RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 036232
(259 letters)
>3o58_A L10A, 60S ribosomal protein L1; ribosomal RNA and proteins,
ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3izc_A
3izs_A 1s1i_A 3o5h_A 2noq_G 3j0l_B 3j0o_B 3j0p_B 3j0q_B
3jyw_A
Length = 217
Score = 281 bits (720), Expect = 1e-96
Identities = 129/216 (59%), Positives = 168/216 (77%), Gaps = 1/216 (0%)
Query: 45 SKLSSEVLREAVSTICGDAKE-KNRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 103
SK++S +RE V + + E K RNF+ET+ELQ+GLKNYDPQ+DKRFSGS+KLP+ PRP
Sbjct: 2 SKITSSQVREHVKELLKYSNETKKRNFLETVELQVGLKNYDPQRDKRFSGSLKLPNCPRP 61
Query: 104 MMKVCMLGDAQHVEQAEKIGMDYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP 163
M +C+ GDA V++A+ G+D M V+ LKKLNKNKKL+KKL+KKY+AF+ASE +IKQ+P
Sbjct: 62 NMSICIFGDAFDVDRAKSCGVDAMSVDDLKKLNKNKKLIKKLSKKYNAFIASEVLIKQVP 121
Query: 164 RLLGPGLNKAGKFPTLVTHQESLEAKVNETKAVVKFQLKKVLCMGVAVGNCSMEEKQVFQ 223
RLLGP L+KAGKFPT V+H + L KV + ++ +KFQLKKVLC+ VAVGN MEE +
Sbjct: 122 RLLGPQLSKAGKFPTPVSHNDDLYGKVTDVRSTIKFQLKKVLCLAVAVGNVEMEEDVLVN 181
Query: 224 NVQLSVNFLVSLLKKSWQNVRCLHLKSTMGRPQRIY 259
+ +SVNF VSLLKK+WQNV L +KS+MG R+Y
Sbjct: 182 QILMSVNFFVSLLKKNWQNVGSLVVKSSMGPAFRLY 217
>3iz5_A 60S ribosomal protein L1 (L1P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_A
Length = 216
Score = 274 bits (702), Expect = 7e-94
Identities = 175/215 (81%), Positives = 202/215 (93%)
Query: 45 SKLSSEVLREAVSTICGDAKEKNRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPM 104
SKL S+ +++A++ I G+A+EK R F ET+ELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 2 SKLQSDAVKDAITQIVGEAREKKRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61
Query: 105 MKVCMLGDAQHVEQAEKIGMDYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPR 164
M+VCMLGDAQHV+QAEK+G+DYMDVE+LKK+NKNKKLVKKLAKKYHAFLASEA+IKQIPR
Sbjct: 62 MRVCMLGDAQHVDQAEKMGLDYMDVESLKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPR 121
Query: 165 LLGPGLNKAGKFPTLVTHQESLEAKVNETKAVVKFQLKKVLCMGVAVGNCSMEEKQVFQN 224
LLGPGLNKAGKFPTLV+HQESLEAKVNETKA VKFQLKKVLCMGVAVGN SM+EKQ+ QN
Sbjct: 122 LLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVLCMGVAVGNLSMDEKQIQQN 181
Query: 225 VQLSVNFLVSLLKKSWQNVRCLHLKSTMGRPQRIY 259
+Q+SVNFLVSLLKK+WQNVRCL++KSTMG+ R++
Sbjct: 182 IQMSVNFLVSLLKKNWQNVRCLYVKSTMGKRVRVF 216
>2zkr_5 60S ribosomal protein L10A; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 212
Score = 255 bits (654), Expect = 1e-86
Identities = 52/213 (24%), Positives = 98/213 (46%), Gaps = 3/213 (1%)
Query: 47 LSSEVLREAVSTICGDAKEKNRNFVETIELQIGLKNYDP-QKDKRFSGSVKLPHIPRPMM 105
++ + + AVS DA E RNF ET++L + L++ D R SV LP
Sbjct: 1 MADQEIENAVSRALEDAPE--RNFRETVDLAVNLRDLDLNDPSNRVDESVVLPAGTGQET 58
Query: 106 KVCMLGDAQHVEQAEKIGMDYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRL 165
+ + + + +AE++ D +D + L++L + K LA F+A + +++ I R
Sbjct: 59 TIVVFAEGETALRAEEVADDVLDEDELEELGGDDDAAKDLADDTDFFIAEKGLMQDIGRY 118
