Query 036236
Match_columns 557
No_of_seqs 585 out of 3325
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 18:29:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036236.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036236hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 2.3E-48 7.9E-53 413.5 22.5 312 93-427 131-472 (549)
2 1vt4_I APAF-1 related killer D 100.0 2.3E-40 7.9E-45 356.6 19.6 286 91-419 129-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 3.1E-39 1.1E-43 378.1 30.0 314 87-426 121-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 8.9E-37 3.1E-41 329.0 26.0 308 87-423 121-449 (591)
5 2qen_A Walker-type ATPase; unk 99.8 2E-17 6.9E-22 165.7 21.1 292 89-420 11-349 (350)
6 2fna_A Conserved hypothetical 99.7 1.3E-16 4.4E-21 160.3 22.5 290 89-419 12-356 (357)
7 1w5s_A Origin recognition comp 99.7 9.3E-17 3.2E-21 164.8 16.5 306 90-415 22-387 (412)
8 2v1u_A Cell division control p 99.5 2.7E-13 9.1E-18 137.6 20.4 291 90-404 19-351 (387)
9 2qby_B CDC6 homolog 3, cell di 99.5 3.8E-13 1.3E-17 136.4 20.7 289 90-404 20-339 (384)
10 2qby_A CDC6 homolog 1, cell di 99.5 3.1E-13 1.1E-17 137.0 15.0 293 90-403 20-347 (386)
11 1fnn_A CDC6P, cell division co 99.5 6.4E-12 2.2E-16 127.5 24.4 292 90-404 17-351 (389)
12 1a9n_A U2A', U2A'; complex (nu 99.4 2.4E-13 8.3E-18 121.7 9.4 121 434-556 24-151 (176)
13 1njg_A DNA polymerase III subu 99.4 3.6E-12 1.2E-16 120.3 14.8 198 90-299 23-231 (250)
14 3e6j_A Variable lymphocyte rec 99.4 1.6E-12 5.5E-17 121.6 10.1 108 447-556 60-170 (229)
15 2ell_A Acidic leucine-rich nuc 99.3 2.1E-12 7.2E-17 114.5 9.5 119 436-556 31-158 (168)
16 3e6j_A Variable lymphocyte rec 99.3 2.8E-12 9.7E-17 119.9 10.5 117 437-556 27-146 (229)
17 2v70_A SLIT-2, SLIT homolog 2 99.3 2.5E-12 8.6E-17 119.5 9.9 108 447-556 53-164 (220)
18 2je0_A Acidic leucine-rich nuc 99.3 3.4E-12 1.2E-16 110.7 9.5 117 435-554 23-149 (149)
19 2chg_A Replication factor C sm 99.3 1.2E-11 4.2E-16 114.8 13.6 184 90-296 17-204 (226)
20 2v9t_B SLIT homolog 2 protein 99.3 4.1E-12 1.4E-16 118.0 9.8 109 446-556 51-163 (220)
21 2wfh_A SLIT homolog 2 protein 99.3 4.7E-12 1.6E-16 114.9 9.6 120 434-556 15-137 (193)
22 2o6s_A Variable lymphocyte rec 99.3 8.3E-12 2.8E-16 114.9 10.3 117 438-556 37-159 (208)
23 4fcg_A Uncharacterized protein 99.3 3.6E-12 1.2E-16 126.1 8.3 117 438-555 113-239 (328)
24 2o6r_A Variable lymphocyte rec 99.3 9.5E-12 3.2E-16 111.3 10.0 117 437-556 15-135 (177)
25 1w8a_A SLIT protein; signaling 99.3 6E-12 2.1E-16 114.2 8.6 120 434-556 13-137 (192)
26 1a9n_A U2A', U2A'; complex (nu 99.3 2.3E-12 7.8E-17 115.3 5.4 108 445-556 13-124 (176)
27 3m19_A Variable lymphocyte rec 99.3 1.2E-11 4.1E-16 117.4 10.4 108 447-556 79-190 (251)
28 3rfs_A Internalin B, repeat mo 99.3 9.8E-12 3.4E-16 119.5 9.8 119 436-556 70-192 (272)
29 4b8c_D Glucose-repressible alc 99.3 2.3E-12 7.7E-17 141.0 5.9 107 447-556 220-327 (727)
30 3m19_A Variable lymphocyte rec 99.3 1.3E-11 4.3E-16 117.2 10.4 109 446-556 54-166 (251)
31 2r9u_A Variable lymphocyte rec 99.3 7.6E-12 2.6E-16 111.5 8.2 112 433-547 16-130 (174)
32 2v9t_B SLIT homolog 2 protein 99.3 1.3E-11 4.3E-16 114.7 9.8 120 434-556 16-139 (220)
33 4ezg_A Putative uncharacterize 99.3 1.3E-11 4.3E-16 112.6 9.5 115 438-556 75-192 (197)
34 4fcg_A Uncharacterized protein 99.3 5.1E-12 1.7E-16 125.0 7.4 121 434-556 86-217 (328)
35 4ezg_A Putative uncharacterize 99.2 1.1E-11 3.7E-16 113.0 8.3 119 434-556 49-170 (197)
36 3g39_A Variable lymphocyte rec 99.2 1.2E-11 4.2E-16 109.8 8.0 107 435-544 15-124 (170)
37 2v70_A SLIT-2, SLIT homolog 2 99.2 1.5E-11 5.2E-16 114.1 8.9 119 435-556 17-140 (220)
38 1dce_A Protein (RAB geranylger 99.2 8.8E-12 3E-16 132.2 8.0 114 434-551 446-566 (567)
39 2o6s_A Variable lymphocyte rec 99.2 2.7E-11 9.4E-16 111.4 10.0 117 437-556 15-135 (208)
40 3rfs_A Internalin B, repeat mo 99.2 2.7E-11 9.1E-16 116.5 10.2 121 434-556 90-216 (272)
41 2je0_A Acidic leucine-rich nuc 99.2 8.8E-12 3E-16 108.1 6.0 103 450-556 16-124 (149)
42 1p9a_G Platelet glycoprotein I 99.2 2.4E-11 8.1E-16 118.0 9.5 117 438-556 86-206 (290)
43 1p9a_G Platelet glycoprotein I 99.2 3.6E-11 1.2E-15 116.7 10.2 118 437-556 63-183 (290)
44 2r9u_A Variable lymphocyte rec 99.2 8.7E-11 3E-15 104.6 11.4 101 453-556 14-116 (174)
45 2o6q_A Variable lymphocyte rec 99.2 5.9E-11 2E-15 113.9 10.4 108 447-556 105-216 (270)
46 2o6q_A Variable lymphocyte rec 99.2 6.2E-11 2.1E-15 113.8 10.4 106 448-555 82-191 (270)
47 2ell_A Acidic leucine-rich nuc 99.2 1.4E-11 4.7E-16 109.2 5.2 103 450-556 23-131 (168)
48 2xot_A Amphoterin-induced prot 99.2 4.7E-11 1.6E-15 119.8 9.6 105 449-555 62-173 (361)
49 1xeu_A Internalin C; cellular 99.2 6.2E-11 2.1E-15 113.2 9.9 114 436-556 48-161 (263)
50 2z62_A TOLL-like receptor 4, v 99.2 6.7E-11 2.3E-15 113.9 10.1 107 447-555 48-159 (276)
51 4g8a_A TOLL-like receptor 4; l 99.2 2.8E-11 9.5E-16 130.9 8.2 107 447-555 72-183 (635)
52 1h6t_A Internalin B; cell adhe 99.2 7.5E-11 2.6E-15 114.5 10.2 109 440-554 101-209 (291)
53 1h6u_A Internalin H; cell adhe 99.2 8.3E-11 2.9E-15 115.2 10.5 114 437-556 71-184 (308)
54 4g8a_A TOLL-like receptor 4; l 99.1 8.1E-11 2.8E-15 127.3 10.5 117 437-556 39-159 (635)
55 1h6u_A Internalin H; cell adhe 99.1 1.1E-10 3.9E-15 114.2 10.6 110 440-555 96-205 (308)
56 1dce_A Protein (RAB geranylger 99.1 5.1E-11 1.7E-15 126.3 8.6 101 452-556 442-544 (567)
57 1ozn_A Reticulon 4 receptor; N 99.1 1.4E-10 4.9E-15 112.1 10.4 108 447-556 125-236 (285)
58 1h6t_A Internalin B; cell adhe 99.1 1.5E-10 5E-15 112.4 10.4 116 435-556 74-189 (291)
59 1sxj_B Activator 1 37 kDa subu 99.1 2.2E-10 7.5E-15 113.0 11.1 183 90-296 21-210 (323)
60 2xot_A Amphoterin-induced prot 99.1 1.3E-10 4.4E-15 116.6 8.9 120 434-556 23-147 (361)
61 3g39_A Variable lymphocyte rec 99.1 4.2E-10 1.4E-14 99.8 11.1 102 452-556 10-113 (170)
62 1hqc_A RUVB; extended AAA-ATPa 99.1 3.1E-09 1.1E-13 104.7 18.7 272 90-403 12-324 (324)
63 1xeu_A Internalin C; cellular 99.1 1.1E-10 3.8E-15 111.5 7.6 109 441-556 31-139 (263)
64 1m9s_A Internalin B; cell inva 99.1 2.3E-10 8E-15 122.0 10.7 115 435-555 93-207 (605)
65 2z80_A TOLL-like receptor 2, v 99.1 9.9E-11 3.4E-15 117.1 6.8 101 452-554 53-158 (353)
66 2z63_A TOLL-like receptor 4, v 99.1 2.3E-10 7.9E-15 122.1 10.1 109 446-556 47-160 (570)
67 1ozn_A Reticulon 4 receptor; N 99.1 1.9E-10 6.3E-15 111.4 8.2 109 446-556 100-212 (285)
68 2xwt_C Thyrotropin receptor; s 99.1 1.4E-10 4.7E-15 109.2 7.0 106 447-555 51-166 (239)
69 3o6n_A APL1; leucine-rich repe 99.1 1.9E-10 6.4E-15 116.7 8.3 107 447-555 65-175 (390)
70 1m9s_A Internalin B; cell inva 99.1 2.1E-10 7.3E-15 122.3 9.1 115 436-556 72-186 (605)
71 2wfh_A SLIT homolog 2 protein 99.1 2.7E-10 9.3E-15 103.2 8.5 99 454-556 13-113 (193)
72 3vq2_A TLR4, TOLL-like recepto 99.1 2.8E-10 9.6E-15 122.5 10.0 108 447-556 52-164 (606)
73 1w8a_A SLIT protein; signaling 99.1 2E-10 6.7E-15 104.1 7.2 101 453-556 10-113 (192)
74 3oja_B Anopheles plasmodium-re 99.0 2.3E-10 7.9E-15 122.8 8.6 106 448-555 72-181 (597)
75 3vq2_A TLR4, TOLL-like recepto 99.0 2.8E-10 9.6E-15 122.5 9.0 120 434-556 16-139 (606)
76 2z7x_B TOLL-like receptor 1, v 99.0 2.2E-10 7.5E-15 120.9 7.7 118 434-556 5-126 (520)
77 3zyj_A Leucine-rich repeat-con 99.0 4.6E-10 1.6E-14 115.8 9.5 107 447-555 132-241 (440)
78 1ogq_A PGIP-2, polygalacturona 99.0 2.2E-10 7.6E-15 112.4 6.7 110 445-556 70-185 (313)
79 3o6n_A APL1; leucine-rich repe 99.0 3.7E-10 1.2E-14 114.6 8.3 105 450-556 225-329 (390)
80 3a79_B TLR6, VLRB.59, TOLL-lik 99.0 3.8E-10 1.3E-14 120.3 8.7 119 433-556 35-157 (562)
81 1ogq_A PGIP-2, polygalacturona 99.0 1.9E-10 6.4E-15 113.0 5.7 108 446-556 96-208 (313)
82 1ds9_A Outer arm dynein; leuci 99.0 5.9E-12 2E-16 114.9 -4.8 113 440-556 59-185 (198)
83 3o53_A Protein LRIM1, AGAP0063 99.0 3.1E-10 1E-14 111.7 6.8 102 450-555 143-247 (317)
84 3zyi_A Leucine-rich repeat-con 99.0 6.8E-10 2.3E-14 115.0 9.8 107 447-555 143-252 (452)
85 3zyj_A Leucine-rich repeat-con 99.0 3.6E-10 1.2E-14 116.6 7.6 109 446-556 180-290 (440)
86 3cvr_A Invasion plasmid antige 99.0 6.2E-10 2.1E-14 117.5 9.2 110 434-556 125-241 (571)
87 2z80_A TOLL-like receptor 2, v 99.0 3.3E-10 1.1E-14 113.3 6.7 107 447-555 72-184 (353)
88 1xku_A Decorin; proteoglycan, 99.0 5.2E-10 1.8E-14 110.7 8.0 88 451-540 192-281 (330)
89 2z62_A TOLL-like receptor 4, v 99.0 1.2E-09 4.2E-14 105.0 10.3 108 446-555 71-187 (276)
90 2z66_A Variable lymphocyte rec 99.0 4E-10 1.4E-14 110.2 6.9 107 447-556 122-234 (306)
91 2o6r_A Variable lymphocyte rec 99.0 2.3E-09 7.9E-14 95.6 11.3 106 437-544 36-146 (177)
92 1iqp_A RFCS; clamp loader, ext 99.0 9.7E-10 3.3E-14 108.5 9.6 182 90-298 25-214 (327)
93 3zyi_A Leucine-rich repeat-con 99.0 5.7E-10 2E-14 115.5 8.2 108 447-556 192-301 (452)
94 2z63_A TOLL-like receptor 4, v 99.0 6.4E-10 2.2E-14 118.7 8.8 120 434-556 12-135 (570)
95 3v47_A TOLL-like receptor 5B a 99.0 6.3E-10 2.2E-14 115.3 8.5 108 447-556 295-406 (455)
96 3j0a_A TOLL-like receptor 5; m 99.0 4.6E-10 1.6E-14 125.5 7.9 118 434-554 9-132 (844)
97 3oja_B Anopheles plasmodium-re 99.0 5.6E-10 1.9E-14 119.8 8.0 104 451-556 232-335 (597)
98 3v47_A TOLL-like receptor 5B a 99.0 6.3E-10 2.2E-14 115.3 7.9 84 451-535 30-116 (455)
99 2ifg_A High affinity nerve gro 99.0 4.7E-10 1.6E-14 111.8 6.7 97 440-538 20-119 (347)
100 1ziw_A TOLL-like receptor 3; i 99.0 8.7E-10 3E-14 120.4 9.2 116 437-555 12-131 (680)
101 4b8c_D Glucose-repressible alc 99.0 3.2E-10 1.1E-14 124.0 5.6 96 458-556 208-304 (727)
102 4fmz_A Internalin; leucine ric 99.0 1.6E-09 5.4E-14 108.0 10.2 104 447-555 84-187 (347)
103 4fmz_A Internalin; leucine ric 99.0 1.3E-09 4.3E-14 108.7 9.4 115 437-556 229-344 (347)
104 2z81_A CD282 antigen, TOLL-lik 99.0 5E-10 1.7E-14 119.0 6.7 101 451-553 26-131 (549)
105 3te6_A Regulatory protein SIR3 99.0 9.8E-09 3.3E-13 99.3 15.0 171 91-264 21-212 (318)
106 3oja_A Leucine-rich immune mol 99.0 4E-10 1.4E-14 117.6 5.6 104 448-555 141-247 (487)
107 2z66_A Variable lymphocyte rec 99.0 7.2E-10 2.5E-14 108.4 7.1 114 438-555 16-136 (306)
108 4eco_A Uncharacterized protein 98.9 3.4E-10 1.1E-14 122.4 4.8 108 447-555 202-340 (636)
109 2ft3_A Biglycan; proteoglycan, 98.9 1.6E-09 5.5E-14 107.2 9.4 114 438-556 42-158 (332)
110 4ecn_A Leucine-rich repeat pro 98.9 3.7E-10 1.2E-14 125.0 4.7 109 447-556 444-584 (876)
111 1jr3_A DNA polymerase III subu 98.9 7.2E-09 2.5E-13 104.3 13.8 195 90-296 16-221 (373)
112 2id5_A Lingo-1, leucine rich r 98.9 1.5E-09 5E-14 113.2 9.0 115 438-555 20-138 (477)
113 2xwt_C Thyrotropin receptor; s 98.9 7E-10 2.4E-14 104.3 5.9 107 448-555 102-215 (239)
114 1ds9_A Outer arm dynein; leuci 98.9 1.7E-11 5.7E-16 111.9 -5.3 106 446-555 43-150 (198)
115 3o53_A Protein LRIM1, AGAP0063 98.9 7.8E-10 2.7E-14 108.7 6.1 102 449-553 167-270 (317)
116 3bz5_A Internalin-J, INLJ; leu 98.9 2.4E-09 8.3E-14 110.7 9.8 109 437-555 50-158 (457)
117 4eco_A Uncharacterized protein 98.9 1.2E-09 4.1E-14 118.0 7.8 89 466-556 198-316 (636)
118 1wwl_A Monocyte differentiatio 98.9 4.6E-10 1.6E-14 110.1 4.1 104 448-556 198-307 (312)
119 3bz5_A Internalin-J, INLJ; leu 98.9 1E-09 3.5E-14 113.5 6.8 102 446-556 37-138 (457)
120 1wwl_A Monocyte differentiatio 98.9 2E-09 6.8E-14 105.6 7.6 119 434-556 154-285 (312)
121 1xku_A Decorin; proteoglycan, 98.9 5.5E-09 1.9E-13 103.3 10.8 100 451-554 52-154 (330)
122 3oja_A Leucine-rich immune mol 98.9 1.8E-09 6.3E-14 112.6 7.6 106 449-556 118-225 (487)
123 3t6q_A CD180 antigen; protein- 98.9 2.4E-09 8.1E-14 115.3 8.4 102 452-555 34-139 (606)
124 4glp_A Monocyte differentiatio 98.9 1.4E-09 4.7E-14 106.6 6.0 105 447-555 165-282 (310)
125 2ft3_A Biglycan; proteoglycan, 98.9 1.1E-09 3.7E-14 108.5 4.9 103 451-555 193-304 (332)
126 2z7x_B TOLL-like receptor 1, v 98.9 1.7E-09 6E-14 114.0 6.8 98 454-556 3-101 (520)
127 1ziw_A TOLL-like receptor 3; i 98.9 2.6E-09 8.7E-14 116.7 8.0 106 448-555 70-181 (680)
128 2chq_A Replication factor C sm 98.9 1.2E-08 4.1E-13 100.2 11.8 180 90-296 17-204 (319)
129 4glp_A Monocyte differentiatio 98.8 6.7E-10 2.3E-14 108.8 2.5 103 448-556 194-305 (310)
130 1o6v_A Internalin A; bacterial 98.8 6.9E-09 2.4E-13 107.8 10.2 111 440-556 254-364 (466)
131 2z81_A CD282 antigen, TOLL-lik 98.8 1.8E-09 6.2E-14 114.7 5.8 108 446-555 45-158 (549)
132 3a79_B TLR6, VLRB.59, TOLL-lik 98.8 6.2E-09 2.1E-13 110.9 9.8 105 447-556 399-508 (562)
133 4ecn_A Leucine-rich repeat pro 98.8 4.8E-09 1.6E-13 116.1 8.3 100 452-555 729-837 (876)
134 2id5_A Lingo-1, leucine rich r 98.8 4.4E-09 1.5E-13 109.6 7.6 107 447-555 76-186 (477)
135 1o6v_A Internalin A; bacterial 98.8 9.2E-09 3.1E-13 106.9 9.9 114 437-556 229-342 (466)
136 3cvr_A Invasion plasmid antige 98.8 9.7E-09 3.3E-13 108.4 9.6 107 434-556 105-218 (571)
137 2ifg_A High affinity nerve gro 98.8 1.3E-08 4.5E-13 101.2 10.0 100 455-556 12-114 (347)
138 3rgz_A Protein brassinosteroid 98.8 6.3E-09 2.2E-13 115.0 8.2 107 447-555 438-548 (768)
139 3t6q_A CD180 antigen; protein- 98.8 5.4E-09 1.9E-13 112.4 7.5 106 448-555 78-189 (606)
140 3g06_A SSPH2 (leucine-rich rep 98.8 1.4E-08 4.9E-13 108.4 10.5 95 451-556 201-295 (622)
141 1jbk_A CLPB protein; beta barr 98.8 9.1E-09 3.1E-13 92.8 7.2 46 90-136 22-67 (195)
142 3rgz_A Protein brassinosteroid 98.7 1.4E-08 4.6E-13 112.4 9.1 109 446-556 413-525 (768)
143 3g06_A SSPH2 (leucine-rich rep 98.7 3.2E-08 1.1E-12 105.8 11.0 80 450-540 80-159 (622)
144 1jl5_A Outer protein YOPM; leu 98.7 2.5E-08 8.6E-13 102.9 9.6 107 438-554 140-246 (454)
145 3j0a_A TOLL-like receptor 5; m 98.7 9.2E-09 3.2E-13 114.9 6.4 107 447-555 44-158 (844)
146 3bos_A Putative DNA replicatio 98.7 1.4E-08 4.7E-13 95.3 6.1 173 90-296 28-217 (242)
147 1jl5_A Outer protein YOPM; leu 98.7 3.6E-08 1.2E-12 101.7 8.9 81 452-539 132-212 (454)
148 3h4m_A Proteasome-activating n 98.7 4.1E-07 1.4E-11 87.6 15.3 178 90-295 17-230 (285)
149 2ca6_A RAN GTPase-activating p 98.6 8.1E-09 2.8E-13 104.4 3.0 105 449-556 185-314 (386)
150 2z4s_A Chromosomal replication 98.6 6.3E-08 2.2E-12 99.1 9.4 184 90-295 105-305 (440)
151 1sxj_D Activator 1 41 kDa subu 98.6 9.4E-08 3.2E-12 95.3 9.8 193 90-295 37-234 (353)
152 3pvs_A Replication-associated 98.6 8.9E-07 3E-11 90.5 16.2 175 90-296 26-215 (447)
153 1sxj_A Activator 1 95 kDa subu 98.6 3.6E-07 1.2E-11 95.7 13.4 189 90-295 39-252 (516)
154 2ast_B S-phase kinase-associat 98.6 1.8E-08 6E-13 99.8 2.7 105 450-555 117-232 (336)
155 1d2n_A N-ethylmaleimide-sensit 98.5 2.1E-06 7.1E-11 82.1 15.8 169 90-288 33-229 (272)
156 1a5t_A Delta prime, HOLB; zinc 98.5 3.1E-06 1.1E-10 83.3 16.6 170 95-295 7-204 (334)
157 2qz4_A Paraplegin; AAA+, SPG7, 98.5 3.5E-06 1.2E-10 79.9 16.3 182 90-296 6-222 (262)
158 1sxj_E Activator 1 40 kDa subu 98.5 1.8E-07 6.1E-12 93.3 7.5 195 90-296 14-237 (354)
159 4ay9_X Follicle-stimulating ho 98.5 8.8E-08 3E-12 95.4 5.1 115 436-552 16-135 (350)
160 3uk6_A RUVB-like 2; hexameric 98.5 4.2E-07 1.4E-11 91.1 10.0 47 90-136 44-94 (368)
161 3u61_B DNA polymerase accessor 98.5 9.9E-07 3.4E-11 86.7 12.4 174 90-294 26-214 (324)
162 2ast_B S-phase kinase-associat 98.5 7.5E-08 2.6E-12 95.2 4.3 110 445-555 87-205 (336)
163 3syl_A Protein CBBX; photosynt 98.4 7E-07 2.4E-11 87.1 10.7 153 91-265 32-219 (309)
164 3pfi_A Holliday junction ATP-d 98.4 1E-06 3.6E-11 87.1 11.2 170 90-296 29-227 (338)
165 1xwi_A SKD1 protein; VPS4B, AA 98.4 1.6E-05 5.3E-10 77.8 19.1 180 90-297 12-224 (322)
166 1l8q_A Chromosomal replication 98.4 1.8E-06 6.2E-11 84.8 12.3 176 90-292 11-204 (324)
167 3eie_A Vacuolar protein sortin 98.4 4.8E-06 1.6E-10 81.6 14.8 178 90-296 18-228 (322)
168 4ay9_X Follicle-stimulating ho 98.4 1.7E-07 5.8E-12 93.3 4.5 80 474-555 155-236 (350)
169 2ca6_A RAN GTPase-activating p 98.4 9.1E-08 3.1E-12 96.7 2.4 104 451-556 159-285 (386)
170 3d8b_A Fidgetin-like protein 1 98.4 6.8E-06 2.3E-10 81.7 15.9 179 90-297 84-296 (357)
171 1sxj_C Activator 1 40 kDa subu 98.3 2.8E-06 9.7E-11 84.0 12.5 173 90-292 25-208 (340)
172 3b9p_A CG5977-PA, isoform A; A 98.3 2.1E-05 7.2E-10 76.0 18.1 178 90-296 21-233 (297)
173 2qp9_X Vacuolar protein sortin 98.3 7E-06 2.4E-10 81.5 14.3 178 90-296 51-261 (355)
174 3rw6_A Nuclear RNA export fact 98.3 3.2E-07 1.1E-11 86.5 4.1 84 470-556 167-262 (267)
175 3vfd_A Spastin; ATPase, microt 98.3 2.2E-05 7.5E-10 79.1 17.5 178 90-296 115-326 (389)
176 2zan_A Vacuolar protein sortin 98.3 2.4E-05 8.2E-10 80.1 17.9 180 90-296 134-345 (444)
177 3qfl_A MLA10; coiled-coil, (CC 98.3 1.7E-06 5.9E-11 70.2 7.4 32 3-34 53-84 (115)
178 2p65_A Hypothetical protein PF 98.3 1E-06 3.5E-11 78.6 6.4 46 90-136 22-67 (187)
179 3goz_A Leucine-rich repeat-con 98.2 1.1E-06 3.6E-11 87.9 6.6 106 449-556 48-178 (362)
180 3cf0_A Transitional endoplasmi 98.2 1.8E-05 6.2E-10 76.6 14.6 175 90-291 15-223 (301)
181 3pxg_A Negative regulator of g 98.2 1.4E-05 4.6E-10 82.5 13.8 150 90-265 180-340 (468)
182 3goz_A Leucine-rich repeat-con 98.2 1.3E-06 4.4E-11 87.4 5.3 103 451-556 109-236 (362)
183 4b4t_J 26S protease regulatory 98.1 4.9E-05 1.7E-09 75.4 15.7 172 90-289 148-354 (405)
184 3n70_A Transport activator; si 98.1 3.2E-06 1.1E-10 72.3 6.1 46 91-136 2-48 (145)
185 3sb4_A Hypothetical leucine ri 98.1 2.4E-06 8.2E-11 84.1 5.1 98 450-551 225-327 (329)
186 1qvr_A CLPB protein; coiled co 98.1 1.2E-05 4.2E-10 89.4 11.0 154 90-263 170-345 (854)
187 1z7x_W Ribonuclease inhibitor; 98.1 8.1E-07 2.8E-11 91.8 1.4 107 447-556 52-181 (461)
188 1lv7_A FTSH; alpha/beta domain 98.1 8.9E-05 3.1E-09 69.9 15.4 178 90-294 12-223 (257)
189 2gno_A DNA polymerase III, gam 98.0 1.7E-05 6E-10 76.6 10.2 147 94-263 1-152 (305)
190 2r62_A Cell division protease 98.0 1.3E-05 4.4E-10 76.3 9.2 153 90-265 11-198 (268)
191 4b4t_L 26S protease subunit RP 98.0 0.00015 5.1E-09 73.0 17.0 172 90-289 181-387 (437)
192 3pxi_A Negative regulator of g 98.0 7.7E-05 2.6E-09 82.0 16.3 150 90-265 180-340 (758)
193 1ofh_A ATP-dependent HSL prote 98.0 3.8E-05 1.3E-09 74.6 12.4 47 90-136 15-74 (310)
194 3un9_A NLR family member X1; l 98.0 1.7E-06 6E-11 86.5 2.7 101 452-555 127-249 (372)
195 1z7x_W Ribonuclease inhibitor; 98.0 1.5E-06 5.2E-11 89.8 2.3 104 451-556 199-324 (461)
196 4b4t_H 26S protease regulatory 98.0 0.00012 4E-09 73.7 15.7 170 91-288 210-414 (467)
197 1r6b_X CLPA protein; AAA+, N-t 98.0 6.9E-05 2.4E-09 82.4 15.4 155 90-263 186-362 (758)
198 3hu3_A Transitional endoplasmi 98.0 5.9E-05 2E-09 77.8 13.6 179 90-295 204-414 (489)
199 4b4t_I 26S protease regulatory 98.0 0.00018 6.1E-09 71.7 16.2 170 91-288 183-387 (437)
200 1io0_A Tropomodulin; LRR prote 97.9 4.5E-06 1.5E-10 74.6 3.7 105 449-556 34-162 (185)
201 3un9_A NLR family member X1; l 97.9 1.4E-06 4.7E-11 87.2 0.1 104 451-556 101-222 (372)
202 4b4t_M 26S protease regulatory 97.9 3.9E-05 1.3E-09 77.2 10.5 171 90-288 181-386 (434)
203 2w58_A DNAI, primosome compone 97.9 1.3E-05 4.4E-10 72.7 5.9 95 90-205 25-126 (202)
204 4b4t_K 26S protease regulatory 97.9 0.00032 1.1E-08 70.5 16.4 171 90-288 172-378 (428)
205 3sb4_A Hypothetical leucine ri 97.9 1.1E-05 3.8E-10 79.3 5.6 80 472-555 225-307 (329)
206 2ce7_A Cell division protein F 97.9 0.00023 7.8E-09 72.8 15.1 173 90-289 16-221 (476)
207 4fcw_A Chaperone protein CLPB; 97.8 9.3E-05 3.2E-09 71.9 11.5 61 90-153 17-85 (311)
208 3ec2_A DNA replication protein 97.8 7.7E-06 2.6E-10 72.7 3.2 42 95-136 19-62 (180)
209 3co5_A Putative two-component 97.8 6.1E-06 2.1E-10 70.3 2.4 46 91-136 5-51 (143)
210 2bjv_A PSP operon transcriptio 97.8 6.5E-05 2.2E-09 71.2 9.0 47 90-136 6-53 (265)
211 1in4_A RUVB, holliday junction 97.7 0.0016 5.4E-08 63.9 18.1 47 90-136 25-75 (334)
212 2kjq_A DNAA-related protein; s 97.7 1.1E-05 3.7E-10 69.1 1.9 26 111-136 35-60 (149)
213 1ojl_A Transcriptional regulat 97.7 8.9E-05 3.1E-09 71.7 8.4 47 90-136 2-49 (304)
214 2c9o_A RUVB-like 1; hexameric 97.6 0.00025 8.7E-09 72.8 10.8 47 90-136 37-87 (456)
215 3pxi_A Negative regulator of g 97.6 4.4E-05 1.5E-09 83.9 5.2 47 90-136 491-545 (758)
216 3ogk_B Coronatine-insensitive 97.6 4.9E-05 1.7E-09 81.1 5.4 105 449-555 190-303 (592)
217 3e4g_A ATP synthase subunit S, 97.5 6.1E-05 2.1E-09 65.8 4.5 85 451-536 61-154 (176)
218 1iy2_A ATP-dependent metallopr 97.5 0.0018 6.2E-08 61.6 14.8 172 90-289 40-245 (278)
219 3rw6_A Nuclear RNA export fact 97.5 4.7E-05 1.6E-09 71.7 3.2 83 471-556 139-231 (267)
220 3m6a_A ATP-dependent protease 97.5 0.00061 2.1E-08 71.4 12.0 46 91-136 82-132 (543)
221 3cf2_A TER ATPase, transitiona 97.5 0.00048 1.7E-08 74.7 11.3 172 91-289 205-407 (806)
222 3ogk_B Coronatine-insensitive 97.4 2.5E-05 8.5E-10 83.4 1.0 36 494-530 216-251 (592)
223 2dhr_A FTSH; AAA+ protein, hex 97.4 0.0014 4.9E-08 67.3 13.4 169 90-289 31-236 (499)
224 3t15_A Ribulose bisphosphate c 97.4 0.0015 5E-08 62.8 12.7 26 111-136 35-60 (293)
225 1ixz_A ATP-dependent metallopr 97.4 0.0023 7.7E-08 60.0 13.4 172 90-289 16-221 (254)
226 2p1m_B Transport inhibitor res 97.3 5.1E-05 1.7E-09 81.0 1.5 105 449-554 128-244 (594)
227 2ra8_A Uncharacterized protein 97.3 9.2E-05 3.1E-09 73.4 2.7 105 450-555 192-317 (362)
228 2x8a_A Nuclear valosin-contain 97.3 0.0075 2.5E-07 57.1 15.9 151 90-264 10-192 (274)
229 2p1m_B Transport inhibitor res 97.2 0.00017 5.9E-09 76.8 4.2 77 450-528 155-241 (594)
230 2vhj_A Ntpase P4, P4; non- hyd 97.2 0.00026 9E-09 67.7 4.4 69 111-204 122-192 (331)
231 1io0_A Tropomodulin; LRR prote 97.2 0.00014 4.7E-09 64.8 2.3 83 470-555 33-133 (185)
232 3hr8_A Protein RECA; alpha and 97.1 0.0012 4.1E-08 64.7 8.9 86 111-204 60-149 (356)
233 1ypw_A Transitional endoplasmi 97.1 0.0015 5E-08 71.9 10.3 154 90-267 204-389 (806)
234 2cvh_A DNA repair and recombin 97.1 0.0013 4.6E-08 59.9 8.5 88 110-204 18-115 (220)
235 3e4g_A ATP synthase subunit S, 97.1 0.00015 5.1E-09 63.3 1.7 84 471-556 59-150 (176)
236 1n0w_A DNA repair protein RAD5 97.0 0.002 6.7E-08 59.8 8.9 91 111-203 23-128 (243)
237 1r6b_X CLPA protein; AAA+, N-t 97.0 0.00076 2.6E-08 74.1 6.8 47 90-136 458-512 (758)
238 2ra8_A Uncharacterized protein 97.0 0.001 3.4E-08 65.9 6.9 107 448-556 169-290 (362)
239 1v5w_A DMC1, meiotic recombina 97.0 0.0038 1.3E-07 61.3 11.0 60 110-170 120-182 (343)
240 2z43_A DNA repair and recombin 96.9 0.003 1E-07 61.5 9.8 92 111-203 106-212 (324)
241 3io5_A Recombination and repai 96.9 0.0023 7.8E-08 61.0 8.5 85 114-204 30-121 (333)
242 1qvr_A CLPB protein; coiled co 96.9 0.0016 5.3E-08 72.5 8.5 46 91-136 559-612 (854)
243 1xp8_A RECA protein, recombina 96.9 0.0029 1E-07 62.4 9.1 86 111-204 73-162 (366)
244 1g5t_A COB(I)alamin adenosyltr 96.9 0.00053 1.8E-08 60.7 3.2 116 111-234 27-164 (196)
245 2zr9_A Protein RECA, recombina 96.8 0.0033 1.1E-07 61.7 8.9 86 111-204 60-149 (349)
246 2b8t_A Thymidine kinase; deoxy 96.8 0.00047 1.6E-08 62.9 2.6 113 110-232 10-125 (223)
247 1jr3_D DNA polymerase III, del 96.7 0.0071 2.4E-07 59.4 10.9 165 101-295 8-184 (343)
248 2qgz_A Helicase loader, putati 96.7 0.0014 4.7E-08 63.4 5.2 42 95-136 133-176 (308)
249 4fdw_A Leucine rich hypothetic 96.7 0.0013 4.3E-08 66.3 5.2 103 447-554 176-309 (401)
250 3ice_A Transcription terminati 96.7 0.00078 2.7E-08 65.9 3.1 54 101-155 163-216 (422)
251 1u94_A RECA protein, recombina 96.7 0.0046 1.6E-07 60.8 8.7 85 111-203 62-150 (356)
252 2i1q_A DNA repair and recombin 96.6 0.0053 1.8E-07 59.7 8.5 92 111-203 97-213 (322)
253 2w0m_A SSO2452; RECA, SSPF, un 96.5 0.0068 2.3E-07 55.6 8.4 39 111-152 22-60 (235)
254 1rz3_A Hypothetical protein rb 96.5 0.0033 1.1E-07 56.6 5.8 43 94-136 2-46 (201)
255 3cf2_A TER ATPase, transitiona 96.4 0.0065 2.2E-07 65.9 8.8 171 90-288 477-682 (806)
256 2r44_A Uncharacterized protein 96.4 0.0016 5.6E-08 63.7 3.8 44 90-136 27-70 (331)
257 3nbx_X ATPase RAVA; AAA+ ATPas 96.4 0.0026 8.8E-08 65.5 5.1 44 90-136 22-65 (500)
258 2ck3_D ATP synthase subunit be 96.3 0.0098 3.3E-07 59.9 8.7 101 101-203 142-262 (482)
259 3rfe_A Platelet glycoprotein I 96.3 0.003 1E-07 52.3 4.1 55 476-535 11-68 (130)
260 1sky_E F1-ATPase, F1-ATP synth 96.3 0.007 2.4E-07 61.1 7.4 62 103-166 142-204 (473)
261 3c8u_A Fructokinase; YP_612366 96.3 0.0038 1.3E-07 56.5 5.0 40 97-136 6-46 (208)
262 3dm5_A SRP54, signal recogniti 96.2 0.024 8.4E-07 57.0 11.0 26 111-136 99-124 (443)
263 3bh0_A DNAB-like replicative h 96.2 0.023 8E-07 54.9 10.6 53 110-167 66-118 (315)
264 4a74_A DNA repair and recombin 96.2 0.018 6.3E-07 52.6 9.5 59 111-170 24-85 (231)
265 1fx0_B ATP synthase beta chain 96.2 0.014 4.7E-07 59.1 8.9 100 102-203 155-275 (498)
266 3lda_A DNA repair protein RAD5 96.2 0.019 6.4E-07 57.3 9.8 60 111-171 177-239 (400)
267 1qhx_A CPT, protein (chloramph 96.1 0.0033 1.1E-07 55.1 3.6 25 112-136 3-27 (178)
268 2px0_A Flagellar biosynthesis 96.1 0.018 6.3E-07 55.0 8.9 87 111-203 104-191 (296)
269 1g8p_A Magnesium-chelatase 38 96.1 0.0032 1.1E-07 62.0 3.7 46 90-136 24-69 (350)
270 3hws_A ATP-dependent CLP prote 96.0 0.0057 1.9E-07 60.6 5.4 46 91-136 16-75 (363)
271 4fdw_A Leucine rich hypothetic 96.0 0.011 3.6E-07 59.5 7.4 102 446-552 266-377 (401)
272 1pzn_A RAD51, DNA repair and r 96.0 0.021 7.1E-07 56.1 9.1 94 110-204 129-241 (349)
273 3kb2_A SPBC2 prophage-derived 96.0 0.0038 1.3E-07 54.3 3.3 24 113-136 2-25 (173)
274 1um8_A ATP-dependent CLP prote 95.9 0.0075 2.6E-07 60.1 5.4 47 90-136 21-96 (376)
275 1vma_A Cell division protein F 95.9 0.022 7.6E-07 54.6 8.5 105 96-203 81-195 (306)
276 3lw7_A Adenylate kinase relate 95.8 0.0046 1.6E-07 53.9 3.3 23 113-136 2-24 (179)
277 3vaa_A Shikimate kinase, SK; s 95.8 0.0047 1.6E-07 55.4 3.4 26 111-136 24-49 (199)
278 1zp6_A Hypothetical protein AT 95.8 0.0049 1.7E-07 54.7 3.5 26 111-136 8-33 (191)
279 2dr3_A UPF0273 protein PH0284; 95.8 0.019 6.5E-07 53.1 7.6 40 111-153 22-61 (247)
280 3cmu_A Protein RECA, recombina 95.8 0.018 6.3E-07 68.1 8.8 86 111-204 1426-1515(2050)
281 3e70_C DPA, signal recognition 95.8 0.049 1.7E-06 52.7 10.5 58 110-170 127-185 (328)
282 1kgd_A CASK, peripheral plasma 95.8 0.0055 1.9E-07 53.9 3.5 26 111-136 4-29 (180)
283 1tue_A Replication protein E1; 95.8 0.01 3.5E-07 52.7 5.1 41 96-136 42-82 (212)
284 1ly1_A Polynucleotide kinase; 95.7 0.0059 2E-07 53.5 3.5 22 113-134 3-24 (181)
285 3trf_A Shikimate kinase, SK; a 95.7 0.0058 2E-07 54.0 3.3 25 112-136 5-29 (185)
286 3uie_A Adenylyl-sulfate kinase 95.7 0.0066 2.3E-07 54.4 3.7 28 109-136 22-49 (200)
287 2rhm_A Putative kinase; P-loop 95.6 0.0068 2.3E-07 53.8 3.6 26 111-136 4-29 (193)
288 1kag_A SKI, shikimate kinase I 95.6 0.0055 1.9E-07 53.4 2.9 25 112-136 4-28 (173)
289 3tau_A Guanylate kinase, GMP k 95.6 0.0073 2.5E-07 54.6 3.6 27 110-136 6-32 (208)
290 1odf_A YGR205W, hypothetical 3 95.6 0.013 4.5E-07 55.8 5.6 27 110-136 29-55 (290)
291 1nks_A Adenylate kinase; therm 95.6 0.0068 2.3E-07 53.8 3.4 24 113-136 2-25 (194)
292 4a1f_A DNAB helicase, replicat 95.5 0.026 8.9E-07 54.8 7.6 52 111-167 45-96 (338)
293 1kht_A Adenylate kinase; phosp 95.5 0.007 2.4E-07 53.6 3.3 24 113-136 4-27 (192)
294 3kl4_A SRP54, signal recogniti 95.5 0.066 2.3E-06 53.8 10.7 91 111-204 96-189 (433)
295 1ex7_A Guanylate kinase; subst 95.5 0.0056 1.9E-07 54.1 2.5 24 113-136 2-25 (186)
296 2hf9_A Probable hydrogenase ni 95.5 0.014 4.8E-07 53.2 5.4 39 97-136 24-62 (226)
297 4eun_A Thermoresistant glucoki 95.5 0.0075 2.6E-07 54.1 3.4 27 110-136 27-53 (200)
298 4h09_A Hypothetical leucine ri 95.5 0.025 8.5E-07 56.2 7.6 79 470-552 260-340 (379)
299 2ga8_A Hypothetical 39.9 kDa p 95.5 0.016 5.4E-07 56.3 5.8 44 93-136 2-48 (359)
300 3iij_A Coilin-interacting nucl 95.5 0.0066 2.3E-07 53.4 2.9 26 111-136 10-35 (180)
301 2qor_A Guanylate kinase; phosp 95.5 0.0068 2.3E-07 54.6 3.0 26 111-136 11-36 (204)
302 3t61_A Gluconokinase; PSI-biol 95.5 0.0062 2.1E-07 54.7 2.7 25 112-136 18-42 (202)
303 3tr0_A Guanylate kinase, GMP k 95.4 0.0086 2.9E-07 53.8 3.6 26 111-136 6-31 (205)
304 3rfe_A Platelet glycoprotein I 95.4 0.02 7E-07 47.2 5.6 52 455-508 12-65 (130)
305 2ffh_A Protein (FFH); SRP54, s 95.4 0.043 1.5E-06 55.0 8.9 89 111-203 97-189 (425)
306 2yvu_A Probable adenylyl-sulfa 95.4 0.0086 2.9E-07 52.9 3.4 27 110-136 11-37 (186)
307 1knq_A Gluconate kinase; ALFA/ 95.4 0.0097 3.3E-07 51.9 3.7 26 111-136 7-32 (175)
308 1gvn_B Zeta; postsegregational 95.4 0.0099 3.4E-07 56.7 4.0 26 111-136 32-57 (287)
309 1y63_A LMAJ004144AAA protein; 95.4 0.01 3.4E-07 52.4 3.7 25 111-135 9-33 (184)
310 3tlx_A Adenylate kinase 2; str 95.3 0.019 6.5E-07 53.2 5.7 43 94-136 10-53 (243)
311 2ze6_A Isopentenyl transferase 95.3 0.0089 3E-07 55.8 3.4 24 113-136 2-25 (253)
312 1zuh_A Shikimate kinase; alpha 95.3 0.0092 3.1E-07 51.7 3.3 26 111-136 6-31 (168)
313 2xxa_A Signal recognition part 95.3 0.064 2.2E-06 54.1 9.9 91 111-203 99-192 (433)
314 4gt6_A Cell surface protein; l 95.3 0.027 9.1E-07 56.4 7.2 59 470-532 308-367 (394)
315 1j8m_F SRP54, signal recogniti 95.3 0.043 1.5E-06 52.4 8.2 89 112-203 98-189 (297)
316 1tev_A UMP-CMP kinase; ploop, 95.3 0.0095 3.2E-07 52.9 3.4 25 112-136 3-27 (196)
317 1g41_A Heat shock protein HSLU 95.3 0.013 4.3E-07 59.1 4.6 47 90-136 15-74 (444)
318 3cm0_A Adenylate kinase; ATP-b 95.3 0.011 3.7E-07 52.2 3.7 26 111-136 3-28 (186)
319 3umf_A Adenylate kinase; rossm 95.3 0.011 3.7E-07 53.6 3.7 27 110-136 27-53 (217)
320 2c95_A Adenylate kinase 1; tra 95.3 0.0098 3.4E-07 52.9 3.4 26 111-136 8-33 (196)
321 2j41_A Guanylate kinase; GMP, 95.3 0.011 3.6E-07 53.2 3.7 26 111-136 5-30 (207)
322 1via_A Shikimate kinase; struc 95.3 0.0079 2.7E-07 52.6 2.7 24 113-136 5-28 (175)
323 3ney_A 55 kDa erythrocyte memb 95.3 0.011 3.7E-07 52.6 3.6 26 111-136 18-43 (197)
324 2jaq_A Deoxyguanosine kinase; 95.3 0.0095 3.2E-07 53.4 3.3 23 114-136 2-24 (205)
325 1ukz_A Uridylate kinase; trans 95.3 0.012 4E-07 52.9 3.9 26 111-136 14-39 (203)
326 4gp7_A Metallophosphoesterase; 95.2 0.0094 3.2E-07 51.9 3.1 23 111-133 8-30 (171)
327 3l0o_A Transcription terminati 95.2 0.0061 2.1E-07 59.5 1.9 54 100-154 163-216 (427)
328 3a00_A Guanylate kinase, GMP k 95.2 0.0086 2.9E-07 53.0 2.8 24 113-136 2-25 (186)
329 2r6a_A DNAB helicase, replicat 95.2 0.25 8.6E-06 50.3 14.2 52 110-165 201-252 (454)
330 2plr_A DTMP kinase, probable t 95.2 0.011 3.8E-07 53.3 3.6 25 112-136 4-28 (213)
331 3asz_A Uridine kinase; cytidin 95.2 0.011 3.9E-07 53.3 3.6 27 110-136 4-30 (211)
332 2wsm_A Hydrogenase expression/ 95.2 0.015 5.2E-07 52.8 4.5 42 94-136 13-54 (221)
333 2vli_A Antibiotic resistance p 95.2 0.0082 2.8E-07 52.8 2.5 25 112-136 5-29 (183)
334 1ye8_A Protein THEP1, hypothet 95.1 0.012 3.9E-07 51.7 3.4 23 114-136 2-24 (178)
335 2bdt_A BH3686; alpha-beta prot 95.1 0.013 4.3E-07 52.0 3.7 23 113-135 3-25 (189)
336 3tqc_A Pantothenate kinase; bi 95.1 0.02 6.9E-07 55.2 5.3 45 92-136 69-116 (321)
337 2iyv_A Shikimate kinase, SK; t 95.1 0.0086 2.9E-07 52.8 2.5 24 113-136 3-26 (184)
338 1uf9_A TT1252 protein; P-loop, 95.1 0.013 4.5E-07 52.4 3.8 26 110-135 6-31 (203)
339 2qt1_A Nicotinamide riboside k 95.1 0.013 4.4E-07 52.8 3.7 26 111-136 20-45 (207)
340 2bwj_A Adenylate kinase 5; pho 95.1 0.011 3.8E-07 52.7 3.2 26 111-136 11-36 (199)
341 1lvg_A Guanylate kinase, GMP k 95.1 0.0097 3.3E-07 53.3 2.8 26 111-136 3-28 (198)
342 3vr4_D V-type sodium ATPase su 95.1 0.016 5.5E-07 58.0 4.5 102 102-203 141-257 (465)
343 2cdn_A Adenylate kinase; phosp 95.1 0.013 4.6E-07 52.4 3.7 26 111-136 19-44 (201)
344 1e6c_A Shikimate kinase; phosp 95.0 0.01 3.5E-07 51.6 2.7 24 113-136 3-26 (173)
345 3a4m_A L-seryl-tRNA(SEC) kinas 95.0 0.014 4.7E-07 54.8 3.7 26 111-136 3-28 (260)
346 2if2_A Dephospho-COA kinase; a 95.0 0.013 4.3E-07 52.7 3.3 22 113-134 2-23 (204)
347 1cke_A CK, MSSA, protein (cyti 95.0 0.012 4.3E-07 53.7 3.3 25 112-136 5-29 (227)
348 4gt6_A Cell surface protein; l 95.0 0.021 7.1E-07 57.2 5.1 102 447-554 261-366 (394)
349 1q57_A DNA primase/helicase; d 95.0 0.1 3.6E-06 54.0 10.6 53 111-167 241-293 (503)
350 1ls1_A Signal recognition part 95.0 0.067 2.3E-06 51.1 8.4 90 111-203 97-189 (295)
351 3k1j_A LON protease, ATP-depen 94.9 0.033 1.1E-06 59.1 6.8 44 90-136 41-84 (604)
352 2wwf_A Thymidilate kinase, put 94.9 0.014 4.7E-07 52.7 3.3 26 111-136 9-34 (212)
353 1qf9_A UMP/CMP kinase, protein 94.9 0.014 4.9E-07 51.6 3.4 26 111-136 5-30 (194)
354 1nn5_A Similar to deoxythymidy 94.9 0.015 5.1E-07 52.6 3.5 26 111-136 8-33 (215)
355 2pt5_A Shikimate kinase, SK; a 94.9 0.014 4.9E-07 50.4 3.3 23 114-136 2-24 (168)
356 3fwy_A Light-independent proto 94.9 0.014 5E-07 56.2 3.6 41 110-153 46-86 (314)
357 2bbw_A Adenylate kinase 4, AK4 94.9 0.014 4.9E-07 54.2 3.4 26 111-136 26-51 (246)
358 2pbr_A DTMP kinase, thymidylat 94.9 0.015 5E-07 51.7 3.3 23 114-136 2-24 (195)
359 2p5t_B PEZT; postsegregational 94.9 0.022 7.6E-07 53.1 4.7 26 111-136 31-56 (253)
360 1znw_A Guanylate kinase, GMP k 94.9 0.016 5.3E-07 52.3 3.5 26 111-136 19-44 (207)
361 1aky_A Adenylate kinase; ATP:A 94.9 0.015 5.1E-07 52.9 3.4 26 111-136 3-28 (220)
362 1jjv_A Dephospho-COA kinase; P 94.9 0.015 5.3E-07 52.2 3.5 22 113-134 3-24 (206)
363 1zd8_A GTP:AMP phosphotransfer 94.8 0.015 5.2E-07 53.2 3.4 26 111-136 6-31 (227)
364 2v54_A DTMP kinase, thymidylat 94.8 0.017 5.7E-07 51.8 3.6 25 112-136 4-28 (204)
365 1z6g_A Guanylate kinase; struc 94.8 0.014 4.7E-07 53.2 2.9 26 111-136 22-47 (218)
366 1htw_A HI0065; nucleotide-bind 94.8 0.02 6.8E-07 49.0 3.8 27 110-136 31-57 (158)
367 1s96_A Guanylate kinase, GMP k 94.8 0.017 5.8E-07 52.5 3.5 27 110-136 14-40 (219)
368 3aez_A Pantothenate kinase; tr 94.7 0.018 6.2E-07 55.5 3.8 27 110-136 88-114 (312)
369 3gqb_B V-type ATP synthase bet 94.7 0.025 8.5E-07 56.7 4.8 102 102-203 137-260 (464)
370 2jeo_A Uridine-cytidine kinase 94.7 0.019 6.4E-07 53.3 3.8 27 110-136 23-49 (245)
371 1uj2_A Uridine-cytidine kinase 94.7 0.019 6.3E-07 53.6 3.7 27 110-136 20-46 (252)
372 4e22_A Cytidylate kinase; P-lo 94.7 0.018 6.2E-07 53.7 3.7 26 111-136 26-51 (252)
373 1xjc_A MOBB protein homolog; s 94.7 0.018 6.3E-07 49.7 3.3 26 111-136 3-28 (169)
374 2grj_A Dephospho-COA kinase; T 94.7 0.021 7.3E-07 50.7 3.8 27 110-136 10-36 (192)
375 3fb4_A Adenylate kinase; psych 94.7 0.017 5.9E-07 52.3 3.3 23 114-136 2-24 (216)
376 1zu4_A FTSY; GTPase, signal re 94.7 0.063 2.2E-06 51.8 7.4 26 111-136 104-129 (320)
377 3dl0_A Adenylate kinase; phosp 94.6 0.019 6.3E-07 52.1 3.5 23 114-136 2-24 (216)
378 1zak_A Adenylate kinase; ATP:A 94.6 0.015 5.3E-07 52.9 2.9 26 111-136 4-29 (222)
379 3cmu_A Protein RECA, recombina 94.6 0.076 2.6E-06 63.0 9.2 86 111-204 382-471 (2050)
380 3bgw_A DNAB-like replicative h 94.6 0.059 2E-06 54.6 7.5 52 110-166 195-246 (444)
381 2j37_W Signal recognition part 94.6 0.21 7.1E-06 51.3 11.5 26 111-136 100-125 (504)
382 2q6t_A DNAB replication FORK h 94.6 0.2 6.8E-06 50.8 11.4 53 111-167 199-251 (444)
383 2qe7_A ATP synthase subunit al 94.6 0.18 6E-06 51.2 10.6 98 101-203 151-263 (502)
384 4fs7_A Uncharacterized protein 94.6 0.024 8.3E-07 56.7 4.4 95 449-549 295-392 (394)
385 2z0h_A DTMP kinase, thymidylat 94.6 0.019 6.6E-07 51.0 3.3 23 114-136 2-24 (197)
386 1gtv_A TMK, thymidylate kinase 94.6 0.011 3.8E-07 53.5 1.7 24 113-136 1-24 (214)
387 1m7g_A Adenylylsulfate kinase; 94.5 0.022 7.6E-07 51.4 3.7 27 110-136 23-49 (211)
388 3cmw_A Protein RECA, recombina 94.5 0.054 1.8E-06 63.4 7.5 86 110-203 1429-1518(1706)
389 2pez_A Bifunctional 3'-phospho 94.5 0.024 8.2E-07 49.6 3.6 26 111-136 4-29 (179)
390 3cmw_A Protein RECA, recombina 94.4 0.07 2.4E-06 62.4 8.2 86 111-204 382-471 (1706)
391 3mfy_A V-type ATP synthase alp 94.4 0.088 3E-06 53.8 8.0 59 101-164 216-275 (588)
392 1sq5_A Pantothenate kinase; P- 94.4 0.045 1.6E-06 52.6 5.7 27 110-136 78-104 (308)
393 1rj9_A FTSY, signal recognitio 94.3 0.026 8.7E-07 54.2 3.7 26 111-136 101-126 (304)
394 3oaa_A ATP synthase subunit al 94.3 0.28 9.5E-06 49.6 11.2 97 102-203 152-263 (513)
395 3be4_A Adenylate kinase; malar 94.2 0.022 7.7E-07 51.7 3.0 25 112-136 5-29 (217)
396 1u0j_A DNA replication protein 94.2 0.047 1.6E-06 50.8 5.2 39 98-136 89-128 (267)
397 3sr0_A Adenylate kinase; phosp 94.2 0.026 8.8E-07 50.7 3.3 23 114-136 2-24 (206)
398 1vht_A Dephospho-COA kinase; s 94.2 0.03 1E-06 50.8 3.8 23 112-134 4-26 (218)
399 3a8t_A Adenylate isopentenyltr 94.1 0.029 9.9E-07 54.1 3.7 26 111-136 39-64 (339)
400 3d3q_A TRNA delta(2)-isopenten 94.1 0.028 9.6E-07 54.4 3.6 24 113-136 8-31 (340)
401 3exa_A TRNA delta(2)-isopenten 94.1 0.03 1E-06 53.3 3.7 25 112-136 3-27 (322)
402 2pt7_A CAG-ALFA; ATPase, prote 94.1 0.052 1.8E-06 52.7 5.5 107 111-234 170-276 (330)
403 3r20_A Cytidylate kinase; stru 94.1 0.027 9.4E-07 51.5 3.3 26 111-136 8-33 (233)
404 2f6r_A COA synthase, bifunctio 94.1 0.029 1E-06 53.2 3.6 24 111-134 74-97 (281)
405 2r9v_A ATP synthase subunit al 94.1 0.063 2.2E-06 54.4 6.1 97 102-203 165-276 (515)
406 3nwj_A ATSK2; P loop, shikimat 94.1 0.023 7.7E-07 52.8 2.7 25 112-136 48-72 (250)
407 2ehv_A Hypothetical protein PH 94.1 0.027 9.1E-07 52.2 3.3 24 111-134 29-52 (251)
408 3b85_A Phosphate starvation-in 94.1 0.035 1.2E-06 49.9 3.9 25 111-135 21-45 (208)
409 2yhs_A FTSY, cell division pro 94.0 0.11 3.9E-06 52.7 7.9 26 111-136 292-317 (503)
410 3lnc_A Guanylate kinase, GMP k 94.0 0.019 6.7E-07 52.6 2.2 26 111-136 26-52 (231)
411 4eaq_A DTMP kinase, thymidylat 94.0 0.059 2E-06 49.3 5.4 26 111-136 25-50 (229)
412 1ak2_A Adenylate kinase isoenz 94.0 0.031 1.1E-06 51.3 3.6 26 111-136 15-40 (233)
413 3ake_A Cytidylate kinase; CMP 94.0 0.03 1E-06 50.3 3.3 23 114-136 4-26 (208)
414 3crm_A TRNA delta(2)-isopenten 94.0 0.031 1.1E-06 53.7 3.6 25 112-136 5-29 (323)
415 2c61_A A-type ATP synthase non 94.0 0.049 1.7E-06 54.9 5.1 102 102-203 142-258 (469)
416 2f1r_A Molybdopterin-guanine d 94.0 0.021 7E-07 49.7 2.1 24 113-136 3-26 (171)
417 2xb4_A Adenylate kinase; ATP-b 94.0 0.03 1E-06 51.1 3.3 23 114-136 2-24 (223)
418 1e4v_A Adenylate kinase; trans 93.9 0.03 1E-06 50.6 3.2 23 114-136 2-24 (214)
419 3tif_A Uncharacterized ABC tra 93.9 0.029 9.9E-07 51.6 3.1 27 110-136 29-55 (235)
420 2i3b_A HCR-ntpase, human cance 93.9 0.028 9.5E-07 49.8 2.8 24 113-136 2-25 (189)
421 2ck3_A ATP synthase subunit al 93.8 0.11 3.7E-06 52.8 7.3 103 101-203 151-271 (510)
422 3b9q_A Chloroplast SRP recepto 93.8 0.037 1.3E-06 53.0 3.8 26 111-136 99-124 (302)
423 1np6_A Molybdopterin-guanine d 93.8 0.038 1.3E-06 48.1 3.4 26 111-136 5-30 (174)
424 3upu_A ATP-dependent DNA helic 93.8 0.068 2.3E-06 54.6 5.9 41 94-136 29-69 (459)
425 2onk_A Molybdate/tungstate ABC 93.8 0.036 1.2E-06 51.1 3.5 26 110-136 23-48 (240)
426 3foz_A TRNA delta(2)-isopenten 93.8 0.042 1.4E-06 52.2 4.0 26 111-136 9-34 (316)
427 3p32_A Probable GTPase RV1496/ 93.7 0.075 2.6E-06 52.2 5.9 38 99-136 65-103 (355)
428 1fx0_A ATP synthase alpha chai 93.7 0.082 2.8E-06 53.6 6.1 89 110-203 161-264 (507)
429 1cr0_A DNA primase/helicase; R 93.7 0.076 2.6E-06 50.7 5.8 53 110-166 33-85 (296)
430 2pcj_A ABC transporter, lipopr 93.7 0.032 1.1E-06 50.9 2.9 26 111-136 29-54 (224)
431 2qmh_A HPR kinase/phosphorylas 93.7 0.038 1.3E-06 48.8 3.2 26 111-136 33-58 (205)
432 2cbz_A Multidrug resistance-as 93.7 0.034 1.2E-06 51.2 3.1 27 110-136 29-55 (237)
433 3vr4_A V-type sodium ATPase ca 93.6 0.32 1.1E-05 50.0 10.3 59 101-164 221-280 (600)
434 3end_A Light-independent proto 93.6 0.058 2E-06 51.8 4.7 43 109-154 38-80 (307)
435 2v9p_A Replication protein E1; 93.5 0.042 1.4E-06 52.5 3.6 27 110-136 124-150 (305)
436 1b0u_A Histidine permease; ABC 93.5 0.036 1.2E-06 51.9 3.1 27 110-136 30-56 (262)
437 3f9v_A Minichromosome maintena 93.5 0.023 7.7E-07 60.1 1.8 46 90-136 295-351 (595)
438 1a7j_A Phosphoribulokinase; tr 93.5 0.024 8.1E-07 54.1 1.8 26 111-136 4-29 (290)
439 3iqw_A Tail-anchored protein t 93.5 0.11 3.7E-06 50.5 6.4 45 109-156 13-57 (334)
440 2ixe_A Antigen peptide transpo 93.4 0.063 2.2E-06 50.5 4.5 27 110-136 43-69 (271)
441 2eyu_A Twitching motility prot 93.4 0.049 1.7E-06 50.9 3.8 110 110-235 23-135 (261)
442 1oix_A RAS-related protein RAB 93.4 0.044 1.5E-06 48.4 3.3 26 111-136 28-53 (191)
443 3zvl_A Bifunctional polynucleo 93.4 0.043 1.5E-06 55.3 3.6 27 110-136 256-282 (416)
444 2olj_A Amino acid ABC transpor 93.4 0.04 1.4E-06 51.6 3.1 27 110-136 48-74 (263)
445 3lv8_A DTMP kinase, thymidylat 93.4 0.097 3.3E-06 48.0 5.6 37 111-149 26-62 (236)
446 1mv5_A LMRA, multidrug resista 93.4 0.043 1.5E-06 50.8 3.2 27 110-136 26-52 (243)
447 2zu0_C Probable ATP-dependent 93.3 0.046 1.6E-06 51.3 3.4 26 110-135 44-69 (267)
448 1ltq_A Polynucleotide kinase; 93.3 0.046 1.6E-06 52.3 3.5 24 113-136 3-26 (301)
449 2wji_A Ferrous iron transport 93.3 0.053 1.8E-06 46.5 3.6 23 113-135 4-26 (165)
450 3gfo_A Cobalt import ATP-bindi 93.2 0.04 1.4E-06 51.9 2.9 26 111-136 33-58 (275)
451 3io3_A DEHA2D07832P; chaperone 93.2 0.096 3.3E-06 51.2 5.6 47 109-156 15-61 (348)
452 3hjn_A DTMP kinase, thymidylat 93.2 0.11 3.6E-06 46.3 5.5 23 114-136 2-24 (197)
453 1vpl_A ABC transporter, ATP-bi 93.2 0.044 1.5E-06 51.0 3.1 27 110-136 39-65 (256)
454 2ghi_A Transport protein; mult 93.2 0.045 1.5E-06 51.2 3.1 27 110-136 44-70 (260)
455 2d2e_A SUFC protein; ABC-ATPas 93.2 0.048 1.6E-06 50.7 3.3 25 111-135 28-52 (250)
456 4edh_A DTMP kinase, thymidylat 93.2 0.13 4.5E-06 46.4 6.1 26 111-136 5-30 (213)
457 2zej_A Dardarin, leucine-rich 93.2 0.039 1.3E-06 48.4 2.6 22 114-135 4-25 (184)
458 1ji0_A ABC transporter; ATP bi 93.2 0.044 1.5E-06 50.6 3.0 26 111-136 31-56 (240)
459 2og2_A Putative signal recogni 93.2 0.054 1.8E-06 53.1 3.7 26 111-136 156-181 (359)
460 4g1u_C Hemin import ATP-bindin 93.2 0.043 1.5E-06 51.5 2.9 27 110-136 35-61 (266)
461 4tmk_A Protein (thymidylate ki 93.1 0.12 4.1E-06 46.6 5.7 25 112-136 3-27 (213)
462 2pze_A Cystic fibrosis transme 93.1 0.045 1.5E-06 50.1 2.9 26 111-136 33-58 (229)
463 1g6h_A High-affinity branched- 93.1 0.044 1.5E-06 51.2 3.0 26 111-136 32-57 (257)
464 2ocp_A DGK, deoxyguanosine kin 93.1 0.056 1.9E-06 49.9 3.7 25 112-136 2-26 (241)
465 1sgw_A Putative ABC transporte 93.1 0.038 1.3E-06 50.0 2.4 26 111-136 34-59 (214)
466 2f9l_A RAB11B, member RAS onco 93.1 0.049 1.7E-06 48.5 3.1 25 112-136 5-29 (199)
467 2ff7_A Alpha-hemolysin translo 93.1 0.046 1.6E-06 50.7 3.0 26 111-136 34-59 (247)
468 2dyk_A GTP-binding protein; GT 93.1 0.058 2E-06 45.8 3.4 24 113-136 2-25 (161)
469 4fs7_A Uncharacterized protein 93.1 0.069 2.4E-06 53.3 4.5 78 470-552 294-373 (394)
470 1svm_A Large T antigen; AAA+ f 93.1 0.1 3.6E-06 51.4 5.6 27 110-136 167-193 (377)
471 1q3t_A Cytidylate kinase; nucl 93.0 0.057 1.9E-06 49.6 3.6 26 111-136 15-40 (236)
472 1yrb_A ATP(GTP)binding protein 93.0 0.057 1.9E-06 50.4 3.6 26 111-136 13-38 (262)
473 2yz2_A Putative ABC transporte 93.0 0.05 1.7E-06 51.0 3.1 27 110-136 31-57 (266)
474 2r8r_A Sensor protein; KDPD, P 92.9 0.098 3.4E-06 47.3 4.8 38 113-153 7-44 (228)
475 1nlf_A Regulatory protein REPA 92.9 0.052 1.8E-06 51.3 3.2 26 111-136 29-54 (279)
476 2ged_A SR-beta, signal recogni 92.8 0.077 2.6E-06 46.7 4.0 26 111-136 47-72 (193)
477 2qi9_C Vitamin B12 import ATP- 92.8 0.052 1.8E-06 50.3 2.9 26 111-136 25-50 (249)
478 2vp4_A Deoxynucleoside kinase; 92.8 0.048 1.6E-06 49.9 2.7 26 110-135 18-43 (230)
479 2ce2_X GTPase HRAS; signaling 92.8 0.058 2E-06 45.9 3.0 23 114-136 5-27 (166)
480 2wjg_A FEOB, ferrous iron tran 92.8 0.073 2.5E-06 46.6 3.8 24 112-135 7-30 (188)
481 2nq2_C Hypothetical ABC transp 92.7 0.055 1.9E-06 50.4 2.9 26 111-136 30-55 (253)
482 2v3c_C SRP54, signal recogniti 92.7 0.079 2.7E-06 53.4 4.2 25 112-136 99-123 (432)
483 1z2a_A RAS-related protein RAB 92.6 0.063 2.1E-06 45.9 3.1 26 111-136 4-29 (168)
484 4b3f_X DNA-binding protein smu 92.6 0.13 4.4E-06 55.1 6.1 64 96-166 192-255 (646)
485 3eph_A TRNA isopentenyltransfe 92.6 0.067 2.3E-06 52.9 3.5 24 113-136 3-26 (409)
486 2ihy_A ABC transporter, ATP-bi 92.6 0.057 1.9E-06 51.0 2.9 26 111-136 46-71 (279)
487 1cp2_A CP2, nitrogenase iron p 92.6 0.12 4E-06 48.5 5.2 38 113-153 2-39 (269)
488 1g8f_A Sulfate adenylyltransfe 92.6 0.097 3.3E-06 53.7 4.8 44 93-136 375-419 (511)
489 2orw_A Thymidine kinase; TMTK, 92.5 0.075 2.6E-06 46.7 3.4 25 112-136 3-27 (184)
490 2nzj_A GTP-binding protein REM 92.5 0.062 2.1E-06 46.3 2.8 25 112-136 4-28 (175)
491 3sop_A Neuronal-specific septi 92.4 0.07 2.4E-06 50.1 3.3 23 114-136 4-26 (270)
492 1f6b_A SAR1; gtpases, N-termin 92.4 0.088 3E-06 46.8 3.8 34 102-135 15-48 (198)
493 2lkc_A Translation initiation 92.4 0.088 3E-06 45.5 3.7 27 110-136 6-32 (178)
494 1tq4_A IIGP1, interferon-induc 92.4 0.097 3.3E-06 52.3 4.4 26 111-136 68-93 (413)
495 3con_A GTPase NRAS; structural 92.3 0.071 2.4E-06 46.8 3.1 24 113-136 22-45 (190)
496 1p9r_A General secretion pathw 92.3 0.22 7.4E-06 49.9 6.9 27 110-136 165-191 (418)
497 3nh6_A ATP-binding cassette SU 92.3 0.055 1.9E-06 51.8 2.4 27 110-136 78-104 (306)
498 1u8z_A RAS-related protein RAL 92.3 0.075 2.6E-06 45.3 3.1 25 112-136 4-28 (168)
499 3kjh_A CO dehydrogenase/acetyl 92.3 0.15 5.3E-06 47.0 5.5 40 115-157 3-42 (254)
500 4gzl_A RAS-related C3 botulinu 92.2 0.083 2.8E-06 47.2 3.4 28 109-136 27-54 (204)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=2.3e-48 Score=413.51 Aligned_cols=312 Identities=14% Similarity=0.158 Sum_probs=249.1
Q ss_pred cchhHHHHHHHHHHhcc--CCeeEEEEEcCCCCcHHHHHHHHHh--hcccCCCCcceEEEEEeCCcc--CHHHHHHHHHH
Q 036236 93 VGLQSQLEQVWRCLVVE--ESVGIIGLYGMGGVGKTTLLTHINN--KFLENPINFDCVIWVVVSKDL--RLEKIQEDIGK 166 (557)
Q Consensus 93 vGr~~~~~~l~~~L~~~--~~~~vv~I~G~~GiGKTtLa~~v~~--~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~ 166 (557)
|||++++++|.++|..+ +..++|+|+||||+||||||+++|+ +. .+..+|++++||++++.. ++..++..|+.
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~ 209 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ-LIGINYDSIVWLKDSGTAPKSTFDLFTDILL 209 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS-TBTTTBSEEEEEECCCCSTTHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhH-HHhccCCcEEEEEECCCCCCCHHHHHHHHHH
Confidence 59999999999999742 3679999999999999999999998 33 457899999999999875 78999999999
Q ss_pred HhCCCCC-----CCCCCCHHHHHHHHHHHhcCC-cEEEEEccCCCccccccccccCCCCCCCCcEEEEeeCChHHHhccc
Q 036236 167 KIGLFDD-----SWKSKSVEEKAVDIFRSLREK-RFVLLLDDIWERVDLTKVGVPLPGPQNTTSKVVFTTRSIDVCGSME 240 (557)
Q Consensus 167 ~l~~~~~-----~~~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~~~~~~l~~~l~~~~~~~s~iliTtR~~~v~~~~~ 240 (557)
+++.... .....+.......+++.|+++ |+||||||||+..++ .+ +. ..| |+||||||+..++..+.
T Consensus 210 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~----~~-~~g-s~ilvTTR~~~v~~~~~ 282 (549)
T 2a5y_B 210 MLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RW----AQ-ELR-LRCLVTTRDVEISNAAS 282 (549)
T ss_dssp HHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HH----HH-HTT-CEEEEEESBGGGGGGCC
T ss_pred HHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cc----cc-cCC-CEEEEEcCCHHHHHHcC
Confidence 9986532 112334566788999999996 999999999987654 11 11 134 99999999999988775
Q ss_pred -CCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHHHHHhccCCCHHHHHHHHHHHHhcc
Q 036236 241 -SHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTIGRAMACKRTAEEWRHAVEVLRRSA 319 (557)
Q Consensus 241 -~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~~~~~~w~~~l~~l~~~~ 319 (557)
....|+|++|+.++|++||.++++... .++.+.+++++|+++|+|+||||+++|+.++.+ . |... +.+....
T Consensus 283 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~---w~~~-~~l~~~l 355 (549)
T 2a5y_B 283 QTCEFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T---FEKM-AQLNNKL 355 (549)
T ss_dssp SCEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S---HHHH-HHHHHHH
T ss_pred CCCeEEECCCCCHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h---HHHH-HHhHHHh
Confidence 346799999999999999999987543 246778899999999999999999999998764 2 5443 4444433
Q ss_pred cccCCchhhHhhhHhhhhccCCCcchhHHHh-----------hhccCCCCcccCHHHHHHHHHhc--CCccccc-chhHH
Q 036236 320 SEFAGLGEKVYSLLKFSYDSLQNETIKSCFL-----------YCCLYPEDYGILKWDLIDCWIGE--GFLEQSD-RLSAE 385 (557)
Q Consensus 320 ~~~~~~~~~i~~~l~~sy~~L~~~~~k~~~l-----------~~~~fp~~~~i~~~~li~~w~a~--g~i~~~~-~~~~~ 385 (557)
+... ...+..++.+||+.||+ ++|.||+ |||+||+++.|+ +.+|+|+ ||+.... ....+
T Consensus 356 ~~~~--~~~i~~~l~~Sy~~L~~-~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~ 428 (549)
T 2a5y_B 356 ESRG--LVGVECITPYSYKSLAM-ALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDD 428 (549)
T ss_dssp HHHC--SSTTCCCSSSSSSSHHH-HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTH
T ss_pred hccc--HHHHHHHHhcccccccH-HHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHH
Confidence 3221 24688999999999998 9999999 999999999999 8999999 9998765 34566
Q ss_pred HHHHHHHHHHHHhcccccc---CCCcEEeCHHHHHHHHHHhhhhc
Q 036236 386 YQGYYIVGTLVQACLLEEL---EDDKVKMHDVIRDMALWITSEIE 427 (557)
Q Consensus 386 ~~~~~~l~~L~~~sll~~~---~~~~~~mHdlv~~~a~~~~~~~~ 427 (557)
+.++ +|++|+++||++.. ...+|+|||+||+||++++.+.+
T Consensus 429 ~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 429 EVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp HHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred HHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 6776 99999999999976 24579999999999999886643
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=2.3e-40 Score=356.55 Aligned_cols=286 Identities=15% Similarity=0.208 Sum_probs=227.2
Q ss_pred cccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcce-EEEEEeCCccCHHHHHHHHHHHhC
Q 036236 91 TIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDC-VIWVVVSKDLRLEKIQEDIGKKIG 169 (557)
Q Consensus 91 ~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l~ 169 (557)
..|||++++++|.++|...+..++|+|+||||+||||||+++|++. .+..+|+. ++|+++++.++...++..|+..++
T Consensus 129 ~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~ 207 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHC-HHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhh-HHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 4599999999999999843568999999999999999999999865 34567885 999999999998888888877543
Q ss_pred CCCCC----CC-----CCCHHHHHHHHHHHh---cCCcEEEEEccCCCccccccccccCCCCCCCCcEEEEeeCChHHHh
Q 036236 170 LFDDS----WK-----SKSVEEKAVDIFRSL---REKRFVLLLDDIWERVDLTKVGVPLPGPQNTTSKVVFTTRSIDVCG 237 (557)
Q Consensus 170 ~~~~~----~~-----~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~s~iliTtR~~~v~~ 237 (557)
..... .. ..+.++....+.+.| .++|+||||||||+...|+.+ + .+ |+||||||+..++.
