Query 036221
Match_columns 159
No_of_seqs 106 out of 1023
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 10:38:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036221.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036221hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07816 Bet_v1-like Ligand-bin 99.9 4.6E-22 1E-26 140.4 19.0 114 13-131 4-122 (148)
2 cd07821 PYR_PYL_RCAR_like Pyra 99.9 4.8E-21 1E-25 132.3 17.6 137 13-157 4-140 (140)
3 PF10604 Polyketide_cyc2: Poly 99.9 1.2E-19 2.7E-24 125.2 18.8 137 9-157 1-139 (139)
4 cd08862 SRPBCC_Smu440-like Lig 99.8 3.2E-19 7E-24 123.3 17.2 136 11-158 2-138 (138)
5 cd08866 SRPBCC_11 Ligand-bindi 99.8 2.6E-19 5.6E-24 125.0 16.5 142 13-158 2-144 (144)
6 cd08865 SRPBCC_10 Ligand-bindi 99.8 2.6E-19 5.6E-24 123.4 16.3 137 13-158 2-140 (140)
7 cd07818 SRPBCC_1 Ligand-bindin 99.8 1.6E-18 3.4E-23 121.9 16.7 140 10-158 2-150 (150)
8 cd07822 SRPBCC_4 Ligand-bindin 99.8 7.3E-18 1.6E-22 116.4 16.7 138 13-157 3-141 (141)
9 cd08861 OtcD1_ARO-CYC_like N-t 99.8 6.8E-18 1.5E-22 117.5 15.1 139 13-158 2-142 (142)
10 cd07817 SRPBCC_8 Ligand-bindin 99.8 1.2E-17 2.6E-22 115.5 15.8 132 13-157 3-138 (139)
11 cd07813 COQ10p_like Coenzyme Q 99.8 5.7E-18 1.2E-22 117.7 13.3 137 13-159 2-138 (138)
12 cd08860 TcmN_ARO-CYC_like N-te 99.8 3.3E-17 7.3E-22 115.4 16.0 140 12-158 3-144 (146)
13 cd07819 SRPBCC_2 Ligand-bindin 99.8 9E-17 1.9E-21 111.1 17.3 135 12-156 4-140 (140)
14 cd07825 SRPBCC_7 Ligand-bindin 99.8 4.6E-17 9.9E-22 113.6 13.8 140 13-157 3-144 (144)
15 cd07814 SRPBCC_CalC_Aha1-like 99.7 3.8E-16 8.2E-21 107.8 12.7 136 13-158 3-139 (139)
16 cd07824 SRPBCC_6 Ligand-bindin 99.7 2.2E-15 4.8E-20 105.8 16.6 134 13-155 4-145 (146)
17 PF00407 Bet_v_1: Pathogenesis 99.7 5.3E-15 1.1E-19 104.6 16.2 138 13-156 7-148 (151)
18 cd07812 SRPBCC START/RHO_alpha 99.7 8.3E-15 1.8E-19 99.1 16.6 136 13-155 2-140 (141)
19 cd05018 CoxG Carbon monoxide d 99.7 2.9E-15 6.3E-20 104.0 13.8 137 13-157 4-144 (144)
20 cd07820 SRPBCC_3 Ligand-bindin 99.6 1.4E-14 3E-19 100.7 14.4 112 13-132 2-115 (137)
21 PRK10724 hypothetical protein; 99.6 2.7E-14 5.9E-19 101.7 12.9 138 11-158 16-153 (158)
22 cd07823 SRPBCC_5 Ligand-bindin 99.6 1.6E-13 3.5E-18 96.3 12.8 138 14-158 3-146 (146)
23 PF03364 Polyketide_cyc: Polyk 99.5 3.4E-13 7.4E-18 92.4 11.6 126 18-153 1-130 (130)
24 cd08898 SRPBCC_CalC_Aha1-like_ 99.4 3.3E-11 7.2E-16 83.8 14.2 134 13-158 4-145 (145)
25 cd08893 SRPBCC_CalC_Aha1-like_ 99.4 3.4E-11 7.3E-16 82.8 13.4 130 13-158 3-136 (136)
26 cd08899 SRPBCC_CalC_Aha1-like_ 99.4 3.2E-11 6.9E-16 85.8 12.8 130 7-158 8-137 (157)
27 COG5637 Predicted integral mem 99.3 6.3E-11 1.4E-15 84.2 12.0 136 11-158 71-210 (217)
28 cd08894 SRPBCC_CalC_Aha1-like_ 99.2 4.5E-10 9.7E-15 78.1 13.6 133 13-158 3-139 (139)
29 cd08876 START_1 Uncharacterize 99.2 4.1E-09 8.9E-14 77.2 17.4 144 11-157 42-195 (195)
30 COG3427 Carbon monoxide dehydr 99.2 1E-09 2.3E-14 76.3 12.3 134 15-156 6-143 (146)
31 PF06240 COXG: Carbon monoxide 99.2 1.9E-09 4.1E-14 75.3 13.4 134 15-156 2-139 (140)
32 cd08895 SRPBCC_CalC_Aha1-like_ 99.2 5.7E-09 1.2E-13 73.1 16.0 134 13-158 3-146 (146)
33 cd07826 SRPBCC_CalC_Aha1-like_ 99.1 3.7E-09 7.9E-14 73.9 13.4 137 13-157 3-141 (142)
34 cd08896 SRPBCC_CalC_Aha1-like_ 99.1 4.3E-09 9.4E-14 73.7 13.2 136 13-158 3-146 (146)
35 COG2867 Oligoketide cyclase/li 99.1 9.4E-10 2E-14 76.1 9.5 137 13-158 5-141 (146)
36 cd08897 SRPBCC_CalC_Aha1-like_ 99.1 5.7E-09 1.2E-13 72.0 12.3 127 13-158 3-133 (133)
37 cd08900 SRPBCC_CalC_Aha1-like_ 99.1 2.2E-08 4.7E-13 69.9 15.1 134 13-158 3-143 (143)
38 cd08901 SRPBCC_CalC_Aha1-like_ 99.0 9E-09 1.9E-13 71.3 12.5 127 13-158 3-132 (136)
39 cd08891 SRPBCC_CalC Ligand-bin 99.0 3.2E-08 6.9E-13 69.6 14.8 133 13-158 3-149 (149)
40 PF08327 AHSA1: Activator of H 99.0 7E-09 1.5E-13 70.1 10.3 122 19-157 1-124 (124)
41 cd08892 SRPBCC_Aha1 Putative h 98.8 3.7E-07 8E-12 62.5 14.1 121 13-157 3-125 (126)
42 COG3832 Uncharacterized conser 98.7 8.6E-07 1.9E-11 62.5 12.7 136 13-158 11-149 (149)
43 PTZ00220 Activator of HSP-90 A 98.6 7.4E-07 1.6E-11 61.6 10.7 123 18-157 1-127 (132)
44 cd08874 START_STARD9-like C-te 98.6 1.1E-05 2.5E-10 59.8 16.4 142 16-157 51-204 (205)
45 cd08905 START_STARD1-like Chol 98.4 4.9E-05 1.1E-09 56.6 15.3 143 14-158 53-208 (209)
46 cd08877 START_2 Uncharacterize 98.4 2.8E-05 6E-10 58.0 14.0 142 13-159 49-215 (215)
47 COG4276 Uncharacterized conser 98.3 0.0001 2.2E-09 50.4 14.7 113 14-131 6-120 (153)
48 cd08906 START_STARD3-like Chol 98.3 0.00024 5.3E-09 52.8 17.0 141 14-158 53-208 (209)
49 COG4891 Uncharacterized conser 98.3 8.8E-06 1.9E-10 52.0 7.6 86 72-159 7-93 (93)
50 cd08871 START_STARD10-like Lip 98.2 0.0002 4.3E-09 53.6 16.3 140 16-158 53-202 (222)
51 cd00177 START Lipid-binding ST 98.1 0.00078 1.7E-08 48.4 17.1 142 11-154 40-190 (193)
52 cd08873 START_STARD14_15-like 98.1 0.00042 9E-09 52.4 15.1 110 16-128 83-204 (235)
53 cd08870 START_STARD2_7-like Li 98.1 0.00083 1.8E-08 49.9 16.6 141 15-158 55-208 (209)
54 cd08868 START_STARD1_3_like Ch 98.1 0.00072 1.6E-08 50.1 15.6 142 14-158 52-207 (208)
55 cd08903 START_STARD5-like Lipi 98.0 0.0011 2.4E-08 49.3 16.5 143 14-158 50-207 (208)
56 cd08869 START_RhoGAP C-termina 98.0 0.00089 1.9E-08 49.3 15.2 139 13-156 47-194 (197)
57 cd08911 START_STARD7-like Lipi 98.0 0.0017 3.6E-08 48.2 16.3 140 16-158 51-206 (207)
58 cd08908 START_STARD12-like C-t 97.9 0.0018 4E-08 48.0 15.6 139 14-157 56-202 (204)
59 cd08867 START_STARD4_5_6-like 97.9 0.0035 7.6E-08 46.3 16.5 143 13-156 49-205 (206)
60 smart00234 START in StAR and p 97.8 0.0046 1E-07 45.3 16.3 142 14-157 49-201 (206)
61 PF10698 DUF2505: Protein of u 97.8 0.0011 2.3E-08 47.2 12.4 141 13-157 2-156 (159)
62 cd08910 START_STARD2-like Lipi 97.6 0.005 1.1E-07 45.7 13.8 139 15-158 54-206 (207)
63 cd08913 START_STARD14-like Lip 97.6 0.0041 9E-08 47.3 13.4 110 16-128 87-209 (240)
64 cd08914 START_STARD15-like Lip 97.5 0.0071 1.5E-07 45.8 13.3 107 16-128 84-205 (236)
65 cd08904 START_STARD6-like Lipi 97.4 0.029 6.2E-07 41.7 15.5 140 14-156 50-203 (204)
66 PF11687 DUF3284: Domain of un 97.3 0.019 4.1E-07 39.0 12.6 97 14-130 3-104 (120)
67 KOG3177 Oligoketide cyclase/li 97.3 0.0045 9.8E-08 45.5 9.5 132 17-157 75-209 (227)
68 cd08902 START_STARD4-like Lipi 97.1 0.06 1.3E-06 39.8 15.8 138 16-156 53-201 (202)
69 PF01852 START: START domain; 97.0 0.058 1.3E-06 39.4 13.5 143 10-158 46-202 (206)
70 cd08909 START_STARD13-like C-t 96.9 0.1 2.2E-06 38.7 15.2 140 9-157 53-203 (205)
71 PF08982 DUF1857: Domain of un 96.4 0.17 3.8E-06 35.6 11.7 90 22-129 20-110 (149)
72 cd08872 START_STARD11-like Cer 96.0 0.46 9.9E-06 36.0 14.1 141 13-157 55-225 (235)
73 cd08863 SRPBCC_DUF1857 DUF1857 95.6 0.48 1E-05 33.1 15.0 91 22-129 19-110 (141)
74 cd08907 START_STARD8-like C-te 80.8 21 0.00045 26.6 14.0 139 9-156 53-202 (205)
75 PLN00188 enhanced disease resi 79.0 46 0.001 29.5 13.5 112 16-129 233-361 (719)
76 KOG2936 Uncharacterized conser 72.8 45 0.00098 26.3 9.8 109 16-144 179-288 (301)
77 KOG4059 Uncharacterized conser 38.3 7.2 0.00016 27.7 -0.8 29 2-30 59-87 (193)
78 PF08417 PaO: Pheophorbide a o 28.6 1.6E+02 0.0034 18.6 5.4 25 104-128 23-47 (92)
79 PF06037 DUF922: Bacterial pro 28.4 2.2E+02 0.0048 20.2 6.9 24 106-130 39-67 (161)
80 PF08379 Bact_transglu_N: Bact 21.0 2.1E+02 0.0045 17.3 4.3 39 88-129 6-45 (82)
81 cd08884 RHO_alpha_C_GbcA-like 20.6 3.4E+02 0.0073 19.6 7.1 26 103-128 116-141 (205)
82 PF06200 tify: tify domain; I 20.5 1.2E+02 0.0025 15.9 2.1 21 10-30 12-32 (36)
No 1
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=99.91 E-value=4.6e-22 Score=140.44 Aligned_cols=114 Identities=25% Similarity=0.528 Sum_probs=98.4
Q ss_pred EEEEEEeCChHHHHHHhhcCCC--CCccccccceEEEcCCCCCCCcEEEEeccccccCCCCCcceEEEEEEeeeCCCCEE
Q 036221 13 SVGGIVDAPINKVWTIVSQTKK--LPEWMPMVERCTDLAGDEGVPGYIRLVSGFMFPQENGERSWIKERLISMDSSSHSY 90 (159)
Q Consensus 13 ~~s~~I~ap~~~VW~~l~d~~~--~~~W~p~v~~~~~~~g~~~~~G~~r~~~~~~~~~~~g~~~~~~e~i~~~d~~~~~~ 90 (159)
..+++|+||+|+||++++||.+ .+.|.|.+++|+.++|+ +++|++|.+. ++ .++....++|+|+.+|+.+|++
T Consensus 4 ~~e~~i~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~-~~~GsvR~~~---~~-~~~~~~~~kE~l~~~D~~~~~~ 78 (148)
T cd07816 4 EHEVELKVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGD-GGPGSIKLIT---FG-PGGKVKYVKERIDAVDEENKTY 78 (148)
T ss_pred EEEEEecCCHHHHHHHHhcChhhccccccccccEEEEEecC-CCCceEEEEE---Ec-CCCcceEEEEEEEEEcccccEE
Confidence 4677899999999999999984 46799999999988886 8999999987 22 1233458999999999988999
Q ss_pred EEEEeccCc---ceeeeEEEEEEEEcCCCCeEEEEEEEEecCCC
Q 036221 91 DYKMEASNV---GLDGSVNSLKLIDYGDDSTLVSWSFAIDPVEG 131 (159)
Q Consensus 91 ~y~~~~~~~---~~~~~~~~~~l~~~~~~~t~v~w~~~~~~~~~ 131 (159)
+|++.++++ ++.+|.++++|.|.++++|.++|+.+|++..+
T Consensus 79 ~y~vveg~~~~~~~~~y~~t~~v~~~~~~~t~v~Wt~~ye~~~~ 122 (148)
T cd07816 79 KYTVIEGDVLKDGYKSYKVEIKFVPKGDGGCVVKWTIEYEKKGD 122 (148)
T ss_pred EEEEEecccccCceEEEEEEEEEEECCCCCEEEEEEEEEEECCC
Confidence 999999876 48999999999999888999999999998754
No 2
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=99.89 E-value=4.8e-21 Score=132.29 Aligned_cols=137 Identities=27% Similarity=0.582 Sum_probs=116.3
Q ss_pred EEEEEEeCChHHHHHHhhcCCCCCccccccceEEEcCCCCCCCcEEEEeccccccCCCCCcceEEEEEEeeeCCCCEEEE
Q 036221 13 SVGGIVDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIRLVSGFMFPQENGERSWIKERLISMDSSSHSYDY 92 (159)
Q Consensus 13 ~~s~~I~ap~~~VW~~l~d~~~~~~W~p~v~~~~~~~g~~~~~G~~r~~~~~~~~~~~g~~~~~~e~i~~~d~~~~~~~y 92 (159)
+.+++|+||++.||++++|++++++|+|.+.+++...+++ ++|+.+.+. ...| ..+.++++.+||++++++|
T Consensus 4 ~~~~~i~a~~~~V~~~l~d~~~~~~w~~~~~~~~~~~~~~-~~g~~~~~~-----~~~g--~~~~~~i~~~~~~~~~i~~ 75 (140)
T cd07821 4 TVSVTIDAPADKVWALLSDFGGLHKWHPAVASCELEGGGP-GVGAVRTVT-----LKDG--GTVRERLLALDDAERRYSY 75 (140)
T ss_pred EEEEEECCCHHHHHHHHhCcCchhhhccCcceEEeecCCC-CCCeEEEEE-----eCCC--CEEEEEehhcCccCCEEEE
Confidence 5678999999999999999999999999999888776654 688887765 2233 5788999999988789999
Q ss_pred EEeccCcceeeeEEEEEEEEcCCCCeEEEEEEEEecCCCCChhHHHHHHHHHHHHHHHHHHHHHh
Q 036221 93 KMEASNVGLDGSVNSLKLIDYGDDSTLVSWSFAIDPVEGASEDSIIDYLGFLYKSCINRIDSAIQ 157 (159)
Q Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~~t~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~e 157 (159)
++..+..++..+.++++|+|.++++|+|+|+..+++..+.....+...+.+.+...|++|++.+|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~ 140 (140)
T cd07821 76 RIVEGPLPVKNYVATIRVTPEGDGGTRVTWTAEFDPPEGLTDELARAFLTGVYRAGLAALKAALE 140 (140)
T ss_pred EecCCCCCcccceEEEEEEECCCCccEEEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99976556777899999999987789999999999886555566788999999999999999885
No 3
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=99.86 E-value=1.2e-19 Score=125.17 Aligned_cols=137 Identities=22% Similarity=0.450 Sum_probs=108.3
Q ss_pred ceEEEEEEEEeCChHHHHHHhhcCCCCCccccccceEEEcCCCCCCCcEEEEeccccccCCCCCcceEEEEEEeeeCCCC
Q 036221 9 KWRGSVGGIVDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIRLVSGFMFPQENGERSWIKERLISMDSSSH 88 (159)
Q Consensus 9 ~~~~~~s~~I~ap~~~VW~~l~d~~~~~~W~p~v~~~~~~~g~~~~~G~~r~~~~~~~~~~~g~~~~~~e~i~~~d~~~~ 88 (159)
+++-+.+++|+|||++||++|+|+.++++|.|.+.+++..++ +++|..+.+. . .|. ..+.++++.++|..+
T Consensus 1 M~~~~~~~~v~a~~e~V~~~l~d~~~~~~w~~~~~~~~~~~~--~~~~~~~~~~-----~-~g~-~~~~~~i~~~~~~~~ 71 (139)
T PF10604_consen 1 MFKVEVSIEVPAPPEAVWDLLSDPENWPRWWPGVKSVELLSG--GGPGTERTVR-----V-AGR-GTVREEITEYDPEPR 71 (139)
T ss_dssp -EEEEEEEEESS-HHHHHHHHTTTTGGGGTSTTEEEEEEEEE--CSTEEEEEEE-----E-CSC-SEEEEEEEEEETTTT
T ss_pred CEEEEEEEEECCCHHHHHHHHhChhhhhhhhhceEEEEEccc--cccceeEEEE-----e-ccc-cceeEEEEEecCCCc
Confidence 367788999999999999999999999999999999987662 2335434443 1 232 478999999998449
Q ss_pred EEEEEEeccCcceeeeEEEEEEEEcCCCCeEEEEEEEEec-CCC-CChhHHHHHHHHHHHHHHHHHHHHHh
Q 036221 89 SYDYKMEASNVGLDGSVNSLKLIDYGDDSTLVSWSFAIDP-VEG-ASEDSIIDYLGFLYKSCINRIDSAIQ 157 (159)
Q Consensus 89 ~~~y~~~~~~~~~~~~~~~~~l~~~~~~~t~v~w~~~~~~-~~~-~~~~~~~~~~~~~~~~~l~~l~~~~e 157 (159)
.+.|++. ..|+..+.++++|+|.++ ||+|+|+.++++ ..+ +....+...+++.++..|++|++.+|
T Consensus 72 ~~~~~~~--~~~~~~~~~~~~~~~~~~-gt~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~E 139 (139)
T PF10604_consen 72 RITWRFV--PSGFTNGTGRWRFEPVGD-GTRVTWTVEFEPGLPGWLAGPLLRPAVKRIVREALENLKRAAE 139 (139)
T ss_dssp EEEEEEE--SSSSCEEEEEEEEEEETT-TEEEEEEEEEEESCTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEE--ecceeEEEEEEEEEEcCC-CEEEEEEEEEEEeccchhhHHHHHHHHHHHHHHHHHHHhcccC
Confidence 9999996 446667899999999985 599999999996 322 23455788889999999999999987
No 4
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=99.84 E-value=3.2e-19 Score=123.27 Aligned_cols=136 Identities=15% Similarity=0.160 Sum_probs=107.8
Q ss_pred EEEEEEEEeCChHHHHHHhhcCCCCCccccccceEEEcCCCCCCCcEEEEeccccccCCCCCcceEEEEEEeeeCCCCEE
Q 036221 11 RGSVGGIVDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIRLVSGFMFPQENGERSWIKERLISMDSSSHSY 90 (159)
Q Consensus 11 ~~~~s~~I~ap~~~VW~~l~d~~~~~~W~p~v~~~~~~~g~~~~~G~~r~~~~~~~~~~~g~~~~~~e~i~~~d~~~~~~ 90 (159)
+-+.+++|+||+++||++++|++++++|+|.+.+++...+.+ ++|+...+.+ .. ...+..+|++++|+ +++
T Consensus 2 ~~~~~~~i~Ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~-~~G~~~~~~~-----~~--~~~~~~~i~~~~p~-~~~ 72 (138)
T cd08862 2 KFEATIVIDAPPERVWAVLTDVENWPAWTPSVETVRLEGPPP-AVGSSFKMKP-----PG--LVRSTFTVTELRPG-HSF 72 (138)
T ss_pred EEEEEEEEcCCHHHHHHHHHhhhhcccccCcceEEEEecCCC-CCCcEEEEec-----CC--CCceEEEEEEecCC-CEE
Confidence 346788999999999999999999999999999898766533 6777665541 11 24677899999988 789
Q ss_pred EEEEeccCcceeeeEEEEEEEEcCCCCeEEEEEEEEecCCC-CChhHHHHHHHHHHHHHHHHHHHHHhh
Q 036221 91 DYKMEASNVGLDGSVNSLKLIDYGDDSTLVSWSFAIDPVEG-ASEDSIIDYLGFLYKSCINRIDSAIQK 158 (159)
Q Consensus 91 ~y~~~~~~~~~~~~~~~~~l~~~~~~~t~v~w~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~~~e~ 158 (159)
+|+... +...+..+++|++.++++|+++++.++.++.+ +....+.+.+.+.++..|++||+.+|+
T Consensus 73 ~~~~~~---~~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~ 138 (138)
T cd08862 73 TWTGPA---PGISAVHRHEFEAKPDGGVRVTTSESLSGPLAFLFGLFVGKKLRALLPEWLEGLKAAAEQ 138 (138)
T ss_pred EEEecC---CCEEEEEEEEEEEcCCCcEEEEEEEEeecchHHHHHHHHHHHHHhhHHHHHHHHHHHhcC
Confidence 998764 23356789999998767999999999987632 233457788899999999999999985
No 5
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.84 E-value=2.6e-19 Score=124.97 Aligned_cols=142 Identities=15% Similarity=0.118 Sum_probs=104.5
Q ss_pred EEEEEEeCChHHHHHHhhcCCCCCccccccceEEEcCCCCCCCcEEEEeccccccCCCCCcceEEEEEEeeeCCCCEEEE
Q 036221 13 SVGGIVDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIRLVSGFMFPQENGERSWIKERLISMDSSSHSYDY 92 (159)
Q Consensus 13 ~~s~~I~ap~~~VW~~l~d~~~~~~W~p~v~~~~~~~g~~~~~G~~r~~~~~~~~~~~g~~~~~~e~i~~~d~~~~~~~y 92 (159)
..++.|+|||+.||++++|++++++|+|.+.+|+++++.+.... ++...... .........+..++.+.++..+++.|
T Consensus 2 ~~~~~i~a~~~~Vw~~l~D~~~~~~w~p~v~~~~~l~~~~~~~~-~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~i~~ 79 (144)
T cd08866 2 VARVRVPAPPETVWAVLTDYDNLAEFIPNLAESRLLERNGNRVV-LEQTGKQG-ILFFKFEARVVLELREREEFPRELDF 79 (144)
T ss_pred eEEEEECCCHHHHHHHHhChhhHHhhCcCceEEEEEEcCCCEEE-EEEeeeEE-EEeeeeeEEEEEEEEEecCCCceEEE
Confidence 35789999999999999999999999999999988765322111 11110000 00000112445566666654589999
Q ss_pred EEeccCcceeeeEEEEEEEEcCC-CCeEEEEEEEEecCCCCChhHHHHHHHHHHHHHHHHHHHHHhh
Q 036221 93 KMEASNVGLDGSVNSLKLIDYGD-DSTLVSWSFAIDPVEGASEDSIIDYLGFLYKSCINRIDSAIQK 158 (159)
Q Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~-~~t~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~e~ 158 (159)
++..++ +..+.++|+|+|.++ ++|+|+|..++++..++....+...+.+.+..++++|++.+|+
T Consensus 80 ~~~~g~--~~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~~~p~~l~~~~~~~~~~~~l~~lr~~ae~ 144 (144)
T cd08866 80 EMVEGD--FKRFEGSWRLEPLADGGGTLLTYEVEVKPDFFAPVFLVEFVLRQDLPTNLLAIRAEAES 144 (144)
T ss_pred EEcCCc--hhceEEEEEEEECCCCCeEEEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 998763 567899999999987 6899999999998765555557778889999999999999985
No 6
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.84 E-value=2.6e-19 Score=123.43 Aligned_cols=137 Identities=10% Similarity=0.167 Sum_probs=107.5
Q ss_pred EEEEEEeCChHHHHHHhhcCCCCCccccccceEEEcCCCCCCCcEEEEeccccccCCCCCcceEEEEEEeeeCCCCEEEE
Q 036221 13 SVGGIVDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIRLVSGFMFPQENGERSWIKERLISMDSSSHSYDY 92 (159)
Q Consensus 13 ~~s~~I~ap~~~VW~~l~d~~~~~~W~p~v~~~~~~~g~~~~~G~~r~~~~~~~~~~~g~~~~~~e~i~~~d~~~~~~~y 92 (159)
+.++.|+||+++||++|+|++++++|+|.+.+++.+++.+.++|+...+... . .|....+.+++++++|+ +++.|
T Consensus 2 ~~~~~i~ap~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~~~~~g~~~~~~~~---~-~g~~~~~~~~v~~~~p~-~~~~~ 76 (140)
T cd08865 2 EESIVIERPVEEVFAYLADFENAPEWDPGVVEVEKITDGPVGVGTRYHQVRK---F-LGRRIELTYEITEYEPG-RRVVF 76 (140)
T ss_pred ceEEEEcCCHHHHHHHHHCccchhhhccCceEEEEcCCCCCcCccEEEEEEE---e-cCceEEEEEEEEEecCC-cEEEE
Confidence 4678899999999999999999999999998888776655677877665411 1 23334678899999988 89999
Q ss_pred EEeccCcceeeeEEEEEEEEcCCCCeEEEEEEEEecCCC--CChhHHHHHHHHHHHHHHHHHHHHHhh
Q 036221 93 KMEASNVGLDGSVNSLKLIDYGDDSTLVSWSFAIDPVEG--ASEDSIIDYLGFLYKSCINRIDSAIQK 158 (159)
Q Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~~t~v~w~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~l~~~~e~ 158 (159)
....++ + .+.++|+|++.++ +|+++|+.++++... +....+...+.+.++.++++||+.+|+
T Consensus 77 ~~~~~~--~-~~~~~~~~~~~~~-~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~e~ 140 (140)
T cd08865 77 RGSSGP--F-PYEDTYTFEPVGG-GTRVRYTAELEPGGFARLLDPLMAPAFRRRARAALENLKALLEA 140 (140)
T ss_pred EecCCC--c-ceEEEEEEEEcCC-ceEEEEEEEEccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhC
Confidence 987643 2 4789999999864 799999999987421 223346667788999999999999985
No 7
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.82 E-value=1.6e-18 Score=121.88 Aligned_cols=140 Identities=16% Similarity=0.233 Sum_probs=106.0
Q ss_pred eEEEEEEEEeCChHHHHHHhhcCCCCCccccccceEEE----cCCCCCCCcEEEEeccccccCCCCCcceEEEEEEeeeC
Q 036221 10 WRGSVGGIVDAPINKVWTIVSQTKKLPEWMPMVERCTD----LAGDEGVPGYIRLVSGFMFPQENGERSWIKERLISMDS 85 (159)
Q Consensus 10 ~~~~~s~~I~ap~~~VW~~l~d~~~~~~W~p~v~~~~~----~~g~~~~~G~~r~~~~~~~~~~~g~~~~~~e~i~~~d~ 85 (159)
|+-+.++.|+||+++||++++|+++|++|+|.+..+.. ..+.+.++|+...+.+ ..+ ......++++++|
T Consensus 2 ~~~~~s~~I~ap~e~V~~~i~D~~~~~~W~p~~~~~~~~~~~~~~~~~~~G~~~~~~~-----~~~-~~~~~~~v~~~~p 75 (150)
T cd07818 2 YRVERSIVINAPPEEVFPYVNDLKNWPEWSPWEKLDPDMKRTYSGPDSGVGASYSWEG-----NDK-VGEGEMEITESVP 75 (150)
T ss_pred eEEEEEEEEeCCHHHHHHHHhCcccCcccCchhhcCcceEEEecCCCCCCCeEEEEec-----CCc-ccceEEEEEecCC
Confidence 67789999999999999999999999999997754321 1233456787665542 121 1234678889988
Q ss_pred CCCEEEEEEeccCcce-eeeEEEEEEEEcCCCCeEEEEEEEEecCCCCC----hhHHHHHHHHHHHHHHHHHHHHHhh
Q 036221 86 SSHSYDYKMEASNVGL-DGSVNSLKLIDYGDDSTLVSWSFAIDPVEGAS----EDSIIDYLGFLYKSCINRIDSAIQK 158 (159)
Q Consensus 86 ~~~~~~y~~~~~~~~~-~~~~~~~~l~~~~~~~t~v~w~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~l~~~~e~ 158 (159)
