BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036237
         (689 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  985 bits (2546), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/655 (71%), Positives = 553/655 (84%), Gaps = 2/655 (0%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           +E +QLHA S+KT +  H  +SSRLL+LY DP IN+L YARSIFDRI Q  SL+ +N +I
Sbjct: 27  QEVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRI-QRRSLIHWNTII 85

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
           KCYV NQ SH+ + LF +L+  +L PDNFTLPCVIKG ARLG ++EGKQIHGL  K+GFG
Sbjct: 86  KCYVENQFSHDGIVLFHELVHEYL-PDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFG 144

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
            D FV  SLV+MY+K GEID  R+VFD M DKD+V WN LIDGY + GE+++A++LF+EM
Sbjct: 145 SDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEEM 204

Query: 215 PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFD 274
           P+RD FSWT LVDG SKCGKVE AR++F +MP RNLVSWNAMINGYMK+GD DSA ELF 
Sbjct: 205 PERDAFSWTVLVDGLSKCGKVESARKLFDQMPCRNLVSWNAMINGYMKSGDFDSALELFY 264

Query: 275 DMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNK 334
            M I DL+TWN MIAGYELNG+FM+A+++   ML     P+ ATLVS LSAV+GLAVL K
Sbjct: 265 QMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGK 324

Query: 335 GRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGM 394
           GRW+HSY+ KNGF +DG+LGT LI+MY+KCG IESALTVFRAI KKKVGHWTA+IVGLG+
Sbjct: 325 GRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGI 384

Query: 395 HGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIE 454
           HGMA  AL LF +MC+ G+KP AI FIGVLNAC+HAGLV+DGR+YF+MM+N+Y IEPT+E
Sbjct: 385 HGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLE 444

Query: 455 HYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKV 514
           HYGCLVDILCR G+LEEAK+TIE+MP+ PN VIWMSLL G+RNHG  DIGEYAA  +I+V
Sbjct: 445 HYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIEV 504

Query: 515 APDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKS 574
           AP+TIGCY++LSN+YAA+G W+KVS VREMM KRGFRKDPG SS+EH+G LHEF+VGD S
Sbjct: 505 APETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCSSVEHKGTLHEFIVGDIS 564

Query: 575 HPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINV 634
           HPQT EI++K+SEM+ KLK  GHVPDTTQVLLCIE +KEKEAELENHSERLAIAFGLINV
Sbjct: 565 HPQTKEIYAKMSEMKEKLKCVGHVPDTTQVLLCIEGEKEKEAELENHSERLAIAFGLINV 624

Query: 635 KSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           K   PIRI+KNLRVCNDCHSVTKLLS IY+REIIVRDN RFHHFKNGSCSC D+W
Sbjct: 625 KPGIPIRIMKNLRVCNDCHSVTKLLSKIYSREIIVRDNCRFHHFKNGSCSCMDYW 679


>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 681

 Score =  971 bits (2511), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/677 (68%), Positives = 560/677 (82%), Gaps = 3/677 (0%)

Query: 13  HALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLH 72
           H+LQ  LP  LH+  L+   T +E  QLHALS+KT  + H  +SSRLL+LY DP INNL 
Sbjct: 8   HSLQPFLPPNLHFP-LQNCGTEREANQLHALSIKTASLNHPSVSSRLLALYADPRINNLQ 66

Query: 73  YARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGA 132
           YA S+FD I Q P+LV +NLLIKCY+ NQRS++A+ LFC LL  F+ PD+FTLPCV+KG 
Sbjct: 67  YAHSLFDWI-QEPTLVSWNLLIKCYIENQRSNDAIALFCKLLCDFV-PDSFTLPCVLKGC 124

Query: 133 ARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWN 192
           ARLGA++EGKQIHGLV K+GFG DKFVLSSLVSMY+K GEI+L R+VFD M+DKD+VSWN
Sbjct: 125 ARLGALQEGKQIHGLVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWN 184

Query: 193 CLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS 252
            LIDGY + GE+E+A+++F+EMP++D FSWT L+DG SK GK+E AR++F RMP RN VS
Sbjct: 185 SLIDGYARCGEIELALEMFEEMPEKDSFSWTILIDGLSKSGKLEAARDVFDRMPIRNSVS 244

Query: 253 WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDV 312
           WNAMINGYMKAGD ++A ELFD M  R L+TWNSMI GYE N +F +AL+L E ML  D+
Sbjct: 245 WNAMINGYMKAGDSNTAKELFDQMPERSLVTWNSMITGYERNKQFTKALKLFEVMLREDI 304

Query: 313 LPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALT 372
            PN  T++ A+SA +G+  L  GRW+HSYIVK+GF  DGVLGTLLI+MYSKCGS++SAL 
Sbjct: 305 SPNYTTILGAVSAASGMVSLGTGRWVHSYIVKSGFKTDGVLGTLLIEMYSKCGSVKSALR 364

Query: 373 VFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGL 432
           VFR+I KKK+GHWT++IVGLGMHG+  Q L+LF++MCR G+KP AITFIGVLNACSHAG 
Sbjct: 365 VFRSIPKKKLGHWTSVIVGLGMHGLVEQTLELFDEMCRTGLKPHAITFIGVLNACSHAGF 424

Query: 433 VNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLL 492
             D  RYF MM  DYGI+P+IEHYGCL+D+LCR G+LEEAK TIE MP++ N VIW SLL
Sbjct: 425 AEDAHRYFKMMTYDYGIKPSIEHYGCLIDVLCRAGHLEEAKDTIERMPIKANKVIWTSLL 484

Query: 493 SGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRK 552
           SG+R HGN  +GEYAA +LI +APDT GCYV+LSN+YAAAG W+KV +VREMMKK+G +K
Sbjct: 485 SGSRKHGNIRMGEYAAQHLIDLAPDTTGCYVILSNMYAAAGLWEKVRQVREMMKKKGMKK 544

Query: 553 DPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQK 612
           DPG SSIEH+G +HEF+VGDKSHPQT+EI+ KL EM+ KL  AGH+PDTTQVLLC+E+  
Sbjct: 545 DPGCSSIEHQGSIHEFIVGDKSHPQTEEIYIKLCEMKKKLNVAGHIPDTTQVLLCLEEDN 604

Query: 613 EKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDN 672
           EKEAELE HSERLAIAFGL+N+K  SPIRI+KNLR+CNDCH+VTKLLS IYNREII+RD 
Sbjct: 605 EKEAELETHSERLAIAFGLLNIKHGSPIRIIKNLRICNDCHAVTKLLSHIYNREIIIRDG 664

Query: 673 SRFHHFKNGSCSCKDFW 689
           SRFHHFK+GSCSCKDFW
Sbjct: 665 SRFHHFKSGSCSCKDFW 681


>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
          Length = 631

 Score =  896 bits (2316), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/680 (64%), Positives = 524/680 (77%), Gaps = 53/680 (7%)

Query: 10  SPIHALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHIN 69
           +P H+LQQ+LP  LH ++ +  S  +E +QLHA S+KT +  H  +SSRLL+LY DP IN
Sbjct: 5   TPFHSLQQYLPHNLHLSLFQTCSAPQEVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKIN 64

Query: 70  NLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVI 129
           +L YARSIFDRI Q  SL+ +N +IKCYV NQ SH+ + LF +L+  +L PDNFTLPCVI
Sbjct: 65  DLGYARSIFDRI-QRRSLIHWNTIIKCYVENQFSHDGIVLFHELVHEYL-PDNFTLPCVI 122

Query: 130 KGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLV 189
           KG ARLG ++EGKQIHGL  K+GFG D FV  SLV+MY+K                    
Sbjct: 123 KGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKC------------------- 163

Query: 190 SWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRN 249
                       GE++ A K+FD M D+D+  W  L+DG                    N
Sbjct: 164 ------------GEIDCARKVFDGMIDKDVVLWNSLIDG--------------------N 191

Query: 250 LVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLI 309
           LVSWNAMINGYMK+GD DSA ELF  M I DL+TWN MIAGYELNG+FM+A+++   ML 
Sbjct: 192 LVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLK 251

Query: 310 GDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIES 369
               P+ ATLVS LSAV+GLAVL KGRW+HSY+ KNGF +DG+LGT LI+MY+KCG IES
Sbjct: 252 LGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIES 311

Query: 370 ALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSH 429
           ALTVFRAI KKKVGHWTA+IVGLG+HGMA  AL LF +MC+ G+KP AI FIGVLNAC+H
Sbjct: 312 ALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNH 371

Query: 430 AGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWM 489
           AGLV+DGR+YF+MM+N+Y IEPT+EHYGCLVDILCR G+LEEAK+TIE+MP+ PN VIWM
Sbjct: 372 AGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWM 431

Query: 490 SLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRG 549
           SLL G+RNHG  DIGEYAA  +I+VAP+TIGCY++LSN+YAA+G W+KVS VREMM KRG
Sbjct: 432 SLLGGSRNHGKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRG 491

Query: 550 FRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIE 609
           FRKDPG SS+EH+G LHEF+VGD SHPQT EI++K+SEM+ KLK  GHVPDTTQVLLCIE
Sbjct: 492 FRKDPGCSSVEHKGTLHEFIVGDISHPQTKEIYAKMSEMKEKLKCVGHVPDTTQVLLCIE 551

Query: 610 DQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIV 669
            +KEKEAELENHSERLAIAFGLINVK   PIRI+KNLRVCNDCHSVTKLLS IY+REIIV
Sbjct: 552 GEKEKEAELENHSERLAIAFGLINVKPGIPIRIMKNLRVCNDCHSVTKLLSKIYSREIIV 611

