Query 036236
Match_columns 557
No_of_seqs 585 out of 3325
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 10:46:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036236.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036236hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1E-84 2.2E-89 704.3 42.9 548 4-554 54-627 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.4E-50 3E-55 461.8 40.9 431 90-554 184-690 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 2.1E-46 4.5E-51 368.0 17.0 282 95-379 1-285 (287)
4 PRK04841 transcriptional regul 99.6 8.9E-14 1.9E-18 158.5 24.2 295 87-423 11-332 (903)
5 PRK00411 cdc6 cell division co 99.5 1.1E-11 2.3E-16 127.4 25.8 297 89-403 29-357 (394)
6 COG2909 MalT ATP-dependent tra 99.4 1.1E-11 2.3E-16 129.7 21.7 294 89-424 18-339 (894)
7 TIGR02928 orc1/cdc6 family rep 99.4 1.5E-10 3.2E-15 117.7 26.3 297 90-404 15-350 (365)
8 PF01637 Arch_ATPase: Archaeal 99.4 2.7E-12 5.8E-17 121.9 11.2 196 92-294 1-233 (234)
9 TIGR03015 pepcterm_ATPase puta 99.4 1.9E-10 4.2E-15 111.6 23.7 182 110-299 41-242 (269)
10 COG3899 Predicted ATPase [Gene 99.3 8.4E-11 1.8E-15 129.7 17.3 309 91-421 1-384 (849)
11 PRK00080 ruvB Holliday junctio 99.3 4.5E-11 9.6E-16 119.0 13.7 274 90-404 25-310 (328)
12 KOG0617 Ras suppressor protein 99.3 1E-12 2.2E-17 111.1 1.5 108 447-556 75-184 (264)
13 TIGR00635 ruvB Holliday juncti 99.3 1.4E-10 3.1E-15 114.6 16.9 274 90-404 4-289 (305)
14 PF14580 LRR_9: Leucine-rich r 99.2 3.6E-11 7.7E-16 106.3 5.9 121 434-556 24-151 (175)
15 PF05729 NACHT: NACHT domain 99.2 3.2E-10 7E-15 101.3 11.6 143 113-264 1-164 (166)
16 KOG0472 Leucine-rich repeat pr 99.1 3.4E-12 7.3E-17 121.9 -1.9 109 445-556 200-310 (565)
17 COG2256 MGS1 ATPase related to 99.1 6.7E-09 1.5E-13 100.3 18.5 218 90-342 30-265 (436)
18 KOG0617 Ras suppressor protein 99.1 1.8E-11 3.9E-16 103.7 0.5 108 445-555 50-160 (264)
19 PTZ00112 origin recognition co 99.1 2.2E-08 4.9E-13 106.1 22.4 208 89-299 754-986 (1164)
20 PRK06893 DNA replication initi 99.0 2.2E-09 4.8E-14 100.9 12.1 155 110-297 37-205 (229)
21 PF14580 LRR_9: Leucine-rich r 99.0 3.6E-10 7.9E-15 99.9 3.4 109 443-555 11-123 (175)
22 KOG0444 Cytoskeletal regulator 98.9 2.8E-10 6E-15 114.6 2.4 103 446-554 98-206 (1255)
23 TIGR03420 DnaA_homol_Hda DnaA 98.9 7.2E-09 1.6E-13 97.7 11.2 172 91-297 16-203 (226)
24 PRK13342 recombination factor 98.9 8.4E-08 1.8E-12 98.5 18.8 176 90-297 12-198 (413)
25 PRK07003 DNA polymerase III su 98.9 5.3E-08 1.2E-12 102.8 17.1 192 90-295 16-221 (830)
26 KOG0444 Cytoskeletal regulator 98.9 5E-10 1.1E-14 112.8 1.8 118 437-556 111-256 (1255)
27 PRK04195 replication factor C 98.8 1.7E-07 3.7E-12 98.2 18.2 181 90-299 14-206 (482)
28 COG1474 CDC6 Cdc6-related prot 98.8 5.1E-07 1.1E-11 90.1 19.6 202 90-295 17-238 (366)
29 PLN00113 leucine-rich repeat r 98.8 7.3E-09 1.6E-13 119.2 7.2 107 448-555 137-246 (968)
30 PF13855 LRR_8: Leucine rich r 98.8 4.9E-09 1.1E-13 76.1 3.7 60 473-534 1-61 (61)
31 PRK08727 hypothetical protein; 98.8 8.6E-08 1.9E-12 90.3 12.6 169 90-292 19-201 (233)
32 KOG0472 Leucine-rich repeat pr 98.8 9.8E-10 2.1E-14 105.3 -0.6 107 447-556 431-539 (565)
33 KOG2028 ATPase related to the 98.8 2.1E-07 4.6E-12 88.5 14.8 173 91-290 139-331 (554)
34 PRK14960 DNA polymerase III su 98.8 3.1E-07 6.7E-12 96.1 16.9 192 90-293 15-217 (702)
35 PRK05564 DNA polymerase III su 98.8 3.2E-07 6.9E-12 90.8 16.6 178 90-294 4-189 (313)
36 PRK14961 DNA polymerase III su 98.7 3.4E-07 7.4E-12 92.3 16.6 191 90-293 16-218 (363)
37 PLN00113 leucine-rich repeat r 98.7 1.6E-08 3.5E-13 116.4 7.9 109 446-556 159-271 (968)
38 PRK12323 DNA polymerase III su 98.7 1.8E-07 3.9E-12 97.5 14.1 196 90-295 16-225 (700)
39 PRK12402 replication factor C 98.7 2.5E-07 5.3E-12 93.0 14.6 194 90-294 15-225 (337)
40 PRK08084 DNA replication initi 98.7 2.4E-07 5.3E-12 87.4 13.1 172 91-296 24-210 (235)
41 PF05496 RuvB_N: Holliday junc 98.7 2.3E-07 4.9E-12 84.0 12.0 176 90-299 24-225 (233)
42 PF13173 AAA_14: AAA domain 98.7 3.4E-08 7.4E-13 83.9 6.1 119 112-254 2-126 (128)
43 PRK14949 DNA polymerase III su 98.7 2.7E-07 5.8E-12 99.5 14.2 194 90-295 16-220 (944)
44 PF13191 AAA_16: AAA ATPase do 98.7 5.9E-08 1.3E-12 88.4 8.0 46 91-136 1-48 (185)
45 COG3903 Predicted ATPase [Gene 98.7 3.7E-08 8.1E-13 95.9 6.3 293 111-425 13-316 (414)
46 PTZ00202 tuzin; Provisional 98.7 2.3E-06 5.1E-11 84.6 18.7 163 86-263 258-434 (550)
47 PRK14963 DNA polymerase III su 98.6 6.9E-07 1.5E-11 93.1 15.9 192 90-292 14-214 (504)
48 cd00009 AAA The AAA+ (ATPases 98.6 2.1E-07 4.5E-12 81.0 10.4 123 93-233 1-130 (151)
49 PRK07471 DNA polymerase III su 98.6 1.4E-06 3E-11 87.2 17.4 197 90-295 19-238 (365)
50 PRK00440 rfc replication facto 98.6 7.9E-07 1.7E-11 88.6 15.8 179 90-293 17-201 (319)
51 PF13401 AAA_22: AAA domain; P 98.6 6.8E-08 1.5E-12 82.5 7.1 117 111-232 3-125 (131)
52 KOG4194 Membrane glycoprotein 98.6 2.2E-08 4.8E-13 100.6 4.3 116 439-556 112-232 (873)
53 PF14516 AAA_35: AAA-like doma 98.6 1.1E-05 2.3E-10 80.3 23.4 202 89-302 10-246 (331)
54 KOG4658 Apoptotic ATPase [Sign 98.6 1.7E-08 3.7E-13 111.4 3.7 113 440-554 534-651 (889)
55 PRK14956 DNA polymerase III su 98.6 2.8E-07 6E-12 93.7 11.8 191 90-292 18-219 (484)
56 PRK09112 DNA polymerase III su 98.6 5.9E-07 1.3E-11 89.3 13.9 197 90-296 23-241 (351)
57 PRK06645 DNA polymerase III su 98.6 1.2E-06 2.5E-11 91.0 16.5 194 90-292 21-226 (507)
58 PRK07940 DNA polymerase III su 98.6 1.5E-06 3.3E-11 87.6 16.5 187 90-295 5-213 (394)
59 TIGR02397 dnaX_nterm DNA polym 98.6 1.7E-06 3.7E-11 87.6 16.9 183 90-296 14-219 (355)
60 PLN03025 replication factor C 98.6 5.5E-07 1.2E-11 89.3 13.0 180 90-292 13-197 (319)
61 cd01128 rho_factor Transcripti 98.6 9E-08 1.9E-12 90.2 6.4 98 103-204 7-113 (249)
62 PRK14957 DNA polymerase III su 98.6 1.2E-06 2.6E-11 91.5 15.1 182 90-295 16-221 (546)
63 PRK08691 DNA polymerase III su 98.6 9.6E-07 2.1E-11 93.3 14.4 192 90-295 16-220 (709)
64 PRK09087 hypothetical protein; 98.6 6.3E-07 1.4E-11 83.7 11.6 144 111-296 43-196 (226)
65 PRK14958 DNA polymerase III su 98.6 1.3E-06 2.8E-11 91.3 15.0 181 90-294 16-219 (509)
66 KOG4194 Membrane glycoprotein 98.5 3.3E-08 7.3E-13 99.3 2.8 106 449-556 267-376 (873)
67 PRK08903 DnaA regulatory inact 98.5 5E-07 1.1E-11 85.2 10.7 172 91-299 19-203 (227)
68 PRK14951 DNA polymerase III su 98.5 1.4E-06 3E-11 92.3 14.9 198 90-295 16-225 (618)
69 TIGR00678 holB DNA polymerase 98.5 2.7E-06 5.9E-11 77.5 15.1 161 101-291 3-187 (188)
70 TIGR02903 spore_lon_C ATP-depe 98.5 3E-06 6.4E-11 91.0 17.5 202 90-298 154-398 (615)
71 KOG1259 Nischarin, modulator o 98.5 1.8E-08 3.8E-13 93.2 0.3 101 450-554 306-408 (490)
72 PLN03150 hypothetical protein; 98.5 1.7E-07 3.6E-12 101.3 7.5 101 452-554 419-524 (623)
73 KOG1259 Nischarin, modulator o 98.5 2.8E-08 6E-13 92.0 1.3 105 447-556 280-385 (490)
74 PRK14962 DNA polymerase III su 98.5 2.3E-06 4.9E-11 88.5 15.5 196 90-298 14-222 (472)
75 PF12799 LRR_4: Leucine Rich r 98.5 9.3E-08 2E-12 63.6 3.3 41 498-539 1-41 (44)
76 PRK14964 DNA polymerase III su 98.5 2.5E-06 5.4E-11 87.9 15.4 190 90-292 13-214 (491)
77 PRK15370 E3 ubiquitin-protein 98.5 3E-07 6.6E-12 100.0 9.2 95 451-555 220-314 (754)
78 KOG0618 Serine/threonine phosp 98.5 6.8E-09 1.5E-13 109.5 -3.6 109 443-556 375-487 (1081)
79 PRK14955 DNA polymerase III su 98.5 1E-06 2.2E-11 90.0 12.2 199 90-294 16-227 (397)
80 PLN03210 Resistant to P. syrin 98.5 2E-07 4.3E-12 108.1 7.8 116 438-556 598-715 (1153)
81 PRK05642 DNA replication initi 98.5 1.2E-06 2.7E-11 82.4 11.8 152 112-296 45-209 (234)
82 PRK05896 DNA polymerase III su 98.5 2E-06 4.3E-11 90.0 14.0 194 90-296 16-222 (605)
83 PRK07994 DNA polymerase III su 98.5 1.6E-06 3.5E-11 92.0 13.6 193 90-295 16-220 (647)
84 PRK14969 DNA polymerase III su 98.5 2.7E-06 5.9E-11 89.5 15.2 190 90-292 16-217 (527)
85 PRK13341 recombination factor 98.5 4.4E-06 9.4E-11 90.6 16.9 167 90-292 28-214 (725)
86 PRK15387 E3 ubiquitin-protein 98.5 2E-07 4.3E-12 100.9 6.4 94 452-556 363-456 (788)
87 PRK14959 DNA polymerase III su 98.4 7.2E-06 1.6E-10 86.4 16.9 197 90-299 16-225 (624)
88 PRK14970 DNA polymerase III su 98.4 7E-06 1.5E-10 83.4 15.8 180 90-292 17-206 (367)
89 PRK15387 E3 ubiquitin-protein 98.4 6.6E-07 1.4E-11 97.0 8.6 88 439-539 232-319 (788)
90 TIGR01242 26Sp45 26S proteasom 98.4 2.6E-06 5.6E-11 86.2 12.3 172 90-289 122-328 (364)
91 PRK09376 rho transcription ter 98.4 3.9E-07 8.4E-12 89.6 5.8 100 101-204 158-266 (416)
92 PF00308 Bac_DnaA: Bacterial d 98.4 1.5E-06 3.3E-11 80.9 9.5 182 91-295 10-208 (219)
93 PRK09111 DNA polymerase III su 98.4 5.9E-06 1.3E-10 87.8 14.9 197 90-296 24-234 (598)
94 PRK07764 DNA polymerase III su 98.4 6.6E-06 1.4E-10 90.4 15.3 190 90-292 15-218 (824)
95 PRK14952 DNA polymerase III su 98.4 9.6E-06 2.1E-10 85.7 15.4 194 90-295 13-220 (584)
96 PRK14954 DNA polymerase III su 98.3 1.3E-05 2.9E-10 85.2 16.3 197 90-292 16-225 (620)
97 KOG0618 Serine/threonine phosp 98.3 1.4E-07 3E-12 99.9 1.4 102 451-555 45-147 (1081)
98 PLN03150 hypothetical protein; 98.3 5.4E-07 1.2E-11 97.3 5.7 81 474-556 419-501 (623)
99 PF13855 LRR_8: Leucine rich r 98.3 6.1E-07 1.3E-11 65.0 4.1 57 451-508 1-59 (61)
100 PRK14087 dnaA chromosomal repl 98.3 3.6E-06 7.7E-11 86.9 11.3 168 112-297 141-321 (450)
101 KOG4579 Leucine-rich repeat (L 98.3 1.3E-07 2.8E-12 77.6 0.5 89 449-540 51-141 (177)
102 PRK11331 5-methylcytosine-spec 98.3 4.8E-06 1E-10 83.9 11.6 69 90-162 175-243 (459)
103 PRK08451 DNA polymerase III su 98.3 1.8E-05 3.9E-10 82.4 16.2 194 90-295 14-218 (535)
104 PRK14950 DNA polymerase III su 98.3 5.1E-06 1.1E-10 89.0 12.5 195 90-296 16-222 (585)
105 PRK07133 DNA polymerase III su 98.3 1.4E-05 3.1E-10 85.5 15.5 185 90-292 18-216 (725)
106 PRK15370 E3 ubiquitin-protein 98.3 1.3E-06 2.9E-11 95.1 8.0 94 452-555 242-335 (754)
107 PRK14971 DNA polymerase III su 98.3 1.3E-05 2.8E-10 85.7 15.4 180 90-293 17-220 (614)
108 PRK14953 DNA polymerase III su 98.3 2E-05 4.4E-10 82.0 16.3 179 90-296 16-221 (486)
109 TIGR03345 VI_ClpV1 type VI sec 98.3 1E-05 2.2E-10 90.0 14.4 180 90-288 187-389 (852)
110 KOG0532 Leucine-rich repeat (L 98.3 1.1E-07 2.4E-12 95.5 -0.9 97 452-552 144-241 (722)
111 PRK03992 proteasome-activating 98.3 2E-05 4.4E-10 80.1 15.3 171 90-288 131-336 (389)
112 KOG4237 Extracellular matrix p 98.3 3.8E-07 8.3E-12 87.8 2.4 97 453-550 69-169 (498)
113 TIGR00767 rho transcription te 98.3 4.3E-06 9.3E-11 82.8 9.5 93 110-204 166-265 (415)
114 PRK06305 DNA polymerase III su 98.2 2.9E-05 6.3E-10 80.3 15.9 189 90-292 17-219 (451)
115 PRK14088 dnaA chromosomal repl 98.2 1.5E-05 3.2E-10 82.3 13.7 159 112-293 130-303 (440)
116 KOG0989 Replication factor C, 98.2 5.9E-06 1.3E-10 77.4 9.6 181 90-289 36-224 (346)
117 PF05621 TniB: Bacterial TniB 98.2 4.8E-05 1E-09 72.5 15.9 202 90-294 34-260 (302)
118 TIGR02881 spore_V_K stage V sp 98.2 1.3E-05 2.8E-10 77.1 12.5 154 91-266 7-194 (261)
119 TIGR02880 cbbX_cfxQ probable R 98.2 2.8E-05 6.1E-10 75.5 14.3 155 91-265 23-210 (284)
120 KOG0532 Leucine-rich repeat (L 98.2 1.3E-07 2.8E-12 95.1 -2.1 107 446-556 116-222 (722)
121 KOG2227 Pre-initiation complex 98.2 0.0001 2.2E-09 73.2 17.8 176 89-267 149-342 (529)
122 PRK06647 DNA polymerase III su 98.2 4.2E-05 9E-10 81.0 16.3 194 90-295 16-220 (563)
123 PRK06620 hypothetical protein; 98.2 1.5E-05 3.1E-10 73.9 11.2 134 113-292 45-186 (214)
124 CHL00181 cbbX CbbX; Provisiona 98.2 3.9E-05 8.4E-10 74.4 14.4 156 91-266 24-212 (287)
125 PRK05563 DNA polymerase III su 98.2 5.7E-05 1.2E-09 80.2 16.9 190 90-292 16-217 (559)
126 PRK14948 DNA polymerase III su 98.2 4.6E-05 1E-09 81.6 16.2 196 90-296 16-223 (620)
127 COG2255 RuvB Holliday junction 98.2 0.00017 3.8E-09 67.1 17.5 171 90-298 26-226 (332)
128 TIGR00362 DnaA chromosomal rep 98.2 3.9E-05 8.5E-10 78.9 15.1 159 112-293 136-308 (405)
129 KOG2543 Origin recognition com 98.2 1.5E-05 3.3E-10 76.9 10.6 168 89-262 5-192 (438)
130 PRK14965 DNA polymerase III su 98.1 3.6E-05 7.7E-10 82.2 14.4 193 90-295 16-221 (576)
131 PRK00149 dnaA chromosomal repl 98.1 4.2E-05 9.2E-10 79.7 14.1 159 112-293 148-320 (450)
132 TIGR02639 ClpA ATP-dependent C 98.1 2.2E-05 4.8E-10 86.6 12.5 155 90-263 182-358 (731)
133 COG4886 Leucine-rich repeat (L 98.1 2.5E-06 5.3E-11 87.8 4.4 104 449-555 114-219 (394)
134 KOG4579 Leucine-rich repeat (L 98.1 5.2E-07 1.1E-11 74.1 -0.5 101 453-555 29-133 (177)
135 PHA02544 44 clamp loader, smal 98.1 2.1E-05 4.6E-10 78.2 10.7 146 90-261 21-171 (316)
136 PF05673 DUF815: Protein of un 98.1 0.00011 2.3E-09 67.8 14.3 48 89-136 26-76 (249)
137 PRK12422 chromosomal replicati 98.1 3.1E-05 6.6E-10 79.8 11.7 153 112-289 141-307 (445)
138 PRK07399 DNA polymerase III su 98.1 0.00019 4.1E-09 70.5 16.7 197 90-295 4-221 (314)
139 PRK14086 dnaA chromosomal repl 98.1 0.00011 2.3E-09 77.4 15.5 158 113-292 315-485 (617)
140 PTZ00361 26 proteosome regulat 98.1 5.1E-05 1.1E-09 77.4 12.8 170 91-288 184-388 (438)
141 TIGR03689 pup_AAA proteasome A 98.0 0.0001 2.3E-09 76.4 14.8 160 90-265 182-380 (512)
142 PRK05707 DNA polymerase III su 98.0 0.0002 4.3E-09 70.8 16.1 169 110-295 20-203 (328)
143 CHL00095 clpC Clp protease ATP 98.0 2.8E-05 6.2E-10 86.8 11.1 155 90-262 179-353 (821)
144 PTZ00454 26S protease regulato 98.0 0.00016 3.5E-09 73.3 15.4 172 90-289 145-351 (398)
145 KOG4237 Extracellular matrix p 98.0 2.2E-06 4.8E-11 82.7 1.0 93 461-556 56-151 (498)
146 COG3267 ExeA Type II secretory 98.0 0.00029 6.2E-09 64.8 14.4 183 110-297 49-247 (269)
147 COG0593 DnaA ATPase involved i 97.9 0.00014 3.1E-09 72.6 13.3 152 111-286 112-277 (408)
148 KOG1644 U2-associated snRNP A' 97.9 1.2E-05 2.6E-10 70.8 4.6 103 451-555 42-150 (233)
149 PRK08769 DNA polymerase III su 97.9 0.0005 1.1E-08 67.4 16.2 181 96-296 10-209 (319)
150 TIGR01241 FtsH_fam ATP-depende 97.9 0.00044 9.5E-09 73.0 17.0 179 90-295 55-267 (495)
151 PRK11034 clpA ATP-dependent Cl 97.9 4.3E-05 9.3E-10 83.4 9.6 156 90-263 186-362 (758)
152 KOG0531 Protein phosphatase 1, 97.9 6.7E-06 1.4E-10 84.9 3.2 104 447-555 91-196 (414)
153 COG1222 RPT1 ATP-dependent 26S 97.9 0.00016 3.4E-09 69.6 12.0 180 92-299 153-371 (406)
154 PRK06871 DNA polymerase III su 97.9 0.0006 1.3E-08 66.9 16.5 177 98-292 10-200 (325)
155 TIGR03346 chaperone_ClpB ATP-d 97.9 8.9E-05 1.9E-09 83.2 12.2 154 90-263 173-349 (852)
156 PRK10865 protein disaggregatio 97.9 8.9E-05 1.9E-09 82.9 12.0 154 90-263 178-354 (857)
157 PF12799 LRR_4: Leucine Rich r 97.9 1.6E-05 3.4E-10 52.9 3.5 40 473-515 1-40 (44)
158 TIGR00602 rad24 checkpoint pro 97.8 7E-05 1.5E-09 79.8 9.8 47 90-136 84-134 (637)
159 COG4886 Leucine-rich repeat (L 97.8 8.4E-06 1.8E-10 83.8 2.7 97 452-551 141-238 (394)
160 PRK08058 DNA polymerase III su 97.8 0.00052 1.1E-08 68.3 15.3 162 91-262 6-181 (329)
161 PF10443 RNA12: RNA12 protein; 97.8 0.0021 4.5E-08 64.3 18.4 201 95-306 1-289 (431)
162 smart00382 AAA ATPases associa 97.8 9.1E-05 2E-09 63.6 8.1 89 112-207 2-91 (148)
163 PRK15386 type III secretion pr 97.8 3E-05 6.5E-10 77.3 5.3 87 448-545 49-138 (426)
164 PRK07993 DNA polymerase III su 97.8 0.00092 2E-08 66.3 15.8 178 97-292 9-201 (334)
165 PRK08116 hypothetical protein; 97.7 4.6E-05 9.9E-10 73.2 6.0 103 112-232 114-220 (268)
166 CHL00176 ftsH cell division pr 97.7 0.00073 1.6E-08 72.6 15.3 171 90-287 183-386 (638)
167 PRK10536 hypothetical protein; 97.7 0.00088 1.9E-08 62.7 13.7 43 91-136 56-98 (262)
168 KOG0733 Nuclear AAA ATPase (VC 97.7 0.00067 1.4E-08 69.6 13.5 171 91-288 191-395 (802)
169 PF13177 DNA_pol3_delta2: DNA 97.7 0.00042 9.1E-09 61.2 10.9 138 94-251 1-162 (162)
170 COG0466 Lon ATP-dependent Lon 97.7 0.00067 1.5E-08 71.1 13.8 158 90-263 323-508 (782)
171 PRK12608 transcription termina 97.7 0.00026 5.7E-09 69.9 10.4 104 99-204 120-230 (380)
172 KOG1514 Origin recognition com 97.7 0.0015 3.2E-08 68.4 16.0 200 90-296 396-622 (767)
173 KOG1859 Leucine-rich repeat pr 97.7 4.9E-06 1.1E-10 86.2 -1.8 102 450-555 186-289 (1096)
174 cd00116 LRR_RI Leucine-rich re 97.7 1.9E-05 4.1E-10 78.6 2.3 103 451-556 137-261 (319)
175 COG1373 Predicted ATPase (AAA+ 97.7 0.00089 1.9E-08 68.2 14.0 135 95-259 22-163 (398)
176 PRK06090 DNA polymerase III su 97.6 0.0028 6.1E-08 62.1 16.3 177 97-295 10-201 (319)
177 COG2812 DnaX DNA polymerase II 97.6 0.00035 7.6E-09 72.1 10.3 188 90-290 16-215 (515)
178 PF00004 AAA: ATPase family as 97.6 0.00013 2.8E-09 62.0 6.1 22 115-136 1-22 (132)
179 PRK12377 putative replication 97.6 0.00038 8.3E-09 65.7 9.6 74 111-204 100-173 (248)
180 KOG1859 Leucine-rich repeat pr 97.6 7.2E-06 1.6E-10 85.0 -2.2 101 449-555 162-264 (1096)
181 TIGR02640 gas_vesic_GvpN gas v 97.6 0.0016 3.4E-08 62.6 13.9 54 98-160 10-63 (262)
182 PRK08118 topology modulation p 97.6 4.6E-05 9.9E-10 67.7 3.0 36 113-148 2-37 (167)
183 TIGR02639 ClpA ATP-dependent C 97.6 0.00051 1.1E-08 76.0 11.8 47 90-136 454-508 (731)
184 cd00116 LRR_RI Leucine-rich re 97.6 2.6E-05 5.7E-10 77.6 1.5 103 451-556 108-232 (319)
185 TIGR01243 CDC48 AAA family ATP 97.6 0.00074 1.6E-08 74.9 12.9 172 91-289 179-381 (733)
186 PRK07261 topology modulation p 97.6 0.00024 5.2E-09 63.4 7.4 66 114-204 2-67 (171)
187 KOG2739 Leucine-rich acidic nu 97.5 9.3E-05 2E-09 68.1 3.9 103 450-554 42-152 (260)
188 PRK08181 transposase; Validate 97.5 0.00031 6.6E-09 67.2 7.4 105 104-233 101-209 (269)
189 PF04665 Pox_A32: Poxvirus A32 97.5 0.0004 8.6E-09 64.6 7.7 38 111-151 12-49 (241)
190 KOG3665 ZYG-1-like serine/thre 97.5 4.1E-05 8.8E-10 82.9 1.3 101 450-554 147-259 (699)
191 TIGR00763 lon ATP-dependent pr 97.5 0.0016 3.4E-08 72.6 13.7 47 90-136 320-371 (775)
192 KOG2228 Origin recognition com 97.5 0.0014 2.9E-08 62.7 11.1 172 90-264 24-220 (408)
193 KOG2004 Mitochondrial ATP-depe 97.4 0.00099 2.1E-08 69.6 10.7 157 91-263 412-596 (906)
194 CHL00195 ycf46 Ycf46; Provisio 97.4 0.0018 3.8E-08 67.4 12.7 172 90-288 228-428 (489)
195 KOG0741 AAA+-type ATPase [Post 97.4 0.0028 6E-08 64.1 13.3 145 111-285 537-704 (744)
196 TIGR01243 CDC48 AAA family ATP 97.4 0.003 6.6E-08 70.1 15.1 172 90-289 453-657 (733)
197 KOG0730 AAA+-type ATPase [Post 97.4 0.0067 1.4E-07 63.2 15.6 164 91-278 435-630 (693)
198 PRK10787 DNA-binding ATP-depen 97.3 0.00088 1.9E-08 73.9 10.0 159 90-263 322-506 (784)
199 PRK06964 DNA polymerase III su 97.3 0.01 2.2E-07 58.8 16.3 91 193-295 131-225 (342)
200 COG1223 Predicted ATPase (AAA+ 97.3 0.0054 1.2E-07 56.5 13.0 171 90-288 121-318 (368)
201 PF00448 SRP54: SRP54-type pro 97.3 0.00075 1.6E-08 61.5 7.6 89 112-203 1-92 (196)
202 smart00763 AAA_PrkA PrkA AAA d 97.3 0.00043 9.3E-09 68.1 6.1 46 91-136 52-102 (361)
203 PRK06921 hypothetical protein; 97.3 0.00054 1.2E-08 65.7 6.7 39 111-151 116-154 (266)
204 TIGR03346 chaperone_ClpB ATP-d 97.3 0.0026 5.5E-08 71.6 13.0 47 90-136 565-619 (852)
205 KOG0531 Protein phosphatase 1, 97.3 0.00011 2.3E-09 76.0 1.6 101 434-538 100-202 (414)
206 KOG0991 Replication factor C, 97.3 0.00064 1.4E-08 61.4 6.2 46 90-136 27-72 (333)
207 PRK06835 DNA replication prote 97.3 0.0019 4.2E-08 63.7 10.3 38 111-151 182-219 (329)
208 TIGR02012 tigrfam_recA protein 97.3 0.00078 1.7E-08 65.8 7.4 87 110-204 53-143 (321)
209 PRK09361 radB DNA repair and r 97.2 0.0011 2.5E-08 62.2 8.3 46 110-159 21-66 (225)
210 cd00983 recA RecA is a bacter 97.2 0.0008 1.7E-08 65.8 7.3 87 110-204 53-143 (325)
211 COG0542 clpA ATP-binding subun 97.2 0.00074 1.6E-08 72.7 7.5 105 90-205 491-604 (786)
212 KOG0733 Nuclear AAA ATPase (VC 97.2 0.0033 7.2E-08 64.7 11.7 153 111-289 544-718 (802)
213 TIGR02237 recomb_radB DNA repa 97.2 0.001 2.3E-08 61.6 7.6 49 110-162 10-58 (209)
214 KOG0734 AAA+-type ATPase conta 97.2 0.0025 5.4E-08 64.5 10.3 45 91-136 305-361 (752)
215 KOG3207 Beta-tubulin folding c 97.2 0.00014 3E-09 71.5 1.6 101 449-551 220-332 (505)
216 CHL00095 clpC Clp protease ATP 97.2 0.0012 2.6E-08 74.0 9.2 47 90-136 509-563 (821)
217 PRK06526 transposase; Provisio 97.2 0.00038 8.2E-09 66.2 4.4 26 111-136 97-122 (254)
218 KOG3207 Beta-tubulin folding c 97.2 8.7E-05 1.9E-09 72.9 0.0 107 449-557 195-313 (505)
219 PRK09354 recA recombinase A; P 97.2 0.0011 2.3E-08 65.4 7.5 87 110-204 58-148 (349)
220 PRK10865 protein disaggregatio 97.2 0.0041 8.8E-08 69.8 13.0 47 90-136 568-622 (857)
221 PRK15386 type III secretion pr 97.2 0.0011 2.4E-08 66.4 7.6 38 452-490 73-111 (426)
222 TIGR03345 VI_ClpV1 type VI sec 97.2 0.00087 1.9E-08 74.9 7.6 47 90-136 566-620 (852)
223 cd01393 recA_like RecA is a b 97.2 0.0036 7.9E-08 58.8 10.9 92 110-203 17-123 (226)
224 cd01123 Rad51_DMC1_radA Rad51_ 97.2 0.0021 4.6E-08 60.8 9.2 58 110-169 17-78 (235)
225 PF13207 AAA_17: AAA domain; P 97.2 0.00034 7.3E-09 58.6 3.2 23 114-136 1-23 (121)
226 PF07693 KAP_NTPase: KAP famil 97.1 0.009 2E-07 59.6 13.9 41 96-136 2-44 (325)
227 KOG0652 26S proteasome regulat 97.1 0.0089 1.9E-07 55.0 12.2 167 90-280 171-372 (424)
228 cd01394 radB RadB. The archaea 97.1 0.0033 7.2E-08 58.7 10.0 43 110-155 17-59 (218)
229 PF14532 Sigma54_activ_2: Sigm 97.1 0.00046 1E-08 59.3 3.9 44 93-136 1-45 (138)
230 PRK04296 thymidine kinase; Pro 97.1 0.00048 1E-08 62.7 4.1 113 113-234 3-117 (190)
231 COG0470 HolB ATPase involved i 97.1 0.0028 6.1E-08 63.2 10.0 46 91-136 2-48 (325)
232 PRK09183 transposase/IS protei 97.1 0.00061 1.3E-08 65.2 4.9 26 111-136 101-126 (259)
233 PF00560 LRR_1: Leucine Rich R 97.1 0.00011 2.4E-09 40.7 -0.2 19 524-542 2-20 (22)
234 PRK06762 hypothetical protein; 97.1 0.011 2.3E-07 52.6 12.3 25 112-136 2-26 (166)
235 PRK08699 DNA polymerase III su 97.0 0.0098 2.1E-07 58.8 12.6 27 110-136 19-45 (325)
236 TIGR02238 recomb_DMC1 meiotic 97.0 0.0039 8.4E-08 61.2 9.7 93 110-203 94-200 (313)
237 PF08423 Rad51: Rad51; InterP 97.0 0.0029 6.3E-08 60.4 8.6 59 111-170 37-98 (256)
238 cd00561 CobA_CobO_BtuR ATP:cor 97.0 0.0018 3.8E-08 56.4 6.3 117 113-234 3-139 (159)
239 COG1484 DnaC DNA replication p 97.0 0.0042 9.1E-08 59.1 9.5 90 95-204 88-177 (254)
240 PF03215 Rad17: Rad17 cell cyc 97.0 0.0027 5.9E-08 66.5 8.9 55 91-150 20-78 (519)
241 PF01695 IstB_IS21: IstB-like 97.0 0.00021 4.6E-09 64.1 0.6 73 111-204 46-118 (178)
242 PRK07952 DNA replication prote 97.0 0.005 1.1E-07 58.0 9.8 89 98-205 84-173 (244)
243 KOG3665 ZYG-1-like serine/thre 97.0 0.00045 9.8E-09 74.9 3.0 58 449-508 171-230 (699)
244 PRK04132 replication factor C 97.0 0.011 2.5E-07 65.0 13.7 153 118-293 570-729 (846)
245 KOG0731 AAA+-type ATPase conta 97.0 0.016 3.4E-07 62.3 14.1 176 90-292 311-521 (774)
246 cd01133 F1-ATPase_beta F1 ATP 97.0 0.0027 5.7E-08 60.4 7.6 91 110-203 67-172 (274)
247 TIGR03877 thermo_KaiC_1 KaiC d 96.9 0.0052 1.1E-07 58.1 9.6 49 110-163 19-67 (237)
248 COG0542 clpA ATP-binding subun 96.9 0.007 1.5E-07 65.4 11.4 155 90-263 170-346 (786)
249 KOG0736 Peroxisome assembly fa 96.9 0.054 1.2E-06 57.7 17.3 93 90-205 672-775 (953)
250 PRK06696 uridine kinase; Valid 96.9 0.0013 2.9E-08 61.6 5.4 43 94-136 2-46 (223)
251 PRK10733 hflB ATP-dependent me 96.9 0.011 2.4E-07 64.3 13.1 170 91-287 153-355 (644)
252 KOG1969 DNA replication checkp 96.9 0.0021 4.6E-08 67.4 7.0 74 110-206 324-399 (877)
253 PLN03187 meiotic recombination 96.9 0.006 1.3E-07 60.4 9.8 61 110-171 124-187 (344)
254 PRK08939 primosomal protein Dn 96.9 0.0051 1.1E-07 60.3 9.1 117 94-232 135-260 (306)
255 KOG0743 AAA+-type ATPase [Post 96.9 0.4 8.8E-06 48.3 22.1 152 113-301 236-415 (457)
256 cd01120 RecA-like_NTPases RecA 96.8 0.0066 1.4E-07 53.4 9.1 39 114-155 1-39 (165)
257 PRK11034 clpA ATP-dependent Cl 96.8 0.002 4.4E-08 70.6 6.5 47 90-136 458-512 (758)
258 PF00560 LRR_1: Leucine Rich R 96.8 0.00046 1E-08 38.1 0.7 22 499-521 1-22 (22)
259 cd03238 ABC_UvrA The excision 96.8 0.0055 1.2E-07 54.8 7.9 125 110-247 19-161 (176)
260 PRK05541 adenylylsulfate kinas 96.8 0.0028 6E-08 57.0 6.1 37 110-149 5-41 (176)
261 PLN00020 ribulose bisphosphate 96.8 0.0014 3E-08 64.2 4.2 27 110-136 146-172 (413)
262 PF00154 RecA: recA bacterial 96.8 0.021 4.6E-07 55.7 12.3 89 110-206 51-143 (322)
263 cd01121 Sms Sms (bacterial rad 96.7 0.0067 1.5E-07 61.0 9.1 84 111-203 81-167 (372)
264 PRK06067 flagellar accessory p 96.7 0.01 2.2E-07 56.1 9.8 89 110-204 23-130 (234)
265 PRK13531 regulatory ATPase Rav 96.7 0.0022 4.8E-08 65.6 5.4 44 90-136 20-63 (498)
266 TIGR02239 recomb_RAD51 DNA rep 96.7 0.0089 1.9E-07 58.9 9.5 61 110-171 94-157 (316)
267 COG4608 AppF ABC-type oligopep 96.7 0.0093 2E-07 55.9 9.0 125 110-240 37-177 (268)
268 COG2607 Predicted ATPase (AAA+ 96.7 0.0089 1.9E-07 54.6 8.5 47 90-136 60-109 (287)
269 PRK00771 signal recognition pa 96.7 0.011 2.5E-07 60.5 10.5 89 111-203 94-184 (437)
270 PRK04301 radA DNA repair and r 96.7 0.0084 1.8E-07 59.4 9.3 60 110-170 100-162 (317)
271 PRK15455 PrkA family serine pr 96.7 0.002 4.3E-08 66.9 4.9 47 90-136 76-127 (644)
272 cd03115 SRP The signal recogni 96.7 0.0068 1.5E-07 54.3 7.8 88 114-204 2-92 (173)
273 cd03247 ABCC_cytochrome_bd The 96.7 0.0075 1.6E-07 54.3 8.1 120 110-237 26-161 (178)
274 PRK04328 hypothetical protein; 96.7 0.0079 1.7E-07 57.3 8.5 42 110-154 21-62 (249)
275 COG2884 FtsE Predicted ATPase 96.7 0.014 3E-07 51.5 9.0 125 110-239 26-203 (223)
276 PRK07132 DNA polymerase III su 96.6 0.11 2.3E-06 50.7 16.1 168 99-294 5-184 (299)
277 PF10236 DAP3: Mitochondrial r 96.6 0.044 9.5E-07 53.9 13.6 49 244-292 258-306 (309)
278 cd01131 PilT Pilus retraction 96.6 0.003 6.6E-08 57.9 5.1 109 113-235 2-111 (198)
279 cd03214 ABC_Iron-Siderophores_ 96.6 0.0087 1.9E-07 54.0 7.9 121 110-236 23-161 (180)
280 KOG0744 AAA+-type ATPase [Post 96.6 0.0077 1.7E-07 57.3 7.5 81 111-204 176-260 (423)
281 PLN03186 DNA repair protein RA 96.6 0.018 3.9E-07 57.1 10.6 61 110-171 121-184 (342)
282 PRK14722 flhF flagellar biosyn 96.6 0.0088 1.9E-07 59.8 8.4 89 111-204 136-225 (374)
283 PRK12678 transcription termina 96.5 0.0029 6.2E-08 65.5 4.9 100 101-204 405-513 (672)
284 cd03222 ABC_RNaseL_inhibitor T 96.5 0.0078 1.7E-07 53.9 7.1 104 110-237 23-136 (177)
285 KOG1644 U2-associated snRNP A' 96.5 0.0019 4.2E-08 57.2 3.0 96 454-553 22-121 (233)
286 TIGR00959 ffh signal recogniti 96.5 0.011 2.5E-07 60.3 9.1 92 111-204 98-192 (428)
287 PRK10867 signal recognition pa 96.5 0.011 2.4E-07 60.4 9.0 91 111-203 99-192 (433)
288 PF00485 PRK: Phosphoribulokin 96.5 0.016 3.4E-07 53.0 9.3 83 114-198 1-87 (194)
289 COG1618 Predicted nucleotide k 96.5 0.003 6.5E-08 54.0 4.0 26 111-136 4-29 (179)
290 PRK07667 uridine kinase; Provi 96.5 0.0035 7.6E-08 57.2 4.8 38 99-136 3-41 (193)
291 TIGR02858 spore_III_AA stage I 96.5 0.018 3.9E-07 55.2 9.8 128 99-235 98-231 (270)
292 cd03216 ABC_Carb_Monos_I This 96.5 0.0039 8.5E-08 55.2 4.9 116 110-236 24-145 (163)
293 COG1136 SalX ABC-type antimicr 96.5 0.014 3.1E-07 53.7 8.6 125 110-239 29-209 (226)
294 COG1066 Sms Predicted ATP-depe 96.5 0.017 3.7E-07 57.1 9.5 94 100-204 80-178 (456)
295 KOG0735 AAA+-type ATPase [Post 96.5 0.042 9.1E-07 57.9 12.7 171 91-290 668-871 (952)
296 TIGR00708 cobA cob(I)alamin ad 96.5 0.013 2.8E-07 51.7 7.9 118 111-233 4-140 (173)
297 COG0572 Udk Uridine kinase [Nu 96.5 0.0099 2.1E-07 54.2 7.3 26 111-136 7-32 (218)
298 TIGR03881 KaiC_arch_4 KaiC dom 96.5 0.02 4.4E-07 53.8 10.0 42 110-154 18-59 (229)
299 TIGR03499 FlhF flagellar biosy 96.5 0.012 2.7E-07 57.0 8.6 88 111-203 193-281 (282)
300 COG0468 RecA RecA/RadA recombi 96.5 0.013 2.9E-07 55.9 8.5 89 110-203 58-150 (279)
301 KOG2739 Leucine-rich acidic nu 96.5 0.0017 3.7E-08 60.0 2.4 83 471-556 41-127 (260)
302 PRK13539 cytochrome c biogenes 96.5 0.0093 2E-07 55.2 7.4 27 110-136 26-52 (207)
303 PTZ00035 Rad51 protein; Provis 96.5 0.031 6.7E-07 55.6 11.5 70 101-171 106-179 (337)
304 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.5 0.012 2.6E-07 50.8 7.6 105 110-237 24-131 (144)
305 PF13238 AAA_18: AAA domain; P 96.4 0.0024 5.1E-08 53.9 3.1 22 115-136 1-22 (129)
306 KOG0739 AAA+-type ATPase [Post 96.4 0.048 1E-06 51.5 11.7 170 91-288 134-334 (439)
307 KOG0728 26S proteasome regulat 96.4 0.14 3.1E-06 47.1 14.3 182 92-297 148-365 (404)
308 COG1102 Cmk Cytidylate kinase 96.4 0.0068 1.5E-07 51.8 5.6 45 114-172 2-46 (179)
309 TIGR02236 recomb_radA DNA repa 96.4 0.016 3.6E-07 57.2 9.4 59 111-170 94-155 (310)
310 cd03246 ABCC_Protease_Secretio 96.4 0.0063 1.4E-07 54.5 5.9 27 110-136 26-52 (173)
311 PHA00729 NTP-binding motif con 96.4 0.0049 1.1E-07 56.8 5.0 34 102-136 8-41 (226)
312 PF13481 AAA_25: AAA domain; P 96.4 0.013 2.9E-07 53.4 8.0 44 111-154 31-81 (193)
313 PRK13765 ATP-dependent proteas 96.4 0.0065 1.4E-07 65.2 6.6 74 90-169 31-104 (637)
314 TIGR00390 hslU ATP-dependent p 96.4 0.0085 1.8E-07 60.2 6.8 47 90-136 12-71 (441)
315 PRK06547 hypothetical protein; 96.4 0.0054 1.2E-07 54.6 5.0 32 104-136 8-39 (172)
316 cd03223 ABCD_peroxisomal_ALDP 96.4 0.015 3.4E-07 51.5 7.9 117 110-236 25-151 (166)
317 PRK09519 recA DNA recombinatio 96.3 0.011 2.5E-07 64.2 8.2 87 110-204 58-148 (790)
318 cd03228 ABCC_MRP_Like The MRP 96.3 0.012 2.7E-07 52.5 7.2 119 110-237 26-159 (171)
319 cd01129 PulE-GspE PulE/GspE Th 96.3 0.0092 2E-07 57.3 6.7 104 93-211 62-166 (264)
320 PF00006 ATP-synt_ab: ATP synt 96.3 0.02 4.2E-07 52.9 8.6 97 102-203 5-114 (215)
321 KOG2982 Uncharacterized conser 96.3 0.0021 4.5E-08 60.4 2.1 84 470-555 68-156 (418)
322 PF07728 AAA_5: AAA domain (dy 96.3 0.0085 1.8E-07 51.4 5.9 42 115-162 2-43 (139)
323 COG0464 SpoVK ATPases of the A 96.3 0.052 1.1E-06 57.5 12.9 154 91-267 243-427 (494)
324 PRK08233 hypothetical protein; 96.3 0.0035 7.7E-08 56.6 3.5 25 112-136 3-27 (182)
325 cd01124 KaiC KaiC is a circadi 96.3 0.013 2.8E-07 53.1 7.3 45 114-163 1-45 (187)
326 TIGR00064 ftsY signal recognit 96.3 0.025 5.4E-07 54.5 9.4 92 110-204 70-164 (272)
327 COG0465 HflB ATP-dependent Zn 96.3 0.038 8.3E-07 58.2 11.3 173 90-290 150-356 (596)
328 PF13671 AAA_33: AAA domain; P 96.3 0.0038 8.2E-08 53.8 3.4 23 114-136 1-23 (143)
329 PRK08972 fliI flagellum-specif 96.3 0.01 2.3E-07 60.2 6.9 90 110-204 160-262 (444)
330 cd03230 ABC_DR_subfamily_A Thi 96.3 0.0063 1.4E-07 54.5 4.9 120 110-237 24-159 (173)
331 TIGR03878 thermo_KaiC_2 KaiC d 96.3 0.02 4.3E-07 54.9 8.5 40 111-153 35-74 (259)
332 KOG0735 AAA+-type ATPase [Post 96.2 0.0092 2E-07 62.6 6.4 159 111-293 430-614 (952)
333 COG1121 ZnuC ABC-type Mn/Zn tr 96.2 0.021 4.5E-07 53.5 8.2 123 111-236 29-202 (254)
334 cd02019 NK Nucleoside/nucleoti 96.2 0.0039 8.6E-08 46.1 2.8 23 114-136 1-23 (69)
335 cd03229 ABC_Class3 This class 96.2 0.0081 1.7E-07 54.1 5.4 27 110-136 24-50 (178)
336 PRK11823 DNA repair protein Ra 96.2 0.015 3.2E-07 60.3 8.0 96 100-204 67-166 (446)
337 PRK05201 hslU ATP-dependent pr 96.2 0.011 2.5E-07 59.3 6.6 47 90-136 15-74 (443)
338 COG1419 FlhF Flagellar GTP-bin 96.2 0.042 9.1E-07 54.7 10.5 89 111-204 202-291 (407)
339 PRK05973 replicative DNA helic 96.2 0.032 6.9E-07 52.2 9.2 49 111-164 63-111 (237)
340 COG0563 Adk Adenylate kinase a 96.2 0.0098 2.1E-07 53.2 5.6 23 114-136 2-24 (178)
341 PRK11889 flhF flagellar biosyn 96.2 0.027 5.8E-07 56.2 9.0 89 111-204 240-330 (436)
342 KOG1909 Ran GTPase-activating 96.2 0.0015 3.3E-08 62.6 0.3 106 449-556 183-309 (382)
343 cd01135 V_A-ATPase_B V/A-type 96.1 0.022 4.7E-07 54.2 8.0 95 110-204 67-176 (276)
344 PRK08533 flagellar accessory p 96.1 0.031 6.8E-07 52.4 9.2 54 111-170 23-76 (230)
345 PRK05480 uridine/cytidine kina 96.1 0.0051 1.1E-07 57.0 3.8 27 110-136 4-30 (209)
346 TIGR00235 udk uridine kinase. 96.1 0.0051 1.1E-07 56.9 3.7 27 110-136 4-30 (207)
347 PRK12727 flagellar biosynthesi 96.1 0.022 4.8E-07 59.1 8.5 89 111-204 349-438 (559)
348 COG1126 GlnQ ABC-type polar am 96.1 0.041 8.9E-07 49.7 9.1 126 110-239 26-202 (240)
349 PRK05986 cob(I)alamin adenolsy 96.1 0.013 2.9E-07 52.4 6.1 120 111-234 21-159 (191)
350 TIGR01425 SRP54_euk signal rec 96.1 0.025 5.3E-07 57.6 8.7 26 111-136 99-124 (429)
351 PF00910 RNA_helicase: RNA hel 96.1 0.0038 8.3E-08 50.8 2.4 22 115-136 1-22 (107)
352 PRK10463 hydrogenase nickel in 96.1 0.027 5.9E-07 54.1 8.4 28 109-136 101-128 (290)
353 PF06309 Torsin: Torsin; Inte 96.1 0.012 2.7E-07 48.5 5.2 47 90-136 25-77 (127)
354 PF13504 LRR_7: Leucine rich r 96.1 0.0035 7.6E-08 32.0 1.3 16 523-538 2-17 (17)
355 TIGR00416 sms DNA repair prote 96.1 0.025 5.4E-07 58.7 8.8 97 99-204 80-180 (454)
356 PF03308 ArgK: ArgK protein; 96.1 0.012 2.7E-07 54.8 5.8 58 98-156 14-72 (266)
357 PRK12723 flagellar biosynthesi 96.1 0.034 7.3E-07 56.2 9.4 90 111-204 173-264 (388)
358 cd00267 ABC_ATPase ABC (ATP-bi 96.1 0.0096 2.1E-07 52.3 5.0 116 111-238 24-145 (157)
359 PF06745 KaiC: KaiC; InterPro 96.0 0.0054 1.2E-07 57.6 3.5 88 110-203 17-124 (226)
360 KOG2123 Uncharacterized conser 96.0 0.00038 8.2E-09 64.5 -4.1 60 448-508 38-98 (388)
361 TIGR00554 panK_bact pantothena 96.0 0.044 9.5E-07 53.0 9.7 80 110-194 60-141 (290)
362 TIGR00764 lon_rel lon-related 96.0 0.02 4.4E-07 61.6 8.2 74 90-169 18-91 (608)
363 PRK14527 adenylate kinase; Pro 96.0 0.01 2.3E-07 54.0 5.3 27 110-136 4-30 (191)
364 PF00158 Sigma54_activat: Sigm 96.0 0.011 2.4E-07 52.4 5.2 45 92-136 1-46 (168)
365 PTZ00301 uridine kinase; Provi 96.0 0.0057 1.2E-07 56.3 3.4 25 112-136 3-27 (210)
366 PRK13543 cytochrome c biogenes 96.0 0.035 7.6E-07 51.6 8.8 27 110-136 35-61 (214)
367 PF01583 APS_kinase: Adenylyls 96.0 0.0077 1.7E-07 52.2 3.9 25 112-136 2-26 (156)
368 PF07726 AAA_3: ATPase family 96.0 0.0047 1E-07 51.1 2.5 28 115-145 2-29 (131)
369 KOG3347 Predicted nucleotide k 96.0 0.011 2.4E-07 49.7 4.6 69 112-193 7-75 (176)
370 PTZ00088 adenylate kinase 1; P 96.0 0.0061 1.3E-07 57.0 3.5 23 114-136 8-30 (229)
371 PRK12597 F0F1 ATP synthase sub 96.0 0.017 3.8E-07 59.3 7.1 92 110-203 141-246 (461)
372 PRK09270 nucleoside triphospha 96.0 0.01 2.2E-07 55.9 5.1 28 109-136 30-57 (229)
373 cd02025 PanK Pantothenate kina 96.0 0.036 7.9E-07 51.6 8.6 23 114-136 1-23 (220)
374 PTZ00494 tuzin-like protein; P 96.0 0.091 2E-06 52.8 11.5 164 89-263 370-544 (664)
375 COG0714 MoxR-like ATPases [Gen 96.0 0.017 3.6E-07 57.7 6.8 62 91-161 25-86 (329)
376 PF12775 AAA_7: P-loop contain 96.0 0.0077 1.7E-07 58.0 4.2 57 100-161 23-79 (272)
377 PRK08927 fliI flagellum-specif 95.9 0.03 6.5E-07 57.1 8.5 90 110-204 156-258 (442)
378 COG1703 ArgK Putative periplas 95.9 0.015 3.3E-07 55.1 5.8 60 100-160 38-98 (323)
379 KOG0726 26S proteasome regulat 95.9 0.087 1.9E-06 49.6 10.6 46 91-136 186-243 (440)
380 PRK14974 cell division protein 95.9 0.037 8E-07 54.8 8.9 91 111-204 139-232 (336)
381 PRK03839 putative kinase; Prov 95.9 0.0062 1.4E-07 54.9 3.2 23 114-136 2-24 (180)
382 PRK08149 ATP synthase SpaL; Va 95.9 0.032 6.9E-07 56.8 8.5 90 110-204 149-251 (428)
383 PRK12724 flagellar biosynthesi 95.9 0.029 6.2E-07 56.7 8.1 84 112-203 223-308 (432)
384 KOG2170 ATPase of the AAA+ sup 95.9 0.02 4.4E-07 54.1 6.4 98 90-206 82-190 (344)
385 PF01078 Mg_chelatase: Magnesi 95.9 0.014 3E-07 52.9 5.2 44 90-136 3-46 (206)
386 COG4618 ArpD ABC-type protease 95.9 0.045 9.8E-07 55.6 9.3 27 110-136 360-386 (580)
387 PRK06002 fliI flagellum-specif 95.9 0.022 4.9E-07 58.1 7.3 90 110-204 163-264 (450)
388 PRK06217 hypothetical protein; 95.9 0.014 3E-07 52.8 5.2 23 114-136 3-25 (183)
389 TIGR00150 HI0065_YjeE ATPase, 95.9 0.017 3.6E-07 48.7 5.3 40 97-136 6-46 (133)
390 PRK12726 flagellar biosynthesi 95.9 0.05 1.1E-06 54.1 9.3 89 111-204 205-295 (407)
391 TIGR02655 circ_KaiC circadian 95.9 0.048 1E-06 57.4 9.9 98 100-203 250-362 (484)
392 PRK09280 F0F1 ATP synthase sub 95.8 0.028 6E-07 57.6 7.8 93 110-204 142-248 (463)
393 TIGR03305 alt_F1F0_F1_bet alte 95.8 0.016 3.4E-07 59.3 6.0 93 110-204 136-242 (449)
394 PRK05439 pantothenate kinase; 95.8 0.076 1.7E-06 51.8 10.5 27 110-136 84-110 (311)
395 TIGR01360 aden_kin_iso1 adenyl 95.8 0.0074 1.6E-07 54.8 3.3 26 111-136 2-27 (188)
396 KOG0473 Leucine-rich repeat pr 95.8 0.00019 4E-09 64.8 -6.9 87 446-535 37-124 (326)
397 cd03217 ABC_FeS_Assembly ABC-t 95.8 0.025 5.3E-07 52.0 6.8 26 110-135 24-49 (200)
398 KOG2035 Replication factor C, 95.8 0.54 1.2E-05 44.2 15.1 209 91-318 14-261 (351)
399 TIGR03498 FliI_clade3 flagella 95.8 0.023 4.9E-07 57.9 6.9 91 110-204 138-240 (418)
400 PRK04040 adenylate kinase; Pro 95.8 0.0084 1.8E-07 54.3 3.3 25 112-136 2-26 (188)
401 cd03215 ABC_Carb_Monos_II This 95.8 0.021 4.5E-07 51.6 5.9 27 110-136 24-50 (182)
402 PF00625 Guanylate_kin: Guanyl 95.7 0.015 3.3E-07 52.5 5.0 38 112-152 2-39 (183)
403 PRK00131 aroK shikimate kinase 95.7 0.0088 1.9E-07 53.5 3.4 26 111-136 3-28 (175)
404 PRK00625 shikimate kinase; Pro 95.7 0.008 1.7E-07 53.6 3.0 23 114-136 2-24 (173)
405 cd02028 UMPK_like Uridine mono 95.7 0.022 4.7E-07 51.2 5.9 23 114-136 1-23 (179)
406 COG0467 RAD55 RecA-superfamily 95.7 0.013 2.8E-07 56.4 4.6 55 110-170 21-75 (260)
407 TIGR01359 UMP_CMP_kin_fam UMP- 95.7 0.0076 1.6E-07 54.5 2.8 23 114-136 1-23 (183)
408 KOG0727 26S proteasome regulat 95.7 0.26 5.7E-06 45.4 12.4 162 91-276 156-352 (408)
409 cd03281 ABC_MSH5_euk MutS5 hom 95.7 0.011 2.3E-07 54.9 3.7 23 112-134 29-51 (213)
410 PF08298 AAA_PrkA: PrkA AAA do 95.7 0.018 4E-07 56.3 5.4 47 90-136 61-112 (358)
411 PRK05922 type III secretion sy 95.7 0.032 7E-07 56.8 7.4 90 110-204 155-257 (434)
412 PRK14721 flhF flagellar biosyn 95.7 0.064 1.4E-06 54.6 9.5 88 111-203 190-278 (420)
413 TIGR01039 atpD ATP synthase, F 95.7 0.041 8.8E-07 56.3 8.1 93 110-204 141-247 (461)
414 PRK05917 DNA polymerase III su 95.7 0.31 6.7E-06 47.0 13.7 39 98-136 5-43 (290)
415 KOG0729 26S proteasome regulat 95.7 0.029 6.2E-07 51.9 6.3 46 91-136 178-235 (435)
416 cd03213 ABCG_EPDR ABCG transpo 95.7 0.032 6.8E-07 51.0 6.8 27 110-136 33-59 (194)
417 TIGR02030 BchI-ChlI magnesium 95.7 0.017 3.7E-07 57.3 5.3 46 90-136 4-49 (337)
418 CHL00081 chlI Mg-protoporyphyr 95.6 0.013 2.9E-07 58.0 4.5 46 90-136 17-62 (350)
419 PRK05703 flhF flagellar biosyn 95.6 0.039 8.6E-07 56.7 8.1 87 112-203 221-308 (424)
420 TIGR03575 selen_PSTK_euk L-ser 95.6 0.073 1.6E-06 52.6 9.6 22 115-136 2-23 (340)
421 PF03193 DUF258: Protein of un 95.6 0.018 3.9E-07 50.2 4.7 36 97-136 24-59 (161)
422 TIGR01040 V-ATPase_V1_B V-type 95.6 0.045 9.7E-07 55.8 8.2 95 110-204 139-257 (466)
423 PF02562 PhoH: PhoH-like prote 95.6 0.014 3.1E-07 53.1 4.3 53 94-150 4-56 (205)
424 TIGR01650 PD_CobS cobaltochela 95.6 0.032 6.9E-07 54.5 6.9 44 90-136 45-88 (327)
425 cd00227 CPT Chloramphenicol (C 95.6 0.01 2.3E-07 53.2 3.4 25 112-136 2-26 (175)
426 PRK06936 type III secretion sy 95.6 0.033 7.1E-07 56.8 7.2 90 110-204 160-262 (439)
427 PF13086 AAA_11: AAA domain; P 95.6 0.03 6.4E-07 52.6 6.7 67 97-166 5-75 (236)
428 cd01136 ATPase_flagellum-secre 95.6 0.062 1.3E-06 52.8 8.9 90 110-204 67-169 (326)
429 COG4088 Predicted nucleotide k 95.6 0.012 2.7E-07 52.4 3.5 24 113-136 2-25 (261)
430 cd03369 ABCC_NFT1 Domain 2 of 95.6 0.075 1.6E-06 49.1 9.1 27 110-136 32-58 (207)
431 PRK15429 formate hydrogenlyase 95.6 0.041 8.8E-07 60.8 8.5 47 90-136 376-423 (686)
432 TIGR02868 CydC thiol reductant 95.6 0.047 1E-06 58.5 8.9 27 110-136 359-385 (529)
433 TIGR02902 spore_lonB ATP-depen 95.6 0.022 4.7E-07 60.6 6.1 46 90-136 65-110 (531)
434 PTZ00185 ATPase alpha subunit; 95.6 0.077 1.7E-06 54.6 9.6 95 110-204 187-299 (574)
435 TIGR01420 pilT_fam pilus retra 95.6 0.017 3.8E-07 57.8 5.1 111 111-234 121-231 (343)
436 cd00544 CobU Adenosylcobinamid 95.6 0.071 1.5E-06 47.3 8.4 80 114-203 1-82 (169)
437 COG1936 Predicted nucleotide k 95.5 0.0098 2.1E-07 51.6 2.8 20 114-133 2-21 (180)
438 cd01134 V_A-ATPase_A V/A-type 95.5 0.16 3.5E-06 50.0 11.3 59 102-165 147-206 (369)
439 COG1428 Deoxynucleoside kinase 95.5 0.012 2.5E-07 53.0 3.2 26 111-136 3-28 (216)
440 cd01132 F1_ATPase_alpha F1 ATP 95.5 0.056 1.2E-06 51.4 8.0 90 110-204 67-171 (274)
441 cd03250 ABCC_MRP_domain1 Domai 95.5 0.17 3.6E-06 46.6 11.1 27 110-136 29-55 (204)
442 TIGR02322 phosphon_PhnN phosph 95.5 0.012 2.6E-07 53.0 3.3 24 113-136 2-25 (179)
443 PRK13407 bchI magnesium chelat 95.5 0.018 3.9E-07 56.9 4.7 46 90-136 8-53 (334)
444 PF13245 AAA_19: Part of AAA d 95.5 0.025 5.5E-07 42.6 4.5 26 111-136 9-34 (76)
445 cd02024 NRK1 Nicotinamide ribo 95.5 0.01 2.2E-07 53.4 2.8 23 114-136 1-23 (187)
446 PRK00279 adk adenylate kinase; 95.5 0.022 4.9E-07 52.9 5.2 23 114-136 2-24 (215)
447 PHA02774 E1; Provisional 95.5 0.033 7.1E-07 58.2 6.7 50 97-151 419-468 (613)
448 PRK10416 signal recognition pa 95.4 0.087 1.9E-06 51.9 9.4 26 111-136 113-138 (318)
449 cd02023 UMPK Uridine monophosp 95.4 0.01 2.2E-07 54.5 2.7 23 114-136 1-23 (198)
450 PRK09099 type III secretion sy 95.4 0.056 1.2E-06 55.3 8.3 91 110-204 161-263 (441)
451 cd01122 GP4d_helicase GP4d_hel 95.4 0.12 2.5E-06 50.1 10.3 53 111-167 29-81 (271)
452 cd02021 GntK Gluconate kinase 95.4 0.011 2.4E-07 51.5 2.7 23 114-136 1-23 (150)
453 COG4133 CcmA ABC-type transpor 95.4 0.061 1.3E-06 47.5 7.2 26 111-136 27-52 (209)
454 PRK00889 adenylylsulfate kinas 95.4 0.015 3.3E-07 52.1 3.5 26 111-136 3-28 (175)
455 PF08433 KTI12: Chromatin asso 95.4 0.015 3.2E-07 55.8 3.6 25 113-137 2-26 (270)
456 PRK06995 flhF flagellar biosyn 95.4 0.069 1.5E-06 55.4 8.6 89 111-204 255-344 (484)
457 cd02020 CMPK Cytidine monophos 95.3 0.012 2.6E-07 50.9 2.7 23 114-136 1-23 (147)
458 TIGR01351 adk adenylate kinase 95.3 0.023 5.1E-07 52.6 4.8 22 115-136 2-23 (210)
459 PRK07594 type III secretion sy 95.3 0.064 1.4E-06 54.8 8.2 90 110-204 153-255 (433)
460 PF03205 MobB: Molybdopterin g 95.3 0.023 5E-07 48.7 4.3 39 113-153 1-39 (140)
461 smart00370 LRR Leucine-rich re 95.3 0.016 3.4E-07 33.4 2.3 22 521-542 1-22 (26)
462 smart00369 LRR_TYP Leucine-ric 95.3 0.016 3.4E-07 33.4 2.3 22 521-542 1-22 (26)
463 KOG1051 Chaperone HSP104 and r 95.3 0.067 1.5E-06 58.9 8.8 102 90-205 562-671 (898)
464 cd00984 DnaB_C DnaB helicase C 95.3 0.085 1.8E-06 50.0 8.7 52 111-166 12-63 (242)
465 PF05970 PIF1: PIF1-like helic 95.3 0.036 7.8E-07 56.1 6.4 38 98-136 9-46 (364)
466 PF03266 NTPase_1: NTPase; In 95.3 0.014 2.9E-07 51.8 2.9 22 115-136 2-23 (168)
467 TIGR01069 mutS2 MutS2 family p 95.3 0.0091 2E-07 66.0 2.2 25 111-135 321-345 (771)
468 PF13504 LRR_7: Leucine rich r 95.3 0.011 2.4E-07 30.2 1.3 17 498-515 1-17 (17)
469 COG0396 sufC Cysteine desulfur 95.3 0.15 3.2E-06 46.7 9.3 62 181-245 149-216 (251)
470 KOG2123 Uncharacterized conser 95.3 0.0021 4.5E-08 59.8 -2.4 102 450-555 18-127 (388)
471 TIGR03522 GldA_ABC_ATP gliding 95.3 0.1 2.3E-06 51.2 9.3 27 110-136 26-52 (301)
472 COG2401 ABC-type ATPase fused 95.2 0.015 3.2E-07 57.4 3.2 151 93-244 374-579 (593)
473 PRK05800 cobU adenosylcobinami 95.2 0.075 1.6E-06 47.2 7.5 83 113-203 2-85 (170)
474 PRK13947 shikimate kinase; Pro 95.2 0.016 3.5E-07 51.6 3.3 23 114-136 3-25 (171)
475 PRK15453 phosphoribulokinase; 95.2 0.11 2.5E-06 49.5 9.0 27 110-136 3-29 (290)
476 PRK12339 2-phosphoglycerate ki 95.2 0.018 3.9E-07 52.5 3.6 25 112-136 3-27 (197)
477 COG1131 CcmA ABC-type multidru 95.2 0.099 2.1E-06 51.1 8.9 26 111-136 30-55 (293)
478 COG2274 SunT ABC-type bacterio 95.2 0.091 2E-06 57.4 9.4 27 110-136 497-523 (709)
479 CHL00206 ycf2 Ycf2; Provisiona 95.2 0.12 2.6E-06 61.1 10.5 26 111-136 1629-1654(2281)
480 PRK00300 gmk guanylate kinase; 95.2 0.018 3.8E-07 53.2 3.5 26 111-136 4-29 (205)
481 KOG0473 Leucine-rich repeat pr 95.2 0.00086 1.9E-08 60.6 -5.0 83 470-555 39-121 (326)
482 PRK10875 recD exonuclease V su 95.2 0.063 1.4E-06 57.7 8.0 56 111-166 166-221 (615)
483 COG0003 ArsA Predicted ATPase 95.2 0.031 6.8E-07 54.7 5.3 49 112-163 2-50 (322)
484 PF08477 Miro: Miro-like prote 95.2 0.017 3.8E-07 47.8 3.1 22 115-136 2-23 (119)
485 cd00071 GMPK Guanosine monopho 95.2 0.017 3.8E-07 49.3 3.1 23 114-136 1-23 (137)
486 KOG0738 AAA+-type ATPase [Post 95.2 0.22 4.7E-06 49.1 10.7 45 92-136 214-269 (491)
487 CHL00060 atpB ATP synthase CF1 95.2 0.066 1.4E-06 55.2 7.7 93 110-204 159-272 (494)
488 KOG0927 Predicted transporter 95.1 0.61 1.3E-05 48.1 14.2 123 110-235 414-568 (614)
489 KOG1970 Checkpoint RAD17-RFC c 95.1 0.053 1.1E-06 55.6 6.8 49 96-149 88-142 (634)
490 KOG1532 GTPase XAB1, interacts 95.1 0.021 4.6E-07 53.1 3.7 26 111-136 18-43 (366)
491 TIGR03263 guanyl_kin guanylate 95.1 0.017 3.6E-07 52.1 3.1 24 113-136 2-25 (180)
492 PRK05342 clpX ATP-dependent pr 95.1 0.033 7.1E-07 56.9 5.5 47 90-136 71-132 (412)
493 PRK09302 circadian clock prote 95.1 0.12 2.7E-06 54.9 10.1 98 100-203 260-372 (509)
494 PRK13949 shikimate kinase; Pro 95.1 0.019 4E-07 51.1 3.3 23 114-136 3-25 (169)
495 TIGR01041 ATP_syn_B_arch ATP s 95.1 0.075 1.6E-06 54.7 8.0 94 110-204 139-248 (458)
496 PRK07721 fliI flagellum-specif 95.1 0.084 1.8E-06 54.3 8.4 91 110-204 156-258 (438)
497 KOG1909 Ran GTPase-activating 95.1 0.0095 2.1E-07 57.3 1.4 106 448-555 154-280 (382)
498 COG1124 DppF ABC-type dipeptid 95.1 0.029 6.4E-07 51.6 4.5 27 110-136 31-57 (252)
499 COG3640 CooC CO dehydrogenase 95.1 0.038 8.3E-07 50.5 5.1 50 114-172 2-51 (255)
500 COG1224 TIP49 DNA helicase TIP 95.1 0.051 1.1E-06 52.7 6.2 54 89-143 38-95 (450)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1e-84 Score=704.34 Aligned_cols=548 Identities=47% Similarity=0.809 Sum_probs=489.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHhhhh----------------hhccccccCCccccchHHHHHHHHHHHHHHHHh
Q 036236 4 LDRVQRWISRVEVVETEADELIRHGSREIEK----------------LCVGGYCSKNCMSSYKFGKQVAKKLRDVRTLIS 67 (557)
Q Consensus 4 ~~~v~~Wl~~~~~~~~d~ed~ld~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 67 (557)
...++.|.+.+++++|++||.++.+..+... .|+.++|.+....-+.+++++.+.++.++.+..
T Consensus 54 ~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~ 133 (889)
T KOG4658|consen 54 LERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGS 133 (889)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhcc
Confidence 4678899999999999999999988654322 233456666666777888999999999999988
Q ss_pred cCCcccccc-cCCCCccccCCCCCcc-cchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcce
Q 036236 68 EGVFEVVAD-RAPEPVADERPTEPTI-VGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDC 145 (557)
Q Consensus 68 ~~~~~~~~~-~~~~~~~~~~~~~~~~-vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~ 145 (557)
++.|+.+.. ..+......+|..+.. ||.+..++++.+.|. +++..+++|+||||+||||||++++++...+..+|+.
T Consensus 134 ~~~~~~~~~~~~~~~~~e~~~~~~~~~VG~e~~~~kl~~~L~-~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~ 212 (889)
T KOG4658|consen 134 KGVFEVVGESLDPREKVETRPIQSESDVGLETMLEKLWNRLM-EDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDG 212 (889)
T ss_pred ccceecccccccchhhcccCCCCccccccHHHHHHHHHHHhc-cCCCCEEEEECCCcccHHHHHHHHhcccchhcccCce
Confidence 887776654 2233333444444333 999999999999999 4445999999999999999999999998448899999
Q ss_pred EEEEEeCCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCccccccccccCCCCCCCCcE
Q 036236 146 VIWVVVSKDLRLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWERVDLTKVGVPLPGPQNTTSK 225 (557)
Q Consensus 146 ~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~s~ 225 (557)
++||.||+.++...++.+|+..++.....+......+.+..+.+.|+++||+|||||||+..+|+.+..++|...+| |+
T Consensus 213 ~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g-~K 291 (889)
T KOG4658|consen 213 VIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENG-SK 291 (889)
T ss_pred EEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCC-eE
Confidence 99999999999999999999999987776666667899999999999999999999999999999999999998777 99
Q ss_pred EEEeeCChHHHhc-ccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHHHHHhccCCC
Q 036236 226 VVFTTRSIDVCGS-MESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTIGRAMACKRT 304 (557)
Q Consensus 226 iliTtR~~~v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~~~ 304 (557)
|++|||+..|+.. +++...++++.|+++|||.||++.++.......+.++++|++++++|+|+|||++++|+.|+.+.+
T Consensus 292 vvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t 371 (889)
T KOG4658|consen 292 VVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKT 371 (889)
T ss_pred EEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCc
Confidence 9999999999998 788889999999999999999999998865666779999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc-ccccCCchhhHhhhHhhhhccCCCcchhHHHhhhccCCCCcccCHHHHHHHHHhcCCccccc-ch
Q 036236 305 AEEWRHAVEVLRRS-ASEFAGLGEKVYSLLKFSYDSLQNETIKSCFLYCCLYPEDYGILKWDLIDCWIGEGFLEQSD-RL 382 (557)
Q Consensus 305 ~~~w~~~l~~l~~~-~~~~~~~~~~i~~~l~~sy~~L~~~~~k~~~l~~~~fp~~~~i~~~~li~~w~a~g~i~~~~-~~ 382 (557)
..+|+.+.+.+.+. ..+.++..+.++.+|.+||+.||+ ++|.||+|||+||+||.|+++.|+.+|+||||+.+.. +.
T Consensus 372 ~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~-~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~ 450 (889)
T KOG4658|consen 372 VQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPE-ELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGE 450 (889)
T ss_pred HHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhH-HHHHHHHhhccCCcccccchHHHHHHHHhccCcCcccccc
Confidence 99999999999887 566666778999999999999995 9999999999999999999999999999999999855 34
Q ss_pred hHHHHHHHHHHHHHHhccccccC----CCcEEeCHHHHHHHHHHhhhhccccceEEEEcCCCcccCCcccccccceEEEc
Q 036236 383 SAEYQGYYIVGTLVQACLLEELE----DDKVKMHDVIRDMALWITSEIEKEKRNFLVRAGAGLKEAPAVKGWENVRRLSL 458 (557)
Q Consensus 383 ~~~~~~~~~l~~L~~~sll~~~~----~~~~~mHdlv~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l 458 (557)
..++.|+.|+.+|++++|++... ..+|+|||+||++|.+++++.+.+++++++.++.+....|...++...|++++
T Consensus 451 ~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~ 530 (889)
T KOG4658|consen 451 TAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSL 530 (889)
T ss_pred chhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEE
Confidence 88999999999999999999863 37899999999999999999998888888888877777888999999999999
Q ss_pred cccccccccCCCCCCCccEEEcccccc-cccccchHhhcCCCCcEEEeecCCCCccCCccccCCCCCCeeeccCCCCccc
Q 036236 459 MQNQIETLSEVPTCPHLLTLFLDFNQE-LEMIADGFFQFMPSLKVLKISNCGNIFQLPVGMSKLGSLELLDISHTFIKEL 537 (557)
Q Consensus 459 ~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~i~~L~~L~~L~l~~n~l~~l 537 (557)
.+|.+..++....+++|++|.+..|.. +..++..||..|+.|++||||+|..+++||++|++|-+|+||+|+++.|+.|
T Consensus 531 ~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~L 610 (889)
T KOG4658|consen 531 MNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHL 610 (889)
T ss_pred eccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcccc
Confidence 999999999999999999999999973 7788888899999999999999989999999999999999999999999999
Q ss_pred ChHHHhHhhhhhcCCCC
Q 036236 538 PEELKKLLEAIQRAPRP 554 (557)
Q Consensus 538 P~~i~~L~~L~~L~~~~ 554 (557)
|.++++|++|.+|++..
T Consensus 611 P~~l~~Lk~L~~Lnl~~ 627 (889)
T KOG4658|consen 611 PSGLGNLKKLIYLNLEV 627 (889)
T ss_pred chHHHHHHhhheecccc
Confidence 99999999999999864
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.4e-50 Score=461.83 Aligned_cols=431 Identities=22% Similarity=0.308 Sum_probs=303.6
Q ss_pred CcccchhHHHHHHHHHHhc-cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEe---CCc-----------
Q 036236 90 PTIVGLQSQLEQVWRCLVV-EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVV---SKD----------- 154 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~-~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~---~~~----------- 154 (557)
+.+|||+++++++..+|.. .+.+++|+|+||||+||||||+++|+.. ...|++.+|+.. +..
T Consensus 184 ~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l---~~~F~g~vfv~~~~v~~~~~~~~~~~~~~ 260 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL---SRQFQSSVFIDRAFISKSMEIYSSANPDD 260 (1153)
T ss_pred ccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH---hhcCCeEEEeeccccccchhhcccccccc
Confidence 5699999999999998863 4678999999999999999999999987 568888888742 111
Q ss_pred cC-HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCccccccccccCCCCCCCCcEEEEeeCCh
Q 036236 155 LR-LEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWERVDLTKVGVPLPGPQNTTSKVVFTTRSI 233 (557)
Q Consensus 155 ~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~s~iliTtR~~ 233 (557)
.. ...++.+++..+..... ..... ...+++.++++|+||||||||+...++.+.......+.| ++||||||+.
T Consensus 261 ~~~~~~l~~~~l~~il~~~~-~~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~G-srIIiTTrd~ 334 (1153)
T PLN03210 261 YNMKLHLQRAFLSEILDKKD-IKIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSG-SRIIVITKDK 334 (1153)
T ss_pred cchhHHHHHHHHHHHhCCCC-cccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCC-cEEEEEeCcH
Confidence 01 12344444444322111 01111 245678899999999999999988888876655444455 9999999999
Q ss_pred HHHhcccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHHHHHhccCCCHHHHHHHHH
Q 036236 234 DVCGSMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTIGRAMACKRTAEEWRHAVE 313 (557)
Q Consensus 234 ~v~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~~~~~~w~~~l~ 313 (557)
.++...+..+.|+++.|++++|++||+++|+... .+++++.+++++|+++|+|+||||+++|+.|+. ++..+|+.+++
T Consensus 335 ~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~-~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l~ 412 (1153)
T PLN03210 335 HFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKN-SPPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMDMLP 412 (1153)
T ss_pred HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHHH
Confidence 9988777788999999999999999999998765 345568899999999999999999999999997 58899999999
Q ss_pred HHHhcccccCCchhhHhhhHhhhhccCCCcchhHHHhhhccCCCCcccCHHHHHHHHHhcCCcccccchhHHHHHHHHHH
Q 036236 314 VLRRSASEFAGLGEKVYSLLKFSYDSLQNETIKSCFLYCCLYPEDYGILKWDLIDCWIGEGFLEQSDRLSAEYQGYYIVG 393 (557)
Q Consensus 314 ~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~~~l~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~l~ 393 (557)
.++... +..+..+|++||+.|+++..|.||+++|+|+.+..++ .+..|++.+..... ..++
T Consensus 413 ~L~~~~------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~~----------~~l~ 473 (1153)
T PLN03210 413 RLRNGL------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDVN----------IGLK 473 (1153)
T ss_pred HHHhCc------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCch----------hChH
Confidence 887643 2489999999999998756899999999999887554 46778777654321 1288
Q ss_pred HHHHhccccccCCCcEEeCHHHHHHHHHHhhhhc--cccceEEEEcC---------CC-------------cccC----C
Q 036236 394 TLVQACLLEELEDDKVKMHDVIRDMALWITSEIE--KEKRNFLVRAG---------AG-------------LKEA----P 445 (557)
Q Consensus 394 ~L~~~sll~~~~~~~~~mHdlv~~~a~~~~~~~~--~~~~~~~~~~~---------~~-------------~~~~----~ 445 (557)
.|+++||++.. .+++.|||++|+||++++.++. +.++.+++... .+ ..++ .
T Consensus 474 ~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~ 552 (1153)
T PLN03210 474 NLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHEN 552 (1153)
T ss_pred HHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHH
Confidence 99999999875 5689999999999999986542 11222332110 00 0000 0
Q ss_pred cccc-------------------------------cccceEEEccccccccccCCCCCCCccEEEcccccccccccchHh
Q 036236 446 AVKG-------------------------------WENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNQELEMIADGFF 494 (557)
Q Consensus 446 ~~~~-------------------------------~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~ 494 (557)
.+.. ..+++.|.+.++.+..+|....+.+|+.|++.+|. +..+|.+ +
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~-l~~L~~~-~ 630 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSK-LEKLWDG-V 630 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcc-ccccccc-c
Confidence 0001 12355555555555555555555666666666665 5555554 4
Q ss_pred hcCCCCcEEEeecCCCCccCCccccCCCCCCeeeccCC-CCcccChHHHhHhhhhhcCCCC
Q 036236 495 QFMPSLKVLKISNCGNIFQLPVGMSKLGSLELLDISHT-FIKELPEELKKLLEAIQRAPRP 554 (557)
Q Consensus 495 ~~l~~L~~L~Ls~~~~~~~lP~~i~~L~~L~~L~l~~n-~l~~lP~~i~~L~~L~~L~~~~ 554 (557)
..+++|++|+|++|..++.+| .++.+++|++|+|++| .+..+|.+|++|++|+.|++++
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~ 690 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSR 690 (1153)
T ss_pred ccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCC
Confidence 555666666666554455555 3555555666666554 3555555555555555555554
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2.1e-46 Score=367.98 Aligned_cols=282 Identities=37% Similarity=0.645 Sum_probs=230.2
Q ss_pred hhHHHHHHHHHHhc-cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCC
Q 036236 95 LQSQLEQVWRCLVV-EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDD 173 (557)
Q Consensus 95 r~~~~~~l~~~L~~-~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 173 (557)
||.++++|.+.|.. +++.++|+|+|+||+||||||.+++++. ....+|+.++|+.++...+...++..|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~-~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDL-RIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHH-HHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccc-cccccccccccccccccccccccccccccccccccc
Confidence 78999999999994 3789999999999999999999999995 357889999999999999999999999999988754
Q ss_pred CC-CCCCHHHHHHHHHHHhcCCcEEEEEccCCCccccccccccCCCCCCCCcEEEEeeCChHHHhcccC-CCceecCCCC
Q 036236 174 SW-KSKSVEEKAVDIFRSLREKRFVLLLDDIWERVDLTKVGVPLPGPQNTTSKVVFTTRSIDVCGSMES-HRKFPVACLS 251 (557)
Q Consensus 174 ~~-~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~s~iliTtR~~~v~~~~~~-~~~~~l~~L~ 251 (557)
.. ...+.++....+.+.|.++++||||||||+...|+.+...++....+ ++||||||+..++..... ...|++++|+
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~-~kilvTTR~~~v~~~~~~~~~~~~l~~L~ 158 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSG-SKILVTTRDRSVAGSLGGTDKVIELEPLS 158 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS--EEEEEESCGGGGTTHHSCEEEEECSS--
T ss_pred ccccccccccccccchhhhccccceeeeeeeccccccccccccccccccc-ccccccccccccccccccccccccccccc
Confidence 43 56778889999999999999999999999999998888777766556 999999999988776654 6789999999
Q ss_pred HHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHHHHHhccCCCHHHHHHHHHHHHhcccccCCchhhHhh
Q 036236 252 EEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTIGRAMACKRTAEEWRHAVEVLRRSASEFAGLGEKVYS 331 (557)
Q Consensus 252 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~ 331 (557)
.+||++||.+.++.......+...+.+++|+++|+|+||||+++|++|+.+.+..+|+.+++.+.....+..+....++.
T Consensus 159 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~ 238 (287)
T PF00931_consen 159 EEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFS 238 (287)
T ss_dssp HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999876552233445578999999999999999999999976557788999999888776554445578999
Q ss_pred hHhhhhccCCCcchhHHHhhhccCCCCcccCHHHHHHHHHhcCCcccc
Q 036236 332 LLKFSYDSLQNETIKSCFLYCCLYPEDYGILKWDLIDCWIGEGFLEQS 379 (557)
Q Consensus 332 ~l~~sy~~L~~~~~k~~~l~~~~fp~~~~i~~~~li~~w~a~g~i~~~ 379 (557)
++.+||+.||+ ++|.||+|||+||+++.|+++.++++|+++|++...
T Consensus 239 ~l~~s~~~L~~-~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 239 ALELSYDSLPD-ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHSSHT-CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cceechhcCCc-cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 99999999999 899999999999999999999999999999999864
No 4
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.60 E-value=8.9e-14 Score=158.53 Aligned_cols=295 Identities=13% Similarity=0.148 Sum_probs=181.0
Q ss_pred CCCCcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCC-ccCHHHHHHHHH
Q 036236 87 PTEPTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSK-DLRLEKIQEDIG 165 (557)
Q Consensus 87 ~~~~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~ 165 (557)
+..+.+|-|..-.+.+. .....+++.|+|++|.||||++.++.... . .++|+++.. ..++..+...++
T Consensus 11 ~~~~~~~~R~rl~~~l~----~~~~~~~~~v~apaG~GKTtl~~~~~~~~----~---~~~w~~l~~~d~~~~~f~~~l~ 79 (903)
T PRK04841 11 VRLHNTVVRERLLAKLS----GANNYRLVLVTSPAGYGKTTLISQWAAGK----N---NLGWYSLDESDNQPERFASYLI 79 (903)
T ss_pred CCccccCcchHHHHHHh----cccCCCeEEEECCCCCCHHHHHHHHHHhC----C---CeEEEecCcccCCHHHHHHHHH
Confidence 33457788875555543 23467899999999999999999988643 1 589999964 446666767777
Q ss_pred HHhCCCCCC-----------CCCCCHHHHHHHHHHHhc--CCcEEEEEccCCCcc--ccccccccCCCCCCCCcEEEEee
Q 036236 166 KKIGLFDDS-----------WKSKSVEEKAVDIFRSLR--EKRFVLLLDDIWERV--DLTKVGVPLPGPQNTTSKVVFTT 230 (557)
Q Consensus 166 ~~l~~~~~~-----------~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~~~s~iliTt 230 (557)
..++..... ....+.......+...+. +.+++|||||+.... ....+...+.....++.++||||
T Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~s 159 (903)
T PRK04841 80 AALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLS 159 (903)
T ss_pred HHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEe
Confidence 766421111 011223334444444443 679999999995432 22222222222223337888999
Q ss_pred CChHHH---hcccCCCceecC----CCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHHHHHhccCC
Q 036236 231 RSIDVC---GSMESHRKFPVA----CLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTIGRAMACKR 303 (557)
Q Consensus 231 R~~~v~---~~~~~~~~~~l~----~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~~ 303 (557)
|...-. .........++. +|+.+|+.++|....+... + .+...+|.+.|+|+|+++..++..+....
T Consensus 160 R~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~---~---~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~ 233 (903)
T PRK04841 160 RNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI---E---AAESSRLCDDVEGWATALQLIALSARQNN 233 (903)
T ss_pred CCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC---C---HHHHHHHHHHhCChHHHHHHHHHHHhhCC
Confidence 974211 111112244555 9999999999988765432 1 24578999999999999999887765432
Q ss_pred CHHHHHHHHHHHHhcccccCCchhhHhhhHhhh-hccCCCcchhHHHhhhccCCCCcccCHHHHHHHHHhcCCcccccch
Q 036236 304 TAEEWRHAVEVLRRSASEFAGLGEKVYSLLKFS-YDSLQNETIKSCFLYCCLYPEDYGILKWDLIDCWIGEGFLEQSDRL 382 (557)
Q Consensus 304 ~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~s-y~~L~~~~~k~~~l~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~ 382 (557)
... ......+.. .....+...+.-. ++.||+ +.+.++...|+++ . ++.. +.. .+..
T Consensus 234 ~~~--~~~~~~~~~------~~~~~~~~~l~~~v~~~l~~-~~~~~l~~~a~~~-~--~~~~-l~~-----~l~~----- 290 (903)
T PRK04841 234 SSL--HDSARRLAG------INASHLSDYLVEEVLDNVDL-ETRHFLLRCSVLR-S--MNDA-LIV-----RVTG----- 290 (903)
T ss_pred Cch--hhhhHhhcC------CCchhHHHHHHHHHHhcCCH-HHHHHHHHhcccc-c--CCHH-HHH-----HHcC-----
Confidence 100 010111100 0012455544433 789999 8999999999987 2 3322 222 1111
Q ss_pred hHHHHHHHHHHHHHHhccccc-c--CCCcEEeCHHHHHHHHHHh
Q 036236 383 SAEYQGYYIVGTLVQACLLEE-L--EDDKVKMHDVIRDMALWIT 423 (557)
Q Consensus 383 ~~~~~~~~~l~~L~~~sll~~-~--~~~~~~mHdlv~~~a~~~~ 423 (557)
...+...+++|.+.+++.. . +...|++|++++++.+.-.
T Consensus 291 --~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 291 --EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred --CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 1234567999999998653 2 3347999999999998664
No 5
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.49 E-value=1.1e-11 Score=127.40 Aligned_cols=297 Identities=14% Similarity=0.070 Sum_probs=168.6
Q ss_pred CCcccchhHHHHHHHHHHhc---cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHH
Q 036236 89 EPTIVGLQSQLEQVWRCLVV---EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIG 165 (557)
Q Consensus 89 ~~~~vGr~~~~~~l~~~L~~---~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 165 (557)
++.|+||++++++|...+.. +.....+.|+|++|+|||++++.++++.. .....-..+++.+....+...++..|+
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~-~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELE-EIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHH-HhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 36799999999999999853 23456789999999999999999999872 222223466777777777889999999
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHhc--CCcEEEEEccCCCcc------ccccccccCCCCCCCCcEEEEeeCChHHHh
Q 036236 166 KKIGLFDDSWKSKSVEEKAVDIFRSLR--EKRFVLLLDDIWERV------DLTKVGVPLPGPQNTTSKVVFTTRSIDVCG 237 (557)
Q Consensus 166 ~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~------~~~~l~~~l~~~~~~~s~iliTtR~~~v~~ 237 (557)
.++..........+..+....+.+.+. +++.+||||+++... .+..+...+.........+|.++....+..