+ +++.|+..... ++ ....++|+|++.+ +||+|+|+.+++.+.+.. ...+...+++.++..|++||+.+|+
T Consensus 76 ~-~~i~~~~~~~~-~~~~~~~~~~~~~~~~-~gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~ 150 (150)
T cd07818 76 N-ERIEYELRFIK-PFEATNDVEFTLEPVG-GGTKVTWGMSGELPFPLKLMYLFLDMDKMIGKDFEKGLANLKAVLEK 150 (150)
T ss_pred C-cEEEEEEEecC-CccccceEEEEEEEcC-CceEEEEEEEecCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhC
Confidence 8 89999998522 33 3678999999995 689999999999774322 2346777888999999999999985
No 8
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.80 E-value=7.3e-18 Score=116.39 Aligned_cols=138 Identities=18% Similarity=0.204 Sum_probs=103.3
Q ss_pred EEEEEEeCChHHHHHHhhcCCCCCccccccceEEEcCCCCCCCcEEEEeccccccCCCCCcceEEEEEEeeeCCCCEEEE
Q 036221 13 SVGGIVDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIRLVSGFMFPQENGERSWIKERLISMDSSSHSYDY 92 (159)
Q Consensus 13 ~~s~~I~ap~~~VW~~l~d~~~~~~W~p~v~~~~~~~g~~~~~G~~r~~~~~~~~~~~g~~~~~~e~i~~~d~~~~~~~y 92 (159)
+.+++|+||+++||++++|++++++|+|.+.+++... .++|....+.. ...++......++++++||+ +++.|
T Consensus 3 ~~~~~i~ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~---~~~G~~~~~~~---~~~~~~~~~~~~~v~~~~p~-~~~~~ 75 (141)
T cd07822 3 STEIEINAPPEKVWEVLTDFPSYPEWNPFVRSATGLS---LALGARLRFVV---KLPGGPPRSFKPRVTEVEPP-RRLAW 75 (141)
T ss_pred EEEEEecCCHHHHHHHHhccccccccChhheeEeccc---cCCCCEEEEEE---eCCCCCcEEEEEEEEEEcCC-CEeEE
Confidence 5678999999999999999999999999877665321 34554443321 01122345778899999998 89999
Q ss_pred EEeccCcceeeeEEEEEEEEcCCCCeEEEEEEEEecCC-CCChhHHHHHHHHHHHHHHHHHHHHHh
Q 036221 93 KMEASNVGLDGSVNSLKLIDYGDDSTLVSWSFAIDPVE-GASEDSIIDYLGFLYKSCINRIDSAIQ 157 (159)
Q Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~~t~v~w~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~l~~~~e 157 (159)
+...++.+......+++|++.++++|+++++..+.+.. .+....+...+...++.++++|++.+|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~T~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~~~~E 141 (141)
T cd07822 76 RGGLPFPGLLDGEHSFELEPLGDGGTRFVHRETFSGLLAPLVLLGLGRDLRAGFEAMNEALKARAE 141 (141)
T ss_pred EecCCCCcEeeEEEEEEEEEcCCCcEEEEEeeEEEEEEhHHhhhhhHHHHhHhHHHHHHHHHHhhC
Confidence 98875544345778999999867899999998887642 222344677888899999999998886
No 9
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=99.79 E-value=6.8e-18 Score=117.52 Aligned_cols=139 Identities=14% Similarity=0.169 Sum_probs=101.3
Q ss_pred EEEEEEeCChHHHHHHhhcCCCCCccccccceEEEcCCCCCCCcEEEEeccccccCCCCCcceEEEEEEeeeCCCCEEEE
Q 036221 13 SVGGIVDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIRLVSGFMFPQENGERSWIKERLISMDSSSHSYDY 92 (159)
Q Consensus 13 ~~s~~I~ap~~~VW~~l~d~~~~~~W~p~v~~~~~~~g~~~~~G~~r~~~~~~~~~~~g~~~~~~e~i~~~d~~~~~~~y 92 (159)
+.+++|+||++.||++++|+++||+|.|. .+++.++..++ ...++.+.. ...|.... .+....++++.+++.|
T Consensus 2 ~~s~~i~ap~~~V~~~l~D~~~~p~~~p~-~~~~~~~~~~~-~~~~~~~~~----~~~g~~~~-~~~~~~~~~~~~~i~~ 74 (142)
T cd08861 2 EHSVTVAAPAEDVYDLLADAERWPEFLPT-VHVERLELDGG-VERLRMWAT----AFDGSVHT-WTSRRVLDPEGRRIVF 74 (142)
T ss_pred eEEEEEcCCHHHHHHHHHhHHhhhccCCC-ceEEEEEEcCC-EEEEEEEEE----cCCCcEEE-EEEEEEEcCCCCEEEE
Confidence 46889999999999999999999999997 55554443211 112342220 11232222 2445567884589999
Q ss_pred EEeccCcceeeeEEEEEEEEcCCCCeEEEEEEEEecCC--CCChhHHHHHHHHHHHHHHHHHHHHHhh
Q 036221 93 KMEASNVGLDGSVNSLKLIDYGDDSTLVSWSFAIDPVE--GASEDSIIDYLGFLYKSCINRIDSAIQK 158 (159)
Q Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~~t~v~w~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~~~e~ 158 (159)
....++.++..+.+.|+|+|.++++|+|+|..++++.. ++....+.+.+.+.+..+|++||+++|+
T Consensus 75 ~~~~~~~~~~~~~g~w~~~~~~~~~t~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~ 142 (142)
T cd08861 75 RQEEPPPPVASMSGEWRFEPLGGGGTRVTLRHDFTLGIDSPEAVPWIRRALDRNSRAELAALRAAAER 142 (142)
T ss_pred EEeeCCCChhhheeEEEEEECCCCcEEEEEEEEEEECCCCchhHHHHHHHHccccHHHHHHHHHHhhC
Confidence 98864445667899999999987789999999999764 3445557778889999999999999985
No 10
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.79 E-value=1.2e-17 Score=115.46 Aligned_cols=132 Identities=14% Similarity=0.189 Sum_probs=102.0
Q ss_pred EEEEEEeCChHHHHHHhhcCCCCCccccccceEEEcCCCCCCCcEEEEeccccccCCCCCcceEEEEEEeeeCCCCEEEE
Q 036221 13 SVGGIVDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIRLVSGFMFPQENGERSWIKERLISMDSSSHSYDY 92 (159)
Q Consensus 13 ~~s~~I~ap~~~VW~~l~d~~~~~~W~p~v~~~~~~~g~~~~~G~~r~~~~~~~~~~~g~~~~~~e~i~~~d~~~~~~~y 92 (159)
+.+++|+||++.||+++.|+.++++|+|.+.+++.+++. +....+.. | .|.......+++.++++ +++.|
T Consensus 3 ~~~i~I~ap~e~V~~~~~D~~~~~~w~~~~~~~~~~~~~----~~~~~~~~---~--~g~~~~~~~~v~~~~~~-~~i~~ 72 (139)
T cd07817 3 EKSITVNVPVEEVYDFWRDFENLPRFMSHVESVEQLDDT----RSHWKAKG---P--AGLSVEWDAEITEQVPN-ERIAW 72 (139)
T ss_pred eEEEEeCCCHHHHHHHHhChhhhHHHhhhhcEEEEcCCC----ceEEEEec---C--CCCcEEEEEEEeccCCC-CEEEE
Confidence 567899999999999999999999999999999876541 22222221 1 24445667778888888 77999
Q ss_pred EEeccCcceeeeEEEEEEEEcCCCCeEEEEEEEEecCCCCC----hhHHHHHHHHHHHHHHHHHHHHHh
Q 036221 93 KMEASNVGLDGSVNSLKLIDYGDDSTLVSWSFAIDPVEGAS----EDSIIDYLGFLYKSCINRIDSAIQ 157 (159)
Q Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~~t~v~w~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~l~~~~e 157 (159)
....+. + ...++++|++.++++|+|+++.+++++.++. ...+...+++.++..|++||+.+|
T Consensus 73 ~~~~~~--~-~~~~~~~f~~~~~~~T~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~aE 138 (139)
T cd07817 73 RSVEGA--D-PNAGSVRFRPAPGRGTRVTLTIEYEPPGGAEGAAVAGLLGGEPERQLREDLRRFKQLVE 138 (139)
T ss_pred EECCCC--C-CcceEEEEEECCCCCeEEEEEEEEECCcchhhhhHHHHhhhhHHHHHHHHHHHHHHHhh
Confidence 887643 2 5789999999887789999999999875432 234666778899999999999998
No 11
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=99.78 E-value=5.7e-18 Score=117.67 Aligned_cols=137 Identities=15% Similarity=0.241 Sum_probs=103.5
Q ss_pred EEEEEEeCChHHHHHHhhcCCCCCccccccceEEEcCCCCCCCcEEEEeccccccCCCCCcceEEEEEEeeeCCCCEEEE
Q 036221 13 SVGGIVDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIRLVSGFMFPQENGERSWIKERLISMDSSSHSYDY 92 (159)
Q Consensus 13 ~~s~~I~ap~~~VW~~l~d~~~~~~W~p~v~~~~~~~g~~~~~G~~r~~~~~~~~~~~g~~~~~~e~i~~~d~~~~~~~y 92 (159)
+.+++|+||++.||++++|+++|++|+|.+.+++++++.+... ..+...++ .|.......++ .++++ ++++|
T Consensus 2 ~~s~~i~ap~~~v~~~i~D~~~~~~~~p~~~~~~vl~~~~~~~-~~~~~~~~-----~~~~~~~~~~~-~~~~~-~~i~~ 73 (138)
T cd07813 2 SKSRLVPYSAEQMFDLVADVERYPEFLPWCTASRVLERDEDEL-EAELTVGF-----GGIRESFTSRV-TLVPP-ESIEA 73 (138)
T ss_pred eEEEEcCCCHHHHHHHHHHHHhhhhhcCCccccEEEEcCCCEE-EEEEEEee-----ccccEEEEEEE-EecCC-CEEEE
Confidence 3578899999999999999999999999999999887654221 22222211 12222334444 46776 78898
Q ss_pred EEeccCcceeeeEEEEEEEEcCCCCeEEEEEEEEecCCCCChhHHHHHHHHHHHHHHHHHHHHHhhC
Q 036221 93 KMEASNVGLDGSVNSLKLIDYGDDSTLVSWSFAIDPVEGASEDSIIDYLGFLYKSCINRIDSAIQKV 159 (159)
Q Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~~t~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~e~~ 159 (159)
+...+ ++..+.++|+|+|.++++|+|+|..++++..++....+...+++....++++++++++++
T Consensus 74 ~~~~g--~~~~~~g~w~~~p~~~~~T~v~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~f~~~~~~~ 138 (138)
T cd07813 74 ELVDG--PFKHLEGEWRFKPLGENACKVEFDLEFEFKSRLLEALAGLVFDEVAKKMVDAFEKRAKQL 138 (138)
T ss_pred EecCC--ChhhceeEEEEEECCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 88765 456789999999999889999999999988654444466778889999999999998763
No 12
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=99.78 E-value=3.3e-17 Score=115.36 Aligned_cols=140 Identities=13% Similarity=0.180 Sum_probs=102.3
Q ss_pred EEEEEEEeCChHHHHHHhhcCCCCCccccccceEEEcCCCCCCCcEEEEeccccccCCCCCcceEEEEEEeeeCCCCEEE
Q 036221 12 GSVGGIVDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIRLVSGFMFPQENGERSWIKERLISMDSSSHSYD 91 (159)
Q Consensus 12 ~~~s~~I~ap~~~VW~~l~d~~~~~~W~p~v~~~~~~~g~~~~~G~~r~~~~~~~~~~~g~~~~~~e~i~~~d~~~~~~~ 91 (159)
.+-+++|+|||+.||+++.|+++||+|.|.+.++++++.++.+.|..-.+. .+. +|......-+. ..|++.+++.
T Consensus 3 ~~~si~i~a~~~~v~~lvaDv~~~P~~~~~~~~~~~l~~~~~~~~~r~~i~---~~~-~g~~~~w~s~~-~~~~~~~~i~ 77 (146)
T cd08860 3 TDNSIVIDAPLDLVWDMTNDIATWPDLFSEYAEAEVLEEDGDTVRFRLTMH---PDA-NGTVWSWVSER-TLDPVNRTVR 77 (146)
T ss_pred ceeEEEEcCCHHHHHHHHHhhhhhhhhccceEEEEEEEecCCeEEEEEEEE---ecc-CCEEEEEEEEE-EecCCCcEEE
Confidence 356889999999999999999999999999999998876556666422111 011 33222221121 2466657777
Q ss_pred EEEeccCcceeeeEEEEEEEEcCCCCeEEEEEEEEecCC--CCChhHHHHHHHHHHHHHHHHHHHHHhh
Q 036221 92 YKMEASNVGLDGSVNSLKLIDYGDDSTLVSWSFAIDPVE--GASEDSIIDYLGFLYKSCINRIDSAIQK 158 (159)
Q Consensus 92 y~~~~~~~~~~~~~~~~~l~~~~~~~t~v~w~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~~~e~ 158 (159)
++ .....|+....+.|+|+|.++ +|+|++..+|+... ++....+.+.+.+++...+++||+++|+
T Consensus 78 ~~-~~~~~p~~~m~~~W~f~~~~~-gT~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lk~~aE~ 144 (146)
T cd08860 78 AR-RVETGPFAYMNIRWEYTEVPE-GTRMRWVQDFEMKPGAPVDDAAMTDRLNTNTRAQMARIKKKIEA 144 (146)
T ss_pred EE-EecCCCcceeeeeEEEEECCC-CEEEEEEEEEEECCCCccchHHHHHHHhcccHHHHHHHHHHhhh
Confidence 74 222235788999999999965 59999999999764 4455568888899999999999999996
No 13
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.77 E-value=9e-17 Score=111.12 Aligned_cols=135 Identities=16% Similarity=0.191 Sum_probs=94.0
Q ss_pred EEEEEEEeCChHHHHHHhhcCCCCCccccccceEEEcCCCCCCCc-EEEEeccccccCCCCCcceEEEEEEeeeCC-CCE
Q 036221 12 GSVGGIVDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPG-YIRLVSGFMFPQENGERSWIKERLISMDSS-SHS 89 (159)
Q Consensus 12 ~~~s~~I~ap~~~VW~~l~d~~~~~~W~p~v~~~~~~~g~~~~~G-~~r~~~~~~~~~~~g~~~~~~e~i~~~d~~-~~~ 89 (159)
-+.++.|+||+++||++|+|++++++|+|.+.+++.+++++++.. ..+...+ .+. ...+.+..++.. .++
T Consensus 4 v~~s~~i~ap~e~V~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~~~~~~~~~ 75 (140)
T cd07819 4 VSREFEIEAPPAAVMDVLADVEAYPEWSPKVKSVEVLLRDNDGRPEMVRIGVG------AYG--IKDTYALEYTWDGAGS 75 (140)
T ss_pred EEEEEEEeCCHHHHHHHHhChhhhhhhCcceEEEEEeccCCCCCEEEEEEEEe------eee--EEEEEEEEEEEcCCCc
Confidence 456789999999999999999999999999999987665433332 2232221 111 111223333321 378
Q ss_pred EEEEEeccCcceeeeEEEEEEEEcCCCCeEEEEEEEEecCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 036221 90 YDYKMEASNVGLDGSVNSLKLIDYGDDSTLVSWSFAIDPVEGASEDSIIDYLGFLYKSCINRIDSAI 156 (159)
Q Consensus 90 ~~y~~~~~~~~~~~~~~~~~l~~~~~~~t~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 156 (159)
++|+...+. +...+.+.|+|+|.++ +|+|+|+.++++..++....+..........++++|++.+
T Consensus 76 i~~~~~~~~-~~~~~~~~~~~~~~~~-~t~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (140)
T cd07819 76 VSWTLVEGE-GNRSQEGSYTLTPKGD-GTRVTFDLTVELTVPLPGFLKRKAEPLVLDEALKGLKKRV 140 (140)
T ss_pred EEEEEeccc-ceeEEEEEEEEEECCC-CEEEEEEEEEEecCCCCHHHHHHhhhHHHHHHHHhHhhhC
Confidence 999998753 4667889999999976 7999999999976544333344555677888888888754
No 14
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.75 E-value=4.6e-17 Score=113.57 Aligned_cols=140 Identities=15% Similarity=0.200 Sum_probs=98.8
Q ss_pred EEEEEEeCChHHHHHHhhcCCCCCccccccceEEEcCC-CCCCCcEEEEeccccccCCCCCcceEEEEEEeeeCCCCEEE
Q 036221 13 SVGGIVDAPINKVWTIVSQTKKLPEWMPMVERCTDLAG-DEGVPGYIRLVSGFMFPQENGERSWIKERLISMDSSSHSYD 91 (159)
Q Consensus 13 ~~s~~I~ap~~~VW~~l~d~~~~~~W~p~v~~~~~~~g-~~~~~G~~r~~~~~~~~~~~g~~~~~~e~i~~~d~~~~~~~ 91 (159)
+.+++|+|||+.||++++|+.++++|+|.........+ .+.++|....+.. ... |....+..++++++|+ ++++
T Consensus 3 ~~~~~i~ap~e~Vw~~l~d~~~~~~W~~~~~~~~~~~~~~~~~~G~~~~~~~---~~~-g~~~~~~~~v~~~~p~-~~l~ 77 (144)
T cd07825 3 SVSRTVDAPAEAVFAVLADPRRHPEIDGSGTVREAIDGPRILAVGDVFRMAM---RLD-GGPYRITNHVVAFEEN-RLIA 77 (144)
T ss_pred EEEEEEeCCHHHHHHHHhCccccceeCCCCccccccCCCccCCCCCEEEEEE---EcC-CCceEEEEEEEEECCC-CEEE
Confidence 57889999999999999999999999985332222222 2346776655431 111 3345667789999998 8999
Q ss_pred EEEeccCcceeeeEEEEEEEEcCCCCeEEEEEEEEecCCCCCh-hHHHHHHHHHHHHHHHHHHHHHh
Q 036221 92 YKMEASNVGLDGSVNSLKLIDYGDDSTLVSWSFAIDPVEGASE-DSIIDYLGFLYKSCINRIDSAIQ 157 (159)
Q Consensus 92 y~~~~~~~~~~~~~~~~~l~~~~~~~t~v~w~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~~e 157 (159)
|+......+......+++|++.++++|+|+++..|.+...... ..+.....+.+++.|++|++.+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~~~g~T~vt~~~~~~g~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~ 144 (144)
T cd07825 78 WRPGPAGQEPGGHRWRWELEPIGPGRTRVTETYDWSAVTDLKELLGFPAFPEVQLEASLDRLATLAE 144 (144)
T ss_pred EEccCCCCCCCceeEEEEEEECCCCcEEEEEEEeccCChhhhhccccCCCCHHHHHHHHHHHHHHhC
Confidence 9975322233346678999999878899999999987642111 11334467889999999999886
No 15
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=99.71 E-value=3.8e-16 Score=107.84 Aligned_cols=136 Identities=16% Similarity=0.288 Sum_probs=100.9
Q ss_pred EEEEEEeCChHHHHHHhhcCCCCCccccccceEEEcCCCCCCCcEEEEeccccccCCCCCcceEEEEEEeeeCCCCEEEE
Q 036221 13 SVGGIVDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIRLVSGFMFPQENGERSWIKERLISMDSSSHSYDY 92 (159)
Q Consensus 13 ~~s~~I~ap~~~VW~~l~d~~~~~~W~p~v~~~~~~~g~~~~~G~~r~~~~~~~~~~~g~~~~~~e~i~~~d~~~~~~~y 92 (159)
..+++|+||++.||++|+|++++++|+|.+..+.. +...| |+.+.... ...|....+..++++++++ +++.|
T Consensus 3 ~~s~~I~a~~~~Vw~~l~d~~~~~~w~~~~~~~~~-~~~~G--g~~~~~~~----~~~g~~~~~~~~i~~~~~~-~~i~~ 74 (139)
T cd07814 3 TIEREFDAPPELVWRALTDPELLAQWFGPTTTAEM-DLRVG--GRWFFFMT----GPDGEEGWVSGEVLEVEPP-RRLVF 74 (139)
T ss_pred EEEEEecCCHHHHHHHcCCHHHHHhhhCcCCceEE-cccCC--ceEEEEEE----CCCCCEEeccEEEEEEcCC-CeEEE
Confidence 46788999999999999999999999996322221 11112 55554431 1123345778999999998 89999
Q ss_pred EEeccCc-ceeeeEEEEEEEEcCCCCeEEEEEEEEecCCCCChhHHHHHHHHHHHHHHHHHHHHHhh
Q 036221 93 KMEASNV-GLDGSVNSLKLIDYGDDSTLVSWSFAIDPVEGASEDSIIDYLGFLYKSCINRIDSAIQK 158 (159)
Q Consensus 93 ~~~~~~~-~~~~~~~~~~l~~~~~~~t~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~e~ 158 (159)
+...+.. +.......|+|.+.+ ++|+|+++.++.+..+. ...+...+.+.+..+|++||+.||.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~-~~T~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~lk~~~E~ 139 (139)
T cd07814 75 TWAFSDETPGPETTVTVTLEETG-GGTRLTLTHSGFPEEDA-EQEAREGMEEGWTGTLDRLKALLEK 139 (139)
T ss_pred EecccCCCCCCceEEEEEEEECC-CCEEEEEEEEccChHhH-HHHHHhCHhhHHHHHHHHHHHHhhC
Confidence 9987543 344678899999998 67999999988876322 4456777788999999999999984
No 16
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.71 E-value=2.2e-15 Score=105.77 Aligned_cols=134 Identities=18% Similarity=0.241 Sum_probs=91.3
Q ss_pred EEEEEEeCChHHHHHHhhcCCCCCccccccceEEEcC-CCCCCCcEEEEeccccccCCCCCcceEEEEEEeeeCCCCEEE
Q 036221 13 SVGGIVDAPINKVWTIVSQTKKLPEWMPMVERCTDLA-GDEGVPGYIRLVSGFMFPQENGERSWIKERLISMDSSSHSYD 91 (159)
Q Consensus 13 ~~s~~I~ap~~~VW~~l~d~~~~~~W~p~v~~~~~~~-g~~~~~G~~r~~~~~~~~~~~g~~~~~~e~i~~~d~~~~~~~ 91 (159)
..+..|+||+++||++++|++++++|.|.+.++++++ +++.++|+.....- ....|.......++++++++ +++.
T Consensus 4 ~~~~~i~ap~e~Vw~~~tD~~~~~~w~~~v~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~v~~~~p~-~~~~ 79 (146)
T cd07824 4 HTVWRIPAPPEAVWDVLVDAESWPDWWPGVERVVELEPGDEAGIGARRRYTW---RGLLPYRLRFELRVTRIEPL-SLLE 79 (146)
T ss_pred eEEEEecCCHHHHHHHHhChhhcchhhhceEEEEEccCCCCCCcceEEEEEE---EecCCcEEEEEEEEEeecCC-cEEE
Confidence 3467899999999999999999999999999998877 34556776543210 00112223566777888888 8999
Q ss_pred EEEeccCcceeeeEEEEEEEEcCCCCeEEEEEEEEecCCC---CChhH----HHHHHHHHHHHHHHHHHHH
Q 036221 92 YKMEASNVGLDGSVNSLKLIDYGDDSTLVSWSFAIDPVEG---ASEDS----IIDYLGFLYKSCINRIDSA 155 (159)
Q Consensus 92 y~~~~~~~~~~~~~~~~~l~~~~~~~t~v~w~~~~~~~~~---~~~~~----~~~~~~~~~~~~l~~l~~~ 155 (159)
|... ++ + ...++++|++.+ +||+|+++.+++...+ +.... +....++.++..+++||++
T Consensus 80 ~~~~-g~--~-~~~~~~~~~~~~-~gt~vt~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~L~~~ 145 (146)
T cd07824 80 VRAS-GD--L-EGVGRWTLAPDG-SGTVVRYDWEVRTTKPWMNLLAPLARPVFRWNHRRVMRAGEKGLARR 145 (146)
T ss_pred EEEE-Ee--e-eEEEEEEEEEcC-CCEEEEEEEEEEcCHHHHHhhhHhhhhHHHHhHHHHHHhHHHHHHhh
Confidence 9864 33 2 247899999975 5799999999997532 22222 3334444555555555544
No 17
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=99.68 E-value=5.3e-15 Score=104.65 Aligned_cols=138 Identities=20% Similarity=0.384 Sum_probs=101.3
Q ss_pred EEEEEEeCChHHHHHHhhcC-CCCCcccccc-ceEEEcCCCCCCCcEEEEeccccccCCCCCcceEEEEEEeeeCCCCEE
Q 036221 13 SVGGIVDAPINKVWTIVSQT-KKLPEWMPMV-ERCTDLAGDEGVPGYIRLVSGFMFPQENGERSWIKERLISMDSSSHSY 90 (159)
Q Consensus 13 ~~s~~I~ap~~~VW~~l~d~-~~~~~W~p~v-~~~~~~~g~~~~~G~~r~~~~~~~~~~~g~~~~~~e~i~~~d~~~~~~ 90 (159)
+.++++++||+++|+++.+. ..+|+-+|.+ +++++++|+++..|++|.+. |. .+|....++|++..+|++++.+
T Consensus 7 ~~E~~~~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~---f~-~~~~~~~~Kekve~~D~~~~~~ 82 (151)
T PF00407_consen 7 EVEVEVKVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWT---FG-PGGPFKYVKEKVEAIDEENKTI 82 (151)
T ss_dssp EEEEEESS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEE---EE-TTSSEEEEEEEEEEEETTTTEE
T ss_pred EEEEEecCCHHHHHHHHhcCccchhhhChhhceeEEEEccCCCCCCeEEEEE---ec-CCCCcceeEEEEEeecCCCcEE
Confidence 34456899999999999964 3368888864 88899999654445999997 32 2455578999999999999999
Q ss_pred EEEEeccCc--ceeeeEEEEEEEEcCCCCeEEEEEEEEecCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 036221 91 DYKMEASNV--GLDGSVNSLKLIDYGDDSTLVSWSFAIDPVEGASEDSIIDYLGFLYKSCINRIDSAI 156 (159)
Q Consensus 91 ~y~~~~~~~--~~~~~~~~~~l~~~~~~~t~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 156 (159)
+|++++|.. .+..+..++++.|.++++|.++|+.+|+......... ...+ ..+..++..+.+++
T Consensus 83 ~y~viEGd~l~~~~~~~~~~~~~~~~~g~~v~k~t~~Ye~~~~~~~~p-~~~~-~~~~~~~K~ieayL 148 (151)
T PF00407_consen 83 TYTVIEGDVLGDYKSFKSTIQKIPKGDGGCVVKWTIEYEKKGEDVPPP-EKYL-DFAVGMFKAIEAYL 148 (151)
T ss_dssp EEEEEEETTGTTTEEEEEEEEEEEETTSCEEEEEEEEEEESSTSCHHH-HHHH-HHHHHHHHHHHHHH
T ss_pred EEEEEeccccccEEEEEEEEEecCCCCCceEEEEEEEEEecCCCCCCc-HHHH-HHHHHHHHHHHHHH
Confidence 999999863 3567889999999888889999999999875433221 1222 23566666666654
No 18
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.68 E-value=8.3e-15 Score=99.15 Aligned_cols=136 Identities=21% Similarity=0.329 Sum_probs=102.1
Q ss_pred EEEEEEeCChHHHHHHhhcCCCCCccccccceEEEcCCCCCCCcEEEEeccccccCCCCCcceEEEEEEeeeCCCCEEEE
Q 036221 13 SVGGIVDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIRLVSGFMFPQENGERSWIKERLISMDSSSHSYDY 92 (159)
Q Consensus 13 ~~s~~I~ap~~~VW~~l~d~~~~~~W~p~v~~~~~~~g~~~~~G~~r~~~~~~~~~~~g~~~~~~e~i~~~d~~~~~~~y 92 (159)
+.++.|+||+++||++++|++++++|.|.+.+++...+.....|....+. ...+.......++..++++ .+++|
T Consensus 2 ~~~~~i~a~~~~v~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~v~~~~~~-~~~~~ 75 (141)
T cd07812 2 EASIEIPAPPEAVWDLLSDPERWPEWSPGLERVEVLGGGEGGVGARFVGG-----RKGGRRLTLTSEVTEVDPP-RPGRF 75 (141)
T ss_pred cEEEEeCCCHHHHHHHHhChhhhhhhCcccceEEEcCCCCccceeEEEEE-----ecCCccccceEEEEEecCC-CceEE
Confidence 46789999999999999999999999999999987776555666555443 1112234668889898886 78899
Q ss_pred EEeccCcceeeeEEEEEEEEcCCCCeEEEEEEEEecCCCC---ChhHHHHHHHHHHHHHHHHHHHH
Q 036221 93 KMEASNVGLDGSVNSLKLIDYGDDSTLVSWSFAIDPVEGA---SEDSIIDYLGFLYKSCINRIDSA 155 (159)
Q Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~~t~v~w~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~l~~~ 155 (159)
.....+.+ ..+.+++++.+.++++|+++|+.++.+..+. ....+.+.+.+.+...+.++++.