T Consensus 208 ~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f----~---pG-SRILVTTRd~~Va~ 279 (1221)
T 1vt4_I 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF----N---LS-CKILLTTRFKQVTD 279 (1221)
T ss_dssp HHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH----H---SS-CCEEEECSCSHHHH
T ss_pred hcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh----C---CC-eEEEEeccChHHHH
Confidence 21100 00 112344556666655 679999999999997777654 2 34 99999999999876
Q ss_pred cccCCCceecC------CCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHHHHHhccC-CCHHHHHH
Q 036236 238 SMESHRKFPVA------CLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTIGRAMACK-RTAEEWRH 310 (557)
Q Consensus 238 ~~~~~~~~~l~------~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~-~~~~~w~~ 310 (557)
.+.....|.++ +|+.+||++||.+.++... . ++..++ |+|+||||+++|+.|+.+ .+...|..
T Consensus 280 ~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~~----e---eL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~ 349 (1221)
T 1vt4_I 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP----Q---DLPREV---LTTNPRRLSIIAESIRDGLATWDNWKH 349 (1221)
T ss_dssp HHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCCT----T---THHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHH
T ss_pred hcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCCH----H---HHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhc
Confidence 54444456676 9999999999999864321 1 233333 999999999999999886 36778865
Q ss_pred HHHHHHhcccccCCchhhHhhhHhhhhccCCCcch-hHHHhhhccCCCCcccCHHHHHHHHHhcCCcccccchhHHHHHH
Q 036236 311 AVEVLRRSASEFAGLGEKVYSLLKFSYDSLQNETI-KSCFLYCCLYPEDYGILKWDLIDCWIGEGFLEQSDRLSAEYQGY 389 (557)
Q Consensus 311 ~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~-k~~~l~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~ 389 (557)
. ....+..+|.+||+.||+ +. |.||++||+||+++.|+.+.++.+|+++| ++.+.
T Consensus 350 ~-------------~~~~I~aaLelSYd~Lp~-eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eedAe 405 (1221)
T 1vt4_I 350 V-------------NCDKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSDVM 405 (1221)
T ss_dssp C-------------SCHHHHHHHHHHHHHSCT-THHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHHHH
T ss_pred C-------------ChhHHHHHHHHHHHhCCH-HHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HHHHH
Confidence 2 125899999999999999 78 99999999999999999999999998887 13477
Q ss_pred HHHHHHHHhcccccc-CCCcEEeCHHHHHHH
Q 036236 390 YIVGTLVQACLLEEL-EDDKVKMHDVIRDMA 419 (557)
Q Consensus 390 ~~l~~L~~~sll~~~-~~~~~~mHdlv~~~a 419 (557)
.+|++|+++||++.. ...+|+|||++++++
T Consensus 406 ~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 889999999999976 457899999999865
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.1e-39 Score=378.12 Aligned_cols=314 Identities=21% Similarity=0.250 Sum_probs=252.9
Q ss_pred CCCCcccchhHHHHHHHHHHhc-cCCeeEEEEEcCCCCcHHHHHHHHHhhccc-CCCCcceEEEEEeCCcc--CHHHHHH
Q 036236 87 PTEPTIVGLQSQLEQVWRCLVV-EESVGIIGLYGMGGVGKTTLLTHINNKFLE-NPINFDCVIWVVVSKDL--RLEKIQE 162 (557)
Q Consensus 87 ~~~~~~vGr~~~~~~l~~~L~~-~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~-~~~~f~~~~wv~~~~~~--~~~~~~~ 162 (557)
+..+.||||++++++|.++|.. ++..++|+|+||||+||||||+++|++... ...+++.++|+++++.. .....+.
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 200 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQ 200 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHH
T ss_pred CCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHH
Confidence 3456799999999999999963 357899999999999999999999988522 23356789999998854 3445567
Q ss_pred HHHHHhCCCCC--CCCCCCHHHHHHHHHHHhcCC--cEEEEEccCCCccccccccccCCCCCCCCcEEEEeeCChHHHhc
Q 036236 163 DIGKKIGLFDD--SWKSKSVEEKAVDIFRSLREK--RFVLLLDDIWERVDLTKVGVPLPGPQNTTSKVVFTTRSIDVCGS 238 (557)
Q Consensus 163 ~i~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~k--~~LlVlDdv~~~~~~~~l~~~l~~~~~~~s~iliTtR~~~v~~~ 238 (557)
.++..+..... .....+.++....++..+.++ |+||||||||+...+..+ ..+ ++||||||++.++..
T Consensus 201 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~-~~ilvTtR~~~~~~~ 272 (1249)
T 3sfz_A 201 NLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQ-CQILLTTRDKSVTDS 272 (1249)
T ss_dssp HHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSS-CEEEEEESSTTTTTT
T ss_pred HHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCC-CEEEEEcCCHHHHHh
Confidence 77777765432 123456788888899999887 999999999988766654 344 999999999988744
Q ss_pred -ccCCCceecCC-CCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHHHHHhccCCCHHHHHHHHHHHH
Q 036236 239 -MESHRKFPVAC-LSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTIGRAMACKRTAEEWRHAVEVLR 316 (557)
Q Consensus 239 -~~~~~~~~l~~-L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~~~~~~w~~~l~~l~ 316 (557)
......+++.+ |+++||++||...++... +...+.+++|+++|+|+||||+++|+.|+.+. ..|..+++.+.
T Consensus 273 ~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~ 346 (1249)
T 3sfz_A 273 VMGPKHVVPVESGLGREKGLEILSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQ 346 (1249)
T ss_dssp CCSCBCCEECCSSCCHHHHHHHHHHHHTSCS----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHH
T ss_pred hcCCceEEEecCCCCHHHHHHHHHHhhCCCh----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHh
Confidence 45667899996 999999999999886433 33345789999999999999999999998753 46999998887
Q ss_pred hccccc-----CCchhhHhhhHhhhhccCCCcchhHHHhhhccCCCCcccCHHHHHHHHHhcCCcccccchhHHHHHHHH
Q 036236 317 RSASEF-----AGLGEKVYSLLKFSYDSLQNETIKSCFLYCCLYPEDYGILKWDLIDCWIGEGFLEQSDRLSAEYQGYYI 391 (557)
Q Consensus 317 ~~~~~~-----~~~~~~i~~~l~~sy~~L~~~~~k~~~l~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~ 391 (557)
...+.. ....+.+..++.+||+.|++ ++|.||+|||+||+++.|++..++.+|.++ ++.++.+
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~~~~~~~ 414 (1249)
T 3sfz_A 347 NKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCVLWDLE-----------TEEVEDI 414 (1249)
T ss_dssp SCCCCCSSCTTCTTHHHHHHHHHHHHHTSCT-TTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------HHHHHHH
T ss_pred hhhhhhcccccccchHHHHHHHHHHHHhCCH-HHHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------HHHHHHH
Confidence 654321 11124799999999999999 899999999999999999999999999543 3567888
Q ss_pred HHHHHHhccccccCCC---cEEeCHHHHHHHHHHhhhh
Q 036236 392 VGTLVQACLLEELEDD---KVKMHDVIRDMALWITSEI 426 (557)
Q Consensus 392 l~~L~~~sll~~~~~~---~~~mHdlv~~~a~~~~~~~ 426 (557)
+++|+++||++....+ +|+||++||+|++..+.++
T Consensus 415 l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 415 LQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 9999999999976433 4999999999999887653
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=8.9e-37 Score=329.04 Aligned_cols=308 Identities=20% Similarity=0.253 Sum_probs=236.1
Q ss_pred CCCCcccchhHHHHHHHHHHhc-cCCeeEEEEEcCCCCcHHHHHHHHHhhcccC-CCCc-ceEEEEEeCCccCHHHHHH-
Q 036236 87 PTEPTIVGLQSQLEQVWRCLVV-EESVGIIGLYGMGGVGKTTLLTHINNKFLEN-PINF-DCVIWVVVSKDLRLEKIQE- 162 (557)
Q Consensus 87 ~~~~~~vGr~~~~~~l~~~L~~-~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~-~~~f-~~~~wv~~~~~~~~~~~~~- 162 (557)
+..+.||||+.++++|.++|.. .+..++|+|+||||+||||||.+++++. .. ..+| +.++|++++... ...++.
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~~~~f~~~v~wv~~~~~~-~~~~~~~ 198 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDH-SLLEGCFPGGVHWVSVGKQD-KSGLLMK 198 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCH-HHHHHHCTTCEEEEEEESCC-HHHHHHH
T ss_pred CCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhch-hHHHhhCCCceEEEECCCCc-hHHHHHH
Confidence 3456799999999999999974 2467899999999999999999999875 22 3567 589999998752 333333
Q ss_pred --HHHHHhCCCC--CCCCCCCHHHHHHHHHHHhcC--CcEEEEEccCCCccccccccccCCCCCCCCcEEEEeeCChHHH
Q 036236 163 --DIGKKIGLFD--DSWKSKSVEEKAVDIFRSLRE--KRFVLLLDDIWERVDLTKVGVPLPGPQNTTSKVVFTTRSIDVC 236 (557)
Q Consensus 163 --~i~~~l~~~~--~~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~s~iliTtR~~~v~ 236 (557)
.++..++... ......+.+.....+...+.+ +++||||||+|+...+..+ ..+ ++||||||+..++
T Consensus 199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~-~~ilvTsR~~~~~ 270 (591)
T 1z6t_A 199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQ-CQILLTTRDKSVT 270 (591)
T ss_dssp HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSS-CEEEEEESCGGGG
T ss_pred HHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCC-CeEEEECCCcHHH
Confidence 3444554211 122345667778888888876 7899999999986655432 234 9999999998877
Q ss_pred hcccCCCceec---CCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHHHHHhccCCCHHHHHHHHH
Q 036236 237 GSMESHRKFPV---ACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTIGRAMACKRTAEEWRHAVE 313 (557)
Q Consensus 237 ~~~~~~~~~~l---~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~~~~~~w~~~l~ 313 (557)
..+. ...+++ ++|+.+|+++||...++... ....+.+.+|+++|+|+||||..+|+.++... ..|..+++
T Consensus 271 ~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~ 343 (591)
T 1z6t_A 271 DSVM-GPKYVVPVESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLK 343 (591)
T ss_dssp TTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHH
T ss_pred HhcC-CCceEeecCCCCCHHHHHHHHHHHhCCCc----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHH
Confidence 6543 234444 58999999999999987532 12235788999999999999999999998743 36998888
Q ss_pred HHHhcccc-----cCCchhhHhhhHhhhhccCCCcchhHHHhhhccCCCCcccCHHHHHHHHHhcCCcccccchhHHHHH
Q 036236 314 VLRRSASE-----FAGLGEKVYSLLKFSYDSLQNETIKSCFLYCCLYPEDYGILKWDLIDCWIGEGFLEQSDRLSAEYQG 388 (557)
Q Consensus 314 ~l~~~~~~-----~~~~~~~i~~~l~~sy~~L~~~~~k~~~l~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~ 388 (557)
.+...... .......+..++..||+.||+ +.|.||++||+||+++.|+...++.+|.++ .+.+
T Consensus 344 ~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~-~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-----------~~~~ 411 (591)
T 1z6t_A 344 QLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCILWDME-----------TEEV 411 (591)
T ss_dssp HHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCT-TTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------HHHH
T ss_pred HHHHhHHHHhhhccccchHHHHHHHHHHHHhCCH-HHHHHHHHccccCCCCccCHHHHHHHhccC-----------HHHH
Confidence 88765322 111235789999999999999 899999999999999999999999999542 2356
Q ss_pred HHHHHHHHHhccccccC---CCcEEeCHHHHHHHHHHh
Q 036236 389 YYIVGTLVQACLLEELE---DDKVKMHDVIRDMALWIT 423 (557)
Q Consensus 389 ~~~l~~L~~~sll~~~~---~~~~~mHdlv~~~a~~~~ 423 (557)
..++++|+++||++... ..+|+||+++|++++...
T Consensus 412 ~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 412 EDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 77899999999998642 347999999999999774
No 5
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.77 E-value=2e-17 Score=165.74 Aligned_cols=292 Identities=14% Similarity=0.100 Sum_probs=177.0
Q ss_pred CCcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCcc------CHHHHHH
Q 036236 89 EPTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDL------RLEKIQE 162 (557)
Q Consensus 89 ~~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~------~~~~~~~ 162 (557)
++.|+||++++++|.+++. .+ +++.|+|++|+|||||++++++.. . .+|+.+.... +...++.
T Consensus 11 ~~~~~gR~~el~~L~~~l~-~~--~~v~i~G~~G~GKT~Ll~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~ 79 (350)
T 2qen_A 11 REDIFDREEESRKLEESLE-NY--PLTLLLGIRRVGKSSLLRAFLNER---P-----GILIDCRELYAERGHITREELIK 79 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHH-HC--SEEEEECCTTSSHHHHHHHHHHHS---S-----EEEEEHHHHHHTTTCBCHHHHHH
T ss_pred hHhcCChHHHHHHHHHHHh-cC--CeEEEECCCcCCHHHHHHHHHHHc---C-----cEEEEeecccccccCCCHHHHHH
Confidence 3579999999999999987 32 799999999999999999999875 1 6777765432 5566666
Q ss_pred HHHHHhCCC--------------C--CCCCCCCHHHHHHHHHHHhcC-CcEEEEEccCCCccc--------cccccccCC
Q 036236 163 DIGKKIGLF--------------D--DSWKSKSVEEKAVDIFRSLRE-KRFVLLLDDIWERVD--------LTKVGVPLP 217 (557)
Q Consensus 163 ~i~~~l~~~--------------~--~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~~--------~~~l~~~l~ 217 (557)
.+...+... . .........+....+.+.... ++++|||||++.... +......+.
T Consensus 80 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~ 159 (350)
T 2qen_A 80 ELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAY 159 (350)
T ss_dssp HHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHH
Confidence 666655320 0 000123455566666555543 499999999965332 111111111
Q ss_pred CCCCCCcEEEEeeCChHHHhc----------c-cC-CCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHh
Q 036236 218 GPQNTTSKVVFTTRSIDVCGS----------M-ES-HRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVAREC 285 (557)
Q Consensus 218 ~~~~~~s~iliTtR~~~v~~~----------~-~~-~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~ 285 (557)
....+ .++|+|++....... + +. ...+.+.+|+.+|+.+++...+........ .+.+..|++.|
T Consensus 160 ~~~~~-~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~---~~~~~~i~~~t 235 (350)
T 2qen_A 160 DSLPN-LKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVP---ENEIEEAVELL 235 (350)
T ss_dssp HHCTT-EEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHH
T ss_pred HhcCC-eEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHh
Confidence 11123 789999887543211 1 11 236899999999999999876533221111 35678999999
Q ss_pred CCCchHHHHHHHHhccCCCHHHHHHHHHHHHhcccccCCchhhHhhhHhhhhccC---CCcchhHHHhhhccCCCCcccC
Q 036236 286 DGLPLALLTIGRAMACKRTAEEWRHAVEVLRRSASEFAGLGEKVYSLLKFSYDSL---QNETIKSCFLYCCLYPEDYGIL 362 (557)
Q Consensus 286 ~G~PLai~~~~~~l~~~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L---~~~~~k~~~l~~~~fp~~~~i~ 362 (557)
+|+|+++..++..+....+...+.. .+.. .+...+.-.+..+ ++ ..+..+..++. . ..+
T Consensus 236 gG~P~~l~~~~~~~~~~~~~~~~~~---~~~~----------~~~~~~~~~l~~l~~~~~-~~~~~l~~la~--g--~~~ 297 (350)
T 2qen_A 236 DGIPGWLVVFGVEYLRNGDFGRAMK---RTLE----------VAKGLIMGELEELRRRSP-RYVDILRAIAL--G--YNR 297 (350)
T ss_dssp TTCHHHHHHHHHHHHHHCCHHHHHH---HHHH----------HHHHHHHHHHHHHHHHCH-HHHHHHHHHHT--T--CCS
T ss_pred CCCHHHHHHHHHHHhccccHhHHHH---HHHH----------HHHHHHHHHHHHHHhCCh-hHHHHHHHHHh--C--CCC
Confidence 9999999998875432122222211 1111 1111111111122 45 67888888887 2 134
Q ss_pred HHHHHHHHHhcCCcccccchhHHHHHHHHHHHHHHhccccccCCCcEE-eCHHHHHHHH
Q 036236 363 KWDLIDCWIGEGFLEQSDRLSAEYQGYYIVGTLVQACLLEELEDDKVK-MHDVIRDMAL 420 (557)
Q Consensus 363 ~~~li~~w~a~g~i~~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~-mHdlv~~~a~ 420 (557)
...+........ - +. .......+++.|.+.++|...+ +.|. .|++++.+.+
T Consensus 298 ~~~l~~~~~~~~-~----~~-~~~~~~~~l~~L~~~gli~~~~-~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 298 WSLIRDYLAVKG-T----KI-PEPRLYALLENLKKMNWIVEED-NTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHHHHHTT-C----CC-CHHHHHHHHHHHHHTTSEEEET-TEEEESSHHHHHHHT
T ss_pred HHHHHHHHHHHh-C----CC-CHHHHHHHHHHHHhCCCEEecC-CEEEEecHHHHHHHc
Confidence 444444332211 0 11 1234567899999999998753 4454 5888887753
No 6
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.74 E-value=1.3e-16 Score=160.29 Aligned_cols=290 Identities=13% Similarity=0.124 Sum_probs=169.7
Q ss_pred CCcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCc-----cCHHHHHHH
Q 036236 89 EPTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKD-----LRLEKIQED 163 (557)
Q Consensus 89 ~~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~~ 163 (557)
...|+||+++++.|.+ +. . +++.|+|++|+|||+|++++++.. .. ..+|+.+... .+...++..
T Consensus 12 ~~~~~gR~~el~~L~~-l~-~---~~v~i~G~~G~GKT~L~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~ 80 (357)
T 2fna_A 12 RKDFFDREKEIEKLKG-LR-A---PITLVLGLRRTGKSSIIKIGINEL---NL---PYIYLDLRKFEERNYISYKDFLLE 80 (357)
T ss_dssp GGGSCCCHHHHHHHHH-TC-S---SEEEEEESTTSSHHHHHHHHHHHH---TC---CEEEEEGGGGTTCSCCCHHHHHHH
T ss_pred HHHhcChHHHHHHHHH-hc-C---CcEEEECCCCCCHHHHHHHHHHhc---CC---CEEEEEchhhccccCCCHHHHHHH
Confidence 3579999999999999 76 2 699999999999999999999886 21 2578887643 234444444
Q ss_pred HHHHhC------------------CCCCC----C-----CCCCHHHHHHHHHHHhcCCcEEEEEccCCCcc-----cccc
Q 036236 164 IGKKIG------------------LFDDS----W-----KSKSVEEKAVDIFRSLREKRFVLLLDDIWERV-----DLTK 211 (557)
Q Consensus 164 i~~~l~------------------~~~~~----~-----~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----~~~~ 211 (557)
+...+. ...+. . ...........+.+... ++++|||||++... ++..
T Consensus 81 l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~ 159 (357)
T 2fna_A 81 LQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLP 159 (357)
T ss_dssp HHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHH
T ss_pred HHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHH
Confidence 444331 00000 0 01233444444433222 49999999995422 2222
Q ss_pred ccccCCCCCCCCcEEEEeeCChHHHhc----------cc-C-CCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHH
Q 036236 212 VGVPLPGPQNTTSKVVFTTRSIDVCGS----------ME-S-HRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQ 279 (557)
Q Consensus 212 l~~~l~~~~~~~s~iliTtR~~~v~~~----------~~-~-~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~ 279 (557)
+...+.....+ .++|+|++....... +. . ...+.+.+|+.+|+.+++...+....... .. . .
T Consensus 160 ~l~~~~~~~~~-~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~-~~---~-~ 233 (357)
T 2fna_A 160 ALAYAYDNLKR-IKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDF-KD---Y-E 233 (357)
T ss_dssp HHHHHHHHCTT-EEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCC-CC---H-H
T ss_pred HHHHHHHcCCC-eEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCC-Cc---H-H
Confidence 22222111123 789999997653221 11 1 24689999999999999987653211111 12 1 7
Q ss_pred HHHHHhCCCchHHHHHHHHhccCCCHHHHHH-HHHHHHhcccccCCchhhHhhhHh-hhh--ccCCCcchhHHHhhhccC
Q 036236 280 TVARECDGLPLALLTIGRAMACKRTAEEWRH-AVEVLRRSASEFAGLGEKVYSLLK-FSY--DSLQNETIKSCFLYCCLY 355 (557)
Q Consensus 280 ~i~~~~~G~PLai~~~~~~l~~~~~~~~w~~-~l~~l~~~~~~~~~~~~~i~~~l~-~sy--~~L~~~~~k~~~l~~~~f 355 (557)
.|++.|+|+|+++..++..+....+...|.. ..+... ..+...+. +.+ ..+++ ..+..+..+|.
T Consensus 234 ~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~l~~-~~~~~l~~la~- 301 (357)
T 2fna_A 234 VVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAK----------KLILKEFENFLHGREIARK-RYLNIMRTLSK- 301 (357)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH----------HHHHHHHHHHHTTCGGGHH-HHHHHHHHHTT-
T ss_pred HHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHH----------HHHHHHHHHHhhccccccH-HHHHHHHHHHc-
Confidence 8999999999999999877643333333321 111110 01111111 111 15666 77888888887
Q ss_pred CCCcccCHHHHHHHHH-hcCCcccccchhHHHHHHHHHHHHHHhccccccCCCcEE-eCHHHHHHH
Q 036236 356 PEDYGILKWDLIDCWI-GEGFLEQSDRLSAEYQGYYIVGTLVQACLLEELEDDKVK-MHDVIRDMA 419 (557)
Q Consensus 356 p~~~~i~~~~li~~w~-a~g~i~~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~-mHdlv~~~a 419 (557)
+. +...+....- ..|. .........+++.|.+.++|.... ..|. .|++++++.
T Consensus 302 --g~--~~~~l~~~~~~~~g~------~~~~~~~~~~L~~L~~~gli~~~~-~~y~f~~~~~~~~l 356 (357)
T 2fna_A 302 --CG--KWSDVKRALELEEGI------EISDSEIYNYLTQLTKHSWIIKEG-EKYCPSEPLISLAF 356 (357)
T ss_dssp --CB--CHHHHHHHHHHHHCS------CCCHHHHHHHHHHHHHTTSEEESS-SCEEESSHHHHHHT
T ss_pred --CC--CHHHHHHHHHHhcCC------CCCHHHHHHHHHHHHhCCCEEecC-CEEEecCHHHHHhh
Confidence 21 3344332210 1121 011234567799999999998764 4555 688888763
No 7
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.71 E-value=9.3e-17 Score=164.76 Aligned_cols=306 Identities=11% Similarity=0.029 Sum_probs=181.1
Q ss_pred CcccchhHHHHHHHHHH-hc---c--CCeeEEEE--EcCCCCcHHHHHHHHHhhcccC--CCCcc-eEEEEEeCCccCHH
Q 036236 90 PTIVGLQSQLEQVWRCL-VV---E--ESVGIIGL--YGMGGVGKTTLLTHINNKFLEN--PINFD-CVIWVVVSKDLRLE 158 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L-~~---~--~~~~vv~I--~G~~GiGKTtLa~~v~~~~~~~--~~~f~-~~~wv~~~~~~~~~ 158 (557)
..|+||++++++|.+++ .. . .....+.| +|++|+||||||+.+++..... ...++ .++|+.+....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 57999999999999998 42 2 34567777 9999999999999999876210 00122 46788877777888
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc--CCcEEEEEccCCCcc--------ccccccccCCCCC--C--CCc
Q 036236 159 KIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSLR--EKRFVLLLDDIWERV--------DLTKVGVPLPGPQ--N--TTS 224 (557)
Q Consensus 159 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~--------~~~~l~~~l~~~~--~--~~s 224 (557)
.++..++.+++...+. ...+..+....+.+.+. +++++|||||++... .+..+...+.... . ...
T Consensus 102 ~~~~~l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQV-RGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHTCCCCC-TTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHhCCCCCC-CCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 9999999999764321 22345556666666664 679999999996532 1222212221111 1 225
Q ss_pred EEEEeeCChHHHhccc---------CCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhC------CCc
Q 036236 225 KVVFTTRSIDVCGSME---------SHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECD------GLP 289 (557)
Q Consensus 225 ~iliTtR~~~v~~~~~---------~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~------G~P 289 (557)
.+|+||+...+...+. ....+.+++|+.++++++|...+...... ..--.+....|++.|+ |+|
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~G~p 259 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRD-TVWEPRHLELISDVYGEDKGGDGSA 259 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCT-TSCCHHHHHHHHHHHCGGGTSCCCH
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCC-CCCChHHHHHHHHHHHHhccCCCcH
Confidence 6787887654321110 11239999999999999997664311100 0111357889999999 999
Q ss_pred hHHHHHHHHhc-----cC---CCHHHHHHHHHHHHhcccccCCchhhHhhhHhhhhccCCCcchhHHHhhhccCC--CCc
Q 036236 290 LALLTIGRAMA-----CK---RTAEEWRHAVEVLRRSASEFAGLGEKVYSLLKFSYDSLQNETIKSCFLYCCLYP--EDY 359 (557)
Q Consensus 290 Lai~~~~~~l~-----~~---~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~~~l~~~~fp--~~~ 359 (557)
..+..+..... .. -+...+..+...... ...+..++..||+ +.+.++..++.+. .+.
T Consensus 260 ~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------------~~~~~~~l~~l~~-~~~~~l~aia~l~~~~~~ 326 (412)
T 1w5s_A 260 RRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------------ASIQTHELEALSI-HELIILRLIAEATLGGME 326 (412)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------------CCSSSSSCH-HHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------------cchHHHHHHcCCH-HHHHHHHHHHHHHhcCCC
Confidence 76655543221 01 123333332221100 2334556778888 7888888888653 233
Q ss_pred ccCHHHHHHHHH--h---cCCcccccchhHHHHHHHHHHHHHHhcccccc-----CCCcEEeCHHH
Q 036236 360 GILKWDLIDCWI--G---EGFLEQSDRLSAEYQGYYIVGTLVQACLLEEL-----EDDKVKMHDVI 415 (557)
Q Consensus 360 ~i~~~~li~~w~--a---~g~i~~~~~~~~~~~~~~~l~~L~~~sll~~~-----~~~~~~mHdlv 415 (557)
.+....+...+. + .|. . .........+++.|...+||... ..++|++|.+.
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 327 WINAGLLRQRYEDASLTMYNV-K----PRGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp SBCHHHHHHHHHHHHHHHSCC-C----CCCHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred CccHHHHHHHHHHHHHhhcCC-C----CCCHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 455555544432 1 121 0 11123455679999999999764 23345555444
No 8
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.54 E-value=2.7e-13 Score=137.61 Aligned_cols=291 Identities=14% Similarity=0.069 Sum_probs=177.2
Q ss_pred CcccchhHHHHHHHHHHhc---cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCC---CCcceEEEEEeCCccCHHHHHHH
Q 036236 90 PTIVGLQSQLEQVWRCLVV---EESVGIIGLYGMGGVGKTTLLTHINNKFLENP---INFDCVIWVVVSKDLRLEKIQED 163 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~---~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~ 163 (557)
+.|+||+++++++..++.. .+..+.+.|+|++|+||||+|+.+++...... ..-...+|+.+....+...++..
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 6799999999999999863 34667899999999999999999998762110 01234678888888888899999
Q ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHHhc--CCcEEEEEccCCCccc----cccc---cccCCCCC-CCCcEEEEeeCCh
Q 036236 164 IGKKIGLFDDSWKSKSVEEKAVDIFRSLR--EKRFVLLLDDIWERVD----LTKV---GVPLPGPQ-NTTSKVVFTTRSI 233 (557)
Q Consensus 164 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~----~~~l---~~~l~~~~-~~~s~iliTtR~~ 233 (557)
++.+++..... ...+..+....+...+. +++.+|||||++.... .+.+ ........ ..+..+|+||+..
T Consensus 99 l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 99 IAEAVGVRVPF-TGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSL 177 (387)
T ss_dssp HHHHHSCCCCS-SCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCS
T ss_pred HHHHhCCCCCC-CCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCC
Confidence 99999764321 33445666667777763 4688999999975321 1112 11111111 2226778787765
Q ss_pred HH--------HhcccCCCceecCCCCHHHHHHHHHHHhCC--CccCCCccHHHHHHHHHHHhC---CCchHH-HHHHHHh
Q 036236 234 DV--------CGSMESHRKFPVACLSEEDAWELFREKVGQ--ETLESHHDIVELAQTVARECD---GLPLAL-LTIGRAM 299 (557)
Q Consensus 234 ~v--------~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~--~~~~~~~~~~~~~~~i~~~~~---G~PLai-~~~~~~l 299 (557)
.. ...+ ....+.+++++.++..+++...+.. ......+ +..+.+++.++ |.|..+ ..+..+.
T Consensus 178 ~~~~~l~~~l~~r~-~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~a~ 253 (387)
T 2v1u_A 178 GFVENLEPRVKSSL-GEVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDLLRVAG 253 (387)
T ss_dssp TTSSSSCHHHHTTT-TSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred chHhhhCHHHHhcC-CCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 22 2221 1247899999999999999987532 1111222 35677888888 999433 3322221
Q ss_pred c-----c--CCCHHHHHHHHHHHHhcccccCCchhhHhhhHhhhhccCCCcchhHHHhhhc-cCCCCcccCHHHHHHHHH
Q 036236 300 A-----C--KRTAEEWRHAVEVLRRSASEFAGLGEKVYSLLKFSYDSLQNETIKSCFLYCC-LYPEDYGILKWDLIDCWI 371 (557)
Q Consensus 300 ~-----~--~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~~~l~~~-~fp~~~~i~~~~li~~w~ 371 (557)
. + .-+.+.+..++..... ..+.-++..|++ +.+..+..++ ++...-.+....+.+...
T Consensus 254 ~~a~~~~~~~i~~~~v~~a~~~~~~-------------~~~~~~~~~l~~-~~~~~l~a~~~~~~~~~~~~~~~~~~~~~ 319 (387)
T 2v1u_A 254 EIAERRREERVRREHVYSARAEIER-------------DRVSEVVRTLPL-HAKLVLLSIMMLEDGGRPASTGEIYERYK 319 (387)
T ss_dssp HHHHHTTCSCBCHHHHHHHHHHHHH-------------HHHHHHHHSSCH-HHHHHHHHHHHHSSSSCCEEHHHHHHHHH
T ss_pred HHHHHcCCCCcCHHHHHHHHHHHhh-------------chHHHHHHcCCH-HHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence 1 1 1356666665554321 234456777877 5555555454 443223454454433321
Q ss_pred h----cCCcccccchhHHHHHHHHHHHHHHhcccccc
Q 036236 372 G----EGFLEQSDRLSAEYQGYYIVGTLVQACLLEEL 404 (557)
Q Consensus 372 a----~g~i~~~~~~~~~~~~~~~l~~L~~~sll~~~ 404 (557)
. .| ..+ ........+++.|...++++..
T Consensus 320 ~~~~~~~-~~~----~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 320 ELTSTLG-LEH----VTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHHHTT-CCC----CCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHhcC-CCC----CCHHHHHHHHHHHHhCCCeEEE
Confidence 1 22 111 2234566789999999999863
No 9
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.53 E-value=3.8e-13 Score=136.42 Aligned_cols=289 Identities=15% Similarity=-0.011 Sum_probs=175.7
Q ss_pred CcccchhHHHHHHHHHHhc---cCCeeEEEEEcCCCCcHHHHHHHHHhhcccC----CCC-cceEEEEEeCCcc-CHHHH
Q 036236 90 PTIVGLQSQLEQVWRCLVV---EESVGIIGLYGMGGVGKTTLLTHINNKFLEN----PIN-FDCVIWVVVSKDL-RLEKI 160 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~---~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~----~~~-f~~~~wv~~~~~~-~~~~~ 160 (557)
..|+||+++++++.+++.. .+..+.+.|+|++|+|||+||+.+++..... ... ...++|+.+.... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 5799999999999988763 3456799999999999999999999875211 011 3357788877766 78888
Q ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCccc--cccc-cccCCCCCCCCcEEEEeeCChHH--
Q 036236 161 QEDIGKKIGLFDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWERVD--LTKV-GVPLPGPQNTTSKVVFTTRSIDV-- 235 (557)
Q Consensus 161 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--~~~l-~~~l~~~~~~~s~iliTtR~~~v-- 235 (557)
+..++..+..........+.......+.+.+..++.+|||||++.... .... ...+.....+ ..||+||+....
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~-~~iI~~t~~~~~~~ 178 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDAN-ISVIMISNDINVRD 178 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSC-EEEEEECSSTTTTT
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcc-eEEEEEECCCchHh
Confidence 888888873221112333456667778888887777999999964321 1111 1111111133 788888886532
Q ss_pred ------HhcccCCCceecCCCCHHHHHHHHHHHhCC--CccCCCccHHHHHHHHHHHhC---CCch-HHHHHHHHh--c-
Q 036236 236 ------CGSMESHRKFPVACLSEEDAWELFREKVGQ--ETLESHHDIVELAQTVARECD---GLPL-ALLTIGRAM--A- 300 (557)
Q Consensus 236 ------~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~--~~~~~~~~~~~~~~~i~~~~~---G~PL-ai~~~~~~l--~- 300 (557)
...+ ...+.+++++.++..+++...+.. .....++ +..+.+++.++ |.|. ++..+-.+. .
T Consensus 179 ~l~~~l~sr~--~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~ 253 (384)
T 2qby_B 179 YMEPRVLSSL--GPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQLAS 253 (384)
T ss_dssp TSCHHHHHTC--CCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred hhCHHHHhcC--CCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc
Confidence 1221 238999999999999999987531 1111222 45677888888 9887 433333222 2
Q ss_pred --cCCCHHHHHHHHHHHHhcccccCCchhhHhhhHhhhhccCCCcchhHHHhhhccCCCCcccCHHHHHHHHHhcCCccc
Q 036236 301 --CKRTAEEWRHAVEVLRRSASEFAGLGEKVYSLLKFSYDSLQNETIKSCFLYCCLYPEDYGILKWDLIDCWIGEGFLEQ 378 (557)
Q Consensus 301 --~~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~~~l~~~~fp~~~~i~~~~li~~w~a~g~i~~ 378 (557)
..-+.+.+..+++.... ..+..++..|++ +.+..+..++....+-.+. .......-..| ..
T Consensus 254 ~~~~i~~~~v~~~~~~~~~-------------~~~~~~~~~l~~-~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~- 316 (384)
T 2qby_B 254 GGGIIRKEHVDKAIVDYEQ-------------ERLIEAVKALPF-HYKLALRSLIESEDVMSAH-KMYTDLCNKFK-QK- 316 (384)
T ss_dssp SSSCCCHHHHHHHHHHHHH-------------HHHHHHHHSSCH-HHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CC-
T ss_pred CCCccCHHHHHHHHHHHhc-------------chHHHHHHcCCH-HHHHHHHHHHHhcccChHH-HHHHHHHHHcC-CC-
Confidence 12466777766654321 334556677876 5666655555511101111 11111111122 11
Q ss_pred ccchhHHHHHHHHHHHHHHhcccccc
Q 036236 379 SDRLSAEYQGYYIVGTLVQACLLEEL 404 (557)
Q Consensus 379 ~~~~~~~~~~~~~l~~L~~~sll~~~ 404 (557)
.........+++.|...++++..
T Consensus 317 ---~~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 317 ---PLSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp ---CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred ---CCCHHHHHHHHHHHHhCCCEEEE
Confidence 11234556779999999999863
No 10
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.48 E-value=3.1e-13 Score=137.05 Aligned_cols=293 Identities=14% Similarity=0.102 Sum_probs=170.8
Q ss_pred CcccchhHHHHHHHHHHhc---cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHH
Q 036236 90 PTIVGLQSQLEQVWRCLVV---EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGK 166 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~---~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 166 (557)
..|+||+++++.+.+++.. .+....+.|+|++|+||||||+.+++........-..++|+.+....+...++..++.
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~ 99 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLE 99 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTT
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999998873 3456789999999999999999999876211100235678887776677888888888
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHHhc--CCcEEEEEccCCCcc------ccccccccCCCCCCCCcEEEEeeCChHHHhc
Q 036236 167 KIGLFDDSWKSKSVEEKAVDIFRSLR--EKRFVLLLDDIWERV------DLTKVGVPLPGPQNTTSKVVFTTRSIDVCGS 238 (557)
Q Consensus 167 ~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~------~~~~l~~~l~~~~~~~s~iliTtR~~~v~~~ 238 (557)
.++..... ...+..+....+.+.+. +++.+||||+++... .+..+...+......+..+|+||+.......
T Consensus 100 ~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~ 178 (386)
T 2qby_A 100 SLDVKVPF-TGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDL 178 (386)
T ss_dssp TTSCCCCS-SSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGG
T ss_pred HhCCCCCC-CCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhh
Confidence 87654321 23345555666666664 358999999996422 1222221121111222667888876543222
Q ss_pred cc-------CCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhC---CCchHHHHHHHHh-c-----c-
Q 036236 239 ME-------SHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECD---GLPLALLTIGRAM-A-----C- 301 (557)
Q Consensus 239 ~~-------~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~---G~PLai~~~~~~l-~-----~- 301 (557)
+. ....+.+++++.++..+++...+.... ....-..+..+.+++.++ |.|..+..+.... . .
T Consensus 179 ~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~ 257 (386)
T 2qby_A 179 LDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAF-KPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKD 257 (386)
T ss_dssp CTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHB-CSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhc-cCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCC
Confidence 11 124799999999999999998653111 011112356677788887 9998443332221 1 1
Q ss_pred -CCCHHHHHHHHHHHHhcccccCCchhhHhhhHhhhhccCCCcchhHHHhhhccCCC-C-cccCHHHHHHHHH--h--cC
Q 036236 302 -KRTAEEWRHAVEVLRRSASEFAGLGEKVYSLLKFSYDSLQNETIKSCFLYCCLYPE-D-YGILKWDLIDCWI--G--EG 374 (557)
Q Consensus 302 -~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~~~l~~~~fp~-~-~~i~~~~li~~w~--a--~g 374 (557)
.-+.+.+..++.... ...+.-.+..+++ ..+..+..++.+.+ + -.+....+.+... + .|
T Consensus 258 ~~i~~~~v~~a~~~~~-------------~~~~~~~~~~l~~-~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g 323 (386)
T 2qby_A 258 TKVKEEYVYMAKEEIE-------------RDRVRDIILTLPF-HSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLG 323 (386)
T ss_dssp SSCCHHHHHHHHHHHH-------------HHHHHHHHHTSCH-HHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHT
T ss_pred CccCHHHHHHHHHHHh-------------hchHHHHHHcCCH-HHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcC
Confidence 134555555544332 1234455667776 55555555543211 1 1233333322211 1 12
Q ss_pred CcccccchhHHHHHHHHHHHHHHhccccc
Q 036236 375 FLEQSDRLSAEYQGYYIVGTLVQACLLEE 403 (557)
Q Consensus 375 ~i~~~~~~~~~~~~~~~l~~L~~~sll~~ 403 (557)
+.. ........+++.|...++++.
T Consensus 324 -~~~----~~~~~~~~~l~~L~~~gli~~ 347 (386)
T 2qby_A 324 -VEA----VTQRRVSDIINELDMVGILTA 347 (386)
T ss_dssp -CCC----CCHHHHHHHHHHHHHHTSEEE
T ss_pred -CCC----CCHHHHHHHHHHHHhCCCEEE
Confidence 111 112345567899999999975
No 11
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.47 E-value=6.4e-12 Score=127.55 Aligned_cols=292 Identities=14% Similarity=0.065 Sum_probs=177.1
Q ss_pred CcccchhHHHHHHHHHHhc---cCCee--EEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHH
Q 036236 90 PTIVGLQSQLEQVWRCLVV---EESVG--IIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDI 164 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~---~~~~~--vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 164 (557)
+.++||+.+++++..++.. .+... .+.|+|++|+|||||++.+++... ... -..++++.++...+...+...+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~-~~~-~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYK-DKT-TARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHT-TSC-CCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHh-hhc-CeeEEEEeCccCCCHHHHHHHH
Confidence 5799999999999998873 23334 899999999999999999999872 111 2356778877777888999999
Q ss_pred HHHhCCCCCCCCCCCHHHHHHHHHHHhc--CCcEEEEEccCCCc--cccccccccCCCCCC---CCcEEEEeeCChHHHh
Q 036236 165 GKKIGLFDDSWKSKSVEEKAVDIFRSLR--EKRFVLLLDDIWER--VDLTKVGVPLPGPQN---TTSKVVFTTRSIDVCG 237 (557)
Q Consensus 165 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~---~~s~iliTtR~~~v~~ 237 (557)
+..++..... ...+..+....+...+. +++.+||||+++.. .....+...+..... .+..||++|+......
T Consensus 95 ~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~ 173 (389)
T 1fnn_A 95 ARSLNIPFPR-RGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLN 173 (389)
T ss_dssp HHHTTCCCCS-SCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHH
T ss_pred HHHhCccCCC-CCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHH
Confidence 9988754321 23345556666666554 56889999999653 222333222221111 2267888887764432
Q ss_pred ccc-------CCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHh---------CCCchHHHHHHHHhc-
Q 036236 238 SME-------SHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVAREC---------DGLPLALLTIGRAMA- 300 (557)
Q Consensus 238 ~~~-------~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~---------~G~PLai~~~~~~l~- 300 (557)
.+. ....+.+++++.++..+++...+..... ...--.+..+.+++.+ +|.|..+..+.....
T Consensus 174 ~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~ 252 (389)
T 1fnn_A 174 NLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLA-EGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAY 252 (389)
T ss_dssp TSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBC-TTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHH
T ss_pred HhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcC-CCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHH
Confidence 221 1236999999999999999887642110 0011235778899999 788765544433211
Q ss_pred -----c--CCCHHHHHHHHHHHHhcccccCCchhhHhhhHhhhhccCCCcchhHHHhhhccCC---CCcccCHHHHHHHH
Q 036236 301 -----C--KRTAEEWRHAVEVLRRSASEFAGLGEKVYSLLKFSYDSLQNETIKSCFLYCCLYP---EDYGILKWDLIDCW 370 (557)
Q Consensus 301 -----~--~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~~~l~~~~fp---~~~~i~~~~li~~w 370 (557)
. .-+.+....+..... ...+.-.+..|++ +.+.++..++.+. .+..+....+...+
T Consensus 253 ~a~~~~~~~i~~~~v~~~~~~~~-------------~~~~~~~l~~l~~-~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~ 318 (389)
T 1fnn_A 253 AAQQNGRKHIAPEDVRKSSKEVL-------------FGISEEVLIGLPL-HEKLFLLAIVRSLKISHTPYITFGDAEESY 318 (389)
T ss_dssp HHHHTTCSSCCHHHHHHHHHHHS-------------CCCCHHHHHHSCH-HHHHHHHHHHHHHHHHCSSCEEHHHHHHHH
T ss_pred HHHHhCCCCcCHHHHHHHHHHHh-------------hhhHHHHHHcCCH-HHHHHHHHHHHHHhhccCCCccHHHHHHHH
Confidence 1 123333333332211 1122233556776 6677666666543 22145555555544
Q ss_pred Hh----cCCcccccchhHHHHHHHHHHHHHHhcccccc
Q 036236 371 IG----EGFLEQSDRLSAEYQGYYIVGTLVQACLLEEL 404 (557)
Q Consensus 371 ~a----~g~i~~~~~~~~~~~~~~~l~~L~~~sll~~~ 404 (557)
-. .|... -.......+++.|...++|...
T Consensus 319 ~~~~~~~~~~~-----~~~~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 319 KIVCEEYGERP-----RVHSQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp HHHHHHTTCCC-----CCHHHHHHHHHHHHHTTSSEEE
T ss_pred HHHHHHcCCCC-----CCHHHHHHHHHHHHhCCCeEEe
Confidence 22 12111 1124456789999999999864
No 12
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.44 E-value=2.4e-13 Score=121.67 Aligned_cols=121 Identities=20% Similarity=0.214 Sum_probs=106.6
Q ss_pred EEEcCCCcccCCcccccc-cceEEEccccccccccCCCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCc
Q 036236 434 LVRAGAGLKEAPAVKGWE-NVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIF 512 (557)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~-~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~ 512 (557)
+...+..+..++.+..+. +++.|++++|.+..++....+++|++|++++|. +..+|...+..+++|++|+|++| .++
T Consensus 24 L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~i~ 101 (176)
T 1a9n_A 24 LDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTELILTNN-SLV 101 (176)
T ss_dssp EECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCEEECCSC-CCC
T ss_pred EEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCc-ccccCcchhhcCCCCCEEECCCC-cCC
Confidence 344555666666666666 999999999999988777899999999999998 88898886799999999999999 899
Q ss_pred cCCc--cccCCCCCCeeeccCCCCcccChH----HHhHhhhhhcCCCCCC
Q 036236 513 QLPV--GMSKLGSLELLDISHTFIKELPEE----LKKLLEAIQRAPRPDR 556 (557)
Q Consensus 513 ~lP~--~i~~L~~L~~L~l~~n~l~~lP~~----i~~L~~L~~L~~~~~~ 556 (557)
.+|. .++.+++|++|++++|.+..+|.. ++.+++|++|++++++
T Consensus 102 ~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 102 ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 9998 899999999999999999999986 9999999999998764
No 13
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.39 E-value=3.6e-12 Score=120.27 Aligned_cols=198 Identities=16% Similarity=0.159 Sum_probs=114.7
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhC
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIG 169 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 169 (557)
..++||+..++.+..++......+.+.|+|++|+||||+|+.+++.... ...+.. ..+. .... ...+.....
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~-~~~~~~---~~~~---~~~~-~~~~~~~~~ 94 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC-ETGITA---TPCG---VCDN-CREIEQGRF 94 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHC-TTCSCS---SCCS---CSHH-HHHHHTTCC
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC-CCCCCC---CCCc---ccHH-HHHHhccCC
Confidence 4689999999999999984444568999999999999999999887621 111100 0000 0000 001110000
Q ss_pred CCCC--CCCCCCHHHHHHHHHHHh-----cCCcEEEEEccCCCc--cccccccccCCCCCCCCcEEEEeeCChHHH--hc
Q 036236 170 LFDD--SWKSKSVEEKAVDIFRSL-----REKRFVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTRSIDVC--GS 238 (557)
Q Consensus 170 ~~~~--~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~iliTtR~~~v~--~~ 238 (557)
...- .............+.+.+ .+++.+|||||++.. ..+..+...+.....+ ..+|+||+..... ..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~-~~~i~~t~~~~~~~~~l 173 (250)
T 1njg_A 95 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEH-VKFLLATTDPQKLPVTI 173 (250)
T ss_dssp SSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTT-EEEEEEESCGGGSCHHH
T ss_pred cceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCc-eEEEEEeCChHhCCHHH
Confidence 0000 000000111112222221 346799999999642 3344444444333334 7888888764321 11
Q ss_pred ccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHHHHHh
Q 036236 239 MESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTIGRAM 299 (557)
Q Consensus 239 ~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l 299 (557)
......+.+++++.++..+++...+.......+ .+..+.|++.|+|+|..+..+...+
T Consensus 174 ~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 174 LSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE---PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 122457899999999999999987743321111 3567899999999999987776443
No 14
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.36 E-value=1.6e-12 Score=121.63 Aligned_cols=108 Identities=23% Similarity=0.306 Sum_probs=76.9
Q ss_pred ccccccceEEEccccccccccCC--CCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCccccCCCCC
Q 036236 447 VKGWENVRRLSLMQNQIETLSEV--PTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVGMSKLGSL 524 (557)
Q Consensus 447 ~~~~~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~i~~L~~L 524 (557)
+..+++++.|++++|.+..++.. ..+++|+.|+|++|. +..+|...|..+++|++|+|++| .++.+|..+..+++|
T Consensus 60 ~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L 137 (229)
T 3e6j_A 60 FDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ-LTVLPSAVFDRLVHLKELFMCCN-KLTELPRGIERLTHL 137 (229)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCSCCTTGGGCTTC
T ss_pred hhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc-CCccChhHhCcchhhCeEeccCC-cccccCcccccCCCC
Confidence 45566777777777777666542 567777777777776 66676665677777777777777 777777777777777
Q ss_pred CeeeccCCCCcccChH-HHhHhhhhhcCCCCCC
Q 036236 525 ELLDISHTFIKELPEE-LKKLLEAIQRAPRPDR 556 (557)
Q Consensus 525 ~~L~l~~n~l~~lP~~-i~~L~~L~~L~~~~~~ 556 (557)
++|+|++|+|+.+|.. +..+++|+.|+++++.
T Consensus 138 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 138 THLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 7777777777777643 6677777777766653
No 15
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.35 E-value=2.1e-12 Score=114.52 Aligned_cols=119 Identities=20% Similarity=0.216 Sum_probs=101.0
Q ss_pred EcCCCcc--cCCcc-cccccceEEEccccccccccCCCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCc
Q 036236 436 RAGAGLK--EAPAV-KGWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIF 512 (557)
Q Consensus 436 ~~~~~~~--~~~~~-~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~ 512 (557)
..+..+. .+|.. ..+++++.|++++|.+..++....+++|+.|++++|. +...++..+.++++|++|+|++| .++
T Consensus 31 l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~ 108 (168)
T 2ell_A 31 LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENR-IFGGLDMLAEKLPNLTHLNLSGN-KLK 108 (168)
T ss_dssp CCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCC-CCSCCCHHHHHCTTCCEEECBSS-SCC
T ss_pred CCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCc-CchHHHHHHhhCCCCCEEeccCC-ccC
Confidence 3344444 45543 7789999999999999888667899999999999998 66634444888999999999999 899
Q ss_pred cCC--ccccCCCCCCeeeccCCCCcccCh----HHHhHhhhhhcCCCCCC
Q 036236 513 QLP--VGMSKLGSLELLDISHTFIKELPE----ELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 513 ~lP--~~i~~L~~L~~L~l~~n~l~~lP~----~i~~L~~L~~L~~~~~~ 556 (557)
.+| ..++.+++|++|++++|.++.+|. .+..+++|++|+++++.
T Consensus 109 ~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 109 DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp SSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred cchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 987 799999999999999999999987 78899999999988764
No 16
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.34 E-value=2.8e-12 Score=119.92 Aligned_cols=117 Identities=26% Similarity=0.319 Sum_probs=101.7
Q ss_pred cCCCcccCCcccccccceEEEccccccccccC--CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccC
Q 036236 437 AGAGLKEAPAVKGWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQL 514 (557)
Q Consensus 437 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~l 514 (557)
.+..+..+|. ...++++.|++++|.+..++. ...+++|+.|+|++|. +..+|...|..+++|++|+|++| .++.+
T Consensus 27 ~~~~l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l 103 (229)
T 3e6j_A 27 RSKRHASVPA-GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTN-QLTVL 103 (229)
T ss_dssp TTSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCC
T ss_pred cCCCcCccCC-CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCC-cCCcc
Confidence 4445556654 234789999999999988744 4789999999999998 88999887899999999999999 89988
Q ss_pred Ccc-ccCCCCCCeeeccCCCCcccChHHHhHhhhhhcCCCCCC
Q 036236 515 PVG-MSKLGSLELLDISHTFIKELPEELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 515 P~~-i~~L~~L~~L~l~~n~l~~lP~~i~~L~~L~~L~~~~~~ 556 (557)
|.. ++.+.+|++|+|++|+|+.+|..+.++++|++|++++++
T Consensus 104 ~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~ 146 (229)
T 3e6j_A 104 PSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ 146 (229)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC
T ss_pred ChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc
Confidence 765 689999999999999999999999999999999998874
No 17
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.34 E-value=2.5e-12 Score=119.46 Aligned_cols=108 Identities=20% Similarity=0.281 Sum_probs=95.8
Q ss_pred ccccccceEEEccccccccccC--CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccC-CccccCCCC
Q 036236 447 VKGWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQL-PVGMSKLGS 523 (557)
Q Consensus 447 ~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~l-P~~i~~L~~ 523 (557)
+..+++++.|++++|.+..++. +..+++|+.|+|++|. +..++...|..+++|++|+|++| .++.+ |..+..+.+
T Consensus 53 ~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~ 130 (220)
T 2v70_A 53 FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR-LENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSS 130 (220)
T ss_dssp GGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTT
T ss_pred hccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc-cCccCHhHhcCCcCCCEEECCCC-cCCeECHhHcCCCcc
Confidence 5678899999999999988765 4789999999999998 78888877999999999999999 88877 778999999
Q ss_pred CCeeeccCCCCccc-ChHHHhHhhhhhcCCCCCC
Q 036236 524 LELLDISHTFIKEL-PEELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 524 L~~L~l~~n~l~~l-P~~i~~L~~L~~L~~~~~~ 556 (557)
|++|+|++|+|+.+ |..+..+++|++|+++++.
T Consensus 131 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 131 VRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 99999999999988 6789999999999988774
No 18
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.33 E-value=3.4e-12 Score=110.72 Aligned_cols=117 Identities=20% Similarity=0.221 Sum_probs=98.4
Q ss_pred EEcCCCcc--cCCc-ccccccceEEEccccccccccCCCCCCCccEEEccccccccc-ccchHhhcCCCCcEEEeecCCC
Q 036236 435 VRAGAGLK--EAPA-VKGWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNQELEM-IADGFFQFMPSLKVLKISNCGN 510 (557)
Q Consensus 435 ~~~~~~~~--~~~~-~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~p~~~~~~l~~L~~L~Ls~~~~ 510 (557)
...+..+. .++. +..+++++.|++++|.+..++....+++|++|++++|. +.. +|. .+..+++|++|++++| .
T Consensus 23 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~-~~~~l~~L~~L~ls~N-~ 99 (149)
T 2je0_A 23 VLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNR-VSGGLEV-LAEKCPNLTHLNLSGN-K 99 (149)
T ss_dssp ECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSC-CCSCTHH-HHHHCTTCCEEECTTS-C
T ss_pred EccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCc-ccchHHH-HhhhCCCCCEEECCCC-c
Confidence 33444444 4443 46788999999999999888667899999999999998 666 555 4888999999999999 8
Q ss_pred CccCC--ccccCCCCCCeeeccCCCCcccCh----HHHhHhhhhhcCCCC
Q 036236 511 IFQLP--VGMSKLGSLELLDISHTFIKELPE----ELKKLLEAIQRAPRP 554 (557)
Q Consensus 511 ~~~lP--~~i~~L~~L~~L~l~~n~l~~lP~----~i~~L~~L~~L~~~~ 554 (557)
++.+| ..++.+++|++|++++|.++.+|. .++.+++|++|++++
T Consensus 100 i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 100 IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 98875 899999999999999999999886 689999999999863
No 19
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.32 E-value=1.2e-11 Score=114.80 Aligned_cols=184 Identities=10% Similarity=0.043 Sum_probs=112.7
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhC
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIG 169 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 169 (557)
..++|++..++.+.+++. ......+.|+|++|+|||++|+.+++.... ...-...+.+..+.......+...+.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~-~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVE-RKNIPHLLFSGPPGTGKTATAIALARDLFG-ENWRDNFIEMNASDERGIDVVRHKIKEFAR 94 (226)
T ss_dssp GGCCSCHHHHHHHHHHHH-TTCCCCEEEECSTTSSHHHHHHHHHHHHHG-GGGGGGEEEEETTCTTCHHHHHHHHHHHHT
T ss_pred HHHcCcHHHHHHHHHHHh-CCCCCeEEEECCCCCCHHHHHHHHHHHHhc-cccccceEEeccccccChHHHHHHHHHHhc
Confidence 468999999999999998 444445999999999999999999887521 111112334444333333322222222111
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCc--cccccccccCCCCCCCCcEEEEeeCChHHH--hcccCCCce
Q 036236 170 LFDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTRSIDVC--GSMESHRKF 245 (557)
Q Consensus 170 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~iliTtR~~~v~--~~~~~~~~~ 245 (557)
... ...+++.+|||||++.. .....+...+.....+ .++|+||+..... ........+
T Consensus 95 ~~~-----------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~-~~~i~~~~~~~~~~~~l~~r~~~i 156 (226)
T 2chg_A 95 TAP-----------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKS-CRFILSCNYVSRIIEPIQSRCAVF 156 (226)
T ss_dssp SCC-----------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTT-EEEEEEESCGGGSCHHHHTTSEEE
T ss_pred ccC-----------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCC-CeEEEEeCChhhcCHHHHHhCcee
Confidence 100 01256889999999653 2233333333222333 7888888765321 111223478
Q ss_pred ecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHHH
Q 036236 246 PVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTIG 296 (557)
Q Consensus 246 ~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~ 296 (557)
.+.+++.++..+++.+.+........ .+....+++.++|+|..+..+.
T Consensus 157 ~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 157 RFKPVPKEAMKKRLLEICEKEGVKIT---EDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHHTTCHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999999887643221111 3567789999999998655443
No 20
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.32 E-value=4.1e-12 Score=118.00 Aligned_cols=109 Identities=21% Similarity=0.270 Sum_probs=88.2
Q ss_pred cccccccceEEEcccccccccc--CCCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccC-CccccCCC
Q 036236 446 AVKGWENVRRLSLMQNQIETLS--EVPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQL-PVGMSKLG 522 (557)
Q Consensus 446 ~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~l-P~~i~~L~ 522 (557)
.+..+++++.|++++|.+..++ .+..+++|++|+|++|. +..+|...|..+++|++|+|++| .++.+ |..+..++
T Consensus 51 ~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~ 128 (220)
T 2v9t_B 51 AFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-ITELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLH 128 (220)
T ss_dssp SSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCT
T ss_pred HhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc-CCccCHhHccCCCCCCEEECCCC-CCCEeCHHHcCCCC
Confidence 4566778888888888887763 24778888888888887 77888877788888999999888 77776 56788888
Q ss_pred CCCeeeccCCCCcccChH-HHhHhhhhhcCCCCCC
Q 036236 523 SLELLDISHTFIKELPEE-LKKLLEAIQRAPRPDR 556 (557)
Q Consensus 523 ~L~~L~l~~n~l~~lP~~-i~~L~~L~~L~~~~~~ 556 (557)
+|++|+|++|+|+.+|.. +..+++|++|+++++.
T Consensus 129 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 129 NLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 999999999988888764 7788888888887764
No 21
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.31 E-value=4.7e-12 Score=114.94 Aligned_cols=120 Identities=24% Similarity=0.246 Sum_probs=102.0
Q ss_pred EEEcCCCcccCCcccccccceEEEccccccccccCC-CCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCc
Q 036236 434 LVRAGAGLKEAPAVKGWENVRRLSLMQNQIETLSEV-PTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIF 512 (557)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~ 512 (557)
+...+.++..+|.. -..+++.|++++|.+..+|.. ..+++|+.|+|++|. +..++...|.++++|++|+|++| .++
T Consensus 15 l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N-~l~ 91 (193)
T 2wfh_A 15 VRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYN-RLR 91 (193)
T ss_dssp EECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCC
T ss_pred EEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCC-ccC
Confidence 33445566666642 346899999999999988743 789999999999998 88888777999999999999999 898
Q ss_pred cCCc-cccCCCCCCeeeccCCCCcccChH-HHhHhhhhhcCCCCCC
Q 036236 513 QLPV-GMSKLGSLELLDISHTFIKELPEE-LKKLLEAIQRAPRPDR 556 (557)
Q Consensus 513 ~lP~-~i~~L~~L~~L~l~~n~l~~lP~~-i~~L~~L~~L~~~~~~ 556 (557)
.+|. .++.+++|++|+|++|.|+.+|.. +..+++|++|+++++.
T Consensus 92 ~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 8865 799999999999999999999985 8899999999988764
No 22
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.29 E-value=8.3e-12 Score=114.89 Aligned_cols=117 Identities=24% Similarity=0.335 Sum_probs=91.8
Q ss_pred CCCcccCCc--ccccccceEEEccccccccccCC--CCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCcc
Q 036236 438 GAGLKEAPA--VKGWENVRRLSLMQNQIETLSEV--PTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQ 513 (557)
Q Consensus 438 ~~~~~~~~~--~~~~~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~ 513 (557)
+..+..++. +..++++++|++++|.+..++.. ..+++|++|++++|. +..+|...|..+++|++|+|++| .++.
T Consensus 37 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~ 114 (208)
T 2o6s_A 37 TNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKELALNTN-QLQS 114 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCC
T ss_pred CCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc-CCccCHhHhcCccCCCEEEcCCC-cCcc
Confidence 334444433 45678888899988888877653 678889999999887 77787776788889999999988 7888
Q ss_pred CCcc-ccCCCCCCeeeccCCCCcccChH-HHhHhhhhhcCCCCCC
Q 036236 514 LPVG-MSKLGSLELLDISHTFIKELPEE-LKKLLEAIQRAPRPDR 556 (557)
Q Consensus 514 lP~~-i~~L~~L~~L~l~~n~l~~lP~~-i~~L~~L~~L~~~~~~ 556 (557)
+|.. ++++++|++|+|++|+++.+|.. +.++++|++|+++++.
T Consensus 115 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 115 LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred cCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC
Confidence 7664 68889999999999988888776 6788888888887753
No 23
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.29 E-value=3.6e-12 Score=126.13 Aligned_cols=117 Identities=22% Similarity=0.315 Sum_probs=74.8
Q ss_pred CCCcccCCc-ccccccceEEEccccccccccCC-CCCCCccEEEcccccccccccchH--------hhcCCCCcEEEeec
Q 036236 438 GAGLKEAPA-VKGWENVRRLSLMQNQIETLSEV-PTCPHLLTLFLDFNQELEMIADGF--------FQFMPSLKVLKISN 507 (557)
Q Consensus 438 ~~~~~~~~~-~~~~~~l~~l~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~p~~~--------~~~l~~L~~L~Ls~ 507 (557)
+..+..+|. +..++++++|++++|.+..+|.. ..+++|++|++++|+.++.+|..+ +.++++|++|+|++
T Consensus 113 ~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~ 192 (328)
T 4fcg_A 113 AAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEW 192 (328)
T ss_dssp SSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEE
T ss_pred CCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcC
Confidence 333444443 55666777777777777666543 566677777777765566666541 12366677777777
Q ss_pred CCCCccCCccccCCCCCCeeeccCCCCcccChHHHhHhhhhhcCCCCC
Q 036236 508 CGNIFQLPVGMSKLGSLELLDISHTFIKELPEELKKLLEAIQRAPRPD 555 (557)
Q Consensus 508 ~~~~~~lP~~i~~L~~L~~L~l~~n~l~~lP~~i~~L~~L~~L~~~~~ 555 (557)
| .++.+|..++++++|++|+|++|.++.+|..++++++|++|+++++
T Consensus 193 n-~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n 239 (328)
T 4fcg_A 193 T-GIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGC 239 (328)
T ss_dssp E-CCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTC
T ss_pred C-CcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCC
Confidence 6 6666676677777777777777777777766777777776666654
No 24
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.28 E-value=9.5e-12 Score=111.31 Aligned_cols=117 Identities=24% Similarity=0.375 Sum_probs=97.9
Q ss_pred cCCCcccCCcccccccceEEEccccccccccCC--CCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccC
Q 036236 437 AGAGLKEAPAVKGWENVRRLSLMQNQIETLSEV--PTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQL 514 (557)
Q Consensus 437 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~l 514 (557)
.+.++..+|. ...++++.|++++|.+..++.. ..+++|++|++++|. +..+|...|..+++|++|+|++| .++.+
T Consensus 15 ~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~ 91 (177)
T 2o6r_A 15 NSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHEN-KLQSL 91 (177)
T ss_dssp CSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCC
T ss_pred cCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEECCCC-Ccccc
Confidence 3445555552 3346899999999999887653 688999999999998 88888877899999999999999 89888
Q ss_pred Ccc-ccCCCCCCeeeccCCCCcccChH-HHhHhhhhhcCCCCCC
Q 036236 515 PVG-MSKLGSLELLDISHTFIKELPEE-LKKLLEAIQRAPRPDR 556 (557)
Q Consensus 515 P~~-i~~L~~L~~L~l~~n~l~~lP~~-i~~L~~L~~L~~~~~~ 556 (557)
|.. ++.+++|++|+|++|+++.+|.. +.++++|++|+++++.
T Consensus 92 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 92 PNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 765 68999999999999999999887 4789999999888764
No 25
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.28 E-value=6e-12 Score=114.21 Aligned_cols=120 Identities=23% Similarity=0.252 Sum_probs=99.0
Q ss_pred EEEcCCCcccCCcccccccceEEEccccccccccC---CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCC
Q 036236 434 LVRAGAGLKEAPAVKGWENVRRLSLMQNQIETLSE---VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGN 510 (557)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~ 510 (557)
+...+.++..+|.. -..+++.|++++|.+..++. ...+++|+.|+|++|. +..+++..|..+++|++|+|++| .
T Consensus 13 l~~s~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~ 89 (192)
T 1w8a_A 13 VDCTGRGLKEIPRD-IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLGEN-K 89 (192)
T ss_dssp EECTTSCCSSCCSC-CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSC-C
T ss_pred EEcCCCCcCcCccC-CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCCcccCCEEECCCC-c
Confidence 33445566666642 23489999999999988765 4789999999999998 77775555999999999999999 8
Q ss_pred CccCCc-cccCCCCCCeeeccCCCCccc-ChHHHhHhhhhhcCCCCCC
Q 036236 511 IFQLPV-GMSKLGSLELLDISHTFIKEL-PEELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 511 ~~~lP~-~i~~L~~L~~L~l~~n~l~~l-P~~i~~L~~L~~L~~~~~~ 556 (557)
++.+|. .++.+++|++|+|++|+|+.+ |..+..+++|++|+++++.
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 887755 589999999999999999976 6779999999999998874
No 26
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.28 E-value=2.3e-12 Score=115.26 Aligned_cols=108 Identities=19% Similarity=0.225 Sum_probs=94.5
Q ss_pred CcccccccceEEEccccccccccCCCCCC-CccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCccc-cCCC
Q 036236 445 PAVKGWENVRRLSLMQNQIETLSEVPTCP-HLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVGM-SKLG 522 (557)
Q Consensus 445 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~i-~~L~ 522 (557)
+....+.+++.|++++|.+..++....+. +|+.|++++|. +..++ . +..+++|++|+|++| .++.+|..+ +.++
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~-l~~~~-~-l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNE-IRKLD-G-FPLLRRLKTLLVNNN-RICRIGEGLDQALP 88 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSC-CCEEC-C-CCCCSSCCEEECCSS-CCCEECSCHHHHCT
T ss_pred HhcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCC-CCccc-c-cccCCCCCEEECCCC-cccccCcchhhcCC
Confidence 34455678999999999999887776555 99999999998 77773 3 899999999999999 899998766 9999
Q ss_pred CCCeeeccCCCCcccCh--HHHhHhhhhhcCCCCCC
Q 036236 523 SLELLDISHTFIKELPE--ELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 523 ~L~~L~l~~n~l~~lP~--~i~~L~~L~~L~~~~~~ 556 (557)
+|++|+|++|.|+.+|. .++.+++|++|+++++.
T Consensus 89 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~ 124 (176)
T 1a9n_A 89 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP 124 (176)
T ss_dssp TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred CCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC
Confidence 99999999999999998 89999999999988764
No 27
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.27 E-value=1.2e-11 Score=117.44 Aligned_cols=108 Identities=22% Similarity=0.351 Sum_probs=90.0
Q ss_pred ccccccceEEEccccccccccCC--CCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCc-cccCCCC
Q 036236 447 VKGWENVRRLSLMQNQIETLSEV--PTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPV-GMSKLGS 523 (557)
Q Consensus 447 ~~~~~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~-~i~~L~~ 523 (557)
+..+++++.|++++|.+..++.. ..+++|+.|++++|. +..+|...|..+++|++|+|++| .++.+|. .++.+++
T Consensus 79 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 79 FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTN 156 (251)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred hccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcC
Confidence 56678888999999888877643 678899999999887 77888776788899999999998 8888876 6888999
Q ss_pred CCeeeccCCCCcccCh-HHHhHhhhhhcCCCCCC
Q 036236 524 LELLDISHTFIKELPE-ELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 524 L~~L~l~~n~l~~lP~-~i~~L~~L~~L~~~~~~ 556 (557)
|++|+|++|+++.+|. .+.++++|++|+++++.
T Consensus 157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 9999999999988876 57888899988887764
No 28
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.27 E-value=9.8e-12 Score=119.55 Aligned_cols=119 Identities=29% Similarity=0.421 Sum_probs=85.7
Q ss_pred EcCCCcccCCcccccccceEEEccccccccccC--CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCcc
Q 036236 436 RAGAGLKEAPAVKGWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQ 513 (557)
Q Consensus 436 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~ 513 (557)
..+..+..++.+..++++++|++++|.+..++. ...+++|++|++++|. +..+|...|+.+++|++|+|++| .++.
T Consensus 70 l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~ 147 (272)
T 3rfs_A 70 LGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHN-QLQS 147 (272)
T ss_dssp CTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCC
T ss_pred CCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCC-ccCc
Confidence 344445555566677777777777777776655 3667788888888877 66677666777888888888888 7777
Q ss_pred CCcc-ccCCCCCCeeeccCCCCcccChH-HHhHhhhhhcCCCCCC
Q 036236 514 LPVG-MSKLGSLELLDISHTFIKELPEE-LKKLLEAIQRAPRPDR 556 (557)
Q Consensus 514 lP~~-i~~L~~L~~L~l~~n~l~~lP~~-i~~L~~L~~L~~~~~~ 556 (557)
+|.. ++.+++|++|+|++|+++.+|.. ++++++|++|++++++
T Consensus 148 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 148 LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 7654 57788888888888888877665 5778888887777654
No 29
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.27 E-value=2.3e-12 Score=141.05 Aligned_cols=107 Identities=20% Similarity=0.189 Sum_probs=82.2
Q ss_pred ccccccceEEEccccccccccCC-CCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCccccCCCCCC
Q 036236 447 VKGWENVRRLSLMQNQIETLSEV-PTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVGMSKLGSLE 525 (557)
Q Consensus 447 ~~~~~~l~~l~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~i~~L~~L~ 525 (557)
+..+..++.|+|++|.+..+|.. ..+++|++|+|++|. +..+|.. |+++++|++|+|++| .++.||.+|++|++|+
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNS-LTELPAE-IKNLSNLRVLDLSHN-RLTSLPAELGSCFQLK 296 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSC-CSCCCGG-GGGGTTCCEEECTTS-CCSSCCSSGGGGTTCS
T ss_pred hccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCc-CcccChh-hhCCCCCCEEeCcCC-cCCccChhhcCCCCCC
Confidence 34456778888888887776643 677888888888887 6677766 777888888888888 7778888888888888
Q ss_pred eeeccCCCCcccChHHHhHhhhhhcCCCCCC
Q 036236 526 LLDISHTFIKELPEELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 526 ~L~l~~n~l~~lP~~i~~L~~L~~L~~~~~~ 556 (557)
+|+|++|.|+.||.+|++|++|++|++++++
T Consensus 297 ~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 297 YFYFFDNMVTTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp EEECCSSCCCCCCSSTTSCTTCCCEECTTSC
T ss_pred EEECCCCCCCccChhhhcCCCccEEeCCCCc
Confidence 8888888888888888888888888877764
No 30
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.27 E-value=1.3e-11 Score=117.25 Aligned_cols=109 Identities=26% Similarity=0.369 Sum_probs=95.2
Q ss_pred cccccccceEEEccccccccccC--CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCcc-ccCCC
Q 036236 446 AVKGWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVG-MSKLG 522 (557)
Q Consensus 446 ~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~-i~~L~ 522 (557)
.+..++++++|++++|.+..++. ...+++|++|++++|. +..+|...|..+++|++|+|++| .++.+|.. ++.++
T Consensus 54 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~ 131 (251)
T 3m19_A 54 TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLT 131 (251)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCT
T ss_pred HhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc-ccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCC
Confidence 35677899999999999987765 3788999999999998 88888777899999999999999 89988765 68999
Q ss_pred CCCeeeccCCCCcccCh-HHHhHhhhhhcCCCCCC
Q 036236 523 SLELLDISHTFIKELPE-ELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 523 ~L~~L~l~~n~l~~lP~-~i~~L~~L~~L~~~~~~ 556 (557)
+|++|+|++|+|+.+|. .++++++|++|++++++
T Consensus 132 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 166 (251)
T 3m19_A 132 KLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ 166 (251)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc
Confidence 99999999999999987 58899999999998764
No 31
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.27 E-value=7.6e-12 Score=111.49 Aligned_cols=112 Identities=22% Similarity=0.261 Sum_probs=88.1
Q ss_pred EEEEcCCCcccCCcccccccceEEEccccccccccC--CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCC
Q 036236 433 FLVRAGAGLKEAPAVKGWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGN 510 (557)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~ 510 (557)
.+...+..+..+|.. -.++++.|++++|.+..++. +..+++|+.|+|++|. +..+|...|.++++|++|+|++| .
