Query 036232
Match_columns 259
No_of_seqs 150 out of 1216
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 18:27:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036232.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036232hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_A 60S ribosomal protein L 100.0 8E-61 2.8E-65 417.9 -6.0 216 44-259 1-216 (216)
2 1i2a_A 50S ribosomal protein L 100.0 7.9E-56 2.7E-60 387.0 21.2 211 47-259 1-212 (219)
3 3o58_A L10A, 60S ribosomal pro 100.0 9.8E-61 3.4E-65 417.7 -13.9 216 44-259 1-217 (217)
4 3j21_A 50S ribosomal protein L 100.0 2.3E-57 7.8E-62 396.0 6.8 211 47-259 3-215 (216)
5 1mzp_A 50S ribosomal protein L 100.0 3.6E-55 1.2E-59 382.3 20.0 212 46-258 2-215 (217)
6 2zkr_5 60S ribosomal protein L 100.0 1.9E-55 6.6E-60 382.8 16.1 210 47-258 1-211 (212)
7 3qoy_A 50S ribosomal protein L 100.0 6.7E-50 2.3E-54 353.2 17.6 204 48-259 19-229 (242)
8 2wwq_5 50S ribosomal protein L 100.0 4.4E-49 1.5E-53 347.0 20.8 201 47-258 18-224 (234)
9 3bbo_D Ribosomal protein L1; l 100.0 2.2E-48 7.5E-53 356.0 10.9 202 47-259 132-339 (352)
10 3u42_A 50S ribosomal protein L 100.0 2.2E-46 7.6E-51 328.6 17.6 196 50-258 21-225 (229)
11 2ftc_A Mitochondrial ribosomal 100.0 2.8E-41 9.6E-46 288.9 20.1 175 73-258 2-183 (189)
12 2ov7_A 50S ribosomal protein L 99.9 8.5E-26 2.9E-30 183.0 14.1 116 45-258 12-133 (137)
13 3u42_A 50S ribosomal protein L 67.2 1.2 4.2E-05 38.3 0.2 10 71-80 56-65 (229)
14 3aon_B V-type sodium ATPase su 58.6 6.8 0.00023 29.9 3.0 95 105-206 3-111 (115)
15 3qoy_A 50S ribosomal protein L 57.9 3 0.0001 36.1 1.0 22 159-180 128-150 (242)
16 2wwq_5 50S ribosomal protein L 52.0 5.2 0.00018 34.4 1.5 21 159-179 124-145 (234)
17 3bbo_D Ribosomal protein L1; l 45.4 11 0.00038 34.3 2.7 20 159-178 238-258 (352)
18 3j21_A 50S ribosomal protein L 40.1 13 0.00045 31.3 2.2 21 159-179 117-139 (216)
19 2qai_A V-type ATP synthase sub 39.3 61 0.0021 24.3 5.6 77 106-196 2-99 (111)
20 2d00_A V-type ATP synthase sub 38.3 41 0.0014 25.1 4.5 73 104-181 3-78 (109)
21 2i4r_A V-type ATP synthase sub 35.6 31 0.0011 25.6 3.4 72 106-182 11-86 (102)
22 3nbm_A PTS system, lactose-spe 27.2 56 0.0019 24.3 3.6 52 102-163 4-68 (108)
23 1xi3_A Thiamine phosphate pyro 23.2 60 0.002 26.0 3.4 25 104-128 14-44 (215)
24 2ov6_A V-type ATP synthase sub 22.7 1.3E+02 0.0045 21.8 4.9 71 106-181 2-76 (101)
25 2k6g_A Replication factor C su 21.1 86 0.003 23.3 3.6 21 116-136 85-105 (109)
No 1
>3iz5_A 60S ribosomal protein L1 (L1P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_A
Probab=100.00 E-value=8e-61 Score=417.95 Aligned_cols=216 Identities=81% Similarity=1.227 Sum_probs=208.9
Q ss_pred cCCCCHHHHHHHHHHHHhhhhhccCCCCCeEEEEEEEcccCCCCCCccceeEecCCCCCCCcEEEEEeCcccHHHHHHcC
Q 036232 44 NSKLSSEVLREAVSTICGDAKEKNRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPMMKVCMLGDAQHVEQAEKIG 123 (259)
Q Consensus 44 ~s~v~~~~v~kAv~~L~~~~~~~~~~f~e~I~l~i~lK~i~~kk~~~~r~~I~LPh~~~~~~~Vcvf~~~~~~~~a~~~g 123 (259)
||+++++++.+||+.++++.++++++|+|+|+|+|+||++||++++++||.|.|||+++++.+||||++++++++|+++|
T Consensus 1 ~~k~~~~~l~eav~~~~~~~~~~~~kF~etvel~i~Lk~idp~kd~~~rg~v~LPh~~~k~~kV~Vf~~~~~~~~A~~aG 80 (216)
T 3iz5_A 1 MSKLQSDAVKDAITQIVGEAREKKRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMRVCMLGDAQHVDQAEKMG 80 (216)
T ss_dssp CTGGGSCSSCEECTTTSSSSTTHHHHCCCSSCCEEEEEEECCCCSSSTTCCEECCBCSSCCCCCCCEEEECCTHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhccccccCCCccEEEEEEecccCcccccccceeecCCCCCCCCcEEEEEcChHhHHHHHhcc
Confidence 68899999999999999977555679999999999999999999999999999999999999999999999999999999
Q ss_pred CceeCHHHHHHhhhcHHHHHHHhhhcCEEEEeHhhHhhhhhccCCCCCCCCCCCccccCcccHHHHHHHhhcceeeEecc
Q 036232 124 MDYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLEAKVNETKAVVKFQLKK 203 (259)
Q Consensus 124 a~~vg~~eL~k~~k~~e~~rkL~~~yD~fLad~~i~~~L~rlLGk~f~~~~K~P~~v~~~~dl~~~I~~~~~s~~~~~~~ 203 (259)
|++||+++|++.+++++.+|+|+.+||+||||++||+.||++|||+|||++|+|+|+++++|+.++|+++++++.|++++
T Consensus 81 a~~vg~~~L~~~~k~~~~~rkl~~~fD~~lA~~~i~~~l~riLG~~l~p~gk~P~p~~~t~dv~~~v~~~k~~v~~r~~k 160 (216)
T 3iz5_A 81 LDYMDVESLKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPRLLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKK 160 (216)
T ss_dssp HTCSEEECGGGHHHHHHTCCCCSEEEECTTTHHHHHHHHHHHHTTTCSCCTTTTCBCSCHHHHHHHHHHTBCCEEECTTS
T ss_pred CCEeCHHHHHHHhhchHHHHHHHhhCCEEEECHHHHHHHHHHhcccccccCCcCCCcCCcccHHHHHHHHHhhhheeCCC
Confidence 99999999999999999889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEEecCCCChhHHhccHHHHHHHHHHhccccccCeeEEEEEcCCCCCeecC
Q 036232 204 VLCMGVAVGNCSMEEKQVFQNVQLSVNFLVSLLKKSWQNVRCLHLKSTMGRPQRIY 259 (259)
Q Consensus 204 ~~~i~v~IG~~sm~~eql~eNi~avl~~l~~~~p~~~~nI~sv~Lkst~sp~lpIy 259 (259)
++|++++||+++|++|||+|||.+++++|.+.+|++|.||+++||||||||++|||
T Consensus 161 ~~~i~v~IG~~~~~~e~L~eNi~avi~~l~~~~p~~~~~Iksv~iksTmgp~i~iy 216 (216)
T 3iz5_A 161 VLCMGVAVGNLSMDEKQIQQNIQMSVNFLVSLLKKNWQNVRCLYVKSTMGKRVRVF 216 (216)
T ss_dssp EEEEEEEETTSCHHHHHHHHHHHHHHHHHHCCSSCCSCSCSEEEECCSSCCCEEEC
T ss_pred ccEEEEecCCCCCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEEECCCCCCEecC
Confidence 99999999999999999999999999999999999999999999999999999999
No 2
>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein, translation repressor, ribosome; 1.85A {Methanocaldococcus jannaschii} SCOP: e.24.1.1 PDB: 1cjs_A 1u63_A 1dwu_A
Probab=100.00 E-value=7.9e-56 Score=387.00 Aligned_cols=211 Identities=28% Similarity=0.409 Sum_probs=199.6