Query: 670 RDNSRFHHFKNGSCSCKDFW 689
           RDN RFHHFKNGSCSC D+W
Sbjct: 612 RDNCRFHHFKNGSCSCMDYW 631


>gi|255581780|ref|XP_002531691.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528667|gb|EEF30682.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 434

 Score =  609 bits (1571), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 299/424 (70%), Positives = 351/424 (82%), Gaps = 3/424 (0%)

Query: 20  PSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFD 79
           PS LH+++LK S T KET+QLHALSVKTN   H  ISS LLSLY +P INNL Y  SIF+
Sbjct: 8   PS-LHFSLLKTSKTDKETKQLHALSVKTNTFSHPSISSCLLSLYAEPKINNLEYVLSIFN 66

Query: 80  RILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIK 139
           +I Q P+LVLYN+LIKCY+ NQ SH+A+TLF  LL  F  PD FTLPCVIKG ARL A K
Sbjct: 67  KI-QEPALVLYNILIKCYIQNQLSHDAITLFSQLLHEFN-PDGFTLPCVIKGCARLHATK 124

Query: 140 EGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYV 199
           EGKQIHGLV KLGFG +KFV SSLV+MY+K  +ID  ++VF +MDDKDLVSWN LIDGYV
Sbjct: 125 EGKQIHGLVLKLGFGLNKFVSSSLVNMYSKCKDIDSAKKVFLSMDDKDLVSWNSLIDGYV 184

Query: 200 KKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMING 259
           K G+VE+ MKLF+EMP+RDLFSWT L+DGFSKCGKV++ARE+F +MP+RNLVSWNAMING
Sbjct: 185 KCGQVELGMKLFEEMPERDLFSWTVLIDGFSKCGKVDVARELFDKMPSRNLVSWNAMING 244

Query: 260 YMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATL 319
           YMKAGD   A ELFD M  ++LI+WNSM+AGY+LN RF EAL+L  TML  D  PN ATL
Sbjct: 245 YMKAGDFVLASELFDKMPEKNLISWNSMVAGYDLNERFKEALDLFLTMLERDFTPNHATL 304

Query: 320 VSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK 379
           VS  SAV+GLA L+ G+WMHSY+VKNGF +DGVL T LI MYSKCG+IESAL+VF+ I+K
Sbjct: 305 VSTFSAVSGLASLSTGKWMHSYMVKNGFQLDGVLATSLINMYSKCGNIESALSVFQLITK 364

Query: 380 KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRY 439
           KK+GHWTA+IVGLGMHGMA  AL+ F++MCR GM+P AITFIGVLNACSHAGLV DGR+Y
Sbjct: 365 KKLGHWTAIIVGLGMHGMADNALEFFHEMCRTGMRPHAITFIGVLNACSHAGLVEDGRKY 424

Query: 440 FNMM 443
           F+MM
Sbjct: 425 FDMM 428



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 92/405 (22%), Positives = 170/405 (41%), Gaps = 83/405 (20%)

Query: 139 KEGKQIHGLVFKLGFGFDKFVLSSLVSMYA--KFGEIDLGRRVFDAMDDKDLVSWNCLID 196
           KE KQ+H L  K        + S L+S+YA  K   ++    +F+ + +  LV +N LI 
Sbjct: 22  KETKQLHALSVKTNTFSHPSISSCLLSLYAEPKINNLEYVLSIFNKIQEPALVLYNILIK 81

Query: 197 GYVKKGEVEVAMKLFDEMP---DRDLFSWTCLVDG------------------------- 228
            Y++      A+ LF ++    + D F+  C++ G                         
Sbjct: 82  CYIQNQLSHDAITLFSQLLHEFNPDGFTLPCVIKGCARLHATKEGKQIHGLVLKLGFGLN 141

Query: 229 ----------FSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEI 278
                     +SKC  ++ A+++F  M +++LVSWN++I+GY+K G V+   +LF++M  
Sbjct: 142 KFVSSSLVNMYSKCKDIDSAKKVFLSMDDKDLVSWNSLIDGYVKCGQVELGMKLFEEMPE 201

Query: 279 RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWM 338
           RDL +W  +I G+   G+   A EL + M   +++  +A                     
Sbjct: 202 RDLFSWTVLIDGFSKCGKVDVARELFDKMPSRNLVSWNA--------------------- 240

Query: 339 HSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMA 398
                             +I  Y K G    A  +F  + +K +  W +M+ G  ++   
Sbjct: 241 ------------------MINGYMKAGDFVLASELFDKMPEKNLISWNSMVAGYDLNERF 282

Query: 399 TQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMI-NDYGIEPTIEHYG 457
            +ALDLF  M      P   T +   +A S    ++ G+   + M+ N + ++  +    
Sbjct: 283 KEALDLFLTMLERDFTPNHATLVSTFSAVSGLASLSTGKWMHSYMVKNGFQLDGVLA--T 340

Query: 458 CLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKD 502
            L+++  + G +E A S  + +  +     W +++ G   HG  D
Sbjct: 341 SLINMYSKCGNIESALSVFQ-LITKKKLGHWTAIIVGLGMHGMAD 384


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  587 bits (1513), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 302/699 (43%), Positives = 426/699 (60%), Gaps = 42/699 (6%)

Query: 32  STHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYN 91
           S  K+ +Q+HA  ++T L +    +SRL++        +L YA+ +FD+I  HP+L  +N
Sbjct: 46  SETKQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQI-PHPNLYTWN 104

Query: 92  LLIKCYVFNQRSHEALTLFCDLLDRFL-LPDNFTLPCVIKGAARLGAIKEGKQIHGLVFK 150
            LI+ Y  +   H++L +F  +L +    PD FT P +IK A+ L  +  GK  HG+V K
Sbjct: 105 TLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIK 164

Query: 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
           +  G D F+L+SL+  YAK GE+ LG RVF  +  +D+VSWN +I  +V+ G  E A++L
Sbjct: 165 VLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALEL 224

Query: 211 FDEM----------------------PDRDLFSWT-----------------CLVDGFSK 231
           F EM                       D +   W                   ++D ++K
Sbjct: 225 FQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTK 284

Query: 232 CGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGY 291
           CG VE A+ +F +MP +++VSW  M+ GY K G+ D+A  +FD M  +D+  WN++I+ Y
Sbjct: 285 CGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAY 344

Query: 292 ELNGRFMEALELL-ETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVD 350
           E  G+  EALEL  E  L     P++ TLVS LSA A L  ++ G W+H YI K G  ++
Sbjct: 345 EQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQGMKLN 404

Query: 351 GVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCR 410
             L T LI MY KCG ++ AL VF ++ +K V  W+AMI GL MHG    A+ LF+KM  
Sbjct: 405 CHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQE 464

Query: 411 MGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLE 470
             +KP A+TF  +L ACSH GLV +GR +FN M   YG+ P ++HY C+VDIL R G LE
Sbjct: 465 DKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLE 524

Query: 471 EAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYA 530
           EA   IE MPM P   +W +LL     H N  + E A + LI++ P   G YV+LSNIYA
Sbjct: 525 EAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIYA 584

Query: 531 AAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRN 590
            AG+WD+VS +R++M+  G +K+PG SSIE  G++HEF+VGD SHP   +I++KL E+  
Sbjct: 585 KAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPSAKKIYAKLDEIVA 644

Query: 591 KLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCN 650
           +L+  G+VP+ + +L  +E++  KE  L  HSE+LAIAFGLI+     PIRIVKNLRVC 
Sbjct: 645 RLETIGYVPNKSHLLQLVEEEDVKEQALFLHSEKLAIAFGLISTGQSQPIRIVKNLRVCG 704

Query: 651 DCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           DCHSV KL+S +Y+REI++RD  RFHHF+ G CSC D+W
Sbjct: 705 DCHSVAKLVSKLYDREILLRDRYRFHHFREGHCSCMDYW 743


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  581 bits (1497), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 298/693 (43%), Positives = 420/693 (60%), Gaps = 51/693 (7%)

Query: 2   QTQTLQHSSPIHALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLS 61
           +T  L H + +H L     + LH             +Q HAL ++T  +  S I+  L+ 
Sbjct: 26  ETSKLSHKAILHLLNTQCTTSLH-----------HLKQAHALILRTGHLQDSYIAGSLVK 74

Query: 62  LYVDPHIN---NLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFL 118
            Y +   N   +   +  +FD  ++ P++ L+N +IK  + N    +A+ L+ +++    
Sbjct: 75  SYANVSTNRYLSFESSLRVFD-FVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMMVAHF 133

Query: 119 LPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRR 178
            P+ +T P V+K  +  G + EG Q+H  + K G G D  +LSS + MYA FG +   RR
Sbjct: 134 RPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARR 193

Query: 179 VFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIA 238
           + D                  K GEV             D   W  ++DG+ + G+VE A
Sbjct: 194 ILDD-----------------KGGEV-------------DAVCWNAMIDGYLRFGEVEAA 223

Query: 239 REIFYRMPNRNLVS-WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRF 297
           RE+F  MP+R+++S WNAMI+G+ + G V+ A E FD+M+ RD I+W++MI GY   G F
Sbjct: 224 RELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCF 283

Query: 298 MEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLL 357
           MEALE+   M    + P    L S LSA A L  L++GRW+H+Y  +N   +DGVLGT L
Sbjct: 284 MEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSL 343

Query: 358 IQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA 417
           + MY+KCG I+ A  VF  +S K+V  W AMI GL MHG A  A+DLF+KM    + P  
Sbjct: 344 VDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM---DINPNE 400

