned_cols=170 Identities=23% Similarity=0.265 Sum_probs=143.0
Q ss_pred ccCC-CCCCCceEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCcccCCCCCCeEEEEcCCCCCeEEeCCCCEEE
Q 036220 54 RYLV-PSMPKPEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETPFIIVDLAKLRSVKVDIDDNSAW 132 (522)
Q Consensus 54 r~~~-~~~~~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~~~~~~~d~~~~givIdl~~l~~i~~d~~~~~v~ 132 (522)
||+. ........++.|++.+|+.++++.+.+.++|+.+.|+|+|.+ ..|++.++++|.+.+++.++++.+...++
T Consensus 11 ~~ttfriGg~A~~~~~~~~~e~l~~~~~~~~~~~~p~~ilG~GSNlL----v~d~g~~gvvi~~~~~~~~~~~~~~~~i~ 86 (291)
T COG0812 11 RYTTFRIGGPAEVLVEPRDIEELKAALKYAKAEDLPVLILGGGSNLL----VRDGGIGGVVIKLGKLNFIEIEGDDGLIE 86 (291)
T ss_pred cceeEecCcceeEEEecCCHHHHHHHHHhhhhcCCCEEEEecCceEE----EecCCCceEEEEcccccceeeeccCCeEE
Confidence 4554 345677899999999999999999999999999999999976 34445679999999999888877777999
Q ss_pred EcCCCcHHHHHHHHHhcCCcceecCCCCCCccchhhhhCCCCCCcccccCcc-ccceeEEEEEccCCcEecccCCCcchh
Q 036220 133 VQAGATIGEVYYRISEKSKTHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLG-ADNVVDARIVDASGRILDREAMGEDFF 211 (522)
Q Consensus 133 v~aG~~~~~l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~-~d~v~~~~vv~~~G~~~~~~~~~~dl~ 211 (522)
|++|+.|.+|.+++.++|+ .|.+..+||+|.+ ||+.-||.+.||.- .|.+.++++++.+|++++... .||-
T Consensus 87 a~aG~~~~~l~~~~~~~gl-----~GlE~l~gIPGsv-Ggav~mNaGAyG~Ei~d~~~~v~~ld~~G~~~~l~~--~el~ 158 (291)
T COG0812 87 AGAGAPWHDLVRFALENGL-----SGLEFLAGIPGSV-GGAVIMNAGAYGVEISDVLVSVEVLDRDGEVRWLSA--EELG 158 (291)
T ss_pred EccCCcHHHHHHHHHHcCC-----cchhhhcCCCccc-chhhhccCcccccchheeEEEEEEEcCCCCEEEEEH--HHhC
Confidence 9999999999999999986 5556666666666 77888888888875 699999999999999998543 4999
Q ss_pred hhhhccCCCce-EEEEEEEEEEEec
Q 036220 212 WAIRGGGGASF-GVILAWKIKLVPV 235 (522)
Q Consensus 212 ~a~rg~~~g~~-Givt~~~lk~~p~ 235 (522)
|+||-+....- .||++++||+.|-
T Consensus 159 f~YR~S~f~~~~~vvl~v~f~L~~~ 183 (291)
T COG0812 159 FGYRTSPFKKEYLVVLSVEFKLTKG 183 (291)
T ss_pred cccccCcCCCCCEEEEEEEEEeCCC
Confidence 99997765444 8999999999875
No 27
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.74 E-value=1.7e-17 Score=164.47 Aligned_cols=164 Identities=15% Similarity=0.182 Sum_probs=135.0
Q ss_pred CCCCceEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCcccCCCC-CCeEEEEcCCCCCeEEeCCCCEEEEcCCC
Q 036220 59 SMPKPEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETE-TPFIIVDLAKLRSVKVDIDDNSAWVQAGA 137 (522)
Q Consensus 59 ~~~~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~~~~~~~d~~-~~givIdl~~l~~i~~d~~~~~v~v~aG~ 137 (522)
......+++.|+|.+|+++++++++++++|+.+.|+|+|.. ..|++ .+++||.+.+|+.++++. ..++|+||+
T Consensus 29 iGG~A~~~~~p~~~~eL~~~l~~~~~~~~p~~vlG~GSNlL----v~D~g~~~g~vi~~~~~~~i~~~~--~~v~a~AG~ 102 (302)
T PRK14650 29 IGGISKLFLTPKTIKDAEHIFKAAIEEKIKIFILGGGSNIL----INDEEEIDFPIIYTGHLNKIEIHD--NQIVAECGT 102 (302)
T ss_pred eCcEEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeceeEEE----EECCCccceEEEEECCcCcEEEeC--CEEEEEeCC
Confidence 33466778889999999999999999999999999999987 34444 568999887799998763 479999999
Q ss_pred cHHHHHHHHHhcCCcceecCCCCCCccchhhhhCCCCCCcccccCc-cccceeEEEEEccCCcEecccCCCcchhhhhhc
Q 036220 138 TIGEVYYRISEKSKTHGFPAGLCTSLGVGGHITGGAYGSMMRKYGL-GADNVVDARIVDASGRILDREAMGEDFFWAIRG 216 (522)
Q Consensus 138 ~~~~l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~-~~d~v~~~~vv~~~G~~~~~~~~~~dl~~a~rg 216 (522)
.|.+|.+++.++|+ .|.+..+||+|.+ ||+.-||.+.||. +.|.|.++++++.+|++++... .|+.|+||.
T Consensus 103 ~~~~l~~~~~~~gl-----~GlE~l~gIPGTV-GGAv~mNAGayG~ei~d~l~sV~~~d~~g~~~~~~~--~e~~f~YR~ 174 (302)
T PRK14650 103 NFEDLCKFALQNEL-----SGLEFIYGLPGTL-GGAIWMNARCFGNEISEILDKITFIDEKGKTICKKF--KKEEFKYKI 174 (302)
T ss_pred cHHHHHHHHHHcCC-----chhhhhcCCCcch-hHHHHhhCCccccchheeEEEEEEEECCCCEEEEEH--HHcCccccc
Confidence 99999999999986 5666666677766 7777888888886 5699999999999999887543 499999997
Q ss_pred cCCCc-eEEEEEEEEEEEecC
Q 036220 217 GGGAS-FGVILAWKIKLVPVP 236 (522)
Q Consensus 217 ~~~g~-~Givt~~~lk~~p~p 236 (522)
+.... -.||++++|++.|.+
T Consensus 175 S~f~~~~~iIl~a~f~L~~~~ 195 (302)
T PRK14650 175 SPFQNKNTFILKATLNLKKGN 195 (302)
T ss_pred ccCCCCCEEEEEEEEEEcCCC
Confidence 76432 259999999998754
No 28
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.72 E-value=2.9e-17 Score=165.27 Aligned_cols=163 Identities=17% Similarity=0.144 Sum_probs=133.1
Q ss_pred CCCCceEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCcccCCCCCCeEEEEcCCCCCeEEe-CCC--CEEEEcC
Q 036220 59 SMPKPEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETPFIIVDLAKLRSVKVD-IDD--NSAWVQA 135 (522)
Q Consensus 59 ~~~~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~~~~~~~d~~~~givIdl~~l~~i~~d-~~~--~~v~v~a 135 (522)
......+++.|+|++|+++++++|+++++|+.+.|+|+|..- .| +.+|+||.+ +|+.++++ .++ .+++|+|
T Consensus 17 iGG~A~~~~~p~~~~el~~~~~~~~~~~~p~~vlG~GSNlLv----~D-~~~g~vI~~-~~~~~~~~~~~~~~~~v~a~A 90 (334)
T PRK00046 17 IDARARHLVEAESEEQLLEALADARAAGLPVLVLGGGSNVLF----TE-DFDGTVLLN-RIKGIEVLSEDDDAWYLHVGA 90 (334)
T ss_pred cCcEEeEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceEEEEE----CC-CCCEEEEEe-cCCceEEEecCCCeEEEEEEc
Confidence 344667899999999999999999999999999999999873 33 257899988 49998873 222 2799999
Q ss_pred CCcHHHHHHHHHhcCCcceecCCCCCCccchhhhhCCCCCCcccccCc-cccceeEEEEEccC-CcEecccCCCcchhhh
Q 036220 136 GATIGEVYYRISEKSKTHGFPAGLCTSLGVGGHITGGAYGSMMRKYGL-GADNVVDARIVDAS-GRILDREAMGEDFFWA 213 (522)
Q Consensus 136 G~~~~~l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~-~~d~v~~~~vv~~~-G~~~~~~~~~~dl~~a 213 (522)
|+.|.+|.+++.++|+ .|.+..+||+|.+ ||+.-||.+.||. +.|.|.++++++.+ |++++... .|+.|+
T Consensus 91 G~~~~~l~~~~~~~gl-----~GlE~l~gIPGTV-GGAv~mNaGayG~ei~d~l~~V~v~d~~~g~~~~~~~--~e~~f~ 162 (334)
T PRK00046 91 GENWHDLVLWTLQQGM-----PGLENLALIPGTV-GAAPIQNIGAYGVELKDVCDYVEALDLATGEFVRLSA--AECRFG 162 (334)
T ss_pred CCcHHHHHHHHHHcCc-----hhhHHhcCCCcch-hHHHHhcCCcCcccHheeEEEEEEEECCCCcEEEEEH--HHcCcc
Confidence 9999999999999986 5666666777776 7777888888886 46999999999987 99887543 499999
Q ss_pred hhccCCCc----eEEEEEEEEEEEec
Q 036220 214 IRGGGGAS----FGVILAWKIKLVPV 235 (522)
Q Consensus 214 ~rg~~~g~----~Givt~~~lk~~p~ 235 (522)
||.+.... --||++++|++.|-
T Consensus 163 YR~S~f~~~~~~~~iVl~a~f~L~~~ 188 (334)
T PRK00046 163 YRDSIFKHEYPDRYAITAVGFRLPKQ 188 (334)
T ss_pred cccccCCCCCcCCEEEEEEEEEecCC
Confidence 99875432 24999999999884
No 29
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.69 E-value=1.8e-16 Score=159.33 Aligned_cols=165 Identities=21% Similarity=0.261 Sum_probs=132.1
Q ss_pred CCCceEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCcccCCCCCCeEEEEcCCCCCeEEe---CCCCEEEEcCC
Q 036220 60 MPKPEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETPFIIVDLAKLRSVKVD---IDDNSAWVQAG 136 (522)
Q Consensus 60 ~~~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~~~~~~~d~~~~givIdl~~l~~i~~d---~~~~~v~v~aG 136 (522)
.....+++.|+|.+|+++++++++++++|+.+.|+|+|.. ..|++.+|+||.+.+|+.+++. .+...++|++|
T Consensus 27 GG~A~~~~~p~s~~el~~~l~~~~~~~~p~~iLG~GSNlL----~~D~g~~G~VI~l~~~~~i~i~~~~~~~~~v~agAG 102 (354)
T PRK14648 27 GGAAQFWAEPRSCTQLRALIEEAQRARIPLSLIGGGSNVL----IADEGVPGLMLSLRRFRSLHTQTQRDGSVLVHAGAG 102 (354)
T ss_pred CcEEEEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceeEEE----EeCCCccEEEEEeCCcCceEEeeccCCcEEEEEEeC
Confidence 3466789999999999999999999999999999999987 3444467999999779988752 22247999999
Q ss_pred CcHHHHHHHHHhcCCcceecCCCCCCccchhhhhCCCCCCcccccCcc-ccceeEEEEE--------------------c
Q 036220 137 ATIGEVYYRISEKSKTHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLG-ADNVVDARIV--------------------D 195 (522)
Q Consensus 137 ~~~~~l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~-~d~v~~~~vv--------------------~ 195 (522)
+.|.+|.+++.++|+ .|.+..+||+|.+ ||+.-||.+.||.. .|.|.+++++ +
T Consensus 103 ~~~~~Lv~~~~~~gl-----~GlE~laGIPGTV-GGAv~mNAGAyG~ei~d~l~~V~v~d~~~~~~~~~~~~~~~~~~~~ 176 (354)
T PRK14648 103 LPVAALLAFCAHHAL-----RGLETFAGLPGSV-GGAAYMNARCYGRAIADCFHSARTLVLHPVRSRAKELPEVRKNAQD 176 (354)
T ss_pred CcHHHHHHHHHHcCC-----cchhhhcCCCcch-hhHhhhcCCccceEhhheEEEEEEEeccCccccccccccccccccc
Confidence 999999999999986 5666667777776 77888888888865 6999999999 4
Q ss_pred cCCcE-------------ecccCCCcchhhhhhccCCCc---------eEEEEEEEEEEEecC
Q 036220 196 ASGRI-------------LDREAMGEDFFWAIRGGGGAS---------FGVILAWKIKLVPVP 236 (522)
Q Consensus 196 ~~G~~-------------~~~~~~~~dl~~a~rg~~~g~---------~Givt~~~lk~~p~p 236 (522)
.+|++ ++.. +.|+.|+||.+.... --||++++|++.|..
