BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036222
(298 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AGZ|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGZ|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 190
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 101/162 (62%), Gaps = 2/162 (1%)
Query: 134 GCTKKIKITRDAITSSGQLIQDEE-VLSIKVKPGWKKGTKITFEGKGNEVPGTQPADIIF 192
GCTKK+KI+ + G+ I++E+ +L+I+VK GWK+GTKITF +G++ PADI+F
Sbjct: 28 GCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSNNIPADIVF 87
Query: 193 LIAEKRHHLFRRDGDDLELAVEIPLVKALTGCTISVPLLGGEKMDLSIDDEIIHPGYVKM 252
++ +K H++F+RDG D+ I L +AL GCT++VP L G + + D +I PG +
Sbjct: 88 VLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVFKD-VIRPGMRRK 146
Query: 253 IEGQGMPTKDPEGARGNLKLLFLVDFPTELTDEQRSNVLGIL 294
+ G+G+P RG+L + F V FP + R+ + +L
Sbjct: 147 VPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVL 188
>pdb|3AGX|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGX|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGY|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGY|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 181
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 101/162 (62%), Gaps = 2/162 (1%)
Query: 134 GCTKKIKITRDAITSSGQLIQDEE-VLSIKVKPGWKKGTKITFEGKGNEVPGTQPADIIF 192
GCTKK+KI+ + G+ I++E+ +L+I+VK GWK+GTKITF +G++ PADI+F
Sbjct: 19 GCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSNNIPADIVF 78
Query: 193 LIAEKRHHLFRRDGDDLELAVEIPLVKALTGCTISVPLLGGEKMDLSIDDEIIHPGYVKM 252
++ +K H++F+RDG D+ I L +AL GCT++VP L G + + D +I PG +
Sbjct: 79 VLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVFKD-VIRPGMRRK 137
Query: 253 IEGQGMPTKDPEGARGNLKLLFLVDFPTELTDEQRSNVLGIL 294
+ G+G+P RG+L + F V FP + R+ + +L
Sbjct: 138 VPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVL 179
>pdb|2QLD|A Chain A, Human Hsp40 Hdj1
Length = 183
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 101/162 (62%), Gaps = 2/162 (1%)
Query: 134 GCTKKIKITRDAITSSGQLIQDEE-VLSIKVKPGWKKGTKITFEGKGNEVPGTQPADIIF 192
GCTKK+KI+ + G+ I++E+ +L+I+VK GWK+GTKITF +G++ PADI+F
Sbjct: 21 GCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSNNIPADIVF 80
Query: 193 LIAEKRHHLFRRDGDDLELAVEIPLVKALTGCTISVPLLGGEKMDLSIDDEIIHPGYVKM 252
++ +K H++F+RDG D+ I L +AL GCT++VP L G + + D +I PG +
Sbjct: 81 VLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVFKD-VIRPGMRRK 139
Query: 253 IEGQGMPTKDPEGARGNLKLLFLVDFPTELTDEQRSNVLGIL 294
+ G+G+P RG+L + F V FP + R+ + +L
Sbjct: 140 VPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVL 181
>pdb|2Q2G|A Chain A, Crystal Structure Of Dimerization Domain Of Hsp40 From
Cryptosporidium Parvum, Cgd2_1800
pdb|2Q2G|B Chain B, Crystal Structure Of Dimerization Domain Of Hsp40 From
Cryptosporidium Parvum, Cgd2_1800
Length = 180
Score = 111 bits (277), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 63/157 (40%), Positives = 92/157 (58%), Gaps = 3/157 (1%)