Q ss_pred CCHHHHHHHHHHHHhhhhhccCCCCCeEEEEEEEcccCCCCC-CccceeEecCCCCCCCcEEEEEeCcccHHHHHHcCCc
Q 036232 47 LSSEVLREAVSTICGDAKEKNRNFVETIELQIGLKNYDPQKD-KRFSGSVKLPHIPRPMMKVCMLGDAQHVEQAEKIGMD 125 (259)
Q Consensus 47 v~~~~v~kAv~~L~~~~~~~~~~f~e~I~l~i~lK~i~~kk~-~~~r~~I~LPh~~~~~~~Vcvf~~~~~~~~a~~~ga~ 125 (259)
++++++.+||++|++.. +.++|+|+|+|+|+||+++|+++ +++||.|.|||+++++.+||||++++++++|+++||+
T Consensus 1 ~~~~~l~eAv~~llk~~--~~~kf~etVel~i~LK~~dp~~d~q~vrg~v~LPh~~~k~~~V~Vf~~~~~~~~A~~aGa~ 78 (219)
T 1i2a_A 1 MDREALLQAVKEARELA--KPRNFTQSFEFIATLKEIDMRKPENRIKTEVVLPHGRGKEAKIAVIGTGDLAKQAEELGLT 78 (219)
T ss_dssp CCHHHHHHHHHHHHHHS--CCCSSCCEEEEEEEESSCCTTSGGGCCEEEEECTTCCSSCCCEEEECCHHHHHHHHHTTCE
T ss_pred CCHHHHHHHHHHHHHhc--ccCCCCceEEEEEEecccCCcccccccceEEecCCCCCCCcEEEEEcCchhHHHHHHCCCC
Confidence 45889999999777754 46789999999999999999987 7999999999999999999999999999999999999
Q ss_pred eeCHHHHHHhhhcHHHHHHHhhhcCEEEEeHhhHhhhhhccCCCCCCCCCCCccccCcccHHHHHHHhhcceeeEecccc
Q 036232 126 YMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLEAKVNETKAVVKFQLKKVL 205 (259)
Q Consensus 126 ~vg~~eL~k~~k~~e~~rkL~~~yD~fLad~~i~~~L~rlLGk~f~~~~K~P~~v~~~~dl~~~I~~~~~s~~~~~~~~~ 205 (259)
+||+++|.+..++++++|+++.+||+||||++||+.||++||+.|+|++|+|+|+..++|+.++|+++++++.|++++++
T Consensus 79 ~vg~~~L~ki~~~kk~~r~l~~~fD~~lA~~~~m~~l~k~LGk~LgprgkmP~pk~gt~dv~~~v~~~k~~v~~r~~k~~ 158 (219)
T 1i2a_A 79 VIRKEEIEELGKNKRKLRKIAKAHDFFIAQADLMPLIGRYMGVILGPRGKMPKPVPANANIKPLVERLKKTVVINTRDKP 158 (219)
T ss_dssp EECHHHHHHHHHCHHHHHHHHHHCSEEEEEGGGHHHHHHHTHHHHGGGTCCCEEECTTCCCHHHHHHHHTEEEEECTTSS
T ss_pred EEcHHHHHHHHhhhhhhhhchhhCCEEEECHHHHHHHHHHHhhhhcccCCCCcccCCCccHHHHHHHHhcceEEEecCCC
Confidence 99999995555678888999999999999999999999999999999999999999889999999999999999999999
Q ss_pred EEEEEEecCCCChhHHhccHHHHHHHHHHhccccccCeeEEEEEcCCCCCeecC
Q 036232 206 CMGVAVGNCSMEEKQVFQNVQLSVNFLVSLLKKSWQNVRCLHLKSTMGRPQRIY 259 (259)
Q Consensus 206 ~i~v~IG~~sm~~eql~eNi~avl~~l~~~~p~~~~nI~sv~Lkst~sp~lpIy 259 (259)
|++++||+++|++|||+|||.+++++|.+.+|++|.||+++||||||||++|||
T Consensus 159 ~i~v~VG~~~~~~e~L~eNi~a~i~~l~~~~p~~~~~ik~v~lksTmgp~i~iy 212 (219)
T 1i2a_A 159 YFQVLVGNEKMTDEQIVDNIEAVLNVVAKKYEKGLYHIKDAYVKLTMGPAVKVK 212 (219)
T ss_dssp EEEEEEEETTSCHHHHHHHHHHHHHHHHHHSTTGGGGEEEEEEEETTSCCEECC
T ss_pred EEEEEEecCCCCHHHHHHHHHHHHHHHHHhCCccccceEEEEEECCCCCCEEeE
Confidence 999999999999999999999999999999999999999999999999999998
No 3
>3o58_A L10A, 60S ribosomal protein L1; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3izc_A 1s1i_A 3izs_A 3o5h_A 2noq_G 3j0l_B 3j0o_B 3j0p_B 3j0q_B 3jyw_A
Probab=100.00 E-value=9.8e-61 Score=417.67 Aligned_cols=216 Identities=59% Similarity=0.958 Sum_probs=205.7
Q ss_pred cCCCCHHHHHHHHHHHHhhhh-hccCCCCCeEEEEEEEcccCCCCCCccceeEecCCCCCCCcEEEEEeCcccHHHHHHc
Q 036232 44 NSKLSSEVLREAVSTICGDAK-EKNRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPMMKVCMLGDAQHVEQAEKI 122 (259)
Q Consensus 44 ~s~v~~~~v~kAv~~L~~~~~-~~~~~f~e~I~l~i~lK~i~~kk~~~~r~~I~LPh~~~~~~~Vcvf~~~~~~~~a~~~ 122 (259)
||+++++++++||++++++++ .++++|+|+|+|+|+||++||++++++||.|.|||+++++.+||||++++++++|+++
T Consensus 1 ~sk~~~~~~~~av~~~l~~~~~~~~~kf~etVel~i~Lk~idp~kd~~~rg~v~LPh~~~k~~~V~Vf~~~~~~~~Ak~a 80 (217)
T 3o58_A 1 MSKITSSQVREHVKELLKYSNETKKRNFLETVELQVGLKNYDPQRDKRFSGSLKLPNCPRPNMSICIFGDAFDVDRAKSC 80 (217)
T ss_dssp ---CCSTTHHHHTTSSSSCCSSSSCCSSCCCCCCCCCSCCSCSSSSSCCSCCCSCCCCCSSCCCCCCCSSTTSSGGGTTT
T ss_pred CCccCHHHHHHHHHHHHHhcccccccCCCccEEEEEEecccCCCCCCcCCeEEECCCCCCCCcEEEEEcCcHhHHHHHHc
Confidence 789999999999999999764 2567899999999999999999999999999999999999999999999999999999
Q ss_pred CCceeCHHHHHHhhhcHHHHHHHhhhcCEEEEeHhhHhhhhhccCCCCCCCCCCCccccCcccHHHHHHHhhcceeeEec
Q 036232 123 GMDYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLEAKVNETKAVVKFQLK 202 (259)
Q Consensus 123 ga~~vg~~eL~k~~k~~e~~rkL~~~yD~fLad~~i~~~L~rlLGk~f~~~~K~P~~v~~~~dl~~~I~~~~~s~~~~~~ 202 (259)
||++||+++|++.++++|.+|+|+.+||+||||++||+.||++|||+|||++|+|+|+.++.|+.++|+++++++.|+++
T Consensus 81 Ga~~vg~~~L~~~~k~~k~~~~l~~~fD~~iA~~~im~~l~riLG~~l~p~gk~P~p~~vt~dv~~~v~~~k~~v~~r~~ 160 (217)
T 3o58_A 81 GVDAMSVDDLKKLNKNKKLIKKLSKKYNAFIASEVLIKQVPRLLGPQLSKAGKFPTPVSHNDDLYGKVTDVRSTIKFQLK 160 (217)
T ss_dssp TCCCCCSTTTTTTSCSSSHHHHHHCSSSCCCCCCCCSSCCSSSSSSTTHHHHCSSCCSCTTTCSSSGGGGTTSCCSCCCC
T ss_pred CCCEeCHHHHHHHhhchhHhhhhhhhCCEEEECHHHHHHHHHHhhhhhcccCCcCCCcCCchhHHHHHHHHhceEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccEEEEEEecCCCChhHHhccHHHHHHHHHHhccccccCeeEEEEEcCCCCCeecC
Q 036232 203 KVLCMGVAVGNCSMEEKQVFQNVQLSVNFLVSLLKKSWQNVRCLHLKSTMGRPQRIY 259 (259)
Q Consensus 203 ~~~~i~v~IG~~sm~~eql~eNi~avl~~l~~~~p~~~~nI~sv~Lkst~sp~lpIy 259 (259)
+++|++++||+++|++|||+|||.+++++|.+.+|++|.||+++||||||||++|||
T Consensus 161 k~~~i~v~IG~~~~~~e~l~eNi~avi~~l~~~~pk~~~~iksi~lksTmgp~i~iy 217 (217)
T 3o58_A 161 KVLCLAVAVGNVEMEEDVLVNQILMSVNFFVSLLKKNWQNVGSLVVKSSMGPAFRLY 217 (217)
T ss_dssp SSSCCCCCCCSSSCCSHHHHHHHHHTCSTTTCCSSSCSCCCSCCCCCSSSSCSCCC-
T ss_pred CCCEEEEeeccCCCCHHHHHHHHHHHHHHHHHhcccCCceEEEEEEECCCCCCEecC
Confidence 999999999999999999999999999999999999999999999999999999999
No 4
>3j21_A 50S ribosomal protein L1P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=2.3e-57 Score=395.97 Aligned_cols=211 Identities=28% Similarity=0.470 Sum_probs=202.2
Q ss_pred CCHHHHHHHHHHHHhhhhhccCCCCCeEEEEEEEcccCCCC-CCccceeEecCCCCCCCcEEEEEeCcccHHHHHHcCCc
