BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036226
(566 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot
Length = 319
Score = 304 bits (778), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 151/312 (48%), Positives = 198/312 (63%), Gaps = 5/312 (1%)
Query: 260 NAVVGKDRFAKYKTINDALRAVPDXXXXXXXXXXXXXXXXENVRIEKPKWNVVMIGDGMN 319
N VV D YKT+++A+ A P+ ENV + K K N++ +GDG
Sbjct: 8 NVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRT 67
Query: 320 ETIVSGHRNFIDGTPTFSTATFAVFGQGFVARDMGFRNTAGPSKHQAVALMSTADHSVFH 379
TI++ +N DG+ TF++AT A G GF+ARD+ F+NTAG +KHQAVAL +D S F+
Sbjct: 68 STIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFY 127
Query: 380 RCQFDAYQDTLYAHSNRQFYSECNIYGTVDFIFGNSAAVLQNCKILPRRPMPGQKNTITA 439
RC AYQD+LY HSNRQF+ C I GTVDFIFGN+A VLQ+C I RRP GQKN +TA
Sbjct: 128 RCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQKNMVTA 187
Query: 440 QGKKDPNENTGIAIQNCTILPFGDLSGVE----TYLGRPWKNYSTTIIMQSMMGSFIHPS 495
QG+ DPN+NTGI IQ I DL V+ TYLGRPWK YS T++MQS + + I+P+
Sbjct: 188 QGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVINPA 247
Query: 496 GWLPWVGNSAPNTIFYSEFENYGAGSSMKKRVKWKGLRGI-SYKEAGKFTVRAFLQGDRW 554
GW PW GN A +T++Y E++N GAG++ RV WKG + I S EA FT +F+ G W
Sbjct: 248 GWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSW 307
Query: 555 ISDAGVAYKPGL 566
+ + GL
Sbjct: 308 LKATTFPFSLGL 319
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin
Methylesterase And Its Inhibitor Protein
Length = 317
Score = 303 bits (777), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 149/313 (47%), Positives = 198/313 (63%), Gaps = 5/313 (1%)
Query: 259 ANAVVGKDRFAKYKTINDALRAVPDXXXXXXXXXXXXXXXXENVRIEKPKWNVVMIGDGM 318
ANAVV +D Y+T+ +A+ A PD ENV + K N++++GDGM
Sbjct: 3 ANAVVAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGDGM 62
Query: 319 NETIVSGHRNFIDGTPTFSTATFAVFGQGFVARDMGFRNTAGPSKHQAVALMSTADHSVF 378
T ++G N +DG+ TF +AT A GQGF+ +D+ +NTAGP+K QAVAL AD SV
Sbjct: 63 YATTITGSLNVVDGSTTFRSATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMSVI 122
Query: 379 HRCQFDAYQDTLYAHSNRQFYSECNIYGTVDFIFGNSAAVLQNCKILPRRPMPGQKNTIT 438
+RC+ DAYQDTLYAHS RQFY + + GTVDFIFGN+A V Q C+++ R+P Q+N +T
Sbjct: 123 NRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKPGKYQQNMVT 182
Query: 439 AQGKKDPNENTGIAIQNCTILPFGDLSGV----ETYLGRPWKNYSTTIIMQSMMGSFIHP 494
AQG+ DPN+ TG +IQ C I+ DL V TYLGRPWK YS T++M+S +G I+P
Sbjct: 183 AQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGLINP 242
Query: 495 SGWLPWVGNSAPNTIFYSEFENYGAGSSMKKRVKWKGLRGIS-YKEAGKFTVRAFLQGDR 553
+GW W G+ A T++Y EF N G G+ KRVKW G I+ +A FTV +QG
Sbjct: 243 AGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGGS 302
Query: 554 WISDAGVAYKPGL 566
W+ GVAY GL
Sbjct: 303 WLRSTGVAYVDGL 315
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide V
pdb|2NTB|B Chain B, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide V
pdb|2NTP|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vi