T Consensus 16 ~l~~~~n~l~~iP~~-~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N-~ 92 (174)
T 2r9u_A 16 LVNCQNIRLASVPAG-IPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDN-H 92 (174)
T ss_dssp EEECCSSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred EEEeCCCCCCccCCC-cCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCC-c
Confidence 344455556666642 23788999999999888754 3788999999999997 88888877788999999999998 8
Q ss_pred CccCCcc-ccCCCCCCeeeccCCCCcccChHHHhHhhh
Q 036236 511 IFQLPVG-MSKLGSLELLDISHTFIKELPEELKKLLEA 547 (557)
Q Consensus 511 ~~~lP~~-i~~L~~L~~L~l~~n~l~~lP~~i~~L~~L 547 (557)
++.+|.. ++.+++|++|+|++|.+...|..+..|.+.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~~~ 130 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNW 130 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGHHHHHH
T ss_pred cceeCHHHhccccCCCEEEeCCCCcccccccHHHHHHH
Confidence 8888775 888999999999999998888777666543
No 32
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.26 E-value=1.3e-11 Score=114.71 Aligned_cols=120 Identities=26% Similarity=0.275 Sum_probs=100.6
Q ss_pred EEEcCCCcccCCcccccccceEEEccccccccccC--CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCC
Q 036236 434 LVRAGAGLKEAPAVKGWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNI 511 (557)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~ 511 (557)
+...+.++..+|.. -.++++.|++++|.+..++. +..+++|+.|+|++|. +..+++..|.++++|++|+|++| .+
T Consensus 16 v~c~~~~l~~iP~~-l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N-~l 92 (220)
T 2v9t_B 16 VDCRGKGLTEIPTN-LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGN-KI 92 (220)
T ss_dssp EECTTSCCSSCCSS-CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC-CCEECTTTTTTCSSCCEEECCSS-CC
T ss_pred EEcCCCCcCcCCCc-cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc-CCCcCHHHhhCCcCCCEEECCCC-cC
Confidence 33445566666642 23689999999999998774 4789999999999998 77775555999999999999999 99
Q ss_pred ccCCcc-ccCCCCCCeeeccCCCCcccC-hHHHhHhhhhhcCCCCCC
Q 036236 512 FQLPVG-MSKLGSLELLDISHTFIKELP-EELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 512 ~~lP~~-i~~L~~L~~L~l~~n~l~~lP-~~i~~L~~L~~L~~~~~~ 556 (557)
+.+|.. +..+++|++|+|++|+|+.+| ..+.++++|++|++++++
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 139 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK 139 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc
Confidence 999876 689999999999999999885 568999999999998775
No 33
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.26 E-value=1.3e-11 Score=112.63 Aligned_cols=115 Identities=15% Similarity=0.234 Sum_probs=92.1
Q ss_pred CCCcccCCcccccccceEEEcccccccc--ccCCCCCCCccEEEccccccccc-ccchHhhcCCCCcEEEeecCCCCccC
Q 036236 438 GAGLKEAPAVKGWENVRRLSLMQNQIET--LSEVPTCPHLLTLFLDFNQELEM-IADGFFQFMPSLKVLKISNCGNIFQL 514 (557)
Q Consensus 438 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~-~p~~~~~~l~~L~~L~Ls~~~~~~~l 514 (557)
+..+..++.+..++++++|++++|.+.. ++....+++|++|++++|. +.. .|.. +..+++|++|+|++|..++.+
T Consensus 75 ~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-i~~~~~~~-l~~l~~L~~L~L~~n~~i~~~ 152 (197)
T 4ezg_A 75 NIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA-HDDSILTK-INTLPKVNSIDLSYNGAITDI 152 (197)
T ss_dssp SCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSB-CBGGGHHH-HTTCSSCCEEECCSCTBCCCC
T ss_pred CCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCc-cCcHhHHH-HhhCCCCCEEEccCCCCcccc
Confidence 3355556677778889999999988875 4555788999999999988 544 4444 888999999999999338888
Q ss_pred CccccCCCCCCeeeccCCCCcccChHHHhHhhhhhcCCCCCC
Q 036236 515 PVGMSKLGSLELLDISHTFIKELPEELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 515 P~~i~~L~~L~~L~l~~n~l~~lP~~i~~L~~L~~L~~~~~~ 556 (557)
| .++.+++|++|++++|.++.+| .+..+++|++|++++++
T Consensus 153 ~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 153 M-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp G-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred H-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcc
Confidence 7 7889999999999999999888 78889999988887764
No 34
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.26 E-value=5.1e-12 Score=125.05 Aligned_cols=121 Identities=21% Similarity=0.276 Sum_probs=104.8
Q ss_pred EEEcCCCcccCCc-ccccccceEEEccccccccccCC-CCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCC
Q 036236 434 LVRAGAGLKEAPA-VKGWENVRRLSLMQNQIETLSEV-PTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNI 511 (557)
Q Consensus 434 ~~~~~~~~~~~~~-~~~~~~l~~l~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~ 511 (557)
+...+..+..+|. +..++++++|++++|.+..+|.. ..+++|++|++++|. +..+|.. ++++++|++|+|++|..+
T Consensus 86 L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~-l~~l~~L~~L~L~~n~~~ 163 (328)
T 4fcg_A 86 LELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPAS-IASLNRLRELSIRACPEL 163 (328)
T ss_dssp EEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGG-GGGCTTCCEEEEEEETTC
T ss_pred EEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHH-HhcCcCCCEEECCCCCCc
Confidence 3334455555553 66788999999999999988764 889999999999998 7799987 899999999999998678
Q ss_pred ccCCccccC---------CCCCCeeeccCCCCcccChHHHhHhhhhhcCCCCCC
Q 036236 512 FQLPVGMSK---------LGSLELLDISHTFIKELPEELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 512 ~~lP~~i~~---------L~~L~~L~l~~n~l~~lP~~i~~L~~L~~L~~~~~~ 556 (557)
+.+|..++. +++|++|+|++|+++.+|.+++++++|++|++++++
T Consensus 164 ~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~ 217 (328)
T 4fcg_A 164 TELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP 217 (328)
T ss_dssp CCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC
T ss_pred cccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC
Confidence 899998875 999999999999999999999999999999988764
No 35
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.25 E-value=1.1e-11 Score=113.05 Aligned_cols=119 Identities=16% Similarity=0.154 Sum_probs=102.1
Q ss_pred EEEcCCCcccCCcccccccceEEEccccccccccCCCCCCCccEEEccccccccc-ccchHhhcCCCCcEEEeecCCCCc
Q 036236 434 LVRAGAGLKEAPAVKGWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNQELEM-IADGFFQFMPSLKVLKISNCGNIF 512 (557)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~p~~~~~~l~~L~~L~Ls~~~~~~ 512 (557)
+...+..+..++.+..+++++.|++++|.+..++....+++|++|++++|. +.. .|.. ++.+++|++|+|++| .++
T Consensus 49 L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~-l~~l~~L~~L~Ls~n-~i~ 125 (197)
T 4ezg_A 49 ITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKD-VTSDKIPN-LSGLTSLTLLDISHS-AHD 125 (197)
T ss_dssp EEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTT-CBGGGSCC-CTTCTTCCEEECCSS-BCB
T ss_pred EeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCc-cCcccChh-hcCCCCCCEEEecCC-ccC
Confidence 334455666777788889999999999988888888899999999999998 554 5555 889999999999999 777
Q ss_pred c-CCccccCCCCCCeeeccCCC-CcccChHHHhHhhhhhcCCCCCC
Q 036236 513 Q-LPVGMSKLGSLELLDISHTF-IKELPEELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 513 ~-lP~~i~~L~~L~~L~l~~n~-l~~lP~~i~~L~~L~~L~~~~~~ 556 (557)
. .|..++.+++|++|+|++|. ++.+| .+..+++|++|++++++
T Consensus 126 ~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 126 DSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG 170 (197)
T ss_dssp GGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC
T ss_pred cHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC
Confidence 4 78899999999999999998 99998 79999999999988764
No 36
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.24 E-value=1.2e-11 Score=109.76 Aligned_cols=107 Identities=23% Similarity=0.256 Sum_probs=79.2
Q ss_pred EEcCCCcccCCcccccccceEEEccccccccccC--CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCc
Q 036236 435 VRAGAGLKEAPAVKGWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIF 512 (557)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~ 512 (557)
...+..+..+|.. -.++++.|++++|.+..++. +..+++|+.|+|++|. +..+|...|..+++|++|+|++| .++
T Consensus 15 ~~s~n~l~~ip~~-~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N-~l~ 91 (170)
T 3g39_A 15 DCSGKSLASVPTG-IPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLNDN-QLK 91 (170)
T ss_dssp ECTTSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCC
T ss_pred EeCCCCcCccCcc-CCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECCCC-ccC
Confidence 3344555566542 23678888888888887744 3678888888888887 77888776788888888888888 788
Q ss_pred cCCc-cccCCCCCCeeeccCCCCcccChHHHhH
Q 036236 513 QLPV-GMSKLGSLELLDISHTFIKELPEELKKL 544 (557)
Q Consensus 513 ~lP~-~i~~L~~L~~L~l~~n~l~~lP~~i~~L 544 (557)
.+|. .+..+++|++|+|++|.+...+..+..+
T Consensus 92 ~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l 124 (170)
T 3g39_A 92 SIPRGAFDNLKSLTHIWLLNNPWDCACSDILYL 124 (170)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCTTBGGGHHH
T ss_pred EeCHHHhcCCCCCCEEEeCCCCCCCCchhHHHH
Confidence 8876 4788888888888888877665544333
No 37
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.24 E-value=1.5e-11 Score=114.12 Aligned_cols=119 Identities=15% Similarity=0.155 Sum_probs=99.6
Q ss_pred EEcCCCcccCCcccccccceEEEccccccccccC---CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCC
Q 036236 435 VRAGAGLKEAPAVKGWENVRRLSLMQNQIETLSE---VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNI 511 (557)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~ 511 (557)
...+..+..+|. .-...++.|++++|.+..++. +..+++|+.|++++|. +..++...|..+++|++|+|++| .+
T Consensus 17 ~~s~n~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N-~l 93 (220)
T 2v70_A 17 DCSNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSN-RL 93 (220)
T ss_dssp ECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CC
T ss_pred EeCCCCcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCC-cc
Confidence 334455566654 224567899999999998743 3689999999999998 88888866999999999999999 88
Q ss_pred ccCCc-cccCCCCCCeeeccCCCCccc-ChHHHhHhhhhhcCCCCCC
Q 036236 512 FQLPV-GMSKLGSLELLDISHTFIKEL-PEELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 512 ~~lP~-~i~~L~~L~~L~l~~n~l~~l-P~~i~~L~~L~~L~~~~~~ 556 (557)
+.+|. .++.+++|++|+|++|+|+.+ |..+.++++|++|++++++
T Consensus 94 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 140 (220)
T 2v70_A 94 ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ 140 (220)
T ss_dssp CCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC
T ss_pred CccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc
Confidence 88865 599999999999999999988 5679999999999998764
No 38
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.23 E-value=8.8e-12 Score=132.21 Aligned_cols=114 Identities=20% Similarity=0.131 Sum_probs=84.2
Q ss_pred EEEcCCCcccCCcccccccceEEEccccccccccCC-CCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCc
Q 036236 434 LVRAGAGLKEAPAVKGWENVRRLSLMQNQIETLSEV-PTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIF 512 (557)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~ 512 (557)
+...+..+..+|.+..+++++.|++++|.+..+|.. ..+++|+.|+|++|. +..+| . ++++++|++|+|++| .++
T Consensus 446 L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~-l~~l~~L~~L~Ls~N-~l~ 521 (567)
T 1dce_A 446 LHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD-G-VANLPRLQELLLCNN-RLQ 521 (567)
T ss_dssp EECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-G-GTTCSSCCEEECCSS-CCC
T ss_pred EEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCCCc-c-cCCCCCCcEEECCCC-CCC
Confidence 444556666677777778888888888888777654 677888888888887 66677 4 778888888888888 777
Q ss_pred cC--CccccCCCCCCeeeccCCCCcccChHH----HhHhhhhhcC
Q 036236 513 QL--PVGMSKLGSLELLDISHTFIKELPEEL----KKLLEAIQRA 551 (557)
Q Consensus 513 ~l--P~~i~~L~~L~~L~l~~n~l~~lP~~i----~~L~~L~~L~ 551 (557)
.+ |..++.|++|++|+|++|.++.+|+.+ ..+++|+.|+
T Consensus 522 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 522 QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 76 778888888888888888887776543 3356666664
No 39
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.23 E-value=2.7e-11 Score=111.37 Aligned_cols=117 Identities=24% Similarity=0.362 Sum_probs=99.3
Q ss_pred cCCCcccCCcccccccceEEEccccccccccC--CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccC
Q 036236 437 AGAGLKEAPAVKGWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQL 514 (557)
Q Consensus 437 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~l 514 (557)
.+.++..+|. ...+++++|++++|.+..++. ...+++|+.|++++|. +..+|...|..+++|++|+|++| .++.+
T Consensus 15 ~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~ 91 (208)
T 2o6s_A 15 YSQGRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTN-QLQSL 91 (208)
T ss_dssp CSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCC
T ss_pred cCCCccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCC-cCCcc
Confidence 3444555543 234689999999999988776 3689999999999998 88888887899999999999999 89988
Q ss_pred Ccc-ccCCCCCCeeeccCCCCcccChH-HHhHhhhhhcCCCCCC
Q 036236 515 PVG-MSKLGSLELLDISHTFIKELPEE-LKKLLEAIQRAPRPDR 556 (557)
Q Consensus 515 P~~-i~~L~~L~~L~l~~n~l~~lP~~-i~~L~~L~~L~~~~~~ 556 (557)
|.. ++++++|++|+|++|+++.+|.. +.++++|++|++++++
T Consensus 92 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (208)
T 2o6s_A 92 PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ 135 (208)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc
Confidence 765 69999999999999999999876 7899999999998764
No 40
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.22 E-value=2.7e-11 Score=116.52 Aligned_cols=121 Identities=26% Similarity=0.406 Sum_probs=100.7
Q ss_pred EEEcCCCcccCCc--ccccccceEEEccccccccccC--CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCC
Q 036236 434 LVRAGAGLKEAPA--VKGWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCG 509 (557)
Q Consensus 434 ~~~~~~~~~~~~~--~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~ 509 (557)
+...+..+..++. +..+++++.|++++|.+..++. ...+++|++|++++|. +..+|...++.+++|++|+|++|
T Consensus 90 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n- 167 (272)
T 3rfs_A 90 LILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYN- 167 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-
T ss_pred EECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCC-
Confidence 4444555555544 5778899999999999988766 4788999999999997 88888877889999999999999
Q ss_pred CCccCCcc-ccCCCCCCeeeccCCCCcccChH-HHhHhhhhhcCCCCCC
Q 036236 510 NIFQLPVG-MSKLGSLELLDISHTFIKELPEE-LKKLLEAIQRAPRPDR 556 (557)
Q Consensus 510 ~~~~lP~~-i~~L~~L~~L~l~~n~l~~lP~~-i~~L~~L~~L~~~~~~ 556 (557)
.++.+|.. ++.+++|++|+|++|+++.+|+. +.++++|++|+++++.
T Consensus 168 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 168 QLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence 88888664 68999999999999999988765 6899999999988764
No 41
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.22 E-value=8.8e-12 Score=108.09 Aligned_cols=103 Identities=25% Similarity=0.172 Sum_probs=91.5
Q ss_pred cccceEEEccccccc--cccCC-CCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCcc-CCccccCCCCCC
Q 036236 450 WENVRRLSLMQNQIE--TLSEV-PTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQ-LPVGMSKLGSLE 525 (557)
Q Consensus 450 ~~~l~~l~l~~~~~~--~~~~~-~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~-lP~~i~~L~~L~ 525 (557)
.++++.|++++|.+. .+|.. ..+++|+.|++++|. +..+ .. ++.+++|++|+|++| .++. +|..++.+++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~-~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI-AN-LPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCC-TT-CCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCc-hh-hhcCCCCCEEECCCC-cccchHHHHhhhCCCCC
Confidence 368999999999998 67665 789999999999998 7777 33 899999999999999 8887 888888899999
Q ss_pred eeeccCCCCcccC--hHHHhHhhhhhcCCCCCC
Q 036236 526 LLDISHTFIKELP--EELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 526 ~L~l~~n~l~~lP--~~i~~L~~L~~L~~~~~~ 556 (557)
+|++++|.++.+| ..++++++|++|++++++
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~ 124 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE 124 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc
Confidence 9999999999876 789999999999998864
No 42
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.22 E-value=2.4e-11 Score=117.96 Aligned_cols=117 Identities=20% Similarity=0.267 Sum_probs=81.9
Q ss_pred CCCcccCCc-ccccccceEEEccccccccccC--CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccC
Q 036236 438 GAGLKEAPA-VKGWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQL 514 (557)
Q Consensus 438 ~~~~~~~~~-~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~l 514 (557)
+..+..+|. +..++++++|++++|.+..++. +..+++|+.|++++|. +..+|...|..+++|++|+|++| .++.+
T Consensus 86 ~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~l 163 (290)
T 1p9a_G 86 HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANN-NLTEL 163 (290)
T ss_dssp SSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTS-CCSCC
T ss_pred CCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCC-cCCcc
Confidence 333444433 3456677777777777776653 3667777777777776 66777666777777888888777 77777
Q ss_pred Ccc-ccCCCCCCeeeccCCCCcccChHHHhHhhhhhcCCCCCC
Q 036236 515 PVG-MSKLGSLELLDISHTFIKELPEELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 515 P~~-i~~L~~L~~L~l~~n~l~~lP~~i~~L~~L~~L~~~~~~ 556 (557)
|.. +..+++|++|+|++|+|+.+|..+..+.+|++|+++++.
T Consensus 164 ~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 164 PAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred CHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 664 466778888888888887888777777777777766653
No 43
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.21 E-value=3.6e-11 Score=116.66 Aligned_cols=118 Identities=24% Similarity=0.293 Sum_probs=99.6
Q ss_pred cCCCcccCCcccccccceEEEccccccccccCC-CCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCC
Q 036236 437 AGAGLKEAPAVKGWENVRRLSLMQNQIETLSEV-PTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLP 515 (557)
Q Consensus 437 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP 515 (557)
.+..+..++....+++++.|++++|.+..+|.. ..+++|+.|++++|. +..+|...|..+++|++|+|++| .++.+|
T Consensus 63 ~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~ 140 (290)
T 1p9a_G 63 DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGN-ELKTLP 140 (290)
T ss_dssp TTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTS-CCCCCC
T ss_pred CCCccCcccCCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCC-CCCccC
Confidence 444455555556778999999999999988765 788999999999998 88888777899999999999999 888887
Q ss_pred cc-ccCCCCCCeeeccCCCCcccChH-HHhHhhhhhcCCCCCC
Q 036236 516 VG-MSKLGSLELLDISHTFIKELPEE-LKKLLEAIQRAPRPDR 556 (557)
Q Consensus 516 ~~-i~~L~~L~~L~l~~n~l~~lP~~-i~~L~~L~~L~~~~~~ 556 (557)
.. +..+++|++|+|++|+|+.+|.. +.++++|++|++++++
T Consensus 141 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~ 183 (290)
T 1p9a_G 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183 (290)
T ss_dssp TTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCc
Confidence 64 68899999999999999999987 4789999999988764
No 44
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.20 E-value=8.7e-11 Score=104.57 Aligned_cols=101 Identities=18% Similarity=0.294 Sum_probs=90.0
Q ss_pred ceEEEccccccccccCCCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCcc-ccCCCCCCeeeccC
Q 036236 453 VRRLSLMQNQIETLSEVPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVG-MSKLGSLELLDISH 531 (557)
Q Consensus 453 l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~-i~~L~~L~~L~l~~ 531 (557)
.+.+++++|.+..+|... .++|+.|+|++|. +..+++..|.++++|++|+|++| .++.+|.. ++++++|++|+|++
T Consensus 14 ~~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGI-PTDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSCCSCC-CTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCccCCCc-CCCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCC
Confidence 367899999999888753 3899999999998 88887666999999999999999 99999876 58999999999999
Q ss_pred CCCcccChH-HHhHhhhhhcCCCCCC
Q 036236 532 TFIKELPEE-LKKLLEAIQRAPRPDR 556 (557)
Q Consensus 532 n~l~~lP~~-i~~L~~L~~L~~~~~~ 556 (557)
|+|+.+|.. +.++++|++|+++++.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred CccceeCHHHhccccCCCEEEeCCCC
Confidence 999999987 8999999999998874
No 45
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.18 E-value=5.9e-11 Score=113.92 Aligned_cols=108 Identities=25% Similarity=0.391 Sum_probs=76.9
Q ss_pred ccccccceEEEccccccccccC--CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCc-cccCCCC
Q 036236 447 VKGWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPV-GMSKLGS 523 (557)
Q Consensus 447 ~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~-~i~~L~~ 523 (557)
+..++++++|++++|.+..++. ...+++|++|++++|. +..+|...|..+++|++|+|++| .++.+|. .+.++++
T Consensus 105 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~ 182 (270)
T 2o6q_A 105 FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTE 182 (270)
T ss_dssp TTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTT
T ss_pred cccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCC-cCcEeChhHhccCCC
Confidence 3456677777777777766554 2567777777777776 66677666677777778887777 6777655 4677778
Q ss_pred CCeeeccCCCCcccChH-HHhHhhhhhcCCCCCC
Q 036236 524 LELLDISHTFIKELPEE-LKKLLEAIQRAPRPDR 556 (557)
Q Consensus 524 L~~L~l~~n~l~~lP~~-i~~L~~L~~L~~~~~~ 556 (557)
|++|+|++|+++.+|.. +..+++|+.|+++++.
T Consensus 183 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 183 LKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 88888888877777764 6677777777776653
No 46
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.18 E-value=6.2e-11 Score=113.79 Aligned_cols=106 Identities=27% Similarity=0.351 Sum_probs=68.8
Q ss_pred cccccceEEEccccccccccCC--CCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCcc-ccCCCCC
Q 036236 448 KGWENVRRLSLMQNQIETLSEV--PTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVG-MSKLGSL 524 (557)
Q Consensus 448 ~~~~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~-i~~L~~L 524 (557)
..++++++|++++|.+..++.. ..+++|+.|++++|. +..++...|..+++|++|+|++| .++.+|.. ++.+++|
T Consensus 82 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L 159 (270)
T 2o6q_A 82 KELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSL 159 (270)
T ss_dssp SSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred cCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCccc
Confidence 4455666666666666655432 456666666666666 55566555666777777777777 66666553 5677777
Q ss_pred CeeeccCCCCcccChH-HHhHhhhhhcCCCCC
Q 036236 525 ELLDISHTFIKELPEE-LKKLLEAIQRAPRPD 555 (557)
Q Consensus 525 ~~L~l~~n~l~~lP~~-i~~L~~L~~L~~~~~ 555 (557)
++|+|++|+++.+|.. +.++++|++|+++++
T Consensus 160 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (270)
T 2o6q_A 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNN 191 (270)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred ceeEecCCcCcEeChhHhccCCCcCEEECCCC
Confidence 7777777777776654 666777777776654
No 47
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.18 E-value=1.4e-11 Score=109.20 Aligned_cols=103 Identities=26% Similarity=0.215 Sum_probs=91.7
Q ss_pred cccceEEEccccccc--cccCC-CCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCcc-CCccccCCCCCC
Q 036236 450 WENVRRLSLMQNQIE--TLSEV-PTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQ-LPVGMSKLGSLE 525 (557)
Q Consensus 450 ~~~l~~l~l~~~~~~--~~~~~-~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~-lP~~i~~L~~L~ 525 (557)
.++++.|++++|.+. .+|.. ..+++|+.|++++|. +..+ .. +..+++|++|+|++| .+.. +|..++++++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SN-LPKLPKLKKLELSEN-RIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SS-CCCCSSCCEEEEESC-CCCSCCCHHHHHCTTCC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hh-hccCCCCCEEECcCC-cCchHHHHHHhhCCCCC
Confidence 368999999999998 77766 789999999999998 7777 33 899999999999999 8887 788888899999
Q ss_pred eeeccCCCCcccC--hHHHhHhhhhhcCCCCCC
Q 036236 526 LLDISHTFIKELP--EELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 526 ~L~l~~n~l~~lP--~~i~~L~~L~~L~~~~~~ 556 (557)
+|+|++|.++.+| ..+..+++|++|+++++.
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~ 131 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE 131 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCc
Confidence 9999999999987 789999999999998764
No 48
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.17 E-value=4.7e-11 Score=119.78 Aligned_cols=105 Identities=25% Similarity=0.326 Sum_probs=53.7
Q ss_pred ccccceEEEccccccccccC--CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccC-CccccCCCCCC
Q 036236 449 GWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQL-PVGMSKLGSLE 525 (557)
Q Consensus 449 ~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~l-P~~i~~L~~L~ 525 (557)
.+++|+.|++++|.+..++. +..+++|+.|+|++|. +..++...|..+++|++|+|++| .+..+ |..+..+.+|+
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~ 139 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQ 139 (361)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCC
T ss_pred cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCCEEECCCC-cccEECHHHhCCcccCC
Confidence 44455555555555554442 2455555555555555 44554444555555555555555 44444 34555555555
Q ss_pred eeeccCCCCcccChHH----HhHhhhhhcCCCCC
Q 036236 526 LLDISHTFIKELPEEL----KKLLEAIQRAPRPD 555 (557)
Q Consensus 526 ~L~l~~n~l~~lP~~i----~~L~~L~~L~~~~~ 555 (557)
+|+|++|+|+.+|..+ .++++|++|+++++
T Consensus 140 ~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 140 KLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp EEECCSSCCCSCCGGGTC----CTTCCEEECCSS
T ss_pred EEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC
Confidence 5555555555555443 34555555555443
No 49
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.17 E-value=6.2e-11 Score=113.23 Aligned_cols=114 Identities=20% Similarity=0.223 Sum_probs=74.4
Q ss_pred EcCCCcccCCcccccccceEEEccccccccccCCCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCC
Q 036236 436 RAGAGLKEAPAVKGWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLP 515 (557)
Q Consensus 436 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP 515 (557)
..+..+..++.+..+++++.|++++|.+..++....+++|+.|++++|. +..+|.. .. ++|++|+|++| .++.+|
T Consensus 48 l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~-l~~l~~~--~~-~~L~~L~L~~N-~l~~~~ 122 (263)
T 1xeu_A 48 GDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNR-LKNLNGI--PS-ACLSRLFLDNN-ELRDTD 122 (263)
T ss_dssp CTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSC-CSCCTTC--CC-SSCCEEECCSS-CCSBSG
T ss_pred CcCCCcccchHHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCc-cCCcCcc--cc-CcccEEEccCC-ccCCCh
Confidence 3444555556666667777777777777666666667777777777776 6566542 22 66777777776 666665
Q ss_pred ccccCCCCCCeeeccCCCCcccChHHHhHhhhhhcCCCCCC
Q 036236 516 VGMSKLGSLELLDISHTFIKELPEELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 516 ~~i~~L~~L~~L~l~~n~l~~lP~~i~~L~~L~~L~~~~~~ 556 (557)
.++.+++|++|+|++|+|+.+| .++.+++|++|++++++
T Consensus 123 -~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~ 161 (263)
T 1xeu_A 123 -SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNE 161 (263)
T ss_dssp -GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSC
T ss_pred -hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCc
Confidence 4667777777777777777665 56666777766666553
No 50
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.17 E-value=6.7e-11 Score=113.94 Aligned_cols=107 Identities=25% Similarity=0.361 Sum_probs=56.4
Q ss_pred ccccccceEEEccccccccccC--CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCc-cccCCCC
Q 036236 447 VKGWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPV-GMSKLGS 523 (557)
Q Consensus 447 ~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~-~i~~L~~ 523 (557)
+..++++++|++++|.+..++. ...+++|++|++++|. +..++...|.++++|++|++++| .+..+|. .++++++
T Consensus 48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~ 125 (276)
T 2z62_A 48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKT 125 (276)
T ss_dssp TTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTS-CCCCSTTCCCTTCTT
T ss_pred hccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccEEECCCC-CccccCchhcccCCC
Confidence 3444555556665555554443 2455555555555555 44444333555555555555555 4544433 4555555
Q ss_pred CCeeeccCCCCcc--cChHHHhHhhhhhcCCCCC
Q 036236 524 LELLDISHTFIKE--LPEELKKLLEAIQRAPRPD 555 (557)
Q Consensus 524 L~~L~l~~n~l~~--lP~~i~~L~~L~~L~~~~~ 555 (557)
|++|++++|.++. +|..++++++|++|+++++
T Consensus 126 L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N 159 (276)
T 2z62_A 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159 (276)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred CCEEECcCCccceecCchhhccCCCCCEEECCCC
Confidence 5555555555554 4555555555555555543
No 51
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.17 E-value=2.8e-11 Score=130.94 Aligned_cols=107 Identities=25% Similarity=0.361 Sum_probs=62.4
Q ss_pred ccccccceEEEccccccccccC--CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCc-cccCCCC
Q 036236 447 VKGWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPV-GMSKLGS 523 (557)
Q Consensus 447 ~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~-~i~~L~~ 523 (557)
+..+++|++|++++|.++.++. +.++++|++|+|++|+ +..+|...|.++++|++|+|++| .++.+|. .|++|++
T Consensus 72 f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~~~~L~~ 149 (635)
T 4g8a_A 72 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKT 149 (635)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCEEECTTS-CCCCSTTCCCTTCTT
T ss_pred HhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCEEECCCC-cCCCCChhhhhcCcc
Confidence 4455556666666666555543 2455666666666665 55555555566666666666666 5555544 3566666
Q ss_pred CCeeeccCCCCcc--cChHHHhHhhhhhcCCCCC
Q 036236 524 LELLDISHTFIKE--LPEELKKLLEAIQRAPRPD 555 (557)
Q Consensus 524 L~~L~l~~n~l~~--lP~~i~~L~~L~~L~~~~~ 555 (557)
|++|+|++|.++. +|..+++|++|++|+++++
T Consensus 150 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 150 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred cCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence 6666666666553 3555666666666665554
No 52
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.17 E-value=7.5e-11 Score=114.48 Aligned_cols=109 Identities=22% Similarity=0.295 Sum_probs=57.5
Q ss_pred CcccCCcccccccceEEEccccccccccCCCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCcccc
Q 036236 440 GLKEAPAVKGWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVGMS 519 (557)
Q Consensus 440 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~i~ 519 (557)
.+..++.+..++++++|++++|.+..++....+++|+.|++++|. +..++ . +..+++|++|+|++| .++.+|. ++
T Consensus 101 ~l~~~~~l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~-l~~~~-~-l~~l~~L~~L~L~~N-~l~~~~~-l~ 175 (291)
T 1h6t_A 101 KVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNK-ITDIT-V-LSRLTKLDTLSLEDN-QISDIVP-LA 175 (291)
T ss_dssp CCCCGGGGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSC-CCCCG-G-GGGCTTCSEEECCSS-CCCCCGG-GT
T ss_pred cCCCChhhccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCc-CCcch-h-hccCCCCCEEEccCC-ccccchh-hc
Confidence 333344444455555555555555554444555555555555554 44442 1 555555555555555 5555544 55
Q ss_pred CCCCCCeeeccCCCCcccChHHHhHhhhhhcCCCC
Q 036236 520 KLGSLELLDISHTFIKELPEELKKLLEAIQRAPRP 554 (557)
Q Consensus 520 ~L~~L~~L~l~~n~l~~lP~~i~~L~~L~~L~~~~ 554 (557)
.+++|++|+|++|.++.+|. +..+++|+.|++++
T Consensus 176 ~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~ 209 (291)
T 1h6t_A 176 GLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFS 209 (291)
T ss_dssp TCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEE
T ss_pred CCCccCEEECCCCcCCCChh-hccCCCCCEEECcC
Confidence 55555555555555555543 55555555555443
No 53
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.16 E-value=8.3e-11 Score=115.18 Aligned_cols=114 Identities=18% Similarity=0.271 Sum_probs=77.4
Q ss_pred cCCCcccCCcccccccceEEEccccccccccCCCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCc
Q 036236 437 AGAGLKEAPAVKGWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPV 516 (557)
Q Consensus 437 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~ 516 (557)
.+..+..++.+..+++++.|++++|.+..++....+++|+.|++++|. +..++. +..+++|++|+|++| .++.+|.
T Consensus 71 ~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n-~l~~~~~ 146 (308)
T 1h6u_A 71 KDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQ-ITDVTP--LAGLSNLQVLYLDLN-QITNISP 146 (308)
T ss_dssp CSSCCCCCGGGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSC-CCCCGG--GTTCTTCCEEECCSS-CCCCCGG
T ss_pred cCCcCCCChhHccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCC-CCCchh--hcCCCCCCEEECCCC-ccCcCcc
Confidence 334444444456666677777777776666666667777777777776 555554 667777777777777 6766664
Q ss_pred cccCCCCCCeeeccCCCCcccChHHHhHhhhhhcCCCCCC
Q 036236 517 GMSKLGSLELLDISHTFIKELPEELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 517 ~i~~L~~L~~L~l~~n~l~~lP~~i~~L~~L~~L~~~~~~ 556 (557)
++.+++|++|+|++|.++.+|. +.++++|++|++++++
T Consensus 147 -l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 147 -LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNK 184 (308)
T ss_dssp -GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred -ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCc
Confidence 7777777777777777777766 7777777777776653
No 54
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.15 E-value=8.1e-11 Score=127.29 Aligned_cols=117 Identities=21% Similarity=0.202 Sum_probs=97.5
Q ss_pred cCCCcccCCcccccccceEEEccccccccccC--CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccC
Q 036236 437 AGAGLKEAPAVKGWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQL 514 (557)
Q Consensus 437 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~l 514 (557)
.+.++..+|.. -..++++|++++|.++.++. +.++++|++|+|++|. +..+|+..|.++++|++|+|++| .++.+
T Consensus 39 ~~~~l~~vP~~-lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l 115 (635)
T 4g8a_A 39 MELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGN-PIQSL 115 (635)
T ss_dssp TTSCCSSCCSS-SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTC-CCCEE
T ss_pred CCCCcCccCCC-CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc-CCCcChhHhcCCCCCCEEEccCC-cCCCC
Confidence 34456666641 12478999999999998875 4789999999999998 88888877999999999999999 89988
Q ss_pred Cc-cccCCCCCCeeeccCCCCcccChH-HHhHhhhhhcCCCCCC
Q 036236 515 PV-GMSKLGSLELLDISHTFIKELPEE-LKKLLEAIQRAPRPDR 556 (557)
Q Consensus 515 P~-~i~~L~~L~~L~l~~n~l~~lP~~-i~~L~~L~~L~~~~~~ 556 (557)
|. .|++|++|++|+|++|+++.+|.. +++|++|++|+++.+.
T Consensus 116 ~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~ 159 (635)
T 4g8a_A 116 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 159 (635)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC
T ss_pred CHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCc
Confidence 75 579999999999999999998864 8999999999988764
No 55
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.15 E-value=1.1e-10 Score=114.18 Aligned_cols=110 Identities=25% Similarity=0.406 Sum_probs=59.9
Q ss_pred CcccCCcccccccceEEEccccccccccCCCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCcccc
Q 036236 440 GLKEAPAVKGWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVGMS 519 (557)
Q Consensus 440 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~i~ 519 (557)
.+..++.+..++++++|++++|.+..++....+++|+.|++++|. +..++. +..+++|++|+|++| .++.+|. ++
T Consensus 96 ~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n-~l~~~~~-l~ 170 (308)
T 1h6u_A 96 PLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQ-ITNISP--LAGLTNLQYLSIGNA-QVSDLTP-LA 170 (308)
T ss_dssp CCSCCGGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSC-CCCCGG--GGGCTTCCEEECCSS-CCCCCGG-GT
T ss_pred cCCCchhhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCc-cCcCcc--ccCCCCccEEEccCC-cCCCChh-hc
Confidence 334444455555566666666655555555555556666665555 444443 455555555555555 5555544 55
Q ss_pred CCCCCCeeeccCCCCcccChHHHhHhhhhhcCCCCC
Q 036236 520 KLGSLELLDISHTFIKELPEELKKLLEAIQRAPRPD 555 (557)
Q Consensus 520 ~L~~L~~L~l~~n~l~~lP~~i~~L~~L~~L~~~~~ 555 (557)
.+++|++|+|++|.++.+|. +..+++|++|+++++
T Consensus 171 ~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N 205 (308)
T 1h6u_A 171 NLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNN 205 (308)
T ss_dssp TCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTS
T ss_pred CCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCC
Confidence 55555555555555555554 555555555555444
No 56
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.14 E-value=5.1e-11 Score=126.34 Aligned_cols=101 Identities=18% Similarity=0.234 Sum_probs=95.2
Q ss_pred cceEEEccccccccccCCCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCccccCCCCCCeeeccC
Q 036236 452 NVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVGMSKLGSLELLDISH 531 (557)
Q Consensus 452 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~i~~L~~L~~L~l~~ 531 (557)
.++.|++++|.+..+|....+++|+.|+|++|. +..+|.. ++++++|++|+|++| .++.+| .+++|++|++|+|++
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~-l~~lp~~-~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNR-LRALPPA-LAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSC-CCCCCGG-GGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCS
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCccc-ccccchh-hhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCC
Confidence 488999999999999988999999999999998 8899987 999999999999999 899999 999999999999999
Q ss_pred CCCccc--ChHHHhHhhhhhcCCCCCC
Q 036236 532 TFIKEL--PEELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 532 n~l~~l--P~~i~~L~~L~~L~~~~~~ 556 (557)
|+|+.+ |..+++|++|+.|++++++
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCc
Confidence 999998 8999999999999998874
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.13 E-value=1.4e-10 Score=112.14 Aligned_cols=108 Identities=22% Similarity=0.308 Sum_probs=93.8
Q ss_pred ccccccceEEEccccccccccC--CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccC-CccccCCCC
Q 036236 447 VKGWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQL-PVGMSKLGS 523 (557)
Q Consensus 447 ~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~l-P~~i~~L~~ 523 (557)
+..+++++.|++++|.+..++. ...+++|+.|++++|. +..+|...+..+++|++|+|++| .++.+ |..++.+++
T Consensus 125 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~ 202 (285)
T 1ozn_A 125 FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGR 202 (285)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTT
T ss_pred hhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEECCCC-cccccCHhHccCccc
Confidence 5667889999999999988765 3678999999999998 77888776889999999999999 77766 889999999
Q ss_pred CCeeeccCCCCcccChH-HHhHhhhhhcCCCCCC
Q 036236 524 LELLDISHTFIKELPEE-LKKLLEAIQRAPRPDR 556 (557)
Q Consensus 524 L~~L~l~~n~l~~lP~~-i~~L~~L~~L~~~~~~ 556 (557)
|++|+|++|.++.+|.. +..+++|++|+++++.
T Consensus 203 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred ccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 99999999999998865 8899999999988774
No 58
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.13 E-value=1.5e-10 Score=112.39 Aligned_cols=116 Identities=22% Similarity=0.303 Sum_probs=89.4
Q ss_pred EEcCCCcccCCcccccccceEEEccccccccccCCCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccC
Q 036236 435 VRAGAGLKEAPAVKGWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQL 514 (557)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~l 514 (557)
...+..+..++.+..+++++.|++++|.+..++....+++|+.|++++|. +..++. +..+++|++|+|++| .++.+
T Consensus 74 ~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~-i~~~~~--l~~l~~L~~L~l~~n-~l~~~ 149 (291)
T 1h6t_A 74 FLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNG-ISDING--LVHLPQLESLYLGNN-KITDI 149 (291)
T ss_dssp ECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSC-CCCCGG--GGGCTTCCEEECCSS-CCCCC
T ss_pred EccCCccCCCcccccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCc-CCCChh--hcCCCCCCEEEccCC-cCCcc
Confidence 33444555555567777888888888888777777788888888888887 666643 778888888888888 78777
Q ss_pred CccccCCCCCCeeeccCCCCcccChHHHhHhhhhhcCCCCCC
Q 036236 515 PVGMSKLGSLELLDISHTFIKELPEELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 515 P~~i~~L~~L~~L~l~~n~l~~lP~~i~~L~~L~~L~~~~~~ 556 (557)
..++.+++|++|+|++|+++.+|. +..+++|++|+++++.
T Consensus 150 -~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 150 -TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp -GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred -hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCc
Confidence 478888888888888888888876 8888888888887764
No 59
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.11 E-value=2.2e-10 Score=112.96 Aligned_cols=183 Identities=15% Similarity=0.168 Sum_probs=110.4
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcc-eEEEEEeCCccCHHHHHHHHHHHh
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFD-CVIWVVVSKDLRLEKIQEDIGKKI 168 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l 168 (557)
..++|++..++.+.+++. .+..+.+.|+|++|+|||++|+.+++... ...+. ..+++..+.......+ ++++..+
T Consensus 21 ~~~~g~~~~~~~l~~~l~-~~~~~~~ll~G~~G~GKt~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~ 96 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAK-DGNMPHMIISGMPGIGKTTSVHCLAHELL--GRSYADGVLELNASDDRGIDVV-RNQIKHF 96 (323)
T ss_dssp GGCCSCTHHHHHHHHHHH-SCCCCCEEEECSTTSSHHHHHHHHHHHHH--GGGHHHHEEEECTTSCCSHHHH-HTHHHHH
T ss_pred HHHHCCHHHHHHHHHHHH-cCCCCeEEEECcCCCCHHHHHHHHHHHhc--CCcccCCEEEecCccccChHHH-HHHHHHH
Confidence 468999999999999998 44444499999999999999999998852 11111 2334433332222221 1111111
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHh-cCCcEEEEEccCCCc--cccccccccCCCCCCCCcEEEEeeCChHH--HhcccCCC
Q 036236 169 GLFDDSWKSKSVEEKAVDIFRSL-REKRFVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTRSIDV--CGSMESHR 243 (557)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~iliTtR~~~v--~~~~~~~~ 243 (557)
.... ..+ .+++.++|+||++.. .....+...+.....+ +.+|+||+...- ........
T Consensus 97 ~~~~----------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~-~~~il~~~~~~~l~~~l~sr~~ 159 (323)
T 1sxj_B 97 AQKK----------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNS-TRFAFACNQSNKIIEPLQSQCA 159 (323)
T ss_dssp HHBC----------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTT-EEEEEEESCGGGSCHHHHTTSE
T ss_pred Hhcc----------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCC-ceEEEEeCChhhchhHHHhhce
Confidence 0000 001 345889999999653 2233343333322233 778888876432 11112234
Q ss_pred ceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchH-HHHHH
Q 036236 244 KFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLA-LLTIG 296 (557)
Q Consensus 244 ~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa-i~~~~ 296 (557)
.+.+.+++.++..+++...+.......+ .+....|++.++|.|.. +..+.
T Consensus 160 ~i~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 160 ILRYSKLSDEDVLKRLLQIIKLEDVKYT---NDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred EEeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 7899999999999999887643221111 25678899999999954 44443
No 60
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.10 E-value=1.3e-10 Score=116.60 Aligned_cols=120 Identities=22% Similarity=0.285 Sum_probs=100.9
Q ss_pred EEEcCCCcccCCcccccccceEEEccccccccccCC--C-CCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCC
Q 036236 434 LVRAGAGLKEAPAVKGWENVRRLSLMQNQIETLSEV--P-TCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGN 510 (557)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~--~-~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~ 510 (557)
+...+.++..+|. .-...++.|++++|.+..++.. . .+++|+.|+|++|. +..++...|.++++|++|+|++| .
T Consensus 23 l~c~~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N-~ 99 (361)
T 2xot_A 23 LSCSKQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSN-H 99 (361)
T ss_dssp EECCSSCCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-C
T ss_pred EEeCCCCcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCC-c
Confidence 3334555666664 2335689999999999987664 3 89999999999998 88888777999999999999999 8
Q ss_pred CccCCc-cccCCCCCCeeeccCCCCccc-ChHHHhHhhhhhcCCCCCC
Q 036236 511 IFQLPV-GMSKLGSLELLDISHTFIKEL-PEELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 511 ~~~lP~-~i~~L~~L~~L~l~~n~l~~l-P~~i~~L~~L~~L~~~~~~ 556 (557)
++.+|. .+..|.+|++|+|++|+|+.+ |..+.++++|++|++++++
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~ 147 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ 147 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc
Confidence 998865 689999999999999999987 5679999999999998765
No 61
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.10 E-value=4.2e-10 Score=99.77 Aligned_cols=102 Identities=19% Similarity=0.260 Sum_probs=90.2
Q ss_pred cceEEEccccccccccCCCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCcc-ccCCCCCCeeecc
Q 036236 452 NVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVG-MSKLGSLELLDIS 530 (557)
Q Consensus 452 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~-i~~L~~L~~L~l~ 530 (557)
..+.+++++|.+..+|... .++|+.|+|++|. +..+++..|..+++|++|+|++| .++.+|.. +..+++|++|+|+
T Consensus 10 ~~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC-CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCccCccC-CCCCcEEEcCCCc-CCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECC
Confidence 3568999999999988654 4899999999998 88887666999999999999999 89999875 5899999999999
Q ss_pred CCCCcccChH-HHhHhhhhhcCCCCCC
Q 036236 531 HTFIKELPEE-LKKLLEAIQRAPRPDR 556 (557)
Q Consensus 531 ~n~l~~lP~~-i~~L~~L~~L~~~~~~ 556 (557)
+|+|+.+|.. +.++++|++|+++++.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 9999999885 8999999999998874
No 62
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.10 E-value=3.1e-09 Score=104.72 Aligned_cols=272 Identities=14% Similarity=0.086 Sum_probs=141.1
Q ss_pred CcccchhHHHHHHHHHHhc----cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHH
Q 036236 90 PTIVGLQSQLEQVWRCLVV----EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIG 165 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~----~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 165 (557)
..|+|++..++.+..++.. ......+.|+|++|+|||++|+.+++.. ... .+++..+.......+...+
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~---~~~---~~~~~~~~~~~~~~l~~~l- 84 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL---GVN---LRVTSGPAIEKPGDLAAIL- 84 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH---TCC---EEEECTTTCCSHHHHHHHH-
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh---CCC---EEEEeccccCChHHHHHHH-
Confidence 5799999999998888762 2345678999999999999999999876 222 2344333322222221111
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCcc--ccccccccCCC--------C----------CCCCcE
Q 036236 166 KKIGLFDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWERV--DLTKVGVPLPG--------P----------QNTTSK 225 (557)
Q Consensus 166 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~~~l~~--------~----------~~~~s~ 225 (557)
... ..+..+|+||+++... ....+...+.. . ... .+
T Consensus 85 ----------------------~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~-~~ 140 (324)
T 1hqc_A 85 ----------------------ANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPR-FT 140 (324)
T ss_dssp ----------------------TTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCC-CE
T ss_pred ----------------------HHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCC-EE
Confidence 000 1245688888886432 11111110000 0 012 56
Q ss_pred EEEeeCChHH-Hhcc-cC-CCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHHHHHhccC
Q 036236 226 VVFTTRSIDV-CGSM-ES-HRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTIGRAMACK 302 (557)
Q Consensus 226 iliTtR~~~v-~~~~-~~-~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~ 302 (557)
+|.||..... ...+ .. ...+.+.+++.++..+++...+........ .+....+++.++|+|..+..+...+...
T Consensus 141 ~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~r~l~~~l~~~~~~ 217 (324)
T 1hqc_A 141 LIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRIT---EEAALEIGRRSRGTMRVAKRLFRRVRDF 217 (324)
T ss_dssp EEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHSCSCHHHHHHHHHHHTTT
T ss_pred EEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 6666664321 1111 11 247899999999999999887754332222 3567889999999998887766544211
Q ss_pred --------CCHHHHHHHHHHHHhcccccCCchhhHhhhHhhhhccCCCcchhHHHhhhccCCCCcccCHHHHHH----HH
Q 036236 303 --------RTAEEWRHAVEVLRRSASEFAGLGEKVYSLLKFSYDSLQNETIKSCFLYCCLYPEDYGILKWDLID----CW 370 (557)
Q Consensus 303 --------~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~~~l~~~~fp~~~~i~~~~li~----~w 370 (557)
-+.+....+...+......+...+..+...+...|..-+. ....+-..++ +++..+.+ +-
T Consensus 218 a~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~e~~~i~~~~~~~~g~~~-~~~~~a~~lg-------i~~~tl~~~l~~~~ 289 (324)
T 1hqc_A 218 AQVAGEEVITRERALEALAALGLDELGLEKRDREILEVLILRFGGGPV-GLATLATALS-------EDPGTLEEVHEPYL 289 (324)
T ss_dssp STTTSCSCCCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHSCSSCC-CHHHHHHHTT-------SCHHHHHHHTHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHhcCCCc-hHHHHHHHhC-------CCHHHHHHHHhHHH
Confidence 2344454444433211111111111222222222222111 2233333332 23333222 34
Q ss_pred HhcCCccccc-chhHHHHHHHHHH-HHHHhccccc
Q 036236 371 IGEGFLEQSD-RLSAEYQGYYIVG-TLVQACLLEE 403 (557)
Q Consensus 371 ~a~g~i~~~~-~~~~~~~~~~~l~-~L~~~sll~~ 403 (557)
+..|++.... +....+.+..+++ ++.+|+|||+
T Consensus 290 i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 290 IRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 5567775432 2355677777787 7888888774
No 63
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.09 E-value=1.1e-10 Score=111.45 Aligned_cols=109 Identities=17% Similarity=0.183 Sum_probs=96.2
Q ss_pred cccCCcccccccceEEEccccccccccCCCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCccccC
Q 036236 441 LKEAPAVKGWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVGMSK 520 (557)
Q Consensus 441 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~i~~ 520 (557)
+..++.+..+++++.|++++|.+..++....+++|+.|++++|. +..+|. +..+++|++|+|++| .++.+|....
T Consensus 31 i~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~-i~~~~~--l~~l~~L~~L~L~~N-~l~~l~~~~~- 105 (263)
T 1xeu_A 31 VTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQ-ISDLSP--LKDLTKLEELSVNRN-RLKNLNGIPS- 105 (263)
T ss_dssp TTSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSC-CCCCGG--GTTCSSCCEEECCSS-CCSCCTTCCC-
T ss_pred cccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCc-cCCChh--hccCCCCCEEECCCC-ccCCcCcccc-
Confidence 34445566778999999999999999877899999999999998 888887 889999999999999 8999986544
Q ss_pred CCCCCeeeccCCCCcccChHHHhHhhhhhcCCCCCC
Q 036236 521 LGSLELLDISHTFIKELPEELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 521 L~~L~~L~l~~n~l~~lP~~i~~L~~L~~L~~~~~~ 556 (557)
.+|++|+|++|+++.+| .++++++|++|++++++
T Consensus 106 -~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~ 139 (263)
T 1xeu_A 106 -ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK 139 (263)
T ss_dssp -SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC
T ss_pred -CcccEEEccCCccCCCh-hhcCcccccEEECCCCc
Confidence 99999999999999987 59999999999998875
No 64
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.09 E-value=2.3e-10 Score=122.04 Aligned_cols=115 Identities=21% Similarity=0.276 Sum_probs=82.4
Q ss_pred EEcCCCcccCCcccccccceEEEccccccccccCCCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccC
Q 036236 435 VRAGAGLKEAPAVKGWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQL 514 (557)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~l 514 (557)
...+..+..++.+..+++|+.|++++|.+..++....+++|+.|+|++|. +..++ . +..+++|+.|+|++| .+..+
T Consensus 93 ~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~-l~~l~-~-l~~l~~L~~L~Ls~N-~l~~~ 168 (605)
T 1m9s_A 93 FLDENKIKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNK-ITDIT-V-LSRLTKLDTLSLEDN-QISDI 168 (605)
T ss_dssp ECCSSCCCCCTTSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSC-CCCCG-G-GGSCTTCSEEECCSS-CCCCC
T ss_pred ECcCCCCCCChhhccCCCCCEEEecCCCCCCCccccCCCccCEEECCCCc-cCCch-h-hcccCCCCEEECcCC-cCCCc
Confidence 33444555566666777777777777777777666777777777777776 65553 2 777778888888877 77766
Q ss_pred CccccCCCCCCeeeccCCCCcccChHHHhHhhhhhcCCCCC
Q 036236 515 PVGMSKLGSLELLDISHTFIKELPEELKKLLEAIQRAPRPD 555 (557)
Q Consensus 515 P~~i~~L~~L~~L~l~~n~l~~lP~~i~~L~~L~~L~~~~~ 555 (557)
|+ ++.|++|+.|+|++|+|+.+| .+..|++|+.|+++++
T Consensus 169 ~~-l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 169 VP-LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQ 207 (605)
T ss_dssp GG-GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSE
T ss_pred hh-hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCC
Confidence 55 777888888888888877775 4777778887777654
No 65
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.08 E-value=9.9e-11 Score=117.09 Aligned_cols=101 Identities=26% Similarity=0.312 Sum_probs=49.1
Q ss_pred cceEEEccccccccccC--CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCcc-ccCCCCCCeee
Q 036236 452 NVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVG-MSKLGSLELLD 528 (557)
Q Consensus 452 ~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~-i~~L~~L~~L~ 528 (557)
++++|++++|.+..++. ...+++|+.|++++|. +..++...|.++++|++|+|++| .++.+|.. ++++++|++|+
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEEE
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc-cCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEEE
Confidence 45555555555544433 2445555555555554 44443333445555555555555 44444443 44555555555
Q ss_pred ccCCCCcccCh--HHHhHhhhhhcCCCC
Q 036236 529 ISHTFIKELPE--ELKKLLEAIQRAPRP 554 (557)
Q Consensus 529 l~~n~l~~lP~--~i~~L~~L~~L~~~~ 554 (557)
|++|+++.+|. .+.++++|++|++++
T Consensus 131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~ 158 (353)
T 2z80_A 131 LLGNPYKTLGETSLFSHLTKLQILRVGN 158 (353)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEE
T ss_pred CCCCCCcccCchhhhccCCCCcEEECCC
Confidence 55555555544 344455555444433
No 66
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.08 E-value=2.3e-10 Score=122.15 Aligned_cols=109 Identities=25% Similarity=0.366 Sum_probs=82.4
Q ss_pred cccccccceEEEccccccccccC--CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCc-cccCCC
Q 036236 446 AVKGWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPV-GMSKLG 522 (557)
Q Consensus 446 ~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~-~i~~L~ 522 (557)
.+..++++++|++++|.+..++. +.++++|++|++++|. +..+|+..|+++++|++|++++| .++.+|. .+++|+
T Consensus 47 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~ 124 (570)
T 2z63_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLK 124 (570)
T ss_dssp TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTS-CCCCSTTCSCTTCT
T ss_pred HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc-CCccCHhhhcCcccccccccccc-ccccCCCccccccc
Confidence 45567778888888887776653 3677888888888887 66666555778888888888888 7777765 688888
Q ss_pred CCCeeeccCCCCcc--cChHHHhHhhhhhcCCCCCC
Q 036236 523 SLELLDISHTFIKE--LPEELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 523 ~L~~L~l~~n~l~~--lP~~i~~L~~L~~L~~~~~~ 556 (557)
+|++|++++|.++. +|..+++|++|++|++++++
T Consensus 125 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~ 160 (570)
T 2z63_A 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160 (570)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC
T ss_pred cccEEecCCCccceecChhhhcccCCCCEEeCcCCc
Confidence 88888888888774 67888888888888877653
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.07 E-value=1.9e-10 Score=111.37 Aligned_cols=109 Identities=19% Similarity=0.258 Sum_probs=91.0
Q ss_pred cccccccceEEEccccccccccC--CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCc-cccCCC
Q 036236 446 AVKGWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPV-GMSKLG 522 (557)
Q Consensus 446 ~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~-~i~~L~ 522 (557)
.+..+++++.|++++|.+..++. ...+++|+.|++++|. +..++...+..+++|++|+|++| .++.+|. .+..++
T Consensus 100 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~ 177 (285)
T 1ozn_A 100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLH 177 (285)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCT
T ss_pred HhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCC-cccccCHHHhcCcc
Confidence 35667889999999998887644 3678899999999988 77788776888999999999999 8888876 588899
Q ss_pred CCCeeeccCCCCccc-ChHHHhHhhhhhcCCCCCC
Q 036236 523 SLELLDISHTFIKEL-PEELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 523 ~L~~L~l~~n~l~~l-P~~i~~L~~L~~L~~~~~~ 556 (557)
+|++|+|++|.++.+ |..+.++++|+.|++++++
T Consensus 178 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 212 (285)
T 1ozn_A 178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212 (285)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred ccCEEECCCCcccccCHhHccCcccccEeeCCCCc
Confidence 999999999998876 7788899999999888764
No 68
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.07 E-value=1.4e-10 Score=109.15 Aligned_cols=106 Identities=17% Similarity=0.287 Sum_probs=73.9
Q ss_pred ccccccceEEEccccc-cccccC--CCCCCCccEEEccc-ccccccccchHhhcCCCCcEEEeecCCCCccCCccccCCC
Q 036236 447 VKGWENVRRLSLMQNQ-IETLSE--VPTCPHLLTLFLDF-NQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVGMSKLG 522 (557)
Q Consensus 447 ~~~~~~l~~l~l~~~~-~~~~~~--~~~~~~L~~L~l~~-~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~i~~L~ 522 (557)
+..+++++.|++++|. +..++. +..+++|+.|++++ |. +..+|...|..+++|++|++++| .++.+|. ++.+.
T Consensus 51 ~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~-l~~i~~~~f~~l~~L~~L~l~~n-~l~~lp~-~~~l~ 127 (239)
T 2xwt_C 51 FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN-LTYIDPDALKELPLLKFLGIFNT-GLKMFPD-LTKVY 127 (239)
T ss_dssp TTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT-CCEECTTSEECCTTCCEEEEEEE-CCCSCCC-CTTCC
T ss_pred ccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC-eeEcCHHHhCCCCCCCEEeCCCC-CCccccc-ccccc
Confidence 5566777777777775 666654 25677777777777 55 66777655777777777777777 6777775 66666
Q ss_pred CCC---eeeccCC-CCcccChH-HHhHhhhh-hcCCCCC
Q 036236 523 SLE---LLDISHT-FIKELPEE-LKKLLEAI-QRAPRPD 555 (557)
Q Consensus 523 ~L~---~L~l~~n-~l~~lP~~-i~~L~~L~-~L~~~~~ 555 (557)
+|+ +|++++| .++.+|.. +.++++|+ .|+++++
T Consensus 128 ~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n 166 (239)
T 2xwt_C 128 STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN 166 (239)
T ss_dssp BCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC
T ss_pred ccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC
Confidence 666 7777777 77776654 66777777 7766554
No 69
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.06 E-value=1.9e-10 Score=116.73 Aligned_cols=107 Identities=20% Similarity=0.348 Sum_probs=66.8
Q ss_pred ccccccceEEEccccccccccC--CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCcc-ccCCCC
Q 036236 447 VKGWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVG-MSKLGS 523 (557)
Q Consensus 447 ~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~-i~~L~~ 523 (557)
+..+++++.|++++|.+..++. ...+++|++|++++|. +..+|+..|+++++|++|+|++| .++.+|.. ++++++
T Consensus 65 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~ 142 (390)
T 3o6n_A 65 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPK 142 (390)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCCCCEEECCCC-ccCcCCHHHhcCCCC
Confidence 3445666666666666665543 3566666666666666 55555554666666666666666 66666655 366666
Q ss_pred CCeeeccCCCCcccCh-HHHhHhhhhhcCCCCC
Q 036236 524 LELLDISHTFIKELPE-ELKKLLEAIQRAPRPD 555 (557)
Q Consensus 524 L~~L~l~~n~l~~lP~-~i~~L~~L~~L~~~~~ 555 (557)
|++|+|++|.++.+|. .++++++|++|+++++
T Consensus 143 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 175 (390)
T 3o6n_A 143 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 175 (390)
T ss_dssp CCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS
T ss_pred CcEEECCCCccCccChhhccCCCCCCEEECCCC
Confidence 6666666666666543 3666666666666554
No 70
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.06 E-value=2.1e-10 Score=122.35 Aligned_cols=115 Identities=23% Similarity=0.310 Sum_probs=89.5
Q ss_pred EcCCCcccCCcccccccceEEEccccccccccCCCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCC
Q 036236 436 RAGAGLKEAPAVKGWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLP 515 (557)
Q Consensus 436 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP 515 (557)
..+..+..++.+..+++|+.|+|++|.+..++....+++|+.|+|++|. +..++. +..+++|+.|+|++| .+..+
T Consensus 72 Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~-l~~l~~--l~~l~~L~~L~Ls~N-~l~~l- 146 (605)
T 1m9s_A 72 LNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNG-ISDING--LVHLPQLESLYLGNN-KITDI- 146 (605)
T ss_dssp CTTSCCCCCGGGGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSC-CCCCGG--GGGCTTCSEEECCSS-CCCCC-
T ss_pred eeCCCCCCChhhccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCC-CCCCcc--ccCCCccCEEECCCC-ccCCc-
Confidence 3444555555577778888888888888888777888888888888887 666653 778888888888888 77777
Q ss_pred ccccCCCCCCeeeccCCCCcccChHHHhHhhhhhcCCCCCC
Q 036236 516 VGMSKLGSLELLDISHTFIKELPEELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 516 ~~i~~L~~L~~L~l~~n~l~~lP~~i~~L~~L~~L~~~~~~ 556 (557)
..++.|++|++|+|++|.|+.+|+ +..|++|+.|++++++
T Consensus 147 ~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 147 TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCC
Confidence 578888888888888888888766 8888888888887764
No 71
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.06 E-value=2.7e-10 Score=103.23 Aligned_cols=99 Identities=17% Similarity=0.198 Sum_probs=87.6
Q ss_pred eEEEccccccccccCCCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCC-ccccCCCCCCeeeccCC
Q 036236 454 RRLSLMQNQIETLSEVPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLP-VGMSKLGSLELLDISHT 532 (557)
Q Consensus 454 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP-~~i~~L~~L~~L~l~~n 532 (557)
+.+++++|.+..+|... .++|+.|++++|. +..+|.. |..+++|++|+|++| .++.+| ..|..|++|++|+|++|
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~-i~~ip~~-~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQ-FTLVPKE-LSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSSC-CCSCCGG-GGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCCc-CchhHHH-hhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCC
Confidence 57889999999888643 4789999999998 8899965 999999999999999 899886 47999999999999999
Q ss_pred CCcccCh-HHHhHhhhhhcCCCCCC
Q 036236 533 FIKELPE-ELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 533 ~l~~lP~-~i~~L~~L~~L~~~~~~ 556 (557)
+|+.+|. .+..+++|++|++++++
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~ 113 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGND 113 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCC
Confidence 9999876 58999999999998765
No 72
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.06 E-value=2.8e-10 Score=122.53 Aligned_cols=108 Identities=23% Similarity=0.346 Sum_probs=76.1
Q ss_pred ccccccceEEEccccccccccC--CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCC-ccccCCCC
Q 036236 447 VKGWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLP-VGMSKLGS 523 (557)
Q Consensus 447 ~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP-~~i~~L~~ 523 (557)
+..++++++|++++|.+..++. +.++++|++|++++|. +..+++..|+++++|++|+|++| .+..+| ..++++++
T Consensus 52 ~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~ 129 (606)
T 3vq2_A 52 FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP-IQSFSPGSFSGLTSLENLVAVET-KLASLESFPIGQLIT 129 (606)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCCCCTTSSTTCTTCCEEECTTS-CCCCSSSSCCTTCTT
T ss_pred ccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc-ccccChhhcCCcccCCEEEccCC-ccccccccccCCCCC
Confidence 5566777777777777766533 3677777777777776 55554333777777777777777 676665 56777777
Q ss_pred CCeeeccCCCCc--ccChHHHhHhhhhhcCCCCCC
Q 036236 524 LELLDISHTFIK--ELPEELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 524 L~~L~l~~n~l~--~lP~~i~~L~~L~~L~~~~~~ 556 (557)
|++|++++|.++ .+|..++++++|++|++++++
T Consensus 130 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp CCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred CCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence 777777777776 467777777777777776653
No 73
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.06 E-value=2e-10 Score=104.15 Aligned_cols=101 Identities=16% Similarity=0.217 Sum_probs=88.1
Q ss_pred ceEEEccccccccccCCCCCCCccEEEcccccccccccch-HhhcCCCCcEEEeecCCCCccC-CccccCCCCCCeeecc
Q 036236 453 VRRLSLMQNQIETLSEVPTCPHLLTLFLDFNQELEMIADG-FFQFMPSLKVLKISNCGNIFQL-PVGMSKLGSLELLDIS 530 (557)
Q Consensus 453 l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~-~~~~l~~L~~L~Ls~~~~~~~l-P~~i~~L~~L~~L~l~ 530 (557)
.+.+++++|.+..+|... ..+|+.|++++|. +..++.. +|..+++|++|+|++| .++.+ |..++.+.+|++|+|+
T Consensus 10 ~~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDI-PLHTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECC
T ss_pred CCEEEcCCCCcCcCccCC-CCCCCEEECCCCc-CCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECC
Confidence 368899999999888743 3499999999998 7777763 5899999999999999 88877 7899999999999999
Q ss_pred CCCCcccChH-HHhHhhhhhcCCCCCC
Q 036236 531 HTFIKELPEE-LKKLLEAIQRAPRPDR 556 (557)
Q Consensus 531 ~n~l~~lP~~-i~~L~~L~~L~~~~~~ 556 (557)
+|+|+.+|.. +.++++|++|++++++
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQ 113 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCc
Confidence 9999998765 8999999999998875
No 74
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.05 E-value=2.3e-10 Score=122.83 Aligned_cols=106 Identities=20% Similarity=0.346 Sum_probs=62.5
Q ss_pred cccccceEEEccccccccccC--CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCcc-ccCCCCC
Q 036236 448 KGWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVG-MSKLGSL 524 (557)
Q Consensus 448 ~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~-i~~L~~L 524 (557)
..+++++.|++++|.+..++. +..+++|++|+|++|. +..+|+..|+++++|++|+|++| .++.+|.. ++++++|
T Consensus 72 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L 149 (597)
T 3oja_B 72 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKL 149 (597)
T ss_dssp HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred ccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhccCCCC
Confidence 345566666666666655442 3556666666666665 55555554566666666666666 56666554 3566666
Q ss_pred CeeeccCCCCcccCh-HHHhHhhhhhcCCCCC
Q 036236 525 ELLDISHTFIKELPE-ELKKLLEAIQRAPRPD 555 (557)
Q Consensus 525 ~~L~l~~n~l~~lP~-~i~~L~~L~~L~~~~~ 555 (557)
++|+|++|.++.+|+ .++++++|++|+++++
T Consensus 150 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 181 (597)
T 3oja_B 150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 181 (597)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECTTS
T ss_pred CEEEeeCCcCCCCChhhhhcCCcCcEEECcCC
Confidence 666666666665543 3566666666665554
No 75
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.04 E-value=2.8e-10 Score=122.49 Aligned_cols=120 Identities=20% Similarity=0.153 Sum_probs=102.7
Q ss_pred EEEcCCCcccCCcccccccceEEEccccccccccC--CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCC
Q 036236 434 LVRAGAGLKEAPAVKGWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNI 511 (557)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~ 511 (557)
+...+.+++.+|.. -.+++++|++++|.+..++. ..++++|++|++++|. +..+++..|.++++|++|+|++| .+
T Consensus 16 ~~c~~~~l~~ip~~-~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~i~~~~~~~l~~L~~L~Ls~n-~l 92 (606)
T 3vq2_A 16 YQCMDQKLSKVPDD-IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE-IETIEDKAWHGLHHLSNLILTGN-PI 92 (606)
T ss_dssp EECTTSCCSSCCTT-SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTC-CC
T ss_pred eEccCCCcccCCCC-CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCc-ccccCHHHhhchhhcCEeECCCC-cc
Confidence 33455566777652 23789999999999988765 4799999999999998 77887666999999999999999 78
Q ss_pred ccC-CccccCCCCCCeeeccCCCCcccC-hHHHhHhhhhhcCCCCCC
Q 036236 512 FQL-PVGMSKLGSLELLDISHTFIKELP-EELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 512 ~~l-P~~i~~L~~L~~L~l~~n~l~~lP-~~i~~L~~L~~L~~~~~~ 556 (557)
..+ |..|++|++|++|+|++|.++.+| ..++++++|++|+++++.
T Consensus 93 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 139 (606)
T 3vq2_A 93 QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF 139 (606)
T ss_dssp CCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSC
T ss_pred cccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCc
Confidence 877 889999999999999999999887 679999999999998764
No 76
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.04 E-value=2.2e-10 Score=120.92 Aligned_cols=118 Identities=19% Similarity=0.261 Sum_probs=96.9
Q ss_pred EEEcCCCcccCCcccccccceEEEccccccccccC--CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCC
Q 036236 434 LVRAGAGLKEAPAVKGWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNI 511 (557)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~ 511 (557)
+...+..+..+|..- .+++++|++++|.+..++. ...+++|++|++++|. +..+++..|.++++|++|+|++| .+
T Consensus 5 l~ls~n~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N-~l 81 (520)
T 2z7x_B 5 VDRSKNGLIHVPKDL-SQKTTILNISQNYISELWTSDILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLSHN-KL 81 (520)
T ss_dssp EECTTSCCSSCCCSC-CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSC-CCEEEGGGGTTCTTCCEEECCSS-CC
T ss_pred EecCCCCcccccccc-cccccEEECCCCcccccChhhccccccccEEecCCCc-cCCcChHHhhcccCCCEEecCCC-ce
Confidence 344555666666422 2789999999999988753 4889999999999998 77775555999999999999999 89
Q ss_pred ccCCccccCCCCCCeeeccCCCCcc--cChHHHhHhhhhhcCCCCCC
Q 036236 512 FQLPVGMSKLGSLELLDISHTFIKE--LPEELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 512 ~~lP~~i~~L~~L~~L~l~~n~l~~--lP~~i~~L~~L~~L~~~~~~ 556 (557)
+.+|.. .+++|++|+|++|.++. +|..+++|++|++|++++++
T Consensus 82 ~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~ 126 (520)
T 2z7x_B 82 VKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH 126 (520)
T ss_dssp CEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS
T ss_pred eecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc
Confidence 999987 89999999999999986 67899999999999887653
No 77
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.03 E-value=4.6e-10 Score=115.80 Aligned_cols=107 Identities=23% Similarity=0.370 Sum_probs=67.8
Q ss_pred ccccccceEEEccccccccccC--CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCccccCCCCC
Q 036236 447 VKGWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVGMSKLGSL 524 (557)
Q Consensus 447 ~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~i~~L~~L 524 (557)
+..+++|+.|++++|.+..++. +..+++|+.|++++|+.+..++...|.++++|++|+|++| .++.+| .+..+++|
T Consensus 132 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L 209 (440)
T 3zyj_A 132 FVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIP-NLTPLIKL 209 (440)
T ss_dssp SCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCC-CCTTCSSC
T ss_pred hhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCcccc-ccCCCccc
Confidence 5566777777777777766654 2566677777777655566666655666677777777666 666666 35666666
Q ss_pred CeeeccCCCCccc-ChHHHhHhhhhhcCCCCC
Q 036236 525 ELLDISHTFIKEL-PEELKKLLEAIQRAPRPD 555 (557)
Q Consensus 525 ~~L~l~~n~l~~l-P~~i~~L~~L~~L~~~~~ 555 (557)
++|+|++|.|+.+ |..+.++++|+.|+++++
T Consensus 210 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n 241 (440)
T 3zyj_A 210 DELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS 241 (440)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CEEECCCCccCccChhhhccCccCCEEECCCC
Confidence 6666666666654 344555555555555443
No 78
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.03 E-value=2.2e-10 Score=112.44 Aligned_cols=110 Identities=15% Similarity=0.189 Sum_probs=88.1
Q ss_pred CcccccccceEEEccc-cccc-cccC-CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCc-cCCccccC
Q 036236 445 PAVKGWENVRRLSLMQ-NQIE-TLSE-VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIF-QLPVGMSK 520 (557)
Q Consensus 445 ~~~~~~~~l~~l~l~~-~~~~-~~~~-~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~-~lP~~i~~ 520 (557)
+.+..++++++|++++ |.+. .+|. ...+++|++|++++|...+.+|.. +.++++|++|+|++| .+. .+|..++.
T Consensus 70 ~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~Ls~N-~l~~~~p~~~~~ 147 (313)
T 1ogq_A 70 SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-LSQIKTLVTLDFSYN-ALSGTLPPSISS 147 (313)
T ss_dssp GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGG-GGGCTTCCEEECCSS-EEESCCCGGGGG
T ss_pred hhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHH-HhCCCCCCEEeCCCC-ccCCcCChHHhc
Confidence 3567788899999984 7775 3443 478889999999988833466766 888999999999998 676 78888999
Q ss_pred CCCCCeeeccCCCCc-ccChHHHhHh-hhhhcCCCCCC
Q 036236 521 LGSLELLDISHTFIK-ELPEELKKLL-EAIQRAPRPDR 556 (557)
Q Consensus 521 L~~L~~L~l~~n~l~-~lP~~i~~L~-~L~~L~~~~~~ 556 (557)
+++|++|+|++|+++ .+|..+++++ +|++|+++.++
T Consensus 148 l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~ 185 (313)
T 1ogq_A 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185 (313)
T ss_dssp CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred CCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe
Confidence 999999999999888 7888898887 88888887653
No 79
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.02 E-value=3.7e-10 Score=114.58 Aligned_cols=105 Identities=22% Similarity=0.231 Sum_probs=80.0
Q ss_pred cccceEEEccccccccccCCCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCccccCCCCCCeeec
Q 036236 450 WENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVGMSKLGSLELLDI 529 (557)
Q Consensus 450 ~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~i~~L~~L~~L~l 529 (557)
..+++.|++++|.+...+....+++|+.|++++|. +..+++..+..+++|++|+|++| .++.+|..++.+++|++|+|
T Consensus 225 ~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L 302 (390)
T 3o6n_A 225 NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDL 302 (390)
T ss_dssp CSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEEC
T ss_pred cccccEEECCCCCCcccHHHcCCCCccEEECCCCc-CCCcChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEEC
Confidence 35677788888877777666777888888888887 55554444777888888888888 77778777777888888888
Q ss_pred cCCCCcccChHHHhHhhhhhcCCCCCC
Q 036236 530 SHTFIKELPEELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 530 ~~n~l~~lP~~i~~L~~L~~L~~~~~~ 556 (557)
++|+++.+|..+..+++|+.|++++++
T Consensus 303 ~~n~l~~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 303 SHNHLLHVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp CSSCCCCCGGGHHHHTTCSEEECCSSC
T ss_pred CCCcceecCccccccCcCCEEECCCCc
Confidence 888888888888888888877777654
No 80
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.02 E-value=3.8e-10 Score=120.26 Aligned_cols=119 Identities=23% Similarity=0.262 Sum_probs=99.5
Q ss_pred EEEEcCCCcccCCcccccccceEEEccccccccccC--CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCC
Q 036236 433 FLVRAGAGLKEAPAVKGWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGN 510 (557)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~ 510 (557)
.+...+.+++.+|.. -.+++++|++++|.+..++. ...+++|++|++++|. +..+++..|.++++|++|+|++| .
T Consensus 35 ~l~ls~~~L~~ip~~-~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~ 111 (562)
T 3a79_B 35 MVDYSNRNLTHVPKD-LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEYLDVSHN-R 111 (562)
T ss_dssp EEECTTSCCCSCCTT-SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECTTS-C
T ss_pred EEEcCCCCCccCCCC-CCCCcCEEECCCCCccccChhhhccCCCccEEECCCCC-CCcCCHHHhCCCCCCCEEECCCC-c
Confidence 444556666666652 23789999999999988763 4889999999999998 77776666999999999999999 8
Q ss_pred CccCCccccCCCCCCeeeccCCCCcccC--hHHHhHhhhhhcCCCCCC
Q 036236 511 IFQLPVGMSKLGSLELLDISHTFIKELP--EELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 511 ~~~lP~~i~~L~~L~~L~l~~n~l~~lP--~~i~~L~~L~~L~~~~~~ 556 (557)
++.+|.. .+++|++|+|++|+++.+| ..++++++|++|++++++
T Consensus 112 l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~ 157 (562)
T 3a79_B 112 LQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK 157 (562)
T ss_dssp CCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred CCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc
Confidence 9999987 8999999999999999765 789999999999887653
No 81
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.02 E-value=1.9e-10 Score=112.98 Aligned_cols=108 Identities=13% Similarity=0.225 Sum_probs=92.3
Q ss_pred cccccccceEEEccccccc-cccC-CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCc-cCCccccCCC
Q 036236 446 AVKGWENVRRLSLMQNQIE-TLSE-VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIF-QLPVGMSKLG 522 (557)
Q Consensus 446 ~~~~~~~l~~l~l~~~~~~-~~~~-~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~-~lP~~i~~L~ 522 (557)
.+..++++++|++++|.+. .+|. ...+++|++|++++|...+.+|.. +..+++|++|+|++| .++ .+|..++.+.