Q 036232 47 LSSEVLREAVSTICGDAKEKNRNFVETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPMMKVCMLGDAQHVEQAEKIGMD 125 (259)
Q Consensus 47 v~~~~v~kAv~~L~~~~~~~~~~f~e~I~l~i~lK~i~~kk-~~~~r~~I~LPh~~~~~~~Vcvf~~~~~~~~a~~~ga~ 125 (259)
++++++.+||+.+++.. ++++|+|+|+|+|+|+++||++ ++++||.|.|||+++++.+||||++++++++|+++||+
T Consensus 3 ~~~~~~~eav~~~~~~~--~~~kF~etvel~i~L~~~dp~k~d~~~rg~v~LPh~~~k~~kV~Vf~~~~~~~~Ak~aGad 80 (216)
T 3j21_A 3 FDRQKIVKAVKEAKARA--KPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIADGAVAEAARKLGLD 80 (216)
T ss_dssp SSCSSCCCCTTTTCCCC--CCSSSCCEEEEEEEESSCCSSSGGGSCCEEEECSSCCSSCCCEEECCCSHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhC--cccCCCceEEEEEEECCCCCCCcCceeeEEEeCCCCCCCCcEEEEECCHHHHHHHHhcCCC
Confidence 56778899999999854 4579999999999998899998 99999999999999999999999999999999999999
Q ss_pred eeCHHHHHHhhhcHHHHHHHhhhcCEEEEeHhhHhhhhhccCCCCCCCCCCCccccCc-ccHHHHHHHhhcceeeEeccc
Q 036232 126 YMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQ-ESLEAKVNETKAVVKFQLKKV 204 (259)
Q Consensus 126 ~vg~~eL~k~~k~~e~~rkL~~~yD~fLad~~i~~~L~rlLGk~f~~~~K~P~~v~~~-~dl~~~I~~~~~s~~~~~~~~ 204 (259)
++|.++|++++++++++|+|+.+||+||||++||+.||++||+.|+|++|+|+|+..+ +|+.++|+++++++.|+++++
T Consensus 81 ~vg~e~L~k~~k~~k~~kkl~~~fD~~lA~~~im~~l~k~LGk~LgprgkmP~pk~gtv~dv~~~v~~~k~~v~~r~~k~ 160 (216)
T 3j21_A 81 VISSAELEEIASSPRQARKLAKKYDFFIAEAPLMPKIGRYLGRYLGPRNKMPVVVPPTLTDLTPIVEKLKKTVRIQLKNN 160 (216)
T ss_dssp CCCTTHHHHHHHCCCSSSCCSSSCSEEEBCGGGHHHHHHHHHHHHTTSSSSCCTTTTCBCSHHHHHHHHTCEEEEEEETT
T ss_pred ccCHHHHHHHhcCHHHHhhhhhhCCEEEeCHHHHHHHHHHHHHHhccCCccCCCcCCcHHHHHHHHHHHHhhceeecCCC
Confidence 9999999999999988899999999999999999999999999999999999999988 999999999999999999999
Q ss_pred cEEEEEEecCCCChhHHhccHHHHHHHHHHhccccccCeeEEEEEcCCCCCeecC
Q 036232 205 LCMGVAVGNCSMEEKQVFQNVQLSVNFLVSLLKKSWQNVRCLHLKSTMGRPQRIY 259 (259)
Q Consensus 205 ~~i~v~IG~~sm~~eql~eNi~avl~~l~~~~p~~~~nI~sv~Lkst~sp~lpIy 259 (259)
+|++++||+++|++|||+|||.+++++|.+.+|++|.||+++||||||||+++||
T Consensus 161 ~~i~v~VG~~~~~~e~L~eNi~a~i~~l~~~~p~~~k~Iksi~lksTmgp~i~i~ 215 (216)
T 3j21_A 161 PVVHAPVGTEKMSDEEIAENIEAVLNAIIGKLERGESQVKSVYVKTTMGPAVKIE 215 (216)
T ss_dssp TEEECCCEESSSCHHHHHHHHHHHHHHHHHSCCCSSCSEEEEEEEESSSCCEECC
T ss_pred CEEEEEecCCCCCHHHHHHHHHHHHHHHHHhccccccceEEEEEECCCCCCEEcc
Confidence 9999999999999999999999999999999999999999999999999999998
No 5
>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A {Sulfolobus acidocaldarius} SCOP: e.24.1.1 PDB: 1pnu_5 1pny_5 1vor_7 1vou_7 1vow_7 1voy_7 1vp0_7 3e1b_Z 3e1d_Z
Probab=100.00 E-value=3.6e-55 Score=382.34 Aligned_cols=212 Identities=27% Similarity=0.384 Sum_probs=201.6
Q ss_pred CCCHHHHHHHHHHHHhhhhhccCCCCCeEEEEEEEcccCCCCC-CccceeEecCCCCCCCcEEEEEeCcccHHHHHHcCC
Q 036232 46 KLSSEVLREAVSTICGDAKEKNRNFVETIELQIGLKNYDPQKD-KRFSGSVKLPHIPRPMMKVCMLGDAQHVEQAEKIGM 124 (259)
Q Consensus 46 ~v~~~~v~kAv~~L~~~~~~~~~~f~e~I~l~i~lK~i~~kk~-~~~r~~I~LPh~~~~~~~Vcvf~~~~~~~~a~~~ga 124 (259)
-++++++++||++|+++.+.+.++|+|+|+|+|+||+++|+++ +++||.|.|||+++++.+||||++++++++|+++||
T Consensus 2 ~v~~~~l~~Av~~ll~~~~~~~~kf~etvel~i~LK~~dp~~d~q~~rg~v~LPh~~~k~~~V~Vf~~~~~~~~A~~aGa 81 (217)
T 1mzp_A 2 LADKESLIEALKLALSTEYNVKRNFTQSVEIILTFKGIDMKKGDLKLREIVPLPKQPSKAKRVLVVPSSEQLEYAKKASP 81 (217)
T ss_dssp CCCHHHHHHHHHHHHSTTTCCCCSSCCEEEEEEEESSCCGGGTTTCCEEEEECSSCCSSCCCEEEECCHHHHHHHHHTCC
T ss_pred ccCHHHHHHHHHHHHhhccccccCCCccEEEEEEecCCCCcccccccceeecCCCCCCCCcEEEEEcCchhHHHHHhcCC
Confidence 3789999999999999865567899999999999999999887 799999999999999999999999999999999999
Q ss_pred c-eeCHHHHHHhhhcHHHHHHHhhhcCEEEEeHhhHhhhhhccCCCCCCCCCCCccccCcccHHHHHHHhhcceeeEecc
Q 036232 125 D-YMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLEAKVNETKAVVKFQLKK 203 (259)
Q Consensus 125 ~-~vg~~eL~k~~k~~e~~rkL~~~yD~fLad~~i~~~L~rlLGk~f~~~~K~P~~v~~~~dl~~~I~~~~~s~~~~~~~ 203 (259)
+ ++|+++|.+..++++++|+++.+||+||||++||+.||++||+.|+|++|||+|+..+.|+.++|+++++++.|++++
T Consensus 82 d~~vg~~~L~ki~~~kk~~k~~~~~fD~~lA~~~~m~~l~~~LG~~LgprgkmP~p~~gt~dv~~~v~~~k~~v~~r~~k 161 (217)
T 1mzp_A 82 KVVITREELQKLQGQKRPVKKLARQNEWFLINQESMALAGRILGPALGPRGKFPTPLPNTADISEYINRFKRSVLVKTKD 161 (217)
T ss_dssp SEECCHHHHHHHTTCHHHHHHHHHSCSEEEECGGGHHHHHHHTHHHHGGGTCCEEECCSSSCCHHHHHHHHTEEEEECSS
T ss_pred CeeeCHHHHHHHHhhHHhhhhchhhCCEEEECHHHHHHHHHHHhhhccccCCCCcccCCCccHHHHHHHHhcceEEEecC
Confidence 7 999999955556799999999999999999999999999999999999999999998999999999999999999999
Q ss_pred ccEEEEEEecCCCChhHHhccHHHHHHHHHHhccccccCeeEEEEEcCCCCCeec
Q 036232 204 VLCMGVAVGNCSMEEKQVFQNVQLSVNFLVSLLKKSWQNVRCLHLKSTMGRPQRI 258 (259)
Q Consensus 204 ~~~i~v~IG~~sm~~eql~eNi~avl~~l~~~~p~~~~nI~sv~Lkst~sp~lpI 258 (259)
++|++++||+++|++|||+||+.+++++|.+.+|+ |.||+++||||||||+++|
T Consensus 162 ~~~i~v~VG~~~~~~e~L~eNi~a~i~~l~~~~p~-~~~ik~v~lksTmgp~i~i 215 (217)
T 1mzp_A 162 QPQVQVFIGTEDMKPEDLAENAIAVLNAIENKAKV-ETNLRNIYVKTTMGKAVKV 215 (217)
T ss_dssp SSEEEEEEEETTSCHHHHHHHHHHHHHHHHHHCCC-TTTEEEEEEEETTSCCEEC
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCcc-chheEEEEEECCCCCCeeC
Confidence 99999999999999999999999999999999999 9999999999999999986
No 6
>2zkr_5 60S ribosomal protein L10A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=1.9e-55 Score=382.83 Aligned_cols=210 Identities=24% Similarity=0.389 Sum_probs=197.9
Q ss_pred CCHHHHHHHHHHHHhhhhhccCCCCCeEEEEEEEcccCCCC-CCccceeEecCCCCCCCcEEEEEeCcccHHHHHHcCCc
Q 036232 47 LSSEVLREAVSTICGDAKEKNRNFVETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPMMKVCMLGDAQHVEQAEKIGMD 125 (259)