pdb|2NTP|B Chain B, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vi
pdb|2NTQ|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vii
pdb|2NTQ|B Chain B, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vii
Length = 342
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 91/189 (48%), Gaps = 30/189 (15%)
Query: 365 QAVALMST--ADHSVFHRCQFDAYQDTLYAHSNRQFYSECNIYGTVDFIFGNSAAVLQNC 422
QAVAL T D + F YQDTLY R F+S+C I GTVDFIFG+ A+ NC
Sbjct: 129 QAVALYVTKSGDRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNC 188
Query: 423 KILPRRPMPGQKNTITA---QGKKDPNENTGIAIQNCTILPFGDLSGVETY-LGRPWKNY 478
++ R + ++ + N+ G+ I N ++ D ++Y LGRPW
Sbjct: 189 DLVSRYRADVKSGNVSGYLTAPSTNINQKYGLVITNSRVIRESDSVPAKSYGLGRPWHPT 248
Query: 479 ST--------------TIIMQSMMGSFIHPSGWLPWVG-NSAPNTIFYS-------EFEN 516
+T T+ + + M + I+ GW G + NTI+++ E+++
Sbjct: 249 TTFSDGRYADPNAIGQTVFLNTSMDNHIY--GWDKMSGKDKNGNTIWFNPEDSRFFEYKS 306
Query: 517 YGAGSSMKK 525
YGAG+++ K
Sbjct: 307 YGAGATVSK 315
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi
pdb|1QJV|B Chain B, Pectin Methylesterase Pema From Erwinia Chrysanthemi
Length = 342
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 91/189 (48%), Gaps = 30/189 (15%)
Query: 365 QAVALMST--ADHSVFHRCQFDAYQDTLYAHSNRQFYSECNIYGTVDFIFGNSAAVLQNC 422
QAVAL T D + F YQDTLY R F+S+C I GTVDFIFG+ A+ NC
Sbjct: 129 QAVALYVTKSGDRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNC 188
Query: 423 KILPRRPMPGQKNTITA---QGKKDPNENTGIAIQNCTILPFGDLSGVETY-LGRPWKNY 478
++ R + ++ + N+ G+ I N ++ D ++Y LGRPW
Sbjct: 189 DLVSRYRADVKSGNVSGYLTAPSTNINQKYGLVITNSRVIRESDSVPAKSYGLGRPWHPT 248
Query: 479 ST--------------TIIMQSMMGSFIHPSGWLPWVG-NSAPNTIFYS-------EFEN 516
+T T+ + + M + I+ GW G + NTI+++ E+++
Sbjct: 249 TTFSDGRYADPNAIGQTVFLNTSMDNHIY--GWDKMSGKDKNGNTIWFNPEDSRFFEYKS 306
Query: 517 YGAGSSMKK 525
YGAG+++ K
Sbjct: 307 YGAGAAVSK 315
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide I
pdb|2NSP|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide I
pdb|2NST|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Ii
pdb|2NST|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Ii
pdb|2NT6|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iii
pdb|2NT6|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iii
pdb|2NT9|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iv
pdb|2NT9|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iv
Length = 342
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 90/189 (47%), Gaps = 30/189 (15%)
Query: 365 QAVALMST--ADHSVFHRCQFDAYQDTLYAHSNRQFYSECNIYGTVDFIFGNSAAVLQNC 422
QAVAL T D + F YQ TLY R F+S+C I GTVDFIFG+ A+ NC
Sbjct: 129 QAVALYVTKSGDRAYFKDVSLVGYQATLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNC 188
Query: 423 KILPRRPMPGQKNTITA---QGKKDPNENTGIAIQNCTILPFGDLSGVETY-LGRPWKNY 478
++ R + ++ + N+ G+ I N ++ D ++Y LGRPW
Sbjct: 189 DLVSRYRADVKSGNVSGYLTAPSTNINQKYGLVITNSRVIRESDSVPAKSYGLGRPWHPT 248
Query: 479 ST--------------TIIMQSMMGSFIHPSGWLPWVG-NSAPNTIFYS-------EFEN 516