Query: 418 ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIE 477
           ITF+GVLNAC+H GLV  G   FN M  +YG+EP IEHYGC+VD+L R G L EA+  + 
Sbjct: 401 ITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVS 460

Query: 478 SMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDK 537
           S+P  P   +W +LL   R HGN ++GE     L+++ P   G Y +LSNIYA AG+W++
Sbjct: 461 SIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEE 520

Query: 538 VSEVREMMKKRGFRKDPGSSSIE-HRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAG 596
           V EVR++MK+RG +  PG+S I+  RG +H+F++GD SHPQ  +I+  L +++ +L+  G
Sbjct: 521 VGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEG 580

Query: 597 HVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVT 656
           + PD +QVL  I D++EKE  +  HSE+LAI FGLIN    + IRIVKNLRVC DCHS T
Sbjct: 581 YEPDPSQVLFDI-DEEEKETAVWQHSEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSAT 639

Query: 657 KLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           KL+S +YNREIIVRD  R+HHF+NG+CSCKDFW
Sbjct: 640 KLISQVYNREIIVRDRIRYHHFRNGACSCKDFW 672


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  578 bits (1491), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 290/671 (43%), Positives = 423/671 (63%), Gaps = 10/671 (1%)

Query: 27  ILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPS 86
           IL+   T ++  ++HA  +KT L+    ++  LL         ++ YA SIF R +  P 
Sbjct: 30  ILEQCKTIRDLNEIHAHLIKTRLLLKPKVAENLLESAAILLPTSMDYAVSIF-RQIDEPD 88

Query: 87  LVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHG 146
              YN++I+ +   Q  HEA+ LF ++ +  + PD FT PC++K  +RL A+ EG+QIH 
Sbjct: 89  SPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQALSEGEQIHA 148

Query: 147 LVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEV 206
           L+ K GFG   FV ++L+ MYA  GE+++ RRVFD M ++++ +WN +  GY K G  E 
Sbjct: 149 LIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEE 208

Query: 207 AMKLFDEMPDRDL-FSWTCLVDGFSKCGKVE-------IAREIFYRMPNRNLVSWNAMIN 258
            +KLF EM + D+ F    LV   + CG++        I R +  +    N     ++++
Sbjct: 209 VVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTLITSLVD 268

Query: 259 GYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDAT 318
            Y K G VD+A  LFD M+ RD++ W++MI+GY    R  EAL+L   M   ++ PN+ T
Sbjct: 269 MYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEIT 328

Query: 319 LVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS 378
           +VS LS+ A L  L  G+W+H +I K    +   LGT L+  Y+KCGS+ES++ VF  + 
Sbjct: 329 MVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMP 388

Query: 379 KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR 438
            K V  WT +I GL  +G   +AL+ F  M    ++P  +TFIGVL+ACSHAGLV++GR 
Sbjct: 389 VKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRD 448

Query: 439 YFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNH 498
            F  M  D+GIEP IEHYGC+VDIL R G +EEA   I++MP++PN VIW +LL+  + H
Sbjct: 449 LFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLASCKVH 508

Query: 499 GNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSS 558
            N +IGE +   LI + P   G Y++LSNIYA+ G+W+   +VR  MK++G +K PG S 
Sbjct: 509 KNVEIGEESLKQLIILEPTHSGDYILLSNIYASVGRWEDALKVRGEMKEKGIKKTPGCSL 568

Query: 559 IEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAEL 618
           IE  GV+HEF   D  H Q++EI++ + +M  ++K+AG+VP+T +  L  E+  +KE+ +
Sbjct: 569 IELDGVIHEFFAEDNVHSQSEEIYNAIEDMMKQIKSAGYVPNTAEARLDAEED-DKESSV 627

Query: 619 ENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHF 678
            +HSE+LAIAFGLI     + IRI KNLRVC DCH+ TKL+S ++NREI+VRD +RFHHF
Sbjct: 628 SHHSEKLAIAFGLIKSPPGTTIRITKNLRVCTDCHNATKLVSKVFNREIVVRDRTRFHHF 687

Query: 679 KNGSCSCKDFW 689
           K GSCSC D+W
Sbjct: 688 KEGSCSCNDYW 698


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  578 bits (1491), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 302/721 (41%), Positives = 445/721 (61%), Gaps = 48/721 (6%)

Query: 11  PIHALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYV-DPHIN 69
           P  +L+ H PS    ++L    T +  + +HA  +KT L   +   S+LL L V  PH +
Sbjct: 27  PYDSLRNH-PS---LSLLHNCKTLQSLRLIHAQMIKTGLHNTNYALSKLLELCVISPHFD 82

Query: 70  NLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVI 129
            L YA S+F+ I Q P+L+++N + + +  +     AL L+  ++   LLP+++T P ++
Sbjct: 83  GLPYAISVFETI-QEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLL 141

Query: 130 KGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLV 189
           K  A+  A KEG+QIHG V KLG+  D FV +SL+S+Y + G ++  R+VFD    +D+V
Sbjct: 142 KSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVV 201

Query: 190 SWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM---- 245
           S+  LI GY  +G +E A KLFDE+P +D+ SW  ++ G+++ G  + A E+F  M    
Sbjct: 202 SYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTN 261

Query: 246 --PN--------------------RNLVSW-------------NAMINGYMKAGDVDSAC 270
             P+                    R + SW             N++++ Y K G++++AC
Sbjct: 262 IRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETAC 321

Query: 271 ELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLA 330
            LF+ +  +D+I+WN++I GY     + EAL L + ML     PND T++S L A A L 
Sbjct: 322 GLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLG 381

Query: 331 VLNKGRWMHSYIVK--NGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAM 388
            ++ GRW+H YI K          L T LI MY+KCG IE+A  VF +I  K +  W AM
Sbjct: 382 AIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAM 441

Query: 389 IVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYG 448
           I G  MHG A  A D+F++M ++G++P  ITF+G+L+ACS +G+++ GR  F  M  DY 
Sbjct: 442 IFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQDYK 501

Query: 449 IEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAA 508
           I P +EHYGC++D+L  +G  +EA+  I +M M P+ VIW SLL   +  GN ++GE  A
Sbjct: 502 ITPKLEHYGCMIDLLGHSGLFKEAEEMINNMEMEPDGVIWCSLLKACKIRGNVELGESFA 561

Query: 509 NNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEF 568
            NLIK+ P+  GCYV+LSNIYA AG+W++V+++R ++  +G +K PG SSIE   V+HEF
Sbjct: 562 QNLIKIEPENPGCYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEF 621

Query: 569 VVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIA 628
           ++GDK HP+  EI+  L EM   L+ AG VPDT++VL  +E++  KE  L +HSE+LAIA
Sbjct: 622 IIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEE-WKEGALRHHSEKLAIA 680

Query: 629 FGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDF 688
           FGLI+ K  + + IVKNLRVC +CH  TKL+S IY REII RD +RFHHF++G CSC D+
Sbjct: 681 FGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDY 740

Query: 689 W 689
           W
Sbjct: 741 W 741


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  578 bits (1491), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 298/693 (43%), Positives = 420/693 (60%), Gaps = 51/693 (7%)

Query: 2   QTQTLQHSSPIHALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLS 61
           +T  L H + +H L     + LH             +Q HAL ++T  +  S I+  L+ 
Sbjct: 27  ETSKLSHKAILHLLNTQCTTSLH-----------HLKQAHALILRTGHLQDSYIAGSLVK 75

Query: 62  LYVDPHIN---NLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFL 118
            Y +   N   +   +  +FD  ++ P++ L+N +IK  + N    +A+ L+ +++    
Sbjct: 76  SYANVSTNRYLSFESSLRVFD-FVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMVVAHS 134

Query: 119 LPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRR 178
            P+ +T P V+K  +  G + EG Q+H  + K G G D  +LSS + MYA FG +   RR
Sbjct: 135 RPNKYTYPAVLKACSDSGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARR 194

Query: 179 VFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIA 238
           + D                  K GEV             D   W  ++DG+ + G+VE A
Sbjct: 195 ILDD-----------------KGGEV-------------DAVCWNAMIDGYLRFGEVEAA 224

Query: 239 REIFYRMPNRNLVS-WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRF 297
           RE+F  MP+R+++S WNAMI+G+ + G V+ A E FD+M+ RD I+W++MI GY   G F
Sbjct: 225 RELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCF 284

Query: 298 MEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLL 357
           MEALE+   M    + P    L S LSA A L  L++GRW+H+Y  +N   +DGVLGT L
Sbjct: 285 MEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSL 344

Query: 358 IQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA 417
           + MY+KCG I+ A  VF  +S K+V  W AMI GL MHG A  A+DLF+KM    + P  
Sbjct: 345 VDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM---DIYPNE 401

Query: 418 ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIE 477
           ITF+GVLNAC+H GLV  G   FN M  +YG+EP IEHYGC+VD+L R G L EA+  + 
Sbjct: 402 ITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVS 461

Query: 478 SMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDK 537
           S+P  P   +W +LL   R HGN ++GE     L+++ P   G Y +LSNIYA AG+W++
Sbjct: 462 SIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEE 521

Query: 538 VSEVREMMKKRGFRKDPGSSSIE-HRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAG 596
           V EVR++MK+RG +  PG+S I+  RG +H+F++GD SHPQ  +I+  L +++ +L+  G
Sbjct: 522 VGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEG 581

Query: 597 HVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVT 656
           + PD +QVL  I D++EKE  +  HSE+LAI FGLIN    + IRIVKNLRVC DCHS T
Sbjct: 582 YEPDPSQVLFDI-DEEEKETAVWQHSEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSAT 640

