BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036221
(159 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CNW|A Chain A, Three-Dimensional Structure Of The Protein Xoxi (Q81ay6)
From Bacillus Cereus. Northeast Structural Genomics
Consortium Target Bcr196.
pdb|3CNW|B Chain B, Three-Dimensional Structure Of The Protein Xoxi (Q81ay6)
From Bacillus Cereus. Northeast Structural Genomics
Consortium Target Bcr196
Length = 148
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 59/134 (44%), Gaps = 14/134 (10%)
Query: 24 KVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIRLVSGFMFPQENGERSWIKERLISM 83
+VW ++ LP+W+P + G G +R ++ N + I ERL
Sbjct: 18 QVWQLIGGFNSLPDWLPYIPSSKLTEG-----GRVRHLA-------NPDGDTIIERLEVF 65
Query: 84 DSSSHSYDYKMEASNVGLDGSVNSLKLIDYGDDST-LVSWSFAIDPVEGASEDSIIDYLG 142
+ Y Y + + + ++++++ + + +T LV WS PVE + E++I + G
Sbjct: 66 NDKERYYTYSIXNAPFPVTNYLSTIQVKEGTESNTSLVEWSGTFTPVEVSDEEAINLFHG 125
Query: 143 FLYKSCINRIDSAI 156
+Y + + A
Sbjct: 126 -IYSDGLKALQQAF 138
>pdb|2LPX|A Chain A, Solution Structure Of Strawberry Allergen Fra A 1e
Length = 170
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 51/105 (48%), Gaps = 12/105 (11%)
Query: 19 DAPINKVWT--IVSQTKKLPEWMPMVERCTDLAGDEGVPGYIRLVSGFMFPQENGERSWI 76
D P K++ ++ +P+ P +C ++ +G PG I+ ++ E ++
Sbjct: 13 DIPAPKLFKAFVLDADNLIPKIAPQAVKCAEILEGDGGPGTIKKITF----GEGSHYGYV 68
Query: 77 KERLISMDSSSHSYDYKMEASNVGLDGSVNSLKLIDYGDDSTLVS 121
K ++ S+D +H+Y Y + + D +++ IDY ++ LVS
Sbjct: 69 KHKIHSIDKVNHTYSYSL----IEGDALSENIEKIDY--ETKLVS 107
>pdb|3OQU|A Chain A, Crystal Structure Of Native Abscisic Acid Receptor Pyl9
With Aba
pdb|3OQU|B Chain B, Crystal Structure Of Native Abscisic Acid Receptor Pyl9
With Aba
Length = 205
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 9/132 (6%)
Query: 18 VDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIRLVSGFMFPQENGERSWIK 77
+ AP++ VW++V + + ++ P V RCT + GD + G +R V+ + +
Sbjct: 60 IKAPLHLVWSLVRRFDQPQKYKPFVSRCT-VIGDPEI-GSLREVN----VKSGLPATTST 113
Query: 78 ERLISMDSSSHSYDYKMEASNVGLDGSVNSLKL---IDYGDDSTLVSWSFAIDPVEGASE 134
ERL +D H K+ + L + L + I G T+V SF +D +G ++
Sbjct: 114 ERLELLDDEEHILGIKIIGGDHRLKNYSSILTVHPEIIEGRAGTMVIESFVVDVPQGNTK 173
Query: 135 DSIIDYLGFLYK 146
D ++ L +
Sbjct: 174 DETCYFVEALIR 185
>pdb|3RT0|C Chain C, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of
Abscisic Acid (Aba)
pdb|3RT0|D Chain D, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of
Abscisic Acid (Aba)
Length = 183
Score = 33.9 bits (76), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 18 VDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIR---LVSGFMFPQENGERS 74
+ AP++ VW+IV + + ++ P + RC + G + G +R L SG +
Sbjct: 35 IKAPLHLVWSIVRRFDEPQKYKPFISRCV-VQGKKLEVGSVREVDLKSGLPATKST---- 89
Query: 75 WIKERLISMDSSSHSYDYKMEASNVGLDGSVNSLKL----IDYGDDSTLVSWSFAIDPVE 130
E L +D + H ++ + L +++ L ID G TL SF +D E
Sbjct: 90 ---EVLEILDDNEHILGIRIVGGDHRLKNYSSTISLHSETID-GKTGTLAIESFVVDVPE 145
Query: 131 GASEDSIIDYLGFLYKSCINRIDSAIQKV 159
G +++ ++ L +S +N + +++
Sbjct: 146 GNTKEETCFFVEALIQSNLNSLADVTERL 174