+T T+ + + M + I+ GW G + NTI+++ E+++
Sbjct: 249 TTFSDGRYADPNAIGQTVFLNTSMDNHIY--GWDKMSGKDKNGNTIWFNPEDSRFFEYKS 306
Query: 517 YGAGSSMKK 525
YGAG+++ K
Sbjct: 307 YGAGATVSK 315
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica
Length = 364
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 23/148 (15%)
Query: 303 RIEKPKWNVVMIGDGMNETIVSGHRNFIDGTP------TFSTATFAVFGQGFVARDMGFR 356
R+E + +V + G+ + T++ + P T ++T V F A ++ R
Sbjct: 73 RLEVARSHVTLKGENRDGTVIGANTAAGMLNPQGEKWGTSGSSTVLVNAPNFTAENLTIR 132
Query: 357 NT-----------AGPSK---HQAVALM--STADHSVFHRCQFDAYQDTLYAHS-NRQFY 399
N P+K QAVAL+ +D + F + + YQDTLY+ + +R ++
Sbjct: 133 NDFDFPANKKKADTDPTKLKDTQAVALLLAENSDKARFKAVKLEGYQDTLYSKTGSRSYF 192
Query: 400 SECNIYGTVDFIFGNSAAVLQNCKILPR 427
S+C I G VDFIFG+ V NC I+ R
Sbjct: 193 SDCEISGHVDFIFGSGITVFDNCNIVAR 220
>pdb|1HQA|A Chain A, Alkaline Phosphatase (H412q)
pdb|1HQA|B Chain B, Alkaline Phosphatase (H412q)
Length = 449
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 305 EKPKWNVVM-IGDGMNETIVSGHRNFIDGTPTF 336
+KP N+++ IGDGM ++ ++ RN+ +G F
Sbjct: 39 DKPAKNIILLIGDGMGDSEITAARNYAEGAGGF 71
>pdb|1ANJ|A Chain A, Alkaline Phosphatase (K328h)
pdb|1ANJ|B Chain B, Alkaline Phosphatase (K328h)
Length = 446
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 305 EKPKWNVVM-IGDGMNETIVSGHRNFIDGTPTF 336
+KP N+++ IGDGM ++ ++ RN+ +G F
Sbjct: 36 DKPAKNIILLIGDGMGDSEITAARNYAEGAGGF 68
>pdb|1ALH|A Chain A, Kinetics And Crystal Structure Of A Mutant E. Coli
Alkaline Phosphatase (Asp-369-->asn): A Mechanism
Involving One Zinc Per Active Site
pdb|1ALH|B Chain B, Kinetics And Crystal Structure Of A Mutant E. Coli
Alkaline Phosphatase (Asp-369-->asn): A Mechanism
Involving One Zinc Per Active Site
Length = 446
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 305 EKPKWNVVM-IGDGMNETIVSGHRNFIDGTPTF 336
+KP N+++ IGDGM ++ ++ RN+ +G F
Sbjct: 36 DKPAKNIILLIGDGMGDSEITAARNYAEGAGGF 68
>pdb|2ANH|A Chain A, Alkaline Phosphatase (D153h)
pdb|2ANH|B Chain B, Alkaline Phosphatase (D153h)
Length = 446
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 305 EKPKWNVVM-IGDGMNETIVSGHRNFIDGTPTF 336
+KP N+++ IGDGM ++ ++ RN+ +G F
Sbjct: 36 DKPAKNIILLIGDGMGDSEITAARNYAEGAGGF 68
>pdb|1HJK|A Chain A, Alkaline Phosphatase Mutant H331q
pdb|1HJK|B Chain B, Alkaline Phosphatase Mutant H331q
Length = 449
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 305 EKPKWNVVM-IGDGMNETIVSGHRNFIDGTPTF 336
+KP N+++ IGDGM ++ ++ RN+ +G F
Sbjct: 39 DKPAKNIILLIGDGMGDSEITAARNYAEGAGGF 71
>pdb|1ANI|A Chain A, Alkaline Phosphatase (D153h, K328h)
pdb|1ANI|B Chain B, Alkaline Phosphatase (D153h, K328h)
Length = 446
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 305 EKPKWNVVM-IGDGMNETIVSGHRNFIDGTPTF 336
+KP N+++ IGDGM ++ ++ RN+ +G F
Sbjct: 36 DKPAKNIILLIGDGMGDSEITAARNYAEGAGGF 68
>pdb|3CMR|A Chain A, E. Coli Alkaline Phosphatase Mutant R166s In Complex With
Phosphate
pdb|3CMR|B Chain B, E. Coli Alkaline Phosphatase Mutant R166s In Complex With