Query: 166 LGPGLNKAGKFPTLVTHQESLEAKVNETKAVVKFQLKKVLCMGVAVGNCSMEEKQVFQNV 225
LG L GK P + + + + K V+ + + VG M + + N+
Sbjct: 119 LGTVLGPRGKMPEPLDPDDDVVEVIERMKNTVQLRSGERRTFHTRVGAEDMSAENIADNI 178
Query: 226 QLSVNFLVSLLKKSWQNVRCLHLKSTMGRPQRI 258
+ + L + L+K N+ +++K+TMG +
Sbjct: 179 DVILRRLHADLEKGPLNIDTVYVKTTMGPAMEV 211
>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A
{Sulfolobus acidocaldarius} SCOP: e.24.1.1 PDB: 1pnu_5
1pny_5 1vor_7 1vou_7 1vow_7 1voy_7 1vp0_7 3e1b_Z 3e1d_Z
Length = 217
Score = 246 bits (630), Expect = 6e-83
Identities = 58/213 (27%), Positives = 104/213 (48%), Gaps = 3/213 (1%)
Query: 48 SSEVLREAVSTICGDAKEKNRNFVETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPMMK 106
E L EA+ RNF +++E+ + K D +K D + V LP P +
Sbjct: 4 DKESLIEALKLALSTEYNVKRNFTQSVEIILTFKGIDMKKGDLKLREIVPLPKQPSKAKR 63
Query: 107 VCMLGDAQHVEQAEKIGMDY-MDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRL 165
V ++ ++ +E A+K + E L+KL K+ VKKLA++ FL ++ + R+
Sbjct: 64 VLVVPSSEQLEYAKKASPKVVITREELQKLQGQKRPVKKLARQNEWFLINQESMALAGRI 123
Query: 166 LGPGLNKAGKFPTLVTHQESLEAKVNETKAVVKFQLKKVLCMGVAVGNCSMEEKQVFQNV 225
LGP L GKFPT + + + +N K V + K + V +G M+ + + +N
Sbjct: 124 LGPALGPRGKFPTPLPNTADISEYINRFKRSVLVKTKDQPQVQVFIGTEDMKPEDLAENA 183
Query: 226 QLSVNFLVSLLKKSWQNVRCLHLKSTMGRPQRI 258
+N + + K N+R +++K+TMG+ ++
Sbjct: 184 IAVLNAIENKAKV-ETNLRNIYVKTTMGKAVKV 215
>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein,
translation repressor, ribosome; 1.85A
{Methanocaldococcus jannaschii} SCOP: e.24.1.1 PDB:
1cjs_A 1u63_A 1dwu_A
Length = 219
Score = 241 bits (618), Expect = 5e-81
Identities = 59/213 (27%), Positives = 104/213 (48%), Gaps = 3/213 (1%)
Query: 47 LSSEVLREAVSTICGDAKEKNRNFVETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPMM 105
+ E L +AV AK RNF ++ E LK D +K + R V LPH
Sbjct: 1 MDREALLQAVKEARELAKP--RNFTQSFEFIATLKEIDMRKPENRIKTEVVLPHGRGKEA 58
Query: 106 KVCMLGDAQHVEQAEKIGMDYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRL 165
K+ ++G +QAE++G+ + E +++L KNK+ ++K+AK + F+A ++ I R
Sbjct: 59 KIAVIGTGDLAKQAEELGLTVIRKEEIEELGKNKRKLRKIAKAHDFFIAQADLMPLIGRY 118
Query: 166 LGPGLNKAGKFPTLVTHQESLEAKVNETKAVVKFQLKKVLCMGVAVGNCSMEEKQVFQNV 225
+G L GK P V +++ V K V + V VGN M ++Q+ N+
Sbjct: 119 MGVILGPRGKMPKPVPANANIKPLVERLKKTVVINTRDKPYFQVLVGNEKMTDEQIVDNI 178
Query: 226 QLSVNFLVSLLKKSWQNVRCLHLKSTMGRPQRI 258
+ +N + +K +++ ++K TMG ++
Sbjct: 179 EAVLNVVAKKYEKGLYHIKDAYVKLTMGPAVKV 211
>3qoy_A 50S ribosomal protein L1; beta-alpha-beta, structural constituent
of ribosome, rRNA BI regulation of translation,
translation, ribosomal RNA; 2.10A {Aquifex aeolicus}
Length = 242
Score = 50.8 bits (122), Expect = 7e-08
Identities = 56/231 (24%), Positives = 109/231 (47%), Gaps = 35/231 (15%)
Query: 39 KSEIENSKLSSEVLREAVSTICGDAKEKNRNFVETIELQIGLKNYDPQK-DKRFSGSVKL 97
++ +K + L EAV + + R F ET+EL + L N DP+ D+ GSV L