T Consensus 76 ~~~~~~~~-~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T cd07812 76 RVTGGGGG-VDGTGEWRLEPEGDGGTRVTYTVEYDPPGPLLKVFALLLAGALKRELAALLRALKAR 140 (141)
T ss_pred EEecCCCC-cceeEEEEEEECCCCcEEEEEEEEEecCCcchhhhhHHHHHHHHhHHHHHHHHHHhh
Confidence 98875443 4688999999987658999999999987543 23445666666666666666654
No 19
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.67 E-value=2.9e-15 Score=103.98 Aligned_cols=137 Identities=18% Similarity=0.182 Sum_probs=96.5
Q ss_pred EEEEEEeCChHHHHHHhhcCCCCCccccccceEEEcCCCCCCCcEEEEeccccccCCCCCcceEEEEEEeeeCCCCEEEE
Q 036221 13 SVGGIVDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIRLVSGFMFPQENGERSWIKERLISMDSSSHSYDY 92 (159)
Q Consensus 13 ~~s~~I~ap~~~VW~~l~d~~~~~~W~p~v~~~~~~~g~~~~~G~~r~~~~~~~~~~~g~~~~~~e~i~~~d~~~~~~~y 92 (159)
+.++.|++|+++||++++|++++++|.|.+.+++.++++..... .+.-.+ +. +.......++++++++ +++.+
T Consensus 4 ~~~~~i~a~~e~v~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~-~~~~~~---~~--~~~~~~~~~~~~~~~~-~~~~~ 76 (144)
T cd05018 4 SGEFRIPAPPEEVWAALNDPEVLARCIPGCESLEKIGPNEYEAT-VKLKVG---PV--KGTFKGKVELSDLDPP-ESYTI 76 (144)
T ss_pred eeEEEecCCHHHHHHHhcCHHHHHhhccchhhccccCCCeEEEE-EEEEEc---cE--EEEEEEEEEEEecCCC-cEEEE
Confidence 46788999999999999999999999999988876654322111 111001 11 1123345677788877 77888
Q ss_pred EEeccC-cceeeeEEEEEEEEcCCCCeEEEEEEEEecCCCC---ChhHHHHHHHHHHHHHHHHHHHHHh
Q 036221 93 KMEASN-VGLDGSVNSLKLIDYGDDSTLVSWSFAIDPVEGA---SEDSIIDYLGFLYKSCINRIDSAIQ 157 (159)
Q Consensus 93 ~~~~~~-~~~~~~~~~~~l~~~~~~~t~v~w~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~l~~~~e 157 (159)
...... .....+.++|.|+|. +++|+|+|+.++++...+ ....+...+.+.+...+++|++.++
T Consensus 77 ~~~~~~~~~~~~~~~~~~l~~~-~~gT~v~~~~~~~~~g~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 144 (144)
T cd05018 77 TGEGKGGAGFVKGTARVTLEPD-GGGTRLTYTADAQVGGKLAQLGSRLIDGAARKLINQFFENLASKIG 144 (144)
T ss_pred EEEEcCCCceEEEEEEEEEEec-CCcEEEEEEEEEEEccChhhhCHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 876422 234578999999998 578999999999965322 3444666777888888999988763
No 20
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.64 E-value=1.4e-14 Score=100.67 Aligned_cols=112 Identities=13% Similarity=0.087 Sum_probs=84.9
Q ss_pred EEEEEEeCChHHHHHHhhcCCCCCccccccceEEEcCCC--CCCCcEEEEeccccccCCCCCcceEEEEEEeeeCCCCEE
Q 036221 13 SVGGIVDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGD--EGVPGYIRLVSGFMFPQENGERSWIKERLISMDSSSHSY 90 (159)
Q Consensus 13 ~~s~~I~ap~~~VW~~l~d~~~~~~W~p~v~~~~~~~g~--~~~~G~~r~~~~~~~~~~~g~~~~~~e~i~~~d~~~~~~ 90 (159)
+.+++|+||++.||++++|.+++++|+|.+.++++++.. ...+|+...+.- .. .|.......++++++|+ +++
T Consensus 2 ~~s~~I~ap~e~V~~~~~d~~~~~~~~p~~~~v~~~~~~~~~~~~G~~~~~~~---~~-~~~~~~w~~~it~~~p~-~~f 76 (137)
T cd07820 2 ERSTVIPAPIEEVFDFHSRPDNLERLTPPWLEFAVLGRTPGLIYGGARVTYRL---RH-FGIPQRWTTEITEVEPP-RRF 76 (137)
T ss_pred eEEEEcCCCHHHHHHHHcCcchHHhcCCCCCCeEEEecCCCcccCCcEEEEEE---Ee-cCCceEEEEEEEEEcCC-CeE
Confidence 467899999999999999999999999999888876432 234565544331 11 22234567778899888 889
Q ss_pred EEEEeccCcceeeeEEEEEEEEcCCCCeEEEEEEEEecCCCC
Q 036221 91 DYKMEASNVGLDGSVNSLKLIDYGDDSTLVSWSFAIDPVEGA 132 (159)
Q Consensus 91 ~y~~~~~~~~~~~~~~~~~l~~~~~~~t~v~w~~~~~~~~~~ 132 (159)
++....+ ++..+.+++.+++.++ +|+|+++.+|+++.+.
T Consensus 77 ~~~~~~G--~~~~w~h~~~f~~~~~-gT~vt~~v~~~~p~g~ 115 (137)
T cd07820 77 VDEQVSG--PFRSWRHTHRFEAIGG-GTLMTDRVEYRLPLGP 115 (137)
T ss_pred EEEeccC--CchhCEEEEEEEECCC-ceEEEEEEEEeCCchh
Confidence 9998765 3556888999999875 7999999999997543
No 21
>PRK10724 hypothetical protein; Provisional
Probab=99.61 E-value=2.7e-14 Score=101.72 Aligned_cols=138 Identities=10% Similarity=0.129 Sum_probs=99.6
Q ss_pred EEEEEEEEeCChHHHHHHhhcCCCCCccccccceEEEcCCCCCCCcEEEEeccccccCCCCCcceEEEEEEeeeCCCCEE
Q 036221 11 RGSVGGIVDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIRLVSGFMFPQENGERSWIKERLISMDSSSHSY 90 (159)
Q Consensus 11 ~~~~s~~I~ap~~~VW~~l~d~~~~~~W~p~v~~~~~~~g~~~~~G~~r~~~~~~~~~~~g~~~~~~e~i~~~d~~~~~~ 90 (159)
+-..++.|++|++.+|+++.|.++||+|.|.+.++++++..+++. ..+...|+ +|-......++ .++++ +++
T Consensus 16 ~i~~~~~v~~s~~~v~~lv~Dve~yp~flp~~~~s~vl~~~~~~~-~a~l~v~~-----~g~~~~f~srv-~~~~~-~~I 87 (158)
T PRK10724 16 QISRTALVPYSAEQMYQLVNDVQSYPQFLPGCTGSRVLESTPGQM-TAAVDVSK-----AGISKTFTTRN-QLTSN-QSI 87 (158)
T ss_pred eEEEEEEecCCHHHHHHHHHHHHHHHHhCcccCeEEEEEecCCEE-EEEEEEee-----CCccEEEEEEE-EecCC-CEE
Confidence 456678899999999999999999999999999998776533221 12222121 22222333444 44566 789
Q ss_pred EEEEeccCcceeeeEEEEEEEEcCCCCeEEEEEEEEecCCCCChhHHHHHHHHHHHHHHHHHHHHHhh
Q 036221 91 DYKMEASNVGLDGSVNSLKLIDYGDDSTLVSWSFAIDPVEGASEDSIIDYLGFLYKSCINRIDSAIQK 158 (159)
Q Consensus 91 ~y~~~~~~~~~~~~~~~~~l~~~~~~~t~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~e~ 158 (159)
.+...+| |+....+.|+++|.++++|+|++..+|+...++....+..........++++.++++++
T Consensus 88 ~~~~~~G--pF~~l~g~W~f~p~~~~~t~V~~~l~fef~s~l~~~~~~~~~~~~~~~mv~AF~~Ra~~ 153 (158)
T PRK10724 88 LMQLVDG--PFKKLIGGWKFTPLSQEACRIEFHLDFEFTNKLIELAFGRVFKELASNMVQAFTVRAKE 153 (158)
T ss_pred EEEecCC--ChhhccceEEEEECCCCCEEEEEEEEEEEchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998876 57789999999999877899999999998765544445556666777777777777765
No 22
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.55 E-value=1.6e-13 Score=96.29 Aligned_cols=138 Identities=17% Similarity=0.212 Sum_probs=91.6
Q ss_pred EEEEEeCChHHHHHHhhcCCCCCccccccceEEEcCCCCCCCcEEEEeccccccCCCCCcceEEEEEEeeeCCCCEEEEE
Q 036221 14 VGGIVDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIRLVSGFMFPQENGERSWIKERLISMDSSSHSYDYK 93 (159)
Q Consensus 14 ~s~~I~ap~~~VW~~l~d~~~~~~W~p~v~~~~~~~g~~~~~G~~r~~~~~~~~~~~g~~~~~~e~i~~~d~~~~~~~y~ 93 (159)
-+++|+|||+.||++|+|+++++.|.|++.+.+..++... ....+.-.+ +. ......+-++++++++.+++.+.
T Consensus 3 ~~~~v~a~pe~vw~~l~D~~~~~~~~pg~~~~~~~~~~~~-~~~~~~~~g---~~--~~~~~~~~~~~~~~~~~~~~~~~ 76 (146)
T cd07823 3 NEFTVPAPPDRVWALLLDIERVAPCLPGASLTEVEGDDEY-KGTVKVKLG---PI--SASFKGTARLLEDDEAARRAVLE 76 (146)
T ss_pred ceEEecCCHHHHHHHhcCHHHHHhcCCCceeccccCCCeE-EEEEEEEEc---cE--EEEEEEEEEEEeccCCCcEEEEE
Confidence 3678999999999999999999999999887765332211 111111111 11 00122345677887333888887
Q ss_pred EeccCc---ceeeeEEEEEEEEcCCCCeEEEEEEEEecCC---CCChhHHHHHHHHHHHHHHHHHHHHHhh
Q 036221 94 MEASNV---GLDGSVNSLKLIDYGDDSTLVSWSFAIDPVE---GASEDSIIDYLGFLYKSCINRIDSAIQK 158 (159)
Q Consensus 94 ~~~~~~---~~~~~~~~~~l~~~~~~~t~v~w~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~l~~~~e~ 158 (159)
....+. +......+++|.+ ++++|+|+|..+++... .+....+.+..++.+...+++|++.+|.
T Consensus 77 ~~g~~~~~~g~~~~~~~~~l~~-~~~gT~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~~~~~~l~~~~e~ 146 (146)
T cd07823 77 ATGKDARGQGTAEATVTLRLSP-AGGGTRVTVDTDLALTGKLAQFGRGGIGDVAGRLLAQFAANLEARLAA 146 (146)
T ss_pred EEEecCCCcceEEEEEEEEEEe-cCCcEEEEEEEEEEEeeEhHHhChhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 764211 1224667888998 45789999999877543 2334457777788899999999998874
No 23
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=99.52 E-value=3.4e-13 Score=92.42 Aligned_cols=126 Identities=15% Similarity=0.240 Sum_probs=82.4
Q ss_pred EeCChHHHHHHhhcCCCCCccccccceEEEcCCCCCCCcEEEEeccccccCCCCCcceEEEEEEeeeCCCCEEEEEEecc
Q 036221 18 VDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIRLVSGFMFPQENGERSWIKERLISMDSSSHSYDYKMEAS 97 (159)
Q Consensus 18 I~ap~~~VW~~l~d~~~~~~W~p~v~~~~~~~g~~~~~G~~r~~~~~~~~~~~g~~~~~~e~i~~~d~~~~~~~y~~~~~ 97 (159)
|+||++.||++++|+++|++|+|.+.++++++..+........+. ..+.......++....+. . +.+....+
T Consensus 1 V~ap~~~V~~~i~D~e~~~~~~p~~~~v~vl~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-~-~~~~~~~g 72 (130)
T PF03364_consen 1 VNAPPEEVWSVITDYENYPRFFPPVKEVRVLERDGDGMRARWEVK------FGGIKRSWTSRVTEDPPE-R-IRFEQISG 72 (130)
T ss_dssp ESS-HHHHHHHHTTGGGHHHHCTTEEEEEEEEEECCEEEEEEEEC------TTTTCEEEEEEEEEECTT-T-EEEESSET
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCeEEEEEEEe------cCCEEEEEEEEEEEEEee-e-eeeeecCC
Confidence 789999999999999999999999999998876543111111221 123334455566444333 3 66666655
Q ss_pred CcceeeeEEEEEEEEcCC--CC--eEEEEEEEEecCCCCChhHHHHHHHHHHHHHHHHHH
Q 036221 98 NVGLDGSVNSLKLIDYGD--DS--TLVSWSFAIDPVEGASEDSIIDYLGFLYKSCINRID 153 (159)
Q Consensus 98 ~~~~~~~~~~~~l~~~~~--~~--t~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 153 (159)
+++.+.++|++++.++ |+ |++++..++++..++....+...++.....++++|+
T Consensus 73 --~~~~~~g~W~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (130)
T PF03364_consen 73 --PFKSFEGSWRFEPLGGNEGGTRTRVTYDYEVDPPGPLPGFLARQFFRRDLRQMLEAFR 130 (130)
T ss_dssp --TEEEEEEEEEEEEETTECCEEEEEEEEEEEEETSSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CchhcEEEEEEEECCCCcCCCEEEEEEEEEEecCcHhHHHHHHHHHHHHHHHHHHhhC
Confidence 4778999999999874 14 556666566555544343455566677777777764
No 24
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.38 E-value=3.3e-11 Score=83.78 Aligned_cols=134 Identities=12% Similarity=0.239 Sum_probs=88.0
Q ss_pred EEEEEEeCChHHHHHHhhcCCCCCccccccceEEEcCCCCCCCcEEEEeccccccCCCCCcceEEEEEEeeeCCCCEEEE
Q 036221 13 SVGGIVDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIRLVSGFMFPQENGERSWIKERLISMDSSSHSYDY 92 (159)
Q Consensus 13 ~~s~~I~ap~~~VW~~l~d~~~~~~W~p~v~~~~~~~g~~~~~G~~r~~~~~~~~~~~g~~~~~~e~i~~~d~~~~~~~y 92 (159)
+.+++|+||++.||++++|.+.+++|++... +. ...+.+..|..+ .. ++......-++++++|+ +++.|
T Consensus 4 ~~~i~i~a~~e~Vw~~~td~~~~~~W~~~~~-~~-~~~~~~~~g~~~-~~-------~~~~~~~~~~i~~~~p~-~~l~~ 72 (145)
T cd08898 4 ERTILIDAPRERVWRALTDPEHFGQWFGVKL-GP-FVVGEGATGEIT-YP-------GYEHGVFPVTVVEVDPP-RRFSF 72 (145)
T ss_pred EEEEEecCCHHHHHHHhcChhhhhhcccccC-CC-cccCCcceeEEe-cC-------CCCccceEEEEEEeCCC-cEEEE
Confidence 5678999999999999999999999998642 11 111111222221 11 11113556789999999 99999
Q ss_pred EEeccC----c---ceeeeEEEEEEEEcCCCCeEEEEEEE-EecCCCCChhHHHHHHHHHHHHHHHHHHHHHhh
Q 036221 93 KMEASN----V---GLDGSVNSLKLIDYGDDSTLVSWSFA-IDPVEGASEDSIIDYLGFLYKSCINRIDSAIQK 158 (159)
Q Consensus 93 ~~~~~~----~---~~~~~~~~~~l~~~~~~~t~v~w~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~e~ 158 (159)
+..... . .......+++|++.+ ++|+|+++-. +.....................+|.+|++.||+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gT~vt~~~~~~~~~~~~~~~~~~~~~~~gw~~~l~~L~~~le~ 145 (145)
T cd08898 73 RWHPPAIDPGEDYSAEPSTLVEFTLEPIA-GGTLLTVTESGFDALPAERRAEAYRMNEGGWDEQLENLVAYVEA 145 (145)
T ss_pred EecCCCcccccccCCCCceEEEEEEEecC-CcEEEEEEEcCCCCCChHHHHHHHHhhhhhHHHHHHHHHHHhcC
Confidence 986432 0 122456899999986 5799999865 322110111124456678899999999999884
No 25
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=99.37 E-value=3.4e-11 Score=82.79 Aligned_cols=130 Identities=8% Similarity=0.043 Sum_probs=88.8
Q ss_pred EEEEEEeCChHHHHHHhhcCCCCCccccccceEEEcCCCCCCCcEEEEeccccccCCCCCcceEEEEEEeeeCCCCEEEE
Q 036221 13 SVGGIVDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIRLVSGFMFPQENGERSWIKERLISMDSSSHSYDY 92 (159)
Q Consensus 13 ~~s~~I~ap~~~VW~~l~d~~~~~~W~p~v~~~~~~~g~~~~~G~~r~~~~~~~~~~~g~~~~~~e~i~~~d~~~~~~~y 92 (159)
..++.|+|||++||++++|..++++|.+... + .. +..+|....... .+.....+.-++++++++ +++.|
T Consensus 3 ~~~~~i~ap~e~Vw~~~td~~~~~~W~~~~~-~---~~-~~~~G~~~~~~~-----~~~~~~~~~~~v~~~~~~-~~l~~ 71 (136)
T cd08893 3 VYVTYIRATPEKVWQALTDPEFTRQYWGGTT-V---ES-DWKVGSAFEYRR-----GDDGTVDVEGEVLESDPP-RRLVH 71 (136)
T ss_pred EEEEEecCCHHHHHHHHcCchhhhheecccc-c---cc-CCcCCCeEEEEe-----CCCcccccceEEEEecCC-CeEEE
Confidence 4678999999999999999999999987622 1 22 224443333321 110112456788889888 88888
Q ss_pred EEeccCc----ceeeeEEEEEEEEcCCCCeEEEEEEEEecCCCCChhHHHHHHHHHHHHHHHHHHHHHhh
Q 036221 93 KMEASNV----GLDGSVNSLKLIDYGDDSTLVSWSFAIDPVEGASEDSIIDYLGFLYKSCINRIDSAIQK 158 (159)
Q Consensus 93 ~~~~~~~----~~~~~~~~~~l~~~~~~~t~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~e~ 158 (159)
+...... +......++.|++.+ ++|+++.+.+.-... ..+...+...+..+|++|++.+|.
T Consensus 72 ~~~~~~~~~~~~~~~~~v~~~l~~~~-~~t~l~~~~~~~~~~----~~~~~~~~~gw~~~l~~Lk~~~e~ 136 (136)
T cd08893 72 TWRAVWDPEMAAEPPSRVTFEIEPVG-DVVKLTVTHDGFPPG----SPTLEGVSGGWPAILSSLKTLLET 136 (136)
T ss_pred EEecCCCcccCCCCCEEEEEEEEecC-CcEEEEEEecCCCCc----hhHHHhhhcCHHHHHHHHHHHhcC
Confidence 8764221 123578899999976 579888776543221 135667778899999999999984
No 26
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.35 E-value=3.2e-11 Score=85.76 Aligned_cols=130 Identities=15% Similarity=0.254 Sum_probs=93.0
Q ss_pred ccceEEEEEEEEeCChHHHHHHhhcCCCCCccccccceEEEcCCCCCCCcEEEEeccccccCCCCCcceEEEEEEeeeCC
Q 036221 7 QGKWRGSVGGIVDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIRLVSGFMFPQENGERSWIKERLISMDSS 86 (159)
Q Consensus 7 ~~~~~~~~s~~I~ap~~~VW~~l~d~~~~~~W~p~v~~~~~~~g~~~~~G~~r~~~~~~~~~~~g~~~~~~e~i~~~d~~ 86 (159)
.+.-.-..+++|+||++.||++|+|..++++|.+.. .. ...+|...... +..........++++++++
T Consensus 8 ~~~~~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~~~------~~-~~~~G~~~~~~-----~~~~~~~~~~~~v~e~~p~ 75 (157)
T cd08899 8 DGGATLRFERLLPAPIEDVWAALTDPERLARWFAPG------TG-DLRVGGRVEFV-----MDDEEGPNATGTILACEPP 75 (157)
T ss_pred CCCeEEEEEEecCCCHHHHHHHHcCHHHHHhhcCCC------CC-CcccCceEEEE-----ecCCCCCccceEEEEEcCC
Confidence 344556677889999999999999999999999832 11 12344333332 1110123567789999998
Q ss_pred CCEEEEEEeccCcceeeeEEEEEEEEcCCCCeEEEEEEEEecCCCCChhHHHHHHHHHHHHHHHHHHHHHhh
Q 036221 87 SHSYDYKMEASNVGLDGSVNSLKLIDYGDDSTLVSWSFAIDPVEGASEDSIIDYLGFLYKSCINRIDSAIQK 158 (159)
Q Consensus 87 ~~~~~y~~~~~~~~~~~~~~~~~l~~~~~~~t~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~e~ 158 (159)
+++.|+...++ .....++.|++.+ ++|+|+++.++.+.. .....+......+|++|++.+|+
T Consensus 76 -~~l~~~~~~~~---~~~~~~~~l~~~~-~gT~v~~~~~~~~~~-----~~~~~~~~GW~~~L~~Lk~~~e~ 137 (157)
T cd08899 76 -RLLAFTWGEGG---GESEVRFELAPEG-DGTRLTLTHRLLDER-----FGAGAVGAGWHLCLDVLEAALEG 137 (157)
T ss_pred -cEEEEEecCCC---CCceEEEEEEEcC-CCEEEEEEEeccCch-----hhhhhhcccHHHHHHHHHHHHcC
Confidence 89999987543 3467789999976 679999887775432 24556678899999999999986
No 27
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=99.31 E-value=6.3e-11 Score=84.25 Aligned_cols=136 Identities=13% Similarity=0.167 Sum_probs=97.8
Q ss_pred EEEEEEEEeCChHHHHHHhhcCCCCCccccccceEEEcCCCCCCCcEEEEeccccccCCCCCcceEEEEEEeeeCCCCEE
Q 036221 11 RGSVGGIVDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIRLVSGFMFPQENGERSWIKERLISMDSSSHSY 90 (159)
Q Consensus 11 ~~~~s~~I~ap~~~VW~~l~d~~~~~~W~p~v~~~~~~~g~~~~~G~~r~~~~~~~~~~~g~~~~~~e~i~~~d~~~~~~ 90 (159)
.-+++++|++|+|.||++-+|++++|.|+..+.|+++.++.+ +.+... ...|-..+..-+|+...++ .++
T Consensus 71 ~v~~~V~I~kPae~vy~~W~dLe~lP~~Mkhl~SVkVlddkr----SrW~~~-----ap~g~~v~Wea~it~d~~~-e~I 140 (217)
T COG5637 71 EVEVQVTIDKPAEQVYAYWRDLENLPLWMKHLDSVKVLDDKR----SRWKAN-----APLGLEVEWEAEITKDIPG-ERI 140 (217)
T ss_pred EEEEEEEeCChHHHHHHHHHhhhhhhHHHHhhceeeccCCCc----cceeEc-----CCCCceEEEeehhhccCCC-cEE
Confidence 346778999999999999999999999999999999877643 223222 1123334555667665555 999
Q ss_pred EEEEeccCcceeeeEEEEEEEEcCCCCeEEEEEEEEecCCCCChhHHHHHH----HHHHHHHHHHHHHHHhh
Q 036221 91 DYKMEASNVGLDGSVNSLKLIDYGDDSTLVSWSFAIDPVEGASEDSIIDYL----GFLYKSCINRIDSAIQK 158 (159)
Q Consensus 91 ~y~~~~~~~~~~~~~~~~~l~~~~~~~t~v~w~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~l~~~~e~ 158 (159)
.|+...+.. + ...+.++|.+..++.|+|+-+..|.+|.+.......+++ ...++.=|++.|+..|+
T Consensus 141 ~W~Sl~Ga~-v-~NsG~VrF~~~pg~~t~V~v~lsY~~Pgg~~~a~va~~fgeepeqqI~~DL~RFk~~~e~ 210 (217)
T COG5637 141 QWESLPGAR-V-ENSGAVRFYDAPGDSTEVKVTLSYRPPGGLLGAVVAKLFGEEPEQQIQDDLERFKEYQEN 210 (217)
T ss_pred eeecCCCCc-C-CCCccEEeeeCCCCceEEEEEEEecCCccHHHHHHHHHhccchHHHHHHHHHHHHHHHHc
Confidence 999987521 2 255778999987777999999999999764443334444 45666777777777764
No 28
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.25 E-value=4.5e-10 Score=78.12 Aligned_cols=133 Identities=13% Similarity=0.178 Sum_probs=86.9
Q ss_pred EEEEEEeCChHHHHHHhhcCCCCCcccc--ccc--eEEEcCCCCCCCcEEEEeccccccCCCCCcceEEEEEEeeeCCCC
Q 036221 13 SVGGIVDAPINKVWTIVSQTKKLPEWMP--MVE--RCTDLAGDEGVPGYIRLVSGFMFPQENGERSWIKERLISMDSSSH 88 (159)
Q Consensus 13 ~~s~~I~ap~~~VW~~l~d~~~~~~W~p--~v~--~~~~~~g~~~~~G~~r~~~~~~~~~~~g~~~~~~e~i~~~d~~~~ 88 (159)
.++..|+||+++||+.++|-+...+|.+ .+. .+. .+...| |..+... ...+|......-++++++|+ +
T Consensus 3 ~~~r~i~ap~e~Vw~a~t~p~~l~~W~~p~~~~~~~~~-~d~~~G--G~~~~~~----~~~~g~~~~~~g~v~e~~p~-~ 74 (139)
T cd08894 3 VTTRVIDAPRDLVFAAWTDPEHLAQWWGPEGFTNTTHE-FDLRPG--GRWRFVM----HGPDGTDYPNRIVFLEIEPP-E 74 (139)
T ss_pred EEEEEeCCCHHHHHHHhCCHHHHhhccCcCCCcceEEE-EEecCC--CEEEEEE----ECCCCCEecceEEEEEEcCC-C
Confidence 4677899999999999999988888864 221 122 121122 2333321 01234333445689999999 9
Q ss_pred EEEEEEeccCcceeeeEEEEEEEEcCCCCeEEEEEEEEecCCCCChhHHHHHHHHHHHHHHHHHHHHHhh
Q 036221 89 SYDYKMEASNVGLDGSVNSLKLIDYGDDSTLVSWSFAIDPVEGASEDSIIDYLGFLYKSCINRIDSAIQK 158 (159)
Q Consensus 89 ~~~y~~~~~~~~~~~~~~~~~l~~~~~~~t~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~e~ 158 (159)
++.|+.... +. ....+++|++.+ ++|+|+.+..+.... .....+...+......+|++|++.+++
T Consensus 75 ~l~~t~~~~--~~-~~~v~~~~~~~~-~gT~ltl~~~~~~~~-~~~~~~~~~~~~Gw~~~l~~L~~~l~~ 139 (139)
T cd08894 75 RIVYDHGSG--PP-RFRLTVTFEEQG-GKTRLTWRQVFPTAA-ERCEKIKFGAVEGNEQTLDRLAAYLAR 139 (139)
T ss_pred EEEEEeccC--CC-cEEEEEEEEECC-CCEEEEEEEEcCCHH-HHHHHHHhCHHHHHHHHHHHHHHHHhC
Confidence 999998653 21 256789999986 789999887653221 111223456678899999999999874
No 29
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.20 E-value=4.1e-09 Score=77.20 Aligned_cols=144 Identities=15% Similarity=0.217 Sum_probs=90.2
Q ss_pred EEEEEEEEeCChHHHHHHhhcCCCCCccccccceEEEcCCCCC-CCcEEEEeccccccCCCCCcceEEEEEEeeeCCCCE
Q 036221 11 RGSVGGIVDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGDEG-VPGYIRLVSGFMFPQENGERSWIKERLISMDSSSHS 89 (159)
Q Consensus 11 ~~~~s~~I~ap~~~VW~~l~d~~~~~~W~p~v~~~~~~~g~~~-~~G~~r~~~~~~~~~~~g~~~~~~e~i~~~d~~~~~ 89 (159)
.-..+.+|++|+++||+++.|.+.+++|.|.+.++++++..+. ......... ..+|. .+ ...+...-...+.++..