Q Consensus 47 v~~~~v~kAv~~L~~~~~~~~~~f~e~I~l~i~lK~i~~kk-~~~~r~~I~LPh~~~~~~~Vcvf~~~~~~~~a~~~ga~ 125 (259)
++++++++||++|++.. +.++|+|+|+|+|+||+++|++ ++++||.|.|||+++++.+||||++++++++|+++||+
T Consensus 1 ~~~~~l~eAv~~llk~~--~~~kf~etvel~i~Lk~~dp~k~d~~~rg~v~LPh~~~k~~~V~Vf~~~~~~~~A~~aGa~ 78 (212)
T 2zkr_5 1 MADQEIENAVSRALEDA--PERNFRETVDLAVNLRDLDLNDPSNRVDESVVLPAGTGQETTIVVFAEGETALRAEEVADD 78 (212)
T ss_dssp -CCTTHHHHHHHHHHTS--CCCSSCCEEEEEEEESSCCTTTTTTCCCCEEECSSCCSSCCCEEEECCHHHHHHHHHHTSC
T ss_pred CCHHHHHHHHHHHHHhc--ccCCCCceEEEEEEeCCCCCCcccccCceEEECCCCCCCCcEEEEEcCchhHHHHHhcCCC
Confidence 46788999999776644 4679999999999999999996 99999999999999999999999999999999999999
Q ss_pred eeCHHHHHHhhhcHHHHHHHhhhcCEEEEeHhhHhhhhhccCCCCCCCCCCCccccCcccHHHHHHHhhcceeeEecccc
Q 036232 126 YMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLEAKVNETKAVVKFQLKKVL 205 (259)
Q Consensus 126 ~vg~~eL~k~~k~~e~~rkL~~~yD~fLad~~i~~~L~rlLGk~f~~~~K~P~~v~~~~dl~~~I~~~~~s~~~~~~~~~ 205 (259)
++|+++|.+..++|+++|+++.+||+||||++||+.||++||+.|+|++|+|+|+..+.|+.++|++++++++|++++++
T Consensus 79 ~vg~~~L~ki~~~kk~~k~~~~~fD~~lA~~~~m~~l~~~LGk~LgprgkmP~pk~gt~dv~~~i~~~k~~v~~r~~k~~ 158 (212)
T 2zkr_5 79 VLDEDELEELGGDDDAAKDLADDTDFFIAEKGLMQDIGRYLGTVLGPRGKMPEPLDPDDDVVEVIERMKNTVQLRSGERR 158 (212)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHHCSEEEECTTTHHHHHHHTHHHHHHHTCCEEECCSSSCCHHHHHHHHTEEECCCSSSS
T ss_pred EeCHHHHHHHHhhHHhhhcccccCCEEEECHHHHHHHHHHHhhhccccCCcCcccCCCcCHHHHHHHHHcceEEEecCCC
Confidence 99999994444589999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred EEEEEEecCCCChhHHhccHHHHHHHHHHhccccccCeeEEEEEcCCCCCeec
Q 036232 206 CMGVAVGNCSMEEKQVFQNVQLSVNFLVSLLKKSWQNVRCLHLKSTMGRPQRI 258 (259)
Q Consensus 206 ~i~v~IG~~sm~~eql~eNi~avl~~l~~~~p~~~~nI~sv~Lkst~sp~lpI 258 (259)
|++++||+++|++|||+||+.+++++|.+.+|++|.||+++||||||||+++|
T Consensus 159 ~i~v~VG~~~~~~e~L~eNi~a~i~~l~~~~p~~~~~ik~v~lksTmgp~i~i 211 (212)
T 2zkr_5 159 TFHTRVGAEDMSAENIADNIDVILRRLHADLEKGPLNIDTVYVKTTMGPAMEV 211 (212)
T ss_dssp EEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCCCTTTEEEEEEEESSSCCEEC
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCccccccEEEEEEECCCCCCEEC
Confidence 99999999999999999999999999999999999999999999999999987
No 7
>3qoy_A 50S ribosomal protein L1; beta-alpha-beta, structural constituent of ribosome, rRNA BI regulation of translation, translation, ribosomal RNA; 2.10A {Aquifex aeolicus}
Probab=100.00 E-value=6.7e-50 Score=353.20 Aligned_cols=204 Identities=25% Similarity=0.368 Sum_probs=188.2
Q ss_pred CHHHHHHHHHHHHhhhhhccCCCCCeEEEEEEEcccCCCC-CCccceeEecCCCCCCCcEEEEEeCcccHHHHHHcCCce
Q 036232 48 SSEVLREAVSTICGDAKEKNRNFVETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPMMKVCMLGDAQHVEQAEKIGMDY 126 (259)
Q Consensus 48 ~~~~v~kAv~~L~~~~~~~~~~f~e~I~l~i~lK~i~~kk-~~~~r~~I~LPh~~~~~~~Vcvf~~~~~~~~a~~~ga~~ 126 (259)
..+.+.+||+.+++....+.++|+|+|+|+|+| ++|+++ +++++|+|.|||+++++.+||||++++++++|+++||++
T Consensus 19 ~~y~l~eAi~~~k~~~~~~~rkF~etVel~i~L-~vDp~k~d~~vrg~V~LPh~~gk~~kV~Vfa~~~~~~eAk~aGad~ 97 (242)
T 3qoy_A 19 KRYTLEEAVDLLKKMEEVLQRRFDETVELAMRL-NVDPRYADQMVRGSVVLPHGLGKPIKVVVFAEGEYAKKAEEAGADY 97 (242)
T ss_dssp CCBCHHHHHHHHHHHHHHHCCSSCCEEEEEEEE-SCCTTSGGGCCEEEEECSCCCSSCCCEEEECCHHHHHHHHHTTCSE
T ss_pred CccCHHHHHHHHHhhcccccCCCCCcEEEEEEe-ccCCCCCCCccceEecCCCCCCCCcEEEEEcCHHHHHHHHHcCCCE
Confidence 456799999999998766678999999999999 899998 899999999999999999999999999999999999999
Q ss_pred eCHHHHHHhh-hcHHHHHHHhhhcCEEEEeHhhHhhhhhccCCCCCCCCCCCccccC--cccHHHHHHHhhc-ceeeEec
Q 036232 127 MDVEALKKLN-KNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTH--QESLEAKVNETKA-VVKFQLK 202 (259)
Q Consensus 127 vg~~eL~k~~-k~~e~~rkL~~~yD~fLad~~i~~~L~rlLGk~f~~~~K~P~~v~~--~~dl~~~I~~~~~-s~~~~~~ 202 (259)
||++||++.+ + +++.+||+|||++++|+.|++ ||+.|.|+++||+|+.. ++|+.++|+++++ ++.|+++
T Consensus 98 vg~~dLi~ki~k------~g~~~fD~~iAtpd~m~~l~~-LGriLGPrGlmP~pk~gTvt~dv~~~V~~~k~G~v~fr~~ 170 (242)
T 3qoy_A 98 VGGDELINKILK------EEWTDFDVAIATPEMMPKVAK-LGRILGPRGLMPSPKTGTVTTNVEQAIKDAKRGRVEFKVD 170 (242)
T ss_dssp EESHHHHHHHHH------HTCCCCSEEEECTTTHHHHGG-GHHHHGGGTCSCCGGGTCBCSCHHHHHHHHHTTEEEEECC
T ss_pred ECcHHHHHHHHh------CCCccCCEEEECHHHHHHHHH-HhHHhccccCCCcccCCccchhHHHHHHHHhcCcEEEEec
Confidence 9999999865 3 347899999999999999998 77777778888888876 5999999999997 7999999
Q ss_pred cccEEEEEEecCCCChhHHhccHHHHHHHHHHhccc--cccCeeEEEEEcCCCCCeecC
Q 036232 203 KVLCMGVAVGNCSMEEKQVFQNVQLSVNFLVSLLKK--SWQNVRCLHLKSTMGRPQRIY 259 (259)
Q Consensus 203 ~~~~i~v~IG~~sm~~eql~eNi~avl~~l~~~~p~--~~~nI~sv~Lkst~sp~lpIy 259 (259)
+++|++++||+++|+++||+|||.+++++|.+.+|. +|+||+++||||||||+++|.
T Consensus 171 k~~~i~v~VG~~~m~~e~L~eNi~a~i~~l~~~~p~~~kg~~Ik~v~lkSTmGp~i~i~ 229 (242)
T 3qoy_A 171 KAGNVHMPVGKISFEKEKLIDNLYAAIDAVVRAKPPGAKGQYIKNMAVSLTMSPSVKLD 229 (242)
T ss_dssp TTSEEEEEEEETTSCHHHHHHHHHHHHHHHHHTCCTTCCSCSEEEEEEEETTSCCEEBC
T ss_pred CCcEEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCcccCCceEEEEEEECCCCCCEEEE
Confidence 999999999999999999999999999999999997 599999999999999999984
No 8
>2wwq_5 50S ribosomal protein L1; ribosomal protein, ribonucleoprotein, nucleotide-binding, protein biosynthesis, translation, zinc-finger; HET: 5MU; 5.80A {Escherichia coli} PDB: 3fik_5 3izt_C* 3izu_C* 3j01_5 3j0t_C* 3j0w_C* 3j0y_C* 3j11_C* 3j12_C* 3j14_C* 3kcr_5 2rdo_9 2gya_2 2gyc_2
Probab=100.00 E-value=4.4e-49 Score=346.97 Aligned_cols=201 Identities=19% Similarity=0.311 Sum_probs=186.6