Phosphate
Length = 449
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 305 EKPKWNVVM-IGDGMNETIVSGHRNFIDGTPTF 336
+KP N+++ IGDGM ++ ++ RN+ +G F
Sbjct: 39 DKPAKNIILLIGDGMGDSEITAARNYAEGAGGF 71
>pdb|3BDG|B Chain B, Crystal Structure Of Wild-TypeT155V MIXED DIMER OF E. COLI
ALKALINE Phosphatase
Length = 458
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 305 EKPKWNVVM-IGDGMNETIVSGHRNFIDGTPTF 336
+KP N+++ IGDGM ++ ++ RN+ +G F
Sbjct: 40 DKPAKNIILLIGDGMGDSEITAARNYAEGAGGF 72
>pdb|1ELY|A Chain A, E. Coli Alkaline Phosphatase Mutant (S102c)
pdb|1ELY|B Chain B, E. Coli Alkaline Phosphatase Mutant (S102c)
Length = 449
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 305 EKPKWNVVM-IGDGMNETIVSGHRNFIDGTPTF 336
+KP N+++ IGDGM ++ ++ RN+ +G F
Sbjct: 39 DKPAKNIILLIGDGMGDSEITAARNYAEGAGGF 71
>pdb|1ALJ|A Chain A, Alkaline Phosphatase Mutant (H412n)
pdb|1ALJ|B Chain B, Alkaline Phosphatase Mutant (H412n)
pdb|1ALI|A Chain A, Alkaline Phosphatase Mutant (H412n)
pdb|1ALI|B Chain B, Alkaline Phosphatase Mutant (H412n)
Length = 449
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 305 EKPKWNVVM-IGDGMNETIVSGHRNFIDGTPTF 336
+KP N+++ IGDGM ++ ++ RN+ +G F
Sbjct: 39 DKPAKNIILLIGDGMGDSEITAARNYAEGAGGF 71
>pdb|1ED8|A Chain A, Structure Of E. Coli Alkaline Phosphatase Inhibited By The
Inorganic Phosphate At 1.75a Resolution
pdb|1ED8|B Chain B, Structure Of E. Coli Alkaline Phosphatase Inhibited By The
Inorganic Phosphate At 1.75a Resolution
pdb|1ED9|A Chain A, Structure Of E. Coli Alkaline Phosphatase Without The
Inorganic Phosphate At 1.75a Resolution
pdb|1ED9|B Chain B, Structure Of E. Coli Alkaline Phosphatase Without The
Inorganic Phosphate At 1.75a Resolution
pdb|1EW8|A Chain A, Alkaline Phosphatase (e.c. 3.1.3.1) Complex With
Phosphonoacetic Acid
pdb|1EW8|B Chain B, Alkaline Phosphatase (e.c. 3.1.3.1) Complex With
Phosphonoacetic Acid
pdb|1EW9|A Chain A, Alkaline Phosphatase (E.C. 3.1.3.1) Complex With
Mercaptomethyl Phosphonate
pdb|1EW9|B Chain B, Alkaline Phosphatase (E.C. 3.1.3.1) Complex With
Mercaptomethyl Phosphonate
pdb|1Y6V|A Chain A, Structure Of E. Coli Alkaline Phosphatase In Presence Of
Cobalt At 1.60 A Resolution
pdb|1Y6V|B Chain B, Structure Of E. Coli Alkaline Phosphatase In Presence Of
Cobalt At 1.60 A Resolution
pdb|3TG0|A Chain A, E. Coli Alkaline Phosphatase With Bound Inorganic
Phosphate
pdb|3TG0|B Chain B, E. Coli Alkaline Phosphatase With Bound Inorganic
Phosphate
pdb|3TG0|C Chain C, E. Coli Alkaline Phosphatase With Bound Inorganic
Phosphate
pdb|3TG0|D Chain D, E. Coli Alkaline Phosphatase With Bound Inorganic
Phosphate
Length = 449
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 305 EKPKWNVVM-IGDGMNETIVSGHRNFIDGTPTF 336
+KP N+++ IGDGM ++ ++ RN+ +G F
Sbjct: 39 DKPAKNIILLIGDGMGDSEITAARNYAEGAGGF 71
>pdb|1B8J|A Chain A, Alkaline Phosphatase Complexed With Vanadate
pdb|1B8J|B Chain B, Alkaline Phosphatase Complexed With Vanadate
