BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036236
(557 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 17/120 (14%)
Query: 182 EKAVDIFRSL---REKRFVLLLDDIWERVDLTKVGVPLPGPQNTTSKVVFTTRSIDVCGS 238
E+A D R L + R +L+LDD+W+ L ++ +++ TTR V S
Sbjct: 221 EEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF--------DSQCQILLTTRDKSVTDS 272
Query: 239 -MESHRKFPV-ACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTIG 296
M PV + L +E E+ V + D+ E A ++ +EC G PL + IG
Sbjct: 273 VMGPKYVVPVESSLGKEKGLEILSLFVNMKKA----DLPEQAHSIIKECKGSPLVVSLIG 328
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 17/120 (14%)
Query: 182 EKAVDIFRSL---REKRFVLLLDDIWERVDLTKVGVPLPGPQNTTSKVVFTTRSIDVCGS 238
E+A D R L + R +L+LDD+W+ L ++ +++ TTR V S
Sbjct: 227 EEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF--------DSQCQILLTTRDKSVTDS 278
Query: 239 -MESHRKFPV-ACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTIG 296
M PV + L +E E+ V + D+ E A ++ +EC G PL + IG
Sbjct: 279 VMGPKYVVPVESSLGKEKGLEILSLFVNMKKA----DLPEQAHSIIKECKGSPLVVSLIG 334
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 437 AGAGLKEAPAVKGWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNQ 484
+G LK A+ G ++++ L L QI ++ + +L L+LD NQ
Sbjct: 99 SGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQ 146
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 437 AGAGLKEAPAVKGWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNQ 484
+G LK A+ G ++++ L L QI ++ + +L L+LD NQ
Sbjct: 93 SGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQ 140
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 17/120 (14%)
Query: 182 EKAVDIFRSL---REKRFVLLLDDIWERVDLTKVGVPLPGPQNTTSKVVFTTRSIDVCGS 238
E+A D R L + R +L+LDD+W+ L + +++ TTR V S
Sbjct: 221 EEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF--------DNQCQILLTTRDKSVTDS 272
Query: 239 -MESHRKFPV-ACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTIG 296
M PV + L E E+ V + D+ A ++ +EC G PL + IG
Sbjct: 273 VMGPKHVVPVESGLGREKGLEILSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSLIG 328
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 446 AVKGWENVRRLSLMQNQIETLSEV---PTCPHLLTLFLDFNQELEMIADGFFQFMPSLKV 502
A G+ ++ ++ + QN + + E P L + ++ L I FQ +P+L+
Sbjct: 49 AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108
Query: 503 LKISNCGNIFQLPVGMSKLGSLE--LLDI 529
L ISN G I LP + K+ SL+ LLDI
Sbjct: 109 LLISNTG-IKHLP-DVHKIHSLQKVLLDI 135
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 446 AVKGWENVRRLSLMQNQIETLSEV---PTCPHLLTLFLDFNQELEMIADGFFQFMPSLKV 502
A G+ ++ ++ + QN + + E P L + ++ L I FQ +P+L+
Sbjct: 49 AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108
Query: 503 LKISNCGNIFQLPVGMSKLGSLE--LLDI 529
L ISN G I LP + K+ SL+ LLDI
Sbjct: 109 LLISNTG-IKHLP-DVHKIHSLQKVLLDI 135
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 15/98 (15%)
Query: 440 GLKEAPA-VKGWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNQELEMIADGFFQFMP 498
G++ PA + +N++ L + + + L P HL L +EL++ + P
Sbjct: 194 GIRSLPASIANLQNLKSLKIRNSPLSALG--PAIHHLPKL-----EELDLRGCTALRNYP 246
Query: 499 S-------LKVLKISNCGNIFQLPVGMSKLGSLELLDI 529
LK L + +C N+ LP+ + +L LE LD+
Sbjct: 247 PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,506,921
Number of Sequences: 62578
Number of extensions: 608404
Number of successful extensions: 1415
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1407
Number of HSP's gapped (non-prelim): 13
length of query: 557
length of database: 14,973,337
effective HSP length: 104
effective length of query: 453
effective length of database: 8,465,225
effective search space: 3834746925
effective search space used: 3834746925
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)