T Consensus 177 ~~g~~~~~~~~~~~~~~~~~~~--~~e~~f~YR~S~f~~~~~~~~~~~~~iIl~v~f~L~~~~ 237 (354)
T PRK14648 177 KRGECLGLDGGPFTCSSFQTVF--ARAGDWGYKRSPFQSPHGVELHAGRRLILSLCVRLTPGN 237 (354)
T ss_pred CCCceecccccccccccceEec--HHHcCccCCcccCCCCccccccCCCEEEEEEEEEEcCCC
Confidence 56776 2222 358999999876432 239999999998753
No 30
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=99.64 E-value=9.9e-17 Score=114.36 Aligned_cols=47 Identities=53% Similarity=0.925 Sum_probs=35.0
Q ss_pred eeccccCcccCCCCCCCcccccchhhhhhccccHHHHHHhhhhcCCCCccccCCCCC
Q 036220 455 AYVNYRDLDLGMNKNGSSFIKSSVWGYKYFKDNFNRLVKVKTKVDPDNFFRHEQSIP 511 (522)
Q Consensus 455 ~Y~Ny~d~~~~~~~~~~~~~~~~~~~~~yyg~n~~RL~~IK~kyDP~~vF~~~q~i~ 511 (522)
+|+||+|.+++ ..+|.+.|||+||+||++||++|||+|||+++|+||
T Consensus 1 aY~Ny~d~~~~----------~~~~~~~yyg~n~~rL~~iK~~yDP~n~F~~~q~I~ 47 (47)
T PF08031_consen 1 AYVNYPDPDLP----------GDDWQEAYYGENYDRLRAIKRKYDPDNVFRFPQSIP 47 (47)
T ss_dssp --TTS--GGGG----------SSHHHHHHHGGGHHHHHHHHHHH-TT-TS-STTS--
T ss_pred CcccCCCCccc----------hhHHHHHHhchhHHHHHHHHHHhCccceeCCCCCcC
Confidence 59999999865 137999999999999999999999999999999996
No 31
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.59 E-value=8.4e-15 Score=143.36 Aligned_cols=157 Identities=22% Similarity=0.289 Sum_probs=121.7
Q ss_pred cCCCCCCCceEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCcccCCCCCCeEEEEcCC-CCCeEEeCCCCEEEE
Q 036220 55 YLVPSMPKPEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETPFIIVDLAK-LRSVKVDIDDNSAWV 133 (522)
Q Consensus 55 ~~~~~~~~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~~~~~~~d~~~~givIdl~~-l~~i~~d~~~~~v~v 133 (522)
++......|+-++.|+|++|+++++ ++|+.+.|+|+|.+ ..|++.+++||.+.+ ++.++++. +|
T Consensus 12 ~tt~riGG~A~~~~p~~~~~l~~~~------~~p~~vlG~GSNlL----~~D~g~~g~vI~l~~~~~~~~~~~-----~a 76 (273)
T PRK14651 12 YTTLGVGGPAELWTVETHEQLAEAT------EAPYRVLGGGSNLL----VSDAGVPERVIRLGGEFAEWDLDG-----WV 76 (273)
T ss_pred ccEeecCceEEEEecCCHHHHHHHH------CCCeEEEeceeEEE----EcCCCcceEEEEECCcceeEeECC-----EE
Confidence 4443334454444499999999988 48999999999987 344445789998865 66666532 69
Q ss_pred cCCCcHHHHHHHHHhcCCcceecCCCCCCccchhhhhCCCCCCcccccCc-cccceeEEEEEccCCcEecccCCCcchhh
Q 036220 134 QAGATIGEVYYRISEKSKTHGFPAGLCTSLGVGGHITGGAYGSMMRKYGL-GADNVVDARIVDASGRILDREAMGEDFFW 212 (522)
Q Consensus 134 ~aG~~~~~l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~-~~d~v~~~~vv~~~G~~~~~~~~~~dl~~ 212 (522)
+||+.|.+|.+++.++|+ .|.+..+||+|.+ ||+.-||.+.||. +.|.|.++++++ +|++++... .|+.|
T Consensus 77 ~AG~~~~~l~~~~~~~gl-----~GlE~l~gIPGTV-GGAv~mNaGayG~ei~d~l~~V~~~~-~g~~~~~~~--~e~~f 147 (273)
T PRK14651 77 GGGVPLPGLVRRAARLGL-----SGLEGLVGIPAQV-GGAVKMNAGTRFGEMADALHTVEIVH-DGGFHQYSP--DELGF 147 (273)
T ss_pred ECCCcHHHHHHHHHHCCC-----cchhhhcCCCcch-hhHHHhhCCccccChheeEEEEEEEE-CCCEEEEEH--HHccc
Confidence 999999999999999986 4666666677766 7777888888886 569999999997 899887543 49999
Q ss_pred hhhccCCCceEEEEEEEEEEEec
Q 036220 213 AIRGGGGASFGVILAWKIKLVPV 235 (522)
Q Consensus 213 a~rg~~~g~~Givt~~~lk~~p~ 235 (522)
+||.+....--||++++|++.|.
T Consensus 148 ~YR~S~~~~~~iIl~a~f~l~~~ 170 (273)
T PRK14651 148 GYRHSGLPPGHVVTRVRLKLRPS 170 (273)
T ss_pred cccccCCCCCEEEEEEEEEECCC
Confidence 99977644335999999999874
No 32
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only]
Probab=99.45 E-value=8.5e-14 Score=137.14 Aligned_cols=126 Identities=25% Similarity=0.336 Sum_probs=110.1
Q ss_pred EEEcCCCCCe-EEeCCCCEEEEcCCCcHHHHHHHHHhcCCcceecCCCCCCccchhhhhCCCCCCcccccCccccceeEE
Q 036220 113 IVDLAKLRSV-KVDIDDNSAWVQAGATIGEVYYRISEKSKTHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADNVVDA 191 (522)
Q Consensus 113 vIdl~~l~~i-~~d~~~~~v~v~aG~~~~~l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~ 191 (522)
-|++..|.+| ++|.+..+|+|+|+|+++++.++|.+.|+.|++.+ .-.+.++||.+.|-|+-..|.+||+..|.+.+.
T Consensus 105 ~v~id~l~dILeld~ekmtvrvEP~Vtmgqis~~lip~g~tLaV~~-EldDlTvGGLinG~Gies~ShkyGlfq~~~~aY 183 (543)
T KOG1262|consen 105 QVPIDELHDILELDEEKMTVRVEPLVTMGQISKFLIPKGYTLAVLP-ELDDLTVGGLINGVGIESSSHKYGLFQHICTAY 183 (543)
T ss_pred cCCHHHHhHHHhcchhcceEEecCCccHHHHHHHhccCCceeeeec-ccccceecceeeecccccccchhhhHHhhhhee
Confidence 3555555555 88999999999999999999999999988776554 445688999999999999999999999999999
Q ss_pred EEEccCCcEec--ccCCCcchhhhhhccCCCceEEEEEEEEEEEecCceEE
Q 036220 192 RIVDASGRILD--REAMGEDFFWAIRGGGGASFGVILAWKIKLVPVPATVT 240 (522)
Q Consensus 192 ~vv~~~G~~~~--~~~~~~dl~~a~rg~~~g~~Givt~~~lk~~p~p~~~~ 240 (522)
|||++||++++ ..++++|||+|+-.+. |++|....+++|+.|..+.+.
T Consensus 184 EvVladGelv~~t~dne~sdLfyaiPWSq-GTlgfLVaatiriIkvK~Yvk 233 (543)
T KOG1262|consen 184 EVVLADGELVRVTPDNEHSDLFYAIPWSQ-GTLGFLVAATIRIIKVKKYVK 233 (543)
T ss_pred EEEecCCeEEEecCCcccCceEEEccccc-CchheeeeeEEEEEeccceEE
Confidence 99999999997 3447899999999999 999999999999999887653
No 33
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.32 E-value=5.9e-12 Score=122.21 Aligned_cols=143 Identities=16% Similarity=0.160 Sum_probs=109.4
Q ss_pred CCceEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCcccCCCCCCeEEEEcCCCCCeEEeCCCCEEEEcCCCcHH
Q 036220 61 PKPEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETPFIIVDLAKLRSVKVDIDDNSAWVQAGATIG 140 (522)
Q Consensus 61 ~~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~~~~~~~d~~~~givIdl~~l~~i~~d~~~~~v~v~aG~~~~ 140 (522)
....+++.|.+.+ + ++|+.+.|+|+|.+ ..|++.++++ -+++|+.++++. .+++|+||+.|.