>pdb|3NMP|A Chain A, Crystal Structure Of The Abscisic Receptor Pyl2 Mutant
A93f In Complex With Pyrabactin
pdb|3NMP|B Chain B, Crystal Structure Of The Abscisic Receptor Pyl2 Mutant
A93f In Complex With Pyrabactin
pdb|3NMP|C Chain C, Crystal Structure Of The Abscisic Receptor Pyl2 Mutant
A93f In Complex With Pyrabactin
pdb|3NMT|A Chain A, Crystal Structure Of Pyrabactin Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Hab1
pdb|3NMV|A Chain A, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Abi2
Length = 178
Score = 33.9 bits (76), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 16/146 (10%)
Query: 18 VDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIR---LVSGFMFPQENGERS 74
+ AP + VW ++ + + V+RC ++GD V G +R ++SG F S
Sbjct: 32 IHAPASVVWPLIRRFDNPERYKHFVKRCRLISGDGDV-GSVREVTVISGLPF-------S 83
Query: 75 WIKERLISMDSSSHSYDYKMEASNVGLDG-----SVNSLKLIDYGDDSTLVSWSFAIDPV 129
ERL +D +++ L SVN D G T+V S+ +D
Sbjct: 84 TSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSVNEFLNQDSGKVYTVVLESYTVDIP 143
Query: 130 EGASEDSIIDYLGFLYKSCINRIDSA 155
EG +E+ ++ + K + ++ A
Sbjct: 144 EGNTEEDTKMFVDTVVKLNLQKLGVA 169
>pdb|3F08|A Chain A, Crystal Structure Of The Putative Uncharacterized Protein
Q6hg14 From Bacilllus Thuringiensis. Northeast
Structural Genomics Consortium Target Bur153.
pdb|3F08|B Chain B, Crystal Structure Of The Putative Uncharacterized Protein
Q6hg14 From Bacilllus Thuringiensis. Northeast
Structural Genomics Consortium Target Bur153
Length = 146
Score = 33.1 bits (74), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 51/115 (44%), Gaps = 13/115 (11%)
Query: 24 KVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIRLVSGFMFPQENGERSWIKERLISM 83
+VW ++ LP+W+P + G G +R ++ N + I ERL
Sbjct: 16 QVWQLIGGFNSLPDWLPYIPSSKLTEG-----GRVRHLA-------NPDGETIIERLEVF 63
Query: 84 DSSSHSYDYKMEASNVGLDGSVNSLKLIDYGDDST-LVSWSFAIDPVEGASEDSI 137
+ Y Y + + + ++++++ + + +T LV WS PV + E++I
Sbjct: 64 NDKERYYTYSIXNAPFPVTNYLSTIQVKEGTESNTSLVEWSGTFTPVAVSDEEAI 118
>pdb|2M47|A Chain A, Solution Nmr Structure Of The Polyketide_cyc-like Protein
Cgl2372 From Corynebacterium Glutamicum, Northeast
Structural Genomics Consortium Target Cgr160
Length = 163
Score = 32.7 bits (73), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 18 VDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIRLVSGFMFPQEN--GERSW 75
+ APIN+V+ +VS + EW P+ E+C DEG V G F N ER+W
Sbjct: 13 IAAPINQVYALVSDITRTGEWSPVCEKCW-WDEDEGP------VVGAHFTGRNVTPERTW 65
Query: 76 IKERLISMDSSSHSYDYKMEASNVGLDGSVNSLKLIDYGDDSTLVSWSFAIDP 128
+ + + + + + DG+V + ++ ++ T+++ S+ P
Sbjct: 66 ETRSEVIVAEPNRCFGWSV------TDGNVKWIYSMEPLEEGTVLTESWEFTP 112
>pdb|3UQH|A Chain A, Crystal Strcuture Of Aba Receptor Pyl10 (Apo)
pdb|3UQH|B Chain B, Crystal Strcuture Of Aba Receptor Pyl10 (Apo)
pdb|3R6P|A Chain A, Crystal Structure Of Abscisic Acid-Bound Pyl10
Length = 191
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 66/149 (44%), Gaps = 16/149 (10%)
Query: 18 VDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIR---LVSGFMFPQENGERS 74
+ AP++ VW+IV + + ++ P + RC + G + G +R L SG +