Q ss_pred CCHHHHHHHHHHHHhhhhhccCCCCCeEEEEEEEcccCCCC-CCccceeEecCCCCCCCcEEEEEeCcccHHHHHHcCCc
Q 036232 47 LSSEVLREAVSTICGDAKEKNRNFVETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPMMKVCMLGDAQHVEQAEKIGMD 125 (259)
Q Consensus 47 v~~~~v~kAv~~L~~~~~~~~~~f~e~I~l~i~lK~i~~kk-~~~~r~~I~LPh~~~~~~~Vcvf~~~~~~~~a~~~ga~ 125 (259)
...+.+.+||+.|++. +..+|+|+|+|+|+| +++|++ ++++||.|.|||+++++.+||||++++++++|+++||+
T Consensus 18 ~~~y~~~eAv~~lk~~---~~~kF~etvel~i~L-~vdp~k~dq~vrg~V~LPh~~~k~~rV~Vfa~~~~~~~Ak~aGad 93 (234)
T 2wwq_5 18 TKQYDINEAIALLKEL---ATAKFVESVDVAVNL-GIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGANAEAAKAAGAE 93 (234)
T ss_dssp SSEECHHHHHHHHHHT---CCCSSCCEEEEEEEE-CSCCCSSTTSCCEEEECSSCCSSCCCEEEECSSSCHHHHHHHTCS
T ss_pred cCccCHHHHHHHHHHh---ccCCCCceEEEEEEE-CCCCcccCcccceEEeCCCCCCCCcEEEEEcCchhHHHHHHcCCC
Confidence 4567899999998754 367899999999999 999997 89999999999999999999999999999999999999
Q ss_pred eeCHHHHHHhhhcHHHHHHHhhhcCEEEEeHhhHhhhhhccCCCCCCCCCCCccccC--cccHHHHHHHhhcc-eeeEec
Q 036232 126 YMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTH--QESLEAKVNETKAV-VKFQLK 202 (259)
Q Consensus 126 ~vg~~eL~k~~k~~e~~rkL~~~yD~fLad~~i~~~L~rlLGk~f~~~~K~P~~v~~--~~dl~~~I~~~~~s-~~~~~~ 202 (259)
++|++||++.++.+ +.+||+||||++||+.|++ ||+.|+|+++||+|+.. +.|+.++|++++++ +.|+++
T Consensus 94 ~vg~edLi~kik~~------~~~fD~~iAtp~~m~~l~~-LGkiLgprGlmP~pk~gTvt~dv~~~V~~~k~g~v~~r~~ 166 (234)
T 2wwq_5 94 LVGMEDLADQIKKG------EMNFDVVIASPDAMRVVGQ-LGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRND 166 (234)
T ss_dssp EECSHHHHHHHHHT------CCCSSEEEECHHHHHHTTS-SCSCCCSSCCSCCTTTTCBCSCSHHHHHHHHHHEEEECCS
T ss_pred EEcHHHHHHHHHcC------cccCCEEEECHHHHHHHHH-HhhhhccCCCCCCccCCCccccHHHHHHHHHcCeeEEEec
Confidence 99999998766433 5899999999999999999 99999999999999986 68999999999986 799999
Q ss_pred cccEEEEEEecCCCChhHHhccHHHHHHHHHHhccccc--cCeeEEEEEcCCCCCeec
Q 036232 203 KVLCMGVAVGNCSMEEKQVFQNVQLSVNFLVSLLKKSW--QNVRCLHLKSTMGRPQRI 258 (259)
Q Consensus 203 ~~~~i~v~IG~~sm~~eql~eNi~avl~~l~~~~p~~~--~nI~sv~Lkst~sp~lpI 258 (259)
+++|++++||+++|++|||+||+.+++++|.+.+|.+| .||+++||+|||||+++|
T Consensus 167 k~~~i~v~VG~~~f~~e~L~eNi~a~i~~l~~~~p~~~kg~~Ik~v~lksTmgp~i~i 224 (234)
T 2wwq_5 167 KNGIIHTTIGKVDFDADKLKENLEALLVALKKAKPTQAKGVYIKKVSISTTMGAGVAV 224 (234)
T ss_dssp SSCEEEEEEEETTSCHHHHHHHHHHHHHHHHHSCCSSCCSCCEEEEEEEESSSCEEEE
T ss_pred CCcEEEEEEcCCCCCHHHHHHHHHHHHHHHHHhCcccccCCeEEEEEEECCCCCCEEE
Confidence 99999999999999999999999999999999999988 599999999999999986
No 9
>3bbo_D Ribosomal protein L1; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=2.2e-48 Score=355.97 Aligned_cols=202 Identities=23% Similarity=0.335 Sum_probs=189.4
Q ss_pred CCHHHHHHHHHHHHhhhhhccCCCCCeEEEEEEEcccCCCC-CCccceeEecCCCCCCCcEEEEEeCcccHHHHHHcCCc
Q 036232 47 LSSEVLREAVSTICGDAKEKNRNFVETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPMMKVCMLGDAQHVEQAEKIGMD 125 (259)
Q Consensus 47 v~~~~v~kAv~~L~~~~~~~~~~f~e~I~l~i~lK~i~~kk-~~~~r~~I~LPh~~~~~~~Vcvf~~~~~~~~a~~~ga~ 125 (259)
-..+.+.+||+.+++.. ..+|+|+|+|+|+| ++|+++ ++++||.|.|||+++++.+||||++++++++|+++||+
T Consensus 132 ~~~Y~l~EAi~llK~~~---~~KFdETVEl~I~L-~vDpkk~dq~vRGtV~LPhgtgk~~kVcVfa~ge~~eeAk~AGAd 207 (352)
T 3bbo_D 132 KQEYDLKTALSLMKQMS---STKFVETAEAHFRL-NIDPKYNDQQLRATVSLPKGTGKTVKIAVLAQGDKIDEAKAAGAD 207 (352)
T ss_dssp SSCCCTTTTHHHHSTTC---CSSSCCEECCEEEE-CSCTTSSTTCCEEEECCTTTSSSSSCEEEECCTTTTHHHHTTTCS
T ss_pred cCCCCHHHHHHHHHhcc---ccCCCceEEEEEEe-CCCCcccccccceeecCCCCCCCccEEEEEeCchhHHHHHHcCCC
Confidence 34577899999999854 67899999999999 999996 99999999999999999999999999999999999999
Q ss_pred eeCHHHHHHhhhcHHHHHHHhhhcCEEEEeHhhHhhhhhccCCCCCCCCCCCccccC--cccHHHHHHHhhcc-eeeEec
Q 036232 126 YMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTH--QESLEAKVNETKAV-VKFQLK 202 (259)
Q Consensus 126 ~vg~~eL~k~~k~~e~~rkL~~~yD~fLad~~i~~~L~rlLGk~f~~~~K~P~~v~~--~~dl~~~I~~~~~s-~~~~~~ 202 (259)
+||+++|++.++ +++.+||+||||++||+.|++ ||+.|+|+++||+|+.. +.|+.++|++++++ +.|+++
T Consensus 208 vVG~edLikkIK------kg~~dFD~fIAtpdmM~~lgr-LGkiLGPRGlMPnPk~GTVt~Dva~aV~e~K~G~v~fR~d 280 (352)
T 3bbo_D 208 IVGGEELIEQIK------GGFMDFDKLIATSDMMAKVAS-LGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVD 280 (352)
T ss_dssp EEECTTTHHHHT------TTCCCCSEEEECSSSHHHHGG-GGGTTTTTTCSCCTTTTCBSSCHHHHHTTTTTCCEEEECC
T ss_pred ccCHHHHHHHHH------hchhhcCEEEECHHHHHHHHh-hcccccccCCCCCCcCCcccccHHHHHHHHHcCeeEEEeC
Confidence 999999998864 578999999999999999999 99999999999999986 58999999999986 799999
Q ss_pred cccEEEEEEecCCCChhHHhccHHHHHHHHHHhcccccc--CeeEEEEEcCCCCCeecC
Q 036232 203 KVLCMGVAVGNCSMEEKQVFQNVQLSVNFLVSLLKKSWQ--NVRCLHLKSTMGRPQRIY 259 (259)
Q Consensus 203 ~~~~i~v~IG~~sm~~eql~eNi~avl~~l~~~~p~~~~--nI~sv~Lkst~sp~lpIy 259 (259)
+++|++++||+++|++|||+|||.+++++|.+.+|++|. ||+++||||||||+++||
T Consensus 281 K~g~ihv~VGk~sfs~EqL~ENI~Avi~~L~k~kP~~~KG~yIksv~LkSTMGPgi~I~ 339 (352)
T 3bbo_D 281 KTGIVHIPFGKLNFEEEDLLINLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLN 339 (352)
T ss_dssp SSCEECCCCEETTSCHHHHHHHHHHHHHHHHTTCCTTCCSCSEEEEECCBSSSCCCEEC
T ss_pred CCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCcccccCceEEEEEEECCCCCCEEEE
Confidence 999999999999999999999999999999999999884 999999999999999997
No 10
>3u42_A 50S ribosomal protein L1; rossmann fold, rRNA binding, RNA binding; 1.35A {Thermus thermophilus} PDB: 3u56_A 3u4m_A 1eg0_N 1vsp_A 2hgj_C 2hgq_C 2hgu_C 1vsa_A 4f9t_A* 4abs_C 3zvp_C 1zho_A 1ml5_c* 1yl3_C 1giy_C 3umy_A 2hw8_A 2j01_C 2j03_C 2om7_K* ...