Sbjct: 12 SKLVDRNKRYT--LEEAVDLLKKMEEVLQRRFDETVELAMRL-NVDPRYADQMVRGSVVL 68
Query: 98 PHIPRPMMKVCMLGDAQHVEQAEKIGMDYMDVEAL-KKLNKNKKLVKKLAKKYHAFLASE 156
PH +KV + + ++ ++AE+ G DY+ + L K+ K + + +A+
Sbjct: 69 PHGLGKPIKVVVFAEGEYAKKAEEAGADYVGGDELINKILKEEWT------DFDVAIATP 122
Query: 157 AVIKQIPRL---LGP-GL--N-KAGKFPTLVTHQESLEAKVNETKA-VVKFQLKKVLCMG 208
++ ++ +L LGP GL + K G VT ++E + + K V+F++ K +
Sbjct: 123 EMMPKVAKLGRILGPRGLMPSPKTGT----VT--TNVEQAIKDAKRGRVEFKVDKAGNVH 176
Query: 209 VAVGNCSMEEKQVFQNVQLSVNFLVSLLKKS------WQNVRCLHLKSTMG 253
+ VG S E++++ N + + + ++ Q ++ + + TM
Sbjct: 177 MPVGKISFEKEKLIDN----LYAAIDAVVRAKPPGAKGQYIKNMAVSLTMS 223
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.9 bits (113), Expect = 1e-06
Identities = 33/233 (14%), Positives = 68/233 (29%), Gaps = 64/233 (27%)
Query: 37 KDKSEIENSKLSSEVLR----EAVSTICGDAKEKNRNFV------ETIELQIGLKNYDPQ 86
K + + L E V + N F+ E + + + Y Q
Sbjct: 56 MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 87 KDKRFSGSVKLP--HIPRPMMKVCMLGDAQHVEQAEKIGMDYMDVEALKKLNKNKKLV-- 142
+D+ ++ + ++ R Q + + AL +L K ++
Sbjct: 116 RDRLYNDNQVFAKYNVSRL----------QPYLKLRQ---------ALLELRPAKNVLID 156
Query: 143 ------KKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLEAKVNETKAV 196
K +A + V K + +L N + V
Sbjct: 157 GVLGSGKTW-------VALD-VCLSYKVQC--------KMDFKI-FWLNL-KNCNSPETV 198
Query: 197 VKFQLKKVLCMGVAVGNCSMEEKQVFQNVQLSVNFLVSLLK---KSWQNVRCL 246
++ K L + S + N++L ++ + + L+ KS CL
Sbjct: 199 LEMLQK--LLYQIDPNWTSRSDHS--SNIKLRIHSIQAELRRLLKSKPYENCL 247
Score = 43.7 bits (102), Expect = 4e-05
Identities = 44/285 (15%), Positives = 80/285 (28%), Gaps = 99/285 (34%)
Query: 9 TSRRPLLFQRKKLKKGTTTRF---NWVGGNTKDKSE--------IENSKLSSEVLRE--- 54
T+R + L TTT + T D+ + L EVL
Sbjct: 271 TTRFKQVTDF--LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 55 AVSTICGDAKEKNRNFVETIE-------------LQIGLKNYDPQKDKR-------FSGS 94
+S I E R+ + T + ++ L +P + ++ F S
Sbjct: 329 RLSII----AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384
Query: 95 VKLPHIPRPMMKV-CML-GDAQHVEQAEKIGMDYMDVEA-LKKLNKNKKLVKKLAKKYHA 151
+P + ++ D + DV + KL+K LV+K K+
Sbjct: 385 AHIP------TILLSLIWFD-----------VIKSDVMVVVNKLHK-YSLVEKQPKESTI 426
Query: 152 FLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLEAKVNETKAVVKFQLKKVLC----- 206
+ P + L + V + + K
Sbjct: 427 SI--------------PSI-------YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465
Query: 207 -----------MGVAVGNCSMEEK-QVFQNVQLSVNFLVSLLKKS 239
+G + N E+ +F+ V L FL ++
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD 510
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.4 bits (81), Expect = 0.016
Identities = 19/140 (13%), Positives = 42/140 (30%), Gaps = 40/140 (28%)
Query: 14 LLFQRKKLKKGTTTRFNWVGGNTKDKSEIENSKLSSEVLREAVSTICGDAKEKNRNFVET 73
++F R + R +G + I ++++ +EA+ + ++ VE
Sbjct: 1785 VVFYRGMTMQVAVPRDE-LGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEI 1843