Sbjct: 35 IKAPLHLVWSIVRRFDEPQKYKPFISRCV-VQGKKLEVGSVREVDLKSGLPATKST---- 89
Query: 75 WIKERLISMDSSSHSYDYKMEASNVGLDGSVNSLKL----IDYGDDSTLVSWSFAIDPVE 130
E L +D + H ++ + L +++ L ID G TL SF +D E
Sbjct: 90 ---EVLEILDDNEHILGIRIVGGDHRLKNYSSTISLHSETID-GKTGTLAIESFVVDVPE 145
Query: 131 GASEDSIIDYLGFLYKSCINRIDSAIQKV 159
G +++ ++ L + +N + +++
Sbjct: 146 GNTKEETCFFVEALIQCNLNSLADVTERL 174
>pdb|3RT2|A Chain A, Crystal Structure Of Apo-Pyl10
Length = 183
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 66/149 (44%), Gaps = 16/149 (10%)
Query: 18 VDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIR---LVSGFMFPQENGERS 74
+ AP++ VW+IV + + ++ P + RC + G + G +R L SG +
Sbjct: 35 IKAPLHLVWSIVRRFDEPQKYKPFISRCV-VQGKKLEVGSVREVDLKSGLPATKST---- 89
Query: 75 WIKERLISMDSSSHSYDYKMEASNVGLDGSVNSLKL----IDYGDDSTLVSWSFAIDPVE 130
E L +D + H ++ + L +++ L ID G TL SF +D E
Sbjct: 90 ---EVLEILDDNEHILGIRIVGGDHRLKNYSSTISLHSETID-GKTGTLAIESFVVDVPE 145
Query: 131 GASEDSIIDYLGFLYKSCINRIDSAIQKV 159
G +++ ++ L + +N + +++
Sbjct: 146 GNTKEETCFFVEALIQCNLNSLADVTERL 174
>pdb|2ISA|A Chain A, Crystal Structure Of Vibrio Salmonicida Catalase
pdb|2ISA|B Chain B, Crystal Structure Of Vibrio Salmonicida Catalase
pdb|2ISA|C Chain C, Crystal Structure Of Vibrio Salmonicida Catalase
pdb|2ISA|D Chain D, Crystal Structure Of Vibrio Salmonicida Catalase
pdb|2ISA|E Chain E, Crystal Structure Of Vibrio Salmonicida Catalase
pdb|2ISA|F Chain F, Crystal Structure Of Vibrio Salmonicida Catalase
pdb|2ISA|G Chain G, Crystal Structure Of Vibrio Salmonicida Catalase
pdb|2ISA|H Chain H, Crystal Structure Of Vibrio Salmonicida Catalase
Length = 483
Score = 32.0 bits (71), Expect = 0.15, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 11/98 (11%)
Query: 35 LPEWMPMVERCTDLAGDEGVPGYIRLVSGF-----MFPQENGERSWIKERLISMDSSSHS 89
LPE + V T + D G+P R + GF F + ER W+K +S +
Sbjct: 167 LPEALHQV---TIVMSDRGIPATYRHMHGFGSHTFSFINSDNERYWVKFHFVSQQGIKNL 223
Query: 90 YDYKMEASN-VGLDGSVNSLKLIDYGDDSTLVSWSFAI 126
D EA VG D + L+D D+ W+ +
Sbjct: 224 SD--AEAGELVGNDRESHQRDLLDSIDNQDFPKWTLKV 259
>pdb|3UJL|A Chain A, Crystal Structure Of Abscisic Acid Bound Pyl2 In Complex
With Type 2c Protein Phosphatase Abi2
Length = 177
Score = 30.8 bits (68), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 61/146 (41%), Gaps = 16/146 (10%)
Query: 18 VDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIR---LVSGFMFPQENGERS 74
+ AP + VW ++ + + V+RC ++GD V G +R ++SG S
Sbjct: 32 IHAPASVVWPLIRRFDNPERYKHFVKRCRLISGDGDV-GSVREVTVISGL-------PAS 83
Query: 75 WIKERLISMDSSSHSYDYKMEASNVGLDG-----SVNSLKLIDYGDDSTLVSWSFAIDPV 129
ERL +D +++ L SVN D G T+V S+ +D
Sbjct: 84 TSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSVNEFLNQDSGKVYTVVLESYTVDIP 143
Query: 130 EGASEDSIIDYLGFLYKSCINRIDSA 155
EG +E+ ++ + K + ++ A
Sbjct: 144 EGNTEEDTKMFVDTVVKLNLQKLGVA 169
>pdb|3NMH|A Chain A, Crystal Structure Of The Abscisic Receptor Pyl2 In Complex
With Pyrabactin
pdb|3NMH|B Chain B, Crystal Structure Of The Abscisic Receptor Pyl2 In Complex
With Pyrabactin
pdb|3NMH|C Chain C, Crystal Structure Of The Abscisic Receptor Pyl2 In Complex