Query: 133 FGCTKKIKITRDAITSSGQLIQDEEVLSIKVKPGWKKGTKITFEGKGN-EVPGTQPADII 191
G KKIK+TR ++ +E ++ +++KPGWK GTK+T+ G+G+ E PGT P D++
Sbjct: 19 LGKRKKIKVTRKRFIEH-KVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLV 77
Query: 192 FLIAEKRHHLFRRDGDDLELAVEIPLVKALTGCTISVPLLGGEKMDLSIDDEIIHPGYVK 251
+I K H F RD L V IPLV+ALTG T V L + + I EI++P K
Sbjct: 78 LIIQTKTHPRFTRDDCHLIXKVTIPLVRALTGFTCPVTTLDNRNLQIPI-KEIVNPKTRK 136
Query: 252 MIEGQGMPTKDPEGARGNLKLLFLVDFPTELTDEQRS 288
++ +G P K+ G +G+L L F + FP LT EQ+
Sbjct: 137 IVPNEGXPIKNQPGQKGDLILEFDICFPKSLTPEQKK 173
>pdb|1NLT|A Chain A, The Crystal Structure Of Hsp40 Ydj1
Length = 248
Score = 91.3 bits (225), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 86/143 (60%), Gaps = 4/143 (2%)
Query: 147 TSSGQLIQDE-EVLSIKVKPGWKKGTKITFEGKGNEVPGTQPADIIFLIAEKRHHLFRRD 205
+ +G+ +++E ++L + V+PG K G +I F+G+ ++ P P D++F+++E+ H F+RD
Sbjct: 101 SCNGKKVENERKILEVHVEPGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRD 160
Query: 206 GDDLELAVEIPLVKALTGCTISVPLLGGEKMDLSI-DDEIIHPGYVKMIEGQGMPTKDPE 264
GDDL EI L+ A+ G ++ + G+ + + I E+I PG K+IEG+GMP
Sbjct: 161 GDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPK-Y 219
Query: 265 GARGNLKLLFLVDFP-TELTDEQ 286
G GNL + F + P T E+
Sbjct: 220 GGYGNLIIKFTIKDPENHFTSEE 242
>pdb|1C3G|A Chain A, S. Cerevisiae Heat Shock Protein 40 Sis1
Length = 170
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 83/158 (52%), Gaps = 6/158 (3%)
Query: 134 GCTKKIKITRDAITSSGQLIQDEEVLSIKVKPGWKKGTKITFEGKGNEVPGT-QPADIIF 192
G K KI R + + Q + I++KPGWK GTKIT++ +G+ P T + + F
Sbjct: 17 GKKKSFKIGRKGPHGASEKTQ----IDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQF 72
Query: 193 LIAEKRHHLFRRDGDDLELAVEIPLVKALTGCTISVPLLGGEKMDLSIDDEIIHPGYVKM 252
+I EK H F+RDGDDL + + ++L G + ++ + G + LS + + P
Sbjct: 73 VIQEKSHPNFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLS-RVQPVQPSQTST 131
Query: 253 IEGQGMPTKDPEGARGNLKLLFLVDFPTELTDEQRSNV 290
GQGMPT RGNL + + VD+P L D Q+ +
Sbjct: 132 YPGQGMPTPKNPSQRGNLIVKYKVDYPISLNDAQKRAI 169
>pdb|2B26|A Chain A, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
pdb|2B26|B Chain B, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
pdb|2B26|C Chain C, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
Length = 173
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 83/158 (52%), Gaps = 6/158 (3%)
Query: 134 GCTKKIKITRDAITSSGQLIQDEEVLSIKVKPGWKKGTKITFEGKGNEVPGT-QPADIIF 192
G K KI R + + Q + I++KPGWK GTKIT++ +G+ P T + + F
Sbjct: 17 GKKKSFKIGRKGPHGASEKTQ----IDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQF 72
Query: 193 LIAEKRHHLFRRDGDDLELAVEIPLVKALTGCTISVPLLGGEKMDLSIDDEIIHPGYVKM 252
+I EK H F+RDGDDL + + ++L G + ++ + G + LS + + P
Sbjct: 73 VIQEKSHPNFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLS-RVQPVQPSQTST 131
Query: 253 IEGQGMPTKDPEGARGNLKLLFLVDFPTELTDEQRSNV 290
GQGMPT RGNL + + VD+P L D Q+ +
Sbjct: 132 YPGQGMPTPKNPSQRGNLIVKYKVDYPISLNDAQKRAI 169
