RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 036232
(259 letters)
>gnl|CDD|185405 PTZ00029, PTZ00029, 60S ribosomal protein L10a; Provisional.
Length = 216
Score = 342 bits (878), Expect = e-120
Identities = 151/215 (70%), Positives = 189/215 (87%)
Query: 45 SKLSSEVLREAVSTICGDAKEKNRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPM 104
SKLSSE LR+A++ I ++EK R FVET+ELQIGLK+YD QKDKRFSGSVKLP++P+P
Sbjct: 2 SKLSSEALRKAIAEILEGSEEKKRKFVETVELQIGLKDYDTQKDKRFSGSVKLPNVPKPN 61
Query: 105 MKVCMLGDAQHVEQAEKIGMDYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPR 164
+KVC+LGDA H ++A+K+G+D+MD+E LKK NKNKKLVKKLAKKY AFLAS++++ QIPR
Sbjct: 62 LKVCVLGDAVHCDEAKKLGLDFMDIEGLKKFNKNKKLVKKLAKKYDAFLASQSLLPQIPR 121
Query: 165 LLGPGLNKAGKFPTLVTHQESLEAKVNETKAVVKFQLKKVLCMGVAVGNCSMEEKQVFQN 224
LLGPGLNKAGKFPTL+TH + +E K+NE K+ VKFQLKKVLC+GVAVGN M E+Q+ QN
Sbjct: 122 LLGPGLNKAGKFPTLITHNDDIEDKINELKSSVKFQLKKVLCLGVAVGNVEMTEEQLRQN 181
Query: 225 VQLSVNFLVSLLKKSWQNVRCLHLKSTMGRPQRIY 259
+ LS+NFLVSLLKK+WQN++ LH+KSTMG+PQRIY
Sbjct: 182 IVLSINFLVSLLKKNWQNIKTLHIKSTMGKPQRIY 216
>gnl|CDD|140252 PTZ00225, PTZ00225, 60S ribosomal protein L10a; Provisional.
Length = 214
Score = 234 bits (599), Expect = 3e-78
Identities = 122/215 (56%), Positives = 163/215 (75%), Gaps = 2/215 (0%)
Query: 45 SKLSSEVLREAVSTICGDAKEKNRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPM 104
SK+ + L EA+ + KE R F E+I+LQ+ LKNYDPQKDKRFSGS+KLP++ RP
Sbjct: 2 SKIPPQTLSEAIQAVLKVDKE--RKFKESIDLQVNLKNYDPQKDKRFSGSLKLPNVCRPR 59
Query: 105 MKVCMLGDAQHVEQAEKIGMDYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPR 164
M VC+L D H + A+K G+ M+ E LKKLNKNKKLVKK+ +Y AFL SE++IK +PR
Sbjct: 60 MTVCLLCDLVHEDIAKKEGVPTMNQEELKKLNKNKKLVKKMCNQYDAFLCSESIIKTVPR 119
Query: 165 LLGPGLNKAGKFPTLVTHQESLEAKVNETKAVVKFQLKKVLCMGVAVGNCSMEEKQVFQN 224
L+GP +++ GKFPT+ + ESL KV E ++ VKFQLKKVLC+G VG+ M E+Q+ QN
Sbjct: 120 LVGPHMHRMGKFPTVCSPSESLPDKVVELRSTVKFQLKKVLCLGTCVGHVEMTEEQLRQN 179
Query: 225 VQLSVNFLVSLLKKSWQNVRCLHLKSTMGRPQRIY 259
V +++NFLVSLLKK+WQN++ ++KSTMG+PQRIY
Sbjct: 180 VVMAINFLVSLLKKNWQNLKSAYIKSTMGKPQRIY 214
>gnl|CDD|238235 cd00403, Ribosomal_L1, Ribosomal protein L1. The L1 protein,
located near the E-site of the ribosome, forms part of
the L1 stalk along with 23S rRNA. In bacteria and
archaea, L1 functions both as a ribosomal protein that
binds rRNA, and as a translation repressor that binds
its own mRNA. Like several other large ribosomal
subunit proteins, L1 displays RNA chaperone activity.