pdb|2GA3|A Chain A, Structure Of S102t E. Coli Alkaline Phosphatase-Phosphate
Intermediate At 2.20a Resolution
pdb|2GA3|B Chain B, Structure Of S102t E. Coli Alkaline Phosphatase-Phosphate
Intermediate At 2.20a Resolution
Length = 449
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 305 EKPKWNVVM-IGDGMNETIVSGHRNFIDGTPTF 336
+KP N+++ IGDGM ++ ++ RN+ +G F
Sbjct: 39 DKPAKNIILLIGDGMGDSEITAARNYAEGAGGF 71
>pdb|3BDF|A Chain A, Crystal Structure Of Metal-Free E. Coli Alkaline
Phosphatase (T155v)
pdb|3BDF|B Chain B, Crystal Structure Of Metal-Free E. Coli Alkaline
Phosphatase (T155v)
pdb|3BDG|A Chain A, Crystal Structure Of Wild-TypeT155V MIXED DIMER OF E. COLI
ALKALINE Phosphatase
Length = 458
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 305 EKPKWNVVM-IGDGMNETIVSGHRNFIDGTPTF 336
+KP N+++ IGDGM ++ ++ RN+ +G F
Sbjct: 40 DKPAKNIILLIGDGMGDSEITAARNYAEGAGGF 72
>pdb|3DYC|A Chain A, Structure Of E322y Alkaline Phosphatase In Complex With
Inorganic Phosphate
pdb|3DYC|B Chain B, Structure Of E322y Alkaline Phosphatase In Complex With
Inorganic Phosphate
Length = 449
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 305 EKPKWNVVM-IGDGMNETIVSGHRNFIDGTPTF 336
+KP N+++ IGDGM ++ ++ RN+ +G F
Sbjct: 39 DKPAKNIILLIGDGMGDSEITAARNYAEGAGGF 71
>pdb|1AJD|A Chain A, Three-Dimensional Structure Of The D153g Mutant Of E. Coli
Alkaline Phosphatase: A Mutant With Weaker Magnesium
Binding And Increased Catalytic Activity
pdb|1AJD|B Chain B, Three-Dimensional Structure Of The D153g Mutant Of E. Coli
Alkaline Phosphatase: A Mutant With Weaker Magnesium
Binding And Increased Catalytic Activity
pdb|1AJC|A Chain A, Three-Dimensional Structure Of The D153g Mutant Of E. Coli
Alkaline Phosphatase: A Mutant With Weaker Magnesium
Binding And Increased Catalytic Activity
pdb|1AJC|B Chain B, Three-Dimensional Structure Of The D153g Mutant Of E. Coli
Alkaline Phosphatase: A Mutant With Weaker Magnesium
Binding And Increased Catalytic Activity
pdb|1AJB|A Chain A, Three-Dimensional Structure Of The D153g Mutant Of E. Coli
Alkaline Phosphatase: A Mutant With Weaker Magnesium
Binding And Increased Catalytic Activity
pdb|1AJB|B Chain B, Three-Dimensional Structure Of The D153g Mutant Of E. Coli
Alkaline Phosphatase: A Mutant With Weaker Magnesium
Binding And Increased Catalytic Activity
pdb|1AJA|A Chain A, Three-Dimensional Structure Of The D153g Mutant Of E. Coli
Alkaline Phosphatase: A Mutant With Weaker Magnesium
Binding And Increased Catalytic Activity
pdb|1AJA|B Chain B, Three-Dimensional Structure Of The D153g Mutant Of E. Coli
Alkaline Phosphatase: A Mutant With Weaker Magnesium
Binding And Increased Catalytic Activity
Length = 449
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 305 EKPKWNVVM-IGDGMNETIVSGHRNFIDGTPTF 336
+KP N+++ IGDGM ++ ++ RN+ +G F
Sbjct: 39 DKPAKNIILLIGDGMGDSEITAARNYAEGAGGF 71
>pdb|3DPC|A Chain A, Structure Of E.Coli Alkaline Phosphatase Mutant In Complex