Query: 657 KLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           KL+S +YNREIIVRD  R+HHF+NG+CSCKDFW
Sbjct: 641 KLISQVYNREIIVRDRIRYHHFRNGACSCKDFW 673


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  578 bits (1489), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 306/721 (42%), Positives = 436/721 (60%), Gaps = 45/721 (6%)

Query: 9   SSPIHALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHI 68
           S P + L Q+ PS     +L    + +  +Q+H+  +KT L       S+L+        
Sbjct: 23  SDPPYKLLQNHPS---LTLLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPF 79

Query: 69  NNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCV 128
            NL YA  +F+ I Q P+  ++N +I+    +     A+  +  +L   + P+++T P +
Sbjct: 80  GNLSYALLLFESIEQ-PNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFL 138

Query: 129 IKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDL 188
           +K  A++GA +EGKQIHG V KLG   D FV +SL++MYA+ GE+     VF     +D 
Sbjct: 139 LKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDA 198

Query: 189 VSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR 248
           VS+  LI GY  +G ++ A +LF+E+P RD  SW  ++ G+++ G+ E A   F  M   
Sbjct: 199 VSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRA 258

Query: 249 NLV--------------------------SW-------------NAMINGYMKAGDVDSA 269
           N+                           SW             NA+I+ Y K GD+D A
Sbjct: 259 NVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKA 318

Query: 270 CELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGL 329
            +LF+ +  +D+I+WN MI GY     + EAL L   M   +V PND T VS L A A L
Sbjct: 319 RDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYL 378

Query: 330 AVLNKGRWMHSYIVKNGF-VVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAM 388
             L+ G+W+H+YI K    + +  L T LI MY+KCG+IE+A  VF  +  K +G W AM
Sbjct: 379 GALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAM 438

Query: 389 IVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYG 448
           I GL MHG A  AL+LF +M   G +P  ITF+GVL+ACSHAGLV  GR+ F+ M+ DY 
Sbjct: 439 ISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYD 498

Query: 449 IEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAA 508
           I P ++HYGC++D+L R G  +EA++ +++M M+P+  IW SLL   R HGN ++GE+AA
Sbjct: 499 ISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAA 558

Query: 509 NNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEF 568
            +L ++ P+  G YV+LSNIYA AG+WD V+ +R  +  +G +K PG SSIE   V+HEF
Sbjct: 559 KHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKKVPGCSSIEVDSVVHEF 618

Query: 569 VVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIA 628
           +VGDK H Q+ +I+  L E+   L+ AGHVPDT++VL  + D++ KE  L +HSE+LAIA
Sbjct: 619 LVGDKVHEQSQDIYKMLDEIDQLLEKAGHVPDTSEVLYDM-DEEWKEGSLSHHSEKLAIA 677

Query: 629 FGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDF 688
           FGLI+ K  + IRIVKNLRVC +CHS  KL+S I+NREII RD +RFHHFK+GSCSC D+
Sbjct: 678 FGLISTKPETTIRIVKNLRVCGNCHSAIKLISKIFNREIIARDRNRFHHFKDGSCSCMDY 737

Query: 689 W 689
           W
Sbjct: 738 W 738


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  575 bits (1481), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 285/699 (40%), Positives = 431/699 (61%), Gaps = 42/699 (6%)

Query: 32  STHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYN 91
           S+ K+ +++HA  ++T L +    +S+L +       + L YAR++FD+I Q P+L  +N
Sbjct: 36  SSSKQLKEVHARMLRTGLFFDPFSASKLFTASALSSFSTLDYARNLFDQIPQ-PNLYTWN 94

Query: 92  LLIKCYVFNQRSHEALTLFCDLLDRFL-LPDNFTLPCVIKGAARLGAIKEGKQIHGLVFK 150
            LI+ Y  +    ++  +F DLLD+   LP+ FT P VIK A+ L A + G  +HG+  K
Sbjct: 95  TLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAASELKASRVGTAVHGMAIK 154

Query: 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
           L FG D ++L+SLV  Y   G++ +  R+F  +  KD+VSWN +I  + +    E A++L
Sbjct: 155 LSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALEL 214

Query: 211 F------DEMP----------------DRDLFSWTC-----------------LVDGFSK 231
           F      + MP                D +   W C                 ++D ++K
Sbjct: 215 FLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTK 274

Query: 232 CGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGY 291
           CG V+ A+++F  MP R++ SW  M++GY K GD D+A  +F+ M ++++  WN +I+ Y
Sbjct: 275 CGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAY 334

Query: 292 ELNGRFMEALELLETMLIGDVL-PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVD 350
           E NG+  EAL +   + +  +  P++ TLVS LSA A L  ++ G W+H YI + G V++
Sbjct: 335 EQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKREGIVLN 394

Query: 351 GVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCR 410
             L + L+ MY+KCGS+E AL VF ++ ++ V  W+AMI GLGMHG    A+DLF +M  
Sbjct: 395 CHLISSLVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIAGLGMHGRGKAAIDLFFEMQE 454

Query: 411 MGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLE 470
             +KP ++TF  VL ACSHAGLV++GR +F+ M   YG+ P ++HY C+VDIL R G+LE
Sbjct: 455 AKVKPNSVTFTNVLCACSHAGLVDEGRVFFHEMEPVYGVVPEMKHYACMVDILGRAGFLE 514

Query: 471 EAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYA 530
           EA   I  M   P+  +W +LL     H N ++GE A++ L+K+ P   G  V+LSNIYA
Sbjct: 515 EAMELINEMSTTPSASVWGALLGACSLHMNVELGELASDQLLKLEPRNHGAIVLLSNIYA 574

Query: 531 AAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRN 590
             G+W+KVSE+R++M+    +K+PG SSIE  G +HEF+VGD +HP +  I+SKL E+  
Sbjct: 575 KTGRWEKVSELRKLMRDTELKKEPGCSSIEANGNVHEFLVGDNTHPLSSNIYSKLEEIAT 634

Query: 591 KLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCN 650
           KLK+ G+ P+ + +L  IE+   KE  L  HSE+LAIAFGL+ +    PIR+VKNLR+C 
Sbjct: 635 KLKSVGYEPNKSHLLQLIEEDDLKEQALSLHSEKLAIAFGLVTLAPSQPIRVVKNLRICG 694

Query: 651 DCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           DCH+  KL+S +Y+R+I++RD  RFHHF++G CSC D+W
Sbjct: 695 DCHAFAKLVSRVYDRDILLRDRYRFHHFRDGHCSCMDYW 733


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  575 bits (1481), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 294/701 (41%), Positives = 428/701 (61%), Gaps = 46/701 (6%)

Query: 32  STHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYN 91
           +  K  +QLHA  ++T L +    +++L +       ++L YA  +FD+I   P+L  +N
Sbjct: 41  ANKKHLKQLHAHMLRTGLFFDPPSATKLFTACALSSPSSLDYACKVFDQI-PRPNLYTWN 99

Query: 92  LLIKCYVFNQRSHEALTLFCDLL---DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLV 148
            LI+ +  + +  + L +F  +L    RF  P+++T P VIK A  + ++  G+ IHG+V
Sbjct: 100 TLIRAFASSPKPIQGLLVFIQMLHESQRF--PNSYTFPFVIKAATEVSSLLAGQAIHGMV 157

Query: 149 FKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAM 208
            K  FG D F+ +SL+  Y+  G++D    VF  + +KD+VSWN +I G+V+ G  E A+
Sbjct: 158 MKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEAL 217

Query: 209 KLFDEM------PDR----------------DLFSWTC-----------------LVDGF 229
           +LF  M      P+R                +   W C                 ++D +
Sbjct: 218 QLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDINLILSNAMLDMY 277

Query: 230 SKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIA 289
            KCG +E AR +F +M  +++VSW  MI+GY K GD D+A  +FD M   D+  WN++I+
Sbjct: 278 VKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDITAWNALIS 337

Query: 290 GYELNGRFMEALELL-ETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFV 348
            Y+ NG+  EAL +  E  L  +  PN+ TL S L+A A L  ++ G W+H YI K G  
Sbjct: 338 SYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIK 397

Query: 349 VDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKM 408
           ++  + T LI MYSKCG +E AL VF ++ ++ V  W+AMI GL MHG    A+DLF+KM
Sbjct: 398 LNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAMHGHGRAAIDLFSKM 457

Query: 409 CRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGY 468
               +KP A+TF  +L ACSH+GLV++GR +FN M   YG+ P  +HY C+VDIL R G 
Sbjct: 458 QETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQMRPVYGVVPGSKHYACMVDILGRAGC 517

Query: 469 LEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNI 528
           LEEA   IE MP+ P+  +W +LL   R +GN ++ E A + L++   +  G YV+LSNI
Sbjct: 518 LEEAVELIEKMPIVPSASVWGALLGACRIYGNVELAEMACSRLLETDSNNHGAYVLLSNI 577

Query: 529 YAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEM 588
           YA AG+WD VS +R+ MK  G  K+PG SSIE  G++HEF+VGD SHP + EI+SKL E+
Sbjct: 578 YAKAGKWDCVSRLRQHMKVSGLEKEPGCSSIEVNGIIHEFLVGDNSHPLSTEIYSKLDEI 637

Query: 589 RNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRV 648
             ++K+ G+V D + +L  +E++  KE  L  HSE+LAIA+GLI ++   PIRIVKNLRV
Sbjct: 638 VARIKSTGYVSDESHLLQFVEEEYMKEHALNLHSEKLAIAYGLIRMEPSQPIRIVKNLRV 697