Probab=100.00 E-value=2.2e-46 Score=328.65 Aligned_cols=196 Identities=25% Similarity=0.374 Sum_probs=177.9
Q ss_pred HHHHHHHHHHHhhhhhccCCCCCeEEEEEEEcccCCCC-CCccceeEecCCCCCCCcEEEEEeCcccHHHHHHcCCceeC
Q 036232 50 EVLREAVSTICGDAKEKNRNFVETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPMMKVCMLGDAQHVEQAEKIGMDYMD 128 (259)
Q Consensus 50 ~~v~kAv~~L~~~~~~~~~~f~e~I~l~i~lK~i~~kk-~~~~r~~I~LPh~~~~~~~Vcvf~~~~~~~~a~~~ga~~vg 128 (259)
+.+.+||+.|+++. ..+|+|+|+|+|+| ++++++ ++++||.|.|||+++++.+|||||+++++++|+++||++||
T Consensus 21 y~~~eAi~~lk~~~---~~kF~etvel~i~L-~vd~~k~dq~vrg~v~LP~g~gk~~kV~Vfa~~~~~~eAk~aGAd~vG 96 (229)
T 3u42_A 21 YTIDEAAHLVKELA---TAKFDETVEVHAKL-GIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVG 96 (229)
T ss_dssp BCHHHHHHHHHHHC---CSSSCCEEEEEEEE-SSCTTCGGGCCEEEEECSSSCSTTSCEEEECCTHHHHHHHHTTCSEEE
T ss_pred CCHHHHHHHHHHhC---CCCCCccEEEEEEE-ccCCCCCCCceeEEEECCCCCCCceEEEEecChHhHHHHHhcCCceeC
Confidence 56999999999876 57899999999999 888987 88999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcHHHHHHHhhhcCEEEEeHhhHhhhh----hccCC-CCCCCCCCCccccCcccHHHHHHHhhc-ceeeEec
Q 036232 129 VEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP----RLLGP-GLNKAGKFPTLVTHQESLEAKVNETKA-VVKFQLK 202 (259)
Q Consensus 129 ~~eL~k~~k~~e~~rkL~~~yD~fLad~~i~~~L~----rlLGk-~f~~~~K~P~~v~~~~dl~~~I~~~~~-s~~~~~~ 202 (259)
++||++.+++. +.+||+|||++++|+.++ ++||| |+||+.|.|| ++.|+.++|+++++ ++.|+.+
T Consensus 97 ~~dLi~kIk~g------~~~fD~~iAtpd~m~~vg~~LG~iLGPrGlMPnpk~GT---vt~dv~~~v~~~K~g~v~~r~d 167 (229)
T 3u42_A 97 GEEIIQKILDG------WMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGT---VGFNIGEIIREIKAGRIEFRND 167 (229)
T ss_dssp CTHHHHHHHTT------CCCCSEEEECGGGHHHHHHHHHHHHHHHTCCCCGGGTC---BSSCHHHHHHHHHTTEEEEECC
T ss_pred cHHHHHHHhcC------CccccEEEEchHHHHHHHHhhccccccccccccCCCCC---CCCCHHHHHHHHhCceEEEEeC
Confidence 99999887654 679999999999998874 56666 6666666666 47899999999986 7999999
Q ss_pred cccEEEEEEecCCCChhHHhccHHHHHHHHHHhccccccC--eeEEEEEcCCCCCeec
Q 036232 203 KVLCMGVAVGNCSMEEKQVFQNVQLSVNFLVSLLKKSWQN--VRCLHLKSTMGRPQRI 258 (259)
Q Consensus 203 ~~~~i~v~IG~~sm~~eql~eNi~avl~~l~~~~p~~~~n--I~sv~Lkst~sp~lpI 258 (259)
+.++++++||+++|++|||.||+.+++++|.+.+|.+|.+ |+++||+|||||+++|
T Consensus 168 k~g~i~~~IGk~~f~~e~L~eNi~a~i~~i~~~kp~~~kg~~ik~v~lssTmGp~i~i 225 (229)
T 3u42_A 168 KTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTVMGPSVRI 225 (229)
T ss_dssp TTSEEEEEEEETTSCHHHHHHHHHHHHHHHHHTCCTTCCSCSEEEEEEECSSSCCEEB
T ss_pred CCCeecccccCCCCCHHHHHHHHHHHHHHHHHhCccccCCCeEEEEEEECCCCcCeEe
Confidence 9999999999999999999999999999999999987655 9999999999999987
No 11
>2ftc_A Mitochondrial ribosomal protein L1; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=100.00 E-value=2.8e-41 Score=288.89 Aligned_cols=175 Identities=17% Similarity=0.210 Sum_probs=155.2
Q ss_pred eEEEEEEEcccCCCCCCccceeEecCCCCCCCc-EEEEEeCc-ccHHHHHHcCCceeCHHHHHHhhhcHHHHHHHhhhcC
Q 036232 73 TIELQIGLKNYDPQKDKRFSGSVKLPHIPRPMM-KVCMLGDA-QHVEQAEKIGMDYMDVEALKKLNKNKKLVKKLAKKYH 150 (259)
Q Consensus 73 ~I~l~i~lK~i~~kk~~~~r~~I~LPh~~~~~~-~Vcvf~~~-~~~~~a~~~ga~~vg~~eL~k~~k~~e~~rkL~~~yD 150 (259)
.|+|++++++ .++..++||.|.|||++++.. +||||+++ +++++|+++||+++|++||++.++.. +.+||
T Consensus 2 ~ieL~m~l~~--~r~~~~~rg~V~LPhg~~k~~~~V~Vfa~~~~~~~~Ak~aGad~vg~~dLi~ki~~~------~~~fD 73 (189)
T 2ftc_A 2 DLTLDMALGK--KKNVEPFTSVLSLPYPFASEINKVAVFTENASEVKIAEENGAAFAGGTSLIQKIWDD------EIVAD 73 (189)
T ss_pred eEEEEEEecC--CccCcccceEEECCCCCCCCCCEEEEEeCChhHHHHHHHcCCCCcCHHHHHHHHHcC------CccCC
Confidence 4789999966 356777899999999986654 99999998 57899999999999999998776544 48999
Q ss_pred EEEEeHhhHhhhhhccCCCCCCCCCCCccccC--cccHHHHHHHhhcceeeEecccc--EEEEEEecCCCChhHHhccHH
Q 036232 151 AFLASEAVIKQIPRLLGPGLNKAGKFPTLVTH--QESLEAKVNETKAVVKFQLKKVL--CMGVAVGNCSMEEKQVFQNVQ 226 (259)
Q Consensus 151 ~fLad~~i~~~L~rlLGk~f~~~~K~P~~v~~--~~dl~~~I~~~~~s~~~~~~~~~--~i~v~IG~~sm~~eql~eNi~ 226 (259)
+|||++++|+.|++++|+ |. +|||+|+.. +.|+.++|++++++..|++++.+ |++++||+++|++|||+||+.
T Consensus 74 ~~iAtp~~m~~l~~l~~~-Lg--~KmP~pk~gTvt~dv~~~v~~~k~g~~~r~~k~~~~~i~v~VG~~~~~~e~L~eNi~ 150 (189)
T 2ftc_A 74 FYVAVPEIMPELNRLRKK-LN--KKYPKLSRNSIGRDIPKMLELFKNGHEIKVDEERENFLQTKIATLDMSSDQIAANLQ 150 (189)
T ss_pred EEEECHHHHHHHHHhhcc-cc--CCCCcccCCCccccHHHHHHHHhcceEEEeccCCCcEEEEEEECCCCCHHHHHHHHH
Confidence 999999999999997554 43 347777765 68999999999998899999998 999999999999999999999
Q ss_pred HHHHHHHHhccccc-cCeeEEEEEcCCCCCeec
Q 036232 227 LSVNFLVSLLKKSW-QNVRCLHLKSTMGRPQRI 258 (259)
Q Consensus 227 avl~~l~~~~p~~~-~nI~sv~Lkst~sp~lpI 258 (259)
+++++|.+.+|++| .||++++|+|||||+++|
T Consensus 151 a~i~~l~~~~p~~~g~~ik~v~lssTmgp~i~i 183 (189)
T 2ftc_A 151 AVINEVCRHRPLNLGPFVVRAFLRSSTSEGLLL 183 (189)
T ss_pred HHHHHHHHhCchhcCccEEEEEEECCCCCCEEE
Confidence 99999999999998 899999999999999986
No 12
>2ov7_A 50S ribosomal protein L1; 2.30A {Thermus thermophilus} PDB: 2oum_A 2vpl_A
Probab=99.93 E-value=8.5e-26 Score=183.00 Aligned_cols=116 Identities=25% Similarity=0.392 Sum_probs=105.3
Q ss_pred CCCCHH---HHHHHHHHHHhhhhhccCCCCCeEEEEEEEcccCCCC-CCccceeEecCCCCCCCcEEEEEeCcccHHHHH
Q 036232 45 SKLSSE---VLREAVSTICGDAKEKNRNFVETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPMMKVCMLGDAQHVEQAE 120 (259)
Q Consensus 45 s~v~~~---~v~kAv~~L~~~~~~~~~~f~e~I~l~i~lK~i~~kk-~~~~r~~I~LPh~~~~~~~Vcvf~~~~~~~~a~ 120 (259)
+.++++ .+.+||+.+++ .+..+|+|+|+|+|+| ++||++ ++++||.|.|||+
T Consensus 12 ~kv~~~~~y~~~eAi~~~k~---~~~~kF~EtVel~i~L-~vDprk~dq~vrgtV~LP~g-------------------- 67 (137)
T 2ov7_A 12 EKVDPNKIYTIDEAAHLVKE---LATAKFDETVEVHAKL-GIDPRRSDQNVRGTVSLPHG-------------------- 67 (137)
T ss_dssp TTSCTTCCBCHHHHHHHHHH---TCCSSSCCEEEEEEEE-SSCTTCSSCCCEEEEECTTS--------------------
T ss_pred HhcCcccccCHHHHHHHHHh---cccCCCCccEEEEEEe-CCCCccccceeeEEEEcCCC--------------------
Confidence 445543 35799999864 3478999999999999 999997 9999999999997
Q ss_pred HcCCceeCHHHHHHhhhcHHHHHHHhhhcCEEEEeHhhHhhhhhccCCCCCCCCCCCccccCcccHHHHHHHhhcceeeE
Q 036232 121 KIGMDYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLEAKVNETKAVVKFQ 200 (259)
Q Consensus 121 ~~ga~~vg~~eL~k~~k~~e~~rkL~~~yD~fLad~~i~~~L~rlLGk~f~~~~K~P~~v~~~~dl~~~I~~~~~s~~~~ 200 (259)
+++.|+
T Consensus 68 --------------------------------------------------------------------------g~v~fr 73 (137)
T 2ov7_A 68 --------------------------------------------------------------------------GRIEFR 73 (137)
T ss_dssp --------------------------------------------------------------------------CEEEEE
T ss_pred --------------------------------------------------------------------------CeEEEE
Confidence 889999
Q ss_pred eccccEEEEEEecCCCChhHHhccHHHHHHHHHHhccccc--cCeeEEEEEcCCCCCeec
Q 036232 201 LKKVLCMGVAVGNCSMEEKQVFQNVQLSVNFLVSLLKKSW--QNVRCLHLKSTMGRPQRI 258 (259)
Q Consensus 201 ~~~~~~i~v~IG~~sm~~eql~eNi~avl~~l~~~~p~~~--~nI~sv~Lkst~sp~lpI 258 (259)
+++.+|++++||+++|++|||+||+.+++++|.+.+|.+| .||+++||+|||||+++|
T Consensus 74 ~dk~~~ih~~VGk~sf~~e~L~eNi~a~i~~l~~~kp~~~kg~~ik~v~issTMGp~i~i 133 (137)
T 2ov7_A 74 NDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMGPSVRI 133 (137)
T ss_dssp CCTTSEEEEEEEETTSCHHHHHHHHHHHHHHHHTTSCSSCCSCSEEEEEEEETTSCCEEB
T ss_pred ECCCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHhCcccccCceEEEEEEECCCCCCEEe
Confidence 9999999999999999999999999999999999999987 699999999999999986
No 13
>3u42_A 50S ribosomal protein L1; rossmann fold, rRNA binding, RNA binding; 1.35A {Thermus thermophilus} PDB: 3u56_A 3u4m_A 1eg0_N 1vsp_A 2hgj_C 2hgq_C 2hgu_C 1vsa_A 4f9t_A* 4abs_C 3zvp_C 1zho_A 1ml5_c* 1yl3_C 1giy_C 3umy_A 2hw8_A 2j01_C 2j03_C 2om7_K* ...