L1 is one of the largest ribosomal proteins. It is
composed of two domains that cycle between open and
closed conformations via a hinge motion. The RNA-binding
site of L1 is highly conserved, with both mRNA and rRNA
binding the same binding site.
Length = 208
Score = 205 bits (525), Expect = 7e-67
Identities = 78/199 (39%), Positives = 111/199 (55%), Gaps = 4/199 (2%)
Query: 63 AKEKNRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPMMKVCMLGDAQHVEQAEKI 122
K R F ET+ELQI LK D +KD+R G+V LPH +KVC+ + ++A+
Sbjct: 11 TSVKKRKFDETVELQINLKKDDRKKDQRIRGTVILPHGLGKDVKVCVFAKDEQAKEAKAA 70
Query: 123 GMDYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTH 182
G D + E LKK KN + KKLAK + FLA ++ +P+LLG L GK P T
Sbjct: 71 GADVVGGEDLKKKIKNGEA-KKLAKDFDLFLADPRIMMLLPKLLGKVLGPRGKMPNPKTG 129
Query: 183 Q--ESLEAKVNETKAVVKFQLKKVLCMGVAVGNCSMEEKQVFQNVQLSVNFLVSLLK-KS 239
E L + E K+ V+F+L K C+ V VG SM +Q+ +N++ +N LV L K
Sbjct: 130 TVTEDLAKAIEEAKSSVEFRLDKGGCIHVPVGKVSMSPEQLVENIEAVINALVKKLPSKK 189
Query: 240 WQNVRCLHLKSTMGRPQRI 258
QN++ ++LK+TMG I
Sbjct: 190 GQNIKSIYLKTTMGPSLPI 208
>gnl|CDD|216061 pfam00687, Ribosomal_L1, Ribosomal protein L1p/L10e family. This
family includes prokaryotic L1 and eukaryotic L10.
Length = 200
Score = 194 bits (495), Expect = 2e-62
Identities = 70/196 (35%), Positives = 102/196 (52%), Gaps = 5/196 (2%)
Query: 64 KEKNRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPMMKVCMLGDAQHVEQAEKI- 122
K R F ET+ELQI LK +KD+ G+V LPH +KVC++ + E
Sbjct: 6 KTAKRKFDETVELQINLKKDPRKKDQNVRGTVVLPHGLGKDVKVCVIAKDPEAKAKEAKD 65
Query: 123 -GMDYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVT 181
G D + E LK+ K KK +KLAK + FLA ++ +P+LLG L GK P T
Sbjct: 66 AGADVVGGEDLKEKYKIKKG-RKLAKDFDVFLADPDIMPLLPKLLGKVLGPRGKMPNPKT 124
Query: 182 H-QESLEAKVNETKAVVKFQLK-KVLCMGVAVGNCSMEEKQVFQNVQLSVNFLVSLLKKS 239
+ + E K+ K K C+ V VG SM +++ +N++ +N LV L K
Sbjct: 125 TVTPDVAKAIEEAKSGTVEFRKDKGGCIHVKVGKVSMSPEELVENIEAVINALVKKLPKG 184
Query: 240 WQNVRCLHLKSTMGRP 255
WQN++ ++LK+TMG
Sbjct: 185 WQNIKSVYLKTTMGPS 200
>gnl|CDD|223159 COG0081, RplA, Ribosomal protein L1 [Translation, ribosomal
structure and biogenesis].