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~ 187 (394)
T PRK00411 108 RQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLY 187 (394)
T ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchhh
Confidence 998652222233456667777777765 456899999997532 122222211111111133565655443322
Q ss_pred cc-------cCCCceecCCCCHHHHHHHHHHHhCCC---ccCCCccHHHHHHHHHHHhCCCchHHHHHHHHh--c--cC-
Q 036236 238 SM-------ESHRKFPVACLSEEDAWELFREKVGQE---TLESHHDIVELAQTVARECDGLPLALLTIGRAM--A--CK- 302 (557)
Q Consensus 238 ~~-------~~~~~~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l--~--~~- 302 (557)
.. -....+.+++++.++..+++..++... ..-.+..++.+++......|..+.|+.++-.+. + ..
T Consensus 188 ~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~ 267 (394)
T PRK00411 188 ILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGS 267 (394)
T ss_pred hcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC
Confidence 11 123467899999999999999876321 111222222223333222455677776654322 1 11
Q ss_pred --CCHHHHHHHHHHHHhcccccCCchhhHhhhHhhhhccCCCcchhHHHhhhccC-C-CCcccCHHHHHHH--HHhcCCc
Q 036236 303 --RTAEEWRHAVEVLRRSASEFAGLGEKVYSLLKFSYDSLQNETIKSCFLYCCLY-P-EDYGILKWDLIDC--WIGEGFL 376 (557)
Q Consensus 303 --~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~~~l~~~~f-p-~~~~i~~~~li~~--w~a~g~i 376 (557)
-+.+.+..+.+.+.. ....-.+..||. +.|..+..++.. . ....+....+... .+++.+-
T Consensus 268 ~~I~~~~v~~a~~~~~~-------------~~~~~~~~~L~~-~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~ 333 (394)
T PRK00411 268 RKVTEEDVRKAYEKSEI-------------VHLSEVLRTLPL-HEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELG 333 (394)
T ss_pred CCcCHHHHHHHHHHHHH-------------HHHHHHHhcCCH-HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcC
Confidence 245555555544311 223345678887 555544433322 1 1123444444432 1221110
Q ss_pred ccccchhHHHHHHHHHHHHHHhccccc
Q 036236 377 EQSDRLSAEYQGYYIVGTLVQACLLEE 403 (557)
Q Consensus 377 ~~~~~~~~~~~~~~~l~~L~~~sll~~ 403 (557)
.. .........+++.|...++|..
T Consensus 334 ~~---~~~~~~~~~~l~~L~~~glI~~ 357 (394)
T PRK00411 334 YE---PRTHTRFYEYINKLDMLGIINT 357 (394)
T ss_pred CC---cCcHHHHHHHHHHHHhcCCeEE
Confidence 00 0112334567888888888875
No 6
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.44 E-value=1.1e-11 Score=129.68 Aligned_cols=294 Identities=16% Similarity=0.149 Sum_probs=191.3
Q ss_pred CCcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCc-cCHHHHHHHHHHH
Q 036236 89 EPTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKD-LRLEKIQEDIGKK 167 (557)
Q Consensus 89 ~~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~ 167 (557)
..+.|-|..- ++.|......+.+.|..|+|.|||||+.++.... ..-..+.|.++... .++..+.+.++..
T Consensus 18 ~~~~v~R~rL----~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~----~~~~~v~Wlslde~dndp~rF~~yLi~a 89 (894)
T COG2909 18 PDNYVVRPRL----LDRLRRANDYRLILISAPAGFGKTTLLAQWRELA----ADGAAVAWLSLDESDNDPARFLSYLIAA 89 (894)
T ss_pred cccccccHHH----HHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhc----CcccceeEeecCCccCCHHHHHHHHHHH
Confidence 4456777654 4445534578999999999999999999998743 34457999998764 5678888888888
Q ss_pred hCCCCCCC-----------CCCCHHHHHHHHHHHhcC--CcEEEEEccCCC--ccccc-cccccCCCCCCCCcEEEEeeC
Q 036236 168 IGLFDDSW-----------KSKSVEEKAVDIFRSLRE--KRFVLLLDDIWE--RVDLT-KVGVPLPGPQNTTSKVVFTTR 231 (557)
Q Consensus 168 l~~~~~~~-----------~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~--~~~~~-~l~~~l~~~~~~~s~iliTtR 231 (557)
++...+.. ...+...+...+...+.. ++.++||||..- ...+. .+...+.....+ -.+++|||
T Consensus 90 l~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~-l~lvv~SR 168 (894)
T COG2909 90 LQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPEN-LTLVVTSR 168 (894)
T ss_pred HHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCC-eEEEEEec
Confidence 86332221 233444555555555543 689999999742 12222 222222222233 89999999
Q ss_pred ChHHH---hcccCCCceecC----CCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHHHHHhccCCC
Q 036236 232 SIDVC---GSMESHRKFPVA----CLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTIGRAMACKRT 304 (557)
Q Consensus 232 ~~~v~---~~~~~~~~~~l~----~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~~~ 304 (557)
+..-+ ...-.+..++++ .|+.+|+.++|....+..- ...-.+.+.+..+|.+-|+..++=.++.+.+
T Consensus 169 ~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~L------d~~~~~~L~~~teGW~~al~L~aLa~~~~~~ 242 (894)
T COG2909 169 SRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPL------DAADLKALYDRTEGWAAALQLIALALRNNTS 242 (894)
T ss_pred cCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCC------ChHHHHHHHhhcccHHHHHHHHHHHccCCCc
Confidence 86432 211122334443 5899999999988764332 1245789999999999999999887774344
Q ss_pred HHHHHHHHHHHHhcccccCCchhhHhhh-HhhhhccCCCcchhHHHhhhccCCCCcccCHHHHHHHHHhcCCcccccchh
Q 036236 305 AEEWRHAVEVLRRSASEFAGLGEKVYSL-LKFSYDSLQNETIKSCFLYCCLYPEDYGILKWDLIDCWIGEGFLEQSDRLS 383 (557)
Q Consensus 305 ~~~w~~~l~~l~~~~~~~~~~~~~i~~~-l~~sy~~L~~~~~k~~~l~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~ 383 (557)
.+.-...+. +.+..+... ..--++.||+ ++|.+++.||+++.= -..|+. ..+
T Consensus 243 ~~q~~~~Ls----------G~~~~l~dYL~eeVld~Lp~-~l~~FLl~~svl~~f----~~eL~~------------~Lt 295 (894)
T COG2909 243 AEQSLRGLS----------GAASHLSDYLVEEVLDRLPP-ELRDFLLQTSVLSRF----NDELCN------------ALT 295 (894)
T ss_pred HHHHhhhcc----------chHHHHHHHHHHHHHhcCCH-HHHHHHHHHHhHHHh----hHHHHH------------HHh
Confidence 433222111 111223322 2234678999 899999999998641 112222 124
Q ss_pred HHHHHHHHHHHHHHhcccccc---CCCcEEeCHHHHHHHHHHhh
Q 036236 384 AEYQGYYIVGTLVQACLLEEL---EDDKVKMHDVIRDMALWITS 424 (557)
Q Consensus 384 ~~~~~~~~l~~L~~~sll~~~---~~~~~~mHdlv~~~a~~~~~ 424 (557)
.++.+..++++|.+++|+-.. ....|+.|+++.+|-+.-..
T Consensus 296 g~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~ 339 (894)
T COG2909 296 GEENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQ 339 (894)
T ss_pred cCCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhc
Confidence 456677789999999987532 57889999999999875543
No 7
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.40 E-value=1.5e-10 Score=117.72 Aligned_cols=297 Identities=14% Similarity=0.119 Sum_probs=169.8
Q ss_pred CcccchhHHHHHHHHHHhc---cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCc---ceEEEEEeCCccCHHHHHHH
Q 036236 90 PTIVGLQSQLEQVWRCLVV---EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINF---DCVIWVVVSKDLRLEKIQED 163 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~---~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f---~~~~wv~~~~~~~~~~~~~~ 163 (557)
+.|+||++++++|...|.. +.....+.|+|++|+|||++++.+++......... -..+|+.+....+...++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 4799999999999999873 34556899999999999999999998762111111 24677777777777889999
Q ss_pred HHHHhC---CCCCCCCCCCHHHHHHHHHHHhc--CCcEEEEEccCCCcc-c----ccccccc--CCCCCCCCcEEEEeeC
Q 036236 164 IGKKIG---LFDDSWKSKSVEEKAVDIFRSLR--EKRFVLLLDDIWERV-D----LTKVGVP--LPGPQNTTSKVVFTTR 231 (557)
Q Consensus 164 i~~~l~---~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~-~----~~~l~~~--l~~~~~~~s~iliTtR 231 (557)
|+.++. ...+. ...+..+....+.+.+. +++++||||+++... . +..+... .....+....+|.++.
T Consensus 95 i~~~l~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n 173 (365)
T TIGR02928 95 LANQLRGSGEEVPT-TGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISN 173 (365)
T ss_pred HHHHHhhcCCCCCC-CCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEEC
Confidence 999883 32111 22344555566666663 567899999997541 1 1121111 0111112134555555
Q ss_pred ChHHHhcc-------cCCCceecCCCCHHHHHHHHHHHhCC--CccCCCccHHHHHHHHHHHhCCCchHH-HHHHHHh--
Q 036236 232 SIDVCGSM-------ESHRKFPVACLSEEDAWELFREKVGQ--ETLESHHDIVELAQTVARECDGLPLAL-LTIGRAM-- 299 (557)
Q Consensus 232 ~~~v~~~~-------~~~~~~~l~~L~~~ea~~L~~~~~~~--~~~~~~~~~~~~~~~i~~~~~G~PLai-~~~~~~l-- 299 (557)
.......+ -....+.+++++.++..+++..++.. ......++..+.+..++..+.|.|-.+ ..+-.+.
T Consensus 174 ~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~ 253 (365)
T TIGR02928 174 DLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEI 253 (365)
T ss_pred CcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 44321111 11246889999999999999988642 111122333345556777778888543 3222111
Q ss_pred c--c---CCCHHHHHHHHHHHHhcccccCCchhhHhhhHhhhhccCCCcchhHHHhhhccC--CCCcccCHHHHHHHHH-
Q 036236 300 A--C---KRTAEEWRHAVEVLRRSASEFAGLGEKVYSLLKFSYDSLQNETIKSCFLYCCLY--PEDYGILKWDLIDCWI- 371 (557)
Q Consensus 300 ~--~---~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~~~l~~~~f--p~~~~i~~~~li~~w~- 371 (557)
. . .-+.+....+.+.+.. ....-++..||. +.+..+..+... .++..+....+...+-
T Consensus 254 a~~~~~~~it~~~v~~a~~~~~~-------------~~~~~~i~~l~~-~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~ 319 (365)
T TIGR02928 254 AEREGAERVTEDHVEKAQEKIEK-------------DRLLELIRGLPT-HSKLVLLAIANLAANDEDPFRTGEVYEVYKE 319 (365)
T ss_pred HHHcCCCCCCHHHHHHHHHHHHH-------------HHHHHHHHcCCH-HHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 1 1 1344455544443321 222345667877 555444443321 1334456666655331
Q ss_pred -hcCCcccccchhHHHHHHHHHHHHHHhcccccc
Q 036236 372 -GEGFLEQSDRLSAEYQGYYIVGTLVQACLLEEL 404 (557)
Q Consensus 372 -a~g~i~~~~~~~~~~~~~~~l~~L~~~sll~~~ 404 (557)
++.+ .. ..........+++.|...|++...
T Consensus 320 ~~~~~-~~--~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 320 VCEDI-GV--DPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHhc-CC--CCCcHHHHHHHHHHHHhcCCeEEE
Confidence 1211 10 112335566678888888888754
No 8
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.38 E-value=2.7e-12 Score=121.85 Aligned_cols=196 Identities=18% Similarity=0.230 Sum_probs=102.9
Q ss_pred ccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHH---------
Q 036236 92 IVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQE--------- 162 (557)
Q Consensus 92 ~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~--------- 162 (557)
|+||++++++|.+++. .+....+.|+|+.|+|||+|++.+.+... ...+ .++|+..........+..
T Consensus 1 F~gR~~el~~l~~~l~-~~~~~~~~l~G~rg~GKTsLl~~~~~~~~--~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~ 76 (234)
T PF01637_consen 1 FFGREKELEKLKELLE-SGPSQHILLYGPRGSGKTSLLKEFINELK--EKGY-KVVYIDFLEESNESSLRSFIEETSLAD 76 (234)
T ss_dssp S-S-HHHHHHHHHCHH-H--SSEEEEEESTTSSHHHHHHHHHHHCT----EE-CCCHHCCTTBSHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHH-hhcCcEEEEEcCCcCCHHHHHHHHHHHhh--hcCC-cEEEEecccchhhhHHHHHHHHHHHHH
Confidence 7999999999999988 55678999999999999999999999871 1122 344444333322211111
Q ss_pred HHHHHhCC--CCCC------CCCCCHHHHHHHHHHHhc--CCcEEEEEccCCCcc-cc-------ccccccCCC--CCCC
Q 036236 163 DIGKKIGL--FDDS------WKSKSVEEKAVDIFRSLR--EKRFVLLLDDIWERV-DL-------TKVGVPLPG--PQNT 222 (557)
Q Consensus 163 ~i~~~l~~--~~~~------~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~-~~-------~~l~~~l~~--~~~~ 222 (557)
.+...+.. +... ............+.+.+. +++++||+||+.... .. ..+...+.. ....
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 156 (234)
T PF01637_consen 77 ELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQN 156 (234)
T ss_dssp HCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TT
T ss_pred HHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCC
Confidence 11111211 1000 011222333444444443 345999999996544 11 111111111 1222
Q ss_pred CcEEEEeeCChHHHhc--------ccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHH
Q 036236 223 TSKVVFTTRSIDVCGS--------MESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLT 294 (557)
Q Consensus 223 ~s~iliTtR~~~v~~~--------~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~ 294 (557)
..+++++....+... .+....+.+++|+.+++++++...+... ... +.-.+..++|+..+||+|..|..
T Consensus 157 -~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 157 -VSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp -EEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHHH
T ss_pred -ceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 445555555544332 1233458999999999999999976443 111 12245679999999999998864
No 9
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.37 E-value=1.9e-10 Score=111.58 Aligned_cols=182 Identities=13% Similarity=0.165 Sum_probs=112.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFR 189 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 189 (557)
....++.|+|++|+||||+++.+++... . ... ..+|+ +....+..+++..|+..++.+... .+.......+..
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~-~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~---~~~~~~~~~l~~ 113 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLD-Q-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETEG---RDKAALLRELED 113 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcC-C-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC---CCHHHHHHHHHH
Confidence 4456899999999999999999999872 1 111 22333 333456778999999998875422 222233333333
Q ss_pred H-----hcCCcEEEEEccCCCcc--ccccccccC--CCCCCCCcEEEEeeCChHHHhccc----------CCCceecCCC
Q 036236 190 S-----LREKRFVLLLDDIWERV--DLTKVGVPL--PGPQNTTSKVVFTTRSIDVCGSME----------SHRKFPVACL 250 (557)
Q Consensus 190 ~-----l~~k~~LlVlDdv~~~~--~~~~l~~~l--~~~~~~~s~iliTtR~~~v~~~~~----------~~~~~~l~~L 250 (557)
. ..+++.++|+||++... .++.+.... .........|++|... .....+. ....+++++|
T Consensus 114 ~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~-~~~~~l~~~~~~~l~~r~~~~~~l~~l 192 (269)
T TIGR03015 114 FLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQP-EFRETLQSPQLQQLRQRIIASCHLGPL 192 (269)
T ss_pred HHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCH-HHHHHHcCchhHHHHhheeeeeeCCCC
Confidence 2 36788999999997643 233332111 1111111344555543 2221111 1335789999
Q ss_pred CHHHHHHHHHHHhCCCccCC-CccHHHHHHHHHHHhCCCchHHHHHHHHh
Q 036236 251 SEEDAWELFREKVGQETLES-HHDIVELAQTVARECDGLPLALLTIGRAM 299 (557)
Q Consensus 251 ~~~ea~~L~~~~~~~~~~~~-~~~~~~~~~~i~~~~~G~PLai~~~~~~l 299 (557)
+.+|..+++...+....... ..-..+..+.|++.++|.|..|..++..+
T Consensus 193 ~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 193 DREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred CHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99999999988764332111 11224788999999999999999988765
No 10
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.28 E-value=8.4e-11 Score=129.70 Aligned_cols=309 Identities=15% Similarity=0.191 Sum_probs=177.9
Q ss_pred cccchhHHHHHHHHHHhc--cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccC---HHHHHHHHH
Q 036236 91 TIVGLQSQLEQVWRCLVV--EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLR---LEKIQEDIG 165 (557)
Q Consensus 91 ~~vGr~~~~~~l~~~L~~--~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~---~~~~~~~i~ 165 (557)
.++||+.+++.|...+.. .+...++.|.|.+|||||+++++|.+...+.+..|-...+-....... ..+.++++.
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~ 80 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLM 80 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHH
Confidence 379999999999999884 467789999999999999999999998843323322222212222221 223333333
Q ss_pred HHh-------------------CCCCCC--------------------CCCCCHHHHH-----HHHHHHh-cCCcEEEEE
Q 036236 166 KKI-------------------GLFDDS--------------------WKSKSVEEKA-----VDIFRSL-REKRFVLLL 200 (557)
Q Consensus 166 ~~l-------------------~~~~~~--------------------~~~~~~~~~~-----~~l~~~l-~~k~~LlVl 200 (557)
.++ +..... ..+....... ..+.... +.++.++|+
T Consensus 81 ~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~l 160 (849)
T COG3899 81 GQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVL 160 (849)
T ss_pred HHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence 333 111100 0011111111 1122222 456999999
Q ss_pred ccC-CCcc-ccccccccCCCCC---CCCcEEE--EeeCCh--HHHhcccCCCceecCCCCHHHHHHHHHHHhCCCccCCC
Q 036236 201 DDI-WERV-DLTKVGVPLPGPQ---NTTSKVV--FTTRSI--DVCGSMESHRKFPVACLSEEDAWELFREKVGQETLESH 271 (557)
Q Consensus 201 Ddv-~~~~-~~~~l~~~l~~~~---~~~s~il--iTtR~~--~v~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~ 271 (557)
||+ |-+. .+.-+........ .....|. .|.+.. ...........+.|.||+..+...+.....+...
T Consensus 161 eDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~---- 236 (849)
T COG3899 161 EDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK---- 236 (849)
T ss_pred ecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc----
Confidence 999 6432 2222111111100 0001222 233321 2233334557899999999999999999987643
Q ss_pred ccHHHHHHHHHHHhCCCchHHHHHHHHhccC------CCHHHHHHHHHHHHhcccccCCchhhHhhhHhhhhccCCCcch
Q 036236 272 HDIVELAQTVARECDGLPLALLTIGRAMACK------RTAEEWRHAVEVLRRSASEFAGLGEKVYSLLKFSYDSLQNETI 345 (557)
Q Consensus 272 ~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~------~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~ 345 (557)
....+....|+++..|+|+.+..+-..+... .+...|..-...+.. .... +.+...+..-.+.||+ ..
T Consensus 237 ~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~----~~~~-~~vv~~l~~rl~kL~~-~t 310 (849)
T COG3899 237 LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGI----LATT-DAVVEFLAARLQKLPG-TT 310 (849)
T ss_pred cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCC----chhh-HHHHHHHHHHHhcCCH-HH
Confidence 2223678899999999999999998888763 344555543322222 1122 2466678888999999 89
Q ss_pred hHHHhhhccCCCCcccCHHHHHHHHHhcCCcccccchhHHHHHHHHHHHHHHhcccccc-------CCCcE---EeCHHH
Q 036236 346 KSCFLYCCLYPEDYGILKWDLIDCWIGEGFLEQSDRLSAEYQGYYIVGTLVQACLLEEL-------EDDKV---KMHDVI 415 (557)
Q Consensus 346 k~~~l~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~l~~L~~~sll~~~-------~~~~~---~mHdlv 415 (557)
+..+...|++...|+ ...|...+- ......+...++.|....++-.+ ..... ..|+.+
T Consensus 311 ~~Vl~~AA~iG~~F~--l~~La~l~~----------~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~v 378 (849)
T COG3899 311 REVLKAAACIGNRFD--LDTLAALAE----------DSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRV 378 (849)
T ss_pred HHHHHHHHHhCccCC--HHHHHHHHh----------hchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHH
Confidence 999999999976655 444444331 12334444445555555444321 11122 568888
Q ss_pred HHHHHH
Q 036236 416 RDMALW 421 (557)
Q Consensus 416 ~~~a~~ 421 (557)
++.|-.
T Consensus 379 qqaaY~ 384 (849)
T COG3899 379 QQAAYN 384 (849)
T ss_pred HHHHhc
Confidence 877743
No 11
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.28 E-value=4.5e-11 Score=119.05 Aligned_cols=274 Identities=15% Similarity=0.108 Sum_probs=147.5
Q ss_pred CcccchhHHHHHHHHHHhc----cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHH
Q 036236 90 PTIVGLQSQLEQVWRCLVV----EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIG 165 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~----~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 165 (557)
..|+|+++.++.+..++.. ......+.|+|++|+|||++|+.+++.. . ..+ .++..+ .......+..++
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l-~--~~~---~~~~~~-~~~~~~~l~~~l 97 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM-G--VNI---RITSGP-ALEKPGDLAAIL 97 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh-C--CCe---EEEecc-cccChHHHHHHH
Confidence 5799999999998887762 2345688999999999999999999987 2 221 112111 111112223333
Q ss_pred HHhCCCC----CCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCccccccccccCCCCCCCCcEEEEeeCChHHHhccc-
Q 036236 166 KKIGLFD----DSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWERVDLTKVGVPLPGPQNTTSKVVFTTRSIDVCGSME- 240 (557)
Q Consensus 166 ~~l~~~~----~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~s~iliTtR~~~v~~~~~- 240 (557)
..+.... ++....+ ....+.+...+.+.+..+|+|+..+..... ..++. . +-|..|++...+...+.
T Consensus 98 ~~l~~~~vl~IDEi~~l~-~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~---~~l~~---~-~li~at~~~~~l~~~L~s 169 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLS-PVVEEILYPAMEDFRLDIMIGKGPAARSIR---LDLPP---F-TLIGATTRAGLLTSPLRD 169 (328)
T ss_pred HhcccCCEEEEecHhhcc-hHHHHHHHHHHHhcceeeeeccCcccccee---ecCCC---c-eEEeecCCcccCCHHHHH
Confidence 3332111 0000000 112223444555566666666653332221 11221 2 45556666443322110
Q ss_pred -CCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHHHHHhccCCCHHHHHHHHHHHHhcc
Q 036236 241 -SHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTIGRAMACKRTAEEWRHAVEVLRRSA 319 (557)
Q Consensus 241 -~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~~~~~~w~~~l~~l~~~~ 319 (557)
....+.+++++.++..+++.+.+.......+ .+.+..|++.|+|.|-.+..+...+. .|.... ....
T Consensus 170 Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~---~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~---~~~~ 237 (328)
T PRK00080 170 RFGIVQRLEFYTVEELEKIVKRSARILGVEID---EEGALEIARRSRGTPRIANRLLRRVR------DFAQVK---GDGV 237 (328)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHc---CCCC
Confidence 1346899999999999999998776543332 35788999999999976555544321 121100 0000
Q ss_pred cccCCchhhHhhhHhhhhccCCCcchhHHHh-hhccCCCCcccCHHHHHHHHHhcCCcccccchhHHHHHHHHHH-HHHH
Q 036236 320 SEFAGLGEKVYSLLKFSYDSLQNETIKSCFL-YCCLYPEDYGILKWDLIDCWIGEGFLEQSDRLSAEYQGYYIVG-TLVQ 397 (557)
Q Consensus 320 ~~~~~~~~~i~~~l~~sy~~L~~~~~k~~~l-~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~l~-~L~~ 397 (557)
.. ...-......+...+..|++ ..+..+. ....|+.+ .+..+.+.... . .....++..++ .|++
T Consensus 238 I~-~~~v~~~l~~~~~~~~~l~~-~~~~~l~~~~~~~~~~-~~~~~~~a~~l------g-----~~~~~~~~~~e~~Li~ 303 (328)
T PRK00080 238 IT-KEIADKALDMLGVDELGLDE-MDRKYLRTIIEKFGGG-PVGLDTLAAAL------G-----EERDTIEDVYEPYLIQ 303 (328)
T ss_pred CC-HHHHHHHHHHhCCCcCCCCH-HHHHHHHHHHHHcCCC-ceeHHHHHHHH------C-----CCcchHHHHhhHHHHH
Confidence 00 00012333445666777877 4455554 66667655 45554443322 1 11223333455 7999
Q ss_pred hcccccc
Q 036236 398 ACLLEEL 404 (557)
Q Consensus 398 ~sll~~~ 404 (557)
.+||+..
T Consensus 304 ~~li~~~ 310 (328)
T PRK00080 304 QGFIQRT 310 (328)
T ss_pred cCCcccC
Confidence 9999755
No 12
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.27 E-value=1e-12 Score=111.08 Aligned_cols=108 Identities=22% Similarity=0.356 Sum_probs=74.0
Q ss_pred ccccccceEEEccccccccccCC-CCCCCccEEEccccccc-ccccchHhhcCCCCcEEEeecCCCCccCCccccCCCCC
Q 036236 447 VKGWENVRRLSLMQNQIETLSEV-PTCPHLLTLFLDFNQEL-EMIADGFFQFMPSLKVLKISNCGNIFQLPVGMSKLGSL 524 (557)
Q Consensus 447 ~~~~~~l~~l~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~-~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~i~~L~~L 524 (557)
+++++++++|.+.-|.+..+|.. +.++-|.+|+|.+|+.. ..+|.. |-.|.-||.|.|++| .++-+|..+|+|++|
T Consensus 75 issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgn-ff~m~tlralyl~dn-dfe~lp~dvg~lt~l 152 (264)
T KOG0617|consen 75 ISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGN-FFYMTTLRALYLGDN-DFEILPPDVGKLTNL 152 (264)
T ss_pred hhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcc-hhHHHHHHHHHhcCC-CcccCChhhhhhcce
Confidence 44455555555555555544433 55555555655555421 234444 223555556666666 677789999999999
Q ss_pred CeeeccCCCCcccChHHHhHhhhhhcCCCCCC
Q 036236 525 ELLDISHTFIKELPEELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 525 ~~L~l~~n~l~~lP~~i~~L~~L~~L~~~~~~ 556 (557)
+.|.++.|.+-.||.+++.|+.|+.|+.-+++
T Consensus 153 qil~lrdndll~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 153 QILSLRDNDLLSLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred eEEeeccCchhhCcHHHHHHHHHHHHhcccce
Confidence 99999999999999999999999998887764
No 13
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.27 E-value=1.4e-10 Score=114.63 Aligned_cols=274 Identities=18% Similarity=0.130 Sum_probs=147.9
Q ss_pred CcccchhHHHHHHHHHHhc----cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHH
Q 036236 90 PTIVGLQSQLEQVWRCLVV----EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIG 165 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~----~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 165 (557)
..|||++..+++|..++.. .+....+.|+|++|+|||+||+.+++.. ...+ ..+..+....... +...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~---~~~~---~~~~~~~~~~~~~-l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM---GVNL---KITSGPALEKPGD-LAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCCE---EEeccchhcCchh-HHHHH
Confidence 4689999999999988863 2345678899999999999999999987 2222 1121111111112 22222
Q ss_pred HHhCCCC----CCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCccccccccccCCCCCCCCcEEEEeeCChHHHhcc-c
Q 036236 166 KKIGLFD----DSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWERVDLTKVGVPLPGPQNTTSKVVFTTRSIDVCGSM-E 240 (557)
Q Consensus 166 ~~l~~~~----~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~s~iliTtR~~~v~~~~-~ 240 (557)
..++... ++....+ ......+...+.+.+..+|+++..+...+.. .++. . +-|..||+...+...+ .
T Consensus 77 ~~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~---~~~~---~-~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSARSVRL---DLPP---F-TLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HhcccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCccccceee---cCCC---e-EEEEecCCccccCHHHHh
Confidence 3332111 0001111 1223445566666667777777544433321 2221 2 5566677754332211 0
Q ss_pred -CCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHHHHHhccCCCHHHHHHHHHHHHhcc
Q 036236 241 -SHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTIGRAMACKRTAEEWRHAVEVLRRSA 319 (557)
Q Consensus 241 -~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~~~~~~w~~~l~~l~~~~ 319 (557)
....+.+++++.++..+++.+.+.......+ .+....|++.|+|.|-.+..++..+ |..+. ......
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~---~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~-~~~~~~ 216 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNVEIE---PEAALEIARRSRGTPRIANRLLRRV--------RDFAQ-VRGQKI 216 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcC---HHHHHHHHHHhCCCcchHHHHHHHH--------HHHHH-HcCCCC
Confidence 1346789999999999999988765432222 3567899999999997765554432 11100 000000
Q ss_pred cccCCchhhHhhhHhhhhccCCCcchhHHHh-hhccCCCCcccCHHHHHHHHHhcCCcccccchhHHHHHHHHHH-HHHH
Q 036236 320 SEFAGLGEKVYSLLKFSYDSLQNETIKSCFL-YCCLYPEDYGILKWDLIDCWIGEGFLEQSDRLSAEYQGYYIVG-TLVQ 397 (557)
Q Consensus 320 ~~~~~~~~~i~~~l~~sy~~L~~~~~k~~~l-~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~l~-~L~~ 397 (557)
... ..-......+...|..+++ ..+..+. .+..++.+ .+....+.... | .....+...++ .|++
T Consensus 217 it~-~~v~~~l~~l~~~~~~l~~-~~~~~L~al~~~~~~~-~~~~~~ia~~l---g--------~~~~~~~~~~e~~Li~ 282 (305)
T TIGR00635 217 INR-DIALKALEMLMIDELGLDE-IDRKLLSVLIEQFQGG-PVGLKTLAAAL---G--------EDADTIEDVYEPYLLQ 282 (305)
T ss_pred cCH-HHHHHHHHHhCCCCCCCCH-HHHHHHHHHHHHhCCC-cccHHHHHHHh---C--------CCcchHHHhhhHHHHH
Confidence 000 0001222225566777877 4555554 44556543 34444433322 1 11234455567 5999
Q ss_pred hcccccc
Q 036236 398 ACLLEEL 404 (557)
Q Consensus 398 ~sll~~~ 404 (557)
++||...
T Consensus 283 ~~li~~~ 289 (305)
T TIGR00635 283 IGFLQRT 289 (305)
T ss_pred cCCcccC
Confidence 9999754
No 14
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.17 E-value=3.6e-11 Score=106.30 Aligned_cols=121 Identities=26% Similarity=0.291 Sum_probs=60.6
Q ss_pred EEEcCCCcccCCccc-ccccceEEEccccccccccCCCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCc
Q 036236 434 LVRAGAGLKEAPAVK-GWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIF 512 (557)
Q Consensus 434 ~~~~~~~~~~~~~~~-~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~ 512 (557)
+...+..++.+..++ .+.+++.|++++|.+..++....+++|++|++++|. +..++..+...+++|+.|+|++| .|.
T Consensus 24 L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~L~L~~N-~I~ 101 (175)
T PF14580_consen 24 LNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQELYLSNN-KIS 101 (175)
T ss_dssp ------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS----
T ss_pred ccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCC-CCccccchHHhCCcCCEEECcCC-cCC
Confidence 445666677676666 477899999999999999988999999999999998 88887664457999999999999 887
Q ss_pred cCCc--cccCCCCCCeeeccCCCCcccCh----HHHhHhhhhhcCCCCCC
Q 036236 513 QLPV--GMSKLGSLELLDISHTFIKELPE----ELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 513 ~lP~--~i~~L~~L~~L~l~~n~l~~lP~----~i~~L~~L~~L~~~~~~ 556 (557)
.+-. .+..|++|++|+|.+|.+...|. -|..+++|+.||..+++
T Consensus 102 ~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 102 DLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred ChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEcc
Confidence 6643 67789999999999999987764 37899999999987664
No 15
>PF05729 NACHT: NACHT domain
Probab=99.15 E-value=3.2e-10 Score=101.29 Aligned_cols=143 Identities=20% Similarity=0.250 Sum_probs=89.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCC----cceEEEEEeCCccCHH---HHHHHHHHHhCCCCCCCCCCCHHHHHH
Q 036236 113 GIIGLYGMGGVGKTTLLTHINNKFLENPIN----FDCVIWVVVSKDLRLE---KIQEDIGKKIGLFDDSWKSKSVEEKAV 185 (557)
Q Consensus 113 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~----f~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~ 185 (557)
+++.|+|.+|+||||+++.++..... ... +..++|+..+...... .+...|..+..... .....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~~~~~--- 71 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAE-EEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI-----APIEE--- 71 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHh-cCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch-----hhhHH---
Confidence 58999999999999999999988732 222 4567777766544332 34444444433211 11111
Q ss_pred HHHHH-hcCCcEEEEEccCCCccc---------ccc-ccccCCCCCCCCcEEEEeeCChHH---HhcccCCCceecCCCC
Q 036236 186 DIFRS-LREKRFVLLLDDIWERVD---------LTK-VGVPLPGPQNTTSKVVFTTRSIDV---CGSMESHRKFPVACLS 251 (557)
Q Consensus 186 ~l~~~-l~~k~~LlVlDdv~~~~~---------~~~-l~~~l~~~~~~~s~iliTtR~~~v---~~~~~~~~~~~l~~L~ 251 (557)
.+... -+.++++||||++++... +.. +...+......+.+++||+|.... .........+.+.+|+
T Consensus 72 ~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~ 151 (166)
T PF05729_consen 72 LLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFS 151 (166)
T ss_pred HHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCC
Confidence 11112 256899999999975432 111 222222212233999999998665 3334445689999999
Q ss_pred HHHHHHHHHHHhC
Q 036236 252 EEDAWELFREKVG 264 (557)
Q Consensus 252 ~~ea~~L~~~~~~ 264 (557)
+++..+++.+++.
T Consensus 152 ~~~~~~~~~~~f~ 164 (166)
T PF05729_consen 152 EEDIKQYLRKYFS 164 (166)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988753
No 16
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.14 E-value=3.4e-12 Score=121.88 Aligned_cols=109 Identities=33% Similarity=0.459 Sum_probs=100.2
Q ss_pred CcccccccceEEEccccccccccCCCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCccccCCCCC
Q 036236 445 PAVKGWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVGMSKLGSL 524 (557)
Q Consensus 445 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~i~~L~~L 524 (557)
+.++.+.++..|++..|++..+|.++.|+.|..|++..|+ ++.+|.....++.+|.+|||.+| +++++|+.++.|.+|
T Consensus 200 ~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~-i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL 277 (565)
T KOG0472|consen 200 PELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQ-IEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSL 277 (565)
T ss_pred hhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccH-HHhhHHHHhcccccceeeecccc-ccccCchHHHHhhhh
Confidence 4677888999999999999999999999999999999998 99999987779999999999999 999999999999999
Q ss_pred CeeeccCCCCcccChHHHhHhhhhhc--CCCCCC
Q 036236 525 ELLDISHTFIKELPEELKKLLEAIQR--APRPDR 556 (557)
Q Consensus 525 ~~L~l~~n~l~~lP~~i~~L~~L~~L--~~~~~~ 556 (557)
++||+|+|.|+.+|.++++| .|++| .+||++
T Consensus 278 ~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 278 ERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred hhhcccCCccccCCcccccc-eeeehhhcCCchH
Confidence 99999999999999999999 89865 455544
No 17
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.10 E-value=6.7e-09 Score=100.35 Aligned_cols=218 Identities=20% Similarity=0.152 Sum_probs=123.0
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhC
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIG 169 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 169 (557)
.+++|-+..+.++ +. .+......+||++|+||||||+.+.... ...| ..++...+-.+-++.+
T Consensus 30 ~HLlg~~~~lrr~---v~-~~~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f-----~~~sAv~~gvkdlr~i----- 92 (436)
T COG2256 30 EHLLGEGKPLRRA---VE-AGHLHSMILWGPPGTGKTTLARLIAGTT---NAAF-----EALSAVTSGVKDLREI----- 92 (436)
T ss_pred HhhhCCCchHHHH---Hh-cCCCceeEEECCCCCCHHHHHHHHHHhh---CCce-----EEeccccccHHHHHHH-----
Confidence 4445554444444 33 6778888999999999999999999886 3444 2333322211112222
Q ss_pred CCCCCCCCCCHHHHHHHH-HHHhcCCcEEEEEccCCC--ccccccccccCCCCCCCCcEEEE--eeCChHH---HhcccC
Q 036236 170 LFDDSWKSKSVEEKAVDI-FRSLREKRFVLLLDDIWE--RVDLTKVGVPLPGPQNTTSKVVF--TTRSIDV---CGSMES 241 (557)
Q Consensus 170 ~~~~~~~~~~~~~~~~~l-~~~l~~k~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~s~ili--TtR~~~v---~~~~~~ 241 (557)
.+.- .....+++.+|++|.|.. ..+.+.+ ||.-.+| ..|+| ||.|+.. ....+.
T Consensus 93 --------------~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G-~iilIGATTENPsF~ln~ALlSR 154 (436)
T COG2256 93 --------------IEEARKNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENG-TIILIGATTENPSFELNPALLSR 154 (436)
T ss_pred --------------HHHHHHHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCC-eEEEEeccCCCCCeeecHHHhhh
Confidence 2222 123358899999999953 3334433 3333445 66665 7777654 223345
Q ss_pred CCceecCCCCHHHHHHHHHHHhCCCccCCC---c-cHHHHHHHHHHHhCCCchHHHHHH---HHhccCC---CHHHHHHH
Q 036236 242 HRKFPVACLSEEDAWELFREKVGQETLESH---H-DIVELAQTVARECDGLPLALLTIG---RAMACKR---TAEEWRHA 311 (557)
Q Consensus 242 ~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~---~-~~~~~~~~i~~~~~G~PLai~~~~---~~l~~~~---~~~~w~~~ 311 (557)
..++.+++|+.++-.+++.+.+........ . -.++....++..++|---++-... ..+.... ..+..+..
T Consensus 155 ~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~ 234 (436)
T COG2256 155 ARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEI 234 (436)
T ss_pred hheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHH
Confidence 678999999999999999984422111111 1 113567788999998754432222 2222211 22333333
Q ss_pred HHHHHhcccccCCchhhHhhhHhhhhccCCC
Q 036236 312 VEVLRRSASEFAGLGEKVYSLLKFSYDSLQN 342 (557)
Q Consensus 312 l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~ 342 (557)
+..-........+.+-++..+|.-|...-++
T Consensus 235 l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~ 265 (436)
T COG2256 235 LQRRSARFDKDGDAHYDLISALHKSVRGSDP 265 (436)
T ss_pred HhhhhhccCCCcchHHHHHHHHHHhhccCCc
Confidence 3221111122223334677888888888776
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.09 E-value=1.8e-11 Score=103.68 Aligned_cols=108 Identities=28% Similarity=0.427 Sum_probs=85.7
Q ss_pred CcccccccceEEEccccccccccCC-CCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCc--cCCccccCC
Q 036236 445 PAVKGWENVRRLSLMQNQIETLSEV-PTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIF--QLPVGMSKL 521 (557)
Q Consensus 445 ~~~~~~~~l~~l~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~--~lP~~i~~L 521 (557)
|.+..+.+++.|.+.+|+++++|.. +.+++|+.|++.-|. +..+|.+ |+.++.|.+|||++| ++. .+|..|..+
T Consensus 50 pnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprg-fgs~p~levldltyn-nl~e~~lpgnff~m 126 (264)
T KOG0617|consen 50 PNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRG-FGSFPALEVLDLTYN-NLNENSLPGNFFYM 126 (264)
T ss_pred CcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccc-cCCCchhhhhhcccc-ccccccCCcchhHH
Confidence 4556667788888888888777655 778888888888777 7777877 888888888888887 554 578888888
Q ss_pred CCCCeeeccCCCCcccChHHHhHhhhhhcCCCCC
Q 036236 522 GSLELLDISHTFIKELPEELKKLLEAIQRAPRPD 555 (557)
Q Consensus 522 ~~L~~L~l~~n~l~~lP~~i~~L~~L~~L~~~~~ 555 (557)
+.|+.|.|+.|.++.+|+++++|++|+.|.++.+
T Consensus 127 ~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn 160 (264)
T KOG0617|consen 127 TTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN 160 (264)
T ss_pred HHHHHHHhcCCCcccCChhhhhhcceeEEeeccC
Confidence 8888888888888888999999999988877765
No 19
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.07 E-value=2.2e-08 Score=106.10 Aligned_cols=208 Identities=14% Similarity=0.121 Sum_probs=120.1
Q ss_pred CCcccchhHHHHHHHHHHhc----cCCeeEEEEEcCCCCcHHHHHHHHHhhcccC--CCCcc--eEEEEEeCCccCHHHH
Q 036236 89 EPTIVGLQSQLEQVWRCLVV----EESVGIIGLYGMGGVGKTTLLTHINNKFLEN--PINFD--CVIWVVVSKDLRLEKI 160 (557)
Q Consensus 89 ~~~~vGr~~~~~~l~~~L~~----~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~--~~~f~--~~~wv~~~~~~~~~~~ 160 (557)
+..+.||++++++|...|.. .+...++.|+|++|+|||++++.|.+.+... ..... .+++|.+........+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 35678999999999998873 2334677899999999999999998876211 11122 3567777777778889
Q ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc---CCcEEEEEccCCCccc--cccccccCCCC-CCCCcEEEE--eeCC
Q 036236 161 QEDIGKKIGLFDDSWKSKSVEEKAVDIFRSLR---EKRFVLLLDDIWERVD--LTKVGVPLPGP-QNTTSKVVF--TTRS 232 (557)
Q Consensus 161 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~---~k~~LlVlDdv~~~~~--~~~l~~~l~~~-~~~~s~ili--TtR~ 232 (557)
+..|..++....+. ......+....+...+. +...+||||+++.... -+.+...+... ..+ ++|++ +|..
T Consensus 834 YqvI~qqL~g~~P~-~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~-SKLiLIGISNd 911 (1164)
T PTZ00112 834 YQVLYKQLFNKKPP-NALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKIN-SKLVLIAISNT 911 (1164)
T ss_pred HHHHHHHHcCCCCC-ccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccC-CeEEEEEecCc
Confidence 99999888433221 22333445555555542 2346999999964321 11121111111 122 44443 3332
Q ss_pred hH--------HHhcccCCCceecCCCCHHHHHHHHHHHhCCCccCCCc-cHHHHHHHHHHHhCCCchHHHHHHHHh
Q 036236 233 ID--------VCGSMESHRKFPVACLSEEDAWELFREKVGQETLESHH-DIVELAQTVARECDGLPLALLTIGRAM 299 (557)
Q Consensus 233 ~~--------v~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~-~~~~~~~~i~~~~~G~PLai~~~~~~l 299 (557)
.. +...+. ...+..+|++.++-.+++..++........+ .++-+|+.++...|..=.||.++-.+.
T Consensus 912 lDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 912 MDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred hhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 11 122222 2346779999999999999987642211222 222333333333344455665554433
No 20
>PRK06893 DNA replication initiation factor; Validated
Probab=99.03 E-value=2.2e-09 Score=100.88 Aligned_cols=155 Identities=15% Similarity=0.195 Sum_probs=93.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFR 189 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 189 (557)
...+.+.|+|++|+|||+|++.+++.... ....+.|+++.... .... .+.+
T Consensus 37 ~~~~~l~l~G~~G~GKThL~~ai~~~~~~---~~~~~~y~~~~~~~---~~~~-----------------------~~~~ 87 (229)
T PRK06893 37 LQQPFFYIWGGKSSGKSHLLKAVSNHYLL---NQRTAIYIPLSKSQ---YFSP-----------------------AVLE 87 (229)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHHH---cCCCeEEeeHHHhh---hhhH-----------------------HHHh
Confidence 34467899999999999999999998621 22345666553110 0000 1111
Q ss_pred HhcCCcEEEEEccCCCc---ccccc-ccccCCCCCCCCcEEE-EeeCC---------hHHHhcccCCCceecCCCCHHHH
Q 036236 190 SLREKRFVLLLDDIWER---VDLTK-VGVPLPGPQNTTSKVV-FTTRS---------IDVCGSMESHRKFPVACLSEEDA 255 (557)
Q Consensus 190 ~l~~k~~LlVlDdv~~~---~~~~~-l~~~l~~~~~~~s~il-iTtR~---------~~v~~~~~~~~~~~l~~L~~~ea 255 (557)
.+. +.-+|||||+|.. ..|+. +...+......+..+| +|+.. +.+.+.+.....+++++++.++.
T Consensus 88 ~~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~ 166 (229)
T PRK06893 88 NLE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQK 166 (229)
T ss_pred hcc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHH
Confidence 122 2348999999853 23332 2222222212124554 45543 34555556667899999999999
Q ss_pred HHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHHHH
Q 036236 256 WELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTIGR 297 (557)
Q Consensus 256 ~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~ 297 (557)
++++.+.+.......+ ++...-|++++.|..-.+..+-.
T Consensus 167 ~~iL~~~a~~~~l~l~---~~v~~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 167 IIVLQRNAYQRGIELS---DEVANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred HHHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHH
Confidence 9999988764443332 35778888888887766544443
No 21
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.96 E-value=3.6e-10 Score=99.92 Aligned_cols=109 Identities=28% Similarity=0.311 Sum_probs=41.3
Q ss_pred cCCcccccccceEEEccccccccccCCC-CCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCccc-cC
Q 036236 443 EAPAVKGWENVRRLSLMQNQIETLSEVP-TCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVGM-SK 520 (557)
Q Consensus 443 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~i-~~ 520 (557)
..+...+..+++.|++.+|.++.+.... .+.+|+.|++++|. +..++. +..++.|+.|++++| .|+.++..+ ..
T Consensus 11 ~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~-I~~l~~--l~~L~~L~~L~L~~N-~I~~i~~~l~~~ 86 (175)
T PF14580_consen 11 QIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQ-ITKLEG--LPGLPRLKTLDLSNN-RISSISEGLDKN 86 (175)
T ss_dssp -------------------------S--TT-TT--EEE-TTS---S--TT------TT--EEE--SS----S-CHHHHHH
T ss_pred cccccccccccccccccccccccccchhhhhcCCCEEECCCCC-CccccC--ccChhhhhhcccCCC-CCCccccchHHh
Confidence 3445556668999999999999887775 68999999999998 888875 888999999999999 999997666 46
Q ss_pred CCCCCeeeccCCCCcccC--hHHHhHhhhhhcCCCCC
Q 036236 521 LGSLELLDISHTFIKELP--EELKKLLEAIQRAPRPD 555 (557)
Q Consensus 521 L~~L~~L~l~~n~l~~lP--~~i~~L~~L~~L~~~~~ 555 (557)
+++|+.|+|++|+|..+- ..+..+++|+.|++.++
T Consensus 87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~N 123 (175)
T PF14580_consen 87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGN 123 (175)
T ss_dssp -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-
T ss_pred CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCC
Confidence 999999999999998764 35778889988777665
No 22
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.95 E-value=2.8e-10 Score=114.61 Aligned_cols=103 Identities=21% Similarity=0.327 Sum_probs=65.4
Q ss_pred cccccccceEEEccccccccccCC-CCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCccccCCCCC
Q 036236 446 AVKGWENVRRLSLMQNQIETLSEV-PTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVGMSKLGSL 524 (557)
Q Consensus 446 ~~~~~~~l~~l~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~i~~L~~L 524 (557)
.+-.++.+..|++++|++.+.|.. ..-+++-+|+|++|+ +.+||...|-+++-|-+||||+| .+..||+.+..|.+|
T Consensus 98 diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~L 175 (1255)
T KOG0444|consen 98 DIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSML 175 (1255)
T ss_pred hhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhh
Confidence 344556666677777777666544 555666677777766 66777666666777777777776 677777777777777
Q ss_pred CeeeccCCCCc-----ccChHHHhHhhhhhcCCCC
Q 036236 525 ELLDISHTFIK-----ELPEELKKLLEAIQRAPRP 554 (557)
Q Consensus 525 ~~L~l~~n~l~-----~lP~~i~~L~~L~~L~~~~ 554 (557)
++|+||+|.+. +|| .|++|+.|+.++
T Consensus 176 qtL~Ls~NPL~hfQLrQLP----smtsL~vLhms~ 206 (1255)
T KOG0444|consen 176 QTLKLSNNPLNHFQLRQLP----SMTSLSVLHMSN 206 (1255)
T ss_pred hhhhcCCChhhHHHHhcCc----cchhhhhhhccc
Confidence 77777776432 444 244555555443
No 23
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.93 E-value=7.2e-09 Score=97.73 Aligned_cols=172 Identities=13% Similarity=0.130 Sum_probs=102.7
Q ss_pred cccc--hhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHh
Q 036236 91 TIVG--LQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKI 168 (557)
Q Consensus 91 ~~vG--r~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 168 (557)
.|++ .+..++.+.+++. ......+.|+|++|+|||+||+.+++... ......++++++.-.. ..
T Consensus 16 ~~~~~~~~~~~~~l~~~~~-~~~~~~lll~G~~G~GKT~la~~~~~~~~---~~~~~~~~i~~~~~~~------~~---- 81 (226)
T TIGR03420 16 NFYAGGNAELLAALRQLAA-GKGDRFLYLWGESGSGKSHLLQAACAAAE---ERGKSAIYLPLAELAQ------AD---- 81 (226)
T ss_pred CcCcCCcHHHHHHHHHHHh-cCCCCeEEEECCCCCCHHHHHHHHHHHHH---hcCCcEEEEeHHHHHH------hH----
Confidence 4552 4456777777765 45678899999999999999999998862 1223455555433211 00
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCcc---c-cccccccCCCC-CCCCcEEEEeeCChH---------
Q 036236 169 GLFDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWERV---D-LTKVGVPLPGP-QNTTSKVVFTTRSID--------- 234 (557)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~-~~~l~~~l~~~-~~~~s~iliTtR~~~--------- 234 (557)
..+...+.+ .-+|||||++... . .+.+...+... ..+ ..+|+||+...
T Consensus 82 ----------------~~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~-~~iIits~~~~~~~~~~~~~ 143 (226)
T TIGR03420 82 ----------------PEVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAG-GRLLIAGRAAPAQLPLRLPD 143 (226)
T ss_pred ----------------HHHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcC-CeEEEECCCChHHCCcccHH
Confidence 011111222 2489999996432 2 22232222211 123 56888887432
Q ss_pred HHhcccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHHHH
Q 036236 235 VCGSMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTIGR 297 (557)
Q Consensus 235 v~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~ 297 (557)
+...+.....+++++++.++...++...+.......+ .+..+.|++.++|+|..+..+..
T Consensus 144 L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~---~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 144 LRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLP---DEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred HHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHH
Confidence 2222333467899999999999998876533221222 35667888889999987766543
No 24
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.90 E-value=8.4e-08 Score=98.55 Aligned_cols=176 Identities=19% Similarity=0.173 Sum_probs=104.4
Q ss_pred CcccchhHHHHH---HHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHH
Q 036236 90 PTIVGLQSQLEQ---VWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGK 166 (557)
Q Consensus 90 ~~~vGr~~~~~~---l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 166 (557)
..|||++..+.. +..++. .+....+.|+|++|+||||+|+.+++.. ...| +.++.......-.+.+.+
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~-~~~~~~ilL~GppGtGKTtLA~~ia~~~---~~~~-----~~l~a~~~~~~~ir~ii~ 82 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIE-AGRLSSMILWGPPGTGKTTLARIIAGAT---DAPF-----EALSAVTSGVKDLREVIE 82 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHH-cCCCceEEEECCCCCCHHHHHHHHHHHh---CCCE-----EEEecccccHHHHHHHHH
Confidence 468999887666 777776 5566788899999999999999999876 2222 222221111111111211
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHH-hcCCcEEEEEccCCCcc--ccccccccCCCCCCCCcEEEE--eeCChHH---Hhc
Q 036236 167 KIGLFDDSWKSKSVEEKAVDIFRS-LREKRFVLLLDDIWERV--DLTKVGVPLPGPQNTTSKVVF--TTRSIDV---CGS 238 (557)
Q Consensus 167 ~l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~~~s~ili--TtR~~~v---~~~ 238 (557)
..... ..+++.+|++|+++... ..+.+...+.. + ..++| ||.++.. ...
T Consensus 83 -------------------~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~-~iilI~att~n~~~~l~~aL 139 (413)
T PRK13342 83 -------------------EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---G-TITLIGATTENPSFEVNPAL 139 (413)
T ss_pred -------------------HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---C-cEEEEEeCCCChhhhccHHH
Confidence 11111 24578899999997542 23333333322 3 44444 3444322 111
Q ss_pred ccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHHHH
Q 036236 239 MESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTIGR 297 (557)
Q Consensus 239 ~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~ 297 (557)
......+.+.+++.++...++.+.+.........-..+....|++.|+|.|..+..+..
T Consensus 140 ~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 140 LSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred hccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 22336789999999999999998754321000011245678899999999977654443
No 25
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.89 E-value=5.3e-08 Score=102.78 Aligned_cols=192 Identities=16% Similarity=0.167 Sum_probs=112.3
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHH--
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKK-- 167 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~-- 167 (557)
..+||.+..++.|.+++..+.-.+.+.++|..|+||||+|+.+.+.+. -...++ +..+........|...
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLn-Ce~~~~-------~~PCG~C~sCr~I~~G~h 87 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALN-CETGVT-------SQPCGVCRACREIDEGRF 87 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CccCCC-------CCCCcccHHHHHHhcCCC
Confidence 468999999999999998444456778999999999999999988762 111110 0111111112222110
Q ss_pred ---hCCCCCCCCCCCHHHHHHHHHHH----hcCCcEEEEEccCCCcc--ccccccccCCCCCCCCcEEEEeeCChHHH--
Q 036236 168 ---IGLFDDSWKSKSVEEKAVDIFRS----LREKRFVLLLDDIWERV--DLTKVGVPLPGPQNTTSKVVFTTRSIDVC-- 236 (557)
Q Consensus 168 ---l~~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~~~s~iliTtR~~~v~-- 236 (557)
+.+.. ......++....+... ..++.-++|||+++... .+..++..+...... .++|+||.+..-.
T Consensus 88 ~DviEIDA--as~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~-v~FILaTtd~~KIp~ 164 (830)
T PRK07003 88 VDYVEMDA--ASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPH-VKFILATTDPQKIPV 164 (830)
T ss_pred ceEEEecc--cccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCC-eEEEEEECChhhccc
Confidence 00000 0111122222222111 12455689999997543 345555544443334 7888877765431
Q ss_pred hcccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCc-hHHHHH
Q 036236 237 GSMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLP-LALLTI 295 (557)
Q Consensus 237 ~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-Lai~~~ 295 (557)
...+-...+.+.+++.++..+.+.+.+.......+ .+....|++.++|.. -++..+
T Consensus 165 TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id---~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 165 TVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFE---PQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred hhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 12233467999999999999999988765543222 356788999999866 455443
No 26
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.89 E-value=5e-10 Score=112.81 Aligned_cols=118 Identities=28% Similarity=0.334 Sum_probs=97.1
Q ss_pred cCCCcccCCc-ccccccceEEEccccccccccCC--CCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCC----
Q 036236 437 AGAGLKEAPA-VKGWENVRRLSLMQNQIETLSEV--PTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCG---- 509 (557)
Q Consensus 437 ~~~~~~~~~~-~~~~~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~---- 509 (557)
+.+++++.|. +...+++-.|++++|+++.+|.. .++..|-.|+|++|. +..+|+. +..+.+|+.|+||+|.
T Consensus 111 ShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ-~RRL~~LqtL~Ls~NPL~hf 188 (1255)
T KOG0444|consen 111 SHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQ-IRRLSMLQTLKLSNNPLNHF 188 (1255)
T ss_pred chhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHH-HHHHhhhhhhhcCCChhhHH
Confidence 3344555543 45567788999999999999876 788999999999998 9999987 7777777777777772
Q ss_pred ---------------------CCccCCccccCCCCCCeeeccCCCCcccChHHHhHhhhhhcCCCCCC
Q 036236 510 ---------------------NIFQLPVGMSKLGSLELLDISHTFIKELPEELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 510 ---------------------~~~~lP~~i~~L~~L~~L~l~~n~l~~lP~~i~~L~~L~~L~~~~~~ 556 (557)
-+..+|.++..|.||+-+|||+|++..+|+.+-++.+|+.|+++++.
T Consensus 189 QLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~ 256 (1255)
T KOG0444|consen 189 QLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNK 256 (1255)
T ss_pred HHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCc
Confidence 12357889999999999999999999999999999999999999875
No 27
>PRK04195 replication factor C large subunit; Provisional
Probab=98.82 E-value=1.7e-07 Score=98.24 Aligned_cols=181 Identities=17% Similarity=0.199 Sum_probs=109.2
Q ss_pred CcccchhHHHHHHHHHHhc---cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHH
Q 036236 90 PTIVGLQSQLEQVWRCLVV---EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGK 166 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~---~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 166 (557)
..++|.++.++++.+|+.. ....+.+.|+|++|+||||+|+.+++.. .++ ++-++.+...... ....++.
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el-----~~~-~ielnasd~r~~~-~i~~~i~ 86 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY-----GWE-VIELNASDQRTAD-VIERVAG 86 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc-----CCC-EEEEcccccccHH-HHHHHHH
Confidence 4689999999999999873 1236889999999999999999999987 122 2223333322222 2222222
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCccc------cccccccCCCCCCCCcEEEEeeCChH-HH--h
Q 036236 167 KIGLFDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWERVD------LTKVGVPLPGPQNTTSKVVFTTRSID-VC--G 237 (557)
Q Consensus 167 ~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~~~l~~~~~~~s~iliTtR~~~-v~--~ 237 (557)
...... .....++-+||||+++.... ...+...+.. .. ..||+|+.+.. .. .
T Consensus 87 ~~~~~~----------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~-~~iIli~n~~~~~~~k~ 147 (482)
T PRK04195 87 EAATSG----------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AK-QPIILTANDPYDPSLRE 147 (482)
T ss_pred HhhccC----------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CC-CCEEEeccCccccchhh
Confidence 211100 00113577999999975321 2333333332 22 44666654322 11 1
Q ss_pred cccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHHHHHh
Q 036236 238 SMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTIGRAM 299 (557)
Q Consensus 238 ~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l 299 (557)
.......+.+.+++.++....+.+.+.......+ .+....|++.++|..-.+......+
T Consensus 148 Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~---~eaL~~Ia~~s~GDlR~ain~Lq~~ 206 (482)
T PRK04195 148 LRNACLMIEFKRLSTRSIVPVLKRICRKEGIECD---DEALKEIAERSGGDLRSAINDLQAI 206 (482)
T ss_pred HhccceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1123456899999999999998887754443332 3578899999999876554433333
No 28
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=5.1e-07 Score=90.11 Aligned_cols=202 Identities=18% Similarity=0.244 Sum_probs=129.2
Q ss_pred CcccchhHHHHHHHHHHhc---cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHH
Q 036236 90 PTIVGLQSQLEQVWRCLVV---EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGK 166 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~---~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 166 (557)
..+.+|+++++++...|.. ++.+.-+.|+|.+|+|||+.++.+.+.........+ +++|.+....+..+++..|+.
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~~ 95 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKILN 95 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHHH
Confidence 4489999999999998873 344445999999999999999999999843222222 889999999999999999999
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHHhc--CCcEEEEEccCCCcccc--ccccccCCCCCCCCcEEE--EeeCChHH-----
Q 036236 167 KIGLFDDSWKSKSVEEKAVDIFRSLR--EKRFVLLLDDIWERVDL--TKVGVPLPGPQNTTSKVV--FTTRSIDV----- 235 (557)
Q Consensus 167 ~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~--~~l~~~l~~~~~~~s~il--iTtR~~~v----- 235 (557)
+++... .......+....+.+.+. ++.+++|||+++....- +-+...+.......++|+ ..+-+..+
T Consensus 96 ~~~~~p--~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld 173 (366)
T COG1474 96 KLGKVP--LTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLD 173 (366)
T ss_pred HcCCCC--CCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhh
Confidence 997222 234555666677777664 47899999999643222 111111111111124433 33443332
Q ss_pred ---HhcccCCCceecCCCCHHHHHHHHHHHhCCC--ccCCCccHHHHHHHHHHHhCC-CchHHHHH
Q 036236 236 ---CGSMESHRKFPVACLSEEDAWELFREKVGQE--TLESHHDIVELAQTVARECDG-LPLALLTI 295 (557)
Q Consensus 236 ---~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~--~~~~~~~~~~~~~~i~~~~~G-~PLai~~~ 295 (557)
...++. ..+..+|-+.+|-.+++..++... .....++.-+++..++..-+| -=.||..+
T Consensus 174 ~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 174 PRVKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 222232 337899999999999999876421 112334444555555555554 33444443
No 29
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.79 E-value=7.3e-09 Score=119.16 Aligned_cols=107 Identities=19% Similarity=0.223 Sum_probs=76.6
Q ss_pred cccccceEEEcccccccc-ccC-CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCccccCCCCCC
Q 036236 448 KGWENVRRLSLMQNQIET-LSE-VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVGMSKLGSLE 525 (557)
Q Consensus 448 ~~~~~l~~l~l~~~~~~~-~~~-~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~i~~L~~L~ 525 (557)
..++++++|++++|.+.. +|. ...+++|++|++++|...+.+|.. ++++++|++|+|++|.....+|..++++++|+
T Consensus 137 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 215 (968)
T PLN00113 137 GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQLVGQIPRELGQMKSLK 215 (968)
T ss_pred cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChh-hhhCcCCCeeeccCCCCcCcCChHHcCcCCcc
Confidence 345677777777777653 333 366778888888877744566665 77788888888887733346777888888888
Q ss_pred eeeccCCCCc-ccChHHHhHhhhhhcCCCCC
Q 036236 526 LLDISHTFIK-ELPEELKKLLEAIQRAPRPD 555 (557)
Q Consensus 526 ~L~l~~n~l~-~lP~~i~~L~~L~~L~~~~~ 555 (557)
+|+|++|++. .+|..++++++|++|+++++
T Consensus 216 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 246 (968)
T PLN00113 216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYN 246 (968)
T ss_pred EEECcCCccCCcCChhHhcCCCCCEEECcCc
Confidence 8888888766 57788888888888877665
No 30
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.79 E-value=4.9e-09 Score=76.12 Aligned_cols=60 Identities=35% Similarity=0.515 Sum_probs=50.5
Q ss_pred CCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCC-ccccCCCCCCeeeccCCCC
Q 036236 473 PHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLP-VGMSKLGSLELLDISHTFI 534 (557)
Q Consensus 473 ~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP-~~i~~L~~L~~L~l~~n~l 534 (557)
++|++|++++|+ +..+|...|..+++|++|++++| .++.+| ..+..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSST-ESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 578888888886 88888877888999999999988 888885 4788899999999988875
No 31
>PRK08727 hypothetical protein; Validated
Probab=98.77 E-value=8.6e-08 Score=90.30 Aligned_cols=169 Identities=14% Similarity=0.121 Sum_probs=97.0
Q ss_pred Ccccch-hHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHh
Q 036236 90 PTIVGL-QSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKI 168 (557)
Q Consensus 90 ~~~vGr-~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 168 (557)
++|++. ...+..+..... +.....+.|+|++|+|||+|++.+++... .....+.+++..+ ....+.
T Consensus 19 ~~f~~~~~n~~~~~~~~~~-~~~~~~l~l~G~~G~GKThL~~a~~~~~~---~~~~~~~y~~~~~------~~~~~~--- 85 (233)
T PRK08727 19 DSYIAAPDGLLAQLQALAA-GQSSDWLYLSGPAGTGKTHLALALCAAAE---QAGRSSAYLPLQA------AAGRLR--- 85 (233)
T ss_pred hhccCCcHHHHHHHHHHHh-ccCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEeHHH------hhhhHH---
Confidence 345544 344444444333 33446799999999999999999988862 2223456665322 111111
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCcc---ccc-cccccCCCCCCCCcEEEEeeCChH---------H
Q 036236 169 GLFDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWERV---DLT-KVGVPLPGPQNTTSKVVFTTRSID---------V 235 (557)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~~-~l~~~l~~~~~~~s~iliTtR~~~---------v 235 (557)
...+.+ .+.-+|||||+.... .+. .+...+......+..||+|++... +
T Consensus 86 -----------------~~~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL 147 (233)
T PRK08727 86 -----------------DALEAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDL 147 (233)
T ss_pred -----------------HHHHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHH
Confidence 011111 133589999996322 222 122222211111256999888532 2
Q ss_pred HhcccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHH
Q 036236 236 CGSMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLAL 292 (557)
Q Consensus 236 ~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai 292 (557)
.+.+.....+++++++.++-.+++.+++.......+ ++....|++.++|..-.+
T Consensus 148 ~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~---~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 148 RSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALD---EAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHHHH
Confidence 333444568899999999999999987654332222 356778888888765544
No 32
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.77 E-value=9.8e-10 Score=105.31 Aligned_cols=107 Identities=21% Similarity=0.286 Sum_probs=80.9
Q ss_pred ccccccceEEEccccccccccCC-CCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCcc-ccCCCCC
Q 036236 447 VKGWENVRRLSLMQNQIETLSEV-PTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVG-MSKLGSL 524 (557)
Q Consensus 447 ~~~~~~l~~l~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~-i~~L~~L 524 (557)
++.++++..|++++|-+..+|.. +.+..|+.|+++.|+ +..+|.. +..+.-|..+-.++| .++.+|.+ ++++.+|
T Consensus 431 l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~Nr-Fr~lP~~-~y~lq~lEtllas~n-qi~~vd~~~l~nm~nL 507 (565)
T KOG0472|consen 431 LSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNR-FRMLPEC-LYELQTLETLLASNN-QIGSVDPSGLKNMRNL 507 (565)
T ss_pred HHhhhcceeeecccchhhhcchhhhhhhhhheecccccc-cccchHH-HhhHHHHHHHHhccc-cccccChHHhhhhhhc
Confidence 34566788888888888777765 667778888888887 7777764 444445555555556 78888665 8888888
Q ss_pred CeeeccCCCCcccChHHHhHhhhhhcCCCCCC
Q 036236 525 ELLDISHTFIKELPEELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 525 ~~L~l~~n~l~~lP~~i~~L~~L~~L~~~~~~ 556 (557)
.+|||.+|.+..+|+.+++|++|++|++.|+.
T Consensus 508 ~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 508 TTLDLQNNDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred ceeccCCCchhhCChhhccccceeEEEecCCc
Confidence 88888888888888888888888888777765
No 33
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.77 E-value=2.1e-07 Score=88.49 Aligned_cols=173 Identities=18% Similarity=0.170 Sum_probs=106.0
Q ss_pred cccchhHHHH---HHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHH
Q 036236 91 TIVGLQSQLE---QVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKK 167 (557)
Q Consensus 91 ~~vGr~~~~~---~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 167 (557)
.+||.+..+. -|.+++. .+....+.+||++|+||||||+.+..... ... ..||..+....-..-.+.|.++
T Consensus 139 dyvGQ~hlv~q~gllrs~ie-q~~ipSmIlWGppG~GKTtlArlia~tsk-~~S----yrfvelSAt~a~t~dvR~ife~ 212 (554)
T KOG2028|consen 139 DYVGQSHLVGQDGLLRSLIE-QNRIPSMILWGPPGTGKTTLARLIASTSK-KHS----YRFVELSATNAKTNDVRDIFEQ 212 (554)
T ss_pred HhcchhhhcCcchHHHHHHH-cCCCCceEEecCCCCchHHHHHHHHhhcC-CCc----eEEEEEeccccchHHHHHHHHH
Confidence 3455554332 2333344 67888899999999999999999998862 211 5677777654433334444432
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCC--ccccccccccCCCCCCCCcEEEE--eeCChHH---Hhccc
Q 036236 168 IGLFDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWE--RVDLTKVGVPLPGPQNTTSKVVF--TTRSIDV---CGSME 240 (557)
Q Consensus 168 l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~s~ili--TtR~~~v---~~~~~ 240 (557)
-. =...+.++|.+|++|.|.. ..+.+. .||...+| ..++| ||.++.. ...+.
T Consensus 213 aq-----------------~~~~l~krkTilFiDEiHRFNksQQD~---fLP~VE~G-~I~lIGATTENPSFqln~aLlS 271 (554)
T KOG2028|consen 213 AQ-----------------NEKSLTKRKTILFIDEIHRFNKSQQDT---FLPHVENG-DITLIGATTENPSFQLNAALLS 271 (554)
T ss_pred HH-----------------HHHhhhcceeEEEeHHhhhhhhhhhhc---ccceeccC-ceEEEecccCCCccchhHHHHh
Confidence 21 1123567899999999942 333333 34555555 65555 8888765 23334
Q ss_pred CCCceecCCCCHHHHHHHHHHHhC---CCc---cCCCc----cHHHHHHHHHHHhCCCch
Q 036236 241 SHRKFPVACLSEEDAWELFREKVG---QET---LESHH----DIVELAQTVARECDGLPL 290 (557)
Q Consensus 241 ~~~~~~l~~L~~~ea~~L~~~~~~---~~~---~~~~~----~~~~~~~~i~~~~~G~PL 290 (557)
...++.|++|+.++...++.+... ... ...+. -...+.+-++..|+|-.-
T Consensus 272 RC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 272 RCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred ccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 567899999999999999887432 211 01111 123456677777888653
No 34
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.75 E-value=3.1e-07 Score=96.08 Aligned_cols=192 Identities=15% Similarity=0.115 Sum_probs=111.1
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhC
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIG 169 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 169 (557)
..+||.+..++.|.+++..+.-...+.++|+.|+||||+|+.+++... -....+ ...++.....+.+...-.
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~Ln-C~~~~~-------~~pCg~C~sC~~I~~g~h 86 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLN-CETGVT-------STPCEVCATCKAVNEGRF 86 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhC-CCcCCC-------CCCCccCHHHHHHhcCCC
Confidence 468999999999999998444457889999999999999999988862 111110 001111111112211000
Q ss_pred CCC---CCCCCCCHHHHHHHHHH----HhcCCcEEEEEccCCCc--cccccccccCCCCCCCCcEEEEeeCChH-HH-hc
Q 036236 170 LFD---DSWKSKSVEEKAVDIFR----SLREKRFVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTRSID-VC-GS 238 (557)
Q Consensus 170 ~~~---~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~iliTtR~~~-v~-~~ 238 (557)
... +.......++....+.. -..++.-++|+|++... .....+...+.....+ .++|++|.+.. +. ..
T Consensus 87 pDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~-v~FILaTtd~~kIp~TI 165 (702)
T PRK14960 87 IDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEH-VKFLFATTDPQKLPITV 165 (702)
T ss_pred CceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCC-cEEEEEECChHhhhHHH
Confidence 000 00011122222221111 12356679999999643 2344454444443334 67777776543 21 11
Q ss_pred ccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHH
Q 036236 239 MESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALL 293 (557)
Q Consensus 239 ~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~ 293 (557)
......+++.+++.++..+.+.+.+........ .+....|++.++|.+-.+.
T Consensus 166 lSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id---~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 166 ISRCLQFTLRPLAVDEITKHLGAILEKEQIAAD---QDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred HHhhheeeccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 234567899999999999999887755442222 3567889999999885443
No 35
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.75 E-value=3.2e-07 Score=90.80 Aligned_cols=178 Identities=13% Similarity=0.174 Sum_probs=114.1
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcc---cCCCCcceEEEEEe-CCccCHHHHHHHHH
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFL---ENPINFDCVIWVVV-SKDLRLEKIQEDIG 165 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~---~~~~~f~~~~wv~~-~~~~~~~~~~~~i~ 165 (557)
..++|.+..++.+...+..+.-.+...++|+.|+||||+|+.+++... ....|+|...|... +......+ .+++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHH
Confidence 357899999999999998444557789999999999999999988651 12346666555442 22223333 22233
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCC--CccccccccccCCCCCCCCcEEEEeeCChHHH--hcccC
Q 036236 166 KKIGLFDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIW--ERVDLTKVGVPLPGPQNTTSKVVFTTRSIDVC--GSMES 241 (557)
Q Consensus 166 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~--~~~~~~~l~~~l~~~~~~~s~iliTtR~~~v~--~~~~~ 241 (557)
+.+...+ ..+++-++|+|+++ +...+..+...+.....+ +.+|++|.+.... ...+.
T Consensus 83 ~~~~~~p------------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~-t~~il~~~~~~~ll~TI~SR 143 (313)
T PRK05564 83 EEVNKKP------------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKG-VFIILLCENLEQILDTIKSR 143 (313)
T ss_pred HHHhcCc------------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCC-eEEEEEeCChHhCcHHHHhh
Confidence 3322110 12345577777764 344466666666654445 8888888765432 11233
Q ss_pred CCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHH
Q 036236 242 HRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLT 294 (557)
Q Consensus 242 ~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~ 294 (557)
...+.+.++++++....+.+...... .+.++.++..++|.|.-+..
T Consensus 144 c~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 144 CQIYKLNRLSKEEIEKFISYKYNDIK-------EEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred ceeeeCCCcCHHHHHHHHHHHhcCCC-------HHHHHHHHHHcCCCHHHHHH
Confidence 46789999999999888876543111 23467889999999876543
No 36
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.74 E-value=3.4e-07 Score=92.31 Aligned_cols=191 Identities=19% Similarity=0.241 Sum_probs=107.6
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhC
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIG 169 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 169 (557)
..++|.+..++.+.+.+..+.-.+.+.++|+.|+||||+|+.+++... ...... ..++.......++.....
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~-c~~~~~-------~~pc~~c~~c~~~~~~~~ 87 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN-CQNGIT-------SNPCRKCIICKEIEKGLC 87 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc-CCCCCC-------CCCCCCCHHHHHHhcCCC
Confidence 568999999999999988433456779999999999999999998862 111000 000000011111111100
Q ss_pred CCC---CCCCCCCHHHHHHHHHHHh-----cCCcEEEEEccCCCcc--ccccccccCCCCCCCCcEEEEeeCChH-HHhc
Q 036236 170 LFD---DSWKSKSVEEKAVDIFRSL-----REKRFVLLLDDIWERV--DLTKVGVPLPGPQNTTSKVVFTTRSID-VCGS 238 (557)
Q Consensus 170 ~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~~~s~iliTtR~~~-v~~~ 238 (557)
... +.......++ ...+.+.+ .+++-++|+|+++... .+..+...+...... .++|++|.+.. +...
T Consensus 88 ~d~~~~~~~~~~~v~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~-~~fIl~t~~~~~l~~t 165 (363)
T PRK14961 88 LDLIEIDAASRTKVEE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQH-IKFILATTDVEKIPKT 165 (363)
T ss_pred CceEEecccccCCHHH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCC-eEEEEEcCChHhhhHH
Confidence 000 0000011121 12222222 2345699999997543 244454444443334 66777665433 2211
Q ss_pred -ccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHH
Q 036236 239 -MESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALL 293 (557)
Q Consensus 239 -~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~ 293 (557)
.+....+++.+++.++..+.+...+.......+ .+.+..|++.++|.|-.+.
T Consensus 166 I~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~---~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 166 ILSRCLQFKLKIISEEKIFNFLKYILIKESIDTD---EYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred HHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 223467899999999999988886644331121 2567789999999886443
No 37
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.74 E-value=1.6e-08 Score=116.35 Aligned_cols=109 Identities=21% Similarity=0.244 Sum_probs=92.2
Q ss_pred cccccccceEEEcccccccc-ccC-CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCc-cCCccccCCC
Q 036236 446 AVKGWENVRRLSLMQNQIET-LSE-VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIF-QLPVGMSKLG 522 (557)
Q Consensus 446 ~~~~~~~l~~l~l~~~~~~~-~~~-~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~-~lP~~i~~L~ 522 (557)
.+..+++++.|++++|.+.. +|. ..++++|++|++++|...+.+|.. ++++++|++|+|++| .+. .+|..+++++
T Consensus 159 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~ 236 (968)
T PLN00113 159 DIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYN-NLSGEIPYEIGGLT 236 (968)
T ss_pred HHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCC-ccCCcCChhHhcCC
Confidence 36678899999999998753 444 378999999999999855667776 899999999999999 554 7899999999
Q ss_pred CCCeeeccCCCCc-ccChHHHhHhhhhhcCCCCCC
Q 036236 523 SLELLDISHTFIK-ELPEELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 523 ~L~~L~l~~n~l~-~lP~~i~~L~~L~~L~~~~~~ 556 (557)
+|++|+|++|.+. .+|.+++++++|++|+++.++
T Consensus 237 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 271 (968)
T PLN00113 237 SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK 271 (968)
T ss_pred CCCEEECcCceeccccChhHhCCCCCCEEECcCCe
Confidence 9999999999876 689999999999999887653
No 38
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.72 E-value=1.8e-07 Score=97.53 Aligned_cols=196 Identities=15% Similarity=0.168 Sum_probs=111.3
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCC-CcceEEEEEeCCccCHHHHHHHHHHH-
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPI-NFDCVIWVVVSKDLRLEKIQEDIGKK- 167 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~~- 167 (557)
..+||.+..++.|.+++..+.-.+.+.++|+.|+||||+|+.+.+.+.-... .-.... +..+........|...
T Consensus 16 ddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~----~~PCG~C~sC~~I~aG~ 91 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT----AQPCGQCRACTEIDAGR 91 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC----CCCCcccHHHHHHHcCC
Confidence 4689999999999999984444567799999999999999999888721000 000000 0011111111221110
Q ss_pred ----hCCCCCCCCCCCHHHHHHHHHHH----hcCCcEEEEEccCCCc--cccccccccCCCCCCCCcEEEEeeCC-hHHH
Q 036236 168 ----IGLFDDSWKSKSVEEKAVDIFRS----LREKRFVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTRS-IDVC 236 (557)
Q Consensus 168 ----l~~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~iliTtR~-~~v~ 236 (557)
+.+... .....++....+... ..++.-++|||+++.. ..+..++..+..-..+ .++|++|.+ ..+.
T Consensus 92 hpDviEIdAa--s~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~-v~FILaTtep~kLl 168 (700)
T PRK12323 92 FVDYIEMDAA--SNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEH-VKFILATTDPQKIP 168 (700)
T ss_pred CCcceEeccc--ccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCC-ceEEEEeCChHhhh
Confidence 000000 111223222222211 2456679999999743 3345555555443334 666655554 3332
Q ss_pred -hcccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHH
Q 036236 237 -GSMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTI 295 (557)
Q Consensus 237 -~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 295 (557)
...+-...+.+.+++.++..+.+.+.+.......+ .+..+.|++.++|.|.-...+
T Consensus 169 pTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d---~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 169 VTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHE---VNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 22233467899999999999998887654432221 245678999999999654433
No 39
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.71 E-value=2.5e-07 Score=93.03 Aligned_cols=194 Identities=11% Similarity=0.086 Sum_probs=107.6
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcc-eEEEEEeCCccCHHHHHHHHH---
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFD-CVIWVVVSKDLRLEKIQEDIG--- 165 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~--- 165 (557)
..++|++..++.+..++. .+..+.+.++|++|+||||+|+.+++... ...+. ..+.++++.... .....+.
T Consensus 15 ~~~~g~~~~~~~L~~~~~-~~~~~~lll~Gp~GtGKT~la~~~~~~l~--~~~~~~~~~~i~~~~~~~--~~~~~~~~~~ 89 (337)
T PRK12402 15 EDILGQDEVVERLSRAVD-SPNLPHLLVQGPPGSGKTAAVRALARELY--GDPWENNFTEFNVADFFD--QGKKYLVEDP 89 (337)
T ss_pred HHhcCCHHHHHHHHHHHh-CCCCceEEEECCCCCCHHHHHHHHHHHhc--CcccccceEEechhhhhh--cchhhhhcCc
Confidence 568999999999999888 45555788999999999999999998862 12222 234444332110 0000000
Q ss_pred ---HHhCCCCCCCCCCCHHHHHHHHHHHh------cCCcEEEEEccCCCcc--ccccccccCCCCCCCCcEEEEeeCChH
Q 036236 166 ---KKIGLFDDSWKSKSVEEKAVDIFRSL------REKRFVLLLDDIWERV--DLTKVGVPLPGPQNTTSKVVFTTRSID 234 (557)
Q Consensus 166 ---~~l~~~~~~~~~~~~~~~~~~l~~~l------~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~~~s~iliTtR~~~ 234 (557)
..++.. .. ......+....+.+.. .+.+-+||+||+.... ....+...+...... +++|+|+.+..
T Consensus 90 ~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~-~~~Il~~~~~~ 166 (337)
T PRK12402 90 RFAHFLGTD-KR-IRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRT-CRFIIATRQPS 166 (337)
T ss_pred chhhhhhhh-hh-hccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCC-CeEEEEeCChh
Confidence 000000 00 0001111122111111 1344589999996432 122233333222233 67777775432
Q ss_pred -HHhc-ccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHH
Q 036236 235 -VCGS-MESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLT 294 (557)
Q Consensus 235 -v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~ 294 (557)
+... ......+.+.+++.++...++.+.+.......+ .+....+++.++|.+-.+..
T Consensus 167 ~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~---~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 167 KLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYD---DDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred hCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 2111 122356888999999999999887654432222 35788899999998765543
No 40
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.69 E-value=2.4e-07 Score=87.35 Aligned_cols=172 Identities=15% Similarity=0.138 Sum_probs=99.5
Q ss_pred cccchhH-HHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhC
Q 036236 91 TIVGLQS-QLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIG 169 (557)
Q Consensus 91 ~~vGr~~-~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 169 (557)
.++|... .+..+.++.. .+....+.|+|++|+|||+|++.+++... .....+.++.+.....
T Consensus 24 f~~~~n~~a~~~l~~~~~-~~~~~~l~l~Gp~G~GKThLl~a~~~~~~---~~~~~v~y~~~~~~~~------------- 86 (235)
T PRK08084 24 FYPGDNDSLLAALQNALR-QEHSGYIYLWSREGAGRSHLLHAACAELS---QRGRAVGYVPLDKRAW------------- 86 (235)
T ss_pred cccCccHHHHHHHHHHHh-CCCCCeEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEEHHHHhh-------------
Confidence 3446333 3444444443 44557899999999999999999998762 1223455665532100
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCc---ccccc-ccccCCCC-CCCCcEEEEeeCChH---------H
Q 036236 170 LFDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWER---VDLTK-VGVPLPGP-QNTTSKVVFTTRSID---------V 235 (557)
Q Consensus 170 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---~~~~~-l~~~l~~~-~~~~s~iliTtR~~~---------v 235 (557)
...+ +.+.+.. --+|++||+... ..|+. +...+... ..++.++|+||+.+. +
T Consensus 87 ---------~~~~----~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L 152 (235)
T PRK08084 87 ---------FVPE----VLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDL 152 (235)
T ss_pred ---------hhHH----HHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHH
Confidence 0011 1111111 238899999542 22322 11112111 123247899988642 3
Q ss_pred HhcccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHHH
Q 036236 236 CGSMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTIG 296 (557)
Q Consensus 236 ~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~ 296 (557)
.+.+.....+++++++.++-.+++.+++.......+ +++..-|++.+.|..-.+..+-
T Consensus 153 ~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~---~~v~~~L~~~~~~d~r~l~~~l 210 (235)
T PRK08084 153 ASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELP---EDVGRFLLKRLDREMRTLFMTL 210 (235)
T ss_pred HHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhhcCCHHHHHHHH
Confidence 444556678999999999999998886644332222 3577888888887665554433
No 41
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.69 E-value=2.3e-07 Score=84.04 Aligned_cols=176 Identities=19% Similarity=0.228 Sum_probs=90.8
Q ss_pred CcccchhHHHHHHHHHHhc----cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHH
Q 036236 90 PTIVGLQSQLEQVWRCLVV----EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIG 165 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~----~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 165 (557)
..|||.+.-++.+.-++.. ++....+.+||++|+||||||.-+++.. ...|. +.+...-....++ ..++
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~~---~~sg~~i~k~~dl-~~il 96 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL---GVNFK---ITSGPAIEKAGDL-AAIL 96 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC---T--EE---EEECCC--SCHHH-HHHH
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc---CCCeE---eccchhhhhHHHH-HHHH
Confidence 5799999888886655542 3457789999999999999999999998 33442 2211110011111 1111
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCc--cc-------ccccccc-CCCCCC----------CCcE
Q 036236 166 KKIGLFDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWER--VD-------LTKVGVP-LPGPQN----------TTSK 225 (557)
Q Consensus 166 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~-------~~~l~~~-l~~~~~----------~~s~ 225 (557)
.. ++ ++-+|++|++... .. .+..... +-+.+. .=+-
T Consensus 97 ~~-----------------------l~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTl 152 (233)
T PF05496_consen 97 TN-----------------------LK-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTL 152 (233)
T ss_dssp HT--------------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EE
T ss_pred Hh-----------------------cC-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceE
Confidence 11 12 3346666777431 10 1111000 001010 1033
Q ss_pred EEEeeCChHHHhcccCC--CceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHHHHHh
Q 036236 226 VVFTTRSIDVCGSMESH--RKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTIGRAM 299 (557)
Q Consensus 226 iliTtR~~~v~~~~~~~--~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l 299 (557)
|=.|||...+...+... -..+++..+.+|-.++..+.+..-.... .++.+.+|+++|.|-|--..-+-...
T Consensus 153 igATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i---~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 153 IGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEI---DEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp EEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE----HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred eeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCc---CHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 44688865543333222 2347999999999999988765544222 24688999999999997655544433
No 42
>PF13173 AAA_14: AAA domain
Probab=98.68 E-value=3.4e-08 Score=83.86 Aligned_cols=119 Identities=18% Similarity=0.167 Sum_probs=79.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 036236 112 VGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSL 191 (557)
Q Consensus 112 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 191 (557)
.+++.|.|+.|+||||++++++.+.. ....+++++........... .+ ....+.+..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~----~~~~~~yi~~~~~~~~~~~~------------------~~-~~~~~~~~~ 58 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL----PPENILYINFDDPRDRRLAD------------------PD-LLEYFLELI 58 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc----ccccceeeccCCHHHHHHhh------------------hh-hHHHHHHhh
Confidence 46899999999999999999998872 34456677665432211000 00 222333333
Q ss_pred cCCcEEEEEccCCCccccccccccCCCCCCCCcEEEEeeCChHHHhcc------cCCCceecCCCCHHH
Q 036236 192 REKRFVLLLDDIWERVDLTKVGVPLPGPQNTTSKVVFTTRSIDVCGSM------ESHRKFPVACLSEED 254 (557)
Q Consensus 192 ~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~s~iliTtR~~~v~~~~------~~~~~~~l~~L~~~e 254 (557)
..++.+++||++....+|......+.+.... .+|++|+.+......- +....++|.||+..|
T Consensus 59 ~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~-~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 59 KPGKKYIFIDEIQYLPDWEDALKFLVDNGPN-IKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred ccCCcEEEEehhhhhccHHHHHHHHHHhccC-ceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 3477899999998887887776666655434 7999999986654321 223467999999876
No 43
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.68 E-value=2.7e-07 Score=99.52 Aligned_cols=194 Identities=16% Similarity=0.136 Sum_probs=108.7
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhC
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIG 169 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 169 (557)
..+||.+..++.|.+++..+.-...+.++|+.|+||||+|+.+++.+.. ....... .+........+.....
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnc-e~~~~~~-------pCg~C~sC~~i~~g~~ 87 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC-EQGVTAT-------PCGVCSSCVEIAQGRF 87 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccC-ccCCCCC-------CCCCchHHHHHhcCCC
Confidence 4689999999999999883333455689999999999999999988721 1111000 0000000111111000
Q ss_pred -----CCCC-CCCCCCHHHHHHHHHH-HhcCCcEEEEEccCCCc--cccccccccCCCCCCCCcEEEEeeCC-hHHH-hc
Q 036236 170 -----LFDD-SWKSKSVEEKAVDIFR-SLREKRFVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTRS-IDVC-GS 238 (557)
Q Consensus 170 -----~~~~-~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~iliTtR~-~~v~-~~ 238 (557)
+... ........++...+.. ...+++-++|||++... .....++..+...... .++|++|.+ ..+. ..
T Consensus 88 ~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~-vrFILaTTe~~kLl~TI 166 (944)
T PRK14949 88 VDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEH-VKFLLATTDPQKLPVTV 166 (944)
T ss_pred ceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCC-eEEEEECCCchhchHHH
Confidence 0000 0000111111111111 12456779999999643 3345554444433333 666665544 3332 11
Q ss_pred ccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHH
Q 036236 239 MESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTI 295 (557)
Q Consensus 239 ~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 295 (557)
......|++.+|+.++....+.+.+....... ..+.+..|++.++|.|--+..+
T Consensus 167 lSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~---edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 167 LSRCLQFNLKSLTQDEIGTQLNHILTQEQLPF---EAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred HHhheEEeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 22346799999999999999988765433221 2356788999999988644433
No 44
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.67 E-value=5.9e-08 Score=88.36 Aligned_cols=46 Identities=28% Similarity=0.385 Sum_probs=33.2
Q ss_pred cccchhHHHHHHHHHHh--ccCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 91 TIVGLQSQLEQVWRCLV--VEESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 91 ~~vGr~~~~~~l~~~L~--~~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
.||||+++++++...+. .....+.+.|+|++|+|||+|+++++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999993 24567999999999999999999999987
No 45
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.65 E-value=3.7e-08 Score=95.95 Aligned_cols=293 Identities=19% Similarity=0.209 Sum_probs=185.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRS 190 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 190 (557)
..+.+.++|.|||||||++-++.. .. ..+-+.+.++.+..-.+...+.-.+...++... .+-+.....+...
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~--~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~-----~~g~~~~~~~~~~ 84 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AA--SEYADGVAFVDLAPITDPALVFPTLAGALGLHV-----QPGDSAVDTLVRR 84 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hh--hhcccceeeeeccccCchhHhHHHHHhhccccc-----ccchHHHHHHHHH
Confidence 678999999999999999999988 41 234457778888877788888877777787653 2223344566677
Q ss_pred hcCCcEEEEEccCCCccc-cccccccCCCCCCCCcEEEEeeCChHHHhcccCCCceecCCCCHH-HHHHHHHHHhCCCc-
Q 036236 191 LREKRFVLLLDDIWERVD-LTKVGVPLPGPQNTTSKVVFTTRSIDVCGSMESHRKFPVACLSEE-DAWELFREKVGQET- 267 (557)
Q Consensus 191 l~~k~~LlVlDdv~~~~~-~~~l~~~l~~~~~~~s~iliTtR~~~v~~~~~~~~~~~l~~L~~~-ea~~L~~~~~~~~~- 267 (557)
..+++.++|+||..+..+ -..+...+..+... -.|+.|+|.... ........+++|+.. ++.++|...+....
