RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 036232
(259 letters)
>d1mzpa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 217
Score = 147 bits (371), Expect = 2e-44
Identities = 58/213 (27%), Positives = 104/213 (48%), Gaps = 3/213 (1%)
Query: 48 SSEVLREAVSTICGDAKEKNRNFVETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPMMK 106
E L EA+ RNF +++E+ + K D +K D + V LP P +
Sbjct: 4 DKESLIEALKLALSTEYNVKRNFTQSVEIILTFKGIDMKKGDLKLREIVPLPKQPSKAKR 63
Query: 107 VCMLGDAQHVEQAEKIGMD-YMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRL 165
V ++ ++ +E A+K + E L+KL K+ VKKLA++ FL ++ + R+
Sbjct: 64 VLVVPSSEQLEYAKKASPKVVITREELQKLQGQKRPVKKLARQNEWFLINQESMALAGRI 123
Query: 166 LGPGLNKAGKFPTLVTHQESLEAKVNETKAVVKFQLKKVLCMGVAVGNCSMEEKQVFQNV 225
LGP L GKFPT + + + +N K V + K + V +G M+ + + +N
Sbjct: 124 LGPALGPRGKFPTPLPNTADISEYINRFKRSVLVKTKDQPQVQVFIGTEDMKPEDLAENA 183
Query: 226 QLSVNFLVSLLKKSWQNVRCLHLKSTMGRPQRI 258
+N + + K N+R +++K+TMG+ ++
Sbjct: 184 IAVLNAIENKAKV-ETNLRNIYVKTTMGKAVKV 215
>d1i2aa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Methanococcus
jannaschii [TaxId: 2190]}
Length = 212
Score = 141 bits (357), Expect = 2e-42
Identities = 59/213 (27%), Positives = 104/213 (48%), Gaps = 3/213 (1%)
Query: 47 LSSEVLREAVSTICGDAKEKNRNFVETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPMM 105
+ E L +AV AK RNF ++ E LK D +K + R V LPH
Sbjct: 1 MDREALLQAVKEARELAKP--RNFTQSFEFIATLKEIDMRKPENRIKTEVVLPHGRGKEA 58
Query: 106 KVCMLGDAQHVEQAEKIGMDYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRL 165
K+ ++G +QAE++G+ + E +++L KNK+ ++K+AK + F+A ++ I R
Sbjct: 59 KIAVIGTGDLAKQAEELGLTVIRKEEIEELGKNKRKLRKIAKAHDFFIAQADLMPLIGRY 118
Query: 166 LGPGLNKAGKFPTLVTHQESLEAKVNETKAVVKFQLKKVLCMGVAVGNCSMEEKQVFQNV 225
+G L GK P V +++ V K V + V VGN M ++Q+ N+
Sbjct: 119 MGVILGPRGKMPKPVPANANIKPLVERLKKTVVINTRDKPYFQVLVGNEKMTDEQIVDNI 178
Query: 226 QLSVNFLVSLLKKSWQNVRCLHLKSTMGRPQRI 258
+ +N + +K +++ ++K TMG ++
Sbjct: 179 EAVLNVVAKKYEKGLYHIKDAYVKLTMGPAVKV 211
>d1ad2a_ e.24.1.1 (A:) Ribosomal protein L1 {Thermus thermophilus
[TaxId: 274]}
Length = 224
Score = 101 bits (252), Expect = 1e-26
Identities = 42/198 (21%), Positives = 85/198 (42%), Gaps = 11/198 (5%)
Query: 66 KNRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPMMKVCMLGDAQHVEQAEKIGMD 125
F ET+E+ L + D+ G+V LPH ++V + + +++AE+ G D
Sbjct: 29 ATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGAD 88
Query: 126 YMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLV--THQ 183
Y+ E + + + + A +A+ V+ + LG L G P T
Sbjct: 89 YVGGEEIIQKILDGW------MDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVG 142
Query: 184 ESLEAKVNETKAV-VKFQLKKVLCMGVAVGNCSMEEKQVFQNVQLSVNFLVSLLKKSWQN 242
++ + E KA ++F+ K + VG +++ N++ + L + + +
Sbjct: 143 FNIGEIIREIKAGRIEFRNDKTGAIHAPVGKACFPPEKLADNIRAFIRALEAHKPEGAKG 202
Query: 243 --VRCLHLKSTMGRPQRI 258
+R +++ +TMG RI
Sbjct: 203 TFLRSVYVTTTMGPSVRI 220
>d1p99a_ c.94.1.1 (A:) Putative lipoprotein (NlpA family)
{Staphylococcus aureus [TaxId: 1280]}
Length = 255
Score = 30.1 bits (67), Expect = 0.20
Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 8/96 (8%)