Length = 228
Score = 143 bits (364), Expect = 2e-42
Identities = 60/230 (26%), Positives = 108/230 (46%), Gaps = 14/230 (6%)
Query: 37 KDKSEIENSKLSSEVLREAVSTICGDAKE-KNRNFVETIELQIGLKNYDPQK-DKRFSGS 94
K K S+ ++ KE R F ET+E+ + LK DP+K D+R GS
Sbjct: 4 KSKRYRAASEKVDRNKLYSLEEAVKLLKETSKRKFDETVEVAVNLK-VDPRKPDQRVRGS 62
Query: 95 VKLPHIPRPMMKVCMLGDAQHVEQAEKIGMDYMDVEALKKLNKNKKLVKKLAKKYHAFLA 154
V LP+ ++V + D + E+A+ G DY+ E L +L KN + AK + F+A
Sbjct: 63 VVLPNGTGKTVRVAVFADGEKAEEAKAAGADYVGGEDLIELIKNGR-----AKDFDVFIA 117
Query: 155 SEAVIKQIPRLLGPGLNKAGKFPTLV--THQESLEAKVNETKAV-VKFQLKKVLCMGVAV 211
+ ++ + LG L G P T + + V E K V+F+ K + V +
Sbjct: 118 TPDMMPLV-GKLGKVLGPRGLMPNPKTGTVTDDVAKAVEELKKGTVEFRADKAGVIHVPI 176
Query: 212 GNCSMEEKQVFQNVQLSVNFLVSLLKKS--WQNVRCLHLKSTMGRPQRIY 259
G S +++++ +N++ +N +V Q ++ +++ +TMG ++
Sbjct: 177 GKVSFDDEKLAENIEALLNAIVKAKPAGAKGQYIKSVYVSTTMGPGVKVD 226
>gnl|CDD|235254 PRK04203, rpl1P, 50S ribosomal protein L1P; Reviewed.
Length = 215
Score = 124 bits (313), Expect = 5e-35
Identities = 64/212 (30%), Positives = 112/212 (52%), Gaps = 4/212 (1%)
Query: 50 EVLREAVSTICGDAKEKNRNFVETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPMMKVC 108
E + EAV +A + RNF ++++L + LK+ D +K + R V LPH +K+
Sbjct: 5 EKIEEAVKEALEEAPK--RNFTQSVDLIVNLKDIDLKKPENRIDEEVVLPHGRGKEVKIA 62
Query: 109 MLGDAQHVEQAEKIGMDY-MDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLG 167
++ + QA++ G DY + E L++L +K+ KKLA +Y F+A ++ I R LG
Sbjct: 63 VIAKGELALQAKEAGADYVITREELEELGGDKRAAKKLANEYDFFIAEADLMPLIGRYLG 122
Query: 168 PGLNKAGKFPTLVTHQESLEAKVNETKAVVKFQLKKVLCMGVAVGNCSMEEKQVFQNVQL 227
P L GK PT + ++ V K V+ + K V VG M +++ +N+
Sbjct: 123 PVLGPRGKMPTPLPPNADIKPLVERLKNTVRIRTKDQPTFHVRVGTEDMSPEELAENIDA 182
Query: 228 SVNFLVSLLKKSWQNVRCLHLKSTMGRPQRIY 259
+N + S L+K QN++ +++K+TMG ++
Sbjct: 183 VLNRIESKLEKGRQNIKSVYVKTTMGPAVKVE 214
>gnl|CDD|180071 PRK05424, rplA, 50S ribosomal protein L1; Validated.