T Consensus 17 G~A~~~~~~~~~~-l----------~~p~~vlG~GSNlL----v~D~g~~~vv-~~~~~~~~~~~~--~~v~~~AG~~l~ 78 (257)
T PRK13904 17 PPLEVLVLEEIDD-F----------SQDGQIIGGANNLL----ISPNPKNLAI-LGKNFDYIKIDG--ECLEIGGATKSG 78 (257)
T ss_pred ceEEEEEEechhh-h----------CCCeEEEeceeEEE----EecCCccEEE-EccCcCeEEEeC--CEEEEEcCCcHH
Confidence 3455677788777 5 79999999999987 3343344554 346788888754 479999999999
Q ss_pred HHHHHHHhcCCcceecCCCCCCccchhhhhCCCCCCcccccCc-cccceeEEEEEccCCcEecccCCCcchhhhhhccCC
Q 036220 141 EVYYRISEKSKTHGFPAGLCTSLGVGGHITGGAYGSMMRKYGL-GADNVVDARIVDASGRILDREAMGEDFFWAIRGGGG 219 (522)
Q Consensus 141 ~l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~-~~d~v~~~~vv~~~G~~~~~~~~~~dl~~a~rg~~~ 219 (522)
+|.+++.++|+ .|.+..+||+|.+ ||+.-||.+.||. +.|.|.++++++ |+ + ...|+.|+||.+..
T Consensus 79 ~l~~~~~~~gl-----~GlE~l~gIPGtV-GGAv~mNaGa~g~ei~d~l~~V~~~~--~~-~----~~~e~~f~YR~S~~ 145 (257)
T PRK13904 79 KIFNYAKKNNL-----GGFEFLGKLPGTL-GGLVKMNAGLKEYEISNNLESICTNG--GW-I----EKEDIGFGYRSSGI 145 (257)
T ss_pred HHHHHHHHCCC-----chhhhhcCCCccH-HHHHHhcCCcCccchheeEEEEEEEe--eE-E----eHHHCcccccCcCC
Confidence 99999999986 5566666666666 7777778888886 469999999998 42 2 23599999997753
Q ss_pred CceEEEEEEEEEEEecC
Q 036220 220 ASFGVILAWKIKLVPVP 236 (522)
Q Consensus 220 g~~Givt~~~lk~~p~p 236 (522)
. .||++++||+.|..
T Consensus 146 ~--~iIl~a~f~l~~~~ 160 (257)
T PRK13904 146 N--GVILEARFKKTHGF 160 (257)
T ss_pred C--cEEEEEEEEECCCC
Confidence 2 49999999998854
No 34
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=96.12 E-value=0.0077 Score=55.56 Aligned_cols=105 Identities=17% Similarity=0.257 Sum_probs=61.6
Q ss_pred eEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCcccCCCCCCeEEEEcCCCCCe-EEeCCCCEEEEcCCCcHHHH
Q 036220 64 EFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETPFIIVDLAKLRSV-KVDIDDNSAWVQAGATIGEV 142 (522)
Q Consensus 64 ~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~~~~~~~d~~~~givIdl~~l~~i-~~d~~~~~v~v~aG~~~~~l 142 (522)
..++.|+|.+|+.++++ . +-...+.+||++....- ..+......+||++++... .|..+++.+++||++++.++
T Consensus 3 ~~~~~P~sl~ea~~ll~---~-~~~a~~vaGgT~l~~~~-~~~~~~~~~lIdl~~i~eL~~I~~~~~~l~IGA~vtl~~l 77 (171)
T PF00941_consen 3 FEYFRPKSLEEALELLA---K-GPDARIVAGGTDLGVQM-REGILSPDVLIDLSRIPELNGISEDDGGLRIGAAVTLSEL 77 (171)
T ss_dssp -EEEE-SSHHHHHHHHH---H-GTTEEEESS-TTHHHHH-HTTS---SEEEEGTTSGGGG-EEEETSEEEEETTSBHHHH
T ss_pred eEEEccCCHHHHHHHHh---c-CCCCEEEeCCCccchhc-ccCccccceEEEeEEecccccEEEeccEEEECCCccHHHH
Confidence 46789999999999998 2 23678889999853111 0100113589999876543 33334679999999999999
Q ss_pred HHH--HHhc------CCcceecCCCCCCccchhhhhCCC
Q 036220 143 YYR--ISEK------SKTHGFPAGLCTSLGVGGHITGGA 173 (522)
Q Consensus 143 ~~~--l~~~------g~~~~~~~g~~~~vgigG~~~ggg 173 (522)
.+. +.+. .....-....-...++||.+..+.
T Consensus 78 ~~~~~~~~~~p~L~~~~~~ias~~IRn~aTiGGNl~~~~ 116 (171)
T PF00941_consen 78 EESPLIQQYFPALAQAARRIASPQIRNRATIGGNLCNAS 116 (171)
T ss_dssp HHHHHHHHHHHHHHHHHCTSS-HHHHTT-BHHHHHHHTB
T ss_pred hhcchhhhhHHHHHHHHHHhCCHhHeeeeeeccccccCc
Confidence 876 1111 000000123334568999995544
No 35
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=95.64 E-value=0.12 Score=55.53 Aligned_cols=151 Identities=15% Similarity=0.179 Sum_probs=89.1
Q ss_pred ceEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCC-cccCCCCCCeEEEEcCCCCCe-EEeCCCCEEEEcCCCcHH
Q 036220 63 PEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGL-SYVSETETPFIIVDLAKLRSV-KVDIDDNSAWVQAGATIG 140 (522)
Q Consensus 63 p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~~~-~~~~d~~~~givIdl~~l~~i-~~d~~~~~v~v~aG~~~~ 140 (522)
...++.|+|.+|+.++++. +. ...+.+||++..-. .... .....+||++++..+ .|..++..+++||++++.
T Consensus 192 ~~~~~~P~sl~Ea~~ll~~---~~-~a~lvAGGTdl~~~~~~~~--~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vT~~ 265 (467)
T TIGR02963 192 GERFIAPTTLDDLAALKAA---HP-DARIVAGSTDVGLWVTKQM--RDLPDVIYVGQVAELKRIEETDDGIEIGAAVTLT 265 (467)
T ss_pred CceEECCCCHHHHHHHHhh---CC-CCEEEecCcchHHHHhcCC--CCCCeEEECCCChhhccEEEcCCEEEEecCCcHH
Confidence 4568999999999988764 32 46788999996321 1111 123588999876543 344456789999999999
Q ss_pred HHHHHHHhcCCc-c-----ee-cCCCCCCccchhhhhCCCCCCcccccCccccce-----e--EEEEEccCCcEecccCC
Q 036220 141 EVYYRISEKSKT-H-----GF-PAGLCTSLGVGGHITGGAYGSMMRKYGLGADNV-----V--DARIVDASGRILDREAM 206 (522)
Q Consensus 141 ~l~~~l~~~g~~-~-----~~-~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v-----~--~~~vv~~~G~~~~~~~~ 206 (522)
++.+.+.++ .. | .+ ....-+..+|||.+..+.- ..|.. + .+++...+|+... +-
T Consensus 266 el~~~l~~~-~p~L~~a~~~ias~qIRN~aTiGGNI~~asP---------~sD~~p~LlALdA~v~l~~~~G~R~v-pl- 333 (467)
T TIGR02963 266 DAYAALAKR-YPELGELLRRFASLQIRNAGTLGGNIANGSP---------IGDSPPALIALGARLTLRKGEGRRTL-PL- 333 (467)
T ss_pred HHHHHHHHH-hHHHHHHHHHhCCHHHcCceecccccccCCC---------chHHHHHHHHcCCEEEEEcCCCcEEE-eH-
Confidence 998766543 11 0 01 1234556678888865332 23432 3 3445555664221 11
Q ss_pred CcchhhhhhccCCCceEEEEEEEEEE
Q 036220 207 GEDFFWAIRGGGGASFGVILAWKIKL 232 (522)
Q Consensus 207 ~~dl~~a~rg~~~g~~Givt~~~lk~ 232 (522)
.|+|-+++--....--||+++.+..
T Consensus 334 -~dF~~g~~kt~L~~~EiI~~I~iP~ 358 (467)
T TIGR02963 334 -EDFFIDYGKTDRQPGEFVEALHVPR 358 (467)
T ss_pred -HHhhcccccccCCCCceEEEEEecC
Confidence 2666554421112235999998763
No 36
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=95.35 E-value=0.13 Score=51.78 Aligned_cols=150 Identities=16% Similarity=0.168 Sum_probs=84.8
Q ss_pred EEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCC-CcccCCCCCCeEEEEcCCCCC---eEEeCCCCEEEEcCCCcHH
Q 036220 65 FIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEG-LSYVSETETPFIIVDLAKLRS---VKVDIDDNSAWVQAGATIG 140 (522)
Q Consensus 65 ~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~~-~~~~~d~~~~givIdl~~l~~---i~~d~~~~~v~v~aG~~~~ 140 (522)
-++.|+|.+|..++++. +. ...+.+||+++.. ..... .....+||++++.. |+.. +++.+++|+++++.