T Consensus 96 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~ 173 (313)
T 1ogq_A 96 AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS-ISSLPNLVGITFDGN-RISGAIPDSYGSFS 173 (313)
T ss_dssp GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGG-GGGCTTCCEEECCSS-CCEEECCGGGGCCC
T ss_pred hHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChH-HhcCCCCCeEECcCC-cccCcCCHHHhhhh
Confidence 4678889999999999997 4554 478999999999999843467766 889999999999999 777 8899999998
Q ss_pred -CCCeeeccCCCCc-ccChHHHhHhhhhhcCCCCCC
Q 036236 523 -SLELLDISHTFIK-ELPEELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 523 -~L~~L~l~~n~l~-~lP~~i~~L~~L~~L~~~~~~ 556 (557)
+|++|+|++|+++ .+|..++.++ |+.|++++++
T Consensus 174 ~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 174 KLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp TTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred hcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 9999999999988 6899999987 9999988763
No 82
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.01 E-value=5.9e-12 Score=114.94 Aligned_cols=113 Identities=25% Similarity=0.346 Sum_probs=75.2
Q ss_pred CcccCCcccccccceEEEccccccccccCC-CCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCc--
Q 036236 440 GLKEAPAVKGWENVRRLSLMQNQIETLSEV-PTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPV-- 516 (557)
Q Consensus 440 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~-- 516 (557)
.+..++.+..+++++.|++++|.+..+|.. ..+++|+.|++++|. +..+| . +..+++|++|+|++| .++.+|.
T Consensus 59 ~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~-~~~l~~L~~L~l~~N-~i~~~~~~~ 134 (198)
T 1ds9_A 59 NIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLS-G-IEKLVNLRVLYMSNN-KITNWGEID 134 (198)
T ss_dssp EESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCHH-H-HHHHHHSSEEEESEE-ECCCHHHHH
T ss_pred CCccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcCC-c-cccCCCCCEEECCCC-cCCchhHHH
Confidence 344455556666777777777777666554 344677777777776 66665 3 667777777777777 6776654
Q ss_pred cccCCCCCCeeeccCCCCcccChH-----------HHhHhhhhhcCCCCCC
Q 036236 517 GMSKLGSLELLDISHTFIKELPEE-----------LKKLLEAIQRAPRPDR 556 (557)
Q Consensus 517 ~i~~L~~L~~L~l~~n~l~~lP~~-----------i~~L~~L~~L~~~~~~ 556 (557)
.++.+++|++|++++|.+...++. +.++++|++|+.+++.
T Consensus 135 ~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~~~i~ 185 (198)
T 1ds9_A 135 KLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVD 185 (198)
T ss_dssp HHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECCGGGT
T ss_pred HHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECCcccC
Confidence 677777777777777777654322 6777777777766553
No 83
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.01 E-value=3.1e-10 Score=111.67 Aligned_cols=102 Identities=16% Similarity=0.172 Sum_probs=46.0
Q ss_pred cccceEEEccccccccccCC---CCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCccccCCCCCCe
Q 036236 450 WENVRRLSLMQNQIETLSEV---PTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVGMSKLGSLEL 526 (557)
Q Consensus 450 ~~~l~~l~l~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~i~~L~~L~~ 526 (557)
+++++.|++++|.+..++.. ..+++|+.|++++|. +..+|. ...+++|++|+|++| .++.+|..+..+++|++
T Consensus 143 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~--~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~ 218 (317)
T 3o53_A 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG--QVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTW 218 (317)
T ss_dssp GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC--CCCCTTCCEEECCSS-CCCEECGGGGGGTTCSE
T ss_pred cCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Cccccc--ccccccCCEEECCCC-cCCcchhhhcccCcccE
Confidence 34444555554444432211 234444444444444 333332 122444444444444 44444444444445555
Q ss_pred eeccCCCCcccChHHHhHhhhhhcCCCCC
Q 036236 527 LDISHTFIKELPEELKKLLEAIQRAPRPD 555 (557)
Q Consensus 527 L~l~~n~l~~lP~~i~~L~~L~~L~~~~~ 555 (557)
|+|++|+++.+|..+..+++|+.|+++++
T Consensus 219 L~L~~N~l~~l~~~~~~l~~L~~L~l~~N 247 (317)
T 3o53_A 219 ISLRNNKLVLIEKALRFSQNLEHFDLRGN 247 (317)
T ss_dssp EECTTSCCCEECTTCCCCTTCCEEECTTC
T ss_pred EECcCCcccchhhHhhcCCCCCEEEccCC
Confidence 55555544444444444444444444443
No 84
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.01 E-value=6.8e-10 Score=114.96 Aligned_cols=107 Identities=28% Similarity=0.391 Sum_probs=67.9
Q ss_pred ccccccceEEEccccccccccC--CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCccccCCCCC
Q 036236 447 VKGWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVGMSKLGSL 524 (557)
Q Consensus 447 ~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~i~~L~~L 524 (557)
+..+++|+.|++++|.+..++. ...+++|+.|++++|+.+..++...|.++++|++|+|++| .++.+| .+..+.+|
T Consensus 143 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L 220 (452)
T 3zyi_A 143 FEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMP-NLTPLVGL 220 (452)
T ss_dssp SSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCC-CCTTCTTC
T ss_pred hcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-cccccc-cccccccc
Confidence 4556677777777777776654 2566677777777655566666655666677777777666 666665 45666666
Q ss_pred CeeeccCCCCccc-ChHHHhHhhhhhcCCCCC
Q 036236 525 ELLDISHTFIKEL-PEELKKLLEAIQRAPRPD 555 (557)
Q Consensus 525 ~~L~l~~n~l~~l-P~~i~~L~~L~~L~~~~~ 555 (557)
++|+|++|.++.+ |..+.++++|+.|+++++
T Consensus 221 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n 252 (452)
T 3zyi_A 221 EELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS 252 (452)
T ss_dssp CEEECTTSCCSEECGGGGTTCTTCCEEECTTS
T ss_pred cEEECcCCcCcccCcccccCccCCCEEEeCCC
Confidence 6666666666654 344556666665555544
No 85
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.00 E-value=3.6e-10 Score=116.59 Aligned_cols=109 Identities=23% Similarity=0.266 Sum_probs=96.9
Q ss_pred cccccccceEEEccccccccccCCCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccC-CccccCCCCC
Q 036236 446 AVKGWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQL-PVGMSKLGSL 524 (557)
Q Consensus 446 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~l-P~~i~~L~~L 524 (557)
.+..+++++.|++++|.+..+|....+++|+.|++++|. +..++...|.++++|+.|+|++| .++.+ |..+.++++|
T Consensus 180 ~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L 257 (440)
T 3zyj_A 180 AFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSL 257 (440)
T ss_dssp TTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTC-CCCEECTTSSTTCTTC
T ss_pred hhhcccccCeecCCCCcCccccccCCCcccCEEECCCCc-cCccChhhhccCccCCEEECCCC-ceeEEChhhhcCCCCC
Confidence 356778999999999999999998999999999999998 77776666999999999999999 88876 5689999999
Q ss_pred CeeeccCCCCcccChH-HHhHhhhhhcCCCCCC
Q 036236 525 ELLDISHTFIKELPEE-LKKLLEAIQRAPRPDR 556 (557)
Q Consensus 525 ~~L~l~~n~l~~lP~~-i~~L~~L~~L~~~~~~ 556 (557)
++|+|++|+|+.+|.. +..+++|+.|+++++.
T Consensus 258 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 258 VEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 9999999999999876 6789999999988774
No 86
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.00 E-value=6.2e-10 Score=117.53 Aligned_cols=110 Identities=20% Similarity=0.182 Sum_probs=84.5
Q ss_pred EEEcCCCcccCCcccccccceEEEccccccccccCCCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCcc
Q 036236 434 LVRAGAGLKEAPAVKGWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQ 513 (557)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~ 513 (557)
+...++.+..+|. .+++++.|++++|.+..+|. .+++|+.|++++|. +..+|. |. ++|++|+|++| .++.
T Consensus 125 L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~-L~~lp~--l~--~~L~~L~Ls~N-~L~~ 194 (571)
T 3cvr_A 125 LDVDNNQLTMLPE--LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQ-LTFLPE--LP--ESLEALDVSTN-LLES 194 (571)
T ss_dssp EECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSC-CSCCCC--CC--TTCCEEECCSS-CCSS
T ss_pred EECCCCcCCCCCC--cCccccEEeCCCCccCcCCC--cCCCcCEEECCCCC-CCCcch--hh--CCCCEEECcCC-CCCc
Confidence 3344455555665 56788888888888887776 67788888888887 777877 44 78889999888 8888
Q ss_pred CCccccCCCCC-------CeeeccCCCCcccChHHHhHhhhhhcCCCCCC
Q 036236 514 LPVGMSKLGSL-------ELLDISHTFIKELPEELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 514 lP~~i~~L~~L-------~~L~l~~n~l~~lP~~i~~L~~L~~L~~~~~~ 556 (557)
+|. ++. +| ++|+|++|+|+.+|.++.++++|++|++++++
T Consensus 195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 195 LPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp CCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSS
T ss_pred hhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCc
Confidence 887 665 77 88999999999999888888899988888764
No 87
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.99 E-value=3.3e-10 Score=113.28 Aligned_cols=107 Identities=21% Similarity=0.261 Sum_probs=69.9
Q ss_pred ccccccceEEEccccccccccC--CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCc--cccCCC
Q 036236 447 VKGWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPV--GMSKLG 522 (557)
Q Consensus 447 ~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~--~i~~L~ 522 (557)
+..+++++.|++++|.+..++. ...+++|++|++++|. +..+|...|+++++|++|+|++| .++.+|. .+++++
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~ 149 (353)
T 2z80_A 72 LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLT 149 (353)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCT
T ss_pred hccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCC
Confidence 5566677777777777666533 3566777777777776 66666665667777777777777 6666665 566677
Q ss_pred CCCeeeccCC-CCcccC-hHHHhHhhhhhcCCCCC
Q 036236 523 SLELLDISHT-FIKELP-EELKKLLEAIQRAPRPD 555 (557)
Q Consensus 523 ~L~~L~l~~n-~l~~lP-~~i~~L~~L~~L~~~~~ 555 (557)
+|++|++++| .++.+| ..++++++|++|+++++
T Consensus 150 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 150 KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred CCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence 7777777766 355553 34666666666655443
No 88
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.99 E-value=5.2e-10 Score=110.68 Aligned_cols=88 Identities=19% Similarity=0.365 Sum_probs=53.0
Q ss_pred ccceEEEcccccccccc--CCCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCccccCCCCCCeee
Q 036236 451 ENVRRLSLMQNQIETLS--EVPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVGMSKLGSLELLD 528 (557)
Q Consensus 451 ~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~i~~L~~L~~L~ 528 (557)
++++.|++++|.+..++ ....+++|+.|++++|. +..++...+..+++|++|+|++| .++.+|..+..+++|++|+
T Consensus 192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~ 269 (330)
T 1xku_A 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVY 269 (330)
T ss_dssp TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEE
T ss_pred ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CceeChhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEE
Confidence 45666666666655442 22556666666666665 54555433566666666666666 6666666666666666666
Q ss_pred ccCCCCcccChH
Q 036236 529 ISHTFIKELPEE 540 (557)
Q Consensus 529 l~~n~l~~lP~~ 540 (557)
|++|+|+.+|..
T Consensus 270 l~~N~i~~~~~~ 281 (330)
T 1xku_A 270 LHNNNISAIGSN 281 (330)
T ss_dssp CCSSCCCCCCTT
T ss_pred CCCCcCCccChh
Confidence 666666666543
No 89
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.99 E-value=1.2e-09 Score=105.03 Aligned_cols=108 Identities=23% Similarity=0.232 Sum_probs=87.0
Q ss_pred cccccccceEEEccccccccccC--CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCcc--CCccccCC
Q 036236 446 AVKGWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQ--LPVGMSKL 521 (557)
Q Consensus 446 ~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~--lP~~i~~L 521 (557)
.+..++++++|++++|.+..++. ...+++|+.|++++|. +..++...++.+++|++|+|++| .++. +|..++++
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l 148 (276)
T 2z62_A 71 AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNL 148 (276)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGC
T ss_pred HccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCC-ccceecCchhhccC
Confidence 36677889999999999887653 4788999999999988 76776644888999999999999 7775 68899999
Q ss_pred CCCCeeeccCCCCcccC-hHHHhHhhhh----hcCCCCC
Q 036236 522 GSLELLDISHTFIKELP-EELKKLLEAI----QRAPRPD 555 (557)
Q Consensus 522 ~~L~~L~l~~n~l~~lP-~~i~~L~~L~----~L~~~~~ 555 (557)
++|++|+|++|+++.+| ..+..+.+|+ .|+++++
T Consensus 149 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 99999999999998876 4677777777 4555544
No 90
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.99 E-value=4e-10 Score=110.20 Aligned_cols=107 Identities=21% Similarity=0.249 Sum_probs=78.6
Q ss_pred ccccccceEEEccccccccccC--CCCCCCccEEEccccccccc--ccchHhhcCCCCcEEEeecCCCCccC-CccccCC
Q 036236 447 VKGWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNQELEM--IADGFFQFMPSLKVLKISNCGNIFQL-PVGMSKL 521 (557)
Q Consensus 447 ~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~--~p~~~~~~l~~L~~L~Ls~~~~~~~l-P~~i~~L 521 (557)
+..+++++.|++++|.+...+. ...+++|+.|++++|. +.. +|.. +..+++|++|+|++| .++.+ |..++.+
T Consensus 122 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l 198 (306)
T 2z66_A 122 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS-FQENFLPDI-FTELRNLTFLDLSQC-QLEQLSPTAFNSL 198 (306)
T ss_dssp TTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE-EGGGEECSC-CTTCTTCCEEECTTS-CCCEECTTTTTTC
T ss_pred hhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc-cccccchhH-HhhCcCCCEEECCCC-CcCCcCHHHhcCC
Confidence 5566777788887777765432 3567788888888877 433 4554 777888888888888 77766 6678888
Q ss_pred CCCCeeeccCCCCcccCh-HHHhHhhhhhcCCCCCC
Q 036236 522 GSLELLDISHTFIKELPE-ELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 522 ~~L~~L~l~~n~l~~lP~-~i~~L~~L~~L~~~~~~ 556 (557)
++|++|+|++|.++.+|. .+..+++|++|++++++
T Consensus 199 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 199 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp TTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred CCCCEEECCCCccCccChhhccCcccCCEeECCCCC
Confidence 888888888888887765 57778888888877664
No 91
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.99 E-value=2.3e-09 Score=95.60 Aligned_cols=106 Identities=25% Similarity=0.356 Sum_probs=88.0
Q ss_pred cCCCcccCCc--ccccccceEEEccccccccccCC--CCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCc
Q 036236 437 AGAGLKEAPA--VKGWENVRRLSLMQNQIETLSEV--PTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIF 512 (557)
Q Consensus 437 ~~~~~~~~~~--~~~~~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~ 512 (557)
.+..+..++. +..+++++.|++++|.+..++.. ..+++|+.|++++|. +..+|...+..+++|++|+|++| .++
T Consensus 36 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~ 113 (177)
T 2o6r_A 36 ESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK-LQSLPNGVFDKLTQLKELALDTN-QLK 113 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCS
T ss_pred CCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC-ccccCHHHhhCCcccCEEECcCC-cce
Confidence 3444444443 56788999999999999988763 789999999999998 88888877899999999999999 899
Q ss_pred cCCcc-ccCCCCCCeeeccCCCCcccChHHHhH
Q 036236 513 QLPVG-MSKLGSLELLDISHTFIKELPEELKKL 544 (557)
Q Consensus 513 ~lP~~-i~~L~~L~~L~l~~n~l~~lP~~i~~L 544 (557)
.+|.. +..+++|++|+|++|.+...++.+..+
T Consensus 114 ~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l 146 (177)
T 2o6r_A 114 SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 146 (177)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHH
T ss_pred EeCHHHhcCCcccCEEEecCCCeeccCccHHHH
Confidence 99876 588999999999999988766555443
No 92
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.99 E-value=9.7e-10 Score=108.49 Aligned_cols=182 Identities=17% Similarity=0.151 Sum_probs=110.4
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCc-ceEEEEEeCCccCHHHHHHHHHHHh
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINF-DCVIWVVVSKDLRLEKIQEDIGKKI 168 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l 168 (557)
..++|++..++.+..++. .+....+.|+|++|+|||++|+.+++.... ..+ ...+.+..+.......+...+
T Consensus 25 ~~~~g~~~~~~~l~~~l~-~~~~~~~ll~G~~G~GKT~la~~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~---- 97 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVK-TGSMPHLLFAGPPGVGKTTAALALARELFG--ENWRHNFLELNASDERGINVIREKV---- 97 (327)
T ss_dssp TTCCSCHHHHHHHHHHHH-HTCCCEEEEESCTTSSHHHHHHHHHHHHHG--GGHHHHEEEEETTCHHHHHTTHHHH----
T ss_pred HHhhCCHHHHHHHHHHHH-cCCCCeEEEECcCCCCHHHHHHHHHHHhcC--CcccCceEEeeccccCchHHHHHHH----
Confidence 468999999999999988 444445999999999999999999988521 111 123333332211111111111
Q ss_pred CCCCCCCCCCCHHHHHHHHHHH--h-cCCcEEEEEccCCCc--cccccccccCCCCCCCCcEEEEeeCChHHH--hcccC
Q 036236 169 GLFDDSWKSKSVEEKAVDIFRS--L-REKRFVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTRSIDVC--GSMES 241 (557)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~l~~~--l-~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~iliTtR~~~v~--~~~~~ 241 (557)
...... + .+++.++|+||++.. .....+...+.....+ +++|+||...... .....
T Consensus 98 ----------------~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~-~~~i~~~~~~~~l~~~l~sr 160 (327)
T 1iqp_A 98 ----------------KEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSN-VRFILSCNYSSKIIEPIQSR 160 (327)
T ss_dssp ----------------HHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTT-EEEEEEESCGGGSCHHHHHT
T ss_pred ----------------HHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCC-CeEEEEeCCccccCHHHHhh
Confidence 111100 1 256789999999653 2233333333322233 7888888764321 11112
Q ss_pred CCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHHHHH
Q 036236 242 HRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTIGRA 298 (557)
Q Consensus 242 ~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~ 298 (557)
...+.+.+++.++..+++...+.......+ .+....|++.++|.|..+..+...
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~~~~~l~~ 214 (327)
T 1iqp_A 161 CAIFRFRPLRDEDIAKRLRYIAENEGLELT---EEGLQAILYIAEGDMRRAINILQA 214 (327)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHTTTCEEC---HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CcEEEecCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHCCCCHHHHHHHHHH
Confidence 347899999999999999887654332222 356788999999999866554433
No 93
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.98 E-value=5.7e-10 Score=115.50 Aligned_cols=108 Identities=22% Similarity=0.272 Sum_probs=96.4
Q ss_pred ccccccceEEEccccccccccCCCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccC-CccccCCCCCC
Q 036236 447 VKGWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQL-PVGMSKLGSLE 525 (557)
Q Consensus 447 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~l-P~~i~~L~~L~ 525 (557)
+..+++++.|++++|.+..+|....+++|+.|++++|. +..+++..|.++++|++|+|++| .+..+ |..+..+++|+
T Consensus 192 ~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 269 (452)
T 3zyi_A 192 FEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNH-FPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNAFDGLASLV 269 (452)
T ss_dssp TTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSC-CSEECGGGGTTCTTCCEEECTTS-CCCEECTTTTTTCTTCC
T ss_pred ccCCCCCCEEECCCCcccccccccccccccEEECcCCc-CcccCcccccCccCCCEEEeCCC-cCceECHHHhcCCCCCC
Confidence 56778999999999999999988999999999999998 77776666999999999999999 78766 67899999999
Q ss_pred eeeccCCCCcccChH-HHhHhhhhhcCCCCCC
Q 036236 526 LLDISHTFIKELPEE-LKKLLEAIQRAPRPDR 556 (557)
Q Consensus 526 ~L~l~~n~l~~lP~~-i~~L~~L~~L~~~~~~ 556 (557)
+|+|++|+|+.+|.. +..+++|+.|+++++.
T Consensus 270 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 270 ELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp EEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 999999999999876 6789999999988774
No 94
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.98 E-value=6.4e-10 Score=118.73 Aligned_cols=120 Identities=21% Similarity=0.190 Sum_probs=101.7
Q ss_pred EEEcCCCcccCCcccccccceEEEccccccccccC--CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCC
Q 036236 434 LVRAGAGLKEAPAVKGWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNI 511 (557)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~ 511 (557)
+...+.++..+|. .-.+++++|++++|.+..++. +..+++|++|++++|. +..+++..|.++++|++|+|++| .+
T Consensus 12 ~~c~~~~l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n-~l 88 (570)
T 2z63_A 12 YQCMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGN-PI 88 (570)
T ss_dssp EECCSSCCSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTC-CC
T ss_pred EEeCCCCccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECCCCc-CCccCcccccCchhCCEEeCcCC-cC
Confidence 3334556666665 234679999999999988764 4889999999999998 88888777999999999999999 88
Q ss_pred ccCC-ccccCCCCCCeeeccCCCCcccCh-HHHhHhhhhhcCCCCCC
Q 036236 512 FQLP-VGMSKLGSLELLDISHTFIKELPE-ELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 512 ~~lP-~~i~~L~~L~~L~l~~n~l~~lP~-~i~~L~~L~~L~~~~~~ 556 (557)
+.+| ..|+++++|++|++++|+++.+|. .++++++|++|+++++.
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~ 135 (570)
T 2z63_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135 (570)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSC
T ss_pred CccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCc
Confidence 8775 689999999999999999999987 69999999999998764
No 95
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.98 E-value=6.3e-10 Score=115.25 Aligned_cols=108 Identities=24% Similarity=0.330 Sum_probs=94.3
Q ss_pred ccccccceEEEccccccccccC--CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccC-CccccCCCC
Q 036236 447 VKGWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQL-PVGMSKLGS 523 (557)
Q Consensus 447 ~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~l-P~~i~~L~~ 523 (557)
+..+++++.|++++|.+..++. ...+++|+.|++++|. +..++...+..+++|++|+|++| .++.+ |..++.+++
T Consensus 295 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~ 372 (455)
T 3v47_A 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF-LGSIDSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPN 372 (455)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGGTTCTTCCEEECCSS-CCCEECTTTTTTCTT
T ss_pred cccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc-cCCcChhHhcCcccCCEEECCCC-cccccChhhcccccc
Confidence 5677899999999999987643 4789999999999998 77776666899999999999999 78876 779999999
Q ss_pred CCeeeccCCCCcccChH-HHhHhhhhhcCCCCCC
Q 036236 524 LELLDISHTFIKELPEE-LKKLLEAIQRAPRPDR 556 (557)
Q Consensus 524 L~~L~l~~n~l~~lP~~-i~~L~~L~~L~~~~~~ 556 (557)
|++|+|++|+++.+|.. +..+++|++|++++++
T Consensus 373 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 373 LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccEEECCCCccccCCHhHhccCCcccEEEccCCC
Confidence 99999999999999876 5899999999988775
No 96
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.98 E-value=4.6e-10 Score=125.49 Aligned_cols=118 Identities=20% Similarity=0.232 Sum_probs=62.9
Q ss_pred EEEcCCCcccCCcccccccceEEEcccccccccc--CCCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCC
Q 036236 434 LVRAGAGLKEAPAVKGWENVRRLSLMQNQIETLS--EVPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNI 511 (557)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~ 511 (557)
+...+.++..+|. ..+++++|++++|.+..++ ...++++|++|+|++|.....+++..|+++++|++|+|++| .+
T Consensus 9 ~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N-~l 85 (844)
T 3j0a_A 9 AFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-KI 85 (844)
T ss_dssp EEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-CC
T ss_pred EEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-cC
Confidence 3344555556665 4456667777766665542 22556666666666654344553333555566666666555 44
Q ss_pred ccC-CccccCCCCCCeeeccCCCCcc-cChH--HHhHhhhhhcCCCC
Q 036236 512 FQL-PVGMSKLGSLELLDISHTFIKE-LPEE--LKKLLEAIQRAPRP 554 (557)
Q Consensus 512 ~~l-P~~i~~L~~L~~L~l~~n~l~~-lP~~--i~~L~~L~~L~~~~ 554 (557)
..+ |..+++|++|++|+|++|.++. +|.. +++|++|++|+++.
T Consensus 86 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~ 132 (844)
T 3j0a_A 86 YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSK 132 (844)
T ss_dssp CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEES
T ss_pred cccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCC
Confidence 433 4555555555555555555543 3333 44555555554443
No 97
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.98 E-value=5.6e-10 Score=119.81 Aligned_cols=104 Identities=22% Similarity=0.245 Sum_probs=80.8
Q ss_pred ccceEEEccccccccccCCCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCccccCCCCCCeeecc
Q 036236 451 ENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVGMSKLGSLELLDIS 530 (557)
Q Consensus 451 ~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~i~~L~~L~~L~l~ 530 (557)
.+++.|++++|.+..++....+++|+.|++++|. +..+++..|+.+++|++|+|++| .++.+|..++.+++|++|+|+
T Consensus 232 ~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls 309 (597)
T 3oja_B 232 VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLS 309 (597)
T ss_dssp SCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECC
T ss_pred CCCCEEECCCCCCCCChhhccCCCCCEEECCCCc-cCCCCHHHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECC
Confidence 4677888888887777666778888888888887 55554444778888888888888 787788777788888888888
Q ss_pred CCCCcccChHHHhHhhhhhcCCCCCC
Q 036236 531 HTFIKELPEELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 531 ~n~l~~lP~~i~~L~~L~~L~~~~~~ 556 (557)
+|.++.+|..++.+++|++|++++++
T Consensus 310 ~N~l~~i~~~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 310 HNHLLHVERNQPQFDRLENLYLDHNS 335 (597)
T ss_dssp SSCCCCCGGGHHHHTTCSEEECCSSC
T ss_pred CCCCCccCcccccCCCCCEEECCCCC
Confidence 88888888888888888888777654
No 98
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.97 E-value=6.3e-10 Score=115.25 Aligned_cols=84 Identities=24% Similarity=0.307 Sum_probs=38.7
Q ss_pred ccceEEEccccccccccC--CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccC-CccccCCCCCCee
Q 036236 451 ENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQL-PVGMSKLGSLELL 527 (557)
Q Consensus 451 ~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~l-P~~i~~L~~L~~L 527 (557)
+++++|++++|.+..++. ...+++|++|++++|.....++...|.++++|++|+|++| .+..+ |..++++++|++|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-TTCEECTTTTTTCTTCCEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC-ccCccChhhccCcccCCEE
Confidence 455555555555544321 2445555555555554222343333444555555555554 33333 4444444444444
Q ss_pred eccCCCCc
Q 036236 528 DISHTFIK 535 (557)
Q Consensus 528 ~l~~n~l~ 535 (557)
+|++|.++
T Consensus 109 ~L~~n~l~ 116 (455)
T 3v47_A 109 TLTQCNLD 116 (455)
T ss_dssp ECTTSCCB
T ss_pred eCCCCCCC
Confidence 44444444
No 99
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.97 E-value=4.7e-10 Score=111.80 Aligned_cols=97 Identities=22% Similarity=0.189 Sum_probs=76.7
Q ss_pred CcccCCcccccccceEEEccc-cccccccC--CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCc
Q 036236 440 GLKEAPAVKGWENVRRLSLMQ-NQIETLSE--VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPV 516 (557)
Q Consensus 440 ~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~ 516 (557)
++..+|.+..+++|+.|+|++ |.+..++. +..+++|+.|+|++|. +..+++..|.++++|++|+|++| .++.+|.
T Consensus 20 ~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~ 97 (347)
T 2ifg_A 20 ALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFN-ALESLSW 97 (347)
T ss_dssp CCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSS-CCSCCCS
T ss_pred CCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCC-ccceeCH
Confidence 566777777778888899985 88887764 4788889999999887 77777766888888999999888 8888887
Q ss_pred cccCCCCCCeeeccCCCCcccC
Q 036236 517 GMSKLGSLELLDISHTFIKELP 538 (557)
Q Consensus 517 ~i~~L~~L~~L~l~~n~l~~lP 538 (557)
.+.....|++|+|++|.+....
T Consensus 98 ~~~~~~~L~~l~l~~N~~~c~c 119 (347)
T 2ifg_A 98 KTVQGLSLQELVLSGNPLHCSC 119 (347)
T ss_dssp TTTCSCCCCEEECCSSCCCCCG
T ss_pred HHcccCCceEEEeeCCCccCCC
Confidence 6555445889999888887543
No 100
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.97 E-value=8.7e-10 Score=120.39 Aligned_cols=116 Identities=22% Similarity=0.258 Sum_probs=67.2
Q ss_pred cCCCcccCCcccccccceEEEccccccccccC--CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccC
Q 036236 437 AGAGLKEAPAVKGWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQL 514 (557)
Q Consensus 437 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~l 514 (557)
.+.++..+|.. -.+++++|++++|.+..++. ...+++|++|++++|. +..+++..|+++++|++|+|++| .++.+
T Consensus 12 s~~~L~~ip~~-~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l 88 (680)
T 1ziw_A 12 SHLKLTQVPDD-LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT-ISKLEPELCQKLPMLKVLNLQHN-ELSQL 88 (680)
T ss_dssp CSSCCSSCCSC-SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSC-CCCCCTTHHHHCTTCCEEECCSS-CCCCC
T ss_pred CCCCccccccc-cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCc-cCccCHHHHhcccCcCEEECCCC-ccCcc
Confidence 33444444431 12466666666666665543 3556666666666665 44554444666666666666666 56666
Q ss_pred Cc-cccCCCCCCeeeccCCCCcccC-hHHHhHhhhhhcCCCCC
Q 036236 515 PV-GMSKLGSLELLDISHTFIKELP-EELKKLLEAIQRAPRPD 555 (557)
Q Consensus 515 P~-~i~~L~~L~~L~l~~n~l~~lP-~~i~~L~~L~~L~~~~~ 555 (557)
|. .|+++++|++|+|++|+++.+| ..++++++|++|+++++
T Consensus 89 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 131 (680)
T 1ziw_A 89 SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 131 (680)
T ss_dssp CTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSS
T ss_pred ChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCC
Confidence 55 4666666666666666666554 34666666666665544
No 101
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.96 E-value=3.2e-10 Score=124.04 Aligned_cols=96 Identities=20% Similarity=0.162 Sum_probs=78.3
Q ss_pred ccccccccccC-CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCccccCCCCCCeeeccCCCCcc
Q 036236 458 LMQNQIETLSE-VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVGMSKLGSLELLDISHTFIKE 536 (557)
Q Consensus 458 l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~i~~L~~L~~L~l~~n~l~~ 536 (557)
+..|.+..++. ...+++|+.|+|++|. +..+|.. +.++++|++|+|++| .++.+|.+|++|++|++|+|++|.|+.
T Consensus 208 ~~~n~~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~ 284 (727)
T 4b8c_D 208 DIENRMVMPKDSKYDDQLWHALDLSNLQ-IFNISAN-IFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTS 284 (727)
T ss_dssp --------------CCCCCCEEECTTSC-CSCCCGG-GGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSS
T ss_pred ccccceecChhhhccCCCCcEEECCCCC-CCCCChh-hcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCc
Confidence 33344443333 3778999999999998 7899988 558999999999999 899999999999999999999999999
Q ss_pred cChHHHhHhhhhhcCCCCCC
Q 036236 537 LPEELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 537 lP~~i~~L~~L~~L~~~~~~ 556 (557)
||.+|++|++|++|+++++.
T Consensus 285 lp~~~~~l~~L~~L~L~~N~ 304 (727)
T 4b8c_D 285 LPAELGSCFQLKYFYFFDNM 304 (727)
T ss_dssp CCSSGGGGTTCSEEECCSSC
T ss_pred cChhhcCCCCCCEEECCCCC
Confidence 99999999999999998874
No 102
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.96 E-value=1.6e-09 Score=107.95 Aligned_cols=104 Identities=15% Similarity=0.276 Sum_probs=50.2
Q ss_pred ccccccceEEEccccccccccCCCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCccccCCCCCCe
Q 036236 447 VKGWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVGMSKLGSLEL 526 (557)
Q Consensus 447 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~i~~L~~L~~ 526 (557)
+..++++++|++++|.+..++....+++|++|++++|. +..++. +..+++|++|++++|..+..+ ..++.+++|++
T Consensus 84 ~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~-i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~ 159 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDN-ISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNY 159 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSC-CCCCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCE
T ss_pred hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCc-ccCchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcE
Confidence 44444444444444444444444444444444444444 333333 444445555555544222222 23555555555
Q ss_pred eeccCCCCcccChHHHhHhhhhhcCCCCC
Q 036236 527 LDISHTFIKELPEELKKLLEAIQRAPRPD 555 (557)
Q Consensus 527 L~l~~n~l~~lP~~i~~L~~L~~L~~~~~ 555 (557)
|++++|.+..+|. +..+++|+.|+++++
T Consensus 160 L~l~~~~~~~~~~-~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 160 LTVTESKVKDVTP-IANLTDLYSLSLNYN 187 (347)
T ss_dssp EECCSSCCCCCGG-GGGCTTCSEEECTTS
T ss_pred EEecCCCcCCchh-hccCCCCCEEEccCC
Confidence 5555555555544 555666666555544
No 103
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.96 E-value=1.3e-09 Score=108.67 Aligned_cols=115 Identities=17% Similarity=0.164 Sum_probs=93.7
Q ss_pred cCCCcccCCcccccccceEEEccccccccccCCCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccC-C
Q 036236 437 AGAGLKEAPAVKGWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQL-P 515 (557)
Q Consensus 437 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~l-P 515 (557)
.+..+...+.+..+++++.|++++|.+..++....+++|+.|++++|. +..++. +..+++|++|++++| .+... |
T Consensus 229 ~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~L~~n-~l~~~~~ 304 (347)
T 4fmz_A 229 GNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQ-ISDISV--LNNLSQLNSLFLNNN-QLGNEDM 304 (347)
T ss_dssp CSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECCSS-CCCGGGH
T ss_pred cCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCc-cCCChh--hcCCCCCCEEECcCC-cCCCcCh
Confidence 444555555577788899999999988888777888999999999987 777753 788899999999999 67644 6
Q ss_pred ccccCCCCCCeeeccCCCCcccChHHHhHhhhhhcCCCCCC
Q 036236 516 VGMSKLGSLELLDISHTFIKELPEELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 516 ~~i~~L~~L~~L~l~~n~l~~lP~~i~~L~~L~~L~~~~~~ 556 (557)
..++.+++|++|+|++|.++.+|+ +..+++|++|+++++.
T Consensus 305 ~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 305 EVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp HHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC-
T ss_pred hHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhc
Confidence 678899999999999999998877 8889999999888764
No 104
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.96 E-value=5e-10 Score=119.01 Aligned_cols=101 Identities=20% Similarity=0.288 Sum_probs=47.1
Q ss_pred ccceEEEccccccccccC--CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCcc-ccCCCCCCee
Q 036236 451 ENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVG-MSKLGSLELL 527 (557)
Q Consensus 451 ~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~-i~~L~~L~~L 527 (557)
+++++|++++|.+..++. ...+++|++|++++|. +..+++..|.++++|++|+|++| .++.+|.. ++++++|++|
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L 103 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR-INTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYL 103 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCC-cCccChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcEE
Confidence 345555555555544321 2444555555555554 33444333444555555555555 44444332 4555555555
Q ss_pred eccCCCCcc--cChHHHhHhhhhhcCCC
Q 036236 528 DISHTFIKE--LPEELKKLLEAIQRAPR 553 (557)
Q Consensus 528 ~l~~n~l~~--lP~~i~~L~~L~~L~~~ 553 (557)
+|++|.++. +|..++++++|++|+++
T Consensus 104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~ 131 (549)
T 2z81_A 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIG 131 (549)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEE
T ss_pred ECCCCcccccchhhhhhccCCccEEECC
Confidence 555554442 23444444444444443
No 105
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.95 E-value=9.8e-09 Score=99.32 Aligned_cols=171 Identities=5% Similarity=0.026 Sum_probs=106.3
Q ss_pred cccchhHHHHHHHHHHhc---cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCC--Cc-c-eEEEEEeCCccCHHHHHHH
Q 036236 91 TIVGLQSQLEQVWRCLVV---EESVGIIGLYGMGGVGKTTLLTHINNKFLENPI--NF-D-CVIWVVVSKDLRLEKIQED 163 (557)
Q Consensus 91 ~~vGr~~~~~~l~~~L~~---~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~--~f-~-~~~wv~~~~~~~~~~~~~~ 163 (557)
.+.||++++++|...|.. .+....+.|+|++|+|||++++.+++....... .. . ..+.+.+....+...++..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 478999999999988874 467789999999999999999999998732111 11 1 3566676677788899999
Q ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHHh---cCCcEEEEEccCCCccccccccccC--CCCCCCCcEEEEeeCChH----
Q 036236 164 IGKKIGLFDDSWKSKSVEEKAVDIFRSL---REKRFVLLLDDIWERVDLTKVGVPL--PGPQNTTSKVVFTTRSID---- 234 (557)
Q Consensus 164 i~~~l~~~~~~~~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~~~l~~~l--~~~~~~~s~iliTtR~~~---- 234 (557)
|.+++..... ......+....+...+ .+++++++||+++...+-+.+...+ +....+...||.++...+
T Consensus 101 I~~~L~g~~~--~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~ 178 (318)
T 3te6_A 101 IWFAISKENL--CGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIRE 178 (318)
T ss_dssp HHHHHSCCC----CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHH
T ss_pred HHHHhcCCCC--CchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchh
Confidence 9999954321 1122233334444443 4578999999997543222121111 111111133343443321
Q ss_pred -H----HhcccCCCceecCCCCHHHHHHHHHHHhC
Q 036236 235 -V----CGSMESHRKFPVACLSEEDAWELFREKVG 264 (557)
Q Consensus 235 -v----~~~~~~~~~~~l~~L~~~ea~~L~~~~~~ 264 (557)
+ .+.+ ....+.+.|++.+|-.+++.+++.
T Consensus 179 ~L~~~v~SR~-~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 179 QINIMPSLKA-HFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHHTCHHHHT-TEEEEECCCCCHHHHHHHHHHHHH
T ss_pred hcchhhhccC-CceEEEeCCCCHHHHHHHHHHHHH
Confidence 1 1122 124689999999999999988763
No 106
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.95 E-value=4e-10 Score=117.65 Aligned_cols=104 Identities=15% Similarity=0.165 Sum_probs=53.5
Q ss_pred cccccceEEEccccccccccC--C-CCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCccccCCCCC
Q 036236 448 KGWENVRRLSLMQNQIETLSE--V-PTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVGMSKLGSL 524 (557)
Q Consensus 448 ~~~~~l~~l~l~~~~~~~~~~--~-~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~i~~L~~L 524 (557)
..+++++.|++++|.+...+. . ..+++|+.|+|++|. +..+|. ...+++|++|+|++| .++.+|+.++.+++|
T Consensus 141 ~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~--~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L 216 (487)
T 3oja_A 141 GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG--QVVFAKLKTLDLSSN-KLAFMGPEFQSAAGV 216 (487)
T ss_dssp GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC--CCCCTTCCEEECCSS-CCCEECGGGGGGTTC
T ss_pred cCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-cccccc--cccCCCCCEEECCCC-CCCCCCHhHcCCCCc
Confidence 344555555555555544211 1 144555555555555 444433 223555555555555 555555555555555
Q ss_pred CeeeccCCCCcccChHHHhHhhhhhcCCCCC
Q 036236 525 ELLDISHTFIKELPEELKKLLEAIQRAPRPD 555 (557)
Q Consensus 525 ~~L~l~~n~l~~lP~~i~~L~~L~~L~~~~~ 555 (557)
++|+|++|.|+.+|..++.+++|+.|+++++
T Consensus 217 ~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N 247 (487)
T 3oja_A 217 TWISLRNNKLVLIEKALRFSQNLEHFDLRGN 247 (487)
T ss_dssp SEEECTTSCCCEECTTCCCCTTCCEEECTTC
T ss_pred cEEEecCCcCcccchhhccCCCCCEEEcCCC
Confidence 5555555555555555555555555555444
No 107
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.95 E-value=7.2e-10 Score=108.38 Aligned_cols=114 Identities=25% Similarity=0.264 Sum_probs=65.6
Q ss_pred CCCcccCCcccccccceEEEccccccccccC--CCCCCCccEEEcccccccccc---cchHhhcCCCCcEEEeecCCCCc
Q 036236 438 GAGLKEAPAVKGWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNQELEMI---ADGFFQFMPSLKVLKISNCGNIF 512 (557)
Q Consensus 438 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~---p~~~~~~l~~L~~L~Ls~~~~~~ 512 (557)
+.+++.+|. ...+++++|++++|.+..+|. ...+++|+.|++++|. +..+ |.. +..+++|++|+|++| .+.
T Consensus 16 ~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~-~~~~~~L~~L~Ls~n-~i~ 91 (306)
T 2z66_A 16 SKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQS-DFGTTSLKYLDLSFN-GVI 91 (306)
T ss_dssp SSCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHH-HHSCSCCCEEECCSC-SEE
T ss_pred CCCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCc-cCcccCcccc-cccccccCEEECCCC-ccc
Confidence 334444443 223466777777776666654 2566667777776665 4333 333 445666666666666 566
Q ss_pred cCCccccCCCCCCeeeccCCCCcccCh--HHHhHhhhhhcCCCCC
Q 036236 513 QLPVGMSKLGSLELLDISHTFIKELPE--ELKKLLEAIQRAPRPD 555 (557)
Q Consensus 513 ~lP~~i~~L~~L~~L~l~~n~l~~lP~--~i~~L~~L~~L~~~~~ 555 (557)
.+|..+..+++|++|++++|.++.+|. .+.++++|++|+++++
T Consensus 92 ~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 136 (306)
T 2z66_A 92 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 136 (306)
T ss_dssp EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTS
T ss_pred cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCC
Confidence 666666666666666666666665543 4555566665555543
No 108
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.95 E-value=3.4e-10 Score=122.38 Aligned_cols=108 Identities=14% Similarity=0.150 Sum_probs=65.0
Q ss_pred ccccccceEEEcccccccc------------------ccCC-C--CCCCccEEEcccccccccccchHhhcCCCCcEEEe
Q 036236 447 VKGWENVRRLSLMQNQIET------------------LSEV-P--TCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKI 505 (557)
Q Consensus 447 ~~~~~~l~~l~l~~~~~~~------------------~~~~-~--~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~L 505 (557)
+..+++++.|++++|.+.. +|.. . ++++|++|++++|...+.+|.. ++++++|++|+|
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L 280 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINV 280 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT-TTTCSSCCEEEC
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH-HhcCCCCCEEEC
Confidence 4455666666666666655 5544 3 5666666666666645555554 666666666666
Q ss_pred ecCCCCc--cCCccccCC------CCCCeeeccCCCCcccCh--HHHhHhhhhhcCCCCC
Q 036236 506 SNCGNIF--QLPVGMSKL------GSLELLDISHTFIKELPE--ELKKLLEAIQRAPRPD 555 (557)
Q Consensus 506 s~~~~~~--~lP~~i~~L------~~L~~L~l~~n~l~~lP~--~i~~L~~L~~L~~~~~ 555 (557)
++|..++ .+|..+++| ++|++|+|++|+++.+|. .++++++|++|+++++
T Consensus 281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N 340 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN 340 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSC
T ss_pred cCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCC
Confidence 6662144 366666555 666666666666666666 6666666666666554
No 109
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.94 E-value=1.6e-09 Score=107.20 Aligned_cols=114 Identities=25% Similarity=0.297 Sum_probs=84.5
Q ss_pred CCCcccCCcccccccceEEEccccccccccC--CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCC
Q 036236 438 GAGLKEAPAVKGWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLP 515 (557)
Q Consensus 438 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP 515 (557)
+.++..+|.. -.++++.|++++|.+..++. ...+++|++|++++|. +..+++..|+++++|++|+|++| .++.+|
T Consensus 42 ~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~ 118 (332)
T 2ft3_A 42 DLGLKAVPKE-ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYISKN-HLVEIP 118 (332)
T ss_dssp SSCCSSCCSC-CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCEEECCSS-CCCSCC
T ss_pred CCCccccCCC-CCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCEEECCCC-cCCccC
Confidence 3344444432 23578888888888877644 4788888888888887 66665445888888888888888 788888
Q ss_pred ccccCCCCCCeeeccCCCCcccChH-HHhHhhhhhcCCCCCC
Q 036236 516 VGMSKLGSLELLDISHTFIKELPEE-LKKLLEAIQRAPRPDR 556 (557)
Q Consensus 516 ~~i~~L~~L~~L~l~~n~l~~lP~~-i~~L~~L~~L~~~~~~ 556 (557)
..+. ++|++|++++|.++.+|.. +.++++|++|+++++.
T Consensus 119 ~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~ 158 (332)
T 2ft3_A 119 PNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP 158 (332)
T ss_dssp SSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC
T ss_pred cccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCc
Confidence 7776 7888888888888887764 7778888887777653
No 110
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.93 E-value=3.7e-10 Score=124.97 Aligned_cols=109 Identities=15% Similarity=0.202 Sum_probs=76.5
Q ss_pred ccccccceEEEcccccccc------------------ccCC-C--CCCCccEEEcccccccccccchHhhcCCCCcEEEe
Q 036236 447 VKGWENVRRLSLMQNQIET------------------LSEV-P--TCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKI 505 (557)
Q Consensus 447 ~~~~~~l~~l~l~~~~~~~------------------~~~~-~--~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~L 505 (557)
+..+++|+.|++++|.+.. +|.. . .+++|+.|+|++|...+.+|.. ++++++|++|+|
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~L 522 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNI 522 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEEC
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCCEEEC
Confidence 5666777888888877776 5554 3 6777888888777766667755 777777777777
Q ss_pred ecCCCCc--cCCccccCCC-------CCCeeeccCCCCcccCh--HHHhHhhhhhcCCCCCC
Q 036236 506 SNCGNIF--QLPVGMSKLG-------SLELLDISHTFIKELPE--ELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 506 s~~~~~~--~lP~~i~~L~-------~L~~L~l~~n~l~~lP~--~i~~L~~L~~L~~~~~~ 556 (557)
++|..++ .+|..+++|. +|++|+|++|+++.+|. .++++++|++|++++++
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~ 584 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK 584 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC
Confidence 7772155 3676666555 77777777777777777 67777777777776653
No 111
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.93 E-value=7.2e-09 Score=104.27 Aligned_cols=195 Identities=15% Similarity=0.145 Sum_probs=110.1
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhC
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIG 169 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 169 (557)
..++|++..++.+...+......+.+.|+|++|+||||+|+.+++... ....+. ...+........+.....
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~-~~~~~~-------~~~~~~~~~~~~~~~~~~ 87 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN-CETGIT-------ATPCGVCDNCREIEQGRF 87 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHS-CTTCSC-------SSCCSSSHHHHHHHTSCC
T ss_pred hhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhC-CCCCCC-------CCCCcccHHHHHHhccCC
Confidence 468999999999999998444456789999999999999999988762 111110 000000011111111000
Q ss_pred C-----CCC-CCCCCCHHHHHHHHHHH-hcCCcEEEEEccCCCc--cccccccccCCCCCCCCcEEEEeeCChHH--Hhc
Q 036236 170 L-----FDD-SWKSKSVEEKAVDIFRS-LREKRFVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTRSIDV--CGS 238 (557)
Q Consensus 170 ~-----~~~-~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~iliTtR~~~v--~~~ 238 (557)
. ... ........+....+... ..+++.++|+||++.. .....+...+...... ..+|++|....- ...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~-~~~Il~~~~~~~l~~~l 166 (373)
T 1jr3_A 88 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEH-VKFLLATTDPQKLPVTI 166 (373)
T ss_dssp SSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSS-EEEEEEESCGGGSCHHH
T ss_pred CceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCc-eEEEEEeCChHhCcHHH
Confidence 0 000 00111222222111110 1346789999999643 2233343333332233 677777764431 111
Q ss_pred ccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHHH
Q 036236 239 MESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTIG 296 (557)
Q Consensus 239 ~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~ 296 (557)
......+.+.+++.++..+++...+.......+ .+....|++.++|.|..+..+.
T Consensus 167 ~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~---~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 167 LSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE---PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHSSSCHHHHHHHH
T ss_pred HhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHCCCCHHHHHHHH
Confidence 123457899999999999999877643221111 2467789999999998876554
No 112
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.93 E-value=1.5e-09 Score=113.24 Aligned_cols=115 Identities=24% Similarity=0.284 Sum_probs=67.5
Q ss_pred CCCcccCCcccccccceEEEccccccccccC--CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCC
Q 036236 438 GAGLKEAPAVKGWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLP 515 (557)
Q Consensus 438 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP 515 (557)
+.++..+|. .-..+++.|++++|.+..++. +..+++|+.|+|++|. +..+++..|.++++|++|+|++| .++.+|
T Consensus 20 ~~~l~~ip~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~ 96 (477)
T 2id5_A 20 RKRFVAVPE-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSN-RLKLIP 96 (477)
T ss_dssp SCCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCCSCC
T ss_pred CCCcCcCCC-CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCc-cCEeChhhhhCCccCCEEECCCC-cCCccC
Confidence 334444443 123456667777766665532 3566666677766665 55554334666666666666666 666665
Q ss_pred c-cccCCCCCCeeeccCCCCccc-ChHHHhHhhhhhcCCCCC
Q 036236 516 V-GMSKLGSLELLDISHTFIKEL-PEELKKLLEAIQRAPRPD 555 (557)
Q Consensus 516 ~-~i~~L~~L~~L~l~~n~l~~l-P~~i~~L~~L~~L~~~~~ 555 (557)
. .++++++|++|+|++|.++.+ |..+.++++|++|+++++
T Consensus 97 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n 138 (477)
T 2id5_A 97 LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN 138 (477)
T ss_dssp TTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT
T ss_pred cccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCC
Confidence 4 356666666666666666654 344566666666655543
No 113
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.93 E-value=7e-10 Score=104.27 Aligned_cols=107 Identities=10% Similarity=0.039 Sum_probs=58.3
Q ss_pred cccccceEEEccccccccccCCCCCCCcc---EEEcccccccccccchHhhcCCCCc-EEEeecCCCCccCCccccCCCC
Q 036236 448 KGWENVRRLSLMQNQIETLSEVPTCPHLL---TLFLDFNQELEMIADGFFQFMPSLK-VLKISNCGNIFQLPVGMSKLGS 523 (557)
Q Consensus 448 ~~~~~l~~l~l~~~~~~~~~~~~~~~~L~---~L~l~~~~~~~~~p~~~~~~l~~L~-~L~Ls~~~~~~~lP~~i~~L~~ 523 (557)
..+++++.|++++|.+..+|....+++|+ .|++++|..+..+|...|..+++|+ +|++++| .++.+|.......+
T Consensus 102 ~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~ 180 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGYAFNGTK 180 (239)
T ss_dssp ECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTTTTTTCE
T ss_pred CCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHhhcCCCC
Confidence 34555666666666655555554555555 6666655225555554455566666 6666665 55555554444455
Q ss_pred CCeeeccCCC-CcccChH-HHhH-hhhhhcCCCCC
Q 036236 524 LELLDISHTF-IKELPEE-LKKL-LEAIQRAPRPD 555 (557)
Q Consensus 524 L~~L~l~~n~-l~~lP~~-i~~L-~~L~~L~~~~~ 555 (557)
|++|+|++|+ ++.+|.. +..+ ++|+.|+++++
T Consensus 181 L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N 215 (239)
T 2xwt_C 181 LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT 215 (239)
T ss_dssp EEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC
T ss_pred CCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC
Confidence 5666666553 5555432 4555 55555555543
No 114
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.93 E-value=1.7e-11 Score=111.90 Aligned_cols=106 Identities=25% Similarity=0.247 Sum_probs=95.8
Q ss_pred cccccccceEEEccccccccccCCCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCccccCCCCCC
Q 036236 446 AVKGWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVGMSKLGSLE 525 (557)
Q Consensus 446 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~i~~L~~L~ 525 (557)
.+..+++++.|++++|.+..+|....+++|+.|++++|. +..+|.. +..+++|++|+|++| .++.+| .++.+++|+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~-l~~l~~~-~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~L~ 118 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNL-IKKIENL-DAVADTLEELWISYN-QIASLS-GIEKLVNLR 118 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEE-ECSCSSH-HHHHHHCSEEEEEEE-ECCCHH-HHHHHHHSS
T ss_pred HHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCC-cccccch-hhcCCcCCEEECcCC-cCCcCC-ccccCCCCC
Confidence 456678999999999999999866889999999999998 8889875 778899999999999 899988 799999999
Q ss_pred eeeccCCCCcccCh--HHHhHhhhhhcCCCCC
Q 036236 526 LLDISHTFIKELPE--ELKKLLEAIQRAPRPD 555 (557)
Q Consensus 526 ~L~l~~n~l~~lP~--~i~~L~~L~~L~~~~~ 555 (557)
+|+|++|+++.+|. .+.++++|++|+++++
T Consensus 119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp EEEESEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred EEECCCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence 99999999999876 7899999999998876
No 115
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.92 E-value=7.8e-10 Score=108.72 Aligned_cols=102 Identities=19% Similarity=0.180 Sum_probs=93.8
Q ss_pred ccccceEEEccccccccccCCCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCccccCCCCCCeee
Q 036236 449 GWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVGMSKLGSLELLD 528 (557)
Q Consensus 449 ~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~i~~L~~L~~L~ 528 (557)
.+++++.|++++|.+..++....+++|+.|++++|. +..+|.. +..+++|++|+|++| .++.+|..++.+++|++|+
T Consensus 167 ~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~-~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~ 243 (317)
T 3o53_A 167 SSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNK-LAFMGPE-FQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFD 243 (317)
T ss_dssp GTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSC-CCEECGG-GGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEE
T ss_pred ccCcCCEEECCCCcCcccccccccccCCEEECCCCc-CCcchhh-hcccCcccEEECcCC-cccchhhHhhcCCCCCEEE
Confidence 567899999999999998887789999999999998 8889888 889999999999999 9999999999999999999
Q ss_pred ccCCCCc--ccChHHHhHhhhhhcCCC
Q 036236 529 ISHTFIK--ELPEELKKLLEAIQRAPR 553 (557)
Q Consensus 529 l~~n~l~--~lP~~i~~L~~L~~L~~~ 553 (557)
|++|.+. .+|..+..+++|+.|+++
T Consensus 244 l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 244 LRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp CTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred ccCCCccCcCHHHHHhccccceEEECC
Confidence 9999998 688889999999887654
No 116
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.92 E-value=2.4e-09 Score=110.70 Aligned_cols=109 Identities=16% Similarity=0.203 Sum_probs=76.3
Q ss_pred cCCCcccCCcccccccceEEEccccccccccCCCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCc
Q 036236 437 AGAGLKEAPAVKGWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPV 516 (557)
Q Consensus 437 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~ 516 (557)
.+..+..+|.+..++++++|++++|.+..++ ...+++|++|++++|. +..+| ++++++|++|++++| .++.+|
T Consensus 50 s~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~-l~~~~---~~~l~~L~~L~L~~N-~l~~l~- 122 (457)
T 3bz5_A 50 HNSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNK-LTNLD---VTPLTKLTYLNCDTN-KLTKLD- 122 (457)
T ss_dssp CSSCCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSC-CSCCC---CTTCTTCCEEECCSS-CCSCCC-
T ss_pred cCCCcccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCC-Cceee---cCCCCcCCEEECCCC-cCCeec-
Confidence 3344455566667777778888877777765 6677777777777776 65554 667777777777777 677775
Q ss_pred cccCCCCCCeeeccCCCCcccChHHHhHhhhhhcCCCCC
Q 036236 517 GMSKLGSLELLDISHTFIKELPEELKKLLEAIQRAPRPD 555 (557)
Q Consensus 517 ~i~~L~~L~~L~l~~n~l~~lP~~i~~L~~L~~L~~~~~ 555 (557)
++++++|++|++++|+++.+| ++++++|++|+++.+
T Consensus 123 -~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n 158 (457)
T 3bz5_A 123 -VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLN 158 (457)
T ss_dssp -CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTC
T ss_pred -CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCC
Confidence 777777777777777777765 566666666666554
No 117
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.92 E-value=1.2e-09 Score=118.04 Aligned_cols=89 Identities=16% Similarity=0.273 Sum_probs=78.2
Q ss_pred ccC-CCCCCCccEEEccccccccc------------------ccchHhh--cCCCCcEEEeecCCCCccCCccccCCCCC
Q 036236 466 LSE-VPTCPHLLTLFLDFNQELEM------------------IADGFFQ--FMPSLKVLKISNCGNIFQLPVGMSKLGSL 524 (557)
Q Consensus 466 ~~~-~~~~~~L~~L~l~~~~~~~~------------------~p~~~~~--~l~~L~~L~Ls~~~~~~~lP~~i~~L~~L 524 (557)
+|. ..++++|++|+|++|. +.. +|.. ++ ++++|++|+|++|...+.+|..+++|++|
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 275 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEM 275 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSC
T ss_pred CCHHHhcccCCCEEECcCCc-cccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcCCccChHHHhcCCCC
Confidence 443 3678999999999998 665 8987 77 99999999999995567899999999999
Q ss_pred CeeeccCCC-Cc--ccChHHHhH------hhhhhcCCCCCC
Q 036236 525 ELLDISHTF-IK--ELPEELKKL------LEAIQRAPRPDR 556 (557)
Q Consensus 525 ~~L~l~~n~-l~--~lP~~i~~L------~~L~~L~~~~~~ 556 (557)
++|+|++|+ ++ .+|.++++| ++|++|++++++
T Consensus 276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~ 316 (636)
T 4eco_A 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316 (636)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc
Confidence 999999998 88 499999998 999999998764
No 118
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.91 E-value=4.6e-10 Score=110.10 Aligned_cols=104 Identities=23% Similarity=0.255 Sum_probs=68.6
Q ss_pred cccccceEEEccccccccccCC-----CCCCCccEEEccccccccccc-chHhhcCCCCcEEEeecCCCCccCCccccCC
Q 036236 448 KGWENVRRLSLMQNQIETLSEV-----PTCPHLLTLFLDFNQELEMIA-DGFFQFMPSLKVLKISNCGNIFQLPVGMSKL 521 (557)
Q Consensus 448 ~~~~~l~~l~l~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~p-~~~~~~l~~L~~L~Ls~~~~~~~lP~~i~~L 521 (557)
..+++++.|++++|.+..++.. ..+++|+.|++++|. +...+ ...+..+++|++|+|++| .++.+|..+.
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~-- 273 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS-LRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPKGLP-- 273 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCCSCCCCCTTCCEEECTTS-CCSSCCSSCC--
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc-CCcccchhhhhhcCCCCEEECCCC-ccChhhhhcc--
Confidence 4456667777777766643221 355677777777776 44332 233555677777777777 6777777666
Q ss_pred CCCCeeeccCCCCcccChHHHhHhhhhhcCCCCCC
Q 036236 522 GSLELLDISHTFIKELPEELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 522 ~~L~~L~l~~n~l~~lP~~i~~L~~L~~L~~~~~~ 556 (557)
++|++|+|++|+|+.+|. +..+++|++|++++++
T Consensus 274 ~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 274 AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCT
T ss_pred CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCC
Confidence 677777777777777766 7777777777776654
No 119
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.91 E-value=1e-09 Score=113.49 Aligned_cols=102 Identities=12% Similarity=0.129 Sum_probs=92.9
Q ss_pred cccccccceEEEccccccccccCCCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCccccCCCCCC
Q 036236 446 AVKGWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVGMSKLGSLE 525 (557)
Q Consensus 446 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~i~~L~~L~ 525 (557)
.+..++++++|++++|.+..+|....+++|++|++++|. +..+| ++.+++|++|+|++| .++.+| ++++++|+
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~-l~~~~---~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~ 109 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNN-ITTLD---LSQNTNLTYLACDSN-KLTNLD--VTPLTKLT 109 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSC-CSCCC---CTTCTTCSEEECCSS-CCSCCC--CTTCTTCC
T ss_pred ChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCc-CCeEc---cccCCCCCEEECcCC-CCceee--cCCCCcCC
Confidence 456678999999999999998888899999999999998 77775 788999999999999 899886 99999999
Q ss_pred eeeccCCCCcccChHHHhHhhhhhcCCCCCC
Q 036236 526 LLDISHTFIKELPEELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 526 ~L~l~~n~l~~lP~~i~~L~~L~~L~~~~~~ 556 (557)
+|++++|+++.+| ++++++|++|+++.++
T Consensus 110 ~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~ 138 (457)
T 3bz5_A 110 YLNCDTNKLTKLD--VSQNPLLTYLNCARNT 138 (457)
T ss_dssp EEECCSSCCSCCC--CTTCTTCCEEECTTSC
T ss_pred EEECCCCcCCeec--CCCCCcCCEEECCCCc
Confidence 9999999999997 8999999999988764
No 120
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.89 E-value=2e-09 Score=105.57 Aligned_cols=119 Identities=20% Similarity=0.160 Sum_probs=94.4
Q ss_pred EEEcCCCcccCC--cccccccceEEEcccccccc----ccCC--CCCCCccEEEcccccccc---cccchHhhcCCCCcE
Q 036236 434 LVRAGAGLKEAP--AVKGWENVRRLSLMQNQIET----LSEV--PTCPHLLTLFLDFNQELE---MIADGFFQFMPSLKV 502 (557)
Q Consensus 434 ~~~~~~~~~~~~--~~~~~~~l~~l~l~~~~~~~----~~~~--~~~~~L~~L~l~~~~~~~---~~p~~~~~~l~~L~~ 502 (557)
+...+..+..++ .+..+++++.|++++|.+.. ++.. ..+++|+.|++++|. +. .++..++..+++|++
T Consensus 154 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~ 232 (312)
T 1wwl_A 154 LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQG 232 (312)
T ss_dssp EEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSE
T ss_pred EEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCE
Confidence 333444444443 46788899999999998643 2233 788999999999998 66 445565778999999
Q ss_pred EEeecCCCCccCC--ccccCCCCCCeeeccCCCCcccChHHHhHhhhhhcCCCCCC
Q 036236 503 LKISNCGNIFQLP--VGMSKLGSLELLDISHTFIKELPEELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 503 L~Ls~~~~~~~lP--~~i~~L~~L~~L~l~~n~l~~lP~~i~~L~~L~~L~~~~~~ 556 (557)
|+|++| .++..+ ..+..+++|++|+|++|+|+.+|..+. ++|++|++++++
T Consensus 233 L~Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~ 285 (312)
T 1wwl_A 233 LDLSHN-SLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNR 285 (312)
T ss_dssp EECTTS-CCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSC
T ss_pred EECCCC-cCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCC
Confidence 999999 787754 467779999999999999999999887 899999998775
No 121
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.89 E-value=5.5e-09 Score=103.26 Aligned_cols=100 Identities=23% Similarity=0.292 Sum_probs=57.7
Q ss_pred ccceEEEccccccccccC--CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCccccCCCCCCeee
Q 036236 451 ENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVGMSKLGSLELLD 528 (557)
Q Consensus 451 ~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~i~~L~~L~~L~ 528 (557)
++++.|++++|.+..++. ...+++|++|++++|. +..+++..|..+++|++|+|++| .++.+|..+. ++|++|+
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~--~~L~~L~ 127 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPLVKLERLYLSKN-QLKELPEKMP--KTLQELR 127 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSCC--TTCCEEE
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCc-CCeeCHHHhcCCCCCCEEECCCC-cCCccChhhc--ccccEEE
Confidence 456666666666666543 3566666777776666 55553333666666666666666 5666665544 4555555
Q ss_pred ccCCCCcccChH-HHhHhhhhhcCCCC
Q 036236 529 ISHTFIKELPEE-LKKLLEAIQRAPRP 554 (557)
Q Consensus 529 l~~n~l~~lP~~-i~~L~~L~~L~~~~ 554 (557)
+++|.++.+|.. +.++++|++|+++.
T Consensus 128 l~~n~l~~~~~~~~~~l~~L~~L~l~~ 154 (330)
T 1xku_A 128 VHENEITKVRKSVFNGLNQMIVVELGT 154 (330)
T ss_dssp CCSSCCCBBCHHHHTTCTTCCEEECCS
T ss_pred CCCCcccccCHhHhcCCccccEEECCC
Confidence 555555554432 44455555544443
No 122
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.89 E-value=1.8e-09 Score=112.59 Aligned_cols=106 Identities=15% Similarity=0.124 Sum_probs=89.7
Q ss_pred ccccceEEEccccccccccC--CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCccccCCCCCCe
Q 036236 449 GWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVGMSKLGSLEL 526 (557)
Q Consensus 449 ~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~i~~L~~L~~ 526 (557)
.+++++.|++++|.+..++. ...+++|+.|++++|...+..|..+...+++|++|+|++| .++.+|. +..+++|++
T Consensus 118 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~ 195 (487)
T 3oja_A 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKG-QVVFAKLKT 195 (487)
T ss_dssp CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEEC-CCCCTTCCE
T ss_pred ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC-ccccccc-cccCCCCCE
Confidence 45789999999999987643 3678999999999998434455554458999999999999 8988864 446999999
Q ss_pred eeccCCCCcccChHHHhHhhhhhcCCCCCC
Q 036236 527 LDISHTFIKELPEELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 527 L~l~~n~l~~lP~~i~~L~~L~~L~~~~~~ 556 (557)
|+|++|.|+.+|++++.+++|+.|++++++
T Consensus 196 L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~ 225 (487)
T 3oja_A 196 LDLSSNKLAFMGPEFQSAAGVTWISLRNNK 225 (487)
T ss_dssp EECCSSCCCEECGGGGGGTTCSEEECTTSC
T ss_pred EECCCCCCCCCCHhHcCCCCccEEEecCCc
Confidence 999999999999999999999999998875
No 123
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.88 E-value=2.4e-09 Score=115.26 Aligned_cols=102 Identities=18% Similarity=0.087 Sum_probs=59.2
Q ss_pred cceEEEccccccccccC--CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccC-CccccCCCCCCeee
Q 036236 452 NVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQL-PVGMSKLGSLELLD 528 (557)
Q Consensus 452 ~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~l-P~~i~~L~~L~~L~ 528 (557)
.+++|++++|.+..++. ...+++|++|++++|. +..+++..|+++++|++|+|++| .+..+ |..++++++|++|+
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ-IYWIHEDTFQSQHRLDTLVLTAN-PLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTC-CCSEECTTTTSSCTTCCEEE
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCc-cceeChhhccCccccCeeeCCCC-cccccChhhhcccccccEee
Confidence 56666666666655532 2566666666666665 44443333666666666666666 45443 55666666666666
Q ss_pred ccCCCCccc-ChHHHhHhhhhhcCCCCC
Q 036236 529 ISHTFIKEL-PEELKKLLEAIQRAPRPD 555 (557)
Q Consensus 529 l~~n~l~~l-P~~i~~L~~L~~L~~~~~ 555 (557)
|++|.++.+ |..++++++|++|+++++
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n 139 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSN 139 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSS
T ss_pred ccccCcccCCcchhccCCcccEEECCCC
Confidence 666666655 344556666666655544
No 124
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.88 E-value=1.4e-09 Score=106.63 Aligned_cols=105 Identities=15% Similarity=0.135 Sum_probs=59.3
Q ss_pred ccccccceEEEcccccccc---ccC---CCCCCCccEEEcccccccccccch---HhhcCCCCcEEEeecCCCCccC-Cc
Q 036236 447 VKGWENVRRLSLMQNQIET---LSE---VPTCPHLLTLFLDFNQELEMIADG---FFQFMPSLKVLKISNCGNIFQL-PV 516 (557)
Q Consensus 447 ~~~~~~l~~l~l~~~~~~~---~~~---~~~~~~L~~L~l~~~~~~~~~p~~---~~~~l~~L~~L~Ls~~~~~~~l-P~ 516 (557)
+..++++++|++++|.+.. ++. ...+++|++|++++|. +..++.. +++.+++|++|+|++| .++.+ |.
T Consensus 165 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~p~ 242 (310)
T 4glp_A 165 VRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHN-SLRATVNP 242 (310)
T ss_dssp CCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTS-CCCCCCCS
T ss_pred hccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCC-CCCccchh
Confidence 4456667777777776532 211 1455666666666665 4433331 3455666666666666 55544 55
Q ss_pred cccCC---CCCCeeeccCCCCcccChHHHhHhhhhhcCCCCC
Q 036236 517 GMSKL---GSLELLDISHTFIKELPEELKKLLEAIQRAPRPD 555 (557)
Q Consensus 517 ~i~~L---~~L~~L~l~~n~l~~lP~~i~~L~~L~~L~~~~~ 555 (557)
.++.+ ++|++|+|++|+|+.+|..+. ++|++|+++.+
T Consensus 243 ~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N 282 (310)
T 4glp_A 243 SAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSN 282 (310)
T ss_dssp CCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSC
T ss_pred hHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCC
Confidence 55555 466666666666666665553 45555555544
No 125
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.87 E-value=1.1e-09 Score=108.49 Aligned_cols=103 Identities=22% Similarity=0.342 Sum_probs=75.4
Q ss_pred ccceEEEccccccccccC--CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCccccCCCCCCeee
Q 036236 451 ENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVGMSKLGSLELLD 528 (557)
Q Consensus 451 ~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~i~~L~~L~~L~ 528 (557)
++++.|++++|.+..++. ...+++|+.|++++|. +..++...+..+++|++|+|++| .++.+|..++.+++|++|+
T Consensus 193 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~ 270 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVY 270 (332)
T ss_dssp SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC-CCCCCTTGGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEE
T ss_pred CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CCcCChhHhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEE
Confidence 567778888887776542 3677888888888887 66666655778888888888888 7888888888888888888
Q ss_pred ccCCCCcccChH-HHh------HhhhhhcCCCCC
Q 036236 529 ISHTFIKELPEE-LKK------LLEAIQRAPRPD 555 (557)
Q Consensus 529 l~~n~l~~lP~~-i~~------L~~L~~L~~~~~ 555 (557)
+++|+|+.+|.. ++. ..+|+.|+++++
T Consensus 271 l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N 304 (332)
T 2ft3_A 271 LHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNN 304 (332)
T ss_dssp CCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSS
T ss_pred CCCCCCCccChhHccccccccccccccceEeecC
Confidence 888888877654 333 245666666554
No 126
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.87 E-value=1.7e-09 Score=113.99 Aligned_cols=98 Identities=15% Similarity=0.077 Sum_probs=88.5
Q ss_pred eEEEccccccccccCCCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccC-CccccCCCCCCeeeccCC
Q 036236 454 RRLSLMQNQIETLSEVPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQL-PVGMSKLGSLELLDISHT 532 (557)
Q Consensus 454 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~l-P~~i~~L~~L~~L~l~~n 532 (557)
+++++++|.+..+|.... ++|+.|++++|. +..+++..|.++++|++|+|++| .++.+ |..++++++|++|+|++|
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNY-ISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSC-CCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCc-ccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCC
Confidence 579999999999887543 899999999998 77888666999999999999999 88877 789999999999999999
Q ss_pred CCcccChHHHhHhhhhhcCCCCCC
Q 036236 533 FIKELPEELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 533 ~l~~lP~~i~~L~~L~~L~~~~~~ 556 (557)
+|+.+|.. .+++|++|++++++
T Consensus 80 ~l~~lp~~--~l~~L~~L~L~~N~ 101 (520)
T 2z7x_B 80 KLVKISCH--PTVNLKHLDLSFNA 101 (520)
T ss_dssp CCCEEECC--CCCCCSEEECCSSC
T ss_pred ceeecCcc--ccCCccEEeccCCc
Confidence 99999988 89999999998775
No 127
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.86 E-value=2.6e-09 Score=116.66 Aligned_cols=106 Identities=22% Similarity=0.234 Sum_probs=62.3
Q ss_pred cccccceEEEccccccccccC--CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccC-CccccCCCCC
Q 036236 448 KGWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQL-PVGMSKLGSL 524 (557)
Q Consensus 448 ~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~l-P~~i~~L~~L 524 (557)
..++++++|++++|.+..+|. ...+++|++|++++|. +..+|+..|+++++|++|+|++| .+..+ |..++++++|
T Consensus 70 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L 147 (680)
T 1ziw_A 70 QKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENL 147 (680)
T ss_dssp HHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSS-CCSCCCCCSSSCCTTC
T ss_pred hcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCC-cccccCchhhcccccC
Confidence 345566666666666655554 3556666666666665 55555444666666666666666 44433 4456666666
Q ss_pred CeeeccCCCCcccChH-HH--hHhhhhhcCCCCC
Q 036236 525 ELLDISHTFIKELPEE-LK--KLLEAIQRAPRPD 555 (557)
Q Consensus 525 ~~L~l~~n~l~~lP~~-i~--~L~~L~~L~~~~~ 555 (557)
++|++++|.++.+|.. +. .+++|++|+++++
T Consensus 148 ~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n 181 (680)
T 1ziw_A 148 QELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181 (680)
T ss_dssp CEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC
T ss_pred CEEEccCCcccccCHHHhhccccccccEEECCCC
Confidence 6666666666665543 22 3356666666554
No 128
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.85 E-value=1.2e-08 Score=100.22 Aligned_cols=180 Identities=11% Similarity=0.094 Sum_probs=109.6
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcc-eEEEEEeCCccCHHHHHHHHHHHh
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFD-CVIWVVVSKDLRLEKIQEDIGKKI 168 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l 168 (557)
..++|++..++.+.+++. .+....+.|+|++|+|||++|+.+++... ...+. ..+.+..+.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~-~~~~~~~ll~G~~G~GKt~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~----------- 82 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVE-RKNIPHLLFSGPPGTGKTATAIALARDLF--GENWRDNFIEMNASDERGI----------- 82 (319)
T ss_dssp GGSCSCHHHHHHHHTTTT-TTCCCCEEEESSSSSSHHHHHHHHHHHHH--TTCHHHHCEEEETTSTTCT-----------
T ss_pred HHHhCCHHHHHHHHHHHh-CCCCCeEEEECcCCcCHHHHHHHHHHHhc--CCcccCCeEEEeCccccCh-----------
Confidence 468999999999999887 44444489999999999999999998852 11111 1223333221110
Q ss_pred CCCCCCCCCCCHHHHHHHHHHH--h-cCCcEEEEEccCCCc--cccccccccCCCCCCCCcEEEEeeCChHH--HhcccC
Q 036236 169 GLFDDSWKSKSVEEKAVDIFRS--L-REKRFVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTRSIDV--CGSMES 241 (557)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~l~~~--l-~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~iliTtR~~~v--~~~~~~ 241 (557)
....+....+... + .+++.++|+|+++.. .....+...+...... .++|+||....- ......