T Consensus 42 ~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~~~~~~vie~~~~~~~i~~~~~~-~p~pv-s~-Rdfv~~~~~~~~~~~~~ 118 (195)
T cd08876 42 EFKAVAEVDASIEAFLALLRDTESYPQWMPNCKESRVLKRTDDNERSVYTVID-LPWPV-KD-RDMVLRSTTEQDADDGS 118 (195)
T ss_pred EEEEEEEEeCCHHHHHHHHhhhHhHHHHHhhcceEEEeecCCCCcEEEEEEEe-ccccc-CC-ceEEEEEEEEEcCCCCE
Confidence 3345567999999999999999999999999999988774322 222222221 10111 11 11222111122221233
Q ss_pred EEEEEeccC--cc-------eeeeEEEEEEEEcCCCCeEEEEEEEEecCCCCChhHHHHHHHHHHHHHHHHHHHHHh
Q 036221 90 YDYKMEASN--VG-------LDGSVNSLKLIDYGDDSTLVSWSFAIDPVEGASEDSIIDYLGFLYKSCINRIDSAIQ 157 (159)
Q Consensus 90 ~~y~~~~~~--~~-------~~~~~~~~~l~~~~~~~t~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~e 157 (159)
+.......+ .| +....+.|.+++.++++|+|++...+++...+-...+...+......++++|++++.
T Consensus 119 ~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~g~iP~~lv~~~~~~~~~~~l~~l~~~~~ 195 (195)
T cd08876 119 VTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPGGSIPGWLANAFAKDAPYNTLENLRKQLK 195 (195)
T ss_pred EEEEeecCCccCCCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 333333221 12 356778899999988889999999998875443444555667788899999998863
No 30
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=99.18 E-value=1e-09 Score=76.29 Aligned_cols=134 Identities=17% Similarity=0.247 Sum_probs=91.3
Q ss_pred EEEEeCChHHHHHHhhcCCCCCccccccceEEEcCCCCCCCcEEEEeccccccCCCCCcceEEEEEEeeeCCCCEEEEEE
Q 036221 15 GGIVDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIRLVSGFMFPQENGERSWIKERLISMDSSSHSYDYKM 94 (159)
Q Consensus 15 s~~I~ap~~~VW~~l~d~~~~~~W~p~v~~~~~~~g~~~~~G~~r~~~~~~~~~~~g~~~~~~e~i~~~d~~~~~~~y~~ 94 (159)
+..|++|+++||++|.|.+......|++.|.+...+ .-.+.++.--| |+. + ....+.++..++++.++++...
T Consensus 6 ~f~V~~p~e~Vw~~L~dpe~~a~ciPG~qs~e~~g~--e~~~~v~l~ig---~l~-~-~~~g~~~~~~v~~~~~~~~i~g 78 (146)
T COG3427 6 TFRVAAPPEAVWEFLNDPEQVAACIPGVQSVETNGD--EYTAKVKLKIG---PLK-G-TFSGRVRFVNVDEPPRSITING 78 (146)
T ss_pred eEEecCCHHHHHHHhcCHHHHHhhcCCcceeeecCC--eEEEEEEEeec---cee-E-EEEEEEEEccccCCCcEEEEEe
Confidence 567999999999999999999999999999874333 22333343322 121 1 2344667777666668877777
Q ss_pred eccCc-ceeeeEEEEEEEEcCCCCeEEEEEEEEecCC---CCChhHHHHHHHHHHHHHHHHHHHHH
Q 036221 95 EASNV-GLDGSVNSLKLIDYGDDSTLVSWSFAIDPVE---GASEDSIIDYLGFLYKSCINRIDSAI 156 (159)
Q Consensus 95 ~~~~~-~~~~~~~~~~l~~~~~~~t~v~w~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~l~~~~ 156 (159)
..+.. ++......+.+++.+++ |++.|....+.-. .+..+.+....++.....+++|++.+
T Consensus 79 ~G~~~~g~~~~~~~v~l~~~g~g-t~v~w~~~~~~gg~laqlGsr~i~~~~~kli~~~~~~l~~~l 143 (146)
T COG3427 79 SGGGAAGFADGTVDVQLEPSGEG-TRVNWFADANVGGKLAQLGSRLIDSVARKLINRFFDCLSSEL 143 (146)
T ss_pred ecccccceeeeeeEEEEEEcCCC-cEEEEEEEccccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65222 35578889999998865 9999999887532 12233455566667777777777655
No 31
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=99.17 E-value=1.9e-09 Score=75.29 Aligned_cols=134 Identities=19% Similarity=0.292 Sum_probs=86.6
Q ss_pred EEEEeCChHHHHHHhhcCCCCCccccccceEEEcCCCCCCCcEEEEeccccccCCCCCcceEEEEEEeeeCCCCE-EEEE
Q 036221 15 GGIVDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIRLVSGFMFPQENGERSWIKERLISMDSSSHS-YDYK 93 (159)
Q Consensus 15 s~~I~ap~~~VW~~l~d~~~~~~W~p~v~~~~~~~g~~~~~G~~r~~~~~~~~~~~g~~~~~~e~i~~~d~~~~~-~~y~ 93 (159)
+.+|++|+++||++|+|.+++....|++++.+..+ + .-.+..+.-.| |+. .....+-++.+.+++.+. +..+
T Consensus 2 s~~v~a~~~~vw~~l~D~~~l~~ciPG~~~~e~~~-~-~~~~~~~v~vG---~i~--~~~~g~~~~~~~~~~~~~~~~~~ 74 (140)
T PF06240_consen 2 SFEVPAPPEKVWAFLSDPENLARCIPGVESIEKVG-D-EYKGKVKVKVG---PIK--GTFDGEVRITEIDPPESYTLEFE 74 (140)
T ss_dssp EEEECS-HHHHHHHHT-HHHHHHHSTTEEEEEEEC-T-EEEEEEEEESC---CCE--EEEEEEEEEEEEETTTEEEEEEE
T ss_pred cEEecCCHHHHHHHhcCHHHHHhhCCCcEEeeecC-c-EEEEEEEEEec---cEE--EEEEEEEEEEEcCCCcceEeeee
Confidence 56899999999999999999999999999888655 3 22223332222 111 124556778888888444 4555
Q ss_pred EeccCcceeeeEEEEEEEEcCCCCeEEEEEEEEecCC---CCChhHHHHHHHHHHHHHHHHHHHHH
Q 036221 94 MEASNVGLDGSVNSLKLIDYGDDSTLVSWSFAIDPVE---GASEDSIIDYLGFLYKSCINRIDSAI 156 (159)
Q Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~~t~v~w~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~l~~~~ 156 (159)
..... ...+....+.+...++++|+|+|..+++... .+....+....++.+++.+++|++.+
T Consensus 75 g~g~~-~~~~~~~~~~~~~~~~~~T~v~~~~~~~~~G~la~~g~~~i~~~~~~l~~~f~~~l~~~l 139 (140)
T PF06240_consen 75 GRGRG-GGSSASANITLSLEDDGGTRVTWSADVEVGGPLASLGQRLIESVARRLIEQFFENLERKL 139 (140)
T ss_dssp EEECT-CCEEEEEEEEEEECCCTCEEEEEEEEEEEECHHHHC-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCc-cceEEEEEEEEEcCCCCCcEEEEEEEEEEccCHHHhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 54422 2234556666666555669999999998643 23344466666777777777777654
No 32
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.17 E-value=5.7e-09 Score=73.10 Aligned_cols=134 Identities=13% Similarity=0.163 Sum_probs=86.0
Q ss_pred EEEEEEeCChHHHHHHhhcCCCCCcccccc-ceEEE--cCCCCCCCcEEEEeccccccCC-----CCCcceEEEEEEeee
Q 036221 13 SVGGIVDAPINKVWTIVSQTKKLPEWMPMV-ERCTD--LAGDEGVPGYIRLVSGFMFPQE-----NGERSWIKERLISMD 84 (159)
Q Consensus 13 ~~s~~I~ap~~~VW~~l~d~~~~~~W~p~v-~~~~~--~~g~~~~~G~~r~~~~~~~~~~-----~g~~~~~~e~i~~~d 84 (159)
.++..|+||++.||++++|.+.+.+|.+.- -.+.. .+..+|+.-..+... +.. .|......-++++++
T Consensus 3 ~~~r~i~ap~e~Vw~a~td~~~~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~----~~~~~g~~~g~~~~~~g~v~~v~ 78 (146)
T cd08895 3 RLHRVIAAPPERVYRAFLDPDALAKWLPPDGMTGTVHEFDAREGGGFRMSLTY----FDPSVGKTTGNTDVFGGRFLELV 78 (146)
T ss_pred EEEEEECCCHHHHHHHHcCHHHHhhcCCCCCeEeEEEEEecccCCeEEEEEEc----CCccccccCCcEeeeEEEEEEEc
Confidence 467789999999999999999999998632 11211 222223222222111 000 122234556799999
Q ss_pred CCCCEEEEEEeccC--cceeeeEEEEEEEEcCCCCeEEEEEEEEecCCCCChhHHHHHHHHHHHHHHHHHHHHHhh
Q 036221 85 SSSHSYDYKMEASN--VGLDGSVNSLKLIDYGDDSTLVSWSFAIDPVEGASEDSIIDYLGFLYKSCINRIDSAIQK 158 (159)
Q Consensus 85 ~~~~~~~y~~~~~~--~~~~~~~~~~~l~~~~~~~t~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~e~ 158 (159)
|+ +++.|+..... .+ .....++.|++.+ ++|+|+++...-+. . ............+|++|++.+|+
T Consensus 79 p~-~~i~~~~~~~~~~~~-~~~~v~~~~~~~~-~~T~lt~~~~~~~~-~----~~~~~~~~GW~~~l~~L~~~le~ 146 (146)
T cd08895 79 PN-ERIVYTDVFDDPSLS-GEMTMTWTLSPVS-GGTDVTIVQSGIPD-G----IPPEDCELGWQESLANLAALVEA 146 (146)
T ss_pred CC-CEEEEEEEecCCCCC-ceEEEEEEEEecC-CCEEEEEEEeCCCc-h----hhhhHHHHHHHHHHHHHHHHhcC
Confidence 99 99999875321 12 2357889999986 68999988753211 1 12346678889999999999874
No 33
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.13 E-value=3.7e-09 Score=73.87 Aligned_cols=137 Identities=14% Similarity=0.114 Sum_probs=87.9
Q ss_pred EEEEEEeCChHHHHHHhhcCCCCCcccccc-ceEEEcCCCCCCCc-EEEEeccccccCCCCCcceEEEEEEeeeCCCCEE
Q 036221 13 SVGGIVDAPINKVWTIVSQTKKLPEWMPMV-ERCTDLAGDEGVPG-YIRLVSGFMFPQENGERSWIKERLISMDSSSHSY 90 (159)
Q Consensus 13 ~~s~~I~ap~~~VW~~l~d~~~~~~W~p~v-~~~~~~~g~~~~~G-~~r~~~~~~~~~~~g~~~~~~e~i~~~d~~~~~~ 90 (159)
..+..++||+++||+.++|-+.+.+|..-- ..+...+.+ ..+| ..+... ...+|....+.=++++++|+ +++
T Consensus 3 ~i~r~~~ap~e~Vw~a~Tdpe~l~~W~~p~~~~~~~~~~d-~r~GG~~~~~~----~~~~g~~~~~~g~~~ei~p~-~~l 76 (142)
T cd07826 3 VITREFDAPRELVFRAHTDPELVKRWWGPRGLTMTVCECD-IRVGGSYRYVH----RAPDGEEMGFHGVYHEVTPP-ERI 76 (142)
T ss_pred EEEEEECCCHHHHHHHhCCHHHHhhccCCCCCcceEEEEe-ccCCCEEEEEE----ECCCCCEecceEEEEEEcCC-CEE
Confidence 356789999999999999999988997632 111111111 2232 333331 11233333556688899999 999
Q ss_pred EEEEeccCcceeeeEEEEEEEEcCCCCeEEEEEEEEecCCCCChhHHHHHHHHHHHHHHHHHHHHHh
Q 036221 91 DYKMEASNVGLDGSVNSLKLIDYGDDSTLVSWSFAIDPVEGASEDSIIDYLGFLYKSCINRIDSAIQ 157 (159)
Q Consensus 91 ~y~~~~~~~~~~~~~~~~~l~~~~~~~t~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~e 157 (159)
.|+......+......++.|++.+ ++|+++.+..+.... .........+......+|++|++.++
T Consensus 77 ~~t~~~~~~~~~~s~v~~~l~~~~-~gT~l~l~~~~~~~~-~~~~~~~~~~~~Gw~~~l~~L~~~l~ 141 (142)
T cd07826 77 VQTEEFEGLPDGVALETVTFTELG-GRTRLTATSRYPSKE-ARDGVLASGMEEGMEESYDRLDELLA 141 (142)
T ss_pred EEEeEecCCCCCceEEEEEEEECC-CCEEEEEEEEeCCHH-HHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 888754322223467789999986 789999875543221 11123455667899999999999876
No 34
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.11 E-value=4.3e-09 Score=73.73 Aligned_cols=136 Identities=13% Similarity=0.093 Sum_probs=83.1
Q ss_pred EEEEEEeCChHHHHHHhhcCCCCCccccc----cceEEEcCCCCCCCcEEEEeccccccCCCCCcceEEEEEEeeeCCCC
Q 036221 13 SVGGIVDAPINKVWTIVSQTKKLPEWMPM----VERCTDLAGDEGVPGYIRLVSGFMFPQENGERSWIKERLISMDSSSH 88 (159)
Q Consensus 13 ~~s~~I~ap~~~VW~~l~d~~~~~~W~p~----v~~~~~~~g~~~~~G~~r~~~~~~~~~~~g~~~~~~e~i~~~d~~~~ 88 (159)
..++.|+||+++||+.++|-+.+.+|.+- +..+. .+-..| |..+... ...+|......=++++++|+ +
T Consensus 3 ~i~r~i~a~~e~Vw~a~t~pe~~~~W~~p~~~~~~~~~-~d~~~G--G~~~~~~----~~~~g~~~~~~g~v~~i~p~-~ 74 (146)
T cd08896 3 VLSRTIDAPRELVWRAWTEPELLKQWFCPKPWTTEVAE-LDLRPG--GAFRTVM----RGPDGEEFPNPGCFLEVVPG-E 74 (146)
T ss_pred EEEEEeCCCHHHHHHHcCCHHHHhccCCCCCccceEEE-EEeecC--cEEEEEE----ECCCCCEecceEEEEEEeCC-C
Confidence 35678999999999999999888888652 12222 111122 2333321 11234333456679999999 9
Q ss_pred EEEEEEeccC--cce--eeeEEEEEEEEcCCCCeEEEEEEEEecCCCCChhHHHHHHHHHHHHHHHHHHHHHhh
Q 036221 89 SYDYKMEASN--VGL--DGSVNSLKLIDYGDDSTLVSWSFAIDPVEGASEDSIIDYLGFLYKSCINRIDSAIQK 158 (159)
Q Consensus 89 ~~~y~~~~~~--~~~--~~~~~~~~l~~~~~~~t~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~e~ 158 (159)
++.|+....+ .+. .....++.|++.+ ++|+|+.+..+.... .........+......+|++|++.+|.
T Consensus 75 ~l~~t~~~~~~~~~~~~~~~~v~~~~~~~~-~gT~Ltl~~~~~~~~-~~~~~~~~~~~~GW~~~l~~L~~~l~~ 146 (146)
T cd08896 75 RLVFTDALTPGWRPAEKPFMTAIITFEDEG-GGTRYTARARHWTEA-DRKQHEEMGFHDGWGTAADQLAALAES 146 (146)
T ss_pred EEEEEEeecCCcCCCCCCcEEEEEEEEecC-CcEEEEEEEEeCCHH-HHHHHHHcCHHHHHHHHHHHHHHHHhC
Confidence 9998854311 111 1146789999976 689999764432211 001111223468899999999999873
No 35
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=99.11 E-value=9.4e-10 Score=76.05 Aligned_cols=137 Identities=15% Similarity=0.207 Sum_probs=95.3
Q ss_pred EEEEEEeCChHHHHHHhhcCCCCCccccccceEEEcCCCCCCCcEEEEeccccccCCCCCcceEEEEEEeeeCCCCEEEE
Q 036221 13 SVGGIVDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIRLVSGFMFPQENGERSWIKERLISMDSSSHSYDY 92 (159)
Q Consensus 13 ~~s~~I~ap~~~VW~~l~d~~~~~~W~p~v~~~~~~~g~~~~~G~~r~~~~~~~~~~~g~~~~~~e~i~~~d~~~~~~~y 92 (159)
+.+..|+.+|+..++++.|.+.||++.|++..+++.+..+...-+ +...|. .|-..+..-++ ..+++.+++.-
T Consensus 5 ~~s~lv~y~a~~mF~LV~dV~~YP~FlP~C~~s~v~~~~~~~l~A-~l~V~~-----k~i~e~F~Trv-~~~~~~~~I~~ 77 (146)
T COG2867 5 ERTALVPYSASQMFDLVNDVESYPEFLPWCSASRVLERNERELIA-ELDVGF-----KGIRETFTTRV-TLKPTARSIDM 77 (146)
T ss_pred EeeeeccCCHHHHHHHHHHHHhCchhccccccceEeccCcceeEE-EEEEEh-----hheeeeeeeee-eecCchhhhhh
Confidence 456778999999999999999999999999888877765433211 111111 12122333444 34455467776
Q ss_pred EEeccCcceeeeEEEEEEEEcCCCCeEEEEEEEEecCCCCChhHHHHHHHHHHHHHHHHHHHHHhh
Q 036221 93 KMEASNVGLDGSVNSLKLIDYGDDSTLVSWSFAIDPVEGASEDSIIDYLGFLYKSCINRIDSAIQK 158 (159)
Q Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~~t~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~e~ 158 (159)
...+| |++...+.|+++|.++++|+|....+|+..+.+....+..........|.++..+++..
T Consensus 78 ~l~~G--PFk~L~~~W~F~pl~~~~ckV~f~ldfeF~s~ll~~~~g~~f~~~a~~mv~aF~kRA~~ 141 (146)
T COG2867 78 KLIDG--PFKYLKGGWQFTPLSEDACKVEFFLDFEFKSRLLGALIGPVFKRLASKMVEAFEKRAKE 141 (146)
T ss_pred hhhcC--ChhhhcCceEEEECCCCceEEEEEEEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67766 56678899999999889999999999998765555555555666666666666666554
No 36
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.07 E-value=5.7e-09 Score=72.01 Aligned_cols=127 Identities=17% Similarity=0.319 Sum_probs=83.0
Q ss_pred EEEEEEeCChHHHHHHhhcCCCCCccccccce--EEEcCCCCCCCc-EEEEeccccccCCCCC-cceEEEEEEeeeCCCC
Q 036221 13 SVGGIVDAPINKVWTIVSQTKKLPEWMPMVER--CTDLAGDEGVPG-YIRLVSGFMFPQENGE-RSWIKERLISMDSSSH 88 (159)
Q Consensus 13 ~~s~~I~ap~~~VW~~l~d~~~~~~W~p~v~~--~~~~~g~~~~~G-~~r~~~~~~~~~~~g~-~~~~~e~i~~~d~~~~ 88 (159)
..++.|+||+++||+.++|-+.+.+|+..... +...+. +..+| ..+... ...+|. .....=++++++|+ +
T Consensus 3 ~~~~~~~ap~e~Vw~a~td~e~~~~W~~~~~~~~~~~~~~-d~~~GG~~~~~~----~~~~g~~~~~~~g~~~ei~p~-~ 76 (133)
T cd08897 3 TVETTVDAPIEKVWEAWTTPEHITKWNFASDDWHCPSAEN-DLRVGGKFSYRM----EAKDGSMGFDFEGTYTEVEPH-K 76 (133)
T ss_pred EEEEEeCCCHHHHHHHhCCHHHHhhCCCCCCCcccceeee-cCCcCCEEEEEE----EcCCCCcccccceEEEEECCC-C
Confidence 45778999999999999999999999643211 111111 12343 333321 011222 12345678899999 9
Q ss_pred EEEEEEeccCcceeeeEEEEEEEEcCCCCeEEEEEEEEecCCCCChhHHHHHHHHHHHHHHHHHHHHHhh
Q 036221 89 SYDYKMEASNVGLDGSVNSLKLIDYGDDSTLVSWSFAIDPVEGASEDSIIDYLGFLYKSCINRIDSAIQK 158 (159)
Q Consensus 89 ~~~y~~~~~~~~~~~~~~~~~l~~~~~~~t~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~e~ 158 (159)
++.|+... ....++.|++.+ ++|+|+.+ +.+... ............+|++|++.+|+
T Consensus 77 ~l~~~~~~------~~~v~~~l~~~~-~gT~l~l~--~~~~~~----~~~~~~~~GW~~~l~~L~~~le~ 133 (133)
T cd08897 77 LIEYTMED------GREVEVEFTEEG-DGTKVVET--FDAENE----NPVEMQRQGWQAILDNFKKYVES 133 (133)
T ss_pred EEEEEcCC------CCEEEEEEEECC-CCEEEEEE--ECCCCC----CcHHHHHHHHHHHHHHHHHHhhC
Confidence 99998643 146789999976 67999976 433221 12345667889999999999985
No 37
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.06 E-value=2.2e-08 Score=69.89 Aligned_cols=134 Identities=12% Similarity=0.116 Sum_probs=87.0
Q ss_pred EEEEEEeCChHHHHHHhhcCCCCCccccc---c--ceEEEcCCCCCCCcEEEEeccccccCCCCCcceEEEEEEeeeCCC
Q 036221 13 SVGGIVDAPINKVWTIVSQTKKLPEWMPM---V--ERCTDLAGDEGVPGYIRLVSGFMFPQENGERSWIKERLISMDSSS 87 (159)
Q Consensus 13 ~~s~~I~ap~~~VW~~l~d~~~~~~W~p~---v--~~~~~~~g~~~~~G~~r~~~~~~~~~~~g~~~~~~e~i~~~d~~~ 87 (159)
..+..|+||++.||+.++|-+.+.+|... . ..+. .+-.+| |..+.... ..+|......=++++++|+
T Consensus 3 ~i~r~~~ap~e~Vw~a~tdp~~l~~W~~~~~~~~~~~~~-~d~~~G--g~~~~~~~----~~~g~~~~~~g~~~~~~p~- 74 (143)
T cd08900 3 TLERTYPAPPERVFAAWSDPAARARWFVPSPDWTVLEDE-FDFRVG--GREVSRGG----PKGGPEITVEARYHDIVPD- 74 (143)
T ss_pred EEEEEeCCCHHHHHHHhcCHHHHHhcCCCCCCCceeeeE-EecCCC--CEEEEEEE----CCCCCEEeeeEEEEEecCC-
Confidence 35678999999999999999999999853 1 2222 121122 23333321 1244444666788999999
Q ss_pred CEEEEEEecc--CcceeeeEEEEEEEEcCCCCeEEEEEEEEecCCCCChhHHHHHHHHHHHHHHHHHHHHHhh
Q 036221 88 HSYDYKMEAS--NVGLDGSVNSLKLIDYGDDSTLVSWSFAIDPVEGASEDSIIDYLGFLYKSCINRIDSAIQK 158 (159)
Q Consensus 88 ~~~~y~~~~~--~~~~~~~~~~~~l~~~~~~~t~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~e~ 158 (159)
+++.|+.... ..+......++.|++.+ ++|+|+.+......... ............+|++|++.+++
T Consensus 75 ~~l~~t~~~~~~~~~~~~s~v~~~l~~~~-~gT~l~~~~~~~~~~~~---~~~~~~~~GW~~~l~~L~~~l~~ 143 (143)
T cd08900 75 ERIVYTYTMHIGGTLLSASLATVEFAPEG-GGTRLTLTEQGAFLDGD---DDPAGREQGTAALLDNLAAELER 143 (143)
T ss_pred ceEEEEEeeccCCccccceEEEEEEEECC-CCEEEEEEEEEeccccc---chhhhHHHHHHHHHHHHHHHHhC
Confidence 9998887532 11222356789999986 67999988664322111 12345667888999999999874
No 38
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.05 E-value=9e-09 Score=71.35 Aligned_cols=127 Identities=5% Similarity=0.025 Sum_probs=83.0
Q ss_pred EEEEEEeCChHHHHHHhhcCCCCCccccccceEEEcCCCCCCCc-EEEEeccccccCCCCCcceEEEEEEeeeCCCCEEE
Q 036221 13 SVGGIVDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPG-YIRLVSGFMFPQENGERSWIKERLISMDSSSHSYD 91 (159)
Q Consensus 13 ~~s~~I~ap~~~VW~~l~d~~~~~~W~p~v~~~~~~~g~~~~~G-~~r~~~~~~~~~~~g~~~~~~e~i~~~d~~~~~~~ 91 (159)
.+++.|+||+++||+.++|-+.+.+|.+.-.+.+. .+| ..+... .+.++ ...-++++++|+ +++.