T Consensus 6 ~~~~P~sl~Ea~~ll~~---~~-~a~ivaGGTdl~~~~~~~~--~~p~~lIdl~~i~eL~~I~~~-~~~~l~IGA~vt~~ 78 (291)
T PRK09971 6 EYHEAATLEEAIELLAD---NP-QAKLIAGGTDVLIQLHHHN--DRYRHLVSIHNIAELRGITLA-EDGSIRIGAATTFT 78 (291)
T ss_pred ceeCCCCHHHHHHHHHh---CC-CCEEEeccchHHHHHhCCC--CCCCeEEEcCCChhhhCeEec-CCCEEEEEeCCcHH
Confidence 57899999999988764 22 3578999998631 11111 12358899987554 5432 34679999999999
Q ss_pred HHHH--HHHhcCCc-ce-----e-cCCCCCCccchhhhhCCCCCCcccccCccccce-----eE--EEEEccCCcEeccc
Q 036220 141 EVYY--RISEKSKT-HG-----F-PAGLCTSLGVGGHITGGAYGSMMRKYGLGADNV-----VD--ARIVDASGRILDRE 204 (522)
Q Consensus 141 ~l~~--~l~~~g~~-~~-----~-~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v-----~~--~~vv~~~G~~~~~~ 204 (522)
++.+ .+.++ +. |. + .+..-+..+|||.+..+.- ..|.+ ++ +++..++|+... +
T Consensus 79 ~l~~~~~i~~~-~p~L~~a~~~ia~~qIRN~aTiGGNi~~a~p---------~sD~~~~Llal~A~v~i~~~~g~R~v-p 147 (291)
T PRK09971 79 QIIEDPIIQKH-LPALAEAAVSIGGPQIRNVATIGGNICNGAT---------SADSAPPLFALDAKLEIHSPNGVRFV-P 147 (291)
T ss_pred HHhcChHHHHH-hHHHHHHHHHhCCHHHhcceecccccccCCc---------chhHHHHHHHcCCEEEEEcCCCcEEE-E
Confidence 9985 12111 00 00 1 1244456678888865432 13432 33 344455674221 1
Q ss_pred CCCcchhhhhhccCCCceEEEEEEEEEEEe
Q 036220 205 AMGEDFFWAIRGGGGASFGVILAWKIKLVP 234 (522)
Q Consensus 205 ~~~~dl~~a~rg~~~g~~Givt~~~lk~~p 234 (522)
- .|+|-+.+--....--+||++.+...+
T Consensus 148 ~--~df~~g~~~t~l~~~Eil~~I~iP~~~ 175 (291)
T PRK09971 148 I--NGFYTGPGKVSLEHDEILVAFIIPPEP 175 (291)
T ss_pred H--HHhcCCccccccCCCceEEEEEeCCCC
Confidence 1 256544321111222489999886543
No 37
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=95.00 E-value=0.071 Score=52.55 Aligned_cols=139 Identities=15% Similarity=0.170 Sum_probs=80.9
Q ss_pred EEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCcccCCCCCCeEEEEcCCCCCe-EEeCCCCEEEEcCCCcHHHHHH
Q 036220 66 IFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETPFIIVDLAKLRSV-KVDIDDNSAWVQAGATIGEVYY 144 (522)
Q Consensus 66 vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~~~~~~~d~~~~givIdl~~l~~i-~~d~~~~~v~v~aG~~~~~l~~ 144 (522)
++.|+|.+|..++++ +++-.-.+.+||++..-.-... ...++||++++ .. .|..+++.+++|+++++.++.+
T Consensus 4 y~~P~sl~Ea~~ll~---~~~~~a~~lAGGTdL~~~~~~~---~~~~lIdl~~i-eL~~I~~~~~~l~IGA~~t~~~l~~ 76 (257)
T TIGR03312 4 FFRPESTIQALELKK---RHTGVAVWFAGGSKLNATPTRT---DKKVAISLDKL-ALDKIELQGGALHIGAMCHLQSLID 76 (257)
T ss_pred eECCCCHHHHHHHHH---hCCCCCEEEecCcchhhhhccc---CCCEEEEcCCC-CCCcEEecCCEEEEEeCCcHHHHHh
Confidence 578999999988766 3432356789999975221111 13588999875 43 3444567899999999999875
Q ss_pred H------HHhcCCcceecCCCCCCccchhhhhCCCCCCcccccCccccc-----eeEEEEEccCCcEecccCCCcchhhh
Q 036220 145 R------ISEKSKTHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADN-----VVDARIVDASGRILDREAMGEDFFWA 213 (522)
Q Consensus 145 ~------l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~-----v~~~~vv~~~G~~~~~~~~~~dl~~a 213 (522)
. |.+.- ...-.+..-+..++||.+..+.- ..|. .++.+|...+.+.+.. .|+|-+
T Consensus 77 ~~~~~~~L~~aa-~~va~~qIRN~gTlGGNl~~a~p---------~~D~~~~LlaldA~v~l~~~r~vp~----~dF~~g 142 (257)
T TIGR03312 77 NELTPAALKEAL-GFVYSRHIRNQATIGGEIAAFQS---------ESLLLPVLLALKATVVLANASQMDI----EDYLAS 142 (257)
T ss_pred CcchHHHHHHHH-HHhCCHHHhccccHHHHhhcCCC---------chHHHHHHHHcCCEEEEecCcEEeH----HHhcCC
Confidence 2 22210 00011244456788999865431 1232 2455566555543322 255432
Q ss_pred hhccCCCceEEEEEEEEE
Q 036220 214 IRGGGGASFGVILAWKIK 231 (522)
Q Consensus 214 ~rg~~~g~~Givt~~~lk 231 (522)
.. + -+||++.+.
T Consensus 143 ---~~-~--Ell~~V~iP 154 (257)
T TIGR03312 143 ---EQ-R--ELIVEVIIP 154 (257)
T ss_pred ---CC-C--cEEEEEEcC
Confidence 11 2 588888764
No 38
>PRK09799 putative oxidoreductase; Provisional
Probab=94.69 E-value=0.11 Score=51.24 Aligned_cols=140 Identities=16% Similarity=0.138 Sum_probs=84.2
Q ss_pred EEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCcccCCCCCCeEEEEcCCCCCe-EEeCCCCEEEEcCCCcHHHHH
Q 036220 65 FIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETPFIIVDLAKLRSV-KVDIDDNSAWVQAGATIGEVY 143 (522)
Q Consensus 65 ~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~~~~~~~d~~~~givIdl~~l~~i-~~d~~~~~v~v~aG~~~~~l~ 143 (522)
.+..|+|.+|+.++++ +++-...+.+||++..... .. ....++||++++ .. .+..+++.+++|+++++.++.
T Consensus 4 ~y~~P~sl~Ea~~ll~---~~~~~a~ilAGGT~L~~~~-~~--~~~~~lIdi~~i-eL~~I~~~~~~l~IGA~vT~~~l~ 76 (258)
T PRK09799 4 QFFRPDSVEQALELKR---RYQDEAVWFAGGSKLNATP-TR--TDKKIAISLQDL-ELDWIEWDNGALRIGAMSRLQPLR 76 (258)
T ss_pred cEeCCCCHHHHHHHHH---hCCCCCEEEecCCChHhhh-CC--CCCCEEEEcCCC-CCCeEEecCCEEEEccCCcHHHHH
Confidence 4678999999998876 3433467899999974211 11 124689999975 44 444466799999999999998
Q ss_pred HHH------HhcCCcceecCCCCCCccchhhhhCCCCCCcccccCccccc-----eeEEEEEccCCcEecccCCCcchhh
Q 036220 144 YRI------SEKSKTHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADN-----VVDARIVDASGRILDREAMGEDFFW 212 (522)
Q Consensus 144 ~~l------~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~-----v~~~~vv~~~G~~~~~~~~~~dl~~ 212 (522)
+.. .+.- ...-....-+..+|||.+..+.- ..|. .++.+|+..+++.+.. .|+|-
T Consensus 77 ~~~~~~~~L~~a~-~~vas~qIRN~aTiGGNl~~a~p---------~sD~~p~LlAldA~v~l~~~r~vpl----~~f~~ 142 (258)
T PRK09799 77 DARFIPAALREAL-GFVYSRHLRNQSTIGGEIAARQE---------ESVLLPVLLALDAELVFGNGETLSI----EDYLA 142 (258)
T ss_pred hCcccHHHHHHHH-HHhCCHHHhccchhHHHhhcCCc---------cHHHHHHHHHcCCEEEEecCcEEeH----HHhcC
Confidence 642 1110 00001234455678888864421 1333 2566666666644422 24442
Q ss_pred hhhccCCCceEEEEEEEEE
Q 036220 213 AIRGGGGASFGVILAWKIK 231 (522)
Q Consensus 213 a~rg~~~g~~Givt~~~lk 231 (522)
|. .-.|||++.+.
T Consensus 143 ---g~---~~Eil~~I~iP 155 (258)
T PRK09799 143 ---CP---CDRLLTEIIIP 155 (258)
T ss_pred ---CC---CCcEEEEEEcC
Confidence 22 22588888774
No 39
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. It is predominantly found in plant cytokinin dehydrogenase 1, where it is capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin []. ; GO: 0019139 cytokinin dehydrogenase activity, 0050660 flavin adenine dinucleotide binding, 0009690 cytokinin metabolic process, 0055114 oxidation-reduction process; PDB: 2EXR_A 2Q4W_A 3S1E_A 1W1Q_A 2QPM_A 3C0P_A 3BW7_A 3S1C_A 1W1S_A 2QKN_A ....
Probab=92.77 E-value=0.049 Score=53.87 Aligned_cols=33 Identities=27% Similarity=0.561 Sum_probs=25.0
Q ss_pred chhhhhhccccHHHHHHhhhhcCCCCccccCCCC
Q 036220 477 SVWGYKYFKDNFNRLVKVKTKVDPDNFFRHEQSI 510 (522)
Q Consensus 477 ~~~~~~yyg~n~~RL~~IK~kyDP~~vF~~~q~i 510 (522)
++|. .-||+.|+|+++.|++|||.+++.-.|.|
T Consensus 248 ~dW~-~HFG~~W~~f~~~K~~yDP~~IL~PGq~I 280 (281)
T PF09265_consen 248 EDWR-RHFGPKWERFVERKRRYDPKAILAPGQGI 280 (281)
T ss_dssp HHHH-HHHGHHHHHHHHHHHHH-TT--B-GGG-S
T ss_pred HHHH-HHhchHHHHHHHHHHhCCchhhcCCCCCC
Confidence 3795 56799999999999999999999999887
No 40
>PLN02906 xanthine dehydrogenase
Probab=92.08 E-value=0.61 Score=56.46 Aligned_cols=152 Identities=14% Similarity=0.149 Sum_probs=86.6
Q ss_pred eEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCcccCCCCCCeEEEEcCCCCCe-EEeCCCCEEEEcCCCcHHHH
Q 036220 64 EFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETPFIIVDLAKLRSV-KVDIDDNSAWVQAGATIGEV 142 (522)
Q Consensus 64 ~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~~~~~~~d~~~~givIdl~~l~~i-~~d~~~~~v~v~aG~~~~~l 142 (522)
..++.|+|.+|+.++++. +. ...+.+||++..-.-... .....++||++++..+ .|..++..+++||++++.++
T Consensus 229 ~~~~~P~tl~ea~~ll~~---~~-~a~ivAGGTdl~~~~~~~-~~~~~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~el 303 (1319)
T PLN02906 229 LTWYRPTSLQHLLELKAE---YP-DAKLVVGNTEVGIEMRFK-NAQYPVLISPTHVPELNAIKVKDDGLEIGAAVRLSEL 303 (1319)
T ss_pred ceEECcCCHHHHHHHHHh---CC-CCEEEEcCchhHHHhhhc-cCCCCeEEECCCChhhhcEEecCCEEEEecCCcHHHH
Confidence 458899999999988764 22 356788999974211110 0124589999875554 34445678999999999999
Q ss_pred HHHHHhcCC---c-----ce--------ec-CCCCCCccchhhhhCCCCCCcccccCccccce-----eEEEEEc--cCC
Q 036220 143 YYRISEKSK---T-----HG--------FP-AGLCTSLGVGGHITGGAYGSMMRKYGLGADNV-----VDARIVD--ASG 198 (522)
Q Consensus 143 ~~~l~~~g~---~-----~~--------~~-~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v-----~~~~vv~--~~G 198 (522)
.+.|.+.-. . +. +. .-.-+..+|||.+..+.- ..|.. ++.+|++ .+|
T Consensus 304 ~~~l~~~i~~~~~~~~~~~p~L~~~~~~ias~qIRN~aTiGGNI~~asP---------~sD~~p~LlAl~A~v~l~s~~g 374 (1319)
T PLN02906 304 QNLFRKVVKERPAHETSACKAFIEQLKWFAGTQIRNVASIGGNICTASP---------ISDLNPLWMAAGATFVIISCDG 374 (1319)
T ss_pred HHHHHHHhhhcchhhhHHHHHHHHHHHHhCCHhhcCceechhhhccCCC---------chhHHHHHHHcCcEEEEEcCCC
Confidence 986544310 0 00 11 234455678888865332 23332 4444444 444
Q ss_pred cEecccCCCcchhhhhhccCCCceEEEEEEEEE
Q 036220 199 RILDREAMGEDFFWAIRGGGGASFGVILAWKIK 231 (522)
Q Consensus 199 ~~~~~~~~~~dl~~a~rg~~~g~~Givt~~~lk 231 (522)
..++..- .|+|-+++--....--|||++.|.