T Consensus 85 ~~~rr~llvldncehl~~~~a~~i~all~~~~~-~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~ 160 (414)
T COG3903 85 IGDRRALLVLDNCEHLLDACAALIVALLGACPR-LAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVAL 160 (414)
T ss_pred HhhhhHHHHhcCcHHHHHHHHHHHHHHHccchh-hhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhcc
Confidence 788999999999743211 11111122222223 568888886432 344566778888765 78888887654322
Q ss_pred -cCCCccHHHHHHHHHHHhCCCchHHHHHHHHhccCCCHHHHHH----HHHHHHhcccccCCchhhHhhhHhhhhccCCC
Q 036236 268 -LESHHDIVELAQTVARECDGLPLALLTIGRAMACKRTAEEWRH----AVEVLRRSASEFAGLGEKVYSLLKFSYDSLQN 342 (557)
Q Consensus 268 -~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~~~~~~w~~----~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~ 342 (557)
.............|.++.+|.|++|...++..+.- ...+... -...+..........+......+.+||.-|..
T Consensus 161 ~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl-~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtg 239 (414)
T COG3903 161 SFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSL-SPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTG 239 (414)
T ss_pred ceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhc-CHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhh
Confidence 12223334678899999999999999999877663 2222222 11222222111111234667889999999988
Q ss_pred cchhHHHhhhccCCCCcccCHHHHHHHHHhcCCcccccchhHHHHHHHHHHHHHHhcccccc---CCCcEEeCHHHHHHH
Q 036236 343 ETIKSCFLYCCLYPEDYGILKWDLIDCWIGEGFLEQSDRLSAEYQGYYIVGTLVQACLLEEL---EDDKVKMHDVIRDMA 419 (557)
Q Consensus 343 ~~~k~~~l~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~l~~L~~~sll~~~---~~~~~~mHdlv~~~a 419 (557)
..+..|..++.|...|.-. ...|.+.|-... ...+.....+..+++++++... ....|+.-+-++.|+
T Consensus 240 -we~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~----~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Ya 310 (414)
T COG3903 240 -WERALFGRLAVFVGGFDLG----LALAVAAGADVD----VPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYA 310 (414)
T ss_pred -HHHHHhcchhhhhhhhccc----HHHHHhcCCccc----cchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHH
Confidence 6888999999998877655 234444443221 1234444457778888887543 233455555566666
Q ss_pred HHHhhh
Q 036236 420 LWITSE 425 (557)
Q Consensus 420 ~~~~~~ 425 (557)
.....+
T Consensus 311 laeL~r 316 (414)
T COG3903 311 LAELHR 316 (414)
T ss_pred HHHHHh
Confidence 655544
No 46
>PTZ00202 tuzin; Provisional
Probab=98.65 E-value=2.3e-06 Score=84.63 Aligned_cols=163 Identities=17% Similarity=0.144 Sum_probs=99.8
Q ss_pred CCCCCcccchhHHHHHHHHHHhc-c-CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHH
Q 036236 86 RPTEPTIVGLQSQLEQVWRCLVV-E-ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQED 163 (557)
Q Consensus 86 ~~~~~~~vGr~~~~~~l~~~L~~-~-~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 163 (557)
|+..+.|+||++++.+|...|.. + +..+++.|+|++|+|||||++.+.... . + ..++++.. +..+++..
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l---~--~-~qL~vNpr---g~eElLr~ 328 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE---G--M-PAVFVDVR---GTEDTLRS 328 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC---C--c-eEEEECCC---CHHHHHHH
Confidence 44457899999999999999973 2 345699999999999999999999775 1 1 13333333 67999999
Q ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHHh-----c-CCcEEEEEccCCCcccccccc---ccCCCCCCCCcEEEEeeCChH
Q 036236 164 IGKKIGLFDDSWKSKSVEEKAVDIFRSL-----R-EKRFVLLLDDIWERVDLTKVG---VPLPGPQNTTSKVVFTTRSID 234 (557)
Q Consensus 164 i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~-~k~~LlVlDdv~~~~~~~~l~---~~l~~~~~~~s~iliTtR~~~ 234 (557)
++.+||.+.. ..-.++...|.+.+ . +++.+||+-=- +-.++..+. ..|.....- |+|++----+.
T Consensus 329 LL~ALGV~p~----~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lr-eg~~l~rvyne~v~la~drr~-ch~v~evples 402 (550)
T PTZ00202 329 VVKALGVPNV----EACGDLLDFISEACRRAKKMNGETPLLVLKLR-EGSSLQRVYNEVVALACDRRL-CHVVIEVPLES 402 (550)
T ss_pred HHHHcCCCCc----ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEec-CCCcHHHHHHHHHHHHccchh-heeeeeehHhh
Confidence 9999997432 12233333333332 2 56667766321 111111110 011111122 66766443333
Q ss_pred HHh---cccCCCceecCCCCHHHHHHHHHHHh
Q 036236 235 VCG---SMESHRKFPVACLSEEDAWELFREKV 263 (557)
Q Consensus 235 v~~---~~~~~~~~~l~~L~~~ea~~L~~~~~ 263 (557)
+.. .+.--..|.+++++.++|.++..+..
T Consensus 403 lt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 403 LTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred cchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 211 12233468899999999999887654
No 47
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.65 E-value=6.9e-07 Score=93.08 Aligned_cols=192 Identities=21% Similarity=0.118 Sum_probs=109.5
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhC
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIG 169 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 169 (557)
..++|.+..++.|..++..+.-...+.++|++|+||||+|+.+++... ....+...+|.|.+... +......-...+.
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~-c~~~~~~~cg~C~sc~~-i~~~~h~dv~el~ 91 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVN-CSGEDPKPCGECESCLA-VRRGAHPDVLEID 91 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHh-ccCCCCCCCCcChhhHH-HhcCCCCceEEec
Confidence 468999999999999988444456679999999999999999988872 11122223333221100 0000000000000
Q ss_pred CCCCCCCCCCHHHHHHHHHHH-----hcCCcEEEEEccCCCc--cccccccccCCCCCCCCcEEEEeeCCh-HHHh-ccc
Q 036236 170 LFDDSWKSKSVEEKAVDIFRS-----LREKRFVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTRSI-DVCG-SME 240 (557)
Q Consensus 170 ~~~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~iliTtR~~-~v~~-~~~ 240 (557)
.. .....+. +..+.+. ..+++-++|+|+++.. ..+..+...+...... +.+|++|... .+.. ...
T Consensus 92 ~~----~~~~vd~-iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~-t~~Il~t~~~~kl~~~I~S 165 (504)
T PRK14963 92 AA----SNNSVED-VRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEH-VIFILATTEPEKMPPTILS 165 (504)
T ss_pred cc----ccCCHHH-HHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCC-EEEEEEcCChhhCChHHhc
Confidence 00 0111221 1122222 2345669999999743 2344555555443333 5555555433 3211 122
Q ss_pred CCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHH
Q 036236 241 SHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLAL 292 (557)
Q Consensus 241 ~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai 292 (557)
....+++.+++.++....+.+.+...+...+ .+.+..|++.++|.+--+
T Consensus 166 Rc~~~~f~~ls~~el~~~L~~i~~~egi~i~---~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 166 RTQHFRFRRLTEEEIAGKLRRLLEAEGREAE---PEALQLVARLADGAMRDA 214 (504)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 3457999999999999999987754442222 357789999999998654
No 48
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.64 E-value=2.1e-07 Score=81.02 Aligned_cols=123 Identities=24% Similarity=0.176 Sum_probs=71.4
Q ss_pred cchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCC
Q 036236 93 VGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFD 172 (557)
Q Consensus 93 vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 172 (557)
+|++..++.+...+. .+..+.+.|+|++|+|||++++.+++... ..-..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~-~~~~~~v~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~----- 71 (151)
T cd00009 1 VGQEEAIEALREALE-LPPPKNLLLYGPPGTGKTTLARAIANELF---RPGAPFLYLNASDLLEGLVVAELFGHF----- 71 (151)
T ss_pred CchHHHHHHHHHHHh-CCCCCeEEEECCCCCCHHHHHHHHHHHhh---cCCCCeEEEehhhhhhhhHHHHHhhhh-----
Confidence 478889999999887 55577899999999999999999999872 222345666554433222111111000
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCc-----cccccccccCCCC--CCCCcEEEEeeCCh
Q 036236 173 DSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWER-----VDLTKVGVPLPGP--QNTTSKVVFTTRSI 233 (557)
Q Consensus 173 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----~~~~~l~~~l~~~--~~~~s~iliTtR~~ 233 (557)
............++.++|+||++.. ..+..+...+... ...+..||+||...
T Consensus 72 ---------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 72 ---------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred ---------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 0011112223456789999999743 1122221222111 01237888888764
No 49
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.64 E-value=1.4e-06 Score=87.19 Aligned_cols=197 Identities=14% Similarity=0.037 Sum_probs=110.2
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCC-Ccce-EEEEEeCCccCHHHHHHHHHHH
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPI-NFDC-VIWVVVSKDLRLEKIQEDIGKK 167 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~-~f~~-~~wv~~~~~~~~~~~~~~i~~~ 167 (557)
..++|.+..++.|.+.+..+.-...+.++|+.|+||+|+|..+++..--... ..+. ..-...-.........+.+...
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~ 98 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAAG 98 (365)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHcc
Confidence 5789999999999999984444567899999999999999998887621110 0000 0000000000001111222111
Q ss_pred hCCC-------C-CCC----CCCCHHHHHHHHHHHh-----cCCcEEEEEccCCCc--cccccccccCCCCCCCCcEEEE
Q 036236 168 IGLF-------D-DSW----KSKSVEEKAVDIFRSL-----REKRFVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVF 228 (557)
Q Consensus 168 l~~~-------~-~~~----~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~ili 228 (557)
-..+ . +.. ....+++ +..+.+.+ .+++-++|+|+++.. .....+...+.....+ +.+|+
T Consensus 99 ~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~-~~~IL 176 (365)
T PRK07471 99 AHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPAR-SLFLL 176 (365)
T ss_pred CCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCC-eEEEE
Confidence 0000 0 000 1112233 33344443 246679999999643 3334444444433333 66777
Q ss_pred eeCChHH-H-hcccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHH
Q 036236 229 TTRSIDV-C-GSMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTI 295 (557)
Q Consensus 229 TtR~~~v-~-~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 295 (557)
+|.+... . ...+....+.+.+++.++..+++.+...... ......++..++|.|+....+
T Consensus 177 ~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~-------~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 177 VSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP-------DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred EECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC-------HHHHHHHHHHcCCCHHHHHHH
Confidence 7766542 2 2223456789999999999999987643211 122367899999999866444
No 50
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.64 E-value=7.9e-07 Score=88.63 Aligned_cols=179 Identities=13% Similarity=0.127 Sum_probs=104.4
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEe--CCccCHHHHHHHHHHH
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVV--SKDLRLEKIQEDIGKK 167 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~~~ 167 (557)
..++|+++.++.+..++. .+..+.+.|+|++|+||||+|+.+++.... ..+. ..++.+ +.......+...+...
T Consensus 17 ~~~~g~~~~~~~l~~~i~-~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~--~~~~-~~~i~~~~~~~~~~~~~~~~i~~~ 92 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVK-EKNMPHLLFAGPPGTGKTTAALALARELYG--EDWR-ENFLELNASDERGIDVIRNKIKEF 92 (319)
T ss_pred HHhcCcHHHHHHHHHHHh-CCCCCeEEEECCCCCCHHHHHHHHHHHHcC--Cccc-cceEEeccccccchHHHHHHHHHH
Confidence 458999999999999998 555556899999999999999999988621 1221 112222 2211111111111111
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCcc--ccccccccCCCCCCCCcEEEEeeCChH-HHh-cccCCC
Q 036236 168 IGLFDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWERV--DLTKVGVPLPGPQNTTSKVVFTTRSID-VCG-SMESHR 243 (557)
Q Consensus 168 l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~~~s~iliTtR~~~-v~~-~~~~~~ 243 (557)
..... .....+-++++|+++... ....+...+...... +.+|+++.... +.. ......
T Consensus 93 ~~~~~-----------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~-~~lIl~~~~~~~l~~~l~sr~~ 154 (319)
T PRK00440 93 ARTAP-----------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQN-TRFILSCNYSSKIIDPIQSRCA 154 (319)
T ss_pred HhcCC-----------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCC-CeEEEEeCCccccchhHHHHhh
Confidence 10000 001235689999986432 222333333332333 66777664321 111 111234
Q ss_pred ceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHH
Q 036236 244 KFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALL 293 (557)
Q Consensus 244 ~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~ 293 (557)
.+++.+++.++....+...+.......+ .+....+++.++|.+--+.
T Consensus 155 ~~~~~~l~~~ei~~~l~~~~~~~~~~i~---~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 155 VFRFSPLKKEAVAERLRYIAENEGIEIT---DDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred eeeeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 6899999999999998887754442222 3567889999999876543
No 51
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.64 E-value=6.8e-08 Score=82.47 Aligned_cols=117 Identities=23% Similarity=0.265 Sum_probs=77.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccC--CCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLEN--PINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIF 188 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~--~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 188 (557)
+.+++.|+|++|+|||++++++.+..... ...-..++|+.+....+...+...|+.+++..... ..+..+....+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~l~~~~~ 80 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS--RQTSDELRSLLI 80 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--TS-HHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--cCCHHHHHHHHH
Confidence 45789999999999999999998886210 00134677999988889999999999999876542 356677778888
Q ss_pred HHhcCCcE-EEEEccCCCc-c--ccccccccCCCCCCCCcEEEEeeCC
Q 036236 189 RSLREKRF-VLLLDDIWER-V--DLTKVGVPLPGPQNTTSKVVFTTRS 232 (557)
Q Consensus 189 ~~l~~k~~-LlVlDdv~~~-~--~~~~l~~~l~~~~~~~s~iliTtR~ 232 (557)
+.+...+. +||+|+++.. . .++.+..... ..+ .+||+..+.
T Consensus 81 ~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~-~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESN-IKVVLVGTP 125 (131)
T ss_dssp HHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCB-EEEEEEESS
T ss_pred HHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCC-CeEEEEECh
Confidence 88876655 9999999653 1 1223322222 333 667766654
No 52
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.64 E-value=2.2e-08 Score=100.58 Aligned_cols=116 Identities=24% Similarity=0.283 Sum_probs=91.8
Q ss_pred CCcccCCccccccc-ceEEEccccccccccCC--CCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccC-
Q 036236 439 AGLKEAPAVKGWEN-VRRLSLMQNQIETLSEV--PTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQL- 514 (557)
Q Consensus 439 ~~~~~~~~~~~~~~-l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~l- 514 (557)
+.+..+|.++.... +..|++.+|.+..+... ..++.|++|||+.|. +..+|...|..-.++++|+|++| .|+.+
T Consensus 112 N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~-is~i~~~sfp~~~ni~~L~La~N-~It~l~ 189 (873)
T KOG4194|consen 112 NELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNL-ISEIPKPSFPAKVNIKKLNLASN-RITTLE 189 (873)
T ss_pred chhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhch-hhcccCCCCCCCCCceEEeeccc-cccccc
Confidence 34556666665544 88899998888776443 678889999999987 88888776777678999999999 88887
Q ss_pred CccccCCCCCCeeeccCCCCcccChH-HHhHhhhhhcCCCCCC
Q 036236 515 PVGMSKLGSLELLDISHTFIKELPEE-LKKLLEAIQRAPRPDR 556 (557)
Q Consensus 515 P~~i~~L~~L~~L~l~~n~l~~lP~~-i~~L~~L~~L~~~~~~ 556 (557)
-..|..|.+|.+|.|+.|+|+.||.- |.+|++|+.|+++.++
T Consensus 190 ~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ 232 (873)
T KOG4194|consen 190 TGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR 232 (873)
T ss_pred cccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc
Confidence 34788888999999999999999865 5669999999988765
No 53
>PF14516 AAA_35: AAA-like domain
Probab=98.63 E-value=1.1e-05 Score=80.29 Aligned_cols=202 Identities=14% Similarity=0.144 Sum_probs=120.1
Q ss_pred CCcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCc-----cCHH----H
Q 036236 89 EPTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKD-----LRLE----K 159 (557)
Q Consensus 89 ~~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-----~~~~----~ 159 (557)
.+.+|.|...-+++.+.+. .....+.|.|+-.+|||+|...+.+... . .. -.++++++..- .+.. .
T Consensus 10 ~~~Yi~R~~~e~~~~~~i~--~~G~~~~I~apRq~GKTSll~~l~~~l~-~-~~-~~~v~id~~~~~~~~~~~~~~f~~~ 84 (331)
T PF14516_consen 10 SPFYIERPPAEQECYQEIV--QPGSYIRIKAPRQMGKTSLLLRLLERLQ-Q-QG-YRCVYIDLQQLGSAIFSDLEQFLRW 84 (331)
T ss_pred CCcccCchHHHHHHHHHHh--cCCCEEEEECcccCCHHHHHHHHHHHHH-H-CC-CEEEEEEeecCCCcccCCHHHHHHH
Confidence 4567899977777777776 3467999999999999999999998872 2 23 34567776542 2344 4
Q ss_pred HHHHHHHHhCCCCCC---C--CCCCHHHHHHHHHHHh---cCCcEEEEEccCCCcccc----ccccccCCC-------CC
Q 036236 160 IQEDIGKKIGLFDDS---W--KSKSVEEKAVDIFRSL---REKRFVLLLDDIWERVDL----TKVGVPLPG-------PQ 220 (557)
Q Consensus 160 ~~~~i~~~l~~~~~~---~--~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~----~~l~~~l~~-------~~ 220 (557)
+...+.+++++...- + ...+.......+.+.+ .+++.+|+||+|+...+. ..+...+.. ..
T Consensus 85 ~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~ 164 (331)
T PF14516_consen 85 FCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNP 164 (331)
T ss_pred HHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCc
Confidence 445555666554310 0 0112222233333332 258999999999743221 111111100 00
Q ss_pred -CCCcEEEEeeCCh-HH-H----hcccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHH
Q 036236 221 -NTTSKVVFTTRSI-DV-C----GSMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALL 293 (557)
Q Consensus 221 -~~~s~iliTtR~~-~v-~----~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~ 293 (557)
...-++++....+ .. . +.+.....+.|++++.+|...|+.++-..-. ....++|...+||+|..+.
T Consensus 165 ~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~-------~~~~~~l~~~tgGhP~Lv~ 237 (331)
T PF14516_consen 165 IWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFS-------QEQLEQLMDWTGGHPYLVQ 237 (331)
T ss_pred ccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCC-------HHHHHHHHHHHCCCHHHHH
Confidence 1101222222111 11 1 1122345789999999999999887632211 1238899999999999999
Q ss_pred HHHHHhccC
Q 036236 294 TIGRAMACK 302 (557)
Q Consensus 294 ~~~~~l~~~ 302 (557)
.++..+...
T Consensus 238 ~~~~~l~~~ 246 (331)
T PF14516_consen 238 KACYLLVEE 246 (331)
T ss_pred HHHHHHHHc
Confidence 999988663
No 54
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.63 E-value=1.7e-08 Score=111.36 Aligned_cols=113 Identities=22% Similarity=0.258 Sum_probs=94.5
Q ss_pred CcccCCcccccccceEEEccccc--cccccC--CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCC
Q 036236 440 GLKEAPAVKGWENVRRLSLMQNQ--IETLSE--VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLP 515 (557)
Q Consensus 440 ~~~~~~~~~~~~~l~~l~l~~~~--~~~~~~--~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP 515 (557)
.+..++.-...++++.|-+..|. +..++. +..++.|++|+|++|..+.++|.. ++++-+||||+|+++ .++.||
T Consensus 534 ~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t-~I~~LP 611 (889)
T KOG4658|consen 534 KIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDT-GISHLP 611 (889)
T ss_pred chhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccCC-Cccccc
Confidence 33344444555689999999886 565655 578999999999999989999998 999999999999999 999999
Q ss_pred ccccCCCCCCeeeccCCC-CcccChHHHhHhhhhhcCCCC
Q 036236 516 VGMSKLGSLELLDISHTF-IKELPEELKKLLEAIQRAPRP 554 (557)
Q Consensus 516 ~~i~~L~~L~~L~l~~n~-l~~lP~~i~~L~~L~~L~~~~ 554 (557)
.++++|+.|.|||+..+. +..+|..+..|++|++|.+..
T Consensus 612 ~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 612 SGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred hHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 999999999999999985 556666677799999887653
No 55
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.62 E-value=2.8e-07 Score=93.75 Aligned_cols=191 Identities=14% Similarity=0.065 Sum_probs=108.7
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhC
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIG 169 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 169 (557)
..++|.+..+..|..++..+.-...+.++|+.|+||||+|+.+++... ...... ...+..... ...+.....
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Ln--ce~~~~--~~pCg~C~s----C~~i~~g~~ 89 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLN--CENPIG--NEPCNECTS----CLEITKGIS 89 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcC--cccccC--ccccCCCcH----HHHHHccCC
Confidence 468999999999999998333345689999999999999999998872 111100 001111111 112211111
Q ss_pred CCCCCC---CCCCHH---HHHHHHHHH-hcCCcEEEEEccCCCc--cccccccccCCCCCCCCcEEEEeeCC-hHHH-hc
Q 036236 170 LFDDSW---KSKSVE---EKAVDIFRS-LREKRFVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTRS-IDVC-GS 238 (557)
Q Consensus 170 ~~~~~~---~~~~~~---~~~~~l~~~-l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~iliTtR~-~~v~-~~ 238 (557)
...-.. .....+ ++...+... ..++.-++|+|+++.. ..+..++..+...... ..+|++|.. ..+. ..
T Consensus 90 ~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~-viFILaTte~~kI~~TI 168 (484)
T PRK14956 90 SDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAH-IVFILATTEFHKIPETI 168 (484)
T ss_pred ccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCc-eEEEeecCChhhccHHH
Confidence 000000 011122 222222211 2456679999999643 3355555555432233 555555543 3332 22
Q ss_pred ccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHH
Q 036236 239 MESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLAL 292 (557)
Q Consensus 239 ~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai 292 (557)
......|.+.+++.++..+.+.+.+...+...+ .+....|++.++|.+--+
T Consensus 169 ~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e---~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 169 LSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYD---QEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred HhhhheeeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCChHHHH
Confidence 233457999999999999998887654432222 357789999999998543
No 56
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.62 E-value=5.9e-07 Score=89.33 Aligned_cols=197 Identities=12% Similarity=0.091 Sum_probs=112.1
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCC-CcceEEEEEeCCccCHHHHHHHHHHH-
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPI-NFDCVIWVVVSKDLRLEKIQEDIGKK- 167 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~~- 167 (557)
..++|.++..+.+...+..+.-...+.|+|+.|+||||+|..+++....... .+... .....+......+.+...
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~~~~ 99 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIAQGA 99 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHHcCC
Confidence 5689999999999999984444567999999999999999999888721100 01111 011111112233333322
Q ss_pred ------hCCCC-CC----CCCCCHHHHHHHHHHHh-----cCCcEEEEEccCCCc--cccccccccCCCCCCCCcEEEEe
Q 036236 168 ------IGLFD-DS----WKSKSVEEKAVDIFRSL-----REKRFVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFT 229 (557)
Q Consensus 168 ------l~~~~-~~----~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~iliT 229 (557)
+..+. +. ......++. ..+.+.+ .+++-++|+|+++.. .....++..+...... ..+|++
T Consensus 100 hPdl~~l~~~~~~~~~~~~~~I~vd~i-R~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~-~~fiLi 177 (351)
T PRK09112 100 HPNLLHITRPFDEKTGKFKTAITVDEI-RRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPAR-ALFILI 177 (351)
T ss_pred CCCEEEeecccccccccccccCCHHHH-HHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCC-ceEEEE
Confidence 10000 00 011223332 3444443 346679999999643 2233444444332233 555554
Q ss_pred eCChH-HH-hcccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHHH
Q 036236 230 TRSID-VC-GSMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTIG 296 (557)
Q Consensus 230 tR~~~-v~-~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~ 296 (557)
|.++. +. ...+....+++.+++.++..+++.+...... -..+....+++.++|.|.....+.
T Consensus 178 t~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~-----~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 178 SHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG-----SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred ECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC-----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 54432 21 1122345899999999999999987432111 113456789999999998665443
No 57
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.62 E-value=1.2e-06 Score=91.03 Aligned_cols=194 Identities=17% Similarity=0.164 Sum_probs=109.6
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcc-eEEEEEeCCccCHHHHHHHHHHHh
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFD-CVIWVVVSKDLRLEKIQEDIGKKI 168 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l 168 (557)
..++|.+..+..|...+..+.-.+.+.++|+.|+||||+|+.+++...- ..... ..-+..+.. ......+....
T Consensus 21 ~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc-~~~~~~~~~~~~C~~----C~~C~~i~~~~ 95 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNC-SALITENTTIKTCEQ----CTNCISFNNHN 95 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcC-ccccccCcCcCCCCC----ChHHHHHhcCC
Confidence 4679999999999988873444568899999999999999999988621 11100 000000110 01111111100
Q ss_pred CCCC---CCCCCCCHHHHHHHHHHH----hcCCcEEEEEccCCCc--cccccccccCCCCCCCCcEEEE-eeCChHHHhc
Q 036236 169 GLFD---DSWKSKSVEEKAVDIFRS----LREKRFVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVF-TTRSIDVCGS 238 (557)
Q Consensus 169 ~~~~---~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~ili-TtR~~~v~~~ 238 (557)
.... +.......++....+... +.+++-++|+|+++.. ..+..+...+...... +.+|+ ||+...+...
T Consensus 96 h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~-~vfI~aTte~~kI~~t 174 (507)
T PRK06645 96 HPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPH-IIFIFATTEVQKIPAT 174 (507)
T ss_pred CCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCC-EEEEEEeCChHHhhHH
Confidence 0000 000111222222221111 2456778999999753 3355555555443333 56554 5444444322
Q ss_pred c-cCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHH
Q 036236 239 M-ESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLAL 292 (557)
Q Consensus 239 ~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai 292 (557)
+ .....+++.+++.++....+...+.......+ .+....|++.++|.+--+
T Consensus 175 I~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie---~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 175 IISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD---IEALRIIAYKSEGSARDA 226 (507)
T ss_pred HHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 2 23457899999999999999988765442222 346778999999987544
No 58
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.60 E-value=1.5e-06 Score=87.62 Aligned_cols=187 Identities=12% Similarity=0.048 Sum_probs=104.6
Q ss_pred CcccchhHHHHHHHHHHhccC---------CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHH
Q 036236 90 PTIVGLQSQLEQVWRCLVVEE---------SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKI 160 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~---------~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 160 (557)
+.++|.+..++.|.+++..+. -.+.+.++|++|+|||++|+.++....- ... . + ..++....
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c-~~~-~---~----~~Cg~C~~ 75 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQC-TDP-D---E----PGCGECRA 75 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCC-CCC-C---C----CCCCCCHH
Confidence 468999999999999998322 3567889999999999999999876511 100 0 0 00111111
Q ss_pred HHHHHHHhCCC----CCCCCCCCHHHHHHHHHHHh-----cCCcEEEEEccCCCcc--ccccccccCCCCCCCCcEEEEe
Q 036236 161 QEDIGKKIGLF----DDSWKSKSVEEKAVDIFRSL-----REKRFVLLLDDIWERV--DLTKVGVPLPGPQNTTSKVVFT 229 (557)
Q Consensus 161 ~~~i~~~l~~~----~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~~~s~iliT 229 (557)
.+.+...-... .+.......++. ..+.+.+ .+++-++|+|+++... ....+...+.....+ ..+|++
T Consensus 76 C~~~~~~~hpD~~~i~~~~~~i~i~~i-R~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~-~~fIL~ 153 (394)
T PRK07940 76 CRTVLAGTHPDVRVVAPEGLSIGVDEV-RELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPR-TVWLLC 153 (394)
T ss_pred HHHHhcCCCCCEEEeccccccCCHHHH-HHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCC-CeEEEE
Confidence 11111100000 000011122222 2222222 2455588889996432 233344444333334 666666
Q ss_pred eCChH-HH-hcccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHH
Q 036236 230 TRSID-VC-GSMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTI 295 (557)
Q Consensus 230 tR~~~-v~-~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 295 (557)
|.+.. +. ...+....+.+.+++.++..+.+.+..+.. .+.+..++..++|.|.....+
T Consensus 154 a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~~--------~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 154 APSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGVD--------PETARRAARASQGHIGRARRL 213 (394)
T ss_pred ECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCCC--------HHHHHHHHHHcCCCHHHHHHH
Confidence 66543 32 112334689999999999998887543211 245778999999999755433
No 59
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.60 E-value=1.7e-06 Score=87.63 Aligned_cols=183 Identities=14% Similarity=0.174 Sum_probs=108.1
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCC-------------------CCcceEEEEE
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENP-------------------INFDCVIWVV 150 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~~f~~~~wv~ 150 (557)
..++|.+..++.+.+++....-.+.+.++|++|+|||++|+.+........ .+++. +++.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~~~ 92 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IEID 92 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEee
Confidence 467999999999999998333456788999999999999999988762110 01221 2221
Q ss_pred eCCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCc--cccccccccCCCCCCCCcEEEE
Q 036236 151 VSKDLRLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVF 228 (557)
Q Consensus 151 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~ili 228 (557)
........ ..+++...+... -..+++-++|+|+++.. .....+...+...... +.+|+
T Consensus 93 ~~~~~~~~-~~~~l~~~~~~~------------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~-~~lIl 152 (355)
T TIGR02397 93 AASNNGVD-DIREILDNVKYA------------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEH-VVFIL 152 (355)
T ss_pred ccccCCHH-HHHHHHHHHhcC------------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccc-eeEEE
Confidence 11111111 111222211100 01234558899998543 2344444444333333 66666
Q ss_pred eeCChH-HHh-cccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHHH
Q 036236 229 TTRSID-VCG-SMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTIG 296 (557)
Q Consensus 229 TtR~~~-v~~-~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~ 296 (557)
+|.+.. +.. .......+++.++++++..+++...+.......+ .+.+..+++.++|.|..+....
T Consensus 153 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~---~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 153 ATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE---DEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCChHHHHHHH
Confidence 765543 221 1223457889999999999999887654332222 3577889999999987664443
No 60
>PLN03025 replication factor C subunit; Provisional
Probab=98.60 E-value=5.5e-07 Score=89.35 Aligned_cols=180 Identities=15% Similarity=0.128 Sum_probs=103.5
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcc-eEEEEEeCCccCHHHHHHHHHHHh
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFD-CVIWVVVSKDLRLEKIQEDIGKKI 168 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l 168 (557)
..++|.++.++.|..++. .+..+.+.++|++|+||||+|+.+++... ...|. .++-+..+...+.. ..+.+...+
T Consensus 13 ~~~~g~~~~~~~L~~~~~-~~~~~~lll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~eln~sd~~~~~-~vr~~i~~~ 88 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIAR-DGNMPNLILSGPPGTGKTTSILALAHELL--GPNYKEAVLELNASDDRGID-VVRNKIKMF 88 (319)
T ss_pred HHhcCcHHHHHHHHHHHh-cCCCceEEEECCCCCCHHHHHHHHHHHHh--cccCccceeeecccccccHH-HHHHHHHHH
Confidence 468999998988888877 55556678999999999999999998862 12222 12222222222221 122221111
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCccc--cccccccCCCCCCCCcEEEEeeCCh-HHHh-cccCCCc
Q 036236 169 GLFDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWERVD--LTKVGVPLPGPQNTTSKVVFTTRSI-DVCG-SMESHRK 244 (557)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--~~~l~~~l~~~~~~~s~iliTtR~~-~v~~-~~~~~~~ 244 (557)
..... ..-.++.-++|||+++.... ...+...+...... +++++++... .+.. .......
T Consensus 89 ~~~~~---------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~-t~~il~~n~~~~i~~~L~SRc~~ 152 (319)
T PLN03025 89 AQKKV---------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNT-TRFALACNTSSKIIEPIQSRCAI 152 (319)
T ss_pred Hhccc---------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCC-ceEEEEeCCccccchhHHHhhhc
Confidence 10000 00013466999999975321 22232223222233 6677766542 2211 1112357
Q ss_pred eecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHH
Q 036236 245 FPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLAL 292 (557)
Q Consensus 245 ~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai 292 (557)
+++.+++.++....+...+.......+ .+....|++.++|..-.+
T Consensus 153 i~f~~l~~~~l~~~L~~i~~~egi~i~---~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 153 VRFSRLSDQEILGRLMKVVEAEKVPYV---PEGLEAIIFTADGDMRQA 197 (319)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 899999999999999887765443322 256788999999876443
No 61
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.57 E-value=9e-08 Score=90.22 Aligned_cols=98 Identities=17% Similarity=0.067 Sum_probs=65.1
Q ss_pred HHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCc--cCHHHHHHHHHHHhCCCCCCCCCCCH
Q 036236 103 WRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKD--LRLEKIQEDIGKKIGLFDDSWKSKSV 180 (557)
Q Consensus 103 ~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~ 180 (557)
++.+..=.....++|+|++|+|||||++.+++.. . ..+|+.++|+.+.+. .++.++++.+...+-...- .....
T Consensus 7 id~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l-~-~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~--~~~~~ 82 (249)
T cd01128 7 VDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAI-T-KNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTF--DEPPE 82 (249)
T ss_pred eeeecccCCCCEEEEECCCCCCHHHHHHHHHhcc-c-cccCCeEEEEEEccCCCccHHHHHHHhccEEEEecC--CCCHH
Confidence 3444323467889999999999999999999997 3 238999999997776 7899999998333221111 11111
Q ss_pred H------HHHHHHHHH-hcCCcEEEEEccCC
Q 036236 181 E------EKAVDIFRS-LREKRFVLLLDDIW 204 (557)
Q Consensus 181 ~------~~~~~l~~~-l~~k~~LlVlDdv~ 204 (557)
. ...+..... -.++++++++|++.
T Consensus 83 ~~~~~~~~~~~~a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 83 RHVQVAEMVLEKAKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEECHH
Confidence 1 111111111 25799999999984
No 62
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57 E-value=1.2e-06 Score=91.54 Aligned_cols=182 Identities=18% Similarity=0.163 Sum_probs=107.2
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCC------------------CcceEEEEEe
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPI------------------NFDCVIWVVV 151 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~------------------~f~~~~wv~~ 151 (557)
..++|.+..++.|...+..+.-...+.++|+.|+||||+|+.+++...-... .|...+++..
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieida 95 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDA 95 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeec
Confidence 4689999999999999983334456889999999999999999887621000 0111222211
Q ss_pred CCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH-hcCCcEEEEEccCCCc--cccccccccCCCCCCCCcEEEE
Q 036236 152 SKDLRLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRS-LREKRFVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVF 228 (557)
Q Consensus 152 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~ili 228 (557)
.....+. +..+....+... ..+++-++|+|+++.. .....++..+...... +.+|+
T Consensus 96 as~~gvd--------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~-v~fIL 154 (546)
T PRK14957 96 ASRTGVE--------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEY-VKFIL 154 (546)
T ss_pred ccccCHH--------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCC-ceEEE
Confidence 1111111 111122222111 2356679999999643 2344555555443334 65665
Q ss_pred eeCC-hHHH-hcccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCch-HHHHH
Q 036236 229 TTRS-IDVC-GSMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPL-ALLTI 295 (557)
Q Consensus 229 TtR~-~~v~-~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-ai~~~ 295 (557)
+|.+ ..+. ........+++.+++.++....+.+.+....... ..+....|++.++|.+- |+..+
T Consensus 155 ~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~---e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 155 ATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINS---DEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred EECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 4443 3333 2223356799999999999888887654433222 13567789999999774 44444
No 63
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.57 E-value=9.6e-07 Score=93.31 Aligned_cols=192 Identities=14% Similarity=0.121 Sum_probs=108.1
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHH--
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKK-- 167 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~-- 167 (557)
..+||.+..++.|.+++..+.-.+.+.++|+.|+||||+|+.+++.+. -..... +..++ .......+...
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln-C~~~~~---~~pCg----~C~sCr~i~~g~~ 87 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLN-CENAQH---GEPCG----VCQSCTQIDAGRY 87 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc-ccCCCC---CCCCc----ccHHHHHHhccCc
Confidence 468999999999999998434456789999999999999999988751 111100 00000 00111111000
Q ss_pred ---hCCCCCCCCCCCHHHHHHHHHH----HhcCCcEEEEEccCCCccc--cccccccCCCCCCCCcEEEEeeCChH-HH-
Q 036236 168 ---IGLFDDSWKSKSVEEKAVDIFR----SLREKRFVLLLDDIWERVD--LTKVGVPLPGPQNTTSKVVFTTRSID-VC- 236 (557)
Q Consensus 168 ---l~~~~~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~~~--~~~l~~~l~~~~~~~s~iliTtR~~~-v~- 236 (557)
+.+.. ......+.....+.. -..+++-++|||+++.... ...++..+...... +++|++|.+.. +.
T Consensus 88 ~DvlEida--As~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~-v~fILaTtd~~kL~~ 164 (709)
T PRK08691 88 VDLLEIDA--ASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEH-VKFILATTDPHKVPV 164 (709)
T ss_pred cceEEEec--cccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCC-cEEEEEeCCccccch
Confidence 00000 011112222111111 1235667999999964322 33344444332233 66776665432 21
Q ss_pred hcccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHH
Q 036236 237 GSMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTI 295 (557)
Q Consensus 237 ~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 295 (557)
...+....+.+.+++.++....+.+.+........ .+....|++.++|.+.-+..+
T Consensus 165 TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id---~eAL~~Ia~~A~GslRdAlnL 220 (709)
T PRK08691 165 TVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYE---PPALQLLGRAAAGSMRDALSL 220 (709)
T ss_pred HHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHhCCCHHHHHHH
Confidence 11123356889999999999999888765442222 356789999999998554433
No 64
>PRK09087 hypothetical protein; Validated
Probab=98.56 E-value=6.3e-07 Score=83.71 Aligned_cols=144 Identities=16% Similarity=0.129 Sum_probs=87.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRS 190 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 190 (557)
..+.+.|+|++|+|||+|++.++... . ..+++.. .+...+.. .
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~-~-------~~~i~~~------~~~~~~~~-----------------------~ 85 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKS-D-------ALLIHPN------EIGSDAAN-----------------------A 85 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhc-C-------CEEecHH------HcchHHHH-----------------------h
Confidence 45679999999999999999988764 1 1133221 11111111 1
Q ss_pred hcCCcEEEEEccCCCcc-ccccccccCCCCCCCCcEEEEeeCC---------hHHHhcccCCCceecCCCCHHHHHHHHH
Q 036236 191 LREKRFVLLLDDIWERV-DLTKVGVPLPGPQNTTSKVVFTTRS---------IDVCGSMESHRKFPVACLSEEDAWELFR 260 (557)
Q Consensus 191 l~~k~~LlVlDdv~~~~-~~~~l~~~l~~~~~~~s~iliTtR~---------~~v~~~~~~~~~~~l~~L~~~ea~~L~~ 260 (557)
+.+ -+|++||+.... +-+.+...+......+..||+|++. +.+.+.+.....+++++++.++-.+++.
T Consensus 86 ~~~--~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 86 AAE--GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIF 163 (226)
T ss_pred hhc--CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHH
Confidence 111 278889995321 1122222222212212678888873 2234445566789999999999999999
Q ss_pred HHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHHH
Q 036236 261 EKVGQETLESHHDIVELAQTVARECDGLPLALLTIG 296 (557)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~ 296 (557)
+++.......+ +++..-|++++.|..-++..+.
T Consensus 164 ~~~~~~~~~l~---~ev~~~La~~~~r~~~~l~~~l 196 (226)
T PRK09087 164 KLFADRQLYVD---PHVVYYLVSRMERSLFAAQTIV 196 (226)
T ss_pred HHHHHcCCCCC---HHHHHHHHHHhhhhHHHHHHHH
Confidence 98865443232 3677888888888776665433
No 65
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.55 E-value=1.3e-06 Score=91.30 Aligned_cols=181 Identities=15% Similarity=0.147 Sum_probs=106.8
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCc-------------------ceEEEEE
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINF-------------------DCVIWVV 150 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f-------------------~~~~wv~ 150 (557)
..+||.+..++.|.+++..+.-...+.++|+.|+||||+|+.+++... -...+ .-++.+.
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~-c~~~~~~~pCg~C~~C~~i~~g~~~d~~eid 94 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLN-CEKGVSANPCNDCENCREIDEGRFPDLFEVD 94 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhc-CCCCCCcccCCCCHHHHHHhcCCCceEEEEc
Confidence 468999999999999998434445678999999999999999988762 11111 1122222
Q ss_pred eCCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCc--cccccccccCCCCCCCCcEEEE
Q 036236 151 VSKDLRLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVF 228 (557)
Q Consensus 151 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~ili 228 (557)
......+.++ +++++.+.. .-..++.-++|+|+++.. .....++..+...... +++|+
T Consensus 95 aas~~~v~~i-R~l~~~~~~------------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~-~~fIl 154 (509)
T PRK14958 95 AASRTKVEDT-RELLDNIPY------------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSH-VKFIL 154 (509)
T ss_pred ccccCCHHHH-HHHHHHHhh------------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCC-eEEEE
Confidence 1111111111 112111110 011345668999999743 3344454545443334 66666
Q ss_pred eeCCh-HHH-hcccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHH
Q 036236 229 TTRSI-DVC-GSMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLT 294 (557)
Q Consensus 229 TtR~~-~v~-~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~ 294 (557)
+|.+. .+. ........+++.+++.++....+...+...+.... .+....|++.++|.+.-+..
T Consensus 155 attd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~---~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 155 ATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE---NAALDLLARAANGSVRDALS 219 (509)
T ss_pred EECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHH
Confidence 55443 222 11223456889999999988887777654432222 24567889999998865433
No 66
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.55 E-value=3.3e-08 Score=99.30 Aligned_cols=106 Identities=27% Similarity=0.340 Sum_probs=82.9
Q ss_pred ccccceEEEccccccccccCC--CCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCc-cccCCCCCC
Q 036236 449 GWENVRRLSLMQNQIETLSEV--PTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPV-GMSKLGSLE 525 (557)
Q Consensus 449 ~~~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~-~i~~L~~L~ 525 (557)
.+.++.+|.+..|++..+... .++..|+.|+|++|. +..|..+....+.+|++|+||+| .|+.+|+ ++..|..|+
T Consensus 267 ~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~Na-I~rih~d~WsftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le 344 (873)
T KOG4194|consen 267 GLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNA-IQRIHIDSWSFTQKLKELDLSSN-RITRLDEGSFRVLSQLE 344 (873)
T ss_pred eecccceeecccchhhhhhcccccccchhhhhccchhh-hheeecchhhhcccceeEecccc-ccccCChhHHHHHHHhh
Confidence 456777778887777765433 778888888888887 77776665777888888888888 8888854 788888888
Q ss_pred eeeccCCCCcccChH-HHhHhhhhhcCCCCCC
Q 036236 526 LLDISHTFIKELPEE-LKKLLEAIQRAPRPDR 556 (557)
Q Consensus 526 ~L~l~~n~l~~lP~~-i~~L~~L~~L~~~~~~ 556 (557)
.|+|++|+|..|-+. +..|++|+.||++.+.
T Consensus 345 ~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ 376 (873)
T KOG4194|consen 345 ELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE 376 (873)
T ss_pred hhcccccchHHHHhhHHHHhhhhhhhcCcCCe
Confidence 888888888888765 6788888888888764
No 67
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.55 E-value=5e-07 Score=85.16 Aligned_cols=172 Identities=12% Similarity=0.083 Sum_probs=96.9
Q ss_pred ccc-chhHHH-HHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHh
Q 036236 91 TIV-GLQSQL-EQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKI 168 (557)
Q Consensus 91 ~~v-Gr~~~~-~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 168 (557)
+|+ |..... ..+.++.........+.|+|++|+|||+||+.+++.... .. ....+++..... ..+
T Consensus 19 ~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~--~~-~~~~~i~~~~~~------~~~---- 85 (227)
T PRK08903 19 NFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASY--GG-RNARYLDAASPL------LAF---- 85 (227)
T ss_pred ccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHh--CC-CcEEEEehHHhH------HHH----
Confidence 444 554443 344444332345678999999999999999999987621 11 234444433211 000
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCccc--cccccccCCCC-CCCCcEEEEeeCChHHHh--------
Q 036236 169 GLFDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWERVD--LTKVGVPLPGP-QNTTSKVVFTTRSIDVCG-------- 237 (557)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--~~~l~~~l~~~-~~~~s~iliTtR~~~v~~-------- 237 (557)
.. ....-+||+||+..... ...+...+... ..+...+|+|++......
T Consensus 86 --------------------~~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~s 144 (227)
T PRK08903 86 --------------------DF-DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRT 144 (227)
T ss_pred --------------------hh-cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHH
Confidence 01 12234789999964321 12222222211 122134666666433211
Q ss_pred cccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHHHHHh
Q 036236 238 SMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTIGRAM 299 (557)
Q Consensus 238 ~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l 299 (557)
.+.....++++++++++-..++.+.+.......+ ++....+++.+.|++..+..+...+
T Consensus 145 r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~---~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 145 RLGWGLVYELKPLSDADKIAALKAAAAERGLQLA---DEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 2233467899999998877777765433222222 3577888889999998887766544
No 68
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=1.4e-06 Score=92.26 Aligned_cols=198 Identities=16% Similarity=0.151 Sum_probs=110.7
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCC-CCcceEEEEEeCCccCHHHHHHHHHHHh
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENP-INFDCVIWVVVSKDLRLEKIQEDIGKKI 168 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~-~~f~~~~wv~~~~~~~~~~~~~~i~~~l 168 (557)
..+||.+..++.|.+++..+.-...+.++|+.|+||||+|+.+++.+.-.. ....+.-. ..++.....+.|...-
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~i~~g~ 91 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRDIDSGR 91 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHHHHcCC
Confidence 468999999999999998444456779999999999999999987762100 00001000 1111122222221100
Q ss_pred CCCC---CCCCCCCHHHHHHHHHHH----hcCCcEEEEEccCCCc--cccccccccCCCCCCCCcEEEEeeCC-hHHH-h
Q 036236 169 GLFD---DSWKSKSVEEKAVDIFRS----LREKRFVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTRS-IDVC-G 237 (557)
Q Consensus 169 ~~~~---~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~iliTtR~-~~v~-~ 237 (557)
.... +.......++....+... ..++.-++|||+++.. ..+..++..+...... .++|++|.+ ..+. .
T Consensus 92 h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~-~~fIL~Ttd~~kil~T 170 (618)
T PRK14951 92 FVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEY-LKFVLATTDPQKVPVT 170 (618)
T ss_pred CCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCC-eEEEEEECCchhhhHH
Confidence 0000 000111222222222111 1234558999999743 3344555555443333 666655543 3332 2
Q ss_pred cccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHH
Q 036236 238 SMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTI 295 (557)
Q Consensus 238 ~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 295 (557)
.......+++.+++.++..+.+.+.+...+...+ .+....|++.++|.+--+..+
T Consensus 171 IlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie---~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 171 VLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE---PQALRLLARAARGSMRDALSL 225 (618)
T ss_pred HHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 2234567999999999999999887755442222 356788999999987554433
No 69
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.54 E-value=2.7e-06 Score=77.53 Aligned_cols=161 Identities=18% Similarity=0.168 Sum_probs=91.3
Q ss_pred HHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCC-------------------CCcceEEEEEeCC-ccCHHHH
Q 036236 101 QVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENP-------------------INFDCVIWVVVSK-DLRLEKI 160 (557)
Q Consensus 101 ~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~~f~~~~wv~~~~-~~~~~~~ 160 (557)
.+.+.+..+.-...+.++|+.|+|||++|+.+.+...... .+.|. .++.... .... +.
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~-~~ 80 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKV-DQ 80 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCH-HH
Confidence 4555565233447799999999999999999988862110 11111 1111111 1111 11
Q ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCc--cccccccccCCCCCCCCcEEEEeeCChH-HHh
Q 036236 161 QEDIGKKIGLFDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTRSID-VCG 237 (557)
Q Consensus 161 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~iliTtR~~~-v~~ 237 (557)
.+++.+.+... -..+.+-++|+||++.. .....+...+...... +.+|++|++.. +..
T Consensus 81 i~~i~~~~~~~------------------~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~-~~~il~~~~~~~l~~ 141 (188)
T TIGR00678 81 VRELVEFLSRT------------------PQESGRRVVIIEDAERMNEAAANALLKTLEEPPPN-TLFILITPSPEKLLP 141 (188)
T ss_pred HHHHHHHHccC------------------cccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCC-eEEEEEECChHhChH
Confidence 11111111100 01245668999998643 2344455555443334 66776666542 211
Q ss_pred -cccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchH
Q 036236 238 -SMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLA 291 (557)
Q Consensus 238 -~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa 291 (557)
.......+++.+++.++..+.+.+. + .. .+.+..|++.++|.|..
T Consensus 142 ~i~sr~~~~~~~~~~~~~~~~~l~~~-g---i~-----~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 142 TIRSRCQVLPFPPLSEEALLQWLIRQ-G---IS-----EEAAELLLALAGGSPGA 187 (188)
T ss_pred HHHhhcEEeeCCCCCHHHHHHHHHHc-C---CC-----HHHHHHHHHHcCCCccc
Confidence 1123457999999999999988876 2 11 25688999999998853
No 70
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.54 E-value=3e-06 Score=90.95 Aligned_cols=202 Identities=15% Similarity=0.057 Sum_probs=115.9
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCc---ceEEEEEeCCc---cCHHHHHHH
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINF---DCVIWVVVSKD---LRLEKIQED 163 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f---~~~~wv~~~~~---~~~~~~~~~ 163 (557)
+.++|++..+..+.+.+. .+....+.|+|++|+||||+|+.+++.. .....+ ...-|+.+... .+...+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia-~~~~~~vlL~Gp~GtGKTTLAr~i~~~~-~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~ 231 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVA-SPFPQHIILYGPPGVGKTTAARLALEEA-KKLKHTPFAEDAPFVEVDGTTLRWDPREVTNP 231 (615)
T ss_pred HhceeCcHHHHHHHHHHh-cCCCCeEEEECCCCCCHHHHHHHHHHhh-hhccCCcccCCCCeEEEechhccCCHHHHhHH
Confidence 468999999999888876 5566789999999999999999998765 212222 12334444321 122222111
Q ss_pred ---------------HHHHhCCCC----------------CCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCc--cccc
Q 036236 164 ---------------IGKKIGLFD----------------DSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWER--VDLT 210 (557)
Q Consensus 164 ---------------i~~~l~~~~----------------~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~ 210 (557)
.+...+... +..... ....+..+.+.+.++++.++-|+.|.. ..|.
T Consensus 232 llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-d~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~ 310 (615)
T TIGR02903 232 LLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-DPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPK 310 (615)
T ss_pred hcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-CHHHHHHHHHHHhhCeEEeecceeccCCcccch
Confidence 111112110 000111 123466777888888888887766543 3355
Q ss_pred cccccCCCCCCCCcEEEE--eeCChHH-Hhc-ccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhC
Q 036236 211 KVGVPLPGPQNTTSKVVF--TTRSIDV-CGS-MESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECD 286 (557)
Q Consensus 211 ~l~~~l~~~~~~~s~ili--TtR~~~v-~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 286 (557)
.+...+...... ..+++ ||++... ... ......+.+.+++.+|.+.++.+.+........ .++.+.|.+.+.
T Consensus 311 ~ik~~~~~~~~~-~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~ls---~eal~~L~~ys~ 386 (615)
T TIGR02903 311 YIKKLFEEGAPA-DFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHLA---AGVEELIARYTI 386 (615)
T ss_pred hhhhhcccCccc-eEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHCCC
Confidence 555444443333 34444 5564331 111 112346789999999999999998764332111 345566666665
Q ss_pred CCchHHHHHHHH
Q 036236 287 GLPLALLTIGRA 298 (557)
Q Consensus 287 G~PLai~~~~~~ 298 (557)
.-+-++..++..
T Consensus 387 ~gRraln~L~~~ 398 (615)
T TIGR02903 387 EGRKAVNILADV 398 (615)
T ss_pred cHHHHHHHHHHH
Confidence 556677666544
No 71
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.53 E-value=1.8e-08 Score=93.24 Aligned_cols=101 Identities=32% Similarity=0.295 Sum_probs=57.3
Q ss_pred cccceEEEccccccccccCCCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCccccCCCCCCeeec
Q 036236 450 WENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVGMSKLGSLELLDI 529 (557)
Q Consensus 450 ~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~i~~L~~L~~L~l 529 (557)
.+++|+|.++.|.+..+.....+++|..|+|++|. +.++..- -.++-+.+.|.|++| .+..+. .+++|.+|.+||+
T Consensus 306 ~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~-Ls~~~Gw-h~KLGNIKtL~La~N-~iE~LS-GL~KLYSLvnLDl 381 (490)
T KOG1259|consen 306 APKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNL-LAECVGW-HLKLGNIKTLKLAQN-KIETLS-GLRKLYSLVNLDL 381 (490)
T ss_pred ccceeEEeccccceeeehhhhhcccceEeecccch-hHhhhhh-HhhhcCEeeeehhhh-hHhhhh-hhHhhhhheeccc
Confidence 34566666666666665555666666666666665 4333322 334455555556555 555543 5566666666666
Q ss_pred cCCCCcccCh--HHHhHhhhhhcCCCC
Q 036236 530 SHTFIKELPE--ELKKLLEAIQRAPRP 554 (557)
Q Consensus 530 ~~n~l~~lP~--~i~~L~~L~~L~~~~ 554 (557)
++|+|+++-+ +||+|+-|.+|.+.+
T Consensus 382 ~~N~Ie~ldeV~~IG~LPCLE~l~L~~ 408 (490)
T KOG1259|consen 382 SSNQIEELDEVNHIGNLPCLETLRLTG 408 (490)
T ss_pred cccchhhHHHhcccccccHHHHHhhcC
Confidence 6666665542 466666666544443
No 72
>PLN03150 hypothetical protein; Provisional
Probab=98.52 E-value=1.7e-07 Score=101.31 Aligned_cols=101 Identities=20% Similarity=0.256 Sum_probs=82.6
Q ss_pred cceEEEcccccccc-ccC-CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCc-cCCccccCCCCCCeee
Q 036236 452 NVRRLSLMQNQIET-LSE-VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIF-QLPVGMSKLGSLELLD 528 (557)
Q Consensus 452 ~l~~l~l~~~~~~~-~~~-~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~-~lP~~i~~L~~L~~L~ 528 (557)
.+..|+|++|.+.. +|. ...+++|+.|+|++|...+.+|.. ++.+++|++|+|++| .+. .+|.++++|++|++|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~-~~~l~~L~~LdLs~N-~lsg~iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYN-SFNGSIPESLGQLTSLRILN 496 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECCCC-CCCCCCchHHhcCCCCCEEE
Confidence 47889999998864 333 378999999999999855688877 899999999999999 555 8899999999999999
Q ss_pred ccCCCCc-ccChHHHhH-hhhhhcCCCC
Q 036236 529 ISHTFIK-ELPEELKKL-LEAIQRAPRP 554 (557)
Q Consensus 529 l~~n~l~-~lP~~i~~L-~~L~~L~~~~ 554 (557)
|++|+++ .+|..++.+ .++..+++.+
T Consensus 497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~ 524 (623)
T PLN03150 497 LNGNSLSGRVPAALGGRLLHRASFNFTD 524 (623)
T ss_pred CcCCcccccCChHHhhccccCceEEecC
Confidence 9999987 799998764 3444554443
No 73
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.52 E-value=2.8e-08 Score=91.98 Aligned_cols=105 Identities=23% Similarity=0.389 Sum_probs=92.0
Q ss_pred ccccccceEEEccccccccccCC-CCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCccccCCCCCC
Q 036236 447 VKGWENVRRLSLMQNQIETLSEV-PTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVGMSKLGSLE 525 (557)
Q Consensus 447 ~~~~~~l~~l~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~i~~L~~L~ 525 (557)
+..|..+..+++++|.++.+..+ .-.|.++.|++++|. +..+.. +..+++|..||||+| .+.++-.+-.+|.|..
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~-i~~v~n--La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNR-IRTVQN--LAELPQLQLLDLSGN-LLAECVGWHLKLGNIK 355 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccc-eeeehh--hhhcccceEeecccc-hhHhhhhhHhhhcCEe
Confidence 44678899999999999988766 456899999999998 766655 788999999999999 8888887888899999
Q ss_pred eeeccCCCCcccChHHHhHhhhhhcCCCCCC
Q 036236 526 LLDISHTFIKELPEELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 526 ~L~l~~n~l~~lP~~i~~L~~L~~L~~~~~~ 556 (557)
+|+|++|.|+.| +++++|.+|.+||+++++
T Consensus 356 tL~La~N~iE~L-SGL~KLYSLvnLDl~~N~ 385 (490)
T KOG1259|consen 356 TLKLAQNKIETL-SGLRKLYSLVNLDLSSNQ 385 (490)
T ss_pred eeehhhhhHhhh-hhhHhhhhheeccccccc
Confidence 999999999887 478999999999999886
No 74
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.52 E-value=2.3e-06 Score=88.51 Aligned_cols=196 Identities=16% Similarity=0.125 Sum_probs=104.9
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhC
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIG 169 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 169 (557)
..+||.+.....|...+..+.-.+.+.++|++|+||||+|+.+++.... ..... + .++........+...-.
T Consensus 14 ~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~-~~~~~---~----~pc~~c~~c~~i~~g~~ 85 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNC-ENRKG---V----EPCNECRACRSIDEGTF 85 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc-ccCCC---C----CCCcccHHHHHHhcCCC
Confidence 4689999888888888873333356899999999999999999887621 11000 0 00000000111100000
Q ss_pred CCC---CCCCCCCHHHHHHHHHHH-----hcCCcEEEEEccCCCc--cccccccccCCCCCCCCcEEEEeeCCh-HHHh-
Q 036236 170 LFD---DSWKSKSVEEKAVDIFRS-----LREKRFVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTRSI-DVCG- 237 (557)
Q Consensus 170 ~~~---~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~iliTtR~~-~v~~- 237 (557)
... +.......++. ..+.+. ..+++-++|+|+++.. .....+...+...... ..+|++|.++ .+..
T Consensus 86 ~dv~el~aa~~~gid~i-R~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~-vv~Ilattn~~kl~~~ 163 (472)
T PRK14962 86 MDVIELDAASNRGIDEI-RKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSH-VVFVLATTNLEKVPPT 163 (472)
T ss_pred CccEEEeCcccCCHHHH-HHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCc-EEEEEEeCChHhhhHH
Confidence 000 00001111111 112221 2345679999999643 2234444444332223 5555454442 2322
Q ss_pred cccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCC-chHHHHHHHH
Q 036236 238 SMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGL-PLALLTIGRA 298 (557)
Q Consensus 238 ~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLai~~~~~~ 298 (557)
.......+.+.+++.++....+.+.+.......+ .+....|++.++|. +.++..+-..
T Consensus 164 L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~---~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 164 IISRCQVIEFRNISDELIIKRLQEVAEAEGIEID---REALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred HhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 1233457899999999999998887654332222 35677888888655 6666666543
No 75
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.51 E-value=9.3e-08 Score=63.58 Aligned_cols=41 Identities=34% Similarity=0.501 Sum_probs=34.8
Q ss_pred CCCcEEEeecCCCCccCCccccCCCCCCeeeccCCCCcccCh
Q 036236 498 PSLKVLKISNCGNIFQLPVGMSKLGSLELLDISHTFIKELPE 539 (557)
Q Consensus 498 ~~L~~L~Ls~~~~~~~lP~~i~~L~~L~~L~l~~n~l~~lP~ 539 (557)
++|++|++++| .++.+|..+++|++|++|++++|+|+.+|.
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 47899999999 999999889999999999999999987763
No 76
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=2.5e-06 Score=87.88 Aligned_cols=190 Identities=17% Similarity=0.128 Sum_probs=107.6
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhC
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIG 169 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 169 (557)
..+||.+..++.|.+.+..+.-.+.+.++|+.|+||||+|+.+++...- ....+ ...+........|.....
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC-~~~~~-------~~pCg~C~~C~~i~~~~~ 84 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNC-SNGPT-------SDPCGTCHNCISIKNSNH 84 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcC-cCCCC-------CCCccccHHHHHHhccCC
Confidence 4689999999999988883333458999999999999999999875410 00000 001111111122211111
Q ss_pred CCCCC---CCCCCHHHHHHHHHHH-----hcCCcEEEEEccCCCc--cccccccccCCCCCCCCcEEEEeeC-ChHHHh-
Q 036236 170 LFDDS---WKSKSVEEKAVDIFRS-----LREKRFVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTR-SIDVCG- 237 (557)
Q Consensus 170 ~~~~~---~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~iliTtR-~~~v~~- 237 (557)
...-. .+....++... +.+. +.++.-++|+|++... .....+...+...... +++|++|. ...+..
T Consensus 85 ~Dv~eidaas~~~vddIR~-Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~-v~fIlatte~~Kl~~t 162 (491)
T PRK14964 85 PDVIEIDAASNTSVDDIKV-ILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPH-VKFILATTEVKKIPVT 162 (491)
T ss_pred CCEEEEecccCCCHHHHHH-HHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCC-eEEEEEeCChHHHHHH
Confidence 00000 00111122111 1111 1345568999999643 2344555555443344 66666554 333322
Q ss_pred cccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHH
Q 036236 238 SMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLAL 292 (557)
Q Consensus 238 ~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai 292 (557)
.......+.+.+++.++....+.+.+.......+ .+....|++.++|.+-.+
T Consensus 163 I~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~---~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 163 IISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHD---EESLKLIAENSSGSMRNA 214 (491)
T ss_pred HHHhheeeecccccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 2234567899999999999999988765442222 356778999999988644
No 77
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.51 E-value=3e-07 Score=99.99 Aligned_cols=95 Identities=18% Similarity=0.290 Sum_probs=62.2
Q ss_pred ccceEEEccccccccccCCCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCccccCCCCCCeeecc
Q 036236 451 ENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVGMSKLGSLELLDIS 530 (557)
Q Consensus 451 ~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~i~~L~~L~~L~l~ 530 (557)
++|+.|++++|.++.+|... ..+|+.|+|++|. +..+|.. +. .+|++|+|++| .++.+|..+. .+|++|+|+
T Consensus 220 ~nL~~L~Ls~N~LtsLP~~l-~~~L~~L~Ls~N~-L~~LP~~-l~--s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls 291 (754)
T PRK15370 220 GNIKTLYANSNQLTSIPATL-PDTIQEMELSINR-ITELPER-LP--SALQSLDLFHN-KISCLPENLP--EELRYLSVY 291 (754)
T ss_pred cCCCEEECCCCccccCChhh-hccccEEECcCCc-cCcCChh-Hh--CCCCEEECcCC-ccCccccccC--CCCcEEECC
Confidence 45666666666666555421 2356777777776 6666665 32 46778888877 7777777665 478888888
Q ss_pred CCCCcccChHHHhHhhhhhcCCCCC
Q 036236 531 HTFIKELPEELKKLLEAIQRAPRPD 555 (557)
Q Consensus 531 ~n~l~~lP~~i~~L~~L~~L~~~~~ 555 (557)
+|+++.+|..+. .+|+.|+++++
T Consensus 292 ~N~Lt~LP~~lp--~sL~~L~Ls~N 314 (754)
T PRK15370 292 DNSIRTLPAHLP--SGITHLNVQSN 314 (754)
T ss_pred CCccccCcccch--hhHHHHHhcCC
Confidence 888887776553 35666666554
No 78
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.50 E-value=6.8e-09 Score=109.54 Aligned_cols=109 Identities=21% Similarity=0.316 Sum_probs=87.7
Q ss_pred cCCcccccccceEEEccccccccccCC--CCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCccccC
Q 036236 443 EAPAVKGWENVRRLSLMQNQIETLSEV--PTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVGMSK 520 (557)
Q Consensus 443 ~~~~~~~~~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~i~~ 520 (557)
.+|-+.+..+|+.|.+++|.+..+|.. .++..|+.|+|++|. +..+|.. +.++..|++|...+| .+..+| .+.+
T Consensus 375 c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNk-L~~Lp~t-va~~~~L~tL~ahsN-~l~~fP-e~~~ 450 (1081)
T KOG0618|consen 375 CFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNK-LTTLPDT-VANLGRLHTLRAHSN-QLLSFP-ELAQ 450 (1081)
T ss_pred chhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccch-hhhhhHH-HHhhhhhHHHhhcCC-ceeech-hhhh
Confidence 356677778888888888888888765 778888888888888 8888876 788888888888888 888888 8888
Q ss_pred CCCCCeeeccCCCCcc--cChHHHhHhhhhhcCCCCCC
Q 036236 521 LGSLELLDISHTFIKE--LPEELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 521 L~~L~~L~l~~n~l~~--lP~~i~~L~~L~~L~~~~~~ 556 (557)
|+.|+.+|+|.|+++. +|..... ++|++||++|++
T Consensus 451 l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 451 LPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred cCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence 9999999999988774 3433322 789999988875
No 79
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.50 E-value=1e-06 Score=89.99 Aligned_cols=199 Identities=14% Similarity=0.132 Sum_probs=109.2
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEE-eCCccCHHHHHHHHHHHh
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVV-VSKDLRLEKIQEDIGKKI 168 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i~~~l 168 (557)
..++|.+..++.|.+++..+.-...+.++|+.|+||||+|..+++... -....+...|.. ....+......+.+....
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~-c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~ 94 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVN-CQRMIDDADYLQEVTEPCGECESCRDFDAGT 94 (397)
T ss_pred hhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhc-CCCCcCcccccccCCCCCCCCHHHHHHhcCC
Confidence 468999999999999988333345688999999999999999988872 111111111110 011111112222222111
Q ss_pred CCCCCCC---CCCCHHHHHHHHHHHh-----cCCcEEEEEccCCCc--cccccccccCCCCCCCCcEEEEee-CChHHHh
Q 036236 169 GLFDDSW---KSKSVEEKAVDIFRSL-----REKRFVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTT-RSIDVCG 237 (557)
Q Consensus 169 ~~~~~~~---~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~iliTt-R~~~v~~ 237 (557)
....... .....++.. .+.+.+ .+.+-++|+|+++.. ..+..+...+...... +.+|++| +...+..
T Consensus 95 ~~n~~~~~~~~~~~id~Ir-~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~-t~~Il~t~~~~kl~~ 172 (397)
T PRK14955 95 SLNISEFDAASNNSVDDIR-LLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPH-AIFIFATTELHKIPA 172 (397)
T ss_pred CCCeEeecccccCCHHHHH-HHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCC-eEEEEEeCChHHhHH
Confidence 1100000 111122222 222333 245568899998643 2344555555443333 6665555 4333332
Q ss_pred c-ccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHH
Q 036236 238 S-MESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLT 294 (557)
Q Consensus 238 ~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~ 294 (557)
. ......+++.+++.++..+.+...+.......+ .+.+..|++.++|.+--+..
T Consensus 173 tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~---~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 173 TIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVD---ADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 1 122346889999999999888887643321121 35788999999998864433
No 80
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.50 E-value=2e-07 Score=108.12 Aligned_cols=116 Identities=24% Similarity=0.317 Sum_probs=100.0
Q ss_pred CCCcccCCcccccccceEEEccccccccccCC-CCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCc
Q 036236 438 GAGLKEAPAVKGWENVRRLSLMQNQIETLSEV-PTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPV 516 (557)
Q Consensus 438 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~ 516 (557)
+..++.+|..-.+.+++.|++.+|.+..++.. ..+++|+.|+|+++..++.+|. ++.+++|+.|+|++|..+..+|.
T Consensus 598 ~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~ 675 (1153)
T PLN03210 598 KYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPS 675 (1153)
T ss_pred CCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccch
Confidence 33445556555678999999999999887654 7899999999999877888886 78899999999999988999999
Q ss_pred cccCCCCCCeeeccCC-CCcccChHHHhHhhhhhcCCCCCC
Q 036236 517 GMSKLGSLELLDISHT-FIKELPEELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 517 ~i~~L~~L~~L~l~~n-~l~~lP~~i~~L~~L~~L~~~~~~ 556 (557)
+|++|++|++|++++| .++.+|..+ ++++|++|++++++
T Consensus 676 si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 676 SIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCS 715 (1153)
T ss_pred hhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCC
Confidence 9999999999999987 699999887 89999999988764
No 81
>PRK05642 DNA replication initiation factor; Validated
Probab=98.49 E-value=1.2e-06 Score=82.45 Aligned_cols=152 Identities=15% Similarity=0.217 Sum_probs=89.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 036236 112 VGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSL 191 (557)
Q Consensus 112 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 191 (557)
...+.|+|..|+|||.|++.+++... ..-..++|++... +... ...+.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~---~~~~~v~y~~~~~------~~~~--------------------~~~~~~~~ 95 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFE---QRGEPAVYLPLAE------LLDR--------------------GPELLDNL 95 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH---hCCCcEEEeeHHH------HHhh--------------------hHHHHHhh
Confidence 36789999999999999999988762 1123466665432 1110 01222333
Q ss_pred cCCcEEEEEccCCCc---ccccc-ccccCCCCCCCCcEEEEeeCChHH---------HhcccCCCceecCCCCHHHHHHH
Q 036236 192 REKRFVLLLDDIWER---VDLTK-VGVPLPGPQNTTSKVVFTTRSIDV---------CGSMESHRKFPVACLSEEDAWEL 258 (557)
Q Consensus 192 ~~k~~LlVlDdv~~~---~~~~~-l~~~l~~~~~~~s~iliTtR~~~v---------~~~~~~~~~~~l~~L~~~ea~~L 258 (557)
.+-. +||+||+... ..|+. +...+......+..+|+|++.... .+.+.....+++++++.++-.++
T Consensus 96 ~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~i 174 (234)
T PRK05642 96 EQYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRA 174 (234)
T ss_pred hhCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHH
Confidence 3222 6889999522 23322 322232222222678888875321 22334456789999999999999
Q ss_pred HHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHHH
Q 036236 259 FREKVGQETLESHHDIVELAQTVARECDGLPLALLTIG 296 (557)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~ 296 (557)
+..++.......+ +++..-|++++.|..-.+..+-
T Consensus 175 l~~ka~~~~~~l~---~ev~~~L~~~~~~d~r~l~~~l 209 (234)
T PRK05642 175 LQLRASRRGLHLT---DEVGHFILTRGTRSMSALFDLL 209 (234)
T ss_pred HHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHHHHH
Confidence 9866543322222 3677788888887665554433
No 82
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.48 E-value=2e-06 Score=89.99 Aligned_cols=194 Identities=15% Similarity=0.140 Sum_probs=107.8
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhC
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIG 169 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 169 (557)
..++|++..++.+.+++..+.-.+.+.++|+.|+||||+|+.+++... ... |... ..++.....+.+.....
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~--C~~-----~~~~-~~Cg~C~sCr~i~~~~h 87 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAIN--CLN-----PKDG-DCCNSCSVCESINTNQS 87 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc--CCC-----CCCC-CCCcccHHHHHHHcCCC
Confidence 468999999999999997444456789999999999999999988862 111 1110 11111122222221111
Q ss_pred CCC---CCCCCCCHHHHHHHHHHH-----hcCCcEEEEEccCCCc--cccccccccCCCCCCCCcEEEEeeCC-hHHH-h
Q 036236 170 LFD---DSWKSKSVEEKAVDIFRS-----LREKRFVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTRS-IDVC-G 237 (557)
Q Consensus 170 ~~~---~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~iliTtR~-~~v~-~ 237 (557)
... +.......++. +.+.+. ..+++-++|+|+++.. .....+...+...... +.+|++|.. ..+. .
T Consensus 88 ~DiieIdaas~igVd~I-ReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~-tvfIL~Tt~~~KLl~T 165 (605)
T PRK05896 88 VDIVELDAASNNGVDEI-RNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKH-VVFIFATTEFQKIPLT 165 (605)
T ss_pred CceEEeccccccCHHHH-HHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCc-EEEEEECCChHhhhHH
Confidence 000 00001112221 111111 1223447999999643 2334444444333333 555555543 3332 1
Q ss_pred cccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCch-HHHHHH
Q 036236 238 SMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPL-ALLTIG 296 (557)
Q Consensus 238 ~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-ai~~~~ 296 (557)
.......+++.+++.++....+...+.......+ .+.+..+++.++|.+- |+..+-
T Consensus 166 I~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is---~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 166 IISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE---DNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred HHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHHH
Confidence 2233567899999999999988887654332222 2467889999999775 444433
No 83
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.48 E-value=1.6e-06 Score=91.97 Aligned_cols=193 Identities=17% Similarity=0.161 Sum_probs=110.0
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhC
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIG 169 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 169 (557)
..+||.+..++.|.+.+..+.-...+.++|+.|+||||+|+.+++.+.- ..... ...+......+.|...-.
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c-~~~~~-------~~pCg~C~~C~~i~~g~~ 87 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNC-ETGIT-------ATPCGECDNCREIEQGRF 87 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhh-ccCCC-------CCCCCCCHHHHHHHcCCC
Confidence 4689999999999999983333455789999999999999999888621 11000 011111222223321100
Q ss_pred CCC---CCCCCCCHHHHHHHHHHH-----hcCCcEEEEEccCCCc--cccccccccCCCCCCCCcEEEEeeCC-hHHH-h
Q 036236 170 LFD---DSWKSKSVEEKAVDIFRS-----LREKRFVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTRS-IDVC-G 237 (557)
Q Consensus 170 ~~~---~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~iliTtR~-~~v~-~ 237 (557)
.+. +.......++.. .+.+. ..++.-++|||+++.. .....++..+...... .++|++|.+ ..+. .
T Consensus 88 ~D~ieidaas~~~VddiR-~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~-v~FIL~Tt~~~kLl~T 165 (647)
T PRK07994 88 VDLIEIDAASRTKVEDTR-ELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEH-VKFLLATTDPQKLPVT 165 (647)
T ss_pred CCceeecccccCCHHHHH-HHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCC-eEEEEecCCccccchH
Confidence 000 000011222222 22221 2456679999999643 3344554444433333 566655554 3332 1
Q ss_pred cccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHH
Q 036236 238 SMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTI 295 (557)
Q Consensus 238 ~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 295 (557)
..+....|.+.+++.++....+.+.+....... ..+....|++.++|.+--+..+
T Consensus 166 I~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~---e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 166 ILSRCLQFHLKALDVEQIRQQLEHILQAEQIPF---EPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred HHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 223356799999999999999988764333222 1356678999999988644333
No 84
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.48 E-value=2.7e-06 Score=89.52 Aligned_cols=190 Identities=15% Similarity=0.126 Sum_probs=104.9
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhC
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIG 169 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 169 (557)
..++|.+..++.|.+++..+.-.+.+.++|+.|+||||+|+.+++...- ..... ...+........+...-.
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c-~~~~~-------~~pcg~C~~C~~i~~~~~ 87 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNC-ETGVT-------ATPCGVCSACLEIDSGRF 87 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcC-CCCCC-------CCCCCCCHHHHHHhcCCC
Confidence 4689999999999999983334456789999999999999999887621 10000 000010011111110000
Q ss_pred CC---CCCCCCCCHHHHHHHHHHH-----hcCCcEEEEEccCCCcc--ccccccccCCCCCCCCcEEEEeeCChH-HH-h
Q 036236 170 LF---DDSWKSKSVEEKAVDIFRS-----LREKRFVLLLDDIWERV--DLTKVGVPLPGPQNTTSKVVFTTRSID-VC-G 237 (557)
Q Consensus 170 ~~---~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~~~s~iliTtR~~~-v~-~ 237 (557)
.. .+.......++.. .+.+. ..+++-++|+|+++... ....++..+...... +.+|++|.++. +. .
T Consensus 88 ~d~~ei~~~~~~~vd~ir-~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~-~~fIL~t~d~~kil~t 165 (527)
T PRK14969 88 VDLIEVDAASNTQVDAMR-ELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEH-VKFILATTDPQKIPVT 165 (527)
T ss_pred CceeEeeccccCCHHHHH-HHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCC-EEEEEEeCChhhCchh
Confidence 00 0000011122211 12121 13456699999996542 234444445443333 66666554432 22 1
Q ss_pred cccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHH
Q 036236 238 SMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLAL 292 (557)
Q Consensus 238 ~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai 292 (557)
.......+++.+++.++..+.+.+.+....... ..+....|++.++|.+--+
T Consensus 166 I~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~---~~~al~~la~~s~Gslr~a 217 (527)
T PRK14969 166 VLSRCLQFNLKQMPPPLIVSHLQHILEQENIPF---DATALQLLARAAAGSMRDA 217 (527)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 112245789999999999988888764433221 1346688999999987533
No 85
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.48 E-value=4.4e-06 Score=90.60 Aligned_cols=167 Identities=23% Similarity=0.306 Sum_probs=96.9
Q ss_pred CcccchhHHHH---HHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCcc-CHHHHHHHHH
Q 036236 90 PTIVGLQSQLE---QVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDL-RLEKIQEDIG 165 (557)
Q Consensus 90 ~~~vGr~~~~~---~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~ 165 (557)
..|+|++..+. .+.+.+. .+....+.|+|++|+||||+|+.+++.. ...|. .++... ...
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~-~~~~~slLL~GPpGtGKTTLA~aIA~~~---~~~f~-----~lna~~~~i~------- 91 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIK-ADRVGSLILYGPPGVGKTTLARIIANHT---RAHFS-----SLNAVLAGVK------- 91 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHh-cCCCceEEEECCCCCCHHHHHHHHHHHh---cCcce-----eehhhhhhhH-------
Confidence 45899988774 4555565 5566778999999999999999999876 23331 111100 000
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHh--cCCcEEEEEccCCCc--cccccccccCCCCCCCCcEEEE--eeCChH--HH-
Q 036236 166 KKIGLFDDSWKSKSVEEKAVDIFRSL--REKRFVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVF--TTRSID--VC- 236 (557)
Q Consensus 166 ~~l~~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~ili--TtR~~~--v~- 236 (557)
+..+......+.+ .+++.+|||||++.. ...+.+...+. .+ ..++| ||.++. +.
T Consensus 92 -------------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g-~IiLI~aTTenp~~~l~~ 154 (725)
T PRK13341 92 -------------DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NG-TITLIGATTENPYFEVNK 154 (725)
T ss_pred -------------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---Cc-eEEEEEecCCChHhhhhh
Confidence 0111111221111 246779999999643 22333333222 23 44554 344432 11
Q ss_pred hcccCCCceecCCCCHHHHHHHHHHHhC-------CCccCCCccHHHHHHHHHHHhCCCchHH
Q 036236 237 GSMESHRKFPVACLSEEDAWELFREKVG-------QETLESHHDIVELAQTVARECDGLPLAL 292 (557)
Q Consensus 237 ~~~~~~~~~~l~~L~~~ea~~L~~~~~~-------~~~~~~~~~~~~~~~~i~~~~~G~PLai 292 (557)
........+.+++|+.++...++.+.+. ...... -.+....|++.+.|..-.+
T Consensus 155 aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I---~deaL~~La~~s~GD~R~l 214 (725)
T PRK13341 155 ALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDL---EPEAEKHLVDVANGDARSL 214 (725)
T ss_pred HhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCC---CHHHHHHHHHhCCCCHHHH
Confidence 1112245789999999999999988764 111111 2356788999998875433
No 86
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.47 E-value=2e-07 Score=100.92 Aligned_cols=94 Identities=21% Similarity=0.223 Sum_probs=54.2
Q ss_pred cceEEEccccccccccCCCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCccccCCCCCCeeeccC
Q 036236 452 NVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVGMSKLGSLELLDISH 531 (557)
Q Consensus 452 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~i~~L~~L~~L~l~~ 531 (557)
++..|.+++|.+..+|.. ..+|+.|++++|. +..+|.. ..+|+.|++++| .++.+|... .+|++|+|++
T Consensus 363 ~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N~-Lt~LP~l----~s~L~~LdLS~N-~LssIP~l~---~~L~~L~Ls~ 431 (788)
T PRK15387 363 ELYKLWAYNNRLTSLPAL--PSGLKELIVSGNR-LTSLPVL----PSELKELMVSGN-RLTSLPMLP---SGLLSLSVYR 431 (788)
T ss_pred ccceehhhccccccCccc--ccccceEEecCCc-ccCCCCc----ccCCCEEEccCC-cCCCCCcch---hhhhhhhhcc
Confidence 455555555555554432 2356666666665 5555542 245666666666 566666432 3456666666
Q ss_pred CCCcccChHHHhHhhhhhcCCCCCC
Q 036236 532 TFIKELPEELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 532 n~l~~lP~~i~~L~~L~~L~~~~~~ 556 (557)
|+|+.||.+++++++|..|++++|+
T Consensus 432 NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 432 NQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred CcccccChHHhhccCCCeEECCCCC
Confidence 6666666666666666666665553
No 87
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=7.2e-06 Score=86.38 Aligned_cols=197 Identities=13% Similarity=0.143 Sum_probs=110.5
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhC
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIG 169 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 169 (557)
..++|.+..++.|.+.+..+.-...+.++|+.|+||||+|+.+++... -....+. ..++.....+.|.....
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~-C~~~~~~-------~pCg~C~sC~~i~~g~h 87 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALN-CETAPTG-------EPCNTCEQCRKVTQGMH 87 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhcc-ccCCCCC-------CCCcccHHHHHHhcCCC
Confidence 467999999999999888333357888999999999999999998872 1111100 01111112222211100
Q ss_pred CCCCCC---CCCCHHHHHHHHHHH-----hcCCcEEEEEccCCCc--cccccccccCCCCCCCCcEEEEeeCC-hHHHhc
Q 036236 170 LFDDSW---KSKSVEEKAVDIFRS-----LREKRFVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTRS-IDVCGS 238 (557)
Q Consensus 170 ~~~~~~---~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~iliTtR~-~~v~~~ 238 (557)
...... .....++. ..+.+. ..+++-++|+|+++.. .....+...+...... ..+|++|.+ ..+...
T Consensus 88 pDv~eId~a~~~~Id~i-R~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~-~ifILaTt~~~kll~T 165 (624)
T PRK14959 88 VDVVEIDGASNRGIDDA-KRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPAR-VTFVLATTEPHKFPVT 165 (624)
T ss_pred CceEEEecccccCHHHH-HHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCC-EEEEEecCChhhhhHH
Confidence 000000 01112211 122222 2356679999999643 2334454444332233 556655544 333221
Q ss_pred -ccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCc-hHHHHHHHHh
Q 036236 239 -MESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLP-LALLTIGRAM 299 (557)
Q Consensus 239 -~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-Lai~~~~~~l 299 (557)
......+++.+++.++....+...+.......+ .+.+..|++.++|.+ .|+..+...+
T Consensus 166 I~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id---~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 166 IVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYD---PAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 223457899999999999988886654332222 356788999999975 5666665443
No 88
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=7e-06 Score=83.36 Aligned_cols=180 Identities=13% Similarity=0.151 Sum_probs=102.6
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccC-----CCCcceE-EEEEeCCccCHHHHHHH
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLEN-----PINFDCV-IWVVVSKDLRLEKIQED 163 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~-----~~~f~~~-~wv~~~~~~~~~~~~~~ 163 (557)
..++|.+..++.+.+.+..+.-.+.+.++|++|+|||++|+.+.+..... ...|... +-+.......... ...
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-i~~ 95 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDD-IRN 95 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHH-HHH
Confidence 46899999999999999833345688999999999999999998876210 0112111 1111111111111 112
Q ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCcc--ccccccccCCCCCCCCcEEEEeeC-ChHHH-hcc
Q 036236 164 IGKKIGLFDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWERV--DLTKVGVPLPGPQNTTSKVVFTTR-SIDVC-GSM 239 (557)
Q Consensus 164 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~~~s~iliTtR-~~~v~-~~~ 239 (557)
+.+.+... -..+++-++|+|+++... .+..+...+...... +.+|++|. ...+. ...
T Consensus 96 l~~~~~~~------------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~-~~~Il~~~~~~kl~~~l~ 156 (367)
T PRK14970 96 LIDQVRIP------------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAH-AIFILATTEKHKIIPTIL 156 (367)
T ss_pred HHHHHhhc------------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCc-eEEEEEeCCcccCCHHHH
Confidence 22211100 012345589999986432 234443334332223 55555553 32221 112
Q ss_pred cCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHH
Q 036236 240 ESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLAL 292 (557)
Q Consensus 240 ~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai 292 (557)
.....+++.++++++....+...+...+...+ .+.+..+++.++|.+-.+
T Consensus 157 sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~---~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 157 SRCQIFDFKRITIKDIKEHLAGIAVKEGIKFE---DDALHIIAQKADGALRDA 206 (367)
T ss_pred hcceeEecCCccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHHHH
Confidence 23457899999999999888886654432222 357788899999876544
No 89
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.41 E-value=6.6e-07 Score=96.96 Aligned_cols=88 Identities=28% Similarity=0.303 Sum_probs=55.1
Q ss_pred CCcccCCcccccccceEEEccccccccccCCCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCccc
Q 036236 439 AGLKEAPAVKGWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVGM 518 (557)
Q Consensus 439 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~i 518 (557)
+.++.+|.. .++|+.|++++|.++.+|.. .++|+.|++++|. +..+|.. +..|+.|+|++| .++.+|..
T Consensus 232 N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~N~-L~~Lp~l----p~~L~~L~Ls~N-~Lt~LP~~- 300 (788)
T PRK15387 232 NNLTSLPAL--PPELRTLEVSGNQLTSLPVL--PPGLLELSIFSNP-LTHLPAL----PSGLCKLWIFGN-QLTSLPVL- 300 (788)
T ss_pred CcCCCCCCC--CCCCcEEEecCCccCcccCc--ccccceeeccCCc-hhhhhhc----hhhcCEEECcCC-cccccccc-
Confidence 344444432 34566666666666655532 3456666666665 5555542 245777778777 77777753
Q ss_pred cCCCCCCeeeccCCCCcccCh
Q 036236 519 SKLGSLELLDISHTFIKELPE 539 (557)
Q Consensus 519 ~~L~~L~~L~l~~n~l~~lP~ 539 (557)
+++|++|+|++|+|+.+|.
T Consensus 301 --p~~L~~LdLS~N~L~~Lp~ 319 (788)
T PRK15387 301 --PPGLQELSVSDNQLASLPA 319 (788)
T ss_pred --ccccceeECCCCccccCCC
Confidence 3678899999998887765
No 90
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.40 E-value=2.6e-06 Score=86.20 Aligned_cols=172 Identities=21% Similarity=0.277 Sum_probs=99.0
Q ss_pred CcccchhHHHHHHHHHHhc---c---------CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCH
Q 036236 90 PTIVGLQSQLEQVWRCLVV---E---------ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRL 157 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~---~---------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 157 (557)
..+.|+++.+++|.+.+.. . ...+-+.|+|++|+|||++|+.+++.. ...| +.+..
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l---~~~~-----~~v~~---- 189 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATF-----IRVVG---- 189 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC---CCCE-----Eecch----
Confidence 3578999999999887741 1 235669999999999999999999987 2333 22211
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-cCCcEEEEEccCCCcc----------------ccccccccCCCC-
Q 036236 158 EKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSL-REKRFVLLLDDIWERV----------------DLTKVGVPLPGP- 219 (557)
Q Consensus 158 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~----------------~~~~l~~~l~~~- 219 (557)
..+.... ++ ........+.+.. ...+.+|+||+++... .+..+...+...
T Consensus 190 ~~l~~~~---~g---------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 190 SELVRKY---IG---------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD 257 (364)
T ss_pred HHHHHHh---hh---------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence 1111111 00 0111222222222 3467899999986421 011111112111
Q ss_pred CCCCcEEEEeeCChHH-----HhcccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCc
Q 036236 220 QNTTSKVVFTTRSIDV-----CGSMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLP 289 (557)
Q Consensus 220 ~~~~s~iliTtR~~~v-----~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 289 (557)
..++.+||.||..... .....-...+.++..+.++..++|..++.........+ ...+++.+.|..
T Consensus 258 ~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 258 PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 1223778888875432 11112245789999999999999998875543222222 356777777654
No 91
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.40 E-value=3.9e-07 Score=89.58 Aligned_cols=100 Identities=15% Similarity=0.149 Sum_probs=66.5
Q ss_pred HHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCcc--CHHHHHHHHHHHhCCCCCCCCCC
Q 036236 101 QVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDL--RLEKIQEDIGKKIGLFDDSWKSK 178 (557)
Q Consensus 101 ~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~ 178 (557)
++++++..=+.....+|+|++|+||||||+.+++... ..+|+.++||.+.+.. .+.++++.+...+-... .+..
T Consensus 158 rvID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~--~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st--~d~~ 233 (416)
T PRK09376 158 RIIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSIT--TNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVAST--FDEP 233 (416)
T ss_pred eeeeeecccccCceEEEeCCCCCChhHHHHHHHHHHH--hhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEEC--CCCC
Confidence 4455555335677889999999999999999999983 2389999999998877 77788888763221111 1111
Q ss_pred CHHHH-----HHHHHHH--hcCCcEEEEEccCC
Q 036236 179 SVEEK-----AVDIFRS--LREKRFVLLLDDIW 204 (557)
Q Consensus 179 ~~~~~-----~~~l~~~--l~~k~~LlVlDdv~ 204 (557)
..... +-...++ -.+++++|++|++.