Query: 74 IELQIGLKNY---DPQKDKRFSGSVKLPHIPRPMMKVCMLGDAQHVEQAEKIGMDYMDVE 130
+ NY + Q V GD + ++ +
Sbjct: 1844 V-------NYNVENQQ-------------Y------VA-AGDLRALDTVTNV-------- 1868
Query: 131 ALKKLNKNKKLVKKLAKKYH 150
L + K + +L K
Sbjct: 1869 -LNFIKLQKIDIIELQKSLS 1887
>2ftc_A Mitochondrial ribosomal protein L1; mitochondrial ribosome, large
ribosomal subunit, ribosomal R ribosome; 12.10A {Bos
taurus}
Length = 189
Score = 33.0 bits (76), Expect = 0.060
Identities = 30/200 (15%), Positives = 71/200 (35%), Gaps = 42/200 (21%)
Query: 74 IELQIGLKNYDPQK-DKRFSGSVKLPH-IPRPMMKVCML-GDAQHVEQAEKIGMDYMDVE 130
++L + + +K + F+ + LP+ + KV + +A V+ AE+ G +
Sbjct: 1 LDLTLDM-ALGKKKNVEPFTSVLSLPYPFASEINKVAVFTENASEVKIAEENGAAFAGGT 59
Query: 131 ALKKLNKNKKLVKKLAKKYHAF---LASEAVIKQIPRL---LGPGLNKAGKFPTL----V 180
L++K+ +A ++ ++ RL L K+P L +
Sbjct: 60 ---------SLIQKIWDDEIVADFYVAVPEIMPELNRLRKKLNK------KYPKLSRNSI 104
Query: 181 THQESLEAKVNETKA--VVKFQLKKVLCMGVAVGNCSMEEKQVFQNVQLSVNFLVSLLKK 238
+ + K +K ++ + + M Q+ N+Q +++ + +
Sbjct: 105 GR--DIPKMLELFKNGHEIKVDEERENFLQTKIATLDMSSDQIAANLQ----AVINEVCR 158
Query: 239 S-----WQNVRCLHLKSTMG 253
V L+S+
Sbjct: 159 HRPLNLGPFVVRAFLRSSTS 178
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 1.70A {Staphylococcus aureus subsp}
SCOP: c.94.1.1
Length = 295
Score = 30.8 bits (70), Expect = 0.42
Identities = 10/52 (19%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 112 DAQHVEQAEKIGMD-YMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQI 162
D +E++ + Y+++ A+ + + K K+ + YH S+ K +
Sbjct: 221 DPIFLEKSNSDAVKPYINIVAVNDKDLDNKTYAKIVELYH----SKEAQKAL 268
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.73
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 21/46 (45%)
Query: 120 EKIGMDYMDVEALKKLNKNKKLVKKLAKKYH-----AFLASEAVIK 160
EK +ALKKL + KL Y A LA +A ++
Sbjct: 18 EK--------QALKKLQASLKL-------YADDSAPA-LAIKATME 47
Score = 29.1 bits (64), Expect = 0.74
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 8/36 (22%)
Query: 84 DPQKDKRFSGSVKLPHIP--RPMMKVCMLGDAQHVE 117
+ Q K+ S+KL + P + + A +E
Sbjct: 18 EKQALKKLQASLKL-YADDSAPALAI----KAT-ME 47
>3k2d_A ABC-type metal ION transport system, periplasmic; alpha/beta
domain, immune system; 2.60A {Vibrio vulnificus}
Length = 237
Score = 29.1 bits (66), Expect = 1.2
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 7/51 (13%)
Query: 112 DAQHVEQAEKIGMDYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQI 162
D VE E Y+++ ++ N + V+ K Y +E V
Sbjct: 189 DGVFVEDKES---PYVNLIVARQDNVQNENVQNFVKAYQ----TEEVYTAA 232
>3tqw_A Methionine-binding protein; transport and binding proteins,
transport protein; HET: MSE; 2.00A {Coxiella burnetii}
Length = 240
Score = 28.7 bits (65), Expect = 1.5
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 7/51 (13%)
Query: 112 DAQHVEQAEKIGMDYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQI 162
DA E Y +V A+++ +KN +K+L H S AV+