With A Phosphorylated Peptide
pdb|3DPC|B Chain B, Structure Of E.Coli Alkaline Phosphatase Mutant In Complex
With A Phosphorylated Peptide
Length = 455
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 305 EKPKWNVVM-IGDGMNETIVSGHRNFIDGTPTF 336
+KP N+++ IGDGM ++ ++ RN+ +G F
Sbjct: 39 DKPAKNIILLIGDGMGDSEITAARNYAEGAGGF 71
>pdb|3BDH|A Chain A, Crystal Structure Of Zinc-Deficient Wild-Type E. Coli
Alkaline Phosphatase
pdb|3BDH|B Chain B, Crystal Structure Of Zinc-Deficient Wild-Type E. Coli
Alkaline Phosphatase
Length = 458
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 305 EKPKWNVVM-IGDGMNETIVSGHRNFIDGTPTF 336
+KP N+++ IGDGM ++ ++ RN+ +G F
Sbjct: 40 DKPAKNIILLIGDGMGDSEITAARNYAEGAGGF 72
>pdb|2G9Y|A Chain A, Structure Of S102t E. Coli Alkaline Phosphatase In
Presence Of Phosphate At 2.00 A Resolution
pdb|2G9Y|B Chain B, Structure Of S102t E. Coli Alkaline Phosphatase In
Presence Of Phosphate At 2.00 A Resolution
Length = 449
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 305 EKPKWNVVM-IGDGMNETIVSGHRNFIDGTPTF 336
+KP N+++ IGDGM ++ ++ RN+ +G F
Sbjct: 39 DKPAKNIILLIGDGMGDSEITAARNYAEGAGGF 71
>pdb|1ELZ|A Chain A, E. Coli Alkaline Phosphatase Mutant (S102g)
pdb|1ELZ|B Chain B, E. Coli Alkaline Phosphatase Mutant (S102g)
Length = 449
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 305 EKPKWNVVM-IGDGMNETIVSGHRNFIDGTPTF 336
+KP N+++ IGDGM ++ ++ RN+ +G F
Sbjct: 39 DKPAKNIILLIGDGMGDSEITAARNYAEGAGGF 71
>pdb|1KH4|A Chain A, E. Coli Alkaline Phosphatase Mutant (D330n) In Complex
With Phosphate
pdb|1KH4|B Chain B, E. Coli Alkaline Phosphatase Mutant (D330n) In Complex
With Phosphate
pdb|1KH5|A Chain A, E. Coli Alkaline Phosphatase Mutant (D330n) Mimic Of The
Transition States With Aluminium Fluoride
pdb|1KH5|B Chain B, E. Coli Alkaline Phosphatase Mutant (D330n) Mimic Of The
Transition States With Aluminium Fluoride
pdb|1KH9|A Chain A, E. Coli Alkaline Phosphatase Mutant (D153gd330n) Complex
With Phosphate
pdb|1KH9|B Chain B, E. Coli Alkaline Phosphatase Mutant (D153gd330n) Complex
With Phosphate
Length = 449
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 305 EKPKWNVVM-IGDGMNETIVSGHRNFIDGTPTF 336
+KP N+++ IGDGM ++ ++ RN+ +G F
Sbjct: 39 DKPAKNIILLIGDGMGDSEITAARNYAEGAGGF 71
>pdb|1ALK|A Chain A, Reaction Mechanism Of Alkaline Phosphatase Based On
Crystal Structures. Two Metal Ion Catalysis
pdb|1ALK|B Chain B, Reaction Mechanism Of Alkaline Phosphatase Based On
Crystal Structures. Two Metal Ion Catalysis
Length = 449
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 305 EKPKWNVVM-IGDGMNETIVSGHRNFIDGTPTF 336
+KP N+++ IGDGM ++ ++ RN+ +G F
Sbjct: 39 DKPAKNIILLIGDGMGDSEITAARNYAEGAGGF 71
>pdb|1ELX|A Chain A, E. Coli Alkaline Phosphatase Mutant (S102a)
pdb|1ELX|B Chain B, E. Coli Alkaline Phosphatase Mutant (S102a)
Length = 449
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 305 EKPKWNVVM-IGDGMNETIVSGHRNFIDGTPTF 336
+KP N+++ IGDGM ++ ++ RN+ +G F