T Consensus 83 ---------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~-~~~i~~~~~~~~l~~~l~sr 152 (319)
T 2chq_A 83 ---------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKS-CRFILSCNYVSRIIEPIQSR 152 (319)
T ss_dssp ---------TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSS-EEEEEEESCGGGSCHHHHTT
T ss_pred ---------HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCC-CeEEEEeCChhhcchHHHhh
Confidence 0111111111111 1 256789999999643 2234444444433334 778887765431 111122
Q ss_pred CCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHHH
Q 036236 242 HRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTIG 296 (557)
Q Consensus 242 ~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~ 296 (557)
...+.+.+++.++..+++...+.......+ .+....+++.++|.+..+....
T Consensus 153 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~---~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 153 CAVFRFKPVPKEAMKKRLLEICEKEGVKIT---EDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp CEEEECCCCCHHHHHHHHHHHHHTTCCCBC---HHHHHHHHHTTTTCHHHHHHHH
T ss_pred CeEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 347899999999999999887654332222 3567788899999997654443
No 129
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.85 E-value=6.7e-10 Score=108.83 Aligned_cols=103 Identities=20% Similarity=0.261 Sum_probs=88.1
Q ss_pred cccccceEEEccccccccccC-----CCCCCCccEEEcccccccccc-cchHhhcC---CCCcEEEeecCCCCccCCccc
Q 036236 448 KGWENVRRLSLMQNQIETLSE-----VPTCPHLLTLFLDFNQELEMI-ADGFFQFM---PSLKVLKISNCGNIFQLPVGM 518 (557)
Q Consensus 448 ~~~~~l~~l~l~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~-p~~~~~~l---~~L~~L~Ls~~~~~~~lP~~i 518 (557)
..++++++|++++|.++.++. ...+++|+.|++++|. +..+ |.. +..+ ++|++|+|++| .++.+|..+
T Consensus 194 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~-~~~~~~~~~L~~L~Ls~N-~l~~lp~~~ 270 (310)
T 4glp_A 194 HKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPS-APRCMWSSALNSLNLSFA-GLEQVPKGL 270 (310)
T ss_dssp TSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSC-CSSCCCCTTCCCEECCSS-CCCSCCSCC
T ss_pred hcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhh-HHhccCcCcCCEEECCCC-CCCchhhhh
Confidence 467789999999999987654 2577999999999999 6555 665 5555 69999999999 899999988
Q ss_pred cCCCCCCeeeccCCCCcccChHHHhHhhhhhcCCCCCC
Q 036236 519 SKLGSLELLDISHTFIKELPEELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 519 ~~L~~L~~L~l~~n~l~~lP~~i~~L~~L~~L~~~~~~ 556 (557)
. ++|++|+|++|+|+.+|. +..+++|+.|++++++
T Consensus 271 ~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 271 P--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp C--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTT
T ss_pred c--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCC
Confidence 6 799999999999999987 7889999999988875
No 130
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.84 E-value=6.9e-09 Score=107.78 Aligned_cols=111 Identities=23% Similarity=0.249 Sum_probs=74.4
Q ss_pred CcccCCcccccccceEEEccccccccccCCCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCcccc
Q 036236 440 GLKEAPAVKGWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVGMS 519 (557)
Q Consensus 440 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~i~ 519 (557)
.+...+.+..+++++.|++++|.+..++....+++|+.|++++|. +..++. +..+++|++|+|++| .+..++. ++
T Consensus 254 ~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~L~~n-~l~~~~~-~~ 328 (466)
T 1o6v_A 254 QISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ-LEDISP--ISNLKNLTYLTLYFN-NISDISP-VS 328 (466)
T ss_dssp CCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSC-CSCCGG--GGGCTTCSEEECCSS-CCSCCGG-GG
T ss_pred ccccchhhhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCc-ccCchh--hcCCCCCCEEECcCC-cCCCchh-hc
Confidence 333444455566677777777766666556667777777777776 555554 566777777777777 6666654 67
Q ss_pred CCCCCCeeeccCCCCcccChHHHhHhhhhhcCCCCCC
Q 036236 520 KLGSLELLDISHTFIKELPEELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 520 ~L~~L~~L~l~~n~l~~lP~~i~~L~~L~~L~~~~~~ 556 (557)
.+++|++|++++|.++.+| .+.++++|+.|++++++
T Consensus 329 ~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 329 SLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQ 364 (466)
T ss_dssp GCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSC
T ss_pred cCccCCEeECCCCccCCch-hhccCCCCCEEeCCCCc
Confidence 7777777777777777764 57777777777776654
No 131
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.84 E-value=1.8e-09 Score=114.68 Aligned_cols=108 Identities=19% Similarity=0.208 Sum_probs=84.5
Q ss_pred cccccccceEEEccccccccccC--CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCcc--CCccccCC
Q 036236 446 AVKGWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQ--LPVGMSKL 521 (557)
Q Consensus 446 ~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~--lP~~i~~L 521 (557)
.+..++++++|++++|.+..++. ...+++|++|++++|. +..+|+..|+++++|++|+|++| .++. +|..++++
T Consensus 45 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l 122 (549)
T 2z81_A 45 DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKYLNLMGN-PYQTLGVTSLFPNL 122 (549)
T ss_dssp TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHTTCTTCCEEECTTC-CCSSSCSSCSCTTC
T ss_pred hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc-cCccCHHHhccCCCCcEEECCCC-cccccchhhhhhcc
Confidence 45677888888888888877653 4778888888888887 77777766888888888888888 7774 46778888
Q ss_pred CCCCeeeccCCC-CcccC-hHHHhHhhhhhcCCCCC
Q 036236 522 GSLELLDISHTF-IKELP-EELKKLLEAIQRAPRPD 555 (557)
Q Consensus 522 ~~L~~L~l~~n~-l~~lP-~~i~~L~~L~~L~~~~~ 555 (557)
++|++|++++|. +..+| ..++++++|++|+++++
T Consensus 123 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n 158 (549)
T 2z81_A 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158 (549)
T ss_dssp TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred CCccEEECCCCccccccCHhhhhcccccCeeeccCC
Confidence 888888888887 67776 46788888887776654
No 132
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.84 E-value=6.2e-09 Score=110.91 Aligned_cols=105 Identities=19% Similarity=0.304 Sum_probs=78.6
Q ss_pred ccccccceEEEcccccccc-ccC--CCCCCCccEEEcccccccccccchHhhcC-CCCcEEEeecCCCCccCCccccCCC
Q 036236 447 VKGWENVRRLSLMQNQIET-LSE--VPTCPHLLTLFLDFNQELEMIADGFFQFM-PSLKVLKISNCGNIFQLPVGMSKLG 522 (557)
Q Consensus 447 ~~~~~~l~~l~l~~~~~~~-~~~--~~~~~~L~~L~l~~~~~~~~~p~~~~~~l-~~L~~L~Ls~~~~~~~lP~~i~~L~ 522 (557)
+..+++++.|++++|.+.. +|. ...+++|+.|++++|...+.+|. .+ ++|++|+|++| .++.+|..+..++
T Consensus 399 ~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~l~~~L~~L~L~~N-~l~~ip~~~~~l~ 473 (562)
T 3a79_B 399 TKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR----CLPPKVKVLDLHNN-RIMSIPKDVTHLQ 473 (562)
T ss_dssp TTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGS----SCCTTCSEEECCSS-CCCCCCTTTTSSC
T ss_pred hcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhh----hhcCcCCEEECCCC-cCcccChhhcCCC
Confidence 3455666666666666655 443 24566667777766662233333 23 68999999999 8999999999999
Q ss_pred CCCeeeccCCCCcccChH-HHhHhhhhhcCCCCCC
Q 036236 523 SLELLDISHTFIKELPEE-LKKLLEAIQRAPRPDR 556 (557)
Q Consensus 523 ~L~~L~l~~n~l~~lP~~-i~~L~~L~~L~~~~~~ 556 (557)
+|++|+|++|+++.+|.. +..+++|+.|+++++.
T Consensus 474 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 474 ALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred CCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCC
Confidence 999999999999999998 8999999999888774
No 133
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.82 E-value=4.8e-09 Score=116.10 Aligned_cols=100 Identities=21% Similarity=0.216 Sum_probs=47.6
Q ss_pred cceEEEccccccccccCC-C--CCCCccEEEcccccccccccchHhhcCCCCcEEEeec------CCCCccCCccccCCC
Q 036236 452 NVRRLSLMQNQIETLSEV-P--TCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISN------CGNIFQLPVGMSKLG 522 (557)
Q Consensus 452 ~l~~l~l~~~~~~~~~~~-~--~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~------~~~~~~lP~~i~~L~ 522 (557)
+++.|++++|.+..+|.. . .+++|+.|+|++|. +..+|.. +..+++|+.|+|++ |...+.+|..+++|+
T Consensus 729 ~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~~-l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~ 806 (876)
T 4ecn_A 729 LLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNC-FSSFPTQ-PLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP 806 (876)
T ss_dssp GCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSC-CSSCCCG-GGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCS
T ss_pred CccEEECCCCCCccchHHhhhccCCCcCEEEeCCCC-CCccchh-hhcCCCCCEEECCCCCCcccccccccChHHHhcCC
Confidence 455555555555444433 2 44555555555554 3344444 44455555555543 211234455555555
Q ss_pred CCCeeeccCCCCcccChHHHhHhhhhhcCCCCC
Q 036236 523 SLELLDISHTFIKELPEELKKLLEAIQRAPRPD 555 (557)
Q Consensus 523 ~L~~L~l~~n~l~~lP~~i~~L~~L~~L~~~~~ 555 (557)
+|++|+|++|++..+|..+. ++|+.|+++++
T Consensus 807 ~L~~L~Ls~N~L~~Ip~~l~--~~L~~LdLs~N 837 (876)
T 4ecn_A 807 SLIQLQIGSNDIRKVDEKLT--PQLYILDIADN 837 (876)
T ss_dssp SCCEEECCSSCCCBCCSCCC--SSSCEEECCSC
T ss_pred CCCEEECCCCCCCccCHhhc--CCCCEEECCCC
Confidence 55555555555555555443 34555554444
No 134
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.82 E-value=4.4e-09 Score=109.65 Aligned_cols=107 Identities=24% Similarity=0.297 Sum_probs=70.9
Q ss_pred ccccccceEEEccccccccccCC--CCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccC-CccccCCCC
Q 036236 447 VKGWENVRRLSLMQNQIETLSEV--PTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQL-PVGMSKLGS 523 (557)
Q Consensus 447 ~~~~~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~l-P~~i~~L~~ 523 (557)
+..+++|++|++++|.+..+|.. ..+++|+.|++++|. +..+++..|.++++|++|+|++| .+..+ |..++.+++
T Consensus 76 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~ 153 (477)
T 2id5_A 76 FNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNS 153 (477)
T ss_dssp TTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTTCTT
T ss_pred hhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCc-cccCChhHccccccCCEEECCCC-ccceeChhhccCCCC
Confidence 45566777777777777666542 567777777777776 55554444677777777777777 56554 456777777
Q ss_pred CCeeeccCCCCcccChH-HHhHhhhhhcCCCCC
Q 036236 524 LELLDISHTFIKELPEE-LKKLLEAIQRAPRPD 555 (557)
Q Consensus 524 L~~L~l~~n~l~~lP~~-i~~L~~L~~L~~~~~ 555 (557)
|++|+|++|.++.+|.. +.++++|+.|+++.+
T Consensus 154 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 186 (477)
T 2id5_A 154 LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL 186 (477)
T ss_dssp CCEEEEESCCCSSCCHHHHTTCTTCCEEEEESC
T ss_pred CCEEECCCCcCcccChhHhcccCCCcEEeCCCC
Confidence 77777777777776653 666666666665543
No 135
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.81 E-value=9.2e-09 Score=106.85 Aligned_cols=114 Identities=21% Similarity=0.283 Sum_probs=87.3
Q ss_pred cCCCcccCCcccccccceEEEccccccccccCCCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCc
Q 036236 437 AGAGLKEAPAVKGWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPV 516 (557)
Q Consensus 437 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~ 516 (557)
.+..+..++.+..+++++.|++++|.+..++....+++|+.|++++|. +..++. +..+++|++|+|++| .+..+|.
T Consensus 229 ~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~L~~n-~l~~~~~ 304 (466)
T 1o6v_A 229 NGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQ-ISNISP--LAGLTALTNLELNEN-QLEDISP 304 (466)
T ss_dssp CSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSC-CCCCGG--GTTCTTCSEEECCSS-CCSCCGG
T ss_pred CCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCc-cCcccc--ccCCCccCeEEcCCC-cccCchh
Confidence 344455556666777888888888887777667778888888888887 666665 677888888888888 7777765
Q ss_pred cccCCCCCCeeeccCCCCcccChHHHhHhhhhhcCCCCCC
Q 036236 517 GMSKLGSLELLDISHTFIKELPEELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 517 ~i~~L~~L~~L~l~~n~l~~lP~~i~~L~~L~~L~~~~~~ 556 (557)
++.+++|++|+|++|+++.+++ +..+++|+.|++++++
T Consensus 305 -~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~ 342 (466)
T 1o6v_A 305 -ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNK 342 (466)
T ss_dssp -GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSC
T ss_pred -hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCc
Confidence 7888888888888888887766 7788888888887664
No 136
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.80 E-value=9.7e-09 Score=108.41 Aligned_cols=107 Identities=30% Similarity=0.401 Sum_probs=79.1
Q ss_pred EEEcCCCcccCCcccccccceEEEccccccccccCCCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCcc
Q 036236 434 LVRAGAGLKEAPAVKGWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQ 513 (557)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~ 513 (557)
+...++.+..+|.+.. +++.|++++|.+..+|. .+++|+.|++++|. +..+|. .+++|++|+|++| .++.
T Consensus 105 L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~-l~~lp~----~l~~L~~L~Ls~N-~L~~ 174 (571)
T 3cvr_A 105 LDACDNRLSTLPELPA--SLKHLDVDNNQLTMLPE--LPALLEYINADNNQ-LTMLPE----LPTSLEVLSVRNN-QLTF 174 (571)
T ss_dssp EECCSSCCSCCCCCCT--TCCEEECCSSCCSCCCC--CCTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSS-CCSC
T ss_pred EEccCCCCCCcchhhc--CCCEEECCCCcCCCCCC--cCccccEEeCCCCc-cCcCCC----cCCCcCEEECCCC-CCCC
Confidence 3334445555555322 78888888888887776 67888888888887 777776 4678889999888 7888
Q ss_pred CCccccCCCCCCeeeccCCCCcccChHHHhHhhh-------hhcCCCCCC
Q 036236 514 LPVGMSKLGSLELLDISHTFIKELPEELKKLLEA-------IQRAPRPDR 556 (557)
Q Consensus 514 lP~~i~~L~~L~~L~l~~n~l~~lP~~i~~L~~L-------~~L~~~~~~ 556 (557)
+|. ++ ++|++|+|++|+|+.+|. +.. +| +.|++++++
T Consensus 175 lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~ 218 (571)
T 3cvr_A 175 LPE-LP--ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENR 218 (571)
T ss_dssp CCC-CC--TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSC
T ss_pred cch-hh--CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCc
Confidence 887 66 889999999998888888 654 66 888877764
No 137
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.79 E-value=1.3e-08 Score=101.25 Aligned_cols=100 Identities=14% Similarity=0.178 Sum_probs=86.1
Q ss_pred EEEcccc-ccccccCCCCCCCccEEEccc-ccccccccchHhhcCCCCcEEEeecCCCCccCCc-cccCCCCCCeeeccC
Q 036236 455 RLSLMQN-QIETLSEVPTCPHLLTLFLDF-NQELEMIADGFFQFMPSLKVLKISNCGNIFQLPV-GMSKLGSLELLDISH 531 (557)
Q Consensus 455 ~l~l~~~-~~~~~~~~~~~~~L~~L~l~~-~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~-~i~~L~~L~~L~l~~ 531 (557)
.++++++ .+..+|....+++|+.|+|++ |. +..+|...|..+++|++|+|++| .++.+|+ .|++|++|++|+|++
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQH-LQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSS-CCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCC-CCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCC
Confidence 4677777 888888888889999999997 76 88899777999999999999999 8887754 789999999999999
Q ss_pred CCCcccChHHHhHhhhhhcCCCCCC
Q 036236 532 TFIKELPEELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 532 n~l~~lP~~i~~L~~L~~L~~~~~~ 556 (557)
|+|+.+|..+....+|+.|+++++.
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred CccceeCHHHcccCCceEEEeeCCC
Confidence 9999999876554459998888764
No 138
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.79 E-value=6.3e-09 Score=115.04 Aligned_cols=107 Identities=24% Similarity=0.355 Sum_probs=72.4
Q ss_pred ccccccceEEEcccccccc-ccC-CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCc-cCCccccCCCC
Q 036236 447 VKGWENVRRLSLMQNQIET-LSE-VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIF-QLPVGMSKLGS 523 (557)
Q Consensus 447 ~~~~~~l~~l~l~~~~~~~-~~~-~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~-~lP~~i~~L~~ 523 (557)
+..+++++.|++++|.+.. +|. ...+++|+.|++++|...+.+|.. +.++++|++|+|++| .+. .+|..++.+++
T Consensus 438 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~ 515 (768)
T 3rgz_A 438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG-LSNCTNLNWISLSNN-RLTGEIPKWIGRLEN 515 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSS-CCCSCCCGGGGGCTT
T ss_pred HhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHH-HhcCCCCCEEEccCC-ccCCcCChHHhcCCC
Confidence 3445566666666666652 332 256677777777777633455555 777777777777777 554 67777777777
Q ss_pred CCeeeccCCCCc-ccChHHHhHhhhhhcCCCCC
Q 036236 524 LELLDISHTFIK-ELPEELKKLLEAIQRAPRPD 555 (557)
Q Consensus 524 L~~L~l~~n~l~-~lP~~i~~L~~L~~L~~~~~ 555 (557)
|++|+|++|+++ .+|..++++++|+.|+++++
T Consensus 516 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548 (768)
T ss_dssp CCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred CCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence 777777777776 57777777777777777665
No 139
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.79 E-value=5.4e-09 Score=112.42 Aligned_cols=106 Identities=18% Similarity=0.152 Sum_probs=49.7
Q ss_pred cccccceEEEccccccccccC--CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCC-ccccCCCCC
Q 036236 448 KGWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLP-VGMSKLGSL 524 (557)
Q Consensus 448 ~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP-~~i~~L~~L 524 (557)
..++++++|++++|.+..++. ...+++|++|++++|. +..++...++++++|++|+|++| .+..++ +.+..+++|
T Consensus 78 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L 155 (606)
T 3t6q_A 78 QSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKL 155 (606)
T ss_dssp TTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSC-CSCGGGSCCTTCTTCCEEECCSS-CCCCCCCCTTCCCTTC
T ss_pred cCccccCeeeCCCCcccccChhhhcccccccEeeccccC-cccCCcchhccCCcccEEECCCC-cccccCcccccCCccc
Confidence 344445555555544443321 2444555555555554 44432222455555555555555 444431 222235555
Q ss_pred CeeeccCCCCccc-ChHHHhHhhhh--hcCCCCC
Q 036236 525 ELLDISHTFIKEL-PEELKKLLEAI--QRAPRPD 555 (557)
Q Consensus 525 ~~L~l~~n~l~~l-P~~i~~L~~L~--~L~~~~~ 555 (557)
++|++++|.++.+ |..++.+++|+ .|+++++
T Consensus 156 ~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n 189 (606)
T 3t6q_A 156 KVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN 189 (606)
T ss_dssp CEEECCSSCCCEECHHHHHTTTTCCSEEEECTTC
T ss_pred CEEEcccCcccccChhhhhhhcccceeEEecCCC
Confidence 5555555555554 33455555555 4444443
No 140
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.78 E-value=1.4e-08 Score=108.42 Aligned_cols=95 Identities=21% Similarity=0.242 Sum_probs=56.0
Q ss_pred ccceEEEccccccccccCCCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCccccCCCCCCeeecc
Q 036236 451 ENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVGMSKLGSLELLDIS 530 (557)
Q Consensus 451 ~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~i~~L~~L~~L~l~ 530 (557)
++++.|.+++|.+..+|. .+++|+.|++++|. +..+|. .+++|++|+|++| .++.+|. .+++|++|+|+
T Consensus 201 ~~L~~L~L~~N~l~~l~~--~~~~L~~L~Ls~N~-L~~lp~----~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls 269 (622)
T 3g06_A 201 SELYKLWAYNNRLTSLPA--LPSGLKELIVSGNR-LTSLPV----LPSELKELMVSGN-RLTSLPM---LPSGLLSLSVY 269 (622)
T ss_dssp TTCCEEECCSSCCSSCCC--CCTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECC
T ss_pred chhhEEECcCCcccccCC--CCCCCCEEEccCCc-cCcCCC----CCCcCcEEECCCC-CCCcCCc---ccccCcEEeCC
Confidence 455555555555555443 23556666666665 555552 3456666666666 6666665 45566666666
Q ss_pred CCCCcccChHHHhHhhhhhcCCCCCC
Q 036236 531 HTFIKELPEELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 531 ~n~l~~lP~~i~~L~~L~~L~~~~~~ 556 (557)
+|+|+.+|.+++++++|+.|++++++
T Consensus 270 ~N~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 270 RNQLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp SSCCCSCCGGGGGSCTTCEEECCSCC
T ss_pred CCCCCcCCHHHhhccccCEEEecCCC
Confidence 66666666666666666666665543
No 141
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.77 E-value=9.1e-09 Score=92.75 Aligned_cols=46 Identities=20% Similarity=0.372 Sum_probs=40.9
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..++||+++++++.+.+. ....+.+.|+|++|+|||++|+.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~-~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQ-RRTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CCCCSCHHHHHHHHHHHT-SSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHh-cCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999998 4556778999999999999999998876
No 142
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.75 E-value=1.4e-08 Score=112.37 Aligned_cols=109 Identities=17% Similarity=0.244 Sum_probs=89.0
Q ss_pred cccccccceEEEcccccccc-ccC-CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCc-cCCccccCCC
Q 036236 446 AVKGWENVRRLSLMQNQIET-LSE-VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIF-QLPVGMSKLG 522 (557)
Q Consensus 446 ~~~~~~~l~~l~l~~~~~~~-~~~-~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~-~lP~~i~~L~ 522 (557)
.+..+++++.|++++|.+.. +|. ...+++|+.|++++|...+.+|.. +..+++|++|+|++| .+. .+|..+++++
T Consensus 413 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~ 490 (768)
T 3rgz_A 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE-LMYVKTLETLILDFN-DLTGEIPSGLSNCT 490 (768)
T ss_dssp GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSS-CCCSCCCGGGGGCT
T ss_pred HHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHH-HcCCCCceEEEecCC-cccCcCCHHHhcCC
Confidence 35567788888888888764 333 377888999999988844567766 888999999999999 665 7888999999
Q ss_pred CCCeeeccCCCCc-ccChHHHhHhhhhhcCCCCCC
Q 036236 523 SLELLDISHTFIK-ELPEELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 523 ~L~~L~l~~n~l~-~lP~~i~~L~~L~~L~~~~~~ 556 (557)
+|++|+|++|+++ .+|.+++++++|++|++++++
T Consensus 491 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 525 (768)
T 3rgz_A 491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 525 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred CCCEEEccCCccCCcCChHHhcCCCCCEEECCCCc
Confidence 9999999999988 689999999999999988775
No 143
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.73 E-value=3.2e-08 Score=105.77 Aligned_cols=80 Identities=28% Similarity=0.273 Sum_probs=41.4
Q ss_pred cccceEEEccccccccccCCCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCccccCCCCCCeeec
Q 036236 450 WENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVGMSKLGSLELLDI 529 (557)
Q Consensus 450 ~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~i~~L~~L~~L~l 529 (557)
+++|+.|++++|.+..+|. .+++|+.|++++|. +..+|. .+++|++|++++| .++.+|.. +++|++|+|
T Consensus 80 l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~-l~~l~~----~l~~L~~L~L~~N-~l~~lp~~---l~~L~~L~L 148 (622)
T 3g06_A 80 PPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNP-LTHLPA----LPSGLCKLWIFGN-QLTSLPVL---PPGLQELSV 148 (622)
T ss_dssp CTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCC-CCCCCC----CCTTCCEEECCSS-CCSCCCCC---CTTCCEEEC
T ss_pred CCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCc-CCCCCC----CCCCcCEEECCCC-CCCcCCCC---CCCCCEEEC
Confidence 3445555555555444443 44455555555554 444443 2445555555555 45555543 256666666
Q ss_pred cCCCCcccChH
Q 036236 530 SHTFIKELPEE 540 (557)
Q Consensus 530 ~~n~l~~lP~~ 540 (557)
++|+++.+|..
T Consensus 149 s~N~l~~l~~~ 159 (622)
T 3g06_A 149 SDNQLASLPAL 159 (622)
T ss_dssp CSSCCSCCCCC
T ss_pred cCCcCCCcCCc
Confidence 66666665543
No 144
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.72 E-value=2.5e-08 Score=102.94 Aligned_cols=107 Identities=23% Similarity=0.282 Sum_probs=57.1
Q ss_pred CCCcccCCcccccccceEEEccccccccccCCCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCcc
Q 036236 438 GAGLKEAPAVKGWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVG 517 (557)
Q Consensus 438 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~ 517 (557)
+..+..+|.+..++++++|++++|.+..+|.. ..+|++|++++|. +..+| . ++++++|++|++++| .++.+|..
T Consensus 140 ~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~~n~-l~~l~-~-~~~l~~L~~L~l~~N-~l~~l~~~ 213 (454)
T 1jl5_A 140 NNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQ-LEELP-E-LQNLPFLTAIYADNN-SLKKLPDL 213 (454)
T ss_dssp SSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSC-CSSCC-C-CTTCTTCCEEECCSS-CCSSCCCC
T ss_pred CCCCCCCcccCCCCCCCEEECCCCcCcccCCC--cccccEEECcCCc-CCcCc-c-ccCCCCCCEEECCCC-cCCcCCCC
Confidence 33444455566666666666666666655433 2366666666665 44555 2 555666666555555 45544432
Q ss_pred ccCCCCCCeeeccCCCCcccChHHHhHhhhhhcCCCC
Q 036236 518 MSKLGSLELLDISHTFIKELPEELKKLLEAIQRAPRP 554 (557)
Q Consensus 518 i~~L~~L~~L~l~~n~l~~lP~~i~~L~~L~~L~~~~ 554 (557)
. .+|++|++++|.++.+|. ++++++|++|++++
T Consensus 214 ~---~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~ 246 (454)
T 1jl5_A 214 P---LSLESIVAGNNILEELPE-LQNLPFLTTIYADN 246 (454)
T ss_dssp C---TTCCEEECCSSCCSSCCC-CTTCTTCCEEECCS
T ss_pred c---CcccEEECcCCcCCcccc-cCCCCCCCEEECCC
Confidence 2 244555555555555542 44555555554444
No 145
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.71 E-value=9.2e-09 Score=114.95 Aligned_cols=107 Identities=21% Similarity=0.195 Sum_probs=53.4
Q ss_pred ccccccceEEEcccccc-ccc-c-CCCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCcc-CCcc--ccC
Q 036236 447 VKGWENVRRLSLMQNQI-ETL-S-EVPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQ-LPVG--MSK 520 (557)
Q Consensus 447 ~~~~~~l~~l~l~~~~~-~~~-~-~~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~-lP~~--i~~ 520 (557)
+..+++|++|++++|.. ..+ | ...++++|++|+|++|. +..+++..|+++++|++|+|++| .+.. +|.. +++
T Consensus 44 ~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~ 121 (844)
T 3j0a_A 44 FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFLHPDAFQGLFHLFELRLYFC-GLSDAVLKDGYFRN 121 (844)
T ss_dssp CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-CCEECTTSSCSCSSCCCEECTTC-CCSSCCSTTCCCSS
T ss_pred CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-CcccCHhHccCCcccCEeeCcCC-CCCcccccCccccc
Confidence 44555555666655522 222 1 12455555555555555 44443223555555555555555 4432 3333 555
Q ss_pred CCCCCeeeccCCCCccc--ChHHHhHhhhhhcCCCCC
Q 036236 521 LGSLELLDISHTFIKEL--PEELKKLLEAIQRAPRPD 555 (557)
Q Consensus 521 L~~L~~L~l~~n~l~~l--P~~i~~L~~L~~L~~~~~ 555 (557)
|++|++|+|++|.++.+ |..+++|++|++|+++++
T Consensus 122 L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp CSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred cCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence 55555555555555543 234555555555554443
No 146
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.70 E-value=1.4e-08 Score=95.33 Aligned_cols=173 Identities=9% Similarity=0.080 Sum_probs=101.3
Q ss_pred Ccccch---hHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHH
Q 036236 90 PTIVGL---QSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGK 166 (557)
Q Consensus 90 ~~~vGr---~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 166 (557)
..|+|. +..++.+..++. .+..+.+.|+|++|+|||++|+.+++.... ....+.|+.++..... +..
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~-~~~~~~~ll~G~~G~GKT~la~~l~~~~~~---~~~~~~~~~~~~~~~~------~~~ 97 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAAS-GDGVQAIYLWGPVKSGRTHLIHAACARANE---LERRSFYIPLGIHASI------STA 97 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHH-TCSCSEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEEGGGGGGS------CGG
T ss_pred hhccCCCCCHHHHHHHHHHHh-CCCCCeEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEEEHHHHHHH------HHH
Confidence 457763 355666666665 446788999999999999999999988721 1234566665432110 000
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCccc----cccccccCCCC-CCCCcEEEEeeCChH-------
Q 036236 167 KIGLFDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWERVD----LTKVGVPLPGP-QNTTSKVVFTTRSID------- 234 (557)
Q Consensus 167 ~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~l~~~l~~~-~~~~s~iliTtR~~~------- 234 (557)
.+ +.+ .++.+|||||++.... ...+...+... ..+..++|+||+...
T Consensus 98 ~~--------------------~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~ 156 (242)
T 3bos_A 98 LL--------------------EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVL 156 (242)
T ss_dssp GG--------------------TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCC
T ss_pred HH--------------------Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhh
Confidence 00 011 3467999999964321 12222211110 112134777776322
Q ss_pred --HHhcccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHHH
Q 036236 235 --VCGSMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTIG 296 (557)
Q Consensus 235 --v~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~ 296 (557)
+...+.....+.+.+++.++..+++...+........ .+....+++.++|.+-.+..+.
T Consensus 157 ~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 157 PDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLP---EDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp HHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCC---HHHHHHHHHHTTTCHHHHHHHH
T ss_pred hhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHccCCHHHHHHHH
Confidence 1222222367899999999999999887643221122 3567789999999887665443
No 147
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.67 E-value=3.6e-08 Score=101.74 Aligned_cols=81 Identities=27% Similarity=0.395 Sum_probs=37.8
Q ss_pred cceEEEccccccccccCCCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCccccCCCCCCeeeccC
Q 036236 452 NVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPVGMSKLGSLELLDISH 531 (557)
Q Consensus 452 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~~i~~L~~L~~L~l~~ 531 (557)
++++|++++|.+..+|....+++|++|++++|. +..+|.. +.+|++|++++| .++.+| +++++++|++|++++
T Consensus 132 ~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~-l~~lp~~----~~~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~l~~ 204 (454)
T 1jl5_A 132 LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNS-LKKLPDL----PPSLEFIAAGNN-QLEELP-ELQNLPFLTAIYADN 204 (454)
T ss_dssp TCCEEECCSSCCSSCCCCTTCTTCCEEECCSSC-CSCCCCC----CTTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCS
T ss_pred CCCEEECcCCCCCCCcccCCCCCCCEEECCCCc-CcccCCC----cccccEEECcCC-cCCcCc-cccCCCCCCEEECCC
Confidence 444444444444444444444444444444444 3334432 124445555544 444444 345555555555555
Q ss_pred CCCcccCh
Q 036236 532 TFIKELPE 539 (557)
Q Consensus 532 n~l~~lP~ 539 (557)
|+++.+|.
T Consensus 205 N~l~~l~~ 212 (454)
T 1jl5_A 205 NSLKKLPD 212 (454)
T ss_dssp SCCSSCCC
T ss_pred CcCCcCCC
Confidence 55544443
No 148
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.65 E-value=4.1e-07 Score=87.63 Aligned_cols=178 Identities=20% Similarity=0.239 Sum_probs=102.2
Q ss_pred CcccchhHHHHHHHHHHhc------------cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCH
Q 036236 90 PTIVGLQSQLEQVWRCLVV------------EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRL 157 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~------------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 157 (557)
..++|.++.+++|.+.+.. -...+.+.|+|++|+|||+||+.+++.. ... .+.+..+.-..
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~---~~~---~~~v~~~~~~~- 89 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET---NAT---FIRVVGSELVK- 89 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT---TCE---EEEEEGGGGCC-
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCC---EEEEehHHHHH-
Confidence 5689999999999888752 1356779999999999999999999886 222 22222211100
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHH-HHHhcCCcEEEEEccCCCcc------------c----cccccccCCC-C
Q 036236 158 EKIQEDIGKKIGLFDDSWKSKSVEEKAVDI-FRSLREKRFVLLLDDIWERV------------D----LTKVGVPLPG-P 219 (557)
Q Consensus 158 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l-~~~l~~k~~LlVlDdv~~~~------------~----~~~l~~~l~~-~ 219 (557)
. .. .........+ ......++.+|+|||++... . +..+...+.. .
T Consensus 90 -------------~---~~-~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 152 (285)
T 3h4m_A 90 -------------K---FI-GEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFD 152 (285)
T ss_dssp -------------C---ST-THHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTC
T ss_pred -------------h---cc-chHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCC
Confidence 0 00 1111222222 22334567899999995320 0 1111111111 1
Q ss_pred CCCCcEEEEeeCChHH-----HhcccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCC-CchHHH
Q 036236 220 QNTTSKVVFTTRSIDV-----CGSMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDG-LPLALL 293 (557)
Q Consensus 220 ~~~~s~iliTtR~~~v-----~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~PLai~ 293 (557)
..++..||.||..... .....-...+.+++.+.++..+++...+.........+ ...+++.+.| .|-.+.
T Consensus 153 ~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~----~~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 153 ARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVN----LEEIAKMTEGCVGAELK 228 (285)
T ss_dssp SSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHHCTTCCHHHHH
T ss_pred CCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCC----HHHHHHHcCCCCHHHHH
Confidence 1222677778875432 11111224689999999999999998876544333333 3567777777 454444
Q ss_pred HH
Q 036236 294 TI 295 (557)
Q Consensus 294 ~~ 295 (557)
.+
T Consensus 229 ~l 230 (285)
T 3h4m_A 229 AI 230 (285)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 149
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.64 E-value=8.1e-09 Score=104.43 Aligned_cols=105 Identities=19% Similarity=0.247 Sum_probs=79.7
Q ss_pred ccccceEEEccccccc------ccc-CCCCCCCccEEEccccccc-----ccccchHhhcCCCCcEEEeecCCCCcc---
Q 036236 449 GWENVRRLSLMQNQIE------TLS-EVPTCPHLLTLFLDFNQEL-----EMIADGFFQFMPSLKVLKISNCGNIFQ--- 513 (557)
Q Consensus 449 ~~~~l~~l~l~~~~~~------~~~-~~~~~~~L~~L~l~~~~~~-----~~~p~~~~~~l~~L~~L~Ls~~~~~~~--- 513 (557)
.+++++.|++++|.+. -.+ ....+++|+.|+|++|. + ..+|.. +..+++|++|+|++| .++.
T Consensus 185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~-l~~~~~L~~L~L~~n-~i~~~~~ 261 (386)
T 2ca6_A 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIA-LKSWPNLRELGLNDC-LLSARGA 261 (386)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHH-GGGCTTCCEEECTTC-CCCHHHH
T ss_pred hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHHH-HccCCCcCEEECCCC-CCchhhH
Confidence 4567888888888876 233 44678888888888887 4 456664 778888888888888 6653
Q ss_pred --CCccc--cCCCCCCeeeccCCCCcc-----cChHH-HhHhhhhhcCCCCCC
Q 036236 514 --LPVGM--SKLGSLELLDISHTFIKE-----LPEEL-KKLLEAIQRAPRPDR 556 (557)
Q Consensus 514 --lP~~i--~~L~~L~~L~l~~n~l~~-----lP~~i-~~L~~L~~L~~~~~~ 556 (557)
+|..+ +++++|++|+|++|.++. +|..+ .++++|++|++++++
T Consensus 262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 46666 448888888888888886 88887 667888888887764
No 150
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.63 E-value=6.3e-08 Score=99.15 Aligned_cols=184 Identities=18% Similarity=0.150 Sum_probs=104.8
Q ss_pred Cccc-chhH--HHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHH
Q 036236 90 PTIV-GLQS--QLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGK 166 (557)
Q Consensus 90 ~~~v-Gr~~--~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 166 (557)
..|+ |... ....+.......+....+.|+|++|+||||||+.+++..... ..-..+++++.. .+..++..
T Consensus 105 d~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~-~~~~~v~~v~~~------~~~~~~~~ 177 (440)
T 2z4s_A 105 ENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQN-EPDLRVMYITSE------KFLNDLVD 177 (440)
T ss_dssp GGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHH-CCSSCEEEEEHH------HHHHHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHh-CCCCeEEEeeHH------HHHHHHHH
Confidence 3455 6443 333444444422226789999999999999999999876211 101134455432 23344444
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCccc----cccccccCCC-CCCCCcEEEEeeCCh--------
Q 036236 167 KIGLFDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWERVD----LTKVGVPLPG-PQNTTSKVVFTTRSI-------- 233 (557)
Q Consensus 167 ~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~l~~~l~~-~~~~~s~iliTtR~~-------- 233 (557)
.+... .. ..+...+..+.-+|+|||++.... .+.+...+.. ...+ ..||+||.+.
T Consensus 178 ~~~~~-------~~----~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~-~~iIitt~~~~~~l~~l~ 245 (440)
T 2z4s_A 178 SMKEG-------KL----NEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSG-KQIVICSDREPQKLSEFQ 245 (440)
T ss_dssp HHHTT-------CH----HHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTT-CEEEEEESSCGGGCSSCC
T ss_pred HHHcc-------cH----HHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCC-CeEEEEECCCHHHHHHHH
Confidence 43211 11 123334443677999999964321 2222222211 1223 6788888763
Q ss_pred -HHHhcccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHH
Q 036236 234 -DVCGSMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTI 295 (557)
Q Consensus 234 -~v~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 295 (557)
.+...+.....+.+++++.++..+++.+.+.......++ +....|++.++|.+-.+..+
T Consensus 246 ~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~---e~l~~la~~~~gn~R~l~~~ 305 (440)
T 2z4s_A 246 DRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPE---EVLNFVAENVDDNLRRLRGA 305 (440)
T ss_dssp HHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHCCSCHHHHHHH
T ss_pred HHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHhcCCCHHHHHHH
Confidence 223334444678999999999999998876432222222 35678889999988655433
No 151
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.61 E-value=9.4e-08 Score=95.25 Aligned_cols=193 Identities=12% Similarity=0.142 Sum_probs=107.2
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcc-eEEEEEeCCccCHHHHHHHHHHHh
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFD-CVIWVVVSKDLRLEKIQEDIGKKI 168 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l 168 (557)
..++|+++.++.+..++. .+....+.|+|++|+||||+|+.+++.... ...+. .++.+..+.......+...+....
T Consensus 37 ~~i~g~~~~~~~l~~~l~-~~~~~~~ll~G~~G~GKT~la~~la~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLK-SANLPHMLFYGPPGTGKTSTILALTKELYG-PDLMKSRILELNASDERGISIVREKVKNFA 114 (353)
T ss_dssp TTCCSCCTTHHHHHHHTT-CTTCCCEEEECSTTSSHHHHHHHHHHHHHH-HHHHTTSEEEECSSSCCCHHHHTTHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHh-cCCCCEEEEECCCCCCHHHHHHHHHHHhCC-CcccccceEEEccccccchHHHHHHHHHHh
Confidence 468999999999999998 443344899999999999999999887510 00011 223333333222222211111111
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCcc--ccccccccCCCCCCCCcEEEEeeCChHH-Hhc-ccCCCc
Q 036236 169 GLFDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWERV--DLTKVGVPLPGPQNTTSKVVFTTRSIDV-CGS-MESHRK 244 (557)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~~~s~iliTtR~~~v-~~~-~~~~~~ 244 (557)
..... ..... .....-.+++-+|++|+++... ....+...+...... .++|++|....- ... ......
T Consensus 115 ~~~~~--~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~-~~~il~~~~~~~l~~~l~sR~~~ 186 (353)
T 1sxj_D 115 RLTVS--KPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGV-TRFCLICNYVTRIIDPLASQCSK 186 (353)
T ss_dssp HSCCC--CCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTT-EEEEEEESCGGGSCHHHHHHSEE
T ss_pred hhccc--ccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCC-ceEEEEeCchhhCcchhhccCce
Confidence 00000 00000 0001112355799999986432 222333333222233 677777754331 110 111247
Q ss_pred eecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHH
Q 036236 245 FPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTI 295 (557)
Q Consensus 245 ~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 295 (557)
+.+.+++.++....+...+.......+ .+..+.|++.++|.|..+..+
T Consensus 187 i~~~~~~~~~~~~~l~~~~~~~~~~i~---~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 187 FRFKALDASNAIDRLRFISEQENVKCD---DGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHTSSCHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 899999999999999887644332222 357789999999998765443
No 152
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.58 E-value=8.9e-07 Score=90.48 Aligned_cols=175 Identities=18% Similarity=0.148 Sum_probs=103.4
Q ss_pred CcccchhHHH---HHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCc-cCHHHHHHHHH
Q 036236 90 PTIVGLQSQL---EQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKD-LRLEKIQEDIG 165 (557)
Q Consensus 90 ~~~vGr~~~~---~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~ 165 (557)
..++|.+..+ ..|...+. .+....+.|+|++|+||||+|+.+++.. ...| +.++.. .....+ +.++
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~-~~~~~~vLL~GppGtGKTtlAr~ia~~~---~~~f-----~~l~a~~~~~~~i-r~~~ 95 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIE-AGHLHSMILWGPPGTGKTTLAEVIARYA---NADV-----ERISAVTSGVKEI-REAI 95 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHH-HTCCCEEEEECSTTSSHHHHHHHHHHHT---TCEE-----EEEETTTCCHHHH-HHHH
T ss_pred HHhCCcHHHHhchHHHHHHHH-cCCCcEEEEECCCCCcHHHHHHHHHHHh---CCCe-----EEEEeccCCHHHH-HHHH
Confidence 5689999888 67777777 5566789999999999999999999986 2222 222221 112111 1111
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHH-HHhcCCcEEEEEccCCCc--cccccccccCCCCCCCCcEEEE-eeCChHH---Hhc
Q 036236 166 KKIGLFDDSWKSKSVEEKAVDIF-RSLREKRFVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVF-TTRSIDV---CGS 238 (557)
Q Consensus 166 ~~l~~~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~ili-TtR~~~v---~~~ 238 (557)
.... ....+++.+|+||+++.. .....+...+.. +...+|. ||.+... ...
T Consensus 96 -------------------~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~---~~v~lI~att~n~~~~l~~aL 153 (447)
T 3pvs_A 96 -------------------ERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED---GTITFIGATTENPSFELNSAL 153 (447)
T ss_dssp -------------------HHHHHHHHTTCCEEEEEETTTCC------CCHHHHHT---TSCEEEEEESSCGGGSSCHHH
T ss_pred -------------------HHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc---CceEEEecCCCCcccccCHHH
Confidence 1111 112467889999999643 233444444433 2134444 5555431 111
Q ss_pred ccCCCceecCCCCHHHHHHHHHHHhCCCcc----CCCccHHHHHHHHHHHhCCCchHHHHHH
Q 036236 239 MESHRKFPVACLSEEDAWELFREKVGQETL----ESHHDIVELAQTVARECDGLPLALLTIG 296 (557)
Q Consensus 239 ~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~----~~~~~~~~~~~~i~~~~~G~PLai~~~~ 296 (557)
......+.+.+++.++...++.+.+..... ....--.+..+.|++.++|.+-.+..+.
T Consensus 154 ~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 154 LSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp HTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred hCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 223447889999999999999887643110 0011123567888889999886554443
No 153
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.58 E-value=3.6e-07 Score=95.68 Aligned_cols=189 Identities=11% Similarity=0.048 Sum_probs=105.4
Q ss_pred CcccchhHHHHHHHHHHhcc----------------CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCC
Q 036236 90 PTIVGLQSQLEQVWRCLVVE----------------ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSK 153 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~----------------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 153 (557)
..++|++..++++.+++... +..+.+.|+|++|+|||++|+.+++.. . + .++.+..+.
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l---~--~-~~i~in~s~ 112 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL---G--Y-DILEQNASD 112 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT---T--C-EEEEECTTS
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc---C--C-CEEEEeCCC
Confidence 46899999999999998730 134789999999999999999999886 1 2 233444444
Q ss_pred ccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCccc-----cccccccCCCCCCCCcEEEE
Q 036236 154 DLRLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWERVD-----LTKVGVPLPGPQNTTSKVVF 228 (557)
Q Consensus 154 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-----~~~l~~~l~~~~~~~s~ili 228 (557)
..... +....+....... ... .-...... .....+++.+||||+++.... +..+...+.. .+ ..||+
T Consensus 113 ~~~~~-~~~~~i~~~~~~~-~~~-~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~-~~iIl 184 (516)
T 1sxj_A 113 VRSKT-LLNAGVKNALDNM-SVV-GYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TS-TPLIL 184 (516)
T ss_dssp CCCHH-HHHHTGGGGTTBC-CST-TTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CS-SCEEE
T ss_pred cchHH-HHHHHHHHHhccc-cHH-HHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cC-CCEEE
Confidence 33332 2222222111000 000 00000000 001235788999999964321 1222222221 12 34555
Q ss_pred eeCChH---HHhcccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCc-hHHHHH
Q 036236 229 TTRSID---VCGSMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLP-LALLTI 295 (557)
Q Consensus 229 TtR~~~---v~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-Lai~~~ 295 (557)
++.... +.........+.+.+++.++..+++...+.......++ +....|++.++|.+ .++..+
T Consensus 185 i~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~---~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 185 ICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP---NVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp EESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHTTTCHHHHHHHH
T ss_pred EEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHHHH
Confidence 544322 22212223468999999999999888766433322222 35678899999955 445444
No 154
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.56 E-value=1.8e-08 Score=99.78 Aligned_cols=105 Identities=13% Similarity=0.204 Sum_probs=47.3
Q ss_pred cccceEEEcccccccc-c-cCCCCCCCccEEEccccccccc--ccchHhhcCCCCcEEEeecCCCCcc--CCccccCCC-
Q 036236 450 WENVRRLSLMQNQIET-L-SEVPTCPHLLTLFLDFNQELEM--IADGFFQFMPSLKVLKISNCGNIFQ--LPVGMSKLG- 522 (557)
Q Consensus 450 ~~~l~~l~l~~~~~~~-~-~~~~~~~~L~~L~l~~~~~~~~--~p~~~~~~l~~L~~L~Ls~~~~~~~--lP~~i~~L~- 522 (557)
++++++|++++|.+.. . .....+++|+.|++++|..+.. ++.. +.++++|++|+|++|..++. +|..++.++
T Consensus 117 ~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~ 195 (336)
T 2ast_B 117 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE 195 (336)
T ss_dssp BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCCHHHHHHHHHHSCT
T ss_pred CCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcChHHHHHHHHhccc
Confidence 3444444444444331 1 1123345555555555422221 2222 44455555555555433332 344455555
Q ss_pred CCCeeeccCCC--C--cccChHHHhHhhhhhcCCCCC
Q 036236 523 SLELLDISHTF--I--KELPEELKKLLEAIQRAPRPD 555 (557)
Q Consensus 523 ~L~~L~l~~n~--l--~~lP~~i~~L~~L~~L~~~~~ 555 (557)
+|++|+|++|. + ..+|..+.++++|++|+++++
T Consensus 196 ~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 232 (336)
T 2ast_B 196 TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDS 232 (336)
T ss_dssp TCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTC
T ss_pred CCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCC
Confidence 55555555552 2 234555555555555555544
No 155
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.51 E-value=2.1e-06 Score=82.06 Aligned_cols=169 Identities=18% Similarity=0.143 Sum_probs=90.9
Q ss_pred CcccchhHHHHHHHHH-------Hhc--cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHH
Q 036236 90 PTIVGLQSQLEQVWRC-------LVV--EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKI 160 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~-------L~~--~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 160 (557)
..++|.+..++++... +.. ....+.+.|+|++|+|||++|+.+++.. ...| +.+..+...
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~---~~i~~~~~~----- 101 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES---NFPF---IKICSPDKM----- 101 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH---TCSE---EEEECGGGC-----
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEeCHHHh-----
Confidence 3578887777666663 221 3466789999999999999999999985 2222 222222100
Q ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCc-----------cc-cccccccCCCC--CCCCcEE
Q 036236 161 QEDIGKKIGLFDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWER-----------VD-LTKVGVPLPGP--QNTTSKV 226 (557)
Q Consensus 161 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~-~~~l~~~l~~~--~~~~s~i 226 (557)
.+.. ...........+......+..+|+|||++.. .. +..+...+... ......|
T Consensus 102 -------~g~~----~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 102 -------IGFS----ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp -------TTCC----HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred -------cCCc----hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 0000 0000011112222233457889999998532 01 11122222211 1121456
Q ss_pred EEeeCChHHHhc---ccC-CCceecCCCCH-HHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCC
Q 036236 227 VFTTRSIDVCGS---MES-HRKFPVACLSE-EDAWELFREKVGQETLESHHDIVELAQTVARECDGL 288 (557)
Q Consensus 227 liTtR~~~v~~~---~~~-~~~~~l~~L~~-~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 288 (557)
|.||........ ... ...+.+++++. ++...++.+... .. .+....|++.+.|.
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~~-----~~---~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGN-----FK---DKERTTIAQQVKGK 229 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHTC-----SC---HHHHHHHHHHHTTS
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcCC-----CC---HHHHHHHHHHhcCC
Confidence 677777654332 111 34688999988 666666655321 11 24567888888884
No 156
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.48 E-value=3.1e-06 Score=83.35 Aligned_cols=170 Identities=15% Similarity=0.121 Sum_probs=100.8
Q ss_pred hhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCC-------------------CcceEEEEEeCCcc
Q 036236 95 LQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPI-------------------NFDCVIWVVVSKDL 155 (557)
Q Consensus 95 r~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~-------------------~f~~~~wv~~~~~~ 155 (557)
.++..+.+.+.+..+.-.+.+.++|++|+|||++|+.+++....... +++ ..++....
T Consensus 7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~-- 83 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEK-- 83 (334)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCT--
T ss_pred hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccc--
Confidence 35567777877773344567999999999999999999887621110 112 12221110
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-----cCCcEEEEEccCCCcc--ccccccccCCCCCCCCcEEEE
Q 036236 156 RLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSL-----REKRFVLLLDDIWERV--DLTKVGVPLPGPQNTTSKVVF 228 (557)
Q Consensus 156 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~~~s~ili 228 (557)
.......++. ..+.+.+ .+++-++|+|+++... ....+...+...... +.+|+
T Consensus 84 ------------------~~~~~~i~~i-r~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~-~~~Il 143 (334)
T 1a5t_A 84 ------------------GKNTLGVDAV-REVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAE-TWFFL 143 (334)
T ss_dssp ------------------TCSSBCHHHH-HHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTT-EEEEE
T ss_pred ------------------cCCCCCHHHH-HHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCC-eEEEE
Confidence 0011122222 1222222 2467799999996532 233344444333333 67777
Q ss_pred eeCChH-H-HhcccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHH
Q 036236 229 TTRSID-V-CGSMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTI 295 (557)
Q Consensus 229 TtR~~~-v-~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 295 (557)
+|.+.. + .........+.+.+++.++..+.+.+.... + .+.+..+++.++|.|..+..+
T Consensus 144 ~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~~-----~---~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 144 ATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREVTM-----S---QDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp EESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCCC-----C---HHHHHHHHHHTTTCHHHHHHT
T ss_pred EeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhcCC-----C---HHHHHHHHHHcCCCHHHHHHH
Confidence 776643 2 111223457899999999999999887511 1 245678999999999766443
No 157
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.48 E-value=3.5e-06 Score=79.86 Aligned_cols=182 Identities=14% Similarity=0.135 Sum_probs=98.4
Q ss_pred CcccchhHHHHHHHHHHhc--c---------CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHH
Q 036236 90 PTIVGLQSQLEQVWRCLVV--E---------ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLE 158 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~--~---------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 158 (557)
..++|.+..++.+.+.+.. . ...+.+.|+|++|+|||++|+.+++.. ... .+.+..+.-.+
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~---~~~---~~~~~~~~~~~-- 77 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA---QVP---FLAMAGAEFVE-- 77 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH---TCC---EEEEETTTTSS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC---EEEechHHHHh--
Confidence 4689999888887665531 1 234678899999999999999999986 222 23333332111
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCcc-------------c----cccccccCCCC-C
Q 036236 159 KIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWERV-------------D----LTKVGVPLPGP-Q 220 (557)
Q Consensus 159 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------------~----~~~l~~~l~~~-~ 220 (557)
.............+.......+.+|+||+++... . +..+...+... .
T Consensus 78 ---------------~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 142 (262)
T 2qz4_A 78 ---------------VIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT 142 (262)
T ss_dssp ---------------SSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT
T ss_pred ---------------hccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC
Confidence 0011111112222223334567899999996431 0 11121111111 1
Q ss_pred CCCcEEEEeeCChHHHh-cc----cCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCch-HHHH
Q 036236 221 NTTSKVVFTTRSIDVCG-SM----ESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPL-ALLT 294 (557)
Q Consensus 221 ~~~s~iliTtR~~~v~~-~~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-ai~~ 294 (557)
..+..||.||....... .+ .-...+.++..+.++-.+++...+...... .........+++.+.|.+- .|..
T Consensus 143 ~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~--~~~~~~~~~l~~~~~g~~~~~l~~ 220 (262)
T 2qz4_A 143 TDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLT--QSSTFYSQRLAELTPGFSGADIAN 220 (262)
T ss_dssp TCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCC--BTHHHHHHHHHHTCTTCCHHHHHH
T ss_pred CCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCC--cchhhHHHHHHHHCCCCCHHHHHH
Confidence 22256666776543211 11 113467889999999999998876433211 1212234678888887654 4444
Q ss_pred HH
Q 036236 295 IG 296 (557)
Q Consensus 295 ~~ 296 (557)
+.
T Consensus 221 l~ 222 (262)
T 2qz4_A 221 IC 222 (262)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 158
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.48 E-value=1.8e-07 Score=93.32 Aligned_cols=195 Identities=10% Similarity=0.100 Sum_probs=102.5
Q ss_pred CcccchhHHHHHHHHHH-hccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCC-C--Ccce--------------------
Q 036236 90 PTIVGLQSQLEQVWRCL-VVEESVGIIGLYGMGGVGKTTLLTHINNKFLENP-I--NFDC-------------------- 145 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L-~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~-~--~f~~-------------------- 145 (557)
..++|++..++.+.+++ . .+....+.|+|++|+||||+|+.+++...... . .++.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~-~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~ 92 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQ-PRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPY 92 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTC-TTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSS
T ss_pred HHhcCCHHHHHHHHHHHhh-CCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccc
Confidence 46899999999999988 5 33333399999999999999999988541111 0 0111
Q ss_pred EEEEEeCCcc-CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCcc--ccccccccCCCCCCC
Q 036236 146 VIWVVVSKDL-RLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWERV--DLTKVGVPLPGPQNT 222 (557)
Q Consensus 146 ~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~~ 222 (557)
.+.+..+... ......++++..+..... ..... .+. .+.+++-++|||++.... ....+...+.....+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~-~ls-~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~ 164 (354)
T 1sxj_E 93 HLEITPSDMGNNDRIVIQELLKEVAQMEQ------VDFQD-SKD-GLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKN 164 (354)
T ss_dssp EEEECCC----CCHHHHHHHHHHHTTTTC--------------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTT
T ss_pred eEEecHhhcCCcchHHHHHHHHHHHHhcc------ccccc-ccc-ccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCC
Confidence 0111111000 000011222222211000 00000 000 023467799999996521 122233323222233
Q ss_pred CcEEEEeeCChH-HH-hcccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHHH
Q 036236 223 TSKVVFTTRSID-VC-GSMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTIG 296 (557)
Q Consensus 223 ~s~iliTtR~~~-v~-~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~ 296 (557)
..+|++|.+.. +. ........+++.+++.++..+.+...+.......+. .+....|++.++|.+-.+..+.
T Consensus 165 -~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 165 -IRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLET--KDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp -EEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECC--SHHHHHHHHHHTTCHHHHHHHH
T ss_pred -CEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHHcCCCHHHHHHHH
Confidence 67777776532 11 111223678999999999999998876433221110 1467789999999987654444
No 159
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.47 E-value=8.8e-08 Score=95.38 Aligned_cols=115 Identities=22% Similarity=0.251 Sum_probs=84.2
Q ss_pred EcCCCcccCCcccccccceEEEccccccccccC--CCCCCCccEEEcccccccccccchHhhcCCCCcE-EEeecCCCCc
Q 036236 436 RAGAGLKEAPAVKGWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKV-LKISNCGNIF 512 (557)
Q Consensus 436 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~-L~Ls~~~~~~ 512 (557)
-.+.+++++|.- -..+++.|++++|.++.+|. +.++++|+.|+|++|...+.+|...|.++++|.. +.+++| .+.
T Consensus 16 C~~~~Lt~iP~~-l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N-~l~ 93 (350)
T 4ay9_X 16 CQESKVTEIPSD-LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN-NLL 93 (350)
T ss_dssp EESTTCCSCCTT-CCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET-TCC
T ss_pred ecCCCCCccCcC-cCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC-ccc
Confidence 345566777642 23578999999999998876 3789999999999998556678777888888765 555566 888
Q ss_pred cC-CccccCCCCCCeeeccCCCCcccChH-HHhHhhhhhcCC
Q 036236 513 QL-PVGMSKLGSLELLDISHTFIKELPEE-LKKLLEAIQRAP 552 (557)
Q Consensus 513 ~l-P~~i~~L~~L~~L~l~~n~l~~lP~~-i~~L~~L~~L~~ 552 (557)
.+ |..+..|++|++|++++|+++.+|.. +..+.++..|++
T Consensus 94 ~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l 135 (350)
T 4ay9_X 94 YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDI 135 (350)
T ss_dssp EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEE
T ss_pred ccCchhhhhccccccccccccccccCCchhhcccchhhhhhh
Confidence 87 45788899999999999988877653 334444444433
No 160
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.47 E-value=4.2e-07 Score=91.07 Aligned_cols=47 Identities=15% Similarity=0.173 Sum_probs=36.8
Q ss_pred CcccchhHHHHHH---HHHHhcc-CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 90 PTIVGLQSQLEQV---WRCLVVE-ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 90 ~~~vGr~~~~~~l---~~~L~~~-~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..|+|++..++.+ .+.+... ...+.+.|+|++|+|||++|+.+++..
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4799999887764 4444422 223689999999999999999999987
No 161
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.47 E-value=9.9e-07 Score=86.70 Aligned_cols=174 Identities=13% Similarity=0.094 Sum_probs=100.1
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhC
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIG 169 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 169 (557)
..++|.+..++.+.+++.......++.+.|++|+|||++|+.+++.. . ..++.++.+.. ....+...+.....
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l---~---~~~~~i~~~~~-~~~~i~~~~~~~~~ 98 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV---N---ADMMFVNGSDC-KIDFVRGPLTNFAS 98 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT---T---EEEEEEETTTC-CHHHHHTHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---C---CCEEEEccccc-CHHHHHHHHHHHHh
Confidence 56899999999999999844455788888999999999999999886 1 12334443321 12211111111000
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCcc---ccccccccCCCCCCCCcEEEEeeCChHH-----HhcccC
Q 036236 170 LFDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWERV---DLTKVGVPLPGPQNTTSKVVFTTRSIDV-----CGSMES 241 (557)
Q Consensus 170 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~~~l~~~l~~~~~~~s~iliTtR~~~v-----~~~~~~ 241 (557)
.. ...+++.++++||++... ....+...+...... .++|+||....- ...
T Consensus 99 ~~------------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~-~~iI~~~n~~~~l~~~l~sR--- 156 (324)
T 3u61_B 99 AA------------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSN-CSIIITANNIDGIIKPLQSR--- 156 (324)
T ss_dssp BC------------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGG-CEEEEEESSGGGSCTTHHHH---
T ss_pred hc------------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCC-cEEEEEeCCccccCHHHHhh---
Confidence 00 012367899999997543 222232222221223 678887775431 222
Q ss_pred CCceecCCCCHHHHHHHHH-------HHhCCCccCCCccHHHHHHHHHHHhCCCchHHHH
Q 036236 242 HRKFPVACLSEEDAWELFR-------EKVGQETLESHHDIVELAQTVARECDGLPLALLT 294 (557)
Q Consensus 242 ~~~~~l~~L~~~ea~~L~~-------~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~ 294 (557)
...+.+++++.++-.+++. ..+.......++ .+....|++.++|.+-.+..
T Consensus 157 ~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~--~~~~~~l~~~~~gd~R~a~~ 214 (324)
T 3u61_B 157 CRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD--MKVVAALVKKNFPDFRKTIG 214 (324)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC--HHHHHHHHHHTCSCTTHHHH
T ss_pred CcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHhCCCCHHHHHH
Confidence 2468999999888443322 222222211111 25677888889888765433
No 162
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.46 E-value=7.5e-08 Score=95.21 Aligned_cols=110 Identities=19% Similarity=0.175 Sum_probs=91.0
Q ss_pred CcccccccceEEEcccccccc--ccC-CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCc--cCCcccc
Q 036236 445 PAVKGWENVRRLSLMQNQIET--LSE-VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIF--QLPVGMS 519 (557)
Q Consensus 445 ~~~~~~~~l~~l~l~~~~~~~--~~~-~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~--~lP~~i~ 519 (557)
+....++++++|++++|.+.. ++. ...+++|+.|++++|......|.. +..+++|++|+|++|..++ .+|..++
T Consensus 87 ~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~~~l~~~~~ 165 (336)
T 2ast_B 87 AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLS 165 (336)
T ss_dssp CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHH
T ss_pred hhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHH-HhcCCCCCEEECCCCCCCCHHHHHHHHh
Confidence 345567899999999998764 443 378999999999999733345554 8889999999999995566 4788899
Q ss_pred CCCCCCeeeccCC-CCcc--cChHHHhHh-hhhhcCCCCC
Q 036236 520 KLGSLELLDISHT-FIKE--LPEELKKLL-EAIQRAPRPD 555 (557)
Q Consensus 520 ~L~~L~~L~l~~n-~l~~--lP~~i~~L~-~L~~L~~~~~ 555 (557)
++++|++|+|++| .++. +|..+.+++ +|++|+++++
T Consensus 166 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 166 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred cCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 9999999999999 8985 788899999 9999999886
No 163
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.44 E-value=7e-07 Score=87.10 Aligned_cols=153 Identities=13% Similarity=0.171 Sum_probs=85.7
Q ss_pred cccchhHHHHHHHHHHhc--------------cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccC
Q 036236 91 TIVGLQSQLEQVWRCLVV--------------EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLR 156 (557)
Q Consensus 91 ~~vGr~~~~~~l~~~L~~--------------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~ 156 (557)
.++|.+..++.|.+.+.. ......+.|+|++|+|||++|+.+++.... .......-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~-~~~~~~~~~~~~~~~-- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHR-LGYVRKGHLVSVTRD-- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHH-TTSSSSCCEEEECGG--
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHh-cCCcCCCcEEEEcHH--
Confidence 489999988888876541 234457999999999999999988877622 111111112333211
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCc-----------cccccccccCCCCCCCCcE
Q 036236 157 LEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWER-----------VDLTKVGVPLPGPQNTTSK 225 (557)
Q Consensus 157 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~l~~~l~~~~~~~s~ 225 (557)
.+.. .... ........+.... +..+|+||+++.. .....+...+...... ..
T Consensus 109 ----------~l~~---~~~g-~~~~~~~~~~~~~--~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~-~~ 171 (309)
T 3syl_A 109 ----------DLVG---QYIG-HTAPKTKEVLKRA--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDD-LV 171 (309)
T ss_dssp ----------GTCC---SSTT-CHHHHHHHHHHHH--TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTT-CE
T ss_pred ----------Hhhh---hccc-ccHHHHHHHHHhc--CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCC-EE
Confidence 0100 0011 1111112222222 3469999999632 1122333333332233 67
Q ss_pred EEEeeCChH----------HHhcccCCCceecCCCCHHHHHHHHHHHhCC
Q 036236 226 VVFTTRSID----------VCGSMESHRKFPVACLSEEDAWELFREKVGQ 265 (557)
Q Consensus 226 iliTtR~~~----------v~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~ 265 (557)
||+||.... +...+ ...+.+++++.++-.+++...+..
T Consensus 172 ~i~~~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 172 VILAGYADRMENFFQSNPGFRSRI--AHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp EEEEECHHHHHHHHHHSTTHHHHE--EEEEEECCCCHHHHHHHHHHHHHH
T ss_pred EEEeCChHHHHHHHhhCHHHHHhC--CeEEEcCCcCHHHHHHHHHHHHHH
Confidence 777776432 22221 257899999999999999877643
No 164
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.41 E-value=1e-06 Score=87.09 Aligned_cols=170 Identities=14% Similarity=0.096 Sum_probs=100.5
Q ss_pred CcccchhHHHHHHHHHHhc----cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHH
Q 036236 90 PTIVGLQSQLEQVWRCLVV----EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIG 165 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~----~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 165 (557)
..|+|++..++++..++.. ......|.|+|++|+|||++|+.+++.. ...| +.+..........+
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~---~~~~---~~~~~~~~~~~~~~----- 97 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM---SANI---KTTAAPMIEKSGDL----- 97 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT---TCCE---EEEEGGGCCSHHHH-----
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh---CCCe---EEecchhccchhHH-----
Confidence 5689999999999988873 2445678999999999999999998876 2222 22322221111111
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCcc--ccccccccCCC------------------CCCCCcE
Q 036236 166 KKIGLFDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWERV--DLTKVGVPLPG------------------PQNTTSK 225 (557)
Q Consensus 166 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~~~l~~------------------~~~~~s~ 225 (557)
...+.. ..+..+|+||+++... ....+...+.. ..++ ..
T Consensus 98 ------------------~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~ 156 (338)
T 3pfi_A 98 ------------------AAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPK-FT 156 (338)
T ss_dssp ------------------HHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCC-CE
T ss_pred ------------------HHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCC-eE
Confidence 111111 2356788888886431 11111111100 0012 45
Q ss_pred EEEeeCChHH-----HhcccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHHH
Q 036236 226 VVFTTRSIDV-----CGSMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTIG 296 (557)
Q Consensus 226 iliTtR~~~v-----~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~ 296 (557)
+|.+|..... ... ....+.+++++.++...++...+....... -.+....|++.+.|+|-.+..+.
T Consensus 157 ~i~atn~~~~l~~~L~~R--~~~~i~l~~~~~~e~~~il~~~~~~~~~~~---~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 157 LIGATTRAGMLSNPLRDR--FGMQFRLEFYKDSELALILQKAALKLNKTC---EEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp EEEEESCGGGSCHHHHTT--CSEEEECCCCCHHHHHHHHHHHHHHTTCEE---CHHHHHHHHHTTTTCHHHHHHHH
T ss_pred EEEeCCCccccCHHHHhh--cCEEeeCCCcCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHCcCHHHHHHHH
Confidence 6666654322 222 135789999999999999988764332111 13567788889999996554443
No 165
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.40 E-value=1.6e-05 Score=77.82 Aligned_cols=180 Identities=17% Similarity=0.203 Sum_probs=103.5
Q ss_pred CcccchhHHHHHHHHHHhc-----------cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHH
Q 036236 90 PTIVGLQSQLEQVWRCLVV-----------EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLE 158 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~-----------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 158 (557)
..++|.+..++.|.+.+.. ....+.|.|+|++|+|||+||+.+++... .. ..+.+..+.-.+
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~--~~---~~~~i~~~~l~~-- 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN--NS---TFFSISSSDLVS-- 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT--SC---EEEEEECCSSCC--
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC--CC---cEEEEEhHHHHh--
Confidence 5689999999888877631 12347899999999999999999998861 11 122333322110
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH-hcCCcEEEEEccCCCccc-------------cccccccCCCC--CCC
Q 036236 159 KIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRS-LREKRFVLLLDDIWERVD-------------LTKVGVPLPGP--QNT 222 (557)
Q Consensus 159 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~-------------~~~l~~~l~~~--~~~ 222 (557)
...... +.....+... -..++.+|+||+++.... ...+...+... ...
T Consensus 85 ---------------~~~g~~-~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 148 (322)
T 1xwi_A 85 ---------------KWLGES-EKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 148 (322)
T ss_dssp ---------------SSCCSC-HHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCT
T ss_pred ---------------hhhhHH-HHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCC
Confidence 001112 2223333332 345788999999964310 01111111111 123
Q ss_pred CcEEEEeeCChH-----HHhcccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCC-chHHHHHH
Q 036236 223 TSKVVFTTRSID-----VCGSMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGL-PLALLTIG 296 (557)
Q Consensus 223 ~s~iliTtR~~~-----v~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLai~~~~ 296 (557)
+..||.||..+. +.+ .-...+.++..+.++-.+++...+........ ......|++.+.|. +-.|..+.
T Consensus 149 ~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~---~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 149 GILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLT---EADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp TEEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCC---HHHHHHHHHTCTTCCHHHHHHHH
T ss_pred CEEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 255665665432 222 22356788889999999999888764432111 24567888999887 44455554
Q ss_pred H
Q 036236 297 R 297 (557)
Q Consensus 297 ~ 297 (557)
.
T Consensus 224 ~ 224 (322)
T 1xwi_A 224 R 224 (322)
T ss_dssp H
T ss_pred H
Confidence 3
No 166
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.39 E-value=1.8e-06 Score=84.80 Aligned_cols=176 Identities=15% Similarity=0.157 Sum_probs=97.1
Q ss_pred Cccc-chh--HHHHHHHHHHhccC-CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHH
Q 036236 90 PTIV-GLQ--SQLEQVWRCLVVEE-SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIG 165 (557)
Q Consensus 90 ~~~v-Gr~--~~~~~l~~~L~~~~-~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 165 (557)
+.|+ |.. .....+...+.... ....+.|+|++|+||||||+.+++..... . ..+++++. ..+...+.
T Consensus 11 ~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~--~-~~~~~i~~------~~~~~~~~ 81 (324)
T 1l8q_A 11 ENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--G-YRVIYSSA------DDFAQAMV 81 (324)
T ss_dssp SSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT--T-CCEEEEEH------HHHHHHHH
T ss_pred ccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC--C-CEEEEEEH------HHHHHHHH
Confidence 3455 533 33444555554222 45789999999999999999999886221 1 12444443 23333333
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCccc----cccccccCCCC-CCCCcEEEEeeCChH------
Q 036236 166 KKIGLFDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWERVD----LTKVGVPLPGP-QNTTSKVVFTTRSID------ 234 (557)
Q Consensus 166 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~l~~~l~~~-~~~~s~iliTtR~~~------ 234 (557)
..+.. .... .+...+. +..+|+|||+..... .+.+...+... ..+ ..||+||.+..
T Consensus 82 ~~~~~-------~~~~----~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~-~~iii~~~~~~~~l~~l 148 (324)
T 1l8q_A 82 EHLKK-------GTIN----EFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLE-KQIILASDRHPQKLDGV 148 (324)
T ss_dssp HHHHH-------TCHH----HHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTT-CEEEEEESSCGGGCTTS
T ss_pred HHHHc-------CcHH----HHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCC-CeEEEEecCChHHHHHh
Confidence 33211 0111 1222222 367999999964321 12222222111 123 56777776431
Q ss_pred ---HHhcccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHH
Q 036236 235 ---VCGSMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLAL 292 (557)
Q Consensus 235 ---v~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai 292 (557)
+...+.....+.+++ +.++..+++...+.......+ .+....|++.+ |..-.+
T Consensus 149 ~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~---~~~l~~l~~~~-g~~r~l 204 (324)
T 1l8q_A 149 SDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELR---KEVIDYLLENT-KNVREI 204 (324)
T ss_dssp CHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCC---HHHHHHHHHHC-SSHHHH
T ss_pred hhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHhC-CCHHHH
Confidence 223333335689999 999999999887643322222 35677888888 776543
No 167
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.38 E-value=4.8e-06 Score=81.61 Aligned_cols=178 Identities=17% Similarity=0.172 Sum_probs=103.3
Q ss_pred CcccchhHHHHHHHHHHhc-----------cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHH
Q 036236 90 PTIVGLQSQLEQVWRCLVV-----------EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLE 158 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~-----------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 158 (557)
..++|.+..++.|.+.+.. ....+.|.|+|++|+|||+||+.+++.. ...| +.+..+
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~~---~~v~~~------ 85 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTF---FSVSSS------ 85 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH---TCEE---EEEEHH------
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH---CCCE---EEEchH------
Confidence 4689999999999988730 1234679999999999999999999886 2222 222221
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH-hcCCcEEEEEccCCCccc-------------cccccccCCC--CCCC
Q 036236 159 KIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRS-LREKRFVLLLDDIWERVD-------------LTKVGVPLPG--PQNT 222 (557)
Q Consensus 159 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~-------------~~~l~~~l~~--~~~~ 222 (557)
.+. .. .....+.....+... -..++.+|+||+++.... ...+...+.. ....
T Consensus 86 ~l~----~~--------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 153 (322)
T 3eie_A 86 DLV----SK--------WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 153 (322)
T ss_dssp HHH----TT--------TGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCC
T ss_pred HHh----hc--------ccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCC
Confidence 111 00 001122223333333 244678999999964211 1112111111 1122
Q ss_pred CcEEEEeeCChHH-----HhcccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCC-chHHHHHH
Q 036236 223 TSKVVFTTRSIDV-----CGSMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGL-PLALLTIG 296 (557)
Q Consensus 223 ~s~iliTtR~~~v-----~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLai~~~~ 296 (557)
+..||.||..+.. .+. -...+.++..+.++-.+++...+........ ......|++.+.|. +-.|..+.