Sbjct: 186 DALLTEGPNS---PYANVVAVREDDKNDPRLKQLVSALH----SPAVLSAA 229
>3gxa_A Outer membrane lipoprotein GNA1946; periplasmic, L-methionine
bingding, protein binding; 2.25A {Neisseria
meningitidis}
Length = 275
Score = 28.8 bits (65), Expect = 1.6
Identities = 8/37 (21%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 126 YMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQI 162
Y++ A+K +K+ + +K + + Y+ S+A
Sbjct: 216 YVNWSAVKTADKDSQWLKDVTEAYN----SDAFKAYA 248
>3ir1_A Outer membrane lipoprotein GNA1946; D-methionine cultured, protein
binding; 2.15A {Neisseria meningitidis}
Length = 245
Score = 28.7 bits (65), Expect = 1.8
Identities = 8/37 (21%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 126 YMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQI 162
Y++ A+K +K+ + +K + + Y+ S+A
Sbjct: 194 YVNWSAVKTADKDSQWLKDVTEAYN----SDAFKAYA 226
>3up9_A Putative uncharacterized protein; membrane lipoprotein,
L-methionine binding protein, NLPA LIP structural
genomics; HET: PG4 PE4; 2.35A {Actinomyces
odontolyticus}
Length = 245
Score = 28.4 bits (64), Expect = 2.4
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Query: 126 YMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQI 162
++V K +K + KL K H S+ V + I
Sbjct: 200 AVNVLVWKGDSKKVDAIAKLEKLLH----SDEVKQYI 232
>4ef1_A Pheromone COB1/lipoprotein, YAEC family; periplasmic methionine
binding protein, NLPA lipoprotein, ST genomics; 1.90A
{Enterococcus faecalis} PDB: 4ef2_A*
Length = 246
Score = 28.4 bits (64), Expect = 2.4
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 120 EKIGMDYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQI 162
EK Y ++ A++K ++N + VKKL K S+ V I
Sbjct: 195 EKESSPYANIIAVRKEDENNENVKKLVKVLR----SKEVQDWI 233
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein;
3.20A {Simian virus 40} SCOP: a.2.3.1
Length = 114
Score = 27.1 bits (60), Expect = 2.5
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 5/32 (15%)
Query: 124 MDYMDV-----EALKKLNKNKKLVKKLAKKYH 150
+ MD+ A + +K K K++H
Sbjct: 8 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFH 39
>3k9t_A Putative peptidase; structural genomics, joint center for ST
genomics, JCSG, protein structure initiative, PSI-2,
aminop hydrolase; 2.37A {Clostridium acetobutylicum}
Length = 435
Score = 28.4 bits (62), Expect = 2.7
Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 92 SGSVKLPHIPRPMMKVCMLGDAQH--VEQAEKIGMDYMDVEALKKLNKNKKLVKKL 145
G P M V + D ++ ++ A K GM++ ++ +L+K +
Sbjct: 380 GGGSDYPFDEFAMFWVLNMSDGKNSLLDIAYKSGMEFRRIKYAADALYRVELLKLV 435
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding
protein, methionine, membrane protein; 1.85A {Treponema
pallidum} SCOP: c.94.1.1
Length = 241
Score = 27.9 bits (63), Expect = 2.8
Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 7/51 (13%)
Query: 112 DAQHVEQAEKIGMDYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQI 162