T Consensus 234 ~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 234 AERHVQVAEMVIEKAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChH
Confidence 11111 1111122 36799999999984
No 92
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.39 E-value=1.5e-06 Score=80.89 Aligned_cols=182 Identities=17% Similarity=0.172 Sum_probs=99.0
Q ss_pred cccchh-HHHHHHHHHHhcc--CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHH
Q 036236 91 TIVGLQ-SQLEQVWRCLVVE--ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKK 167 (557)
Q Consensus 91 ~~vGr~-~~~~~l~~~L~~~--~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 167 (557)
.++|-. +..-.....+..+ .....+.|+|..|+|||.|.+++++.... ...-..+++++ ..++...+...
T Consensus 10 fv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~-~~~~~~v~y~~------~~~f~~~~~~~ 82 (219)
T PF00308_consen 10 FVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQK-QHPGKRVVYLS------AEEFIREFADA 82 (219)
T ss_dssp S--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHH-HCTTS-EEEEE------HHHHHHHHHHH
T ss_pred CCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHh-ccccccceeec------HHHHHHHHHHH
Confidence 345653 2233333444322 23456899999999999999999998722 11222455553 34555555555
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCcc---ccc-cccccCCCC-CCCCcEEEEeeCChH--------
Q 036236 168 IGLFDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWERV---DLT-KVGVPLPGP-QNTTSKVVFTTRSID-------- 234 (557)
Q Consensus 168 l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~~-~l~~~l~~~-~~~~s~iliTtR~~~-------- 234 (557)
+.. ... ..+...++ .-=+|+|||++... .|. .+...+... ..+ .+||+|++...
T Consensus 83 ~~~-------~~~----~~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~-k~li~ts~~~P~~l~~~~~ 149 (219)
T PF00308_consen 83 LRD-------GEI----EEFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESG-KQLILTSDRPPSELSGLLP 149 (219)
T ss_dssp HHT-------TSH----HHHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTT-SEEEEEESS-TTTTTTS-H
T ss_pred HHc-------ccc----hhhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhC-CeEEEEeCCCCccccccCh
Confidence 432 111 23334444 33488999996432 122 122222111 123 68999996532
Q ss_pred -HHhcccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHH
Q 036236 235 -VCGSMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTI 295 (557)
Q Consensus 235 -v~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 295 (557)
+.+.+...-.+++.+++.++-.+++.+.+.......+ ++++.-|++.+.+..-.+..+
T Consensus 150 ~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~---~~v~~~l~~~~~~~~r~L~~~ 208 (219)
T PF00308_consen 150 DLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELP---EEVIEYLARRFRRDVRELEGA 208 (219)
T ss_dssp HHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S----HHHHHHHHHHTTSSHHHHHHH
T ss_pred hhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCc---HHHHHHHHHhhcCCHHHHHHH
Confidence 3344556668999999999999999998765443322 356777777776655544433
No 93
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.39 E-value=5.9e-06 Score=87.75 Aligned_cols=197 Identities=15% Similarity=0.128 Sum_probs=111.3
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcc--eEEEEEeCCccCHHHHHHHHHHH
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFD--CVIWVVVSKDLRLEKIQEDIGKK 167 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i~~~ 167 (557)
..++|.+..++.|.+++..+.-...+.++|+.|+||||+|+.+++...- ..... ...+- .+....-.+.|...
T Consensus 24 ~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c-~~~~~~~~~~~~----~cg~c~~C~~i~~g 98 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNY-EGPDGDGGPTID----LCGVGEHCQAIMEG 98 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCc-CCccccCCCccc----cCcccHHHHHHhcC
Confidence 4689999999999999984444567899999999999999999887621 11000 00000 01111111222221
Q ss_pred hCCCC---CCCCCCCHHHHHHHHHHHh-----cCCcEEEEEccCCCcc--ccccccccCCCCCCCCcEEEEee-CChHHH
Q 036236 168 IGLFD---DSWKSKSVEEKAVDIFRSL-----REKRFVLLLDDIWERV--DLTKVGVPLPGPQNTTSKVVFTT-RSIDVC 236 (557)
Q Consensus 168 l~~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~~~s~iliTt-R~~~v~ 236 (557)
..... +.......++.. .+.+.+ .+++-++|+|+++... ....+...+...... +.+|++| ....+.
T Consensus 99 ~h~Dv~e~~a~s~~gvd~IR-eIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~-~~fIl~tte~~kll 176 (598)
T PRK09111 99 RHVDVLEMDAASHTGVDDIR-EIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPH-VKFIFATTEIRKVP 176 (598)
T ss_pred CCCceEEecccccCCHHHHH-HHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCC-eEEEEEeCChhhhh
Confidence 11000 000112222222 222222 2345589999996432 344455555443334 6665554 433332
Q ss_pred hc-ccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHHH
Q 036236 237 GS-MESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTIG 296 (557)
Q Consensus 237 ~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~ 296 (557)
.. ......+++.+++.++....+.+.+........ .+....|++.++|.+.-+....
T Consensus 177 ~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~---~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 177 VTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE---DEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 22 223457899999999999999887754432222 2567889999999986554433
No 94
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.37 E-value=6.6e-06 Score=90.35 Aligned_cols=190 Identities=13% Similarity=0.060 Sum_probs=107.3
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhC
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIG 169 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 169 (557)
..+||.+..++.|...+..+.-.+.+.++|+.|+||||+|+.+++.+.- ...... ..+......+.|...-.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C-~~~~~~-------~pCg~C~sC~~~~~g~~ 86 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNC-VEGPTS-------TPCGECDSCVALAPGGP 86 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCc-ccCCCC-------CCCcccHHHHHHHcCCC
Confidence 4689999999999999984334466899999999999999999888721 111100 00011111111111100
Q ss_pred CCC-----CCCCCCCHHHHHHHHHHH-----hcCCcEEEEEccCCCc--cccccccccCCCCCCCCcEEEEeeCC-hHHH
Q 036236 170 LFD-----DSWKSKSVEEKAVDIFRS-----LREKRFVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTRS-IDVC 236 (557)
Q Consensus 170 ~~~-----~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~iliTtR~-~~v~ 236 (557)
... +......+++... +.+. ..++.-++|||+++.. .....|+..+..-... +.+|++|.+ ..+.
T Consensus 87 ~~~dv~eidaas~~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~-~~fIl~tt~~~kLl 164 (824)
T PRK07764 87 GSLDVTEIDAASHGGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEH-LKFIFATTEPDKVI 164 (824)
T ss_pred CCCcEEEecccccCCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCC-eEEEEEeCChhhhh
Confidence 000 0001111222221 2221 2345568999999643 3344455555443344 666655543 3343
Q ss_pred h-cccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHH
Q 036236 237 G-SMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLAL 292 (557)
Q Consensus 237 ~-~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai 292 (557)
. .......|++.+++.++..+++.+.+........ .+....|++.++|.+..+
T Consensus 165 ~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id---~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 165 GTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVE---PGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred HHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 2 2234567899999999999888887644332222 245678899999988544
No 95
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=9.6e-06 Score=85.67 Aligned_cols=194 Identities=14% Similarity=0.094 Sum_probs=107.5
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhC
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIG 169 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 169 (557)
..++|.+..++.|.+++..+.-.+.+.++|+.|+||||+|+.+++...- ....+ + ..++.....+.|...-+
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c-~~~~~---~----~pCg~C~~C~~i~~~~~ 84 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNC-AQGPT---A----TPCGVCESCVALAPNGP 84 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc-ccCCC---C----CcccccHHHHHhhcccC
Confidence 4689999999999999984334456789999999999999999987621 11110 0 01111111112111000
Q ss_pred CCC-----CCCCCCCHHHH---HHHHHHH-hcCCcEEEEEccCCCc--cccccccccCCCCCCCCcEEEEee-CChHHHh
Q 036236 170 LFD-----DSWKSKSVEEK---AVDIFRS-LREKRFVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTT-RSIDVCG 237 (557)
Q Consensus 170 ~~~-----~~~~~~~~~~~---~~~l~~~-l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~iliTt-R~~~v~~ 237 (557)
... +.......++. ...+... ..+++-++|+|++... .....++..+...... ..+|++| ....+..
T Consensus 85 ~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~-~~fIL~tte~~kll~ 163 (584)
T PRK14952 85 GSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEH-LIFIFATTEPEKVLP 163 (584)
T ss_pred CCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCC-eEEEEEeCChHhhHH
Confidence 000 00011112221 1111111 1345568999998643 3344455555443334 5555544 4444332
Q ss_pred -cccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCch-HHHHH
Q 036236 238 -SMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPL-ALLTI 295 (557)
Q Consensus 238 -~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-ai~~~ 295 (557)
.......+++.+++.++..+.+.+.+.......+ .+....|++.++|.+- ++..+
T Consensus 164 TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~---~~al~~Ia~~s~GdlR~aln~L 220 (584)
T PRK14952 164 TIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD---DAVYPLVIRAGGGSPRDTLSVL 220 (584)
T ss_pred HHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 2233567999999999999888887654432222 2466788999999875 44443
No 96
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=1.3e-05 Score=85.19 Aligned_cols=197 Identities=14% Similarity=0.136 Sum_probs=108.5
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEE-eCCccCHHHHHHHHHHHh
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVV-VSKDLRLEKIQEDIGKKI 168 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i~~~l 168 (557)
..++|.+..+..|.+.+..+.-...+.++|+.|+||||+|+.+++... -....+...|.. +...+......+.+...-
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~-c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~ 94 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVN-CQRMIDDPVYLQEVTEPCGECESCRDFDAGT 94 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhC-CCCcCCccccccccCCCCccCHHHHHHhccC
Confidence 468999999999999888333446688999999999999999988872 111111011111 001111112222221111
Q ss_pred CCCCCCC---CCCCHHHHHHHHHHH-----hcCCcEEEEEccCCCcc--ccccccccCCCCCCCCcEEEEee-CChHHHh
Q 036236 169 GLFDDSW---KSKSVEEKAVDIFRS-----LREKRFVLLLDDIWERV--DLTKVGVPLPGPQNTTSKVVFTT-RSIDVCG 237 (557)
Q Consensus 169 ~~~~~~~---~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~~~s~iliTt-R~~~v~~ 237 (557)
....... .....++... +.+. ..+.+-++|+|+++... ....+...+..-... +.+|++| +...+..
T Consensus 95 ~~n~~~~d~~s~~~vd~Ir~-l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~-tv~IL~t~~~~kLl~ 172 (620)
T PRK14954 95 SLNISEFDAASNNSVDDIRQ-LRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPH-AIFIFATTELHKIPA 172 (620)
T ss_pred CCCeEEecccccCCHHHHHH-HHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCC-eEEEEEeCChhhhhH
Confidence 1000000 1111233222 2222 23445588999986432 344455555443333 5555544 4333322
Q ss_pred -cccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHH
Q 036236 238 -SMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLAL 292 (557)
Q Consensus 238 -~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai 292 (557)
.......+++.+++.++....+.+.+.......+ .+.+..|++.++|..--+
T Consensus 173 TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~---~eal~~La~~s~Gdlr~a 225 (620)
T PRK14954 173 TIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQID---ADALQLIARKAQGSMRDA 225 (620)
T ss_pred HHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHH
Confidence 2334567999999999998888876643331122 356788999999966533
No 97
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.34 E-value=1.4e-07 Score=99.91 Aligned_cols=102 Identities=25% Similarity=0.344 Sum_probs=93.0
Q ss_pred ccceEEEccccccccccCC-CCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCccccCCCCCCeeec
Q 036236 451 ENVRRLSLMQNQIETLSEV-PTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVGMSKLGSLELLDI 529 (557)
Q Consensus 451 ~~l~~l~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~i~~L~~L~~L~l 529 (557)
-+|.+|++++|.+..+|.. ..+++|+.|.++.|. +..+|.+ ..++.+|++|.|.+| .+..+|.++..+++|++||+
T Consensus 45 v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~-i~~vp~s-~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~~Ldl 121 (1081)
T KOG0618|consen 45 VKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNY-IRSVPSS-CSNMRNLQYLNLKNN-RLQSLPASISELKNLQYLDL 121 (1081)
T ss_pred eeeEEeeccccccccCCchhhhHHHHhhcccchhh-HhhCchh-hhhhhcchhheeccc-hhhcCchhHHhhhccccccc
Confidence 3599999999999887765 778899999999998 9999977 899999999999999 99999999999999999999
Q ss_pred cCCCCcccChHHHhHhhhhhcCCCCC
Q 036236 530 SHTFIKELPEELKKLLEAIQRAPRPD 555 (557)
Q Consensus 530 ~~n~l~~lP~~i~~L~~L~~L~~~~~ 555 (557)
|+|.+..+|.-|..++.+..++.+++
T Consensus 122 S~N~f~~~Pl~i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 122 SFNHFGPIPLVIEVLTAEEELAASNN 147 (1081)
T ss_pred chhccCCCchhHHhhhHHHHHhhhcc
Confidence 99999999999999999988887765
No 98
>PLN03150 hypothetical protein; Provisional
Probab=98.33 E-value=5.4e-07 Score=97.33 Aligned_cols=81 Identities=22% Similarity=0.275 Sum_probs=73.0
Q ss_pred CccEEEcccccccccccchHhhcCCCCcEEEeecCCCCc-cCCccccCCCCCCeeeccCCCCc-ccChHHHhHhhhhhcC
Q 036236 474 HLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIF-QLPVGMSKLGSLELLDISHTFIK-ELPEELKKLLEAIQRA 551 (557)
Q Consensus 474 ~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~-~lP~~i~~L~~L~~L~l~~n~l~-~lP~~i~~L~~L~~L~ 551 (557)
.+..|+|++|...+.+|.. ++++++|+.|+|++| .+. .+|.+++.|++|++|+|++|+++ .+|.++++|++|++|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~-i~~L~~L~~L~Ls~N-~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPND-ISKLRHLQSINLSGN-SIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496 (623)
T ss_pred EEEEEECCCCCccccCCHH-HhCCCCCCEEECCCC-cccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEE
Confidence 4788999999855678877 999999999999999 665 89999999999999999999988 6899999999999999
Q ss_pred CCCCC
Q 036236 552 PRPDR 556 (557)
Q Consensus 552 ~~~~~ 556 (557)
+++++
T Consensus 497 Ls~N~ 501 (623)
T PLN03150 497 LNGNS 501 (623)
T ss_pred CcCCc
Confidence 98764
No 99
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.33 E-value=6.1e-07 Score=65.02 Aligned_cols=57 Identities=32% Similarity=0.437 Sum_probs=52.1
Q ss_pred ccceEEEccccccccccCC--CCCCCccEEEcccccccccccchHhhcCCCCcEEEeecC
Q 036236 451 ENVRRLSLMQNQIETLSEV--PTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNC 508 (557)
Q Consensus 451 ~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~ 508 (557)
++++.|.+++|.+..+|.. ..+++|++|++++|. +..+++..|..+++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCC
Confidence 3689999999999998854 789999999999998 88999888999999999999999
No 100
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.32 E-value=3.6e-06 Score=86.92 Aligned_cols=168 Identities=11% Similarity=0.081 Sum_probs=101.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 036236 112 VGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSL 191 (557)
Q Consensus 112 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 191 (557)
...+.|+|..|+|||+|++.+++.... ...-..+++++ ..++...+...++.. ......+.+.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~-~~~~~~v~yv~------~~~f~~~~~~~l~~~---------~~~~~~~~~~~ 204 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIES-NFSDLKVSYMS------GDEFARKAVDILQKT---------HKEIEQFKNEI 204 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHH-hCCCCeEEEEE------HHHHHHHHHHHHHHh---------hhHHHHHHHHh
Confidence 356899999999999999999987621 11122344443 345666666655421 01223344444
Q ss_pred cCCcEEEEEccCCCcc---c-cccccccCCCCCCCCcEEEEeeCChH---------HHhcccCCCceecCCCCHHHHHHH
Q 036236 192 REKRFVLLLDDIWERV---D-LTKVGVPLPGPQNTTSKVVFTTRSID---------VCGSMESHRKFPVACLSEEDAWEL 258 (557)
Q Consensus 192 ~~k~~LlVlDdv~~~~---~-~~~l~~~l~~~~~~~s~iliTtR~~~---------v~~~~~~~~~~~l~~L~~~ea~~L 258 (557)
+ +.-+|||||+.... . .+.+...+......+..||+|+.... +...+...-.+.+++++.++-.++
T Consensus 205 ~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~i 283 (450)
T PRK14087 205 C-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAI 283 (450)
T ss_pred c-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHH
Confidence 4 34488999995322 1 22333323222222256888876432 233344556788999999999999
Q ss_pred HHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHHHH
Q 036236 259 FREKVGQETLESHHDIVELAQTVARECDGLPLALLTIGR 297 (557)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~ 297 (557)
+.+++....... .--++...-|++.++|.|-.+.-+..
T Consensus 284 L~~~~~~~gl~~-~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 284 IKKEIKNQNIKQ-EVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHHHHhcCCCC-CCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 999875433111 12246889999999999987765553
No 101
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.32 E-value=1.3e-07 Score=77.63 Aligned_cols=89 Identities=20% Similarity=0.263 Sum_probs=71.1
Q ss_pred ccccceEEEccccccccccCC--CCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCccccCCCCCCe
Q 036236 449 GWENVRRLSLMQNQIETLSEV--PTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVGMSKLGSLEL 526 (557)
Q Consensus 449 ~~~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~i~~L~~L~~ 526 (557)
....+..+++++|.++.+|.. ..++.+++|++++|. +..+|.. +..++.||.|+++.| .+...|.-|..|.+|-+
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE-~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEE-LAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDM 127 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHH-HhhhHHhhhcccccC-ccccchHHHHHHHhHHH
Confidence 344567778888888877765 566678888888887 8888888 788888888888888 78888888888888888
Q ss_pred eeccCCCCcccChH
Q 036236 527 LDISHTFIKELPEE 540 (557)
Q Consensus 527 L~l~~n~l~~lP~~ 540 (557)
|+..+|.+.+||-.
T Consensus 128 Lds~~na~~eid~d 141 (177)
T KOG4579|consen 128 LDSPENARAEIDVD 141 (177)
T ss_pred hcCCCCccccCcHH
Confidence 88888888888866
No 102
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.32 E-value=4.8e-06 Score=83.86 Aligned_cols=69 Identities=19% Similarity=0.153 Sum_probs=57.3
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHH
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQE 162 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 162 (557)
..+++.+..++.+...|. ..+.+.++|++|+|||++|+.+++.. .....++.+.||.++...+..++..
T Consensus 175 ~d~~i~e~~le~l~~~L~---~~~~iil~GppGtGKT~lA~~la~~l-~~~~~~~~v~~VtFHpsySYeDFI~ 243 (459)
T PRK11331 175 NDLFIPETTIETILKRLT---IKKNIILQGPPGVGKTFVARRLAYLL-TGEKAPQRVNMVQFHQSYSYEDFIQ 243 (459)
T ss_pred hcccCCHHHHHHHHHHHh---cCCCEEEECCCCCCHHHHHHHHHHHh-cCCcccceeeEEeecccccHHHHhc
Confidence 457888999999999998 56688889999999999999999987 3445788899999998877666554
No 103
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.32 E-value=1.8e-05 Score=82.40 Aligned_cols=194 Identities=12% Similarity=0.092 Sum_probs=107.7
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhC
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIG 169 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 169 (557)
..++|.+..++.|...+..+.-.++..++|+.|+||||+|+.+++.... ....+. ..+....-...+.....
T Consensus 14 deiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c-~~~~~~-------~pC~~C~~C~~~~~~~h 85 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVC-EQGPSS-------TPCDTCIQCQSALENRH 85 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcC-CCCCCC-------CCCcccHHHHHHhhcCC
Confidence 4689999999999999984444456789999999999999998887621 111000 00000000111110000
Q ss_pred CCC---CCCCCCCHHHHHHHHHHH----hcCCcEEEEEccCCCc--cccccccccCCCCCCCCcEEEEeeCChH-HH-hc
Q 036236 170 LFD---DSWKSKSVEEKAVDIFRS----LREKRFVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTRSID-VC-GS 238 (557)
Q Consensus 170 ~~~---~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~iliTtR~~~-v~-~~ 238 (557)
... +.......++....+... ..+++-++|+|+++.. .....++..+...... +++|++|.+.. +. ..
T Consensus 86 ~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~-t~FIL~ttd~~kL~~tI 164 (535)
T PRK08451 86 IDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSY-VKFILATTDPLKLPATI 164 (535)
T ss_pred CeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCc-eEEEEEECChhhCchHH
Confidence 000 000001122222222110 1245568999999643 2234444444433334 67776665532 11 11
Q ss_pred ccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHH
Q 036236 239 MESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTI 295 (557)
Q Consensus 239 ~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 295 (557)
......+++.+++.++....+.+.+...+.... .+.+..|++.++|.+--+..+
T Consensus 165 ~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~---~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 165 LSRTQHFRFKQIPQNSIISHLKTILEKEGVSYE---PEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred HhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHH
Confidence 223467899999999999998877654442222 357789999999998555444
No 104
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=5.1e-06 Score=88.99 Aligned_cols=195 Identities=14% Similarity=0.140 Sum_probs=111.4
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhC
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIG 169 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 169 (557)
..++|.+..++.|..++..+.-...+.++|+.|+||||+|+.+++... ...... ....++.....+.+.....
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~-c~~~~~------~~~~c~~c~~c~~i~~~~~ 88 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN-CTTNDP------KGRPCGTCEMCRAIAEGSA 88 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc-CCCCCC------CCCCCccCHHHHHHhcCCC
Confidence 468999999999999888333446678999999999999999998762 101000 0011122233334433221
Q ss_pred CCC---CCCCCCCHHHHHHHHHHHh-----cCCcEEEEEccCCCc--cccccccccCCCCCCCCcEEEEeeCC-hHHHh-
Q 036236 170 LFD---DSWKSKSVEEKAVDIFRSL-----REKRFVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTRS-IDVCG- 237 (557)
Q Consensus 170 ~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~iliTtR~-~~v~~- 237 (557)
... +.......++. ..+.+.+ .+++-++|+|+++.. .....+...+...... +.+|+++.+ ..+..
T Consensus 89 ~d~~~i~~~~~~~vd~i-r~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~-tv~Il~t~~~~kll~t 166 (585)
T PRK14950 89 VDVIEMDAASHTSVDDA-REIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPH-AIFILATTEVHKVPAT 166 (585)
T ss_pred CeEEEEeccccCCHHHH-HHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCC-eEEEEEeCChhhhhHH
Confidence 110 00011122222 2222222 245668999998643 2344454444433333 566665543 23322
Q ss_pred cccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHHH
Q 036236 238 SMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTIG 296 (557)
Q Consensus 238 ~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~ 296 (557)
.......+.+.+++.++....+...+...+...+ .+.+..|++.++|.+..+....
T Consensus 167 I~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~---~eal~~La~~s~Gdlr~al~~L 222 (585)
T PRK14950 167 ILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLE---PGALEAIARAATGSMRDAENLL 222 (585)
T ss_pred HHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 1223457889999999999888887654432222 3567899999999986554433
No 105
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.31 E-value=1.4e-05 Score=85.50 Aligned_cols=185 Identities=14% Similarity=0.138 Sum_probs=104.2
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhC
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIG 169 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 169 (557)
..++|.+..++.|..++..+.-.+.+.++|+.|+||||+|+.+++...- ....+ .+ .+....... .+
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC-~~~~~--~~-------~pC~~C~~~---~~ 84 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNC-SHKTD--LL-------EPCQECIEN---VN 84 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcc-cccCC--CC-------CchhHHHHh---hc
Confidence 4689999999999999984444567789999999999999999887621 01000 00 000000000 00
Q ss_pred CCCC-----CCCCCCHHHHHHHHHHHh-----cCCcEEEEEccCCCc--cccccccccCCCCCCCCcEEEE-eeCChHHH
Q 036236 170 LFDD-----SWKSKSVEEKAVDIFRSL-----REKRFVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVF-TTRSIDVC 236 (557)
Q Consensus 170 ~~~~-----~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~ili-TtR~~~v~ 236 (557)
...+ .......++ +..+.+.+ .+++-++|+|++... ..+..++..+...... +.+|+ |++...+.
T Consensus 85 ~~~Dvieidaasn~~vd~-IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~-tifILaTte~~KLl 162 (725)
T PRK07133 85 NSLDIIEMDAASNNGVDE-IRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKH-VIFILATTEVHKIP 162 (725)
T ss_pred CCCcEEEEeccccCCHHH-HHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCc-eEEEEEcCChhhhh
Confidence 0000 000011221 12222222 355668999998643 2344444444333333 55554 44444443
Q ss_pred h-cccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHH
Q 036236 237 G-SMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLAL 292 (557)
Q Consensus 237 ~-~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai 292 (557)
. .......+++.+++.++....+...+...+.... .+.+..|++.++|.+--+
T Consensus 163 ~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id---~eAl~~LA~lS~GslR~A 216 (725)
T PRK07133 163 LTILSRVQRFNFRRISEDEIVSRLEFILEKENISYE---KNALKLIAKLSSGSLRDA 216 (725)
T ss_pred HHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 2 2233468999999999999888876544332221 246778999999977533
No 106
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.31 E-value=1.3e-06 Score=95.05 Aligned_cols=94 Identities=20% Similarity=0.304 Sum_probs=50.6
Q ss_pred cceEEEccccccccccCCCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCccccCCCCCCeeeccC
Q 036236 452 NVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVGMSKLGSLELLDISH 531 (557)
Q Consensus 452 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~i~~L~~L~~L~l~~ 531 (557)
+++.|++++|.+..+|... .++|+.|++++|+ +..+|.. +. .+|++|+|++| .++.+|..+. .+|++|++++
T Consensus 242 ~L~~L~Ls~N~L~~LP~~l-~s~L~~L~Ls~N~-L~~LP~~-l~--~sL~~L~Ls~N-~Lt~LP~~lp--~sL~~L~Ls~ 313 (754)
T PRK15370 242 TIQEMELSINRITELPERL-PSALQSLDLFHNK-ISCLPEN-LP--EELRYLSVYDN-SIRTLPAHLP--SGITHLNVQS 313 (754)
T ss_pred cccEEECcCCccCcCChhH-hCCCCEEECcCCc-cCccccc-cC--CCCcEEECCCC-ccccCcccch--hhHHHHHhcC
Confidence 4566666666665554331 2356666666555 5555554 21 35666666666 5665655443 3566666666
Q ss_pred CCCcccChHHHhHhhhhhcCCCCC
Q 036236 532 TFIKELPEELKKLLEAIQRAPRPD 555 (557)
Q Consensus 532 n~l~~lP~~i~~L~~L~~L~~~~~ 555 (557)
|+++.+|..+. ++|+.|+++.+
T Consensus 314 N~Lt~LP~~l~--~sL~~L~Ls~N 335 (754)
T PRK15370 314 NSLTALPETLP--PGLKTLEAGEN 335 (754)
T ss_pred CccccCCcccc--ccceeccccCC
Confidence 66666655442 34555554443
No 107
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=1.3e-05 Score=85.74 Aligned_cols=180 Identities=13% Similarity=0.164 Sum_probs=106.4
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccC--------------------CCCcceEEEE
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLEN--------------------PINFDCVIWV 149 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~--------------------~~~f~~~~wv 149 (557)
..++|.+..++.|..++..+.-.+.+.++|+.|+||||+|+.++....-. ..+|+. ..+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~~l 95 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-HEL 95 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-EEe
Confidence 46899999999999999833344668999999999999999988875200 012221 111
Q ss_pred EeCCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCc--cccccccccCCCCCCCCcEEE
Q 036236 150 VVSKDLRLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVV 227 (557)
Q Consensus 150 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~il 227 (557)
.........++. .++.++... -..+++-++|+|++... .....+...+...... +.+|
T Consensus 96 d~~~~~~vd~Ir-~li~~~~~~------------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~-tifI 155 (614)
T PRK14971 96 DAASNNSVDDIR-NLIEQVRIP------------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSY-AIFI 155 (614)
T ss_pred cccccCCHHHHH-HHHHHHhhC------------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCC-eEEE
Confidence 111111111111 111111100 01234558899998643 2344555555443333 5555
Q ss_pred E-eeCChHHHh-cccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHH
Q 036236 228 F-TTRSIDVCG-SMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALL 293 (557)
Q Consensus 228 i-TtR~~~v~~-~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~ 293 (557)
+ |+....+.. .......+++.+++.++....+.+.+...+.... .+.+..|++.++|..--+.
T Consensus 156 L~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~---~~al~~La~~s~gdlr~al 220 (614)
T PRK14971 156 LATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE---PEALNVIAQKADGGMRDAL 220 (614)
T ss_pred EEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 5 444444332 2234567899999999999999887655442222 2467889999999775443
No 108
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=2e-05 Score=81.96 Aligned_cols=179 Identities=12% Similarity=0.148 Sum_probs=104.9
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCC-C-----------------cceEEEEEe
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPI-N-----------------FDCVIWVVV 151 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~-~-----------------f~~~~wv~~ 151 (557)
..++|.+..+..+.+++..+.-.+.+.++|+.|+||||+|+.++....-... . +...+++..
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eida 95 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDA 95 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeC
Confidence 4679999999999999984334456788999999999999999887621000 0 001111111
Q ss_pred CCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH-----hcCCcEEEEEccCCCc--cccccccccCCCCCCCCc
Q 036236 152 SKDLRLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRS-----LREKRFVLLLDDIWER--VDLTKVGVPLPGPQNTTS 224 (557)
Q Consensus 152 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s 224 (557)
+.. ...++ ...+.+. ..+++-++|+|+++.. .....+...+...... .
T Consensus 96 as~-----------------------~gvd~-ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~-~ 150 (486)
T PRK14953 96 ASN-----------------------RGIDD-IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPR-T 150 (486)
T ss_pred ccC-----------------------CCHHH-HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCC-e
Confidence 110 11111 1122222 2345679999998643 2234444444433333 5
Q ss_pred EEEEee-CChHHHh-cccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHHH
Q 036236 225 KVVFTT-RSIDVCG-SMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTIG 296 (557)
Q Consensus 225 ~iliTt-R~~~v~~-~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~ 296 (557)
.+|++| +...+.. .......+.+.+++.++....+...+...+...+ .+.+..|++.++|.+..+....
T Consensus 151 v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id---~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 151 IFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYE---EKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 555544 4333322 1223457899999999999888887654332222 2567788999999876554443
No 109
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.29 E-value=1e-05 Score=90.04 Aligned_cols=180 Identities=12% Similarity=0.105 Sum_probs=99.6
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCC---CCcceEEE-EEeCCccCHHHHHHHHH
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENP---INFDCVIW-VVVSKDLRLEKIQEDIG 165 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~---~~f~~~~w-v~~~~~~~~~~~~~~i~ 165 (557)
..++||+.++.+++..|. .....-+.++|++|+||||+|+.++....... .-.+..+| +.++.-..
T Consensus 187 d~~iGr~~ei~~~i~~l~-r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~a--------- 256 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILL-RRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQA--------- 256 (852)
T ss_pred CcccCCHHHHHHHHHHHh-cCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhc---------
Confidence 468999999999999988 44555667999999999999999998862110 01222232 22221000
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHhc--CCcEEEEEccCCCcc-------ccc--cccccCCCCCCCCcEEEEeeCChH
Q 036236 166 KKIGLFDDSWKSKSVEEKAVDIFRSLR--EKRFVLLLDDIWERV-------DLT--KVGVPLPGPQNTTSKVVFTTRSID 234 (557)
Q Consensus 166 ~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~-------~~~--~l~~~l~~~~~~~s~iliTtR~~~ 234 (557)
... .....++....+...+. +++.+|++|++.... ..+ .+..+ ....|.-++|-||...+
T Consensus 257 ------g~~-~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp--~l~~G~l~~IgaTT~~e 327 (852)
T TIGR03345 257 ------GAS-VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKP--ALARGELRTIAATTWAE 327 (852)
T ss_pred ------ccc-cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhH--HhhCCCeEEEEecCHHH
Confidence 000 11122233333333332 468999999985321 111 12222 22344467777666533
Q ss_pred HHh-------cccCCCceecCCCCHHHHHHHHHHHhCCCcc-CCCccHHHHHHHHHHHhCCC
Q 036236 235 VCG-------SMESHRKFPVACLSEEDAWELFREKVGQETL-ESHHDIVELAQTVARECDGL 288 (557)
Q Consensus 235 v~~-------~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~-~~~~~~~~~~~~i~~~~~G~ 288 (557)
... .......+.+++++.++..+++......-.. ..-.-..+....+++.+.+.
T Consensus 328 ~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 328 YKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred HhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 211 1123457999999999999997544321110 00011134556667766654
No 110
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.28 E-value=1.1e-07 Score=95.49 Aligned_cols=97 Identities=23% Similarity=0.326 Sum_probs=62.6
Q ss_pred cceEEEccccccccccCC-CCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCccccCCCCCCeeecc
Q 036236 452 NVRRLSLMQNQIETLSEV-PTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVGMSKLGSLELLDIS 530 (557)
Q Consensus 452 ~l~~l~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~i~~L~~L~~L~l~ 530 (557)
-|+.|-+++|++..+|.. .....|..|+.++|. +..+|.. ++.+.+|+.|.++.| .+..+|..++.| .|..||+|
T Consensus 144 pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsq-l~~l~slr~l~vrRn-~l~~lp~El~~L-pLi~lDfS 219 (722)
T KOG0532|consen 144 PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQ-LGYLTSLRDLNVRRN-HLEDLPEELCSL-PLIRLDFS 219 (722)
T ss_pred cceeEEEecCccccCCcccccchhHHHhhhhhhh-hhhchHH-hhhHHHHHHHHHhhh-hhhhCCHHHhCC-ceeeeecc
Confidence 356666666666665543 455666666666666 6666665 666666666666666 666666666644 36667777
Q ss_pred CCCCcccChHHHhHhhhhhcCC
Q 036236 531 HTFIKELPEELKKLLEAIQRAP 552 (557)
Q Consensus 531 ~n~l~~lP~~i~~L~~L~~L~~ 552 (557)
+|+|..||-+|.+|+.|++|-+
T Consensus 220 cNkis~iPv~fr~m~~Lq~l~L 241 (722)
T KOG0532|consen 220 CNKISYLPVDFRKMRHLQVLQL 241 (722)
T ss_pred cCceeecchhhhhhhhheeeee
Confidence 7777777777777777765433
No 111
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.27 E-value=2e-05 Score=80.09 Aligned_cols=171 Identities=20% Similarity=0.312 Sum_probs=97.6
Q ss_pred CcccchhHHHHHHHHHHhc---c---------CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCH
Q 036236 90 PTIVGLQSQLEQVWRCLVV---E---------ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRL 157 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~---~---------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 157 (557)
..+.|+++.++++.+.+.. . ...+-|.++|++|+|||++|+.+++.. ... |+.++.
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~---~~~-----~i~v~~---- 198 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NAT-----FIRVVG---- 198 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh---CCC-----EEEeeh----
Confidence 3578999999999887641 1 345679999999999999999999986 222 222221
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-cCCcEEEEEccCCCcc------------c----cccccccCCCC-
Q 036236 158 EKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSL-REKRFVLLLDDIWERV------------D----LTKVGVPLPGP- 219 (557)
Q Consensus 158 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~------------~----~~~l~~~l~~~- 219 (557)
..+.... .+ ........+.+.. ...+.+|+|||++... . +..+...+...
T Consensus 199 ~~l~~~~---~g---------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~ 266 (389)
T PRK03992 199 SELVQKF---IG---------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD 266 (389)
T ss_pred HHHhHhh---cc---------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC
Confidence 1111110 00 1122222333332 3467899999996421 0 11111111111
Q ss_pred CCCCcEEEEeeCChHHHhc--c---cCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCC
Q 036236 220 QNTTSKVVFTTRSIDVCGS--M---ESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGL 288 (557)
Q Consensus 220 ~~~~s~iliTtR~~~v~~~--~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 288 (557)
..++..||.||........ . .-...+.+++.+.++-.++|..++.........+ ...+++.+.|.
T Consensus 267 ~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~ 336 (389)
T PRK03992 267 PRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEGA 336 (389)
T ss_pred CCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCC
Confidence 1223677777775443111 1 1245689999999999999998876543222233 34566667664
No 112
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.27 E-value=3.8e-07 Score=87.76 Aligned_cols=97 Identities=27% Similarity=0.281 Sum_probs=47.9
Q ss_pred ceEEEccccccccccCC--CCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCc-cccCCCCCCeeec
Q 036236 453 VRRLSLMQNQIETLSEV--PTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPV-GMSKLGSLELLDI 529 (557)
Q Consensus 453 l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~-~i~~L~~L~~L~l 529 (557)
...|.|..|.++.+|+. ..+++||.|+|++|+ ++.|.+..|..++.|-.|-+-+|++|+.||. .|++|..|+.|.+
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~-Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN-ISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccc-hhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 34455555555555443 455555555555555 5555444455555544443333225555554 3455555555555
Q ss_pred cCCCCcccChH-HHhHhhhhhc
Q 036236 530 SHTFIKELPEE-LKKLLEAIQR 550 (557)
Q Consensus 530 ~~n~l~~lP~~-i~~L~~L~~L 550 (557)
.-|++..++.. +..|++|.-|
T Consensus 148 Nan~i~Cir~~al~dL~~l~lL 169 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLL 169 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchh
Confidence 55555544432 4455554433
No 113
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.25 E-value=4.3e-06 Score=82.80 Aligned_cols=93 Identities=17% Similarity=0.084 Sum_probs=63.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCc--cCHHHHHHHHHHHhCCCCCCCCCCCHHHHHH--
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKD--LRLEKIQEDIGKKIGLFDDSWKSKSVEEKAV-- 185 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~-- 185 (557)
+....++|+|++|+|||||++.+++... ..+|+..+|+.+.+. .++.++++.+...+-...-+.........+.
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~--~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v 243 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAIT--RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMV 243 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhc--ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHH
Confidence 5677899999999999999999999973 347999999998866 6889999998543322111101111011111
Q ss_pred --HHHHH-hcCCcEEEEEccCC
Q 036236 186 --DIFRS-LREKRFVLLLDDIW 204 (557)
Q Consensus 186 --~l~~~-l~~k~~LlVlDdv~ 204 (557)
..... -.+++++|++|++.
T Consensus 244 ~e~Ae~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 244 IEKAKRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHHHHHcCCCeEEEEEChh
Confidence 11111 35799999999984
No 114
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.25 E-value=2.9e-05 Score=80.28 Aligned_cols=189 Identities=16% Similarity=0.189 Sum_probs=103.1
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHH--
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKK-- 167 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~-- 167 (557)
..++|.+..++.|.+++..+.-...+.++|+.|+||||+|+.+++.........+.. .+........+...
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~-------~c~~c~~C~~i~~~~~ 89 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQE-------PCNQCASCKEISSGTS 89 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCC-------CCcccHHHHHHhcCCC
Confidence 468999999999999998333346788999999999999999988762110000000 00000000000000
Q ss_pred ---hCCCCCCCCCCCHHHHHHHHHHH-----hcCCcEEEEEccCCCc--cccccccccCCCCCCCCcEEEEeeCCh-HHH
Q 036236 168 ---IGLFDDSWKSKSVEEKAVDIFRS-----LREKRFVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTRSI-DVC 236 (557)
Q Consensus 168 ---l~~~~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~iliTtR~~-~v~ 236 (557)
+..... .....++.. .+.+. ..+.+-++|+|+++.. .....+...+...... ..+|++|.+. .+.
T Consensus 90 ~d~~~i~g~--~~~gid~ir-~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~-~~~Il~t~~~~kl~ 165 (451)
T PRK06305 90 LDVLEIDGA--SHRGIEDIR-QINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQH-VKFFLATTEIHKIP 165 (451)
T ss_pred CceEEeecc--ccCCHHHHH-HHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCC-ceEEEEeCChHhcc
Confidence 000000 001111111 11111 1255678999998543 2233444444433333 6666666432 222
Q ss_pred h-cccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHH
Q 036236 237 G-SMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLAL 292 (557)
Q Consensus 237 ~-~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai 292 (557)
. .......+++.++++++....+.+.+...+...+ .+.+..|++.++|.+--+
T Consensus 166 ~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~---~~al~~L~~~s~gdlr~a 219 (451)
T PRK06305 166 GTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETS---REALLPIARAAQGSLRDA 219 (451)
T ss_pred hHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 1 1223457899999999999888877644332221 356788999999977533
No 115
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.25 E-value=1.5e-05 Score=82.32 Aligned_cols=159 Identities=21% Similarity=0.206 Sum_probs=95.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcc-eEEEEEeCCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 036236 112 VGIIGLYGMGGVGKTTLLTHINNKFLENPINFD-CVIWVVVSKDLRLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRS 190 (557)
Q Consensus 112 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 190 (557)
...+.|+|++|+|||+|++.+++... ..+.+ .++|++. .++...+...+.. .... .+.+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~--~~~~~~~v~yi~~------~~f~~~~~~~~~~-------~~~~----~f~~~ 190 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVV--QNEPDLRVMYITS------EKFLNDLVDSMKE-------GKLN----EFREK 190 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH--HhCCCCeEEEEEH------HHHHHHHHHHHhc-------ccHH----HHHHH
Confidence 45699999999999999999999872 22223 4666643 3455566555431 1122 23333
Q ss_pred hcCCcEEEEEccCCCccc---c-ccccccCCCCC-CCCcEEEEeeC-ChHH--------HhcccCCCceecCCCCHHHHH
Q 036236 191 LREKRFVLLLDDIWERVD---L-TKVGVPLPGPQ-NTTSKVVFTTR-SIDV--------CGSMESHRKFPVACLSEEDAW 256 (557)
Q Consensus 191 l~~k~~LlVlDdv~~~~~---~-~~l~~~l~~~~-~~~s~iliTtR-~~~v--------~~~~~~~~~~~l~~L~~~ea~ 256 (557)
++.+.-+|++||+..... . +.+...+.... .+ ..||+||. .+.- .+.+...-.+.+++.+.++-.
T Consensus 191 ~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~-k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~ 269 (440)
T PRK14088 191 YRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSG-KQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRK 269 (440)
T ss_pred HHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcC-CeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHH
Confidence 334456899999963211 1 12222222111 23 56888774 3322 223344557889999999999
Q ss_pred HHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHH
Q 036236 257 ELFREKVGQETLESHHDIVELAQTVARECDGLPLALL 293 (557)
Q Consensus 257 ~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~ 293 (557)
+++.+.+.......+ +++...|++.+.|.--.+.
T Consensus 270 ~IL~~~~~~~~~~l~---~ev~~~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 270 KIARKMLEIEHGELP---EEVLNFVAENVDDNLRRLR 303 (440)
T ss_pred HHHHHHHHhcCCCCC---HHHHHHHHhccccCHHHHH
Confidence 999988764432222 3578888888888655443
No 116
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.25 E-value=5.9e-06 Score=77.41 Aligned_cols=181 Identities=17% Similarity=0.205 Sum_probs=109.5
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcce-EEEEEeCCccCHHHHHHHHHHHh
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDC-VIWVVVSKDLRLEKIQEDIGKKI 168 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l 168 (557)
..++|.+..++.|.+.+. .........+|++|.|||+.|..++..... ..-|.+ ++=.+.|......-+-.
T Consensus 36 de~~gQe~vV~~L~~a~~-~~~lp~~LFyGPpGTGKTStalafar~L~~-~~~~~~rvl~lnaSderGisvvr~------ 107 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALL-RRILPHYLFYGPPGTGKTSTALAFARALNC-EQLFPCRVLELNASDERGISVVRE------ 107 (346)
T ss_pred HhhcchHHHHHHHHHHHh-hcCCceEEeeCCCCCcHhHHHHHHHHHhcC-ccccccchhhhcccccccccchhh------
Confidence 568999999999999999 467789999999999999999999888722 233443 33233333222110000
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHh--cCCc-EEEEEccCCCc--cccccccccCCCCCCCCcEEEEeeCChHH-Hhc-ccC
Q 036236 169 GLFDDSWKSKSVEEKAVDIFRSL--REKR-FVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTRSIDV-CGS-MES 241 (557)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~l~~~l--~~k~-~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~iliTtR~~~v-~~~-~~~ 241 (557)
...+...+........ .-++ -++|||+++.. +.|..+...+...... ++.++.+..... ... ...
T Consensus 108 -------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~-trFiLIcnylsrii~pi~SR 179 (346)
T KOG0989|consen 108 -------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRT-TRFILICNYLSRIIRPLVSR 179 (346)
T ss_pred -------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccc-eEEEEEcCChhhCChHHHhh
Confidence 0111111111100000 0123 48899999754 4466666555554444 666555443222 111 122
Q ss_pred CCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCc
Q 036236 242 HRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLP 289 (557)
Q Consensus 242 ~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 289 (557)
...|..++|.+++...-++..+..++...++ +..+.|++.++|--
T Consensus 180 C~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~---~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 180 CQKFRFKKLKDEDIVDRLEKIASKEGVDIDD---DALKLIAKISDGDL 224 (346)
T ss_pred HHHhcCCCcchHHHHHHHHHHHHHhCCCCCH---HHHHHHHHHcCCcH
Confidence 3568999999999999888888766544433 46788999998854
No 117
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.24 E-value=4.8e-05 Score=72.45 Aligned_cols=202 Identities=15% Similarity=0.105 Sum_probs=117.0
Q ss_pred Ccccchh---HHHHHHHHHHhc--cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCC---cceEEEEEeCCccCHHHHH
Q 036236 90 PTIVGLQ---SQLEQVWRCLVV--EESVGIIGLYGMGGVGKTTLLTHINNKFLENPIN---FDCVIWVVVSKDLRLEKIQ 161 (557)
Q Consensus 90 ~~~vGr~---~~~~~l~~~L~~--~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~---f~~~~wv~~~~~~~~~~~~ 161 (557)
+..||-. +.++.|.+++.. .....-+.|+|.+|+|||++++.+...+...... --.++.|.....++...++
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y 113 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFY 113 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHH
Confidence 3456653 344555555552 2345679999999999999999999887322111 1147777888899999999
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcC-CcEEEEEccCCCc-----cccccc---cccCCCCCCCCcEEEEeeCC
Q 036236 162 EDIGKKIGLFDDSWKSKSVEEKAVDIFRSLRE-KRFVLLLDDIWER-----VDLTKV---GVPLPGPQNTTSKVVFTTRS 232 (557)
Q Consensus 162 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~-----~~~~~l---~~~l~~~~~~~s~iliTtR~ 232 (557)
..|+.+++.+... ..............++. +.=+||+|++.+. ..-..+ ...+...-.- +-|.+-|+.
T Consensus 114 ~~IL~~lgaP~~~--~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~i-piV~vGt~~ 190 (302)
T PF05621_consen 114 SAILEALGAPYRP--RDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQI-PIVGVGTRE 190 (302)
T ss_pred HHHHHHhCcccCC--CCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCC-CeEEeccHH
Confidence 9999999987643 23344444444455544 4459999999652 111111 1222111122 455666654
Q ss_pred hHHHhcc-----cCCCceecCCCCHHH-HHHHHHHHhCCC--ccCCCccHHHHHHHHHHHhCCCchHHHH
Q 036236 233 IDVCGSM-----ESHRKFPVACLSEED-AWELFREKVGQE--TLESHHDIVELAQTVARECDGLPLALLT 294 (557)
Q Consensus 233 ~~v~~~~-----~~~~~~~l~~L~~~e-a~~L~~~~~~~~--~~~~~~~~~~~~~~i~~~~~G~PLai~~ 294 (557)
-.-+-.. .-...+.|+....++ ...|+......- .....-...++++.|...++|+.--+..
T Consensus 191 A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ 260 (302)
T PF05621_consen 191 AYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSR 260 (302)
T ss_pred HHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHH
Confidence 2221111 123456666655544 444544332111 1122233467899999999998754433
No 118
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.24 E-value=1.3e-05 Score=77.11 Aligned_cols=154 Identities=16% Similarity=0.196 Sum_probs=79.7
Q ss_pred cccchhHHHHHHHHH---Hhc-----------cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccC
Q 036236 91 TIVGLQSQLEQVWRC---LVV-----------EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLR 156 (557)
Q Consensus 91 ~~vGr~~~~~~l~~~---L~~-----------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~ 156 (557)
.++|.+..+++|.+. +.. .+....+.++|++|+||||+|+.+++..... ..-....++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~-~~~~~~~~v~~~~~-- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEM-NVLSKGHLIEVERA-- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhc-CcccCCceEEecHH--
Confidence 478988777666533 310 1245678899999999999999998875211 11111112333221
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCcc----------ccccccccCCCCCCCCcEE
Q 036236 157 LEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWERV----------DLTKVGVPLPGPQNTTSKV 226 (557)
Q Consensus 157 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~~~l~~~l~~~~~~~s~i 226 (557)
++... ..+ .. ......+.+... ..+|++|+++... ....+...+...... ..+
T Consensus 84 --~l~~~---~~g--------~~-~~~~~~~~~~a~--~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~-~~v 146 (261)
T TIGR02881 84 --DLVGE---YIG--------HT-AQKTREVIKKAL--GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNE-FVL 146 (261)
T ss_pred --Hhhhh---hcc--------ch-HHHHHHHHHhcc--CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCC-EEE
Confidence 11111 000 11 111112222222 3489999996421 122233333222222 455
Q ss_pred EEeeCChHH----------HhcccCCCceecCCCCHHHHHHHHHHHhCCC
Q 036236 227 VFTTRSIDV----------CGSMESHRKFPVACLSEEDAWELFREKVGQE 266 (557)
Q Consensus 227 liTtR~~~v----------~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~ 266 (557)
++++..... .+.+ ...+++++++.++-.+++.+.+...
T Consensus 147 ila~~~~~~~~~~~~~p~L~sRf--~~~i~f~~~~~~el~~Il~~~~~~~ 194 (261)
T TIGR02881 147 ILAGYSDEMDYFLSLNPGLRSRF--PISIDFPDYTVEELMEIAERMVKER 194 (261)
T ss_pred EecCCcchhHHHHhcChHHHhcc--ceEEEECCCCHHHHHHHHHHHHHHc
Confidence 555543221 1221 2457899999999999998877543
No 119
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.22 E-value=2.8e-05 Score=75.46 Aligned_cols=155 Identities=12% Similarity=0.097 Sum_probs=80.8
Q ss_pred cccchhHHHHHHHHHHh---c---------c--CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccC
Q 036236 91 TIVGLQSQLEQVWRCLV---V---------E--ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLR 156 (557)
Q Consensus 91 ~~vGr~~~~~~l~~~L~---~---------~--~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~ 156 (557)
.++|.++.+++|.++.. . . .....+.++|++|+|||++|+.++..... .......-|+.++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~-~g~~~~~~~v~v~~--- 98 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHR-LGYVRKGHLVSVTR--- 98 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHH-cCCcccceEEEecH---
Confidence 46887777666554322 0 0 12336889999999999999888776521 11111112444442
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCc-----------cccccccccCCCCCCCCcE
Q 036236 157 LEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWER-----------VDLTKVGVPLPGPQNTTSK 225 (557)
Q Consensus 157 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~l~~~l~~~~~~~s~ 225 (557)
.++ ...+.. .+..... .+.+.. ..-+|+||++... .....+...+...... .+
T Consensus 99 -~~l----~~~~~g-------~~~~~~~-~~~~~a--~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~-~~ 162 (284)
T TIGR02880 99 -DDL----VGQYIG-------HTAPKTK-EILKRA--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDD-LV 162 (284)
T ss_pred -HHH----hHhhcc-------cchHHHH-HHHHHc--cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCC-EE
Confidence 122 111111 0111111 222222 2368999999522 1112233333332223 66
Q ss_pred EEEeeCChHHHhcc--------cCCCceecCCCCHHHHHHHHHHHhCC
Q 036236 226 VVFTTRSIDVCGSM--------ESHRKFPVACLSEEDAWELFREKVGQ 265 (557)
Q Consensus 226 iliTtR~~~v~~~~--------~~~~~~~l~~L~~~ea~~L~~~~~~~ 265 (557)
||+++.....-... .....+++++++.+|-.+++...+..
T Consensus 163 vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~ 210 (284)
T TIGR02880 163 VILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKE 210 (284)
T ss_pred EEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHH
Confidence 76666543221111 01356899999999999998887654
No 120
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.22 E-value=1.3e-07 Score=95.05 Aligned_cols=107 Identities=27% Similarity=0.365 Sum_probs=76.6
Q ss_pred cccccccceEEEccccccccccCCCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCccccCCCCCC
Q 036236 446 AVKGWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVGMSKLGSLE 525 (557)
Q Consensus 446 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~i~~L~~L~ 525 (557)
.+.++..+..|+++.|.+..+|...-.--|++|.+++|+ ++.+|.. ++.+..|..||.+.| .+..+|..++.|.+|+
T Consensus 116 ~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNk-l~~lp~~-ig~~~tl~~ld~s~n-ei~slpsql~~l~slr 192 (722)
T KOG0532|consen 116 AICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNK-LTSLPEE-IGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLR 192 (722)
T ss_pred hhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCc-cccCCcc-cccchhHHHhhhhhh-hhhhchHHhhhHHHHH
Confidence 345556677777777777777665444557777777776 7777777 667777777777777 7777777777777777
Q ss_pred eeeccCCCCcccChHHHhHhhhhhcCCCCCC
Q 036236 526 LLDISHTFIKELPEELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 526 ~L~l~~n~l~~lP~~i~~L~~L~~L~~~~~~ 556 (557)
.|+++.|++..+|++++.| .|..||.+.|+
T Consensus 193 ~l~vrRn~l~~lp~El~~L-pLi~lDfScNk 222 (722)
T KOG0532|consen 193 DLNVRRNHLEDLPEELCSL-PLIRLDFSCNK 222 (722)
T ss_pred HHHHhhhhhhhCCHHHhCC-ceeeeecccCc
Confidence 7777777777777777744 56677766554
No 121
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.21 E-value=0.0001 Score=73.19 Aligned_cols=176 Identities=12% Similarity=0.156 Sum_probs=108.3
Q ss_pred CCcccchhHHHHHHHHHHhc---cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHH
Q 036236 89 EPTIVGLQSQLEQVWRCLVV---EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIG 165 (557)
Q Consensus 89 ~~~~vGr~~~~~~l~~~L~~---~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 165 (557)
+..++||+.+++.+.+++.. ....+.+-|.|.+|.|||.+...++.+....... -.++.+.+..-.....++..|.
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~-~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKS-PVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhccc-ceeEEEeeccccchHHHHHHHH
Confidence 35689999999999999873 3577889999999999999999999987321112 2456777666556667777777
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHhcC--CcEEEEEccCCCcc--ccccccccCCCCCCCCcEEEEeeCChH------H
Q 036236 166 KKIGLFDDSWKSKSVEEKAVDIFRSLRE--KRFVLLLDDIWERV--DLTKVGVPLPGPQNTTSKVVFTTRSID------V 235 (557)
Q Consensus 166 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~--~~~~l~~~l~~~~~~~s~iliTtR~~~------v 235 (557)
..+--... ......+....+.+...+ +.+|+|+|.++... .-..+...|.+..-.++++|+.---.. .
T Consensus 228 ~~~~q~~~--s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~ 305 (529)
T KOG2227|consen 228 SSLLQDLV--SPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRF 305 (529)
T ss_pred HHHHHHhc--CCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHH
Confidence 76611100 111224445555555544 36899999986431 111222222222222255554322111 1
Q ss_pred Hhc-----ccCCCceecCCCCHHHHHHHHHHHhCCCc
Q 036236 236 CGS-----MESHRKFPVACLSEEDAWELFREKVGQET 267 (557)
Q Consensus 236 ~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~ 267 (557)
+.. ......+..+|.+.++-.++|..++....
T Consensus 306 LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~ 342 (529)
T KOG2227|consen 306 LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEES 342 (529)
T ss_pred hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhccc
Confidence 111 12345678899999999999999876543
No 122
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.21 E-value=4.2e-05 Score=80.97 Aligned_cols=194 Identities=13% Similarity=0.096 Sum_probs=108.2
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhC
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIG 169 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 169 (557)
..++|.+..++.|..++..+.-.+.+.++|+.|+||||+|+.+++...- ...... ..++.. ...+.+...-.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c-~~~~~~---~pC~~C----~~C~~i~~~~~ 87 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNC-VNGPTP---MPCGEC----SSCKSIDNDNS 87 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcc-ccCCCC---CCCccc----hHHHHHHcCCC
Confidence 4689999999999999984444567889999999999999999888621 111100 001110 11111111100
Q ss_pred CCC---CCCCCCCHHHHHHHH---HH-HhcCCcEEEEEccCCCc--cccccccccCCCCCCCCcEEEEeeCC-hHHHh-c
Q 036236 170 LFD---DSWKSKSVEEKAVDI---FR-SLREKRFVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTRS-IDVCG-S 238 (557)
Q Consensus 170 ~~~---~~~~~~~~~~~~~~l---~~-~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~iliTtR~-~~v~~-~ 238 (557)
... +.......++..... .. -..+++-++|+|++... ..+..+...+...... +.+|++|.. ..+.. .
T Consensus 88 ~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~-~vfI~~tte~~kL~~tI 166 (563)
T PRK06647 88 LDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPY-IVFIFATTEVHKLPATI 166 (563)
T ss_pred CCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCC-EEEEEecCChHHhHHHH
Confidence 000 000112222222111 11 12355668999998643 2344555555443333 666655543 33322 1
Q ss_pred ccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHH
Q 036236 239 MESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTI 295 (557)
Q Consensus 239 ~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 295 (557)
......+++.+++.++..+.+.+.+.......+ .+.+..|++.++|.+-.+..+
T Consensus 167 ~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id---~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 167 KSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYE---DEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred HHhceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 223456899999999999888887644332222 356778999999988544333
No 123
>PRK06620 hypothetical protein; Validated
Probab=98.19 E-value=1.5e-05 Score=73.92 Aligned_cols=134 Identities=12% Similarity=0.029 Sum_probs=78.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc
Q 036236 113 GIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSLR 192 (557)
Q Consensus 113 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 192 (557)
+.+.|+|++|+|||+|++.+++.. .. .++. .... . . +..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~---~~-----~~~~--~~~~----------------------~-~-------~~~- 83 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS---NA-----YIIK--DIFF----------------------N-E-------EIL- 83 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc---CC-----EEcc--hhhh----------------------c-h-------hHH-
Confidence 679999999999999999987765 11 1111 0000 0 0 011
Q ss_pred CCcEEEEEccCCCccccccccccCCCC-CCCCcEEEEeeCChH-------HHhcccCCCceecCCCCHHHHHHHHHHHhC
Q 036236 193 EKRFVLLLDDIWERVDLTKVGVPLPGP-QNTTSKVVFTTRSID-------VCGSMESHRKFPVACLSEEDAWELFREKVG 264 (557)
Q Consensus 193 ~k~~LlVlDdv~~~~~~~~l~~~l~~~-~~~~s~iliTtR~~~-------v~~~~~~~~~~~l~~L~~~ea~~L~~~~~~ 264 (557)
+..-+|++||+....+ ..+...+... ..| ..||+|++... +.+.+...-.+++++++.++-..++.+.+.
T Consensus 84 ~~~d~lliDdi~~~~~-~~lf~l~N~~~e~g-~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~ 161 (214)
T PRK06620 84 EKYNAFIIEDIENWQE-PALLHIFNIINEKQ-KYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFS 161 (214)
T ss_pred hcCCEEEEeccccchH-HHHHHHHHHHHhcC-CEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHH
Confidence 1234788999963221 1121111111 233 67888887432 233444556799999999998888887765
Q ss_pred CCccCCCccHHHHHHHHHHHhCCCchHH
Q 036236 265 QETLESHHDIVELAQTVARECDGLPLAL 292 (557)
Q Consensus 265 ~~~~~~~~~~~~~~~~i~~~~~G~PLai 292 (557)
......+ +++..-|++++.|.--.+
T Consensus 162 ~~~l~l~---~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 162 ISSVTIS---RQIIDFLLVNLPREYSKI 186 (214)
T ss_pred HcCCCCC---HHHHHHHHHHccCCHHHH
Confidence 3322222 356777887777655443
No 124
>CHL00181 cbbX CbbX; Provisional
Probab=98.19 E-value=3.9e-05 Score=74.43 Aligned_cols=156 Identities=12% Similarity=0.159 Sum_probs=81.3
Q ss_pred cccchhHHHHHHHHHH---hc-----------cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccC
Q 036236 91 TIVGLQSQLEQVWRCL---VV-----------EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLR 156 (557)
Q Consensus 91 ~~vGr~~~~~~l~~~L---~~-----------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~ 156 (557)
.++|.+..+++|.++. .- ......+.++|++|+|||++|+.+++.... ...-...-|+.++.
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~-~g~~~~~~~~~v~~--- 99 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYK-LGYIKKGHLLTVTR--- 99 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHH-cCCCCCCceEEecH---
Confidence 4678776666554432 10 012345889999999999999999886521 11111112444442
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCc-----------cccccccccCCCCCCCCcE
Q 036236 157 LEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWER-----------VDLTKVGVPLPGPQNTTSK 225 (557)
Q Consensus 157 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~l~~~l~~~~~~~s~ 225 (557)
..+.... .+. ..... ..+.+.. ..-+|+||++... .....+...+...... .+
T Consensus 100 -~~l~~~~---~g~--------~~~~~-~~~l~~a--~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~-~~ 163 (287)
T CHL00181 100 -DDLVGQY---IGH--------TAPKT-KEVLKKA--MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDD-LV 163 (287)
T ss_pred -HHHHHHH---hcc--------chHHH-HHHHHHc--cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCC-EE
Confidence 1222211 110 11111 1222222 2349999999642 1112222333332233 66
Q ss_pred EEEeeCChHHHhcc--------cCCCceecCCCCHHHHHHHHHHHhCCC
Q 036236 226 VVFTTRSIDVCGSM--------ESHRKFPVACLSEEDAWELFREKVGQE 266 (557)
Q Consensus 226 iliTtR~~~v~~~~--------~~~~~~~l~~L~~~ea~~L~~~~~~~~ 266 (557)
||+++......... .....+.+++++.+|..+++...+...
T Consensus 164 vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~ 212 (287)
T CHL00181 164 VIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQ 212 (287)
T ss_pred EEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHh
Confidence 77776543321110 123468999999999999988877543
No 125
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.19 E-value=5.7e-05 Score=80.24 Aligned_cols=190 Identities=16% Similarity=0.112 Sum_probs=106.2
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhC
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIG 169 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 169 (557)
..++|.+..++.+.+++..+.-.+.+.++|+.|+||||+|+.+++... -....+ ..+++.......|.....
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~-c~~~~~-------~~pC~~C~~C~~i~~g~~ 87 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVN-CLNPPD-------GEPCNECEICKAITNGSL 87 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CCCCCC-------CCCCCccHHHHHHhcCCC
Confidence 568999999999999998444556778899999999999999988762 111000 011111122222221111
Q ss_pred CCCCCC---CCCCHHHHHHHHHHH-----hcCCcEEEEEccCCCc--cccccccccCCCCCCCCcEEEEeeCCh-HHHh-
Q 036236 170 LFDDSW---KSKSVEEKAVDIFRS-----LREKRFVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTRSI-DVCG- 237 (557)
Q Consensus 170 ~~~~~~---~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~iliTtR~~-~v~~- 237 (557)
.+.... .....++ ...+.+. ..++.-++|+|+++.. ..+..+...+...... ..+|++|... .+..
T Consensus 88 ~dv~eidaas~~~vd~-ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~-~ifIlatt~~~ki~~t 165 (559)
T PRK05563 88 MDVIEIDAASNNGVDE-IRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAH-VIFILATTEPHKIPAT 165 (559)
T ss_pred CCeEEeeccccCCHHH-HHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCC-eEEEEEeCChhhCcHH
Confidence 100000 0111221 1122222 2345668899999643 2344444444333233 5555544433 2221
Q ss_pred cccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHH
Q 036236 238 SMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLAL 292 (557)
Q Consensus 238 ~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai 292 (557)
.......+.+.+++.++....+...+...+...+ .+.+..|++.++|.+..+
T Consensus 166 I~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~---~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 166 ILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE---DEALRLIARAAEGGMRDA 217 (559)
T ss_pred HHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 1223456889999999999988887654432222 256778889999887644
No 126
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=4.6e-05 Score=81.61 Aligned_cols=196 Identities=15% Similarity=0.121 Sum_probs=110.2
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhC
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIG 169 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 169 (557)
..++|.+..+..|..++..+.-...+.++|+.|+||||+|+.+++... ....+... ...+......+.+.....
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~--c~~~~~~~----~~~Cg~C~~C~~i~~g~h 89 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLN--CLNSDKPT----PEPCGKCELCRAIAAGNA 89 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhc--CCCcCCCC----CCCCcccHHHHHHhcCCC
Confidence 467999999999999998333346788999999999999999998872 11111000 011222233333332221
Q ss_pred CCC---CCCCCCCHHHHHHHHHHHh-----cCCcEEEEEccCCCc--cccccccccCCCCCCCCcEEEEeeCCh-HHHh-
Q 036236 170 LFD---DSWKSKSVEEKAVDIFRSL-----REKRFVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTRSI-DVCG- 237 (557)
Q Consensus 170 ~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~iliTtR~~-~v~~- 237 (557)
... +.......++... +.+.+ .+++-++|+|+++.. .....++..+...... +.+|++|.+. .+..
T Consensus 90 ~D~~ei~~~~~~~vd~IRe-ii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~-tvfIL~t~~~~~llpT 167 (620)
T PRK14948 90 LDVIEIDAASNTGVDNIRE-LIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPR-VVFVLATTDPQRVLPT 167 (620)
T ss_pred ccEEEEeccccCCHHHHHH-HHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcC-eEEEEEeCChhhhhHH
Confidence 110 0001112222222 22221 245568999999643 2344555555443333 5555555443 2221
Q ss_pred cccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHHH
Q 036236 238 SMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTIG 296 (557)
Q Consensus 238 ~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~ 296 (557)
.......+++.+++.++....+...+........ .+.+..|++.++|.+..+..+.
T Consensus 168 IrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is---~~al~~La~~s~G~lr~A~~lL 223 (620)
T PRK14948 168 IISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE---PEALTLVAQRSQGGLRDAESLL 223 (620)
T ss_pred HHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 1223456888899999988888776654332221 2467889999999886554433
No 127
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.18 E-value=0.00017 Score=67.07 Aligned_cols=171 Identities=22% Similarity=0.214 Sum_probs=98.4
Q ss_pred CcccchhHHHHHHHHHHhc----cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHH
Q 036236 90 PTIVGLQSQLEQVWRCLVV----EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIG 165 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~----~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 165 (557)
..|||.++.++++.=.+.. +...-.|.++|++|.||||||.-+++.. .+ .+. ++.+....-..=+..|+
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em-gv--n~k----~tsGp~leK~gDlaaiL 98 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL-GV--NLK----ITSGPALEKPGDLAAIL 98 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh-cC--CeE----ecccccccChhhHHHHH
Confidence 4699999988888766653 4567889999999999999999999998 22 221 11111000001111111
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCc------------------------cccccccccCCCCCC
Q 036236 166 KKIGLFDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWER------------------------VDLTKVGVPLPGPQN 221 (557)
Q Consensus 166 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~------------------------~~~~~l~~~l~~~~~ 221 (557)
..+ +.. =+|.+|.+... .....+...++..
T Consensus 99 t~L-----------------------e~~-DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppF-- 152 (332)
T COG2255 99 TNL-----------------------EEG-DVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPF-- 152 (332)
T ss_pred hcC-----------------------CcC-CeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCe--
Confidence 111 111 23444554321 1111122222221
Q ss_pred CCcEEEEeeCChHHHhccc--CCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHHHHH
Q 036236 222 TTSKVVFTTRSIDVCGSME--SHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTIGRA 298 (557)
Q Consensus 222 ~~s~iliTtR~~~v~~~~~--~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~ 298 (557)
+-|=.|||...+...+. -....+++-.+.+|-.++..+.+..-..... ++.+.+|+++..|-|--..-+-+.
T Consensus 153 --TLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~---~~~a~eIA~rSRGTPRIAnRLLrR 226 (332)
T COG2255 153 --TLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEID---EEAALEIARRSRGTPRIANRLLRR 226 (332)
T ss_pred --eEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCC---hHHHHHHHHhccCCcHHHHHHHHH
Confidence 23446888654432221 1235688889999999999988765443332 357889999999999755444433
No 128
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.18 E-value=3.9e-05 Score=78.89 Aligned_cols=159 Identities=23% Similarity=0.218 Sum_probs=92.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 036236 112 VGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSL 191 (557)
Q Consensus 112 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 191 (557)
...+.|+|++|+|||+|++.+++.... ...-..+++++. .++...+...+... ... .+.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~-~~~~~~v~yi~~------~~~~~~~~~~~~~~-------~~~----~~~~~~ 197 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILE-NNPNAKVVYVSS------EKFTNDFVNALRNN-------KME----EFKEKY 197 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHH-hCCCCcEEEEEH------HHHHHHHHHHHHcC-------CHH----HHHHHH
Confidence 357899999999999999999998721 111124556543 33444555444311 122 223333
Q ss_pred cCCcEEEEEccCCCccc----cccccccCCCC-CCCCcEEEEeeCCh-H--------HHhcccCCCceecCCCCHHHHHH
Q 036236 192 REKRFVLLLDDIWERVD----LTKVGVPLPGP-QNTTSKVVFTTRSI-D--------VCGSMESHRKFPVACLSEEDAWE 257 (557)
Q Consensus 192 ~~k~~LlVlDdv~~~~~----~~~l~~~l~~~-~~~~s~iliTtR~~-~--------v~~~~~~~~~~~l~~L~~~ea~~ 257 (557)
++ .-+|||||++.... .+.+...+... ..+ ..+|+|+... . +.+.+.....+.+++.+.++-..
T Consensus 198 ~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~-~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~ 275 (405)
T TIGR00362 198 RS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENG-KQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLA 275 (405)
T ss_pred Hh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCC-CCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHH
Confidence 32 34899999964221 11222222111 123 4577777642 2 12233334568999999999999
Q ss_pred HHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHH
Q 036236 258 LFREKVGQETLESHHDIVELAQTVARECDGLPLALL 293 (557)
Q Consensus 258 L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~ 293 (557)
++.+.+.......+ +++...|++.+.|..-.+.
T Consensus 276 il~~~~~~~~~~l~---~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 276 ILQKKAEEEGLELP---DEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHH
Confidence 99998765442222 3677888888888766543
No 129
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.16 E-value=1.5e-05 Score=76.87 Aligned_cols=168 Identities=18% Similarity=0.231 Sum_probs=105.3
Q ss_pred CCcccchhHHHHHHHHHHhccCC--eeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHH
Q 036236 89 EPTIVGLQSQLEQVWRCLVVEES--VGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGK 166 (557)
Q Consensus 89 ~~~~vGr~~~~~~l~~~L~~~~~--~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 166 (557)
.+.|.+|+.++..+..++..++. +..|.|+|.+|.|||.+.+++.+.. .. ..+|+++-..+....++..|+.
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~---n~---~~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL---NL---ENVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc---CC---cceeeehHHhccHHHHHHHHHH
Confidence 46789999999999999984332 3556899999999999999999986 22 3589999999999999999999
Q ss_pred HhCCCCCC-CCCC----CHHHHHHHHHH--Hh--cCCcEEEEEccCCCcccccccccc----CCCCCCCCcEEEEeeCC-
Q 036236 167 KIGLFDDS-WKSK----SVEEKAVDIFR--SL--REKRFVLLLDDIWERVDLTKVGVP----LPGPQNTTSKVVFTTRS- 232 (557)
Q Consensus 167 ~l~~~~~~-~~~~----~~~~~~~~l~~--~l--~~k~~LlVlDdv~~~~~~~~l~~~----l~~~~~~~s~iliTtR~- 232 (557)
+++....+ .... ........+.+ .. +++.++||||+++.-.+.+.+..+ +....+...-+|+++-.
T Consensus 79 ~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~ 158 (438)
T KOG2543|consen 79 KSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPS 158 (438)
T ss_pred HhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccc
Confidence 98632221 1111 11122223333 12 246899999999765444332111 11111111223333332
Q ss_pred h--HHHhcccC--CCceecCCCCHHHHHHHHHHH
Q 036236 233 I--DVCGSMES--HRKFPVACLSEEDAWELFREK 262 (557)
Q Consensus 233 ~--~v~~~~~~--~~~~~l~~L~~~ea~~L~~~~ 262 (557)
. .....++. ..++..+.-+.+|...++.+.
T Consensus 159 ~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 159 CEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred cHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 1 11222333 335677889999999888654
No 130
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=3.6e-05 Score=82.17 Aligned_cols=193 Identities=15% Similarity=0.154 Sum_probs=105.6
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhC
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIG 169 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 169 (557)
..++|.+..++.|.+++..+.-.+.+.++|+.|+||||+|+.+++...- ....+ ...++.......|...-.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c-~~~~~-------~~~c~~c~~c~~i~~g~~ 87 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNC-EQGLT-------AEPCNVCPPCVEITEGRS 87 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcC-CCCCC-------CCCCCccHHHHHHhcCCC
Confidence 4689999999999999983334466789999999999999999888621 11110 000111111111111000
Q ss_pred CCC---CCCCCCCHHHHHHHHHHHh-----cCCcEEEEEccCCCc--cccccccccCCCCCCCCcEEEEee-CChHHHh-
Q 036236 170 LFD---DSWKSKSVEEKAVDIFRSL-----REKRFVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTT-RSIDVCG- 237 (557)
Q Consensus 170 ~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~iliTt-R~~~v~~- 237 (557)
... +.......++. ..+.+.+ .+++-++|+|+++.. .....+...+...... +.+|++| ....+..
T Consensus 88 ~d~~eid~~s~~~v~~i-r~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~-~~fIl~t~~~~kl~~t 165 (576)
T PRK14965 88 VDVFEIDGASNTGVDDI-RELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPH-VKFIFATTEPHKVPIT 165 (576)
T ss_pred CCeeeeeccCccCHHHH-HHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCC-eEEEEEeCChhhhhHH
Confidence 000 00001111121 1222221 234558999999643 2344444444433333 5566544 4333432
Q ss_pred cccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCc-hHHHHH
Q 036236 238 SMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLP-LALLTI 295 (557)
Q Consensus 238 ~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-Lai~~~ 295 (557)
.......+++.+++.++....+...+...+...+ .+....|++.++|.. .++..+
T Consensus 166 I~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~---~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 166 ILSRCQRFDFRRIPLQKIVDRLRYIADQEGISIS---DAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 2233457889999999998888876654432222 256778899999876 444444
No 131
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.12 E-value=4.2e-05 Score=79.69 Aligned_cols=159 Identities=20% Similarity=0.199 Sum_probs=93.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 036236 112 VGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSL 191 (557)
Q Consensus 112 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 191 (557)
...+.|+|++|+|||+|++.+++.... ...--.+++++.. .+...+...+.. ... ..+.+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~-~~~~~~v~yi~~~------~~~~~~~~~~~~-------~~~----~~~~~~~ 209 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILE-KNPNAKVVYVTSE------KFTNDFVNALRN-------NTM----EEFKEKY 209 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH-hCCCCeEEEEEHH------HHHHHHHHHHHc-------CcH----HHHHHHH
Confidence 356899999999999999999998721 1112235555432 333444444421 111 2233333
Q ss_pred cCCcEEEEEccCCCccc----cccccccCCCC-CCCCcEEEEeeCChH---------HHhcccCCCceecCCCCHHHHHH
Q 036236 192 REKRFVLLLDDIWERVD----LTKVGVPLPGP-QNTTSKVVFTTRSID---------VCGSMESHRKFPVACLSEEDAWE 257 (557)
Q Consensus 192 ~~k~~LlVlDdv~~~~~----~~~l~~~l~~~-~~~~s~iliTtR~~~---------v~~~~~~~~~~~l~~L~~~ea~~ 257 (557)
+ +.-+|||||++.... .+.+...+... ..+ ..||+|+.... +.+.+.....+++++.+.++-.+
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~-~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~ 287 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAG-KQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIA 287 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCC-CcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHH
Confidence 3 344899999953211 12222222111 123 45777776432 23334445678999999999999
Q ss_pred HHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHH
Q 036236 258 LFREKVGQETLESHHDIVELAQTVARECDGLPLALL 293 (557)
Q Consensus 258 L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~ 293 (557)
++.+.+.......+ +++...|++.++|..-.+.
T Consensus 288 il~~~~~~~~~~l~---~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 288 ILKKKAEEEGIDLP---DEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHHHHHHHcCCCCC---HHHHHHHHcCcCCCHHHHH
Confidence 99998764332222 3578889999988876543
No 132
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.11 E-value=2.2e-05 Score=86.61 Aligned_cols=155 Identities=18% Similarity=0.240 Sum_probs=89.9
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCC--C-cceEEEEEeCCccCHHHHHHHHHH
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPI--N-FDCVIWVVVSKDLRLEKIQEDIGK 166 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~--~-f~~~~wv~~~~~~~~~~~~~~i~~ 166 (557)
..++||+.++++++..|. .....-+.++|++|+|||++|+.+++....... . .+..+|. ++ ...+ ..
T Consensus 182 ~~~igr~~ei~~~~~~L~-~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~~----~~~l----~a 251 (731)
T TIGR02639 182 DPLIGREDELERTIQVLC-RRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-LD----MGSL----LA 251 (731)
T ss_pred CcccCcHHHHHHHHHHHh-cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-ec----HHHH----hh
Confidence 468999999999999887 444556789999999999999999988622111 1 1333432 11 1111 11
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHHhc-CCcEEEEEccCCCcc----------cccc-ccccCCCCCCCCcEEEEeeCChH
Q 036236 167 KIGLFDDSWKSKSVEEKAVDIFRSLR-EKRFVLLLDDIWERV----------DLTK-VGVPLPGPQNTTSKVVFTTRSID 234 (557)
Q Consensus 167 ~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~----------~~~~-l~~~l~~~~~~~s~iliTtR~~~ 234 (557)
... ...+.++....+.+.++ .++.+|++|++..-. +... +...+ ..|.-++|-+|...+
T Consensus 252 ~~~------~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l---~~g~i~~IgaTt~~e 322 (731)
T TIGR02639 252 GTK------YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL---SSGKLRCIGSTTYEE 322 (731)
T ss_pred hcc------ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHH---hCCCeEEEEecCHHH
Confidence 000 11223344444444443 467899999985221 1112 22222 233355665555422
Q ss_pred HHh-------cccCCCceecCCCCHHHHHHHHHHHh
Q 036236 235 VCG-------SMESHRKFPVACLSEEDAWELFREKV 263 (557)
Q Consensus 235 v~~-------~~~~~~~~~l~~L~~~ea~~L~~~~~ 263 (557)
... ...-...+.+++++.++..+++....
T Consensus 323 ~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 323 YKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 211 11123578999999999999998654
No 133
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.10 E-value=2.5e-06 Score=87.77 Aligned_cols=104 Identities=27% Similarity=0.328 Sum_probs=74.8
Q ss_pred ccccceEEEccccccccccCCCCCC--CccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCccccCCCCCCe
Q 036236 449 GWENVRRLSLMQNQIETLSEVPTCP--HLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVGMSKLGSLEL 526 (557)
Q Consensus 449 ~~~~l~~l~l~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~i~~L~~L~~ 526 (557)
..+.+..|++.+|.+..++...... +|+.|++++|. +..+|.. ++.++.|+.|++++| .+..+|...+.+.+|+.
T Consensus 114 ~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~-~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSP-LRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNN 190 (394)
T ss_pred cccceeEEecCCcccccCccccccchhhcccccccccc-hhhhhhh-hhccccccccccCCc-hhhhhhhhhhhhhhhhh
Confidence 3356777777777777776654443 77777777777 6677644 677777777777777 77777777777777777
Q ss_pred eeccCCCCcccChHHHhHhhhhhcCCCCC
Q 036236 527 LDISHTFIKELPEELKKLLEAIQRAPRPD 555 (557)
Q Consensus 527 L~l~~n~l~~lP~~i~~L~~L~~L~~~~~ 555 (557)
|++++|++..+|..+..+..|..|.++.+
T Consensus 191 L~ls~N~i~~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 191 LDLSGNKISDLPPEIELLSALEELDLSNN 219 (394)
T ss_pred eeccCCccccCchhhhhhhhhhhhhhcCC
Confidence 77777777777777766767777776655
No 134
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.10 E-value=5.2e-07 Score=74.11 Aligned_cols=101 Identities=16% Similarity=0.236 Sum_probs=85.6
Q ss_pred ceEEEccccccccccC----CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCccccCCCCCCeee
Q 036236 453 VRRLSLMQNQIETLSE----VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVGMSKLGSLELLD 528 (557)
Q Consensus 453 l~~l~l~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~i~~L~~L~~L~ 528 (557)
+..++++++.+..++. ......|...+|++|. ++++|..|-.+++-+..|+|++| .+..+|..+..++.|+.|+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccch-hhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcc
Confidence 4455666665544332 2566788899999998 99999997778889999999999 9999999999999999999
Q ss_pred ccCCCCcccChHHHhHhhhhhcCCCCC
Q 036236 529 ISHTFIKELPEELKKLLEAIQRAPRPD 555 (557)
Q Consensus 529 l~~n~l~~lP~~i~~L~~L~~L~~~~~ 555 (557)
++.|.+...|.-|..|.+|-.|+..++
T Consensus 107 l~~N~l~~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 107 LRFNPLNAEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred cccCccccchHHHHHHHhHHHhcCCCC
Confidence 999999999999999999999988765
No 135
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.09 E-value=2.1e-05 Score=78.18 Aligned_cols=146 Identities=14% Similarity=0.135 Sum_probs=82.3
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhC
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIG 169 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 169 (557)
..++|.+...+.+..++..+....++.++|++|+|||++|+.+++.. ... ...+..+. .....+...+.....
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~---~~~---~~~i~~~~-~~~~~i~~~l~~~~~ 93 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV---GAE---VLFVNGSD-CRIDFVRNRLTRFAS 93 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---Ccc---ceEeccCc-ccHHHHHHHHHHHHH
Confidence 46899999999999999843345677779999999999999998875 111 22333333 111111111111100
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCc--ccc-ccccccCCCCCCCCcEEEEeeCChHHH-h-cccCCCc
Q 036236 170 LFDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWER--VDL-TKVGVPLPGPQNTTSKVVFTTRSIDVC-G-SMESHRK 244 (557)
Q Consensus 170 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~-~~l~~~l~~~~~~~s~iliTtR~~~v~-~-~~~~~~~ 244 (557)
. ..+.+.+-++|+||++.. .+. ..+...+.....+ +++|+||...... . .......
T Consensus 94 ~------------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~-~~~Ilt~n~~~~l~~~l~sR~~~ 154 (316)
T PHA02544 94 T------------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKN-CSFIITANNKNGIIEPLRSRCRV 154 (316)
T ss_pred h------------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCC-ceEEEEcCChhhchHHHHhhceE
Confidence 0 001234568999999643 111 2222223222233 7888888654311 1 1122345
Q ss_pred eecCCCCHHHHHHHHHH
Q 036236 245 FPVACLSEEDAWELFRE 261 (557)
Q Consensus 245 ~~l~~L~~~ea~~L~~~ 261 (557)
+.++..+.++..+++..
T Consensus 155 i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 155 IDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEeCCCCHHHHHHHHHH
Confidence 67777778877766554
No 136
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.09 E-value=0.00011 Score=67.84 Aligned_cols=48 Identities=21% Similarity=0.361 Sum_probs=40.1
Q ss_pred CCcccchhHHHHHHHHHHhc---cCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 89 EPTIVGLQSQLEQVWRCLVV---EESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 89 ~~~~vGr~~~~~~l~~~L~~---~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
-..++|.+.+++.|++-... .....-|.++|..|+|||++++.+.+.+
T Consensus 26 l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y 76 (249)
T PF05673_consen 26 LDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEY 76 (249)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHH
Confidence 35789999999998875442 4466778899999999999999999987
No 137
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.07 E-value=3.1e-05 Score=79.78 Aligned_cols=153 Identities=15% Similarity=0.113 Sum_probs=88.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 036236 112 VGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSL 191 (557)
Q Consensus 112 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 191 (557)
...+.|+|+.|+|||+|++.+++.... ....+++++ ...+...+...+... . ...+++.+
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~---~~~~v~yi~------~~~f~~~~~~~l~~~-------~----~~~f~~~~ 200 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRE---SGGKILYVR------SELFTEHLVSAIRSG-------E----MQRFRQFY 200 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHH---cCCCEEEee------HHHHHHHHHHHHhcc-------h----HHHHHHHc
Confidence 356899999999999999999998721 122345553 234444555444311 1 12233333
Q ss_pred cCCcEEEEEccCCCccc----cccccccCCCC-CCCCcEEEEeeCC-hH--------HHhcccCCCceecCCCCHHHHHH
Q 036236 192 REKRFVLLLDDIWERVD----LTKVGVPLPGP-QNTTSKVVFTTRS-ID--------VCGSMESHRKFPVACLSEEDAWE 257 (557)
Q Consensus 192 ~~k~~LlVlDdv~~~~~----~~~l~~~l~~~-~~~~s~iliTtR~-~~--------v~~~~~~~~~~~l~~L~~~ea~~ 257 (557)
+ +.-+|++||+..... .+.+...+... ..+ ..||+||.. +. +.+.+.....+.+.+++.++-..
T Consensus 201 ~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~-k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~ 278 (445)
T PRK12422 201 R-NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEG-KLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRS 278 (445)
T ss_pred c-cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCC-CcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHH
Confidence 3 345888999853211 12222222111 123 567777754 22 23334445678999999999999
Q ss_pred HHHHHhCCCccCCCccHHHHHHHHHHHhCCCc
Q 036236 258 LFREKVGQETLESHHDIVELAQTVARECDGLP 289 (557)
Q Consensus 258 L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 289 (557)
++.+++.......+ .++..-|++.+.|.-
T Consensus 279 iL~~k~~~~~~~l~---~evl~~la~~~~~di 307 (445)
T PRK12422 279 FLERKAEALSIRIE---ETALDFLIEALSSNV 307 (445)
T ss_pred HHHHHHHHcCCCCC---HHHHHHHHHhcCCCH
Confidence 99988765442222 245666777766543
No 138
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.07 E-value=0.00019 Score=70.54 Aligned_cols=197 Identities=16% Similarity=0.147 Sum_probs=109.1
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCC------------CCcceEEEEEeCCccCH
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENP------------INFDCVIWVVVSKDLRL 157 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~------------~~f~~~~wv~~~~~~~~ 157 (557)
..++|.+..++.+.+.+..+.-.+...++|+.|+||+++|..+++...-.. ....-..|+.-.....-
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g 83 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQG 83 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccc
Confidence 357999999999999998333458999999999999999999877752111 11112234321100000
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-----cCCcEEEEEccCCCcc--ccccccccCCCCCCCCcEEEEee
Q 036236 158 EKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSL-----REKRFVLLLDDIWERV--DLTKVGVPLPGPQNTTSKVVFTT 230 (557)
Q Consensus 158 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~~~s~iliTt 230 (557)
..+-..-+...+...........++ +..+.+.+ .+++-++|+|+++... ....++..+.... . +.+|++|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~I~id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~-~~fILi~ 160 (314)
T PRK07399 84 KLITASEAEEAGLKRKAPPQIRLEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-N-GTLILIA 160 (314)
T ss_pred cccchhhhhhccccccccccCcHHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-C-CeEEEEE
Confidence 0000011111111000001112222 23343333 3456689999986432 3344544444333 3 4566555
Q ss_pred CChH-HH-hcccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHH
Q 036236 231 RSID-VC-GSMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTI 295 (557)
Q Consensus 231 R~~~-v~-~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 295 (557)
.+.. +. ...+....+++.+++.++..+.+.+...... . ......++..++|.|..+..+
T Consensus 161 ~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~----~--~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 161 PSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI----L--NINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred CChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc----c--hhHHHHHHHHcCCCHHHHHHH
Confidence 5443 22 2223456789999999999999988643211 0 111357889999999765443
No 139
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.06 E-value=0.00011 Score=77.38 Aligned_cols=158 Identities=22% Similarity=0.155 Sum_probs=93.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc
Q 036236 113 GIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSLR 192 (557)
Q Consensus 113 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 192 (557)
..+.|+|..|+|||.|++.+++.... ...--.+++++. .++..++...+.. ... ..+.+.++
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~-~~~g~~V~Yita------eef~~el~~al~~-------~~~----~~f~~~y~ 376 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARR-LYPGTRVRYVSS------EEFTNEFINSIRD-------GKG----DSFRRRYR 376 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHH-hCCCCeEEEeeH------HHHHHHHHHHHHh-------ccH----HHHHHHhh
Confidence 45899999999999999999998621 111123455543 3444444444321 111 12333333
Q ss_pred CCcEEEEEccCCCcc---cc-ccccccCCCCCCCCcEEEEeeCCh---------HHHhcccCCCceecCCCCHHHHHHHH
Q 036236 193 EKRFVLLLDDIWERV---DL-TKVGVPLPGPQNTTSKVVFTTRSI---------DVCGSMESHRKFPVACLSEEDAWELF 259 (557)
Q Consensus 193 ~k~~LlVlDdv~~~~---~~-~~l~~~l~~~~~~~s~iliTtR~~---------~v~~~~~~~~~~~l~~L~~~ea~~L~ 259 (557)
+ .=+|||||+.... .+ +.+...+......+..|||||... .+.+.+...-.+.+.+.+.+.-.+++
T Consensus 377 ~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL 455 (617)
T PRK14086 377 E-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAIL 455 (617)
T ss_pred c-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHH
Confidence 2 3478999996331 11 122222222112125688888753 23444556678899999999999999
Q ss_pred HHHhCCCccCCCccHHHHHHHHHHHhCCCchHH
Q 036236 260 REKVGQETLESHHDIVELAQTVARECDGLPLAL 292 (557)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai 292 (557)
.+++.......+ ++++.-|++++.+..-.|
T Consensus 456 ~kka~~r~l~l~---~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 456 RKKAVQEQLNAP---PEVLEFIASRISRNIREL 485 (617)
T ss_pred HHHHHhcCCCCC---HHHHHHHHHhccCCHHHH
Confidence 998865543333 357777888877665444
No 140
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.05 E-value=5.1e-05 Score=77.44 Aligned_cols=170 Identities=20% Similarity=0.282 Sum_probs=95.6
Q ss_pred cccchhHHHHHHHHHHhc---c---------CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHH
Q 036236 91 TIVGLQSQLEQVWRCLVV---E---------ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLE 158 (557)
Q Consensus 91 ~~vGr~~~~~~l~~~L~~---~---------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 158 (557)
.+.|.+.++++|.+.+.. . ...+.|.++|++|+|||++|+.+++.. ...| +.+...