T Consensus 154 ~v~vi~atn~~~~ld~al~~R--f~~~i~~~~p~~~~r~~il~~~~~~~~~~~~---~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 154 GVLVLGATNIPWQLDSAIRRR--FERRIYIPLPDLAARTTMFEINVGDTPCVLT---KEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp CEEEEEEESCGGGSCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHTTCCCCCC---HHHHHHHHHTTTTCCHHHHHHHH
T ss_pred ceEEEEecCChhhCCHHHHcc--cCeEEEeCCCCHHHHHHHHHHHhccCCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 2566667765432 222 2346788889999999999988765432111 23567888888874 54555444
No 168
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.38 E-value=1.7e-07 Score=93.30 Aligned_cols=80 Identities=28% Similarity=0.314 Sum_probs=60.3
Q ss_pred CccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCc-cccCCCCCCeeeccCCCCcccChH-HHhHhhhhhcC
Q 036236 474 HLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPV-GMSKLGSLELLDISHTFIKELPEE-LKKLLEAIQRA 551 (557)
Q Consensus 474 ~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~-~i~~L~~L~~L~l~~n~l~~lP~~-i~~L~~L~~L~ 551 (557)
.++.|++++|. +..+|...| ...+|+.|++++|+.++.+|. .+..+++|++|||++|+|+.+|.. +.+|++|+.++
T Consensus 155 ~l~~L~L~~N~-i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~ 232 (350)
T 4ay9_X 155 ESVILWLNKNG-IQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARS 232 (350)
T ss_dssp SCEEEECCSSC-CCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTT
T ss_pred hhhhhcccccc-ccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhcc
Confidence 46777888877 777777644 456788888876558888876 468889999999999999998875 67777777776
Q ss_pred CCCC
Q 036236 552 PRPD 555 (557)
Q Consensus 552 ~~~~ 555 (557)
.+..
T Consensus 233 ~~~l 236 (350)
T 4ay9_X 233 TYNL 236 (350)
T ss_dssp CTTC
T ss_pred CCCc
Confidence 6554
No 169
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.37 E-value=9.1e-08 Score=96.68 Aligned_cols=104 Identities=13% Similarity=0.187 Sum_probs=84.7
Q ss_pred ccceEEEccccccc--ccc----CCCCCCCccEEEccccccccc-----ccchHhhcCCCCcEEEeecCCCC-----ccC
Q 036236 451 ENVRRLSLMQNQIE--TLS----EVPTCPHLLTLFLDFNQELEM-----IADGFFQFMPSLKVLKISNCGNI-----FQL 514 (557)
Q Consensus 451 ~~l~~l~l~~~~~~--~~~----~~~~~~~L~~L~l~~~~~~~~-----~p~~~~~~l~~L~~L~Ls~~~~~-----~~l 514 (557)
+++++|++++|.+. .++ ....+++|+.|++++|. +.. +.+..+..+++|++|+|++| .+ ..+
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l 236 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSAL 236 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHH
Confidence 58999999999985 333 22578899999999997 541 22213788999999999999 77 678
Q ss_pred CccccCCCCCCeeeccCCCCcc-----cChHHHh--HhhhhhcCCCCCC
Q 036236 515 PVGMSKLGSLELLDISHTFIKE-----LPEELKK--LLEAIQRAPRPDR 556 (557)
Q Consensus 515 P~~i~~L~~L~~L~l~~n~l~~-----lP~~i~~--L~~L~~L~~~~~~ 556 (557)
|..+..+++|++|+|++|.|+. +|..+.. +++|++|+++++.
T Consensus 237 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 237 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred HHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 9999999999999999999885 5777754 8999999998875
No 170
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.37 E-value=6.8e-06 Score=81.72 Aligned_cols=179 Identities=16% Similarity=0.128 Sum_probs=102.8
Q ss_pred CcccchhHHHHHHHHHHhc-----------cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHH
Q 036236 90 PTIVGLQSQLEQVWRCLVV-----------EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLE 158 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~-----------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 158 (557)
..++|.+..+++|.+.+.. ....+.|.|+|++|+|||+||+.+++.. ... .+.+..+.-...
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~---~~~i~~~~l~~~- 156 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS---GAT---FFSISASSLTSK- 156 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT---TCE---EEEEEGGGGCCS-
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc---CCe---EEEEehHHhhcc-
Confidence 4689999999999887741 2346789999999999999999999876 221 233433321110
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH-hcCCcEEEEEccCCCcc-------------ccccccccCCC---CCC
Q 036236 159 KIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRS-LREKRFVLLLDDIWERV-------------DLTKVGVPLPG---PQN 221 (557)
Q Consensus 159 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~-------------~~~~l~~~l~~---~~~ 221 (557)
.. .........+... -..++.+|+||+++... ....+...+.. ...
T Consensus 157 ----------------~~-g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 219 (357)
T 3d8b_A 157 ----------------WV-GEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSE 219 (357)
T ss_dssp ----------------ST-THHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CC
T ss_pred ----------------cc-chHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCC
Confidence 00 0112222222222 23567899999984320 01122222211 112
Q ss_pred CCcEEEEeeCChHH-----HhcccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCC-CchHHHHH
Q 036236 222 TTSKVVFTTRSIDV-----CGSMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDG-LPLALLTI 295 (557)
Q Consensus 222 ~~s~iliTtR~~~v-----~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~PLai~~~ 295 (557)
.+..||.||..... .+. ....+.+...+.++..+++...+........ .+....|++.+.| .+-.|..+
T Consensus 220 ~~v~vI~atn~~~~l~~~l~~R--f~~~i~i~~p~~~~r~~il~~~~~~~~~~l~---~~~l~~la~~t~G~s~~dl~~l 294 (357)
T 3d8b_A 220 DRILVVGATNRPQEIDEAARRR--LVKRLYIPLPEASARKQIVINLMSKEQCCLS---EEEIEQIVQQSDAFSGADMTQL 294 (357)
T ss_dssp CCEEEEEEESCGGGBCHHHHTT--CCEEEECCCCCHHHHHHHHHHHHHTSCBCCC---HHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCEEEEEecCChhhCCHHHHhh--CceEEEeCCcCHHHHHHHHHHHHhhcCCCcc---HHHHHHHHHHcCCCCHHHHHHH
Confidence 22556666654321 221 2246788889999999988877643321111 2467788899988 45556555
Q ss_pred HH
Q 036236 296 GR 297 (557)
Q Consensus 296 ~~ 297 (557)
..
T Consensus 295 ~~ 296 (357)
T 3d8b_A 295 CR 296 (357)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 171
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.35 E-value=2.8e-06 Score=83.99 Aligned_cols=173 Identities=13% Similarity=0.141 Sum_probs=100.0
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcc-eEEEEEeCCccCHHHHHHHHHHHh
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFD-CVIWVVVSKDLRLEKIQEDIGKKI 168 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l 168 (557)
..++|.+..++.|...+. .+....+.++|++|+||||+|+.+++... ...+. .+.-+..+.......
T Consensus 25 ~~~~g~~~~~~~L~~~i~-~g~~~~~ll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~~~~~~~~~~~~~--------- 92 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVD-EGKLPHLLFYGPPGTGKTSTIVALAREIY--GKNYSNMVLELNASDDRGIDV--------- 92 (340)
T ss_dssp GGCCSCHHHHHHHHHHHH-TTCCCCEEEECSSSSSHHHHHHHHHHHHH--TTSHHHHEEEECTTSCCSHHH---------
T ss_pred HHhcCcHHHHHHHHHHHh-cCCCceEEEECCCCCCHHHHHHHHHHHHc--CCCccceEEEEcCcccccHHH---------
Confidence 457899999999988888 44444489999999999999999998862 11111 122222222111111
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHh------cCCcEEEEEccCCCcc--ccccccccCCCCCCCCcEEEEeeCChH-HH-hc
Q 036236 169 GLFDDSWKSKSVEEKAVDIFRSL------REKRFVLLLDDIWERV--DLTKVGVPLPGPQNTTSKVVFTTRSID-VC-GS 238 (557)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~l~~~l------~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~~~s~iliTtR~~~-v~-~~ 238 (557)
....+.... .+.+-++|+|+++... ....+...+...... .++|++|.... +. ..
T Consensus 93 --------------ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~-~~~il~~n~~~~i~~~i 157 (340)
T 1sxj_C 93 --------------VRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKN-TRFCVLANYAHKLTPAL 157 (340)
T ss_dssp --------------HHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTT-EEEEEEESCGGGSCHHH
T ss_pred --------------HHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCC-eEEEEEecCccccchhH
Confidence 111111111 2346789999985421 222232222222223 66777765432 11 11
Q ss_pred ccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHH
Q 036236 239 MESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLAL 292 (557)
Q Consensus 239 ~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai 292 (557)
......+.+.+++.++..+.+...+........ .+..+.+++.++|.+--+
T Consensus 158 ~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~---~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 158 LSQCTRFRFQPLPQEAIERRIANVLVHEKLKLS---PNAEKALIELSNGDMRRV 208 (340)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHTTTCCBC---HHHHHHHHHHHTTCHHHH
T ss_pred HhhceeEeccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 122346889999999999988877633221121 246778899999988744
No 172
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.33 E-value=2.1e-05 Score=76.03 Aligned_cols=178 Identities=15% Similarity=0.164 Sum_probs=100.9
Q ss_pred CcccchhHHHHHHHHHHhc-----------cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHH
Q 036236 90 PTIVGLQSQLEQVWRCLVV-----------EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLE 158 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~-----------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 158 (557)
..++|.+..++.+.+.+.. ....+.+.|+|++|+|||++|+.+++.. ... .+.+..+....
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~---~~~---~~~i~~~~l~~-- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC---SAT---FLNISAASLTS-- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT---TCE---EEEEESTTTSS--
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh---CCC---eEEeeHHHHhh--
Confidence 5689999999999888741 1235789999999999999999999886 222 22333322110
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH-HhcCCcEEEEEccCCCcccc-------------ccccc---cCCCCC-
Q 036236 159 KIQEDIGKKIGLFDDSWKSKSVEEKAVDIFR-SLREKRFVLLLDDIWERVDL-------------TKVGV---PLPGPQ- 220 (557)
Q Consensus 159 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~-------------~~l~~---~l~~~~- 220 (557)
. ...........+.. ....++.+|+||+++....- ..+.. .++...
T Consensus 93 ---------------~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 156 (297)
T 3b9p_A 93 ---------------K-YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPD 156 (297)
T ss_dssp ---------------S-SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC----
T ss_pred ---------------c-ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCC
Confidence 0 01112233333332 23456789999999543110 01111 111111
Q ss_pred CCCcEEEEeeCChH-----HHhcccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCch-HHHH
Q 036236 221 NTTSKVVFTTRSID-----VCGSMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPL-ALLT 294 (557)
Q Consensus 221 ~~~s~iliTtR~~~-----v~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-ai~~ 294 (557)
..+..||.||..+. +.+. ....+.++..+.++...++...+........ ......+++.+.|.+- ++..
T Consensus 157 ~~~v~vi~~tn~~~~l~~~l~~R--~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~---~~~~~~la~~~~g~~~~~l~~ 231 (297)
T 3b9p_A 157 GDRIVVLAATNRPQELDEAALRR--FTKRVYVSLPDEQTRELLLNRLLQKQGSPLD---TEALRRLAKITDGYSGSDLTA 231 (297)
T ss_dssp --CEEEEEEESCGGGBCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHGGGSCCSC---HHHHHHHHHHTTTCCHHHHHH
T ss_pred CCcEEEEeecCChhhCCHHHHhh--CCeEEEeCCcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHcCCCCHHHHHH
Confidence 12255666776543 2222 2245777888888888888776643221111 2456788889998875 5544
Q ss_pred HH
Q 036236 295 IG 296 (557)
Q Consensus 295 ~~ 296 (557)
+.
T Consensus 232 l~ 233 (297)
T 3b9p_A 232 LA 233 (297)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 173
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.31 E-value=7e-06 Score=81.48 Aligned_cols=178 Identities=18% Similarity=0.190 Sum_probs=102.1
Q ss_pred CcccchhHHHHHHHHHHhc-----------cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHH
Q 036236 90 PTIVGLQSQLEQVWRCLVV-----------EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLE 158 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~-----------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 158 (557)
..++|.+..++.|...+.. ....+.|.|+|++|+|||+||+.+++.. ...| +.+..+
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~~~---~~v~~~------ 118 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTF---FSVSSS------ 118 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH---TCEE---EEEEHH------
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCE---EEeeHH------
Confidence 4689999999999887731 1233568899999999999999999987 2222 222221
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH-hcCCcEEEEEccCCCccc-------------cccccccCCC--CCCC
Q 036236 159 KIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRS-LREKRFVLLLDDIWERVD-------------LTKVGVPLPG--PQNT 222 (557)
Q Consensus 159 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~-------------~~~l~~~l~~--~~~~ 222 (557)
.+. ... .... +.....+... -..++.+|+||+++.... ...+...+.. ....
T Consensus 119 ~l~----~~~-------~g~~-~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~ 186 (355)
T 2qp9_X 119 DLV----SKW-------MGES-EKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 186 (355)
T ss_dssp HHH----SCC----------C-HHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---C
T ss_pred HHh----hhh-------cchH-HHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCC
Confidence 111 100 0111 2222233332 345789999999964321 1122111111 1122
Q ss_pred CcEEEEeeCChH-----HHhcccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCC-CchHHHHHH
Q 036236 223 TSKVVFTTRSID-----VCGSMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDG-LPLALLTIG 296 (557)
Q Consensus 223 ~s~iliTtR~~~-----v~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~PLai~~~~ 296 (557)
+..||.||..+. +.+ .-...+.++..+.++-.+++...+........ ......|++.+.| .+-.|..+.
T Consensus 187 ~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~---~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 187 GVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLT---KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp CEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 255666776542 222 22356788999999999999988765432111 2456788889988 454555554
No 174
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.30 E-value=3.2e-07 Score=86.52 Aligned_cols=84 Identities=21% Similarity=0.250 Sum_probs=68.1
Q ss_pred CCCCCccEEEcccccccccccc--hHhhcCCCCcEEEeecCCCCccCCccccCCC--CCCeeeccCCCCcc-cC------
Q 036236 470 PTCPHLLTLFLDFNQELEMIAD--GFFQFMPSLKVLKISNCGNIFQLPVGMSKLG--SLELLDISHTFIKE-LP------ 538 (557)
Q Consensus 470 ~~~~~L~~L~l~~~~~~~~~p~--~~~~~l~~L~~L~Ls~~~~~~~lP~~i~~L~--~L~~L~l~~n~l~~-lP------ 538 (557)
.++++|++|+|++|. +..++. ..+..+++|++|+|++| .++.+ ..+..|. +|++|+|++|.+.. +|
T Consensus 167 ~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGN-ELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTS-CCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred hhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCC-ccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHH
Confidence 468899999999998 666542 34789999999999999 88877 3456666 99999999999874 55
Q ss_pred -hHHHhHhhhhhcCCCCCC
Q 036236 539 -EELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 539 -~~i~~L~~L~~L~~~~~~ 556 (557)
.-+..+++|+.||+..++
T Consensus 244 ~~il~~~P~L~~LDg~~v~ 262 (267)
T 3rw6_A 244 SAIRERFPKLLRLDGHELP 262 (267)
T ss_dssp HHHHHHCTTCCEESSCBCC
T ss_pred HHHHHHCcccCeECCcCCC
Confidence 237789999999988764
No 175
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.28 E-value=2.2e-05 Score=79.06 Aligned_cols=178 Identities=15% Similarity=0.138 Sum_probs=99.6
Q ss_pred CcccchhHHHHHHHHHHhc-----------cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHH
Q 036236 90 PTIVGLQSQLEQVWRCLVV-----------EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLE 158 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~-----------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 158 (557)
..++|.+..++.|..++.. ....+.|.|+|++|+|||+||+.+++.. ... .+.+.++.-..
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~---~~~---~~~v~~~~l~~-- 186 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES---NAT---FFNISAASLTS-- 186 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT---TCE---EEEECSCCC----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh---cCc---EEEeeHHHhhc--
Confidence 4689999999999988731 1235789999999999999999998875 221 22332222111
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH-hcCCcEEEEEccCCCcc--------c-----cccccccC---CCCCC
Q 036236 159 KIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRS-LREKRFVLLLDDIWERV--------D-----LTKVGVPL---PGPQN 221 (557)
Q Consensus 159 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~--------~-----~~~l~~~l---~~~~~ 221 (557)
.. .... ......+... -...+.+|+||+++... . ...+...+ .....
T Consensus 187 ~~---------------~g~~-~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 250 (389)
T 3vfd_A 187 KY---------------VGEG-EKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGD 250 (389)
T ss_dssp --------------------C-HHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC----
T ss_pred cc---------------cchH-HHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCC
Confidence 00 0011 1222222222 23456899999996430 0 01111111 11112
Q ss_pred CCcEEEEeeCChHH-----HhcccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCch-HHHHH
Q 036236 222 TTSKVVFTTRSIDV-----CGSMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPL-ALLTI 295 (557)
Q Consensus 222 ~~s~iliTtR~~~v-----~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-ai~~~ 295 (557)
....||.||..... .+. ....+.+...+.++..+++...+........ .+....|++.+.|..- +|..+
T Consensus 251 ~~v~vI~atn~~~~l~~~l~~R--~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~---~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 251 DRVLVMGATNRPQELDEAVLRR--FIKRVYVSLPNEETRLLLLKNLLCKQGSPLT---QKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp -CEEEEEEESCGGGCCHHHHTT--CCEEEECCCCCHHHHHHHHHHHHTTSCCCSC---HHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCEEEEEecCCchhcCHHHHcC--cceEEEcCCcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHcCCCCHHHHHHH
Confidence 22455656654322 221 1245788999999999999888765432221 2456788888888544 55444
Q ss_pred H
Q 036236 296 G 296 (557)
Q Consensus 296 ~ 296 (557)
.
T Consensus 326 ~ 326 (389)
T 3vfd_A 326 A 326 (389)
T ss_dssp H
T ss_pred H
Confidence 3
No 176
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.28 E-value=2.4e-05 Score=80.08 Aligned_cols=180 Identities=18% Similarity=0.174 Sum_probs=101.7
Q ss_pred CcccchhHHHHHHHHHHhc-----------cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHH
Q 036236 90 PTIVGLQSQLEQVWRCLVV-----------EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLE 158 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~-----------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 158 (557)
..++|.+..++.|...+.. ....+.|.|+|++|+|||+||+.+++... .. -++.++...
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~--~~-----~~~~v~~~~--- 203 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN--NS-----TFFSISSSD--- 203 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC--SS-----EEEEECCC----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC--CC-----CEEEEeHHH---
Confidence 4689999999999887731 12457899999999999999999999861 11 123333221
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCccc-------------cccccccCCCC--CCCC
Q 036236 159 KIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWERVD-------------LTKVGVPLPGP--QNTT 223 (557)
Q Consensus 159 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~l~~~l~~~--~~~~ 223 (557)
+.... .+. ........ +...-..++.+|+||+++.... ...+...+... ...+
T Consensus 204 -l~~~~---~g~-----~~~~~~~~---f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~ 271 (444)
T 2zan_A 204 -LVSKW---LGE-----SEKLVKNL---FQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 271 (444)
T ss_dssp -----------------CCCTHHHH---HHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSS
T ss_pred -HHhhh---cch-----HHHHHHHH---HHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCC
Confidence 11110 110 11112221 1122235788999999964310 11122222221 1232
Q ss_pred cEEEEeeCChHH-----HhcccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCC-chHHHHHH
Q 036236 224 SKVVFTTRSIDV-----CGSMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGL-PLALLTIG 296 (557)
Q Consensus 224 s~iliTtR~~~v-----~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLai~~~~ 296 (557)
..||.||..+.. .+. ....+.++..+.++-..+|..++........ ......|++.+.|. +-.|..+.
T Consensus 272 v~vI~atn~~~~ld~al~rR--f~~~i~i~~P~~~~r~~il~~~l~~~~~~l~---~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 272 ILVLGATNIPWVLDSAIRRR--FEKRIYIPLPEAHARAAMFRLHLGSTQNSLT---EADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp CEEEEEESCGGGSCHHHHTT--CCEEEECCCCCHHHHHHHHHHHHTTSCEECC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEEecCCCccccCHHHHhh--cceEEEeCCcCHHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 666767765432 221 2346778888889999999888765432111 24567888899884 44555544
No 177
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=98.28 E-value=1.7e-06 Score=70.20 Aligned_cols=32 Identities=6% Similarity=0.143 Sum_probs=29.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhHHhhhh
Q 036236 3 RLDRVQRWISRVEVVETEADELIRHGSREIEK 34 (557)
Q Consensus 3 ~~~~v~~Wl~~~~~~~~d~ed~ld~~~~~~~~ 34 (557)
.+++|+.|+++||+++||+|||||+|.++...
T Consensus 53 ~d~~vk~W~~~vrdlaYD~ED~iD~f~~~~~~ 84 (115)
T 3qfl_A 53 LDSQDKLWADEVRELSYVIEDVVDKFLVQVDG 84 (115)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 57899999999999999999999999988763
No 178
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.26 E-value=1e-06 Score=78.65 Aligned_cols=46 Identities=22% Similarity=0.346 Sum_probs=40.8
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..++||+.+++.+.+.+. ....+.+.|+|++|+|||++|+.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~-~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILS-RRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCCSCHHHHHHHHHHHT-SSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHh-CCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999998 4556778999999999999999998876
No 179
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.24 E-value=1.1e-06 Score=87.91 Aligned_cols=106 Identities=16% Similarity=0.109 Sum_probs=64.6
Q ss_pred ccc-cceEEEccccccccccC--CCC-----CCCccEEEcccccccccccchH----hhcC-CCCcEEEeecCCCCccCC
Q 036236 449 GWE-NVRRLSLMQNQIETLSE--VPT-----CPHLLTLFLDFNQELEMIADGF----FQFM-PSLKVLKISNCGNIFQLP 515 (557)
Q Consensus 449 ~~~-~l~~l~l~~~~~~~~~~--~~~-----~~~L~~L~l~~~~~~~~~p~~~----~~~l-~~L~~L~Ls~~~~~~~lP 515 (557)
.++ +++.|++++|.+..... ... +++|+.|++++|. +...+... +..+ ++|++|+|++| .++..+
T Consensus 48 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~ 125 (362)
T 3goz_A 48 NTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKS 125 (362)
T ss_dssp TCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSC
T ss_pred hCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCC-cCCcHH
Confidence 444 67777777777665321 111 2777777777777 54444321 3333 67777888777 666554
Q ss_pred c-c----ccC-CCCCCeeeccCCCCc-----ccChHHHhHh-hhhhcCCCCCC
Q 036236 516 V-G----MSK-LGSLELLDISHTFIK-----ELPEELKKLL-EAIQRAPRPDR 556 (557)
Q Consensus 516 ~-~----i~~-L~~L~~L~l~~n~l~-----~lP~~i~~L~-~L~~L~~~~~~ 556 (557)
. . +.. .++|++|+|++|.++ .++..+..+. +|++|++++++
T Consensus 126 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 178 (362)
T 3goz_A 126 SSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN 178 (362)
T ss_dssp HHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred HHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC
Confidence 3 2 333 257888888887776 4555555554 77777777654
No 180
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.22 E-value=1.8e-05 Score=76.63 Aligned_cols=175 Identities=14% Similarity=0.187 Sum_probs=100.2
Q ss_pred CcccchhHHHHHHHHHHhc------------cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCH
Q 036236 90 PTIVGLQSQLEQVWRCLVV------------EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRL 157 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~------------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 157 (557)
..++|.+..+++|.+++.. -...+.|.|+|++|+|||+||+.+++.. ... ++.++ .
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~---~~~-----~i~v~----~ 82 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QAN-----FISIK----G 82 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT---TCE-----EEEEC----H
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh---CCC-----EEEEE----h
Confidence 4689999998888887651 1356789999999999999999999986 222 12222 2
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCccc----------------cccccccCCC-CC
Q 036236 158 EKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWERVD----------------LTKVGVPLPG-PQ 220 (557)
Q Consensus 158 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~l~~~l~~-~~ 220 (557)
..+.... .+.. .......+.......+.+|+||+++.... ...+...+.. ..
T Consensus 83 ~~l~~~~---~g~~--------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 151 (301)
T 3cf0_A 83 PELLTMW---FGES--------EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 151 (301)
T ss_dssp HHHHHHH---HTTC--------TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT
T ss_pred HHHHhhh---cCch--------HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC
Confidence 2333222 1211 11122223333345789999999963110 1122222211 11
Q ss_pred CCCcEEEEeeCChHHHh--cc---cCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchH
Q 036236 221 NTTSKVVFTTRSIDVCG--SM---ESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLA 291 (557)
Q Consensus 221 ~~~s~iliTtR~~~v~~--~~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa 291 (557)
..+..||.||..+.... .. .-...+.++..+.++-.+++...+.........++ ..++..+.|.|-+
T Consensus 152 ~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~----~~la~~~~g~sg~ 223 (301)
T 3cf0_A 152 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL----EFLAKMTNGFSGA 223 (301)
T ss_dssp TSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHTCSSCCHH
T ss_pred CCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchH----HHHHHHcCCCCHH
Confidence 22256777776553221 11 12346889999999999999887765442223332 3455667776643
No 181
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.19 E-value=1.4e-05 Score=82.53 Aligned_cols=150 Identities=14% Similarity=0.144 Sum_probs=82.0
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCC--CCc-c-eEEEEEeCCccCHHHHHHHHH
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENP--INF-D-CVIWVVVSKDLRLEKIQEDIG 165 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~--~~f-~-~~~wv~~~~~~~~~~~~~~i~ 165 (557)
..++||+.+++.+...+. .....-+.|+|++|+|||++|+.++....... ... + .++.++++ .
T Consensus 180 d~iiGr~~~i~~l~~~l~-r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~------------~ 246 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLS-RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG------------T 246 (468)
T ss_dssp CCCCCCHHHHHHHHHHHH-CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------------
T ss_pred CCccCcHHHHHHHHHHHh-ccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC------------c
Confidence 458999999999999997 44555678999999999999999998862110 000 1 12222222 0
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCccccccccccCCCCCCCCcEEEEeeCChHHHh-------c
Q 036236 166 KKIGLFDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWERVDLTKVGVPLPGPQNTTSKVVFTTRSIDVCG-------S 238 (557)
Q Consensus 166 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~s~iliTtR~~~v~~-------~ 238 (557)
...+. ....... .+...-..++.+|++|. .......+...+. .+..++|.+|....... .
T Consensus 247 ~~~g~-----~e~~~~~---~~~~~~~~~~~iLfiD~--~~~a~~~L~~~L~---~g~v~vI~at~~~e~~~~~~~~~al 313 (468)
T 3pxg_A 247 KYRGE-----FEDRLKK---VMDEIRQAGNIILFIDA--AIDASNILKPSLA---RGELQCIGATTLDEYRKYIEKDAAL 313 (468)
T ss_dssp -----------CTTHHH---HHHHHHTCCCCEEEECC----------CCCTT---SSSCEEEEECCTTTTHHHHTTCSHH
T ss_pred cccch-----HHHHHHH---HHHHHHhcCCeEEEEeC--chhHHHHHHHhhc---CCCEEEEecCCHHHHHHHhhcCHHH
Confidence 00000 0011111 22222235678999992 1112222333332 23356666665443110 0
Q ss_pred ccCCCceecCCCCHHHHHHHHHHHhCC
Q 036236 239 MESHRKFPVACLSEEDAWELFREKVGQ 265 (557)
Q Consensus 239 ~~~~~~~~l~~L~~~ea~~L~~~~~~~ 265 (557)
......+.+++.+.++..+++......
T Consensus 314 ~~Rf~~i~v~~p~~e~~~~iL~~~~~~ 340 (468)
T 3pxg_A 314 ERRFQPIQVDQPSVDESIQILQGLRDR 340 (468)
T ss_dssp HHSEEEEECCCCCHHHHHHHHHHTTTT
T ss_pred HHhCccceeCCCCHHHHHHHHHHHHHH
Confidence 112236899999999999999876643
No 182
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.16 E-value=1.3e-06 Score=87.35 Aligned_cols=103 Identities=16% Similarity=0.146 Sum_probs=77.5
Q ss_pred ccceEEEccccccccccCC------CC-CCCccEEEcccccccc-----cccchHhhcCC-CCcEEEeecCCCCccCC-c
Q 036236 451 ENVRRLSLMQNQIETLSEV------PT-CPHLLTLFLDFNQELE-----MIADGFFQFMP-SLKVLKISNCGNIFQLP-V 516 (557)
Q Consensus 451 ~~l~~l~l~~~~~~~~~~~------~~-~~~L~~L~l~~~~~~~-----~~p~~~~~~l~-~L~~L~Ls~~~~~~~lP-~ 516 (557)
++++.|++++|.+...+.. .. +++|+.|++++|. +. .++.. +..++ +|++|+|++| .++..+ .
T Consensus 109 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~-l~~~~~~L~~L~Ls~n-~l~~~~~~ 185 (362)
T 3goz_A 109 FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQI-LAAIPANVNSLNLRGN-NLASKNCA 185 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHH-HHTSCTTCCEEECTTS-CGGGSCHH
T ss_pred CCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHH-HhcCCccccEeeecCC-CCchhhHH
Confidence 6899999999998765431 23 4699999999997 55 33333 45555 8999999999 787553 3
Q ss_pred ----cccCC-CCCCeeeccCCCCcc-----cChHHHhH-hhhhhcCCCCCC
Q 036236 517 ----GMSKL-GSLELLDISHTFIKE-----LPEELKKL-LEAIQRAPRPDR 556 (557)
Q Consensus 517 ----~i~~L-~~L~~L~l~~n~l~~-----lP~~i~~L-~~L~~L~~~~~~ 556 (557)
.+..+ ++|++|+|++|.|+. +|..+..+ ++|++|+++++.
T Consensus 186 ~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 236 (362)
T 3goz_A 186 ELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC 236 (362)
T ss_dssp HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC
T ss_pred HHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC
Confidence 34445 599999999999987 78888774 589999988764
No 183
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.13 E-value=4.9e-05 Score=75.37 Aligned_cols=172 Identities=19% Similarity=0.230 Sum_probs=99.5
Q ss_pred CcccchhHHHHHHHHHHhc------------cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCH
Q 036236 90 PTIVGLQSQLEQVWRCLVV------------EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRL 157 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~------------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 157 (557)
..+.|-++.+++|.+.+.- -...+-|.++|++|+|||.||+++++.. ...| +.+..+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~---~~~f---~~v~~s~l~s- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT---DCKF---IRVSGAELVQ- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH---TCEE---EEEEGGGGSC-
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh---CCCc---eEEEhHHhhc-
Confidence 3467899888888776541 1345779999999999999999999987 2222 2333222110
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH-hcCCcEEEEEccCCCcc----------c------cccccccCCCC-
Q 036236 158 EKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRS-LREKRFVLLLDDIWERV----------D------LTKVGVPLPGP- 219 (557)
Q Consensus 158 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~----------~------~~~l~~~l~~~- 219 (557)
.+.. ..+.....+... -...+++|++|+++... + +..++..+.+.
T Consensus 221 ----------------k~vG-ese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 283 (405)
T 4b4t_J 221 ----------------KYIG-EGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE 283 (405)
T ss_dssp ----------------SSTT-HHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT
T ss_pred ----------------cccc-hHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC
Confidence 0011 112222223222 24578999999996321 0 11122222221
Q ss_pred CCCCcEEEEeeCChHH-----HhcccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCc
Q 036236 220 QNTTSKVVFTTRSIDV-----CGSMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLP 289 (557)
Q Consensus 220 ~~~~s~iliTtR~~~v-----~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 289 (557)
...+..||.||..+.. .+.-.-+..+.++..+.++-.++|..+..........+ ...|++.+.|.-
T Consensus 284 ~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 284 TSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp CCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSCC
T ss_pred CCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCCC
Confidence 1222456667765432 22223456789999999999999988876554333334 346677787753
No 184
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.11 E-value=3.2e-06 Score=72.27 Aligned_cols=46 Identities=24% Similarity=0.244 Sum_probs=37.2
Q ss_pred cccchhHHHHHHHHHHhc-cCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 91 TIVGLQSQLEQVWRCLVV-EESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 91 ~~vGr~~~~~~l~~~L~~-~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
.++|++..+.++.+.+.. .....-|.|+|++|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 579999999999988763 2344568899999999999999998875
No 185
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.07 E-value=2.4e-06 Score=84.09 Aligned_cols=98 Identities=15% Similarity=0.156 Sum_probs=87.6
Q ss_pred cccceEEEccccccccccCC--CCCCCccEEEcccccccccccchHhhcCCCCc-EEEeecCCCCccCC-ccccCCCCCC
Q 036236 450 WENVRRLSLMQNQIETLSEV--PTCPHLLTLFLDFNQELEMIADGFFQFMPSLK-VLKISNCGNIFQLP-VGMSKLGSLE 525 (557)
Q Consensus 450 ~~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~-~L~Ls~~~~~~~lP-~~i~~L~~L~ 525 (557)
+++++.+++++|.+..++.. .+|++|+.+.+..| +..++...|.++.+|+ .|++.+ .++.++ ..|.+|.+|+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLR 300 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCC
Confidence 56899999999999988765 78999999999997 8889999999999999 999988 477885 6899999999
Q ss_pred eeeccCCCCcccCh-HHHhHhhhhhcC
Q 036236 526 LLDISHTFIKELPE-ELKKLLEAIQRA 551 (557)
Q Consensus 526 ~L~l~~n~l~~lP~-~i~~L~~L~~L~ 551 (557)
.|++++|+++.++. .+.++++|+.++
T Consensus 301 ~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 301 YVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EEEeCCCccCccchhhhcCCcchhhhc
Confidence 99999999999987 588899998875
No 186
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.06 E-value=1.2e-05 Score=89.38 Aligned_cols=154 Identities=15% Similarity=0.215 Sum_probs=85.0
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCC--CCc-c-eEEEEEeCCccCHHHHHHHHH
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENP--INF-D-CVIWVVVSKDLRLEKIQEDIG 165 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~--~~f-~-~~~wv~~~~~~~~~~~~~~i~ 165 (557)
..++||++++..++..|. ......+.|+|++|+|||++|+.+++...... ... + .+++++++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~-~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~--------- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILL-RRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA--------- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHH-CSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC--------------
T ss_pred cccCCcHHHHHHHHHHHh-cCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc---------
Confidence 458999999999999998 44555678999999999999999988762110 111 1 233443321100
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHhc--CCcEEEEEccCCCcc---------cc-ccccccCCCCCCCCcEEEEeeCCh
Q 036236 166 KKIGLFDDSWKSKSVEEKAVDIFRSLR--EKRFVLLLDDIWERV---------DL-TKVGVPLPGPQNTTSKVVFTTRSI 233 (557)
Q Consensus 166 ~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~---------~~-~~l~~~l~~~~~~~s~iliTtR~~ 233 (557)
+.. .....+.....+...+. +++.+|++|++.... +. ..+...+. .+...+|.+|...
T Consensus 240 ---g~~----~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~---~~~i~~I~at~~~ 309 (854)
T 1qvr_A 240 ---GAK----YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA---RGELRLIGATTLD 309 (854)
T ss_dssp -------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH---TTCCCEEEEECHH
T ss_pred ---cCc----cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh---CCCeEEEEecCch
Confidence 000 11123333334434333 367999999996432 11 11222221 1225566666544
Q ss_pred HHH-----h-cccCCCceecCCCCHHHHHHHHHHHh
Q 036236 234 DVC-----G-SMESHRKFPVACLSEEDAWELFREKV 263 (557)
Q Consensus 234 ~v~-----~-~~~~~~~~~l~~L~~~ea~~L~~~~~ 263 (557)
... . .......+.+++++.++..+++....
T Consensus 310 ~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 310 EYREIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp HHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred HHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 321 1 11123458999999999999987543
No 187
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.06 E-value=8.1e-07 Score=91.84 Aligned_cols=107 Identities=15% Similarity=0.146 Sum_probs=76.0
Q ss_pred ccccccceEEEccccccccc--cCC-CCCC----CccEEEcccccccc-----cccchHhhcCCCCcEEEeecCCCCccC
Q 036236 447 VKGWENVRRLSLMQNQIETL--SEV-PTCP----HLLTLFLDFNQELE-----MIADGFFQFMPSLKVLKISNCGNIFQL 514 (557)
Q Consensus 447 ~~~~~~l~~l~l~~~~~~~~--~~~-~~~~----~L~~L~l~~~~~~~-----~~p~~~~~~l~~L~~L~Ls~~~~~~~l 514 (557)
+..++++++|++++|.+... ... ..++ +|++|++++|. +. .++.. +..+++|++|+|++| .++..
T Consensus 52 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~-l~~~~~L~~L~Ls~n-~i~~~ 128 (461)
T 1z7x_W 52 LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSST-LRTLPTLQELHLSDN-LLGDA 128 (461)
T ss_dssp HHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHH-TTSCTTCCEEECCSS-BCHHH
T ss_pred HHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCC-CCHHHHHHHHHH-HccCCceeEEECCCC-cCchH
Confidence 44557899999998887542 111 2233 79999999987 54 33444 788899999999998 66532
Q ss_pred -Cccc-----cCCCCCCeeeccCCCCcc-----cChHHHhHhhhhhcCCCCCC
Q 036236 515 -PVGM-----SKLGSLELLDISHTFIKE-----LPEELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 515 -P~~i-----~~L~~L~~L~l~~n~l~~-----lP~~i~~L~~L~~L~~~~~~ 556 (557)
+..+ ..+++|++|+|++|+++. +|..+..+++|++|+++++.
T Consensus 129 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 181 (461)
T 1z7x_W 129 GLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC
Confidence 2222 235679999999998874 56777888999999888764
No 188
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.05 E-value=8.9e-05 Score=69.90 Aligned_cols=178 Identities=18% Similarity=0.172 Sum_probs=94.0
Q ss_pred CcccchhHHHHHHHHHHhc--c---------CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHH
Q 036236 90 PTIVGLQSQLEQVWRCLVV--E---------ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLE 158 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~--~---------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 158 (557)
..++|.+..++++.+.+.. . ...+-+.|+|++|+||||+|+.+++.. ...| +.+..+.-.+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~---~~i~~~~~~~-- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGSDFVE-- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH---TCCE---EEECSCSSTT--
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCCE---EEEeHHHHHH--
Confidence 5689999888777665431 1 124568899999999999999999886 2222 3332221100
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCccc----------------cccccccCCC-CCC
Q 036236 159 KIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWERVD----------------LTKVGVPLPG-PQN 221 (557)
Q Consensus 159 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~l~~~l~~-~~~ 221 (557)
.............+.......+.++++|+++.... ...+...+.. ...
T Consensus 84 ---------------~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 148 (257)
T 1lv7_A 84 ---------------MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN 148 (257)
T ss_dssp ---------------SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS
T ss_pred ---------------HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccC
Confidence 00111222222233333345678999999842110 0111111111 112
Q ss_pred CCcEEEEeeCChHHH-hcc----cCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCC-CchHHHH
Q 036236 222 TTSKVVFTTRSIDVC-GSM----ESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDG-LPLALLT 294 (557)
Q Consensus 222 ~~s~iliTtR~~~v~-~~~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~PLai~~ 294 (557)
.+..||.||..+... ..+ .-...+.++..+.++-.+++...+.......... ...++..+.| .+--|..
T Consensus 149 ~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~----~~~la~~~~G~~~~dl~~ 223 (257)
T 1lv7_A 149 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID----AAIIARGTPGFSGADLAN 223 (257)
T ss_dssp SCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCCHHHHHH
T ss_pred CCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcccc----HHHHHHHcCCCCHHHHHH
Confidence 225666677654321 111 1134677888888888888887765433222222 2346666777 5544443
No 189
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.03 E-value=1.7e-05 Score=76.57 Aligned_cols=147 Identities=17% Similarity=0.150 Sum_probs=87.8
Q ss_pred chhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCC-CCcceEEEEEeCC-ccCHHHHHHHHHHHhCCC
Q 036236 94 GLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENP-INFDCVIWVVVSK-DLRLEKIQEDIGKKIGLF 171 (557)
Q Consensus 94 Gr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~-~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~ 171 (557)
|.++.++.|.+.+. .+..+...++|++|+||||+|+.+++...... .+.+ ..++..+. ...+.++ +++.+.+...
T Consensus 1 g~~~~~~~L~~~i~-~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~i-r~li~~~~~~ 77 (305)
T 2gno_A 1 GAKDQLETLKRIIE-KSEGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDDI-RTIKDFLNYS 77 (305)
T ss_dssp ---CHHHHHHHHHH-TCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHHH-HHHHHHHTSC
T ss_pred ChHHHHHHHHHHHH-CCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHHH-HHHHHHHhhc
Confidence 45566778888887 44477899999999999999999987531111 2333 34444332 2233222 3344433221
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCc--cccccccccCCCCCCCCcEEEEeeCChH-HHhcccCCCceecC
Q 036236 172 DDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTRSID-VCGSMESHRKFPVA 248 (557)
Q Consensus 172 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~iliTtR~~~-v~~~~~~~~~~~l~ 248 (557)
+ ..+++-++|+|+++.. .....++..+...... +.+|++|.++. +....... .+++.
T Consensus 78 p------------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~-t~fIl~t~~~~kl~~tI~SR-~~~f~ 137 (305)
T 2gno_A 78 P------------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEY-AVIVLNTRRWHYLLPTIKSR-VFRVV 137 (305)
T ss_dssp C------------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTT-EEEEEEESCGGGSCHHHHTT-SEEEE
T ss_pred c------------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCC-eEEEEEECChHhChHHHHce-eEeCC
Confidence 1 1245678999999643 2334454444333334 77777765542 32222333 89999
Q ss_pred CCCHHHHHHHHHHHh
Q 036236 249 CLSEEDAWELFREKV 263 (557)
Q Consensus 249 ~L~~~ea~~L~~~~~ 263 (557)
++++++..+.+.+..
T Consensus 138 ~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 138 VNVPKEFRDLVKEKI 152 (305)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998876
No 190
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.03 E-value=1.3e-05 Score=76.27 Aligned_cols=153 Identities=17% Similarity=0.154 Sum_probs=81.9
Q ss_pred CcccchhHHHHHHHHHHhc-----------cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHH
Q 036236 90 PTIVGLQSQLEQVWRCLVV-----------EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLE 158 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~-----------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 158 (557)
..++|.+..++++.+.+.. ....+-+.|+|++|+|||++|+.+++... ..|- .+..+.-.+.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~---~~~~---~v~~~~~~~~- 83 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAH---VPFF---SMGGSSFIEM- 83 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHT---CCCC---CCCSCTTTTS-
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhC---CCEE---EechHHHHHh-
Confidence 5689999888877776541 12234588999999999999999999861 2221 1111110000
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCcc-----------------ccccccccCCCCC-
Q 036236 159 KIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWERV-----------------DLTKVGVPLPGPQ- 220 (557)
Q Consensus 159 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----------------~~~~l~~~l~~~~- 220 (557)
..+. ....... .+......++.+|+||+++... .+..+...+....
T Consensus 84 --------~~~~-----~~~~~~~---~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 147 (268)
T 2r62_A 84 --------FVGL-----GASRVRD---LFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGS 147 (268)
T ss_dssp --------CSSS-----CSSSSST---THHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSC
T ss_pred --------hcch-----HHHHHHH---HHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCccc
Confidence 0000 0011111 1122223467899999995321 1222322222211
Q ss_pred -CCCcEEEEeeCChHHHh--cc---cCCCceecCCCCHHHHHHHHHHHhCC
Q 036236 221 -NTTSKVVFTTRSIDVCG--SM---ESHRKFPVACLSEEDAWELFREKVGQ 265 (557)
Q Consensus 221 -~~~s~iliTtR~~~v~~--~~---~~~~~~~l~~L~~~ea~~L~~~~~~~ 265 (557)
.....||.||....... .. .-...+.+++.+.++-.+++...+..
T Consensus 148 ~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~ 198 (268)
T 2r62_A 148 ENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKG 198 (268)
T ss_dssp SCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSS
T ss_pred CCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhc
Confidence 12145666766543211 11 12346788888999988888877654
No 191
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.02 E-value=0.00015 Score=73.04 Aligned_cols=172 Identities=18% Similarity=0.286 Sum_probs=97.9
Q ss_pred CcccchhHHHHHHHHHHhc------------cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCH
Q 036236 90 PTIVGLQSQLEQVWRCLVV------------EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRL 157 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~------------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 157 (557)
..+.|-++.+++|.+.+.- -...+-|.++|++|+|||.||+++++.. ...| +.+..+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~---~~~~---~~v~~s~l~s- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI---GANF---IFSPASGIVD- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCEE---EEEEGGGTCC-
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEehhhhcc-
Confidence 3467899888888776641 1356789999999999999999999987 2222 2333322110
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH-HhcCCcEEEEEccCCCcc--------c--------cccccccCCCC-
Q 036236 158 EKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFR-SLREKRFVLLLDDIWERV--------D--------LTKVGVPLPGP- 219 (557)
Q Consensus 158 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~--------~--------~~~l~~~l~~~- 219 (557)
.+... .+.....+.. .-...+++|++|+++... . +..++..+.+.
T Consensus 254 ----------------k~~Ge-se~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 316 (437)
T 4b4t_L 254 ----------------KYIGE-SARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD 316 (437)
T ss_dssp ----------------SSSSH-HHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS
T ss_pred ----------------ccchH-HHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc
Confidence 00111 1222222222 234578999999996321 0 11122222111
Q ss_pred CCCCcEEEEeeCChHHHhc--c---cCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCc
Q 036236 220 QNTTSKVVFTTRSIDVCGS--M---ESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLP 289 (557)
Q Consensus 220 ~~~~s~iliTtR~~~v~~~--~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 289 (557)
..++..||.||..+..... . .-+..+.++..+.++-.++|..++.........++ ..|++.+.|.-
T Consensus 317 ~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl----~~lA~~t~G~s 387 (437)
T 4b4t_L 317 NLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDF----EAAVKMSDGFN 387 (437)
T ss_dssp CTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCH----HHHHHTCCSCC
T ss_pred CCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCH----HHHHHhCCCCC
Confidence 1222567777776543211 1 12446788888888888888877654432333333 45667777753
No 192
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.02 E-value=7.7e-05 Score=81.96 Aligned_cols=150 Identities=13% Similarity=0.112 Sum_probs=82.9
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCC---cce-EEEEEeCCccCHHHHHHHHH
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPIN---FDC-VIWVVVSKDLRLEKIQEDIG 165 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~---f~~-~~wv~~~~~~~~~~~~~~i~ 165 (557)
..++||+.+++++...|. .....-+.++|++|+|||++|+.+++........ .+. .+.++.
T Consensus 180 d~iiG~~~~i~~l~~~l~-~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~-------------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLS-RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM-------------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHH-CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------------
T ss_pred CCccCchHHHHHHHHHHh-CCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc--------------
Confidence 468999999999999998 4455568899999999999999999886221111 111 111111
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCccccccccccCCCCCCCCcEEEEeeCChHHHh-------c
Q 036236 166 KKIGLFDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWERVDLTKVGVPLPGPQNTTSKVVFTTRSIDVCG-------S 238 (557)
Q Consensus 166 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~s~iliTtR~~~v~~-------~ 238 (557)
+.......... ....+......++.+|++|.- ......+...+. .+..++|.||....... .
T Consensus 245 ---g~~~~G~~e~~---l~~~~~~~~~~~~~iLfiD~~--~~~~~~L~~~l~---~~~v~~I~at~~~~~~~~~~~d~al 313 (758)
T 3pxi_A 245 ---GTKYRGEFEDR---LKKVMDEIRQAGNIILFIDAA--IDASNILKPSLA---RGELQCIGATTLDEYRKYIEKDAAL 313 (758)
T ss_dssp -----------CTT---HHHHHHHHHTCCCCEEEECC----------CCCTT---SSSCEEEEECCTTTTHHHHTTCSHH
T ss_pred ---cccccchHHHH---HHHHHHHHHhcCCEEEEEcCc--hhHHHHHHHHHh---cCCEEEEeCCChHHHHHHhhccHHH
Confidence 00000000111 122222233467889999921 111222323332 23366776665444100 0
Q ss_pred ccCCCceecCCCCHHHHHHHHHHHhCC
Q 036236 239 MESHRKFPVACLSEEDAWELFREKVGQ 265 (557)
Q Consensus 239 ~~~~~~~~l~~L~~~ea~~L~~~~~~~ 265 (557)
......+.+++.+.++..+++......
T Consensus 314 ~rRf~~i~v~~p~~~~~~~il~~~~~~ 340 (758)
T 3pxi_A 314 ERRFQPIQVDQPSVDESIQILQGLRDR 340 (758)
T ss_dssp HHSEEEEECCCCCHHHHHHHHHHTTTT
T ss_pred HhhCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 012246899999999999999876543
No 193
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.02 E-value=3.8e-05 Score=74.61 Aligned_cols=47 Identities=26% Similarity=0.235 Sum_probs=39.1
Q ss_pred CcccchhHHHHHHHHHHhc-------------cCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 90 PTIVGLQSQLEQVWRCLVV-------------EESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~-------------~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..++|++..++.+...+.. ......+.|+|++|+|||++|+.+++..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999887762 1235678899999999999999999886
No 194
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.01 E-value=1.7e-06 Score=86.47 Aligned_cols=101 Identities=16% Similarity=0.149 Sum_probs=52.7
Q ss_pred cceEEEcccccccccc-----CC--CCCCCccEEEccccccccc-----ccchHhhcCCCCcEEEeecCCCCcc-----C
Q 036236 452 NVRRLSLMQNQIETLS-----EV--PTCPHLLTLFLDFNQELEM-----IADGFFQFMPSLKVLKISNCGNIFQ-----L 514 (557)
Q Consensus 452 ~l~~l~l~~~~~~~~~-----~~--~~~~~L~~L~l~~~~~~~~-----~p~~~~~~l~~L~~L~Ls~~~~~~~-----l 514 (557)
+++.|++++|.+.... .. ..+++|+.|+|++|. +.. ++.. +..+++|++|+|++| .++. |
T Consensus 127 ~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~-L~~~~~L~~L~Ls~N-~l~~~g~~~L 203 (372)
T 3un9_A 127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEG-LAGNTSVTHLSLLHT-GLGDEGLELL 203 (372)
T ss_dssp TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHH-HHTCSSCCEEECTTS-SCHHHHHHHH
T ss_pred hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHH-HhcCCCcCEEeCCCC-CCCcHHHHHH
Confidence 4566666666553211 11 234566666666665 322 2221 345566666666666 4542 3
Q ss_pred CccccCCCCCCeeeccCCCCcc-----cChHHHhHhhhhhcCCCCC
Q 036236 515 PVGMSKLGSLELLDISHTFIKE-----LPEELKKLLEAIQRAPRPD 555 (557)
Q Consensus 515 P~~i~~L~~L~~L~l~~n~l~~-----lP~~i~~L~~L~~L~~~~~ 555 (557)
+..+..+++|++|+|++|.|+. ++..+...++|++|+++++
T Consensus 204 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 204 AAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp HHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred HHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence 4455555666666666666652 3344445556666666554
No 195
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.01 E-value=1.5e-06 Score=89.80 Aligned_cols=104 Identities=19% Similarity=0.155 Sum_probs=62.3
Q ss_pred ccceEEEcccccccc-----ccC-CCCCCCccEEEcccccccccc-----cchHhhcCCCCcEEEeecCCCCcc-----C
Q 036236 451 ENVRRLSLMQNQIET-----LSE-VPTCPHLLTLFLDFNQELEMI-----ADGFFQFMPSLKVLKISNCGNIFQ-----L 514 (557)
Q Consensus 451 ~~l~~l~l~~~~~~~-----~~~-~~~~~~L~~L~l~~~~~~~~~-----p~~~~~~l~~L~~L~Ls~~~~~~~-----l 514 (557)
+++++|++++|.+.. ++. ...+++|+.|++++|. +... ....+..+++|++|+|++| .++. +
T Consensus 199 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l 276 (461)
T 1z7x_W 199 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDL 276 (461)
T ss_dssp CCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHH
T ss_pred CCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHH
Confidence 367777777776654 122 2456777777777775 3322 2222335677777777777 6665 6
Q ss_pred CccccCCCCCCeeeccCCCCccc-ChHHHhH-----hhhhhcCCCCCC
Q 036236 515 PVGMSKLGSLELLDISHTFIKEL-PEELKKL-----LEAIQRAPRPDR 556 (557)
Q Consensus 515 P~~i~~L~~L~~L~l~~n~l~~l-P~~i~~L-----~~L~~L~~~~~~ 556 (557)
|..+.++++|++|+|++|.++.. +..+... ++|++|+++++.
T Consensus 277 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 324 (461)
T 1z7x_W 277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS 324 (461)
T ss_dssp HHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC
Confidence 66677777777777777776532 2234333 467777766653
No 196
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.00 E-value=0.00012 Score=73.70 Aligned_cols=170 Identities=20% Similarity=0.252 Sum_probs=97.8
Q ss_pred cccchhHHHHHHHHHHhc------------cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHH
Q 036236 91 TIVGLQSQLEQVWRCLVV------------EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLE 158 (557)
Q Consensus 91 ~~vGr~~~~~~l~~~L~~------------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 158 (557)
.+.|-++.+++|.+.+.- -...+-|.++|++|+|||.||+++++.. ...| +.+..+.-.+
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~---~~~f---i~vs~s~L~s-- 281 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT---DATF---IRVIGSELVQ-- 281 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH---TCEE---EEEEGGGGCC--
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CCCe---EEEEhHHhhc--
Confidence 578999988888776531 1357889999999999999999999987 2222 2333222110
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH-HhcCCcEEEEEccCCCccc----------------cccccccCCCC-C
Q 036236 159 KIQEDIGKKIGLFDDSWKSKSVEEKAVDIFR-SLREKRFVLLLDDIWERVD----------------LTKVGVPLPGP-Q 220 (557)
Q Consensus 159 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~----------------~~~l~~~l~~~-~ 220 (557)
.+.. ..+.....+.. .-...+++|++|+++.... +..++..+... .
T Consensus 282 ---------------k~vG-esek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 345 (467)
T 4b4t_H 282 ---------------KYVG-EGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP 345 (467)
T ss_dssp ---------------CSSS-HHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC
T ss_pred ---------------ccCC-HHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC
Confidence 0011 11222222222 2345789999999863210 01111112111 1
Q ss_pred CCCcEEEEeeCChHH-----HhcccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCC
Q 036236 221 NTTSKVVFTTRSIDV-----CGSMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGL 288 (557)
Q Consensus 221 ~~~s~iliTtR~~~v-----~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 288 (557)
.++..||.||..+.. .+.-.-+..+.++..+.++-.++|..++.........++ ..|++.|.|.
T Consensus 346 ~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl----~~LA~~T~Gf 414 (467)
T 4b4t_H 346 RGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRW----ELISRLCPNS 414 (467)
T ss_dssp TTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHHCCSC
T ss_pred CCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCH----HHHHHHCCCC
Confidence 222455667765432 221123567888888999989999888765443333333 4567778775
No 197
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.99 E-value=6.9e-05 Score=82.44 Aligned_cols=155 Identities=17% Similarity=0.282 Sum_probs=90.4
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCC---CcceEEEE-EeCCccCHHHHHHHHH
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPI---NFDCVIWV-VVSKDLRLEKIQEDIG 165 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~---~f~~~~wv-~~~~~~~~~~~~~~i~ 165 (557)
..++||+.+++++.+.|. ......+.|+|++|+|||++|+.+++....... ..+..+|. ..+.-
T Consensus 186 d~~iGr~~~i~~l~~~l~-~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l----------- 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLC-RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL----------- 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHT-SSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC-------------
T ss_pred CCccCCHHHHHHHHHHHh-ccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH-----------
Confidence 468999999999999998 445667789999999999999999887621110 12223321 11110
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHhc-CCcEEEEEccCCCcc--------c--cccccccCCCCCCCCcEEEEeeCChH
Q 036236 166 KKIGLFDDSWKSKSVEEKAVDIFRSLR-EKRFVLLLDDIWERV--------D--LTKVGVPLPGPQNTTSKVVFTTRSID 234 (557)
Q Consensus 166 ~~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~--------~--~~~l~~~l~~~~~~~s~iliTtR~~~ 234 (557)
+. ... .....+.....+.+.+. .++.+|++|+++... . ...+...+.. .+...+|.+|....
T Consensus 254 --~~--~~~-~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~at~~~~ 326 (758)
T 1r6b_X 254 --LA--GTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQE 326 (758)
T ss_dssp ---C--CCC-CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEEECHHH
T ss_pred --hc--ccc-ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEEEeCchH
Confidence 00 000 12234444444444444 357899999996431 1 1111222222 23366777776544
Q ss_pred HHhcc-------cCCCceecCCCCHHHHHHHHHHHh
Q 036236 235 VCGSM-------ESHRKFPVACLSEEDAWELFREKV 263 (557)
Q Consensus 235 v~~~~-------~~~~~~~l~~L~~~ea~~L~~~~~ 263 (557)
..... .....+.+++.+.++..+++....
T Consensus 327 ~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 327 FSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred HhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 32111 112358899999999988887654
No 198
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.98 E-value=5.9e-05 Score=77.77 Aligned_cols=179 Identities=17% Similarity=0.173 Sum_probs=100.9
Q ss_pred CcccchhHHHHHHHHHHhc------------cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCH
Q 036236 90 PTIVGLQSQLEQVWRCLVV------------EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRL 157 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~------------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 157 (557)
..++|.+..+++|.+.+.. -...+-|.|+|++|+|||++|+.+++.. ... .+.+.++
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~---~~~---fv~vn~~----- 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAF---FFLINGP----- 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC---SSE---EEEEEHH-----
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh---CCC---EEEEEch-----
Confidence 3589999999999887752 1345679999999999999999998876 222 2333321
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCcc-------------ccccccccCCC-CCCCC
Q 036236 158 EKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWERV-------------DLTKVGVPLPG-PQNTT 223 (557)
Q Consensus 158 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------------~~~~l~~~l~~-~~~~~ 223 (557)
. +...+ ...........+.....+++.+|+||+++... ....+...+.. ....+
T Consensus 273 -~----l~~~~-------~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~ 340 (489)
T 3hu3_A 273 -E----IMSKL-------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (489)
T ss_dssp -H----HHTSC-------TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSC
T ss_pred -H----hhhhh-------cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCc
Confidence 1 11110 11111222233334445678899999984211 01112222211 11222
Q ss_pred cEEEEeeCChHH-----HhcccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCC-chHHHHH
Q 036236 224 SKVVFTTRSIDV-----CGSMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGL-PLALLTI 295 (557)
Q Consensus 224 s~iliTtR~~~v-----~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLai~~~ 295 (557)
..||.||..+.. .+...-...+.+...+.++-.+++..++.........++ ..+++.+.|. +-.+..+
T Consensus 341 v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l----~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL----EQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCH----HHHHHTCTTCCHHHHHHH
T ss_pred eEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhH----HHHHHHccCCcHHHHHHH
Confidence 566667765532 111112335889999999999999988765443333333 4556666664 4444433
No 199
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.97 E-value=0.00018 Score=71.66 Aligned_cols=170 Identities=19% Similarity=0.248 Sum_probs=96.3
Q ss_pred cccchhHHHHHHHHHHhc------------cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHH
Q 036236 91 TIVGLQSQLEQVWRCLVV------------EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLE 158 (557)
Q Consensus 91 ~~vGr~~~~~~l~~~L~~------------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 158 (557)
.+.|.++.+++|.+.+.- -...+-|.++|++|+|||.||+++++.. ...| +.+..+.-.+
T Consensus 183 DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~---~~~f---i~v~~s~l~s-- 254 (437)
T 4b4t_I 183 DIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT---SATF---LRIVGSELIQ-- 254 (437)
T ss_dssp GTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH---TCEE---EEEESGGGCC--
T ss_pred ecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh---CCCE---EEEEHHHhhh--
Confidence 467889888888776541 1346789999999999999999999987 2222 2222221100
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH-hcCCcEEEEEccCCCccc----------------cccccccCCC-CC
Q 036236 159 KIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRS-LREKRFVLLLDDIWERVD----------------LTKVGVPLPG-PQ 220 (557)
Q Consensus 159 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~----------------~~~l~~~l~~-~~ 220 (557)
. -....+.....+... -...+++|++|+++.... +..++..+.. ..
T Consensus 255 ---------------k-~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~ 318 (437)
T 4b4t_I 255 ---------------K-YLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD 318 (437)
T ss_dssp ---------------S-SSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC
T ss_pred ---------------c-cCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCC
Confidence 0 011112223333332 245789999999863210 0111111111 11
Q ss_pred CCCcEEEEeeCChHHHhc-c----cCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCC
Q 036236 221 NTTSKVVFTTRSIDVCGS-M----ESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGL 288 (557)
Q Consensus 221 ~~~s~iliTtR~~~v~~~-~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 288 (557)
.++..||.||..+..... + .-+..+.++.-+.++-.++|..++.......+.++ ..|++.+.|.
T Consensus 319 ~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl----~~LA~~T~Gf 387 (437)
T 4b4t_I 319 RGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNL----ETLVTTKDDL 387 (437)
T ss_dssp SSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCH----HHHHHHCCSC
T ss_pred CCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCC
Confidence 222456667765543221 1 12345788888888888999888765543333343 4566777765
No 200
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.93 E-value=4.5e-06 Score=74.60 Aligned_cols=105 Identities=14% Similarity=0.074 Sum_probs=77.8
Q ss_pred ccccceEEEcccc-cccc-----cc-CCCCCCCccEEEccccccccc-----ccchHhhcCCCCcEEEeecCCCCcc---
Q 036236 449 GWENVRRLSLMQN-QIET-----LS-EVPTCPHLLTLFLDFNQELEM-----IADGFFQFMPSLKVLKISNCGNIFQ--- 513 (557)
Q Consensus 449 ~~~~l~~l~l~~~-~~~~-----~~-~~~~~~~L~~L~l~~~~~~~~-----~p~~~~~~l~~L~~L~Ls~~~~~~~--- 513 (557)
..+.++.|++++| .+.. +. .....++|++|+|++|. ++. +... +...++|++|+|++| .++.
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~-L~~n~~L~~L~L~~N-~i~~~g~ 110 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEM-LKVNNTLKSLNVESN-FISGSGI 110 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHH-HHHCSSCCEEECCSS-CCCHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHH-HHhCCCcCEEECcCC-cCCHHHH
Confidence 3467899999998 7753 11 12567889999999997 433 2222 556688999999999 7764
Q ss_pred --CCccccCCCCCCeeec--cCCCCcc-----cChHHHhHhhhhhcCCCCCC
Q 036236 514 --LPVGMSKLGSLELLDI--SHTFIKE-----LPEELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 514 --lP~~i~~L~~L~~L~l--~~n~l~~-----lP~~i~~L~~L~~L~~~~~~ 556 (557)
|...+...++|++|+| ++|.|.. |...+...++|++|+++.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 6677888889999999 8888874 55666667889999887764
No 201
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.92 E-value=1.4e-06 Score=87.25 Aligned_cols=104 Identities=19% Similarity=0.180 Sum_probs=80.2
Q ss_pred ccceEEEcccccccc--ccCC-CCCCCccEEEcccccccccccchHh-----hcCCCCcEEEeecCCCCcc-----CCcc
Q 036236 451 ENVRRLSLMQNQIET--LSEV-PTCPHLLTLFLDFNQELEMIADGFF-----QFMPSLKVLKISNCGNIFQ-----LPVG 517 (557)
Q Consensus 451 ~~l~~l~l~~~~~~~--~~~~-~~~~~L~~L~l~~~~~~~~~p~~~~-----~~l~~L~~L~Ls~~~~~~~-----lP~~ 517 (557)
.+++.|++++|.+.. +... ..+++|+.|+|++|. ++......+ ...++|++|+|++| .++. ++..
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~ 178 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEG 178 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHHHHHhcCCccceeeCCCC-CCChHHHHHHHHH
Confidence 579999999998854 2222 345689999999997 544332222 34688999999999 7764 6667
Q ss_pred ccCCCCCCeeeccCCCCcc-----cChHHHhHhhhhhcCCCCCC
Q 036236 518 MSKLGSLELLDISHTFIKE-----LPEELKKLLEAIQRAPRPDR 556 (557)
Q Consensus 518 i~~L~~L~~L~l~~n~l~~-----lP~~i~~L~~L~~L~~~~~~ 556 (557)
+..+++|++|+|++|.|+. |+..+...++|+.|++++++
T Consensus 179 L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 179 LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 7889999999999999874 56677788899999998875
No 202
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.91 E-value=3.9e-05 Score=77.22 Aligned_cols=171 Identities=19% Similarity=0.250 Sum_probs=95.7
Q ss_pred CcccchhHHHHHHHHHHhc------------cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCH
Q 036236 90 PTIVGLQSQLEQVWRCLVV------------EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRL 157 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~------------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 157 (557)
..+.|-++.+++|.+.+.. -...+-|.++|++|+|||.||+++++.. ...| +.+..+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~---~~~f---~~v~~s~l~~- 253 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT---NATF---LKLAAPQLVQ- 253 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCEE---EEEEGGGGCS-
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh---CCCE---EEEehhhhhh-
Confidence 3578999999888876531 1356789999999999999999999987 2222 2333222110
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH-HhcCCcEEEEEccCCCc-------cc---------cccccccCCCCC
Q 036236 158 EKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFR-SLREKRFVLLLDDIWER-------VD---------LTKVGVPLPGPQ 220 (557)
Q Consensus 158 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~-------~~---------~~~l~~~l~~~~ 220 (557)
.+.. ..+.....+.. .-...+++|++|+++.. .. +..++..+.+..
T Consensus 254 ----------------~~vG-ese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~ 316 (434)
T 4b4t_M 254 ----------------MYIG-EGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS 316 (434)
T ss_dssp ----------------SCSS-HHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC
T ss_pred ----------------cccc-hHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC
Confidence 0011 11222222322 22346899999998521 00 111222222221
Q ss_pred -CCCcEEEEeeCChHHHhc-c----cCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCC
Q 036236 221 -NTTSKVVFTTRSIDVCGS-M----ESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGL 288 (557)
Q Consensus 221 -~~~s~iliTtR~~~v~~~-~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 288 (557)
..+..||.||..+..... + .-+..+.++..+.++-.++|..++.........+ ...|++.+.|.
T Consensus 317 ~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~ 386 (434)
T 4b4t_M 317 SDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEF 386 (434)
T ss_dssp SSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSC
T ss_pred CCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCC
Confidence 222456667765543211 1 1244678888888888888877654333222233 34667777774
No 203
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.88 E-value=1.3e-05 Score=72.66 Aligned_cols=95 Identities=23% Similarity=0.221 Sum_probs=53.6
Q ss_pred Ccccchh----HHHHHHHHHHhccC---CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHH
Q 036236 90 PTIVGLQ----SQLEQVWRCLVVEE---SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQE 162 (557)
Q Consensus 90 ~~~vGr~----~~~~~l~~~L~~~~---~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 162 (557)
..|++.+ ..++.+.+++...+ ....+.|+|++|+|||+||+.+++... .....++++.+. .+..
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~---~~~~~~~~~~~~------~~~~ 95 (202)
T 2w58_A 25 SDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELA---KRNVSSLIVYVP------ELFR 95 (202)
T ss_dssp TSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHH---TTTCCEEEEEHH------HHHH
T ss_pred hhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEEhH------HHHH
Confidence 3456543 34455555655222 127899999999999999999999872 222345565442 4444
Q ss_pred HHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCC
Q 036236 163 DIGKKIGLFDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWE 205 (557)
Q Consensus 163 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 205 (557)
.+...... ........ .+.+. -+|||||++.
T Consensus 96 ~~~~~~~~-------~~~~~~~~----~~~~~-~~lilDei~~ 126 (202)
T 2w58_A 96 ELKHSLQD-------QTMNEKLD----YIKKV-PVLMLDDLGA 126 (202)
T ss_dssp HHHHC----------CCCHHHHH----HHHHS-SEEEEEEECC
T ss_pred HHHHHhcc-------chHHHHHH----HhcCC-CEEEEcCCCC
Confidence 44432211 11222222 22222 3999999954
No 204
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.87 E-value=0.00032 Score=70.50 Aligned_cols=171 Identities=22% Similarity=0.304 Sum_probs=91.4
Q ss_pred CcccchhHHHHHHHHHHhc------------cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCH
Q 036236 90 PTIVGLQSQLEQVWRCLVV------------EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRL 157 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~------------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 157 (557)
..+.|-++.+++|.+.+.. -...+-|.++|++|+|||+||+++++.. ...| +.+..+.-.+
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~---~~~~---~~v~~~~l~~- 244 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST---KAAF---IRVNGSEFVH- 244 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH---TCEE---EEEEGGGTCC-
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCe---EEEecchhhc-
Confidence 3568899988888876641 1356779999999999999999999987 2222 3333322110
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH-HhcCCcEEEEEccCCCc--------c--c------cccccccCCCC-
Q 036236 158 EKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFR-SLREKRFVLLLDDIWER--------V--D------LTKVGVPLPGP- 219 (557)
Q Consensus 158 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~--------~--~------~~~l~~~l~~~- 219 (557)
.+.. ..+.....+.. .-...++++++|+++.. . + +..++..+.+.
T Consensus 245 ----------------~~~G-e~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~ 307 (428)
T 4b4t_K 245 ----------------KYLG-EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFD 307 (428)
T ss_dssp ----------------SSCS-HHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSC
T ss_pred ----------------cccc-hhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCC
Confidence 0011 11222222222 23457899999998521 0 0 11122122111
Q ss_pred CCCCcEEEEeeCChHH-----HhcccCCCceecCCCCH-HHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCC
Q 036236 220 QNTTSKVVFTTRSIDV-----CGSMESHRKFPVACLSE-EDAWELFREKVGQETLESHHDIVELAQTVARECDGL 288 (557)
Q Consensus 220 ~~~~s~iliTtR~~~v-----~~~~~~~~~~~l~~L~~-~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 288 (557)
...+..||.||..+.. .+...-+..+.++.++. ++-..+|..++.........++ ..|++.+.|.
T Consensus 308 ~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl----~~lA~~t~G~ 378 (428)
T 4b4t_K 308 QSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADL----DSLIIRNDSL 378 (428)
T ss_dssp SSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCH----HHHHHHTTTC
T ss_pred CCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCH----HHHHHHCCCC
Confidence 1222456667765432 22112234577866654 4455566666544332333333 4566777775
No 205
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.87 E-value=1.1e-05 Score=79.29 Aligned_cols=80 Identities=16% Similarity=0.128 Sum_probs=68.7
Q ss_pred CCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCc-cccCCCCCC-eeeccCCCCcccCh-HHHhHhhhh
Q 036236 472 CPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPV-GMSKLGSLE-LLDISHTFIKELPE-ELKKLLEAI 548 (557)
Q Consensus 472 ~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~-~i~~L~~L~-~L~l~~n~l~~lP~-~i~~L~~L~ 548 (557)
|++|+.+++++|+ +..+|...|.++.+|+.|+|++| ++.+|. .|.+|.+|+ .|++.+ .++.++. .|.++++|+
T Consensus 225 ~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 225 MPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLR 300 (329)
T ss_dssp CTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEE
T ss_pred cCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCC
Confidence 7889999999887 88999988999999999999987 777855 789999999 999988 7888864 588999999
Q ss_pred hcCCCCC
Q 036236 549 QRAPRPD 555 (557)
Q Consensus 549 ~L~~~~~ 555 (557)
.++++++
T Consensus 301 ~l~l~~n 307 (329)
T 3sb4_A 301 YVLATGD 307 (329)
T ss_dssp EEEECSS
T ss_pred EEEeCCC
Confidence 8887554
No 206
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.85 E-value=0.00023 Score=72.84 Aligned_cols=173 Identities=15% Similarity=0.162 Sum_probs=96.5
Q ss_pred CcccchhHHHHHHHHHHhc--c---------CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHH
Q 036236 90 PTIVGLQSQLEQVWRCLVV--E---------ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLE 158 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~--~---------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 158 (557)
..++|.++.++++.+.+.. . ...+-|.|+|++|+|||+||+.+++.. ...| +.++.+.....
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~---~~~f---~~is~~~~~~~- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA---NVPF---FHISGSDFVEL- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH---TCCE---EEEEGGGTTTC-
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc---CCCe---eeCCHHHHHHH-
Confidence 4689999887777665431 1 123458899999999999999999886 2222 23333221110
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCcc----------------ccccccccCCC-CCC
Q 036236 159 KIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWERV----------------DLTKVGVPLPG-PQN 221 (557)
Q Consensus 159 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~l~~~l~~-~~~ 221 (557)
............+.......+.+|+||+++... .+..+...+.. ...
T Consensus 89 ----------------~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~ 152 (476)
T 2ce7_A 89 ----------------FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK 152 (476)
T ss_dssp ----------------CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG
T ss_pred ----------------HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC
Confidence 000111122223334445678999999995421 01122211111 011
Q ss_pred CCcEEEEeeCChHHHh--ccc---CCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCc
Q 036236 222 TTSKVVFTTRSIDVCG--SME---SHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLP 289 (557)
Q Consensus 222 ~~s~iliTtR~~~v~~--~~~---~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 289 (557)
.+..||.||..+.... ... -...+.++..+.++-.+++..++.........+ ...+++.+.|..
T Consensus 153 ~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 153 EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh----HHHHHHhcCCCc
Confidence 2256777777654321 111 223678888888888888887765443222222 344777888877
No 207
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.83 E-value=9.3e-05 Score=71.93 Aligned_cols=61 Identities=20% Similarity=0.326 Sum_probs=44.2
Q ss_pred CcccchhHHHHHHHHHHhcc--------CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCC
Q 036236 90 PTIVGLQSQLEQVWRCLVVE--------ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSK 153 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~--------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 153 (557)
..++|.+..++.+...+... .....+.|+|++|+|||++|+.+++... ..-...+.+.++.
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~---~~~~~~~~~~~~~ 85 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF---DTEEAMIRIDMTE 85 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHH---SCGGGEEEEEGGG
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHc---CCCcceEEeeccc
Confidence 35789999999988888731 1235899999999999999999998862 1122345555544
No 208
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.82 E-value=7.7e-06 Score=72.69 Aligned_cols=42 Identities=21% Similarity=0.150 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHhc--cCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 95 LQSQLEQVWRCLVV--EESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 95 r~~~~~~l~~~L~~--~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
....++.+.+++.. .+....+.|+|++|+||||||+.+++..
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 44455555555542 1346789999999999999999998886
No 209
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.82 E-value=6.1e-06 Score=70.30 Aligned_cols=46 Identities=13% Similarity=0.104 Sum_probs=35.2
Q ss_pred cccchhHHHHHHHHHHhc-cCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 91 TIVGLQSQLEQVWRCLVV-EESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 91 ~~vGr~~~~~~l~~~L~~-~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
.++|++..++++.+.+.. .....-|.|+|++|+|||++|+.+++..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 578999999988888763 1334558899999999999999998765
No 210
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.77 E-value=6.5e-05 Score=71.22 Aligned_cols=47 Identities=13% Similarity=0.152 Sum_probs=35.7
Q ss_pred CcccchhHHHHHHHHHHhc-cCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 90 PTIVGLQSQLEQVWRCLVV-EESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~-~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..++|.+..+.++.+.+.. ......|.|+|++|+|||++|+.+++..
