BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>036230
MEGQGSSEMQFTEIETNAGSLDSSVIFHVINDVAGFVLYMHQQIPSILQDISLEFDALQT
EFKELDMDLRPTSRRMNLSRKREIKQGIRRLEKLMNTISSLQTALRLLISEIPNIQEVIF
VLGASPLRPQHIYQLYFSHGKSVSRGEPDFTKGKAAEGLSRKAIRTLISKGAGSDSYPGP
TKLFLLVKASSSLSMPLHFLPKRDFRYSKKIVPFRLRFKCKMQDKAMDDYASQACSPNLR
DYTSDDLIWFQCRHIIKGIAFKTPAEE

High Scoring Gene Products

Symbol, full name Information P value
AT1G03180 protein from Arabidopsis thaliana 5.7e-75

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  036230
        (267 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2014550 - symbol:AT1G03180 "AT1G03180" species...   756  5.7e-75   1


>TAIR|locus:2014550 [details] [associations]
            symbol:AT1G03180 "AT1G03180" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0005739 "mitochondrion" evidence=ISM]
            [GO:0008150 "biological_process" evidence=ND] EMBL:CP002684
            EMBL:AY800558 EMBL:AY924649 IPI:IPI00534927 RefSeq:NP_171817.2
            UniGene:At.51157 ProteinModelPortal:Q5Q0J3
            EnsemblPlants:AT1G03180.1 GeneID:839560 KEGG:ath:AT1G03180
            TAIR:At1g03180 InParanoid:Q5Q0J3 OMA:CKHTIRG PhylomeDB:Q5Q0J3
            ProtClustDB:CLSN2681380 Genevestigator:Q5Q0J3 Uniprot:Q5Q0J3
        Length = 265

 Score = 756 (271.2 bits), Expect = 5.7e-75, P = 5.7e-75
 Identities = 153/273 (56%), Positives = 199/273 (72%)

Query:     2 EGQGSSEMQF-TEIETNAGSLDSSVIFHVINDVAGFVLYMHQQIPSILQDISLEFDALQT 60
             EG+G++E  +  +I T A SL  S +FH+IND+ GFVLYMHQQIPS+LQD+SLEF+ LQT
Sbjct:     5 EGEGTTEENYDVDIATTASSLGGSGVFHIINDIVGFVLYMHQQIPSVLQDMSLEFEGLQT 64

Query:    61 EFKELDMDL-----RPTSRRMNLSRKREIKQGIRRLEKLMNTISSLQTALRLLISEIPNI 115
             EF +L+ +L     +P  RR  +SRKRE+K  I++LEKLM TISSL++AL+L+I E P I
Sbjct:    65 EFMDLETNLAEPQVKPLVRRKLMSRKREVKNEIKKLEKLMKTISSLRSALQLMIREAPGI 124

Query:   116 QEVIFVLGASPLRPQHIYQLYFSHGKSVSRG-EPDFTKGKAAEGLSRKAIRTLISKGAGS 174
             Q+V+ +LG SPLRPQ+ Y+L F+  +    G E DF K KAAE LS+K IR LIS GAGS
Sbjct:   125 QKVVLILGGSPLRPQNAYELLFTQRRDHVLGYEGDFAKSKAAEALSKKTIRALISTGAGS 184

Query:   175 DSYPGPTKLFLLVKASSSLSMPLHFLPKRDFRYSKKIVPFRLRFKCKMQDKAMDDYASQA 234
              SYPGP +LF+LV A  +L++P HFLPKRDFRY++K VP +LRFKC+ QD A +      
Sbjct:   185 TSYPGPMRLFILVHAPPTLNLPQHFLPKRDFRYNRKFVPSKLRFKCRTQDNATN------ 238

Query:   235 CSPNLRDYTSDDLIWFQCRHIIKGIAFKTPAEE 267
              SP      ++DLIW+QCRH+IKG+AF  P EE
Sbjct:   239 -SP-----PTNDLIWYQCRHVIKGLAFHQPVEE 265


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.136   0.387    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      267       267   0.00095  114 3  11 22  0.45    33
                                                     32  0.39    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  601 (64 KB)
  Total size of DFA:  175 KB (2102 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.86u 0.22s 24.08t   Elapsed:  00:00:01
  Total cpu time:  23.86u 0.22s 24.08t   Elapsed:  00:00:01
  Start:  Sat May 11 06:18:45 2013   End:  Sat May 11 06:18:46 2013

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