Query: 649 CNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           C DCHSV KL+S +YNR+I++RD  RFHHF  G+CSC D+W
Sbjct: 698 CGDCHSVAKLISKLYNRDILLRDRYRFHHFSGGNCSCMDYW 738


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  571 bits (1471), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 287/625 (45%), Positives = 407/625 (65%), Gaps = 3/625 (0%)

Query: 66  PHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTL 125
           P    L YA++IF   LQ+P   LYN LI+    ++   EAL L+  +L   L PD+ T 
Sbjct: 140 PFPTFLAYAKTIFHH-LQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTY 198

Query: 126 PCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD 185
           P VIK          G  +H  V K GF  D +++SSL+ +YA   ++   +++F+    
Sbjct: 199 PFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSA 258

Query: 186 KDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM 245
           +D+VSWN +IDGYVK  E+  A  +FD M  RD+ SW  +++G++  GK++ A+ +F  M
Sbjct: 259 RDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAIVGKIDEAKRLFDEM 318

Query: 246 PNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLE 305
           P RNLVSWN+M+ G++K G+V+ A  LF +M  RD+++WNSM+A Y   G+  EAL L +
Sbjct: 319 PERNLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFD 378

Query: 306 TMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCG 365
            M    V P +AT+VS LSA A L  L+KG  +H+YI  N   V+ ++GT L+ MY+KCG
Sbjct: 379 QMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCG 438

Query: 366 SIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN 425
            I  A  VF A+  K V  W  +I G+ +HG   +A  LF +M   G++P  ITF+ +L+
Sbjct: 439 KISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILS 498

Query: 426 ACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNF 485
           ACSHAG+V++G++  + M + YGIEP +EHYGC++D+L R G+LEEA   I +MPM PN 
Sbjct: 499 ACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNP 558

Query: 486 VIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMM 545
               +LL G R HGN ++GE     LI + P   G Y++LSNIYAAA +WD   +VR +M
Sbjct: 559 SALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLM 618

Query: 546 KKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAA-GHVPDTTQV 604
           K  G  K PG S IE +G++H FV GD SHP++++I+ KL+E+  +LK+A G+  DT  V
Sbjct: 619 KVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGYSADTGNV 678

Query: 605 LLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYN 664
           LL +E++ +KE  L  HSE+LAIA+GL+++ S+  IRIVKNLRVC DCH V KL+S +Y 
Sbjct: 679 LLDMEEE-DKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVIKLISKVYG 737

Query: 665 REIIVRDNSRFHHFKNGSCSCKDFW 689
           REIIVRD +RFHHF++G CSC DFW
Sbjct: 738 REIIVRDRNRFHHFEDGECSCLDFW 762


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  569 bits (1467), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 301/718 (41%), Positives = 441/718 (61%), Gaps = 45/718 (6%)

Query: 11  PIHALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINN 70
           P   LQ+H PS     +L    + +  +Q+HA  +KT L       S+L+         +
Sbjct: 23  PYRVLQEH-PS---LKLLSKCQSIRTFKQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGD 78

Query: 71  LHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIK 130
           + YA S+F+ I + P+L ++N +I+    +     AL  F  ++   + P+++T P ++K
Sbjct: 79  ISYAISLFNSI-EEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLK 137

Query: 131 GAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVS 190
             A+L +  EGKQIH  V KLGF  D F+ +SL++MYA+ GE++  + VFD  + +D +S
Sbjct: 138 SCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAIS 197

Query: 191 WNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM----- 245
           +  LI GY   G ++ A +LFDEMP +D+ SW  ++ G+++ G+ + A  +F  M     
Sbjct: 198 FTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANV 257

Query: 246 -PNRNLV--------------------SW-------------NAMINGYMKAGDVDSACE 271
            PN + +                    SW             NA+I+ Y K GD+ +A E
Sbjct: 258 PPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARE 317

Query: 272 LFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAV 331
           LFDDM  RD+I+WN MI GY     + EAL L   ML   V P + T +S L + A L  
Sbjct: 318 LFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGA 377

Query: 332 LNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVG 391
           ++ G+W+H+YI KN   V   L T LI +Y+KCG+I +A  VF  +  K +  W AMI G
Sbjct: 378 IDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICG 437

Query: 392 LGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP 451
           L MHG A +A +LF+KM   G++P  ITF+G+L+AC HAGLV+ G+++F+ M+ DY I P
Sbjct: 438 LAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISP 497

Query: 452 TIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNL 511
             +HYGC++D+L R G  EEA+S +++M ++P+  IW SLL   R+HG  ++GE  A  L
Sbjct: 498 KSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGACRDHGRVELGELVAERL 557

Query: 512 IKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVG 571
            ++ PD  G YV+LSNIYA AG+WD V+ +R  +  RG +K PG ++IE   V+HEF+VG
Sbjct: 558 FELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVPGCTTIEVDNVVHEFLVG 617

Query: 572 DKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGL 631
           DK HPQ+++I+  L E+  +LK  G V DT++VL  + D++ KE  L +HSE+LAIAFGL
Sbjct: 618 DKVHPQSEDIYRMLEEVDEQLKVFGFVADTSEVLYDM-DEEWKEGALSHHSEKLAIAFGL 676

Query: 632 INVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           I+ K  +PIRI+KNLRVC +CHS TKL+S I+NREII RD +RFHHFK+GSCSC D+W
Sbjct: 677 ISTKPGTPIRIIKNLRVCRNCHSATKLISKIFNREIIARDRNRFHHFKDGSCSCNDYW 734


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  567 bits (1462), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 283/730 (38%), Positives = 441/730 (60%), Gaps = 47/730 (6%)

Query: 1   MQTQTLQHSSPIHALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLL 60
           M + T     P H     LP     +++K   +  + +Q+H+ ++ T LI +  + ++++
Sbjct: 1   MISATTLSPPPTHL--PSLPQTPPLSLIKTCKSMAQLKQIHSQTICTGLISNPIVPAQII 58

Query: 61  SLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLP 120
           +      + ++ YAR +FD  +  P+  ++N +IK Y      + A++++C++L+R ++P
Sbjct: 59  AFCCKHELGDMEYARMVFD-TMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMP 117

Query: 121 DNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVF 180
           D +T P ++K   R  A+K G+++H  + KLGF  + FV ++L+ +Y+  GE+ + R VF
Sbjct: 118 DEYTYPFLLKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVF 177

Query: 181 DAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM-------------------------- 214
           D     D+V+WN +I GY +  + + +MKLFDEM                          
Sbjct: 178 DRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLN 237

Query: 215 ---------------PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMING 259
                          P R L +   L+D ++ CG ++ A  IF  M +R+++SW A++ G
Sbjct: 238 VGKRVHRYVKDLKIEPVRVLEN--ALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTG 295

Query: 260 YMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATL 319
           +   G V  A   FD M  RD ++W +MI GY    RF E L L   M   ++ P++ T+
Sbjct: 296 FTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTM 355

Query: 320 VSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK 379
           VS L+A A L  L  G W+ +YI KN   +D  +G  LI MY  CG++E A+ +F A+  
Sbjct: 356 VSILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPH 415

Query: 380 KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRY 439
           +    WTA+I GL ++G   +ALD+F++M +  + P  +T IGVL AC+H+G+V+ G+++
Sbjct: 416 RDKISWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKF 475

Query: 440 FNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
           F  M   +GIEP + HYGC+VD+L R G+L+EA   I++MP++PN ++W SLL   R H 
Sbjct: 476 FARMTTQHGIEPNVAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVHR 535

Query: 500 NKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSI 559
           ++++ E AA  ++++ P+    YV+L NIYAA  +W+K+ EVR++M  RG +K PG S I
Sbjct: 536 DEEMAEMAAQQILELEPENGAVYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSLI 595

Query: 560 EHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELE 619
           E  G +HEFV GD+ HPQ+ EI+SKL EM   LK AG+ PDT++V L I  ++EKE+ + 
Sbjct: 596 EMNGSVHEFVAGDQVHPQSKEIYSKLDEMSVDLKFAGYSPDTSEVFLDI-GEEEKESAVY 654

Query: 620 NHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFK 679
            HSE+LAIAFGLI+      IRIVKNLR+C DCH V KL+S +YNRE+IVRD +RFHHF+
Sbjct: 655 RHSEKLAIAFGLISSGPGVTIRIVKNLRMCVDCHYVAKLVSKVYNREVIVRDRTRFHHFR 714

Query: 680 NGSCSCKDFW 689
           +GSCSCKD+W
Sbjct: 715 HGSCSCKDYW 724


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  565 bits (1456), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 306/728 (42%), Positives = 429/728 (58%), Gaps = 48/728 (6%)

Query: 6   LQHSSPIHALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVD 65
           L  S P + L ++ P   H N+L         +Q+H+L +K+ L       S+L+     
Sbjct: 13  LPSSDPPYKLLENHP---HLNLLAKCPDIPSLKQIHSLIIKSGLHNTLFAQSKLIEFCAL 69

Query: 66  PHINNLHYARSIFDRIL-QHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFT 124
               +L YA S+F  I  Q P++ ++N LI+ +        +L LF  +L   L P++ T
Sbjct: 70  SPSRDLSYALSLFHSIHHQPPNIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHT 129

Query: 125 LPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD 184
            P + K  A+  A  E KQ+H    KL       V +SL+ MY++ GE+   R VFD   
Sbjct: 130 FPSLFKSCAKSKATHEAKQLHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKST 189

Query: 185 DKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYR 244
            +D VS+  LI GYV +G V+ A +LFDE+P +D+ SW  ++ G+ + G+ E A   F R
Sbjct: 190 LRDAVSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTR 249