Length = 230
Score = 41.7 bits (99), Expect = 1e-04
Identities = 61/230 (26%), Positives = 108/230 (46%), Gaps = 43/230 (18%)
Query: 42 IENSKLSSEVLREAVSTICGDAKEKNRNFVETIELQIGLKNYDPQK-DKRFSGSVKLPHI 100
++ +KL S L EA++ + A K F ET+++ + L DP+K D++ G+V LPH
Sbjct: 14 VDRTKLYS--LEEAIALVKETATAK---FDETVDVAVNL-GVDPRKADQQVRGAVVLPHG 67
Query: 101 PRPMMKVCMLGDAQHVEQAEKIGMDYMDVEALKKLNKNKKLVKKLAKKYHAFLASE---A 157
++V + + E+A+ G D + E L + K L + +A+
Sbjct: 68 TGKTVRVAVFAKGEKAEEAKAAGADIVGGEDLIEKIKGGWL------DFDVVIATPDMMG 121
Query: 158 VIKQIPRLLGP-GL--N-KAGKFPTLVTHQESLEAKVNETKA-VVKFQLKKVLCMGVAVG 212
+ ++ R+LGP GL N K G VT + V E KA V+F++ K + +G
Sbjct: 122 KVGKLGRILGPRGLMPNPKTG----TVTM--DVAKAVKEAKAGKVEFRVDKAGIIHAPIG 175
Query: 213 NCSMEEKQVFQNVQLSVNFLVSLLKKS---------WQNVRCLHLKSTMG 253
S + +++ +N++ L+ +KK+ ++V L STMG
Sbjct: 176 KVSFDAEKLKENLKA----LIDAIKKAKPATAKGTYIKSV---SLSSTMG 218
>gnl|CDD|211630 TIGR01169, rplA_bact, ribosomal protein L1, bacterial/chloroplast.
This model describes bacterial (and chloroplast)
ribosomal protein L1. The apparent mitochondrial L1 is
sufficiently diverged to be the subject of a separate
model [Protein synthesis, Ribosomal proteins: synthesis
and modification].
Length = 227
Score = 40.3 bits (95), Expect = 4e-04
Identities = 60/226 (26%), Positives = 105/226 (46%), Gaps = 35/226 (15%)
Query: 42 IENSKLSSEVLREAVSTICGDAKEKNRNFVETIELQIGLKNYDPQK-DKRFSGSVKLPHI 100
++ +KL S L EA+ + A K F ET+E+ I L DP+K D++ GSV LPH
Sbjct: 13 VDRNKLYS--LDEAIDLLKETATAK---FDETVEVAIRL-GIDPRKSDQQVRGSVVLPHG 66
Query: 101 PRPMMKVCMLGDAQHVEQAEKIGMDYMDVEALKKLNKNKKLVKKLAKKYHAFLASE---A 157
++V + + ++A+ G DY+ + L + K +KK + +A+
Sbjct: 67 TGKTVRVAVFAKGEKAKEAKAAGADYVGSDDL--IEK----IKKGWLDFDVVIATPDMMR 120
Query: 158 VIKQIPRLLGP-GLNKAGKFPTLVTHQESLEAKVNETKA-VVKFQLKKVLCMGVAVGNCS 215
V+ ++ R+LGP GL K T+ T + V K V+F+ K + +G S
Sbjct: 121 VVGKLGRILGPRGLMPNPKTGTVTT---DVAKAVKNAKKGQVEFRADKAGNIHAPIGKVS 177
Query: 216 MEEKQVFQNVQLSVNFLVSLLKKS--------WQNVRCLHLKSTMG 253
+ +++ +N++ L ++ K +N+ L STMG
Sbjct: 178 FDSEKLKENLEA---LLDAIKKAKPSGAKGQYIKNI---ALSSTMG 217
>gnl|CDD|188631 cd00439, Transaldolase, Transaldolase. Transaldolase. Enzymes
found in the non-oxidative branch of the pentose
phosphate pathway, that catalyze the reversible transfer
of a dihydroxyacetone group from fructose-6-phosphate to
erythrose-4-phosphate yielding sedoheptulose-7-phosphate
and glyceraldehyde-3-phosphate. They are members of the
class I aldolases, who are characterized by using a
Schiff-base mechanism for stabilization of the reaction
intermediates.
Length = 252
Score = 32.7 bits (74), Expect = 0.15
Identities = 14/57 (24%), Positives = 24/57 (42%)
Query: 112 DAQHVEQAEKIGMDYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGP 168
D + E+IG+D + ++ KL K+ KK AS + + L+G
Sbjct: 172 DTLMDKMLEQIGLDLRGKAGVAQVTLAYKLYKQKFKKQRVLWASFSDTLYVAPLIGC 228
>gnl|CDD|201673 pfam01229, Glyco_hydro_39, Glycosyl hydrolases family 39.