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 4589999999888877653 2344678899999999999999999876
No 211
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.71 E-value=0.0016 Score=63.88 Aligned_cols=47 Identities=26% Similarity=0.320 Sum_probs=38.0
Q ss_pred CcccchhHHHHHHHHHHhc----cCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 90 PTIVGLQSQLEQVWRCLVV----EESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~----~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
+.++|.+..++.+...+.. +.....+.|+|++|+||||||+.+++..
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4678998888887776652 2344679999999999999999999986
No 212
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.69 E-value=1.1e-05 Score=69.14 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=23.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
....++|+|+.|+|||||++.++...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999999987
No 213
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.67 E-value=8.9e-05 Score=71.72 Aligned_cols=47 Identities=13% Similarity=0.242 Sum_probs=38.7
Q ss_pred CcccchhHHHHHHHHHHhc-cCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 90 PTIVGLQSQLEQVWRCLVV-EESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~-~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
+.++|++..+.++.+.+.. ......|.|+|.+|+|||++|+.+++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 3589999999999888763 2345678899999999999999999875
No 214
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.59 E-value=0.00025 Score=72.78 Aligned_cols=47 Identities=23% Similarity=0.229 Sum_probs=36.6
Q ss_pred CcccchhHHHHHHHHHHh---cc-CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 90 PTIVGLQSQLEQVWRCLV---VE-ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~---~~-~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..++|.+..++.+..++. .. ...+-+.++|++|+|||++|+.+++..
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 578999998876555443 12 234678999999999999999999886
No 215
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.58 E-value=4.4e-05 Score=83.92 Aligned_cols=47 Identities=21% Similarity=0.367 Sum_probs=38.3
Q ss_pred CcccchhHHHHHHHHHHhcc--------CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 90 PTIVGLQSQLEQVWRCLVVE--------ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~--------~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..++|.+..++.+...+... .....+.++|++|+|||++|+.+++..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 45899999999988887631 122379999999999999999999886
No 216
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.57 E-value=4.9e-05 Score=81.10 Aligned_cols=105 Identities=10% Similarity=0.014 Sum_probs=58.3
Q ss_pred ccccceEEEcccccccc-----ccCC-CCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCC---ccCCcccc
Q 036236 449 GWENVRRLSLMQNQIET-----LSEV-PTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNI---FQLPVGMS 519 (557)
Q Consensus 449 ~~~~l~~l~l~~~~~~~-----~~~~-~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~---~~lP~~i~ 519 (557)
.+++++.|++++|.+.. ++.. ..+++|+.|++++|. +..+|.. +.++++|+.|+++++... ...+..++
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGF-FKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHH-HHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHH-HhhhhHHHhhcccccccccchHHHHHHhh
Confidence 34567777777766642 2211 456777777777776 5556643 666777777777643111 12333444
Q ss_pred CCCCCCeeeccCCCCcccChHHHhHhhhhhcCCCCC
Q 036236 520 KLGSLELLDISHTFIKELPEELKKLLEAIQRAPRPD 555 (557)
Q Consensus 520 ~L~~L~~L~l~~n~l~~lP~~i~~L~~L~~L~~~~~ 555 (557)
.+++|++|+++++....+|..+..+++|++|+++.+
T Consensus 268 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~ 303 (592)
T 3ogk_B 268 FPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYA 303 (592)
T ss_dssp CCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTC
T ss_pred ccccccccCccccchhHHHHHHhhcCCCcEEecCCC
Confidence 455555555555444455555555555555555443
No 217
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.54 E-value=6.1e-05 Score=65.77 Aligned_cols=85 Identities=15% Similarity=0.192 Sum_probs=63.6
Q ss_pred ccceEEEcccccccc--ccCCCCCCCccEEEcccccccccccchHhhcC----CCCcEEEeecCCCCcc--CCccccCCC
Q 036236 451 ENVRRLSLMQNQIET--LSEVPTCPHLLTLFLDFNQELEMIADGFFQFM----PSLKVLKISNCGNIFQ--LPVGMSKLG 522 (557)
Q Consensus 451 ~~l~~l~l~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~l----~~L~~L~Ls~~~~~~~--lP~~i~~L~ 522 (557)
-+++.|+++++.++. +.....|++|+.|+|++|..+..---..+..+ ++|++|+|++|..++. + ..+.+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcCC
Confidence 368999999988753 44557899999999999975543322234443 4799999999966763 3 2567899
Q ss_pred CCCeeeccCC-CCcc
Q 036236 523 SLELLDISHT-FIKE 536 (557)
Q Consensus 523 ~L~~L~l~~n-~l~~ 536 (557)
+|++|+|++| +|+.
T Consensus 140 ~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCCEEEEESCTTCCC
T ss_pred CCCEEECCCCCCCCc
Confidence 9999999998 4765
No 218
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.50 E-value=0.0018 Score=61.59 Aligned_cols=172 Identities=17% Similarity=0.192 Sum_probs=89.7
Q ss_pred CcccchhHHHHHHHHHHhc--c---------CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHH
Q 036236 90 PTIVGLQSQLEQVWRCLVV--E---------ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLE 158 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~--~---------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 158 (557)
..++|.++.++++.+.... . .-.+-+.|+|++|+||||||+.++... .. ..+.+...
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~---~~---~~i~~~~~------ 107 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---RV---PFITASGS------ 107 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT---TC---CEEEEEHH------
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc---CC---CEEEecHH------
Confidence 5689998877776655431 1 112238999999999999999999886 21 22333211
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-cCCcEEEEEccCCCcc----------------ccccccccCCCCCC
Q 036236 159 KIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSL-REKRFVLLLDDIWERV----------------DLTKVGVPLPGPQN 221 (557)
Q Consensus 159 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~----------------~~~~l~~~l~~~~~ 221 (557)
.+ .... ..........+.+.. ...+.++++|+++... .+..+...+.....
T Consensus 108 ~~----~~~~--------~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~ 175 (278)
T 1iy2_A 108 DF----VEMF--------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 175 (278)
T ss_dssp HH----HHST--------TTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT
T ss_pred HH----HHHH--------hhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC
Confidence 11 1100 000111222233332 2456899999984210 01122222222222
Q ss_pred CC-cEEEEeeCChHH-----HhcccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCc
Q 036236 222 TT-SKVVFTTRSIDV-----CGSMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLP 289 (557)
Q Consensus 222 ~~-s~iliTtR~~~v-----~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 289 (557)
.. ..++.||..+.+ .....-...+.++..+.++-.+++...+.......+.. ...++..+.|..
T Consensus 176 ~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~~ 245 (278)
T 1iy2_A 176 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 245 (278)
T ss_dssp TCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccC----HHHHHHHcCCCC
Confidence 21 334446665543 11112345688888898888888887664332222222 234666666654
No 219
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.48 E-value=4.7e-05 Score=71.67 Aligned_cols=83 Identities=22% Similarity=0.267 Sum_probs=60.5
Q ss_pred CCCCccE--EEcccccccccccc---hHhhcCCCCcEEEeecCCCCccC---CccccCCCCCCeeeccCCCCcccChHHH
Q 036236 471 TCPHLLT--LFLDFNQELEMIAD---GFFQFMPSLKVLKISNCGNIFQL---PVGMSKLGSLELLDISHTFIKELPEELK 542 (557)
Q Consensus 471 ~~~~L~~--L~l~~~~~~~~~p~---~~~~~l~~L~~L~Ls~~~~~~~l---P~~i~~L~~L~~L~l~~n~l~~lP~~i~ 542 (557)
..+.|.. ++++.|. ...++. ....++++|+.|+|++| .+..+ |..++.+++|++|+|++|+|+.+ .++.
T Consensus 139 ~dp~L~~~~l~l~~N~-~~~~~~~l~i~~~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~ 215 (267)
T 3rw6_A 139 SDPDLVAQNIDVVLNR-RSCMAATLRIIEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELD 215 (267)
T ss_dssp GCHHHHHTTCCCCTTS-HHHHHHHHHHHHHHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGG
T ss_pred CCcchhhcCccccCCH-HHHHHHHHHHHHhhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhh
Confidence 3444554 5566664 333332 12357899999999999 78765 46778999999999999999988 4567
Q ss_pred hHh--hhhhcCCCCCC
Q 036236 543 KLL--EAIQRAPRPDR 556 (557)
Q Consensus 543 ~L~--~L~~L~~~~~~ 556 (557)
.++ +|+.|+++++.
T Consensus 216 ~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 216 KIKGLKLEELWLDGNS 231 (267)
T ss_dssp GGTTSCCSEEECTTST
T ss_pred hcccCCcceEEccCCc
Confidence 676 88888887764
No 220
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.47 E-value=0.00061 Score=71.43 Aligned_cols=46 Identities=33% Similarity=0.395 Sum_probs=36.2
Q ss_pred cccchhHHHHHHHHHHhc-----cCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 91 TIVGLQSQLEQVWRCLVV-----EESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 91 ~~vGr~~~~~~l~~~L~~-----~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
.++|.+...+.+.+.+.. .....++.|+|++|+||||||+.++...
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 468888877777655431 2356789999999999999999999886
No 221
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.47 E-value=0.00048 Score=74.66 Aligned_cols=172 Identities=17% Similarity=0.182 Sum_probs=96.2
Q ss_pred cccchhHHHHHHHHHHhc---c---------CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHH
Q 036236 91 TIVGLQSQLEQVWRCLVV---E---------ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLE 158 (557)
Q Consensus 91 ~~vGr~~~~~~l~~~L~~---~---------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 158 (557)
.+.|.++.+++|.+.+.- . ...+-|.++|++|+|||+||+.+++.. ..+ .+.++.+.
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el---g~~---~~~v~~~~----- 273 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAF---FFLINGPE----- 273 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT---TCE---EEEEEHHH-----
T ss_pred hhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCe---EEEEEhHH-----
Confidence 467888888777776531 1 246789999999999999999999986 222 23333211
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEccCCCcc--------c-----cccccccCCCC-CCCCc
Q 036236 159 KIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSLREKRFVLLLDDIWERV--------D-----LTKVGVPLPGP-QNTTS 224 (557)
Q Consensus 159 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------~-----~~~l~~~l~~~-~~~~s 224 (557)
+.. . ........+...+.......+.+|+||+++... + ...+...+... ..++.
T Consensus 274 -----l~s---k----~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V 341 (806)
T 3cf2_A 274 -----IMS---K----LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (806)
T ss_dssp -----HHS---S----CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCE
T ss_pred -----hhc---c----cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCE
Confidence 110 0 011111222222333345678999999986321 0 11111111111 11214
Q ss_pred EEEEeeCChHHH-hcc----cCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCc
Q 036236 225 KVVFTTRSIDVC-GSM----ESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLP 289 (557)
Q Consensus 225 ~iliTtR~~~v~-~~~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 289 (557)
.||.||...... ..+ .-...++++..+.++-.++|..+........+.+ ...|++++.|.-
T Consensus 342 ~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHV 407 (806)
T ss_dssp EEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCC
T ss_pred EEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCC
Confidence 455566654321 111 1245688898899998899988775544333333 345777787764
No 222
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.44 E-value=2.5e-05 Score=83.39 Aligned_cols=36 Identities=19% Similarity=0.104 Sum_probs=18.5
Q ss_pred hhcCCCCcEEEeecCCCCccCCccccCCCCCCeeecc
Q 036236 494 FQFMPSLKVLKISNCGNIFQLPVGMSKLGSLELLDIS 530 (557)
Q Consensus 494 ~~~l~~L~~L~Ls~~~~~~~lP~~i~~L~~L~~L~l~ 530 (557)
+.++++|++|+|++| .+..+|..++++++|++|+++
T Consensus 216 ~~~~~~L~~L~L~~~-~~~~l~~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 216 ARNCRSLVSVKVGDF-EILELVGFFKAAANLEEFCGG 251 (592)
T ss_dssp HHHCTTCCEEECSSC-BGGGGHHHHHHCTTCCEEEEC
T ss_pred HhhCCCCcEEeccCc-cHHHHHHHHhhhhHHHhhccc
Confidence 344555555555555 444455555555555555554
No 223
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.40 E-value=0.0014 Score=67.34 Aligned_cols=169 Identities=17% Similarity=0.178 Sum_probs=92.3
Q ss_pred CcccchhHHHHHHHHHHhc--c---------CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHH
Q 036236 90 PTIVGLQSQLEQVWRCLVV--E---------ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLE 158 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~--~---------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 158 (557)
..++|.++.+.++.+.... + .-.+-|.|+|++|+|||+||+.++... .. ..+.++.+.-..
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~---~~---~~i~i~g~~~~~-- 102 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---RV---PFITASGSDFVE-- 102 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT---TC---CEEEEEGGGGTS--
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CC---CEEEEehhHHHH--
Confidence 5689999887777665431 1 112348999999999999999999886 21 223333322110
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcC----CcEEEEEccCCCccc----------------cccccccCCC
Q 036236 159 KIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSLRE----KRFVLLLDDIWERVD----------------LTKVGVPLPG 218 (557)
Q Consensus 159 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~----k~~LlVlDdv~~~~~----------------~~~l~~~l~~ 218 (557)
.........+...++. .+.++++|+++.... +..+...+..
T Consensus 103 -------------------~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg 163 (499)
T 2dhr_A 103 -------------------MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG 163 (499)
T ss_dssp -------------------SCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGG
T ss_pred -------------------hhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcc
Confidence 0011112223333322 457999999953210 1122222222
Q ss_pred CC-CCCcEEEEeeCChHHHhc--c---cCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCc
Q 036236 219 PQ-NTTSKVVFTTRSIDVCGS--M---ESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLP 289 (557)
Q Consensus 219 ~~-~~~s~iliTtR~~~v~~~--~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 289 (557)
.. .....++.||..+..... . .-...+.++..+.++-.+++..++.......+.+ ...|+..+.|+.
T Consensus 164 ~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 164 FEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp CCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSST----THHHHTTSCSCC
T ss_pred cccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHH----HHHHHHhcCCCC
Confidence 21 121455566666654221 1 1234678888898888888887664332222222 345677777765
No 224
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.39 E-value=0.0015 Score=62.76 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=23.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..+.+.++|++|+|||+||+.+++..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45688999999999999999999987
No 225
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.36 E-value=0.0023 Score=59.99 Aligned_cols=172 Identities=17% Similarity=0.196 Sum_probs=88.8
Q ss_pred CcccchhHHHHHHHHHHhc--c---------CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHH
Q 036236 90 PTIVGLQSQLEQVWRCLVV--E---------ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLE 158 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~--~---------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 158 (557)
..++|.+..+.++.+.... . .-.+-+.|+|++|+||||||+.++... .. ..+.+...
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~---~~---~~i~~~~~------ 83 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---RV---PFITASGS------ 83 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT---TC---CEEEEEHH------
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh---CC---CEEEeeHH------
Confidence 4688988776666554331 1 112338999999999999999999886 21 22333211
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc-CCcEEEEEccCCCcc------------c----cccccccCCCCCC
Q 036236 159 KIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSLR-EKRFVLLLDDIWERV------------D----LTKVGVPLPGPQN 221 (557)
Q Consensus 159 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~------------~----~~~l~~~l~~~~~ 221 (557)
.+ .... ..........+.+... ..+.++++|+++... . ...+...+.....
T Consensus 84 ~~----~~~~--------~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~ 151 (254)
T 1ixz_A 84 DF----VEMF--------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 151 (254)
T ss_dssp HH----HHSC--------TTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT
T ss_pred HH----HHHH--------hhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC
Confidence 11 1100 0001122223333332 456899999984210 0 1122222222222
Q ss_pred CC-cEEEEeeCChHHHhc-----ccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCc
Q 036236 222 TT-SKVVFTTRSIDVCGS-----MESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLP 289 (557)
Q Consensus 222 ~~-s~iliTtR~~~v~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 289 (557)
.. ..++.||..+..... ..-...+.++..+.++-.+++...+.......+.+ ...+++.+.|.-
T Consensus 152 ~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~~ 221 (254)
T 1ixz_A 152 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 221 (254)
T ss_dssp TCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccC----HHHHHHHcCCCC
Confidence 21 344456666554211 12234678888888888888877664332222222 234666666643
No 226
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.31 E-value=5.1e-05 Score=80.96 Aligned_cols=105 Identities=20% Similarity=0.246 Sum_probs=66.6
Q ss_pred ccccceEEEcccc-cccc--ccCC-CCCCCccEEEcccccccccccc----hHhhcCCCCcEEEeecCC-CCc--cCCcc
Q 036236 449 GWENVRRLSLMQN-QIET--LSEV-PTCPHLLTLFLDFNQELEMIAD----GFFQFMPSLKVLKISNCG-NIF--QLPVG 517 (557)
Q Consensus 449 ~~~~l~~l~l~~~-~~~~--~~~~-~~~~~L~~L~l~~~~~~~~~p~----~~~~~l~~L~~L~Ls~~~-~~~--~lP~~ 517 (557)
.++++++|++.+| .+.. ++.. ..|++|+.|++++|. +..... .+...+++|++|+|++|. .+. .++.-
T Consensus 128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l 206 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERL 206 (594)
T ss_dssp HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHH
T ss_pred hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHH
Confidence 4567888888776 3332 3333 367888888888776 433221 113356688888888772 111 22223
Q ss_pred ccCCCCCCeeeccCC-CCcccChHHHhHhhhhhcCCCC
Q 036236 518 MSKLGSLELLDISHT-FIKELPEELKKLLEAIQRAPRP 554 (557)
Q Consensus 518 i~~L~~L~~L~l~~n-~l~~lP~~i~~L~~L~~L~~~~ 554 (557)
+.++++|++|+|++| .+..+|..+.++++|++|++..
T Consensus 207 ~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~ 244 (594)
T 2p1m_B 207 VTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGG 244 (594)
T ss_dssp HHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSB
T ss_pred HHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEccccc
Confidence 345688888888887 5667788888888888877543
No 227
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.28 E-value=9.2e-05 Score=73.39 Aligned_cols=105 Identities=19% Similarity=0.265 Sum_probs=71.3
Q ss_pred cccceEEEcccccccc--ccCC--CCCCCccEEEcccc--cc-----cccccchH-hhcCCCCcEEEeecCCCCcc-CCc
Q 036236 450 WENVRRLSLMQNQIET--LSEV--PTCPHLLTLFLDFN--QE-----LEMIADGF-FQFMPSLKVLKISNCGNIFQ-LPV 516 (557)
Q Consensus 450 ~~~l~~l~l~~~~~~~--~~~~--~~~~~L~~L~l~~~--~~-----~~~~p~~~-~~~l~~L~~L~Ls~~~~~~~-lP~ 516 (557)
.++|++|.+..+.+.. +... ..+++|+.|+|+.+ .. +..+...+ ...+++|++|+|++| .+.. .+.
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~-~i~~~~~~ 270 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA-EEQNVVVE 270 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC-TTHHHHHH
T ss_pred CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC-CCchHHHH
Confidence 6789999998877642 1111 36889999998632 10 11121211 135789999999998 6642 222
Q ss_pred cc---cCCCCCCeeeccCCCCcc-----cChHHHhHhhhhhcCCCCC
Q 036236 517 GM---SKLGSLELLDISHTFIKE-----LPEELKKLLEAIQRAPRPD 555 (557)
Q Consensus 517 ~i---~~L~~L~~L~l~~n~l~~-----lP~~i~~L~~L~~L~~~~~ 555 (557)
.+ +.+++|++|+|+.|.|+. ++..+.++++|++|+++.+
T Consensus 271 ~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 271 MFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp HHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred HHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 22 357899999999998875 6777788999999988765
No 228
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.27 E-value=0.0075 Score=57.11 Aligned_cols=151 Identities=15% Similarity=0.157 Sum_probs=81.7
Q ss_pred CcccchhHHHHHHHHHHhc---c---------CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCH
Q 036236 90 PTIVGLQSQLEQVWRCLVV---E---------ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRL 157 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~---~---------~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 157 (557)
..+.|-++.+++|.+.+.. . .-.+-+.|+|++|+||||||+.++... .. ..+.+....-.+.
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~---~~---~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES---GL---NFISVKGPELLNM 83 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT---TC---EEEEEETTTTCSS
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc---CC---CEEEEEcHHHHhh
Confidence 4578888888887765430 0 112339999999999999999999876 11 2344432211100
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-cCCcEEEEEccCCCccc---------c----ccccccCCCCC-CC
Q 036236 158 EKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSL-REKRFVLLLDDIWERVD---------L----TKVGVPLPGPQ-NT 222 (557)
Q Consensus 158 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~---------~----~~l~~~l~~~~-~~ 222 (557)
.....+.....+.+.. ...+.++++|+++.... . ..+...+.... ..
T Consensus 84 ------------------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~ 145 (274)
T 2x8a_A 84 ------------------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQ 145 (274)
T ss_dssp ------------------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTT
T ss_pred ------------------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccC
Confidence 0000111222233322 34678999999963210 0 11111122221 12
Q ss_pred CcEEEEeeCChHHHhc-----ccCCCceecCCCCHHHHHHHHHHHhC
Q 036236 223 TSKVVFTTRSIDVCGS-----MESHRKFPVACLSEEDAWELFREKVG 264 (557)
Q Consensus 223 ~s~iliTtR~~~v~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~ 264 (557)
..-++.+|..+.+... -.-...+.++..+.++-.+++.....
T Consensus 146 ~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 146 QVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp CEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred CEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 1345567766654211 12345678888899988899987764
No 229
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.21 E-value=0.00017 Score=76.79 Aligned_cols=77 Identities=22% Similarity=0.300 Sum_probs=32.9
Q ss_pred cccceEEEcccccccc-----ccCC-CCCCCccEEEcccccccccccc----hHhhcCCCCcEEEeecCCCCccCCcccc
Q 036236 450 WENVRRLSLMQNQIET-----LSEV-PTCPHLLTLFLDFNQELEMIAD----GFFQFMPSLKVLKISNCGNIFQLPVGMS 519 (557)
Q Consensus 450 ~~~l~~l~l~~~~~~~-----~~~~-~~~~~L~~L~l~~~~~~~~~p~----~~~~~l~~L~~L~Ls~~~~~~~lP~~i~ 519 (557)
++++++|++++|.+.. ++.. ..+++|+.|++++|. ..++. .++.++++|++|+|++|..++.+|..+.
T Consensus 155 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~ 232 (594)
T 2p1m_B 155 CRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQ 232 (594)
T ss_dssp CTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHH
T ss_pred CCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHh
Confidence 4455666665555332 1112 245555555555553 11111 1123345555555555533333333333
Q ss_pred CCCCCCeee
Q 036236 520 KLGSLELLD 528 (557)
Q Consensus 520 ~L~~L~~L~ 528 (557)
++++|++|+
T Consensus 233 ~~~~L~~L~ 241 (594)
T 2p1m_B 233 RAPQLEELG 241 (594)
T ss_dssp HCTTCSEEE
T ss_pred cCCcceEcc
Confidence 333333333
No 230
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.16 E-value=0.00026 Score=67.72 Aligned_cols=69 Identities=20% Similarity=0.330 Sum_probs=45.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEe--CCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVV--SKDLRLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIF 188 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 188 (557)
..+++.|+|++|+|||+||.+++... . ..++|++. ... +.. ...+.+.....+.
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~~-G-----~~VlyIs~~~eE~-------------v~~-----~~~~le~~l~~i~ 177 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEAL-G-----GKDKYATVRFGEP-------------LSG-----YNTDFNVFVDDIA 177 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHHH-H-----TTSCCEEEEBSCS-------------STT-----CBCCHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhC-C-----CCEEEEEecchhh-------------hhh-----hhcCHHHHHHHHH
Confidence 44678899999999999999998752 1 12345555 222 111 0134566666677
Q ss_pred HHhcCCcEEEEEccCC
Q 036236 189 RSLREKRFVLLLDDIW 204 (557)
Q Consensus 189 ~~l~~k~~LlVlDdv~ 204 (557)
+.+.+.+ +||+|++.
T Consensus 178 ~~l~~~~-LLVIDsI~ 192 (331)
T 2vhj_A 178 RAMLQHR-VIVIDSLK 192 (331)
T ss_dssp HHHHHCS-EEEEECCT
T ss_pred HHHhhCC-EEEEeccc
Confidence 7776666 99999984
No 231
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.15 E-value=0.00014 Score=64.81 Aligned_cols=83 Identities=18% Similarity=0.190 Sum_probs=65.4
Q ss_pred CCCCCccEEEcccc-ccccc-----ccchHhhcCCCCcEEEeecCCCCcc-----CCccccCCCCCCeeeccCCCCcc--
Q 036236 470 PTCPHLLTLFLDFN-QELEM-----IADGFFQFMPSLKVLKISNCGNIFQ-----LPVGMSKLGSLELLDISHTFIKE-- 536 (557)
Q Consensus 470 ~~~~~L~~L~l~~~-~~~~~-----~p~~~~~~l~~L~~L~Ls~~~~~~~-----lP~~i~~L~~L~~L~l~~n~l~~-- 536 (557)
..++.|+.|+|++| . ++. +... +...++|++|+|++| .++. |...+...++|++|+|++|.|..
T Consensus 33 ~~~~~L~~L~L~~n~~-i~~~g~~~l~~~-L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMN-IPVPTLKACAEA-LKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp TTCTTCCEEECTTCTT-CCHHHHHHHHHH-HTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred hcCCCCCEEEecCCCC-CCHHHHHHHHHH-HHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 56889999999998 5 432 2333 566789999999999 7763 55667777899999999999984
Q ss_pred ---cChHHHhHhhhhhcCC--CCC
Q 036236 537 ---LPEELKKLLEAIQRAP--RPD 555 (557)
Q Consensus 537 ---lP~~i~~L~~L~~L~~--~~~ 555 (557)
|...+...++|++|++ +.+
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N 133 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQ 133 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSS
T ss_pred HHHHHHHHHhCCCceEEEecCCCC
Confidence 6677777889999999 544
No 232
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.13 E-value=0.0012 Score=64.72 Aligned_cols=86 Identities=17% Similarity=0.155 Sum_probs=58.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCCC---CCCCHHHHHHHH
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDSW---KSKSVEEKAVDI 187 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 187 (557)
...++.|+|++|+||||||.+++..... .-..++|++.....+.. .++.++...... ...+.++....+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~---~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~ 131 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQK---MGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIV 131 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHH
Confidence 5679999999999999999999887621 22357888777666543 455566543321 234556666555
Q ss_pred HHHhc-CCcEEEEEccCC
Q 036236 188 FRSLR-EKRFVLLLDDIW 204 (557)
Q Consensus 188 ~~~l~-~k~~LlVlDdv~ 204 (557)
...++ .+.-++|+|.+.
T Consensus 132 ~~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 132 DELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp HHHHHTSCCSEEEEECTT
T ss_pred HHHhhhcCCCeEEehHhh
Confidence 55544 456699999983
No 233
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.11 E-value=0.0015 Score=71.89 Aligned_cols=154 Identities=15% Similarity=0.160 Sum_probs=85.2
Q ss_pred CcccchhHHHHHHHHHHhc------------cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCH
Q 036236 90 PTIVGLQSQLEQVWRCLVV------------EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRL 157 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~------------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 157 (557)
..++|.+..+++|.+++.. -.....|.|+|++|+||||||+.++... ...| +.+....
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l---~~~~---i~v~~~~---- 273 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFF---FLINGPE---- 273 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT---TCEE---EEEEHHH----
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCcE---EEEEchH----
Confidence 3578999999888887752 1345679999999999999999998876 2222 3332211
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHH-HHHHHHHHhcCCcEEEEEccCCCccc-------------cccccccCCCC-CCC
Q 036236 158 EKIQEDIGKKIGLFDDSWKSKSVEE-KAVDIFRSLREKRFVLLLDDIWERVD-------------LTKVGVPLPGP-QNT 222 (557)
Q Consensus 158 ~~~~~~i~~~l~~~~~~~~~~~~~~-~~~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~l~~~l~~~-~~~ 222 (557)
+. +. ....... ....+.......+.++++|+++.... ...+...+... ...
T Consensus 274 ------l~---~~-----~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~ 339 (806)
T 1ypw_A 274 ------IM---SK-----LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA 339 (806)
T ss_dssp ------HS---SS-----STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTS
T ss_pred ------hh---hh-----hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccc
Confidence 10 00 0011122 22223333345678999999843210 01111111111 112
Q ss_pred CcEEEEeeCChHHHh-cc----cCCCceecCCCCHHHHHHHHHHHhCCCc
Q 036236 223 TSKVVFTTRSIDVCG-SM----ESHRKFPVACLSEEDAWELFREKVGQET 267 (557)
Q Consensus 223 ~s~iliTtR~~~v~~-~~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~ 267 (557)
...+|.||..+.... .+ .-...+.+...+.++-.+++...+....
T Consensus 340 ~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~ 389 (806)
T 1ypw_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK 389 (806)
T ss_dssp CCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSC
T ss_pred cEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCC
Confidence 245566665543211 11 1124567888889999999887765433
No 234
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.09 E-value=0.0013 Score=59.90 Aligned_cols=88 Identities=17% Similarity=0.182 Sum_probs=52.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCC---------C-CCCCC
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDD---------S-WKSKS 179 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~-~~~~~ 179 (557)
....++.|+|++|+|||||+..++. . .-..++|++.....+...+.. +....+.... . .....
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~-~-----~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL-L-----SGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKE 90 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH-H-----HCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH-H-----cCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHH
Confidence 3567999999999999999999987 2 124678887766445544433 3333332100 0 01111
Q ss_pred HHHHHHHHHHHhcCCcEEEEEccCC
Q 036236 180 VEEKAVDIFRSLREKRFVLLLDDIW 204 (557)
Q Consensus 180 ~~~~~~~l~~~l~~k~~LlVlDdv~ 204 (557)
..+....+...+..+.-+||+|.+.
T Consensus 91 ~~~~~~~~~~l~~~~~~lliiD~~~ 115 (220)
T 2cvh_A 91 QRRVIGSLKKTVDSNFALVVVDSIT 115 (220)
T ss_dssp HHHHHHHHHHHCCTTEEEEEEECCC
T ss_pred HHHHHHHHHHHhhcCCCEEEEcCcH
Confidence 1233444444444457799999873
No 235
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.08 E-value=0.00015 Score=63.27 Aligned_cols=84 Identities=10% Similarity=0.016 Sum_probs=61.5
Q ss_pred CCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccC-CccccCC----CCCCeeeccCC-CCcc--cChHHH
Q 036236 471 TCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQL-PVGMSKL----GSLELLDISHT-FIKE--LPEELK 542 (557)
Q Consensus 471 ~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~l-P~~i~~L----~~L~~L~l~~n-~l~~--lP~~i~ 542 (557)
.-.+|+.|++++|. +...--..+..+++|+.|+|++|..++.- =..|+.+ ++|++|+|++| +|+. + ..+.
T Consensus 59 ~~~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~ 136 (176)
T 3e4g_A 59 DKYKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALH 136 (176)
T ss_dssp TCCCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGG
T ss_pred CCceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHh
Confidence 34579999999997 55443334678999999999999666531 1234554 47999999998 4874 3 3467
Q ss_pred hHhhhhhcCCCCCC
Q 036236 543 KLLEAIQRAPRPDR 556 (557)
Q Consensus 543 ~L~~L~~L~~~~~~ 556 (557)
++++|++|+++++.
T Consensus 137 ~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 137 HFRNLKYLFLSDLP 150 (176)
T ss_dssp GCTTCCEEEEESCT
T ss_pred cCCCCCEEECCCCC
Confidence 78899999988764
No 236
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.01 E-value=0.002 Score=59.81 Aligned_cols=91 Identities=14% Similarity=0.221 Sum_probs=54.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCCC----CcceEEEEEeCCccCHHHHHHHHHHHhCCCCC----C---CCCCC
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENPI----NFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDD----S---WKSKS 179 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~---~~~~~ 179 (557)
...++.|+|++|+|||||+..++..... .. .-..++|+.....+....+ ..++..++.... . ....+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~-~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~ 100 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQL-PIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAFN 100 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTS-CGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhC-chhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecCC
Confidence 5679999999999999999999886311 11 1357888887765444443 334455554320 0 01122
Q ss_pred HHH---HHHHHHHHhc-CCcEEEEEccC
Q 036236 180 VEE---KAVDIFRSLR-EKRFVLLLDDI 203 (557)
Q Consensus 180 ~~~---~~~~l~~~l~-~k~~LlVlDdv 203 (557)
..+ ....+.+.+. .+.-+||+|++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~lliiD~~ 128 (243)
T 1n0w_A 101 TDHQTQLLYQASAMMVESRYALLIVDSA 128 (243)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEeCc
Confidence 222 2233444443 36778899987
No 237
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.99 E-value=0.00076 Score=74.08 Aligned_cols=47 Identities=21% Similarity=0.375 Sum_probs=38.1
Q ss_pred CcccchhHHHHHHHHHHhcc--------CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 90 PTIVGLQSQLEQVWRCLVVE--------ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~--------~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..++|.+..++.+...+... .....+.++|++|+|||++|+.+++..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 45889999998888877621 123479999999999999999999886
No 238
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.98 E-value=0.001 Score=65.90 Aligned_cols=107 Identities=12% Similarity=0.028 Sum_probs=71.0
Q ss_pred cccccceEEEccccccccccCCCCCCCccEEEcccccccccccchHhh--cCCCCcEEEeecCC-C------CccCCccc
Q 036236 448 KGWENVRRLSLMQNQIETLSEVPTCPHLLTLFLDFNQELEMIADGFFQ--FMPSLKVLKISNCG-N------IFQLPVGM 518 (557)
Q Consensus 448 ~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~--~l~~L~~L~Ls~~~-~------~~~lP~~i 518 (557)
..+++|+.|.+.+|.-..++. ..+++|+.|.+..|. +..-....+. .+++|+.|+|+.+. . +..+...+
T Consensus 169 ~~~P~L~~L~L~g~~~l~l~~-~~~~~L~~L~L~~~~-l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l 246 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLSIGK-KPRPNLKSLEIISGG-LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF 246 (362)
T ss_dssp HTCTTCCEEEEECCBTCBCCS-CBCTTCSEEEEECSB-CCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred hcCCCCcEEEEeCCCCceecc-ccCCCCcEEEEecCC-CChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence 445789999998874233444 348899999999876 3221111133 78999999997421 1 22232223
Q ss_pred --cCCCCCCeeeccCCCCcc-cChHHH---hHhhhhhcCCCCCC
Q 036236 519 --SKLGSLELLDISHTFIKE-LPEELK---KLLEAIQRAPRPDR 556 (557)
Q Consensus 519 --~~L~~L~~L~l~~n~l~~-lP~~i~---~L~~L~~L~~~~~~ 556 (557)
+.+++|++|+|++|.+.. .+..+. .+++|++|+++.+.
T Consensus 247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~ 290 (362)
T 2ra8_A 247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV 290 (362)
T ss_dssp CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC
Confidence 357899999999998874 344444 48899999998654
No 239
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.98 E-value=0.0038 Score=61.29 Aligned_cols=60 Identities=20% Similarity=0.269 Sum_probs=42.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCC---CCcceEEEEEeCCccCHHHHHHHHHHHhCC
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENP---INFDCVIWVVVSKDLRLEKIQEDIGKKIGL 170 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 170 (557)
+...++.|+|++|+|||+||.+++....... ..-..++|++....++...+. .++..++.
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~ 182 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNV 182 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 3668999999999999999999988741110 023478999988876666554 34455554
No 240
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.94 E-value=0.003 Score=61.50 Aligned_cols=92 Identities=17% Similarity=0.277 Sum_probs=57.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCC---CCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCC-------CCCCCH
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENP---INFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDS-------WKSKSV 180 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 180 (557)
...++.|+|++|+|||+||.+++....... ..-..++|++....++...+. +++..++..... ....+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCH
Confidence 567999999999999999999987752110 013478999888876666554 345556543210 011222
Q ss_pred H---HHHHHHHHHhc--CCcEEEEEccC
Q 036236 181 E---EKAVDIFRSLR--EKRFVLLLDDI 203 (557)
Q Consensus 181 ~---~~~~~l~~~l~--~k~~LlVlDdv 203 (557)
+ +....+...++ .+.-+||+|.+
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl 212 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSV 212 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTT
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 2 23344444443 35668888887
No 241
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.93 E-value=0.0023 Score=61.01 Aligned_cols=85 Identities=11% Similarity=0.123 Sum_probs=56.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCCC---CCCCHHHH-HHHHHH
Q 036236 114 IIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDSW---KSKSVEEK-AVDIFR 189 (557)
Q Consensus 114 vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~-~~~l~~ 189 (557)
++.|.|++|+|||||+.+++..... ...-..++|++....++.. .++.++...++. ...+.++. ...+..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~-~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMR-QYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHH-HCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHh-cCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 7899999999999999998877621 1113468999887777653 367777764431 23345554 333222
Q ss_pred H--h-cCCcEEEEEccCC
Q 036236 190 S--L-REKRFVLLLDDIW 204 (557)
Q Consensus 190 ~--l-~~k~~LlVlDdv~ 204 (557)
. + .++.-++|+|-+.
T Consensus 104 l~~i~~~~~~lvVIDSI~ 121 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLG 121 (333)
T ss_dssp HHTCCTTCCEEEEEECST
T ss_pred HHHhhccCceEEEEeccc
Confidence 2 2 3467899999984
No 242
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.92 E-value=0.0016 Score=72.46 Aligned_cols=46 Identities=24% Similarity=0.389 Sum_probs=37.5
Q ss_pred cccchhHHHHHHHHHHhcc--------CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 91 TIVGLQSQLEQVWRCLVVE--------ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 91 ~~vGr~~~~~~l~~~L~~~--------~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
.++|.+..++.+...+... .....+.|+|++|+|||++|+.+++..
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999998888877621 122589999999999999999999886
No 243
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.88 E-value=0.0029 Score=62.43 Aligned_cols=86 Identities=19% Similarity=0.154 Sum_probs=57.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCC---CCCCCHHHHHHHH
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDS---WKSKSVEEKAVDI 187 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 187 (557)
...++.|.|.+|+||||||.+++..... .-..++|++....++.. .+..++...+. ....+.++....+
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~---~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l 144 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQK---AGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIM 144 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHH---CCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHH
Confidence 5678999999999999999998877621 22368999988766543 24555554321 1223556666666
Q ss_pred HHHhcC-CcEEEEEccCC
Q 036236 188 FRSLRE-KRFVLLLDDIW 204 (557)
Q Consensus 188 ~~~l~~-k~~LlVlDdv~ 204 (557)
....+. ..-+||+|.+.
T Consensus 145 ~~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 145 ELLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHHHTTTCCSEEEEECTT
T ss_pred HHHHhcCCCCEEEEeChH
Confidence 555543 45699999983
No 244
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.86 E-value=0.00053 Score=60.73 Aligned_cols=116 Identities=20% Similarity=0.143 Sum_probs=60.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCC---ccCHHHHHHHHHHHhCCC----CCCC--CCCC--
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSK---DLRLEKIQEDIGKKIGLF----DDSW--KSKS-- 179 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~~~l~~~----~~~~--~~~~-- 179 (557)
....|.|++..|.||||.|-...-+.. .+--.+.++..-. ......++.. ++.. ...+ ...+
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~---g~G~rV~~vQF~Kg~~~~gE~~~l~~----L~v~~~~~g~gf~~~~~~~~ 99 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAV---GHGKNVGVVQFIKGTWPNGERNLLEP----HGVEFQVMATGFTWETQNRE 99 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHH---HTTCCEEEEESSCCSSCCHHHHHHGG----GTCEEEECCTTCCCCGGGHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEeeCCCCCccHHHHHHh----CCcEEEEcccccccCCCCcH
Confidence 345677777777999999998877762 2223455554332 2233334333 3210 0011 1111
Q ss_pred -----HHHHHHHHHHHhcCCcE-EEEEccCCC-----ccccccccccCCCCCCCCcEEEEeeCChH
Q 036236 180 -----VEEKAVDIFRSLREKRF-VLLLDDIWE-----RVDLTKVGVPLPGPQNTTSKVVFTTRSID 234 (557)
Q Consensus 180 -----~~~~~~~l~~~l~~k~~-LlVlDdv~~-----~~~~~~l~~~l~~~~~~~s~iliTtR~~~ 234 (557)
........++.+.+.+| |||||++-. ..+.+.+...+...... ..||+|+|+..
T Consensus 100 ~~~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~-~~vIlTGr~ap 164 (196)
T 1g5t_A 100 ADTAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGH-QTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTT-CEEEEECSSCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCC-CEEEEECCCCc
Confidence 11223334455555444 999999832 22233333333333334 78999999853
No 245
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.81 E-value=0.0033 Score=61.71 Aligned_cols=86 Identities=21% Similarity=0.209 Sum_probs=56.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCCC---CCCCHHHHHHHH
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDSW---KSKSVEEKAVDI 187 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 187 (557)
...++.|+|++|+||||||.+++..... .-..++|++.....+.. .++.++...+.. ...+.++....+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~---~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~ 131 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQA---AGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIA 131 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 5679999999999999999999877621 22468899887766543 245566543221 223455555555
Q ss_pred HHHhc-CCcEEEEEccCC
Q 036236 188 FRSLR-EKRFVLLLDDIW 204 (557)
Q Consensus 188 ~~~l~-~k~~LlVlDdv~ 204 (557)
....+ .+.-+||+|.+.
T Consensus 132 ~~l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 132 DMLVRSGALDIIVIDSVA 149 (349)
T ss_dssp HHHHTTTCCSEEEEECGG
T ss_pred HHHHhcCCCCEEEEcChH
Confidence 44443 356799999983
No 246
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.80 E-value=0.00047 Score=62.90 Aligned_cols=113 Identities=16% Similarity=-0.051 Sum_probs=61.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFR 189 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 189 (557)
....++.|+|..|+||||++..+..+.. ..-..++.+...... . ....+++.++...+........+....+.+
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~---~~g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~ 83 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLE---YADVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMS 83 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHH---HTTCCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHS
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHH---hcCCEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHH
Confidence 3567899999999999999999888872 122234444332221 1 122445555543322222233444444444
Q ss_pred HhcCCc-EEEEEccCCCc--cccccccccCCCCCCCCcEEEEeeCC
Q 036236 190 SLREKR-FVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTRS 232 (557)
Q Consensus 190 ~l~~k~-~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~iliTtR~ 232 (557)
.+.+.+ -+||+|.+... ..++.+ ..+.. .+ ..||+|.+.
T Consensus 84 ~~~~~~~dvViIDEaQ~l~~~~ve~l-~~L~~--~g-i~Vil~Gl~ 125 (223)
T 2b8t_A 84 NSFNDETKVIGIDEVQFFDDRICEVA-NILAE--NG-FVVIISGLD 125 (223)
T ss_dssp TTSCTTCCEEEECSGGGSCTHHHHHH-HHHHH--TT-CEEEEECCS
T ss_pred HhhCCCCCEEEEecCccCcHHHHHHH-HHHHh--CC-CeEEEEecc
Confidence 444344 49999998532 222222 22222 23 778888885
No 247
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.74 E-value=0.0071 Score=59.38 Aligned_cols=165 Identities=13% Similarity=-0.051 Sum_probs=97.9
Q ss_pred HHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCCCCCCCH
Q 036236 101 QVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDSWKSKSV 180 (557)
Q Consensus 101 ~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 180 (557)
++.+.+. +.-.++..++|+.|.||++.+..+.+... ...|+....+.+....++.++.
T Consensus 8 ~l~~~l~-~~~~~~yl~~G~e~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~l~------------------- 65 (343)
T 1jr3_D 8 QLRAQLN-EGLRAAYLLLGNDPLLLQESQDAVRQVAA--AQGFEEHHTFSIDPNTDWNAIF------------------- 65 (343)
T ss_dssp THHHHHH-HCCCSEEEEEESCHHHHHHHHHHHHHHHH--HHTCCEEEEEECCTTCCHHHHH-------------------
T ss_pred HHHHHHh-cCCCcEEEEECCcHHHHHHHHHHHHHHHH--hCCCCeeEEEEecCCCCHHHHH-------------------
Confidence 3444454 45668999999999999999999888652 1223221112222223333332
Q ss_pred HHHHHHHHH-HhcCCcEEEEEccCCC-c--cccccccccCCCCCCCCcEEEEeeCC-------hHHHhc-ccCCCceecC
Q 036236 181 EEKAVDIFR-SLREKRFVLLLDDIWE-R--VDLTKVGVPLPGPQNTTSKVVFTTRS-------IDVCGS-MESHRKFPVA 248 (557)
Q Consensus 181 ~~~~~~l~~-~l~~k~~LlVlDdv~~-~--~~~~~l~~~l~~~~~~~s~iliTtR~-------~~v~~~-~~~~~~~~l~ 248 (557)
..+.. -+-+++-++|+|+++. . .....+...+.....+ +.+|+++.. ..+... ......++..
T Consensus 66 ----~~~~~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~-~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~ 140 (343)
T 1jr3_D 66 ----SLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDD-LLLIVRGNKLSKAQENAAWFTALANRSVQVTCQ 140 (343)
T ss_dssp ----HHHHHHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTT-EEEEEEESCCCTTTTTSHHHHHHTTTCEEEEEC
T ss_pred ----HHhcCcCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCC-eEEEEEcCCCChhhHhhHHHHHHHhCceEEEee
Confidence 22221 2345667889999865 2 3344454444433334 666665532 123222 2344678999
Q ss_pred CCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCCchHHHHH
Q 036236 249 CLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGLPLALLTI 295 (557)
Q Consensus 249 ~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 295 (557)
+++.++....+.+.+...+...+ .+.+..+++.++|.+..+...
T Consensus 141 ~l~~~~l~~~l~~~~~~~g~~i~---~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 141 TPEQAQLPRWVAARAKQLNLELD---DAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp CCCTTHHHHHHHHHHHHTTCEEC---HHHHHHHHHSSTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhchHHHHHHHH
Confidence 99999999888887643332222 356788999999988877553
No 248
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.71 E-value=0.0014 Score=63.42 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHhccC--CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 95 LQSQLEQVWRCLVVEE--SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 95 r~~~~~~l~~~L~~~~--~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
+...++.+.+++..-+ ....+.|+|++|+|||+||..+++..
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3344555556665211 25789999999999999999999886
No 249
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.71 E-value=0.0013 Score=66.30 Aligned_cols=103 Identities=13% Similarity=0.102 Sum_probs=62.1
Q ss_pred ccccccceEEEccccccccccCC------------------------CCCCCccEEEcccccccccccchHhhcCCCCcE
Q 036236 447 VKGWENVRRLSLMQNQIETLSEV------------------------PTCPHLLTLFLDFNQELEMIADGFFQFMPSLKV 502 (557)
Q Consensus 447 ~~~~~~l~~l~l~~~~~~~~~~~------------------------~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~ 502 (557)
+..+.+|+.+.+..|.+..++.. .+|++|+.+.+..+ +..++...|.+ .+|+.
T Consensus 176 F~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~ 252 (401)
T 4fdw_A 176 FYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITT 252 (401)
T ss_dssp TTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSE
T ss_pred hhCcccCCeeecCCCcceEechhhEeecccCEEEeCCchheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccE
Confidence 44555666666666555544332 34444555554443 44444444444 45555
Q ss_pred EEeecCCCCccC-CccccCCCCCCeeeccCCCCc-----ccCh-HHHhHhhhhhcCCCC
Q 036236 503 LKISNCGNIFQL-PVGMSKLGSLELLDISHTFIK-----ELPE-ELKKLLEAIQRAPRP 554 (557)
Q Consensus 503 L~Ls~~~~~~~l-P~~i~~L~~L~~L~l~~n~l~-----~lP~-~i~~L~~L~~L~~~~ 554 (557)
+.|.+ .++.+ +..+.++.+|+.+++.+|.+. .++. .+.++++|+.+.+.+
T Consensus 253 i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~ 309 (401)
T 4fdw_A 253 VKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE 309 (401)
T ss_dssp EEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT
T ss_pred EEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC
Confidence 55533 35556 346788899999999887665 5654 478888888887753
No 250
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.67 E-value=0.00078 Score=65.87 Aligned_cols=54 Identities=15% Similarity=0.033 Sum_probs=36.2
Q ss_pred HHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCcc
Q 036236 101 QVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDL 155 (557)
Q Consensus 101 ~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~ 155 (557)
++++.+..-.....++|+|++|+|||||++.+.+........+. ++++-+++..
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~ 216 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERP 216 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCH
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCCh
Confidence 44555553456779999999999999999998876522122333 3456677553
No 251
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.67 E-value=0.0046 Score=60.81 Aligned_cols=85 Identities=19% Similarity=0.171 Sum_probs=55.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCCC---CCCCHHHHHHHH
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDSW---KSKSVEEKAVDI 187 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 187 (557)
...++.|.|.+|+||||||.+++..... .-..++|++....++.. .+..++...+.. ...+.++....+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~---~g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~ 133 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEIC 133 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHH
Confidence 5679999999999999999998877621 22368899887766643 245555543221 122344444444
Q ss_pred HHHhc-CCcEEEEEccC
Q 036236 188 FRSLR-EKRFVLLLDDI 203 (557)
Q Consensus 188 ~~~l~-~k~~LlVlDdv 203 (557)
....+ .+.-+||+|.+
T Consensus 134 ~~l~~~~~~~lVVIDsl 150 (356)
T 1u94_A 134 DALARSGAVDVIVVDSV 150 (356)
T ss_dssp HHHHHHTCCSEEEEECG
T ss_pred HHHHhccCCCEEEEcCH
Confidence 43332 45569999997
No 252
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.57 E-value=0.0053 Score=59.70 Aligned_cols=92 Identities=15% Similarity=0.233 Sum_probs=55.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccC-----------CCCc--ceEEEEEeCCccCHHHHHHHHHHHhCCCCCC---
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLEN-----------PINF--DCVIWVVVSKDLRLEKIQEDIGKKIGLFDDS--- 174 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~-----------~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--- 174 (557)
...++.|+|.+|+|||+||.+++...... .... ..++|++....++...+.. ++..++.....
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 56799999999999999999988763110 1111 5789999888776666553 34556543210
Q ss_pred ----CCCCCHH---HHHHHHHHHhcC--CcEEEEEccC
Q 036236 175 ----WKSKSVE---EKAVDIFRSLRE--KRFVLLLDDI 203 (557)
Q Consensus 175 ----~~~~~~~---~~~~~l~~~l~~--k~~LlVlDdv 203 (557)
....+.+ +....+...++. +.-+||+|.+
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 213 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSL 213 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 0112222 233344444443 4457888876
No 253
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.50 E-value=0.0068 Score=55.61 Aligned_cols=39 Identities=33% Similarity=0.307 Sum_probs=28.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeC
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVS 152 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~ 152 (557)
...+++|.|++|+|||||++.++..... .-..++|+...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~---~~~~v~~~~~~ 60 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLR---DGDPCIYVTTE 60 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHH---HTCCEEEEESS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH---CCCeEEEEEcc
Confidence 4579999999999999999999866521 11246666543
No 254
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.47 E-value=0.0033 Score=56.58 Aligned_cols=43 Identities=19% Similarity=0.445 Sum_probs=34.9
Q ss_pred chhHHHHHHHHHHhc--cCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 94 GLQSQLEQVWRCLVV--EESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 94 Gr~~~~~~l~~~L~~--~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
.|++.+++|.+.+.. .....+|+|.|+.|+||||+++.+....
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 366777888887773 2456899999999999999999998765
No 255
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.44 E-value=0.0065 Score=65.90 Aligned_cols=171 Identities=16% Similarity=0.238 Sum_probs=79.9
Q ss_pred CcccchhHHHHHHHHHHhc------------cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCH
Q 036236 90 PTIVGLQSQLEQVWRCLVV------------EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRL 157 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~------------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 157 (557)
..+.|.++.+++|.+.+.- -...+-|.++|++|.|||.+|+++++.. ... ++.++.
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~---~~~-----f~~v~~---- 544 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QAN-----FISIKG---- 544 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT---TCE-----EEECCH----
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh---CCc-----eEEecc----
Confidence 4567888888888776541 0234568899999999999999999987 222 222221
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-cCCcEEEEEccCCCcc--------c--------cccccccCCCCC
Q 036236 158 EKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRSL-REKRFVLLLDDIWERV--------D--------LTKVGVPLPGPQ 220 (557)
Q Consensus 158 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~--------~--------~~~l~~~l~~~~ 220 (557)
.++ +... ...+ +.....+.+.- +..+++|+||+++... + ..+++..+.+..
T Consensus 545 ~~l----~s~~-------vGes-e~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~ 612 (806)
T 3cf2_A 545 PEL----LTMW-------FGES-EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 612 (806)
T ss_dssp HHH----HTTT-------CSSC-HHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSC
T ss_pred chh----hccc-------cchH-HHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC
Confidence 111 1111 1122 33344444443 4578999999985321 0 112222222222
Q ss_pred C-CCcEEEEeeCChHH-----HhcccCCCceecCCCCHHHHHHHHHHHhCCCccCCCccHHHHHHHHHHHhCCC
Q 036236 221 N-TTSKVVFTTRSIDV-----CGSMESHRKFPVACLSEEDAWELFREKVGQETLESHHDIVELAQTVARECDGL 288 (557)
Q Consensus 221 ~-~~s~iliTtR~~~v-----~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 288 (557)
. .+.-||.||..+.. .+.-.-+..+.++.-+.++-.++|+.++.......+.++ ..|++.+.|.
T Consensus 613 ~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl----~~la~~t~g~ 682 (806)
T 3cf2_A 613 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL----EFLAKMTNGF 682 (806)
T ss_dssp SSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC-----------------
T ss_pred CCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCH----HHHHHhCCCC
Confidence 2 21233335544332 221123456777766666667777776654432222333 3455555553
No 256
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.43 E-value=0.0016 Score=63.68 Aligned_cols=44 Identities=20% Similarity=0.312 Sum_probs=38.1
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..++|++..++.+...+.. ...+.++|++|+|||+||+.+++..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~---~~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICT---GGHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHH---TCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred cceeCcHHHHHHHHHHHHc---CCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4689999999999888872 3478899999999999999999876
No 257
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.40 E-value=0.0026 Score=65.54 Aligned_cols=44 Identities=14% Similarity=0.154 Sum_probs=38.3
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..++|++..++.+...+. ...-|.|+|++|+|||+||+.+++..
T Consensus 22 ~~ivGq~~~i~~l~~al~---~~~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAAL---SGESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHH---HTCEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHh---cCCeeEeecCchHHHHHHHHHHHHHH
Confidence 468999999999888887 33578999999999999999999876
No 258
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=96.33 E-value=0.0098 Score=59.93 Aligned_cols=101 Identities=18% Similarity=0.235 Sum_probs=63.6
Q ss_pred HHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCcc-CHHHHHHHHHHHhCCC------C-
Q 036236 101 QVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDL-RLEKIQEDIGKKIGLF------D- 172 (557)
Q Consensus 101 ~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~------~- 172 (557)
+.++.|..=.+..-++|.|.+|+|||+|+.++.+... +.+.+.++++-+++.. ...++.+++...=.+. .
T Consensus 142 r~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~--~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rt 219 (482)
T 2ck3_D 142 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVA--KAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKV 219 (482)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTT--TTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCE
T ss_pred EEEecccccccCCeeeeecCCCCChHHHHHHHHHhhH--hhCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceE
Confidence 4566665335677899999999999999999988752 2345667788887754 4567777776643322 1
Q ss_pred ----CCCCCCCHH-----HHHHHHHHHh---cCCcEEEEEccC
Q 036236 173 ----DSWKSKSVE-----EKAVDIFRSL---REKRFVLLLDDI 203 (557)
Q Consensus 173 ----~~~~~~~~~-----~~~~~l~~~l---~~k~~LlVlDdv 203 (557)
...+..... ...-.+.+++ +++.+||++||+
T Consensus 220 vvV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~Dsi 262 (482)
T 2ck3_D 220 ALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNI 262 (482)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECT
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 001111111 1122233443 468999999998
No 259
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.31 E-value=0.003 Score=52.33 Aligned_cols=55 Identities=15% Similarity=0.118 Sum_probs=44.9
Q ss_pred cEEEcccccccc--cccchHhhcCCCCcEEEeecCCCCccCCc-cccCCCCCCeeeccCCCCc
Q 036236 476 LTLFLDFNQELE--MIADGFFQFMPSLKVLKISNCGNIFQLPV-GMSKLGSLELLDISHTFIK 535 (557)
Q Consensus 476 ~~L~l~~~~~~~--~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~-~i~~L~~L~~L~l~~n~l~ 535 (557)
..++.+++. +. .+|.. + -.+|++|+|++| .|+.||. .+..+.+|++|+|++|.+.
T Consensus 11 ~~v~Cs~~~-L~~~~vP~~-l--p~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRG-LTWASLPTA-F--PVDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSC-CCTTTSCSC-C--CTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCC-CccccCCCC-C--CcCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCee
Confidence 467788887 77 88865 2 346999999999 9999976 4688999999999999765
No 260
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.29 E-value=0.007 Score=61.12 Aligned_cols=62 Identities=21% Similarity=0.270 Sum_probs=39.5
Q ss_pred HHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCcc-CHHHHHHHHHH
Q 036236 103 WRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDL-RLEKIQEDIGK 166 (557)
Q Consensus 103 ~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~ 166 (557)
++.|..-.+...++|+|.+|+|||||+..+..... ....+.++++.+++.. ...+++.++..
T Consensus 142 ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~--~~~~~i~V~~~iGerttev~el~~~l~~ 204 (473)
T 1sky_E 142 VDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIA--QEHGGISVFAGVGERTREGNDLYHEMKD 204 (473)
T ss_dssp HHHHSCEETTCEEEEECCSSSCHHHHHHHHHHHHH--HHTCCCEEEEEESSCHHHHHHHHHHHHH
T ss_pred HHHHhhhccCCEEEEECCCCCCccHHHHHHHhhhh--hccCcEEEEeeeccCchHHHHHHHHhhh
Confidence 44444222345689999999999999999987752 1123445667776654 34555555543
No 261
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.27 E-value=0.0038 Score=56.50 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhc-cCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 97 SQLEQVWRCLVV-EESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 97 ~~~~~l~~~L~~-~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
+-+++|.+.+.. .+...+|+|+|+.|.|||||++.+....
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345566666553 2467899999999999999999998876
No 262
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.23 E-value=0.024 Score=56.96 Aligned_cols=26 Identities=31% Similarity=0.503 Sum_probs=23.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...+|.++|.+|+||||++..++..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 46899999999999999999998877
No 263
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.21 E-value=0.023 Score=54.88 Aligned_cols=53 Identities=9% Similarity=0.046 Sum_probs=39.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHH
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKK 167 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 167 (557)
....++.|.|.+|+||||||.+++.... ... ..++|++.. .+..++...+...
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a-~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMS-DND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHH-TTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHH-HcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 3667999999999999999999987762 222 567887765 4556666666554
No 264
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.20 E-value=0.018 Score=52.56 Aligned_cols=59 Identities=25% Similarity=0.352 Sum_probs=37.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccC--CC-CcceEEEEEeCCccCHHHHHHHHHHHhCC
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLEN--PI-NFDCVIWVVVSKDLRLEKIQEDIGKKIGL 170 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~--~~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 170 (557)
...+++|+|++|+|||||++.++...... .. ....++|+.......... ...+.+..+.
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~~ 85 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGL 85 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcCC
Confidence 56799999999999999999998754110 01 234578877655433332 3334444443
No 265
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=96.19 E-value=0.014 Score=59.15 Aligned_cols=100 Identities=22% Similarity=0.272 Sum_probs=64.7
Q ss_pred HHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCcc-CHHHHHHHHHHHhCCC-------CC
Q 036236 102 VWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDL-RLEKIQEDIGKKIGLF-------DD 173 (557)
Q Consensus 102 l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~ 173 (557)
.++.|..=.+..-++|.|.+|+|||+|+.++.+... +.+.+.++++-++... ...++.+++...=.+. ..
T Consensus 155 vID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a--~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rt 232 (498)
T 1fx0_B 155 VVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIA--KAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKV 232 (498)
T ss_dssp THHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTT--TTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCE
T ss_pred EeeeecccccCCeEEeecCCCCCchHHHHHHHHHHH--hhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccce
Confidence 455665445677899999999999999999998852 2345778888887765 4567777776542222 00
Q ss_pred -----CCCCC-----CHHHHHHHHHHHhc---CCcEEEEEccC
Q 036236 174 -----SWKSK-----SVEEKAVDIFRSLR---EKRFVLLLDDI 203 (557)
Q Consensus 174 -----~~~~~-----~~~~~~~~l~~~l~---~k~~LlVlDdv 203 (557)
..+.. -.....-.+.++++ ++.+||++||+
T Consensus 233 vvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsi 275 (498)
T 1fx0_B 233 ALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNI 275 (498)
T ss_dssp EEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECS
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 00111 11122333445554 58999999998
No 266
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.16 E-value=0.019 Score=57.32 Aligned_cols=60 Identities=17% Similarity=0.183 Sum_probs=39.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccC---CCCcceEEEEEeCCccCHHHHHHHHHHHhCCC
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLEN---PINFDCVIWVVVSKDLRLEKIQEDIGKKIGLF 171 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~---~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 171 (557)
...++.|+|++|+|||||+..++-..... ...-..++|++....+....+ ..+++.++..
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~ 239 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLD 239 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCC
Confidence 56799999999999999999876433110 012346888887766555443 3466666653
No 267
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.09 E-value=0.0033 Score=55.12 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 112 VGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 112 ~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..+|.|.|++|+||||+|+.+.+..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3579999999999999999999986
No 268
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.06 E-value=0.018 Score=54.99 Aligned_cols=87 Identities=14% Similarity=0.100 Sum_probs=48.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCC-ccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSK-DLRLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFR 189 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 189 (557)
...+++|+|++|+||||++..++.......+ ..+..+.... .....+.+....+..+.+.. ...+.......+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G--~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~--~~~~~~~l~~al~- 178 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH--KKIAFITTDTYRIAAVEQLKTYAELLQAPLE--VCYTKEEFQQAKE- 178 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC--CCEEEEECCCSSTTHHHHHHHHHTTTTCCCC--BCSSHHHHHHHHH-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC--CEEEEEecCcccchHHHHHHHHHHhcCCCeE--ecCCHHHHHHHHH-
Confidence 4679999999999999999999877621111 2345554432 22333344444444444321 1123333333333
Q ss_pred HhcCCcEEEEEccC
Q 036236 190 SLREKRFVLLLDDI 203 (557)
Q Consensus 190 ~l~~k~~LlVlDdv 203 (557)
.+ .+.=++|+|-.
T Consensus 179 ~~-~~~dlvIiDT~ 191 (296)
T 2px0_A 179 LF-SEYDHVFVDTA 191 (296)
T ss_dssp HG-GGSSEEEEECC
T ss_pred Hh-cCCCEEEEeCC
Confidence 33 34457888954
No 269
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.06 E-value=0.0032 Score=61.98 Aligned_cols=46 Identities=22% Similarity=0.351 Sum_probs=35.0
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..++|.+..++.+...+. .+...-|.|+|++|+|||++|+.+++..
T Consensus 24 ~~i~G~~~~~~~l~~~~~-~~~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAV-DPGIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGSCSCHHHHHHHHHHHH-CGGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hhccChHHHHHHHHHHhh-CCCCceEEEECCCCccHHHHHHHHHHhC
Confidence 458999887666544443 2333459999999999999999999876
No 270
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.05 E-value=0.0057 Score=60.65 Aligned_cols=46 Identities=22% Similarity=0.209 Sum_probs=37.6
Q ss_pred cccchhHHHHHHHHHHhc--------------cCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 91 TIVGLQSQLEQVWRCLVV--------------EESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 91 ~~vGr~~~~~~l~~~L~~--------------~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
.++|.+..++.+...+.. ......|.++|++|+|||++|+.+++..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 469999999998887730 0145678999999999999999999886
No 271
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.04 E-value=0.011 Score=59.50 Aligned_cols=102 Identities=10% Similarity=0.151 Sum_probs=74.8
Q ss_pred cccccccceEEEccccccc-----cccC--CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCC-cc
Q 036236 446 AVKGWENVRRLSLMQNQIE-----TLSE--VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLP-VG 517 (557)
Q Consensus 446 ~~~~~~~l~~l~l~~~~~~-----~~~~--~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP-~~ 517 (557)
.+..+.+|+.+.+.+|.+. .++. +..|++|+.+.+..+ +..++...|.++.+|+.+.|.++ ++.++ ..
T Consensus 266 aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~a 341 (401)
T 4fdw_A 266 AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRILGQGLLGGNRKVTQLTIPAN--VTQINFSA 341 (401)
T ss_dssp TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCCSCCEEEECTT--CCEECTTS
T ss_pred HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc--eEEEhhhhhcCCCCccEEEECcc--ccEEcHHh
Confidence 4567788999988877654 3433 378899999999843 78888888999999999999664 77774 47
Q ss_pred ccCCCCCCeeeccCCCCcccChH-HHhHh-hhhhcCC
Q 036236 518 MSKLGSLELLDISHTFIKELPEE-LKKLL-EAIQRAP 552 (557)
Q Consensus 518 i~~L~~L~~L~l~~n~l~~lP~~-i~~L~-~L~~L~~ 552 (557)
+.++ +|+.|++++|.+..++.. +..+. ++..|.+
T Consensus 342 F~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~v 377 (401)
T 4fdw_A 342 FNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRV 377 (401)
T ss_dssp SSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEE
T ss_pred CCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEe
Confidence 8888 999999999887776543 33442 4444443
No 272
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.98 E-value=0.021 Score=56.07 Aligned_cols=94 Identities=22% Similarity=0.296 Sum_probs=53.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccC--CCC-cceEEEEEeCCccCHHHHHHHHHHHhCCCCCC----------CC
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLEN--PIN-FDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDS----------WK 176 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~--~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----------~~ 176 (557)
+...++.|+|++|+|||||+..++...... ... -..++|++....+....+ ..+++..+..... ..
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~ 207 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFN 207 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCC
Confidence 367899999999999999999998775111 111 124588887655433332 3344444332110 00
Q ss_pred CCCHHHHHHHHHHHhc------CCcEEEEEccCC
Q 036236 177 SKSVEEKAVDIFRSLR------EKRFVLLLDDIW 204 (557)
Q Consensus 177 ~~~~~~~~~~l~~~l~------~k~~LlVlDdv~ 204 (557)
.....+....+...+. .+.-+||+|.+-
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~t 241 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 241 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSS
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCch
Confidence 0111223333444443 467789999874
No 273
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.95 E-value=0.0038 Score=54.30 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 113 GIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 113 ~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
.+|+|.|++|+||||+|+.+....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998886
No 274
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.87 E-value=0.0075 Score=60.06 Aligned_cols=47 Identities=21% Similarity=0.217 Sum_probs=37.0
Q ss_pred CcccchhHHHHHHHHHHh----c-------------------------cCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 90 PTIVGLQSQLEQVWRCLV----V-------------------------EESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~----~-------------------------~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..++|.+..++.|...+. . ......+.++|++|+|||++|+.+++..
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 357899988888887762 0 1134578999999999999999999886
No 275
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.87 E-value=0.022 Score=54.61 Aligned_cols=105 Identities=18% Similarity=0.164 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHhc-------cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCcc-CHHHHHHHHHHH
Q 036236 96 QSQLEQVWRCLVV-------EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDL-RLEKIQEDIGKK 167 (557)
Q Consensus 96 ~~~~~~l~~~L~~-------~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~ 167 (557)
+.-.++|.+.+.. .....++.|+|++|+||||++..++..... . -..+.++...... ...+-+...++.
T Consensus 81 ~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~-~--g~kV~lv~~D~~r~~a~eqL~~~~~~ 157 (306)
T 1vma_A 81 ESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVD-E--GKSVVLAAADTFRAAAIEQLKIWGER 157 (306)
T ss_dssp HHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHH-T--TCCEEEEEECTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHh-c--CCEEEEEccccccHHHHHHHHHHHHH
Confidence 3444555555542 124679999999999999999999887732 1 1235555543211 112223445555
Q ss_pred hCCCCCC-CCCCCHHHH-HHHHHHHhcCCcEEEEEccC
Q 036236 168 IGLFDDS-WKSKSVEEK-AVDIFRSLREKRFVLLLDDI 203 (557)
Q Consensus 168 l~~~~~~-~~~~~~~~~-~~~l~~~l~~k~~LlVlDdv 203 (557)
.+++.-. ....+.... ...+...+..+.-++|+|..
T Consensus 158 ~gl~~~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtp 195 (306)
T 1vma_A 158 VGATVISHSEGADPAAVAFDAVAHALARNKDVVIIDTA 195 (306)
T ss_dssp HTCEEECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEEC
T ss_pred cCCcEEecCCccCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 5543211 112233322 23344445555568888976
No 276
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.84 E-value=0.0046 Score=53.92 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 113 GIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 113 ~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
.+|+|.|++|+||||+|+.+ ...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 47899999999999999999 543
No 277
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.84 E-value=0.0047 Score=55.38 Aligned_cols=26 Identities=38% Similarity=0.353 Sum_probs=23.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...+|+|+|++|+||||+++.+....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999999876
No 278
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.83 E-value=0.0049 Score=54.70 Aligned_cols=26 Identities=31% Similarity=0.337 Sum_probs=23.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...+++|+|++|+|||||++.+....
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcc
Confidence 55789999999999999999998763
No 279
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.81 E-value=0.019 Score=53.10 Aligned_cols=40 Identities=23% Similarity=0.188 Sum_probs=30.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCC
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSK 153 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 153 (557)
...++.|.|++|+||||||.+++..... .-..++|++...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~---~~~~v~~~~~e~ 61 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLK---MGEPGIYVALEE 61 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHH---TTCCEEEEESSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEccC
Confidence 5579999999999999999988776521 223577776554
No 280
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.78 E-value=0.018 Score=68.07 Aligned_cols=86 Identities=19% Similarity=0.139 Sum_probs=57.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCCC---CCCCHHHHHHHH
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDSW---KSKSVEEKAVDI 187 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 187 (557)
..+.|.|+|++|+|||+||.++..... ..-..++|+++....+... ++.++.+.+.. ...+.++....+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~---~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Confidence 678999999999999999999988762 2334678888877766554 44555433221 122344555555
Q ss_pred HHHhc-CCcEEEEEccCC
Q 036236 188 FRSLR-EKRFVLLLDDIW 204 (557)
Q Consensus 188 ~~~l~-~k~~LlVlDdv~ 204 (557)
.+..+ .+.-+||+|.+.
T Consensus 1498 ~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCCCEEEEcChh
Confidence 54433 467799999984
No 281
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.76 E-value=0.049 Score=52.73 Aligned_cols=58 Identities=24% Similarity=0.310 Sum_probs=36.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCC-ccCHHHHHHHHHHHhCC
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSK-DLRLEKIQEDIGKKIGL 170 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~ 170 (557)
+...+++|+|+.|+||||+++.++...... . ..+.++...- .....+.+....+.++.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~--~-g~V~l~g~D~~r~~a~eql~~~~~~~gv 185 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH--G-FSVVIAASDTFRAGAIEQLEEHAKRIGV 185 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT--T-CCEEEEEECCSSTTHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc--C-CEEEEEeecccccchHHHHHHHHHHcCc
Confidence 356899999999999999999998876221 1 2344443322 12333444555566653
No 282
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.76 E-value=0.0055 Score=53.93 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=23.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..++++|+|++|+|||||++.+....
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998865
No 283
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.76 E-value=0.01 Score=52.74 Aligned_cols=41 Identities=12% Similarity=0.025 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 96 QSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 96 ~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..-+..+..++..-+....+.|+|++|+||||+|..+++..
T Consensus 42 ~~f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 42 ITFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 34456666666633445579999999999999999998876
No 284
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.71 E-value=0.0059 Score=53.53 Aligned_cols=22 Identities=32% Similarity=0.308 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 036236 113 GIIGLYGMGGVGKTTLLTHINN 134 (557)
Q Consensus 113 ~vv~I~G~~GiGKTtLa~~v~~ 134 (557)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 285
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.68 E-value=0.0058 Score=53.95 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 112 VGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 112 ~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
.+.|.|+|++|+||||+|+.+....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999999886
No 286
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.66 E-value=0.0066 Score=54.45 Aligned_cols=28 Identities=29% Similarity=0.487 Sum_probs=25.1
Q ss_pred cCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 109 EESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 109 ~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
.....+|+|+|++|+||||+++.+....
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3567899999999999999999998886
No 287
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.63 E-value=0.0068 Score=53.82 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=23.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...+|.|.|++|+||||+|+.+....
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998876
No 288
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.62 E-value=0.0055 Score=53.42 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 112 VGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 112 ~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..+|+|+|++|+||||+++.+....
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998876
No 289
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.58 E-value=0.0073 Score=54.58 Aligned_cols=27 Identities=33% Similarity=0.289 Sum_probs=24.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
....+++|+|+.|+|||||++.+....
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 356799999999999999999998876
No 290
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.57 E-value=0.013 Score=55.80 Aligned_cols=27 Identities=26% Similarity=0.237 Sum_probs=24.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
+...+|+|.|..|+||||||+.+...+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999988776
No 291
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.57 E-value=0.0068 Score=53.77 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 113 GIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 113 ~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
.+|.|.|++|+||||+|+.+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999987
No 292
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.55 E-value=0.026 Score=54.81 Aligned_cols=52 Identities=13% Similarity=0.103 Sum_probs=37.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHH
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKK 167 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 167 (557)
...++.|.|.+|+||||||..++..... .-..++|++.. .+..++...++..
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSlE--ms~~ql~~Rlls~ 96 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSLE--MSAEQLALRALSD 96 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeCC--CCHHHHHHHHHHH
Confidence 5679999999999999999999888632 22356676653 4456666666544
No 293
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.53 E-value=0.007 Score=53.63 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 113 GIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 113 ~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
.+|.|.|++|+||||+++.+....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999876
No 294
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.53 E-value=0.066 Score=53.78 Aligned_cols=91 Identities=20% Similarity=0.111 Sum_probs=47.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCC-ccCHHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHHH
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSK-DLRLEKIQEDIGKKIGLFDDSW-KSKSVEEKAVDIF 188 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 188 (557)
...+|.++|++|+||||++..++..... ... .+..++... .....+.+.......+.+.... ...+.........
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~--~G~-kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al 172 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK--RGY-KVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGV 172 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH--TTC-CEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCC-eEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHH
Confidence 4689999999999999999999887732 122 344444332 1122333444445554432111 1223333333333
Q ss_pred HHhc-CCcEEEEEccCC
Q 036236 189 RSLR-EKRFVLLLDDIW 204 (557)
Q Consensus 189 ~~l~-~k~~LlVlDdv~ 204 (557)
..+. ...=++|+|-..
T Consensus 173 ~~a~~~~~DvvIIDTaG 189 (433)
T 3kl4_A 173 DIFVKNKMDIIIVDTAG 189 (433)
T ss_dssp HHTTTTTCSEEEEEECC
T ss_pred HHHHhcCCCEEEEECCC
Confidence 3333 233456677653
No 295
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.52 E-value=0.0056 Score=54.06 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 113 GIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 113 ~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
+.|.|+|++|+|||||++.+....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 568899999999999999998876
No 296
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.50 E-value=0.014 Score=53.23 Aligned_cols=39 Identities=21% Similarity=0.300 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 97 SQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 97 ~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
+..+.+...+. ......|+|+|.+|+|||||+..+....