T Consensus 3 ~~~~~i~ap~e~Vw~a~t~p~~l~~W~~~~~~~~~------~~Gg~~~~~~----~~~~~---~~~g~~~~~~p~-~~l~ 68 (136)
T cd08901 3 KTAMLIRRPVAEVFEAFVDPEITTKFWFTGSSGRL------EEGKTVTWDW----EMYGA---SVPVNVLEIEPN-KRIV 68 (136)
T ss_pred eEEEEecCCHHHHHHHhcCHHHhccccccCCCccc------cCCCEEEEEE----EccCC---ceEEEEEEEcCC-CEEE
Confidence 56789999999999999999999998543222221 222 222211 12222 345588899999 9999
Q ss_pred EEEeccCcceeeeEEEEEEEEcCCCCeEEEEEEEEecCCCCChhHHH--HHHHHHHHHHHHHHHHHHhh
Q 036221 92 YKMEASNVGLDGSVNSLKLIDYGDDSTLVSWSFAIDPVEGASEDSII--DYLGFLYKSCINRIDSAIQK 158 (159)
Q Consensus 92 y~~~~~~~~~~~~~~~~~l~~~~~~~t~v~w~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~l~~~~e~ 158 (159)
|+..... .....+++|++.++++|+++.+-.. .+. ...+.+. .........+|++|+..+|.
T Consensus 69 ~~w~~~~---~~s~v~~~l~~~~~ggT~ltl~~~~-~~~-~~~~~~~~~~~~~~GW~~~L~~L~~~le~ 132 (136)
T cd08901 69 IEWGDPG---EPTTVEWTFEELDDGRTFVTITESG-FPG-TDDEGLKQALGSTEGWTLVLAGLKAYLEH 132 (136)
T ss_pred EEecCCC---CCEEEEEEEEECCCCcEEEEEEECC-CCC-CcHHHHHHHhcCCCCHHHHHHHHHHHHhc
Confidence 9876421 1356789999987578999877432 221 1111121 22347888899999999986
No 39
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=99.03 E-value=3.2e-08 Score=69.55 Aligned_cols=133 Identities=13% Similarity=0.122 Sum_probs=82.4
Q ss_pred EEEEEEeCChHHHHHHhhcCCCCCccccc-c-------ceEEEcCCCCCCCcEEEEeccccccCCCCCcceEEEEEEeee
Q 036221 13 SVGGIVDAPINKVWTIVSQTKKLPEWMPM-V-------ERCTDLAGDEGVPGYIRLVSGFMFPQENGERSWIKERLISMD 84 (159)
Q Consensus 13 ~~s~~I~ap~~~VW~~l~d~~~~~~W~p~-v-------~~~~~~~g~~~~~G~~r~~~~~~~~~~~g~~~~~~e~i~~~d 84 (159)
..+++|+||+++||+.++| .+.+|.+- - ..|+. +..+| |..+ .. ..+|. ....=++++++
T Consensus 3 ~~~~~i~Ap~e~Vw~a~t~--~l~~W~~p~~~~~~~~~~~~~~-d~~~G--G~~~-~~-----~~~g~-~~~~g~v~~v~ 70 (149)
T cd08891 3 RKSVTVPAPPERAFEVFTE--GFGAWWPPEYHFVFSPGAEVVF-EPRAG--GRWY-EI-----GEDGT-ECEWGTVLAWE 70 (149)
T ss_pred EEEEEecCCHHHHHHHHHh--chhhccCCCcccccCCCccEEE-cccCC--cEEE-Ee-----cCCCc-EeceEEEEEEc
Confidence 4678999999999999999 46677642 1 22332 21122 2233 22 11332 22346788999
Q ss_pred CCCCEEEEEEeccC--cce--eeeEEEEEEEEcCCCCeEEEEEEEEecCCCC--ChhHHHHHHHHHHHHHHHHHHHHHhh
Q 036221 85 SSSHSYDYKMEASN--VGL--DGSVNSLKLIDYGDDSTLVSWSFAIDPVEGA--SEDSIIDYLGFLYKSCINRIDSAIQK 158 (159)
Q Consensus 85 ~~~~~~~y~~~~~~--~~~--~~~~~~~~l~~~~~~~t~v~w~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~l~~~~e~ 158 (159)
|+ +++.|+..... .+. .....++.|++.++++|+|+.+...-...+. ............-..+|++|++.+|+
T Consensus 71 p~-~~l~~tw~~~~~~~~~~~~~t~vt~~l~~~~~~gT~ltl~~~~~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~l~~ 149 (149)
T cd08891 71 PP-SRLVFTWQINADWRPDPDKASEVEVRFEAVGAEGTRVELEHRGFERHGDGWEAAAMRMGYDGGWPLLLERYAAAAEK 149 (149)
T ss_pred CC-CEEEEEeccCCCcCcCCCCceEEEEEEEECCCCCeEEEEEEecccccCcchhhHHHHhcccCcHHHHHHHHHHHhcC
Confidence 99 99988875211 111 1357899999986468999877654322110 11223445567788899999999885
No 40
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=99.00 E-value=7e-09 Score=70.10 Aligned_cols=122 Identities=11% Similarity=0.219 Sum_probs=81.7
Q ss_pred eCChHHHHHHhhcCCCCCccccccceEEEcCCCCCCCcEEEEeccccccCCCCCcceEEEEEEeeeCCCCEEEEEEeccC
Q 036221 19 DAPINKVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIRLVSGFMFPQENGERSWIKERLISMDSSSHSYDYKMEASN 98 (159)
Q Consensus 19 ~ap~~~VW~~l~d~~~~~~W~p~v~~~~~~~g~~~~~G~~r~~~~~~~~~~~g~~~~~~e~i~~~d~~~~~~~y~~~~~~ 98 (159)
+||+++||++++|-+.+.+|.+ ...+. .+ ..+|...... . .+|......-++++++|+ +++.|+.....
T Consensus 1 ~ap~e~Vw~a~t~~~~~~~W~~-~~~~~-~~---~~~Gg~~~~~----~-~~g~~~~~~~~v~~~~p~-~~i~~~~~~~~ 69 (124)
T PF08327_consen 1 DAPPERVWEALTDPEGLAQWFT-TSEAE-MD---FRPGGSFRFM----D-PDGGEFGFDGTVLEVEPP-ERIVFTWRMPD 69 (124)
T ss_dssp SSSHHHHHHHHHSHHHHHHHSE-EEEEE-EE---CSTTEEEEEE----E-TTSEEEEEEEEEEEEETT-TEEEEEEEEET
T ss_pred CcCHHHHHHHHCCHhHHhhccC-CCcce-ee---eecCCEEEEE----e-cCCCCceeeEEEEEEeCC-EEEEEEEEccC
Confidence 6999999999999999999922 11111 11 1334333232 1 234444555669999999 88999976433
Q ss_pred cc-eeeeEEEEEEEEcCCCCeEEEEEEEEecCCCCChhHHHHH-HHHHHHHHHHHHHHHHh
Q 036221 99 VG-LDGSVNSLKLIDYGDDSTLVSWSFAIDPVEGASEDSIIDY-LGFLYKSCINRIDSAIQ 157 (159)
Q Consensus 99 ~~-~~~~~~~~~l~~~~~~~t~v~w~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~l~~~~e 157 (159)
.+ ......+++|++ .+++|+|+.+..--... ..... +......+|++|++.||
T Consensus 70 ~~~~~~~~v~~~~~~-~~~~T~l~~~~~~~~~~-----~~~~~~~~~gw~~~l~~L~~~lE 124 (124)
T PF08327_consen 70 DPDGPESRVTFEFEE-EGGGTRLTLTHSGFPDD-----DEEEEGMEQGWEQMLDRLKAYLE 124 (124)
T ss_dssp SSSCEEEEEEEEEEE-ETTEEEEEEEEEEEHSH-----HHHHHCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCceEEEEEEEE-cCCcEEEEEEEEcCCcc-----HHHHHHHHHHHHHHHHHHHHHhC
Confidence 22 345788999999 56789999887433321 12233 77899999999999987
No 41
>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins. This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m
Probab=98.83 E-value=3.7e-07 Score=62.45 Aligned_cols=121 Identities=12% Similarity=0.146 Sum_probs=78.6
Q ss_pred EEEEEEeCChHHHHHHhhcCCCCCccccccceEEEcCCCCCCCcEEEEeccccccCCCCCcceEEEEEEeeeCCCCEEEE
Q 036221 13 SVGGIVDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIRLVSGFMFPQENGERSWIKERLISMDSSSHSYDY 92 (159)
Q Consensus 13 ~~s~~I~ap~~~VW~~l~d~~~~~~W~p~v~~~~~~~g~~~~~G~~r~~~~~~~~~~~g~~~~~~e~i~~~d~~~~~~~y 92 (159)
..++.|+||+++||+.++|-+.+.+|.....+.+ ..+| |..+.. +| .+.-++++++|+ ++++|
T Consensus 3 ~~~r~i~ap~e~Vw~A~T~~e~l~~W~~~~~~~d---~~~G--G~~~~~--------~g---~~~g~~~~i~p~-~~l~~ 65 (126)
T cd08892 3 SLTETFQVPAEELYEALTDEERVQAFTRSPAKVD---AKVG--GKFSLF--------GG---NITGEFVELVPG-KKIVQ 65 (126)
T ss_pred EEEEEECCCHHHHHHHHCCHHHHHhhcCCCceec---CCCC--CEEEEe--------CC---ceEEEEEEEcCC-CEEEE
Confidence 4577899999999999999888888875333222 1122 233322 22 235578899998 88888
Q ss_pred EEeccCcce-eeeEEEEEEEEcCCCCeEEEEEEEEecCCCCChhHHHHHHHHHHH-HHHHHHHHHHh
Q 036221 93 KMEASNVGL-DGSVNSLKLIDYGDDSTLVSWSFAIDPVEGASEDSIIDYLGFLYK-SCINRIDSAIQ 157 (159)
Q Consensus 93 ~~~~~~~~~-~~~~~~~~l~~~~~~~t~v~w~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~~e 157 (159)
+......+. .....++.|++.+ ++|+|+.+...-+.. .. ..+...-. .++++|++.++
T Consensus 66 ~w~~~~~~~~~~s~v~~~l~~~~-~gT~ltl~~~g~~~~-----~~-~~~~~GW~~~~~~~l~~~~~ 125 (126)
T cd08892 66 KWRFKSWPEGHYSTVTLTFTEKD-DETELKLTQTGVPAG-----EE-ERTREGWERYYFESIKQTFG 125 (126)
T ss_pred EEEcCCCCCCCcEEEEEEEEECC-CCEEEEEEEECCCCc-----hH-HHHHhhHHHHHHHHHHHHhC
Confidence 776422221 2366889999974 679988775543321 12 33445555 47899998875
No 42
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=98.69 E-value=8.6e-07 Score=62.53 Aligned_cols=136 Identities=11% Similarity=0.172 Sum_probs=80.5
Q ss_pred EEEEEEeCChHHHHHHhhcCCCCCccccccceEEEcCCCCCCCcEEEEeccccccCCCCCcceEEEEEEeeeCCCCEEEE
Q 036221 13 SVGGIVDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIRLVSGFMFPQENGERSWIKERLISMDSSSHSYDY 92 (159)
Q Consensus 13 ~~s~~I~ap~~~VW~~l~d~~~~~~W~p~v~~~~~~~g~~~~~G~~r~~~~~~~~~~~g~~~~~~e~i~~~d~~~~~~~y 92 (159)
..+..|+||+++||+.++|-+.+.+|.. -.-++ .+...++-...+ .. ..+|......-++++++|+ +++.|
T Consensus 11 ~~er~i~aP~e~Vf~A~Tdpe~l~~W~~-~~~~~-~d~r~gg~~~~~-~~-----~~~g~~~~~~~~~~~v~p~-~rIv~ 81 (149)
T COG3832 11 EIERLIDAPPEKVFEALTDPELLARWFM-PGGAE-FDARTGGGERVR-FR-----GPDGPVHSFEGEYLEVVPP-ERIVF 81 (149)
T ss_pred EEEEeecCCHHHHHHHhcCHHHHHhhcC-CCCCc-cceecCCceEEe-ee-----cCCCCeeecceEEEEEcCC-cEEEE
Confidence 4566899999999999999999999987 32111 111111111112 21 1233334667889999999 98888
Q ss_pred EEeccC--cceeeeEEEEEEEEcCCCC-eEEEEEEEEecCCCCChhHHHHHHHHHHHHHHHHHHHHHhh
Q 036221 93 KMEASN--VGLDGSVNSLKLIDYGDDS-TLVSWSFAIDPVEGASEDSIIDYLGFLYKSCINRIDSAIQK 158 (159)
Q Consensus 93 ~~~~~~--~~~~~~~~~~~l~~~~~~~-t~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~e~ 158 (159)
+..... .+......++.|.+..+++ |++.......... .........+......++++|++.++.
T Consensus 82 tw~~~~~~~~~~~~~v~~~l~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~Gw~~~~~~l~~~l~~ 149 (149)
T COG3832 82 TWDFDEDGEPFLKSLVTITLTPEDDGGTTTLVRTSGGGFLE-DEDQKLGMGMEEGWGQLLDNLKALLEA 149 (149)
T ss_pred EeccCCCCCcccCceEEEEEEEecCCCcEEEEEEeeccccc-hhHHHhCcchhhhHHHHHHHHHHhhcC
Confidence 887543 2223466788888866553 3333332221111 111111122477889999999988763
No 43
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=98.63 E-value=7.4e-07 Score=61.59 Aligned_cols=123 Identities=9% Similarity=0.099 Sum_probs=74.7
Q ss_pred EeCChHHHHHHhhcCCCCCccccccceEEEcCCCCCCCc-EEEEeccccccCCCCCcceEEEEEEeeeCCCCEEEEEEec
Q 036221 18 VDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPG-YIRLVSGFMFPQENGERSWIKERLISMDSSSHSYDYKMEA 96 (159)
Q Consensus 18 I~ap~~~VW~~l~d~~~~~~W~p~v~~~~~~~g~~~~~G-~~r~~~~~~~~~~~g~~~~~~e~i~~~d~~~~~~~y~~~~ 96 (159)
++||++.||+.++|-+.+.+|.-. ..++ ++ ..+| ..+.+. + .+.=++++++|+ +++.|+...
T Consensus 1 f~ap~e~Vw~A~Tdp~~l~~w~~~-~~~~-~d---~~~GG~f~~~~--------~---~~~G~~~ev~pp-~rlv~tw~~ 63 (132)
T PTZ00220 1 FYVPPEVLYNAFLDAYTLTRLSLG-SPAE-MD---AKVGGKFSLFN--------G---SVEGEFTELEKP-KKIVQKWRF 63 (132)
T ss_pred CCCCHHHHHHHHcCHHHHHHHhcC-CCcc-cc---CCcCCEEEEec--------C---ceEEEEEEEcCC-CEEEEEEec
Confidence 479999999999998888888421 1222 12 2333 333332 1 234488899999 888888764
Q ss_pred cC-cceeeeEEEEEEEEcCCCCeEEEEEEE-EecCCCCChhHHHHHHHHHHHH-HHHHHHHHHh
Q 036221 97 SN-VGLDGSVNSLKLIDYGDDSTLVSWSFA-IDPVEGASEDSIIDYLGFLYKS-CINRIDSAIQ 157 (159)
Q Consensus 97 ~~-~~~~~~~~~~~l~~~~~~~t~v~w~~~-~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~~~e 157 (159)
.. .+-.....++.|++.++++|+|+.+.. +..............+...... .+++|++.++
T Consensus 64 ~~~~~~~~s~vt~~~~~~~~g~T~lt~~~~g~~~~~~~~~~~~~~~~~~GW~~~~ld~L~~~l~ 127 (132)
T PTZ00220 64 RDWEEDVYSKVTIEFRAVEEDHTELKLTQTGIPSLDKFGNGGCLERCRNGWTQNFLDRFEKILG 127 (132)
T ss_pred CCCCCCCceEEEEEEEeCCCCcEEEEEEEecCccccccCCCchhhHHHhChHHHHHHHHHHHhC
Confidence 32 121125689999997667899998866 3221111111123445556666 5888887764
No 44
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=98.58 E-value=1.1e-05 Score=59.77 Aligned_cols=142 Identities=12% Similarity=0.074 Sum_probs=88.9
Q ss_pred EEEeCChHHHHHHhhcCCCCCccccccceEEEcCCCCCCCcEEEEeccccccCCCCCcceEEEEEEeeeCCCCEEEEEEe
Q 036221 16 GIVDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIRLVSGFMFPQENGERSWIKERLISMDSSSHSYDYKME 95 (159)
Q Consensus 16 ~~I~ap~~~VW~~l~d~~~~~~W~p~v~~~~~~~g~~~~~G~~r~~~~~~~~~~~g~~~~~~e~i~~~d~~~~~~~y~~~ 95 (159)
.+|++|+++||++|.|..+.++|.+.+.++++++..+....-++.......|........+.-+....+.+...+..+-+
T Consensus 51 ~~v~as~~~v~~ll~D~~~r~~Wd~~~~~~~vl~~~~~d~~i~y~~~~~Pwp~~~~~RDfV~l~~~~~~~~~~vi~~~SV 130 (205)
T cd08874 51 GVIKAPLATVWKAVKDPRTRFLYDTMIKTARIHKTFTEDICLVYLVHETPLCLLKQPRDFCCLQVEAKEGELSVVACQSV 130 (205)
T ss_pred EEEcCCHHHHHHHHhCcchhhhhHHhhhheeeeeecCCCeEEEEEEecCCCCCCCCCCeEEEEEEEEECCCcEEEEEEec
Confidence 37899999999999999999999999999987774333344445443221111001112222232223333223222222
Q ss_pred cc-Cc--------ceeeeEEEEEEEEc---CCCCeEEEEEEEEecCCCCChhHHHHHHHHHHHHHHHHHHHHHh
Q 036221 96 AS-NV--------GLDGSVNSLKLIDY---GDDSTLVSWSFAIDPVEGASEDSIIDYLGFLYKSCINRIDSAIQ 157 (159)
Q Consensus 96 ~~-~~--------~~~~~~~~~~l~~~---~~~~t~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~e 157 (159)
.. .. ......+.|.++|. +++.|+|++....++-.|.....+...+-..--.+++.|+..++
T Consensus 131 ~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPggg~iP~~l~N~~~~~~p~~~~~~~~~~~ 204 (205)
T cd08874 131 YDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALCGPDVPAQLLSSLSKRQPLVIARLALFLE 204 (205)
T ss_pred ccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCCCCCCCHHHHhHHHHhccHHHHHHHHHhh
Confidence 22 11 13467889999998 87889999999999874555666666665666677777776665
No 45
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=98.37 E-value=4.9e-05 Score=56.56 Aligned_cols=143 Identities=15% Similarity=0.210 Sum_probs=85.6
Q ss_pred EEEEEeCChHHHH-HHhhcCCCCCccccccceEEEcCCCCCCCcEEEEec-cccccCC-CCCcceEEEEEEeeeCCCCEE
Q 036221 14 VGGIVDAPINKVW-TIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIRLVS-GFMFPQE-NGERSWIKERLISMDSSSHSY 90 (159)
Q Consensus 14 ~s~~I~ap~~~VW-~~l~d~~~~~~W~p~v~~~~~~~g~~~~~G~~r~~~-~~~~~~~-~g~~~~~~e~i~~~d~~~~~~ 90 (159)
...+|++|++.++ .++.|.++.++|++.+.++++++--....--++... .. |.. -.....+.-+...-+.++..+
T Consensus 53 ~e~~i~~~~~~l~~~l~~d~e~~~~W~~~~~~~~vl~~id~~~~i~y~~~~p~--p~~~vs~RD~V~~~~~~~~~~~~~~ 130 (209)
T cd08905 53 LEVVVDQPLDNLYSELVDRMEQMGEWNPNVKEVKILQRIGKDTLITHEVAAET--AGNVVGPRDFVSVRCAKRRGSTCVL 130 (209)
T ss_pred EEEEecCCHHHHHHHHHhchhhhceecccchHHHHHhhcCCCceEEEEEeccC--CCCccCccceEEEEEEEEcCCcEEE
Confidence 3457899999999 677799999999999988876553211111122221 10 100 011223333333333332222
Q ss_pred -EEEEeccCc-------ceeeeEEEEEEEEcCC--CCeEEEEEEEEecCCCCChhHHHHHHHHHHHHHHHHHHHHHhh
Q 036221 91 -DYKMEASNV-------GLDGSVNSLKLIDYGD--DSTLVSWSFAIDPVEGASEDSIIDYLGFLYKSCINRIDSAIQK 158 (159)
Q Consensus 91 -~y~~~~~~~-------~~~~~~~~~~l~~~~~--~~t~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~e~ 158 (159)
......... ......+.|.|+|.++ ++|+++|....++.+.+-.......+....-..+.+|+++++.
T Consensus 131 ~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~iP~~lvN~~~~~~~~~~~~~Lr~~~~~ 208 (209)
T cd08905 131 AGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGWLPKSIINQVLSQTQVDFANHLRQRMAS 208 (209)
T ss_pred EEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCCCCHHHHHHHhHHhHHHHHHHHHHHHhc
Confidence 222222111 1356778899999865 7899999999998753333345556677888889999998864
No 46
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=98.37 E-value=2.8e-05 Score=57.99 Aligned_cols=142 Identities=11% Similarity=0.174 Sum_probs=86.3
Q ss_pred EEEEEEeCChHHHHHHhhcCCCCCccccccceEEEcCCCC--CCCcEEEEeccccccCCCCCcceEEE--EEEeeeCCCC
Q 036221 13 SVGGIVDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGDE--GVPGYIRLVSGFMFPQENGERSWIKE--RLISMDSSSH 88 (159)
Q Consensus 13 ~~s~~I~ap~~~VW~~l~d~~~~~~W~p~v~~~~~~~g~~--~~~G~~r~~~~~~~~~~~g~~~~~~e--~i~~~d~~~~ 88 (159)
.....|++|++.+.+++.|.+.+++|.|.+.+++.+.... ..+. ...... |..-+....+.. .+...+.+ .
T Consensus 49 k~e~~i~~~~~~~~~vl~d~~~~~~W~p~~~~~~~l~~~~~~~~v~--y~~~~~--PwPv~~RD~v~~~~~~~~~~~~-~ 123 (215)
T cd08877 49 RMEGEIDGPLFNLLALLNEVELYKTWVPFCIRSKKVKQLGRADKVC--YLRVDL--PWPLSNREAVFRGFGVDRLEEN-G 123 (215)
T ss_pred EEEEEecCChhHeEEEEehhhhHhhhcccceeeEEEeecCCceEEE--EEEEeC--ceEecceEEEEEEEEEeeeccC-C
Confidence 3455789999999999999999999999987776554321 1111 111111 221111111111 11112122 3
Q ss_pred EEEEEE--ecc------------C------cceeeeEEEEEEEEcCCCCeEEEEEEEEecCCCCChhHHHHHH-HHHHHH
Q 036221 89 SYDYKM--EAS------------N------VGLDGSVNSLKLIDYGDDSTLVSWSFAIDPVEGASEDSIIDYL-GFLYKS 147 (159)
Q Consensus 89 ~~~y~~--~~~------------~------~~~~~~~~~~~l~~~~~~~t~v~w~~~~~~~~~~~~~~~~~~~-~~~~~~ 147 (159)
.+.... ... + .......+.|.|+|.++++|.+++....+|...+....+..++ ......
T Consensus 124 ~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~~~~DP~g~~IP~~liN~~~k~~~~~ 203 (215)
T cd08877 124 QIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFVANVDPKMSLVPKSLLNFVARKFAGL 203 (215)
T ss_pred CEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEEEEcCCCcccCCHHHHHHHHHHHHHH
Confidence 322211 110 0 1124577889999999999999999988876543555555544 567779
Q ss_pred HHHHHHHHHhhC
Q 036221 148 CINRIDSAIQKV 159 (159)
Q Consensus 148 ~l~~l~~~~e~~ 159 (159)
++.+|++.+++|
T Consensus 204 ~~~~l~k~~~~~ 215 (215)
T cd08877 204 LFEKIQKAAKNV 215 (215)
T ss_pred HHHHHHHHHhcC
Confidence 999999999875
No 47
>COG4276 Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=0.0001 Score=50.44 Aligned_cols=113 Identities=18% Similarity=0.160 Sum_probs=77.4
Q ss_pred EEEEEeCChHHHHHHhhcCCCCCccccccceEEEcCCCCCCCcEEEEeccccccCCCCCcceEEEEEEe--eeCCCCEEE
Q 036221 14 VGGIVDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIRLVSGFMFPQENGERSWIKERLIS--MDSSSHSYD 91 (159)
Q Consensus 14 ~s~~I~ap~~~VW~~l~d~~~~~~W~p~v~~~~~~~g~~~~~G~~r~~~~~~~~~~~g~~~~~~e~i~~--~d~~~~~~~ 91 (159)
....|+||.|.||++.+.-.+++.-.|--. +..-+|.+-..|+ |...++ .|...+......-++++ +|+. .+++
T Consensus 6 ~~~~i~aP~E~VWafhsrpd~lq~LTppw~-VV~p~g~eitqgt-ri~m~l-~pfglp~~~tW~Arhte~~~d~~-~~Ft 81 (153)
T COG4276 6 YRTTITAPHEMVWAFHSRPDALQRLTPPWI-VVLPLGSEITQGT-RIAMGL-TPFGLPAGLTWVARHTESGFDNG-SRFT 81 (153)
T ss_pred EeeEecCCHHHHhhhhcCccHHHhcCCCcE-EeccCCCccccee-eeeecc-eeecCCCCceEEEEeeecccCCc-ceee
Confidence 346799999999999998888877666444 2222232333332 333222 12222223566777777 8887 7777
Q ss_pred EEEeccCcceeeeEEEEEEEEcCCCCeEEEEEEEEecCCC
Q 036221 92 YKMEASNVGLDGSVNSLKLIDYGDDSTLVSWSFAIDPVEG 131 (159)
Q Consensus 92 y~~~~~~~~~~~~~~~~~l~~~~~~~t~v~w~~~~~~~~~ 131 (159)
=..+.+++|..+..+++++.+.+ ++|.++=...|+++.+
T Consensus 82 Dv~i~gPfp~~~WrHtH~F~~eg-g~TvliD~Vsye~p~g 120 (153)
T COG4276 82 DVCITGPFPALNWRHTHNFVDEG-GGTVLIDSVSYELPAG 120 (153)
T ss_pred eeeecCCccceeeEEEeeeecCC-CcEEEEeeEEeeccCc
Confidence 67777777766899999999986 6899999999998865
No 48
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=98.27 E-value=0.00024 Score=52.83 Aligned_cols=141 Identities=13% Similarity=0.146 Sum_probs=82.4
Q ss_pred EEEEEeCChHHHH-HHhhcCCCCCccccccceEEEcCCCCCCCcEEEEeccccccCC---CCCcceEEEEEEeeeCCCCE
Q 036221 14 VGGIVDAPINKVW-TIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIRLVSGFMFPQE---NGERSWIKERLISMDSSSHS 89 (159)
Q Consensus 14 ~s~~I~ap~~~VW-~~l~d~~~~~~W~p~v~~~~~~~g~~~~~G~~r~~~~~~~~~~---~g~~~~~~e~i~~~d~~~~~ 89 (159)
...+|++|++.++ +++.|.+..++|++.+.++++++-.....--++.+.. |.. -.....+.-+-..-+.+ ..