Probab=67.16 E-value=1.2 Score=38.30 Aligned_cols=10 Identities=10% Similarity=0.199 Sum_probs=6.5
Q ss_pred CCeEEEEEEE
Q 036232 71 VETIELQIGL 80 (259)
Q Consensus 71 ~e~I~l~i~l 80 (259)
++.|.=.|.|
T Consensus 56 dq~vrg~v~L 65 (229)
T 3u42_A 56 DQNVRGTVSL 65 (229)
T ss_dssp GGCCEEEEEC
T ss_pred CCceeEEEEC
Confidence 4556666777
No 14
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=58.55 E-value=6.8 Score=29.88 Aligned_cols=95 Identities=15% Similarity=0.212 Sum_probs=57.7
Q ss_pred cEEEEEeCcccHHHHHHcCCcee---CHHHHHHhhhcHHHHHHHhhhcCEEEEeHhhHhhhhhccCCCCCCCCCCCcccc
Q 036232 105 MKVCMLGDAQHVEQAEKIGMDYM---DVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVT 181 (259)
Q Consensus 105 ~~Vcvf~~~~~~~~a~~~ga~~v---g~~eL~k~~k~~e~~rkL~~~yD~fLad~~i~~~L~rlLGk~f~~~~K~P~~v~ 181 (259)
.+|+|++|.+...--+-+|++.. +.+++.+.++.. +..+|.+++.+.++...++..+-. +.+...|+.+.
T Consensus 3 mKiaVIGD~Dtv~GFrLaGie~~~v~~~ee~~~~~~~l-----~~~digIIlIte~ia~~i~~~i~~--~~~~~~P~Ive 75 (115)
T 3aon_B 3 YKIGVVGDKDSVSPFRLFGFDVQHGTTKTEIRKTIDEM-----AKNEYGVIYITEQCANLVPETIER--YKGQLTPAIIL 75 (115)
T ss_dssp EEEEEESCHHHHGGGGGGTCEEECCCSHHHHHHHHHHH-----HHTTEEEEEEEHHHHTTCHHHHHH--HHTSSSCEEEE
T ss_pred eEEEEEECHHHHHHHHHcCCeEEEeCCHHHHHHHHHHH-----HhcCceEEEEeHHHHHHhHHHHHH--HhCCCCCEEEE
Confidence 47889998554444456788632 456666655432 123899999999999999887755 34556788774
Q ss_pred C-----c-----ccHHHHHHHhhc-ceeeEeccccE
Q 036232 182 H-----Q-----ESLEAKVNETKA-VVKFQLKKVLC 206 (259)
Q Consensus 182 ~-----~-----~dl~~~I~~~~~-s~~~~~~~~~~ 206 (259)
. + +.+.+.++++.+ .+.|....|-+
T Consensus 76 IPs~~g~~~~~~~~i~~~V~~aiG~di~~~~~~~~~ 111 (115)
T 3aon_B 76 IPSHQGTLGIGLEEIQNSVEKAVGQNILSGPSSGEN 111 (115)
T ss_dssp ECBTTBCCSHHHHHHHHHHHHHTTCC----------
T ss_pred ECCCCCCCCccHHHHHHHHHHHhCcceEecCCCCcc
Confidence 2 1 258888888887 56666554433
No 15
>3qoy_A 50S ribosomal protein L1; beta-alpha-beta, structural constituent of ribosome, rRNA BI regulation of translation, translation, ribosomal RNA; 2.10A {Aquifex aeolicus}
Probab=57.86 E-value=3 Score=36.12 Aligned_cols=22 Identities=36% Similarity=0.638 Sum_probs=18.4
Q ss_pred HhhhhhccCC-CCCCCCCCCccc
Q 036232 159 IKQIPRLLGP-GLNKAGKFPTLV 180 (259)
Q Consensus 159 ~~~L~rlLGk-~f~~~~K~P~~v 180 (259)
++.|+++||| |+||+.|.+|+.
T Consensus 128 l~~LGriLGPrGlmP~pk~gTvt 150 (242)
T 3qoy_A 128 VAKLGRILGPRGLMPSPKTGTVT 150 (242)
T ss_dssp HGGGHHHHGGGTCSCCGGGTCBC
T ss_pred HHHHhHHhccccCCCcccCCccc
Confidence 4568999999 999999999743
No 16
>2wwq_5 50S ribosomal protein L1; ribosomal protein, ribonucleoprotein, nucleotide-binding, protein biosynthesis, translation, zinc-finger; HET: 5MU; 5.80A {Escherichia coli} PDB: 3fik_5 3izt_C* 3izu_C* 3j01_5 3j0t_C* 3j0w_C* 3j0y_C* 3j11_C* 3j12_C* 3j14_C* 3kcr_5 2rdo_9 2gya_2 2gyc_2
Probab=52.03 E-value=5.2 Score=34.38 Aligned_cols=21 Identities=38% Similarity=0.624 Sum_probs=18.1
Q ss_pred HhhhhhccCC-CCCCCCCCCcc
Q 036232 159 IKQIPRLLGP-GLNKAGKFPTL 179 (259)
Q Consensus 159 ~~~L~rlLGk-~f~~~~K~P~~ 179 (259)
++.|+++||| ++||+.|.+|+
T Consensus 124 l~~LGkiLgprGlmP~pk~gTv 145 (234)
T 2wwq_5 124 VGQLGQVLGPRGLMPNPKVGTV 145 (234)
T ss_dssp TTSSCSCCCSSCCSCCTTTTCB
T ss_pred HHHHhhhhccCCCCCCccCCCc
Confidence 3558999999 99999999973
No 17
>3bbo_D Ribosomal protein L1; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=45.44 E-value=11 Score=34.30 Aligned_cols=20 Identities=40% Similarity=0.640 Sum_probs=17.3
Q ss_pred HhhhhhccCC-CCCCCCCCCc
Q 036232 159 IKQIPRLLGP-GLNKAGKFPT 178 (259)
Q Consensus 159 ~~~L~rlLGk-~f~~~~K~P~ 178 (259)
++.|+++||| ++||+.|.+|
T Consensus 238 lgrLGkiLGPRGlMPnPk~GT 258 (352)
T 3bbo_D 238 VASLGRILGPRGLMPTPKAGT 258 (352)
T ss_dssp HGGGGGTTTTTTCSCCTTTTC
T ss_pred HHhhcccccccCCCCCCcCCc
Confidence 4568999999 9999999886
No 18
>3j21_A 50S ribosomal protein L1P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=40.08 E-value=13 Score=31.33 Aligned_cols=21 Identities=38% Similarity=0.468 Sum_probs=17.3
Q ss_pred Hhh-hhhccCC-CCCCCCCCCcc
Q 036232 159 IKQ-IPRLLGP-GLNKAGKFPTL 179 (259)
Q Consensus 159 ~~~-L~rlLGk-~f~~~~K~P~~ 179 (259)
++. |+++||| ++||+.+.++.
T Consensus 117 l~k~LGk~LgprgkmP~pk~gtv 139 (216)
T 3j21_A 117 IGRYLGRYLGPRNKMPVVVPPTL 139 (216)
T ss_dssp HHHHHHHHHTTSSSSCCTTTTCB
T ss_pred HHHHHHHHhccCCccCCCcCCcH
Confidence 444 8999998 99999998884
No 19
>2qai_A V-type ATP synthase subunit F; VATF_pyrfu, ATPF, NESG, structural genomics, PSI-2, protein structure initiative; 2.40A {Pyrococcus furiosus}
Probab=39.27 E-value=61 Score=24.32 Aligned_cols=77 Identities=19% Similarity=0.303 Sum_probs=50.5
Q ss_pred EEEEEeCcccHHHHHHcCCce--e--CH----HHHHHhhhcHHHHHHHh--hhcCEEEEeHhhHhhhh--hccCCCCCCC
Q 036232 106 KVCMLGDAQHVEQAEKIGMDY--M--DV----EALKKLNKNKKLVKKLA--KKYHAFLASEAVIKQIP--RLLGPGLNKA 173 (259)
Q Consensus 106 ~Vcvf~~~~~~~~a~~~ga~~--v--g~----~eL~k~~k~~e~~rkL~--~~yD~fLad~~i~~~L~--rlLGk~f~~~ 173 (259)
+|+|++|.+...--+-+|+.. + .. +++.+.++ ++. .+|.+++.+.++...++ ..+-
T Consensus 2 KIaVIGD~Dtv~GFrLaGi~~~~v~~~~~t~~ee~~~~~~------~l~~~~digIIlIte~ia~~i~~~~~i~------ 69 (111)
T 2qai_A 2 KIVVMGDSDTVVGFRLAGVHEAYEYDESLESVERARNKLR------ELLERDDVGIILITERLAQRIGSLPEVK------ 69 (111)
T ss_dssp EEEEEECHHHHHHHHHHTCSEEEECCSSHHHHHHHHHHHH------HHHTCTTEEEEEEEHHHHHHHCSCCCCS------
T ss_pred EEEEEECHHHHHHHHHcCCceEEEecCCCCCHHHHHHHHH------HHhhCCCeEEEEEcHHHHhhcccccccC------
Confidence 688999865555556678872 3 44 56665543 333 57999999999999998 5442
Q ss_pred CCCCccccC---------cccHHHHHHHhhcc
Q 036232 174 GKFPTLVTH---------QESLEAKVNETKAV 196 (259)
Q Consensus 174 ~K~P~~v~~---------~~dl~~~I~~~~~s 196 (259)
.|+.+.. .+.+.+.++++.+.