T Consensus 375 ~~R~vpl--~dFf~g~~kt~L~~~Eil~~I~iP 405 (1319)
T PLN02906 375 DIRSVPA--SDFFLGYRKVDLKPDEILLSVFLP 405 (1319)
T ss_pred CeEEEEH--HHhcCccccccCCCCceEEEEEcc
Confidence 2222221 266655442111222489988875
No 41
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit. This model represents the second largest chain, beta, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=89.91 E-value=0.53 Score=47.87 Aligned_cols=100 Identities=17% Similarity=0.151 Sum_probs=62.4
Q ss_pred EEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCcccCCCCCCeEEEEcCCC---CCeEEeCCCCEEEEcCCCcHHH
Q 036220 65 FIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETPFIIVDLAKL---RSVKVDIDDNSAWVQAGATIGE 141 (522)
Q Consensus 65 ~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~~~~~~~d~~~~givIdl~~l---~~i~~d~~~~~v~v~aG~~~~~ 141 (522)
.++.|+|.+|..++++- ++ .-.+.+||++...... .+-.....+||++++ +.|+. +++.+++|+++++.+
T Consensus 6 ~~~~P~sl~eA~~ll~~---~~-~a~ivaGGTdl~~~~~-~~~~~p~~lIdi~~I~eL~~I~~--~~~~l~IGA~vT~~~ 78 (321)
T TIGR03195 6 RTLRPASLADAVAALAA---HP-AARPLAGGTDLLPNLR-RGLGQPETLVDLTGIDEIAQLST--LADGLRIGAGVTLAA 78 (321)
T ss_pred eEECCCCHHHHHHHHhh---CC-CCEEEEccchHHHHHh-cccCCCCeEEECCCChhhccEEe--cCCEEEEeccCcHHH
Confidence 47899999999888763 32 3467999998632111 110124688999865 44554 457899999999999
Q ss_pred HHHH---------HHhcCCcceecCCCCCCccchhhhhCC
Q 036220 142 VYYR---------ISEKSKTHGFPAGLCTSLGVGGHITGG 172 (522)
Q Consensus 142 l~~~---------l~~~g~~~~~~~g~~~~vgigG~~~gg 172 (522)
+.+. |.+.- ...-.+..-...+|||.+.+.
T Consensus 79 l~~~~~i~~~~p~L~~a~-~~ias~qIRN~aTiGGNi~~~ 117 (321)
T TIGR03195 79 LAEDALVRTRWPALAQAA-RAVAGPTHRAAATLGGNLCLD 117 (321)
T ss_pred HhhChhhHhHhHHHHHHH-HHhCCHHHhCceecHHhhhcc
Confidence 8652 11110 000012344566899999753
No 42
>PLN00107 FAD-dependent oxidoreductase; Provisional
Probab=89.70 E-value=0.95 Score=44.05 Aligned_cols=27 Identities=33% Similarity=0.570 Sum_probs=22.4
Q ss_pred hhhhhccccHHHHHHhhhhcCCCCccccC
Q 036220 479 WGYKYFKDNFNRLVKVKTKVDPDNFFRHE 507 (522)
Q Consensus 479 ~~~~yyg~n~~RL~~IK~kyDP~~vF~~~ 507 (522)
....| .++++..+||+++||+|+|.++
T Consensus 171 l~~lY--Pr~~dFlavR~~lDP~G~F~N~ 197 (257)
T PLN00107 171 AIAKY--KKAGEFLKVKERLDPEGLFSSE 197 (257)
T ss_pred HHHHC--cCHHHHHHHHHHhCCCCccCCH
Confidence 34445 7899999999999999999754
No 43
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=87.90 E-value=0.57 Score=45.10 Aligned_cols=65 Identities=8% Similarity=0.111 Sum_probs=38.5
Q ss_pred chhhhHHHHHHHHHHHhccccccCCCCceeccccCcccCCCCCCCcccccchhhhhhccc-cHHHHHHhhhhcCCCCccc
Q 036220 427 EKNATKHIDWIRRLYNYMGPYVSMLPRAAYVNYRDLDLGMNKNGSSFIKSSVWGYKYFKD-NFNRLVKVKTKVDPDNFFR 505 (522)
Q Consensus 427 ~~~~~~~~~~~~~~~~~l~~~~~~~~~g~Y~Ny~d~~~~~~~~~~~~~~~~~~~~~yyg~-n~~RL~~IK~kyDP~~vF~ 505 (522)
++..+...++++.+.+.+..+ +|+-..+...... ...|-..++|+ .+.-+++||+.+||+|+++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~-----gG~is~eHG~G~~----------k~~~~~~~~~~~~~~~~~~iK~~~DP~~ilN 244 (248)
T PF02913_consen 180 PEEPERAEALWDELYELVLEL-----GGSISAEHGIGKL----------KKPYLEEEYGPAALRLMRAIKQAFDPNGILN 244 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-----T-BBSSSSGGGHH----------HHHHHCHHCHHHHHHHHHHHHHHH-TTS-BS
T ss_pred HHHHHHHHHHHHHHHHHHHhc-----ccccccccchhhh----------hHHHHHHhcchHHHHHHHHhhhccCCccCCC
Confidence 455666777788877666544 1222222222111 12355566665 7999999999999999986
Q ss_pred c
Q 036220 506 H 506 (522)
Q Consensus 506 ~ 506 (522)
-
T Consensus 245 P 245 (248)
T PF02913_consen 245 P 245 (248)
T ss_dssp T
T ss_pred C
Confidence 3
No 44
>TIGR03199 pucC xanthine dehydrogenase C subunit. This gene has been characterized in B. subtilis as the FAD binding-subunit of xanthine dehydrogenase (pucC), acting in conjunction with pucD, the molybdopterin-binding subunit and pucE, the FeS-binding subunit.
Probab=87.72 E-value=0.76 Score=45.51 Aligned_cols=98 Identities=15% Similarity=0.114 Sum_probs=60.6
Q ss_pred cCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCcccCC-CCCCeEEEEcCCCCCe-EEeCCCCEEEEcCCCcHHHHHHH-
Q 036220 69 PLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSE-TETPFIIVDLAKLRSV-KVDIDDNSAWVQAGATIGEVYYR- 145 (522)
Q Consensus 69 P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~~~~~~~d-~~~~givIdl~~l~~i-~~d~~~~~v~v~aG~~~~~l~~~- 145 (522)
|+|.+|+.++++. +. ...+.+||+++.-.- ..+ -.....+||++++..+ .|+.+++.+++|+++++.++.+.
T Consensus 1 P~sl~ea~~ll~~---~~-~a~ivaGgT~l~~~~-~~~~~~~~~~lIdi~~i~eL~~I~~~~~~l~IGA~vt~~~l~~~~ 75 (264)
T TIGR03199 1 PAALDEAWSLLEK---AP-DSTFVSGSTLLQLQW-EKGTLPMKQHLVSLEGIDELKGISTSDTHVSIGALTTLNECRKNP 75 (264)
T ss_pred CCCHHHHHHHHHh---CC-CCEEEEccChHHHHH-hcCcCCCCCeEEEcCCChhhCcEEecCCEEEEecCCcHHHHhhCh
Confidence 7888888888874 22 357899999863111 110 0113588999976554 44556789999999999999642
Q ss_pred -H-------HhcCCcceecCCCCCCccchhhhhCC
Q 036220 146 -I-------SEKSKTHGFPAGLCTSLGVGGHITGG 172 (522)
Q Consensus 146 -l-------~~~g~~~~~~~g~~~~vgigG~~~gg 172 (522)
+ .+. ....-.+..-+..++||.+..+
T Consensus 76 ~i~~~~p~L~~a-~~~ia~~qIRN~aTlGGNl~~~ 109 (264)
T TIGR03199 76 LIKRALPCFVDA-ASAIAAPGVRNRATIGGNIASG 109 (264)
T ss_pred HhHhHhHHHHHH-HHHhcCHHHhcceecHHhccCc
Confidence 1 111 0000012444567899999654
No 45
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=86.19 E-value=1.6 Score=44.39 Aligned_cols=141 Identities=17% Similarity=0.175 Sum_probs=81.6
Q ss_pred CceEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCcccCCCCCCeEEEEcCCCCCe-EEeCCCCEEEEcCCCcHH
Q 036220 62 KPEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETPFIIVDLAKLRSV-KVDIDDNSAWVQAGATIG 140 (522)
Q Consensus 62 ~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~~~~~~~d~~~~givIdl~~l~~i-~~d~~~~~v~v~aG~~~~ 140 (522)
.-..++.|.+.+|+..++.. +-..++..|++.+.-+.+..-. +-..||-..++..+ +|+...+.+++++|+++.
T Consensus 202 ~~~r~~~P~~l~D~a~l~aa----~P~AtivAGsTDvgLwVtk~mr-~l~~vi~v~~l~eL~~i~~~~~~l~iGAgvt~t 276 (493)
T COG4630 202 GDDRFIVPATLADFADLLAA----HPGATIVAGSTDVGLWVTKQMR-DLNPVIFVGHLAELRRIEVSTGGLEIGAGVTYT 276 (493)
T ss_pred CCceeEeeccHHHHHHHHhh----CCCCEEEecCcchhhHHHHHHh-hcCCeEEecchhhhheeeecCCcEEEccCccHH
Confidence 34568899999999988753 2356677788776422221100 01234444444443 444567899999999999
Q ss_pred HHHHHHHhcCCcce--e-cCC---CCCCccchhhhhCCCCCCcccccCcc--ccceeEEEEEccCCcEec-ccCCCcchh
Q 036220 141 EVYYRISEKSKTHG--F-PAG---LCTSLGVGGHITGGAYGSMMRKYGLG--ADNVVDARIVDASGRILD-REAMGEDFF 211 (522)
Q Consensus 141 ~l~~~l~~~g~~~~--~-~~g---~~~~vgigG~~~ggg~g~~~~~~G~~--~d~v~~~~vv~~~G~~~~-~~~~~~dl~ 211 (522)
+.++.|.++=-.|. + --| .-+.-+|||.++.|.-- |-+ .=..++.++++-.|+-.+ .+- .|+|
T Consensus 277 ~a~~~la~~~P~l~~L~~r~gg~qvRN~gTlGGNIangSPI------GDtPPaLIALgA~ltLr~g~~~RtlPL--e~~F 348 (493)
T COG4630 277 QAYRALAGRYPALGELWDRFGGEQVRNMGTLGGNIANGSPI------GDTPPALIALGATLTLRSGDGRRTLPL--EDYF 348 (493)
T ss_pred HHHHHHHhhCchHHHHHHHhcchhhhccccccccccCCCcC------CCCCchhhhcCcEEEEEecCCcccccH--HHHH
Confidence 99999987611110 0 012 22334567776544311 211 123577888887776554 332 2788
Q ss_pred hhhh
Q 036220 212 WAIR 215 (522)
Q Consensus 212 ~a~r 215 (522)
-+|+
T Consensus 349 i~Y~ 352 (493)
T COG4630 349 IAYG 352 (493)
T ss_pred HHhh
Confidence 8886
No 46
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1.1.3.37 from EC, which is involved in the final step of the D-erythroascorbic acid biosynthesis pathway [].; GO: 0003885 D-arabinono-1,4-lactone oxidase activity, 0055114 oxidation-reduction process, 0016020 membrane; PDB: 2VFU_A 2VFV_A 2VFT_A 2VFS_A 2VFR_A.