Query: 245 M------PNRNLV--------------------SW-------------NAMINGYMKAGD 265
           M      PN++ +                    SW             NA+++ Y K G+
Sbjct: 250 MQEADVSPNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGE 309

Query: 266 VDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSA 325
           + +A +LFD ME +D+I WN+MI GY     + EAL L E ML  +V PND T ++ L A
Sbjct: 310 IGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPA 369

Query: 326 VAGLAVLNKGRWMHSYIVKN----GFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKK 381
            A L  L+ G+W+H+YI KN    G V +  L T +I MY+KCG +E A  VFR++  + 
Sbjct: 370 CASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRS 429

Query: 382 VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFN 441
           +  W AMI GL M+G A +AL LF +M   G +P  ITF+GVL+AC+ AG V  G RYF+
Sbjct: 430 LASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQAGFVELGHRYFS 489

Query: 442 MMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNK 501
            M  DYGI P ++HYGC++D+L R+G  +EAK  + +M M P+  IW SLL+  R HG  
Sbjct: 490 SMNKDYGISPKLQHYGCMIDLLARSGKFDEAKVLMGNMEMEPDGAIWGSLLNACRIHGQV 549

Query: 502 DIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEH 561
           + GEY A  L ++ P+  G YV+LSNIYA AG+WD V+++R  +  +G +K PG +SIE 
Sbjct: 550 EFGEYVAERLFELEPENSGAYVLLSNIYAGAGRWDDVAKIRTKLNDKGMKKVPGCTSIEI 609

Query: 562 RGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENH 621
            GV+HEF+VGDK HPQ++ I   L E+   L+  G VPDT++VL  + D++ KE  L  H
Sbjct: 610 DGVVHEFLVGDKFHPQSENIFRMLDEVDRLLEETGFVPDTSEVLYDM-DEEWKEGALTQH 668

Query: 622 SERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNG 681
           SE+LAIAFGLI+ K  S IRIVKNLRVC +CHS TKL+S I+NREII RD +RFHHFK+G
Sbjct: 669 SEKLAIAFGLISTKPGSTIRIVKNLRVCRNCHSATKLISKIFNREIIARDRNRFHHFKDG 728

Query: 682 SCSCKDFW 689
            CSC D W
Sbjct: 729 FCSCNDRW 736


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 293/694 (42%), Positives = 428/694 (61%), Gaps = 44/694 (6%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYV-DPHINNLHYARSIFDRILQHPSLVLYNLLIKC 96
           + +HA  +KT L   +   S+L+   V  PH + L YA S+F+ I Q P+L+++N + + 
Sbjct: 4   RMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETI-QEPNLLIWNTMFRG 62

Query: 97  YVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFD 156
           +  +     AL L+  ++   LLP+ +T P ++K  A+  A +EG+QIHG V KLG+  D
Sbjct: 63  HALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLD 122

Query: 157 KFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD 216
            +V +SL+SMY + G ++  R+VFD    +D+VS+  LI GY  KG +  A K+FDE+P 
Sbjct: 123 LYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPI 182

Query: 217 RDLFSWTCLVDGFSKCGKVEIAREIFYRM------PN--------------------RNL 250
           +D+ SW  ++ G+++ G  + A E+F  M      P+                    R +
Sbjct: 183 KDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQV 242

Query: 251 VSW-------------NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRF 297
            SW             NA+I+ Y+K G+V++AC LF+ +  +D+I+WN++I GY     +
Sbjct: 243 HSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLY 302

Query: 298 MEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVK--NGFVVDGVLGT 355
            EAL L + ML     PND T++S L A A L  +  GRW+H YI K   G        T
Sbjct: 303 KEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRT 362

Query: 356 LLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKP 415
            LI MY+KCG IE+A  VF +I  + +  W AMI G  MHG A  A D+F++M +  ++P
Sbjct: 363 SLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEP 422

Query: 416 TAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKST 475
             ITF+G+L+ACSH+G+++ GR  F  M  DY I P +EHYGC++D+L  +G  +EA+  
Sbjct: 423 DDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEM 482

Query: 476 IESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQW 535
           I +M M P+ VIW SLL   + HGN ++GE  A NLIK+ P   G YV+LSNIYA AG+W
Sbjct: 483 INTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRW 542

Query: 536 DKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAA 595
           ++V+++R ++  +G +K PG SSIE   V+HEF++GDK HP+  EI+  L EM   L+ A
Sbjct: 543 NEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEA 602

Query: 596 GHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSV 655
           G VPDT++VL  +E++  KE  L +HSE+LAIAFGLI+ K  + + IVKNLRVC +CH  
Sbjct: 603 GFVPDTSEVLQEMEEE-WKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEA 661

Query: 656 TKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           TKL+S IY REII RD +RFHHF++G CSC D+W
Sbjct: 662 TKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 695



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 116/497 (23%), Positives = 199/497 (40%), Gaps = 150/497 (30%)

Query: 31  SSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDR-----ILQHP 85
           S   +E QQ+H   +K        + + L+S+YV      L  AR +FD+     ++ + 
Sbjct: 101 SKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQN--GRLEDARKVFDQSSHRDVVSYT 158

Query: 86  SLVL-------------------------YNLLIKCYVFNQRSHEALTLFCDLLDRFLLP 120
           +L+                          +N +I  Y     + EAL LF +++   + P
Sbjct: 159 ALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRP 218

Query: 121 DNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVF 180
           D  T+  V+   A+  +I+ G+Q+H  +   GFG +  ++++L+ +Y K GE++    +F
Sbjct: 219 DESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLF 278

Query: 181 DAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDR----------------D 218
           + +  KD++SWN LI GY      + A+ LF EM      P+                 +
Sbjct: 279 EGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIE 338

Query: 219 LFSW-------------------TCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMING 259
           +  W                   T L+D ++KCG +E A+++F  + NR+L SWNAMI G
Sbjct: 339 IGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFG 398

Query: 260 YMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATL 319
                                          + ++GR   A ++   M   ++ P+D T 
Sbjct: 399 -------------------------------FAMHGRANAAFDIFSRMRKNEIEPDDITF 427

Query: 320 VSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK 379
           V  LSA +   +L+ GR                                    +FR++ +
Sbjct: 428 VGLLSACSHSGMLDLGR-----------------------------------HIFRSMKE 452

Query: 380 -----KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVN 434
                 K+ H+  MI  LG  G+  +A ++ N    M M+P  + +  +L AC   G V 
Sbjct: 453 DYKITPKLEHYGCMIDLLGHSGLFKEAEEMINT---MEMEPDGVIWCSLLKACKMHGNVE 509

Query: 435 DGRRYFNMMINDYGIEP 451
            G  Y   +I    IEP
Sbjct: 510 LGESYAQNLIK---IEP 523


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 280/651 (43%), Positives = 406/651 (62%), Gaps = 35/651 (5%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYV 98
           QLHAL +++       +S  LL  Y +PH +N  +A  +F  I  +P++ ++N++IK  +
Sbjct: 51  QLHALVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSI-PNPNVFIWNIVIKGCL 109

Query: 99  FNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKF 158
            N +  +A+  +  ++     P+ FT P + K  +   A++EG+QIHG V K G G D  
Sbjct: 110 ENNKLFKAIYFYGRMVID-ARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVH 168

Query: 159 VLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRD 218
           + S+ + MYA FG ++  R++F +                   GE              D
Sbjct: 169 IKSAGIQMYASFGRLEDARKMFYS-------------------GE-------------SD 196

Query: 219 LFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEI 278
           +  W  ++DG+ KCG +E A+ +F +MP +N+ SWN MING  K G++  A +LFD+M  
Sbjct: 197 VVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSE 256

Query: 279 RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWM 338
           RD I+W+SM+ GY   GR+ EALE+ + M   +  P    L S L+A + +  +++GRW+
Sbjct: 257 RDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWV 316

Query: 339 HSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMA 398
           H+Y+ +N   +D VLGT L+ MY+KCG ++    VF  + ++++  W AMI GL +HG A
Sbjct: 317 HAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRA 376

Query: 399 TQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGC 458
             AL+LF+K+    MKP  IT +GVL AC+HAG V+ G R F  M   YG++P +EHYGC
Sbjct: 377 EDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGC 436

Query: 459 LVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDT 518
           +VD+L R+G   EA+  I SMPM+PN  +W +LL   R HGN D+ E     L+++ P  
Sbjct: 437 MVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQN 496

Query: 519 IGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQT 578
            G YV+LSNIYA  G++D VS++R++MK RG +  PG S ++  G +HEF +GD SHPQ 
Sbjct: 497 SGRYVLLSNIYAKVGRFDDVSKIRKLMKNRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQM 556

Query: 579 DEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRS 638
            EI+ KL  ++ +L+ AGH PDT+QVL  I D++EKE  +  HSE+LAIAFGLIN     
Sbjct: 557 KEIYRKLKIIKERLQMAGHSPDTSQVLFDI-DEEEKETAVNYHSEKLAIAFGLINTLPGK 615

Query: 639 PIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            I IVKNLRVC+DCHS TKL+S I++REIIVRD  R+HHFKNG+CSCKDFW
Sbjct: 616 RIHIVKNLRVCDDCHSATKLISQIFDREIIVRDRVRYHHFKNGTCSCKDFW 666


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  562 bits (1449), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 284/671 (42%), Positives = 416/671 (61%), Gaps = 47/671 (7%)