Query: 71 VETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPMMKVCMLGDAQHVEQAEKIGMD----Y 126
+ + + + D Q+ R V + I + EK D Y
Sbjct: 138 ITSNPKHLKITAVDAQQTARALSDVDIAVINNGVATKAGKDPKNDPIFLEKSNSDAVKPY 197
Query: 127 MDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQI 162
+++ A+ + + K K+ + YH S+ K +
Sbjct: 198 INIVAVNDKDLDNKTYAKIVELYH----SKEAQKAL 229
>d1xs5a_ c.94.1.1 (A:) Putative lipoprotein (NlpA family) {Treponema
pallidum [TaxId: 160]}
Length = 240
Score = 30.1 bits (67), Expect = 0.23
Identities = 13/92 (14%), Positives = 27/92 (29%), Gaps = 4/92 (4%)
Query: 71 VETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPMMKVCMLGDAQHVEQAEKIGMDYMDVE 130
V+ + L+ + R V I + L + E Y +V
Sbjct: 141 VQQNVRNVVLQEVESALLPRVFDQVDGAVINGNYAIMAGLSARRDGLAVEPDASAYANVL 200
Query: 131 ALKKLNKNKKLVKKLAKKYHAFLASEAVIKQI 162
+K+ N+ V+ + + V +
Sbjct: 201 VVKRGNEADARVQAVLRALC----GGRVRTYL 228
>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 U [TaxId: 9606]}
Length = 148
Score = 25.8 bits (56), Expect = 3.4
Identities = 11/69 (15%), Positives = 29/69 (42%)
Query: 82 NYDPQKDKRFSGSVKLPHIPRPMMKVCMLGDAQHVEQAEKIGMDYMDVEALKKLNKNKKL 141
N DP + + P + + A V + + + +++EA + L K++ L
Sbjct: 80 NVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESL 139
Query: 142 VKKLAKKYH 150
+ + + ++
Sbjct: 140 YRTILRLFN 148
>d1wx0a1 c.1.10.1 (A:1-211) Decameric fructose-6-phosphate
aldolase/transaldolase {Thermus thermophilus [TaxId:
274]}
Length = 211
Score = 25.9 bits (56), Expect = 4.8
Identities = 12/78 (15%), Positives = 28/78 (35%), Gaps = 2/78 (2%)
Query: 63 AKEKNRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPMMKVCMLGDAQHVEQAEKI 122
A ++V ++ ++D + R + + + +HV +A +
Sbjct: 127 AARAGASYVSPFLGRVDDISWDGGELLREIVEMIQVQDLPVKVIAASIRHPRHVTEAALL 186
Query: 123 GMDYMDV--EALKKLNKN 138
G D + K+L K+
Sbjct: 187 GADIATMPHAVFKQLLKH 204
>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment
{Human (Homo sapiens) [TaxId: 9606]}
Length = 579
Score = 25.9 bits (56), Expect = 5.7
Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Query: 198 KFQLKKVLCMGVAVGNCSMEEKQVFQNVQLSVNFLVSLLKKSWQNVRCLHLKSTMGR 254
+LKK++ + + N + + + ++VN V + +R L ++ TMG
Sbjct: 59 NLELKKLVYL--YLMNYAKSQPDM---AIMAVNSFVKDCEDPNPLIRALAVR-TMGC 109
>d1i2ta_ a.144.1.1 (A:) hyperplastic discs protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 61
Score = 23.9 bits (52), Expect = 6.6
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 179 LVTHQESLEAKVNETKAVVK 198
L+ ++SL A+V+E ++
Sbjct: 39 LLASEDSLRARVDEAMELII 58
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.132 0.375
Gapped
Lambda K H
0.267 0.0500 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 896,291
Number of extensions: 39663
Number of successful extensions: 142
Number of sequences better than 10.0: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 14
Length of query: 259
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 176
Effective length of database: 1,268,006
Effective search space: 223169056
Effective search space used: 223169056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.4 bits)