Probab=86.16 E-value=0.73 Score=45.36 Aligned_cols=27 Identities=22% Similarity=0.524 Sum_probs=18.8
Q ss_pred hhhhhccccHHHHHHhhhhcCCCCccccC
Q 036220 479 WGYKYFKDNFNRLVKVKTKVDPDNFFRHE 507 (522)
Q Consensus 479 ~~~~yyg~n~~RL~~IK~kyDP~~vF~~~ 507 (522)
..+.| +++++..++|+++||+|+|.++
T Consensus 228 l~~~Y--p~~~~F~~~r~~~DP~g~F~n~ 254 (259)
T PF04030_consen 228 LRKLY--PRLDDFLAVRKKLDPQGVFLND 254 (259)
T ss_dssp HHHT---TTHHHHHHHHHHH-TT-TT--H
T ss_pred HHHHC--cCHHHHHHHHHHhCCCCCCCCH
Confidence 44444 8999999999999999999763
No 47
>PLN00192 aldehyde oxidase
Probab=81.03 E-value=3.7 Score=50.02 Aligned_cols=107 Identities=16% Similarity=0.152 Sum_probs=67.4
Q ss_pred ceEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCcccCCCCCCeEEEEcCCCCCe-EEeCCCCEEEEcCCCcHHH
Q 036220 63 PEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETPFIIVDLAKLRSV-KVDIDDNSAWVQAGATIGE 141 (522)
Q Consensus 63 p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~~~~~~~d~~~~givIdl~~l~~i-~~d~~~~~v~v~aG~~~~~ 141 (522)
..-++.|+|.+|+.++++.....+-...+..||++..-.-. . ....++||++++..+ .|..++..+++||++++.+
T Consensus 233 ~~~~~~P~sl~ea~~ll~~~~~~~~~a~lvAGgTdl~~~k~-~--~~p~~lIdi~~I~EL~~I~~~~~~l~IGA~vTl~e 309 (1344)
T PLN00192 233 RYRWYTPVSVEELQSLLESNNFDGVSVKLVVGNTGTGYYKD-E--ELYDKYIDIRHIPELSMIRRDEKGIEIGAVVTISK 309 (1344)
T ss_pred CceEECcCCHHHHHHHHHhCCCCCCCeEEEEeCCcceeeec-c--CCCCeEEEcCCChhhhcEEecCCEEEEeecCcHHH
Confidence 44689999999999887642101123677889999642211 1 124689999875544 3444567899999999999
Q ss_pred HHHHHHhcCCc---ce--------ec-CCCCCCccchhhhhCC
Q 036220 142 VYYRISEKSKT---HG--------FP-AGLCTSLGVGGHITGG 172 (522)
Q Consensus 142 l~~~l~~~g~~---~~--------~~-~g~~~~vgigG~~~gg 172 (522)
+.+.+.+.... +. +. .-.-+..+|||.+..+
T Consensus 310 l~~~l~~~~~~~~~~p~L~~~~~~vAs~qIRN~aTlGGNI~~A 352 (1344)
T PLN00192 310 AIEALREESKSEYVFKKIADHMEKIASRFVRNTGSIGGNLVMA 352 (1344)
T ss_pred HHHHHHhhccccchHHHHHHHHHHhcChhhccceechhhhccc
Confidence 98766553110 00 11 2344556788888654
No 48
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=78.85 E-value=2.9 Score=45.89 Aligned_cols=27 Identities=37% Similarity=0.566 Sum_probs=22.3
Q ss_pred hhhhhccccHHHHHHhhhhcCCCCccccC
Q 036220 479 WGYKYFKDNFNRLVKVKTKVDPDNFFRHE 507 (522)
Q Consensus 479 ~~~~yyg~n~~RL~~IK~kyDP~~vF~~~ 507 (522)
..+.| .++++.++||+++||+|+|.++
T Consensus 477 l~~~Y--P~~~dF~alR~~~DP~g~F~N~ 503 (557)
T TIGR01677 477 VIRKY--PNADKFLKVKDSYDPKGLFSSE 503 (557)
T ss_pred HHHhC--CCHHHHHHHHHhcCCCCccCCH
Confidence 34445 5999999999999999999754
No 49
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=78.31 E-value=6.6 Score=47.84 Aligned_cols=79 Identities=11% Similarity=0.089 Sum_probs=54.9
Q ss_pred eEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCcccCCCCCCeEEEEcCCCCCe-EEeCCCCEEEEcCCCcHHHH
Q 036220 64 EFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETPFIIVDLAKLRSV-KVDIDDNSAWVQAGATIGEV 142 (522)
Q Consensus 64 ~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~~~~~~~d~~~~givIdl~~l~~i-~~d~~~~~v~v~aG~~~~~l 142 (522)
...+.|+|.+|+.++++. +. ...+..||+++.-.-.... .....+||+++...+ .|..++..+++||++++.++
T Consensus 237 ~~~~~P~tl~ea~~ll~~---~~-~a~lvAGGTdl~~~~k~~~-~~~~~lIdi~~I~EL~~i~~~~~~l~IGA~vT~~el 311 (1330)
T TIGR02969 237 MMWISPVTLKELLEAKFK---YP-QAPVVMGNTSVGPEVKFKG-VFHPVIISPDRIEELSVVNHTGDGLTLGAGLSLAQV 311 (1330)
T ss_pred ceEECCCCHHHHHHHHHh---CC-CCEEEecCcchHHHhhhcc-CCCCeEEECCCChhhhcEEEcCCEEEEeccccHHHH
Confidence 468999999999988764 22 3567889999742111110 123478999875554 34445678999999999999
Q ss_pred HHHHH
Q 036220 143 YYRIS 147 (522)
Q Consensus 143 ~~~l~ 147 (522)
.+.|.
T Consensus 312 ~~~l~ 316 (1330)
T TIGR02969 312 KDILA 316 (1330)
T ss_pred HHHHH
Confidence 98654
No 50
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=77.51 E-value=3.7 Score=45.09 Aligned_cols=36 Identities=22% Similarity=0.461 Sum_probs=30.0
Q ss_pred chhhhhhcc-ccHHHHHHhhhhcCCCCccccCCCCCC
Q 036220 477 SVWGYKYFK-DNFNRLVKVKTKVDPDNFFRHEQSIPP 512 (522)
Q Consensus 477 ~~~~~~yyg-~n~~RL~~IK~kyDP~~vF~~~q~i~~ 512 (522)
..|...+|| +.++-+++||+.+||+|+++-..-++|
T Consensus 515 ~~~l~~~~g~~~~~lm~~IK~a~DP~gILNPGKi~~~ 551 (555)
T PLN02805 515 MKYLEKELGIEALQTMKRIKKALDPNNIMNPGKLIPP 551 (555)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCcCcCCCCCceeCc
Confidence 368888888 579999999999999999987665554
No 51
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=76.96 E-value=2.6 Score=44.62 Aligned_cols=29 Identities=21% Similarity=0.372 Sum_probs=24.4
Q ss_pred hhhhhhcc-ccHHHHHHhhhhcCCCCcccc
Q 036220 478 VWGYKYFK-DNFNRLVKVKTKVDPDNFFRH 506 (522)
Q Consensus 478 ~~~~~yyg-~n~~RL~~IK~kyDP~~vF~~ 506 (522)
.|....|| ..++-|++||+.+||+|+|+-
T Consensus 382 ~~~~~~~~~~~~~~~~~iK~~fDP~~ilNP 411 (413)
T TIGR00387 382 EFMPYKFNEKELETMRAIKKAFDPDNILNP 411 (413)
T ss_pred HHHHHhcCHHHHHHHHHHHHHcCcCcCCCC
Confidence 46667777 579999999999999999863
No 52
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]
Probab=76.26 E-value=7.9 Score=38.64 Aligned_cols=77 Identities=19% Similarity=0.183 Sum_probs=53.5
Q ss_pred ceEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCcccCCCCCCeEEEEcCCCCC-e-EEeCCCCEEEEcCCCcHH
Q 036220 63 PEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETPFIIVDLAKLRS-V-KVDIDDNSAWVQAGATIG 140 (522)
Q Consensus 63 p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~~~~~~~d~~~~givIdl~~l~~-i-~~d~~~~~v~v~aG~~~~ 140 (522)
+..+.+|.|.+|..++++ +.+ -..+.+|||++...-... -....-+||++++.. . .+..+++.+++||-+++.
T Consensus 3 ~f~y~rp~Sv~eA~~ll~---~~~-~a~~laGGt~L~~~~k~~-~~~p~~lVdI~~l~~~~~~~~~~g~~l~IGA~vt~~ 77 (284)
T COG1319 3 NFEYYRPASVEEALNLLA---RAP-DAKYLAGGTDLLPLMKLG-IERPDHLVDINGLDELLGIVTTEGGSLRIGALVTLT 77 (284)
T ss_pred ceEEECCCCHHHHHHHHH---hCC-CcEEeeCcchHHHHhhcc-cCCcceEEEecCChhhhceEeecCCEEEEeecccHH
Confidence 556789999998877776 444 678899999976321110 012457899988742 2 333456779999999999
Q ss_pred HHHH
Q 036220 141 EVYY 144 (522)
Q Consensus 141 ~l~~ 144 (522)
++.+
T Consensus 78 ei~~ 81 (284)
T COG1319 78 EIAR 81 (284)
T ss_pred HHHh
Confidence 9963
No 53
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=60.88 E-value=17 Score=38.99 Aligned_cols=67 Identities=13% Similarity=0.137 Sum_probs=49.7
Q ss_pred HHhhhcccCCCCCCCcc-eecCCCccchhHHhhcccccccCCCCCCCceEEEecCCHHHHHHHHHHHHHc-CCeEEE
Q 036220 17 FSKCLSVNSELYVPSST-FFSQNNSSFSSILESSAQNLRYLVPSMPKPEFIFTPLYEAHVQAAVICCKEL-GVHLRV 91 (522)
Q Consensus 17 l~~c~~~~~~~~~~~~~-v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~P~t~~dv~~~v~~a~~~-~~~v~~ 91 (522)
|.+-.+++.. ++.+ ++..+-|+-+.+.. +...+ .....|-.+++|.|.++|..+|+.|+++ ..|+.+
T Consensus 113 Lv~kara~G~---~I~gvvIsAGIP~le~A~E-lI~~L----~~~G~~yv~fKPGtIeqI~svi~IAka~P~~pIil 181 (717)
T COG4981 113 LVQKARASGA---PIDGVVISAGIPSLEEAVE-LIEEL----GDDGFPYVAFKPGTIEQIRSVIRIAKANPTFPIIL 181 (717)
T ss_pred HHHHHHhcCC---CcceEEEecCCCcHHHHHH-HHHHH----hhcCceeEEecCCcHHHHHHHHHHHhcCCCCceEE
Confidence 4444455443 6889 88999999998854 22111 2346888999999999999999999998 466665
No 54
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=48.97 E-value=9.6 Score=40.05 Aligned_cols=20 Identities=30% Similarity=0.823 Sum_probs=19.1
Q ss_pred ccHHHHHHhhhhcCCCCccc
Q 036220 486 DNFNRLVKVKTKVDPDNFFR 505 (522)
Q Consensus 486 ~n~~RL~~IK~kyDP~~vF~ 505 (522)
.|+++-.+||+++||+++|.