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el---~~~f-----i~V~~s---- 251 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET---SATF-----LRVVGS---- 251 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh---CCCE-----EEEecc----
Confidence 467899999988887741 1 245678899999999999999999986 2333 222111
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHH-HHhcCCcEEEEEccCCCccc----------------cccccccCCCC-C
Q 036236 159 KIQEDIGKKIGLFDDSWKSKSVEEKAVDIF-RSLREKRFVLLLDDIWERVD----------------LTKVGVPLPGP-Q 220 (557)
Q Consensus 159 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~~~----------------~~~l~~~l~~~-~ 220 (557)
.+.... ++ .. ......+. ....+.+.+|+||+++.... +..+...+... .
T Consensus 252 eL~~k~---~G--------e~-~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~ 319 (438)
T PTZ00361 252 ELIQKY---LG--------DG-PKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS 319 (438)
T ss_pred hhhhhh---cc--------hH-HHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc
Confidence 111110 00 11 11222222 22345788999999852110 01111111111 1
Q ss_pred CCCcEEEEeeCChHHHhc-----ccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCC
Q 036236 221 NTTSKVVFTTRSIDVCGS-----MESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGL 288 (557)
Q Consensus 221 ~~~s~iliTtR~~~v~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 288 (557)
..+.+||+||........ -.....++++..+.++..++|..++.........++ ..++..+.|.
T Consensus 320 ~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl----~~la~~t~g~ 388 (438)
T PTZ00361 320 RGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDL----EEFIMAKDEL 388 (438)
T ss_pred cCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCH----HHHHHhcCCC
Confidence 222678888876544222 122457899999999999999987755443333333 3455555554
No 141
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.04 E-value=0.0001 Score=76.36 Aligned_cols=160 Identities=18% Similarity=0.219 Sum_probs=90.0
Q ss_pred CcccchhHHHHHHHHHHhc------------cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCC--CCcceEEEEEeCCcc
Q 036236 90 PTIVGLQSQLEQVWRCLVV------------EESVGIIGLYGMGGVGKTTLLTHINNKFLENP--INFDCVIWVVVSKDL 155 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~------------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~--~~f~~~~wv~~~~~~ 155 (557)
..+.|.+..+++|.+.+.. -...+-+.++|++|+|||++|+.+++...... .......|+.+...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~- 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP- 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch-
Confidence 3567899999998887641 12456799999999999999999999872110 01223445544331
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-----cCCcEEEEEccCCCcc---------c-----cccccccC
Q 036236 156 RLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSL-----REKRFVLLLDDIWERV---------D-----LTKVGVPL 216 (557)
Q Consensus 156 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~---------~-----~~~l~~~l 216 (557)
.++.. . . ...+.....+.+.. .+++++|+||+++... + +..+...+
T Consensus 261 ---eLl~k----y-------v-Gete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~L 325 (512)
T TIGR03689 261 ---ELLNK----Y-------V-GETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSEL 325 (512)
T ss_pred ---hhccc----c-------c-chHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHh
Confidence 11110 0 0 01111222222221 3478999999996321 1 11222222
Q ss_pred CCCC-CCCcEEEEeeCChHHH-----hcccCCCceecCCCCHHHHHHHHHHHhCC
Q 036236 217 PGPQ-NTTSKVVFTTRSIDVC-----GSMESHRKFPVACLSEEDAWELFREKVGQ 265 (557)
Q Consensus 217 ~~~~-~~~s~iliTtR~~~v~-----~~~~~~~~~~l~~L~~~ea~~L~~~~~~~ 265 (557)
.... .++..||.||...... +.-.-+..++++..+.++..++|..++..
T Consensus 326 Dgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 326 DGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred cccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 2211 1224556666554431 11122456899999999999999988754
No 142
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.03 E-value=0.0002 Score=70.80 Aligned_cols=169 Identities=12% Similarity=0.068 Sum_probs=89.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCC-----CCCC-CCCCCHHHH
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGL-----FDDS-WKSKSVEEK 183 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-----~~~~-~~~~~~~~~ 183 (557)
.-.+.+.++|+.|+|||++|..+++...- ....+ ...++.....+.+...-.. ..+. ......++.
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC-~~~~~-------~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~i 91 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLC-EAPQG-------GGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQV 91 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcC-CCCCC-------CCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHH
Confidence 34567889999999999999999887621 11000 0000111111111110000 0000 011122222
Q ss_pred HHHHHHHh-----cCCcEEEEEccCCCc--cccccccccCCCCCCCCcEEEEeeCChHH-H-hcccCCCceecCCCCHHH
Q 036236 184 AVDIFRSL-----REKRFVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTRSIDV-C-GSMESHRKFPVACLSEED 254 (557)
Q Consensus 184 ~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~iliTtR~~~v-~-~~~~~~~~~~l~~L~~~e 254 (557)
.. +.+.+ .+++-++|+|+++.. .....++..+.....+ +.+|+||.+... . ...+-...+.+.+++.++
T Consensus 92 R~-l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~-~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~ 169 (328)
T PRK05707 92 RE-LVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGD-TVLLLISHQPSRLLPTIKSRCQQQACPLPSNEE 169 (328)
T ss_pred HH-HHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCC-eEEEEEECChhhCcHHHHhhceeeeCCCcCHHH
Confidence 22 22222 234445678999753 3344454555443334 777777777543 2 222335678999999999
Q ss_pred HHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHH
Q 036236 255 AWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTI 295 (557)
Q Consensus 255 a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 295 (557)
+.+.+.+...... .+.+..++..++|.|+....+
T Consensus 170 ~~~~L~~~~~~~~-------~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 170 SLQWLQQALPESD-------ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHHHHHHhcccCC-------hHHHHHHHHHcCCCHHHHHHH
Confidence 9999887642111 234567789999999765444
No 143
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.02 E-value=2.8e-05 Score=86.81 Aligned_cols=155 Identities=17% Similarity=0.228 Sum_probs=90.1
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCC---cceEEEEEeCCccCHHHHHHHHHH
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPIN---FDCVIWVVVSKDLRLEKIQEDIGK 166 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~---f~~~~wv~~~~~~~~~~~~~~i~~ 166 (557)
..++||++++++++..|. .....-+.++|++|+|||++|+.++......... -+..+|. + +...++ .
T Consensus 179 ~~~igr~~ei~~~~~~L~-r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~----a 248 (821)
T CHL00095 179 DPVIGREKEIERVIQILG-RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL----A 248 (821)
T ss_pred CCCCCcHHHHHHHHHHHc-ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh----c
Confidence 357999999999999998 4444566799999999999999998886321111 1234442 1 111111 0
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHHh-cCCcEEEEEccCCCcc---------ccccccccCCCCCCCCcEEEEeeCChHHH
Q 036236 167 KIGLFDDSWKSKSVEEKAVDIFRSL-REKRFVLLLDDIWERV---------DLTKVGVPLPGPQNTTSKVVFTTRSIDVC 236 (557)
Q Consensus 167 ~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~---------~~~~l~~~l~~~~~~~s~iliTtR~~~v~ 236 (557)
+.. -..+.++....+.+.+ ..++.+|++|++.... +...+..+ ....|.-++|.+|...+..
T Consensus 249 --g~~----~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp--~l~rg~l~~IgaTt~~ey~ 320 (821)
T CHL00095 249 --GTK----YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKP--ALARGELQCIGATTLDEYR 320 (821)
T ss_pred --cCC----CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHH--HHhCCCcEEEEeCCHHHHH
Confidence 100 1123344444444443 3468999999985211 11122222 1223336677766655432
Q ss_pred hc-------ccCCCceecCCCCHHHHHHHHHHH
Q 036236 237 GS-------MESHRKFPVACLSEEDAWELFREK 262 (557)
Q Consensus 237 ~~-------~~~~~~~~l~~L~~~ea~~L~~~~ 262 (557)
.. ......+.+...+.++...++...
T Consensus 321 ~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 321 KHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 11 123356788889999988887654
No 144
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.01 E-value=0.00016 Score=73.27 Aligned_cols=172 Identities=18% Similarity=0.265 Sum_probs=96.7
Q ss_pred CcccchhHHHHHHHHHHhc---c---------CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCH
Q 036236 90 PTIVGLQSQLEQVWRCLVV---E---------ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRL 157 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~---~---------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 157 (557)
..+.|.+..+++|.+.+.. . ...+-|.++|++|+|||++|+.+++.. ...| +.+..
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l---~~~f-----i~i~~---- 212 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT---TATF-----IRVVG---- 212 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE-----EEEeh----
Confidence 3578999998888876641 1 246789999999999999999999986 2232 11111
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH-HHhcCCcEEEEEccCCCcc------------c----cccccccCCCC-
Q 036236 158 EKIQEDIGKKIGLFDDSWKSKSVEEKAVDIF-RSLREKRFVLLLDDIWERV------------D----LTKVGVPLPGP- 219 (557)
Q Consensus 158 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~~------------~----~~~l~~~l~~~- 219 (557)
..+.... ++ .. ......+. ......+.+|+||+++... . +..+...+...
T Consensus 213 s~l~~k~---~g--------e~-~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~ 280 (398)
T PTZ00454 213 SEFVQKY---LG--------EG-PRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFD 280 (398)
T ss_pred HHHHHHh---cc--------hh-HHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccC
Confidence 1111111 11 11 11222222 2334578999999985310 0 11111112111
Q ss_pred CCCCcEEEEeeCChHHHh-----cccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCc
Q 036236 220 QNTTSKVVFTTRSIDVCG-----SMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLP 289 (557)
Q Consensus 220 ~~~~s~iliTtR~~~v~~-----~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 289 (557)
...+..||+||....... ...-+..++++..+.++...+|..+..........+ ...+++.+.|.-
T Consensus 281 ~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd----~~~la~~t~g~s 351 (398)
T PTZ00454 281 QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVD----LEDFVSRPEKIS 351 (398)
T ss_pred CCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccC----HHHHHHHcCCCC
Confidence 122267888887654321 112345688999999998888887765443333333 345566666653
No 145
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.97 E-value=2.2e-06 Score=82.66 Aligned_cols=93 Identities=24% Similarity=0.286 Sum_probs=71.4
Q ss_pred cccccccCCCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccC-CccccCCCCCCeeeccC-CCCcccC
Q 036236 461 NQIETLSEVPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQL-PVGMSKLGSLELLDISH-TFIKELP 538 (557)
Q Consensus 461 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~l-P~~i~~L~~L~~L~l~~-n~l~~lP 538 (557)
..+.++|..- -+.-..+.|..|+ ++.||+..|+.+++||.||||+| .|+.| |..|..|.+|..|-+-+ |+|+.||
T Consensus 56 ~GL~eVP~~L-P~~tveirLdqN~-I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~ 132 (498)
T KOG4237|consen 56 KGLTEVPANL-PPETVEIRLDQNQ-ISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLP 132 (498)
T ss_pred CCcccCcccC-CCcceEEEeccCC-cccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhh
Confidence 3444444321 1355677888887 88888888888999999999988 88887 88888888887776665 7899998
Q ss_pred hH-HHhHhhhhhcCCCCCC
Q 036236 539 EE-LKKLLEAIQRAPRPDR 556 (557)
Q Consensus 539 ~~-i~~L~~L~~L~~~~~~ 556 (557)
.. |+.|..|+.|.+|+++
T Consensus 133 k~~F~gL~slqrLllNan~ 151 (498)
T KOG4237|consen 133 KGAFGGLSSLQRLLLNANH 151 (498)
T ss_pred hhHhhhHHHHHHHhcChhh
Confidence 76 7888888888888764
No 146
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.96 E-value=0.00029 Score=64.84 Aligned_cols=183 Identities=16% Similarity=0.168 Sum_probs=105.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEe-CCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVV-SKDLRLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIF 188 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 188 (557)
++.+++.|+|.-|.|||.+++....... -+.++-+.+ ....+...+...+...+..+.........++....+.
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~-----~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~ 123 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLN-----EDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELA 123 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcC-----CCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHH
Confidence 4567999999999999999996665551 111222333 3345677888888888876321111222333334444
Q ss_pred HHh-cCCc-EEEEEccCCCc--ccccccccc--CCCCCCCCcEEEEeeCC--------hHHHhcccCCCc-eecCCCCHH
Q 036236 189 RSL-REKR-FVLLLDDIWER--VDLTKVGVP--LPGPQNTTSKVVFTTRS--------IDVCGSMESHRK-FPVACLSEE 253 (557)
Q Consensus 189 ~~l-~~k~-~LlVlDdv~~~--~~~~~l~~~--l~~~~~~~s~iliTtR~--------~~v~~~~~~~~~-~~l~~L~~~ 253 (557)
... ++++ ..+++|+.... ..++.++.. +.....+.-+|+..-.. ......-..... |++.|++.+
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~ 203 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEA 203 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChH
Confidence 443 4566 89999998542 222222111 11111110223332211 111111111223 899999999
Q ss_pred HHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHHHH
Q 036236 254 DAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTIGR 297 (557)
Q Consensus 254 ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~ 297 (557)
+...++..++.....+.+---.+....|.....|.|.+|..++.
T Consensus 204 ~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 204 ETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 99999988876554333333346778899999999999988764
No 147
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.94 E-value=0.00014 Score=72.60 Aligned_cols=152 Identities=20% Similarity=0.223 Sum_probs=91.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcc-eEEEEEeCCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFD-CVIWVVVSKDLRLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFR 189 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 189 (557)
....+.|+|..|.|||.|++++.+... ....+ .++.+ + .+.....+...+.. .....+++
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~--~~~~~a~v~y~--~----se~f~~~~v~a~~~-----------~~~~~Fk~ 172 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEAL--ANGPNARVVYL--T----SEDFTNDFVKALRD-----------NEMEKFKE 172 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHH--hhCCCceEEec--c----HHHHHHHHHHHHHh-----------hhHHHHHH
Confidence 478999999999999999999999972 22222 23333 2 23444444444321 12334444
Q ss_pred HhcCCcEEEEEccCCCcc---c-cccccccCCCCCCCCcEEEEeeCChH---------HHhcccCCCceecCCCCHHHHH
Q 036236 190 SLREKRFVLLLDDIWERV---D-LTKVGVPLPGPQNTTSKVVFTTRSID---------VCGSMESHRKFPVACLSEEDAW 256 (557)
Q Consensus 190 ~l~~k~~LlVlDdv~~~~---~-~~~l~~~l~~~~~~~s~iliTtR~~~---------v~~~~~~~~~~~l~~L~~~ea~ 256 (557)
.. .-=++++||++.-. . -+.+...|......+..||+|++... +.+.+...-.+.+.+.+.+...
T Consensus 173 ~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ 250 (408)
T COG0593 173 KY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRL 250 (408)
T ss_pred hh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHH
Confidence 44 33489999995321 1 22233333322222247999997532 3445566678999999999999
Q ss_pred HHHHHHhCCCccCCCccHHHHHHHHHHHhC
Q 036236 257 ELFREKVGQETLESHHDIVELAQTVARECD 286 (557)
Q Consensus 257 ~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 286 (557)
.++.+++.......++ ++..-|++...
T Consensus 251 aiL~kka~~~~~~i~~---ev~~~la~~~~ 277 (408)
T COG0593 251 AILRKKAEDRGIEIPD---EVLEFLAKRLD 277 (408)
T ss_pred HHHHHHHHhcCCCCCH---HHHHHHHHHhh
Confidence 9999987655544433 34444554443
No 148
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.92 E-value=1.2e-05 Score=70.76 Aligned_cols=103 Identities=24% Similarity=0.326 Sum_probs=85.5
Q ss_pred ccceEEEccccccccccCCCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCc--cccCCCCCCeee
Q 036236 451 ENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPV--GMSKLGSLELLD 528 (557)
Q Consensus 451 ~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~--~i~~L~~L~~L~ 528 (557)
.....++|++|.+..++.++.++.|.+|.|.+|. +..|.+..-..+++|..|.|.+| +|.+|-+ .+..++.|++|.
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEecCCc-ceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceee
Confidence 3566789999999999999999999999999998 88888875566788999999999 7876632 466788999999
Q ss_pred ccCCCCcccCh----HHHhHhhhhhcCCCCC
Q 036236 529 ISHTFIKELPE----ELKKLLEAIQRAPRPD 555 (557)
Q Consensus 529 l~~n~l~~lP~----~i~~L~~L~~L~~~~~ 555 (557)
+-+|.++..+. -+..+++|+.||-.++
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 99999887664 2678889998887654
No 149
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.91 E-value=0.0005 Score=67.37 Aligned_cols=181 Identities=12% Similarity=0.056 Sum_probs=96.6
Q ss_pred hHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcce-----EEEEEeCCccCHHHHHHHHHHHhC-
Q 036236 96 QSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDC-----VIWVVVSKDLRLEKIQEDIGKKIG- 169 (557)
Q Consensus 96 ~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~-----~~wv~~~~~~~~~~~~~~i~~~l~- 169 (557)
+...+.+...+..+.-...+.++|+.|+||+++|..+++..-- .....+ .-|+..+..+|+.. +.
T Consensus 10 ~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC-~~~~~~~~c~~c~~~~~g~HPD~~~--------i~~ 80 (319)
T PRK08769 10 QRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLA-SGPDPAAAQRTRQLIAAGTHPDLQL--------VSF 80 (319)
T ss_pred HHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhC-CCCCCCCcchHHHHHhcCCCCCEEE--------Eec
Confidence 3455667777763344567899999999999999998877621 110000 00000000000000 00
Q ss_pred CCCCCC----CCCCHHHHHHHHHHHh-----cCCcEEEEEccCCCcc--ccccccccCCCCCCCCcEEEEeeCChH-HH-
Q 036236 170 LFDDSW----KSKSVEEKAVDIFRSL-----REKRFVLLLDDIWERV--DLTKVGVPLPGPQNTTSKVVFTTRSID-VC- 236 (557)
Q Consensus 170 ~~~~~~----~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~~~s~iliTtR~~~-v~- 236 (557)
.+.... ....+++ +..+.+.+ .+++-++|+|+++... ....++..+..-..+ +.+|++|.+.. +.
T Consensus 81 ~p~~~~~k~~~~I~idq-IR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~-~~fiL~~~~~~~lLp 158 (319)
T PRK08769 81 IPNRTGDKLRTEIVIEQ-VREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPG-RYLWLISAQPARLPA 158 (319)
T ss_pred CCCcccccccccccHHH-HHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCC-CeEEEEECChhhCch
Confidence 000000 0011222 22233322 2455699999996432 233444444443334 77777776543 22
Q ss_pred hcccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHHH
Q 036236 237 GSMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTIG 296 (557)
Q Consensus 237 ~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~ 296 (557)
...+-...+.+.+++.+++.+.+.+. +.. ...+..++..++|.|+....+.
T Consensus 159 TIrSRCq~i~~~~~~~~~~~~~L~~~-~~~--------~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 159 TIRSRCQRLEFKLPPAHEALAWLLAQ-GVS--------ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred HHHhhheEeeCCCcCHHHHHHHHHHc-CCC--------hHHHHHHHHHcCCCHHHHHHHh
Confidence 22233567889999999999888753 211 1235678999999998765443
No 150
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.90 E-value=0.00044 Score=73.03 Aligned_cols=179 Identities=18% Similarity=0.192 Sum_probs=96.3
Q ss_pred CcccchhHHHHHHHHHHh---c--------cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHH
Q 036236 90 PTIVGLQSQLEQVWRCLV---V--------EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLE 158 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~---~--------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 158 (557)
..++|.+..++++.+.+. . ....+-+.++|++|+|||++|+.+++.. ...| +.++. .
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~-----~~i~~----~ 122 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---GVPF-----FSISG----S 122 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCe-----eeccH----H
Confidence 457898877766655443 1 1234568999999999999999999876 2222 22221 1
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCccc----------------cccccccCCCC-CC
Q 036236 159 KIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWERVD----------------LTKVGVPLPGP-QN 221 (557)
Q Consensus 159 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~l~~~l~~~-~~ 221 (557)
.+.... .+ .........+.......+.+|+|||++.... +..+...+... ..
T Consensus 123 ~~~~~~---~g--------~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~ 191 (495)
T TIGR01241 123 DFVEMF---VG--------VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN 191 (495)
T ss_pred HHHHHH---hc--------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC
Confidence 111111 01 1112222233333445779999999953210 01111111111 12
Q ss_pred CCcEEEEeeCChHH-----HhcccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCC-chHHHHH
Q 036236 222 TTSKVVFTTRSIDV-----CGSMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGL-PLALLTI 295 (557)
Q Consensus 222 ~~s~iliTtR~~~v-----~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLai~~~ 295 (557)
++..||.||..+.. .+...-+..+.++..+.++-.++|..++......... ....+++.+.|. +--|..+
T Consensus 192 ~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~----~l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 192 TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDV----DLKAVARRTPGFSGADLANL 267 (495)
T ss_pred CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcch----hHHHHHHhCCCCCHHHHHHH
Confidence 22456666665432 1111234578899999988899998877543322222 244777888774 3444433
No 151
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.90 E-value=4.3e-05 Score=83.44 Aligned_cols=156 Identities=19% Similarity=0.291 Sum_probs=90.6
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCC---cceEEEEEeCCccCHHHHHHHHHH
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPIN---FDCVIWVVVSKDLRLEKIQEDIGK 166 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~---f~~~~wv~~~~~~~~~~~~~~i~~ 166 (557)
..++||++++++++..|.. ....-+.++|++|+|||++|+.++......... .++.+|.. +... ++.
T Consensus 186 ~~liGR~~ei~~~i~iL~r-~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~----lla 255 (758)
T PRK11034 186 DPLIGREKELERAIQVLCR-RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGS----LLA 255 (758)
T ss_pred CcCcCCCHHHHHHHHHHhc-cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHH----Hhc
Confidence 3589999999999999983 344556789999999999999998875221111 23444421 1111 110
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHHh-cCCcEEEEEccCCCc----------cccccccccCCCCCCCCcEEEEeeCChHH
Q 036236 167 KIGLFDDSWKSKSVEEKAVDIFRSL-REKRFVLLLDDIWER----------VDLTKVGVPLPGPQNTTSKVVFTTRSIDV 235 (557)
Q Consensus 167 ~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~----------~~~~~l~~~l~~~~~~~s~iliTtR~~~v 235 (557)
+.. ...+.+.....+.+.+ +.++.+|++|++... .+...+..++. ..|.-++|.+|...+.
T Consensus 256 --G~~----~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L--~~g~i~vIgATt~~E~ 327 (758)
T PRK11034 256 --GTK----YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL--SSGKIRVIGSTTYQEF 327 (758)
T ss_pred --ccc----hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH--hCCCeEEEecCChHHH
Confidence 000 1123334444444444 346789999999532 11112222222 2333566666654442
Q ss_pred Hhc-------ccCCCceecCCCCHHHHHHHHHHHh
Q 036236 236 CGS-------MESHRKFPVACLSEEDAWELFREKV 263 (557)
Q Consensus 236 ~~~-------~~~~~~~~l~~L~~~ea~~L~~~~~ 263 (557)
... ..-...+.+++++.+++.+++....
T Consensus 328 ~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 328 SNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 111 1123578999999999999988653
No 152
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.90 E-value=6.7e-06 Score=84.88 Aligned_cols=104 Identities=25% Similarity=0.385 Sum_probs=72.9
Q ss_pred ccccccceEEEccccccccccC-CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCccccCCCCCC
Q 036236 447 VKGWENVRRLSLMQNQIETLSE-VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVGMSKLGSLE 525 (557)
Q Consensus 447 ~~~~~~l~~l~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~i~~L~~L~ 525 (557)
+..+.++..+++..|.++.+.. ...+++|++|++++|. +..+.. +..++.|+.|++++| .|..++ .+..+.+|+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~--l~~l~~L~~L~l~~N-~i~~~~-~~~~l~~L~ 165 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEG--LSTLTLLKELNLSGN-LISDIS-GLESLKSLK 165 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccc-cccccc--hhhccchhhheeccC-cchhcc-CCccchhhh
Confidence 4455677777787777777777 6777788888888777 666665 566777778888877 777665 455577777
Q ss_pred eeeccCCCCcccChH-HHhHhhhhhcCCCCC
Q 036236 526 LLDISHTFIKELPEE-LKKLLEAIQRAPRPD 555 (557)
Q Consensus 526 ~L~l~~n~l~~lP~~-i~~L~~L~~L~~~~~ 555 (557)
.+++++|.+..++.. +..+.+|..+.+.++
T Consensus 166 ~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDELSELISLEELDLGGN 196 (414)
T ss_pred cccCCcchhhhhhhhhhhhccchHHHhccCC
Confidence 888888877777664 466666665555443
No 153
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=0.00016 Score=69.56 Aligned_cols=180 Identities=22% Similarity=0.301 Sum_probs=107.9
Q ss_pred ccchhHHHHHHHHHHhc---c---------CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHH
Q 036236 92 IVGLQSQLEQVWRCLVV---E---------ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEK 159 (557)
Q Consensus 92 ~vGr~~~~~~l~~~L~~---~---------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~ 159 (557)
+=|-++++++|.+.+.- + +.++-|.+||++|.|||-||++|+++. ...| +.+... +
T Consensus 153 IGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T---~AtF-----IrvvgS----E 220 (406)
T COG1222 153 IGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT---DATF-----IRVVGS----E 220 (406)
T ss_pred ccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CceE-----EEeccH----H
Confidence 44789999999887751 1 367789999999999999999999986 3333 333332 2
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcC-CcEEEEEccCCCc------------c----ccccccccCCCCC-C
Q 036236 160 IQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSLRE-KRFVLLLDDIWER------------V----DLTKVGVPLPGPQ-N 221 (557)
Q Consensus 160 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~------------~----~~~~l~~~l~~~~-~ 221 (557)
+.+.. +| +-..+...+++.-+. .+.+|++|.++.- . ..-+++..+.+.. .
T Consensus 221 lVqKY---iG---------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~ 288 (406)
T COG1222 221 LVQKY---IG---------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR 288 (406)
T ss_pred HHHHH---hc---------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC
Confidence 22221 11 113445555555544 6899999998631 0 0112222232222 2
Q ss_pred CCcEEEEeeCChHH-----HhcccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCc----hHH
Q 036236 222 TTSKVVFTTRSIDV-----CGSMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLP----LAL 292 (557)
Q Consensus 222 ~~s~iliTtR~~~v-----~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P----Lai 292 (557)
+..|||..|...+. .+.-.-++.++++.-+.+.-.++|.-++........-+++ .+++.|.|.- -|+
T Consensus 289 ~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e----~la~~~~g~sGAdlkai 364 (406)
T COG1222 289 GNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLE----LLARLTEGFSGADLKAI 364 (406)
T ss_pred CCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHH----HHHHhcCCCchHHHHHH
Confidence 34789988876554 2222345678888666666667888887766655555544 4556666653 344
Q ss_pred HHHHHHh
Q 036236 293 LTIGRAM 299 (557)
Q Consensus 293 ~~~~~~l 299 (557)
.+=|+++
T Consensus 365 ctEAGm~ 371 (406)
T COG1222 365 CTEAGMF 371 (406)
T ss_pred HHHHhHH
Confidence 4445544
No 154
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.89 E-value=0.0006 Score=66.93 Aligned_cols=177 Identities=10% Similarity=0.042 Sum_probs=96.6
Q ss_pred HHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCC-----CC
Q 036236 98 QLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGL-----FD 172 (557)
Q Consensus 98 ~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-----~~ 172 (557)
..+.+.+.+..+.-.....++|+.|+||+++|..++...-- ..... ...++.....+.+...-.. ..
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC-~~~~~-------~~~Cg~C~sC~~~~~g~HPD~~~i~p 81 (325)
T PRK06871 10 TYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMC-QTPQG-------DQPCGQCHSCHLFQAGNHPDFHILEP 81 (325)
T ss_pred HHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcC-CCCCC-------CCCCCCCHHHHHHhcCCCCCEEEEcc
Confidence 44566777763344577889999999999999999877621 11000 0011111111111110000 00
Q ss_pred CCCCCCCHHHHHHHHHHHh-----cCCcEEEEEccCCCc--cccccccccCCCCCCCCcEEEEeeCChH-HH-hcccCCC
Q 036236 173 DSWKSKSVEEKAVDIFRSL-----REKRFVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTRSID-VC-GSMESHR 243 (557)
Q Consensus 173 ~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~iliTtR~~~-v~-~~~~~~~ 243 (557)
.......+++.. .+.+.+ .+++=++|+|+++.. .....++..+...... +.+|++|.+.. +. ...+-..
T Consensus 82 ~~~~~I~id~iR-~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~-~~fiL~t~~~~~llpTI~SRC~ 159 (325)
T PRK06871 82 IDNKDIGVDQVR-EINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPN-TYFLLQADLSAALLPTIYSRCQ 159 (325)
T ss_pred ccCCCCCHHHHH-HHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCC-eEEEEEECChHhCchHHHhhce
Confidence 000111222222 222322 345668889999754 2344455555443344 77777777653 32 2233356
Q ss_pred ceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHH
Q 036236 244 KFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLAL 292 (557)
Q Consensus 244 ~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai 292 (557)
.+.+.+++.++..+.+....... ...+...+..++|.|+.+
T Consensus 160 ~~~~~~~~~~~~~~~L~~~~~~~--------~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 160 TWLIHPPEEQQALDWLQAQSSAE--------ISEILTALRINYGRPLLA 200 (325)
T ss_pred EEeCCCCCHHHHHHHHHHHhccC--------hHHHHHHHHHcCCCHHHH
Confidence 78999999999999888764221 123556788899999644
No 155
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.89 E-value=8.9e-05 Score=83.16 Aligned_cols=154 Identities=15% Similarity=0.176 Sum_probs=89.3
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCC----cceEEE-EEeCCccCHHHHHHHH
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPIN----FDCVIW-VVVSKDLRLEKIQEDI 164 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~----f~~~~w-v~~~~~~~~~~~~~~i 164 (557)
..++||+.++++++..|. ......+.++|++|+|||++|..++.+... ... .+..+| +.++ .+.
T Consensus 173 ~~~igr~~ei~~~~~~l~-r~~~~n~lL~G~pGvGKT~l~~~la~~i~~-~~~p~~l~~~~~~~l~~~------~l~--- 241 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLS-RRTKNNPVLIGEPGVGKTAIVEGLAQRIVN-GDVPESLKNKRLLALDMG------ALI--- 241 (852)
T ss_pred CcCCCcHHHHHHHHHHHh-cCCCCceEEEcCCCCCHHHHHHHHHHHHhc-cCCchhhcCCeEEEeeHH------HHh---
Confidence 458999999999999998 444556678999999999999999888621 111 122233 2211 111
Q ss_pred HHHhCCCCCCCCCCCHHHHHHHHHHHhc--CCcEEEEEccCCCcc---------ccccccccCCCCCCCCcEEEEeeCCh
Q 036236 165 GKKIGLFDDSWKSKSVEEKAVDIFRSLR--EKRFVLLLDDIWERV---------DLTKVGVPLPGPQNTTSKVVFTTRSI 233 (557)
Q Consensus 165 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~---------~~~~l~~~l~~~~~~~s~iliTtR~~ 233 (557)
. +.. ...+.+.....+...+. +++.+|++|++.... +...+..+. ...|.-++|.+|...
T Consensus 242 -a--~~~----~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~--l~~g~i~~IgaTt~~ 312 (852)
T TIGR03346 242 -A--GAK----YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPA--LARGELHCIGATTLD 312 (852)
T ss_pred -h--cch----hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchh--hhcCceEEEEeCcHH
Confidence 0 000 01123333444444432 468999999986321 111222222 223435666666554
Q ss_pred HHHh-------cccCCCceecCCCCHHHHHHHHHHHh
Q 036236 234 DVCG-------SMESHRKFPVACLSEEDAWELFREKV 263 (557)
Q Consensus 234 ~v~~-------~~~~~~~~~l~~L~~~ea~~L~~~~~ 263 (557)
+.-. .......+.++..+.++...++....
T Consensus 313 e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 313 EYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 4311 11223567899999999999887653
No 156
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.89 E-value=8.9e-05 Score=82.86 Aligned_cols=154 Identities=19% Similarity=0.199 Sum_probs=87.7
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCC----cc-eEEEEEeCCccCHHHHHHHH
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPIN----FD-CVIWVVVSKDLRLEKIQEDI 164 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~----f~-~~~wv~~~~~~~~~~~~~~i 164 (557)
..++||+.++++++..|. ......+.++|++|+|||++|+.++..... ... .+ .++++.++.- ..
T Consensus 178 ~~vigr~~ei~~~i~iL~-r~~~~n~lL~G~pGvGKT~l~~~la~~i~~-~~vp~~l~~~~~~~l~l~~l------~a-- 247 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQ-RRTKNNPVLIGEPGVGKTAIVEGLAQRIIN-GEVPEGLKGRRVLALDMGAL------VA-- 247 (857)
T ss_pred CcCCCCHHHHHHHHHHHh-cCCcCceEEECCCCCCHHHHHHHHHHHhhc-CCCchhhCCCEEEEEehhhh------hh--
Confidence 468999999999999998 445556779999999999999999988621 110 12 2223322211 00
Q ss_pred HHHhCCCCCCCCCCCHHHHHHHHHHHh--cCCcEEEEEccCCCcc---------ccccccccCCCCCCCCcEEEEeeCCh
Q 036236 165 GKKIGLFDDSWKSKSVEEKAVDIFRSL--REKRFVLLLDDIWERV---------DLTKVGVPLPGPQNTTSKVVFTTRSI 233 (557)
Q Consensus 165 ~~~l~~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~---------~~~~l~~~l~~~~~~~s~iliTtR~~ 233 (557)
+. . .....++....+...+ .+++.+|++|++.... +...+..+. ...|.-++|-+|...
T Consensus 248 ----g~---~-~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~--l~~g~l~~IgaTt~~ 317 (857)
T PRK10865 248 ----GA---K-YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPA--LARGELHCVGATTLD 317 (857)
T ss_pred ----cc---c-hhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcch--hhcCCCeEEEcCCCH
Confidence 00 0 1112233333333332 2468999999985321 112222222 233446777666654
Q ss_pred HHHhc-------ccCCCceecCCCCHHHHHHHHHHHh
Q 036236 234 DVCGS-------MESHRKFPVACLSEEDAWELFREKV 263 (557)
Q Consensus 234 ~v~~~-------~~~~~~~~l~~L~~~ea~~L~~~~~ 263 (557)
+.... ..-...+.+...+.++...++....
T Consensus 318 e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 318 EYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 43111 1122356677678888888886654
No 157
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.87 E-value=1.6e-05 Score=52.89 Aligned_cols=40 Identities=28% Similarity=0.353 Sum_probs=32.5
Q ss_pred CCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCC
Q 036236 473 PHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLP 515 (557)
Q Consensus 473 ~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP 515 (557)
++|++|++++|+ +..+|+. +++|++|++|++++| .++.+|
T Consensus 1 ~~L~~L~l~~N~-i~~l~~~-l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITDLPPE-LSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETSSS--SSHGGH-GTTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccCCC-CcccCch-HhCCCCCCEEEecCC-CCCCCc
Confidence 478899999998 8888886 889999999999999 787665
No 158
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.85 E-value=7e-05 Score=79.75 Aligned_cols=47 Identities=19% Similarity=0.299 Sum_probs=39.9
Q ss_pred CcccchhHHHHHHHHHHhc----cCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 90 PTIVGLQSQLEQVWRCLVV----EESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~----~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..++|.++.++++..++.. ....+++.|+|++|+||||+++.++...
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999873 1244679999999999999999998876
No 159
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.84 E-value=8.4e-06 Score=83.83 Aligned_cols=97 Identities=32% Similarity=0.416 Sum_probs=50.0
Q ss_pred cceEEEcccccccccc-CCCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCccccCCCCCCeeecc
Q 036236 452 NVRRLSLMQNQIETLS-EVPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVGMSKLGSLELLDIS 530 (557)
Q Consensus 452 ~l~~l~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~i~~L~~L~~L~l~ 530 (557)
+++.|++++|.+..+| ....+++|..|+++.|+ +..+|.. .+.++.|+.|++++| .+..+|..++.+.+|++|.++
T Consensus 141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~-~~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~ 217 (394)
T COG4886 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKL-LSNLSNLNNLDLSGN-KISDLPPEIELLSALEELDLS 217 (394)
T ss_pred hcccccccccchhhhhhhhhccccccccccCCch-hhhhhhh-hhhhhhhhheeccCC-ccccCchhhhhhhhhhhhhhc
Confidence 4555555555555553 33555555555555555 5555543 334555555555555 555555555444445555555
Q ss_pred CCCCcccChHHHhHhhhhhcC
Q 036236 531 HTFIKELPEELKKLLEAIQRA 551 (557)
Q Consensus 531 ~n~l~~lP~~i~~L~~L~~L~ 551 (557)
+|.+..+|..+.++.++..|.
T Consensus 218 ~N~~~~~~~~~~~~~~l~~l~ 238 (394)
T COG4886 218 NNSIIELLSSLSNLKNLSGLE 238 (394)
T ss_pred CCcceecchhhhhcccccccc
Confidence 554444444444444444443
No 160
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.83 E-value=0.00052 Score=68.26 Aligned_cols=162 Identities=8% Similarity=0.015 Sum_probs=86.8
Q ss_pred cccc-hhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhC
Q 036236 91 TIVG-LQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIG 169 (557)
Q Consensus 91 ~~vG-r~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 169 (557)
.++| .+..++.+...+..+.-.+...++|+.|+|||++|+.+.+...- ....... .++.....+.+...-.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c-~~~~~~~-------~cg~C~~c~~~~~~~h 77 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFC-LERNGVE-------PCGTCTNCKRIDSGNH 77 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCC-CCCCCCC-------CCCcCHHHHHHhcCCC
Confidence 4567 77788888888874445567799999999999999999887521 1101000 0000011111110000
Q ss_pred CC----CCCCCCCCHHHHHHHHHHH-----hcCCcEEEEEccCCCcc--ccccccccCCCCCCCCcEEEEeeCChH-HH-
Q 036236 170 LF----DDSWKSKSVEEKAVDIFRS-----LREKRFVLLLDDIWERV--DLTKVGVPLPGPQNTTSKVVFTTRSID-VC- 236 (557)
Q Consensus 170 ~~----~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~~~s~iliTtR~~~-v~- 236 (557)
.+ .........++... +.+. ..+.+=++|+|+++... ....++..+...... +.+|++|.+.. +.
T Consensus 78 pD~~~i~~~~~~i~id~ir~-l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~-~~~Il~t~~~~~ll~ 155 (329)
T PRK08058 78 PDVHLVAPDGQSIKKDQIRY-LKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGG-TTAILLTENKHQILP 155 (329)
T ss_pred CCEEEeccccccCCHHHHHH-HHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCC-ceEEEEeCChHhCcH
Confidence 00 00001112222222 2222 23445579999986432 234455555443344 77777776543 22
Q ss_pred hcccCCCceecCCCCHHHHHHHHHHH
Q 036236 237 GSMESHRKFPVACLSEEDAWELFREK 262 (557)
Q Consensus 237 ~~~~~~~~~~l~~L~~~ea~~L~~~~ 262 (557)
...+....+++.+++.++..+.+.+.
T Consensus 156 TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 156 TILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred HHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 22234567899999999998888653
No 161
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.80 E-value=0.0021 Score=64.25 Aligned_cols=201 Identities=17% Similarity=0.257 Sum_probs=123.1
Q ss_pred hhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHH-HHHHhhcccCCCCcceEEEEEeCCc---cCHHHHHHHHHHHhCC
Q 036236 95 LQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLL-THINNKFLENPINFDCVIWVVVSKD---LRLEKIQEDIGKKIGL 170 (557)
Q Consensus 95 r~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa-~~v~~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l~~ 170 (557)
|.+.+++|..||. +.....|.|.||-|+||+.|+ .++.++. . .+..++|.+- .+-..++..++.++|.
T Consensus 1 R~e~~~~L~~wL~-e~~~TFIvV~GPrGSGK~elV~d~~L~~r-~------~vL~IDC~~i~~ar~D~~~I~~lA~qvGY 72 (431)
T PF10443_consen 1 RKEAIEQLKSWLN-ENPNTFIVVQGPRGSGKRELVMDHVLKDR-K------NVLVIDCDQIVKARGDAAFIKNLASQVGY 72 (431)
T ss_pred CchHHHHHHHHHh-cCCCeEEEEECCCCCCccHHHHHHHHhCC-C------CEEEEEChHhhhccChHHHHHHHHHhcCC
Confidence 5678899999999 666679999999999999999 7776654 1 1666665442 2334566666666654
Q ss_pred CC-----------------------CCCCCCCHHHHHHHHHHH----h--------------------------cCCcEE
Q 036236 171 FD-----------------------DSWKSKSVEEKAVDIFRS----L--------------------------REKRFV 197 (557)
Q Consensus 171 ~~-----------------------~~~~~~~~~~~~~~l~~~----l--------------------------~~k~~L 197 (557)
-+ ..+. .+.+.....+.+. | ..++-+
T Consensus 73 ~PvFsw~nSiss~IDLa~qGltGqKaGfS-es~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PV 151 (431)
T PF10443_consen 73 FPVFSWMNSISSFIDLAVQGLTGQKAGFS-ESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPV 151 (431)
T ss_pred CcchHHHHHHHHHHHHHHhhccccccCCC-CChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCE
Confidence 21 1111 1222222221111 1 012569
Q ss_pred EEEccCCCcccc-----c---cccccCCCCCCCCcEEEEeeCChHHHh----cc--cCCCceecCCCCHHHHHHHHHHHh
Q 036236 198 LLLDDIWERVDL-----T---KVGVPLPGPQNTTSKVVFTTRSIDVCG----SM--ESHRKFPVACLSEEDAWELFREKV 263 (557)
Q Consensus 198 lVlDdv~~~~~~-----~---~l~~~l~~~~~~~s~iliTtR~~~v~~----~~--~~~~~~~l~~L~~~ea~~L~~~~~ 263 (557)
||+||+....+- + +....+... +- .+||++|-+..... .+ ...+.+.|.-.+++.|.++...++
T Consensus 152 VVIdnF~~k~~~~~~iy~~laeWAa~Lv~~-nI-AHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L 229 (431)
T PF10443_consen 152 VVIDNFLHKAEENDFIYDKLAEWAASLVQN-NI-AHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQL 229 (431)
T ss_pred EEEcchhccCcccchHHHHHHHHHHHHHhc-Cc-cEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHh
Confidence 999998532111 1 111122222 22 57888887654432 33 245678999999999999999988
Q ss_pred CCCccC------------CC-----ccHHHHHHHHHHHhCCCchHHHHHHHHhccCCCHH
Q 036236 264 GQETLE------------SH-----HDIVELAQTVARECDGLPLALLTIGRAMACKRTAE 306 (557)
Q Consensus 264 ~~~~~~------------~~-----~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~~~~~ 306 (557)
...... .. .....-....++..||--.-+..+++.++...++.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~ 289 (431)
T PF10443_consen 230 DEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPE 289 (431)
T ss_pred cccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHH
Confidence 653110 00 12334456788889999999999999998765443
No 162
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.79 E-value=9.1e-05 Score=63.59 Aligned_cols=89 Identities=25% Similarity=0.069 Sum_probs=49.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 036236 112 VGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSL 191 (557)
Q Consensus 112 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 191 (557)
...+.|+|++|+||||+++.++.... .....++++..+........... ...... .............+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~ 74 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELG---PPGGGVIYIDGEDILEEVLDQLL-LIIVGG---KKASGSGELRLRLALALA 74 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccC---CCCCCEEEECCEEccccCHHHHH-hhhhhc---cCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999999872 21133555554433222111111 000110 012222333334444444
Q ss_pred cCC-cEEEEEccCCCcc
Q 036236 192 REK-RFVLLLDDIWERV 207 (557)
Q Consensus 192 ~~k-~~LlVlDdv~~~~ 207 (557)
+.. ..++++|++....
T Consensus 75 ~~~~~~viiiDei~~~~ 91 (148)
T smart00382 75 RKLKPDVLILDEITSLL 91 (148)
T ss_pred HhcCCCEEEEECCcccC
Confidence 443 4899999997543
No 163
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.77 E-value=3e-05 Score=77.32 Aligned_cols=87 Identities=24% Similarity=0.384 Sum_probs=64.6
Q ss_pred cccccceEEEccccccccccCCCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCccccCCCCCCee
Q 036236 448 KGWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVGMSKLGSLELL 527 (557)
Q Consensus 448 ~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~i~~L~~L~~L 527 (557)
..+.++.+|++++|.+..+|..+ .+|+.|.+++|..+..+|.. + ..+|++|++++|..+..+|++ |++|
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~LP--~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L 117 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPVLP--NELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLPES------VRSL 117 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCCCC--CCCcEEEccCCCCcccCCch-h--hhhhhheEccCcccccccccc------cceE
Confidence 34567889999999888887432 36999999987778778865 3 357999999998778888865 5556
Q ss_pred eccCCC---CcccChHHHhHh
Q 036236 528 DISHTF---IKELPEELKKLL 545 (557)
Q Consensus 528 ~l~~n~---l~~lP~~i~~L~ 545 (557)
+++++. +..||+++..|.
T Consensus 118 ~L~~n~~~~L~~LPssLk~L~ 138 (426)
T PRK15386 118 EIKGSATDSIKNVPNGLTSLS 138 (426)
T ss_pred EeCCCCCcccccCcchHhhee
Confidence 666653 677888887663
No 164
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.77 E-value=0.00092 Score=66.28 Aligned_cols=178 Identities=13% Similarity=0.048 Sum_probs=97.2
Q ss_pred HHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCC-----C
Q 036236 97 SQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGL-----F 171 (557)
Q Consensus 97 ~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-----~ 171 (557)
..-+++.+.+..+.-...+.+.|+.|+||+++|..++...--. ...+. ..++...-.+.+...-.. .
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~-~~~~~-------~~Cg~C~sC~~~~~g~HPD~~~i~ 80 (334)
T PRK07993 9 PDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQ-QPQGH-------KSCGHCRGCQLMQAGTHPDYYTLT 80 (334)
T ss_pred HHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCC-CCCCC-------CCCCCCHHHHHHHcCCCCCEEEEe
Confidence 3456677777744556788899999999999999987776210 00000 000000111111100000 0
Q ss_pred CCCC-CCCCHHHHHHHHHHHh-----cCCcEEEEEccCCCc--cccccccccCCCCCCCCcEEEEeeCChH-HH-hcccC
Q 036236 172 DDSW-KSKSVEEKAVDIFRSL-----REKRFVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTRSID-VC-GSMES 241 (557)
Q Consensus 172 ~~~~-~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~iliTtR~~~-v~-~~~~~ 241 (557)
.+.. ....+++.. .+.+.+ .+++=++|+|+++.. .....++..+..-..+ +.+|++|.+.. +. ...+-
T Consensus 81 p~~~~~~I~idqiR-~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~-t~fiL~t~~~~~lLpTIrSR 158 (334)
T PRK07993 81 PEKGKSSLGVDAVR-EVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPEN-TWFFLACREPARLLATLRSR 158 (334)
T ss_pred cccccccCCHHHHH-HHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCC-eEEEEEECChhhChHHHHhc
Confidence 0000 112223322 233322 345668999999643 2344455555443344 77777776644 33 22334
Q ss_pred CCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHH
Q 036236 242 HRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLAL 292 (557)
Q Consensus 242 ~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai 292 (557)
...+.+.+++.+++.+.+.+..+.. .+.+..++..++|.|...
T Consensus 159 Cq~~~~~~~~~~~~~~~L~~~~~~~--------~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 159 CRLHYLAPPPEQYALTWLSREVTMS--------QDALLAALRLSAGAPGAA 201 (334)
T ss_pred cccccCCCCCHHHHHHHHHHccCCC--------HHHHHHHHHHcCCCHHHH
Confidence 5578999999999998886543211 134668899999999644
No 165
>PRK08116 hypothetical protein; Validated
Probab=97.75 E-value=4.6e-05 Score=73.22 Aligned_cols=103 Identities=25% Similarity=0.250 Sum_probs=57.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 036236 112 VGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSL 191 (557)
Q Consensus 112 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 191 (557)
...+.|+|.+|+|||.||..+++.... ....+++++ ..+++..+....... ...+ ...+.+.+
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~---~~~~v~~~~------~~~ll~~i~~~~~~~----~~~~----~~~~~~~l 176 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIE---KGVPVIFVN------FPQLLNRIKSTYKSS----GKED----ENEIIRSL 176 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEEE------HHHHHHHHHHHHhcc----cccc----HHHHHHHh
Confidence 356899999999999999999999731 223455554 344555555443211 1111 22233444
Q ss_pred cCCcEEEEEccCCC--ccccc--cccccCCCCCCCCcEEEEeeCC
Q 036236 192 REKRFVLLLDDIWE--RVDLT--KVGVPLPGPQNTTSKVVFTTRS 232 (557)
Q Consensus 192 ~~k~~LlVlDdv~~--~~~~~--~l~~~l~~~~~~~s~iliTtR~ 232 (557)
.+-. ||||||+.. ..+|. .+...+...-..+..+||||..
T Consensus 177 ~~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 177 VNAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred cCCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 4444 899999942 22332 1222222111122568888875
No 166
>CHL00176 ftsH cell division protein; Validated
Probab=97.73 E-value=0.00073 Score=72.61 Aligned_cols=171 Identities=17% Similarity=0.211 Sum_probs=94.9
Q ss_pred CcccchhHHHHHHHHHH---hcc--------CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHH
Q 036236 90 PTIVGLQSQLEQVWRCL---VVE--------ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLE 158 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L---~~~--------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 158 (557)
..++|.++.++++.+.+ ... ...+-|.++|++|+|||+||+.++... ... |+.++..
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~---~~p-----~i~is~s---- 250 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---EVP-----FFSISGS---- 250 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC-----eeeccHH----
Confidence 45788887766665544 311 124569999999999999999998875 222 2222211
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCcc------------c----cccccccCCCC-CC
Q 036236 159 KIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWERV------------D----LTKVGVPLPGP-QN 221 (557)
Q Consensus 159 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~------------~----~~~l~~~l~~~-~~ 221 (557)
++.... .+ .........+.......+++|+|||++... . +..+...+... .+
T Consensus 251 ~f~~~~---~g--------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~ 319 (638)
T CHL00176 251 EFVEMF---VG--------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN 319 (638)
T ss_pred HHHHHh---hh--------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC
Confidence 111110 01 111222233344455688999999995321 0 11222222111 12
Q ss_pred CCcEEEEeeCChHHHhc-----ccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCC
Q 036236 222 TTSKVVFTTRSIDVCGS-----MESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDG 287 (557)
Q Consensus 222 ~~s~iliTtR~~~v~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G 287 (557)
.+..||.||........ ..-+..+.++..+.++-.++++.++....... ......+++.+.|
T Consensus 320 ~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~----d~~l~~lA~~t~G 386 (638)
T CHL00176 320 KGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSP----DVSLELIARRTPG 386 (638)
T ss_pred CCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccch----hHHHHHHHhcCCC
Confidence 22566667766443221 11245688888899999999988876532111 2345677778777
No 167
>PRK10536 hypothetical protein; Provisional
Probab=97.71 E-value=0.00088 Score=62.69 Aligned_cols=43 Identities=16% Similarity=0.157 Sum_probs=36.8
Q ss_pred cccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 91 TIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 91 ~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
.+.++......+..++. + ..+|.+.|++|+|||+||..+..+.
T Consensus 56 ~i~p~n~~Q~~~l~al~-~--~~lV~i~G~aGTGKT~La~a~a~~~ 98 (262)
T PRK10536 56 PILARNEAQAHYLKAIE-S--KQLIFATGEAGCGKTWISAAKAAEA 98 (262)
T ss_pred cccCCCHHHHHHHHHHh-c--CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 46788899999999887 3 4599999999999999999988863
No 168
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.00067 Score=69.59 Aligned_cols=171 Identities=18% Similarity=0.222 Sum_probs=93.4
Q ss_pred cccchhHHHHHHHHHHhc--c---------CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHH
Q 036236 91 TIVGLQSQLEQVWRCLVV--E---------ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEK 159 (557)
Q Consensus 91 ~~vGr~~~~~~l~~~L~~--~---------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~ 159 (557)
.+=|.+..+.++.+.+.. . ...+-|.++|++|+|||.||++++++. .-.| +.++.+
T Consensus 191 diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel---~vPf-----~~isAp----- 257 (802)
T KOG0733|consen 191 DIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL---GVPF-----LSISAP----- 257 (802)
T ss_pred hccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc---CCce-----Eeecch-----
Confidence 456889999998887752 1 256778999999999999999999997 2222 333322
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCc---c-----c-----cccccccCC---CC-CCC
Q 036236 160 IQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWER---V-----D-----LTKVGVPLP---GP-QNT 222 (557)
Q Consensus 160 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---~-----~-----~~~l~~~l~---~~-~~~ 222 (557)
+|.... ...+.+.+.+.+.+.-..-++++++|+++-- . + ..++...+. .. ..|
T Consensus 258 ---eivSGv-------SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g 327 (802)
T KOG0733|consen 258 ---EIVSGV-------SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKG 327 (802)
T ss_pred ---hhhccc-------CcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCC
Confidence 122211 2223333333344445568999999998631 0 0 112222211 11 112
Q ss_pred CcEEEE--eeCChHH---Hhcc-cCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCC
Q 036236 223 TSKVVF--TTRSIDV---CGSM-ESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGL 288 (557)
Q Consensus 223 ~s~ili--TtR~~~v---~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 288 (557)
...++| |+|-..+ ++.. .-++.|.|.--++.+-.+++...+........-++ ++|++.+-|.
T Consensus 328 ~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~----~qlA~lTPGf 395 (802)
T KOG0733|consen 328 DPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDF----KQLAKLTPGF 395 (802)
T ss_pred CCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCH----HHHHhcCCCc
Confidence 233333 4443332 1221 23456788877777777777666543333333333 3455555443
No 169
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.70 E-value=0.00042 Score=61.22 Aligned_cols=138 Identities=17% Similarity=0.146 Sum_probs=71.7
Q ss_pred chhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCC-----------------cceEEEEEeCCc--
Q 036236 94 GLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPIN-----------------FDCVIWVVVSKD-- 154 (557)
Q Consensus 94 Gr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~-----------------f~~~~wv~~~~~-- 154 (557)
|.++..+.|.+.+..+.-...+.++|+.|+||+++|..+++..--.... ..-..|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 5677788888888844456678999999999999999998876211111 112223322211
Q ss_pred -cCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCc--cccccccccCCCCCCCCcEEEEeeC
Q 036236 155 -LRLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTR 231 (557)
Q Consensus 155 -~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~iliTtR 231 (557)
....++. ++...+.... ..++.=++|+||++.. .....++..+...... +.+|++|+
T Consensus 81 ~i~i~~ir-~i~~~~~~~~------------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~-~~fiL~t~ 140 (162)
T PF13177_consen 81 SIKIDQIR-EIIEFLSLSP------------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPEN-TYFILITN 140 (162)
T ss_dssp SBSHHHHH-HHHHHCTSS-------------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTT-EEEEEEES
T ss_pred hhhHHHHH-HHHHHHHHHH------------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCC-EEEEEEEC
Confidence 1222221 2222222111 1235568999999753 3344454444443344 88888888
Q ss_pred ChHH--HhcccCCCceecCCCC
Q 036236 232 SIDV--CGSMESHRKFPVACLS 251 (557)
Q Consensus 232 ~~~v--~~~~~~~~~~~l~~L~ 251 (557)
+..- ....+-...+.+.+++
T Consensus 141 ~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 141 NPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp -GGGS-HHHHTTSEEEEE----
T ss_pred ChHHChHHHHhhceEEecCCCC
Confidence 7552 2222333455666553
No 170
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.00067 Score=71.12 Aligned_cols=158 Identities=20% Similarity=0.229 Sum_probs=90.8
Q ss_pred CcccchhHHHHHHHHHHhc-----cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHH
Q 036236 90 PTIVGLQSQLEQVWRCLVV-----EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDI 164 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~-----~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 164 (557)
..-+|.++.+++|+++|.- .-+..+++++|++|||||+|++.+++.. ...| +-+++++-.+..++-.
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al---~Rkf---vR~sLGGvrDEAEIRG-- 394 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL---GRKF---VRISLGGVRDEAEIRG-- 394 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh---CCCE---EEEecCccccHHHhcc--
Confidence 3459999999999999862 2356899999999999999999999987 3344 2234444433333211
Q ss_pred HHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCccc------cccccccCCC-------------CCCCCcE
Q 036236 165 GKKIGLFDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWERVD------LTKVGVPLPG-------------PQNTTSK 225 (557)
Q Consensus 165 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~~~l~~-------------~~~~~s~ 225 (557)
........-+......+.+ .+.++-+++||.++.... ...++..|.. .-.= |.
T Consensus 395 ------HRRTYIGamPGrIiQ~mkk-a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDL-S~ 466 (782)
T COG0466 395 ------HRRTYIGAMPGKIIQGMKK-AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDL-SK 466 (782)
T ss_pred ------ccccccccCChHHHHHHHH-hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccch-hh
Confidence 1111111122233333333 244677899999863210 0011111100 0011 33
Q ss_pred -EEEeeCCh-H-H-HhcccCCCceecCCCCHHHHHHHHHHHh
Q 036236 226 -VVFTTRSI-D-V-CGSMESHRKFPVACLSEEDAWELFREKV 263 (557)
Q Consensus 226 -iliTtR~~-~-v-~~~~~~~~~~~l~~L~~~ea~~L~~~~~ 263 (557)
+.|||-|. . + ...++....+++.+.+++|-.++-++++
T Consensus 467 VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 467 VMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred eEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 34555442 1 1 2223445689999999999998888775
No 171
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.69 E-value=0.00026 Score=69.86 Aligned_cols=104 Identities=14% Similarity=0.117 Sum_probs=66.6
Q ss_pred HHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcce-EEEEEeCCc-cCHHHHHHHHHHHhCCCCCCCC
Q 036236 99 LEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDC-VIWVVVSKD-LRLEKIQEDIGKKIGLFDDSWK 176 (557)
Q Consensus 99 ~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~-~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~ 176 (557)
..++++.+..-+...-+.|+|.+|+|||||++.+++... ..+-+. ++|+.+.+. ..+.++.+.+...+.....+..
T Consensus 120 ~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~--~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~ 197 (380)
T PRK12608 120 SMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVA--ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRP 197 (380)
T ss_pred hHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHH--hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCC
Confidence 345777776435667789999999999999999998872 223344 467666654 4678888888877664331111
Q ss_pred CC---CHHHHHHHHHHHh--cCCcEEEEEccCC
Q 036236 177 SK---SVEEKAVDIFRSL--REKRFVLLLDDIW 204 (557)
Q Consensus 177 ~~---~~~~~~~~l~~~l--~~k~~LlVlDdv~ 204 (557)
.. ........+.+++ ++++++||+|++.
T Consensus 198 ~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 198 PDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 11 1111222222333 5799999999983
No 172
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.69 E-value=0.0015 Score=68.38 Aligned_cols=200 Identities=15% Similarity=0.091 Sum_probs=119.6
Q ss_pred CcccchhHHHHHHHHHHhc---c-CCeeEEEEEcCCCCcHHHHHHHHHhhccc--CC---CCcceEEEEEeCCccCHHHH
Q 036236 90 PTIVGLQSQLEQVWRCLVV---E-ESVGIIGLYGMGGVGKTTLLTHINNKFLE--NP---INFDCVIWVVVSKDLRLEKI 160 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~---~-~~~~vv~I~G~~GiGKTtLa~~v~~~~~~--~~---~~f~~~~wv~~~~~~~~~~~ 160 (557)
..+-+|+.+..+|.+.+.. + +....+-|.|-+|+|||..+..|.+.+.. .+ ..|+ .+.|..-.-..+.++
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~ 474 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREI 474 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHH
Confidence 3456899999999998874 3 45568999999999999999999986521 11 2232 334444445678999
Q ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc-----CCcEEEEEccCCCccc--cccccccCCCCCCCCcEEEEeeCCh
Q 036236 161 QEDIGKKIGLFDDSWKSKSVEEKAVDIFRSLR-----EKRFVLLLDDIWERVD--LTKVGVPLPGPQNTTSKVVFTTRSI 233 (557)
Q Consensus 161 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~~~--~~~l~~~l~~~~~~~s~iliTtR~~ 233 (557)
+..|..++.... .......+.+..++. .+.+++++|+++.... -+-+...|.+....+|+++|-+=..
T Consensus 475 Y~~I~~~lsg~~-----~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaN 549 (767)
T KOG1514|consen 475 YEKIWEALSGER-----VTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIAN 549 (767)
T ss_pred HHHHHHhcccCc-----ccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecc
Confidence 999999987532 334445555555543 4678999999853211 1111122333233336666543211
Q ss_pred --H---------HHhcccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHHH
Q 036236 234 --D---------VCGSMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTIG 296 (557)
Q Consensus 234 --~---------v~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~ 296 (557)
. ++..+ ....+.+.|.+.++-.++...++.....-.....+=++++++.-.|..-.|+...-
T Consensus 550 TmdlPEr~l~nrvsSRl-g~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~ 622 (767)
T KOG1514|consen 550 TMDLPERLLMNRVSSRL-GLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICR 622 (767)
T ss_pred cccCHHHHhccchhhhc-cceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHH
Confidence 1 11111 23467788888888888887776544322223333345555555555555554443
No 173
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.68 E-value=4.9e-06 Score=86.17 Aligned_cols=102 Identities=25% Similarity=0.275 Sum_probs=78.6
Q ss_pred cccceEEEccccccccccCCCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCccccCCCCCCeeec
Q 036236 450 WENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVGMSKLGSLELLDI 529 (557)
Q Consensus 450 ~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~i~~L~~L~~L~l 529 (557)
++.+++|+|++|++........|++|..|||++|. +..+|.--...+ +|..|.|+|| .++.|- .|.+|++|+.||+
T Consensus 186 l~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc-~L~~L~lrnN-~l~tL~-gie~LksL~~LDl 261 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNC-LRHVPQLSMVGC-KLQLLNLRNN-ALTTLR-GIENLKSLYGLDL 261 (1096)
T ss_pred HHHhhhhccchhhhhhhHHHHhcccccccccccch-hccccccchhhh-hheeeeeccc-HHHhhh-hHHhhhhhhccch
Confidence 34688899999999888777889999999999998 888886323334 4999999999 788774 8899999999999
Q ss_pred cCCCCcccC--hHHHhHhhhhhcCCCCC
Q 036236 530 SHTFIKELP--EELKKLLEAIQRAPRPD 555 (557)
Q Consensus 530 ~~n~l~~lP--~~i~~L~~L~~L~~~~~ 555 (557)
++|-|.+.. .-++.|..|+.|.+-||
T Consensus 262 syNll~~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 262 SYNLLSEHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred hHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence 999776432 23667777775554443
No 174
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.68 E-value=1.9e-05 Score=78.61 Aligned_cols=103 Identities=21% Similarity=0.307 Sum_probs=74.2
Q ss_pred ccceEEEcccccccc-----cc-CCCCCCCccEEEcccccccc-----cccchHhhcCCCCcEEEeecCCCCc-----cC
Q 036236 451 ENVRRLSLMQNQIET-----LS-EVPTCPHLLTLFLDFNQELE-----MIADGFFQFMPSLKVLKISNCGNIF-----QL 514 (557)
Q Consensus 451 ~~l~~l~l~~~~~~~-----~~-~~~~~~~L~~L~l~~~~~~~-----~~p~~~~~~l~~L~~L~Ls~~~~~~-----~l 514 (557)
++++.|++++|.+.. ++ ....+++|+.|++++|. +. .++.. +..+++|++|+|++| .++ .+
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~-l~~~~~L~~L~L~~n-~i~~~~~~~l 213 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG-IGDAGIRALAEG-LKANCNLEVLDLNNN-GLTDEGASAL 213 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC-CchHHHHHHHHH-HHhCCCCCEEeccCC-ccChHHHHHH
Confidence 688999999998762 11 12567789999999987 43 23333 455679999999999 664 35
Q ss_pred CccccCCCCCCeeeccCCCCccc-ChHHHh-----HhhhhhcCCCCCC
Q 036236 515 PVGMSKLGSLELLDISHTFIKEL-PEELKK-----LLEAIQRAPRPDR 556 (557)
Q Consensus 515 P~~i~~L~~L~~L~l~~n~l~~l-P~~i~~-----L~~L~~L~~~~~~ 556 (557)
+..+..+++|++|++++|.++.. +..+.. .++|++|+++++.
T Consensus 214 ~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 214 AETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred HHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 56778889999999999988752 233332 2688888887764
No 175
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.65 E-value=0.00089 Score=68.21 Aligned_cols=135 Identities=20% Similarity=0.164 Sum_probs=83.3
Q ss_pred hhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccC-HHHHHHHHHHHhCCCCC
Q 036236 95 LQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLR-LEKIQEDIGKKIGLFDD 173 (557)
Q Consensus 95 r~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~ 173 (557)
|..-..++.+.+. .... ++.|.|+-++||||+++.+..... .. .+++....... -..+ .
T Consensus 22 ~~~~~~~l~~~~~-~~~~-i~~i~GpR~~GKTtll~~l~~~~~---~~---~iy~~~~d~~~~~~~l-~----------- 81 (398)
T COG1373 22 RRKLLPRLIKKLD-LRPF-IILILGPRQVGKTTLLKLLIKGLL---EE---IIYINFDDLRLDRIEL-L----------- 81 (398)
T ss_pred HHhhhHHHHhhcc-cCCc-EEEEECCccccHHHHHHHHHhhCC---cc---eEEEEecchhcchhhH-H-----------
Confidence 3444555555554 2222 999999999999999987777652 11 44444332211 1111 1
Q ss_pred CCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCccccccccccCCCCCCCCcEEEEeeCChHHHh-----cc-cCCCceec
Q 036236 174 SWKSKSVEEKAVDIFRSLREKRFVLLLDDIWERVDLTKVGVPLPGPQNTTSKVVFTTRSIDVCG-----SM-ESHRKFPV 247 (557)
Q Consensus 174 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~s~iliTtR~~~v~~-----~~-~~~~~~~l 247 (557)
+....+.+.-..++.+++||.|....+|......+.+.+.. +|++|+-+..... .+ +-...+++
T Consensus 82 --------d~~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~--~v~itgsss~ll~~~~~~~L~GR~~~~~l 151 (398)
T COG1373 82 --------DLLRAYIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL--DVLITGSSSSLLSKEISESLAGRGKDLEL 151 (398)
T ss_pred --------HHHHHHHHhhccCCceEEEecccCchhHHHHHHHHHccccc--eEEEECCchhhhccchhhhcCCCceeEEE
Confidence 11111111112277899999999999998887777765443 6888887755422 11 33557899
Q ss_pred CCCCHHHHHHHH
Q 036236 248 ACLSEEDAWELF 259 (557)
Q Consensus 248 ~~L~~~ea~~L~ 259 (557)
.||+..|-..+.
T Consensus 152 ~PlSF~Efl~~~ 163 (398)
T COG1373 152 YPLSFREFLKLK 163 (398)
T ss_pred CCCCHHHHHhhc
Confidence 999999876653
No 176
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.62 E-value=0.0028 Score=62.08 Aligned_cols=177 Identities=14% Similarity=0.064 Sum_probs=96.4
Q ss_pred HHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCC-----C
Q 036236 97 SQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGL-----F 171 (557)
Q Consensus 97 ~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-----~ 171 (557)
...+.+.+.+..+.-...+.++|+.|+||+++|..++...-- ....+ ..++.....+.+...-.. .
T Consensus 10 ~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC-~~~~~--------~~Cg~C~sC~~~~~g~HPD~~~i~ 80 (319)
T PRK06090 10 PVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLC-QNYQS--------EACGFCHSCELMQSGNHPDLHVIK 80 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcC-CCCCC--------CCCCCCHHHHHHHcCCCCCEEEEe
Confidence 345566666663445678899999999999999998776521 10000 000001111111110000 0
Q ss_pred CC-CCCCCCHHHHHHHHHHHh-----cCCcEEEEEccCCCc--cccccccccCCCCCCCCcEEEEeeCChH-H-HhcccC
Q 036236 172 DD-SWKSKSVEEKAVDIFRSL-----REKRFVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTRSID-V-CGSMES 241 (557)
Q Consensus 172 ~~-~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~iliTtR~~~-v-~~~~~~ 241 (557)
.+ ......+++.. .+.+.+ .++.=++|+|+++.. .....++..+..-..+ +.+|++|.+.. + ....+-
T Consensus 81 p~~~~~~I~vdqiR-~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~-t~fiL~t~~~~~lLpTI~SR 158 (319)
T PRK06090 81 PEKEGKSITVEQIR-QCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPN-CLFLLVTHNQKRLLPTIVSR 158 (319)
T ss_pred cCcCCCcCCHHHHH-HHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCC-eEEEEEECChhhChHHHHhc
Confidence 00 00112223322 233332 234558899999643 2344455555443344 66776666543 3 233344
Q ss_pred CCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHH
Q 036236 242 HRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTI 295 (557)
Q Consensus 242 ~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 295 (557)
...+.+.+++.+++.+.+... +. . ....++..++|.|+....+
T Consensus 159 Cq~~~~~~~~~~~~~~~L~~~-~~---~-------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 159 CQQWVVTPPSTAQAMQWLKGQ-GI---T-------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred ceeEeCCCCCHHHHHHHHHHc-CC---c-------hHHHHHHHcCCCHHHHHHH
Confidence 567899999999999988653 11 1 1346788999999876544
No 177
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.61 E-value=0.00035 Score=72.06 Aligned_cols=188 Identities=15% Similarity=0.163 Sum_probs=112.3
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhC
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIG 169 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 169 (557)
+.+||.+.....|...+..+.-.......|+-|+||||+|+-++.... ...- ....++......+.|...-.
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalN--C~~~------~~~ePC~~C~~Ck~I~~g~~ 87 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALN--CENG------PTAEPCGKCISCKEINEGSL 87 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhc--CCCC------CCCCcchhhhhhHhhhcCCc
Confidence 467999999999999998444456678899999999999999988762 1110 11122222233333332200
Q ss_pred CCC---CCCCCCCHHHHHHHHHHHh-----cCCcEEEEEccCC--CccccccccccCCCCCCCCcEEEEeeCChH-H-Hh
Q 036236 170 LFD---DSWKSKSVEEKAVDIFRSL-----REKRFVLLLDDIW--ERVDLTKVGVPLPGPQNTTSKVVFTTRSID-V-CG 237 (557)
Q Consensus 170 ~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~--~~~~~~~l~~~l~~~~~~~s~iliTtR~~~-v-~~ 237 (557)
.+. +..+...+++. +.|.+.. +++.=+.|+|+|. +...+..++..+.....+ ...|+.|.+.. + ..
T Consensus 88 ~DviEiDaASn~gVddi-R~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~h-V~FIlATTe~~Kip~T 165 (515)
T COG2812 88 IDVIEIDAASNTGVDDI-REIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSH-VKFILATTEPQKIPNT 165 (515)
T ss_pred ccchhhhhhhccChHHH-HHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccC-eEEEEecCCcCcCchh
Confidence 000 00011122222 2222222 3455589999995 344566666666554444 66666555533 3 33
Q ss_pred cccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCch
Q 036236 238 SMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPL 290 (557)
Q Consensus 238 ~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 290 (557)
..+....|.+..++.++-...+...+.......+ .+....|++..+|..-
T Consensus 166 IlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e---~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 166 ILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE---EDALSLIARAAEGSLR 215 (515)
T ss_pred hhhccccccccCCCHHHHHHHHHHHHHhcCCccC---HHHHHHHHHHcCCChh
Confidence 3445678999999999999999988876654333 2456677777777543
No 178
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.60 E-value=0.00013 Score=62.05 Aligned_cols=22 Identities=41% Similarity=0.460 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 036236 115 IGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 115 v~I~G~~GiGKTtLa~~v~~~~ 136 (557)
|.|+|++|+|||++|+.+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5799999999999999999997
No 179
>PRK12377 putative replication protein; Provisional
Probab=97.59 E-value=0.00038 Score=65.65 Aligned_cols=74 Identities=27% Similarity=0.310 Sum_probs=45.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRS 190 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 190 (557)
....+.|+|++|+|||+||..+++... ...-.++++++. +++..+-..... ..... .+.+.
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~---~~g~~v~~i~~~------~l~~~l~~~~~~------~~~~~----~~l~~ 160 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLL---AKGRSVIVVTVP------DVMSRLHESYDN------GQSGE----KFLQE 160 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEEEHH------HHHHHHHHHHhc------cchHH----HHHHH
Confidence 346899999999999999999999973 222335565443 445544443311 11111 22222
Q ss_pred hcCCcEEEEEccCC
Q 036236 191 LREKRFVLLLDDIW 204 (557)
Q Consensus 191 l~~k~~LlVlDdv~ 204 (557)
+ .+.-||||||+.
T Consensus 161 l-~~~dLLiIDDlg 173 (248)
T PRK12377 161 L-CKVDLLVLDEIG 173 (248)
T ss_pred h-cCCCEEEEcCCC
Confidence 3 345699999994
No 180
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.59 E-value=7.2e-06 Score=85.01 Aligned_cols=101 Identities=21% Similarity=0.309 Sum_probs=82.4
Q ss_pred ccccceEEEccccccccccCC-CCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCc-cccCCCCCCe
Q 036236 449 GWENVRRLSLMQNQIETLSEV-PTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPV-GMSKLGSLEL 526 (557)
Q Consensus 449 ~~~~l~~l~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~-~i~~L~~L~~ 526 (557)
.|.+|...+++.|.+..+... .-++.|+.|+|++|+ +.+.. ++..+++|+.|||++| .+..+|. +...+. |+.
T Consensus 162 ~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk-~~~v~--~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~ 236 (1096)
T KOG1859|consen 162 VWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNK-FTKVD--NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQL 236 (1096)
T ss_pred hhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhh-hhhhH--HHHhcccccccccccc-hhccccccchhhhh-hee
Confidence 466788889999988766544 456889999999998 55555 4888999999999999 8999986 344444 999
Q ss_pred eeccCCCCcccChHHHhHhhhhhcCCCCC
Q 036236 527 LDISHTFIKELPEELKKLLEAIQRAPRPD 555 (557)
Q Consensus 527 L~l~~n~l~~lP~~i~~L~~L~~L~~~~~ 555 (557)
|+|++|.++.| .+|.+|++|+.||++-|
T Consensus 237 L~lrnN~l~tL-~gie~LksL~~LDlsyN 264 (1096)
T KOG1859|consen 237 LNLRNNALTTL-RGIENLKSLYGLDLSYN 264 (1096)
T ss_pred eeecccHHHhh-hhHHhhhhhhccchhHh
Confidence 99999999987 47899999999998743
No 181
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.58 E-value=0.0016 Score=62.63 Aligned_cols=54 Identities=28% Similarity=0.272 Sum_probs=35.1
Q ss_pred HHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHH
Q 036236 98 QLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKI 160 (557)
Q Consensus 98 ~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 160 (557)
-++++..++. ....|.|.|++|+|||++|+.++... .. ..+.+++.......++
T Consensus 10 l~~~~l~~l~---~g~~vLL~G~~GtGKT~lA~~la~~l---g~---~~~~i~~~~~~~~~dl 63 (262)
T TIGR02640 10 VTSRALRYLK---SGYPVHLRGPAGTGKTTLAMHVARKR---DR---PVMLINGDAELTTSDL 63 (262)
T ss_pred HHHHHHHHHh---cCCeEEEEcCCCCCHHHHHHHHHHHh---CC---CEEEEeCCccCCHHHH
Confidence 3455555555 34567799999999999999998754 22 2345555554444444
No 182
>PRK08118 topology modulation protein; Reviewed
Probab=97.57 E-value=4.6e-05 Score=67.71 Aligned_cols=36 Identities=33% Similarity=0.544 Sum_probs=29.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEE
Q 036236 113 GIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIW 148 (557)
Q Consensus 113 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~w 148 (557)
+.|.|+|++|+||||||+.+++.......+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358999999999999999999997322356777776
No 183
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.57 E-value=0.00051 Score=75.99 Aligned_cols=47 Identities=23% Similarity=0.387 Sum_probs=37.9
Q ss_pred CcccchhHHHHHHHHHHhc------cC--CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 90 PTIVGLQSQLEQVWRCLVV------EE--SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~------~~--~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..++|.+..++.+.+.+.. ++ ...++.++|++|+|||+||+.+++..
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh
Confidence 4578999999998888762 11 23468899999999999999999876
No 184
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.56 E-value=2.6e-05 Score=77.55 Aligned_cols=103 Identities=26% Similarity=0.319 Sum_probs=77.6
Q ss_pred ccceEEEcccccccc-----cc-CCCCC-CCccEEEcccccccc-----cccchHhhcCCCCcEEEeecCCCCc-----c
Q 036236 451 ENVRRLSLMQNQIET-----LS-EVPTC-PHLLTLFLDFNQELE-----MIADGFFQFMPSLKVLKISNCGNIF-----Q 513 (557)
Q Consensus 451 ~~l~~l~l~~~~~~~-----~~-~~~~~-~~L~~L~l~~~~~~~-----~~p~~~~~~l~~L~~L~Ls~~~~~~-----~ 513 (557)
+++++|++++|.+.. +. ....+ ++|+.|++++|. +. .++.. +..+++|++|+|++| .++ .
T Consensus 108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~-~~~~~~L~~L~l~~n-~l~~~~~~~ 184 (319)
T cd00116 108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKA-LRANRDLKELNLANN-GIGDAGIRA 184 (319)
T ss_pred CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHH-HHhCCCcCEEECcCC-CCchHHHHH
Confidence 449999999988762 11 12455 899999999998 43 23333 667789999999999 666 3
Q ss_pred CCccccCCCCCCeeeccCCCCc-----ccChHHHhHhhhhhcCCCCCC
Q 036236 514 LPVGMSKLGSLELLDISHTFIK-----ELPEELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 514 lP~~i~~L~~L~~L~l~~n~l~-----~lP~~i~~L~~L~~L~~~~~~ 556 (557)
++..+..+++|++|+|++|.++ .++..+.++++|++|++++++
T Consensus 185 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 185 LAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred HHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence 5566777789999999999886 345566778889999998864
No 185
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.56 E-value=0.00074 Score=74.90 Aligned_cols=172 Identities=17% Similarity=0.201 Sum_probs=91.8
Q ss_pred cccchhHHHHHHHHHHhc---c---------CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHH
Q 036236 91 TIVGLQSQLEQVWRCLVV---E---------ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLE 158 (557)
Q Consensus 91 ~~vGr~~~~~~l~~~L~~---~---------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 158 (557)
.+.|.+..+++|.+.+.. . ...+.|.++|++|+|||+||+.+++.. ...| +.++..
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~---~~~~-----i~i~~~---- 246 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA---GAYF-----ISINGP---- 246 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh---CCeE-----EEEecH----
Confidence 478999999998877641 0 234678999999999999999999886 2222 222211
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCccc-------------cccccccCCCCCCCCcE
Q 036236 159 KIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWERVD-------------LTKVGVPLPGPQNTTSK 225 (557)
Q Consensus 159 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~l~~~l~~~~~~~s~ 225 (557)
.+... . ...........+.......+.+|+||+++.... ...+...+......+..
T Consensus 247 ~i~~~----~-------~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~v 315 (733)
T TIGR01243 247 EIMSK----Y-------YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRV 315 (733)
T ss_pred HHhcc----c-------ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCE
Confidence 11100 0 011112222223333445678999999853210 11122222221122133
Q ss_pred EEE-eeCChHHH-hcc----cCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCc
Q 036236 226 VVF-TTRSIDVC-GSM----ESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLP 289 (557)
Q Consensus 226 ili-TtR~~~v~-~~~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 289 (557)
++| ||....-. ..+ .-...+.+...+.++-.+++...........+. ....+++.+.|.-
T Consensus 316 ivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~----~l~~la~~t~G~~ 381 (733)
T TIGR01243 316 IVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDV----DLDKLAEVTHGFV 381 (733)
T ss_pred EEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcccc----CHHHHHHhCCCCC
Confidence 444 55443211 111 123457788888888888888665433211111 2456777777764
No 186
>PRK07261 topology modulation protein; Provisional
Probab=97.56 E-value=0.00024 Score=63.42 Aligned_cols=66 Identities=20% Similarity=0.407 Sum_probs=42.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcC
Q 036236 114 IIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSLRE 193 (557)
Q Consensus 114 vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 193 (557)
.|.|+|++|+||||||+.+........-+.|...|-.. +...+.++....+.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~ 58 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN-----------------------WQERDDDDMIADISNFLLK 58 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc-----------------------cccCCHHHHHHHHHHHHhC
Confidence 48999999999999999998775211224455555211 1222344555666666666
Q ss_pred CcEEEEEccCC
Q 036236 194 KRFVLLLDDIW 204 (557)
Q Consensus 194 k~~LlVlDdv~ 204 (557)
.+ .|+|+..
T Consensus 59 ~~--wIidg~~ 67 (171)
T PRK07261 59 HD--WIIDGNY 67 (171)
T ss_pred CC--EEEcCcc
Confidence 66 6778863
No 187
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.50 E-value=9.3e-05 Score=68.15 Aligned_cols=103 Identities=23% Similarity=0.214 Sum_probs=78.2
Q ss_pred cccceEEEccccccccccCCCCCCCccEEEccccc--ccccccchHhhcCCCCcEEEeecCCCCccCC--ccccCCCCCC
Q 036236 450 WENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNQ--ELEMIADGFFQFMPSLKVLKISNCGNIFQLP--VGMSKLGSLE 525 (557)
Q Consensus 450 ~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP--~~i~~L~~L~ 525 (557)
+..+..+++.+..+..+...+.+++|+.|.++.|. ....++.. ..++++|++|+||+| +|..+- ....+|.+|.
T Consensus 42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGN-KIKDLSTLRPLKELENLK 119 (260)
T ss_pred ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCC-ccccccccchhhhhcchh
Confidence 45677888888888888888899999999999994 33444444 566799999999999 776421 1456778899
Q ss_pred eeeccCCCCcccC--h--HHHhHhhhhhcCCCC
Q 036236 526 LLDISHTFIKELP--E--ELKKLLEAIQRAPRP 554 (557)
Q Consensus 526 ~L~l~~n~l~~lP--~--~i~~L~~L~~L~~~~ 554 (557)
.|++.+|....+- . -+.-|++|++|++-.
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 9999999877663 2 256788999988754
No 188
>PRK08181 transposase; Validated
Probab=97.48 E-value=0.00031 Score=67.19 Aligned_cols=105 Identities=17% Similarity=0.138 Sum_probs=56.8
Q ss_pred HHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCCCCCCCHHHH
Q 036236 104 RCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDSWKSKSVEEK 183 (557)
Q Consensus 104 ~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 183 (557)
+|+. ....+.|+|++|+|||.||..+.+... .....++|++ ..+++..+..... .......
T Consensus 101 ~~~~---~~~nlll~Gp~GtGKTHLa~Aia~~a~---~~g~~v~f~~------~~~L~~~l~~a~~-------~~~~~~~ 161 (269)
T PRK08181 101 SWLA---KGANLLLFGPPGGGKSHLAAAIGLALI---ENGWRVLFTR------TTDLVQKLQVARR-------ELQLESA 161 (269)
T ss_pred HHHh---cCceEEEEecCCCcHHHHHHHHHHHHH---HcCCceeeee------HHHHHHHHHHHHh-------CCcHHHH
Confidence 4554 445699999999999999999998762 1223345553 3455555543321 1122222
Q ss_pred HHHHHHHhcCCcEEEEEccCCCc--ccc--ccccccCCCCCCCCcEEEEeeCCh
Q 036236 184 AVDIFRSLREKRFVLLLDDIWER--VDL--TKVGVPLPGPQNTTSKVVFTTRSI 233 (557)
Q Consensus 184 ~~~l~~~l~~k~~LlVlDdv~~~--~~~--~~l~~~l~~~~~~~s~iliTtR~~ 233 (557)
.+.+. +.=||||||+... ..+ ..+...+...... ..+||||..+
T Consensus 162 ----l~~l~-~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~-~s~IiTSN~~ 209 (269)
T PRK08181 162 ----IAKLD-KFDLLILDDLAYVTKDQAETSVLFELISARYER-RSILITANQP 209 (269)
T ss_pred ----HHHHh-cCCEEEEeccccccCCHHHHHHHHHHHHHHHhC-CCEEEEcCCC
Confidence 22222 3459999999532 111 1122222222222 3588888753
No 189
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.47 E-value=0.0004 Score=64.63 Aligned_cols=38 Identities=24% Similarity=0.319 Sum_probs=30.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEe
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVV 151 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 151 (557)
..-.++|+|..|+|||||+..+.... ...|..+++++-
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~~---~~~f~~I~l~t~ 49 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYYL---RHKFDHIFLITP 49 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhh---cccCCEEEEEec
Confidence 34467899999999999999998887 567877777654
No 190
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.46 E-value=4.1e-05 Score=82.85 Aligned_cols=101 Identities=20% Similarity=0.208 Sum_probs=56.6
Q ss_pred cccceEEEcccccccc--ccCC-CCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCc--cccCCCCC
Q 036236 450 WENVRRLSLMQNQIET--LSEV-PTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPV--GMSKLGSL 524 (557)
Q Consensus 450 ~~~l~~l~l~~~~~~~--~~~~-~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~--~i~~L~~L 524 (557)
++.|++|.+.+-.+.. +... .++++|+.||+++.+ +..+ .+ ++.+++|++|.+.+- .+..-+. .+.+|++|
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~G-IS~LknLq~L~mrnL-e~e~~~~l~~LF~L~~L 222 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SG-ISRLKNLQVLSMRNL-EFESYQDLIDLFNLKKL 222 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HH-HhccccHHHHhccCC-CCCchhhHHHHhcccCC
Confidence 4566666666644432 1111 566777777777666 5555 22 666777777766554 4433222 45667777
Q ss_pred CeeeccCCCCcccChH-------HHhHhhhhhcCCCC
Q 036236 525 ELLDISHTFIKELPEE-------LKKLLEAIQRAPRP 554 (557)
Q Consensus 525 ~~L~l~~n~l~~lP~~-------i~~L~~L~~L~~~~ 554 (557)
+.||+|......-|.- -..|++|++||-++
T Consensus 223 ~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 223 RVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred CeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 7777776644333311 11366777776664
No 191
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.46 E-value=0.0016 Score=72.60 Aligned_cols=47 Identities=32% Similarity=0.383 Sum_probs=38.6
Q ss_pred CcccchhHHHHHHHHHHhc-----cCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 90 PTIVGLQSQLEQVWRCLVV-----EESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~-----~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..++|.++.++.|.+++.. .....++.++|++|+|||++|+.+++..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3478999999998887642 2245689999999999999999999987
No 192
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.45 E-value=0.0014 Score=62.72 Aligned_cols=172 Identities=17% Similarity=0.170 Sum_probs=101.7
Q ss_pred CcccchhHHHHHHHHHHhc---cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCH-HHHHHHHH
Q 036236 90 PTIVGLQSQLEQVWRCLVV---EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRL-EKIQEDIG 165 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~---~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~-~~~~~~i~ 165 (557)
..++|-.++..++-.++.+ .+....|.|+|+.|.|||+|......+. +..-+..+-|...+.... .-.++.|.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~---q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDI---QENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhH---HhcCCeEEEEEECccchhhHHHHHHHH
Confidence 4689999999999988874 3667788999999999999998887774 223333445555544322 22445555
Q ss_pred HHhCCCCC--CCCCCCHHHHHHHHHHHhcC------CcEEEEEccCCCccc------cccccccCCCCCCCCcEEEEeeC
Q 036236 166 KKIGLFDD--SWKSKSVEEKAVDIFRSLRE------KRFVLLLDDIWERVD------LTKVGVPLPGPQNTTSKVVFTTR 231 (557)
Q Consensus 166 ~~l~~~~~--~~~~~~~~~~~~~l~~~l~~------k~~LlVlDdv~~~~~------~~~l~~~l~~~~~~~s~iliTtR 231 (557)
+++..... .-...+..+..+.+...|+. -++++|+|.++--.. +-.+...-.....+-+.|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 55432111 11233445555666666643 468999998853211 11111111111223155668888
Q ss_pred ChH-------HHhcccCCCceecCCCCHHHHHHHHHHHhC
Q 036236 232 SID-------VCGSMESHRKFPVACLSEEDAWELFREKVG 264 (557)
Q Consensus 232 ~~~-------v~~~~~~~~~~~l~~L~~~ea~~L~~~~~~ 264 (557)
-.. |-+.+.....+-+++++-++-..++++...