With Pyrabactin
Length = 178
Score = 30.8 bits (68), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 61/146 (41%), Gaps = 16/146 (10%)
Query: 18 VDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIR---LVSGFMFPQENGERS 74
+ AP + VW ++ + + V+RC ++GD V G +R ++SG S
Sbjct: 32 IHAPASVVWPLIRRFDNPERYKHFVKRCRLISGDGDV-GSVREVTVISGL-------PAS 83
Query: 75 WIKERLISMDSSSHSYDYKMEASNVGLDG-----SVNSLKLIDYGDDSTLVSWSFAIDPV 129
ERL +D +++ L SVN D G T+V S+ +D
Sbjct: 84 TSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSVNEFLNQDSGKVYTVVLESYTVDIP 143
Query: 130 EGASEDSIIDYLGFLYKSCINRIDSA 155
EG +E+ ++ + K + ++ A
Sbjct: 144 EGNTEEDTKMFVDTVVKLNLQKLGVA 169
>pdb|3QRZ|A Chain A, Crystal Structure Of Native Abscisic Acid Receptor Pyl5 At
2.6 Angstrom
pdb|3QRZ|B Chain B, Crystal Structure Of Native Abscisic Acid Receptor Pyl5 At
2.6 Angstrom
pdb|3QRZ|C Chain C, Crystal Structure Of Native Abscisic Acid Receptor Pyl5 At
2.6 Angstrom
Length = 223
Score = 30.8 bits (68), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 14/139 (10%)
Query: 13 SVGGIVDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIR---LVSGFMFPQE 69
SV ++ AP VW +V + + + +C + GD G +R +VSG P
Sbjct: 81 SVVQMIHAPPESVWALVRRFDNPKVYKNFIRQCRIVQGDGLHVGDLREVMVVSG--LPAV 138
Query: 70 NGERSWIKERLISMDSSSHSYDYKMEASNVGLDG--SVNSLKLIDYGDDSTLVSWSFAID 127
+ ERL +D H + + + L SV +L D D+ T+V S+ +D
Sbjct: 139 SS-----TERLEILDEERHVISFSVVGGDHRLKNYRSVTTLHASD--DEGTVVVESYIVD 191
Query: 128 PVEGASEDSIIDYLGFLYK 146
G +E+ + ++ + +
Sbjct: 192 VPPGNTEEETLSFVDTIVR 210
>pdb|3NJ1|A Chain A, X-Ray Crystal Structure Of The Pyl2(V114i)-Pyrabactin A
Complex
Length = 193
Score = 30.8 bits (68), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 61/146 (41%), Gaps = 16/146 (10%)
Query: 18 VDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIR---LVSGFMFPQENGERS 74
+ AP + VW ++ + + V+RC ++GD V G +R ++SG S
Sbjct: 46 IHAPASVVWPLIRRFDNPERYKHFVKRCRLISGDGDV-GSVREVTVISGL-------PAS 97
Query: 75 WIKERLISMDSSSHSYDYKMEASNVGLDG-----SVNSLKLIDYGDDSTLVSWSFAIDPV 129
ERL +D +++ L SVN D G T+V S+ +D
Sbjct: 98 TSTERLEFVDDDHRVLSFRIVGGEHRLKNYKSVTSVNEFLNQDSGKVYTVVLESYTVDIP 157
Query: 130 EGASEDSIIDYLGFLYKSCINRIDSA 155
EG +E+ ++ + K + ++ A
Sbjct: 158 EGNTEEDTKMFVDTVVKLNLQKLGVA 183
>pdb|3KAZ|A Chain A, Crystal Structure Of Abscisic Acid Receptor Pyl2
pdb|3KAZ|B Chain B, Crystal Structure Of Abscisic Acid Receptor Pyl2
pdb|3KAZ|C Chain C, Crystal Structure Of Abscisic Acid Receptor Pyl2
pdb|3KB0|A Chain A, Crystal Structure Of Abscisic Acid-Bound Pyl2
pdb|3KB3|A Chain A, Crystal Structure Of Abscisic Acid-Bound Pyl2 In Complex
With Hab1
Length = 176
Score = 30.8 bits (68), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 61/146 (41%), Gaps = 16/146 (10%)
Query: 18 VDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIR---LVSGFMFPQENGERS 74
+ AP + VW ++ + + V+RC ++GD V G +R ++SG S
Sbjct: 31 IHAPASVVWPLIRRFDNPERYKHFVKRCRLISGDGDV-GSVREVTVISGL-------PAS 82
Query: 75 WIKERLISMDSSSHSYDYKMEASNVGLDG-----SVNSLKLIDYGDDSTLVSWSFAIDPV 129
ERL +D +++ L SVN D G T+V S+ +D