T Consensus 53 ~~~~v~~~~~~l~~~ll~D~~~~~~W~~~~~~~~vi~~~~~~~~i~Y~v~~---p~~~~pv~~RDfV~~r~~~~~~~-~~ 128 (209)
T cd08906 53 LKAFMQCPAELVYQEVILQPEKMVLWNKTVSACQVLQRVDDNTLVSYDVAA---GAAGGVVSPRDFVNVRRIERRRD-RY 128 (209)
T ss_pred EEEEEcCCHHHHHHHHHhChhhccccCccchhhhheeeccCCcEEEEEEcc---ccccCCCCCCceEEEEEEEecCC-cE
Confidence 3456899999998 6899999999999999988766532111111222221 110 01112333333332333 22
Q ss_pred E--EEEEeccCcc-------eeeeEEEEEEEE--cCCCCeEEEEEEEEecCCCCChhHHHHHHHHHHHHHHHHHHHHHhh
Q 036221 90 Y--DYKMEASNVG-------LDGSVNSLKLID--YGDDSTLVSWSFAIDPVEGASEDSIIDYLGFLYKSCINRIDSAIQK 158 (159)
Q Consensus 90 ~--~y~~~~~~~~-------~~~~~~~~~l~~--~~~~~t~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~e~ 158 (159)
+ ..++.....| ..+...-+.+.+ .+++.|+++|....++.+.+-.-.....+....-..+.+|+++++.
T Consensus 129 i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G~lP~~lvN~~~~~~~~~~~~~LR~~~~~ 208 (209)
T cd08906 129 VSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLKGRLPRYLIHQSLAATMFEFASHLRQRIRD 208 (209)
T ss_pred EEEEEEEecCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2 2233322222 222333355555 5677899999999988753333345667777888889999998864
No 49
>COG4891 Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=8.8e-06 Score=51.96 Aligned_cols=86 Identities=9% Similarity=0.012 Sum_probs=71.9
Q ss_pred CcceEEEEEEeeeCCCCEEEEEEeccCcceeeeEEEEEEEEcCCCCeEEEEEEEEecCC-CCChhHHHHHHHHHHHHHHH
Q 036221 72 ERSWIKERLISMDSSSHSYDYKMEASNVGLDGSVNSLKLIDYGDDSTLVSWSFAIDPVE-GASEDSIIDYLGFLYKSCIN 150 (159)
Q Consensus 72 ~~~~~~e~i~~~d~~~~~~~y~~~~~~~~~~~~~~~~~l~~~~~~~t~v~w~~~~~~~~-~~~~~~~~~~~~~~~~~~l~ 150 (159)
.+..++.+|+.+.|. +.++|.......++.+...++++++..++.|++.....|.+.. ++... +.+.+...|..+..
T Consensus 7 ~tm~~~P~il~~~P~-reL~W~~~~~~~~l~~~~~~~~le~~~~~~t~~~q~e~F~Gvlv~fv~~-lr~~~~~~f~~~n~ 84 (93)
T COG4891 7 FTMKIRPVILGLEPL-RELTWLGNVRFPGLLDGERYFELEALWGGRTRFAQGESFSGVLVPFVSE-LRRGLTASFENMNP 84 (93)
T ss_pred cceEEeeEEEecccc-hheeeecccccceEEeeEEEEEEeecCCccceeeccceecceeeccchh-hhccchhhhhhhCH
Confidence 345778889999888 9999998764445778899999999988999999999999863 34333 88899999999999
Q ss_pred HHHHHHhhC
Q 036221 151 RIDSAIQKV 159 (159)
Q Consensus 151 ~l~~~~e~~ 159 (159)
+|++++|++
T Consensus 85 alr~raE~~ 93 (93)
T COG4891 85 ALRARAEAV 93 (93)
T ss_pred HHHhhhhcC
Confidence 999999975
No 50
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=98.25 E-value=0.0002 Score=53.61 Aligned_cols=140 Identities=10% Similarity=0.087 Sum_probs=82.3
Q ss_pred EEE-eCChHHHHHHhhcCCCCCccccccceEEEcCCCCCCCcEEEEeccccccCCCCCcceEEEEEEeeeCCCCEE-EEE
Q 036221 16 GIV-DAPINKVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIRLVSGFMFPQENGERSWIKERLISMDSSSHSY-DYK 93 (159)
Q Consensus 16 ~~I-~ap~~~VW~~l~d~~~~~~W~p~v~~~~~~~g~~~~~G~~r~~~~~~~~~~~g~~~~~~e~i~~~d~~~~~~-~y~ 93 (159)
.+| ++|++.+++++.|.+..++|.+.+.+++.++......--++..... |..-.....+.-+...-+++...+ ..+
T Consensus 53 ~~~~~~s~e~~~~~l~D~~~r~~Wd~~~~e~~~ie~~d~~~~i~y~~~~~--P~pvs~RDfV~~r~~~~~~~~~vi~~~s 130 (222)
T cd08871 53 AIFPDVPAETLYDVLHDPEYRKTWDSNMIESFDICQLNPNNDIGYYSAKC--PKPLKNRDFVNLRSWLEFGGEYIIFNHS 130 (222)
T ss_pred EEeCCCCHHHHHHHHHChhhhhhhhhhhceeEEEEEcCCCCEEEEEEeEC--CCCCCCCeEEEEEEEEeCCCEEEEEecc
Confidence 344 7999999999999999999999988887655322111112222211 221111223333332222321122 112
Q ss_pred EeccCcc-------eeeeEEEEEEEEcCCCCeEEEEEEEEecCCCCChhH-HHHHHHHHHHHHHHHHHHHHhh
Q 036221 94 MEASNVG-------LDGSVNSLKLIDYGDDSTLVSWSFAIDPVEGASEDS-IIDYLGFLYKSCINRIDSAIQK 158 (159)
Q Consensus 94 ~~~~~~~-------~~~~~~~~~l~~~~~~~t~v~w~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~e~ 158 (159)
+.....| ...+.+.|.++|.++++|+++|....++.+. .... ....+....-..+.+|++.+++
T Consensus 131 v~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~t~vt~~~~~Dp~G~-IP~~lvN~~~~~~~~~~l~~l~k~~~~ 202 (222)
T cd08871 131 VKHKKYPPRKGFVRAISLLTGYLIRPTGPKGCTLTYVTQNDPKGS-LPKWVVNKATTKLAPKVMKKLHKAALK 202 (222)
T ss_pred ccCCCCCCCCCeEEeEEEccEEEEEECCCCCEEEEEEEecCCCCC-cCHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2211111 2345677899999888999999988887643 3333 3445566677889999998875
No 51
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=98.14 E-value=0.00078 Score=48.44 Aligned_cols=142 Identities=11% Similarity=0.075 Sum_probs=78.1
Q ss_pred EEEEEEEEeCChHHHHHHhhcCCCCCccccccceEEEcCCCCCCCcEEEEeccccccCCCCCcceEEEEEEeeeC-CCCE
Q 036221 11 RGSVGGIVDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIRLVSGFMFPQENGERSWIKERLISMDS-SSHS 89 (159)
Q Consensus 11 ~~~~s~~I~ap~~~VW~~l~d~~~~~~W~p~v~~~~~~~g~~~~~G~~r~~~~~~~~~~~g~~~~~~e~i~~~d~-~~~~ 89 (159)
.-....+|++|+++|++++.|.+..++|.+.+.++++++........++..... |..-.....+.-+....++ ....
T Consensus 40 ~~k~~~~i~~~~~~v~~~l~d~~~~~~w~~~~~~~~vl~~~~~~~~i~~~~~~~--p~p~~~Rdfv~~~~~~~~~~~~~~ 117 (193)
T cd00177 40 LLKAEGVIPASPEQVFELLMDIDLRKKWDKNFEEFEVIEEIDEHTDIIYYKTKP--PWPVSPRDFVYLRRRRKLDDGTYV 117 (193)
T ss_pred eEEEEEEECCCHHHHHHHHhCCchhhchhhcceEEEEEEEeCCCeEEEEEEeeC--CCccCCccEEEEEEEEEcCCCeEE
Confidence 344566789999999999999999999999998887766432222223332211 1111111222222222233 2122
Q ss_pred EEEEEeccC-cc-------eeeeEEEEEEEEcCCCCeEEEEEEEEecCCCCChhHHHHHHHHHHHHHHHHHHH
Q 036221 90 YDYKMEASN-VG-------LDGSVNSLKLIDYGDDSTLVSWSFAIDPVEGASEDSIIDYLGFLYKSCINRIDS 154 (159)
Q Consensus 90 ~~y~~~~~~-~~-------~~~~~~~~~l~~~~~~~t~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 154 (159)
+...-.+.+ .| ...+.+.+.+++.++++|++++....++....-...+...+.......+..++.
T Consensus 118 ~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~~~~~vt~~~~~D~~g~iP~~~~~~~~~~~~~~~~~~~~~ 190 (193)
T cd00177 118 IVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDPGKTKVTYVLQVDPKGSIPKSLVNSAAKKQLASFLKDLRK 190 (193)
T ss_pred EEEeecCCCCCCCCCCcEEEEEEccEEEEEECCCCCEEEEEEEeeCCCCCccHHHHHhhhhhccHHHHHHHHH
Confidence 222222211 11 123356688999988899999999998764322222333444444444444443
No 52
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=98.10 E-value=0.00042 Score=52.44 Aligned_cols=110 Identities=13% Similarity=0.135 Sum_probs=68.0
Q ss_pred EEEeCChHHHHHHhhcCCCCCccccccceEEEcCCCCCCCcEEEEeccccccCCCCCcceEEEEEEe---eeCCC-CEEE
Q 036221 16 GIVDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIRLVSGFMFPQENGERSWIKERLIS---MDSSS-HSYD 91 (159)
Q Consensus 16 ~~I~ap~~~VW~~l~d~~~~~~W~p~v~~~~~~~g~~~~~G~~r~~~~~~~~~~~g~~~~~~e~i~~---~d~~~-~~~~ 91 (159)
..+++|+++++++|.|.+..++|.+.+.++++++.-....+-++...-...|+ ++..+.-.... .+... ..+.
T Consensus 83 ~~vd~s~~~v~dlL~D~~~R~~WD~~~~e~evI~~id~d~~iyy~~~p~PwPv---k~RDfV~~~s~~~~~~~~~~~~I~ 159 (235)
T cd08873 83 LKVQTCASDAFDLLSDPFKRPEWDPHGRSCEEVKRVGEDDGIYHTTMPSLTSE---KPNDFVLLVSRRKPATDGDPYKVA 159 (235)
T ss_pred EEecCCHHHHHHHHhCcchhhhhhhcccEEEEEEEeCCCcEEEEEEcCCCCCC---CCceEEEEEEEEeccCCCCeEEEE
Confidence 35899999999999999999999999999987773222334344432110011 12222222111 12211 1222
Q ss_pred EEEec-cCc-------ceeeeEEEEEEEEcCCCCeEEEEEEEEec
Q 036221 92 YKMEA-SNV-------GLDGSVNSLKLIDYGDDSTLVSWSFAIDP 128 (159)
Q Consensus 92 y~~~~-~~~-------~~~~~~~~~~l~~~~~~~t~v~w~~~~~~ 128 (159)
.+-+. ... ......+-|.|.|.++++|+|+|....+|
T Consensus 160 ~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~~~t~VtY~~~~dP 204 (235)
T cd08873 160 FRSVTLPRVPQTPGYSRTEVACAGFVIRQDCGTCTEVSYYNETNP 204 (235)
T ss_pred EeeeecccCCCCCCeEEEEEEeeeEEEEECCCCcEEEEEEEEcCC
Confidence 22222 111 23567889999999988999999999886
No 53
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=98.09 E-value=0.00083 Score=49.89 Aligned_cols=141 Identities=15% Similarity=0.141 Sum_probs=85.0
Q ss_pred EEEE-eCChHHHHHHhhcCCCCCccccccceEEEcCCCCC-CCcEEEEeccccccCCCCCcceEEEEEEeee-CCCCEEE
Q 036221 15 GGIV-DAPINKVWTIVSQTKKLPEWMPMVERCTDLAGDEG-VPGYIRLVSGFMFPQENGERSWIKERLISMD-SSSHSYD 91 (159)
Q Consensus 15 s~~I-~ap~~~VW~~l~d~~~~~~W~p~v~~~~~~~g~~~-~~G~~r~~~~~~~~~~~g~~~~~~e~i~~~d-~~~~~~~ 91 (159)
..++ ++|++.+.+++.|.+..++|.+.+.++++++-.+. +.--++.... +|..-.....+.-+....+ .....+.
T Consensus 55 ~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~~~le~~~~~~~~i~y~~~~--~P~P~s~RD~V~~r~~~~~~~~~~~i~ 132 (209)
T cd08870 55 RGVFEDCTPELLRDFYWDDEYRKKWDETVIEHETLEEDEKSGTEIVRWVKK--FPFPLSDREYVIARRLWESDDRSYVCV 132 (209)
T ss_pred EEEEcCCCHHHHHHHHcChhhHhhhhhheeeEEEEEecCCCCcEEEEEEEE--CCCcCCCceEEEEEEEEEcCCCEEEEE
Confidence 3456 67999999999999999999999888876654321 2222333322 2321111223333333333 2212222
Q ss_pred EEEecc-------CcceeeeEEEEEEEEc--CCCCeEEEEEEEEecCCCCChhH-HHHHHHHHHHHHHHHHHHHHhh
Q 036221 92 YKMEAS-------NVGLDGSVNSLKLIDY--GDDSTLVSWSFAIDPVEGASEDS-IIDYLGFLYKSCINRIDSAIQK 158 (159)
Q Consensus 92 y~~~~~-------~~~~~~~~~~~~l~~~--~~~~t~v~w~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~e~ 158 (159)
...... ...+..+.+.+.++|. ++++|.++++...++-. ..... ....+....-..+.+|++.+.+
T Consensus 133 ~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp~G-~IP~wlvN~~~~~~~~~~l~~l~~a~~~ 208 (209)
T cd08870 133 TKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNPDG-GIPRELAKLAVKRGMPGFLKKLENALRK 208 (209)
T ss_pred EeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEEECCCC-CCCHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 222221 1124568889999998 77889999998887643 33333 4445567777888899888754
No 54
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=98.05 E-value=0.00072 Score=50.11 Aligned_cols=142 Identities=13% Similarity=0.151 Sum_probs=81.6
Q ss_pred EEEEEeCChHHHHH-HhhcCCCCCccccccceEEEcCCCCCCCcEEEEeccc--cccCCCCCcceEEEEEEeeeCCCCEE
Q 036221 14 VGGIVDAPINKVWT-IVSQTKKLPEWMPMVERCTDLAGDEGVPGYIRLVSGF--MFPQENGERSWIKERLISMDSSSHSY 90 (159)
Q Consensus 14 ~s~~I~ap~~~VW~-~l~d~~~~~~W~p~v~~~~~~~g~~~~~G~~r~~~~~--~~~~~~g~~~~~~e~i~~~d~~~~~~ 90 (159)
.+..|++|++.|++ ++.|.+..++|.+.+.++++++.-+...--++.+... ..|.. ....+.-+....+++...+
T Consensus 52 ~~~~i~~~~~~v~~~l~~d~~~~~~Wd~~~~~~~~i~~~d~~~~i~y~~~~~~~~~~vs--~RDfV~~r~~~~~~~~~~i 129 (208)
T cd08868 52 LTGVLDCPAEFLYNELVLNVESLPSWNPTVLECKIIQVIDDNTDISYQVAAEAGGGLVS--PRDFVSLRHWGIRENCYLS 129 (208)
T ss_pred EEEEEcCCHHHHHHHHHcCccccceecCcccceEEEEEecCCcEEEEEEecCcCCCccc--ccceEEEEEEEecCCeEEE
Confidence 34578999999986 5669999999999998887655422222112222210 00111 1123333333333332222
Q ss_pred EEEEec-cCcc-------eeeeEEEEEEEEcCC--CCeEEEEEEEEecCCCCChhH-HHHHHHHHHHHHHHHHHHHHhh
Q 036221 91 DYKMEA-SNVG-------LDGSVNSLKLIDYGD--DSTLVSWSFAIDPVEGASEDS-IIDYLGFLYKSCINRIDSAIQK 158 (159)
Q Consensus 91 ~y~~~~-~~~~-------~~~~~~~~~l~~~~~--~~t~v~w~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~e~ 158 (159)
...... ...| .....+.|.++|.++ ++|.++|....++.+. .... ....+....-..+.+|+++++.
T Consensus 130 ~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~-iP~~lvN~~~~~~~~~~~~~Lr~~~~~ 207 (208)
T cd08868 130 SGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGW-LPQYLVDQALASVLLDFMKHLRKRIAT 207 (208)
T ss_pred EEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCC-CcceeeehhhHHHHHHHHHHHHHHHhh
Confidence 222222 1111 245668899999854 6799999988887632 2222 3444566777788899998875
No 55
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=98.04 E-value=0.0011 Score=49.27 Aligned_cols=143 Identities=13% Similarity=0.094 Sum_probs=79.1
Q ss_pred EEEEEeCChHHHHHHhhcCCCC--CccccccceEEEcCCCCCCCcEEEEeccccccCC--CCCcceEEEEEE-eeeCCCC
Q 036221 14 VGGIVDAPINKVWTIVSQTKKL--PEWMPMVERCTDLAGDEGVPGYIRLVSGFMFPQE--NGERSWIKERLI-SMDSSSH 88 (159)
Q Consensus 14 ~s~~I~ap~~~VW~~l~d~~~~--~~W~p~v~~~~~~~g~~~~~G~~r~~~~~~~~~~--~g~~~~~~e~i~-~~d~~~~ 88 (159)
...+|++++++++++|.|..+. ++|.+.+.++++++.-+....-++...- .|.. -.....+.-+.. ..++..-
T Consensus 50 ~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~~~vle~id~~~~i~~~~~p--~~~~~~vs~RDfV~~~~~~~~~d~~i 127 (208)
T cd08903 50 GEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKDFEVVEAISDDVSVCRTVTP--SAAMKIISPRDFVDVVLVKRYEDGTI 127 (208)
T ss_pred EEEEecCCHHHHHHHHHhccchhhhhhhhccccEEEEEEecCCEEEEEEecc--hhcCCCcCCCceEEEEEEEecCCceE
Confidence 4457899999999999988766 8999999888876643222222343221 0100 011122222222 2222211
Q ss_pred EEEEEEecc-Ccc----e-e--eeEEEEEEEEc--CCCCeEEEEEEEEecCCCCChhHHHHHHHHHHHHHHHHHHHHHhh
Q 036221 89 SYDYKMEAS-NVG----L-D--GSVNSLKLIDY--GDDSTLVSWSFAIDPVEGASEDSIIDYLGFLYKSCINRIDSAIQK 158 (159)
Q Consensus 89 ~~~y~~~~~-~~~----~-~--~~~~~~~l~~~--~~~~t~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~e~ 158 (159)
.+.+..... ..| + . ...+.+.+.+. ++++|.++|....++.+.+-......++.......+.+|++.+..
T Consensus 128 ~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~~~~DpkG~iP~~lvn~~~~~~~~~~~~~Lr~~~~~ 207 (208)
T cd08903 128 SSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSFFQTDLSGYLPQTVVDSFFPASMAEFYNNLTKAVKA 207 (208)
T ss_pred EEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEEeccCCCcCHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 223322322 111 1 1 22123344544 667899999999998643333335556666777888999988754
No 56
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=98.00 E-value=0.00089 Score=49.33 Aligned_cols=139 Identities=15% Similarity=0.102 Sum_probs=80.4
Q ss_pred EEEEEEeCChHHHHHHhhcCCCCCccccccceEEEcCCCCCCCcEEEEeccccccCCCCCcceEEEEEEeeeCCC--CEE
Q 036221 13 SVGGIVDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIRLVSGFMFPQENGERSWIKERLISMDSSS--HSY 90 (159)
Q Consensus 13 ~~s~~I~ap~~~VW~~l~d~~~~~~W~p~v~~~~~~~g~~~~~G~~r~~~~~~~~~~~g~~~~~~e~i~~~d~~~--~~~ 90 (159)
..+.+|+||+++|++.+.|. -++|.+.+.++++++--+...--.+.......|.. ....+.-+....+.+. ..+
T Consensus 47 K~~~~v~a~~~~v~~~l~d~--r~~Wd~~~~~~~vie~id~~~~i~y~~~~~p~pv~--~RDfV~~r~~~~~~~~g~~~i 122 (197)
T cd08869 47 RASTEVEAPPEEVLQRILRE--RHLWDDDLLQWKVVETLDEDTEVYQYVTNSMAPHP--TRDYVVLRTWRTDLPKGACVL 122 (197)
T ss_pred EEEEEeCCCHHHHHHHHHHH--HhccchhhheEEEEEEecCCcEEEEEEeeCCCCCC--CceEEEEEEEEecCCCCcEEE
Confidence 44667899999999988874 38999999888766532111111232221111221 1223333333322322 222
Q ss_pred EEEEecc--Cc--c---eeeeEEEEEEEEcCCCCeEEEEEEEEecCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 036221 91 DYKMEAS--NV--G---LDGSVNSLKLIDYGDDSTLVSWSFAIDPVEGASEDSIIDYLGFLYKSCINRIDSAI 156 (159)
Q Consensus 91 ~y~~~~~--~~--~---~~~~~~~~~l~~~~~~~t~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 156 (159)
.++-+.. .. + .....+-|.++|.++++|+|+|....++.+ .....+....+......+.+|+.-+
T Consensus 123 ~~~Sv~~~~~~p~g~VR~~~~~~g~~i~p~~~~~t~vty~~~~Dp~G-~iP~wl~N~~~~~~~~~~~~l~~~~ 194 (197)
T cd08869 123 VETSVEHTEPVPLGGVRAVVLASRYLIEPCGSGKSRVTHICRVDLRG-RSPEWYNKVYGHLCARELLRIRDSF 194 (197)
T ss_pred EEECCcCCCCCCCCCEEEEEEeeeEEEEECCCCCeEEEEEEEECCCC-CCCceeecchHhHHHHHHHHHHhhc
Confidence 3333321 11 2 345678899999988899999999999753 3344455555566666777777654
No 57
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=97.97 E-value=0.0017 Score=48.24 Aligned_cols=140 Identities=11% Similarity=0.069 Sum_probs=86.6
Q ss_pred EEE-eCChHHHHHHhhcCCCCCccccccceEEEcCCC-CCCCcEEEEeccccccCCCCCcceEEEEEEeeeCCCCEE---
Q 036221 16 GIV-DAPINKVWTIVSQTKKLPEWMPMVERCTDLAGD-EGVPGYIRLVSGFMFPQENGERSWIKERLISMDSSSHSY--- 90 (159)
Q Consensus 16 ~~I-~ap~~~VW~~l~d~~~~~~W~p~v~~~~~~~g~-~~~~G~~r~~~~~~~~~~~g~~~~~~e~i~~~d~~~~~~--- 90 (159)
.++ ++|++.+.+++.|.+..++|.+.+.++++++.. ....-.+..... +|..--....+.-+-...+++...+
T Consensus 51 ~~~~d~s~~~~~~~~~D~~~r~~Wd~~~~~~~~le~~~~~~~~i~y~~~~--~P~P~s~RD~V~~r~~~~~~~~~~~~i~ 128 (207)
T cd08911 51 GSFDDVTARDFLNVQLDLEYRKKWDATAVELEVVDEDPETGSEIIYWEMQ--WPKPFANRDYVYVRRYIIDEENKLIVIV 128 (207)
T ss_pred EEEcCCCHHHHHHHHhCHHHHHHHHhhheeEEEEEccCCCCCEEEEEEEE--CCCCCCCccEEEEEEEEEcCCCCEEEEE
Confidence 335 999999999999999999999999888876642 111111222221 2322112244555555556553332
Q ss_pred EEEEeccC-------cceeeeEEEEEEEEc---CCCCeEEEEEEEEecCCCCChhH-HHHHHHHHHHHHHHHHHHHHhh
Q 036221 91 DYKMEASN-------VGLDGSVNSLKLIDY---GDDSTLVSWSFAIDPVEGASEDS-IIDYLGFLYKSCINRIDSAIQK 158 (159)
Q Consensus 91 ~y~~~~~~-------~~~~~~~~~~~l~~~---~~~~t~v~w~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~e~ 158 (159)
...+.+.. ..+..+.+.|.++|. ++++|++++....++- |..... ....+.+..-..+.+|++++.+
T Consensus 129 ~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~dPg-G~IP~~lvN~~~~~~~~~~l~~l~~a~~~ 206 (207)
T cd08911 129 SKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFDNPG-VNIPSYITSWVAMSGMPDFLERLRNAALK 206 (207)
T ss_pred EecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEeCCC-CccCHHHHHHHHHhhccHHHHHHHHHHhc
Confidence 11222111 124568889999998 3568999987665543 333443 4445578888999999998864
No 58
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=97.92 E-value=0.0018 Score=47.98 Aligned_cols=139 Identities=11% Similarity=0.099 Sum_probs=85.3
Q ss_pred EEEEEeCChHHHHHHhhcCCCCCccccccceEEEcCCCCCCCcEEEEeccccccCCCCCcceEEEEEEeeeCCCCEE--E
Q 036221 14 VGGIVDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIRLVSGFMFPQENGERSWIKERLISMDSSSHSY--D 91 (159)
Q Consensus 14 ~s~~I~ap~~~VW~~l~d~~~~~~W~p~v~~~~~~~g~~~~~G~~r~~~~~~~~~~~g~~~~~~e~i~~~d~~~~~~--~ 91 (159)
.+++|+|++++|...|-|. .++|.+.+.++++++--+...--.+.....++|..+ ...+.-|....+.+...+ .
T Consensus 56 ~~~~i~a~~~~vl~~lld~--~~~Wd~~~~e~~vIe~ld~~~~I~Yy~~~~PwP~~~--RD~V~~Rs~~~~~~~g~~~I~ 131 (204)
T cd08908 56 TTIEVPAAPEEILKRLLKE--QHLWDVDLLDSKVIEILDSQTEIYQYVQNSMAPHPA--RDYVVLRTWRTNLPKGACALL 131 (204)
T ss_pred EEEEeCCCHHHHHHHHHhh--HHHHHHHhhheEeeEecCCCceEEEEEccCCCCCCC--cEEEEEEEEEEeCCCCeEEEE
Confidence 3456799999999998876 789999988776655322111112333222233321 123333232223332322 2
Q ss_pred EE-EeccCcc-----eeeeEEEEEEEEcCCCCeEEEEEEEEecCCCCChhHHHHHHHHHHHHHHHHHHHHHh
Q 036221 92 YK-MEASNVG-----LDGSVNSLKLIDYGDDSTLVSWSFAIDPVEGASEDSIIDYLGFLYKSCINRIDSAIQ 157 (159)
Q Consensus 92 y~-~~~~~~~-----~~~~~~~~~l~~~~~~~t~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~e 157 (159)
.. +.....| +....+.|.|+|.++++|+|++....++. |-....+....+.....-+.+|+.-+.
