BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036230
(267 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q10411|SPO15_SCHPO Sporulation-specific protein 15 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=spo15 PE=1 SV=1
Length = 1957
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 56/127 (44%), Gaps = 18/127 (14%)
Query: 9 MQFTEIETNAGSLDSSVIFHVINDVAGFVLYMHQQIPSILQDISLEFDALQTE------- 61
MQ E E N SLD+S F +N+ + HQ I L+D S + LQ E
Sbjct: 595 MQLKENEQNFSSLDTS--FKKLNESHQELENNHQTITKQLKDTSSKLQQLQLERANFEQK 652
Query: 62 ---FKELDMDLRPTSRRMNLSRKREIK--QGIRRLEKLMNTISS----LQTALRLLISEI 112
+ + DLR ++ S K IK + + LEK + T+ + ALR E
Sbjct: 653 ESTLSDENNDLRTKLLKLEESNKSLIKKQEDVDSLEKNIQTLKEDLRKSEEALRFSKLEA 712
Query: 113 PNIQEVI 119
N++EVI
Sbjct: 713 KNLREVI 719
>sp|Q8TBY8|PMFBP_HUMAN Polyamine-modulated factor 1-binding protein 1 OS=Homo sapiens
GN=PMFBP1 PE=2 SV=1
Length = 1022
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 19/169 (11%)
Query: 54 EFDALQTEFKELDMDLRPTSRRM---NLSRKREIKQGIRRLEKLMNTISSLQTALRLLIS 110
E +AL+ EFK+ D L+ SR++ N + + E++ +LE +N ++ Q ++ L
Sbjct: 641 ELEALRQEFKKKDKTLKENSRKLEEENENLRAELQCCSTQLESSLNKYNTSQQVIQDLNK 700
Query: 111 EIPNIQEVIFVLGASPLRPQHIYQLYFSHGKSVSRGEPDFTKGKAAEGLSRKAIRTLISK 170
EI +E + L A QL + K + TK +A + LSRK S
Sbjct: 701 EIALQKESLMSLQA---------QLDKALQKEKHYLQTTITK-EAYDALSRK------SA 744
Query: 171 GAGSDSYPGPTKLFLLVKASSSLSMPLHFLPKRDFRYSKKIVPFRLRFK 219
D KL + + SL L ++ + ++I+ + R K
Sbjct: 745 ACQDDLTQALEKLNHVTSETKSLQQSLTQTQEKKAQLEEEIIAYEERMK 793
>sp|Q86YB8|ERO1B_HUMAN ERO1-like protein beta OS=Homo sapiens GN=ERO1LB PE=1 SV=2
Length = 467
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 47/118 (39%), Gaps = 24/118 (20%)
Query: 113 PNIQEV------IFVLGASPLRPQHIYQLYFSHGKSVSRGEPDFTKGKAAEGLSRKAIRT 166
PNI+E + G P R +++Y LY +++S+ P F R+
Sbjct: 278 PNIKEFKHRFDPVETKGEGPRRLKNLYFLYLIELRALSKVAPYFE-------------RS 324
Query: 167 LISKGAGSDSYPGPTKLFLLVKASSSLSMPLHFLPKRDFRYSKKIV-----PFRLRFK 219
++ G+ TK LL + S P+HF K F KK FRL FK
Sbjct: 325 IVDLYTGNAEEDADTKTLLLNIFQDTKSFPMHFDEKSMFAGDKKGAKSLKEEFRLHFK 382
>sp|P0A3U1|LTRA_LACLM Group II intron-encoded protein LtrA OS=Lactococcus lactis subsp.
cremoris (strain MG1363) GN=ltrA PE=1 SV=1
Length = 599
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 7/87 (8%)
Query: 114 NIQEVIFVLGASPLRPQHIYQLY---FSHGKSVSRGEPDFTKGKAAEGLSRKAIRTLISK 170
NI EV L LRP Y Y +S+ + ++G D T A+G S + I+ +I
Sbjct: 18 NIDEVFTRLYRYLLRPDIYYVAYQNLYSNKGASTKGILDDT----ADGFSEEKIKKIIQS 73
Query: 171 GAGSDSYPGPTKLFLLVKASSSLSMPL 197
YP P + + K +S PL
Sbjct: 74 LKDGTYYPQPVRRMYIAKKNSKKMRPL 100
>sp|P0A3U0|LTRA_LACLC Group II intron-encoded protein LtrA OS=Lactococcus lactis subsp.
cremoris GN=ltrA PE=1 SV=1
Length = 599
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 7/87 (8%)
Query: 114 NIQEVIFVLGASPLRPQHIYQLY---FSHGKSVSRGEPDFTKGKAAEGLSRKAIRTLISK 170
NI EV L LRP Y Y +S+ + ++G D T A+G S + I+ +I
Sbjct: 18 NIDEVFTRLYRYLLRPDIYYVAYQNLYSNKGASTKGILDDT----ADGFSEEKIKKIIQS 73
Query: 171 GAGSDSYPGPTKLFLLVKASSSLSMPL 197
YP P + + K +S PL
Sbjct: 74 LKDGTYYPQPVRRMYIAKKNSKKMRPL 100
>sp|Q8R2E9|ERO1B_MOUSE ERO1-like protein beta OS=Mus musculus GN=Ero1lb PE=2 SV=1
Length = 467
Score = 32.0 bits (71), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 47/118 (39%), Gaps = 24/118 (20%)
Query: 113 PNIQEV------IFVLGASPLRPQHIYQLYFSHGKSVSRGEPDFTKGKAAEGLSRKAIRT 166
PNI+E + G P R +++Y LY +++S+ P F R+
Sbjct: 278 PNIKEFRRRFDPVETKGEGPRRLKNLYFLYLIELRALSKVAPYFE-------------RS 324
Query: 167 LISKGAGSDSYPGPTKLFLLVKASSSLSMPLHFLPKRDFRYSKKIV-----PFRLRFK 219
++ G+ TK LL + S P+HF K F KK FRL FK
Sbjct: 325 IVDLYTGNVEDDADTKTLLLSIFQDTKSFPMHFDEKSMFAGDKKGAKSLKEEFRLHFK 382
>sp|Q5UQB5|TOP1P_MIMIV DNA topoisomerase 1 type prokaryotic OS=Acanthamoeba polyphaga
mimivirus GN=TOP1P PE=1 SV=1
Length = 854
Score = 31.2 bits (69), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 48/95 (50%), Gaps = 7/95 (7%)
Query: 43 QIPSILQDISLEFDALQTEFKELDMDLRPTSRRMNLSRKREIKQ-GIRRLEKLMNTISSL 101
+IP++ +++E + E+ +RP R S +++++ GI R +NTI ++
Sbjct: 449 KIPTVGSKVTMEEIIARQEY------MRPPPRYSEASLVKKLEELGIGRPSTYVNTIKTI 502
Query: 102 QTALRLLISEIPNIQEVIFVLGASPLRPQHIYQLY 136
+ I+++P I++ I + +HI ++Y
Sbjct: 503 INREYVKITDVPGIKKDITIYSIKSENKKHIMEVY 537
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,268,962
Number of Sequences: 539616
Number of extensions: 3547268
Number of successful extensions: 8805
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 8798
Number of HSP's gapped (non-prelim): 27
length of query: 267
length of database: 191,569,459
effective HSP length: 115
effective length of query: 152
effective length of database: 129,513,619
effective search space: 19686070088
effective search space used: 19686070088
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)