Sbjct: 83 TSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSVNEFLNQDSGKVYTVVLESYTVDIP 142
Query: 130 EGASEDSIIDYLGFLYKSCINRIDSA 155
EG +E+ ++ + K + ++ A
Sbjct: 143 EGNTEEDTKMFVDTVVKLNLQKLGVA 168
>pdb|3NJ0|A Chain A, X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Complex
pdb|3NJ0|B Chain B, X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Complex
pdb|3NJ0|C Chain C, X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Complex
Length = 193
Score = 30.4 bits (67), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 61/146 (41%), Gaps = 16/146 (10%)
Query: 18 VDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIR---LVSGFMFPQENGERS 74
+ AP + VW ++ + + V+RC ++GD V G +R ++SG S
Sbjct: 46 IHAPASVVWPLIRRFDNPERYKHFVKRCRLISGDGDV-GSVREVTVISGL-------PAS 97
Query: 75 WIKERLISMDSSSHSYDYKMEASNVGLDG-----SVNSLKLIDYGDDSTLVSWSFAIDPV 129
ERL +D +++ L SVN D G T+V S+ +D
Sbjct: 98 TSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSVNEFLNQDSGKVYTVVLESYTVDIP 157
Query: 130 EGASEDSIIDYLGFLYKSCINRIDSA 155
EG +E+ ++ + K + ++ A
Sbjct: 158 EGNTEEDTKMFVDTVVKLNLQKLGVA 183
>pdb|3KDH|A Chain A, Structure Of Ligand-Free Pyl2
pdb|3KDH|B Chain B, Structure Of Ligand-Free Pyl2
pdb|3KDH|C Chain C, Structure Of Ligand-Free Pyl2
pdb|3KDI|A Chain A, Structure Of (+)-Aba Bound Pyl2
pdb|3NR4|A Chain A, Pyrabactin-Bound Pyl2
pdb|3NR4|B Chain B, Pyrabactin-Bound Pyl2
pdb|3NR4|C Chain C, Pyrabactin-Bound Pyl2
pdb|3NS2|A Chain A, High-Resolution Structure Of Pyrabactin-Bound Pyl2
pdb|3NS2|B Chain B, High-Resolution Structure Of Pyrabactin-Bound Pyl2
pdb|3NS2|C Chain C, High-Resolution Structure Of Pyrabactin-Bound Pyl2
pdb|3KL1|A Chain A, Crystal Structure Of Abscisic Acid Receptor Pyl2 At 1.55 A
pdb|3KL1|B Chain B, Crystal Structure Of Abscisic Acid Receptor Pyl2 At 1.55 A
Length = 190
Score = 30.4 bits (67), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 61/146 (41%), Gaps = 16/146 (10%)
Query: 18 VDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIR---LVSGFMFPQENGERS 74
+ AP + VW ++ + + V+RC ++GD V G +R ++SG S
Sbjct: 43 IHAPASVVWPLIRRFDNPERYKHFVKRCRLISGDGDV-GSVREVTVISGL-------PAS 94
Query: 75 WIKERLISMDSSSHSYDYKMEASNVGLDG-----SVNSLKLIDYGDDSTLVSWSFAIDPV 129
ERL +D +++ L SVN D G T+V S+ +D
Sbjct: 95 TSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSVNEFLNQDSGKVYTVVLESYTVDIP 154
Query: 130 EGASEDSIIDYLGFLYKSCINRIDSA 155
EG +E+ ++ + K + ++ A
Sbjct: 155 EGNTEEDTKMFVDTVVKLNLQKLGVA 180
>pdb|2LE1|A Chain A, Solution Nmr Structure Of Tfu_2981 From Thermobifida
Fusca, Northeast Structural Genomics Consortium Target
Tfr85a
Length = 151
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 38/110 (34%), Gaps = 7/110 (6%)
Query: 18 VDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIRLVSGFMFPQENGERSWIK 77
V AP VWT+V + W P V T PG R+ G +
Sbjct: 10 VAAPAADVWTLVGDFSAIHRWHPQVSAPTLRGASPHTPGAERVFGA-------GTEEELV 62
Query: 78 ERLISMDSSSHSYDYKMEASNVGLDGSVNSLKLIDYGDDSTLVSWSFAID 127
ERL+ D S+ Y M + L+++ D V W+ D
Sbjct: 63 ERLVERDESARRLVYTMPDPPFPITNHRAVLEVVPRDDRHCTVVWTAMFD 112