T Consensus 132 ~~Sv~h~~~P~~~VR~~~~~~~w~i~P~g~g~t~vtyi~~~DPg-G~iP~W~~N~~g~~~~~~~~~~r~sf~ 202 (204)
T cd08908 132 ATSVDHDRAPVAGVRVNVLLSRYLIEPCGSGKSKLTYMCRIDLR-GHMPEWYTKSFGHLCAAEVVKIRDSFS 202 (204)
T ss_pred EeecCcccCCcCceEEEEEeeEEEEEECCCCcEEEEEEEEeCCC-CCCcHHHHhhHHHHHHHHHHHHHhhcc
Confidence 12 2221122 34567889999998899999999888875 345667888888888888888887654
No 59
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=97.87 E-value=0.0035 Score=46.33 Aligned_cols=143 Identities=10% Similarity=-0.022 Sum_probs=81.5
Q ss_pred EEEEEEeCChHHHHHHhhc--CCCCCccccccceEEEcCCCCCCCcEEEEeccc-cccCCCCCcceEEEE-EEeeeCCCC
Q 036221 13 SVGGIVDAPINKVWTIVSQ--TKKLPEWMPMVERCTDLAGDEGVPGYIRLVSGF-MFPQENGERSWIKER-LISMDSSSH 88 (159)
Q Consensus 13 ~~s~~I~ap~~~VW~~l~d--~~~~~~W~p~v~~~~~~~g~~~~~G~~r~~~~~-~~~~~~g~~~~~~e~-i~~~d~~~~ 88 (159)
..+.+|++++++|.+++.| ....++|.+.+.++++++.-....--++..... ..+. -.....+.-+ ...++....
T Consensus 49 k~~~~i~~~~~~v~~~l~d~~~~~r~~Wd~~~~~~~~le~id~~~~i~~~~~p~~~~~~-vs~RDfV~~~~~~~~~~~~~ 127 (206)
T cd08867 49 RAEGIVDALPEKVIDVIIPPCGGLRLKWDKSLKHYEVLEKISEDLCVGRTITPSAAMGL-ISPRDFVDLVYVKRYEDNQW 127 (206)
T ss_pred EEEEEEcCCHHHHHHHHHhcCccccccccccccceEEEEEeCCCeEEEEEEccccccCc-cCCcceEEEEEEEEeCCCeE
Confidence 3445789999999999998 778899999998887766421111112222100 0000 0111122212 223333222
Q ss_pred EEEEEEeccC-cc-------eeeeEEEEEEEEcC--CCCeEEEEEEEEecCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 036221 89 SYDYKMEASN-VG-------LDGSVNSLKLIDYG--DDSTLVSWSFAIDPVEGASEDSIIDYLGFLYKSCINRIDSAI 156 (159)
Q Consensus 89 ~~~y~~~~~~-~~-------~~~~~~~~~l~~~~--~~~t~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 156 (159)
.+....++.+ .| .....+-|-++|.. +++|.++|....++.+.+-.......+.......+.+|++++
T Consensus 128 ~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG~iP~~lvn~~~~~~~~~~~~~lr~~~ 205 (206)
T cd08867 128 SSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLYVQTDLRGMIPQSLVESAMPSNLVNFYTDLVKGV 205 (206)
T ss_pred EEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCCCCCceEEEEEEEeccCCCCcHHHHHhhhhhhHHHHHHHHHHhc
Confidence 2333333211 11 23455677788764 467999999999887533333355566778888889998876
No 60
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=97.81 E-value=0.0046 Score=45.35 Aligned_cols=142 Identities=15% Similarity=0.094 Sum_probs=78.4
Q ss_pred EEEEEeCChHH-HHHHhhcCCCCCccccccceEEEcCCCCCCCcEEEEeccccc-cCCCCCcceEEEEEEeeeC-CCCEE
Q 036221 14 VGGIVDAPINK-VWTIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIRLVSGFMF-PQENGERSWIKERLISMDS-SSHSY 90 (159)
Q Consensus 14 ~s~~I~ap~~~-VW~~l~d~~~~~~W~p~v~~~~~~~g~~~~~G~~r~~~~~~~-~~~~g~~~~~~e~i~~~d~-~~~~~ 90 (159)
....|++++.+ +=+++.|.+..++|.+.+.+++.++.-....--.+......+ |.. + ...+.-+-...+. +...+
T Consensus 49 ~~~~v~~~~~~~~~~~~~d~~~r~~Wd~~~~~~~~ie~~~~~~~i~~~~~~~~~~p~~-~-RDfv~~r~~~~~~~~~~vi 126 (206)
T smart00234 49 AVGVVPMVCADLVEELMDDLRYRPEWDKNVAKAETLEVIDNGTVIYHYVSKFVAGPVS-P-RDFVFVRYWRELVDGSYAV 126 (206)
T ss_pred EEEEEecChHHHHHHHHhcccchhhCchhcccEEEEEEECCCCeEEEEEEecccCcCC-C-CeEEEEEEEEEcCCCcEEE
Confidence 34568888887 556888999999999999888765532211111222222211 221 1 2233233323323 32233
Q ss_pred EEEEeccC-cc-------eeeeEEEEEEEEcCCCCeEEEEEEEEecCCCCChhHHHHHHHHHHHHHHHHHHHHHh
Q 036221 91 DYKMEASN-VG-------LDGSVNSLKLIDYGDDSTLVSWSFAIDPVEGASEDSIIDYLGFLYKSCINRIDSAIQ 157 (159)
Q Consensus 91 ~y~~~~~~-~~-------~~~~~~~~~l~~~~~~~t~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~e 157 (159)
..+....+ .| ...+.+.|.++|.+++.|+++|....++.+..-...+...+......++.+|++.++
T Consensus 127 ~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~D~~G~iP~~lvn~~~~~~~~~~~~~~~~~~~ 201 (206)
T smart00234 127 VDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNGPSKVTWVSHADLKGWLPHWLVRSLIKSGLAEFAKTWVATLQ 201 (206)
T ss_pred EEEECCCCCCCCCCCceEEEEeceEEEEEECCCCCeEEEEEEEEecCCCccceeehhhhhhhHHHHHHHHHHHHH
Confidence 33222211 11 245778899999988889999999888754221112334444555555666665553
No 61
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=97.81 E-value=0.0011 Score=47.25 Aligned_cols=141 Identities=11% Similarity=0.068 Sum_probs=77.2
Q ss_pred EEEEEEeCChHHHHHHhhcCCCCC----cccc---ccceEEEcCCCCCCCcEEEEeccccccCC----CCCcceEEEEEE
Q 036221 13 SVGGIVDAPINKVWTIVSQTKKLP----EWMP---MVERCTDLAGDEGVPGYIRLVSGFMFPQE----NGERSWIKERLI 81 (159)
Q Consensus 13 ~~s~~I~ap~~~VW~~l~d~~~~~----~W~p---~v~~~~~~~g~~~~~G~~r~~~~~~~~~~----~g~~~~~~e~i~ 81 (159)
+.++++++|+++||+++.|-.-|. .... .+.+++. +++...+-..+.+..-.+|.. -+. .-...+..
T Consensus 2 ~~~~~~~~~~~~v~~~~~d~~y~~~r~~~~g~~~~~~~~~~~-~~~g~~v~~~~~v~~~~lP~~~~k~v~~-~l~v~~~e 79 (159)
T PF10698_consen 2 EHSVEYPAPVERVWAAFTDEDYWEARCAALGADNAEVESFEV-DGDGVRVTVRQTVPADKLPSAARKFVGG-DLRVTRTE 79 (159)
T ss_pred eEEEEcCCCHHHHHHHHcCHHHHHHHHHHcCCCCceEEEEEE-cCCeEEEEEEEecChhhCCHHHHHhcCC-CeEEEEEE
Confidence 357789999999999999732221 1111 1222221 221111111121110000100 011 11223444
Q ss_pred ee---eCCCCEEEEEEeccCcceeeeEEEEEEEEcCCCCeEEEEEEEEecCCCCChhHHHHHHHHHHHHHHHHHHHHHh
Q 036221 82 SM---DSSSHSYDYKMEASNVGLDGSVNSLKLIDYGDDSTLVSWSFAIDPVEGASEDSIIDYLGFLYKSCINRIDSAIQ 157 (159)
Q Consensus 82 ~~---d~~~~~~~y~~~~~~~~~~~~~~~~~l~~~~~~~t~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~e 157 (159)
.| ++..+...|++.-...|+ ...++++|.+. +++|+++++.++...-|+....+.+.+...+...++...+...
T Consensus 80 ~w~~~~~g~~~g~~~~~~~G~P~-~~~G~~~L~~~-~~gt~~~~~g~v~v~VPlvGgkiE~~v~~~~~~~~~~e~~~~~ 156 (159)
T PF10698_consen 80 TWTPLDDGRRTGTFTVSIPGAPV-SISGTMRLRPD-GGGTRLTVEGEVKVKVPLVGGKIEKAVAENLRKLLEAEQEFTA 156 (159)
T ss_pred EEecCCCCeEEEEEEEEecCceE-EEEEEEEEecC-CCCEEEEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55 335455566665433344 58899999995 4789999999998765566666777777777777766665543
No 62
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=97.61 E-value=0.005 Score=45.72 Aligned_cols=139 Identities=12% Similarity=0.073 Sum_probs=81.9
Q ss_pred EEEEe-CChHHHHHHhhcCCCCCccccccceEEEcCCCCCCCcEEEEeccccccCCCCCcceEEE-EEEeeeCCCCEEE-
Q 036221 15 GGIVD-APINKVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIRLVSGFMFPQENGERSWIKE-RLISMDSSSHSYD- 91 (159)
Q Consensus 15 s~~I~-ap~~~VW~~l~d~~~~~~W~p~v~~~~~~~g~~~~~G~~r~~~~~~~~~~~g~~~~~~e-~i~~~d~~~~~~~- 91 (159)
..+++ ++++.+.+++.|.+..++|.+.+.++.....+...+. +.....-+|+.+ ...+.- .....+.+.+.+.
T Consensus 54 ~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~~~~~~~~~~i~--y~~~k~PwPvs~--RD~V~~r~~~~~~~~~~~~~i 129 (207)
T cd08910 54 FGVLEDCSPSLLADVYMDLEYRKQWDQYVKELYEKECDGETVI--YWEVKYPFPLSN--RDYVYIRQRRDLDVEGRKIWV 129 (207)
T ss_pred EEEEcCCCHHHHHHHHhCHHHHHHHHHHHHhheeecCCCCEEE--EEEEEcCCCCCC--ceEEEEEEeccccCCCCeEEE
Confidence 44666 7999999999999999999998765432222211122 222211122221 122211 2223333322111
Q ss_pred --EEEeccC--------cceeeeEEEEEEEEcCCCCeEEEEEEEEecCCCCChhH-HHHHHHHHHHHHHHHHHHHHhh
Q 036221 92 --YKMEASN--------VGLDGSVNSLKLIDYGDDSTLVSWSFAIDPVEGASEDS-IIDYLGFLYKSCINRIDSAIQK 158 (159)
Q Consensus 92 --y~~~~~~--------~~~~~~~~~~~l~~~~~~~t~v~w~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~e~ 158 (159)
.+....+ ..+..+.+.|.++|.++++|++++....+|-. ..... ......+.....+.+|++++.+
T Consensus 130 v~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~~t~i~~~~~~DPgG-~IP~wlvN~~~~~~~~~~l~~l~ka~~~ 206 (207)
T cd08910 130 ILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGG-MIPSWLINWAAKNGVPNFLKDMQKACQN 206 (207)
T ss_pred EEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCCCceEEEEEEEeCCCC-cchHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 1112111 12457889999999888889999998888643 33444 4445578888999999998864
No 63
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=97.60 E-value=0.0041 Score=47.27 Aligned_cols=110 Identities=14% Similarity=0.161 Sum_probs=64.7
Q ss_pred EEEeCChHHHHHHhhcCCCCCccccccceEEEcCCCCCCCcEEEEeccccccCC-CCCc-ceEEEEEEee--eCCC-CEE
Q 036221 16 GIVDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIRLVSGFMFPQE-NGER-SWIKERLISM--DSSS-HSY 90 (159)
Q Consensus 16 ~~I~ap~~~VW~~l~d~~~~~~W~p~v~~~~~~~g~~~~~G~~r~~~~~~~~~~-~g~~-~~~~e~i~~~--d~~~-~~~ 90 (159)
..|++|++.++++|.|.++.++|.+.+.+|++++-.+.... ++.+... |.. .-+. ..+.-.-..- +... ..+
T Consensus 87 ~~vd~s~e~v~~lL~D~~~r~~Wd~~~~e~~vIe~id~~~~-vY~v~~~--p~~~pvs~RDfV~~~s~~~~~~~g~~yii 163 (240)
T cd08913 87 MVVHVDAAQAFLLLSDLRRRPEWDKHYRSCELVQQVDEDDA-IYHVTSP--SLSGHGKPQDFVILASRRKPCDNGDPYVI 163 (240)
T ss_pred EEEcCCHHHHHHHHhChhhhhhhHhhccEEEEEEecCCCcE-EEEEecC--CCCCCCCCCeEEEEEEEEeccCCCccEEE
Confidence 47899999999999999999999999999987664222222 3433311 110 0111 1221111111 1111 113
Q ss_pred EEEEecc-Ccc-------eeeeEEEEEEEEcCCCCeEEEEEEEEec
Q 036221 91 DYKMEAS-NVG-------LDGSVNSLKLIDYGDDSTLVSWSFAIDP 128 (159)
Q Consensus 91 ~y~~~~~-~~~-------~~~~~~~~~l~~~~~~~t~v~w~~~~~~ 128 (159)
.-+.... ..| .....+.|.|.|.+++.|+++|....++
T Consensus 164 ~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~~dP 209 (240)
T cd08913 164 ALRSVTLPTHPPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQATP 209 (240)
T ss_pred EEEEeecCCCCCCCCcEEeeecccEEEEEECCCCcEEEEEEEEeCC
Confidence 3333321 122 3567789999999888999998765553
No 64
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=97.49 E-value=0.0071 Score=45.81 Aligned_cols=107 Identities=15% Similarity=0.130 Sum_probs=63.1
Q ss_pred EEEeCChHHHHHHhhcCCCCCccccccceEEEcCCC-CCCCcEEEEeccccc-cCCCCCcceEEEEEEe--eeCCCCEE-
Q 036221 16 GIVDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGD-EGVPGYIRLVSGFMF-PQENGERSWIKERLIS--MDSSSHSY- 90 (159)
Q Consensus 16 ~~I~ap~~~VW~~l~d~~~~~~W~p~v~~~~~~~g~-~~~~G~~r~~~~~~~-~~~~g~~~~~~e~i~~--~d~~~~~~- 90 (159)
..+++|++.+.++|.|.++.++|.+.+.++++++.- +..- ++.+....+ |+.+ ..+.-+... ..+++..+
T Consensus 84 ~~vdvs~~~l~~LL~D~~~r~~Wd~~~~e~~vI~qld~~~~--vY~~~~pPw~Pvk~---RD~V~~~s~~~~~~dg~~~~ 158 (236)
T cd08914 84 KHVKRPAHLAYRLLSDFTKRPLWDPHFLSCEVIDWVSEDDQ--IYHITCPIVNNDKP---KDLVVLVSRRKPLKDGNTYV 158 (236)
T ss_pred EEEcCCHHHHHHHHhChhhhchhHHhhceEEEEEEeCCCcC--EEEEecCCCCCCCC---ceEEEEEEEEecCCCCCEEE
Confidence 367999999999999999999999999999876532 1111 344332111 2211 222221111 12122212
Q ss_pred -E-EEEeccCcc-------eee-eEEEEEEEEcCCCCeEEEEEEEEec
Q 036221 91 -D-YKMEASNVG-------LDG-SVNSLKLIDYGDDSTLVSWSFAIDP 128 (159)
Q Consensus 91 -~-y~~~~~~~~-------~~~-~~~~~~l~~~~~~~t~v~w~~~~~~ 128 (159)
. ..+.+...| +.. ..|. .|+|.++++|+|+|....+|
T Consensus 159 I~~~SVp~~~~Pp~kg~VRv~~~~~G~-~I~pl~~~~~~VtY~~~~dP 205 (236)
T cd08914 159 VAVKSVILPSVPPSPQYIRSEIICAGF-LIHAIDSNSCTVSYFNQISA 205 (236)
T ss_pred EEEeecccccCCCCCCcEEeEEEEEEE-EEEEcCCCcEEEEEEEEcCC
Confidence 2 222221111 234 4455 89999989999999999887
No 65
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=97.41 E-value=0.029 Score=41.68 Aligned_cols=140 Identities=10% Similarity=-0.006 Sum_probs=83.2
Q ss_pred EEEEEeCChHHHHHHhhcCCCCCccccccceEEEcCC--CCCCCcEEEEeccccccCC-CCCcceEEEEEE-eeeCCCCE
Q 036221 14 VGGIVDAPINKVWTIVSQTKKLPEWMPMVERCTDLAG--DEGVPGYIRLVSGFMFPQE-NGERSWIKERLI-SMDSSSHS 89 (159)
Q Consensus 14 ~s~~I~ap~~~VW~~l~d~~~~~~W~p~v~~~~~~~g--~~~~~G~~r~~~~~~~~~~-~g~~~~~~e~i~-~~d~~~~~ 89 (159)
.+.+|++++++|++++.|-+.-.+|++-+.++++++- .+-.+...+. .+. ++. -+....+.-+-. .++.....
T Consensus 50 ~egvi~~~~e~v~~~l~~~e~r~~Wd~~~~~~~iie~Id~~T~I~~~~~-~~~--~~~~vspRDfV~vr~~~r~~~~~~i 126 (204)
T cd08904 50 VEGIIPESPAKLIQFMYQPEHRIKWDKSLQVYKMLQRIDSDTFICHTIT-QSF--AMGSISPRDFVDLVHIKRYEGNMNI 126 (204)
T ss_pred EEEEecCCHHHHHHHHhccchhhhhcccccceeeEEEeCCCcEEEEEec-ccc--cCCcccCceEEEEEEEEEeCCCEEE
Confidence 4457899999999999998888999999888876553 1222221111 110 000 111223333222 22333222
Q ss_pred EEEEEeccC-cc-------eeeeEEEEEEEEcCC--CCeEEEEEEEEecCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 036221 90 YDYKMEASN-VG-------LDGSVNSLKLIDYGD--DSTLVSWSFAIDPVEGASEDSIIDYLGFLYKSCINRIDSAI 156 (159)
Q Consensus 90 ~~y~~~~~~-~~-------~~~~~~~~~l~~~~~--~~t~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 156 (159)
+....++.+ .| ..+..+-|-+.|..+ ++|.++|-+..++.+.+-.....+.+...+-..+.+|++.+
T Consensus 127 i~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~~~~DlkG~lP~~vv~~~~~~~~~~f~~~~~~~~ 203 (204)
T cd08904 127 VSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPENPAYSKLVMFVQPELRGNLSRSVIEKTMPTNLVNLILDAKDGI 203 (204)
T ss_pred EEEEecccCCCCCCCCcEEEeeeccEEEEEECCCCCCceEEEEEEEeCCCCCCCHHHHHHHhHHHHHHHHHHHHHhc
Confidence 223333322 11 245667788999864 47999999998887544444566777788888888888765
No 66
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=97.31 E-value=0.019 Score=38.98 Aligned_cols=97 Identities=9% Similarity=0.138 Sum_probs=65.9
Q ss_pred EEEEEeCChHHHHHHhhcCCCCCccccccceEEEcCCC-----CCCCcEEEEeccccccCCCCCcceEEEEEEeeeCCCC
Q 036221 14 VGGIVDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGD-----EGVPGYIRLVSGFMFPQENGERSWIKERLISMDSSSH 88 (159)
Q Consensus 14 ~s~~I~ap~~~VW~~l~d~~~~~~W~p~v~~~~~~~g~-----~~~~G~~r~~~~~~~~~~~g~~~~~~e~i~~~d~~~~ 88 (159)
++..+++|++.+++.|-+--.. .+... .|. .- .|...... +.++ ...+-+|+++.++ +
T Consensus 3 I~~~l~v~a~~ff~~l~~s~~~-----DI~~~---tgk~~~~~~L-~G~~Y~K~-----~~~~--~~~~v~It~~~~~-~ 65 (120)
T PF11687_consen 3 ISKTLNVSAEEFFDYLIDSLLY-----DIKQA---TGKKLPVKQL-KGFSYQKK-----FKNK--REAKVKITEYEPN-K 65 (120)
T ss_pred EEEEecCCHHHHHHHHHHHHHH-----HHHHH---cCCCCChhhc-CCcEEEEE-----cCCC--CEEEEEEEEEcCC-C
Confidence 5678999999999988752111 12111 111 11 34433332 1233 3677789999998 8
Q ss_pred EEEEEEeccCcceeeeEEEEEEEEcCCCCeEEEEEEEEecCC
Q 036221 89 SYDYKMEASNVGLDGSVNSLKLIDYGDDSTLVSWSFAIDPVE 130 (159)
Q Consensus 89 ~~~y~~~~~~~~~~~~~~~~~l~~~~~~~t~v~w~~~~~~~~ 130 (159)
.+.+.... +......++++++.+++.|+|+++.++.+..
T Consensus 66 ~Y~~~~~s---~~~~~~i~Y~i~~~~~~~~~v~y~E~~~~~~ 104 (120)
T PF11687_consen 66 RYAATFSS---SRGTFTISYEIEPLDDGSIEVTYEEEYESKG 104 (120)
T ss_pred EEEEEEEe---cCCCEEEEEEEEECCCCcEEEEEEEEEccCC
Confidence 88888875 2345888999999998889999999998764
No 67
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]
Probab=97.27 E-value=0.0045 Score=45.55 Aligned_cols=132 Identities=11% Similarity=0.150 Sum_probs=77.4
Q ss_pred EEeCChHHHHHHhhcCCCCCccccccceEEEcCCCCCCCcEEEEeccccccCCCCCcceEEEEEEeeeCCCCEEEEEEec
Q 036221 17 IVDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIRLVSGFMFPQENGERSWIKERLISMDSSSHSYDYKMEA 96 (159)
Q Consensus 17 ~I~ap~~~VW~~l~d~~~~~~W~p~v~~~~~~~g~~~~~G~~r~~~~~~~~~~~g~~~~~~e~i~~~d~~~~~~~y~~~~ 96 (159)
.|..+++.+++++++...|+++.|+++++.+....|+++-......|+ |.-+ ....-.+ .++++ + +++....
T Consensus 75 ligysp~~my~vVS~V~~Y~~FVPwC~kS~V~~~~P~~~~kA~LeVGF--k~l~---E~y~S~V-t~~~p-~-l~kt~~~ 146 (227)
T KOG3177|consen 75 LIGYSPSEMYSVVSNVSEYHEFVPWCKKSDVTSRRPSGPLKADLEVGF--KPLD---ERYTSNV-TCVKP-H-LTKTVCA 146 (227)
T ss_pred hhCCCHHHHHHHHHhHHHhhccccceeccceeecCCCCCceeeEEecC--cccc---hhheeee-EEecc-c-ceEEeec
Confidence 478999999999999999999999998888776554444222333342 2111 1122233 44555 3 3444443
Q ss_pred cCcce-eeeEEEEEEEEcC--CCCeEEEEEEEEecCCCCChhHHHHHHHHHHHHHHHHHHHHHh
Q 036221 97 SNVGL-DGSVNSLKLIDYG--DDSTLVSWSFAIDPVEGASEDSIIDYLGFLYKSCINRIDSAIQ 157 (159)
Q Consensus 97 ~~~~~-~~~~~~~~l~~~~--~~~t~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~e 157 (159)
.. .+ ......|+++|.. ++.|.|.+..+|+-.+.+=.....-+......++.++..+++.
T Consensus 147 d~-rLF~~L~t~Wsf~pg~~~p~tc~ldf~v~FeF~S~lhs~va~~Ffd~V~~~~v~AF~~ra~ 209 (227)
T KOG3177|consen 147 DG-RLFNHLITIWSFKPGPNIPRTCTLDFSVSFEFKSLLHSQVATIFFDEVVKQMVNAFEQRAR 209 (227)
T ss_pred cc-cHHHhhhheeeeccCCCCCCeEEEEEEEEEEehhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 44 3457789999966 6789999888888654221111111223444455555554443
No 68
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=97.14 E-value=0.06 Score=39.80 Aligned_cols=138 Identities=9% Similarity=0.068 Sum_probs=82.2
Q ss_pred EEEeCChHHHHHHhhcCCCCCccccccceEEEcCCCCCCCcEEEEecc-ccccCCCCCcceEEEE-EEeeeCCCCEEEEE
Q 036221 16 GIVDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIRLVSG-FMFPQENGERSWIKER-LISMDSSSHSYDYK 93 (159)
Q Consensus 16 ~~I~ap~~~VW~~l~d~~~~~~W~p~v~~~~~~~g~~~~~G~~r~~~~-~~~~~~~g~~~~~~e~-i~~~d~~~~~~~y~ 93 (159)
..|+..++.||+.+.+...-.+|++.+++|++++.=+...--++.++. .+++. -+...-+.-+ +..+.+. + ++-.
T Consensus 53 gvv~~~~~ev~d~v~~~~~r~~Wd~~v~~~~Iie~Id~dt~I~~yvt~~~~~~i-ISpRDFVdv~~~~~~~d~-~-~s~g 129 (202)
T cd08902 53 GVVEDVYNRIVDHIRPGPYRLDWDSLMTSMDIIEEFEENCCVMRYTTAGQLLNI-ISPREFVDFSYTTQYEDG-L-LSCG 129 (202)
T ss_pred EEecCCHHHHHHHHhcccchhcccchhhheeHhhhhcCCcEEEEEEcccCCcCc-cCccceEEEEEEEEeCCC-e-EEEE
Confidence 456889999999999988788999999999877642111211234431 10000 0111222222 2233333 2 3222
Q ss_pred E--eccCcc-----eeeeEEEEEEEEcCC--CCeEEEEEEEEecCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 036221 94 M--EASNVG-----LDGSVNSLKLIDYGD--DSTLVSWSFAIDPVEGASEDSIIDYLGFLYKSCINRIDSAI 156 (159)
Q Consensus 94 ~--~~~~~~-----~~~~~~~~~l~~~~~--~~t~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 156 (159)
+ ....+| ..++-+.|-+.|..+ ..|.++|-+..++.+.+-.......+....-....+|++++
T Consensus 130 vs~~~~~~ppg~VRgen~p~g~i~~Pl~~~p~k~~~t~~lq~DLkG~LPqsiIdq~~~~~~~~F~~~Lrk~~ 201 (202)
T cd08902 130 VSIEYEEARPNFVRGFNHPCGWFCVPLKDNPSHSLLTGYIQTDLRGMLPQSAVDTAMASTLVNFYSDLKKAL 201 (202)
T ss_pred eeecCCCCCCCeEeecccccEEEEEECCCCCCceEEEEEEEecCCCCccHHHHHHHhhHHHHHHHHHHHHhc
Confidence 2 222222 245666788888754 45889999998877544444567777788888888888876
No 69
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=96.99 E-value=0.058 Score=39.38 Aligned_cols=143 Identities=14% Similarity=0.085 Sum_probs=81.1
Q ss_pred eEEEEEEEEeCChHHHHHHhhcCCCCCccccccceEEEcCCCCCCCcEEEEec-cccc--cCCCCCcceEEEEEEeeeCC
Q 036221 10 WRGSVGGIVDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIRLVS-GFMF--PQENGERSWIKERLISMDSS 86 (159)
Q Consensus 10 ~~~~~s~~I~ap~~~VW~~l~d~~~~~~W~p~v~~~~~~~g~~~~~G~~r~~~-~~~~--~~~~g~~~~~~e~i~~~d~~ 86 (159)
+.-.....|+++++.+...+.+-.. +|.+.+.++++++--+.. ..+.... ...+ |.. + ...+.-+....+.+
T Consensus 46 ~~~k~~~~v~~~~~~~~~~~~~~~~--~Wd~~~~~~~~le~~~~~-~~i~~~~~~~~~~~p~~-~-RDfv~~~~~~~~~~ 120 (206)
T PF01852_consen 46 KMFKAEGVVPASPEQVVEDLLDDRE--QWDKMCVEAEVLEQIDED-TDIVYFVMKSPWPGPVS-P-RDFVFLRSWRKDED 120 (206)
T ss_dssp EEEEEEEEESSCHHHHHHHHHCGGG--HHSTTEEEEEEEEEEETT-EEEEEEEEE-CTTTTSS-E-EEEEEEEEEEECTT
T ss_pred eEEEEEEEEcCChHHHHHHHHhhHh--hcccchhhheeeeecCCC-CeEEEEEecccCCCCCC-C-cEEEEEEEEEEecc
Confidence 4445566899999977777765443 899999888766531111 2222221 1101 111 1 12222233233233
Q ss_pred -CCEEEEEEeccC-c-c-------eeeeEEEEEEEEcCCCCeEEEEEEEEecCCCCChhH-HHHHHHHHHHHHHHHHHHH
Q 036221 87 -SHSYDYKMEASN-V-G-------LDGSVNSLKLIDYGDDSTLVSWSFAIDPVEGASEDS-IIDYLGFLYKSCINRIDSA 155 (159)
Q Consensus 87 -~~~~~y~~~~~~-~-~-------~~~~~~~~~l~~~~~~~t~v~w~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~ 155 (159)
...+..+-+..+ . + ...+.+.|.++|.+++.|+|++....++.+. .... +...+....-..++++++.