>pdb|1XAO|A Chain A, Hsp40-Ydj1 Dimerization Domain
pdb|1XAO|B Chain B, Hsp40-Ydj1 Dimerization Domain
Length = 121
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Query: 202 FRRDGDDLELAVEIPLVKALTGCTISVPLLGGEKMDLSI-DDEIIHPGYVKMIEGQGMPT 260
F+RDGDDL EI L+ A+ G ++ + G+ + + I E+I PG K+IEG+GMP
Sbjct: 2 FKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPI 61
Query: 261 KDPEGARGNLKLLFLVDFP-TELTDEQR 287
G GNL + F + FP T E+
Sbjct: 62 PK-YGGYGNLIIKFTIKFPENHFTSEEN 88
>pdb|1WHB|A Chain A, Solution Structure Of The Rhodanese-Like Domain In Human
Ubiquitin Specific Protease 8 (Ubp8)
Length = 157
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 12/92 (13%)
Query: 217 LVKALTGCTISVPLLGGEKMD----------LSIDDEIIHPGYVKMIEGQGMP--TKDPE 264
L +T IS+ ++ +M LS+ +E I PG +P +KD
Sbjct: 22 LYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAHLPDDSKDTW 81
Query: 265 GARGNLKLLFLVDFPTELTDEQRSNVLGILED 296
RGN++ + L+D+ + D Q L L+D
Sbjct: 82 KKRGNVEYVVLLDWFSSAKDLQIGTTLRSLKD 113
>pdb|2GWF|A Chain A, Structure Of A Usp8-Nrdp1 Complex
pdb|2GWF|C Chain C, Structure Of A Usp8-Nrdp1 Complex
pdb|2GWF|E Chain E, Structure Of A Usp8-Nrdp1 Complex
Length = 157
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 12/93 (12%)
Query: 217 LVKALTGCTISVPLLGGEKMD----------LSIDDEIIHPGYVKMIEGQGMP--TKDPE 264
L +T IS+ ++ +M LS+ +E I PG +P +KD
Sbjct: 27 LYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAHLPDDSKDTW 86
Query: 265 GARGNLKLLFLVDFPTELTDEQRSNVLGILEDC 297
RGN++ + L+D+ + D Q L L+D
Sbjct: 87 KKRGNVEYVVLLDWFSSAKDLQIGTTLRSLKDA 119
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 157 EVLSIKVKPGWKKGTKITFEGKGNEVPGTQ---PADIIFLIAEKRHHLFRRDGDDLELAV 213
+ L++K+ G G +I +G+G PG D+ +I H LF G +LE+ +
Sbjct: 181 KTLNVKIPAGVVDGQRIRLKGQG--TPGENGGPNGDLWLVIHIAPHPLFDIVGHNLEIVL 238
Query: 214 EIPLVKALTGCTISVPLL 231
+ +A G ++VP L
Sbjct: 239 PLAPWEAALGAKVTVPTL 256
>pdb|2I5K|A Chain A, Crystal Structure Of Ugp1p
pdb|2I5K|B Chain B, Crystal Structure Of Ugp1p
Length = 488
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 193 LIAEKRHHLFRRDGDDLELAVEIPLVKAL--TGCTISVPLLGGEKMDLSIDDEIIHPGYV 250
LIA+ R LF +GD+L V++ ++ + TG + L + D+ I + G V
Sbjct: 221 LIAQGREILFVSNGDNLGATVDLKILNHMIETGAEYIMELTDKTRADVKGGTLISYDGQV 280
Query: 251 KMIEGQGMP 259
+++E +P
Sbjct: 281 RLLEVAQVP 289
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.138 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,698,800
Number of Sequences: 62578
Number of extensions: 284105
Number of successful extensions: 355
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 331
Number of HSP's gapped (non-prelim): 13
length of query: 298
length of database: 14,973,337
effective HSP length: 98
effective length of query: 200
effective length of database: 8,840,693
effective search space: 1768138600
effective search space used: 1768138600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)