Query: 64  VDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNF 123
           V PH + L YA S+F+ I Q P+L+++N +++ +  +     AL ++  ++    LP+++
Sbjct: 7   VSPHFDGLPYAISVFETI-QEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSY 65

Query: 124 TLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAM 183
           + P ++K  A+  A +EG+QIH  V KLG G D++V +SL+SMYA+ G ++  R+VFDA 
Sbjct: 66  SFPFLLKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDAS 125

Query: 184 DDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFY 243
             +D+VS   LI GY  +G+   A K+FDE+ +RD+ SW  ++ G+ + G+ E A E+F 
Sbjct: 126 SHRDVVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFK 185

Query: 244 RM------PN--------------------RNLVSW-----------------NAMINGY 260
            M      P+                    R + SW                 NA+I+ Y
Sbjct: 186 EMMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLY 245

Query: 261 MKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLV 320
            K GDV++A  LF+ +  +D+++WN++I GY     + EAL L + ML     PND TL+
Sbjct: 246 SKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLL 305

Query: 321 SALSAVAGLAVLNKGRWMHSYIVKN--GFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS 378
           S L A A L  ++ GRW+H YI K   G   +  L T LI MY+KCG IE+A  VF ++ 
Sbjct: 306 SVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSML 365

Query: 379 KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR 438
            + +  W AMI G  MHG A  A DLF++M    ++P  ITF+G+L+ACSH+GL++ GR+
Sbjct: 366 YRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQ 425

Query: 439 YFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNH 498
            F  M  DY + P +EHYGC++D+L  +G  +EA+  I +MPM P+ VIW SLL   + H
Sbjct: 426 IFKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDGVIWCSLLKACKKH 485

Query: 499 GNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSS 558
           GN ++ E  A  LIK+ P+  G YV+LSNIYA AG+W+ V+ VR ++  +G +K PG SS
Sbjct: 486 GNLELAESFAQKLIKIEPENSGSYVLLSNIYATAGRWEDVARVRGVLNGKGMKKVPGCSS 545

Query: 559 IEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAEL 618
           IE   V+HEF++GDK HP+  EI+  L EM  +L+ AG  PDT++VL  +E++  KE  L
Sbjct: 546 IEVDSVVHEFIIGDKLHPRRREIYHMLEEMDVQLEEAGFAPDTSEVLQEMEEEW-KEGAL 604

Query: 619 ENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHF 678
            +HSE+LAIAFGLI+ K  + + IVKNLRVC +CH  TKL+S IY REI+ RD +RFHHF
Sbjct: 605 RHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIVARDRTRFHHF 664

Query: 679 KNGSCSCKDFW 689
           ++G CSC D+W
Sbjct: 665 RDGVCSCCDYW 675


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  562 bits (1449), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 292/706 (41%), Positives = 432/706 (61%), Gaps = 44/706 (6%)

Query: 26  NILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYV-DPHINNLHYARSIFDRILQH 84
           ++L    T +  + +HA  +KT L   +   S+LL   V  PH + L YA S+FD I Q 
Sbjct: 7   SLLHXCKTLQSLRIIHAQMIKTGLHNTNYALSKLLEXCVLSPHFDGLPYAISVFDTI-QE 65

Query: 85  PSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQI 144
           P L+++N + + +  +     AL L+  ++   LLP+++T P ++K  A+  A KEG+Q+
Sbjct: 66  PXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEGQQL 125

Query: 145 HGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEV 204
           HG V K GF  D ++ +SL+SMY + G ++  ++V D    +D+VS+  LI GY  +G +
Sbjct: 126 HGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYASRGXI 185

Query: 205 EVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM------PN----------- 247
           E A K+FDE+P +D+ SW   + G+++ G  + A E+F +M      P+           
Sbjct: 186 ESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSAC 245

Query: 248 ---------RNLVSW-------------NAMINGYMKAGDVDSACELFDDMEIRDLITWN 285
                    R + SW             NA+I+ Y K G++++AC LF  +  +D+I+WN
Sbjct: 246 AQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVISWN 305

Query: 286 SMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVK- 344
           ++I GY     + EAL L + ML     PND T++S LSA A L  ++ GRW+H YI K 
Sbjct: 306 TLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVYIDKR 365

Query: 345 -NGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALD 403
             G      L T LI MY+KCG IE+A  VF ++  + +  W AMI G  MHG A  A D
Sbjct: 366 LKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANAAFD 425

Query: 404 LFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDIL 463
           +F++M + G++P  ITF+G+L+ACSH+G+++ GR  F  M  DY + P +EHYGC++D+ 
Sbjct: 426 IFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYKLMPKLEHYGCMIDLX 485

Query: 464 CRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYV 523
             +G  +EA+  I +M M P+ VIW SLL   + HGN ++GE  A NLIK+ P+  G YV
Sbjct: 486 GHSGLFKEAEKMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPENPGSYV 545

Query: 524 VLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHS 583
           +LSNIYA A +W++V++ R ++  +G +K PG SSIE   V+HEF++GDK HP+  EI+ 
Sbjct: 546 LLSNIYATAERWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYG 605

Query: 584 KLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIV 643
            L EM   L+ AG VPDT++VL  +E++  KE  L +HSE+LAIAFGLI+ K  + + IV
Sbjct: 606 MLEEMEVLLEEAGFVPDTSEVLQEMEEE-WKEGALRHHSEKLAIAFGLISTKPGTKLTIV 664

Query: 644 KNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           KNLRVC +CH  TKL+S IY REII RD +RFHHF++G CSC D+W
Sbjct: 665 KNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGECSCNDYW 710



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 105/240 (43%), Gaps = 12/240 (5%)

Query: 322 ALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQ---MYSKCGSIESALTVFRAIS 378
           +LS +     L   R +H+ ++K G        + L++   +      +  A++VF  I 
Sbjct: 5   SLSLLHXCKTLQSLRIIHAQMIKTGLHNTNYALSKLLEXCVLSPHFDGLPYAISVFDTIQ 64

Query: 379 KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR 438
           +  +  W  M  G  +      AL L+  M  +G+ P + TF  +L +C+ +    +G++
Sbjct: 65  EPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEGQQ 124

Query: 439 YFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNH 498
               ++  +G +  +  +  L+ +  + G LE+A+   +    R + V + +L++G  + 
Sbjct: 125 LHGQVLK-FGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHR-DVVSYTALITGYASR 182

Query: 499 GNKDIGEYAANNLIKVAP--DTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGS 556
           G  +    +A+ +    P  D +     +S  YA  G + +  E+ + M K   R D  +
Sbjct: 183 GXIE----SAHKMFDEIPVKDVVSWNAXISG-YAETGNYKEALELFKKMMKTNVRPDEST 237


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  562 bits (1448), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 279/651 (42%), Positives = 405/651 (62%), Gaps = 35/651 (5%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYV 98
           QLH L +++       +S  LL  Y +PH +N  +A  +F  I  +P++ ++N++IK  +
Sbjct: 51  QLHGLVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSI-PNPNVFIWNIVIKGCL 109

Query: 99  FNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKF 158
            N +  +A+  +  ++     P+ FT P + K  +   A++EG+QIHG V K G G D  
Sbjct: 110 ENNKLFKAIYFYGRMVID-ARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVH 168

Query: 159 VLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRD 218
           + S+ + MYA FG ++  R++F +                   GE              D
Sbjct: 169 IKSAGIHMYASFGRLEDARKMFYS-------------------GE-------------SD 196

Query: 219 LFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEI 278
           +  W  ++DG+ KCG +E A+ +F +MP +N+ SWN MING  K G++  A +LFD+M  
Sbjct: 197 VVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSE 256

Query: 279 RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWM 338
           RD I+W+SM+ GY   GR+ EALE+ + M   +  P    L S L+A + +  +++GRW+
Sbjct: 257 RDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWV 316

Query: 339 HSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMA 398
           H+Y+ +N   +D VLGT L+ MY+KCG ++    VF  + ++++  W AMI GL +HG A
Sbjct: 317 HAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRA 376

Query: 399 TQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGC 458
             AL+LF+K+    MKP  IT +GVL AC+HAG V+ G R F  M   YG++P +EHYGC
Sbjct: 377 EDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGC 436

Query: 459 LVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDT 518
           +VD+L R+G   EA+  I SMPM+PN  +W +LL   R HGN D+ E     L+++ P  
Sbjct: 437 MVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQN 496

Query: 519 IGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQT 578
            G YV+LSNIYA  G++D VS++R++MK RG +  PG S ++  G +HEF +GD SHPQ 
Sbjct: 497 SGRYVLLSNIYAKVGRFDDVSKIRKLMKDRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQM 556

Query: 579 DEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRS 638
            EI+ KL  ++ +L+ AGH PDT+QVL  I D++EKE  +  HSE+LAIAFGLIN     
Sbjct: 557 KEIYRKLKIIKERLQMAGHSPDTSQVLFDI-DEEEKETAVNYHSEKLAIAFGLINTLPGK 615

Query: 639 PIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            I IVKNLRVC+DCHS TKL+S I++REIIVRD  R+HHFKNG+CSCKDFW
Sbjct: 616 RIHIVKNLRVCDDCHSATKLISQIFDREIIVRDRVRYHHFKNGTCSCKDFW 666


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  561 bits (1447), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 293/675 (43%), Positives = 417/675 (61%), Gaps = 44/675 (6%)

Query: 57  SRLLSLYV-DPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLD 115
           S+LL   V  PH +   YA S+F  I Q P+ +++N +++ Y  +     AL L+  ++ 
Sbjct: 1   SKLLEFCVLSPHFDGFPYAISVFATI-QEPNQLIWNTMLRGYALSSDPVSALKLYVVMIS 59