T Consensus 181 ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 642 233333334566778888888888888763
No 193
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.00099 Score=69.64 Aligned_cols=157 Identities=15% Similarity=0.133 Sum_probs=89.0
Q ss_pred cccchhHHHHHHHHHHhc-----cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHH
Q 036236 91 TIVGLQSQLEQVWRCLVV-----EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIG 165 (557)
Q Consensus 91 ~~vGr~~~~~~l~~~L~~-----~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 165 (557)
.-+|.++.+++|++.+.- +-+.++++.+|++|||||++|+.++.... +.+| -++++.-.+..++-..=-
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALn--RkFf----RfSvGG~tDvAeIkGHRR 485 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALN--RKFF----RFSVGGMTDVAEIKGHRR 485 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhC--CceE----EEeccccccHHhhcccce
Confidence 458999999999998862 34778999999999999999999999872 3333 245566555544321111
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCcc---------cccc---------ccccCCCCCCCCcEEE
Q 036236 166 KKIGLFDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWERV---------DLTK---------VGVPLPGPQNTTSKVV 227 (557)
Q Consensus 166 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---------~~~~---------l~~~l~~~~~~~s~il 227 (557)
.. ...-....+..++. .+..+-|+.||.|+..- .+-+ +.....+..-.=|+|+
T Consensus 486 TY--------VGAMPGkiIq~LK~-v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVL 556 (906)
T KOG2004|consen 486 TY--------VGAMPGKIIQCLKK-VKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVL 556 (906)
T ss_pred ee--------eccCChHHHHHHHh-hCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheE
Confidence 11 11112222322222 23456688899986321 0111 1111111111115665
Q ss_pred E-eeCChHH----HhcccCCCceecCCCCHHHHHHHHHHHh
Q 036236 228 F-TTRSIDV----CGSMESHRKFPVACLSEEDAWELFREKV 263 (557)
Q Consensus 228 i-TtR~~~v----~~~~~~~~~~~l~~L~~~ea~~L~~~~~ 263 (557)
+ .|-| .+ ....+....|+|.+...+|-.++-.+++
T Consensus 557 FicTAN-~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 557 FICTAN-VIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEEecc-ccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 3 4433 11 1112234578899998888888777664
No 194
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.42 E-value=0.0018 Score=67.41 Aligned_cols=172 Identities=18% Similarity=0.175 Sum_probs=90.1
Q ss_pred CcccchhHHHHHHHHHHhc---------cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHH
Q 036236 90 PTIVGLQSQLEQVWRCLVV---------EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKI 160 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~---------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 160 (557)
+.+.|.+..++.+...... -...+-|.++|++|+|||.+|+.+++.. ...| +-+..+ .+
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~---~~~~---~~l~~~------~l 295 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW---QLPL---LRLDVG------KL 295 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEEhH------Hh
Confidence 3567877766666543210 1345779999999999999999999986 2222 112111 11
Q ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHHH-HhcCCcEEEEEccCCCccc--------------cccccccCCCCCCCCcE
Q 036236 161 QEDIGKKIGLFDDSWKSKSVEEKAVDIFR-SLREKRFVLLLDDIWERVD--------------LTKVGVPLPGPQNTTSK 225 (557)
Q Consensus 161 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~--------------~~~l~~~l~~~~~~~s~ 225 (557)
... . ...+ +.....+.+ .-...+++|++|+++.... +..+...+.....+ .-
T Consensus 296 ~~~----~-------vGes-e~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~-V~ 362 (489)
T CHL00195 296 FGG----I-------VGES-ESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSP-VF 362 (489)
T ss_pred ccc----c-------cChH-HHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCc-eE
Confidence 100 0 0111 122222222 2234789999999963210 00111112222222 44
Q ss_pred EEEeeCChHH-----HhcccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCC
Q 036236 226 VVFTTRSIDV-----CGSMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGL 288 (557)
Q Consensus 226 iliTtR~~~v-----~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 288 (557)
||.||.+... .+.-.-+..+.++.-+.++-.++|..+..........+ .....+++.+.|.
T Consensus 363 vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~--~dl~~La~~T~Gf 428 (489)
T CHL00195 363 VVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKK--YDIKKLSKLSNKF 428 (489)
T ss_pred EEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccc--cCHHHHHhhcCCC
Confidence 5667765432 12112345678888899999999988775532111011 1234666666664
No 195
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.0028 Score=64.08 Aligned_cols=145 Identities=22% Similarity=0.213 Sum_probs=84.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRS 190 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 190 (557)
....+.+.|++|+|||+||..++... .|..+--++. ++ ....+.......+.+.
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S-----~FPFvKiiSp------e~---------------miG~sEsaKc~~i~k~ 590 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSS-----DFPFVKIISP------ED---------------MIGLSESAKCAHIKKI 590 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhc-----CCCeEEEeCh------HH---------------ccCccHHHHHHHHHHH
Confidence 55678899999999999999998764 4543322211 11 1222333344444444
Q ss_pred h----cCCcEEEEEccCCCcccccccccc------------CCCCCCCCcE--EEEeeCChHHHhcccC----CCceecC
Q 036236 191 L----REKRFVLLLDDIWERVDLTKVGVP------------LPGPQNTTSK--VVFTTRSIDVCGSMES----HRKFPVA 248 (557)
Q Consensus 191 l----~~k~~LlVlDdv~~~~~~~~l~~~------------l~~~~~~~s~--iliTtR~~~v~~~~~~----~~~~~l~ 248 (557)
+ +..--.||+||+....+|-.++.. +....+.|-| |+-||....+...++- ...|.++
T Consensus 591 F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vp 670 (744)
T KOG0741|consen 591 FEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVP 670 (744)
T ss_pred HHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecC
Confidence 3 445679999999766666544432 2222222234 4446767777776642 4568899
Q ss_pred CCCH-HHHHHHHHHHhCCCccCCCccHHHHHHHHHHHh
Q 036236 249 CLSE-EDAWELFREKVGQETLESHHDIVELAQTVAREC 285 (557)
Q Consensus 249 ~L~~-~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~ 285 (557)
.++. ++..+.++..-- -.+.+...++++...+|
T Consensus 671 nl~~~~~~~~vl~~~n~----fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 671 NLTTGEQLLEVLEELNI----FSDDEVRAIAEQLLSKK 704 (744)
T ss_pred ccCchHHHHHHHHHccC----CCcchhHHHHHHHhccc
Confidence 8887 677777765421 12233344555555555
No 196
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.40 E-value=0.003 Score=70.09 Aligned_cols=172 Identities=21% Similarity=0.253 Sum_probs=95.1
Q ss_pred CcccchhHHHHHHHHHHhc------------cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCH
Q 036236 90 PTIVGLQSQLEQVWRCLVV------------EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRL 157 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~------------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 157 (557)
..+.|.+..+++|.+.+.- -...+-|.++|++|+|||++|+.+++.. ...| +.+..
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~---~~~f-----i~v~~---- 520 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES---GANF-----IAVRG---- 520 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE-----EEEeh----
Confidence 3467888888877776541 1234568999999999999999999986 2222 22221
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH-HhcCCcEEEEEccCCCcc-----c---------cccccccCCCC-CC
Q 036236 158 EKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFR-SLREKRFVLLLDDIWERV-----D---------LTKVGVPLPGP-QN 221 (557)
Q Consensus 158 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~-----~---------~~~l~~~l~~~-~~ 221 (557)
.+++. .. ...+ +.....+.. .-...+.+|+||+++... . ...+...+.+. ..
T Consensus 521 ~~l~~----~~-------vGes-e~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~ 588 (733)
T TIGR01243 521 PEILS----KW-------VGES-EKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQEL 588 (733)
T ss_pred HHHhh----cc-------cCcH-HHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCC
Confidence 11111 10 1111 222333333 334567999999985321 0 11122222221 12
Q ss_pred CCcEEEEeeCChHHHhc-----ccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCc
Q 036236 222 TTSKVVFTTRSIDVCGS-----MESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLP 289 (557)
Q Consensus 222 ~~s~iliTtR~~~v~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 289 (557)
.+..||.||..+..... -.-+..+.++..+.++-.++|..+..........+ ...+++.+.|.-
T Consensus 589 ~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 589 SNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred CCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCC
Confidence 22456666665543211 12345688888999999999987665443222223 345667777653
No 197
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.0067 Score=63.24 Aligned_cols=164 Identities=20% Similarity=0.259 Sum_probs=90.4
Q ss_pred cccchhHHHHHHHHHHhc------------cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHH
Q 036236 91 TIVGLQSQLEQVWRCLVV------------EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLE 158 (557)
Q Consensus 91 ~~vGr~~~~~~l~~~L~~------------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 158 (557)
.+=|.++.+.+|...+.- -...+-|.++|++|+|||++|+.+++.. ...| +.+...
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~---~~nF-----lsvkgp---- 502 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA---GMNF-----LSVKGP---- 502 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh---cCCe-----eeccCH----
Confidence 444577777777665541 1467889999999999999999999986 3344 222221
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHH-HHhcCCcEEEEEccCCCcc-------------ccccccccCCCCCCCCc
Q 036236 159 KIQEDIGKKIGLFDDSWKSKSVEEKAVDIF-RSLREKRFVLLLDDIWERV-------------DLTKVGVPLPGPQNTTS 224 (557)
Q Consensus 159 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~~-------------~~~~l~~~l~~~~~~~s 224 (557)
+++... ...+ +..+..++ +.-+--++++.||.++... .+.+++..+.+......
T Consensus 503 EL~sk~-----------vGeS-Er~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~ 570 (693)
T KOG0730|consen 503 ELFSKY-----------VGES-ERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKN 570 (693)
T ss_pred HHHHHh-----------cCch-HHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCc
Confidence 121111 1111 22222222 2223457899999986321 12223333333322212
Q ss_pred EEEE-eeCChHHH--hccc---CCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHH
Q 036236 225 KVVF-TTRSIDVC--GSME---SHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELA 278 (557)
Q Consensus 225 ~ili-TtR~~~v~--~~~~---~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~ 278 (557)
.+|| .|..+... ..+. .+..+.+++-+.+.-.++|+.++........-++++++
T Consensus 571 V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La 630 (693)
T KOG0730|consen 571 VLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELA 630 (693)
T ss_pred EEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHH
Confidence 3333 33333321 1122 35567777777788889999998877655555555443
No 198
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.35 E-value=0.00088 Score=73.94 Aligned_cols=159 Identities=17% Similarity=0.173 Sum_probs=86.0
Q ss_pred CcccchhHHHHHHHHHHhc-----cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHH
Q 036236 90 PTIVGLQSQLEQVWRCLVV-----EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDI 164 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~-----~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 164 (557)
...+|.++.+++|++++.. .....++.++|++|+||||+|+.++... ...|- -+..+...+...+...-
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l---~~~~~---~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT---GRKYV---RMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEE---EEEcCCCCCHHHhccch
Confidence 4579999999999988873 2356789999999999999999999876 22332 23333333332221111
Q ss_pred HHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCccc------cccccccCCCC--------------CCCCc
Q 036236 165 GKKIGLFDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWERVD------LTKVGVPLPGP--------------QNTTS 224 (557)
Q Consensus 165 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~~~l~~~--------------~~~~s 224 (557)
....+ .........+... ....-+++||+++.... ...+...+... .-+..
T Consensus 396 ~~~~g--------~~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v 466 (784)
T PRK10787 396 RTYIG--------SMPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDV 466 (784)
T ss_pred hccCC--------CCCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCce
Confidence 11111 1111222223222 22344788999863211 11111111110 11214
Q ss_pred EEEEeeCChHHH-hcccCCCceecCCCCHHHHHHHHHHHh
Q 036236 225 KVVFTTRSIDVC-GSMESHRKFPVACLSEEDAWELFREKV 263 (557)
Q Consensus 225 ~iliTtR~~~v~-~~~~~~~~~~l~~L~~~ea~~L~~~~~ 263 (557)
.+|.|+....+. ...+-...+++.+++.+|-.++..+++
T Consensus 467 ~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 467 MFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 444455432221 111223568999999999988887766
No 199
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.33 E-value=0.01 Score=58.78 Aligned_cols=91 Identities=22% Similarity=0.288 Sum_probs=56.3
Q ss_pred CCcEEEEEccCCCc--cccccccccCCCCCCCCcEEEEeeCChH-HH-hcccCCCceecCCCCHHHHHHHHHHHhCCCcc
Q 036236 193 EKRFVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTRSID-VC-GSMESHRKFPVACLSEEDAWELFREKVGQETL 268 (557)
Q Consensus 193 ~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~iliTtR~~~-v~-~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~ 268 (557)
++.-++|+|+++.. .....++..+..-..+ +.+|++|.+++ +. ...+-...+.+.+++.++..+.+... +.
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~-t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~-~~--- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPG-TVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ-GV--- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcC-cEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc-CC---
Confidence 34558889999653 3344555555444444 66666665543 32 22333467899999999999988764 21
Q ss_pred CCCccHHHHHHHHHHHhCCCchHHHHH
Q 036236 269 ESHHDIVELAQTVARECDGLPLALLTI 295 (557)
Q Consensus 269 ~~~~~~~~~~~~i~~~~~G~PLai~~~ 295 (557)
. . ...++..++|.|+....+
T Consensus 206 ~---~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 A---D----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred C---h----HHHHHHHcCCCHHHHHHH
Confidence 1 1 123577889999755443
No 200
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.33 E-value=0.0054 Score=56.53 Aligned_cols=171 Identities=15% Similarity=0.246 Sum_probs=96.1
Q ss_pred CcccchhHHHHH---HHHHHhc-----cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHH
Q 036236 90 PTIVGLQSQLEQ---VWRCLVV-----EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQ 161 (557)
Q Consensus 90 ~~~vGr~~~~~~---l~~~L~~-----~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 161 (557)
+.+||.++.+.+ |++.|.. +...+-|..+|++|.|||.+|+++++.. +-.| +.+. ..
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~---kvp~-----l~vk-------at 185 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA---KVPL-----LLVK-------AT 185 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc---CCce-----EEec-------hH
Confidence 357898877654 6667762 3478899999999999999999999986 2222 1111 11
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-cCCcEEEEEccCCCc--------------cccccccccCCCCC-CCCcE
Q 036236 162 EDIGKKIGLFDDSWKSKSVEEKAVDIFRSL-REKRFVLLLDDIWER--------------VDLTKVGVPLPGPQ-NTTSK 225 (557)
Q Consensus 162 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~--------------~~~~~l~~~l~~~~-~~~s~ 225 (557)
+-|.+..| +....+..+.+.- +--++++.+|.++.- +....++..+.+.. +.|..
T Consensus 186 ~liGehVG---------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVv 256 (368)
T COG1223 186 ELIGEHVG---------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVV 256 (368)
T ss_pred HHHHHHhh---------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceE
Confidence 22222222 1122233333332 346899999997531 11222333333222 22255
Q ss_pred EEEeeCChHHHhcc---cCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCC
Q 036236 226 VVFTTRSIDVCGSM---ESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGL 288 (557)
Q Consensus 226 iliTtR~~~v~~~~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 288 (557)
.|..|.++..+... .-...++...-+++|-.+++..++..-..+.... .+.++++.+|.
T Consensus 257 tIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~----~~~~~~~t~g~ 318 (368)
T COG1223 257 TIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD----LRYLAAKTKGM 318 (368)
T ss_pred EEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC----HHHHHHHhCCC
Confidence 55566655543221 1123566666778888888888775444333332 45566666664
No 201
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.32 E-value=0.00075 Score=61.51 Aligned_cols=89 Identities=19% Similarity=0.190 Sum_probs=55.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCc-cCHHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHHHH
Q 036236 112 VGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKD-LRLEKIQEDIGKKIGLFDDSW-KSKSVEEKAVDIFR 189 (557)
Q Consensus 112 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~ 189 (557)
++++.++|+.|+||||.+..++.... .. -..+..++.... ....+-++..++.++.+.... ...+..+......+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~-~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLK-LK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHH-HT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHh-hc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHH
Confidence 46899999999999999888887772 22 445667776432 345677888888888763221 22234444443333
Q ss_pred HhcCC-cEEEEEccC
Q 036236 190 SLREK-RFVLLLDDI 203 (557)
Q Consensus 190 ~l~~k-~~LlVlDdv 203 (557)
.++.+ .=++++|-.
T Consensus 78 ~~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 78 KFRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHHTTSSEEEEEE-
T ss_pred HHhhcCCCEEEEecC
Confidence 34333 347888876
No 202
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.30 E-value=0.00043 Score=68.12 Aligned_cols=46 Identities=24% Similarity=0.393 Sum_probs=41.2
Q ss_pred cccchhHHHHHHHHHHhc-----cCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 91 TIVGLQSQLEQVWRCLVV-----EESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 91 ~~vGr~~~~~~l~~~L~~-----~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
.++|.++.++++++++.. +...+++.++|++|+||||||+.+.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 789999999999999974 2356899999999999999999999887
No 203
>PRK06921 hypothetical protein; Provisional
Probab=97.29 E-value=0.00054 Score=65.70 Aligned_cols=39 Identities=31% Similarity=0.347 Sum_probs=29.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEe
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVV 151 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 151 (557)
....+.++|.+|+|||+||..+++... ......+++++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~--~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELM--RKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHh--hhcCceEEEEEH
Confidence 457899999999999999999999872 221234566653
No 204
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.29 E-value=0.0026 Score=71.64 Aligned_cols=47 Identities=26% Similarity=0.388 Sum_probs=39.1
Q ss_pred CcccchhHHHHHHHHHHhc------cC--CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 90 PTIVGLQSQLEQVWRCLVV------EE--SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~------~~--~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..++|.+..++.+...+.. ++ ...++.++|++|+|||++|+.+....
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l 619 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL 619 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4689999999999998873 11 24578899999999999999999876
No 205
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.26 E-value=0.00011 Score=75.97 Aligned_cols=101 Identities=28% Similarity=0.303 Sum_probs=86.1
Q ss_pred EEEcCCCcccCCc-ccccccceEEEccccccccccCCCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCc
Q 036236 434 LVRAGAGLKEAPA-VKGWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIF 512 (557)
Q Consensus 434 ~~~~~~~~~~~~~-~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~ 512 (557)
+...+..+..+.. +..+.++++|++++|.+..+.....++.|..|++++|. +..++. +..+..|+.+++++| .+.
T Consensus 100 l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~-i~~~~~--~~~l~~L~~l~l~~n-~i~ 175 (414)
T KOG0531|consen 100 LDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNL-ISDISG--LESLKSLKLLDLSYN-RIV 175 (414)
T ss_pred eeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCc-chhccC--CccchhhhcccCCcc-hhh
Confidence 3445566677777 77899999999999999999988899999999999998 887776 677999999999999 898
Q ss_pred cCCcc-ccCCCCCCeeeccCCCCcccC
Q 036236 513 QLPVG-MSKLGSLELLDISHTFIKELP 538 (557)
Q Consensus 513 ~lP~~-i~~L~~L~~L~l~~n~l~~lP 538 (557)
.++.. ...+.+|+.|.+.+|.+..+.
T Consensus 176 ~ie~~~~~~~~~l~~l~l~~n~i~~i~ 202 (414)
T KOG0531|consen 176 DIENDELSELISLEELDLGGNSIREIE 202 (414)
T ss_pred hhhhhhhhhccchHHHhccCCchhccc
Confidence 88764 688999999999999887653
No 206
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.26 E-value=0.00064 Score=61.36 Aligned_cols=46 Identities=24% Similarity=0.296 Sum_probs=40.2
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..+||-++.++.+.-... +++.+-+.|.||+|+||||-+..+++..
T Consensus 27 ~dIVGNe~tv~rl~via~-~gnmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAK-EGNMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred HHhhCCHHHHHHHHHHHH-cCCCCceEeeCCCCCchhhHHHHHHHHH
Confidence 468999999988877666 7788899999999999999999888887
No 207
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.26 E-value=0.0019 Score=63.70 Aligned_cols=38 Identities=29% Similarity=0.384 Sum_probs=28.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEe
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVV 151 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 151 (557)
....+.++|.+|+|||+||..+++... ... ..++++++
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~--~~g-~~V~y~t~ 219 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELL--DRG-KSVIYRTA 219 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH--HCC-CeEEEEEH
Confidence 347899999999999999999999872 222 24566544
No 208
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.25 E-value=0.00078 Score=65.78 Aligned_cols=87 Identities=20% Similarity=0.163 Sum_probs=57.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCC---CCCCCHHHHHHH
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDS---WKSKSVEEKAVD 186 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~ 186 (557)
+..+++-|+|++|+||||||.+++.... ..-..++|++....++.. .+++++...+. ......++....
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~~---~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~ 124 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEAQ---KAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEI 124 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHH
Confidence 4678999999999999999999877762 234567888877665542 35555543322 123345555555
Q ss_pred HHHHhc-CCcEEEEEccCC
Q 036236 187 IFRSLR-EKRFVLLLDDIW 204 (557)
Q Consensus 187 l~~~l~-~k~~LlVlDdv~ 204 (557)
+...++ +..-++|+|.+-
T Consensus 125 ~~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 125 AETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHHhhccCCcEEEEcchh
Confidence 555443 456799999983
No 209
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.25 E-value=0.0011 Score=62.16 Aligned_cols=46 Identities=28% Similarity=0.336 Sum_probs=35.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHH
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEK 159 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~ 159 (557)
....++.|+|.+|+|||++|.+++.... .....++|++.. ..+...
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~~---~~~~~v~yi~~e-~~~~~r 66 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEAA---KNGKKVIYIDTE-GLSPER 66 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEECC-CCCHHH
Confidence 3578999999999999999999988762 234678899887 444443
No 210
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.25 E-value=0.0008 Score=65.77 Aligned_cols=87 Identities=22% Similarity=0.170 Sum_probs=57.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCCC---CCCCHHHHHHH
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDSW---KSKSVEEKAVD 186 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~ 186 (557)
+..+++-|+|++|+||||||.+++.... ..-..++|++....+++. .++.++.+.+.. ...+.++....
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~~~---~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i 124 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAEAQ---KLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEI 124 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHH
Confidence 4678999999999999999999877762 234568899887766643 344555432211 23345555555
Q ss_pred HHHHhc-CCcEEEEEccCC
Q 036236 187 IFRSLR-EKRFVLLLDDIW 204 (557)
Q Consensus 187 l~~~l~-~k~~LlVlDdv~ 204 (557)
+...++ +..-++|+|.|-
T Consensus 125 ~~~li~s~~~~lIVIDSva 143 (325)
T cd00983 125 ADSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHHhccCCCEEEEcchH
Confidence 555444 356699999973
No 211
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.00074 Score=72.67 Aligned_cols=105 Identities=23% Similarity=0.379 Sum_probs=66.9
Q ss_pred CcccchhHHHHHHHHHHhc------c--CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHH
Q 036236 90 PTIVGLQSQLEQVWRCLVV------E--ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQ 161 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~------~--~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 161 (557)
..++|.+..++.+.+.+.. + ....+....|+.|||||-||++++..+. +.-+..+-+++|....-.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lf---g~e~aliR~DMSEy~EkH--- 564 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALF---GDEQALIRIDMSEYMEKH--- 564 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhc---CCCccceeechHHHHHHH---
Confidence 4689999999999999873 1 2456777899999999999999998872 111334444444432222
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcE-EEEEccCCC
Q 036236 162 EDIGKKIGLFDDSWKSKSVEEKAVDIFRSLREKRF-VLLLDDIWE 205 (557)
Q Consensus 162 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~ 205 (557)
.+.+-+|.++ ... ..++ ...|-+..+.++| +|.||+|..
T Consensus 565 -sVSrLIGaPP-GYV--Gyee-GG~LTEaVRr~PySViLlDEIEK 604 (786)
T COG0542 565 -SVSRLIGAPP-GYV--GYEE-GGQLTEAVRRKPYSVILLDEIEK 604 (786)
T ss_pred -HHHHHhCCCC-CCc--eecc-ccchhHhhhcCCCeEEEechhhh
Confidence 2223334332 111 1122 3456667788888 888999963
No 212
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.0033 Score=64.68 Aligned_cols=153 Identities=20% Similarity=0.277 Sum_probs=87.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRS 190 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 190 (557)
...-|.++|++|+|||-||++|++.. ...| +++..+ +++.... | . .+..+..+++.
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEa---g~NF-----isVKGP----ELlNkYV---G--------E-SErAVR~vFqR 599 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEA---GANF-----ISVKGP----ELLNKYV---G--------E-SERAVRQVFQR 599 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhc---cCce-----EeecCH----HHHHHHh---h--------h-HHHHHHHHHHH
Confidence 45668899999999999999999987 3444 444332 2222221 1 1 12233333333
Q ss_pred -hcCCcEEEEEccCCCc-------c------ccccccccCCCCC-CCCcEEEEeeCChHHH-----hcccCCCceecCCC
Q 036236 191 -LREKRFVLLLDDIWER-------V------DLTKVGVPLPGPQ-NTTSKVVFTTRSIDVC-----GSMESHRKFPVACL 250 (557)
Q Consensus 191 -l~~k~~LlVlDdv~~~-------~------~~~~l~~~l~~~~-~~~s~iliTtR~~~v~-----~~~~~~~~~~l~~L 250 (557)
-..-+++|+||.++.. . ...+++..+.+.. ..|.-||-.|..+++. +.-.-+....++.-
T Consensus 600 AR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lP 679 (802)
T KOG0733|consen 600 ARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLP 679 (802)
T ss_pred hhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCC
Confidence 3457999999998632 1 1233333443332 2225566566555442 11123456677888
Q ss_pred CHHHHHHHHHHHhC--CCccCCCccHHHHHHHHHHHhCCCc
Q 036236 251 SEEDAWELFREKVG--QETLESHHDIVELAQTVARECDGLP 289 (557)
Q Consensus 251 ~~~ea~~L~~~~~~--~~~~~~~~~~~~~~~~i~~~~~G~P 289 (557)
+.+|-.++++.... ......+-++.++++. .+|.|.-
T Consensus 680 n~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 680 NAEERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred CHHHHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 88899999988876 3333444555655543 3455543
No 213
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.22 E-value=0.001 Score=61.65 Aligned_cols=49 Identities=22% Similarity=0.286 Sum_probs=37.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHH
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQE 162 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 162 (557)
+...++.|+|++|+|||+++.+++.... .....++|++... ++...+.+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~---~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAA---RQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEECCC-CCHHHHHH
Confidence 3578999999999999999999887762 2346789999875 55554443
No 214
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0025 Score=64.51 Aligned_cols=45 Identities=24% Similarity=0.318 Sum_probs=34.9
Q ss_pred cccchhH---HHHHHHHHHhccC---------CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 91 TIVGLQS---QLEQVWRCLVVEE---------SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 91 ~~vGr~~---~~~~l~~~L~~~~---------~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
++-|-|+ |+++|++.|. ++ =++-|.++|++|.|||-||++++...
T Consensus 305 dVkG~DEAK~ELeEiVefLk-dP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLK-DPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred cccChHHHHHHHHHHHHHhc-CcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 3456654 5677778887 32 35678999999999999999999886
No 215
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.00014 Score=71.50 Aligned_cols=101 Identities=23% Similarity=0.239 Sum_probs=61.7
Q ss_pred ccccceEEEccccccccc--cCCCCCCCccEEEcccccccccccc-hHhhcCCCCcEEEeecCCCCccC--Ccc-----c
Q 036236 449 GWENVRRLSLMQNQIETL--SEVPTCPHLLTLFLDFNQELEMIAD-GFFQFMPSLKVLKISNCGNIFQL--PVG-----M 518 (557)
Q Consensus 449 ~~~~l~~l~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~~l~~L~~L~Ls~~~~~~~l--P~~-----i 518 (557)
.++++..|.+..|..... .....+..|+.|+|++|+ +...+. ...+.++.|+.|+++.| .+..+ |+. -
T Consensus 220 ~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt 297 (505)
T KOG3207|consen 220 TFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKT 297 (505)
T ss_pred hCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc-ccccccccccccccchhhhhcccc-CcchhcCCCccchhhh
Confidence 345566666666632111 112345667778888777 444442 22567788888888888 67643 554 3
Q ss_pred cCCCCCCeeeccCCCCcccCh--HHHhHhhhhhcC
Q 036236 519 SKLGSLELLDISHTFIKELPE--ELKKLLEAIQRA 551 (557)
Q Consensus 519 ~~L~~L~~L~l~~n~l~~lP~--~i~~L~~L~~L~ 551 (557)
..+.+|+||+++.|+|.+.|+ .+..+.+|++|.
T Consensus 298 ~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~ 332 (505)
T KOG3207|consen 298 HTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLR 332 (505)
T ss_pred cccccceeeecccCccccccccchhhccchhhhhh
Confidence 566788888888888877664 355555555544
No 216
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.20 E-value=0.0012 Score=73.96 Aligned_cols=47 Identities=23% Similarity=0.348 Sum_probs=38.2
Q ss_pred CcccchhHHHHHHHHHHhc------cC--CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 90 PTIVGLQSQLEQVWRCLVV------EE--SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~------~~--~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..++|.+..++.+.+.+.. ++ ....+.++|+.|+|||+||+.+++..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l 563 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF 563 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 5689999999999888762 11 23467799999999999999999876
No 217
>PRK06526 transposase; Provisional
Probab=97.19 E-value=0.00038 Score=66.19 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=23.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
....+.|+|++|+|||+||..+....
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHH
Confidence 45678999999999999999998876
No 218
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=8.7e-05 Score=72.86 Aligned_cols=107 Identities=20% Similarity=0.240 Sum_probs=78.1
Q ss_pred ccccceEEEcccccccc--cc-CCCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCC--ccccCCCC
Q 036236 449 GWENVRRLSLMQNQIET--LS-EVPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLP--VGMSKLGS 523 (557)
Q Consensus 449 ~~~~l~~l~l~~~~~~~--~~-~~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP--~~i~~L~~ 523 (557)
.++.+..|.+++|.+.. +. -...||+|..|+|+.|..+..-... ...+..|+.|||++| ++-.+| ..++.|+.
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N-~li~~~~~~~~~~l~~ 272 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNN-NLIDFDQGYKVGTLPG 272 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCC-cccccccccccccccc
Confidence 44678888888888763 11 1267899999999998522111111 455678999999999 777777 58899999
Q ss_pred CCeeeccCCCCcc--cChH-----HHhHhhhhhcCCCCCCC
Q 036236 524 LELLDISHTFIKE--LPEE-----LKKLLEAIQRAPRPDRT 557 (557)
Q Consensus 524 L~~L~l~~n~l~~--lP~~-----i~~L~~L~~L~~~~~~~ 557 (557)
|+.|+++.|.|.. +|+. ..++.+|++|..+.+++
T Consensus 273 L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 273 LNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred hhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 9999999999885 4544 45678899998877653
No 219
>PRK09354 recA recombinase A; Provisional
Probab=97.18 E-value=0.0011 Score=65.38 Aligned_cols=87 Identities=20% Similarity=0.156 Sum_probs=59.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCC---CCCCCHHHHHHH
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDS---WKSKSVEEKAVD 186 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~ 186 (557)
+..+++-|+|++|+||||||.+++... ...-..++|++....++. ..++.++...+. ....+.++....
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~~---~~~G~~~~yId~E~s~~~-----~~a~~lGvdld~lli~qp~~~Eq~l~i 129 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDP-----VYAKKLGVDIDNLLVSQPDTGEQALEI 129 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEECCccchHH-----HHHHHcCCCHHHeEEecCCCHHHHHHH
Confidence 467899999999999999999988776 233467889988877665 245555544322 123345555555
Q ss_pred HHHHhc-CCcEEEEEccCC
Q 036236 187 IFRSLR-EKRFVLLLDDIW 204 (557)
Q Consensus 187 l~~~l~-~k~~LlVlDdv~ 204 (557)
+...++ +..-+||+|.|-
T Consensus 130 ~~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 130 ADTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHHhhcCCCCEEEEeChh
Confidence 555544 356699999983
No 220
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.18 E-value=0.0041 Score=69.82 Aligned_cols=47 Identities=26% Similarity=0.400 Sum_probs=38.1
Q ss_pred CcccchhHHHHHHHHHHhc------cC--CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 90 PTIVGLQSQLEQVWRCLVV------EE--SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~------~~--~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..++|.+..++.+...+.. ++ ...++.++|+.|+|||++|+.+++..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999998888862 11 22578899999999999999998876
No 221
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.18 E-value=0.0011 Score=66.43 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=16.9
Q ss_pred cceEEEccc-cccccccCCCCCCCccEEEccccccccccc
Q 036236 452 NVRRLSLMQ-NQIETLSEVPTCPHLLTLFLDFNQELEMIA 490 (557)
Q Consensus 452 ~l~~l~l~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p 490 (557)
+++.|.+.+ +.+..+|... .++|+.|.+++|..+..+|
T Consensus 73 sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 73 ELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred CCcEEEccCCCCcccCCchh-hhhhhheEccCcccccccc
Confidence 455555554 2333333221 2355555555553344444
No 222
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.17 E-value=0.00087 Score=74.87 Aligned_cols=47 Identities=23% Similarity=0.410 Sum_probs=38.8
Q ss_pred CcccchhHHHHHHHHHHhc------c--CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 90 PTIVGLQSQLEQVWRCLVV------E--ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~------~--~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..++|.+..++.+.+.+.. + ....++.++|++|+|||.||+.++...
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999998852 1 234578999999999999999998876
No 223
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.17 E-value=0.0036 Score=58.78 Aligned_cols=92 Identities=17% Similarity=0.206 Sum_probs=55.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCC----CcceEEEEEeCCccCHHHHHHHHHHHhCCCCCC-------CCCC
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPI----NFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDS-------WKSK 178 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~ 178 (557)
+...++.|+|++|+|||+||.+++.... ... .-..++|++....++...+. ++....+..... ....
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~~-~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEAQ-LPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHhh-cccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCC
Confidence 3678999999999999999999877651 111 12568899887766654443 333333221100 0123
Q ss_pred CHHHHHHHHHHHhc----CCcEEEEEccC
Q 036236 179 SVEEKAVDIFRSLR----EKRFVLLLDDI 203 (557)
Q Consensus 179 ~~~~~~~~l~~~l~----~k~~LlVlDdv 203 (557)
+.++....+..... .+.-++|+|.+
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsi 123 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSV 123 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCc
Confidence 44455444444432 34558888887
No 224
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.16 E-value=0.0021 Score=60.81 Aligned_cols=58 Identities=24% Similarity=0.402 Sum_probs=40.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCC----CcceEEEEEeCCccCHHHHHHHHHHHhC
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPI----NFDCVIWVVVSKDLRLEKIQEDIGKKIG 169 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 169 (557)
+...++.|+|++|+|||+||.+++... .... ....++|++....++...+ .++++..+
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~-~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~~ 78 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTV-QLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERFG 78 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHe-eCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHhc
Confidence 367899999999999999999997554 1111 1358999998876665444 33344433
No 225
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.15 E-value=0.00034 Score=58.56 Aligned_cols=23 Identities=30% Similarity=0.535 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 036236 114 IIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 114 vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
+|+|.|++|+||||+|+.+++..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999986
No 226
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.13 E-value=0.009 Score=59.57 Aligned_cols=41 Identities=22% Similarity=0.404 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHhcc--CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 96 QSQLEQVWRCLVVE--ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 96 ~~~~~~l~~~L~~~--~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
+.-.+.|.+.+... +...+|+|.|.=|+|||++.+.+.+..
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L 44 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEEL 44 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44456677777632 578899999999999999999999988
No 227
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.0089 Score=55.00 Aligned_cols=167 Identities=19% Similarity=0.222 Sum_probs=89.3
Q ss_pred CcccchhHHHHHHHHHHhc------------cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCH
Q 036236 90 PTIVGLQSQLEQVWRCLVV------------EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRL 157 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~------------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 157 (557)
+.+=|-+.+++++++.+.- -..++-|..+|++|.|||-+|++++..- ...|-
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT---~aTFL------------- 234 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT---NATFL------------- 234 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc---cchHH-------------
Confidence 3466889999999988751 0256778999999999999999988775 22231
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-cCCcEEEEEccCCCc-------c---c------cccccccCCCCC
Q 036236 158 EKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSL-REKRFVLLLDDIWER-------V---D------LTKVGVPLPGPQ 220 (557)
Q Consensus 158 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~-------~---~------~~~l~~~l~~~~ 220 (557)
.+..-=+-|+.+ .+-..+....+..- ...+.+|++|.++.- + + .-+++..+.+..
T Consensus 235 -KLAgPQLVQMfI-------GdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFs 306 (424)
T KOG0652|consen 235 -KLAGPQLVQMFI-------GDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFS 306 (424)
T ss_pred -HhcchHHHhhhh-------cchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCC
Confidence 000000011111 11112222222222 346889999987521 0 0 111222222222
Q ss_pred -CCCcEEEEeeCChHH-----HhcccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHH
Q 036236 221 -NTTSKVVFTTRSIDV-----CGSMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQT 280 (557)
Q Consensus 221 -~~~s~iliTtR~~~v-----~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~ 280 (557)
....+||..|..-.+ .++-.-++.++.+--+++.-..+++-+........+-+++++++.
T Consensus 307 s~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRs 372 (424)
T KOG0652|consen 307 SDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARS 372 (424)
T ss_pred CccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhc
Confidence 122577776654333 333334556666555555445566656655555566666666543
No 228
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.12 E-value=0.0033 Score=58.69 Aligned_cols=43 Identities=19% Similarity=0.165 Sum_probs=33.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCcc
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDL 155 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~ 155 (557)
....++.|.|.+|+||||+|.+++.... ..-..++|++....+
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~~---~~g~~v~yi~~e~~~ 59 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVETA---GQGKKVAYIDTEGLS 59 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEECCCCC
Confidence 3678999999999999999999988762 233467788765444
No 229
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.12 E-value=0.00046 Score=59.25 Aligned_cols=44 Identities=23% Similarity=0.276 Sum_probs=33.7
Q ss_pred cchhHHHHHHHHHHhc-cCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 93 VGLQSQLEQVWRCLVV-EESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 93 vGr~~~~~~l~~~L~~-~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
||....++++.+.+.. ......|.|+|..|+||+++|+.++...
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 5777778888777763 3566778999999999999999998876
No 230
>PRK04296 thymidine kinase; Provisional
Probab=97.11 E-value=0.00048 Score=62.67 Aligned_cols=113 Identities=17% Similarity=0.045 Sum_probs=61.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc
Q 036236 113 GIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSLR 192 (557)
Q Consensus 113 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 192 (557)
.++.|+|+.|.||||+|..++.+.. .....++.+. ..++.......+++.++............+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~---~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYE---ERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH---HcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hC
Confidence 5788999999999999999988872 2222333332 1112222233455666543322112234444444444 33
Q ss_pred CCcEEEEEccCCCc--cccccccccCCCCCCCCcEEEEeeCChH
Q 036236 193 EKRFVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTRSID 234 (557)
Q Consensus 193 ~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~iliTtR~~~ 234 (557)
++.-+||+|.+.-. .+..++...+. ..+ ..|++|.++..
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g-~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVLD--DLG-IPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHHH--HcC-CeEEEEecCcc
Confidence 35569999998421 21222222221 233 78999988743
No 231
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.11 E-value=0.0028 Score=63.19 Aligned_cols=46 Identities=22% Similarity=0.310 Sum_probs=37.4
Q ss_pred cccchhHHHHHHHHHHhccCCee-EEEEEcCCCCcHHHHHHHHHhhc
Q 036236 91 TIVGLQSQLEQVWRCLVVEESVG-IIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 91 ~~vGr~~~~~~l~~~L~~~~~~~-vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
.++|-+....++..+....++.. .+.++|++|+||||+|..+++..
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l 48 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKEL 48 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHH
Confidence 35777888888888887434344 59999999999999999999887
No 232
>PRK09183 transposase/IS protein; Provisional
Probab=97.11 E-value=0.00061 Score=65.17 Aligned_cols=26 Identities=35% Similarity=0.353 Sum_probs=22.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
....+.|+|++|+|||+||..++...
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 45678899999999999999998775
No 233
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.10 E-value=0.00011 Score=40.67 Aligned_cols=19 Identities=32% Similarity=0.585 Sum_probs=9.3
Q ss_pred CCeeeccCCCCcccChHHH
Q 036236 524 LELLDISHTFIKELPEELK 542 (557)
Q Consensus 524 L~~L~l~~n~l~~lP~~i~ 542 (557)
|++|||++|+|+.+|++|+
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4455555555555554443
No 234
>PRK06762 hypothetical protein; Provisional
Probab=97.07 E-value=0.011 Score=52.57 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 112 VGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 112 ~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..+|.|.|++|+||||+|+.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999886
No 235
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.02 E-value=0.0098 Score=58.78 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=23.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
.-...+.++|+.|+|||++|..++...
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~l 45 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQAL 45 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHH
Confidence 345678899999999999999998875
No 236
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.02 E-value=0.0039 Score=61.21 Aligned_cols=93 Identities=20% Similarity=0.235 Sum_probs=57.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccC---CCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCCC-------CCCC
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLEN---PINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDSW-------KSKS 179 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~---~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-------~~~~ 179 (557)
+...++-|+|++|+|||+|+.+++-..... ...-..++|++....+++..+. ++++.++...+.. ...+
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d~~~~l~~i~~~~~~~ 172 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVDPDAVLDNILYARAYT 172 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCChHHhcCcEEEecCCC
Confidence 366899999999999999999876443111 1123478999999888887765 4566666543211 1123
Q ss_pred HHHHH---HHHHHHhc-CCcEEEEEccC
Q 036236 180 VEEKA---VDIFRSLR-EKRFVLLLDDI 203 (557)
Q Consensus 180 ~~~~~---~~l~~~l~-~k~~LlVlDdv 203 (557)
.++.. ..+...+. ++.-|||+|.+
T Consensus 173 ~e~~~~~l~~l~~~i~~~~~~LvVIDSi 200 (313)
T TIGR02238 173 SEHQMELLDYLAAKFSEEPFRLLIVDSI 200 (313)
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEEcc
Confidence 33333 22222332 34457888887
No 237
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=97.01 E-value=0.0029 Score=60.35 Aligned_cols=59 Identities=22% Similarity=0.269 Sum_probs=41.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhccc---CCCCcceEEEEEeCCccCHHHHHHHHHHHhCC
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLE---NPINFDCVIWVVVSKDLRLEKIQEDIGKKIGL 170 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~---~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 170 (557)
...+.=|+|++|+|||.|+.+++-...- ....-..++|++....+....+. +|++..+.
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~ 98 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGL 98 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhcccc
Confidence 5578899999999999999887655311 11223479999999988877765 45665543
No 238
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.00 E-value=0.0018 Score=56.40 Aligned_cols=117 Identities=22% Similarity=0.156 Sum_probs=59.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEe---CCccCHHHHHHHHHHHhCC---CC-CCCCCCCHHH---
Q 036236 113 GIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVV---SKDLRLEKIQEDIGKKIGL---FD-DSWKSKSVEE--- 182 (557)
Q Consensus 113 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~---~~~~~~~~~~~~i~~~l~~---~~-~~~~~~~~~~--- 182 (557)
..|-|++..|.||||+|...+-+.. .+--.+.++.. ........+++.+- .+.. .. ..+...+..+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~---~~g~~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~ 78 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRAL---GHGYRVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIA 78 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHH
Confidence 4788999999999999998877762 22223444433 22233334444331 0000 00 0001111111
Q ss_pred ----HHHHHHHHhcC-CcEEEEEccCCCc-----cccccccccCCCCCCCCcEEEEeeCChH
Q 036236 183 ----KAVDIFRSLRE-KRFVLLLDDIWER-----VDLTKVGVPLPGPQNTTSKVVFTTRSID 234 (557)
Q Consensus 183 ----~~~~l~~~l~~-k~~LlVlDdv~~~-----~~~~~l~~~l~~~~~~~s~iliTtR~~~ 234 (557)
.....++.+.. .-=|||||++-.. .+.+.+...+.....+ ..||+|.|+..
T Consensus 79 ~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~-~evIlTGr~~p 139 (159)
T cd00561 79 AAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPED-LELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCC-CEEEEECCCCC
Confidence 12223333444 4459999998432 2233344444433344 78999999854
No 239
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.00 E-value=0.0042 Score=59.13 Aligned_cols=90 Identities=24% Similarity=0.308 Sum_probs=53.2
Q ss_pred hhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCC
Q 036236 95 LQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDS 174 (557)
Q Consensus 95 r~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 174 (557)
+...+..+.+....-+...-+.++|.+|+|||.||.++.+... +..+ .+.+++ ..++..++......
T Consensus 88 ~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~--~~g~-sv~f~~------~~el~~~Lk~~~~~---- 154 (254)
T COG1484 88 DKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL--KAGI-SVLFIT------APDLLSKLKAAFDE---- 154 (254)
T ss_pred hHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH--HcCC-eEEEEE------HHHHHHHHHHHHhc----
Confidence 4444444443332113777899999999999999999999982 2233 345543 34566666555432
Q ss_pred CCCCCHHHHHHHHHHHhcCCcEEEEEccCC
Q 036236 175 WKSKSVEEKAVDIFRSLREKRFVLLLDDIW 204 (557)
Q Consensus 175 ~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 204 (557)
......+.+.+. +-=||||||+-
T Consensus 155 ------~~~~~~l~~~l~-~~dlLIiDDlG 177 (254)
T COG1484 155 ------GRLEEKLLRELK-KVDLLIIDDIG 177 (254)
T ss_pred ------CchHHHHHHHhh-cCCEEEEeccc
Confidence 111122233222 23389999984
No 240
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.00 E-value=0.0027 Score=66.51 Aligned_cols=55 Identities=24% Similarity=0.385 Sum_probs=43.0
Q ss_pred cccchhHHHHHHHHHHhc----cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEE
Q 036236 91 TIVGLQSQLEQVWRCLVV----EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVV 150 (557)
Q Consensus 91 ~~vGr~~~~~~l~~~L~~----~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 150 (557)
.++--.+-++++..||.. ....+++.+.|++|+||||.++.+++.. .|+..-|..
T Consensus 20 eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el-----g~~v~Ew~n 78 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL-----GFEVQEWIN 78 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh-----CCeeEEecC
Confidence 455556778888888873 2346799999999999999999999886 466666764
No 241
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.00 E-value=0.00021 Score=64.09 Aligned_cols=73 Identities=26% Similarity=0.407 Sum_probs=42.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRS 190 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 190 (557)
...-+.|+|++|+|||.||..+.+.... .. -.+.|+. ..+++..+-..- .....++ +.+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~--~g-~~v~f~~------~~~L~~~l~~~~-------~~~~~~~----~~~~ 105 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIR--KG-YSVLFIT------ASDLLDELKQSR-------SDGSYEE----LLKR 105 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHH--TT---EEEEE------HHHHHHHHHCCH-------CCTTHCH----HHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhcc--CC-cceeEee------cCceeccccccc-------cccchhh----hcCc
Confidence 4567999999999999999999988732 22 2355654 345555553321 1112222 2233
Q ss_pred hcCCcEEEEEccCC
Q 036236 191 LREKRFVLLLDDIW 204 (557)
Q Consensus 191 l~~k~~LlVlDdv~ 204 (557)
+.+ .=||||||+.
T Consensus 106 l~~-~dlLilDDlG 118 (178)
T PF01695_consen 106 LKR-VDLLILDDLG 118 (178)
T ss_dssp HHT-SSCEEEETCT
T ss_pred ccc-ccEecccccc
Confidence 332 3478899985
No 242
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.99 E-value=0.005 Score=58.03 Aligned_cols=89 Identities=19% Similarity=0.268 Sum_probs=50.9
Q ss_pred HHHHHHHHHhc-cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCCCC
Q 036236 98 QLEQVWRCLVV-EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDSWK 176 (557)
Q Consensus 98 ~~~~l~~~L~~-~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~ 176 (557)
.+..+.++... ......+.++|.+|+|||+||..+++.... .-..+++++ ..+++..+-..... .
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~---~g~~v~~it------~~~l~~~l~~~~~~-----~ 149 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLL---RGKSVLIIT------VADIMSAMKDTFSN-----S 149 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEE------HHHHHHHHHHHHhh-----c
Confidence 34444444442 123457899999999999999999998732 223455553 34455554443320 1
Q ss_pred CCCHHHHHHHHHHHhcCCcEEEEEccCCC
Q 036236 177 SKSVEEKAVDIFRSLREKRFVLLLDDIWE 205 (557)
Q Consensus 177 ~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 205 (557)
..+.+ .+.+.+. +.=+|||||+..
T Consensus 150 ~~~~~----~~l~~l~-~~dlLvIDDig~ 173 (244)
T PRK07952 150 ETSEE----QLLNDLS-NVDLLVIDEIGV 173 (244)
T ss_pred cccHH----HHHHHhc-cCCEEEEeCCCC
Confidence 11122 2333444 344888999953
No 243
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.98 E-value=0.00045 Score=74.89 Aligned_cols=58 Identities=24% Similarity=0.289 Sum_probs=27.2
Q ss_pred ccccceEEEccccccccccCCCCCCCccEEEccccccccccc--chHhhcCCCCcEEEeecC
Q 036236 449 GWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNQELEMIA--DGFFQFMPSLKVLKISNC 508 (557)
Q Consensus 449 ~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p--~~~~~~l~~L~~L~Ls~~ 508 (557)
++++|+.|++++.+++.+...+++++|++|.+.+-. +..-. .. +-+|++|++||+|..
T Consensus 171 sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe-~e~~~~l~~-LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLE-FESYQDLID-LFNLKKLRVLDISRD 230 (699)
T ss_pred ccCccceeecCCCCccCcHHHhccccHHHHhccCCC-CCchhhHHH-HhcccCCCeeecccc
Confidence 344555555555555555444555555555544332 11111 11 234555555555544
No 244
>PRK04132 replication factor C small subunit; Provisional
Probab=96.97 E-value=0.011 Score=65.04 Aligned_cols=153 Identities=13% Similarity=0.053 Sum_probs=90.2
Q ss_pred Ec--CCCCcHHHHHHHHHhhcccCCCCc-ceEEEEEeCCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCC
Q 036236 118 YG--MGGVGKTTLLTHINNKFLENPINF-DCVIWVVVSKDLRLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSLREK 194 (557)
Q Consensus 118 ~G--~~GiGKTtLa~~v~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k 194 (557)
.| |.++||||+|..++++... ..+ ..++-++.+...+...+...+-....... . -..+
T Consensus 570 ~G~lPh~lGKTT~A~ala~~l~g--~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~-----~------------~~~~ 630 (846)
T PRK04132 570 GGNLPTVLHNTTAALALARELFG--ENWRHNFLELNASDERGINVIREKVKEFARTKP-----I------------GGAS 630 (846)
T ss_pred cCCCCCcccHHHHHHHHHHhhhc--ccccCeEEEEeCCCcccHHHHHHHHHHHHhcCC-----c------------CCCC
Confidence 36 7899999999999998621 122 23566666654444433332222111100 0 0124
Q ss_pred cEEEEEccCCCcc--ccccccccCCCCCCCCcEEEEeeCChH-HHh-cccCCCceecCCCCHHHHHHHHHHHhCCCccCC
Q 036236 195 RFVLLLDDIWERV--DLTKVGVPLPGPQNTTSKVVFTTRSID-VCG-SMESHRKFPVACLSEEDAWELFREKVGQETLES 270 (557)
Q Consensus 195 ~~LlVlDdv~~~~--~~~~l~~~l~~~~~~~s~iliTtR~~~-v~~-~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~ 270 (557)
.-++|+|+++... ....++..+...... +++|+++.+.. +.. ..+....+.+.+++.++....+...+.......
T Consensus 631 ~KVvIIDEaD~Lt~~AQnALLk~lEep~~~-~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i 709 (846)
T PRK04132 631 FKIIFLDEADALTQDAQQALRRTMEMFSSN-VRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL 709 (846)
T ss_pred CEEEEEECcccCCHHHHHHHHHHhhCCCCC-eEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC
Confidence 5799999997543 334444444332233 67777666543 221 123356799999999999988887665433222
Q ss_pred CccHHHHHHHHHHHhCCCchHHH
Q 036236 271 HHDIVELAQTVARECDGLPLALL 293 (557)
Q Consensus 271 ~~~~~~~~~~i~~~~~G~PLai~ 293 (557)
+ .+....|++.++|.+..+.
T Consensus 710 ~---~e~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 710 T---EEGLQAILYIAEGDMRRAI 729 (846)
T ss_pred C---HHHHHHHHHHcCCCHHHHH
Confidence 2 3577899999999885443
No 245
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.016 Score=62.31 Aligned_cols=176 Identities=17% Similarity=0.194 Sum_probs=100.0
Q ss_pred CcccchhHHHHHHH---HHHhcc--------CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHH
Q 036236 90 PTIVGLQSQLEQVW---RCLVVE--------ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLE 158 (557)
Q Consensus 90 ~~~vGr~~~~~~l~---~~L~~~--------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 158 (557)
.++.|-++.+++|. +.|... .-++-|.++|++|+|||-||++++... .+ =|++++..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-gV-------PF~svSGS---- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-GV-------PFFSVSGS---- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-CC-------ceeeechH----
Confidence 35678876655554 555520 245778999999999999999999886 22 23444432
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-cCCcEEEEEccCCCcc-----------------ccccccccCCCCC
Q 036236 159 KIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSL-REKRFVLLLDDIWERV-----------------DLTKVGVPLPGPQ 220 (557)
Q Consensus 159 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~-----------------~~~~l~~~l~~~~ 220 (557)
++ .+.+.. .. ......+...- ...++++.+|+++... .+.++...+.+..
T Consensus 379 EF----vE~~~g-------~~-asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~ 446 (774)
T KOG0731|consen 379 EF----VEMFVG-------VG-ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFE 446 (774)
T ss_pred HH----HHHhcc-------cc-hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCc
Confidence 11 111111 01 12223333332 3468899999885321 1223333333222
Q ss_pred CCC-cEEEEeeCChHHHhc-----ccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHH
Q 036236 221 NTT-SKVVFTTRSIDVCGS-----MESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLAL 292 (557)
Q Consensus 221 ~~~-s~iliTtR~~~v~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai 292 (557)
..+ ..++-+|...++... -.-++.+.++.-+...-.++|.-++...... .+..++.+ |+..+-|.+=|.
T Consensus 447 ~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~--~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 447 TSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD--DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred CCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC--cchhhHHH-HHhcCCCCcHHH
Confidence 221 233345555444221 1235678888888888889999888665432 34456666 888888887554
No 246
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.95 E-value=0.0027 Score=60.43 Aligned_cols=91 Identities=19% Similarity=0.295 Sum_probs=56.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCc-ceEEEEEeCCcc-CHHHHHHHHHHHhCCCC-----CCCCCCCHH-
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINF-DCVIWVVVSKDL-RLEKIQEDIGKKIGLFD-----DSWKSKSVE- 181 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f-~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-----~~~~~~~~~- 181 (557)
....-++|.|.+|+|||||++++++.. ..+| +.++++.+++.. .+.++.+.+...-.+.. ...+.....
T Consensus 67 g~GQr~~If~~~G~GKTtLa~~i~~~i---~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r 143 (274)
T cd01133 67 AKGGKIGLFGGAGVGKTVLIMELINNI---AKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGAR 143 (274)
T ss_pred ccCCEEEEecCCCCChhHHHHHHHHHH---HhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHH
Confidence 467789999999999999999999987 2233 456666676654 45566666654321111 001111111
Q ss_pred ----HHHHHHHHHh---cCCcEEEEEccC
Q 036236 182 ----EKAVDIFRSL---REKRFVLLLDDI 203 (557)
Q Consensus 182 ----~~~~~l~~~l---~~k~~LlVlDdv 203 (557)
.....+.+++ +++.+|+++||+
T Consensus 144 ~~~~~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 144 ARVALTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 1222344555 388999999998
No 247
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.94 E-value=0.0052 Score=58.14 Aligned_cols=49 Identities=16% Similarity=0.157 Sum_probs=36.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHH
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQED 163 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 163 (557)
+...++.|.|.+|+|||++|.++..... ..-..++|++... ++.++.+.
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~---~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGL---QMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHH---HcCCcEEEEEeeC--CHHHHHHH
Confidence 4678999999999999999999766541 2345688888765 34455554
No 248
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.007 Score=65.37 Aligned_cols=155 Identities=18% Similarity=0.230 Sum_probs=90.8
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCc----ceEEEEEeCCccCHHHHHHHHH
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINF----DCVIWVVVSKDLRLEKIQEDIG 165 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f----~~~~wv~~~~~~~~~~~~~~i~ 165 (557)
..++||+++++++++.|.. ....--.++|.+|||||++|.-++.+... ..-. +..++. + ++.
T Consensus 170 DPvIGRd~EI~r~iqIL~R-R~KNNPvLiGEpGVGKTAIvEGLA~rIv~-g~VP~~L~~~~i~s-L-----------D~g 235 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSR-RTKNNPVLVGEPGVGKTAIVEGLAQRIVN-GDVPESLKDKRIYS-L-----------DLG 235 (786)
T ss_pred CCCcChHHHHHHHHHHHhc-cCCCCCeEecCCCCCHHHHHHHHHHHHhc-CCCCHHHcCCEEEE-e-----------cHH
Confidence 3579999999999999983 22233346899999999999998888621 1111 111110 0 111
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHhc-CCcEEEEEccCCCc----------cccccccccCCCCCCCCcEEEEeeCChH
Q 036236 166 KKIGLFDDSWKSKSVEEKAVDIFRSLR-EKRFVLLLDDIWER----------VDLTKVGVPLPGPQNTTSKVVFTTRSID 234 (557)
Q Consensus 166 ~~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~----------~~~~~l~~~l~~~~~~~s~iliTtR~~~ 234 (557)
.-... .. -..+.++....+.+.++ ..+++|++|.+... .+...++.| ....|.-+.|-.|...+
T Consensus 236 ~LvAG--ak-yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKP--aLARGeL~~IGATT~~E 310 (786)
T COG0542 236 SLVAG--AK-YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKP--ALARGELRCIGATTLDE 310 (786)
T ss_pred HHhcc--cc-ccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHH--HHhcCCeEEEEeccHHH
Confidence 11111 11 23456666666666654 35899999998532 112222222 22234356676555444
Q ss_pred HHhc-------ccCCCceecCCCCHHHHHHHHHHHh
Q 036236 235 VCGS-------MESHRKFPVACLSEEDAWELFREKV 263 (557)
Q Consensus 235 v~~~-------~~~~~~~~l~~L~~~ea~~L~~~~~ 263 (557)
.-.. ..-...+.+...+.+++..++....
T Consensus 311 YRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 311 YRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 3211 1235678899999999999987643
No 249
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.054 Score=57.68 Aligned_cols=93 Identities=18% Similarity=0.222 Sum_probs=60.7
Q ss_pred CcccchhHHHHHHHHHHhc---------c--CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHH
Q 036236 90 PTIVGLQSQLEQVWRCLVV---------E--ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLE 158 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~---------~--~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 158 (557)
..+=|.++.+.+|.+.+.- . .+..-|.++|++|.|||-+|++|+-.. . .-|++|-++
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc---s-----L~FlSVKGP---- 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC---S-----LNFLSVKGP---- 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc---e-----eeEEeecCH----
Confidence 3556889999999887752 1 135678999999999999999999887 2 234444443
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCC
Q 036236 159 KIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWE 205 (557)
Q Consensus 159 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 205 (557)
+++.... ..+.+...+.+.+.-.-++|+|.||.+++
T Consensus 740 ELLNMYV-----------GqSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 740 ELLNMYV-----------GQSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred HHHHHHh-----------cchHHHHHHHHHHhhccCCeEEEeccccc
Confidence 2333221 12223333333334445899999999975
No 250
>PRK06696 uridine kinase; Validated
Probab=96.92 E-value=0.0013 Score=61.56 Aligned_cols=43 Identities=12% Similarity=0.210 Sum_probs=36.4
Q ss_pred chhHHHHHHHHHHhc--cCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 94 GLQSQLEQVWRCLVV--EESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 94 Gr~~~~~~l~~~L~~--~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
.|++.+++|.+.+.. .+...+|+|.|.+|+||||||+.+...+
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 467778888888763 3567899999999999999999999887
No 251
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.92 E-value=0.011 Score=64.31 Aligned_cols=170 Identities=19% Similarity=0.184 Sum_probs=88.8
Q ss_pred cccchhHHHHHHHHHHhc--c---------CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHH
Q 036236 91 TIVGLQSQLEQVWRCLVV--E---------ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEK 159 (557)
Q Consensus 91 ~~vGr~~~~~~l~~~L~~--~---------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~ 159 (557)
.+.|.+..++++.+.+.- + .-.+-|.|+|++|+|||++|+.++... ...| +.++.+ +
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~---~~~f---~~is~~------~ 220 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGS------D 220 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCE---EEEehH------H
Confidence 456777666655544321 1 123459999999999999999998886 2222 122211 1
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCccc----------------cccccccCCCCC-CC
Q 036236 160 IQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWERVD----------------LTKVGVPLPGPQ-NT 222 (557)
Q Consensus 160 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~l~~~l~~~~-~~ 222 (557)
+.... . ..........+.......+++|++|+++.... +..+...+.... +.
T Consensus 221 ~~~~~---~--------g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~ 289 (644)
T PRK10733 221 FVEMF---V--------GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE 289 (644)
T ss_pred hHHhh---h--------cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCC
Confidence 11100 0 11112222223333345789999999864210 111111121111 22
Q ss_pred CcEEEEeeCChHHHhc-----ccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCC
Q 036236 223 TSKVVFTTRSIDVCGS-----MESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDG 287 (557)
Q Consensus 223 ~s~iliTtR~~~v~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G 287 (557)
+..+|.||..++.... -.-+..+.++..+.++-.+++..+..........+ ...+++.+.|
T Consensus 290 ~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d----~~~la~~t~G 355 (644)
T PRK10733 290 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID----AAIIARGTPG 355 (644)
T ss_pred CeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCC----HHHHHhhCCC
Confidence 2445557766554221 11245678888888888888888775543222222 2345666655
No 252
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.91 E-value=0.0021 Score=67.44 Aligned_cols=74 Identities=24% Similarity=0.324 Sum_probs=53.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFR 189 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 189 (557)
+..++..++|++|+||||||.-++++. .| .++=|..|..-+...+-..|...+....
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqa-----GY-sVvEINASDeRt~~~v~~kI~~avq~~s----------------- 380 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQA-----GY-SVVEINASDERTAPMVKEKIENAVQNHS----------------- 380 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhc-----Cc-eEEEecccccccHHHHHHHHHHHHhhcc-----------------
Confidence 356899999999999999999998885 23 3566777777777777666666554321
Q ss_pred Hh--cCCcEEEEEccCCCc
Q 036236 190 SL--REKRFVLLLDDIWER 206 (557)
Q Consensus 190 ~l--~~k~~LlVlDdv~~~ 206 (557)
.+ .+++.-||+|.++..
T Consensus 381 ~l~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 381 VLDADSRPVCLVIDEIDGA 399 (877)
T ss_pred ccccCCCcceEEEecccCC
Confidence 12 257888999999754
No 253
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.89 E-value=0.006 Score=60.41 Aligned_cols=61 Identities=20% Similarity=0.184 Sum_probs=44.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhccc--C-CCCcceEEEEEeCCccCHHHHHHHHHHHhCCC
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLE--N-PINFDCVIWVVVSKDLRLEKIQEDIGKKIGLF 171 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~--~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 171 (557)
+...++-|+|++|+|||+|+.+++-.... . ...-..++||+....+.+..+.+ +++.++..
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 36688899999999999999988644311 0 11234789999999888877654 56666654
No 254
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.87 E-value=0.0051 Score=60.25 Aligned_cols=117 Identities=26% Similarity=0.250 Sum_probs=65.0
Q ss_pred chhHHHHHHHHHHhc---cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCC
Q 036236 94 GLQSQLEQVWRCLVV---EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGL 170 (557)
Q Consensus 94 Gr~~~~~~l~~~L~~---~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 170 (557)
+|........+++.. .+..+-+.|+|..|+|||.||..+++... .... .+.++.+ ..++..+......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~--~~g~-~v~~~~~------~~l~~~lk~~~~~ 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA--KKGV-SSTLLHF------PEFIRELKNSISD 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCC-CEEEEEH------HHHHHHHHHHHhc
Confidence 455555555555552 12456799999999999999999999983 2233 3455544 3455555554421
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCc--cccc--cccccC-CCC-CCCCcEEEEeeCC
Q 036236 171 FDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWER--VDLT--KVGVPL-PGP-QNTTSKVVFTTRS 232 (557)
Q Consensus 171 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~--~l~~~l-~~~-~~~~s~iliTtR~ 232 (557)
.+..+. .+.+. +.=||||||+... .+|. .+...+ ... ... ..+|+||--
T Consensus 206 -------~~~~~~----l~~l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~-~~ti~TSNl 260 (306)
T PRK08939 206 -------GSVKEK----IDAVK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEE-LPTFFTSNF 260 (306)
T ss_pred -------CcHHHH----HHHhc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCC-CeEEEECCC
Confidence 112222 22222 4558999999532 3343 232222 222 122 457777764
No 255
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.4 Score=48.32 Aligned_cols=152 Identities=16% Similarity=0.170 Sum_probs=81.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc
Q 036236 113 GIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSLR 192 (557)
Q Consensus 113 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 192 (557)
|--.++||||.|||+++.++++.+ .|+.. =+.++...+-.+ ++.++. . .
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L-----~ydIy-dLeLt~v~~n~d-Lr~LL~-----------------------~-t 284 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYL-----NYDIY-DLELTEVKLDSD-LRHLLL-----------------------A-T 284 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhc-----CCceE-EeeeccccCcHH-HHHHHH-----------------------h-C
Confidence 557899999999999999999987 34421 122211111111 222211 1 1
Q ss_pred CCcEEEEEccCCCccc-----------cc---------cccccCCC--CCCCCcEEEE-eeCChHH-----HhcccCCCc
Q 036236 193 EKRFVLLLDDIWERVD-----------LT---------KVGVPLPG--PQNTTSKVVF-TTRSIDV-----CGSMESHRK 244 (557)
Q Consensus 193 ~k~~LlVlDdv~~~~~-----------~~---------~l~~~l~~--~~~~~s~ili-TtR~~~v-----~~~~~~~~~ 244 (557)
..+-+||+.|++-..+ .. -++..+.+ ...|+-|||| ||...+- .+.-..+..
T Consensus 285 ~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmh 364 (457)
T KOG0743|consen 285 PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMH 364 (457)
T ss_pred CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeE
Confidence 2456788888863211 11 01111111 1122246655 6665443 221123445
Q ss_pred eecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHHHHHhcc
Q 036236 245 FPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTIGRAMAC 301 (557)
Q Consensus 245 ~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~ 301 (557)
+.+.-=+.+.-..|+.++++... .+ .+..+|.+...|.-+.=..++..|-.
T Consensus 365 I~mgyCtf~~fK~La~nYL~~~~--~h----~L~~eie~l~~~~~~tPA~V~e~lm~ 415 (457)
T KOG0743|consen 365 IYMGYCTFEAFKTLASNYLGIEE--DH----RLFDEIERLIEETEVTPAQVAEELMK 415 (457)
T ss_pred EEcCCCCHHHHHHHHHHhcCCCC--Cc----chhHHHHHHhhcCccCHHHHHHHHhh
Confidence 78888888999999999987643 11 35556666666655554555554433
No 256
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.85 E-value=0.0066 Score=53.43 Aligned_cols=39 Identities=26% Similarity=0.420 Sum_probs=30.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCcc
Q 036236 114 IIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDL 155 (557)
Q Consensus 114 vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~ 155 (557)
++.|+|++|+|||+++..+..... ..-..++|+......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA---TKGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH---hcCCEEEEEECCcch
Confidence 468999999999999999988872 234567788776554
No 257
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.82 E-value=0.002 Score=70.58 Aligned_cols=47 Identities=21% Similarity=0.378 Sum_probs=38.4
Q ss_pred CcccchhHHHHHHHHHHhc--------cCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 90 PTIVGLQSQLEQVWRCLVV--------EESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~--------~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..++|.++.++.|...+.. +.....+.++|++|+|||.+|+.++...
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999988772 1224578999999999999999998886
No 258
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.80 E-value=0.00046 Score=38.13 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=17.3
Q ss_pred CCcEEEeecCCCCccCCccccCC
Q 036236 499 SLKVLKISNCGNIFQLPVGMSKL 521 (557)
Q Consensus 499 ~L~~L~Ls~~~~~~~lP~~i~~L 521 (557)
+|++|||++| .++.+|++|++|
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT-
T ss_pred CccEEECCCC-cCEeCChhhcCC
Confidence 4788999988 888888887664
No 259
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.79 E-value=0.0055 Score=54.76 Aligned_cols=125 Identities=18% Similarity=0.171 Sum_probs=64.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccC--CC---Ccc--eEEEEEeCCccCHHHHHHHHHHHhCCCCC----CCCCC
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLEN--PI---NFD--CVIWVVVSKDLRLEKIQEDIGKKIGLFDD----SWKSK 178 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~--~~---~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~ 178 (557)
+...+++|+|+.|+|||||.+.+..+.-.+ .. .+. .+.|+ .+ .+.+..+++... .....
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~L 88 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTL 88 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcC
Confidence 356799999999999999999886321000 00 010 12232 11 355666665321 11112
Q ss_pred CH-HHHHHHHHHHhcCC--cEEEEEccCCCc---cccccccccCCCC-CCCCcEEEEeeCChHHHhcccCCCceec
Q 036236 179 SV-EEKAVDIFRSLREK--RFVLLLDDIWER---VDLTKVGVPLPGP-QNTTSKVVFTTRSIDVCGSMESHRKFPV 247 (557)
Q Consensus 179 ~~-~~~~~~l~~~l~~k--~~LlVlDdv~~~---~~~~~l~~~l~~~-~~~~s~iliTtR~~~v~~~~~~~~~~~l 247 (557)
+. +...-.+.+.+-.+ +-++++|+.-.. ...+.+...+... ..+ ..||++|.+...... .++.+.+
T Consensus 89 SgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g-~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 89 SGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLG-NTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred CHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCC-CEEEEEeCCHHHHHh--CCEEEEE
Confidence 22 22333455556666 788999997432 2222222222211 134 668888888766532 3444444
No 260
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.79 E-value=0.0028 Score=56.99 Aligned_cols=37 Identities=24% Similarity=0.500 Sum_probs=29.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEE
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWV 149 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv 149 (557)
....+|.|.|++|+||||+|+.+++.. ...+...+++
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l---~~~~~~~~~~ 41 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERL---KLKYSNVIYL 41 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEE
Confidence 356799999999999999999999987 3344455555
No 261
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.76 E-value=0.0014 Score=64.24 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=25.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..+..++|||++|+|||.+|+.+++..
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 467889999999999999999999997
No 262
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.76 E-value=0.021 Score=55.75 Aligned_cols=89 Identities=17% Similarity=0.159 Sum_probs=55.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCCC---CCCCHHHHHHH
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDSW---KSKSVEEKAVD 186 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~ 186 (557)
+..+++-|+|+.|+||||||..+.... +..-..++|++.....++ ..++.+|.+.+.. .+...++....
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia~~---q~~g~~~a~ID~e~~ld~-----~~a~~lGvdl~rllv~~P~~~E~al~~ 122 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIAEA---QKQGGICAFIDAEHALDP-----EYAESLGVDLDRLLVVQPDTGEQALWI 122 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHH---HHTT-EEEEEESSS---H-----HHHHHTT--GGGEEEEE-SSHHHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHHhh---hcccceeEEecCcccchh-----hHHHhcCccccceEEecCCcHHHHHHH
Confidence 356899999999999999999988876 223457899998877664 3445556554331 23445555555
Q ss_pred HHHHhcCC-cEEEEEccCCCc
Q 036236 187 IFRSLREK-RFVLLLDDIWER 206 (557)
Q Consensus 187 l~~~l~~k-~~LlVlDdv~~~ 206 (557)
+...++.. .-++|+|-|-..
T Consensus 123 ~e~lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 123 AEQLIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHHHHTTSESEEEEE-CTT-
T ss_pred HHHHhhcccccEEEEecCccc
Confidence 55555543 458899998543
No 263
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.75 E-value=0.0067 Score=61.00 Aligned_cols=84 Identities=21% Similarity=0.310 Sum_probs=51.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCCC---CCCCHHHHHHHH
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDSW---KSKSVEEKAVDI 187 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 187 (557)
...++.|.|.+|+|||||+.+++.... .....++|++.... ..++ ..-+..++...+.. ...+.++....+
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a---~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i 154 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLA---KRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASI 154 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHH
Confidence 567999999999999999999988762 22346778765433 3333 22244555443321 122333333333
Q ss_pred HHHhcCCcEEEEEccC
Q 036236 188 FRSLREKRFVLLLDDI 203 (557)
Q Consensus 188 ~~~l~~k~~LlVlDdv 203 (557)
. ..+.-++|+|.+
T Consensus 155 ~---~~~~~lVVIDSI 167 (372)
T cd01121 155 E---ELKPDLVIIDSI 167 (372)
T ss_pred H---hcCCcEEEEcch
Confidence 2 236678999997
No 264
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.73 E-value=0.01 Score=56.13 Aligned_cols=89 Identities=15% Similarity=0.174 Sum_probs=55.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCC---------------
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDS--------------- 174 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--------------- 174 (557)
+...++.|+|.+|+|||+|+.++..... ..-..++|++.... +.++.+.+ .+++.....
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~---~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~ 96 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGAL---KQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTE 96 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHH---hCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEecccc
Confidence 4678999999999999999999866541 23457888888654 44555543 334332211
Q ss_pred ---CCCCCHHHHHHHHHHHhcC-CcEEEEEccCC
Q 036236 175 ---WKSKSVEEKAVDIFRSLRE-KRFVLLLDDIW 204 (557)
Q Consensus 175 ---~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~ 204 (557)
......++....+.+.+.. +.-++|+|.+-
T Consensus 97 ~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 97 GFEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ccccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112334555556565553 55588889863
No 265
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.72 E-value=0.0022 Score=65.62 Aligned_cols=44 Identities=14% Similarity=0.154 Sum_probs=39.6
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..++||++.++.+...+. ....|.|.|++|+|||++|+.+....
T Consensus 20 ~~i~gre~vI~lll~aal---ag~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 20 KGLYERSHAIRLCLLAAL---SGESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hhccCcHHHHHHHHHHHc---cCCCEEEECCCChhHHHHHHHHHHHh
Confidence 468999999999999888 55678999999999999999999876
No 266
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.72 E-value=0.0089 Score=58.89 Aligned_cols=61 Identities=20% Similarity=0.217 Sum_probs=41.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhccc--CCC-CcceEEEEEeCCccCHHHHHHHHHHHhCCC
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLE--NPI-NFDCVIWVVVSKDLRLEKIQEDIGKKIGLF 171 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~--~~~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 171 (557)
....++.|+|.+|+|||+|+..++..... ... .-..++|++....+.... +.++++.++..
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~~~ 157 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYGLN 157 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcCCC
Confidence 36789999999999999999998764311 011 123679999888777765 34455555543
No 267
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.71 E-value=0.0093 Score=55.92 Aligned_cols=125 Identities=17% Similarity=0.158 Sum_probs=73.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCC-----ccCHHHHHHHHHHHhCCCCCC-----CCCCC
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSK-----DLRLEKIQEDIGKKIGLFDDS-----WKSKS 179 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~~~-----~~~~~ 179 (557)
....+++|+|.+|+||||+++.+..-.. .-.+.++..-.. .....+-..++++.+++..+. ..-..
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~----pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSG 112 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEE----PTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSG 112 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcC----CCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCc
Confidence 4678999999999999999999987762 222333332111 222344566677777754321 11222
Q ss_pred HHHHHHHHHHHhcCCcEEEEEccCCCcccc---cccc---ccCCCCCCCCcEEEEeeCChHHHhccc
Q 036236 180 VEEKAVDIFRSLREKRFVLLLDDIWERVDL---TKVG---VPLPGPQNTTSKVVFTTRSIDVCGSME 240 (557)
Q Consensus 180 ~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~---~~l~---~~l~~~~~~~s~iliTtR~~~v~~~~~ 240 (557)
-+...-.+.+.|.-++-++|.|..-+..+. .++. ..+... .+ ...+..|.+-.+...+.
T Consensus 113 GQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~-~~-lt~lFIsHDL~vv~~is 177 (268)
T COG4608 113 GQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEE-LG-LTYLFISHDLSVVRYIS 177 (268)
T ss_pred hhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHH-hC-CeEEEEEEEHHhhhhhc
Confidence 333344567788889999999997543222 1222 222111 23 55677777767666543
No 268
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.70 E-value=0.0089 Score=54.57 Aligned_cols=47 Identities=26% Similarity=0.410 Sum_probs=38.7
Q ss_pred CcccchhHHHHHHHHHHhc---cCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 90 PTIVGLQSQLEQVWRCLVV---EESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~---~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..++|-+...+.|.+--.. +-...-|.+||--|.|||+|++++.+.+
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~ 109 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEY 109 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHH
Confidence 4679999999888875432 3455678999999999999999999987
No 269
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.70 E-value=0.011 Score=60.48 Aligned_cols=89 Identities=21% Similarity=0.197 Sum_probs=52.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCC-ccCHHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHHH
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSK-DLRLEKIQEDIGKKIGLFDDSW-KSKSVEEKAVDIF 188 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 188 (557)
...+|.++|.+|+||||+|..++..+. . ..+ .+.-|++.. .....+.+..++..++.+.... ...+.........
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~-~-~g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFK-K-KGL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-H-cCC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 467999999999999999999988873 2 222 334444332 1223455666777776543211 1223333333333
Q ss_pred HHhcCCcEEEEEccC
Q 036236 189 RSLREKRFVLLLDDI 203 (557)
Q Consensus 189 ~~l~~k~~LlVlDdv 203 (557)
+.+.+. -++|+|..
T Consensus 171 ~~~~~~-DvVIIDTA 184 (437)
T PRK00771 171 EKFKKA-DVIIVDTA 184 (437)
T ss_pred HHhhcC-CEEEEECC
Confidence 444444 56888887
No 270
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.70 E-value=0.0084 Score=59.44 Aligned_cols=60 Identities=22% Similarity=0.330 Sum_probs=42.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCC---CCcceEEEEEeCCccCHHHHHHHHHHHhCC
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENP---INFDCVIWVVVSKDLRLEKIQEDIGKKIGL 170 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 170 (557)
+...++-|+|++|+|||+++.+++....... ..-..++|++....+++..+.+ +++.++.
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g~ 162 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALGL 162 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcCC
Confidence 3678999999999999999999987641111 0114799999988877766543 4455543
No 271
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.69 E-value=0.002 Score=66.91 Aligned_cols=47 Identities=26% Similarity=0.377 Sum_probs=41.1
Q ss_pred CcccchhHHHHHHHHHHhc-----cCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 90 PTIVGLQSQLEQVWRCLVV-----EESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~-----~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..++|.++.+++|++.|.. +...+++.++|++|+||||||+.+++-.
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 3579999999999999842 4567899999999999999999998877
No 272
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.68 E-value=0.0068 Score=54.28 Aligned_cols=88 Identities=22% Similarity=0.163 Sum_probs=45.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCc-cCHHHHHHHHHHHhCCCCCC-CCCCCHHHHHH-HHHHH
Q 036236 114 IIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKD-LRLEKIQEDIGKKIGLFDDS-WKSKSVEEKAV-DIFRS 190 (557)
Q Consensus 114 vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~-~l~~~ 190 (557)
++.++|++|+||||++..++..... .. ..++.++.... ....+.+...+...+.+... ....+..+... .+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~--~g-~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKK--KG-KKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHA 78 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--CC-CcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999887621 11 23344443321 12233344444444432111 12223343332 33333
Q ss_pred hcCCcEEEEEccCC
Q 036236 191 LREKRFVLLLDDIW 204 (557)
Q Consensus 191 l~~k~~LlVlDdv~ 204 (557)
..+..-++|+|..-
T Consensus 79 ~~~~~d~viiDt~g 92 (173)
T cd03115 79 REENFDVVIVDTAG 92 (173)
T ss_pred HhCCCCEEEEECcc
Confidence 34344366677753
No 273
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.67 E-value=0.0075 Score=54.29 Aligned_cols=120 Identities=17% Similarity=0.183 Sum_probs=61.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCC------------CCC
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDS------------WKS 177 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------------~~~ 177 (557)
....+++|.|+.|.|||||++.++..... -.+.+++.-. ++......+...++..... ...
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~----~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~ 98 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDLKP----QQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRR 98 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCCC----CCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhccc
Confidence 35678999999999999999999887521 1233333211 1111111111111110000 011
Q ss_pred CC-HHHHHHHHHHHhcCCcEEEEEccCCCccc---cccccccCCCCCCCCcEEEEeeCChHHHh
Q 036236 178 KS-VEEKAVDIFRSLREKRFVLLLDDIWERVD---LTKVGVPLPGPQNTTSKVVFTTRSIDVCG 237 (557)
Q Consensus 178 ~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---~~~l~~~l~~~~~~~s~iliTtR~~~v~~ 237 (557)
.+ -+...-.+.+.+-.++-+++||+....-+ .+.+...+.....+ ..||++|.+.....
T Consensus 99 LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~-~tii~~sh~~~~~~ 161 (178)
T cd03247 99 FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKD-KTLIWITHHLTGIE 161 (178)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCC-CEEEEEecCHHHHH
Confidence 11 22333345566677888999999754322 22222222211234 67888888776654
No 274
>PRK04328 hypothetical protein; Provisional
Probab=96.65 E-value=0.0079 Score=57.28 Aligned_cols=42 Identities=14% Similarity=0.089 Sum_probs=32.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCc
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKD 154 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~ 154 (557)
+...++.|.|.+|+|||+||.++.... ...-..++|++....
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~~---~~~ge~~lyis~ee~ 62 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGVYVALEEH 62 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHH---HhcCCcEEEEEeeCC
Confidence 367899999999999999999977664 123456788887664
No 275
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.65 E-value=0.014 Score=51.51 Aligned_cols=125 Identities=22% Similarity=0.239 Sum_probs=72.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEE---eC------------------Ccc-------------
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVV---VS------------------KDL------------- 155 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~---~~------------------~~~------------- 155 (557)
+....+.|+|++|.|||||.+.+|.... .-.+.+|+. ++ +++
T Consensus 26 ~~Gef~fl~GpSGAGKSTllkLi~~~e~----pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA 101 (223)
T COG2884 26 PKGEFVFLTGPSGAGKSTLLKLIYGEER----PTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVA 101 (223)
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhhhc----CCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhh
Confidence 4667899999999999999999998852 122344442 00 000
Q ss_pred --------CHHHHH---HHHHHHhCCCCCC----CCCCCHHHHHHHHHHHhcCCcEEEEEccC----CCccccccccccC
Q 036236 156 --------RLEKIQ---EDIGKKIGLFDDS----WKSKSVEEKAVDIFRSLREKRFVLLLDDI----WERVDLTKVGVPL 216 (557)
Q Consensus 156 --------~~~~~~---~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVlDdv----~~~~~~~~l~~~l 216 (557)
...++. .+.++..++.... ..-..-++..-.+.+.+-+++-+|+-|.- +.+..|+ +...|
T Consensus 102 ~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~-im~lf 180 (223)
T COG2884 102 LPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWE-IMRLF 180 (223)
T ss_pred hhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHH-HHHHH
Confidence 112222 2233333332211 12233445556677888889999999974 2222333 22333
Q ss_pred CCCCCCCcEEEEeeCChHHHhcc
Q 036236 217 PGPQNTTSKVVFTTRSIDVCGSM 239 (557)
Q Consensus 217 ~~~~~~~s~iliTtR~~~v~~~~ 239 (557)
...+.-|+.|+++|.+..+...+
T Consensus 181 eeinr~GtTVl~ATHd~~lv~~~ 203 (223)
T COG2884 181 EEINRLGTTVLMATHDLELVNRM 203 (223)
T ss_pred HHHhhcCcEEEEEeccHHHHHhc
Confidence 33233348899999998876655
No 276
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.62 E-value=0.11 Score=50.72 Aligned_cols=168 Identities=14% Similarity=0.072 Sum_probs=91.2
Q ss_pred HHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcc-------cCCCCcceEEEEEe-CCccCHHHHHHHHHHHhCC
Q 036236 99 LEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFL-------ENPINFDCVIWVVV-SKDLRLEKIQEDIGKKIGL 170 (557)
Q Consensus 99 ~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~-------~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~ 170 (557)
++.+.+.+..+.-.++..++|..|+||+++|..+.+..- ....+.+...++.. +......++. ++.+.+..
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~ 83 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYF 83 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhcc
Confidence 344555555334556777999999999999999987751 11112222333321 1122222222 23332221
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCccc--cccccccCCCCCCCCcEEEEeeCCh-HHHh-cccCCCcee
Q 036236 171 FDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWERVD--LTKVGVPLPGPQNTTSKVVFTTRSI-DVCG-SMESHRKFP 246 (557)
Q Consensus 171 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--~~~l~~~l~~~~~~~s~iliTtR~~-~v~~-~~~~~~~~~ 246 (557)
.. .-.+.+=++|+|+++.... ...+...+...... +.+|++|.+. .+.. .......++
T Consensus 84 ~~-----------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~-t~~il~~~~~~kll~TI~SRc~~~~ 145 (299)
T PRK07132 84 SS-----------------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKD-TYFLLTTKNINKVLPTIVSRCQVFN 145 (299)
T ss_pred CC-----------------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCC-eEEEEEeCChHhChHHHHhCeEEEE
Confidence 11 0014666888999864432 33454455443344 6666655543 3332 234467899
Q ss_pred cCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHH
Q 036236 247 VACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLT 294 (557)
Q Consensus 247 l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~ 294 (557)
+.++++++..+.+... +. + .+.+..++...+|.=-|+..
T Consensus 146 f~~l~~~~l~~~l~~~-~~-----~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 146 VKEPDQQKILAKLLSK-NK-----E---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred CCCCCHHHHHHHHHHc-CC-----C---hhHHHHHHHHcCCHHHHHHH
Confidence 9999999998877654 21 1 13455666666763244444
No 277
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.62 E-value=0.044 Score=53.90 Aligned_cols=49 Identities=24% Similarity=0.216 Sum_probs=35.9
Q ss_pred ceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHH
Q 036236 244 KFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLAL 292 (557)
Q Consensus 244 ~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai 292 (557)
++++++++.+|+..++.-+............+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999999887655543332333456677777789999654
No 278
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.60 E-value=0.003 Score=57.87 Aligned_cols=109 Identities=14% Similarity=0.127 Sum_probs=58.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHH-HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 036236 113 GIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLE-KIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSL 191 (557)
Q Consensus 113 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 191 (557)
.+|.|.|+.|.||||++..+..... ......++. +..+.... .-...+..+-. ...+.......+...+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~---~~~~~~i~t-~e~~~E~~~~~~~~~i~q~~------vg~~~~~~~~~i~~aL 71 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYIN---KNKTHHILT-IEDPIEFVHESKRSLINQRE------VGLDTLSFENALKAAL 71 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh---hcCCcEEEE-EcCCccccccCccceeeecc------cCCCccCHHHHHHHHh
Confidence 4789999999999999999887762 222333332 11111100 00000110000 0111223445667777
Q ss_pred cCCcEEEEEccCCCccccccccccCCCCCCCCcEEEEeeCChHH
Q 036236 192 REKRFVLLLDDIWERVDLTKVGVPLPGPQNTTSKVVFTTRSIDV 235 (557)
Q Consensus 192 ~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~s~iliTtR~~~v 235 (557)
+..+=++++|++.+.+......... ..| ..++.|+.....
T Consensus 72 r~~pd~ii~gEird~e~~~~~l~~a---~~G-~~v~~t~Ha~~~ 111 (198)
T cd01131 72 RQDPDVILVGEMRDLETIRLALTAA---ETG-HLVMSTLHTNSA 111 (198)
T ss_pred cCCcCEEEEcCCCCHHHHHHHHHHH---HcC-CEEEEEecCCcH
Confidence 7778899999997655444332221 223 457777776544
No 279
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.59 E-value=0.0087 Score=53.97 Aligned_cols=121 Identities=21% Similarity=0.263 Sum_probs=66.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEE---eCCccCHHH------HHHHHHHHhCCCCC---CCCC
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVV---VSKDLRLEK------IQEDIGKKIGLFDD---SWKS 177 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~---~~~~~~~~~------~~~~i~~~l~~~~~---~~~~ 177 (557)
....+++|.|+.|.|||||++.++.... ...+.+++. +.. .+... ...++++.+++... ....
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~~----~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~ 97 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLLK----PSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNE 97 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCccc
Confidence 3667999999999999999999988652 223334432 211 11111 11224555554321 1111
Q ss_pred CC-HHHHHHHHHHHhcCCcEEEEEccCCCcc---ccccccccCCCC-CC-CCcEEEEeeCChHHH
Q 036236 178 KS-VEEKAVDIFRSLREKRFVLLLDDIWERV---DLTKVGVPLPGP-QN-TTSKVVFTTRSIDVC 236 (557)
Q Consensus 178 ~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~~~l~~~l~~~-~~-~~s~iliTtR~~~v~ 236 (557)
.+ -+...-.+.+.+-..+-++++|+.-..- ....+...+... .. + ..||++|.+....
T Consensus 98 LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~-~tiii~sh~~~~~ 161 (180)
T cd03214 98 LSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERG-KTVVMVLHDLNLA 161 (180)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHH
Confidence 22 2333444666677788899999974322 222222222211 12 3 6788888876654
No 280
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.0077 Score=57.32 Aligned_cols=81 Identities=17% Similarity=0.172 Sum_probs=48.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCC--CCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENP--INFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIF 188 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~--~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 188 (557)
-.++|.++|++|.|||+|+++++++. .++ ..+....-+.++. ..++.+.... ...-......++.
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkL-SIR~~~~y~~~~liEins----hsLFSKWFsE--------SgKlV~kmF~kI~ 242 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKL-SIRTNDRYYKGQLIEINS----HSLFSKWFSE--------SGKLVAKMFQKIQ 242 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhh-eeeecCccccceEEEEeh----hHHHHHHHhh--------hhhHHHHHHHHHH
Confidence 35899999999999999999999997 322 2222223333322 2333333221 2233445556666
Q ss_pred HHhcCCc--EEEEEccCC
Q 036236 189 RSLREKR--FVLLLDDIW 204 (557)
Q Consensus 189 ~~l~~k~--~LlVlDdv~ 204 (557)
+.+.++. +++.+|.|.
T Consensus 243 ELv~d~~~lVfvLIDEVE 260 (423)
T KOG0744|consen 243 ELVEDRGNLVFVLIDEVE 260 (423)
T ss_pred HHHhCCCcEEEEEeHHHH
Confidence 6666654 455679885
No 281
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.58 E-value=0.018 Score=57.14 Aligned_cols=61 Identities=20% Similarity=0.251 Sum_probs=43.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhccc--CC-CCcceEEEEEeCCccCHHHHHHHHHHHhCCC
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLE--NP-INFDCVIWVVVSKDLRLEKIQEDIGKKIGLF 171 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~--~~-~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 171 (557)
....++-|+|.+|+|||+|+..++-.... .. ..-..++|++....+.+..+ .++++.++..