T Consensus 485 ~n~~~flkvr~~lDP~~lFs 504 (518)
T KOG4730|consen 485 KNLDKFLKVRKELDPKGLFS 504 (518)
T ss_pred cChHHHHHHHHhcCccchhh
Confidence 89999999999999999994
No 55
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=46.54 E-value=12 Score=38.74 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=18.7
Q ss_pred ccc-HHHHHHhhhhcCCCCcccc
Q 036220 485 KDN-FNRLVKVKTKVDPDNFFRH 506 (522)
Q Consensus 485 g~n-~~RL~~IK~kyDP~~vF~~ 506 (522)
+.+ .+-.++||++|||.++|+-
T Consensus 323 ~~~~~~l~~~lK~~fDP~~ilnp 345 (352)
T PRK11282 323 PAPLLRIHRRLKQAFDPAGIFNP 345 (352)
T ss_pred CHHHHHHHHHHHHhcCcccCCCC
Confidence 455 7888999999999999963
No 56
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=46.32 E-value=28 Score=35.24 Aligned_cols=56 Identities=25% Similarity=0.360 Sum_probs=40.1
Q ss_pred eecCCCccchhHHhhcccccccCCCCCCCceEEEecCC------HHHHHHHHHHHHHcC------CeEEEEeCCC
Q 036220 34 FFSQNNSSFSSILESSAQNLRYLVPSMPKPEFIFTPLY------EAHVQAAVICCKELG------VHLRVRSGGH 96 (522)
Q Consensus 34 v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~P~t------~~dv~~~v~~a~~~~------~~v~~~ggGh 96 (522)
|..|+...|.+.+... +.||. ....+++|.. +++|.++++.+.+.+ +=|.+||||+
T Consensus 20 ITs~~gAa~~D~~~~~--~~r~~-----~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs 87 (319)
T PF02601_consen 20 ITSPTGAAIQDFLRTL--KRRNP-----IVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGS 87 (319)
T ss_pred EeCCchHHHHHHHHHH--HHhCC-----CcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCC
Confidence 4556777888886532 44775 4567777765 579999999998754 5678888885
No 57
>PLN03213 repressor of silencing 3; Provisional
Probab=40.52 E-value=8.3 Score=40.59 Aligned_cols=30 Identities=43% Similarity=0.609 Sum_probs=21.2
Q ss_pred HHHHHHhh---------hhcCCCCccccCCCCCCCC----Ccccccc
Q 036220 488 FNRLVKVK---------TKVDPDNFFRHEQSIPPLP----LCSEHCL 521 (522)
Q Consensus 488 ~~RL~~IK---------~kyDP~~vF~~~q~i~~~~----~~~~~~~ 521 (522)
++||++|| .||- |++-.-=+|.| +|+|||.
T Consensus 124 FPrLrKvKslPfsGTGKHkYS----Fr~ieVp~slP~HFCDCEEH~g 166 (759)
T PLN03213 124 FPRLRKVKAMPLSGTGKHKYS----FQRVPLSSSLPKSFCDCEEHSN 166 (759)
T ss_pred ccccccccccccCCCccceee----eeeccCCCCCCccccchhhccC
Confidence 67999999 7886 76533222444 9999995
No 58
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=39.04 E-value=1.6e+02 Score=31.05 Aligned_cols=34 Identities=24% Similarity=0.249 Sum_probs=32.3
Q ss_pred CceEEEecCCHHHHHHHHHHHHHcCCeEEEEeCC
Q 036220 62 KPEFIFTPLYEAHVQAAVICCKELGVHLRVRSGG 95 (522)
Q Consensus 62 ~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggG 95 (522)
....|+.|+..|-...+.+.|+++|+++.-|+.|
T Consensus 260 ~~llIlVPRHpERf~~v~~l~~~~gl~~~~rS~~ 293 (419)
T COG1519 260 NLLLILVPRHPERFKAVENLLKRKGLSVTRRSQG 293 (419)
T ss_pred CceEEEecCChhhHHHHHHHHHHcCCeEEeecCC
Confidence 5679999999999999999999999999999988
No 59
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=37.03 E-value=1e+02 Score=30.40 Aligned_cols=92 Identities=15% Similarity=0.086 Sum_probs=59.0
Q ss_pred CcceecCCCccchhHHhhcccccccCCCCCCCceEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCcccCCCCCC
Q 036220 31 SSTFFSQNNSSFSSILESSAQNLRYLVPSMPKPEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETP 110 (522)
Q Consensus 31 ~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggGh~~~~~~~~~d~~~~ 110 (522)
...|++||-|+-+.... . ...++.+|+.++-+...+.|.+-.+.=|||... ...
T Consensus 132 ~a~vvTPNl~EA~~L~g--------------~----~~i~~~~d~~~a~~~i~~~g~~~VliKGGH~~~---~~~----- 185 (263)
T COG0351 132 LATVVTPNLPEAEALSG--------------L----PKIKTEEDMKEAAKLLHELGAKAVLIKGGHLEG---EAV----- 185 (263)
T ss_pred cCeEecCCHHHHHHHcC--------------C----CccCCHHHHHHHHHHHHHhCCCEEEEcCCCCCC---Cce-----
Confidence 34599999998877532 1 377899999999888889998888888899764 112
Q ss_pred eEEEEcCCCCCe---EEeCCCCEEEEcCCCcHHHHHHHHHhcCC
Q 036220 111 FIIVDLAKLRSV---KVDIDDNSAWVQAGATIGEVYYRISEKSK 151 (522)
Q Consensus 111 givIdl~~l~~i---~~d~~~~~v~v~aG~~~~~l~~~l~~~g~ 151 (522)
-++.|-..+..+ .++.. =+=|.|+++......-..+|.
T Consensus 186 D~l~~~~~~~~f~~~ri~t~---~tHGTGCTlSaAIaa~LA~G~ 226 (263)
T COG0351 186 DVLYDGGSFYTFEAPRIPTK---NTHGTGCTLSAAIAANLAKGL 226 (263)
T ss_pred eEEEcCCceEEEeccccCCC---CCCCccHHHHHHHHHHHHcCC
Confidence 144443311111 12211 135889998876655555543
No 60
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=35.43 E-value=40 Score=35.88 Aligned_cols=56 Identities=25% Similarity=0.305 Sum_probs=40.6
Q ss_pred eecCCCccchhHHhhcccccccCCCCCCCceEEEecCCH------HHHHHHHHHHHHc--CCeEEEEeCCC
Q 036220 34 FFSQNNSSFSSILESSAQNLRYLVPSMPKPEFIFTPLYE------AHVQAAVICCKEL--GVHLRVRSGGH 96 (522)
Q Consensus 34 v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~P~t~------~dv~~~v~~a~~~--~~~v~~~ggGh 96 (522)
|..|+...+.+.++ .-+.||+ .-...++|..+ .+|.++++.+.+. .+=|.+||||+
T Consensus 141 iTs~~gAa~~D~~~--~~~~r~p-----~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS 204 (438)
T PRK00286 141 ITSPTGAAIRDILT--VLRRRFP-----LVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGGS 204 (438)
T ss_pred EeCCccHHHHHHHH--HHHhcCC-----CCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCC
Confidence 55667778888865 3356775 34567777766 7999999998874 56688888883
No 61
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=30.63 E-value=54 Score=30.48 Aligned_cols=25 Identities=28% Similarity=0.155 Sum_probs=21.7
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCCCC
Q 036220 75 VQAAVICCKELGVHLRVRSGGHDYE 99 (522)
Q Consensus 75 v~~~v~~a~~~~~~v~~~ggGh~~~ 99 (522)
..+.++|++++++|+.|.++|-++-
T Consensus 78 fKef~e~ike~di~fiVvSsGm~~f 102 (220)
T COG4359 78 FKEFVEWIKEHDIPFIVVSSGMDPF 102 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCchH
Confidence 4567889999999999999999854
No 62
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=30.36 E-value=29 Score=37.98 Aligned_cols=26 Identities=15% Similarity=0.372 Sum_probs=21.0
Q ss_pred hhhhhccccHHHHHHhhhhcCCCCccccC
Q 036220 479 WGYKYFKDNFNRLVKVKTKVDPDNFFRHE 507 (522)
Q Consensus 479 ~~~~yyg~n~~RL~~IK~kyDP~~vF~~~ 507 (522)
|.+.| + +++-.+|++++||+++|.++
T Consensus 509 l~~~Y-P--~d~F~~~R~~lDP~g~F~N~ 534 (541)
T TIGR01676 509 LKKKF-P--VDASNKARKALDPNKILSNN 534 (541)
T ss_pred HHhhC-C--HHHHHHHHHHhCCCCccccH
Confidence 44444 4 78899999999999999764
No 63
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=29.59 E-value=30 Score=38.14 Aligned_cols=27 Identities=11% Similarity=0.373 Sum_probs=22.1
Q ss_pred hhhhhhccccHHHHHHhhhhcCCCCccccC
Q 036220 478 VWGYKYFKDNFNRLVKVKTKVDPDNFFRHE 507 (522)
Q Consensus 478 ~~~~~yyg~n~~RL~~IK~kyDP~~vF~~~ 507 (522)
.+.+.| + +++..++++++||+|+|.++
T Consensus 538 ~L~~~Y-P--~d~F~~~R~~lDP~g~f~N~ 564 (573)
T PLN02465 538 RLRKRF-P--VDAFNKARKELDPKGILSNN 564 (573)
T ss_pred HHHhhC-C--HHHHHHHHHHhCCCCccCCH
Confidence 455444 5 99999999999999999764
No 64
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=28.43 E-value=82 Score=28.20 Aligned_cols=30 Identities=17% Similarity=0.135 Sum_probs=26.2
Q ss_pred eEEEecCCHHHHHHHHHHHHHcCCeEEEEe
Q 036220 64 EFIFTPLYEAHVQAAVICCKELGVHLRVRS 93 (522)
Q Consensus 64 ~~vv~P~t~~dv~~~v~~a~~~~~~v~~~g 93 (522)
..|+.|.+.+|+..+++.|-+..-|+.+|=
T Consensus 125 ~~v~~Ps~~~~~~~ll~~a~~~~~P~~irl 154 (156)
T cd07033 125 MTVLRPADANETAAALEAALEYDGPVYIRL 154 (156)
T ss_pred CEEEecCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 368999999999999999998877888773
No 65
>KOG3282 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.02 E-value=92 Score=28.79 Aligned_cols=37 Identities=14% Similarity=0.135 Sum_probs=31.2
Q ss_pred ccCCCCCCCceEEEecCCHHHHHHHHHHHHHcCCeEEEE
Q 036220 54 RYLVPSMPKPEFIFTPLYEAHVQAAVICCKELGVHLRVR 92 (522)
Q Consensus 54 r~~~~~~~~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ 92 (522)
||.. ...|..||...+++++.++.+.|+..|++..+.