Sbjct: 39 DKPAKNIILLIGDGMGDSEITAARNYAEGAGGF 71
>pdb|1KHJ|A Chain A, E. Coli Alkaline Phosphatase Mutant (D153hd330n) Mimic Of
The Transition States With Aluminium Fluoride
pdb|1KHJ|B Chain B, E. Coli Alkaline Phosphatase Mutant (D153hd330n) Mimic Of
The Transition States With Aluminium Fluoride
pdb|1KHK|A Chain A, E. Coli Alkaline Phosphatase Mutant (D153hd330n)
pdb|1KHK|B Chain B, E. Coli Alkaline Phosphatase Mutant (D153hd330n)
pdb|1KHL|A Chain A, E. Coli Alkaline Phosphatase Mutant (D153hd330n) Complex
With Phosphate
pdb|1KHL|B Chain B, E. Coli Alkaline Phosphatase Mutant (D153hd330n) Complex
With Phosphate
pdb|1KHN|A Chain A, E. Coli Alkaline Phosphatase Mutant (D153hd330n) Zinc Form
pdb|1KHN|B Chain B, E. Coli Alkaline Phosphatase Mutant (D153hd330n) Zinc Form
Length = 449
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 305 EKPKWNVVM-IGDGMNETIVSGHRNFIDGTPTF 336
+KP N+++ IGDGM ++ ++ RN+ +G F
Sbjct: 39 DKPAKNIILLIGDGMGDSEITAARNYAEGAGGF 71
>pdb|1KH7|A Chain A, E. Coli Alkaline Phosphatase Mutant (D153gd330n)
pdb|1KH7|B Chain B, E. Coli Alkaline Phosphatase Mutant (D153gd330n)
Length = 449
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 305 EKPKWNVVM-IGDGMNETIVSGHRNFIDGTPTF 336
+KP N+++ IGDGM ++ ++ RN+ +G F
Sbjct: 39 DKPAKNIILLIGDGMGDSEITAARNYAEGAGGF 71
>pdb|1Y7A|A Chain A, Structure Of D153hK328W E. COLI ALKALINE PHOSPHATASE IN
Presence Of Cobalt At 1.77 A Resolution
pdb|1Y7A|B Chain B, Structure Of D153hK328W E. COLI ALKALINE PHOSPHATASE IN
Presence Of Cobalt At 1.77 A Resolution
Length = 449
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 305 EKPKWNVVM-IGDGMNETIVSGHRNFIDGTPTF 336
+KP N+++ IGDGM ++ ++ RN+ +G F
Sbjct: 39 DKPAKNIILLIGDGMGDSEITAARNYAEGAGGF 71
>pdb|1DLJ|A Chain A, The First Structure Of Udp-Glucose Dehydrogenase (Udpgdh)
Reveals The Catalytic Residues Necessary For The
Two-Fold Oxidation
Length = 402
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 228 LRRLLGEPPHEWLRPEDRKLLQSPAENWKKNANAVV 263
++ ++ EP L ED+ +L + EN+KK AN +V
Sbjct: 343 IKIIIYEPMLNKLESEDQSVLVNDLENFKKQANIIV 378
>pdb|1DLI|A Chain A, The First Structure Of Udp-Glucose Dehydrogenase (Udpgdh)
Reveals The Catalytic Residues Necessary For The
Two-Fold Oxidation
Length = 402
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 228 LRRLLGEPPHEWLRPEDRKLLQSPAENWKKNANAVV 263
++ ++ EP L ED+ +L + EN+KK AN +V
Sbjct: 343 IKIIIYEPMLNKLESEDQSVLVNDLENFKKQANIIV 378
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,737,352
Number of Sequences: 62578
Number of extensions: 556570
Number of successful extensions: 1465
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1449
Number of HSP's gapped (non-prelim): 34
length of query: 566
length of database: 14,973,337
effective HSP length: 104
effective length of query: 462
effective length of database: 8,465,225
effective search space: 3910933950
effective search space used: 3910933950
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)