T Consensus 121 ~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~~~~~vt~~~~~D~~G~-iP~~~~n~~~~~~~~~~~~~~~~~ 199 (206)
T PF01852_consen 121 GTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGDGRTRVTYVSQVDPKGW-IPSWLVNMVVKSQPPNFLKNLRKA 199 (206)
T ss_dssp SEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETTCEEEEEEEEEEESSSS-SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEeeeccccccccccCcceeeeeeEeEEEEEccCCCceEEEEEEECCCCC-ChHHHHHHHHHHhHHHHHHHHHHH
Confidence 223333333211 1 1 2356678999999888899999999887653 3333 4445567777788888887
Q ss_pred Hhh
Q 036221 156 IQK 158 (159)
Q Consensus 156 ~e~ 158 (159)
+++
T Consensus 200 ~~~ 202 (206)
T PF01852_consen 200 LKK 202 (206)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 70
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=96.91 E-value=0.1 Score=38.74 Aligned_cols=140 Identities=16% Similarity=0.090 Sum_probs=85.5
Q ss_pred ceEEEEEEEEeCChHHHHHHhhcCCCCCccccccceEEEcCCC--CCCCcEEEEeccccccCCCCCcceEEEEEEeeeC-
Q 036221 9 KWRGSVGGIVDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGD--EGVPGYIRLVSGFMFPQENGERSWIKERLISMDS- 85 (159)
Q Consensus 9 ~~~~~~s~~I~ap~~~VW~~l~d~~~~~~W~p~v~~~~~~~g~--~~~~G~~r~~~~~~~~~~~g~~~~~~e~i~~~d~- 85 (159)
.|++ +++|++|+..|-..+-+ ..++|...+.+.++++-- ...++..+ +.. |.|.. ....+..+-...|.
T Consensus 53 ~~r~--~~ei~~~p~~VL~~vl~--~R~~WD~~~~~~~~ie~ld~~tdi~~y~-~~~-~~P~~--~RD~v~~R~w~~~~~ 124 (205)
T cd08909 53 LWKV--SVEVEAPPSVVLNRVLR--ERHLWDEDFLQWKVVETLDKQTEVYQYV-LNC-MAPHP--SRDFVVLRSWRTDLP 124 (205)
T ss_pred EEEE--EEEeCCCHHHHHHHHHh--hHhhHHhhcceeEEEEEeCCCcEEEEEE-eec-CCCCC--CCEEEEEEEEEEeCC
Confidence 5664 67889999999887765 567899888766655432 22333222 221 22321 12333333333332
Q ss_pred -CCCEEEEEEeccC-c---c---eeeeEEEEEEEEcCCCCeEEEEEEEEecCCCCChhHHHHHHHHHHHHHHHHHHHHHh
Q 036221 86 -SSHSYDYKMEASN-V---G---LDGSVNSLKLIDYGDDSTLVSWSFAIDPVEGASEDSIIDYLGFLYKSCINRIDSAIQ 157 (159)
Q Consensus 86 -~~~~~~y~~~~~~-~---~---~~~~~~~~~l~~~~~~~t~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~e 157 (159)
.+..+.+.-+..+ . + .....+-|.++|.++++|+|++-...++.+ -......+.++.....-+.+|+.-+.
T Consensus 125 ~G~~vi~~~Sv~H~~~p~~g~VRa~~~~~gylI~P~~~g~trvt~i~~vDpkG-~~P~W~~n~~g~~~~~~~~~~r~sf~ 203 (205)
T cd08909 125 KGACSLVSVSVEHEEAPLLGGVRAVVLDSQYLIEPCGSGKSRLTHICRVDLKG-HSPEWYNKGFGHLCAAEAARIRNSFQ 203 (205)
T ss_pred CCcEEEEEecCCCCcCCCCCcEEEEEEcCcEEEEECCCCCEEEEEEEEecCCC-CChHHHHHhHHHHHHHHHHHHHhhcc
Confidence 2222222222221 1 1 223567789999988899999999999763 56677888888888888888887654
No 71
>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function. It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.
Probab=96.40 E-value=0.17 Score=35.63 Aligned_cols=90 Identities=13% Similarity=0.281 Sum_probs=52.3
Q ss_pred hHHHHHHhh-cCCCCCccccccceEEEcCCCCCCCcEEEEeccccccCCCCCcceEEEEEEeeeCCCCEEEEEEeccCcc
Q 036221 22 INKVWTIVS-QTKKLPEWMPMVERCTDLAGDEGVPGYIRLVSGFMFPQENGERSWIKERLISMDSSSHSYDYKMEASNVG 100 (159)
Q Consensus 22 ~~~VW~~l~-d~~~~~~W~p~v~~~~~~~g~~~~~G~~r~~~~~~~~~~~g~~~~~~e~i~~~d~~~~~~~y~~~~~~~~ 100 (159)
.+.||+-|. .-.+...+.|.+.+|++++.. ...-.|.+. + ++ ..++|+++-. ++ +++.| .. . +
T Consensus 20 r~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~--~~~~~R~v~-----f-g~--~~v~E~v~~~-~~-~~V~f--~~-~-~ 83 (149)
T PF08982_consen 20 REQLWRGLVLKARNPQLFVPGIDSCEVLSES--DTVLTREVT-----F-GG--ATVRERVTLY-PP-ERVDF--AQ-H-D 83 (149)
T ss_dssp HHHHHHHHHHHHH-GGGT-TT--EEEEEEE---SSEEEEEEE-----E-TT--EEEEEEEEEE-TT-TEEEE--SS-S-B
T ss_pred HHHHHHHHHHHHhChhhCccccCeEEEEecC--CCeEEEEEE-----E-CC--cEEEEEEEEe-CC-cEEEE--Ec-C-C
Confidence 457999766 567788999999999988864 334567775 2 22 5888988655 55 78888 21 1 1
Q ss_pred eeeeEEEEEEEEcCCCCeEEEEEEEEecC
Q 036221 101 LDGSVNSLKLIDYGDDSTLVSWSFAIDPV 129 (159)
Q Consensus 101 ~~~~~~~~~l~~~~~~~t~v~w~~~~~~~ 129 (159)
...-++.|+..+++.--+++.++...+
T Consensus 84 --Gs~lt~~I~e~~~g~L~ltf~ye~~~p 110 (149)
T PF08982_consen 84 --GSSLTNIISEPEPGDLFLTFTYEWRLP 110 (149)
T ss_dssp --EEEEEEEEEEEETTEEEEEEEEEEE--
T ss_pred --CCEEEEEEecCCCCcEEEEEEEEeccc
Confidence 233445555544454455655555543
No 72
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=96.03 E-value=0.46 Score=36.03 Aligned_cols=141 Identities=9% Similarity=0.094 Sum_probs=74.5
Q ss_pred EEEEEEe-CChHHHHHHhhcCCCCCccccccceEEEcCCCCCCCcEEEEeccccccCCCCCcceEEEE-EEeeeCCC---
Q 036221 13 SVGGIVD-APINKVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIRLVSGFMFPQENGERSWIKER-LISMDSSS--- 87 (159)
Q Consensus 13 ~~s~~I~-ap~~~VW~~l~d~~~~~~W~p~v~~~~~~~g~~~~~G~~r~~~~~~~~~~~g~~~~~~e~-i~~~d~~~--- 87 (159)
.+..+|+ +|++.+.++|.|.+...+|...+.++++++-.....--.+......+|+.+ ...+.-+ +...++..
T Consensus 55 Ka~~~v~~vt~~~~~~~l~D~~~r~~Wd~~~~~~~vie~l~~~~~I~Y~~~k~PwPvs~--RD~V~~~~~~~~~d~~~~~ 132 (235)
T cd08872 55 KATHAVKGVTGHEVCHYFFDPDVRMDWETTLENFHVVETLSQDTLIFHQTHKRVWPAAQ--RDALFVSHIRKIPALEEPN 132 (235)
T ss_pred EEEEEECCCCHHHHHHHHhChhhHHHHHhhhheeEEEEecCCCCEEEEEEccCCCCCCC--cEEEEEEEEEecCcccccc
Confidence 3444666 999999999999999999999988887655321111112222222123322 1222222 22222211
Q ss_pred ---C-E-EEEEEeccCccee-ee-EEE-----------------EEEEEcCCCCeEEEEEEEEecCCCCChhH-HHHHHH
Q 036221 88 ---H-S-YDYKMEASNVGLD-GS-VNS-----------------LKLIDYGDDSTLVSWSFAIDPVEGASEDS-IIDYLG 142 (159)
Q Consensus 88 ---~-~-~~y~~~~~~~~~~-~~-~~~-----------------~~l~~~~~~~t~v~w~~~~~~~~~~~~~~-~~~~~~ 142 (159)
. . +..++.....|.. ++ ++. +.+++ ++++|+++|....+|-+ ..... +....+
T Consensus 133 ~~~~~vii~~Sv~h~~~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~-~~~~~~ity~~~~dPgG-~iP~wvvn~~~k 210 (235)
T cd08872 133 AHDTWIVCNFSVDHDSAPLNNKCVRAKLTVAMICQTFVSPPDGNQEITR-DNILCKITYVANVNPGG-WAPASVLRAVYK 210 (235)
T ss_pred CCCeEEEEEecccCccCCCCCCeEEEEEEeeeeeeeeeecCCCcccccC-CCCeEEEEEEEEeCCCC-CccHHHHHHHHH
Confidence 1 1 2333332222221 11 111 23444 45789999998888653 33333 444556
Q ss_pred HHHHHHHHHHHHHHh
Q 036221 143 FLYKSCINRIDSAIQ 157 (159)
Q Consensus 143 ~~~~~~l~~l~~~~e 157 (159)
+.+-.+|+.|-+.+.
T Consensus 211 ~~~P~~l~~~~~~~~ 225 (235)
T cd08872 211 REYPKFLKRFTSYVQ 225 (235)
T ss_pred hhchHHHHHHHHHHH
Confidence 777777777766543
No 73
>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=95.62 E-value=0.48 Score=33.12 Aligned_cols=91 Identities=11% Similarity=0.218 Sum_probs=59.1
Q ss_pred hHHHHHHhh-cCCCCCccccccceEEEcCCCCCCCcEEEEeccccccCCCCCcceEEEEEEeeeCCCCEEEEEEeccCcc
Q 036221 22 INKVWTIVS-QTKKLPEWMPMVERCTDLAGDEGVPGYIRLVSGFMFPQENGERSWIKERLISMDSSSHSYDYKMEASNVG 100 (159)
Q Consensus 22 ~~~VW~~l~-d~~~~~~W~p~v~~~~~~~g~~~~~G~~r~~~~~~~~~~~g~~~~~~e~i~~~d~~~~~~~y~~~~~~~~ 100 (159)
.+.+|.-|- .-.+...+.|.+.+|++++..+. -..|.+. +.+ ..++|+++- +++ .++.|.+..+ +
T Consensus 19 r~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~~~--~l~Rel~-----f~~---~~v~e~vt~-~~~-~~v~f~~~~~--g 84 (141)
T cd08863 19 RAQLWRGLVLRAREPQLFVPGLDRCEVLSESGT--VLERELT-----FGP---AKIRETVTL-EPP-SRVHFLQADA--G 84 (141)
T ss_pred HHHHHhHHHhhhCCchhcccccceEEEEecCCC--EEEEEEE-----ECC---ceEEEEEEe-cCC-cEEEEEecCC--C
Confidence 468999665 67888899999999999886532 2347665 222 478888855 465 7999998751 1
Q ss_pred eeeeEEEEEEEEcCCCCeEEEEEEEEecC
Q 036221 101 LDGSVNSLKLIDYGDDSTLVSWSFAIDPV 129 (159)
Q Consensus 101 ~~~~~~~~~l~~~~~~~t~v~w~~~~~~~ 129 (159)
..-+..++.-.++.--+++.++...+
T Consensus 85 ---~~l~~~iee~~~g~L~lrf~ye~~~p 110 (141)
T cd08863 85 ---GTLTNTIEEPEDGALYLRFVYETTLP 110 (141)
T ss_pred ---CeEEEEeccCCCCcEEEEEEEEecCC
Confidence 33444555544555555555555544
No 74
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=80.85 E-value=21 Score=26.61 Aligned_cols=139 Identities=13% Similarity=0.103 Sum_probs=73.1
Q ss_pred ceEEEEEEEEeCChHHHHHHhhcCCCCCccccccceEEEcCC--CCCCCcEEEEeccccccCCCCCcceEEEEEEeeeCC
Q 036221 9 KWRGSVGGIVDAPINKVWTIVSQTKKLPEWMPMVERCTDLAG--DEGVPGYIRLVSGFMFPQENGERSWIKERLISMDSS 86 (159)
Q Consensus 9 ~~~~~~s~~I~ap~~~VW~~l~d~~~~~~W~p~v~~~~~~~g--~~~~~G~~r~~~~~~~~~~~g~~~~~~e~i~~~d~~ 86 (159)
.|+.++++ =+.|++.+.++|.| -..|.+.+.+.+.++- +.-.+|. ..+.. |.|..+ ...+..|--.-|.+
T Consensus 53 lwk~s~ei-~~~p~~vl~rvL~d---R~~WD~~m~e~~~Ie~Ld~n~dI~y-Y~~~~-~~p~p~--RDfv~lRsW~~~l~ 124 (205)
T cd08907 53 LWKVSTEV-EAPPSVVLQRVLRE---RHLWDEDLLHSQVIEALENNTEVYH-YVTDS-MAPHPR--RDFVVLRMWRSDLP 124 (205)
T ss_pred EEEEEEEe-cCCCHHHHHHHhhc---hhhhhHHHHhhhhheeecCCCEEEE-EEecC-CCCCCC--ceEEEEEEEccCCC
Confidence 55554443 25567778888888 4578887755543331 2334442 22221 222221 12333332111222
Q ss_pred --CC-EEEEEEeccCcc------eeeeEEEEEEEEcCCCCeEEEEEEEEecCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 036221 87 --SH-SYDYKMEASNVG------LDGSVNSLKLIDYGDDSTLVSWSFAIDPVEGASEDSIIDYLGFLYKSCINRIDSAI 156 (159)
Q Consensus 87 --~~-~~~y~~~~~~~~------~~~~~~~~~l~~~~~~~t~v~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 156 (159)
.. .+.+++.....| ...+...|-++|.|.++|+|++-...++.+ -......+..+.....-+.+|+.-+
T Consensus 125 ~g~~iI~~~SV~H~~~pp~~gVRa~~l~sgYlIep~g~g~s~ltyi~rvD~rG-~~P~Wynk~~g~~~a~~l~~ir~sF 202 (205)
T cd08907 125 RGGCLLVSQSVDHDNPQLEAGVRAVLLTSQYLIEPCGMGRSRLTHICRADLRG-RSPDWYNKVFGHLCAMEVARIRDSF 202 (205)
T ss_pred CCCEEEEEecccCCcCCCCCCeEEEEEeccEEEEECCCCCeEEEEEEEeCCCC-CCcHHHHHhHHHHHHHHHHHHHhhc
Confidence 11 123344332111 234566788999998999999999888763 3444455555566666666666543
No 75
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=78.99 E-value=46 Score=29.52 Aligned_cols=112 Identities=17% Similarity=0.181 Sum_probs=60.6
Q ss_pred EEEeCChHHHHHHhhcCC-CCCccccccceEEEcCCCCC--CCcEEEEec-cccccCCCCCcceEEEEE-EeeeCCCCEE
Q 036221 16 GIVDAPINKVWTIVSQTK-KLPEWMPMVERCTDLAGDEG--VPGYIRLVS-GFMFPQENGERSWIKERL-ISMDSSSHSY 90 (159)
Q Consensus 16 ~~I~ap~~~VW~~l~d~~-~~~~W~p~v~~~~~~~g~~~--~~G~~r~~~-~~~~~~~~g~~~~~~e~i-~~~d~~~~~~ 90 (159)
-+|+|+++.||+.|.+.. .-.+|...+.++++++--++ .+.. ...+ +. ++.--....-+.-+. ...++....+
T Consensus 233 GVV~aspE~Ifd~Vm~~~~~R~eWD~~~~~~~vIE~ID~htdI~Y-~~~~~~~-~~~~ispRDFV~~Rywrr~eDGsYvi 310 (719)
T PLN00188 233 GVVEATCEEIFELVMSMDGTRFEWDCSFQYGSLVEEVDGHTAILY-HRLQLDW-FPMFVWPRDLCYVRYWRRNDDGSYVV 310 (719)
T ss_pred EEecCCHHHHHHHHhccCcccccchhcccceEEEEEecCCeEEEE-EEecccc-ccCccCcceeEEEEEEEEcCCCcEEE
Confidence 468999999999998665 45689999988876653211 2211 1121 10 000001112222222 2333332333
Q ss_pred EEEEecc---Cc--c---eeeeEEEEEEEEcC----CCCeEEEEEEEEecC
Q 036221 91 DYKMEAS---NV--G---LDGSVNSLKLIDYG----DDSTLVSWSFAIDPV 129 (159)
Q Consensus 91 ~y~~~~~---~~--~---~~~~~~~~~l~~~~----~~~t~v~w~~~~~~~ 129 (159)
.+.-+.. +. + .....+-|.+.|+. ..+|.|+|-...++.
T Consensus 311 l~~Sv~Hp~cPP~kG~VRg~~~pGGwiIsPL~~~~g~~r~lv~~~lqtDlk 361 (719)
T PLN00188 311 LFRSREHENCGPQPGFVRAHLESGGFNISPLKPRNGRPRTQVQHLMQIDLK 361 (719)
T ss_pred eeeeeecCCCCCCCCeEEEEEeCCEEEEEECCCCCCCCceEEEEEEEEccC
Confidence 4443332 11 1 23445778888852 257999999999864
No 76
>KOG2936 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.76 E-value=45 Score=26.32 Aligned_cols=109 Identities=12% Similarity=0.262 Sum_probs=60.3
Q ss_pred EEEeCChHHHHHHhhcCCCCCccccccceEEEcCCCCCCCcEEEEeccccccCCCCCcceEEEEEEeeeCCCC-EEEEEE
Q 036221 16 GIVDAPINKVWTIVSQTKKLPEWMPMVERCTDLAGDEGVPGYIRLVSGFMFPQENGERSWIKERLISMDSSSH-SYDYKM 94 (159)
Q Consensus 16 ~~I~ap~~~VW~~l~d~~~~~~W~p~v~~~~~~~g~~~~~G~~r~~~~~~~~~~~g~~~~~~e~i~~~d~~~~-~~~y~~ 94 (159)
.++++|++.++++|.|-.++..|...-.. ++.+++ |....+ +| .+.=++++++++.+ .+.|++
T Consensus 179 ~tfn~~~~eLy~~fld~~rv~~wt~S~a~---l~~~~~--g~f~lf--------~G---nVtg~~~~~e~~K~Iv~kWrl 242 (301)
T KOG2936|consen 179 ATFNCRVDELYEIFLDPERVKAWTRSPAE---LEADPG--GKFSLF--------DG---NVTGEFLELEKNKKIVMKWRL 242 (301)
T ss_pred hhcCCCHHHHHHHHhcHHHHHHhcCChhh---cccCCC--CceEEe--------cc---cceeeeeeecCCCeEEEEEec
Confidence 46899999999999998888888763222 333333 222323 23 34556667777733 336666
Q ss_pred eccCcceeeeEEEEEEEEcCCCCeEEEEEEEEecCCCCChhHHHHHHHHH
Q 036221 95 EASNVGLDGSVNSLKLIDYGDDSTLVSWSFAIDPVEGASEDSIIDYLGFL 144 (159)
Q Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~~t~v~w~~~~~~~~~~~~~~~~~~~~~~ 144 (159)
..=+-+ .+++-++++...+ +.|.+... ...++--..+.++...++.
T Consensus 243 ~~Wp~~-~~atI~~~f~~~~-~~t~l~~~--~kgVP~~eee~~~~~wq~y 288 (301)
T KOG2936|consen 243 KSWPDG-HDATITLTFYESQ-GETKLQVK--QKGVPIGEEENTRQGWQEY 288 (301)
T ss_pred ccCCCC-ccceEEEEEecCC-CceEEEEE--ecCCCcchhHHHHhhHHHH
Confidence 542222 2344455555543 66777644 3333212344454444443
No 77
>KOG4059 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.31 E-value=7.2 Score=27.75 Aligned_cols=29 Identities=34% Similarity=0.639 Sum_probs=22.4
Q ss_pred cccccccceEEEEEEEEeCChHHHHHHhh
Q 036221 2 AFETKQGKWRGSVGGIVDAPINKVWTIVS 30 (159)
Q Consensus 2 ~~~~~~~~~~~~~s~~I~ap~~~VW~~l~ 30 (159)
+||..-..|+|.+...+.++-|.||..+=
T Consensus 59 dFan~S~~W~G~vATI~~t~GdeVWG~vW 87 (193)
T KOG4059|consen 59 DFANESAGWSGSVATIVPTQGDEVWGTVW 87 (193)
T ss_pred eccccccccccceeEEecCCCCeEEEEEE
Confidence 46666677888888888888888887664
No 78
>PF08417 PaO: Pheophorbide a oxygenase; InterPro: IPR013626 This domain is found in bacterial and plant proteins to the C terminus of a Rieske 2Fe-2S domain (IPR005806 from INTERPRO). One of the proteins the domain is found in is Pheophorbide a oxygenase (PaO) which seems to be a key regulator of chlorophyll catabolism. Arabidopsis PaO (AtPaO) is a Rieske-type 2Fe-2S enzyme that is identical to Arabidopsis accelerated cell death 1 and homologous to lethal leaf spot 1 (LLS1) of maize [], in which the domain described here is also found. ; GO: 0010277 chlorophyllide a oxygenase [overall] activity, 0055114 oxidation-reduction process
Probab=28.62 E-value=1.6e+02 Score=18.56 Aligned_cols=25 Identities=12% Similarity=0.201 Sum_probs=19.7
Q ss_pred eEEEEEEEEcCCCCeEEEEEEEEec
Q 036221 104 SVNSLKLIDYGDDSTLVSWSFAIDP 128 (159)
Q Consensus 104 ~~~~~~l~~~~~~~t~v~w~~~~~~ 128 (159)
....+-..|.++|.|++.|++-.+.
T Consensus 23 ~~~~~~~vP~~pG~~Rli~r~~~~f 47 (92)
T PF08417_consen 23 LHQVFYCVPTGPGRCRLIWRFPRNF 47 (92)
T ss_pred EEEEEEEEECCCCeEEEEEEehhhh
Confidence 4445667899999999999987665
No 79
>PF06037 DUF922: Bacterial protein of unknown function (DUF922); InterPro: IPR010321 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=28.40 E-value=2.2e+02 Score=20.19 Aligned_cols=24 Identities=0% Similarity=-0.179 Sum_probs=14.2
Q ss_pred EEEEEEEcCCCCeEE-----EEEEEEecCC
Q 036221 106 NSLKLIDYGDDSTLV-----SWSFAIDPVE 130 (159)
Q Consensus 106 ~~~~l~~~~~~~t~v-----~w~~~~~~~~ 130 (159)
.++...+. +++|.| +....+..|.
T Consensus 39 w~~~~~~~-~~~C~i~~~~v~l~itytlPr 67 (161)
T PF06037_consen 39 WRRDYEPQ-GGRCRITSAKVKLDITYTLPR 67 (161)
T ss_pred EEEEEEEe-CCceEEEeeeEEEEEEEECCC
Confidence 34445555 467776 6666676653
No 80
>PF08379 Bact_transglu_N: Bacterial transglutaminase-like N-terminal region; InterPro: IPR013589 This region is found towards the N terminus of various archaeal and bacterial hypothetical proteins. Some of these are annotated as being transglutaminase-like proteins, and in fact contain a transglutaminase-like superfamily domain (IPR002931 from INTERPRO).
Probab=21.00 E-value=2.1e+02 Score=17.34 Aligned_cols=39 Identities=31% Similarity=0.571 Sum_probs=23.4
Q ss_pred CEEEEEEeccCcceeeeEEEEEEEEcCC-CCeEEEEEEEEecC
Q 036221 88 HSYDYKMEASNVGLDGSVNSLKLIDYGD-DSTLVSWSFAIDPV 129 (159)
Q Consensus 88 ~~~~y~~~~~~~~~~~~~~~~~l~~~~~-~~t~v~w~~~~~~~ 129 (159)
|...|+-.. |+......++|.|.++ ++..+.|...++|.
T Consensus 6 H~T~Y~Y~~---pV~~~~~~lrl~P~~~~~Q~v~~~~l~i~P~ 45 (82)
T PF08379_consen 6 HRTRYRYDA---PVSLSPHRLRLTPRSDPGQRVLSWSLTIEPE 45 (82)
T ss_pred EEEEEEcCC---hHHhceeeeEEECCCCCCccEEEEEEEEcCC
Confidence 344444433 4445667778888654 44667777777763
No 81
>cd08884 RHO_alpha_C_GbcA-like C-terminal catalytic domain of GbcA (glycine betaine catabolism A) from Pseudomonas aeruginosa PAO1 and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of GbcA (glycine betaine catabolism A) from Pseudomonas aeruginosa PAO1 and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components an
Probab=20.55 E-value=3.4e+02 Score=19.61 Aligned_cols=26 Identities=23% Similarity=0.489 Sum_probs=21.3
Q ss_pred eeEEEEEEEEcCCCCeEEEEEEEEec
Q 036221 103 GSVNSLKLIDYGDDSTLVSWSFAIDP 128 (159)
Q Consensus 103 ~~~~~~~l~~~~~~~t~v~w~~~~~~ 128 (159)
.+...+++.|.+.+.|++.+..-+..
T Consensus 116 d~~~~~~~~P~~p~~t~~~~~~~~~~ 141 (205)
T cd08884 116 DHVVTFRVLPLSPDETLVRCKWLVHP 141 (205)
T ss_pred CEEEEEEEEeCCCCceEEEEEEEECC
Confidence 46778899999999999998866654
No 82
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=20.48 E-value=1.2e+02 Score=15.93 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=15.4
Q ss_pred eEEEEEEEEeCChHHHHHHhh
Q 036221 10 WRGSVGGIVDAPINKVWTIVS 30 (159)
Q Consensus 10 ~~~~~s~~I~ap~~~VW~~l~ 30 (159)
|.|.+.+-=+.|+|++.+++.
T Consensus 12 Y~G~V~Vfd~v~~~Ka~~im~ 32 (36)
T PF06200_consen 12 YGGQVCVFDDVPPDKAQEIML 32 (36)
T ss_pred ECCEEEEeCCCCHHHHHHHHH
Confidence 556665555699999998765
Done!