T Consensus 118 ~We~--~GQ~KIvvk~~~e~~l~~l~~~A~~~gl~t~~i 154 (190)
T KOG3282|consen 118 RWEN--CGQAKIVVKAESEEELMELQKDAKKLGLYTHLI 154 (190)
T ss_pred HHHH--cCCceEEEEcCCHHHHHHHHHHHHHcCCcEEEE
Confidence 5754 458999999999999999999999998875543
No 66
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=25.77 E-value=1.1e+02 Score=28.09 Aligned_cols=32 Identities=9% Similarity=0.018 Sum_probs=26.8
Q ss_pred eEEEecCCHHHHHHHHHHHHH--cCCeEEEEeCC
Q 036220 64 EFIFTPLYEAHVQAAVICCKE--LGVHLRVRSGG 95 (522)
Q Consensus 64 ~~vv~P~t~~dv~~~v~~a~~--~~~~v~~~ggG 95 (522)
..|+.|.+.+|+..+++.|.+ ..-|+.+|-.-
T Consensus 139 ~~v~~Psd~~e~~~~l~~a~~~~~~~P~~ir~~r 172 (178)
T PF02779_consen 139 MKVVVPSDPAEAKGLLRAAIRRESDGPVYIREPR 172 (178)
T ss_dssp EEEEE-SSHHHHHHHHHHHHHSSSSSEEEEEEES
T ss_pred cccccCCCHHHHHHHHHHHHHhCCCCeEEEEeeH
Confidence 578999999999999999999 56798888644
No 67
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=24.19 E-value=2.1e+02 Score=26.25 Aligned_cols=63 Identities=19% Similarity=0.186 Sum_probs=31.3
Q ss_pred eEEEecCCHH-HHHHHHHHHHHcCCeEEEEe-CCCCCCCCcccCCCCCCeEEEEcCCCCCeEEeCCCCEE
Q 036220 64 EFIFTPLYEA-HVQAAVICCKELGVHLRVRS-GGHDYEGLSYVSETETPFIIVDLAKLRSVKVDIDDNSA 131 (522)
Q Consensus 64 ~~vv~P~t~~-dv~~~v~~a~~~~~~v~~~g-gGh~~~~~~~~~d~~~~givIdl~~l~~i~~d~~~~~v 131 (522)
..++.|.+.+ |++++++.+.+.|++++..+ ....-....... -+-||++--+.+--+++...+
T Consensus 85 Vllfs~~~~~~e~~~~a~~L~~~gi~~v~Vs~~~~~~~~l~~~~-----~~~Idl~~~~~LvP~EdG~Ri 149 (172)
T PF10740_consen 85 VLLFSPFSTDEEAVALAKQLIEQGIPFVGVSPNKPDEEDLEDLA-----DVHIDLKLPKPLVPTEDGDRI 149 (172)
T ss_dssp EEEEES-S--HHHHHHHHHHHHHT--EEEEE-SS---TTGGG-S-----SS-EE----S-SEE-TTS-EE
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCCCCEEEEEecCCCCCchhhhh-----hheeecccCCCcccCCCCCEe
Confidence 3567777776 99999999999999999999 222222211111 256888877777666555443
No 68
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=23.74 E-value=47 Score=35.17 Aligned_cols=56 Identities=23% Similarity=0.371 Sum_probs=37.9
Q ss_pred eecCCCccchhHHhhcccccccCCCCCCCceEEEecCCH------HHHHHHHHHHHHcC-Ce--EEEEeCCC
Q 036220 34 FFSQNNSSFSSILESSAQNLRYLVPSMPKPEFIFTPLYE------AHVQAAVICCKELG-VH--LRVRSGGH 96 (522)
Q Consensus 34 v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~P~t~------~dv~~~v~~a~~~~-~~--v~~~ggGh 96 (522)
|..|......+.+.. -..||+ .-..+++|..+ ++|.++|+.|++.+ +- |..||||+
T Consensus 141 ITS~tgAairDIl~~--~~rR~P-----~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGS 205 (440)
T COG1570 141 ITSPTGAALRDILHT--LSRRFP-----SVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGS 205 (440)
T ss_pred EcCCchHHHHHHHHH--HHhhCC-----CCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcch
Confidence 445666677777542 355886 34566777654 79999999999986 33 55566663
No 69
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=23.41 E-value=52 Score=35.02 Aligned_cols=56 Identities=18% Similarity=0.214 Sum_probs=37.7
Q ss_pred eecCCCccchhHHhhcccccccCCCCCCCceEEEecCC------HHHHHHHHHHHHHc---CCeEEEEeCCC
Q 036220 34 FFSQNNSSFSSILESSAQNLRYLVPSMPKPEFIFTPLY------EAHVQAAVICCKEL---GVHLRVRSGGH 96 (522)
Q Consensus 34 v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~P~t------~~dv~~~v~~a~~~---~~~v~~~ggGh 96 (522)
|..|+...+.+.+.. -+.||+. -..+++|.. +.+|.++++.+.+. .+=|.+||||+
T Consensus 135 its~~~aa~~D~~~~--~~~r~p~-----~~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~RGGGs 199 (432)
T TIGR00237 135 ITSQTGAALADILHI--LKRRDPS-----LKVVIYPTLVQGEGAVQSIVESIELANTKNECDVLIVGRGGGS 199 (432)
T ss_pred EeCCccHHHHHHHHH--HHhhCCC-----ceEEEecccccCccHHHHHHHHHHHhhcCCCCCEEEEecCCCC
Confidence 556677788888653 3557853 345555554 47999999988763 44577777774
No 70
>PRK04322 peptidyl-tRNA hydrolase; Provisional
Probab=23.05 E-value=1.9e+02 Score=24.64 Aligned_cols=38 Identities=13% Similarity=0.145 Sum_probs=31.0
Q ss_pred CCCceEEEecCCHHHHHHHHHHHHHcCCeE-EEEeCCCC
Q 036220 60 MPKPEFIFTPLYEAHVQAAVICCKELGVHL-RVRSGGHD 97 (522)
Q Consensus 60 ~~~p~~vv~P~t~~dv~~~v~~a~~~~~~v-~~~ggGh~ 97 (522)
...+..|+.+.+++++.++.+.|++.|++. .++=.|+.
T Consensus 45 ~G~~Kvvlkv~~~~el~~l~~~a~~~~l~~~~v~DAG~T 83 (113)
T PRK04322 45 EGQKKVVLKVNSEEELLELKEKAERLGLPTALIRDAGLT 83 (113)
T ss_pred CCCcEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEeCCCc
Confidence 357889999999999999999999999874 44555554
No 71
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=21.26 E-value=82 Score=33.65 Aligned_cols=29 Identities=17% Similarity=0.234 Sum_probs=23.7
Q ss_pred cCCHHHHHHHHHHHHHcCCeEEEE--eCCCC
Q 036220 69 PLYEAHVQAAVICCKELGVHLRVR--SGGHD 97 (522)
Q Consensus 69 P~t~~dv~~~v~~a~~~~~~v~~~--ggGh~ 97 (522)
.-|.+||+++|++|+.+|++|.+- .-||.
T Consensus 246 vYT~eDv~evV~yarlRGIRVlpEfD~PgHt 276 (542)
T KOG2499|consen 246 VYTREDVSEVVEYARLRGIRVLPEFDTPGHT 276 (542)
T ss_pred eecHHHHHHHHHHHHhccceeeecccCCccc
Confidence 347899999999999999999875 45665
No 72
>cd02429 PTH2_like Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes. There is no functional information for this eukaryote-specific subgroup.
Probab=21.23 E-value=1.6e+02 Score=25.18 Aligned_cols=32 Identities=9% Similarity=0.020 Sum_probs=28.8
Q ss_pred CCceEEEecCCHHHHHHHHHHHHHcCCeEEEE
Q 036220 61 PKPEFIFTPLYEAHVQAAVICCKELGVHLRVR 92 (522)
Q Consensus 61 ~~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~~ 92 (522)
.....|+...+++|+.++-+.|++.|++..++
T Consensus 54 g~~KVVLkv~~e~eL~~L~~~a~~~gi~~~l~ 85 (116)
T cd02429 54 NMHKVVLEVPDEAALKNLSSKLTENSIKHKLW 85 (116)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHcCCCeEEE
Confidence 37899999999999999999999999887764
No 73
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=20.88 E-value=1.2e+02 Score=25.32 Aligned_cols=50 Identities=14% Similarity=0.173 Sum_probs=37.9
Q ss_pred eecCCCccchhHHhhcccccccCCCCCCCce-EEEecCCHHHHHHHHHHHHHcCCeEEEEeCC
Q 036220 34 FFSQNNSSFSSILESSAQNLRYLVPSMPKPE-FIFTPLYEAHVQAAVICCKELGVHLRVRSGG 95 (522)
Q Consensus 34 v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~-~vv~P~t~~dv~~~v~~a~~~~~~v~~~ggG 95 (522)
.+-|+-.+=+.++-. | .|. .+|.+.+-.|++.++..|.++|+||.+.+.-
T Consensus 39 ~IKPGIgEaTRvLLR-----R-------vP~~vLVr~~~~pd~~Hl~~LA~ekgVpVe~~~d~ 89 (100)
T PF15608_consen 39 LIKPGIGEATRVLLR-----R-------VPWKVLVRDPDDPDLAHLLLLAEEKGVPVEVYPDL 89 (100)
T ss_pred cccCChhHHHHHHHh-----c-------CCCEEEECCCCCccHHHHHHHHHHcCCcEEEeCCC
Confidence 677777776666421 3 444 4567777799999999999999999998754
No 74
>PF01981 PTH2: Peptidyl-tRNA hydrolase PTH2; InterPro: IPR002833 Peptidyl-tRNA hydrolases are enzymes that release tRNAs from peptidyl-tRNA during translation.; GO: 0004045 aminoacyl-tRNA hydrolase activity; PDB: 1RLK_A 1XTY_C 2ZV3_I 2D3K_A 1WN2_A 1Q7S_A 3ERJ_B 1RZW_A.
Probab=20.15 E-value=2.2e+02 Score=24.09 Aligned_cols=38 Identities=16% Similarity=0.190 Sum_probs=31.3
Q ss_pred CCceEEEecCCHHHHHHHHHHHHHcCCeE-EEEeCCCCC
Q 036220 61 PKPEFIFTPLYEAHVQAAVICCKELGVHL-RVRSGGHDY 98 (522)
Q Consensus 61 ~~p~~vv~P~t~~dv~~~v~~a~~~~~~v-~~~ggGh~~ 98 (522)
..+..|+...+++++.++.+.|++.|++. .++-.|+.-
T Consensus 49 g~~Kivlkv~~e~~L~~l~~~a~~~gl~~~~i~Dag~Te 87 (116)
T PF01981_consen 49 GQKKIVLKVPSEEELLELAKKAKEAGLPHYLIRDAGRTE 87 (116)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHTT-SEEEEEETSSSS
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHCCCCEEEEEECCCCc
Confidence 47889999999999999999999999985 455677663
Done!