>pdb|2NN5|A Chain A, Structure Of Conserved Protein Of Unknown Function
Ef2215 From Enterococcus Faecalis
Length = 184
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 7 QGKWRGSVGGIVDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIRLV 61
Q + G+ I +P +W +++T KL +W P +E G+ GV G+ R +
Sbjct: 34 QTIYFGTERAISASP-QTIWRYLTETDKLKQWFPELE-----IGELGVNGFWRFI 82
>pdb|1UUQ|A Chain A, Exo-mannosidase From Cellvibrio Mixtus
pdb|1UZ4|A Chain A, Common Inhibition Of Beta-Glucosidase And Beta-Mannosidase
By Isofagomine Lactam Reflects Different Conformational
Intineraries For Glucoside And Mannoside Hydrolysis
Length = 440
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 105 VNSLKLIDYGDDSTLVSWSFAIDPVEGASEDS 136
VNS+ Y DD+T++SW A +P G S+ +
Sbjct: 193 VNSINGKAYVDDATIMSWQLANEPRPGNSQTT 224
>pdb|1E09|A Chain A, Solution Structure Of The Major Cherry Allergen Pru Av 1
Length = 159
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/60 (21%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 35 LPEWMPMVERCTDLAGDEGVPGYIRLVSGFMFPQENGERSWIKERLISMDSSSHSYDYKM 94
+P+ P + +++ +G PG I+ ++ E + ++K ++ S+D ++SY Y +
Sbjct: 30 VPKIAPQAIKHSEILEGDGGPGTIKKITF----GEGSQYGYVKHKIDSIDKENYSYSYTL 85
>pdb|1H2O|A Chain A, Solution Structure Of The Major Cherry Allergen Pru Av 1
Mutant E45w
Length = 159
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/60 (21%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 35 LPEWMPMVERCTDLAGDEGVPGYIRLVSGFMFPQENGERSWIKERLISMDSSSHSYDYKM 94
+P+ P + +++ +G PG I+ ++ E + ++K ++ S+D ++SY Y +
Sbjct: 30 VPKIAPQAIKHSEILWGDGGPGTIKKITF----GEGSQYGYVKHKIDSIDKENYSYSYTL 85
>pdb|4AQ7|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4AQ7|D Chain D, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4ARC|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucine In The Editing Conformation
pdb|4ARI|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|4AS1|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|3ZGZ|A Chain A, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
pdb|3ZGZ|D Chain D, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
Length = 880
Score = 26.2 bits (56), Expect = 9.3, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 20/83 (24%)
Query: 60 LVSGFMFPQENGERSWI-----------KERLI-SMDSSSHSYDY----KMEAS-NVGLD 102
L F + ENGER+W+ K R++ + D++ H Y KM S N G+D
Sbjct: 590 LADAFYYVGENGERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMSKMSKSKNNGID 649
Query: 103 GSVNSLKLIDYGDDSTLVSWSFA 125
V + YG D+ + FA
Sbjct: 650 PQVMVER---YGADTVRLFMMFA 669
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,141,693
Number of Sequences: 62578
Number of extensions: 206482
Number of successful extensions: 644
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 633
Number of HSP's gapped (non-prelim): 30
length of query: 159
length of database: 14,973,337
effective HSP length: 91
effective length of query: 68
effective length of database: 9,278,739
effective search space: 630954252
effective search space used: 630954252
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)