Length = 486
Score = 31.4 bits (71), Expect = 0.50
Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 7 RETSRRPLL---FQRKKLKKGTTTRFNWVGGNTKDKSEIENSKLSSEVLREAVS 57
E P + F L GT T F+ G T K E L S + R +S
Sbjct: 94 LEIGLLPFIELGFMPMGLASGTFTVFHDKGNITPPKQYEEWKDLVSLLARHYIS 147
>gnl|CDD|235544 PRK05647, purN, phosphoribosylglycinamide formyltransferase;
Reviewed.
Length = 200
Score = 28.5 bits (65), Expect = 2.6
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 13/49 (26%)
Query: 164 RLLGPGLNKA--GK-----------FPTLVTHQESLEAKVNETKAVVKF 199
R+LGP A G+ FP L TH+++LEA V V F
Sbjct: 91 RILGPTFVSAYEGRIINIHPSLLPSFPGLHTHEQALEAGVKVHGCTVHF 139
>gnl|CDD|223376 COG0299, PurN, Folate-dependent phosphoribosylglycinamide
formyltransferase PurN [Nucleotide transport and
metabolism].
Length = 200
Score = 27.9 bits (63), Expect = 4.7
Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 13/49 (26%)
Query: 164 RLLGPGLNKA-------------GKFPTLVTHQESLEAKVNETKAVVKF 199
R+LGP FP L H+++LEA V + V F
Sbjct: 90 RILGPEFLSRFEGRILNIHPSLLPAFPGLHAHEQALEAGVKVSGCTVHF 138
>gnl|CDD|201173 pfam00351, Biopterin_H, Biopterin-dependent aromatic amino acid
hydroxylase. This family includes
phenylalanine-4-hydroxylase, the phenylketonuria disease
protein.
Length = 306
Score = 28.2 bits (63), Expect = 4.8
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 62 DAKEKNRNFVETIELQIGLKNYDP 85
DAKEK RNF TI ++ Y+P
Sbjct: 276 DAKEKLRNFASTIPRPFSVR-YNP 298
>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding
protein. DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 220
Score = 27.7 bits (62), Expect = 5.0
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 7/43 (16%)
Query: 142 VKKLAKKYHAFLASEAVIKQIPR-----LLGPGLNKAGKFPTL 179
V+ L KKY F A V ++ R LLGP N AGK T+
Sbjct: 3 VENLVKKYGDFEAVRGVSFRVRRGEIFGLLGP--NGAGKTTTI 43
>gnl|CDD|183293 PRK11730, fadB, multifunctional fatty acid oxidation complex
subunit alpha; Reviewed.
Length = 715
Score = 27.9 bits (63), Expect = 5.7
Identities = 21/71 (29%), Positives = 26/71 (36%), Gaps = 29/71 (40%)
Query: 98 PHIPRPMMKVCMLGDAQHVEQAEKIGMDYMDVEALK-------KLNK------------N 138
H P PM V + +E A +G D EAL+ KL K N
Sbjct: 246 KHYPAPMTAV------KTIEAAAGLGRD----EALELEAKGFVKLAKTNVARALVGIFLN 295
Query: 139 KKLVKKLAKKY 149
+ VK AKK
Sbjct: 296 DQYVKGKAKKL 306
>gnl|CDD|177051 CHL00129, rpl1, ribosomal protein L1; Reviewed.