D VE Y +V +K+ N+ V+ + + V +
Sbjct: 185 DGLAVEPDAS---AYANVLVVKRGNEADARVQAVLRALC----GGRVRTYL 228
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus,
hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Length = 677
Score = 28.0 bits (61), Expect = 3.8
Identities = 14/83 (16%), Positives = 31/83 (37%)
Query: 170 LNKAGKFPTLVTHQESLEAKVNETKAVVKFQLKKVLCMGVAVGNCSMEEKQVFQNVQLSV 229
N AG LVT +E + + N +A ++ + ++E Q+ ++
Sbjct: 199 SNAAGVPCDLVTGEERVTVQPNGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPARGW 258
Query: 230 NFLVSLLKKSWQNVRCLHLKSTM 252
+ +LL + V + +
Sbjct: 259 AWTRALLGLCAEEVHLCGEPAAI 281
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase
regulat protein complex; 3.10A {Simian virus 40} PDB:
2pkg_C
Length = 174
Score = 27.2 bits (60), Expect = 4.4
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 5/32 (15%)
Query: 124 MDYMDV-----EALKKLNKNKKLVKKLAKKYH 150
+ MD+ A + +K K K++H
Sbjct: 11 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFH 42
>4dok_A Similarity to chalcone-flavonone isomerase; chalcone-isomerase like
protein, chalcone-isomerase like FOL isomerase; 1.70A
{Arabidopsis thaliana}
Length = 208
Score = 26.9 bits (59), Expect = 5.7
Identities = 8/57 (14%), Positives = 19/57 (33%), Gaps = 9/57 (15%)
Query: 15 LFQRKKLKKGTTTRFNWVGGN-------TKDKSEIENSKLSSEVLREAV--STICGD 62
FQ K K + +++ + + E E K+ + + + + G
Sbjct: 132 FFQSKYFKANSVITYHFSAKDGICEIGFETEGKEEEKLKVENANVVGMMQRWYLSGS 188
>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase,
PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB:
3ac0_A*
Length = 845
Score = 27.2 bits (60), Expect = 6.2
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 143 KKLAKKYHAFLASEAVIKQIPRLLGPGLN 171
+ L + +A E++ K +LGP N
Sbjct: 76 RDLLETAGKLMAKESIAKNAAVILGPTTN 104
>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione
reductase, glutathione-dependent formaldehyde
dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo
sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A*
2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*
Length = 373
Score = 26.8 bits (60), Expect = 7.4
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
Query: 161 QIPRLLGPGLNKAGKFP--TLVTHQESLEAKVNE 192
+P+L+ + K VTH S + ++N+
Sbjct: 326 SVPKLVS--EYMSKKIKVDEFVTHNLSFD-EINK 356
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.132 0.375
Gapped
Lambda K H
0.267 0.0696 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,675,798
Number of extensions: 205235
Number of successful extensions: 582
Number of sequences better than 10.0: 1
Number of HSP's gapped: 573
Number of HSP's successfully gapped: 41
Length of query: 259
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 167
Effective length of database: 4,133,061
Effective search space: 690221187
Effective search space used: 690221187
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.4 bits)