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~ 184 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLN 184 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCC
Confidence 35788999999999999999987754311 01 12237999999998888765 4556666654
No 282
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.57 E-value=0.0088 Score=59.80 Aligned_cols=89 Identities=22% Similarity=0.297 Sum_probs=52.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCC-ccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSK-DLRLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFR 189 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 189 (557)
...+++++|+.|+||||++..+..... .......+..++... .....+-++...+.++.+... ..+..+....+ .
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~-~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~--~~~~~~l~~~l-~ 211 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCV-MRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHA--VKDGGDLQLAL-A 211 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH-HhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEe--cCCcccHHHHH-H
Confidence 467999999999999999999988751 111223455565433 223456666777777765422 11222222222 3
Q ss_pred HhcCCcEEEEEccCC
Q 036236 190 SLREKRFVLLLDDIW 204 (557)
Q Consensus 190 ~l~~k~~LlVlDdv~ 204 (557)
.+.++ -++++|..-
T Consensus 212 ~l~~~-DlVLIDTaG 225 (374)
T PRK14722 212 ELRNK-HMVLIDTIG 225 (374)
T ss_pred HhcCC-CEEEEcCCC
Confidence 34454 456699984
No 283
>PRK12678 transcription termination factor Rho; Provisional
Probab=96.55 E-value=0.0029 Score=65.47 Aligned_cols=100 Identities=23% Similarity=0.255 Sum_probs=55.5
Q ss_pred HHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEE-EEeCCcc-CHHHHHHHHHHHhCCCCCCCCCC
Q 036236 101 QVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIW-VVVSKDL-RLEKIQEDIGKKIGLFDDSWKSK 178 (557)
Q Consensus 101 ~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~w-v~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~ 178 (557)
.++++|..-+...-.+|+|++|+|||||++.+++... ..+.++.++ +-+.... .+.++.+.+-..+-.. .++..
T Consensus 405 RvIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~--~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVas--T~D~p 480 (672)
T PRK12678 405 RVIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAIT--TNNPECHLMVVLVDERPEEVTDMQRSVKGEVIAS--TFDRP 480 (672)
T ss_pred eeeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHh--hcCCCeEEEEEEEeCchhhHHHHHHhccceEEEE--CCCCC
Confidence 4555555445677899999999999999999998762 234444433 3444433 2333333321111000 00111
Q ss_pred -----CHHHHHHHHHHHh--cCCcEEEEEccCC
Q 036236 179 -----SVEEKAVDIFRSL--REKRFVLLLDDIW 204 (557)
Q Consensus 179 -----~~~~~~~~l~~~l--~~k~~LlVlDdv~ 204 (557)
......-.+.+++ .++.+||++|++-
T Consensus 481 ~~~~~~~a~~ai~~Ae~fre~G~dVlillDSlT 513 (672)
T PRK12678 481 PSDHTTVAELAIERAKRLVELGKDVVVLLDSIT 513 (672)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCch
Confidence 1112223334444 6799999999983
No 284
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.53 E-value=0.0078 Score=53.87 Aligned_cols=104 Identities=15% Similarity=0.137 Sum_probs=57.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEE------eCCccCHHHHHHHHHHHhCCCCCCCCCCCHHHH
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVV------VSKDLRLEKIQEDIGKKIGLFDDSWKSKSVEEK 183 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~------~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 183 (557)
+...+++|.|+.|.|||||++.+..-.. ...+.+++. +.+... -..-+..
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~----p~~G~i~~~g~~i~~~~q~~~--------------------LSgGq~q 78 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLI----PNGDNDEWDGITPVYKPQYID--------------------LSGGELQ 78 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCC----CCCcEEEECCEEEEEEcccCC--------------------CCHHHHH
Confidence 4667999999999999999999987652 122233221 111100 1112233
Q ss_pred HHHHHHHhcCCcEEEEEccCCCccc---cccccccCCCC-CCCCcEEEEeeCChHHHh
Q 036236 184 AVDIFRSLREKRFVLLLDDIWERVD---LTKVGVPLPGP-QNTTSKVVFTTRSIDVCG 237 (557)
Q Consensus 184 ~~~l~~~l~~k~~LlVlDdv~~~~~---~~~l~~~l~~~-~~~~s~iliTtR~~~v~~ 237 (557)
.-.+.+.+..++-++++|+--..-+ ...+...+... ..++..||++|.+.....
T Consensus 79 rv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 79 RVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred HHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 4445666777888999999743222 12222222111 111145777777765544
No 285
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.53 E-value=0.0019 Score=57.24 Aligned_cols=96 Identities=21% Similarity=0.260 Sum_probs=68.2
Q ss_pred eEEEccccccccccCC-CCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCccccC-CCCCCeeeccC
Q 036236 454 RRLSLMQNQIETLSEV-PTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVGMSK-LGSLELLDISH 531 (557)
Q Consensus 454 ~~l~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~i~~-L~~L~~L~l~~ 531 (557)
+.+++.+..+...... ........++|++|. +..++. |..++.|..|.|++| .|+.+-+.++. +.+|..|.|.+
T Consensus 22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNd-l~~l~~--lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 22 RELDLRGLKIPVIENLGATLDQFDAIDLTDND-LRKLDN--LPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred cccccccccccchhhccccccccceecccccc-hhhccc--CCCccccceEEecCC-cceeeccchhhhccccceEEecC
Confidence 3444444444333222 334567889999998 777776 888999999999999 99999666655 46799999999
Q ss_pred CCCcccCh--HHHhHhhhhhcCCC
Q 036236 532 TFIKELPE--ELKKLLEAIQRAPR 553 (557)
Q Consensus 532 n~l~~lP~--~i~~L~~L~~L~~~ 553 (557)
|+|.+|-. .+..+++|++|.+-
T Consensus 98 Nsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 98 NSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred cchhhhhhcchhccCCccceeeec
Confidence 99887632 35566677755443
No 286
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.53 E-value=0.011 Score=60.34 Aligned_cols=92 Identities=21% Similarity=0.193 Sum_probs=50.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCc-cCHHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHHH
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKD-LRLEKIQEDIGKKIGLFDDSW-KSKSVEEKAVDIF 188 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 188 (557)
...++.++|.+|+||||+|..++..... ...+ .+.-|++... +...+-+.......+.+.... ...++.+......
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~-~~g~-kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al 175 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKK-KQGK-KVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRAL 175 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHH-hCCC-eEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHH
Confidence 3679999999999999999988877511 1122 3444443321 122344455566665542211 1233444444444
Q ss_pred HHhcCCcE-EEEEccCC
Q 036236 189 RSLREKRF-VLLLDDIW 204 (557)
Q Consensus 189 ~~l~~k~~-LlVlDdv~ 204 (557)
+....+.+ ++|+|-.-
T Consensus 176 ~~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 176 EYAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHHhcCCCEEEEeCCC
Confidence 44434444 77778763
No 287
>PRK10867 signal recognition particle protein; Provisional
Probab=96.53 E-value=0.011 Score=60.42 Aligned_cols=91 Identities=18% Similarity=0.220 Sum_probs=46.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCc-cCHHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHHH
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKD-LRLEKIQEDIGKKIGLFDDSW-KSKSVEEKAVDIF 188 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 188 (557)
...+|.++|++|+||||++..++..+. .. .-..+..|+.... +...+-++..++..+.+.-.. ...+.........
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~-~~-~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~ 176 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLK-KK-KKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAAL 176 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH-Hh-cCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHH
Confidence 468999999999999999888887662 11 1123444443321 112233444555555432111 1223344443333
Q ss_pred HHhcCCcE-EEEEccC
Q 036236 189 RSLREKRF-VLLLDDI 203 (557)
Q Consensus 189 ~~l~~k~~-LlVlDdv 203 (557)
+..+.+.+ ++|+|-.
T Consensus 177 ~~a~~~~~DvVIIDTa 192 (433)
T PRK10867 177 EEAKENGYDVVIVDTA 192 (433)
T ss_pred HHHHhcCCCEEEEeCC
Confidence 33333333 5666655
No 288
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.52 E-value=0.016 Score=52.97 Aligned_cols=83 Identities=17% Similarity=0.119 Sum_probs=45.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCCCcc---eEEEEEeCCccCHHHHHHHHHHH-hCCCCCCCCCCCHHHHHHHHHH
Q 036236 114 IIGLYGMGGVGKTTLLTHINNKFLENPINFD---CVIWVVVSKDLRLEKIQEDIGKK-IGLFDDSWKSKSVEEKAVDIFR 189 (557)
Q Consensus 114 vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~---~~~wv~~~~~~~~~~~~~~i~~~-l~~~~~~~~~~~~~~~~~~l~~ 189 (557)
+|+|.|++|+||||+|+.+...+.. .... ....+..............-... -..........+.+.+.+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~--~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~ 78 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK--RGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKA 78 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT--CTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc--cCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHHHH
Confidence 6999999999999999999998831 2222 23333333322222222221110 0111122245566677777776
Q ss_pred HhcCCcEEE
Q 036236 190 SLREKRFVL 198 (557)
Q Consensus 190 ~l~~k~~Ll 198 (557)
..+++.+-+
T Consensus 79 L~~g~~i~~ 87 (194)
T PF00485_consen 79 LKNGGSIEI 87 (194)
T ss_dssp HHTTSCEEE
T ss_pred HhCCCcccc
Confidence 666665433
No 289
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.51 E-value=0.003 Score=53.95 Aligned_cols=26 Identities=42% Similarity=0.460 Sum_probs=23.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...-|+|.|++|+||||+++.+.+..
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHH
Confidence 34568999999999999999999887
No 290
>PRK07667 uridine kinase; Provisional
Probab=96.50 E-value=0.0035 Score=57.20 Aligned_cols=38 Identities=21% Similarity=0.413 Sum_probs=30.3
Q ss_pred HHHHHHHHhc-cCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 99 LEQVWRCLVV-EESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 99 ~~~l~~~L~~-~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
.+.|.+.+.. .+...+|+|.|.+|+||||+|+.+....
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4556666653 3456899999999999999999999887
No 291
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.50 E-value=0.018 Score=55.16 Aligned_cols=128 Identities=17% Similarity=0.115 Sum_probs=67.3
Q ss_pred HHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhC-CCCCCC--
Q 036236 99 LEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIG-LFDDSW-- 175 (557)
Q Consensus 99 ~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~-~~~~~~-- 175 (557)
.+.++..+...+....++|+|+.|.|||||.+.+..... ...+.+++.-.. ....+-..++..... .+....
T Consensus 98 ~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~----~~~G~i~~~g~~-v~~~d~~~ei~~~~~~~~q~~~~~ 172 (270)
T TIGR02858 98 ADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILS----TGISQLGLRGKK-VGIVDERSEIAGCVNGVPQHDVGI 172 (270)
T ss_pred HHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccC----CCCceEEECCEE-eecchhHHHHHHHhcccccccccc
Confidence 344455554345567899999999999999999998862 222333332100 000011123322221 111110
Q ss_pred --CCCCHHHHHHHHHHHhc-CCcEEEEEccCCCccccccccccCCCCCCCCcEEEEeeCChHH
Q 036236 176 --KSKSVEEKAVDIFRSLR-EKRFVLLLDDIWERVDLTKVGVPLPGPQNTTSKVVFTTRSIDV 235 (557)
Q Consensus 176 --~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~s~iliTtR~~~v 235 (557)
+..+.......+...+. -.+-++++|.+.....+..+...+. .| ..+|+||....+
T Consensus 173 r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G-~~vI~ttH~~~~ 231 (270)
T TIGR02858 173 RTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AG-VSIIATAHGRDV 231 (270)
T ss_pred cccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CC-CEEEEEechhHH
Confidence 00111111223333333 4788999999866555555444432 34 679999987555
No 292
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.49 E-value=0.0039 Score=55.20 Aligned_cols=116 Identities=18% Similarity=0.194 Sum_probs=62.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCc--cCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHH
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKD--LRLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDI 187 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l 187 (557)
....+++|.|+.|.|||||.+.++... ....+.+++.-..- .+.... ....++... .-..-+...-.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~~~---~~~~i~~~~---qLS~G~~qrl~l 93 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLY----KPDSGEILVDGKEVSFASPRDA---RRAGIAMVY---QLSVGERQMVEI 93 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEECCcCCHHHH---HhcCeEEEE---ecCHHHHHHHHH
Confidence 356799999999999999999998775 22334444432111 111111 111111110 112223344456
Q ss_pred HHHhcCCcEEEEEccCCCccc---cccccccCCCC-CCCCcEEEEeeCChHHH
Q 036236 188 FRSLREKRFVLLLDDIWERVD---LTKVGVPLPGP-QNTTSKVVFTTRSIDVC 236 (557)
Q Consensus 188 ~~~l~~k~~LlVlDdv~~~~~---~~~l~~~l~~~-~~~~s~iliTtR~~~v~ 236 (557)
.+.+-.++-++++|+.-..-+ ...+...+... ..+ ..||++|.+....
T Consensus 94 aral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~-~tiii~sh~~~~~ 145 (163)
T cd03216 94 ARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQG-VAVIFISHRLDEV 145 (163)
T ss_pred HHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCC-CEEEEEeCCHHHH
Confidence 666777888999999743222 22222222211 123 6688888876643
No 293
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.49 E-value=0.014 Score=53.71 Aligned_cols=125 Identities=18% Similarity=0.198 Sum_probs=71.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEe----------------------CCcc------------
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVV----------------------SKDL------------ 155 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~----------------------~~~~------------ 155 (557)
.....|+|+|++|+|||||...+..-.. .-.+.+++.. -+.+
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLniig~ld~----pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv 104 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLLGGLDK----PTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENV 104 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccC----CCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHH
Confidence 3567999999999999999998764421 1112222210 1111
Q ss_pred ------------CHHHHHHHHHHHhCCCCC-----CCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCc---ccccccccc
Q 036236 156 ------------RLEKIQEDIGKKIGLFDD-----SWKSKSVEEKAVDIFRSLREKRFVLLLDDIWER---VDLTKVGVP 215 (557)
Q Consensus 156 ------------~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---~~~~~l~~~ 215 (557)
........+++.+++... ...-..-++..-.+.+.|-..+-+|+.|+--.. ..-..+...
T Consensus 105 ~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~l 184 (226)
T COG1136 105 ELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLEL 184 (226)
T ss_pred HhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHH
Confidence 112334555666565421 112233445556778888899999999985211 111222222
Q ss_pred CCCC--CCCCcEEEEeeCChHHHhcc
Q 036236 216 LPGP--QNTTSKVVFTTRSIDVCGSM 239 (557)
Q Consensus 216 l~~~--~~~~s~iliTtR~~~v~~~~ 239 (557)
+... ..+ ..||+.|.++.++...
T Consensus 185 l~~~~~~~g-~tii~VTHd~~lA~~~ 209 (226)
T COG1136 185 LRELNKERG-KTIIMVTHDPELAKYA 209 (226)
T ss_pred HHHHHHhcC-CEEEEEcCCHHHHHhC
Confidence 2211 123 6899999999998754
No 294
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.017 Score=57.12 Aligned_cols=94 Identities=22% Similarity=0.336 Sum_probs=59.5
Q ss_pred HHHHHHHhccC--CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCCC--
Q 036236 100 EQVWRCLVVEE--SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDSW-- 175 (557)
Q Consensus 100 ~~l~~~L~~~~--~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-- 175 (557)
.++.+.|. .+ ...+|.|-|.+|||||||.-+++.+.+. . . .+++|+-.+. ..+ .+--++.|+.+.+..
T Consensus 80 ~EldRVLG-GG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~-~-~--~vLYVsGEES--~~Q-iklRA~RL~~~~~~l~l 151 (456)
T COG1066 80 EELDRVLG-GGLVPGSVILIGGDPGIGKSTLLLQVAARLAK-R-G--KVLYVSGEES--LQQ-IKLRADRLGLPTNNLYL 151 (456)
T ss_pred HHHHhhhc-CCcccccEEEEccCCCCCHHHHHHHHHHHHHh-c-C--cEEEEeCCcC--HHH-HHHHHHHhCCCccceEE
Confidence 34444444 22 5679999999999999999999999832 2 2 6777765443 332 233455666544331
Q ss_pred -CCCCHHHHHHHHHHHhcCCcEEEEEccCC
Q 036236 176 -KSKSVEEKAVDIFRSLREKRFVLLLDDIW 204 (557)
Q Consensus 176 -~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 204 (557)
...+.++..+.+.+ .++-++|+|-+.
T Consensus 152 ~aEt~~e~I~~~l~~---~~p~lvVIDSIQ 178 (456)
T COG1066 152 LAETNLEDIIAELEQ---EKPDLVVIDSIQ 178 (456)
T ss_pred ehhcCHHHHHHHHHh---cCCCEEEEeccc
Confidence 23444444444433 578899999984
No 295
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.042 Score=57.94 Aligned_cols=171 Identities=20% Similarity=0.232 Sum_probs=90.0
Q ss_pred cccchhHHHHHHHHHHhc---------c---CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHH
Q 036236 91 TIVGLQSQLEQVWRCLVV---------E---ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLE 158 (557)
Q Consensus 91 ~~vGr~~~~~~l~~~L~~---------~---~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 158 (557)
.+-|..+.++.+.+.+.- . .-..-|.++|++|+|||-||.+++... . .-+|++.++
T Consensus 668 digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~---~-----~~fisvKGP---- 735 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS---N-----LRFISVKGP---- 735 (952)
T ss_pred ecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC---C-----eeEEEecCH----
Confidence 345666666666666551 1 123458899999999999999998876 1 234555543
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHH-HHhcCCcEEEEEccCCCc-------------cccccccccCCCCC--CC
Q 036236 159 KIQEDIGKKIGLFDDSWKSKSVEEKAVDIF-RSLREKRFVLLLDDIWER-------------VDLTKVGVPLPGPQ--NT 222 (557)
Q Consensus 159 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~-------------~~~~~l~~~l~~~~--~~ 222 (557)
+++... +| .+ ++..+.+. +.-.-++|+|.+|.+++. ....+++..+.+.. .|
T Consensus 736 ElL~Ky---IG--------aS-Eq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~G 803 (952)
T KOG0735|consen 736 ELLSKY---IG--------AS-EQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDG 803 (952)
T ss_pred HHHHHH---hc--------cc-HHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccce
Confidence 233322 22 12 23333343 334569999999998642 11233434443321 23
Q ss_pred CcEEEEeeCChHH-----HhcccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCch
Q 036236 223 TSKVVFTTRSIDV-----CGSMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPL 290 (557)
Q Consensus 223 ~s~iliTtR~~~v-----~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 290 (557)
.-|+..|..+++ .+.-.-++.+.-+.-++.+-.++|.............+ .+.++.+++|.--
T Consensus 804 -V~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vd----l~~~a~~T~g~tg 871 (952)
T KOG0735|consen 804 -VYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVD----LECLAQKTDGFTG 871 (952)
T ss_pred -EEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccc----hHHHhhhcCCCch
Confidence 555544433333 11111223333344456666677766554332222222 3456666666543
No 296
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.48 E-value=0.013 Score=51.67 Aligned_cols=118 Identities=18% Similarity=0.158 Sum_probs=60.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcce--EEEEEeCCccCHHHHHHHHHHHhCCC--CC--CCCCCC-----
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDC--VIWVVVSKDLRLEKIQEDIGKKIGLF--DD--SWKSKS----- 179 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~--~~wv~~~~~~~~~~~~~~i~~~l~~~--~~--~~~~~~----- 179 (557)
....|-|++..|.||||.|..++-+.. ...+.. +-|+.-.........++.+ .+... .. .+...+
T Consensus 4 ~~Gli~v~~g~GkGKtt~a~g~a~ra~--~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~ 79 (173)
T TIGR00708 4 ERGIIIVHTGNGKGKTTAAFGMALRAL--GHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADT 79 (173)
T ss_pred cccEEEEECCCCCChHHHHHHHHHHHH--HCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHH
Confidence 346788888899999999998877762 222322 1233333223333344332 11000 00 011111
Q ss_pred --HHHHHHHHHHHhcCC-cEEEEEccCCCc-----cccccccccCCCCCCCCcEEEEeeCCh
Q 036236 180 --VEEKAVDIFRSLREK-RFVLLLDDIWER-----VDLTKVGVPLPGPQNTTSKVVFTTRSI 233 (557)
Q Consensus 180 --~~~~~~~l~~~l~~k-~~LlVlDdv~~~-----~~~~~l~~~l~~~~~~~s~iliTtR~~ 233 (557)
..+.....++.+... -=|+|||.+-.. -+.+.+...+.....+ ..||+|-|+.
T Consensus 80 ~~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~-~evVlTGR~~ 140 (173)
T TIGR00708 80 AIAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGH-QHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCC-CEEEEECCCC
Confidence 111222333444444 449999998422 2233444444333344 7899999985
No 297
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.47 E-value=0.0099 Score=54.15 Aligned_cols=26 Identities=38% Similarity=0.607 Sum_probs=24.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
++.+|+|.|.+|+||||+|+.++..+
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~ 32 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQL 32 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999999998
No 298
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.47 E-value=0.02 Score=53.81 Aligned_cols=42 Identities=29% Similarity=0.288 Sum_probs=31.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCc
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKD 154 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~ 154 (557)
+...++.|.|.+|+|||+++.++..... ..-..++|++....
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~~---~~g~~~~~is~e~~ 59 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKGL---RDGDPVIYVTTEES 59 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHHH---hcCCeEEEEEccCC
Confidence 3678999999999999999999776541 12346788876443
No 299
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.47 E-value=0.012 Score=57.04 Aligned_cols=88 Identities=23% Similarity=0.282 Sum_probs=49.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCcc-CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDL-RLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFR 189 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 189 (557)
..++++|+|++|+||||++..++.... ....-..+..++..... .....+....+.++.+.. ...+..+....+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~-~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~--~~~~~~~l~~~l~- 268 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFV-LEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK--VARDPKELRKALD- 268 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee--ccCCHHHHHHHHH-
Confidence 457999999999999999999887762 11111245556544321 223344445555555432 1223334433333
Q ss_pred HhcCCcEEEEEccC
Q 036236 190 SLREKRFVLLLDDI 203 (557)
Q Consensus 190 ~l~~k~~LlVlDdv 203 (557)
.+.+ .=+|++|..
T Consensus 269 ~~~~-~d~vliDt~ 281 (282)
T TIGR03499 269 RLRD-KDLILIDTA 281 (282)
T ss_pred HccC-CCEEEEeCC
Confidence 3333 347777753
No 300
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.46 E-value=0.013 Score=55.95 Aligned_cols=89 Identities=22% Similarity=0.220 Sum_probs=57.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHH-hCCCCCCCCCCCHH---HHHH
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKK-IGLFDDSWKSKSVE---EKAV 185 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~-l~~~~~~~~~~~~~---~~~~ 185 (557)
+..+++=|+|+.|.||||+|.+++-.. +.....++|++..+.+++..+.. ++.. +..-. -....+.+ +.+.
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~a---q~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~-v~~~~~~e~q~~i~~ 132 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVANA---QKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLL-VSQPDTGEQQLEIAE 132 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHHh---hcCCCeEEEEeCCCCCCHHHHHH-HHHhhhccee-EecCCCHHHHHHHHH
Confidence 477899999999999999999987776 34444899999999888765433 3333 21100 01222333 3334
Q ss_pred HHHHHhcCCcEEEEEccC
Q 036236 186 DIFRSLREKRFVLLLDDI 203 (557)
Q Consensus 186 ~l~~~l~~k~~LlVlDdv 203 (557)
.+.+....+--|+|+|.+
T Consensus 133 ~~~~~~~~~i~LvVVDSv 150 (279)
T COG0468 133 KLARSGAEKIDLLVVDSV 150 (279)
T ss_pred HHHHhccCCCCEEEEecC
Confidence 444444444569999987
No 301
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.46 E-value=0.0017 Score=59.99 Aligned_cols=83 Identities=25% Similarity=0.182 Sum_probs=59.6
Q ss_pred CCCCccEEEcccccccccccchHhhcCCCCcEEEeecC--CCCccCCccccCCCCCCeeeccCCCCcccC--hHHHhHhh
Q 036236 471 TCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNC--GNIFQLPVGMSKLGSLELLDISHTFIKELP--EELKKLLE 546 (557)
Q Consensus 471 ~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~--~~~~~lP~~i~~L~~L~~L~l~~n~l~~lP--~~i~~L~~ 546 (557)
.+..|..|.+.+.. +.++.. |..|++|+.|++|.| +-...++...-++++|++|+|++|+|+.+- ..+.+|.+
T Consensus 41 ~~~~le~ls~~n~g-ltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 41 EFVELELLSVINVG-LTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred cccchhhhhhhccc-eeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 44556666666555 444433 677899999999999 444567777777799999999999988632 23567777
Q ss_pred hhhcCCCCCC
Q 036236 547 AIQRAPRPDR 556 (557)
Q Consensus 547 L~~L~~~~~~ 556 (557)
|..|++..++
T Consensus 118 L~~Ldl~n~~ 127 (260)
T KOG2739|consen 118 LKSLDLFNCS 127 (260)
T ss_pred hhhhhcccCC
Confidence 8888887664
No 302
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.46 E-value=0.0093 Score=55.15 Aligned_cols=27 Identities=37% Similarity=0.405 Sum_probs=23.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
....+++|+|..|.|||||++.+....
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367799999999999999999998764
No 303
>PTZ00035 Rad51 protein; Provisional
Probab=96.46 E-value=0.031 Score=55.58 Aligned_cols=70 Identities=23% Similarity=0.186 Sum_probs=45.0
Q ss_pred HHHHHHhcc-CCeeEEEEEcCCCCcHHHHHHHHHhhccc---CCCCcceEEEEEeCCccCHHHHHHHHHHHhCCC
Q 036236 101 QVWRCLVVE-ESVGIIGLYGMGGVGKTTLLTHINNKFLE---NPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLF 171 (557)
Q Consensus 101 ~l~~~L~~~-~~~~vv~I~G~~GiGKTtLa~~v~~~~~~---~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 171 (557)
.|-+.|... +...++.|+|.+|+|||+|+..++-.... ....-..++|++....++... +.++++.++..
T Consensus 106 ~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g~~ 179 (337)
T PTZ00035 106 QLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFGLD 179 (337)
T ss_pred HHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhCCC
Confidence 344444421 36789999999999999999988755410 011223677999877777666 34445555543
No 304
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.46 E-value=0.012 Score=50.83 Aligned_cols=105 Identities=23% Similarity=0.274 Sum_probs=58.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFR 189 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 189 (557)
....+++|.|..|.|||||++.+..... ...+.+++.-.. .++... .-..-+...-.+.+
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~----~~~G~i~~~~~~-------------~i~~~~---~lS~G~~~rv~lar 83 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGELE----PDEGIVTWGSTV-------------KIGYFE---QLSGGEKMRLALAK 83 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCC----CCceEEEECCeE-------------EEEEEc---cCCHHHHHHHHHHH
Confidence 3567999999999999999999988752 223444432100 000000 01112233344566
Q ss_pred HhcCCcEEEEEccCCCc---cccccccccCCCCCCCCcEEEEeeCChHHHh
Q 036236 190 SLREKRFVLLLDDIWER---VDLTKVGVPLPGPQNTTSKVVFTTRSIDVCG 237 (557)
Q Consensus 190 ~l~~k~~LlVlDdv~~~---~~~~~l~~~l~~~~~~~s~iliTtR~~~v~~ 237 (557)
.+..++-++++|+.-.. .....+...+... + ..||++|.+.....
T Consensus 84 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~-~til~~th~~~~~~ 131 (144)
T cd03221 84 LLLENPNLLLLDEPTNHLDLESIEALEEALKEY--P-GTVILVSHDRYFLD 131 (144)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--C-CEEEEEECCHHHHH
Confidence 66777889999997432 2222222222222 2 45778887765543
No 305
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.45 E-value=0.0024 Score=53.90 Aligned_cols=22 Identities=36% Similarity=0.751 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 036236 115 IGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 115 v~I~G~~GiGKTtLa~~v~~~~ 136 (557)
|+|.|.+|+||||+|+++.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998884
No 306
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.048 Score=51.49 Aligned_cols=170 Identities=21% Similarity=0.274 Sum_probs=92.1
Q ss_pred cccchhHHHHHHHHHHhc---------c--CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHH
Q 036236 91 TIVGLQSQLEQVWRCLVV---------E--ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEK 159 (557)
Q Consensus 91 ~~vGr~~~~~~l~~~L~~---------~--~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~ 159 (557)
.+.|.+..++.|.+...- . ..-+-|.++|++|.||+.||++|+... . ..+| +++.. +
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA-n-STFF------SvSSS----D 201 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA-N-STFF------SVSSS----D 201 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc-C-CceE------EeehH----H
Confidence 467888888888876541 1 235789999999999999999999886 1 2333 34332 2
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc-CCcEEEEEccCCCc---------cccccc----cccCCCCC--CCC
Q 036236 160 IQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSLR-EKRFVLLLDDIWER---------VDLTKV----GVPLPGPQ--NTT 223 (557)
Q Consensus 160 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~---------~~~~~l----~~~l~~~~--~~~ 223 (557)
+... .+| ..+.+...|.+.-+ +++-+|.+|.++.. +....+ +....+.+ +.|
T Consensus 202 LvSK---WmG---------ESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~g 269 (439)
T KOG0739|consen 202 LVSK---WMG---------ESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDG 269 (439)
T ss_pred HHHH---Hhc---------cHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCc
Confidence 2111 111 23455666666544 58899999998632 111112 12222222 222
Q ss_pred cEEEEeeCChHHHhcc---cCCCceecCCCCHHHHH-HHHHHHhCCCccCCCccHHHHHHHHHHHhCCC
Q 036236 224 SKVVFTTRSIDVCGSM---ESHRKFPVACLSEEDAW-ELFREKVGQETLESHHDIVELAQTVARECDGL 288 (557)
Q Consensus 224 s~iliTtR~~~v~~~~---~~~~~~~l~~L~~~ea~-~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 288 (557)
.-|+-.|..+-++.+. .-...|.+ ||++..|. .+|.-++|...... -++--+.+.+++.|.
T Consensus 270 vLVLgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhlG~tp~~L---T~~d~~eL~~kTeGy 334 (439)
T KOG0739|consen 270 VLVLGATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHLGDTPHVL---TEQDFKELARKTEGY 334 (439)
T ss_pred eEEEecCCCchhHHHHHHHHhhcceec-cCCcHHHhhhhheeccCCCcccc---chhhHHHHHhhcCCC
Confidence 4555566655543321 11122222 45555555 46666666543211 123345566666654
No 307
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.14 Score=47.05 Aligned_cols=182 Identities=19% Similarity=0.243 Sum_probs=97.2
Q ss_pred ccc-hhHHHHHHHHHHhc------------cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHH
Q 036236 92 IVG-LQSQLEQVWRCLVV------------EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLE 158 (557)
Q Consensus 92 ~vG-r~~~~~~l~~~L~~------------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 158 (557)
+|| .+.++++|.+.+.- -.+++-|.++|++|.|||-||+.|+++- ..-|+.++...
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht--------~c~firvsgse--- 216 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT--------DCTFIRVSGSE--- 216 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc--------ceEEEEechHH---
Confidence 454 57777777766541 1366788999999999999999999885 23456666531
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-cCCcEEEEEccCCCcc----------c------cccccccCCCCC-
Q 036236 159 KIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSL-REKRFVLLLDDIWERV----------D------LTKVGVPLPGPQ- 220 (557)
Q Consensus 159 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~----------~------~~~l~~~l~~~~- 220 (557)
-+++-|.+ -......++-.- ..-+-+|+.|.+++-. + .-+++..+.+..
T Consensus 217 lvqk~ige-------------gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfea 283 (404)
T KOG0728|consen 217 LVQKYIGE-------------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEA 283 (404)
T ss_pred HHHHHhhh-------------hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccc
Confidence 11111111 011122222111 2346788888875310 0 011112222111
Q ss_pred CCCcEEEEeeCChHHH-----hcccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHH
Q 036236 221 NTTSKVVFTTRSIDVC-----GSMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTI 295 (557)
Q Consensus 221 ~~~s~iliTtR~~~v~-----~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 295 (557)
...-+||..|..-++. +.-.-++.++.++-+++.-.++++-+....+.....++..+++++....|.--.++-+-
T Consensus 284 tknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcte 363 (404)
T KOG0728|consen 284 TKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTE 363 (404)
T ss_pred ccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhh
Confidence 1226777776654442 22234567888888888888888766655444444555555555443333333333333
Q ss_pred HH
Q 036236 296 GR 297 (557)
Q Consensus 296 ~~ 297 (557)
|+
T Consensus 364 ag 365 (404)
T KOG0728|consen 364 AG 365 (404)
T ss_pred hh
Confidence 33
No 308
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.43 E-value=0.0068 Score=51.84 Aligned_cols=45 Identities=20% Similarity=0.425 Sum_probs=35.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCC
Q 036236 114 IIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFD 172 (557)
Q Consensus 114 vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 172 (557)
+|.|.|++|+||||+|+.++++. .-.+ .+.-.+++++++..+++.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~---gl~~-----------vsaG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL---GLKL-----------VSAGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh---CCce-----------eeccHHHHHHHHHcCCCH
Confidence 68999999999999999999997 2111 123468889999888754
No 309
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.42 E-value=0.016 Score=57.23 Aligned_cols=59 Identities=19% Similarity=0.247 Sum_probs=42.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccC---CCCcceEEEEEeCCccCHHHHHHHHHHHhCC
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLEN---PINFDCVIWVVVSKDLRLEKIQEDIGKKIGL 170 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~---~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 170 (557)
...++-|+|++|+|||+++.+++...... ...-..++||+....++...+. ++++.++.
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl 155 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGL 155 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 57889999999999999999997765210 0012379999998888877654 44555554
No 310
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.42 E-value=0.0063 Score=54.48 Aligned_cols=27 Identities=30% Similarity=0.366 Sum_probs=23.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
....+++|.|+.|.|||||.+.++...
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 356799999999999999999998765
No 311
>PHA00729 NTP-binding motif containing protein
Probab=96.41 E-value=0.0049 Score=56.82 Aligned_cols=34 Identities=18% Similarity=0.257 Sum_probs=27.2
Q ss_pred HHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 102 VWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 102 l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
+++.+. ..+...|.|+|.+|+||||||..+.+..
T Consensus 8 ~~~~l~-~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 8 IVSAYN-NNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHh-cCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 444444 4556689999999999999999998875
No 312
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.39 E-value=0.013 Score=53.39 Aligned_cols=44 Identities=18% Similarity=0.196 Sum_probs=30.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCC-------cceEEEEEeCCc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENPIN-------FDCVIWVVVSKD 154 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~-------f~~~~wv~~~~~ 154 (557)
...++.|.|++|+|||+++.++.......... -..++|+.....
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 45689999999999999999998887322222 236888877665
No 313
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=96.39 E-value=0.0065 Score=65.22 Aligned_cols=74 Identities=11% Similarity=0.123 Sum_probs=56.6
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhC
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIG 169 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 169 (557)
+.++|.++.++.|...+. ..+.+.|+|++|+||||+|+.+.+... ...++..+|..- ...+...+++.+...++
T Consensus 31 ~~vigq~~a~~~L~~~~~---~~~~~l~~G~~G~GKttla~~l~~~l~--~~~~~~~~~~~n-p~~~~~~~~~~v~~~~G 104 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAK---QRRHVMMIGSPGTGKSMLAKAMAELLP--KEELQDILVYPN-PEDPNNPKIRTVPAGKG 104 (637)
T ss_pred HHcCChHHHHHHHHHHHH---hCCeEEEECCCCCcHHHHHHHHHHHcC--hHhHHHheEeeC-CCcchHHHHHHHHHhcC
Confidence 568999999999888777 235799999999999999999998862 345677888655 34466677777776554
No 314
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.36 E-value=0.0085 Score=60.17 Aligned_cols=47 Identities=23% Similarity=0.217 Sum_probs=38.2
Q ss_pred CcccchhHHHHHHHHHHhcc-------------CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 90 PTIVGLQSQLEQVWRCLVVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~-------------~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..++|.++.++.+.-.+... -..+.|.++|++|+|||++|+.++...
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l 71 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA 71 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999998887666520 124688999999999999999999987
No 315
>PRK06547 hypothetical protein; Provisional
Probab=96.36 E-value=0.0054 Score=54.63 Aligned_cols=32 Identities=25% Similarity=0.257 Sum_probs=26.7
Q ss_pred HHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 104 RCLVVEESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 104 ~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..+. .....+|+|.|++|+||||+|+.+.+..
T Consensus 8 ~~~~-~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 8 ARLC-GGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHhh-cCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3344 4677899999999999999999998875
No 316
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.35 E-value=0.015 Score=51.53 Aligned_cols=117 Identities=15% Similarity=0.140 Sum_probs=61.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCC--cc---eEEEEEeCCccCH--HHHHHHHHHHhCCCCCCCCCCCHHH
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPIN--FD---CVIWVVVSKDLRL--EKIQEDIGKKIGLFDDSWKSKSVEE 182 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~--f~---~~~wv~~~~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~ 182 (557)
....+++|+|+.|.|||||++.+........+. ++ .+.++ .+.... ..+.+.+.-. .. ..-..-+.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~--~q~~~~~~~tv~~nl~~~---~~--~~LS~G~~ 97 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFL--PQRPYLPLGTLREQLIYP---WD--DVLSGGEQ 97 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEE--CCCCccccccHHHHhhcc---CC--CCCCHHHH
Confidence 366799999999999999999998875221111 11 12222 222211 1233332210 11 11222334
Q ss_pred HHHHHHHHhcCCcEEEEEccCCCccc---cccccccCCCCCCCCcEEEEeeCChHHH
Q 036236 183 KAVDIFRSLREKRFVLLLDDIWERVD---LTKVGVPLPGPQNTTSKVVFTTRSIDVC 236 (557)
Q Consensus 183 ~~~~l~~~l~~k~~LlVlDdv~~~~~---~~~l~~~l~~~~~~~s~iliTtR~~~v~ 236 (557)
..-.+.+.+-.++=++++|+--..-+ ...+...+... + ..||++|.+....
T Consensus 98 ~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~-~tiiivsh~~~~~ 151 (166)
T cd03223 98 QRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--G-ITVISVGHRPSLW 151 (166)
T ss_pred HHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--C-CEEEEEeCChhHH
Confidence 44456666777888999998743222 22222222221 2 5577777776554
No 317
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.34 E-value=0.011 Score=64.24 Aligned_cols=87 Identities=21% Similarity=0.214 Sum_probs=59.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCCC---CCCCHHHHHHH
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDSW---KSKSVEEKAVD 186 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~ 186 (557)
+..+++-|+|++|+|||||+.+++.... ..-..++|++....++. ..+++++++.+.. .....++....
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~~a~---~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~ 129 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVANAQ---AAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEI 129 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHH
Confidence 3678999999999999999988766541 22356799988777664 3667777654321 23344555555
Q ss_pred HHHHhcC-CcEEEEEccCC
Q 036236 187 IFRSLRE-KRFVLLLDDIW 204 (557)
Q Consensus 187 l~~~l~~-k~~LlVlDdv~ 204 (557)
+...++. +.-|||+|.+-
T Consensus 130 i~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 130 ADMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHHhhcCCCeEEEEcchh
Confidence 5555543 56799999984
No 318
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.34 E-value=0.012 Score=52.49 Aligned_cols=119 Identities=21% Similarity=0.231 Sum_probs=60.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCC--ccCHHHHHHHHHHHhCCCCCC--CCC-------C
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSK--DLRLEKIQEDIGKKIGLFDDS--WKS-------K 178 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~l~~~~~~--~~~-------~ 178 (557)
....+++|.|+.|.|||||.+.++.-.. ...+.+++.-.. ....... ...++..... .-. .
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~~----~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lL 97 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLYD----PTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENIL 97 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCC----CCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhh
Confidence 4667999999999999999999988752 223333332110 0011111 1111110000 000 1
Q ss_pred C-HHHHHHHHHHHhcCCcEEEEEccCCCccc---cccccccCCCCCCCCcEEEEeeCChHHHh
Q 036236 179 S-VEEKAVDIFRSLREKRFVLLLDDIWERVD---LTKVGVPLPGPQNTTSKVVFTTRSIDVCG 237 (557)
Q Consensus 179 ~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---~~~l~~~l~~~~~~~s~iliTtR~~~v~~ 237 (557)
+ -+...-.+.+.+-.++-+++||+-...-+ ...+...+.....+ ..||++|.+.....
T Consensus 98 S~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~-~tii~~sh~~~~~~ 159 (171)
T cd03228 98 SGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKG-KTVIVIAHRLSTIR 159 (171)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCC-CEEEEEecCHHHHH
Confidence 1 12222335566677888999999743222 22222222222223 66888888776654
No 319
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.33 E-value=0.0092 Score=57.26 Aligned_cols=104 Identities=21% Similarity=0.205 Sum_probs=56.8
Q ss_pred cchhHH-HHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCC
Q 036236 93 VGLQSQ-LEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLF 171 (557)
Q Consensus 93 vGr~~~-~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 171 (557)
.|...+ .+.+..++. ....+|.|.|+.|.||||++..+..... ..-..++.+.-........ ..++...
T Consensus 62 lg~~~~~~~~l~~~~~--~~~GlilisG~tGSGKTT~l~all~~i~---~~~~~iitiEdp~E~~~~~-----~~q~~v~ 131 (264)
T cd01129 62 LGLKPENLEIFRKLLE--KPHGIILVTGPTGSGKTTTLYSALSELN---TPEKNIITVEDPVEYQIPG-----INQVQVN 131 (264)
T ss_pred cCCCHHHHHHHHHHHh--cCCCEEEEECCCCCcHHHHHHHHHhhhC---CCCCeEEEECCCceecCCC-----ceEEEeC
Confidence 344433 344444443 4556899999999999999998877762 1111233322111111100 0111111
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCcccccc
Q 036236 172 DDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWERVDLTK 211 (557)
Q Consensus 172 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~ 211 (557)
..........+...++..+=.++++++.+.+....
T Consensus 132 -----~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~ 166 (264)
T cd01129 132 -----EKAGLTFARGLRAILRQDPDIIMVGEIRDAETAEI 166 (264)
T ss_pred -----CcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHH
Confidence 11111345566777888888999999977665443
No 320
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.33 E-value=0.02 Score=52.88 Aligned_cols=97 Identities=23% Similarity=0.348 Sum_probs=57.5
Q ss_pred HHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCc-cCHHHHHHHHHHHhCCCC-----CCC
Q 036236 102 VWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKD-LRLEKIQEDIGKKIGLFD-----DSW 175 (557)
Q Consensus 102 l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-----~~~ 175 (557)
.++.|..=....-++|.|.+|+|||+|+.++.+.. .-+.++++.+++. ..+.++.+++...-.... ...
T Consensus 5 ~ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~-----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~ 79 (215)
T PF00006_consen 5 AIDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQ-----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATS 79 (215)
T ss_dssp HHHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHC-----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEET
T ss_pred eeccccccccCCEEEEEcCcccccchhhHHHHhcc-----cccceeeeeccccchhHHHHHHHHhhcccccccccccccc
Confidence 34455432355789999999999999999999986 2344578888765 455666666644311110 000
Q ss_pred CCCCHHH-----HHHHHHHHh--cCCcEEEEEccC
Q 036236 176 KSKSVEE-----KAVDIFRSL--REKRFVLLLDDI 203 (557)
Q Consensus 176 ~~~~~~~-----~~~~l~~~l--~~k~~LlVlDdv 203 (557)
+...... ..-.+.+++ +++.+|+++||+
T Consensus 80 ~~~~~~r~~~~~~a~t~AEyfrd~G~dVlli~Dsl 114 (215)
T PF00006_consen 80 DEPPAARYRAPYTALTIAEYFRDQGKDVLLIIDSL 114 (215)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHHTTSEEEEEEETH
T ss_pred hhhHHHHhhhhccchhhhHHHhhcCCceeehhhhh
Confidence 1111111 111122333 689999999998
No 321
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.32 E-value=0.0021 Score=60.38 Aligned_cols=84 Identities=15% Similarity=0.164 Sum_probs=49.9
Q ss_pred CCCCCccEEEcccccccccccc--hHhhcCCCCcEEEeecCCCCccCCccc-cCCCCCCeeeccCCCCc--ccChHHHhH
Q 036236 470 PTCPHLLTLFLDFNQELEMIAD--GFFQFMPSLKVLKISNCGNIFQLPVGM-SKLGSLELLDISHTFIK--ELPEELKKL 544 (557)
Q Consensus 470 ~~~~~L~~L~l~~~~~~~~~p~--~~~~~l~~L~~L~Ls~~~~~~~lP~~i-~~L~~L~~L~l~~n~l~--~lP~~i~~L 544 (557)
..+..++.|+|.+|. +..+.+ .++.+|+.|++|+|+.| .+..--.+. -.+.+|++|-|.++.+. .+-..+.++
T Consensus 68 ~~~~~v~elDL~~N~-iSdWseI~~ile~lP~l~~LNls~N-~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~l 145 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNL-ISDWSEIGAILEQLPALTTLNLSCN-SLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDL 145 (418)
T ss_pred HHhhhhhhhhcccch-hccHHHHHHHHhcCccceEeeccCC-cCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcc
Confidence 456677777777776 544443 23466777777777777 443211111 34456777777777543 555566667
Q ss_pred hhhhhcCCCCC
Q 036236 545 LEAIQRAPRPD 555 (557)
Q Consensus 545 ~~L~~L~~~~~ 555 (557)
+.++.|+.+.+
T Consensus 146 P~vtelHmS~N 156 (418)
T KOG2982|consen 146 PKVTELHMSDN 156 (418)
T ss_pred hhhhhhhhccc
Confidence 66666666554
No 322
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.32 E-value=0.0085 Score=51.40 Aligned_cols=42 Identities=31% Similarity=0.297 Sum_probs=30.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHH
Q 036236 115 IGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQE 162 (557)
Q Consensus 115 v~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 162 (557)
|.|+|++|+|||+||+.+++.. .. ...-+.++...+..++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~---~~---~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL---GR---PVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH---TC---EEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHh---hc---ceEEEEecccccccccee
Confidence 6899999999999999999987 11 234456777777666543
No 323
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.052 Score=57.55 Aligned_cols=154 Identities=19% Similarity=0.192 Sum_probs=85.6
Q ss_pred cccchhHHHHHHHHHHh---c--c-------CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHH
Q 036236 91 TIVGLQSQLEQVWRCLV---V--E-------ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLE 158 (557)
Q Consensus 91 ~~vGr~~~~~~l~~~L~---~--~-------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 158 (557)
.+.|.+...+.+.+.+. . + ...+.+.++|++|.|||.||+++++.. ...|-.+.+ .
T Consensus 243 diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~---~~~fi~v~~-----~---- 310 (494)
T COG0464 243 DIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES---RSRFISVKG-----S---- 310 (494)
T ss_pred hhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC---CCeEEEeeC-----H----
Confidence 44566666655555443 1 1 355689999999999999999999965 334432221 1
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCccc-------------cccccccCCCCCCC-Cc
Q 036236 159 KIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWERVD-------------LTKVGVPLPGPQNT-TS 224 (557)
Q Consensus 159 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~l~~~l~~~~~~-~s 224 (557)
.++.. +-..+.......+....+..++.|.+|+++.-.. ..+++..+...... +.
T Consensus 311 ~l~sk-----------~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v 379 (494)
T COG0464 311 ELLSK-----------WVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGV 379 (494)
T ss_pred HHhcc-----------ccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCce
Confidence 11110 0111222223333334457899999999863211 12223333222222 13
Q ss_pred EEEEeeCChHHHhc-----ccCCCceecCCCCHHHHHHHHHHHhCCCc
Q 036236 225 KVVFTTRSIDVCGS-----MESHRKFPVACLSEEDAWELFREKVGQET 267 (557)
Q Consensus 225 ~iliTtR~~~v~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~ 267 (557)
.||-||-.+..... ..-...+.+++-+.++..+.|..+.....
T Consensus 380 ~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~ 427 (494)
T COG0464 380 LVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKK 427 (494)
T ss_pred EEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccC
Confidence 34445554433221 12345788999999999999999886433
No 324
>PRK08233 hypothetical protein; Provisional
Probab=96.29 E-value=0.0035 Score=56.57 Aligned_cols=25 Identities=36% Similarity=0.533 Sum_probs=23.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 112 VGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 112 ~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..+|+|.|.+|+||||+|+.++..+
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4789999999999999999999886
No 325
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.28 E-value=0.013 Score=53.09 Aligned_cols=45 Identities=24% Similarity=0.207 Sum_probs=31.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHH
Q 036236 114 IIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQED 163 (557)
Q Consensus 114 vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 163 (557)
++.|.|++|+|||+|+.++..... ..-..++|++.... ..++.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~---~~g~~v~~~s~e~~--~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL---ARGEPGLYVTLEES--PEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH---HCCCcEEEEECCCC--HHHHHHH
Confidence 367999999999999999877752 22345778876543 4444433
No 326
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.28 E-value=0.025 Score=54.46 Aligned_cols=92 Identities=20% Similarity=0.151 Sum_probs=50.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCcc-CHHHHHHHHHHHhCCCCCC-CCCCCHHHH-HHH
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDL-RLEKIQEDIGKKIGLFDDS-WKSKSVEEK-AVD 186 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~-~~~~~~~~~-~~~ 186 (557)
...+++.++|++|+||||++..++.... ..-..+.+++..... ...+-+....+..+.+.-. ....+.... ...
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~---~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLK---KQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH---hcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 3568999999999999999999987762 222345666544311 1123344455555533110 011222222 233
Q ss_pred HHHHhcCCcEEEEEccCC
Q 036236 187 IFRSLREKRFVLLLDDIW 204 (557)
Q Consensus 187 l~~~l~~k~~LlVlDdv~ 204 (557)
+.....+..=++++|-.-
T Consensus 147 l~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHHCCCCEEEEeCCC
Confidence 433334445588889873
No 327
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.038 Score=58.19 Aligned_cols=173 Identities=16% Similarity=0.140 Sum_probs=90.2
Q ss_pred CcccchhHHHHHHH---HHHhccC---------CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCH
Q 036236 90 PTIVGLQSQLEQVW---RCLVVEE---------SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRL 157 (557)
Q Consensus 90 ~~~vGr~~~~~~l~---~~L~~~~---------~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 157 (557)
....|.++.++++. +.|. ++ -++-|.++|++|.|||.||++++... .+ .+|. .|...
T Consensus 150 ~DVAG~dEakeel~EiVdfLk-~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA-~V-PFf~------iSGS~-- 218 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLK-NPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA-GV-PFFS------ISGSD-- 218 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHh-CchhhHhcccccccceeEecCCCCCcHHHHHHHhccc-CC-Ccee------ccchh--
Confidence 45678887666555 4555 22 24678999999999999999999986 32 2221 11110
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCc------------c----ccccccccCCCCCC
Q 036236 158 EKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWER------------V----DLTKVGVPLPGPQN 221 (557)
Q Consensus 158 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~------------~----~~~~l~~~l~~~~~ 221 (557)
. .+.. .............+..+.-++++++|.++.. + .+.+++....+...
T Consensus 219 --F----Vemf-------VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~ 285 (596)
T COG0465 219 --F----VEMF-------VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGG 285 (596)
T ss_pred --h----hhhh-------cCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCC
Confidence 0 0000 1122233334444555667899999988531 1 12233333322221
Q ss_pred -CCcEEEEeeCChHHH-----hcccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCch
Q 036236 222 -TTSKVVFTTRSIDVC-----GSMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPL 290 (557)
Q Consensus 222 -~~s~iliTtR~~~v~-----~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 290 (557)
.+..|+..|-.++|. +.-.-++.+.++.-+-..-.++++-++........-++. .|++.+-|.-.
T Consensus 286 ~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~----~iAr~tpGfsG 356 (596)
T COG0465 286 NEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLK----KIARGTPGFSG 356 (596)
T ss_pred CCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHH----HHhhhCCCccc
Confidence 213333344444442 211234456666666566666776555443333333322 37777776543
No 328
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.26 E-value=0.0038 Score=53.83 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 036236 114 IIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 114 vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
+|.++|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 58899999999999999998876
No 329
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=96.25 E-value=0.01 Score=60.17 Aligned_cols=90 Identities=21% Similarity=0.273 Sum_probs=54.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCcc-CHHHHHHHHHHHhCCCCC-----CCCCCCHH--
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDL-RLEKIQEDIGKKIGLFDD-----SWKSKSVE-- 181 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~-----~~~~~~~~-- 181 (557)
.....++|.|..|+|||||++.++... ..+.++.+-+++.. .+.++.+.++..-++... ..+.....
T Consensus 160 ~~GqrigI~G~sG~GKSTLL~~I~~~~-----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~ 234 (444)
T PRK08972 160 GKGQRMGLFAGSGVGKSVLLGMMTRGT-----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRL 234 (444)
T ss_pred cCCCEEEEECCCCCChhHHHHHhccCC-----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHH
Confidence 356789999999999999999998654 23566666676654 345566665443222110 00111111
Q ss_pred ---HHHHHHHHHh--cCCcEEEEEccCC
Q 036236 182 ---EKAVDIFRSL--REKRFVLLLDDIW 204 (557)
Q Consensus 182 ---~~~~~l~~~l--~~k~~LlVlDdv~ 204 (557)
..+..+.+++ +++.+|+++||+-
T Consensus 235 ~a~~~A~tiAEyfrd~G~~VLl~~DslT 262 (444)
T PRK08972 235 KGCETATTIAEYFRDQGLNVLLLMDSLT 262 (444)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEcChH
Confidence 1122334444 5799999999983
No 330
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.25 E-value=0.0063 Score=54.50 Aligned_cols=120 Identities=20% Similarity=0.249 Sum_probs=61.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCC---CCC--------C
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDS---WKS--------K 178 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~--------~ 178 (557)
....+++|+|+.|.|||||++.++.... ...+.+++.-....... ..+...++..... ... .
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~----~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~L 96 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLLK----PDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKL 96 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC----CCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhc
Confidence 3567999999999999999999988652 22344443211100000 1111111110000 011 1
Q ss_pred C-HHHHHHHHHHHhcCCcEEEEEccCCCccc---cccccccCCCC-CCCCcEEEEeeCChHHHh
Q 036236 179 S-VEEKAVDIFRSLREKRFVLLLDDIWERVD---LTKVGVPLPGP-QNTTSKVVFTTRSIDVCG 237 (557)
Q Consensus 179 ~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---~~~l~~~l~~~-~~~~s~iliTtR~~~v~~ 237 (557)
+ -+...-.+.+.+..++=++++|+.-..-+ ...+...+... ..+ ..||++|.+.....
T Consensus 97 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g-~tiii~th~~~~~~ 159 (173)
T cd03230 97 SGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEG-KTILLSSHILEEAE 159 (173)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCC-CEEEEECCCHHHHH
Confidence 1 12233346667778889999999743222 12222222211 123 66888888766544
No 331
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.25 E-value=0.02 Score=54.93 Aligned_cols=40 Identities=18% Similarity=0.312 Sum_probs=31.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCC
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSK 153 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 153 (557)
...++.|.|++|+|||++|.+++.... ..-..+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a---~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA---SRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH---hCCCcEEEEEecC
Confidence 678999999999999999999877652 2234678888764
No 332
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.0092 Score=62.62 Aligned_cols=159 Identities=17% Similarity=0.118 Sum_probs=83.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCcc--CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDL--RLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIF 188 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 188 (557)
....|.|.|+.|+|||+||+++++... +...-.+.+++++.-. .++.+++.+- ..+.
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~--k~~~~hv~~v~Cs~l~~~~~e~iQk~l~-------------------~vfs 488 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS--KDLIAHVEIVSCSTLDGSSLEKIQKFLN-------------------NVFS 488 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc--cccceEEEEEechhccchhHHHHHHHHH-------------------HHHH
Confidence 456789999999999999999999983 3344455566665422 2223222221 2233
Q ss_pred HHhcCCcEEEEEccCCCcc--------ccc----cccccCC-----CCCCCCc-EEEEeeCChHHH-----hcccCCCce
Q 036236 189 RSLREKRFVLLLDDIWERV--------DLT----KVGVPLP-----GPQNTTS-KVVFTTRSIDVC-----GSMESHRKF 245 (557)
Q Consensus 189 ~~l~~k~~LlVlDdv~~~~--------~~~----~l~~~l~-----~~~~~~s-~iliTtR~~~v~-----~~~~~~~~~ 245 (557)
+.+.-.+-++||||++-.. ++. .+...+. ....+.. .+|.|.....-. ...--....
T Consensus 489 e~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~ 568 (952)
T KOG0735|consen 489 EALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVI 568 (952)
T ss_pred HHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEE
Confidence 4455678899999985211 111 0000010 0112212 344444432211 111122356
Q ss_pred ecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCC-chHHH
Q 036236 246 PVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGL-PLALL 293 (557)
Q Consensus 246 ~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLai~ 293 (557)
.|+++...+-.++++......... .......-+..+|+|. |.-+.
T Consensus 569 ~L~ap~~~~R~~IL~~~~s~~~~~---~~~~dLd~ls~~TEGy~~~DL~ 614 (952)
T KOG0735|consen 569 ALPAPAVTRRKEILTTIFSKNLSD---ITMDDLDFLSVKTEGYLATDLV 614 (952)
T ss_pred ecCCcchhHHHHHHHHHHHhhhhh---hhhHHHHHHHHhcCCccchhHH
Confidence 788888888777777655332211 1112233477778774 44333
No 333
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.23 E-value=0.021 Score=53.55 Aligned_cols=123 Identities=20% Similarity=0.224 Sum_probs=70.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCCC-------------CcceEEEEEeCCcc------CH--------------
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENPI-------------NFDCVIWVVVSKDL------RL-------------- 157 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~-------------~f~~~~wv~~~~~~------~~-------------- 157 (557)
...+++|+|+.|.|||||.+.+..-....+. .-..+.||+=.... ++
T Consensus 29 ~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~ 108 (254)
T COG1121 29 KGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGW 108 (254)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccc
Confidence 5579999999999999999999774311110 01245555311111 11
Q ss_pred --------HHHHHHHHHHhCCCC---CCCCCCCHHH-HHHHHHHHhcCCcEEEEEccCCCc------cccccccccCCCC
Q 036236 158 --------EKIQEDIGKKIGLFD---DSWKSKSVEE-KAVDIFRSLREKRFVLLLDDIWER------VDLTKVGVPLPGP 219 (557)
Q Consensus 158 --------~~~~~~i~~~l~~~~---~~~~~~~~~~-~~~~l~~~l~~k~~LlVlDdv~~~------~~~~~l~~~l~~~ 219 (557)
.+...+.++.+++.. .+....+-.+ ....+.+.|..++=|++||.--.- ..+..+...+...
T Consensus 109 ~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e 188 (254)
T COG1121 109 FRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE 188 (254)
T ss_pred cccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC
Confidence 244455555555432 1122233333 344566778999999999985321 2233333444332
Q ss_pred CCCCcEEEEeeCChHHH
Q 036236 220 QNTTSKVVFTTRSIDVC 236 (557)
Q Consensus 220 ~~~~s~iliTtR~~~v~ 236 (557)
| ..||++|.+....
T Consensus 189 --g-~tIl~vtHDL~~v 202 (254)
T COG1121 189 --G-KTVLMVTHDLGLV 202 (254)
T ss_pred --C-CEEEEEeCCcHHh
Confidence 4 7799999886543
No 334
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.21 E-value=0.0039 Score=46.11 Aligned_cols=23 Identities=30% Similarity=0.588 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 036236 114 IIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 114 vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
+|+|.|.+|+||||+++.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998885
No 335
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.21 E-value=0.0081 Score=54.07 Aligned_cols=27 Identities=41% Similarity=0.505 Sum_probs=23.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
....+++|.|+.|.|||||++.++...
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356799999999999999999998765
No 336
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.20 E-value=0.015 Score=60.26 Aligned_cols=96 Identities=22% Similarity=0.275 Sum_probs=56.0
Q ss_pred HHHHHHHhcc-CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCCC---
Q 036236 100 EQVWRCLVVE-ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDSW--- 175 (557)
Q Consensus 100 ~~l~~~L~~~-~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--- 175 (557)
.++.+.|... ....++.|.|.+|+|||||+.+++.... ..-..++|++.... ..++... ++.++...+..
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a---~~g~~vlYvs~Ees--~~qi~~r-a~rlg~~~~~l~~~ 140 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLA---AAGGKVLYVSGEES--ASQIKLR-AERLGLPSDNLYLL 140 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEcccc--HHHHHHH-HHHcCCChhcEEEe
Confidence 3444444411 2567999999999999999999988762 22345788776543 3333322 45555432221
Q ss_pred CCCCHHHHHHHHHHHhcCCcEEEEEccCC
Q 036236 176 KSKSVEEKAVDIFRSLREKRFVLLLDDIW 204 (557)
Q Consensus 176 ~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 204 (557)
...+.+++...+. +.+.-++|+|.+.
T Consensus 141 ~e~~l~~i~~~i~---~~~~~lVVIDSIq 166 (446)
T PRK11823 141 AETNLEAILATIE---EEKPDLVVIDSIQ 166 (446)
T ss_pred CCCCHHHHHHHHH---hhCCCEEEEechh
Confidence 1223443333332 2356689999973
No 337
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.18 E-value=0.011 Score=59.32 Aligned_cols=47 Identities=23% Similarity=0.206 Sum_probs=38.8
Q ss_pred CcccchhHHHHHHHHHHhcc-------------CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 90 PTIVGLQSQLEQVWRCLVVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~-------------~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..++|.++.++.+..++... -..+.|.++|++|+|||++|+.+....
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 56899999999998887520 024688999999999999999998886
No 338
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.18 E-value=0.042 Score=54.73 Aligned_cols=89 Identities=24% Similarity=0.203 Sum_probs=51.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCc-cCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKD-LRLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFR 189 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 189 (557)
+.++|.++|+.||||||-...++.++ .....-..+..|+.... -...+-++..++-++++-. ...+..+....+..
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~-~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~--vv~~~~el~~ai~~ 278 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARY-VMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE--VVYSPKELAEAIEA 278 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHH-HhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceE--EecCHHHHHHHHHH
Confidence 48999999999999996555554444 11233345666665442 2345556677777776643 23344444444333
Q ss_pred HhcCCcEEEEEccCC
Q 036236 190 SLREKRFVLLLDDIW 204 (557)
Q Consensus 190 ~l~~k~~LlVlDdv~ 204 (557)
+++. =+|.+|-+.
T Consensus 279 -l~~~-d~ILVDTaG 291 (407)
T COG1419 279 -LRDC-DVILVDTAG 291 (407)
T ss_pred -hhcC-CEEEEeCCC
Confidence 3333 355567663
No 339
>PRK05973 replicative DNA helicase; Provisional
Probab=96.18 E-value=0.032 Score=52.22 Aligned_cols=49 Identities=12% Similarity=0.132 Sum_probs=34.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHH
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDI 164 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 164 (557)
...++.|.|.+|+|||+++.++..... . .-..+++++.... ..++...+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a--~-~Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAM--K-SGRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH--h-cCCeEEEEEEeCC--HHHHHHHH
Confidence 677999999999999999999877652 2 2345667766554 34555444
No 340
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.18 E-value=0.0098 Score=53.21 Aligned_cols=23 Identities=35% Similarity=0.509 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 036236 114 IIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 114 vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
.|.|.|++|.||||+|+.+.+.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 341
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.17 E-value=0.027 Score=56.22 Aligned_cols=89 Identities=22% Similarity=0.207 Sum_probs=50.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCc-cCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKD-LRLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFR 189 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 189 (557)
..++|+|+|++|+||||++..++.... ... ..+..++.... ....+-+...++.++.+.. ...+.......+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~--~~G-kkVglI~aDt~RiaAvEQLk~yae~lgipv~--v~~d~~~L~~aL~~ 314 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH--GKK-KTVGFITTDHSRIGTVQQLQDYVKTIGFEVI--AVRDEAAMTRALTY 314 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH--HcC-CcEEEEecCCcchHHHHHHHHHhhhcCCcEE--ecCCHHHHHHHHHH
Confidence 447999999999999999999988762 122 23445554332 1223334445555554432 12344455444433
Q ss_pred HhcC-CcEEEEEccCC
Q 036236 190 SLRE-KRFVLLLDDIW 204 (557)
Q Consensus 190 ~l~~-k~~LlVlDdv~ 204 (557)
.-.. +.=++++|-.-
T Consensus 315 lk~~~~~DvVLIDTaG 330 (436)
T PRK11889 315 FKEEARVDYILIDTAG 330 (436)
T ss_pred HHhccCCCEEEEeCcc
Confidence 3221 23477888773
No 342
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.15 E-value=0.0015 Score=62.63 Aligned_cols=106 Identities=22% Similarity=0.280 Sum_probs=69.5
Q ss_pred ccccceEEEccccccccc------cCCCCCCCccEEEcccccccc----cccchHhhcCCCCcEEEeecCCCCcc-----
Q 036236 449 GWENVRRLSLMQNQIETL------SEVPTCPHLLTLFLDFNQELE----MIADGFFQFMPSLKVLKISNCGNIFQ----- 513 (557)
Q Consensus 449 ~~~~l~~l~l~~~~~~~~------~~~~~~~~L~~L~l~~~~~~~----~~p~~~~~~l~~L~~L~Ls~~~~~~~----- 513 (557)
..+.+..+.++.|.+..- ....+|++|++|+|..|.+.. .+.. .++.+++|+.|++++| .++.
T Consensus 183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak-aL~s~~~L~El~l~dc-ll~~~Ga~a 260 (382)
T KOG1909|consen 183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK-ALSSWPHLRELNLGDC-LLENEGAIA 260 (382)
T ss_pred hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH-Hhcccchheeeccccc-ccccccHHH
Confidence 345667777777766431 123678888888888887321 1122 2566788888888888 5542
Q ss_pred CCccc-cCCCCCCeeeccCCCCc-----ccChHHHhHhhhhhcCCCCCC
Q 036236 514 LPVGM-SKLGSLELLDISHTFIK-----ELPEELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 514 lP~~i-~~L~~L~~L~l~~n~l~-----~lP~~i~~L~~L~~L~~~~~~ 556 (557)
+-+.+ ...++|++|.|.+|.|+ .+-..+...+.|..|++|+|+
T Consensus 261 ~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 261 FVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 22222 22578888888888876 345567778888888888875
No 343
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=96.14 E-value=0.022 Score=54.19 Aligned_cols=95 Identities=14% Similarity=0.136 Sum_probs=58.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhccc-CCCCcceEEEEEeCCcc-CHHHHHHHHHHHhCCCCC-----CCCCCCHHH
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLE-NPINFDCVIWVVVSKDL-RLEKIQEDIGKKIGLFDD-----SWKSKSVEE 182 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~-~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~-----~~~~~~~~~ 182 (557)
....-++|.|.+|+|||+|+..+.+...- .+..-+.++++-+++.. ...++.+++...=.+... ..+......
T Consensus 67 g~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r 146 (276)
T cd01135 67 VRGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIER 146 (276)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHH
Confidence 46678899999999999999998877510 12235678888887754 456666666554222110 001111111
Q ss_pred -----HHHHHHHHh---cCCcEEEEEccCC
Q 036236 183 -----KAVDIFRSL---REKRFVLLLDDIW 204 (557)
Q Consensus 183 -----~~~~l~~~l---~~k~~LlVlDdv~ 204 (557)
....+.+++ .++++|+++||+-
T Consensus 147 ~~a~~~a~aiAEyfrd~~g~~VLl~~D~lt 176 (276)
T cd01135 147 IITPRMALTTAEYLAYEKGKHVLVILTDMT 176 (276)
T ss_pred HHHHHHHHHHHHHHHhccCCeEEEEEcChh
Confidence 222344554 3689999999983
No 344
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.14 E-value=0.031 Score=52.45 Aligned_cols=54 Identities=20% Similarity=0.300 Sum_probs=35.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCC
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGL 170 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 170 (557)
...++.|.|++|+||||+|.+++..... .. ..+++++.. .+..++.+.+ .+++.
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~--~g-~~~~yi~~e--~~~~~~~~~~-~~~g~ 76 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQ--NG-YSVSYVSTQ--LTTTEFIKQM-MSLGY 76 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh--CC-CcEEEEeCC--CCHHHHHHHH-HHhCC
Confidence 5669999999999999998776665411 12 345666633 3445666665 34443
No 345
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.13 E-value=0.0051 Score=56.98 Aligned_cols=27 Identities=37% Similarity=0.527 Sum_probs=24.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
.+..+|+|.|.+|+|||||++.+...+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999999876
No 346
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.12 E-value=0.0051 Score=56.87 Aligned_cols=27 Identities=37% Similarity=0.459 Sum_probs=24.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
+...+|+|+|++|+|||||++.+....
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998876
No 347
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.12 E-value=0.022 Score=59.08 Aligned_cols=89 Identities=22% Similarity=0.302 Sum_probs=48.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCc-cCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKD-LRLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFR 189 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 189 (557)
...+|+|+|++|+||||++..++..+. .......+..++.... ......+......++.... ...+..++...+ +
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la-~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~--~a~d~~~L~~aL-~ 424 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFA-AQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH--EADSAESLLDLL-E 424 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH-HhcCCCceEEEecccccccHHHHHHHhhcccCceeE--ecCcHHHHHHHH-H
Confidence 568999999999999999999887652 1222234555544221 1122333344444443321 112233333333 3
Q ss_pred HhcCCcEEEEEccCC
Q 036236 190 SLREKRFVLLLDDIW 204 (557)
Q Consensus 190 ~l~~k~~LlVlDdv~ 204 (557)
.+.+ .=+|++|..-
T Consensus 425 ~l~~-~DLVLIDTaG 438 (559)
T PRK12727 425 RLRD-YKLVLIDTAG 438 (559)
T ss_pred Hhcc-CCEEEecCCC
Confidence 3333 4588889873
No 348
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.11 E-value=0.041 Score=49.71 Aligned_cols=126 Identities=20% Similarity=0.211 Sum_probs=69.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeC-------------------CccC--------------
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVS-------------------KDLR-------------- 156 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-------------------~~~~-------------- 156 (557)
....+++|+|++|+|||||.+-+..-. ..-++.+|+.-. +.++
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~LE----~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~la 101 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNGLE----EPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLA 101 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCc----CCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhh
Confidence 366799999999999999999875432 222344555321 1111
Q ss_pred -----------HHHHHHHHHHHhCCCCCC----CCCCCHHHHHHHHHHHhcCCcEEEEEccCCCccc---cccccccCCC
Q 036236 157 -----------LEKIQEDIGKKIGLFDDS----WKSKSVEEKAVDIFRSLREKRFVLLLDDIWERVD---LTKVGVPLPG 218 (557)
Q Consensus 157 -----------~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---~~~l~~~l~~ 218 (557)
.++...++++.+++.... ..-..-++..-.|.+.|.=++-++.+|..-+.-+ ..+++.....
T Consensus 102 p~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~ 181 (240)
T COG1126 102 PVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKD 181 (240)
T ss_pred hHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHH
Confidence 233344445555543211 1222334445567778888888999999854433 2222222221
Q ss_pred CCCCCcEEEEeeCChHHHhcc
Q 036236 219 PQNTTSKVVFTTRSIDVCGSM 239 (557)
Q Consensus 219 ~~~~~s~iliTtR~~~v~~~~ 239 (557)
....|-.+|+.|..-..+...
T Consensus 182 LA~eGmTMivVTHEM~FAr~V 202 (240)
T COG1126 182 LAEEGMTMIIVTHEMGFAREV 202 (240)
T ss_pred HHHcCCeEEEEechhHHHHHh
Confidence 122225566667765655543
No 349
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.11 E-value=0.013 Score=52.38 Aligned_cols=120 Identities=18% Similarity=0.125 Sum_probs=61.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEe---CCccCHHHHHHHHH--HHhCCCCC-CCCCCCHHH--
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVV---SKDLRLEKIQEDIG--KKIGLFDD-SWKSKSVEE-- 182 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~---~~~~~~~~~~~~i~--~~l~~~~~-~~~~~~~~~-- 182 (557)
....|.|+|..|-||||.|...+-+.. .... .+..+.. .........++.+. ........ .+...+.++
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~--g~G~-~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~ 97 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAV--GHGK-KVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDI 97 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHH--HCCC-eEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHH
Confidence 457899999999999999998877752 2222 3333332 21233334443321 00000000 011111111
Q ss_pred -----HHHHHHHHhcC-CcEEEEEccCCCc-----cccccccccCCCCCCCCcEEEEeeCChH
Q 036236 183 -----KAVDIFRSLRE-KRFVLLLDDIWER-----VDLTKVGVPLPGPQNTTSKVVFTTRSID 234 (557)
Q Consensus 183 -----~~~~l~~~l~~-k~~LlVlDdv~~~-----~~~~~l~~~l~~~~~~~s~iliTtR~~~ 234 (557)
.....++.+.. +-=|||||.+-.. -+.+.+...+.....+ ..||+|-|+..
T Consensus 98 ~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~-~evVlTGR~~p 159 (191)
T PRK05986 98 AAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGM-QHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCC-CEEEEECCCCC
Confidence 22233344444 4459999998432 2333444444333334 78999999753
No 350
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.10 E-value=0.025 Score=57.62 Aligned_cols=26 Identities=31% Similarity=0.471 Sum_probs=23.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...+|.++|++|+||||++..++..+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999988776
No 351
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.09 E-value=0.0038 Score=50.83 Aligned_cols=22 Identities=36% Similarity=0.694 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 036236 115 IGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 115 v~I~G~~GiGKTtLa~~v~~~~ 136 (557)
|.|+|++|+|||++|+.++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999988776
No 352
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.09 E-value=0.027 Score=54.07 Aligned_cols=28 Identities=32% Similarity=0.375 Sum_probs=25.8
Q ss_pred cCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 109 EESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 109 ~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..+..+|.|.|.+|.|||||+..+.+..
T Consensus 101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 101 ARKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred hcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999999999986
No 353
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.06 E-value=0.012 Score=48.53 Aligned_cols=47 Identities=17% Similarity=0.240 Sum_probs=37.2
Q ss_pred CcccchhHHHHHHHHHHhc------cCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 90 PTIVGLQSQLEQVWRCLVV------EESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~------~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..++|..-..+.+.+.+.. .+++-|++.+|++|+|||.+++.+++..
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 4678888777777777652 2466788999999999999999988884
No 354
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.06 E-value=0.0035 Score=32.04 Aligned_cols=16 Identities=38% Similarity=0.644 Sum_probs=6.9
Q ss_pred CCCeeeccCCCCcccC
Q 036236 523 SLELLDISHTFIKELP 538 (557)
Q Consensus 523 ~L~~L~l~~n~l~~lP 538 (557)
+|+.|+|++|++++||
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555554
No 355
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.06 E-value=0.025 Score=58.68 Aligned_cols=97 Identities=23% Similarity=0.267 Sum_probs=55.4
Q ss_pred HHHHHHHHhc-cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCCC--
Q 036236 99 LEQVWRCLVV-EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDSW-- 175 (557)
Q Consensus 99 ~~~l~~~L~~-~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-- 175 (557)
+.++.+.|.. =....++.|.|.+|+|||||+.+++..... .-..++|++.... ..++.. -+..++...+..
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~---~g~kvlYvs~EEs--~~qi~~-ra~rlg~~~~~l~~ 153 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAK---NQMKVLYVSGEES--LQQIKM-RAIRLGLPEPNLYV 153 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHh---cCCcEEEEECcCC--HHHHHH-HHHHcCCChHHeEE
Confidence 3444454541 136689999999999999999999877622 1235778765543 333322 233444432211
Q ss_pred -CCCCHHHHHHHHHHHhcCCcEEEEEccCC
Q 036236 176 -KSKSVEEKAVDIFRSLREKRFVLLLDDIW 204 (557)
Q Consensus 176 -~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 204 (557)
...+.+++...+. +.+.-++|+|.+.
T Consensus 154 ~~e~~~~~I~~~i~---~~~~~~vVIDSIq 180 (454)
T TIGR00416 154 LSETNWEQICANIE---EENPQACVIDSIQ 180 (454)
T ss_pred cCCCCHHHHHHHHH---hcCCcEEEEecch
Confidence 1233443333332 2356689999974
No 356
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.06 E-value=0.012 Score=54.79 Aligned_cols=58 Identities=21% Similarity=0.251 Sum_probs=37.7
Q ss_pred HHHHHHHHHhc-cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccC
Q 036236 98 QLEQVWRCLVV-EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLR 156 (557)
Q Consensus 98 ~~~~l~~~L~~-~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~ 156 (557)
+..++++.+.. .++..+|+|.|+||+|||||...+...+. ...+--.++-|+-+.+++
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~-~~g~~VaVlAVDPSSp~t 72 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELR-ERGKRVAVLAVDPSSPFT 72 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHH-HTT--EEEEEE-GGGGCC
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHh-hcCCceEEEEECCCCCCC
Confidence 44556665553 45778999999999999999999988873 233333556666565554
No 357
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.05 E-value=0.034 Score=56.17 Aligned_cols=90 Identities=19% Similarity=0.190 Sum_probs=53.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCC-CCcceEEEEEeCCc-cCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENP-INFDCVIWVVVSKD-LRLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIF 188 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~-~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 188 (557)
..++|.++|+.|+||||.+..++..+.... ..-..+..++.... .....-++..++.++.+.. ......+....+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~--~~~~~~~l~~~L~ 250 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVK--AIESFKDLKEEIT 250 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceE--eeCcHHHHHHHHH
Confidence 457999999999999999999887762111 12234555555432 1223336667777766432 2223344444443
Q ss_pred HHhcCCcEEEEEccCC
Q 036236 189 RSLREKRFVLLLDDIW 204 (557)
Q Consensus 189 ~~l~~k~~LlVlDdv~ 204 (557)
+ + .+.-++++|.+.
T Consensus 251 ~-~-~~~DlVLIDTaG 264 (388)
T PRK12723 251 Q-S-KDFDLVLVDTIG 264 (388)
T ss_pred H-h-CCCCEEEEcCCC
Confidence 3 2 345688999984
No 358
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.05 E-value=0.0096 Score=52.33 Aligned_cols=116 Identities=22% Similarity=0.245 Sum_probs=62.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCcc--CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDL--RLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIF 188 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 188 (557)
...+++|+|..|.|||||++.+..... ...+.+++...... .... ....++... .-..-+...-.+.
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~----~~~G~i~~~~~~~~~~~~~~----~~~~i~~~~---qlS~G~~~r~~l~ 92 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLK----PTSGEILIDGKDIAKLPLEE----LRRRIGYVP---QLSGGQRQRVALA 92 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCccEEEECCEEcccCCHHH----HHhceEEEe---eCCHHHHHHHHHH
Confidence 557999999999999999999988751 23444444321111 1111 111122110 0112233334456
Q ss_pred HHhcCCcEEEEEccCCCccc---cccccccCCCC-CCCCcEEEEeeCChHHHhc
Q 036236 189 RSLREKRFVLLLDDIWERVD---LTKVGVPLPGP-QNTTSKVVFTTRSIDVCGS 238 (557)
Q Consensus 189 ~~l~~k~~LlVlDdv~~~~~---~~~l~~~l~~~-~~~~s~iliTtR~~~v~~~ 238 (557)
..+...+-++++|+.....+ ...+...+... ..+ ..++++|.+......
T Consensus 93 ~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~-~tii~~sh~~~~~~~ 145 (157)
T cd00267 93 RALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEG-RTVIIVTHDPELAEL 145 (157)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCC-CEEEEEeCCHHHHHH
Confidence 66666788999999853322 22222222111 123 568888887665544
No 359
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.05 E-value=0.0054 Score=57.64 Aligned_cols=88 Identities=23% Similarity=0.250 Sum_probs=54.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCC-cceEEEEEeCCccCHHHHHHHHHHHhCCCCCC-------------C
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPIN-FDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDS-------------W 175 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------------~ 175 (557)
+...++.|.|++|+|||+|+.++..... .. -..++|++...+. .++.+.+. .++.+... .
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~---~~~ge~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~ 90 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGL---KNFGEKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSGKLKIIDAFP 90 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHH---HHHT--EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTTSEEEEESSG
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhh---hhcCCcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcCCEEEEeccc
Confidence 3678999999999999999999765541 22 3467888775543 44444433 33321100 0
Q ss_pred C-----CCCHHHHHHHHHHHhcC-CcEEEEEccC
Q 036236 176 K-----SKSVEEKAVDIFRSLRE-KRFVLLLDDI 203 (557)
Q Consensus 176 ~-----~~~~~~~~~~l~~~l~~-k~~LlVlDdv 203 (557)
. ..+.......+.+.++. +...+|+|.+
T Consensus 91 ~~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 91 ERIGWSPNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp GGST-TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred ccccccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 1 34667777777776654 4578899986
No 360
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.04 E-value=0.00038 Score=64.54 Aligned_cols=60 Identities=27% Similarity=0.437 Sum_probs=31.1
Q ss_pred cccccceEEEccccccccccCCCCCCCccEEEcccccccccccch-HhhcCCCCcEEEeecC
Q 036236 448 KGWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNQELEMIADG-FFQFMPSLKVLKISNC 508 (557)
Q Consensus 448 ~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~-~~~~l~~L~~L~Ls~~ 508 (557)
..++.+..|+|+-|.+..+.....|.+|..|+|..|. +..+..- .+.++++||.|.|..|
T Consensus 38 ~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred HhcccceeEEeeccccccchhHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhhccC
Confidence 3444555556655655555555555555555555554 4333321 1345555555555544
No 361
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.04 E-value=0.044 Score=53.04 Aligned_cols=80 Identities=16% Similarity=0.065 Sum_probs=43.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCC--CCCCCCCHHHHHHHH
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFD--DSWKSKSVEEKAVDI 187 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~--~~~~~~~~~~~~~~l 187 (557)
+...+|+|.|..|+||||+|+.+..-...... -..+..++............. .+... .-....+.......+
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~-~g~V~vi~~D~f~~~~~~l~~----~g~~~~~g~P~s~D~~~l~~~L 134 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSRWPE-HRKVELITTDGFLHPNQVLKE----RNLMKKKGFPESYDMHRLVKFL 134 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCC-CCceEEEecccccccHHHHHH----cCCccccCCChhccHHHHHHHH
Confidence 46689999999999999999887665511001 113444444443322332222 22111 112345566666666
Q ss_pred HHHhcCC
Q 036236 188 FRSLREK 194 (557)
Q Consensus 188 ~~~l~~k 194 (557)
.....++
T Consensus 135 ~~Lk~g~ 141 (290)
T TIGR00554 135 SDLKSGK 141 (290)
T ss_pred HHHHCCC
Confidence 5555544
No 362
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=96.03 E-value=0.02 Score=61.59 Aligned_cols=74 Identities=14% Similarity=0.162 Sum_probs=50.6
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhC
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIG 169 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 169 (557)
+.++|.++.++.+...+. .+ +.+.++|++|+||||+|+.+.+... ...|...+++. ....+...+++.+...++
T Consensus 18 ~~viG~~~a~~~l~~a~~-~~--~~~ll~G~pG~GKT~la~~la~~l~--~~~~~~~~~~~-n~~~~~~~~~~~v~~~~g 91 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAK-QK--RNVLLIGEPGVGKSMLAKAMAELLP--DEELEDILVYP-NPEDPNMPRIVEVPAGEG 91 (608)
T ss_pred hhccCHHHHHHHHHHHHH-cC--CCEEEECCCCCCHHHHHHHHHHHcC--chhheeEEEEe-CCCCCchHHHHHHHHhhc
Confidence 568999999988888887 22 4666999999999999999998872 22333333332 222344555666666554
No 363
>PRK14527 adenylate kinase; Provisional
Probab=96.03 E-value=0.01 Score=54.02 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=24.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
....+|.|+|++|+||||+|+.+++..
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998876
No 364
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.03 E-value=0.011 Score=52.41 Aligned_cols=45 Identities=20% Similarity=0.212 Sum_probs=34.3
Q ss_pred ccchhHHHHHHHHHHhc-cCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 92 IVGLQSQLEQVWRCLVV-EESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 92 ~vGr~~~~~~l~~~L~~-~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
+||.+..+.++.+.+.. .....-|.|+|..|+||+.+|+.+++..
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 47888888888887763 2344677899999999999999999875
No 365
>PTZ00301 uridine kinase; Provisional
Probab=96.01 E-value=0.0057 Score=56.33 Aligned_cols=25 Identities=36% Similarity=0.663 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 112 VGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 112 ~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..+|+|.|.+|+||||||+.+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 4689999999999999999988775
No 366
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.01 E-value=0.035 Score=51.57 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=23.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
....+++|+|..|.|||||++.+....
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 35 DAGEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 366789999999999999999998764
No 367
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.00 E-value=0.0077 Score=52.20 Aligned_cols=25 Identities=36% Similarity=0.499 Sum_probs=22.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 112 VGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 112 ~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..+|.|.|.+|.||||||+.+.+.+
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L 26 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRL 26 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999998
No 368
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.00 E-value=0.0047 Score=51.11 Aligned_cols=28 Identities=36% Similarity=0.546 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhhcccCCCCcce
Q 036236 115 IGLYGMGGVGKTTLLTHINNKFLENPINFDC 145 (557)
Q Consensus 115 v~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~ 145 (557)
|.|+|.+|+|||++|+.++... ...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~---~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL---GLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT---T--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHc---CCceeE
Confidence 6799999999999999999987 455643
No 369
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.99 E-value=0.011 Score=49.68 Aligned_cols=69 Identities=16% Similarity=0.173 Sum_probs=40.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 036236 112 VGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSL 191 (557)
Q Consensus 112 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 191 (557)
.+-|.|.|.+|+||||++.+++... . .-|++++.-..-..+....-+... ....+.+.....|-..+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~-----~---~~~i~isd~vkEn~l~~gyDE~y~-----c~i~DEdkv~D~Le~~m 73 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT-----G---LEYIEISDLVKENNLYEGYDEEYK-----CHILDEDKVLDELEPLM 73 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh-----C---CceEehhhHHhhhcchhccccccc-----CccccHHHHHHHHHHHH
Confidence 4568899999999999999998665 1 236666654333333332222111 12334555555665555
Q ss_pred cC
Q 036236 192 RE 193 (557)
Q Consensus 192 ~~ 193 (557)
.+
T Consensus 74 ~~ 75 (176)
T KOG3347|consen 74 IE 75 (176)
T ss_pred hc
Confidence 44
No 370
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.99 E-value=0.0061 Score=56.96 Aligned_cols=23 Identities=39% Similarity=0.515 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 036236 114 IIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 114 vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
.|.|.|++|+||||+|+.+++.+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999998886
No 371
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.99 E-value=0.017 Score=59.29 Aligned_cols=92 Identities=18% Similarity=0.248 Sum_probs=58.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCcc-CHHHHHHHHHHHhCCCCC-----CCCCCCHH--
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDL-RLEKIQEDIGKKIGLFDD-----SWKSKSVE-- 181 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~-----~~~~~~~~-- 181 (557)
....-++|.|.+|+|||||+.++.+... +.+-+.++++-++... .+.++...+...-.+... ..+.....
T Consensus 141 gkGQR~gIfa~~G~GKt~Ll~~~~~~~~--~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~ 218 (461)
T PRK12597 141 AKGGKTGLFGGAGVGKTVLMMELIFNIS--KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARM 218 (461)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHHH--hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHH
Confidence 4677899999999999999999988872 2256778888776543 456666666543222110 00111111
Q ss_pred ---HHHHHHHHHh---cCCcEEEEEccC
Q 036236 182 ---EKAVDIFRSL---REKRFVLLLDDI 203 (557)
Q Consensus 182 ---~~~~~l~~~l---~~k~~LlVlDdv 203 (557)
..+..+.+++ +++.+||++|++
T Consensus 219 ~a~~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 219 RVVLTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEeccc
Confidence 1233344555 378999999998
No 372
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.98 E-value=0.01 Score=55.87 Aligned_cols=28 Identities=29% Similarity=0.491 Sum_probs=25.4
Q ss_pred cCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 109 EESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 109 ~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
.+...+|+|.|+.|.|||||++.+....
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3577899999999999999999999887
No 373
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.97 E-value=0.036 Score=51.60 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 036236 114 IIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 114 vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
+|+|.|.+|+||||+|+.+....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999887
No 374
>PTZ00494 tuzin-like protein; Provisional
Probab=95.97 E-value=0.091 Score=52.75 Aligned_cols=164 Identities=15% Similarity=0.082 Sum_probs=97.5
Q ss_pred CCcccchhHHHHHHHHHHhc--cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHH
Q 036236 89 EPTIVGLQSQLEQVWRCLVV--EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGK 166 (557)
Q Consensus 89 ~~~~vGr~~~~~~l~~~L~~--~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 166 (557)
.+.+|.|+++-..+...|.+ ...++++.+.|.-|.||++|.+...... . -..++|++... ++-++.+.+
T Consensus 370 ~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE-~-----~paV~VDVRg~---EDtLrsVVK 440 (664)
T PTZ00494 370 EAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVE-G-----VALVHVDVGGT---EDTLRSVVR 440 (664)
T ss_pred cccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHc-C-----CCeEEEEecCC---cchHHHHHH
Confidence 46789999988888887774 2478999999999999999999987765 1 23677888765 445678888
Q ss_pred HhCCCCCCCCCCCHHHHHHHHH---HHhcCCcEEEEEccCCCcccccccc---ccCCCCCCCCcEEEEeeCChHHH---h
Q 036236 167 KIGLFDDSWKSKSVEEKAVDIF---RSLREKRFVLLLDDIWERVDLTKVG---VPLPGPQNTTSKVVFTTRSIDVC---G 237 (557)
Q Consensus 167 ~l~~~~~~~~~~~~~~~~~~l~---~~l~~k~~LlVlDdv~~~~~~~~l~---~~l~~~~~~~s~iliTtR~~~v~---~ 237 (557)
+++.+.-+.-..-.+-..+... ....++.-+||+-=- +-.++..+. ..|.....- ++|++----+.+. .