Length = 229
Score = 27.7 bits (62), Expect = 5.8
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 67 NRNFVETIELQIGLKNYDPQ-KDKRFSGSVKLPHIPRPMMKVCMLGDAQHVEQAEKIGMD 125
F+ET E I L N DP+ D++ +V LP +++ +L + + + +A+ G D
Sbjct: 34 TAKFIETAEAHISL-NIDPKYADQQLRTTVTLPKGTGKTIRIAVLTNEEKITEAKNAGAD 92
>gnl|CDD|188659 cd07440, RGS, Regulator of G protein signaling (RGS) domain
superfamily. The RGS domain is an essential part of the
Regulator of G-protein Signaling (RGS) protein family, a
diverse group of multifunctional proteins that regulate
cellular signaling events downstream of G-protein
coupled receptors (GPCRs). RGS proteins play critical
regulatory roles as GTPase activating proteins (GAPs) of
the heterotrimeric G-protein G-alpha-subunits. While
inactive, G-alpha-subunits bind GDP, which is released
and replaced by GTP upon agonist activation. GTP binding
leads to dissociation of the alpha-subunit and the
beta-gamma-dimer, allowing them to interact with
effectors molecules and propagate signaling cascades
associated with cellular growth, survival, migration,
and invasion. Deactivation of the G-protein signaling
controlled by the RGS domain accelerates GTPase activity
of the alpha subunit by hydrolysis of GTP to GDP, which
results in the reassociation of the alpha-subunit with
the beta-gamma-dimer and thereby inhibition of
downstream activity. As a major G-protein regulator, RGS
domain containing proteins are involved in many crucial
cellular processes such as regulation of intracellular
trafficking, glial differentiation, embryonic axis
formation, skeletal and muscle development, and cell
migration during early embryogenesis. RGS proteins are
also involved in apoptosis and cell proliferation, as
well as modulation of cardiac development. Several RGS
proteins can fine-tune immune responses, while others
play important roles in neuronal signals modulation.
Some RGS proteins are principal elements needed for
proper vision.
Length = 113
Score = 26.6 bits (59), Expect = 6.3
Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 126 YMDVEALKKLNKNKKLVKKLAKK-YHAFLASEAVIKQIP 163
++ VE KK + + +K AK+ Y +++ +A K+I
Sbjct: 26 WLAVEKFKKTTSSDEELKSKAKEIYDKYISKDA-PKEIN 63
>gnl|CDD|224662 COG1748, LYS9, Saccharopine dehydrogenase and related proteins
[Amino acid transport and metabolism].
Length = 389
Score = 27.7 bits (62), Expect = 6.8
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 125 DYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQ 161
D DV+AL L K+ LV A + +A IK
Sbjct: 55 DAADVDALVALIKDFDLVINAAPPFVDLTILKACIKT 91
>gnl|CDD|221569 pfam12420, DUF3671, Protein of unknown function. This domain
family is found in eukaryotes, and is typically between
96 and 116 amino acids in length.
Length = 106
Score = 26.5 bits (59), Expect = 7.0
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 124 MDYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQI 162
+DY+D KK K + KKY +++ I
Sbjct: 20 IDYIDKLKKDPNIDKKKFKKIIFKKYGLIFILPSLVPLI 58
>gnl|CDD|181361 PRK08295, PRK08295, RNA polymerase factor sigma-70; Validated.
Length = 208
Score = 27.2 bits (61), Expect = 7.2
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 104 MMKVCMLGDAQHVEQAEKIGMDYMDVEALKKL-NKNKKLVKKLAKKY 149
M L D + VE A + G D EAL+ L K K V+ A+ Y
Sbjct: 3 MKDYDELEDEELVELA-RSG----DKEALEYLIEKYKNFVRAKARSY 44
>gnl|CDD|180270 PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydratase; Validated.
Length = 260
Score = 27.4 bits (61), Expect = 8.3
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 91 FSGSVKLPHIPRPMMKVCML--GDAQHVEQAEKIGMDYMDVEALKKLNKNKKLVKKLAKK 148
F G+ +L I P ++ GD + E+A +IG+ VE K + + K L K+A
Sbjct: 143 FGGTQRLARIVGPGKAKELIYTGDMINAEEALRIGLVNKVVEPEKLMEEAKALANKIAAN 202
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.132 0.375
Gapped
Lambda K H
0.267 0.0731 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,589,440
Number of extensions: 1146345
Number of successful extensions: 1297
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1283
Number of HSP's successfully gapped: 34
Length of query: 259
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 164
Effective length of database: 6,723,972
Effective search space: 1102731408
Effective search space used: 1102731408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.1 bits)