T Consensus 24 ~~a~~~r~~~~-~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 24 RLADKNRKLLN-KHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHH-HTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 33444555444 4567889999999999999999998875
No 297
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.50 E-value=0.0075 Score=54.07 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=23.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
....+|+|+|+.|+||||+++.+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 456799999999999999999998875
No 298
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.50 E-value=0.025 Score=56.23 Aligned_cols=79 Identities=14% Similarity=0.095 Sum_probs=39.9
Q ss_pred CCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCc-cccCCCCCCeeeccCCCCcccCh-HHHhHhhh
Q 036236 470 PTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPV-GMSKLGSLELLDISHTFIKELPE-ELKKLLEA 547 (557)
Q Consensus 470 ~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~-~i~~L~~L~~L~l~~n~l~~lP~-~i~~L~~L 547 (557)
..|.+|..+.+..+ +..++...|..+.+|+.+.+.++ .++.+++ .+.++.+|+.++|..+ ++.++. .+.++++|
T Consensus 260 ~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 335 (379)
T 4h09_A 260 QNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNS-AIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKAL 335 (379)
T ss_dssp TTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred ceeehhcccccccc--ceecccccccccccccccccccc-ccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCC
Confidence 34555555555433 44455555555555555555554 4555532 4555555555555432 444443 24455555
Q ss_pred hhcCC
Q 036236 548 IQRAP 552 (557)
Q Consensus 548 ~~L~~ 552 (557)
+.+.+
T Consensus 336 ~~i~i 340 (379)
T 4h09_A 336 STISY 340 (379)
T ss_dssp CCCCC
T ss_pred CEEEE
Confidence 54443
No 299
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.48 E-value=0.016 Score=56.35 Aligned_cols=44 Identities=20% Similarity=0.216 Sum_probs=33.2
Q ss_pred cchhHHHHHHHHHHhc---cCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 93 VGLQSQLEQVWRCLVV---EESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 93 vGr~~~~~~l~~~L~~---~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
|+.+.-.+++.+.+.. .+....|.|+|++|+||||+++.++...
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 4555666666666642 3456679999999999999999988775
No 300
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.47 E-value=0.0066 Score=53.35 Aligned_cols=26 Identities=42% Similarity=0.387 Sum_probs=23.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..+.|.|+|++|+||||+++.+.+..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 34678999999999999999998876
No 301
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.46 E-value=0.0068 Score=54.55 Aligned_cols=26 Identities=31% Similarity=0.539 Sum_probs=23.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...+|+|+|++|+||||+++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 56789999999999999999998876
No 302
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.45 E-value=0.0062 Score=54.68 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=22.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 112 VGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 112 ~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..+|+|.|++|+||||+|+.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998876
No 303
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.45 E-value=0.0086 Score=53.77 Aligned_cols=26 Identities=19% Similarity=0.355 Sum_probs=23.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...+++|+|+.|+|||||++.+....
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45689999999999999999998765
No 304
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.43 E-value=0.02 Score=47.18 Aligned_cols=52 Identities=15% Similarity=0.232 Sum_probs=43.0
Q ss_pred EEEccccccc--cccCCCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecC
Q 036236 455 RLSLMQNQIE--TLSEVPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNC 508 (557)
Q Consensus 455 ~l~l~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~ 508 (557)
.++.+++.++ .+|.. -.++|+.|+|++|. +..+|..+|..+++|++|+|++|
T Consensus 12 ~v~Cs~~~L~~~~vP~~-lp~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA-FPVDTTELVLTGNN-LTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSC-CCTTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCC-CCcCCCEEECCCCc-CCccChhhhhhccccCEEEecCC
Confidence 6777777777 67643 22479999999998 99999988999999999999998
No 305
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.42 E-value=0.043 Score=55.03 Aligned_cols=89 Identities=19% Similarity=0.161 Sum_probs=47.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHH--HHHHHHHHHhCCCCCCC-CCCCHHHHHHHH
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLE--KIQEDIGKKIGLFDDSW-KSKSVEEKAVDI 187 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~--~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l 187 (557)
...++.|+|.+|+||||++..++.... .. -..+..+... ..... ..+.......+++.-.. ...+..+.....
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~-~~--g~~Vllvd~D-~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~ 172 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK-GK--GRRPLLVAAD-TQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRV 172 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH-TT--TCCEEEEECC-SSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-Hc--CCeEEEeecc-ccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHH
Confidence 457899999999999999999988873 22 2234455442 22222 22344455555432110 122334443333
Q ss_pred HHHhcCCcE-EEEEccC
Q 036236 188 FRSLREKRF-VLLLDDI 203 (557)
Q Consensus 188 ~~~l~~k~~-LlVlDdv 203 (557)
.+.++...| ++|+|-.
T Consensus 173 l~~~~~~~~DvVIIDTa 189 (425)
T 2ffh_A 173 EEKARLEARDLILVDTA 189 (425)
T ss_dssp HHHHHHTTCSEEEEECC
T ss_pred HHHHHHCCCCEEEEcCC
Confidence 344432233 6777754
No 306
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.40 E-value=0.0086 Score=52.93 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=24.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
....+|.|.|++|+||||+++.++...
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999998886
No 307
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.38 E-value=0.0097 Score=51.94 Aligned_cols=26 Identities=23% Similarity=0.475 Sum_probs=23.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...+|+|+|++|+||||+++.+....
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 45789999999999999999998764
No 308
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.38 E-value=0.0099 Score=56.65 Aligned_cols=26 Identities=35% Similarity=0.281 Sum_probs=23.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998875
No 309
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.35 E-value=0.01 Score=52.43 Aligned_cols=25 Identities=28% Similarity=0.263 Sum_probs=22.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhh
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNK 135 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~ 135 (557)
....|+|+|++|+||||+++.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999887
No 310
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.34 E-value=0.019 Score=53.22 Aligned_cols=43 Identities=19% Similarity=0.197 Sum_probs=30.7
Q ss_pred chhHHHHHHHHHHhc-cCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 94 GLQSQLEQVWRCLVV-EESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 94 Gr~~~~~~l~~~L~~-~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
+....+.++...... ......|+|.|++|+||||+|+.+.+.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 10 STIDLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CHHHHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 334444455444332 2456789999999999999999998875
No 311
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.33 E-value=0.0089 Score=55.84 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 113 GIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 113 ~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
.+|.|.|++|+||||||+.++...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999998876
No 312
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.33 E-value=0.0092 Score=51.73 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=22.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...+|+|.|++|+||||+|+.+....
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999999876
No 313
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.32 E-value=0.064 Score=54.12 Aligned_cols=91 Identities=18% Similarity=0.155 Sum_probs=48.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCC-ccCHHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHHH
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSK-DLRLEKIQEDIGKKIGLFDDSW-KSKSVEEKAVDIF 188 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 188 (557)
..++|.|+|.+|+||||++..++..+.. ... ..+.-++... .....+.+.......+++.-.. ...+..+......
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~-~~G-~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l 176 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLRE-KHK-KKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAAL 176 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHH-TSC-CCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-hcC-CeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHH
Confidence 4679999999999999999999888732 212 2345555433 2233333333444444321110 1234444434334
Q ss_pred HHhc-CCcEEEEEccC
Q 036236 189 RSLR-EKRFVLLLDDI 203 (557)
Q Consensus 189 ~~l~-~k~~LlVlDdv 203 (557)
..++ ..-=++|+|-.
T Consensus 177 ~~~~~~~~D~VIIDTp 192 (433)
T 2xxa_A 177 KEAKLKFYDVLLVDTA 192 (433)
T ss_dssp HHHHHTTCSEEEEECC
T ss_pred HHHHhCCCCEEEEECC
Confidence 4443 22236777875
No 314
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.32 E-value=0.027 Score=56.40 Aligned_cols=59 Identities=19% Similarity=0.285 Sum_probs=28.7
Q ss_pred CCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCc-cccCCCCCCeeeccCC
Q 036236 470 PTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPV-GMSKLGSLELLDISHT 532 (557)
Q Consensus 470 ~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~-~i~~L~~L~~L~l~~n 532 (557)
..|.+|+.+.+..+ +..|....|.++.+|+.+.|..+ ++.++. .+.++.+|+.+++.++
T Consensus 308 ~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 308 AGCISLKSIDIPEG--ITQILDDAFAGCEQLERIAIPSS--VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEECTT--CCBCCGGGGTTCTTCCEEEESSC
T ss_pred cCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEEECcc--cCEEhHhHhhCCCCCCEEEECCc
Confidence 34455555555433 44444444555555555555432 444432 4555555555555544
No 315
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.32 E-value=0.043 Score=52.39 Aligned_cols=89 Identities=21% Similarity=0.111 Sum_probs=51.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCc-cCHHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHHHH
Q 036236 112 VGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKD-LRLEKIQEDIGKKIGLFDDSW-KSKSVEEKAVDIFR 189 (557)
Q Consensus 112 ~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~ 189 (557)
..+++++|.+|+||||++..++..... .-..+.++..... ......+.......+.+.-.. ...+..+......+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~---~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~ 174 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKK---KGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVE 174 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHH---TTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHH
Confidence 578999999999999999999887632 1224555554322 222333444555555432110 12344555444444
Q ss_pred Hhc-CCcEEEEEccC
Q 036236 190 SLR-EKRFVLLLDDI 203 (557)
Q Consensus 190 ~l~-~k~~LlVlDdv 203 (557)
.++ +..=++|+|-.
T Consensus 175 ~~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 175 KFLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 554 33337888875
No 316
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.32 E-value=0.0095 Score=52.92 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 112 VGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 112 ~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..+|+|.|++|+||||+|+.+....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998875
No 317
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.30 E-value=0.013 Score=59.12 Aligned_cols=47 Identities=26% Similarity=0.235 Sum_probs=37.6
Q ss_pred CcccchhHHHHHHHHHHhc-------------cCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 90 PTIVGLQSQLEQVWRCLVV-------------EESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~-------------~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..++|.++.++.+...+.. ....+-|.++|++|+|||++|+.++...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 4679999988888776631 0134669999999999999999999887
No 318
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.29 E-value=0.011 Score=52.19 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=23.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
....|+|.|++|+||||+++.+.+..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998875
No 319
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.29 E-value=0.011 Score=53.63 Aligned_cols=27 Identities=30% Similarity=0.372 Sum_probs=24.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
.+.++|.|.|++|+||||.|+.+++.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999887
No 320
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.29 E-value=0.0098 Score=52.91 Aligned_cols=26 Identities=35% Similarity=0.392 Sum_probs=23.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...+|+|.|++|+||||+|+.+.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998876
No 321
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.29 E-value=0.011 Score=53.24 Aligned_cols=26 Identities=35% Similarity=0.291 Sum_probs=23.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...+|+|+|++|+||||+++.+....
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45689999999999999999998765
No 322
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.28 E-value=0.0079 Score=52.59 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 113 GIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 113 ~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..|.|.|++|+||||+|+.++...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 368999999999999999999886
No 323
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.27 E-value=0.011 Score=52.61 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=23.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..++|+|+|+.|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 56799999999999999999998775
No 324
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.27 E-value=0.0095 Score=53.38 Aligned_cols=23 Identities=35% Similarity=0.668 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 036236 114 IIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 114 vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
.|+|.|+.|+||||+++.+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999887
No 325
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.26 E-value=0.012 Score=52.87 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=23.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...+|+|.|++|+||||+|+.+.+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 55789999999999999999998875
No 326
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.23 E-value=0.0094 Score=51.93 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHH
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHIN 133 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~ 133 (557)
...+++|+|+.|+|||||++.++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 56789999999999999999643
No 327
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.22 E-value=0.0061 Score=59.54 Aligned_cols=54 Identities=19% Similarity=0.098 Sum_probs=36.6
Q ss_pred HHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCc
Q 036236 100 EQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKD 154 (557)
Q Consensus 100 ~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~ 154 (557)
-++++.+..=....-++|+|.+|+|||+|+.++.+........+. ++++-+++.
T Consensus 163 iraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER 216 (427)
T 3l0o_A 163 TRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDER 216 (427)
T ss_dssp HHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCC
T ss_pred chhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccC
Confidence 356666664456778999999999999999999887521112233 345666654
No 328
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.22 E-value=0.0086 Score=53.00 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 113 GIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 113 ~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
++++|.|+.|+|||||++.+....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998775
No 329
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.22 E-value=0.25 Score=50.26 Aligned_cols=52 Identities=13% Similarity=0.128 Sum_probs=36.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHH
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIG 165 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 165 (557)
....++.|.|.+|+||||||..++...... .-..++|++... +..++...+.
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~--~g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVATK--TNENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHHH--SSCCEEEEESSS--CHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHh--CCCcEEEEECCC--CHHHHHHHHH
Confidence 356799999999999999999998876211 123577776544 3455555553
No 330
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.20 E-value=0.011 Score=53.31 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=23.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 112 VGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 112 ~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..+|+|.|++|+||||+|+.+.+..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999987
No 331
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.19 E-value=0.011 Score=53.29 Aligned_cols=27 Identities=30% Similarity=0.373 Sum_probs=23.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
....+|+|+|+.|+|||||++.+....
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 355789999999999999999998875
No 332
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.19 E-value=0.015 Score=52.81 Aligned_cols=42 Identities=21% Similarity=0.253 Sum_probs=32.0
Q ss_pred chhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 94 GLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 94 Gr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
+..+..+.+.+.+. .....+|+|+|.+|+|||||+..+....
T Consensus 13 ~~~~~~~~~~~~~~-~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 13 ENKRLAEKNREALR-ESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHH-HHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhc-ccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34455555555554 4467899999999999999999998875
No 333
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.18 E-value=0.0082 Score=52.79 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=18.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 112 VGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 112 ~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..+|.|.|++|+||||+|+.+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998876
No 334
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.15 E-value=0.012 Score=51.74 Aligned_cols=23 Identities=43% Similarity=0.580 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 036236 114 IIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 114 vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
.++|+|+.|+|||||++.++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998775
No 335
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.15 E-value=0.013 Score=51.98 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 036236 113 GIIGLYGMGGVGKTTLLTHINNK 135 (557)
Q Consensus 113 ~vv~I~G~~GiGKTtLa~~v~~~ 135 (557)
.+++|+|+.|+|||||++.+...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 57899999999999999999764
No 336
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.14 E-value=0.02 Score=55.18 Aligned_cols=45 Identities=24% Similarity=0.234 Sum_probs=32.8
Q ss_pred ccchhHHHHHHHHHHhcc---CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 92 IVGLQSQLEQVWRCLVVE---ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 92 ~vGr~~~~~~l~~~L~~~---~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
++|-...+..+...+... +...+|+|.|+.|+||||+++.+....
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 355555555555555422 345699999999999999999988776
No 337
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.13 E-value=0.0086 Score=52.79 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 113 GIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 113 ~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
.+|+|.|++|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998876
No 338
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.13 E-value=0.013 Score=52.41 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=23.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhh
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNK 135 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~ 135 (557)
+...+|+|.|+.|+||||+++.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45679999999999999999999775
No 339
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.11 E-value=0.013 Score=52.80 Aligned_cols=26 Identities=35% Similarity=0.548 Sum_probs=23.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...+|+|+|++|+||||+|+.+....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 56789999999999999999998764
No 340
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.10 E-value=0.011 Score=52.71 Aligned_cols=26 Identities=31% Similarity=0.378 Sum_probs=23.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...+|+|.|++|+||||+|+.+.+..
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999999876
No 341
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.09 E-value=0.0097 Score=53.26 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=21.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..++++|+|+.|+|||||++.+....
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998765
No 342
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=95.09 E-value=0.016 Score=58.02 Aligned_cols=102 Identities=13% Similarity=0.132 Sum_probs=57.9
Q ss_pred HHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcc-eEEEEEeCCcc-CHHHHHHHHHHHhCCCC-----CC
Q 036236 102 VWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFD-CVIWVVVSKDL-RLEKIQEDIGKKIGLFD-----DS 174 (557)
Q Consensus 102 l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-----~~ 174 (557)
.++.|..=.+..-++|.|.+|+|||+|+.++++......++-+ .++++-+++.. .+.++.+++...=.+.. ..
T Consensus 141 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~at 220 (465)
T 3vr4_D 141 AIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNL 220 (465)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEE
T ss_pred EEecccccccCCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEEC
Confidence 4444443234556789999999999999999988621111222 56666666543 45666666654311110 00
Q ss_pred CCCCCHHH-----HHHHHHHHhc---CCcEEEEEccC
Q 036236 175 WKSKSVEE-----KAVDIFRSLR---EKRFVLLLDDI 203 (557)
Q Consensus 175 ~~~~~~~~-----~~~~l~~~l~---~k~~LlVlDdv 203 (557)
.+...... ....+.++++ ++.+||++||+
T Consensus 221 sd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 221 ANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 11111111 1223445543 68999999998
No 343
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.08 E-value=0.013 Score=52.38 Aligned_cols=26 Identities=31% Similarity=0.308 Sum_probs=23.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...+|+|.|++|+||||+|+.+....
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998876
No 344
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.05 E-value=0.01 Score=51.62 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 113 GIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 113 ~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
.+|.|.|++|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999876
No 345
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.01 E-value=0.014 Score=54.82 Aligned_cols=26 Identities=31% Similarity=0.520 Sum_probs=23.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...+|.|.|++|+||||+|+.+...+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999998874
No 346
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.00 E-value=0.013 Score=52.65 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 036236 113 GIIGLYGMGGVGKTTLLTHINN 134 (557)
Q Consensus 113 ~vv~I~G~~GiGKTtLa~~v~~ 134 (557)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999987
No 347
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.99 E-value=0.012 Score=53.68 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 112 VGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 112 ~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..+|+|+|++|+||||+++.+....
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998875
No 348
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.98 E-value=0.021 Score=57.22 Aligned_cols=102 Identities=15% Similarity=0.219 Sum_probs=78.4
Q ss_pred ccccccceEEEccccccccccC--CCCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCC-ccccCCCC
Q 036236 447 VKGWENVRRLSLMQNQIETLSE--VPTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLP-VGMSKLGS 523 (557)
Q Consensus 447 ~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP-~~i~~L~~ 523 (557)
+..+..++.+.+..+- ..+.. +.+|++|+.+.+..+ +..++...|.++.+|+.++|..+ ++.++ ..+.++.+
T Consensus 261 F~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSSR--ITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTT
T ss_pred eeecccccEEeccccc-ceecCcccccccccccccCCCc--ccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCC
Confidence 4566778888776543 23332 368899999999744 78899988999999999999864 77775 47899999
Q ss_pred CCeeeccCCCCcccCh-HHHhHhhhhhcCCCC
Q 036236 524 LELLDISHTFIKELPE-ELKKLLEAIQRAPRP 554 (557)
Q Consensus 524 L~~L~l~~n~l~~lP~-~i~~L~~L~~L~~~~ 554 (557)
|+.+.|..+ ++.++. .+.++++|+.+...+
T Consensus 336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp CCEEEECTT-CCBCCGGGGTTCTTCCEEEESS
T ss_pred CCEEEECcc-cCEEhHhHhhCCCCCCEEEECC
Confidence 999999654 888875 478889998776654
No 349
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.97 E-value=0.1 Score=53.96 Aligned_cols=53 Identities=13% Similarity=0.046 Sum_probs=38.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHH
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKK 167 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 167 (557)
...++.|.|.+|+||||||.+++.... . .+-..++|++... +..++...++..
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a-~-~~g~~vl~~s~E~--s~~~l~~r~~~~ 293 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWG-T-AMGKKVGLAMLEE--SVEETAEDLIGL 293 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHT-T-TSCCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHH-H-hcCCcEEEEeccC--CHHHHHHHHHHH
Confidence 567899999999999999999988872 1 1123577776654 455666665443
No 350
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.97 E-value=0.067 Score=51.05 Aligned_cols=90 Identities=19% Similarity=0.155 Sum_probs=48.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCcc-CHHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHHH
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDL-RLEKIQEDIGKKIGLFDDSW-KSKSVEEKAVDIF 188 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 188 (557)
...+++|+|.+|+||||++..++..... .-..+.++...... .....+..+.+..+++.-.. ...+..++.....
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~---~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l 173 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG---KGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHH---TTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHH
Confidence 4578999999999999999999887632 12234555443221 11122334445555432110 1233444433333
Q ss_pred HHh-cCCcEEEEEccC
Q 036236 189 RSL-REKRFVLLLDDI 203 (557)
Q Consensus 189 ~~l-~~k~~LlVlDdv 203 (557)
..+ ....=++|+|-.
T Consensus 174 ~~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 174 EKARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHHTCCEEEEECC
T ss_pred HHHHhCCCCEEEEeCC
Confidence 333 344557888976
No 351
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.94 E-value=0.033 Score=59.11 Aligned_cols=44 Identities=18% Similarity=0.241 Sum_probs=38.3
Q ss_pred CcccchhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..++|.+..++.+...+. ....+.|+|++|+||||||+.++...
T Consensus 41 ~~i~G~~~~l~~l~~~i~---~g~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAAN---QKRHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHCCSCHHHHHHHHHHHH---TTCCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ceEECchhhHhhcccccc---CCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 458999999988888887 33689999999999999999999876
No 352
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.94 E-value=0.014 Score=52.74 Aligned_cols=26 Identities=19% Similarity=0.180 Sum_probs=23.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...+|+|.|+.|+||||+++.+.+..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999999876
No 353
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.92 E-value=0.014 Score=51.60 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=23.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...+|+|.|++|+||||+|+.+....
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998876
No 354
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.91 E-value=0.015 Score=52.58 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=23.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...+|+|.|++|+||||+|+.+.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999876
No 355
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.91 E-value=0.014 Score=50.36 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 036236 114 IIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 114 vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
.|+|.|++|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999876
No 356
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.90 E-value=0.014 Score=56.18 Aligned_cols=41 Identities=22% Similarity=0.380 Sum_probs=30.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCC
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSK 153 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 153 (557)
++.++|+|.|-|||||||.+..++.-+.. .-..+.-|++..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~---~GkkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSI---LGKRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHH---CCCeEEEEecCC
Confidence 36789999999999999999998877732 122466666553
No 357
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.90 E-value=0.014 Score=54.17 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=23.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...+|+|+|++|+|||||++.+++..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999999765
No 358
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.88 E-value=0.015 Score=51.66 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 036236 114 IIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 114 vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
+|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998876
No 359
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.86 E-value=0.022 Score=53.12 Aligned_cols=26 Identities=35% Similarity=0.339 Sum_probs=23.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...+|.|.|++|+||||+|+.+....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998876
No 360
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.86 E-value=0.016 Score=52.28 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=23.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...+++|+|+.|+|||||++.+..-.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 56799999999999999999998876
No 361
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.86 E-value=0.015 Score=52.93 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=23.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
....|.|.|++|+||||+|+.++...
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34679999999999999999998876
No 362
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.86 E-value=0.015 Score=52.21 Aligned_cols=22 Identities=41% Similarity=0.527 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 036236 113 GIIGLYGMGGVGKTTLLTHINN 134 (557)
Q Consensus 113 ~vv~I~G~~GiGKTtLa~~v~~ 134 (557)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 363
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.84 E-value=0.015 Score=53.22 Aligned_cols=26 Identities=27% Similarity=0.370 Sum_probs=22.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
....|.|.|++|+||||+|+.+.+..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999998876
No 364
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.82 E-value=0.017 Score=51.79 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 112 VGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 112 ~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...|+|.|+.|+||||+++.+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998875
No 365
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.80 E-value=0.014 Score=53.20 Aligned_cols=26 Identities=35% Similarity=0.569 Sum_probs=23.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...+++|+|+.|+|||||++.+....
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 56789999999999999999998865
No 366
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.78 E-value=0.02 Score=49.05 Aligned_cols=27 Identities=33% Similarity=0.315 Sum_probs=24.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
....+++|.|+.|.|||||++.++.-.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 466799999999999999999998875
No 367
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.77 E-value=0.017 Score=52.53 Aligned_cols=27 Identities=15% Similarity=0.192 Sum_probs=23.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
+...+++|+|+.|+|||||++.+....
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 356799999999999999999998875
No 368
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.74 E-value=0.018 Score=55.47 Aligned_cols=27 Identities=30% Similarity=0.294 Sum_probs=24.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
....+|+|.|+.|+|||||++.+..-.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 466899999999999999999998876
No 369
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=94.74 E-value=0.025 Score=56.66 Aligned_cols=102 Identities=11% Similarity=0.173 Sum_probs=58.2
Q ss_pred HHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCC-------CCcc-eEEEEEeCCcc-CHHHHHHHHHHHhCCCC
Q 036236 102 VWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENP-------INFD-CVIWVVVSKDL-RLEKIQEDIGKKIGLFD 172 (557)
Q Consensus 102 l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~-------~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~~ 172 (557)
.++.|..=.+..-++|.|.+|+|||+|+.++++...... ++-+ .++++-+++.. ...++.+++...=.+..
T Consensus 137 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~r 216 (464)
T 3gqb_B 137 TIDVMNTLVRGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSR 216 (464)
T ss_dssp HHHTTSCCBTTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGG
T ss_pred eeecccccccCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccc
Confidence 445554334556788999999999999999988862110 1222 56666676543 45566666544210100
Q ss_pred -----CCCCCCCHHHH-----HHHHHHHhc---CCcEEEEEccC
Q 036236 173 -----DSWKSKSVEEK-----AVDIFRSLR---EKRFVLLLDDI 203 (557)
Q Consensus 173 -----~~~~~~~~~~~-----~~~l~~~l~---~k~~LlVlDdv 203 (557)
...+....... .-.+.++++ ++.+|+++||+
T Consensus 217 tvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 217 SVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 01112222222 223445543 68999999998
No 370
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.73 E-value=0.019 Score=53.32 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=23.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
+...+|+|.|+.|+|||||++.+....
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999987754
No 371
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.72 E-value=0.019 Score=53.61 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=23.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
....+|+|.|++|+||||+|+.+...+
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998865
No 372
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.72 E-value=0.018 Score=53.67 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=23.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...+|+|+|+.|+||||+++.+...+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 45799999999999999999999776
No 373
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.69 E-value=0.018 Score=49.74 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=23.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..++++|.|..|+|||||+..+...+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 45789999999999999999998876
No 374
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.69 E-value=0.021 Score=50.67 Aligned_cols=27 Identities=33% Similarity=0.533 Sum_probs=23.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
....+|+|+|+.|+||||+++.+.+..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhc
Confidence 356799999999999999999998874
No 375
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.67 E-value=0.017 Score=52.30 Aligned_cols=23 Identities=39% Similarity=0.524 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 036236 114 IIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 114 vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
.|+|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 376
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.66 E-value=0.063 Score=51.82 Aligned_cols=26 Identities=38% Similarity=0.622 Sum_probs=23.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...+|+|+|.+|+||||++..++...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999998876
No 377
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.65 E-value=0.019 Score=52.10 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 036236 114 IIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 114 vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
.|+|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 378
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.64 E-value=0.015 Score=52.94 Aligned_cols=26 Identities=23% Similarity=0.209 Sum_probs=23.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
....|.|.|++|+||||+|+.+++..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34678999999999999999999886
No 379
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.64 E-value=0.076 Score=62.98 Aligned_cols=86 Identities=17% Similarity=0.126 Sum_probs=59.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCCC---CCCCHHHHHHHH
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDSW---KSKSVEEKAVDI 187 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 187 (557)
...++.|+|++|+||||||.+++.... ..-..++|++.....+.. .++.++.+.+.. ...+.++....+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a---~~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~I~~~~~~e~il~~~ 453 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEIC 453 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEECTTSCCCHH-----HHHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEEcCCCHHHH-----HHHHcCCCHHHeEEeCCCCHHHHHHHH
Confidence 668999999999999999999988873 222468888887766643 255666644321 234556666655
Q ss_pred HHHh-cCCcEEEEEccCC
Q 036236 188 FRSL-REKRFVLLLDDIW 204 (557)
Q Consensus 188 ~~~l-~~k~~LlVlDdv~ 204 (557)
.... ..+.-+||+|-+.
T Consensus 454 ~~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 454 DALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHHhcCCcEEEECCHH
Confidence 5444 3456799999984
No 380
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.64 E-value=0.059 Score=54.65 Aligned_cols=52 Identities=10% Similarity=0.018 Sum_probs=36.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHH
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGK 166 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 166 (557)
....++.|.|.+|+||||+|.+++..... . -..++|++... +..++...+..
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~-~--g~~vl~fSlEm--s~~ql~~R~~~ 246 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSD-N--DDVVNLHSLEM--GKKENIKRLIV 246 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHH-T--TCEEEEECSSS--CTTHHHHHHHH
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHH-c--CCEEEEEECCC--CHHHHHHHHHH
Confidence 36679999999999999999999888732 2 23577766543 33445555444
No 381
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.62 E-value=0.21 Score=51.28 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=22.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..++|+|+|.+|+||||++..++..+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999998776
No 382
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.61 E-value=0.2 Score=50.85 Aligned_cols=53 Identities=9% Similarity=-0.082 Sum_probs=37.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHH
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKK 167 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 167 (557)
...++.|.|.+|+||||||..++...... .-..++|++... +..++...++..
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~--~g~~vl~~slE~--~~~~l~~R~~~~ 251 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALK--EGVGVGIYSLEM--PAAQLTLRMMCS 251 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT--TCCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEECCC--CHHHHHHHHHHH
Confidence 56799999999999999999998876321 123577776653 455666665543
No 383
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=94.59 E-value=0.18 Score=51.15 Aligned_cols=98 Identities=16% Similarity=0.129 Sum_probs=57.9
Q ss_pred HHHHHHhccCCeeEEEEEcCCCCcHHHHHH-HHHhhcccCCCCcc-eEEEEEeCCcc-CHHHHHHHHHHHhCCCCC----
Q 036236 101 QVWRCLVVEESVGIIGLYGMGGVGKTTLLT-HINNKFLENPINFD-CVIWVVVSKDL-RLEKIQEDIGKKIGLFDD---- 173 (557)
Q Consensus 101 ~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~-~v~~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---- 173 (557)
+.++.+..=....-++|.|.+|+|||+||. .+.+.. ..+ .++++-+++.. ...++.+.+...=.+...
T Consensus 151 raID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~ 225 (502)
T 2qe7_A 151 KAIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQK-----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVT 225 (502)
T ss_dssp HHHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGG-----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEE
T ss_pred eecccccccccCCEEEEECCCCCCchHHHHHHHHHhh-----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEE
Confidence 345555533566788999999999999964 666664 244 34677777654 456666666653222111
Q ss_pred -CCCCCCHHHH-----HHHHHHHh--cCCcEEEEEccC
Q 036236 174 -SWKSKSVEEK-----AVDIFRSL--REKRFVLLLDDI 203 (557)
Q Consensus 174 -~~~~~~~~~~-----~~~l~~~l--~~k~~LlVlDdv 203 (557)
..+....... ...+.+++ +++.+|+++||+
T Consensus 226 atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 226 ASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 0111111111 12233444 468999999997
No 384
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=94.57 E-value=0.024 Score=56.70 Aligned_cols=95 Identities=13% Similarity=0.256 Sum_probs=54.7
Q ss_pred ccccceEEEccccccccccCC--CCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCCc-cccCCCCCC
Q 036236 449 GWENVRRLSLMQNQIETLSEV--PTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLPV-GMSKLGSLE 525 (557)
Q Consensus 449 ~~~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP~-~i~~L~~L~ 525 (557)
.+.++..+.+..+ +..++.. .+|.+|+.+.+..+ +..+....|.++.+|+.+++..+ ++.++. .+.++.+|+
T Consensus 295 ~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~ 369 (394)
T 4fs7_A 295 GCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLK 369 (394)
T ss_dssp TCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCC
T ss_pred ccccccccccccc-cceechhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCC
Confidence 4455555555432 4444332 56677777777543 56666666777777777777554 555533 566777777
Q ss_pred eeeccCCCCcccChHHHhHhhhhh
Q 036236 526 LLDISHTFIKELPEELKKLLEAIQ 549 (557)
Q Consensus 526 ~L~l~~n~l~~lP~~i~~L~~L~~ 549 (557)
.+++..+ ++.+...+.++++|+.
T Consensus 370 ~i~lp~~-~~~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 370 KVELPKR-LEQYRYDFEDTTKFKW 392 (394)
T ss_dssp EEEEEGG-GGGGGGGBCTTCEEEE
T ss_pred EEEECCC-CEEhhheecCCCCCcE
Confidence 7776543 4444445555555543
No 385
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.56 E-value=0.019 Score=51.00 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 036236 114 IIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 114 vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
.|+|.|+.|+||||+++.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998886
No 386
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.56 E-value=0.011 Score=53.46 Aligned_cols=24 Identities=33% Similarity=0.667 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 113 GIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 113 ~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
.+|+|.|+.|+||||+++.+...+
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 378999999999999999998876
No 387
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.55 E-value=0.022 Score=51.43 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=24.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
....+|.|.|+.|+||||+++.+....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999998876
No 388
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.51 E-value=0.054 Score=63.38 Aligned_cols=86 Identities=19% Similarity=0.161 Sum_probs=62.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCCC---CCCCHHHHHHH
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDSW---KSKSVEEKAVD 186 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~ 186 (557)
+..++|-|+|+.|+||||||.++.... +..-...+|+...+..++.- ++.+|+..++. .+...++....
T Consensus 1429 prg~~iei~g~~~sGkttl~~~~~a~~---~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~ 1500 (1706)
T 3cmw_A 1429 PMGRIVEIYGPESSGKTTLTLQVIAAA---QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEI 1500 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHH---HHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHH---HhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHH
Confidence 366899999999999999999998765 33456788888887777653 77788766543 33444555555
Q ss_pred HHHHhcC-CcEEEEEccC
Q 036236 187 IFRSLRE-KRFVLLLDDI 203 (557)
Q Consensus 187 l~~~l~~-k~~LlVlDdv 203 (557)
+...++. ..-++|+|-|
T Consensus 1501 ~~~~~~s~~~~~vvvDsv 1518 (1706)
T 3cmw_A 1501 CDALARSGAVDVIVVDSV 1518 (1706)
T ss_dssp HHHHHHHTCCSEEEESCS
T ss_pred HHHHHHcCCCCEEEEccH
Confidence 5555544 5669999998
No 389
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.45 E-value=0.024 Score=49.61 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=23.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...+|+|.|+.|+||||+++.+....
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998875
No 390
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.43 E-value=0.07 Score=62.44 Aligned_cols=86 Identities=19% Similarity=0.156 Sum_probs=59.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCCC---CCCCHHHHHHHH
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDSW---KSKSVEEKAVDI 187 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 187 (557)
..+++.|+|++|+||||||.+++..... .-..++|++.....+.. .++.++.+.+.. ...+.++....+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~~---~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l 453 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEIC 453 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH---hCCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHH
Confidence 6689999999999999999999887632 23468898887776653 256666654321 233455655555
Q ss_pred HHHhc-CCcEEEEEccCC
Q 036236 188 FRSLR-EKRFVLLLDDIW 204 (557)
Q Consensus 188 ~~~l~-~k~~LlVlDdv~ 204 (557)
....+ .+.-+||+|-+.
T Consensus 454 ~~lv~~~~~~lVVIDSL~ 471 (1706)
T 3cmw_A 454 DALARSGAVDVIVVDSVA 471 (1706)
T ss_dssp HHHHHHTCCSEEEESCST
T ss_pred HHHHHhcCCCEEEECCHH
Confidence 54443 456699999984
No 391
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=94.41 E-value=0.088 Score=53.82 Aligned_cols=59 Identities=17% Similarity=0.258 Sum_probs=43.0
Q ss_pred HHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccC-HHHHHHHH
Q 036236 101 QVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLR-LEKIQEDI 164 (557)
Q Consensus 101 ~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i 164 (557)
+.++.|..=.+...++|.|..|+|||+|+.++++.. +-+.++++-+++... ..++.+++
T Consensus 216 rvID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~-----~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 216 RVIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWS-----DAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHS-----SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred chhhccCCcccCCeEEeecCCCCCHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHH
Confidence 355666533467789999999999999999998764 235788888887654 45565554
No 392
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.39 E-value=0.045 Score=52.64 Aligned_cols=27 Identities=26% Similarity=0.246 Sum_probs=24.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
+...+|+|.|+.|+|||||++.+....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999998865
No 393
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.31 E-value=0.026 Score=54.16 Aligned_cols=26 Identities=27% Similarity=0.525 Sum_probs=23.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...+++|+|++|+||||+++.++...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 56799999999999999999998876
No 394
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=94.30 E-value=0.28 Score=49.61 Aligned_cols=97 Identities=13% Similarity=0.155 Sum_probs=56.7
Q ss_pred HHHHHhccCCeeEEEEEcCCCCcHHHHH-HHHHhhcccCCCCcc-eEEEEEeCCcc-CHHHHHHHHHHHhCCCCC-----
Q 036236 102 VWRCLVVEESVGIIGLYGMGGVGKTTLL-THINNKFLENPINFD-CVIWVVVSKDL-RLEKIQEDIGKKIGLFDD----- 173 (557)
Q Consensus 102 l~~~L~~~~~~~vv~I~G~~GiGKTtLa-~~v~~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~----- 173 (557)
.++.+..=.+..-++|.|..|+|||+|| ..+.+.. ..+ .++++-+++.. .+.++.+.+...=.+...
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~-----~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~a 226 (513)
T 3oaa_A 152 AVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQR-----DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVA 226 (513)
T ss_dssp HHHHHSCCBTTCBCEEEESSSSSHHHHHHHHHHTTS-----SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEE
T ss_pred eeccccccccCCEEEeecCCCCCcchHHHHHHHhhc-----cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEE
Confidence 4555553346678899999999999996 4666643 233 45778887764 456666766553222110
Q ss_pred CCCCCCHHHH-----HHHHHHHh--cCCcEEEEEccC
Q 036236 174 SWKSKSVEEK-----AVDIFRSL--REKRFVLLLDDI 203 (557)
Q Consensus 174 ~~~~~~~~~~-----~~~l~~~l--~~k~~LlVlDdv 203 (557)
..+....... ...+.+++ +++.+||++||+
T Consensus 227 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 263 (513)
T 3oaa_A 227 TASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDL 263 (513)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETH
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecCh
Confidence 0011111111 11223333 579999999998
No 395
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.24 E-value=0.022 Score=51.65 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 112 VGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 112 ~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...|.|.|++|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999886
No 396
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.23 E-value=0.047 Score=50.80 Aligned_cols=39 Identities=18% Similarity=0.185 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcc-CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 98 QLEQVWRCLVVE-ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 98 ~~~~l~~~L~~~-~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
-..-+..++... +....+.++|++|+|||.+|..+++..
T Consensus 89 ~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 344466666633 445689999999999999999998864
No 397
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.21 E-value=0.026 Score=50.74 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 036236 114 IIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 114 vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
+|.|.|++|+||+|.|+.+++++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999887
No 398
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.21 E-value=0.03 Score=50.83 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 036236 112 VGIIGLYGMGGVGKTTLLTHINN 134 (557)
Q Consensus 112 ~~vv~I~G~~GiGKTtLa~~v~~ 134 (557)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 399
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.15 E-value=0.029 Score=54.15 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=23.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...+|+|+|+.|+||||||..++..+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 44689999999999999999998876
No 400
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.14 E-value=0.028 Score=54.39 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 113 GIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 113 ~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
.+|+|.|+.|+||||||..++...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999999886
No 401
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.14 E-value=0.03 Score=53.33 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 112 VGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 112 ~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..+|+|.|+.|+||||||..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4689999999999999999998875
No 402
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.12 E-value=0.052 Score=52.73 Aligned_cols=107 Identities=14% Similarity=0.028 Sum_probs=57.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGKKIGLFDDSWKSKSVEEKAVDIFRS 190 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 190 (557)
...+++|+|+.|.|||||++.+..... .-.+.+.+.-......... -..++. -..........+...
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~----~~~g~i~i~~~~e~~~~~~----~~~i~~-----~~ggg~~~r~~la~a 236 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIP----KEERIISIEDTEEIVFKHH----KNYTQL-----FFGGNITSADCLKSC 236 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSC----TTSCEEEEESSCCCCCSSC----SSEEEE-----ECBTTBCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc----CCCcEEEECCeeccccccc----hhEEEE-----EeCCChhHHHHHHHH
Confidence 446899999999999999999988762 1234555542211110000 000000 000122344556677
Q ss_pred hcCCcEEEEEccCCCccccccccccCCCCCCCCcEEEEeeCChH
Q 036236 191 LREKRFVLLLDDIWERVDLTKVGVPLPGPQNTTSKVVFTTRSID 234 (557)
Q Consensus 191 l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~s~iliTtR~~~ 234 (557)
|..++=++++|++.....++.+ ..+. .++.-+|+||....
T Consensus 237 L~~~p~ilildE~~~~e~~~~l-~~~~---~g~~tvi~t~H~~~ 276 (330)
T 2pt7_A 237 LRMRPDRIILGELRSSEAYDFY-NVLC---SGHKGTLTTLHAGS 276 (330)
T ss_dssp TTSCCSEEEECCCCSTHHHHHH-HHHH---TTCCCEEEEEECSS
T ss_pred hhhCCCEEEEcCCChHHHHHHH-HHHh---cCCCEEEEEEcccH
Confidence 8888889999998654333322 2222 22123666666533
No 403
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.12 E-value=0.027 Score=51.50 Aligned_cols=26 Identities=15% Similarity=0.351 Sum_probs=22.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...+|+|.|++|+||||+|+.+...+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998876
No 404
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.10 E-value=0.029 Score=53.20 Aligned_cols=24 Identities=29% Similarity=0.685 Sum_probs=21.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHh
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINN 134 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~ 134 (557)
...+|+|.|++|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999983
No 405
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=94.09 E-value=0.063 Score=54.42 Aligned_cols=97 Identities=12% Similarity=0.109 Sum_probs=56.6
Q ss_pred HHHHHhccCCeeEEEEEcCCCCcHHHHHH-HHHhhcccCCCCcc-eEEEEEeCCcc-CHHHHHHHHHHHhCCCC-----C
Q 036236 102 VWRCLVVEESVGIIGLYGMGGVGKTTLLT-HINNKFLENPINFD-CVIWVVVSKDL-RLEKIQEDIGKKIGLFD-----D 173 (557)
Q Consensus 102 l~~~L~~~~~~~vv~I~G~~GiGKTtLa~-~v~~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-----~ 173 (557)
.++.+..=....-++|.|.+|+|||+||. .+.+.. ..+ .++++-+++.. .+.++.+.+...=.+.. .
T Consensus 165 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~a 239 (515)
T 2r9v_A 165 AIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQK-----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVA 239 (515)
T ss_dssp HHHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTT-----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEE
T ss_pred ccccccccccCCEEEEEcCCCCCccHHHHHHHHHhh-----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEE
Confidence 45555533466788999999999999964 666654 245 35677777654 45666666654211110 0
Q ss_pred CCCCCCHHHH-----HHHHHHHh--cCCcEEEEEccC
Q 036236 174 SWKSKSVEEK-----AVDIFRSL--REKRFVLLLDDI 203 (557)
Q Consensus 174 ~~~~~~~~~~-----~~~l~~~l--~~k~~LlVlDdv 203 (557)
..+....... ...+.+++ +++.+|+++||+
T Consensus 240 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 240 SASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccH
Confidence 0111111111 12233444 468999999997
No 406
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.09 E-value=0.023 Score=52.81 Aligned_cols=25 Identities=32% Similarity=0.308 Sum_probs=23.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 112 VGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 112 ~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..+|+|+|+.|+||||+++.+....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999999876
No 407
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.08 E-value=0.027 Score=52.24 Aligned_cols=24 Identities=29% Similarity=0.263 Sum_probs=21.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHh
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINN 134 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~ 134 (557)
...+++|+|+.|+|||||++.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 567999999999999999999874
No 408
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.05 E-value=0.035 Score=49.92 Aligned_cols=25 Identities=28% Similarity=0.198 Sum_probs=22.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhh
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNK 135 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~ 135 (557)
...+++|+|+.|.|||||++.++.-
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999998765
No 409
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.05 E-value=0.11 Score=52.71 Aligned_cols=26 Identities=35% Similarity=0.567 Sum_probs=23.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...+++|+|..|+|||||++.++...
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 56799999999999999999998876
No 410
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.04 E-value=0.019 Score=52.63 Aligned_cols=26 Identities=27% Similarity=0.236 Sum_probs=17.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHH-hhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHIN-NKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~-~~~ 136 (557)
...+++|+|+.|+|||||++.+. ...
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 45789999999999999999998 654
No 411
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.03 E-value=0.059 Score=49.33 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=24.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
....|+|.|++|+||||+++.+.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999999988
No 412
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.02 E-value=0.031 Score=51.32 Aligned_cols=26 Identities=27% Similarity=0.264 Sum_probs=23.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
....|.|.|++|+||||+|+.+.+.+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 44679999999999999999999886
No 413
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.00 E-value=0.03 Score=50.26 Aligned_cols=23 Identities=17% Similarity=0.407 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 036236 114 IIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 114 vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
+|+|.|+.|+||||+++.+....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998876
No 414
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.00 E-value=0.031 Score=53.69 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 112 VGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 112 ~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..+|.|+|+.|+||||||..++...
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3589999999999999999999886
No 415
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=93.98 E-value=0.049 Score=54.88 Aligned_cols=102 Identities=13% Similarity=0.080 Sum_probs=59.5
Q ss_pred HHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCC-cceEEEEEeCCcc-CHHHHHHHHHHHhCCCC-----CC
Q 036236 102 VWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPIN-FDCVIWVVVSKDL-RLEKIQEDIGKKIGLFD-----DS 174 (557)
Q Consensus 102 l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~-f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-----~~ 174 (557)
.++.|..=....-++|.|.+|+|||+|+.++++........ -+.++++-+++.. ...++.+++...=.+.. ..
T Consensus 142 ~ID~l~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~t 221 (469)
T 2c61_A 142 TIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNL 221 (469)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEE
T ss_pred eeeeeeccccCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEEC
Confidence 45555533456677889999999999999999886221111 1356677676544 45667766665321111 00
Q ss_pred CCCCCHH-----HHHHHHHHHhc---CCcEEEEEccC
Q 036236 175 WKSKSVE-----EKAVDIFRSLR---EKRFVLLLDDI 203 (557)
Q Consensus 175 ~~~~~~~-----~~~~~l~~~l~---~k~~LlVlDdv 203 (557)
.+..... ...-.+.++++ ++.+|+++||+
T Consensus 222 sd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 222 ADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 0111111 11223444544 68999999997
No 416
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.97 E-value=0.021 Score=49.69 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 113 GIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 113 ~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
.+++|+|..|+|||||++.+....
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998776
No 417
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.96 E-value=0.03 Score=51.07 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 036236 114 IIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 114 vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998876
No 418
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.95 E-value=0.03 Score=50.65 Aligned_cols=23 Identities=35% Similarity=0.313 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 036236 114 IIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 114 vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
.|+|.|++|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 419
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.92 E-value=0.029 Score=51.62 Aligned_cols=27 Identities=26% Similarity=0.366 Sum_probs=23.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
....+++|+|+.|+|||||++.+..-.
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 356799999999999999999997765
No 420
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.91 E-value=0.028 Score=49.79 Aligned_cols=24 Identities=38% Similarity=0.454 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 113 GIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 113 ~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
.+++|+|+.|+|||||++.++...
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 368999999999999999988765
No 421
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=93.84 E-value=0.11 Score=52.81 Aligned_cols=103 Identities=13% Similarity=0.088 Sum_probs=58.4
Q ss_pred HHHHHHhccCCeeEEEEEcCCCCcHHHHH-HHHHhhccc---CCCCcc-eEEEEEeCCcc-CHHHHHHHHHHHhCCCCC-
Q 036236 101 QVWRCLVVEESVGIIGLYGMGGVGKTTLL-THINNKFLE---NPINFD-CVIWVVVSKDL-RLEKIQEDIGKKIGLFDD- 173 (557)
Q Consensus 101 ~l~~~L~~~~~~~vv~I~G~~GiGKTtLa-~~v~~~~~~---~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~- 173 (557)
+.++.+..=....-++|.|.+|+|||+|| ..+.+.... ...+.+ .++++-+++.. .+.++.+.+...=.+...
T Consensus 151 raID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tv 230 (510)
T 2ck3_A 151 KAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTI 230 (510)
T ss_dssp HHHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEE
T ss_pred eeeccccccccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccce
Confidence 34555553356678899999999999995 466666510 012244 46777777654 456666666553211110
Q ss_pred ----CCCCCCHHHH-----HHHHHHHh--cCCcEEEEEccC
Q 036236 174 ----SWKSKSVEEK-----AVDIFRSL--REKRFVLLLDDI 203 (557)
Q Consensus 174 ----~~~~~~~~~~-----~~~l~~~l--~~k~~LlVlDdv 203 (557)
..+....... ...+.+++ +++.+||++||+
T Consensus 231 vV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 271 (510)
T 2ck3_A 231 VVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDL 271 (510)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCH
Confidence 0111111111 12233444 468999999998
No 422
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.81 E-value=0.037 Score=52.96 Aligned_cols=26 Identities=31% Similarity=0.521 Sum_probs=23.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...+++|+|+.|+||||+++.++...
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998876
No 423
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.79 E-value=0.038 Score=48.13 Aligned_cols=26 Identities=27% Similarity=0.471 Sum_probs=23.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...+++|.|+.|+|||||+..+....
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999998875
No 424
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.79 E-value=0.068 Score=54.64 Aligned_cols=41 Identities=24% Similarity=0.381 Sum_probs=30.4
Q ss_pred chhHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 94 GLQSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 94 Gr~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
+..+.++.+...+. ++ .+.+.|.|.+|+|||+++..+....
T Consensus 29 ~Q~~av~~~~~~i~-~~-~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 29 GQKNAFNIVMKAIK-EK-KHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp HHHHHHHHHHHHHH-SS-SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-cC-CCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34445555555665 22 2489999999999999999998887
No 425
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.79 E-value=0.036 Score=51.10 Aligned_cols=26 Identities=27% Similarity=0.324 Sum_probs=23.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
+. .+++|+|+.|.|||||.+.++.-.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 46 899999999999999999998765
No 426
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.78 E-value=0.042 Score=52.22 Aligned_cols=26 Identities=27% Similarity=0.241 Sum_probs=23.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...+|.|.|+.|+||||||..++...
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 45789999999999999999999876
No 427
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.73 E-value=0.075 Score=52.24 Aligned_cols=38 Identities=24% Similarity=0.403 Sum_probs=29.2
Q ss_pred HHHHHHHHhc-cCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 99 LEQVWRCLVV-EESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 99 ~~~l~~~L~~-~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..++.+.+.. .+...+|+|+|.+|+|||||+..+....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4445554442 3567899999999999999999988776
No 428
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=93.72 E-value=0.082 Score=53.64 Aligned_cols=89 Identities=16% Similarity=0.188 Sum_probs=51.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHH-HHHhhcccCCCCcc-eEEEEEeCCcc-CHHHHHHHHHHHhCCCC--------CC--CC
Q 036236 110 ESVGIIGLYGMGGVGKTTLLT-HINNKFLENPINFD-CVIWVVVSKDL-RLEKIQEDIGKKIGLFD--------DS--WK 176 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~-~v~~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~~--------~~--~~ 176 (557)
.+..-++|.|.+|+|||+||. .+.+.. ..+ .++++-+++.. ...++.+.+...=.+.. +. ..
T Consensus 161 grGQR~~Ifg~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~ 235 (507)
T 1fx0_A 161 GRGQRELIIGDRQTGKTAVATDTILNQQ-----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATL 235 (507)
T ss_dssp BTTCBCBEEESSSSSHHHHHHHHHHTCC-----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGG
T ss_pred ccCCEEEEecCCCCCccHHHHHHHHHhh-----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHH
Confidence 356678999999999999964 666654 244 35677777654 34555555544211110 00 00
Q ss_pred CCCHHHHHHHHHHHh--cCCcEEEEEccC
Q 036236 177 SKSVEEKAVDIFRSL--REKRFVLLLDDI 203 (557)
Q Consensus 177 ~~~~~~~~~~l~~~l--~~k~~LlVlDdv 203 (557)
..-.......+.+++ +++.+|+++||+
T Consensus 236 r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 264 (507)
T 1fx0_A 236 QYLAPYTGAALAEYFMYRERHTLIIYDDL 264 (507)
T ss_dssp TTHHHHHHHHHHHHHHHTTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 111111222233333 579999999997
No 429
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.71 E-value=0.076 Score=50.66 Aligned_cols=53 Identities=17% Similarity=0.151 Sum_probs=34.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHH
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGK 166 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 166 (557)
....+++|.|++|+|||||+..++....... -..++|+.... ...++...+..
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~--G~~v~~~~~e~--~~~~~~~r~~~ 85 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAM--GKKVGLAMLEE--SVEETAEDLIG 85 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHHTS--CCCEEEEESSS--CHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHc--CCeEEEEeCcC--CHHHHHHHHHH
Confidence 3667999999999999999999988762211 11466665432 33444444443
No 430
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.68 E-value=0.032 Score=50.94 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=23.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...+++|+|+.|+|||||.+.++.-.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 55789999999999999999997664
No 431
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.66 E-value=0.038 Score=48.80 Aligned_cols=26 Identities=19% Similarity=0.080 Sum_probs=22.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..+.|.|.|++|+||||||.++..+.
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 34678999999999999999998775
No 432
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.66 E-value=0.034 Score=51.19 Aligned_cols=27 Identities=22% Similarity=0.454 Sum_probs=23.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
....+++|+|+.|+|||||++.+..-.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356799999999999999999997764
No 433
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=93.61 E-value=0.32 Score=49.97 Aligned_cols=59 Identities=19% Similarity=0.238 Sum_probs=42.5
Q ss_pred HHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCcc-CHHHHHHHH
Q 036236 101 QVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDL-RLEKIQEDI 164 (557)
Q Consensus 101 ~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i 164 (557)
+.++.|..=.+..-++|.|..|+|||+|+.++.+.. +-+.++++-+++.. ...++++++
T Consensus 221 rvID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~-----~~~v~V~~~iGER~~Ev~e~~~~~ 280 (600)
T 3vr4_A 221 RVIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWS-----DVDLVVYVGCGERGNEMTDVVNEF 280 (600)
T ss_dssp HHHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHS-----SCSEEEEEEEEECHHHHHHHHHHT
T ss_pred hhhhccCCccCCCEEeeecCCCccHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHH
Confidence 356666644567789999999999999999998874 23567888777653 445555544
No 434
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.58 E-value=0.058 Score=51.82 Aligned_cols=43 Identities=21% Similarity=0.346 Sum_probs=30.7
Q ss_pred cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCc
Q 036236 109 EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKD 154 (557)
Q Consensus 109 ~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~ 154 (557)
....++|+|+|-||+||||+|..++..+... -..++-|+....
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~---G~~VlliD~D~~ 80 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSIL---GKRVLQIGCDPK 80 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEEESSS
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHHC---CCeEEEEeCCCC
Confidence 3467889999999999999999998887321 224666666543
No 435
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.54 E-value=0.042 Score=52.46 Aligned_cols=27 Identities=15% Similarity=0.226 Sum_probs=24.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
+...+++|+|+.|.|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 577899999999999999999988764
No 436
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.54 E-value=0.036 Score=51.89 Aligned_cols=27 Identities=33% Similarity=0.447 Sum_probs=23.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
....+++|+|+.|+|||||++.++.-.
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 466799999999999999999997765
No 437
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=93.52 E-value=0.023 Score=60.12 Aligned_cols=46 Identities=24% Similarity=0.221 Sum_probs=34.8
Q ss_pred CcccchhHHHHHHHHHHhccCCee-----------EEEEEcCCCCcHHHHHHHHHhhc
Q 036236 90 PTIVGLQSQLEQVWRCLVVEESVG-----------IIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 90 ~~~vGr~~~~~~l~~~L~~~~~~~-----------vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
+.++|.+..+..+.-.+. .+..+ -|.++|++|+|||+||+.+++..
T Consensus 295 ~~I~G~e~vk~al~~~l~-~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 295 PSIYGHWELKEALALALF-GGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp STTSCCHHHHHHHTTTTT-CCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred chhcChHHHHHHHHHHHh-CCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 467899887776655555 22111 58999999999999999998775
No 438
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.52 E-value=0.024 Score=54.07 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=20.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
+..+|+|.|+.|+||||+|+.+.+.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998765
No 439
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=93.46 E-value=0.11 Score=50.47 Aligned_cols=45 Identities=24% Similarity=0.231 Sum_probs=33.4
Q ss_pred cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccC
Q 036236 109 EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLR 156 (557)
Q Consensus 109 ~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~ 156 (557)
+...+++.+.|-||+||||+|..++.... ..-..++-|+.....+
T Consensus 13 ~~~~~i~~~sgkGGvGKTt~a~~lA~~la---~~g~~vllid~D~~~~ 57 (334)
T 3iqw_A 13 QRSLRWIFVGGKGGVGKTTTSCSLAIQLA---KVRRSVLLLSTDPAHN 57 (334)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHT---TSSSCEEEEECCSSCH
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHH---hCCCcEEEEECCCCCC
Confidence 45578899999999999999999988873 2233566666664443
No 440
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.41 E-value=0.063 Score=50.49 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=23.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
....+++|+|+.|.|||||++.++.-.
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 466799999999999999999997764
No 441
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.40 E-value=0.049 Score=50.92 Aligned_cols=110 Identities=15% Similarity=0.185 Sum_probs=56.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCC-ccCHHHHHHHHH--HHhCCCCCCCCCCCHHHHHHH
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSK-DLRLEKIQEDIG--KKIGLFDDSWKSKSVEEKAVD 186 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~--~~l~~~~~~~~~~~~~~~~~~ 186 (557)
....+++|+|+.|+|||||++.+...... .+.+.+++.-.. ..-.... ..+. ..++. .. ......
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~---~~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl-----~~---~~l~~~ 90 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQ---TKSYHIITIEDPIEYVFKHK-KSIVNQREVGE-----DT---KSFADA 90 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHH---HCCCEEEEEESSCCSCCCCS-SSEEEEEEBTT-----TB---SCHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCC---CCCCEEEEcCCcceeecCCc-ceeeeHHHhCC-----CH---HHHHHH
Confidence 46679999999999999999998776521 112333322110 0000000 0000 00111 01 122455
Q ss_pred HHHHhcCCcEEEEEccCCCccccccccccCCCCCCCCcEEEEeeCChHH
Q 036236 187 IFRSLREKRFVLLLDDIWERVDLTKVGVPLPGPQNTTSKVVFTTRSIDV 235 (557)
Q Consensus 187 l~~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~s~iliTtR~~~v 235 (557)
+...+..++=++++|+..+......+.... ..| .-|++||.....
T Consensus 91 la~aL~~~p~illlDEp~D~~~~~~~l~~~---~~g-~~vl~t~H~~~~ 135 (261)
T 2eyu_A 91 LRAALREDPDVIFVGEMRDLETVETALRAA---ETG-HLVFGTLHTNTA 135 (261)
T ss_dssp HHHHHHHCCSEEEESCCCSHHHHHHHHHHH---HTT-CEEEEEECCSSH
T ss_pred HHHHHhhCCCEEEeCCCCCHHHHHHHHHHH---ccC-CEEEEEeCcchH
Confidence 666666677899999986433332222211 223 567788876543
No 442
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.39 E-value=0.044 Score=48.44 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=22.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..-.|+|+|..|+|||||++.+....
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCC
Confidence 34678999999999999999998764
No 443
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.39 E-value=0.043 Score=55.26 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=24.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
+...+|.|+|++|+||||+|+.+....
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 456899999999999999999998765
No 444
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.39 E-value=0.04 Score=51.57 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=23.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
+...+++|+|+.|.|||||++.++.-.
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 466799999999999999999997764
No 445
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.36 E-value=0.097 Score=47.99 Aligned_cols=37 Identities=19% Similarity=0.320 Sum_probs=28.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEE
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWV 149 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv 149 (557)
....|.|.|+.|+||||+++.+.+... ..++..+...
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~--~~~~~~~~~~ 62 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ--QNGIDHITRT 62 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH--HTTCCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCCeeeee
Confidence 457899999999999999999998873 2345534333
No 446
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.36 E-value=0.043 Score=50.78 Aligned_cols=27 Identities=26% Similarity=0.501 Sum_probs=23.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
+...+++|+|+.|.|||||++.++.-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456799999999999999999987654
No 447
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.30 E-value=0.046 Score=51.31 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=23.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhh
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNK 135 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~ 135 (557)
....+++|+|+.|.|||||++.++.-
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46679999999999999999999875
No 448
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.30 E-value=0.046 Score=52.32 Aligned_cols=24 Identities=33% Similarity=0.284 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 113 GIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 113 ~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
.+|.|.|++|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC
Confidence 579999999999999999998753
No 449
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.29 E-value=0.053 Score=46.53 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 036236 113 GIIGLYGMGGVGKTTLLTHINNK 135 (557)
Q Consensus 113 ~vv~I~G~~GiGKTtLa~~v~~~ 135 (557)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999764
No 450
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.25 E-value=0.04 Score=51.90 Aligned_cols=26 Identities=31% Similarity=0.528 Sum_probs=23.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...+++|+|+.|+|||||++.+..-.
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 56789999999999999999987654
No 451
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=93.23 E-value=0.096 Score=51.16 Aligned_cols=47 Identities=21% Similarity=0.227 Sum_probs=32.9
Q ss_pred cCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccC
Q 036236 109 EESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLR 156 (557)
Q Consensus 109 ~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~ 156 (557)
.+..+++.+.|.||+||||+|..++...... ..-..++-|+.....+
T Consensus 15 ~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~-~~g~~vllid~D~~~~ 61 (348)
T 3io3_A 15 HDSLKWIFVGGKGGVGKTTTSSSVAVQLALA-QPNEQFLLISTDPAHN 61 (348)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHHHHH-CTTSCEEEEECCSSCH
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHh-cCCCeEEEEECCCCCC
Confidence 4567899999999999999999998877300 2223466666654433
No 452
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.22 E-value=0.11 Score=46.33 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 036236 114 IIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 114 vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
.|+|-|.-|+||||.++.+++.+
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L 24 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47889999999999999999988
No 453
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.21 E-value=0.044 Score=51.04 Aligned_cols=27 Identities=44% Similarity=0.560 Sum_probs=23.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
....+++|+|+.|.|||||.+.++.-.
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 456799999999999999999997764
No 454
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.20 E-value=0.045 Score=51.21 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=23.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
+...+++|+|+.|.|||||++.+..-.
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 456799999999999999999997764
No 455
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.20 E-value=0.048 Score=50.70 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=22.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhh
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNK 135 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~ 135 (557)
...+++|+|+.|.|||||++.++.-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5578999999999999999999874
No 456
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.19 E-value=0.13 Score=46.35 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=23.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
....|.|.|+.|+||||+++.+.+.+
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999999887
No 457
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.17 E-value=0.039 Score=48.39 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 036236 114 IIGLYGMGGVGKTTLLTHINNK 135 (557)
Q Consensus 114 vv~I~G~~GiGKTtLa~~v~~~ 135 (557)
-|+|+|.+|+|||||+..+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999998764
No 458
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.17 E-value=0.044 Score=50.60 Aligned_cols=26 Identities=38% Similarity=0.489 Sum_probs=23.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...+++|+|+.|.|||||.+.++.-.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 55789999999999999999997765
No 459
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.16 E-value=0.054 Score=53.09 Aligned_cols=26 Identities=31% Similarity=0.521 Sum_probs=23.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...+++|+|+.|+||||+++.++...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 45799999999999999999998876
No 460
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.15 E-value=0.043 Score=51.46 Aligned_cols=27 Identities=30% Similarity=0.506 Sum_probs=23.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
....+++|+|+.|.|||||++.+..-.
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 356799999999999999999998765
No 461
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.13 E-value=0.12 Score=46.62 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=22.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 112 VGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 112 ~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...|.|.|+.|+||||+++.+.+.+
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999887
No 462
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.13 E-value=0.045 Score=50.14 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=23.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...+++|+|+.|.|||||.+.++.-.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56789999999999999999998765
No 463
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.13 E-value=0.044 Score=51.15 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=23.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...+++|+|+.|.|||||.+.++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56799999999999999999997765
No 464
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.12 E-value=0.056 Score=49.86 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=23.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 112 VGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 112 ~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...|+|.|..|+||||+++.+.+..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999886
No 465
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.11 E-value=0.038 Score=49.98 Aligned_cols=26 Identities=35% Similarity=0.588 Sum_probs=22.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...+++|+|+.|.|||||++.++.-.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 55689999999999999999997764
No 466
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.10 E-value=0.049 Score=48.46 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 112 VGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 112 ~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...|+|+|..|+|||||.+.+....
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 4568999999999999999998763
No 467
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.08 E-value=0.046 Score=50.69 Aligned_cols=26 Identities=35% Similarity=0.563 Sum_probs=23.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...+++|+|+.|.|||||++.++.-.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 55789999999999999999997765
No 468
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.08 E-value=0.058 Score=45.78 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 113 GIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 113 ~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
.-|+|+|.+|+|||||+..+....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999988763
No 469
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=93.06 E-value=0.069 Score=53.32 Aligned_cols=78 Identities=12% Similarity=0.172 Sum_probs=63.3
Q ss_pred CCCCCccEEEcccccccccccchHhhcCCCCcEEEeecCCCCccCC-ccccCCCCCCeeeccCCCCcccCh-HHHhHhhh
Q 036236 470 PTCPHLLTLFLDFNQELEMIADGFFQFMPSLKVLKISNCGNIFQLP-VGMSKLGSLELLDISHTFIKELPE-ELKKLLEA 547 (557)
Q Consensus 470 ~~~~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~Ls~~~~~~~lP-~~i~~L~~L~~L~l~~n~l~~lP~-~i~~L~~L 547 (557)
..|.+|..+.+..+ +..++...|.++.+|+.++|.++ ++.++ ..+.++.+|+.+++..+ ++.++. .+.++.+|
T Consensus 294 ~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 294 YGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL 368 (394)
T ss_dssp TTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred cccccccccccccc--cceechhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence 67888998888765 77888888999999999999754 77784 47889999999999776 888865 47788888
Q ss_pred hhcCC
Q 036236 548 IQRAP 552 (557)
Q Consensus 548 ~~L~~ 552 (557)
+.+.+
T Consensus 369 ~~i~l 373 (394)
T 4fs7_A 369 KKVEL 373 (394)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 87655
No 470
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.05 E-value=0.1 Score=51.43 Aligned_cols=27 Identities=22% Similarity=0.050 Sum_probs=24.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
+...+++|+|++|+|||||++.+....
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 566799999999999999999998764
No 471
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.05 E-value=0.057 Score=49.65 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=23.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...+|+|.|+.|+||||+++.+....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999998875
No 472
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.02 E-value=0.057 Score=50.43 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=23.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...++.+.|.||+||||++..++...
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 56788999999999999999998776
No 473
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.97 E-value=0.05 Score=51.04 Aligned_cols=27 Identities=26% Similarity=0.304 Sum_probs=23.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
....+++|+|+.|.|||||++.++.-.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 356799999999999999999987654
No 474
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=92.91 E-value=0.098 Score=47.27 Aligned_cols=38 Identities=26% Similarity=0.143 Sum_probs=26.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCC
Q 036236 113 GIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSK 153 (557)
Q Consensus 113 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 153 (557)
-.|.+.|.||+||||+|..++.... ...++ +..+.+..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~--~~G~~-V~v~d~D~ 44 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQL--RQGVR-VMAGVVET 44 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHH--HTTCC-EEEEECCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHH--HCCCC-EEEEEeCC
Confidence 3588899999999999999888863 22333 44444544
No 475
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.91 E-value=0.052 Score=51.34 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=23.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...++.|+|++|+|||||+..++...
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56799999999999999999988755
No 476
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.83 E-value=0.077 Score=46.72 Aligned_cols=26 Identities=31% Similarity=0.255 Sum_probs=22.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
....|+|+|.+|+|||||+..+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999988764
No 477
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.83 E-value=0.052 Score=50.34 Aligned_cols=26 Identities=35% Similarity=0.496 Sum_probs=23.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...+++|+|+.|.|||||.+.++.-.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 55689999999999999999998765
No 478
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.80 E-value=0.048 Score=49.94 Aligned_cols=26 Identities=31% Similarity=0.293 Sum_probs=22.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhh
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNK 135 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~ 135 (557)
....+|+|.|+.|+||||+++.+...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 35679999999999999999998765
No 479
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.79 E-value=0.058 Score=45.86 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 036236 114 IIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 114 vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
-|+|+|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48899999999999999997664
No 480
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.78 E-value=0.073 Score=46.62 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhh
Q 036236 112 VGIIGLYGMGGVGKTTLLTHINNK 135 (557)
Q Consensus 112 ~~vv~I~G~~GiGKTtLa~~v~~~ 135 (557)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999874
No 481
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.72 E-value=0.055 Score=50.36 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=23.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...+++|+|+.|.|||||.+.++.-.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 55689999999999999999998765
No 482
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.65 E-value=0.079 Score=53.41 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 112 VGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 112 ~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..+|.|+|.+|+||||++..++...
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999988876
No 483
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.64 E-value=0.063 Score=45.88 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=21.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..--|+|+|.+|+|||||+..+....
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCC
Confidence 34568899999999999999998754
No 484
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=92.63 E-value=0.13 Score=55.06 Aligned_cols=64 Identities=20% Similarity=0.243 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCHHHHHHHHHH
Q 036236 96 QSQLEQVWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRLEKIQEDIGK 166 (557)
Q Consensus 96 ~~~~~~l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 166 (557)
+.+.+.+...|. ...+..|+||+|.|||+.+.++....... ...+.++...+..+..+...+..
T Consensus 192 ~~Q~~AV~~al~---~~~~~lI~GPPGTGKT~ti~~~I~~l~~~----~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 192 TSQKEAVLFALS---QKELAIIHGPPGTGKTTTVVEIILQAVKQ----GLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp HHHHHHHHHHHH---CSSEEEEECCTTSCHHHHHHHHHHHHHHT----TCCEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc---CCCceEEECCCCCCHHHHHHHHHHHHHhC----CCeEEEEcCchHHHHHHHHHHHh
Confidence 455666777776 33477899999999997766655544221 23567777766666777666643
No 485
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.62 E-value=0.067 Score=52.89 Aligned_cols=24 Identities=38% Similarity=0.631 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 113 GIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 113 ~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
.+|+|.|+.|+||||||..++..+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 589999999999999999999876
No 486
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.62 E-value=0.057 Score=51.03 Aligned_cols=26 Identities=42% Similarity=0.491 Sum_probs=23.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...+++|+|+.|.|||||++.++.-.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 56789999999999999999998765
No 487
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=92.61 E-value=0.12 Score=48.48 Aligned_cols=38 Identities=21% Similarity=0.385 Sum_probs=28.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCC
Q 036236 113 GIIGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSK 153 (557)
Q Consensus 113 ~vv~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 153 (557)
++|+|.|-||+||||+|..++..+.. . -..++-|+...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~-~--G~~VlliD~D~ 39 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHA-M--GKTIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHT-T--TCCEEEEEECT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHH-C--CCcEEEEcCCC
Confidence 57888999999999999999888732 2 22466666543
No 488
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=92.61 E-value=0.097 Score=53.73 Aligned_cols=44 Identities=11% Similarity=-0.045 Sum_probs=32.9
Q ss_pred cchhHHHHHHHHHHhc-cCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 93 VGLQSQLEQVWRCLVV-EESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 93 vGr~~~~~~l~~~L~~-~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
+.|.+..+.+.+.... .....+|.+.|++|+||||+|+.+...+
T Consensus 375 f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 375 FSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTF 419 (511)
T ss_dssp TSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred ccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHH
Confidence 4455555556555421 2355789999999999999999999998
No 489
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=92.50 E-value=0.075 Score=46.75 Aligned_cols=25 Identities=24% Similarity=0.113 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 112 VGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 112 ~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..++.|+|+.|+||||++..++.+.
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999997776665
No 490
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.47 E-value=0.062 Score=46.32 Aligned_cols=25 Identities=36% Similarity=0.389 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 112 VGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 112 ~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
.--|+|+|.+|+|||||+..+....
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEEECCCCccHHHHHHHHhcCC
Confidence 4568999999999999999987653
No 491
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.44 E-value=0.07 Score=50.15 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 036236 114 IIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 114 vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
.++|+|+.|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998765
No 492
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=92.43 E-value=0.088 Score=46.79 Aligned_cols=34 Identities=29% Similarity=0.472 Sum_probs=24.1
Q ss_pred HHHHHhccCCeeEEEEEcCCCCcHHHHHHHHHhh
Q 036236 102 VWRCLVVEESVGIIGLYGMGGVGKTTLLTHINNK 135 (557)
Q Consensus 102 l~~~L~~~~~~~vv~I~G~~GiGKTtLa~~v~~~ 135 (557)
+.+.+.-......|+|+|.+|+|||||+..+...
T Consensus 15 ~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 15 VLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHhhccCCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3444422234456889999999999999998653
No 493
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.37 E-value=0.088 Score=45.50 Aligned_cols=27 Identities=33% Similarity=0.397 Sum_probs=23.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
.....|+|+|.+|+|||||+..+....
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 456788999999999999999987653
No 494
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=92.36 E-value=0.097 Score=52.27 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=23.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 111 SVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 111 ~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
...+++|+|+.|+|||||.+.+....
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Confidence 56699999999999999999998743
No 495
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=92.35 E-value=0.071 Score=46.82 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 113 GIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 113 ~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
--|+|+|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468899999999999999998664
No 496
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.34 E-value=0.22 Score=49.93 Aligned_cols=27 Identities=33% Similarity=0.345 Sum_probs=24.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
....+++|+|+.|.||||+.+.+....
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 566799999999999999999998876
No 497
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.30 E-value=0.055 Score=51.79 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=23.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 110 ESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 110 ~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
....+++|+|+.|.|||||++.+..-.
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 466799999999999999999987654
No 498
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.29 E-value=0.075 Score=45.29 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 112 VGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 112 ~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
..-|+|+|.+|+|||||+..+....
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc
Confidence 3468899999999999999987654
No 499
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=92.26 E-value=0.15 Score=46.95 Aligned_cols=40 Identities=30% Similarity=0.378 Sum_probs=29.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhhcccCCCCcceEEEEEeCCccCH
Q 036236 115 IGLYGMGGVGKTTLLTHINNKFLENPINFDCVIWVVVSKDLRL 157 (557)
Q Consensus 115 v~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 157 (557)
|+|.|-||+||||+|..++..... . -..++-|+.....+.
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~-~--g~~VlliD~D~~~~l 42 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMAS-D--YDKIYAVDGDPDSCL 42 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTT-T--CSCEEEEEECTTSCH
T ss_pred EEEecCCCCCHHHHHHHHHHHHHH-C--CCeEEEEeCCCCcCh
Confidence 666999999999999999998832 2 245666776554443
No 500
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.25 E-value=0.083 Score=47.19 Aligned_cols=28 Identities=29% Similarity=0.273 Sum_probs=21.5
Q ss_pred cCCeeEEEEEcCCCCcHHHHHHHHHhhc
Q 036236 109 EESVGIIGLYGMGGVGKTTLLTHINNKF 136 (557)
Q Consensus 109 ~~~~~vv~I~G~~GiGKTtLa~~v~~~~ 136 (557)
....--|+|+|.+|+|||||+..+....
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 3445678899999999999999987653
Done!