T Consensus 441 ALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLR-EGssL~RVYnE~vaLacDrRl-CHvv~EVplESLT~~n~ 518 (664)
T PTZ00494 441 ALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLR-EGSDLGRVYGEVVSLVSDCQA-CHIVLAVPMKALTPLNV 518 (664)
T ss_pred HhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEec-cCCcHHHHHHHHHHHHccchh-heeeeechHhhhchhhc
Confidence 8887653322222222222222 223455556665311 111111110 011111122 6666543333221 1
Q ss_pred cccCCCceecCCCCHHHHHHHHHHHh
Q 036236 238 SMESHRKFPVACLSEEDAWELFREKV 263 (557)
Q Consensus 238 ~~~~~~~~~l~~L~~~ea~~L~~~~~ 263 (557)
.+.--..|.+++++.++|.++..+..
T Consensus 519 ~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 519 SSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred cCccceeEecCCcCHHHHHHHHhccc
Confidence 12234568899999999999887654
No 375
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.96 E-value=0.017 Score=57.67 Aligned_cols=62 Identities=24% Similarity=0.277 Sum_probs=48.0
Q ss_pred cccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHH
Q 036236 91 TIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQ 161 (557)
Q Consensus 91 ~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 161 (557)
.++|+++.+..+...+. ..+.+.+.|++|+|||+||+.++... . ...++|.+.......++.
T Consensus 25 ~~~g~~~~~~~~l~a~~---~~~~vll~G~PG~gKT~la~~lA~~l---~---~~~~~i~~t~~l~p~d~~ 86 (329)
T COG0714 25 VVVGDEEVIELALLALL---AGGHVLLEGPPGVGKTLLARALARAL---G---LPFVRIQCTPDLLPSDLL 86 (329)
T ss_pred eeeccHHHHHHHHHHHH---cCCCEEEECCCCccHHHHHHHHHHHh---C---CCeEEEecCCCCCHHHhc
Confidence 48999999988888887 56678899999999999999999987 2 234556666665555543
No 376
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.96 E-value=0.0077 Score=57.98 Aligned_cols=57 Identities=21% Similarity=0.291 Sum_probs=35.3
Q ss_pred HHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHH
Q 036236 100 EQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQ 161 (557)
Q Consensus 100 ~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 161 (557)
..+++.+. . ..+-|.++|+.|+|||++++...... .. ..+ .+.-+..+.......++
T Consensus 23 ~~ll~~l~-~-~~~pvLl~G~~GtGKT~li~~~l~~l-~~-~~~-~~~~~~~s~~Tts~~~q 79 (272)
T PF12775_consen 23 SYLLDLLL-S-NGRPVLLVGPSGTGKTSLIQNFLSSL-DS-DKY-LVITINFSAQTTSNQLQ 79 (272)
T ss_dssp HHHHHHHH-H-CTEEEEEESSTTSSHHHHHHHHHHCS-TT-CCE-EEEEEES-TTHHHHHHH
T ss_pred HHHHHHHH-H-cCCcEEEECCCCCchhHHHHhhhccC-Cc-ccc-ceeEeeccCCCCHHHHH
Confidence 44555555 2 45677999999999999999988775 21 122 23345555554444443
No 377
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=95.95 E-value=0.03 Score=57.08 Aligned_cols=90 Identities=17% Similarity=0.223 Sum_probs=53.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCcc-CHHHHHHHHHHHhCCCCC-----CCCCCCHH--
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDL-RLEKIQEDIGKKIGLFDD-----SWKSKSVE-- 181 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~-----~~~~~~~~-- 181 (557)
.....++|.|..|+|||||++.+++.. ..+.++++-++... .+.++....+..-++... ..+.....
T Consensus 156 ~~Gqri~I~G~sG~GKTtLL~~I~~~~-----~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~ 230 (442)
T PRK08927 156 CRGQRMGIFAGSGVGKSVLLSMLARNA-----DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRR 230 (442)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc-----CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHH
Confidence 466789999999999999999998775 22455556665543 344555444433222110 00111111
Q ss_pred ---HHHHHHHHHh--cCCcEEEEEccCC
Q 036236 182 ---EKAVDIFRSL--REKRFVLLLDDIW 204 (557)
Q Consensus 182 ---~~~~~l~~~l--~~k~~LlVlDdv~ 204 (557)
..+..+.+++ +++.+|+++||+-
T Consensus 231 ~a~~~a~tiAEyfrd~G~~Vll~~DslT 258 (442)
T PRK08927 231 QAAYLTLAIAEYFRDQGKDVLCLMDSVT 258 (442)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeCcH
Confidence 1222344444 5799999999983
No 378
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.94 E-value=0.015 Score=55.05 Aligned_cols=60 Identities=23% Similarity=0.321 Sum_probs=43.1
Q ss_pred HHHHHHHhc-cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHH
Q 036236 100 EQVWRCLVV-EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKI 160 (557)
Q Consensus 100 ~~l~~~L~~-~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 160 (557)
.+++..+.. .++..+|+|.|.||+|||||...+...+ ....+--.++=|+-|.+++--.+
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l-~~~G~rVaVlAVDPSSp~TGGsi 98 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL-RERGHRVAVLAVDPSSPFTGGSI 98 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH-HHCCcEEEEEEECCCCCCCCccc
Confidence 455555553 4677899999999999999999998888 33445456666766666654333
No 379
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.087 Score=49.60 Aligned_cols=46 Identities=30% Similarity=0.410 Sum_probs=37.6
Q ss_pred cccchhHHHHHHHHHHhc------------cCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 91 TIVGLQSQLEQVWRCLVV------------EESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 91 ~~vGr~~~~~~l~~~L~~------------~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
.+=|-+.++++|.+...- -...+-|.++|.+|.|||-||++|++.-
T Consensus 186 diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT 243 (440)
T KOG0726|consen 186 DIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT 243 (440)
T ss_pred ccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhccc
Confidence 345789999999887651 1356778899999999999999999986
No 380
>PRK14974 cell division protein FtsY; Provisional
Probab=95.93 E-value=0.037 Score=54.77 Aligned_cols=91 Identities=18% Similarity=0.107 Sum_probs=49.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCc-cCHHHHHHHHHHHhCCCCCC-CCCCCHHHHH-HHH
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKD-LRLEKIQEDIGKKIGLFDDS-WKSKSVEEKA-VDI 187 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~-~~l 187 (557)
+..+|.++|++|+||||++..++..+. ...+ .++.+..... ......+...+..++.+... ....+....+ ..+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~--~~g~-~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK--KNGF-SVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH--HcCC-eEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 468999999999999999888887762 2223 3333432211 12334456667777654321 1122222222 222
Q ss_pred HHHhcCCcEEEEEccCC
Q 036236 188 FRSLREKRFVLLLDDIW 204 (557)
Q Consensus 188 ~~~l~~k~~LlVlDdv~ 204 (557)
...-....=++++|..-
T Consensus 216 ~~~~~~~~DvVLIDTaG 232 (336)
T PRK14974 216 EHAKARGIDVVLIDTAG 232 (336)
T ss_pred HHHHhCCCCEEEEECCC
Confidence 22212222389999874
No 381
>PRK03839 putative kinase; Provisional
Probab=95.92 E-value=0.0062 Score=54.91 Aligned_cols=23 Identities=43% Similarity=0.654 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 036236 114 IIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 114 vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
.|.|.|++|+||||+++.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999987
No 382
>PRK08149 ATP synthase SpaL; Validated
Probab=95.92 E-value=0.032 Score=56.79 Aligned_cols=90 Identities=18% Similarity=0.241 Sum_probs=52.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCC-ccCHHHHHHHHHHHhCCCC-----CCCCCCCH---
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSK-DLRLEKIQEDIGKKIGLFD-----DSWKSKSV--- 180 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~-----~~~~~~~~--- 180 (557)
.....++|+|.+|+|||||+..++... ..+.++...+.. ..++..+..+......... ...+....
T Consensus 149 ~~Gq~i~I~G~sG~GKTTLl~~i~~~~-----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~ 223 (428)
T PRK08149 149 GVGQRMGIFASAGCGKTSLMNMLIEHS-----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRC 223 (428)
T ss_pred ecCCEEEEECCCCCChhHHHHHHhcCC-----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHH
Confidence 466789999999999999999988764 223334444433 3345566666655432211 00111111
Q ss_pred --HHHHHHHHHHh--cCCcEEEEEccCC
Q 036236 181 --EEKAVDIFRSL--REKRFVLLLDDIW 204 (557)
Q Consensus 181 --~~~~~~l~~~l--~~k~~LlVlDdv~ 204 (557)
...+..+.+++ +++++||++||+-
T Consensus 224 ~a~~~a~tiAE~fr~~G~~Vll~~DslT 251 (428)
T PRK08149 224 NAALVATTVAEYFRDQGKRVVLFIDSMT 251 (428)
T ss_pred hHHHHHHHHHHHHHHcCCCEEEEccchH
Confidence 12223334444 5799999999983
No 383
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.91 E-value=0.029 Score=56.69 Aligned_cols=84 Identities=15% Similarity=0.204 Sum_probs=44.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCC-ccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 036236 112 VGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSK-DLRLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRS 190 (557)
Q Consensus 112 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 190 (557)
..++.|+|++|+||||++..++.... ....+ .+..++... .......+...++.++.+.. ...+. ..+.+.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~-~~~G~-~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~--~~~~~----~~l~~~ 294 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYF-LHMGK-SVSLYTTDNYRIAAIEQLKRYADTMGMPFY--PVKDI----KKFKET 294 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-HhcCC-eEEEecccchhhhHHHHHHHHHHhcCCCee--ehHHH----HHHHHH
Confidence 46899999999999999999987541 11222 233333322 11233445555555555321 11112 233333
Q ss_pred hc-CCcEEEEEccC
Q 036236 191 LR-EKRFVLLLDDI 203 (557)
Q Consensus 191 l~-~k~~LlVlDdv 203 (557)
+. ...=++|+|-.
T Consensus 295 l~~~~~D~VLIDTa 308 (432)
T PRK12724 295 LARDGSELILIDTA 308 (432)
T ss_pred HHhCCCCEEEEeCC
Confidence 33 23346888954
No 384
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=95.90 E-value=0.02 Score=54.10 Aligned_cols=98 Identities=11% Similarity=0.202 Sum_probs=60.3
Q ss_pred CcccchhHHHHHHHHHHhc---c---CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHH
Q 036236 90 PTIVGLQSQLEQVWRCLVV---E---ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQED 163 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~---~---~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 163 (557)
..++|..-..+.++..+.+ + .++-+++.+|.+|+||.-.++.+++......-. ......
T Consensus 82 ~~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~---------------S~~V~~ 146 (344)
T KOG2170|consen 82 RALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLR---------------SPFVHH 146 (344)
T ss_pred HHhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhcccc---------------chhHHH
Confidence 4578887777777777763 2 366789999999999999999998887321111 112222
Q ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHHh----c-CCcEEEEEccCCCc
Q 036236 164 IGKKIGLFDDSWKSKSVEEKAVDIFRSL----R-EKRFVLLLDDIWER 206 (557)
Q Consensus 164 i~~~l~~~~~~~~~~~~~~~~~~l~~~l----~-~k~~LlVlDdv~~~ 206 (557)
+...+..+. ...++.-..+|+.++ + -++-|+|+|+++..
T Consensus 147 fvat~hFP~----~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 147 FVATLHFPH----ASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred hhhhccCCC----hHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 333333332 222333333333333 3 27899999999753
No 385
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=95.89 E-value=0.014 Score=52.94 Aligned_cols=44 Identities=23% Similarity=0.222 Sum_probs=34.3
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
+.++|.+..+..+.-... +..-+.++|++|+|||++|+.+..-.
T Consensus 3 ~dI~GQe~aKrAL~iAAa---G~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAA---GGHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp CCSSSTHHHHHHHHHHHH---CC--EEEES-CCCTHHHHHHHHHHCS
T ss_pred hhhcCcHHHHHHHHHHHc---CCCCeEEECCCCCCHHHHHHHHHHhC
Confidence 467899988888887776 35789999999999999999987654
No 386
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.89 E-value=0.045 Score=55.60 Aligned_cols=27 Identities=26% Similarity=0.453 Sum_probs=23.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
+....++|+|++|.||||||+.+..-.
T Consensus 360 ~~G~~lgIIGPSgSGKSTLaR~lvG~w 386 (580)
T COG4618 360 QAGEALGIIGPSGSGKSTLARLLVGIW 386 (580)
T ss_pred cCCceEEEECCCCccHHHHHHHHHccc
Confidence 366789999999999999999986553
No 387
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.89 E-value=0.022 Score=58.06 Aligned_cols=90 Identities=21% Similarity=0.224 Sum_probs=50.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHh-----CCCCCCCCCCCHH---
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKI-----GLFDDSWKSKSVE--- 181 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l-----~~~~~~~~~~~~~--- 181 (557)
.....++|+|..|+|||||++.+.... ....+++++.-.+..++..+....+... +.-.. .+.....
T Consensus 163 ~~Gqri~I~G~SGsGKTTLL~~Ia~l~----~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~q-sd~~~~~r~~ 237 (450)
T PRK06002 163 CAGQRIGIFAGSGVGKSTLLAMLARAD----AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVAT-SDESPMMRRL 237 (450)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC----CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEc-CCCCHHHHHH
Confidence 356789999999999999999887654 1223455544333444554444333322 11110 0111111
Q ss_pred --HHHHHHHHHh--cCCcEEEEEccCC
Q 036236 182 --EKAVDIFRSL--REKRFVLLLDDIW 204 (557)
Q Consensus 182 --~~~~~l~~~l--~~k~~LlVlDdv~ 204 (557)
.....+.+++ +++.+|+++||+-
T Consensus 238 ~~~~a~~iAEyfrd~G~~Vll~~DslT 264 (450)
T PRK06002 238 APLTATAIAEYFRDRGENVLLIVDSVT 264 (450)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchH
Confidence 1222233444 5789999999983
No 388
>PRK06217 hypothetical protein; Validated
Probab=95.87 E-value=0.014 Score=52.83 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 036236 114 IIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 114 vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
.|.|.|.+|+||||+|+.+....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999887
No 389
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.87 E-value=0.017 Score=48.67 Aligned_cols=40 Identities=20% Similarity=0.267 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhcc-CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 97 SQLEQVWRCLVVE-ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 97 ~~~~~l~~~L~~~-~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
++..++-+.|... ....+|.+.|.-|.||||+++.+++..
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3444444444421 356799999999999999999999987
No 390
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.86 E-value=0.05 Score=54.14 Aligned_cols=89 Identities=20% Similarity=0.125 Sum_probs=54.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCcc-CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDL-RLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFR 189 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 189 (557)
..+++.|+|+.|+||||++..++.... .. -..+.+++..... ....-++..++.++.+.. ...+..+....+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~-~~--g~~V~lItaDtyR~gAveQLk~yae~lgvpv~--~~~dp~dL~~al~~ 279 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLL-KQ--NRTVGFITTDTFRSGAVEQFQGYADKLDVELI--VATSPAELEEAVQY 279 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-Hc--CCeEEEEeCCccCccHHHHHHHHhhcCCCCEE--ecCCHHHHHHHHHH
Confidence 568999999999999999999887652 12 2346666654332 234455666666665432 22345555444433
Q ss_pred Hhc-CCcEEEEEccCC
Q 036236 190 SLR-EKRFVLLLDDIW 204 (557)
Q Consensus 190 ~l~-~k~~LlVlDdv~ 204 (557)
.-. +..=++++|-.-
T Consensus 280 l~~~~~~D~VLIDTAG 295 (407)
T PRK12726 280 MTYVNCVDHILIDTVG 295 (407)
T ss_pred HHhcCCCCEEEEECCC
Confidence 321 344578888873
No 391
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.85 E-value=0.048 Score=57.41 Aligned_cols=98 Identities=16% Similarity=0.103 Sum_probs=57.7
Q ss_pred HHHHHHHhcc-CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCC----
Q 036236 100 EQVWRCLVVE-ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDS---- 174 (557)
Q Consensus 100 ~~l~~~L~~~-~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---- 174 (557)
..+.+.|... ....++.|.|++|+|||||+.++..... ..-..++++.... +..++.... +.++.+...
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~---~~ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~ 323 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENAC---ANKERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQ 323 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhC
Confidence 4455555421 3678999999999999999999988762 2334567766554 345555553 455543211
Q ss_pred ---------CCCCCHHHHHHHHHHHhcC-CcEEEEEccC
Q 036236 175 ---------WKSKSVEEKAVDIFRSLRE-KRFVLLLDDI 203 (557)
Q Consensus 175 ---------~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv 203 (557)
......++....+.+.+.. +.-.+|+|.+
T Consensus 324 g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi 362 (484)
T TIGR02655 324 GLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSL 362 (484)
T ss_pred CcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCH
Confidence 0112234455555555543 4446677765
No 392
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=95.85 E-value=0.028 Score=57.62 Aligned_cols=93 Identities=18% Similarity=0.280 Sum_probs=58.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCcc-CHHHHHHHHHHHhCCCCC-----CCCCCCHH--
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDL-RLEKIQEDIGKKIGLFDD-----SWKSKSVE-- 181 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~-----~~~~~~~~-- 181 (557)
....-++|.|.+|+|||||+.++..... . .+-+.++++-++... .+.++.+++...=.+... ..+.....
T Consensus 142 gkGQR~gIfa~~GvGKt~Ll~~i~~~~~-~-~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~ 219 (463)
T PRK09280 142 AKGGKIGLFGGAGVGKTVLIQELINNIA-K-EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARL 219 (463)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHHH-h-cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 4677899999999999999999877762 1 223467777776543 456666666653222110 00111111
Q ss_pred ---HHHHHHHHHh---cCCcEEEEEccCC
Q 036236 182 ---EKAVDIFRSL---REKRFVLLLDDIW 204 (557)
Q Consensus 182 ---~~~~~l~~~l---~~k~~LlVlDdv~ 204 (557)
..+..+.+++ +++++||++|++-
T Consensus 220 ~a~~~a~tiAEyfrd~~G~~VLll~DslT 248 (463)
T PRK09280 220 RVALTGLTMAEYFRDVEGQDVLLFIDNIF 248 (463)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEecchH
Confidence 1233355555 6799999999983
No 393
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=95.84 E-value=0.016 Score=59.26 Aligned_cols=93 Identities=23% Similarity=0.345 Sum_probs=58.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCcc-CHHHHHHHHHHHhCCCCC-----CCCCCCHH--
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDL-RLEKIQEDIGKKIGLFDD-----SWKSKSVE-- 181 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~-----~~~~~~~~-- 181 (557)
....-++|.|.+|+|||+|+.++..... ..+-+.++++-++... ...++.+++...-.+... ..+.....
T Consensus 136 gkGQr~~Ifg~~G~GKt~l~~~~~~~~~--~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~ 213 (449)
T TIGR03305 136 ERGGKAGLFGGAGVGKTVLLTEMIHNMV--GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARF 213 (449)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHHH--hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHH
Confidence 4677899999999999999999988762 2234678888886654 455666666543222110 00111111
Q ss_pred ---HHHHHHHHHh---cCCcEEEEEccCC
Q 036236 182 ---EKAVDIFRSL---REKRFVLLLDDIW 204 (557)
Q Consensus 182 ---~~~~~l~~~l---~~k~~LlVlDdv~ 204 (557)
..+..+.+++ +++.+|+++||+-
T Consensus 214 ~~~~~a~tiAEyfrd~~G~~VLl~~DslT 242 (449)
T TIGR03305 214 RVGHTALTMAEYFRDDEKQDVLLLIDNIF 242 (449)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEecChH
Confidence 1233345555 4589999999983
No 394
>PRK05439 pantothenate kinase; Provisional
Probab=95.84 E-value=0.076 Score=51.80 Aligned_cols=27 Identities=30% Similarity=0.329 Sum_probs=24.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
+...+|+|.|.+|+||||+|+.+....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999988765
No 395
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.83 E-value=0.0074 Score=54.79 Aligned_cols=26 Identities=35% Similarity=0.388 Sum_probs=23.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
+..+|+|.|++|+||||+|+.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998765
No 396
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.82 E-value=0.00019 Score=64.77 Aligned_cols=87 Identities=17% Similarity=0.111 Sum_probs=66.7
Q ss_pred cccccccceEEEccccccccccCC-CCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCccccCCCCC
Q 036236 446 AVKGWENVRRLSLMQNQIETLSEV-PTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVGMSKLGSL 524 (557)
Q Consensus 446 ~~~~~~~l~~l~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~i~~L~~L 524 (557)
.+-+.+....|+++.|.+..+... +.+..|..|+++.|. +..+|.+ ++.+..++.+++.+| ..+.+|.++++++++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq-~~~~~~d-~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQ-IKFLPKD-AKQQRETVNAASHKN-NHSQQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhh-HhhChhh-HHHHHHHHHHHhhcc-chhhCCccccccCCc
Confidence 344566777888888877655433 556677888888887 8888887 777888888888887 888888888888888
Q ss_pred CeeeccCCCCc
Q 036236 525 ELLDISHTFIK 535 (557)
Q Consensus 525 ~~L~l~~n~l~ 535 (557)
+++++..|.+.
T Consensus 114 k~~e~k~~~~~ 124 (326)
T KOG0473|consen 114 KKNEQKKTEFF 124 (326)
T ss_pred chhhhccCcch
Confidence 88888888643
No 397
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.82 E-value=0.025 Score=52.00 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=23.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhh
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNK 135 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~ 135 (557)
....+++|+|..|.|||||.+.+...
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 24 KKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35679999999999999999998876
No 398
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.80 E-value=0.54 Score=44.24 Aligned_cols=209 Identities=12% Similarity=0.157 Sum_probs=114.5
Q ss_pred cccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccC---CCCcceEEEEEeCCc----------c--
Q 036236 91 TIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLEN---PINFDCVIWVVVSKD----------L-- 155 (557)
Q Consensus 91 ~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~---~~~f~~~~wv~~~~~----------~-- 155 (557)
.+.++++....+.+... .++.....++|++|.||-|.+..+.++.... +-.-+..-|.+-+.. .
T Consensus 14 ~l~~~~e~~~~Lksl~~-~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHl 92 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSS-TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHL 92 (351)
T ss_pred hcccHHHHHHHHHHhcc-cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceE
Confidence 46777877777777766 6678899999999999999887776665211 112233344332221 1
Q ss_pred ---------CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcE-EEEEccCCCc--cccccccccCCCCCCCC
Q 036236 156 ---------RLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSLREKRF-VLLLDDIWER--VDLTKVGVPLPGPQNTT 223 (557)
Q Consensus 156 ---------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~--~~~~~l~~~l~~~~~~~ 223 (557)
.-+-+.++++..++.... . +.-..+.| ++|+-.+++. +....++.....-.+.
T Consensus 93 EitPSDaG~~DRvViQellKevAQt~q------i--------e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~- 157 (351)
T KOG2035|consen 93 EITPSDAGNYDRVVIQELLKEVAQTQQ------I--------ETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSN- 157 (351)
T ss_pred EeChhhcCcccHHHHHHHHHHHHhhcc------h--------hhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcC-
Confidence 112233333333321110 0 00112344 5566655432 1111222222222233
Q ss_pred cEEEEeeCChH-H-HhcccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHHHHHhcc
Q 036236 224 SKVVFTTRSID-V-CGSMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTIGRAMAC 301 (557)
Q Consensus 224 s~iliTtR~~~-v-~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~ 301 (557)
+|+|+...+-. + ...-+..-.++++..+++|....+...+...+...+ ++++.+|+++++|+---.-.+...++-
T Consensus 158 ~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp---~~~l~rIa~kS~~nLRrAllmlE~~~~ 234 (351)
T KOG2035|consen 158 CRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP---KELLKRIAEKSNRNLRRALLMLEAVRV 234 (351)
T ss_pred ceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc---HHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 77776433211 1 111112235789999999999999998877665444 478999999999985433333333221
Q ss_pred C----------CCHHHHHHHHHHHHhc
Q 036236 302 K----------RTAEEWRHAVEVLRRS 318 (557)
Q Consensus 302 ~----------~~~~~w~~~l~~l~~~ 318 (557)
+ -..-+|+.++.++...
T Consensus 235 ~n~~~~a~~~~i~~~dWe~~i~e~a~~ 261 (351)
T KOG2035|consen 235 NNEPFTANSQVIPKPDWEIYIQEIARV 261 (351)
T ss_pred ccccccccCCCCCCccHHHHHHHHHHH
Confidence 1 2355899888777554
No 399
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.79 E-value=0.023 Score=57.87 Aligned_cols=91 Identities=23% Similarity=0.257 Sum_probs=51.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCC-----CCCCCCHHH--
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDD-----SWKSKSVEE-- 182 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~-- 182 (557)
.....++|.|..|+|||||++.+.... . ....++...-.+...+.++.+..+..-++... ..+......
T Consensus 138 ~~Gq~i~I~G~sG~GKTtLl~~I~~~~---~-~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~ 213 (418)
T TIGR03498 138 CRGQRLGIFAGSGVGKSTLLSMLARNT---D-ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQ 213 (418)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhCCC---C-CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHH
Confidence 356789999999999999999888765 1 12233332223333455555554443222111 001111111
Q ss_pred ---HHHHHHHHh--cCCcEEEEEccCC
Q 036236 183 ---KAVDIFRSL--REKRFVLLLDDIW 204 (557)
Q Consensus 183 ---~~~~l~~~l--~~k~~LlVlDdv~ 204 (557)
.+..+.+++ +++.+||++||+-
T Consensus 214 a~~~a~~iAEyfrd~G~~Vll~~DslT 240 (418)
T TIGR03498 214 AAYTATAIAEYFRDQGKDVLLLMDSVT 240 (418)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchh
Confidence 222344554 5789999999983
No 400
>PRK04040 adenylate kinase; Provisional
Probab=95.76 E-value=0.0084 Score=54.33 Aligned_cols=25 Identities=36% Similarity=0.586 Sum_probs=22.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 112 VGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 112 ~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..+|+|+|++|+||||+++.+....
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999887
No 401
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.75 E-value=0.021 Score=51.61 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=23.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
....+++|.|..|.|||||++.++...
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 24 RAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999998775
No 402
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.75 E-value=0.015 Score=52.54 Aligned_cols=38 Identities=32% Similarity=0.395 Sum_probs=30.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeC
Q 036236 112 VGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVS 152 (557)
Q Consensus 112 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~ 152 (557)
.+++.|+|+.|+|||||++.+.... ...|..+++.+..
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~---~~~~~~~v~~TTR 39 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF---PDKFGRVVSHTTR 39 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS---TTTEEEEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc---ccccccceeeccc
Confidence 5789999999999999999999987 5667655555443
No 403
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.74 E-value=0.0088 Score=53.48 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=23.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
....|.|+|++|+||||+|+.++...
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999999986
No 404
>PRK00625 shikimate kinase; Provisional
Probab=95.73 E-value=0.008 Score=53.57 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 036236 114 IIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 114 vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
.|.|+|++|+||||+++.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998886
No 405
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.73 E-value=0.022 Score=51.23 Aligned_cols=23 Identities=35% Similarity=0.738 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 036236 114 IIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 114 vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
+|+|.|.+|+||||||+.+....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999887
No 406
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.70 E-value=0.013 Score=56.35 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=41.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCC
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGL 170 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 170 (557)
+..+++.|+|.+|+|||+++.++.... ......++||+.... ...+.+...+ ++.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~---~~~ge~vlyvs~~e~--~~~l~~~~~~-~g~ 75 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEG---AREGEPVLYVSTEES--PEELLENARS-FGW 75 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHH---HhcCCcEEEEEecCC--HHHHHHHHHH-cCC
Confidence 578999999999999999999998887 334778999988765 3444444433 443
No 407
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.68 E-value=0.0076 Score=54.49 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 036236 114 IIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 114 vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
+|.|+|++|+||||+|+.++...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998876
No 408
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=0.26 Score=45.43 Aligned_cols=162 Identities=20% Similarity=0.270 Sum_probs=85.5
Q ss_pred cccchhHHHHHHHHHHhc------------cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHH
Q 036236 91 TIVGLQSQLEQVWRCLVV------------EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLE 158 (557)
Q Consensus 91 ~~vGr~~~~~~l~~~L~~------------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 158 (557)
.+=|.+-.++++.+...- -+..+-|.++|++|.|||-||++|+++- ...| +.+...
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t---~a~f-----irvvgs---- 223 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAF-----IRVVGS---- 223 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc---chhe-----eeeccH----
Confidence 345777777777776541 1467889999999999999999999986 3333 332221
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-cCCcEEEEEccCCCc------------cccccc----cccCCCCC-
Q 036236 159 KIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSL-REKRFVLLLDDIWER------------VDLTKV----GVPLPGPQ- 220 (557)
Q Consensus 159 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~------------~~~~~l----~~~l~~~~- 220 (557)
++.+. .+|-. ......+.+.- .+-+.++.+|.++.- .+...+ +....+..
T Consensus 224 efvqk---ylgeg---------prmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq 291 (408)
T KOG0727|consen 224 EFVQK---YLGEG---------PRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQ 291 (408)
T ss_pred HHHHH---HhccC---------cHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCc
Confidence 11111 12211 11222233332 346788899988531 011111 11111111
Q ss_pred CCCcEEEEeeCChH-----HHhcccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHH
Q 036236 221 NTTSKVVFTTRSID-----VCGSMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVE 276 (557)
Q Consensus 221 ~~~s~iliTtR~~~-----v~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~ 276 (557)
..+.+||..|.... +.+.-.-++.++.+--+..+-.-.|............-+++.
T Consensus 292 ~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~ 352 (408)
T KOG0727|consen 292 TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLED 352 (408)
T ss_pred ccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHH
Confidence 12267777665322 222223355677775556666666776665544444444444
No 409
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.67 E-value=0.011 Score=54.92 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 036236 112 VGIIGLYGMGGVGKTTLLTHINN 134 (557)
Q Consensus 112 ~~vv~I~G~~GiGKTtLa~~v~~ 134 (557)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999999874
No 410
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.67 E-value=0.018 Score=56.31 Aligned_cols=47 Identities=23% Similarity=0.355 Sum_probs=42.4
Q ss_pred CcccchhHHHHHHHHHHhc-----cCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 90 PTIVGLQSQLEQVWRCLVV-----EESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~-----~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..|+|.++.++++++.+.. +...+++.+.|+.|.||||||..+.+-+
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4799999999999999974 3577999999999999999999998887
No 411
>PRK05922 type III secretion system ATPase; Validated
Probab=95.67 E-value=0.032 Score=56.80 Aligned_cols=90 Identities=14% Similarity=0.218 Sum_probs=51.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCC-ccCHHHHHHHHHHHhCCCCCC-----CCCCCHH--
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSK-DLRLEKIQEDIGKKIGLFDDS-----WKSKSVE-- 181 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~-- 181 (557)
.....++|.|..|+|||||.+.+.... ..+....+.++. .......+.+..........- .+.....
T Consensus 155 ~~GqrigI~G~nG~GKSTLL~~Ia~~~-----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~ 229 (434)
T PRK05922 155 GKGQRIGVFSEPGSGKSSLLSTIAKGS-----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKV 229 (434)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhccC-----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHH
Confidence 456679999999999999999998764 123333333433 233445555554433221110 0111111
Q ss_pred ---HHHHHHHHHh--cCCcEEEEEccCC
Q 036236 182 ---EKAVDIFRSL--REKRFVLLLDDIW 204 (557)
Q Consensus 182 ---~~~~~l~~~l--~~k~~LlVlDdv~ 204 (557)
..+..+.+++ +++++|+++||+-
T Consensus 230 ~a~~~a~tiAEyfrd~G~~VLl~~DslT 257 (434)
T PRK05922 230 IAGRAAMTIAEYFRDQGHRVLFIMDSLS 257 (434)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeccchh
Confidence 1222344454 5799999999983
No 412
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.67 E-value=0.064 Score=54.64 Aligned_cols=88 Identities=23% Similarity=0.290 Sum_probs=48.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCC-ccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSK-DLRLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFR 189 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 189 (557)
...+++++|+.|+||||++..++... ........+..+.... .....+-+..+++.++.+.. ...+..+....+ .
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~-~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~--~v~~~~dl~~al-~ 265 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARA-VIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVR--SIKDIADLQLML-H 265 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCcee--cCCCHHHHHHHH-H
Confidence 46799999999999999999887654 1112223344444332 12333445566666665542 122333333222 2
Q ss_pred HhcCCcEEEEEccC
Q 036236 190 SLREKRFVLLLDDI 203 (557)
Q Consensus 190 ~l~~k~~LlVlDdv 203 (557)
.+.++ -++++|-.
T Consensus 266 ~l~~~-d~VLIDTa 278 (420)
T PRK14721 266 ELRGK-HMVLIDTV 278 (420)
T ss_pred HhcCC-CEEEecCC
Confidence 34443 35667765
No 413
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=95.66 E-value=0.041 Score=56.26 Aligned_cols=93 Identities=17% Similarity=0.286 Sum_probs=58.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCcc-CHHHHHHHHHHHhCCCCC-----CCCCCCHHH-
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDL-RLEKIQEDIGKKIGLFDD-----SWKSKSVEE- 182 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~-----~~~~~~~~~- 182 (557)
....-++|.|.+|+|||+|+.++..... ..+-+.++++-++... .+.++++++...=.+... ..+......
T Consensus 141 g~GQr~~If~~~G~GKt~L~~~~~~~~~--~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~ 218 (461)
T TIGR01039 141 AKGGKIGLFGGAGVGKTVLIQELINNIA--KEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARM 218 (461)
T ss_pred ccCCEEEeecCCCCChHHHHHHHHHHHH--hcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 4677899999999999999999887762 2223567777776643 456677766543222110 011111111
Q ss_pred ----HHHHHHHHh---cCCcEEEEEccCC
Q 036236 183 ----KAVDIFRSL---REKRFVLLLDDIW 204 (557)
Q Consensus 183 ----~~~~l~~~l---~~k~~LlVlDdv~ 204 (557)
.+..+.+++ +++.+||++||+-
T Consensus 219 ~a~~~a~tiAEyfrd~~G~~VLll~DslT 247 (461)
T TIGR01039 219 RVALTGLTMAEYFRDEQGQDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCeeEEEecchh
Confidence 233445555 4689999999983
No 414
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=95.66 E-value=0.31 Score=47.04 Aligned_cols=39 Identities=10% Similarity=-0.016 Sum_probs=30.8
Q ss_pred HHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 98 QLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 98 ~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
.-+++...+..+.-.....++|+.|+||+++|..++...
T Consensus 5 ~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~l 43 (290)
T PRK05917 5 AWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLI 43 (290)
T ss_pred HHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHH
Confidence 446677777744456778899999999999999988776
No 415
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=0.029 Score=51.93 Aligned_cols=46 Identities=24% Similarity=0.339 Sum_probs=35.7
Q ss_pred cccchhHHHHHHHHHHhc------------cCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 91 TIVGLQSQLEQVWRCLVV------------EESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 91 ~~vGr~~~~~~l~~~L~~------------~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
.+=|-.+++++|.+.... -+..+-|.++|++|.|||-+|++|+++-
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt 235 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT 235 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc
Confidence 445667778877766541 1356778999999999999999999986
No 416
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.65 E-value=0.032 Score=50.99 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=23.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
....+++|.|+.|.|||||.+.+..-.
T Consensus 33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 466799999999999999999997754
No 417
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=95.65 E-value=0.017 Score=57.25 Aligned_cols=46 Identities=20% Similarity=0.317 Sum_probs=38.8
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
+.+||.+..+..+.-.+. ++...-|.|.|..|+|||||++.+..-.
T Consensus 4 ~~ivgq~~~~~al~~~~~-~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVI-DPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred cccccHHHHHHHHHHHhc-CCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 457999999988877777 5666778899999999999999997665
No 418
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=95.65 E-value=0.013 Score=58.02 Aligned_cols=46 Identities=20% Similarity=0.333 Sum_probs=39.9
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
+.+||.++.+..|...+. ++...-|.|.|..|+||||+|+.+++-.
T Consensus 17 ~~ivGq~~~k~al~~~~~-~p~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 17 TAIVGQEEMKLALILNVI-DPKIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred HHHhChHHHHHHHHHhcc-CCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 467999999999888877 6777778899999999999999997765
No 419
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.64 E-value=0.039 Score=56.68 Aligned_cols=87 Identities=23% Similarity=0.251 Sum_probs=49.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCcc-CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 036236 112 VGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDL-RLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRS 190 (557)
Q Consensus 112 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 190 (557)
.+++.++|++|+||||++..++.... .......+..++..... .....+....+.++.+.. ...+..+....+.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~-~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~--~~~~~~~l~~~l~~- 296 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYA-LLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE--VVYDPKELAKALEQ- 296 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH-HhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE--ccCCHHhHHHHHHH-
Confidence 46899999999999999998877651 01222356666654321 122334444555555432 12233444444433
Q ss_pred hcCCcEEEEEccC
Q 036236 191 LREKRFVLLLDDI 203 (557)
Q Consensus 191 l~~k~~LlVlDdv 203 (557)
+. ..=++++|..
T Consensus 297 ~~-~~DlVlIDt~ 308 (424)
T PRK05703 297 LR-DCDVILIDTA 308 (424)
T ss_pred hC-CCCEEEEeCC
Confidence 33 3458888976
No 420
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.64 E-value=0.073 Score=52.64 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 036236 115 IGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 115 v~I~G~~GiGKTtLa~~v~~~~ 136 (557)
+++.|++|.||||+++.+.+..
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l 23 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATL 23 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999886
No 421
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.64 E-value=0.018 Score=50.20 Aligned_cols=36 Identities=25% Similarity=0.349 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 97 SQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 97 ~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
+.+++|.+++. + ++++++|..|+|||||+..+....
T Consensus 24 ~g~~~l~~~l~---~-k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 24 EGIEELKELLK---G-KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTHHHHHHHHT---T-SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCHHHHHHHhc---C-CEEEEECCCCCCHHHHHHHHHhhc
Confidence 45777888887 3 899999999999999999998874
No 422
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=95.62 E-value=0.045 Score=55.81 Aligned_cols=95 Identities=12% Similarity=0.136 Sum_probs=57.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhccc----------CCCCcceEEEEEeCCccCHHHHHHHHHHHhC-CCCC-----
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLE----------NPINFDCVIWVVVSKDLRLEKIQEDIGKKIG-LFDD----- 173 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~----------~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~-~~~~----- 173 (557)
....-++|.|.+|+|||+|+.++.+.... .+..-..++++.+++.....+.+...+..-+ +...
T Consensus 139 g~GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~a 218 (466)
T TIGR01040 139 ARGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLN 218 (466)
T ss_pred ccCCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEE
Confidence 46678999999999999999999877520 0011115677777777666665555555544 2110
Q ss_pred CCCCCCHHH-----HHHHHHHHhc---CCcEEEEEccCC
Q 036236 174 SWKSKSVEE-----KAVDIFRSLR---EKRFVLLLDDIW 204 (557)
Q Consensus 174 ~~~~~~~~~-----~~~~l~~~l~---~k~~LlVlDdv~ 204 (557)
..+...... .+..+.++++ ++.+|+++||+-
T Consensus 219 tsd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslT 257 (466)
T TIGR01040 219 LANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMS 257 (466)
T ss_pred CCCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChH
Confidence 001111111 2223445554 599999999983
No 423
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.62 E-value=0.014 Score=53.09 Aligned_cols=53 Identities=17% Similarity=0.179 Sum_probs=36.4
Q ss_pred chhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEE
Q 036236 94 GLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVV 150 (557)
Q Consensus 94 Gr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 150 (557)
.+..+-...++.|. ...+|.+.|++|.|||.||.+.+-+. -..+.++.++++.
T Consensus 4 p~~~~Q~~~~~al~---~~~~v~~~G~AGTGKT~LA~a~Al~~-v~~g~~~kiii~R 56 (205)
T PF02562_consen 4 PKNEEQKFALDALL---NNDLVIVNGPAGTGKTFLALAAALEL-VKEGEYDKIIITR 56 (205)
T ss_dssp --SHHHHHHHHHHH---H-SEEEEE--TTSSTTHHHHHHHHHH-HHTTS-SEEEEEE
T ss_pred CCCHHHHHHHHHHH---hCCeEEEECCCCCcHHHHHHHHHHHH-HHhCCCcEEEEEe
Confidence 44556666777776 56799999999999999999988765 2347788887774
No 424
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.61 E-value=0.032 Score=54.51 Aligned_cols=44 Identities=16% Similarity=0.236 Sum_probs=35.3
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
+.++=..+....+..++. ..+.|.|.|++|+||||+|+.++...
T Consensus 45 ~~y~f~~~~~~~vl~~l~---~~~~ilL~G~pGtGKTtla~~lA~~l 88 (327)
T TIGR01650 45 PAYLFDKATTKAICAGFA---YDRRVMVQGYHGTGKSTHIEQIAARL 88 (327)
T ss_pred CCccCCHHHHHHHHHHHh---cCCcEEEEeCCCChHHHHHHHHHHHH
Confidence 455555566677777776 34579999999999999999999987
No 425
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.61 E-value=0.01 Score=53.18 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 112 VGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 112 ~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
.++|.+.|++|+||||+|+.+....
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998875
No 426
>PRK06936 type III secretion system ATPase; Provisional
Probab=95.61 E-value=0.033 Score=56.76 Aligned_cols=90 Identities=22% Similarity=0.307 Sum_probs=54.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCcc-CHHHHHHHHHHHhCCCCC-----CCCCCCHHH-
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDL-RLEKIQEDIGKKIGLFDD-----SWKSKSVEE- 182 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~-----~~~~~~~~~- 182 (557)
.+...++|.|..|+|||||.+.+++.. ..+.++++-+++.. .+.++.+..+..-++... ..+......
T Consensus 160 ~~Gq~~~I~G~sG~GKStLl~~Ia~~~-----~~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~ 234 (439)
T PRK06936 160 GEGQRMGIFAAAGGGKSTLLASLIRSA-----EVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERA 234 (439)
T ss_pred cCCCEEEEECCCCCChHHHHHHHhcCC-----CCCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHH
Confidence 466789999999999999999998875 23567777776653 445555443332221110 001111111
Q ss_pred ----HHHHHHHHh--cCCcEEEEEccCC
Q 036236 183 ----KAVDIFRSL--REKRFVLLLDDIW 204 (557)
Q Consensus 183 ----~~~~l~~~l--~~k~~LlVlDdv~ 204 (557)
.+..+.+++ +++++|+++||+-
T Consensus 235 ~a~~~a~tiAEyfrd~G~~Vll~~DslT 262 (439)
T PRK06936 235 KAGFVATSIAEYFRDQGKRVLLLMDSVT 262 (439)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeccchh
Confidence 122234444 5799999999983
No 427
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.61 E-value=0.03 Score=52.63 Aligned_cols=67 Identities=33% Similarity=0.370 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhccc----CCCCcceEEEEEeCCccCHHHHHHHHHH
Q 036236 97 SQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLE----NPINFDCVIWVVVSKDLRLEKIQEDIGK 166 (557)
Q Consensus 97 ~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~----~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 166 (557)
...+.+...+. ...+..|.|++|.|||+++..+...... .....+..+-++...+..+..++..+..
T Consensus 5 ~Q~~Ai~~~~~---~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 5 SQREAIQSALS---SNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp HHHHHHHHHCT---SSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHc---CCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 34455555554 2237899999999999877776666511 0123334444445544455555555543
No 428
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=95.60 E-value=0.062 Score=52.82 Aligned_cols=90 Identities=21% Similarity=0.259 Sum_probs=51.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeC-CccCHHHHHHHHHHHhCCCCC-----CCCCCCHH--
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVS-KDLRLEKIQEDIGKKIGLFDD-----SWKSKSVE-- 181 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~-- 181 (557)
.....++|.|..|+|||||++.+.... . .+..+...++ +..++..+.......-++... ..+.....
T Consensus 67 ~~Gqri~I~G~sG~GKTtLl~~Ia~~~-~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~ 141 (326)
T cd01136 67 GKGQRLGIFAGSGVGKSTLLGMIARGT-T----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRV 141 (326)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhCCC-C----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHH
Confidence 456789999999999999999988765 1 2333344444 334555555555544322110 01111111
Q ss_pred ---HHHHHHHHHh--cCCcEEEEEccCC
Q 036236 182 ---EKAVDIFRSL--REKRFVLLLDDIW 204 (557)
Q Consensus 182 ---~~~~~l~~~l--~~k~~LlVlDdv~ 204 (557)
.....+.+++ +++.+|+++||+-
T Consensus 142 ~~~~~a~~~AEyfr~~g~~Vll~~Dslt 169 (326)
T cd01136 142 KAAYTATAIAEYFRDQGKDVLLLMDSLT 169 (326)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEeccch
Confidence 1122233333 5799999999983
No 429
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.59 E-value=0.012 Score=52.38 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 113 GIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 113 ~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
+.|.+.|.+|+||||+|+++++..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHH
Confidence 468899999999999999998887
No 430
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.59 E-value=0.075 Score=49.06 Aligned_cols=27 Identities=30% Similarity=0.447 Sum_probs=23.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
....+++|.|..|.|||||++.+..-.
T Consensus 32 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 32 KAGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 466799999999999999999997654
No 431
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.58 E-value=0.041 Score=60.79 Aligned_cols=47 Identities=21% Similarity=0.287 Sum_probs=38.7
Q ss_pred CcccchhHHHHHHHHHHhc-cCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 90 PTIVGLQSQLEQVWRCLVV-EESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~-~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..++|+...+..+.+.+.. ......|.|+|..|+|||++|+.+++..
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 4689999988888777663 2455689999999999999999998875
No 432
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.58 E-value=0.047 Score=58.45 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=24.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
+....++|+|+.|.|||||++.+..-.
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 577899999999999999999997765
No 433
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.58 E-value=0.022 Score=60.56 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=38.5
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..++|.+..++.+...+. ......|.|+|++|+|||++|+.+++..
T Consensus 65 ~~iiGqs~~i~~l~~al~-~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALC-GPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HHeeCcHHHHHHHHHHHh-CCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999988776 4455677899999999999999998753
No 434
>PTZ00185 ATPase alpha subunit; Provisional
Probab=95.56 E-value=0.077 Score=54.65 Aligned_cols=95 Identities=16% Similarity=0.075 Sum_probs=54.0
Q ss_pred CCeeEEEEEcCCCCcHHHHH-HHHHhhccc----CCCCcceEEEEEeCCccCHHHHHHHHHHHhC-CCCC-----CCCCC
Q 036236 110 ESVGIIGLYGMGGVGKTTLL-THINNKFLE----NPINFDCVIWVVVSKDLRLEKIQEDIGKKIG-LFDD-----SWKSK 178 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa-~~v~~~~~~----~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~-~~~~-----~~~~~ 178 (557)
+...-++|.|..|+|||+|| ..+.+.... ....-+.++++.+++..+...-+.+.++.-+ +... ..+..
T Consensus 187 GRGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep 266 (574)
T PTZ00185 187 GRGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEP 266 (574)
T ss_pred cCCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCC
Confidence 46678999999999999997 556665310 1123457888888876543322333334333 2111 00111
Q ss_pred CHHH-----HHHHHHHHh--cCCcEEEEEccCC
Q 036236 179 SVEE-----KAVDIFRSL--REKRFVLLLDDIW 204 (557)
Q Consensus 179 ~~~~-----~~~~l~~~l--~~k~~LlVlDdv~ 204 (557)
...+ ....+.+++ +++.+|+|+||+-
T Consensus 267 ~~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLT 299 (574)
T PTZ00185 267 AGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLS 299 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCch
Confidence 1111 122233333 5789999999984
No 435
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.56 E-value=0.017 Score=57.77 Aligned_cols=111 Identities=16% Similarity=0.168 Sum_probs=60.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRS 190 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 190 (557)
....|.|.|+.|.||||+++.+.+.. .......++. +..+... ..... ..+ ....+ ...........+...
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i---~~~~~~~i~t-iEdp~E~--~~~~~-~~~-i~q~e-vg~~~~~~~~~l~~~ 191 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYI---NKNAAGHIIT-IEDPIEY--VHRNK-RSL-INQRE-VGLDTLSFANALRAA 191 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhh---CcCCCCEEEE-EcCChhh--hccCc-cce-EEccc-cCCCCcCHHHHHHHh
Confidence 45789999999999999999988876 2233334433 2222111 00000 000 00000 011112345567778
Q ss_pred hcCCcEEEEEccCCCccccccccccCCCCCCCCcEEEEeeCChH
Q 036236 191 LREKRFVLLLDDIWERVDLTKVGVPLPGPQNTTSKVVFTTRSID 234 (557)
Q Consensus 191 l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~s~iliTtR~~~ 234 (557)
++..+=.|++|++.+.+........ ...| ..++.|.....
T Consensus 192 lr~~pd~i~vgEird~~~~~~~l~a---a~tG-h~v~~T~Ha~~ 231 (343)
T TIGR01420 192 LREDPDVILIGEMRDLETVELALTA---AETG-HLVFGTLHTNS 231 (343)
T ss_pred hccCCCEEEEeCCCCHHHHHHHHHH---HHcC-CcEEEEEcCCC
Confidence 8889999999999766554432221 1233 44666665433
No 436
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.55 E-value=0.071 Score=47.27 Aligned_cols=80 Identities=20% Similarity=0.319 Sum_probs=45.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcC
Q 036236 114 IIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSLRE 193 (557)
Q Consensus 114 vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 193 (557)
++.|.|.+|+|||++|.++.... ...++++......+. ++.+.|..........+... +....+.+.+..
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~------~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w~t~---E~~~~l~~~l~~ 70 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAEL------GGPVTYIATAEAFDD-EMAERIARHRKRRPAHWRTI---ETPRDLVSALKE 70 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc------CCCeEEEEccCcCCH-HHHHHHHHHHHhCCCCceEe---ecHHHHHHHHHh
Confidence 36799999999999999987652 235666666665554 34444433222222222222 222333333321
Q ss_pred --CcEEEEEccC
Q 036236 194 --KRFVLLLDDI 203 (557)
Q Consensus 194 --k~~LlVlDdv 203 (557)
+.-.+++|.+
T Consensus 71 ~~~~~~VLIDcl 82 (169)
T cd00544 71 LDPGDVVLIDCL 82 (169)
T ss_pred cCCCCEEEEEcH
Confidence 2347999997
No 437
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.55 E-value=0.0098 Score=51.61 Aligned_cols=20 Identities=40% Similarity=0.650 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 036236 114 IIGLYGMGGVGKTTLLTHIN 133 (557)
Q Consensus 114 vv~I~G~~GiGKTtLa~~v~ 133 (557)
.|+|.|.||+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 438
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=95.53 E-value=0.16 Score=49.95 Aligned_cols=59 Identities=24% Similarity=0.260 Sum_probs=42.0
Q ss_pred HHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCcc-CHHHHHHHHH
Q 036236 102 VWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDL-RLEKIQEDIG 165 (557)
Q Consensus 102 l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~ 165 (557)
+++.+..-.+...++|.|..|+|||+|++++.+.. .-+.++++-+++.. .+.+++.++-
T Consensus 147 vID~l~Pi~kGqr~~I~G~~G~GKT~L~~~Iak~~-----~~dvvVyv~iGERg~Ev~e~l~ef~ 206 (369)
T cd01134 147 VLDTLFPVVKGGTAAIPGPFGCGKTVIQQSLSKYS-----NSDIVIYVGCGERGNEMTEVLEEFP 206 (369)
T ss_pred hhhccccccCCCEEEEECCCCCChHHHHHHHHhCC-----CCCEEEEEEeCCChHHHHHHHHHHH
Confidence 44444433466789999999999999999998874 23568888887653 4556666653
No 439
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.52 E-value=0.012 Score=53.01 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=24.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...+|+|-||=|+||||||+.++++.
T Consensus 3 ~~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 3 VAMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred cccEEEEecccccCHHHHHHHHHHHh
Confidence 35789999999999999999999998
No 440
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=95.51 E-value=0.056 Score=51.41 Aligned_cols=90 Identities=12% Similarity=0.119 Sum_probs=51.6
Q ss_pred CCeeEEEEEcCCCCcHHHHH-HHHHhhcccCCCCcceE-EEEEeCCcc-CHHHHHHHHHHHhCCCC-----CCCCCCCHH
Q 036236 110 ESVGIIGLYGMGGVGKTTLL-THINNKFLENPINFDCV-IWVVVSKDL-RLEKIQEDIGKKIGLFD-----DSWKSKSVE 181 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa-~~v~~~~~~~~~~f~~~-~wv~~~~~~-~~~~~~~~i~~~l~~~~-----~~~~~~~~~ 181 (557)
.+..-++|.|.+|+|||+|| ..+.+.. .-+.+ +++-+++.. ...++.+.+...-.+.. ...+.....
T Consensus 67 grGQr~~Ifg~~g~GKt~L~l~~i~~~~-----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~ 141 (274)
T cd01132 67 GRGQRELIIGDRQTGKTAIAIDTIINQK-----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPL 141 (274)
T ss_pred ccCCEEEeeCCCCCCccHHHHHHHHHhc-----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhH
Confidence 46678999999999999996 5555542 23444 666666553 45666666654322111 001111111
Q ss_pred H-----HHHHHHHHh--cCCcEEEEEccCC
Q 036236 182 E-----KAVDIFRSL--REKRFVLLLDDIW 204 (557)
Q Consensus 182 ~-----~~~~l~~~l--~~k~~LlVlDdv~ 204 (557)
. .+-.+.+++ +++.+|+++||+-
T Consensus 142 r~~a~~~a~aiAE~fr~~G~~Vlvl~DslT 171 (274)
T cd01132 142 QYLAPYTGCAMGEYFMDNGKHALIIYDDLS 171 (274)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEcChH
Confidence 1 122233333 5789999999983
No 441
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.50 E-value=0.17 Score=46.58 Aligned_cols=27 Identities=22% Similarity=0.433 Sum_probs=24.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
+...+++|.|+.|.|||||++.+..-.
T Consensus 29 ~~G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 29 PKGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 467799999999999999999998865
No 442
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.48 E-value=0.012 Score=52.98 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 113 GIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 113 ~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
.+++|+|++|+||||+++.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998876
No 443
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=95.48 E-value=0.018 Score=56.94 Aligned_cols=46 Identities=20% Similarity=0.364 Sum_probs=37.3
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
+.++|.+..++.+.-.+. +.+..-+.+.|.+|+||||+|+.+..-.
T Consensus 8 ~~i~Gq~~~~~~l~~~~~-~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAI-DPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred HHhCCHHHHHHHHHHHHh-ccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 467999999988775554 3445679999999999999999997765
No 444
>PF13245 AAA_19: Part of AAA domain
Probab=95.47 E-value=0.025 Score=42.61 Aligned_cols=26 Identities=27% Similarity=0.291 Sum_probs=19.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
+.+++.|.|++|.|||+++.......
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45678889999999996655544443
No 445
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.46 E-value=0.01 Score=53.42 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 036236 114 IIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 114 vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998886
No 446
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.46 E-value=0.022 Score=52.94 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 036236 114 IIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 114 vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
.|.|.|++|+||||+|+.++...
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998876
No 447
>PHA02774 E1; Provisional
Probab=95.46 E-value=0.033 Score=58.16 Aligned_cols=50 Identities=16% Similarity=0.112 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEe
Q 036236 97 SQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVV 151 (557)
Q Consensus 97 ~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 151 (557)
.-+..+..++...++...+.|+|++|+|||.+|..+.+-. . ...+.|+..
T Consensus 419 ~fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L---~--G~vi~fvN~ 468 (613)
T PHA02774 419 SFLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFL---K--GKVISFVNS 468 (613)
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh---C--CCEEEEEEC
Confidence 4456666666644566799999999999999999998886 1 234556654
No 448
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.45 E-value=0.087 Score=51.92 Aligned_cols=26 Identities=35% Similarity=0.551 Sum_probs=24.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...+++++|++|+||||++..++...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 56899999999999999999998887
No 449
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.45 E-value=0.01 Score=54.50 Aligned_cols=23 Identities=43% Similarity=0.661 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 036236 114 IIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 114 vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
+|+|.|++|+|||||++.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998775
No 450
>PRK09099 type III secretion system ATPase; Provisional
Probab=95.45 E-value=0.056 Score=55.34 Aligned_cols=91 Identities=22% Similarity=0.246 Sum_probs=53.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCC-----CCCCCCHH---
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDD-----SWKSKSVE--- 181 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~--- 181 (557)
.....++|.|..|+|||||++.++... . .-.++++..-.+...+.++.+.+...-++... ..+.....
T Consensus 161 ~~Gq~~~I~G~sG~GKTtLl~~ia~~~-~---~d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~ 236 (441)
T PRK09099 161 GEGQRMGIFAPAGVGKSTLMGMFARGT-Q---CDVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAK 236 (441)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC-C---CCeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHH
Confidence 467789999999999999999998765 1 11244444433444555665665543222110 00111111
Q ss_pred --HHHHHHHHHh--cCCcEEEEEccCC
Q 036236 182 --EKAVDIFRSL--REKRFVLLLDDIW 204 (557)
Q Consensus 182 --~~~~~l~~~l--~~k~~LlVlDdv~ 204 (557)
.....+.+++ +++.+|+++||+-
T Consensus 237 a~~~a~tiAEyfrd~G~~VLl~~DslT 263 (441)
T PRK09099 237 AAYVATAIAEYFRDRGLRVLLMMDSLT 263 (441)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchh
Confidence 1222344444 5789999999983
No 451
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.44 E-value=0.12 Score=50.08 Aligned_cols=53 Identities=19% Similarity=0.118 Sum_probs=37.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHH
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKK 167 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 167 (557)
...++.|.|.+|+||||++.+++.... ..+-..++|+++... ..++...+...
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~--~~~g~~vl~iS~E~~--~~~~~~r~~~~ 81 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLI--TQHGVRVGTISLEEP--VVRTARRLLGQ 81 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH--HhcCceEEEEEcccC--HHHHHHHHHHH
Confidence 566899999999999999999887762 222346888877653 34555555443
No 452
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.41 E-value=0.011 Score=51.47 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 036236 114 IIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 114 vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
++.|.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998875
No 453
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=95.41 E-value=0.061 Score=47.46 Aligned_cols=26 Identities=31% Similarity=0.429 Sum_probs=22.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
....+.|.|+.|+|||||.+.++.-.
T Consensus 27 ~Ge~~~i~G~NG~GKTtLLRilaGLl 52 (209)
T COG4133 27 AGEALQITGPNGAGKTTLLRILAGLL 52 (209)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHccc
Confidence 45688999999999999999998765
No 454
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.37 E-value=0.015 Score=52.13 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=23.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...+|+|.|.+|+||||+|+.++...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45699999999999999999999887
No 455
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.36 E-value=0.015 Score=55.81 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcc
Q 036236 113 GIIGLYGMGGVGKTTLLTHINNKFL 137 (557)
Q Consensus 113 ~vv~I~G~~GiGKTtLa~~v~~~~~ 137 (557)
+.|.|+|.+|+||||+|+++...+.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~ 26 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLE 26 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHH
Confidence 4689999999999999999999873
No 456
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.35 E-value=0.069 Score=55.35 Aligned_cols=89 Identities=22% Similarity=0.300 Sum_probs=49.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCC-ccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSK-DLRLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFR 189 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 189 (557)
...+++++|+.|+||||++..++.... .......+..+.... .....+-++...+.++.+... ..+..+....+ .
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~-~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~--~~~~~Dl~~aL-~ 330 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCV-MRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHA--VKDAADLRLAL-S 330 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHH-HhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeec--cCCchhHHHHH-H
Confidence 457999999999999999999987762 122122344554432 123344455566666654321 11222222222 2
Q ss_pred HhcCCcEEEEEccCC
Q 036236 190 SLREKRFVLLLDDIW 204 (557)
Q Consensus 190 ~l~~k~~LlVlDdv~ 204 (557)
.+.++ -.+++|-.-
T Consensus 331 ~L~d~-d~VLIDTaG 344 (484)
T PRK06995 331 ELRNK-HIVLIDTIG 344 (484)
T ss_pred hccCC-CeEEeCCCC
Confidence 33444 467777763
No 457
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.33 E-value=0.012 Score=50.86 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 036236 114 IIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 114 vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
+|.|.|++|+||||+|+.+....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 458
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.33 E-value=0.023 Score=52.60 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 036236 115 IGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 115 v~I~G~~GiGKTtLa~~v~~~~ 136 (557)
|.|.|++|+||||+|+.++..+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998876
No 459
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=95.32 E-value=0.064 Score=54.75 Aligned_cols=90 Identities=22% Similarity=0.257 Sum_probs=51.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCc-cCHHHHHHHHHHHhCCCC-----CCCCCCCHHH-
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKD-LRLEKIQEDIGKKIGLFD-----DSWKSKSVEE- 182 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~- 182 (557)
.....++|.|..|+|||||++.+.+.. ..+..+++.++.. ..+.+++.+....=.... ...+....+.
T Consensus 153 ~~GqrigI~G~sG~GKSTLL~~I~~~~-----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~ 227 (433)
T PRK07594 153 GEGQRVGIFSAPGVGKSTLLAMLCNAP-----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERV 227 (433)
T ss_pred CCCCEEEEECCCCCCccHHHHHhcCCC-----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHH
Confidence 467789999999999999999888764 2344555555543 344455555432110000 0001111111
Q ss_pred ----HHHHHHHHh--cCCcEEEEEccCC
Q 036236 183 ----KAVDIFRSL--REKRFVLLLDDIW 204 (557)
Q Consensus 183 ----~~~~l~~~l--~~k~~LlVlDdv~ 204 (557)
.+..+.+++ +++++||++||+-
T Consensus 228 ~a~~~a~tiAEyfrd~G~~VLl~~Dslt 255 (433)
T PRK07594 228 RALFVATTIAEFFRDNGKRVVLLADSLT 255 (433)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeCHH
Confidence 122344444 5789999999983
No 460
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.32 E-value=0.023 Score=48.67 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=27.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCC
Q 036236 113 GIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSK 153 (557)
Q Consensus 113 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 153 (557)
++|.|+|..|+|||||++.+.+... ...+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~--~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK--RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH--HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh--HcCCceEEEEEccC
Confidence 4799999999999999999999983 23455555555544
No 461
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.32 E-value=0.016 Score=33.42 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=18.0
Q ss_pred CCCCCeeeccCCCCcccChHHH
Q 036236 521 LGSLELLDISHTFIKELPEELK 542 (557)
Q Consensus 521 L~~L~~L~l~~n~l~~lP~~i~ 542 (557)
|++|++|+|++|+|+.+|.++.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 5678899999999999988753
No 462
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.32 E-value=0.016 Score=33.42 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=18.0
Q ss_pred CCCCCeeeccCCCCcccChHHH
Q 036236 521 LGSLELLDISHTFIKELPEELK 542 (557)
Q Consensus 521 L~~L~~L~l~~n~l~~lP~~i~ 542 (557)
|++|++|+|++|+|+.+|.++.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 5678899999999999988753
No 463
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.31 E-value=0.067 Score=58.92 Aligned_cols=102 Identities=19% Similarity=0.262 Sum_probs=65.6
Q ss_pred CcccchhHHHHHHHHHHhc------cC-CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHH
Q 036236 90 PTIVGLQSQLEQVWRCLVV------EE-SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQE 162 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~------~~-~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 162 (557)
..++|.++.+..|.+.+.. ++ ......+.|+.|+|||-||++++..+ -+..+..+-++++.. ..
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~---Fgse~~~IriDmse~------~e 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYV---FGSEENFIRLDMSEF------QE 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHH---cCCccceEEechhhh------hh
Confidence 3468888888888888873 11 45678899999999999999998887 233344444444432 22
Q ss_pred HHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcE-EEEEccCCC
Q 036236 163 DIGKKIGLFDDSWKSKSVEEKAVDIFRSLREKRF-VLLLDDIWE 205 (557)
Q Consensus 163 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~ 205 (557)
+.+.++.+ +.+. ..+...+|.+.++.++| +|+||||+.
T Consensus 633 -vskligsp-~gyv---G~e~gg~LteavrrrP~sVVLfdeIEk 671 (898)
T KOG1051|consen 633 -VSKLIGSP-PGYV---GKEEGGQLTEAVKRRPYSVVLFEEIEK 671 (898)
T ss_pred -hhhccCCC-cccc---cchhHHHHHHHHhcCCceEEEEechhh
Confidence 33333322 1111 22333467788888877 666899964
No 464
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.31 E-value=0.085 Score=50.04 Aligned_cols=52 Identities=13% Similarity=0.138 Sum_probs=36.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHH
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGK 166 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 166 (557)
...++.|.|.+|+|||+++.+++.+.. ...-..++|++... ...++...+..
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~--~~~g~~vly~s~E~--~~~~~~~r~~~ 63 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIA--KKQGKPVLFFSLEM--SKEQLLQRLLA 63 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH--HhCCCceEEEeCCC--CHHHHHHHHHH
Confidence 567999999999999999999877762 22234677776655 34556665543
No 465
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.30 E-value=0.036 Score=56.06 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=30.8
Q ss_pred HHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 98 QLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 98 ~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..+.+++.+. ......+.|.|.||+|||+|.+.+.+..
T Consensus 9 ~~~~v~~~~~-~~~~~~~fv~G~~GtGKs~l~~~i~~~~ 46 (364)
T PF05970_consen 9 VFDTVIEAIE-NEEGLNFFVTGPAGTGKSFLIKAIIDYL 46 (364)
T ss_pred HHHHHHHHHH-ccCCcEEEEEcCCCCChhHHHHHHHHHh
Confidence 3455556665 4567889999999999999999999887
No 466
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.30 E-value=0.014 Score=51.83 Aligned_cols=22 Identities=45% Similarity=0.609 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 036236 115 IGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 115 v~I~G~~GiGKTtLa~~v~~~~ 136 (557)
|.|.|.+|+|||||++.+++..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7899999999999999998887
No 467
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.30 E-value=0.0091 Score=65.99 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=21.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhh
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNK 135 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~ 135 (557)
+..+++|+|+.|.||||+.+.+...
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHH
Confidence 4579999999999999999988655
No 468
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.28 E-value=0.011 Score=30.21 Aligned_cols=17 Identities=41% Similarity=0.772 Sum_probs=10.3
Q ss_pred CCCcEEEeecCCCCccCC
Q 036236 498 PSLKVLKISNCGNIFQLP 515 (557)
Q Consensus 498 ~~L~~L~Ls~~~~~~~lP 515 (557)
++|+.|+|++| .+++||
T Consensus 1 ~~L~~L~l~~n-~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNN-RLTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCC-CCCCCc
Confidence 46888888888 677776
No 469
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=0.15 Score=46.68 Aligned_cols=62 Identities=16% Similarity=0.177 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhcCCcEEEEEccCCCcccccccc------ccCCCCCCCCcEEEEeeCChHHHhcccCCCce
Q 036236 181 EEKAVDIFRSLREKRFVLLLDDIWERVDLTKVG------VPLPGPQNTTSKVVFTTRSIDVCGSMESHRKF 245 (557)
Q Consensus 181 ~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~------~~l~~~~~~~s~iliTtR~~~v~~~~~~~~~~ 245 (557)
+.....+.+.+--++-+.|||..++--+.+.+. ..+.. .+ +-+++.|..+.++.....+.+|
T Consensus 149 EkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~--~~-~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 149 EKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALRE--EG-RGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred hHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhc--CC-CeEEEEecHHHHHhhcCCCEEE
Confidence 344556666666678899999987654444331 22222 23 5577777777887776555544
No 470
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.26 E-value=0.0021 Score=59.76 Aligned_cols=102 Identities=25% Similarity=0.205 Sum_probs=78.8
Q ss_pred cccceEEEccccccccccCCCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCc--cccCCCCCCee
Q 036236 450 WENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPV--GMSKLGSLELL 527 (557)
Q Consensus 450 ~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~--~i~~L~~L~~L 527 (557)
+.+++.|++.++.+..+.--..++.|.+|.|+-|. ++.+.+ +..|+.|+.|.|..| .|..|-. -+.+|++|++|
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNk-IssL~p--l~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNK-ISSLAP--LQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccc-cccchh--HHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhH
Confidence 45677888888888877666789999999999998 777765 788999999999998 7776643 56889999999
Q ss_pred eccCCCCc-ccCh-----HHHhHhhhhhcCCCCC
Q 036236 528 DISHTFIK-ELPE-----ELKKLLEAIQRAPRPD 555 (557)
Q Consensus 528 ~l~~n~l~-~lP~-----~i~~L~~L~~L~~~~~ 555 (557)
.|..|.-. .-+. -+..|+||+.||--+.
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~V 127 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPV 127 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhccCccc
Confidence 99988532 3332 2567888888875443
No 471
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=95.25 E-value=0.1 Score=51.24 Aligned_cols=27 Identities=30% Similarity=0.525 Sum_probs=23.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
....+++|.|+.|.|||||.+.+....
T Consensus 26 ~~Gei~~l~G~NGaGKTTLl~~l~Gl~ 52 (301)
T TIGR03522 26 QKGRIVGFLGPNGAGKSTTMKIITGYL 52 (301)
T ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 356799999999999999999998764
No 472
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=95.25 E-value=0.015 Score=57.41 Aligned_cols=151 Identities=20% Similarity=0.278 Sum_probs=78.5
Q ss_pred cchhHHHHHHHHHHhc----------------cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCC---Ccc-eEEEEE--
Q 036236 93 VGLQSQLEQVWRCLVV----------------EESVGIIGLYGMGGVGKTTLLTHINNKFLENPI---NFD-CVIWVV-- 150 (557)
Q Consensus 93 vGr~~~~~~l~~~L~~----------------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~---~f~-~~~wv~-- 150 (557)
.|-..++..|.+.+.. -...-+++|+|.+|.||||+.+++......... ..+ +.+-+.
T Consensus 374 ~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~n 453 (593)
T COG2401 374 KGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKN 453 (593)
T ss_pred ccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceecccc
Confidence 4555667777766541 024568999999999999999998776521111 111 222221
Q ss_pred -----eC----CccCHHHHHHHHHH-------------HhCCCCCCC------CCCCHHHHHHHHHHHhcCCcEEEEEcc
Q 036236 151 -----VS----KDLRLEKIQEDIGK-------------KIGLFDDSW------KSKSVEEKAVDIFRSLREKRFVLLLDD 202 (557)
Q Consensus 151 -----~~----~~~~~~~~~~~i~~-------------~l~~~~~~~------~~~~~~~~~~~l~~~l~~k~~LlVlDd 202 (557)
+. ..++-..+++++.+ ..++.+... .-.+.+.-..+|.+.+..++-+++.|.
T Consensus 454 t~~a~iPge~Ep~f~~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDE 533 (593)
T COG2401 454 TVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDE 533 (593)
T ss_pred chhhccCcccccccCchhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhh
Confidence 11 11122233433333 333322110 112233345567788888989999999
Q ss_pred CCCccc-c--ccccccCCC--CCCCCcEEEEeeCChHHHhcccCCCc
Q 036236 203 IWERVD-L--TKVGVPLPG--PQNTTSKVVFTTRSIDVCGSMESHRK 244 (557)
Q Consensus 203 v~~~~~-~--~~l~~~l~~--~~~~~s~iliTtR~~~v~~~~~~~~~ 244 (557)
+....+ . ..+...+.. ...+ +.+++.|+++++...+..+..
T Consensus 534 F~AhLD~~TA~rVArkiselaRe~g-iTlivvThrpEv~~AL~PD~l 579 (593)
T COG2401 534 FAAHLDELTAVRVARKISELAREAG-ITLIVVTHRPEVGNALRPDTL 579 (593)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHhC-CeEEEEecCHHHHhccCCcee
Confidence 853211 1 111111111 1123 667777777788777655543
No 473
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.24 E-value=0.075 Score=47.20 Aligned_cols=83 Identities=12% Similarity=0.168 Sum_probs=44.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCCCCCCC-HHHHHHHHHHHh
Q 036236 113 GIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDSWKSKS-VEEKAVDIFRSL 191 (557)
Q Consensus 113 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~-~~~~~~~l~~~l 191 (557)
.++.|.|.+|+|||++|..+.... . . ..+++...... -.+..+.|..........+.... ...+...+....
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~-~--~---~~~~iat~~~~-~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~ 74 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQS-G--L---QVLYIATAQPF-DDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADA 74 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHc-C--C---CcEeCcCCCCC-hHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhc
Confidence 368999999999999999998775 1 1 13344333332 33455555444332222232111 112333333323
Q ss_pred cCCcEEEEEccC
Q 036236 192 REKRFVLLLDDI 203 (557)
Q Consensus 192 ~~k~~LlVlDdv 203 (557)
.+ .-++++|.+
T Consensus 75 ~~-~~~VlID~L 85 (170)
T PRK05800 75 AP-GRCVLVDCL 85 (170)
T ss_pred CC-CCEEEehhH
Confidence 32 337889987
No 474
>PRK13947 shikimate kinase; Provisional
Probab=95.23 E-value=0.016 Score=51.65 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 036236 114 IIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 114 vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
.|.|+|++|+||||+|+.+++.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999987
No 475
>PRK15453 phosphoribulokinase; Provisional
Probab=95.23 E-value=0.11 Score=49.47 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=23.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
.+..+|+|.|.+|+||||+|+.+.+.+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999999998766
No 476
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.21 E-value=0.018 Score=52.47 Aligned_cols=25 Identities=32% Similarity=0.313 Sum_probs=22.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 112 VGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 112 ~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..+|.|.|.+|+||||+|+.++...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999998885
No 477
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=95.20 E-value=0.099 Score=51.07 Aligned_cols=26 Identities=42% Similarity=0.599 Sum_probs=23.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...++++.|+.|.|||||.+.+....
T Consensus 30 ~Gei~gllG~NGAGKTTllk~l~gl~ 55 (293)
T COG1131 30 PGEIFGLLGPNGAGKTTLLKILAGLL 55 (293)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCc
Confidence 56799999999999999999998876
No 478
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=95.19 E-value=0.091 Score=57.44 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=23.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
+....|+|+|..|+|||||++.+..-.
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467799999999999999999986654
No 479
>CHL00206 ycf2 Ycf2; Provisional
Probab=95.19 E-value=0.12 Score=61.07 Aligned_cols=26 Identities=19% Similarity=0.201 Sum_probs=23.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..+-|.++|++|+|||.||++++.+.
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhc
Confidence 46778999999999999999999986
No 480
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.19 E-value=0.018 Score=53.20 Aligned_cols=26 Identities=31% Similarity=0.345 Sum_probs=23.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...+|+|+|++|+|||||++.++...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 56789999999999999999998875
No 481
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.18 E-value=0.00086 Score=60.59 Aligned_cols=83 Identities=17% Similarity=0.148 Sum_probs=71.9
Q ss_pred CCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCccccCCCCCCeeeccCCCCcccChHHHhHhhhhh
Q 036236 470 PTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVGMSKLGSLELLDISHTFIKELPEELKKLLEAIQ 549 (557)
Q Consensus 470 ~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~i~~L~~L~~L~l~~n~l~~lP~~i~~L~~L~~ 549 (557)
..+.....|+++.|+ +..+-.. |+.++.|..||++.| .+..+|..++.+..++.+++..|..+.+|.+.+.++.+++
T Consensus 39 ~~~kr~tvld~~s~r-~vn~~~n-~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNR-LVNLGKN-FSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKK 115 (326)
T ss_pred hccceeeeehhhhhH-HHhhccc-hHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcch
Confidence 567788899999998 6666666 788888999999998 8999999999999999999999999999999999999998
Q ss_pred cCCCCC
Q 036236 550 RAPRPD 555 (557)
Q Consensus 550 L~~~~~ 555 (557)
++..+.
T Consensus 116 ~e~k~~ 121 (326)
T KOG0473|consen 116 NEQKKT 121 (326)
T ss_pred hhhccC
Confidence 877654
No 482
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=95.18 E-value=0.063 Score=57.67 Aligned_cols=56 Identities=21% Similarity=0.305 Sum_probs=34.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHH
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGK 166 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 166 (557)
..++..|.|.+|.||||++..+..........-...+.+.....-....+.+.+..
T Consensus 166 ~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~ 221 (615)
T PRK10875 166 TRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGK 221 (615)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHh
Confidence 35789999999999999999987765221111123455544444444455555443
No 483
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=95.17 E-value=0.031 Score=54.74 Aligned_cols=49 Identities=29% Similarity=0.329 Sum_probs=34.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHH
Q 036236 112 VGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQED 163 (557)
Q Consensus 112 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 163 (557)
.+++.+.|.|||||||+|.+.+-..+. .+ ..++-|+.....++.+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~--~g-~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAE--SG-KKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHH--cC-CcEEEEEeCCCCchHhhhcc
Confidence 478999999999999999997766632 22 44666766665555555443
No 484
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.16 E-value=0.017 Score=47.80 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 036236 115 IGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 115 v~I~G~~GiGKTtLa~~v~~~~ 136 (557)
|.|+|..|+|||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998775
No 485
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.16 E-value=0.017 Score=49.32 Aligned_cols=23 Identities=48% Similarity=0.748 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 036236 114 IIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 114 vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
.|+|+|+.|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999998875
No 486
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=0.22 Score=49.06 Aligned_cols=45 Identities=22% Similarity=0.290 Sum_probs=32.5
Q ss_pred ccchhHHHHHHHHHHhc-----------cCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 92 IVGLQSQLEQVWRCLVV-----------EESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 92 ~vGr~~~~~~l~~~L~~-----------~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
+.|.++.++-|.++..- ...-+-|..+|++|.|||-||++|+...
T Consensus 214 Iagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc 269 (491)
T KOG0738|consen 214 IAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC 269 (491)
T ss_pred hcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhh
Confidence 45655555555554431 1244678999999999999999999987
No 487
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=95.15 E-value=0.066 Score=55.19 Aligned_cols=93 Identities=20% Similarity=0.307 Sum_probs=58.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCcc-CHHHHHHHHHHHhCCCCC------------CCC
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDL-RLEKIQEDIGKKIGLFDD------------SWK 176 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~------------~~~ 176 (557)
....-++|.|.+|+|||+|+.++..... ..+-+.++++-+++.. .+.++...+...-.+..+ ..+
T Consensus 159 gkGQR~gIfgg~GvGKs~L~~~~~~~~~--~~~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd 236 (494)
T CHL00060 159 RRGGKIGLFGGAGVGKTVLIMELINNIA--KAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMN 236 (494)
T ss_pred ccCCEEeeecCCCCChhHHHHHHHHHHH--HhcCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCC
Confidence 4677899999999999999999887741 1223678888887654 456677766652211111 001
Q ss_pred CCCHH-----HHHHHHHHHhc--CC-cEEEEEccCC
Q 036236 177 SKSVE-----EKAVDIFRSLR--EK-RFVLLLDDIW 204 (557)
Q Consensus 177 ~~~~~-----~~~~~l~~~l~--~k-~~LlVlDdv~ 204 (557)
..... ..+..+.++++ ++ .+||++||+-
T Consensus 237 ~p~~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslT 272 (494)
T CHL00060 237 EPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIF 272 (494)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCCEEEEcccch
Confidence 11111 22334566664 34 9999999983
No 488
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=95.15 E-value=0.61 Score=48.11 Aligned_cols=123 Identities=19% Similarity=0.208 Sum_probs=66.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeC---C---------------------ccCHHHHHHHHH
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVS---K---------------------DLRLEKIQEDIG 165 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~---~---------------------~~~~~~~~~~i~ 165 (557)
+.-..|+++|+.|+|||||.+.++.+.....+.-.......+. + .....+..+.|+
T Consensus 414 d~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~il 493 (614)
T KOG0927|consen 414 DLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSIL 493 (614)
T ss_pred CcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHH
Confidence 3456789999999999999999988863322221111111000 0 012345566677
Q ss_pred HHhCCCCCC----CCCCCHHHHHHHHHHH-hcCCcEEEEEccCCCccccc---cccccCCCCCCCCcEEEEeeCChHH
Q 036236 166 KKIGLFDDS----WKSKSVEEKAVDIFRS-LREKRFVLLLDDIWERVDLT---KVGVPLPGPQNTTSKVVFTTRSIDV 235 (557)
Q Consensus 166 ~~l~~~~~~----~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~---~l~~~l~~~~~~~s~iliTtR~~~v 235 (557)
...++..+. ....+..+....++.+ .-..+-+||||.--+..+.+ .+..++....+| ||++|.+-.+
T Consensus 494 grfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~Gg---vv~vSHDfrl 568 (614)
T KOG0927|consen 494 GRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFPGG---VVLVSHDFRL 568 (614)
T ss_pred HHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccCCc---eeeeechhhH
Confidence 777665432 1222333333333333 34678899999975544433 333444444333 7777776444
No 489
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.15 E-value=0.053 Score=55.60 Aligned_cols=49 Identities=20% Similarity=0.410 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHhc------cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEE
Q 036236 96 QSQLEQVWRCLVV------EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWV 149 (557)
Q Consensus 96 ~~~~~~l~~~L~~------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv 149 (557)
.+-+.++..||.. .-+.+++.|.|++|+||||.++.++..+ ....+=|.
T Consensus 88 kkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel-----g~~~~Ew~ 142 (634)
T KOG1970|consen 88 KKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL-----GYQLIEWS 142 (634)
T ss_pred HHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh-----Cceeeeec
Confidence 4556777778771 2356799999999999999999998876 34445555
No 490
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.14 E-value=0.021 Score=53.10 Aligned_cols=26 Identities=38% Similarity=0.594 Sum_probs=23.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
+..+|.++||+|.||||..+.++.+.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl 43 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHL 43 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHH
Confidence 56788999999999999999998887
No 491
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.13 E-value=0.017 Score=52.07 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 113 GIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 113 ~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
++++|+|+.|+|||||++.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999998865
No 492
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=95.13 E-value=0.033 Score=56.89 Aligned_cols=47 Identities=19% Similarity=0.179 Sum_probs=36.5
Q ss_pred CcccchhHHHHHHHHHHhc------c---------CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 90 PTIVGLQSQLEQVWRCLVV------E---------ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~------~---------~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..++|.+..++.+...+.. . -....+.++|++|+|||++|+.++...
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 4689999999888665520 0 023568999999999999999998776
No 493
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.13 E-value=0.12 Score=54.89 Aligned_cols=98 Identities=17% Similarity=0.140 Sum_probs=57.8
Q ss_pred HHHHHHHhcc-CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCC----
Q 036236 100 EQVWRCLVVE-ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDS---- 174 (557)
Q Consensus 100 ~~l~~~L~~~-~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---- 174 (557)
..|.+.|... +...++.|.|.+|+|||+++.+++... ...-..++|++.... ..++.+.+ ..++.+...
T Consensus 260 ~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~---~~~g~~~~yis~e~~--~~~i~~~~-~~~g~~~~~~~~~ 333 (509)
T PRK09302 260 PDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAA---CRRGERCLLFAFEES--RAQLIRNA-RSWGIDLEKMEEK 333 (509)
T ss_pred HHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHH---HhCCCcEEEEEecCC--HHHHHHHH-HHcCCChHHHhhc
Confidence 3444444311 356789999999999999999998775 223467888877654 44444433 444432111
Q ss_pred ---------CCCCCHHHHHHHHHHHhcC-CcEEEEEccC
Q 036236 175 ---------WKSKSVEEKAVDIFRSLRE-KRFVLLLDDI 203 (557)
Q Consensus 175 ---------~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv 203 (557)
......++....+.+.+.. +.-++|+|.+
T Consensus 334 g~l~i~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDsl 372 (509)
T PRK09302 334 GLLKIICARPESYGLEDHLIIIKREIEEFKPSRVAIDPL 372 (509)
T ss_pred CCceeecCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCH
Confidence 0112334445555555433 4457888886
No 494
>PRK13949 shikimate kinase; Provisional
Probab=95.12 E-value=0.019 Score=51.12 Aligned_cols=23 Identities=39% Similarity=0.416 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 036236 114 IIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 114 vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
-|.|+|++|+||||+++.+++..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999987
No 495
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=95.11 E-value=0.075 Score=54.74 Aligned_cols=94 Identities=13% Similarity=0.107 Sum_probs=56.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCc--ceEEEEEeCCcc-CHHHHHHHHHHHhCCCCC-----CCCCCCHH
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINF--DCVIWVVVSKDL-RLEKIQEDIGKKIGLFDD-----SWKSKSVE 181 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f--~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~-----~~~~~~~~ 181 (557)
....-++|.|..|+|||+|+.++.+.. .....+ ..++++.+++.. .+.++.+.+...=.+... ..+.....
T Consensus 139 g~GQR~gIfgg~G~GKs~L~~~ia~~~-~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~ 217 (458)
T TIGR01041 139 VRGQKLPIFSGSGLPHNELAAQIARQA-TVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVE 217 (458)
T ss_pred ccCCEEEeeCCCCCCHHHHHHHHHHhh-cccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHH
Confidence 466789999999999999999998875 221111 156666666543 456666666543222110 00111111
Q ss_pred -----HHHHHHHHHhc---CCcEEEEEccCC
Q 036236 182 -----EKAVDIFRSLR---EKRFVLLLDDIW 204 (557)
Q Consensus 182 -----~~~~~l~~~l~---~k~~LlVlDdv~ 204 (557)
..+..+.++++ ++++||++||+-
T Consensus 218 R~~a~~~a~tiAEyfr~d~G~~VLli~DslT 248 (458)
T TIGR01041 218 RIVTPRMALTAAEYLAFEKDMHVLVILTDMT 248 (458)
T ss_pred HHHHHHHHHHHHHHHHHccCCcEEEEEcChh
Confidence 12333555554 689999999983
No 496
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=95.10 E-value=0.084 Score=54.25 Aligned_cols=91 Identities=19% Similarity=0.187 Sum_probs=49.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCC-----CCCCCCCHH---
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFD-----DSWKSKSVE--- 181 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~--- 181 (557)
.....++|+|..|+|||||++.+.... . .-.+++++.-.+..+..++....+..-+... ...+.....
T Consensus 156 ~~Gq~i~I~G~sG~GKStLl~~I~~~~-~---~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~ 231 (438)
T PRK07721 156 GKGQRVGIFAGSGVGKSTLMGMIARNT-S---ADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIK 231 (438)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccc-C---CCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHH
Confidence 567899999999999999999888765 1 1224444433333344444333221111100 000111111
Q ss_pred --HHHHHHHHHh--cCCcEEEEEccCC
Q 036236 182 --EKAVDIFRSL--REKRFVLLLDDIW 204 (557)
Q Consensus 182 --~~~~~l~~~l--~~k~~LlVlDdv~ 204 (557)
..+..+.+++ +++.+||++||+-
T Consensus 232 ~~~~a~~iAEyfr~~g~~Vll~~Dslt 258 (438)
T PRK07721 232 GAYTATAIAEYFRDQGLNVMLMMDSVT 258 (438)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeChH
Confidence 1222344444 5799999999983
No 497
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=95.10 E-value=0.0095 Score=57.35 Aligned_cols=106 Identities=16% Similarity=0.188 Sum_probs=69.6
Q ss_pred cccccceEEEccccccccccCC------CCCCCccEEEccccccccc----ccchHhhcCCCCcEEEeecCCCCc-----
Q 036236 448 KGWENVRRLSLMQNQIETLSEV------PTCPHLLTLFLDFNQELEM----IADGFFQFMPSLKVLKISNCGNIF----- 512 (557)
Q Consensus 448 ~~~~~l~~l~l~~~~~~~~~~~------~~~~~L~~L~l~~~~~~~~----~p~~~~~~l~~L~~L~Ls~~~~~~----- 512 (557)
.+.+++|.+....|.+..-+.. ..++.|..+.++.|. +.. +-...+..+++|++|||.+| -++
T Consensus 154 ~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~-I~~eG~~al~eal~~~~~LevLdl~DN-tft~egs~ 231 (382)
T KOG1909|consen 154 ASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNG-IRPEGVTALAEALEHCPHLEVLDLRDN-TFTLEGSV 231 (382)
T ss_pred CCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEeccc-ccCchhHHHHHHHHhCCcceeeecccc-hhhhHHHH
Confidence 3456788888888887654322 445788888888886 321 11123678899999999998 454
Q ss_pred cCCccccCCCCCCeeeccCCCCcc-----cChHHH-hHhhhhhcCCCCC
Q 036236 513 QLPVGMSKLGSLELLDISHTFIKE-----LPEELK-KLLEAIQRAPRPD 555 (557)
Q Consensus 513 ~lP~~i~~L~~L~~L~l~~n~l~~-----lP~~i~-~L~~L~~L~~~~~ 555 (557)
.+-..++.+++|+.|++++|.++. +-..+. ..++|+.|.+.++
T Consensus 232 ~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gN 280 (382)
T KOG1909|consen 232 ALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGN 280 (382)
T ss_pred HHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcc
Confidence 244566777889999999988763 222222 2456776665544
No 498
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.10 E-value=0.029 Score=51.59 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=23.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
....+++|+|.+|+|||||++.+..-.
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 466799999999999999999987654
No 499
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.08 E-value=0.038 Score=50.48 Aligned_cols=50 Identities=30% Similarity=0.458 Sum_probs=32.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCC
Q 036236 114 IIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFD 172 (557)
Q Consensus 114 vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 172 (557)
.|+|+|-||+||||+|..+...+.. ++.+ .+.-|+...++++ ..+||...
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~-~~~~-~VLvVDaDpd~nL-------~~~LGve~ 51 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLS-KGGY-NVLVVDADPDSNL-------PEALGVEE 51 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHh-cCCc-eEEEEeCCCCCCh-------HHhcCCCC
Confidence 6899999999999999996666622 2223 3455555555443 34566544
No 500
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=95.08 E-value=0.051 Score=52.69 Aligned_cols=54 Identities=22% Similarity=0.266 Sum_probs=40.7
Q ss_pred CCcccchhHHHHH---HHHHHhcc-CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCc
Q 036236 89 EPTIVGLQSQLEQ---VWRCLVVE-ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINF 143 (557)
Q Consensus 89 ~~~~vGr~~~~~~---l~~~L~~~-~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f 143 (557)
...|||..+..+. +.+++.+. -..+.|.|+|++|.|||+||-.+.+.+ ...-.|
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eL-G~dvPF 95 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIAREL-GEDVPF 95 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHh-CCCCCc
Confidence 4678998876654 56666632 256899999999999999999999998 333344
Done!