T Consensus 70 --~P~IleIPs~~g~~~~~d~i~~~V~~aiG~ 99 (111)
T 2qai_A 70 --FPIILQIPDKFGSIYGEDILRDVVRRAIGV 99 (111)
T ss_dssp --SSEEEEECTTC------CTHHHHHHHHC--
T ss_pred --CCEEEEECCCCCCCchHHHHHHHHHHHhCh
Confidence 6666532 14577778877663
No 20
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=38.31 E-value=41 Score=25.08 Aligned_cols=73 Identities=15% Similarity=0.245 Sum_probs=47.1
Q ss_pred CcEEEEEeCcccHHHHHHcCCce--e-CHHHHHHhhhcHHHHHHHhhhcCEEEEeHhhHhhhhhccCCCCCCCCCCCccc
Q 036232 104 MMKVCMLGDAQHVEQAEKIGMDY--M-DVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLV 180 (259)
Q Consensus 104 ~~~Vcvf~~~~~~~~a~~~ga~~--v-g~~eL~k~~k~~e~~rkL~~~yD~fLad~~i~~~L~rlLGk~f~~~~K~P~~v 180 (259)
..+++|++|.+...--+-+|++. + +.+++.+.++..-. ..+|.+++.+.++...++..+-. +......|+.+
T Consensus 3 ~mkiaVIgD~dtv~GFrLaGi~~~~v~~~ee~~~~~~~l~~----~~digIIlIte~~a~~i~~~i~~-~~~~~~~P~Il 77 (109)
T 2d00_A 3 PVRMAVIADPETAQGFRLAGLEGYGASSAEEAQSLLETLVE----RGGYALVAVDEALLPDPERAVER-LMRGRDLPVLL 77 (109)
T ss_dssp CCCEEEEECHHHHHHHHHTTSEEEECSSHHHHHHHHHHHHH----HCCCSEEEEETTTCSCHHHHHHH-HTTCCCCCEEE
T ss_pred ccEEEEEeCHHHHHHHHHcCCeEEEeCCHHHHHHHHHHHhh----CCCeEEEEEeHHHHHhhHHHHHH-HHhCCCCeEEE
Confidence 35799999965555566788873 2 55666665543210 24799999999998887765533 22244567766
Q ss_pred c
Q 036232 181 T 181 (259)
Q Consensus 181 ~ 181 (259)
.
T Consensus 78 ~ 78 (109)
T 2d00_A 78 P 78 (109)
T ss_dssp E
T ss_pred E
Confidence 4
No 21
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=35.65 E-value=31 Score=25.56 Aligned_cols=72 Identities=15% Similarity=0.182 Sum_probs=47.2
Q ss_pred EEEEEeCcccHHHHHHcCCce---e-CHHHHHHhhhcHHHHHHHhhhcCEEEEeHhhHhhhhhccCCCCCCCCCCCcccc
Q 036232 106 KVCMLGDAQHVEQAEKIGMDY---M-DVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVT 181 (259)
Q Consensus 106 ~Vcvf~~~~~~~~a~~~ga~~---v-g~~eL~k~~k~~e~~rkL~~~yD~fLad~~i~~~L~rlLGk~f~~~~K~P~~v~ 181 (259)
-+.|+.+.+..---+-+|+.. + +.+++.+.++..-. ..+|.+++.+..+...++..+-. +..+...|+.+.
T Consensus 11 ~~aVIGD~Dtv~GFrLaGi~~~~~~~~~ee~~~~~~~l~~----~~digIIlIte~ia~~i~~~i~~-~~~~~~~P~Iie 85 (102)
T 2i4r_A 11 MLAVVGDPDFTIGFMLAGISDIYEVTSDEEIVKAVEDVLK----RDDVGVVIMKQEYLKKLPPVLRR-EIDEKVEPTFVS 85 (102)
T ss_dssp EEEEEECHHHHHHHHHTTCCCEEECCSHHHHHHHHHHHHH----CSSEEEEEEEGGGSTTSCHHHHT-TTTTCCSSEEEE
T ss_pred eEEEEcCHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHhh----CCCeEEEEEeHHHHHHHHHHHHH-HHhCCCccEEEE
Confidence 466777765555566778872 2 45666665543210 24689999999999999887755 333447888875
Q ss_pred C
Q 036232 182 H 182 (259)
Q Consensus 182 ~ 182 (259)
.
T Consensus 86 I 86 (102)
T 2i4r_A 86 V 86 (102)
T ss_dssp E
T ss_pred E
Confidence 3
No 22
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=27.20 E-value=56 Score=24.28 Aligned_cols=52 Identities=15% Similarity=0.056 Sum_probs=32.6
Q ss_pred CCCcEEEEEeCccc---------HHHHHHcCCce----eCHHHHHHhhhcHHHHHHHhhhcCEEEEeHhhHhhhh
Q 036232 102 RPMMKVCMLGDAQH---------VEQAEKIGMDY----MDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP 163 (259)
Q Consensus 102 ~~~~~Vcvf~~~~~---------~~~a~~~ga~~----vg~~eL~k~~k~~e~~rkL~~~yD~fLad~~i~~~L~ 163 (259)
.+..+|+|+|-.-. .+.|++.|+++ .+..++.+. ..+||++|.-|.+--.+.
T Consensus 4 ~~~mkIlL~C~aGmSTsllv~km~~~a~~~gi~v~i~a~~~~~~~~~----------~~~~DvvLLgPQV~y~~~ 68 (108)
T 3nbm_A 4 SKELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYDI----------MGVYDLIILAPQVRSYYR 68 (108)
T ss_dssp -CCEEEEEEESSSSHHHHHHHHHHHHHHHHTCSEEEEEEETTSCTTT----------GGGCSEEEECGGGGGGHH
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEcchHHHHhh----------ccCCCEEEEChHHHHHHH
Confidence 45678999996421 35677788763 234443222 467999998887754443
No 23
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=23.24 E-value=60 Score=25.97 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=18.4
Q ss_pred CcEEEEEeCc------ccHHHHHHcCCceeC
Q 036232 104 MMKVCMLGDA------QHVEQAEKIGMDYMD 128 (259)
Q Consensus 104 ~~~Vcvf~~~------~~~~~a~~~ga~~vg 128 (259)
..++|+|++. +..+.+.+.|++.++
T Consensus 14 ~~~l~~It~~~~~~~~~~~~~~~~~G~~~i~ 44 (215)
T 1xi3_A 14 KLKLYVITDRRLKPEVESVREALEGGATAIQ 44 (215)
T ss_dssp HTSEEEECCTTTSCHHHHHHHHHHTTCSEEE
T ss_pred CCCEEEEECCchhhHHHHHHHHHHCCCCEEE
Confidence 4478999986 446677788998654
No 24
>2ov6_A V-type ATP synthase subunit F; F subunit, A1AO ATP synthase, hydrolase; NMR {Methanosarcina mazei}
Probab=22.68 E-value=1.3e+02 Score=21.79 Aligned_cols=71 Identities=17% Similarity=0.248 Sum_probs=44.4
Q ss_pred EEEEEeCcccHHHHHHcCCc-ee---CHHHHHHhhhcHHHHHHHhhhcCEEEEeHhhHhhhhhccCCCCCCCCCCCcccc
Q 036232 106 KVCMLGDAQHVEQAEKIGMD-YM---DVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVT 181 (259)
Q Consensus 106 ~Vcvf~~~~~~~~a~~~ga~-~v---g~~eL~k~~k~~e~~rkL~~~yD~fLad~~i~~~L~rlLGk~f~~~~K~P~~v~ 181 (259)
+|+|+++.+...--+-+|+. ++ +.+++.+.++..-. ..+|.+++.+.++...++..+-. .+.+...|+.+.
T Consensus 2 kiaVIGD~dtv~GFrLaGi~~v~~v~~~ee~~~~~~~l~~----~~digIIlite~~a~~i~~~i~~-~~~~~~~P~Iv~ 76 (101)
T 2ov6_A 2 ELAVIGKSEFVTGFRLAGISKVYETPDIPATESAVRSVLE----DKSVGILVMHNDDIGNLPEVLRK-NLNESVQPTVVA 76 (101)
T ss_dssp CEEEEECHHHHHHHHHHTCCEEEECCSTTTHHHHHHHHHH----HTSSSEEEEEHHHHTTCTTTTHH-HHHHHCCSCEEE
T ss_pred EEEEEECHHHHHHHHHcCCCceEecCCHHHHHHHHHHHhh----CCCeEEEEEcHHHHHHhHHHHHH-HHhCCCCcEEEE
Confidence 68899986555555677887 33 55666665443210 24799999999999888765511 111235566553
No 25
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=21.10 E-value=86 Score=23.26 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=14.8
Q ss_pred HHHHHHcCCceeCHHHHHHhh
Q 036232 116 VEQAEKIGMDYMDVEALKKLN 136 (259)
Q Consensus 116 ~~~a~~~ga~~vg~~eL~k~~ 136 (259)
.+.|++.|+++++.++|.+.+
T Consensus 85 ~~kA~~lgI~Ii~E~~f~~ll 105 (109)
T 2k6g_A 85 SDKAAALGTKIIDEDGLLNLI 105 (109)
T ss_dssp HHHHHHHTCEEECHHHHHHHH
T ss_pred HHHHHHcCCeEEeHHHHHHHH
Confidence 456777777777777776654
Done!