Query: 116 RFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDL 175
             LLP+++T P ++K  A+  A +EG+QIHG V KLG+  D +V +SL+SMYA+ G ++ 
Sbjct: 60  LGLLPNSYTFPFLLKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLED 119

Query: 176 GRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKV 235
             +VFD    +D+VS+  LI GY   G +  A ++FDE+P +D+ SW  ++ G+++ G  
Sbjct: 120 AHKVFDRSSHRDVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSY 179

Query: 236 EIAREIFYRM------PN--------------------RNLVSW-------------NAM 256
           + A E+F  M      P+                    R + SW             NA+
Sbjct: 180 KEALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNAL 239

Query: 257 INGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPND 316
           I+ Y K G V++AC LF+ +  +D+++WN++I GY     + EAL L + ML     PND
Sbjct: 240 IDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPND 299

Query: 317 ATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV--LGTLLIQMYSKCGSIESALTVF 374
            T+VS L A A L  ++ GRW+H YI K    V     L T LI MY+KCG IE+A  VF
Sbjct: 300 VTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVF 359

Query: 375 RAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVN 434
            ++  K +  W AMI G  MHG A    DLF++M + G++P  ITF+G+L+ACSH+G ++
Sbjct: 360 NSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLD 419

Query: 435 DGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG 494
            GR  F  M  DY I P +EHYGC++D+L  +G  +EAK  I++MPM P+ VIW SLL  
Sbjct: 420 LGRHIFKSMTQDYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKA 479

Query: 495 ARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDP 554
            R HGN ++ E  A NL+KV P+  G YV+LSNIYA AG+WD+V++VR ++  +G +K P
Sbjct: 480 CRRHGNLELAESFARNLMKVEPENPGSYVLLSNIYATAGEWDEVAKVRALLNGKGMKKVP 539

Query: 555 GSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEK 614
           G SSIE    +HEF+VGDK HP+  EI+  L EM   L+ AG VPDT++VL  +E++  K
Sbjct: 540 GCSSIEIDSEVHEFIVGDKLHPRNREIYGMLEEMEALLEEAGFVPDTSEVLQEMEEE-WK 598

Query: 615 EAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSR 674
           E  L +HSE+LAIAFGLI+ K  + + IVKNLRVC +CH  TKL+S IY REII RD +R
Sbjct: 599 EGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLVSKIYKREIIARDRTR 658

Query: 675 FHHFKNGSCSCKDFW 689
           FHHF++G CSC DFW
Sbjct: 659 FHHFRDGVCSCNDFW 673


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  561 bits (1445), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 293/706 (41%), Positives = 432/706 (61%), Gaps = 44/706 (6%)

Query: 26  NILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYV-DPHINNLHYARSIFDRILQH 84
           ++L    T +  + +HA  +KT L   +   S+L+   V  PH + L YA S+F+ I Q 
Sbjct: 7   SLLHNCKTLQSLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETI-QE 65

Query: 85  PSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQI 144
           P+L+++N + + +  +     AL L+  ++   LLP+ +T P ++K  A+  A +EG+QI
Sbjct: 66  PNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQI 125

Query: 145 HGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEV 204
           HG V KLG+  D +V +SL+SMY + G ++  R+VFD    +D+VS+  LI GY  KG +
Sbjct: 126 HGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYI 185

Query: 205 EVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM------PN----------- 247
             A K+FDE+P +D+ SW  ++ G+++ G  + A E+F  M      P+           
Sbjct: 186 ASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSAC 245

Query: 248 ---------RNLVSW-------------NAMINGYMKAGDVDSACELFDDMEIRDLITWN 285
                    R + SW             NA+I+ Y+K G+V++AC LF+ +  +D+I+WN
Sbjct: 246 AQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWN 305

Query: 286 SMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVK- 344
           ++I GY     + EAL L + ML     PND T++S L A A L  +  GRW+H YI K 
Sbjct: 306 TLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKR 365

Query: 345 -NGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALD 403
             G        T LI MY+KCG IE+A  VF +I  + +  W AMI G  MHG A  A D
Sbjct: 366 LKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFD 425

Query: 404 LFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDIL 463
           +F++M +  ++P  ITF+G+L+ACSH+G+++ GR  F  M  DY I P +EHYGC++D+L
Sbjct: 426 IFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLL 485

Query: 464 CRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYV 523
             +G  +EA+  I +M M P+ VIW SLL   + + N ++GE  A NLIK+ P   G YV
Sbjct: 486 GHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMYANVELGESYAQNLIKIEPKNPGSYV 545

Query: 524 VLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHS 583
           +LSNIYA AG+W++V+++R ++  +G +K PG SSIE   V+HEF++GDK HP+  EI+ 
Sbjct: 546 LLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYG 605

Query: 584 KLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIV 643
            L EM   L+ AG VPDT++VL  +E++  KE  L +HSE+LAIAFGLI+ K  + + IV
Sbjct: 606 MLEEMEVLLEEAGFVPDTSEVLQEMEEE-WKEGALRHHSEKLAIAFGLISTKPGTKLTIV 664

Query: 644 KNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           KNLRVC +CH  TKL+S IY REII RD +RFHHF++G CSC D+W
Sbjct: 665 KNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 710



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 50/240 (20%), Positives = 101/240 (42%), Gaps = 12/240 (5%)

Query: 322 ALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQ---MYSKCGSIESALTVFRAIS 378
           +LS +     L   R +H+ ++K G        + LI+   +      +  A++VF  I 
Sbjct: 5   SLSLLHNCKTLQSLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQ 64

Query: 379 KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR 438
           +  +  W  M  G  +      AL L+  M  +G+ P   TF  +L +C+ +    +G++
Sbjct: 65  EPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQ 124

Query: 439 YFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNH 498
               ++   G +  +  +  L+ +  + G LE+A+   +    R + V + +L++G  + 
Sbjct: 125 IHGHVLK-LGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHR-DVVSYTALITGYASK 182

Query: 499 GNKDIGEYAANNLIKVAP--DTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGS 556
           G       +A  +    P  D +    ++S  YA  G   +  E+ + M K   R D  +
Sbjct: 183 GYIA----SAQKMFDEIPIKDVVSWNAMISG-YAETGNNKEALELFKEMMKTNVRPDEST 237


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  559 bits (1441), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 298/721 (41%), Positives = 439/721 (60%), Gaps = 48/721 (6%)

Query: 11  PIHALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYV-DPHIN 69
           P  +++ H PS    ++L    T +  + +HA  +K  L   +   S+L+   +  PH  
Sbjct: 27  PYDSIRNH-PS---LSLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFE 82

Query: 70  NLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVI 129
            L YA S+F + +Q P+L+++N + + +  +     AL L+  ++   LLP+++T P V+
Sbjct: 83  GLPYAISVF-KTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVL 141

Query: 130 KGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLV 189
           K  A+  A KEG+QIHG V KLG   D +V +SL+SMY + G ++   +VFD    +D+V
Sbjct: 142 KSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVV 201

Query: 190 SWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM---- 245
           S+  LI GY  +G +E A KLFDE+P +D+ SW  ++ G+++ G  + A E+F  M    
Sbjct: 202 SYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTN 261

Query: 246 --PNR---------------------------------NLVSWNAMINGYMKAGDVDSAC 270
             P+                                  NL   NA+I+ Y K G++++AC
Sbjct: 262 VRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETAC 321

Query: 271 ELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLA 330
            LF+ +  +D+I+WN++I GY     + EAL L + ML     PND T++S L A A L 
Sbjct: 322 GLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLG 381

Query: 331 VLNKGRWMHSYIVK--NGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAM 388
            ++ GRW+H YI K   G      L T LI MY+KCG IE+A  VF +I  K +  W AM
Sbjct: 382 AIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAM 441

Query: 389 IVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYG 448
           I G  MHG A  + DLF++M ++G++P  ITF+G+L+ACSH+G+++ GR  F  M  DY 
Sbjct: 442 IFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYK 501

Query: 449 IEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAA 508
           + P +EHYGC++D+L  +G  +EA+  I  M M P+ VIW SLL   + HGN ++GE  A
Sbjct: 502 MTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFA 561

Query: 509 NNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEF 568
            NLIK+ P+  G YV+LSNIYA+AG+W++V++ R ++  +G +K PG SSIE   V+HEF
Sbjct: 562 ENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEF 621

Query: 569 VVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIA 628
           ++GDK HP+  EI+  L EM   L+ AG VPDT++VL  +E++  KE  L +HSE+LAIA
Sbjct: 622 IIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEE-WKEGALRHHSEKLAIA 680

Query: 629 FGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDF 688
           FGLI+ K  + + IVKNLRVC +CH  TKL+S IY REII RD +RFHHF++G CSC D+
Sbjct: 681 FGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDY 740

Query: 689 W 689
           W
Sbjct: 741 W 741


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  558 bits (1439), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 284/667 (42%), Positives = 411/667 (61%), Gaps = 43/667 (6%)

Query: 64  VDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNF 123
           + PH   L YA S+F+ I Q P+L+++N + + +  +     AL L+  ++   LLP+++
Sbjct: 6   LSPHFEGLPYAISVFETI-QEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSY 64

Query: 124 TLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAM 183
           T P ++K  A+L A KEG QIHG V KLG+  D +V +SL+SMY +   ++   +VFD  
Sbjct: 65  TFPFLLKSCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRS 124

Query: 184 DDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFY 243
             +D+VS+  L+ GY  +G +E A  +FDE+P +D+ SW  ++ G+ + G  + A E+F 
Sbjct: 125 SHRDVVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFK 184

Query: 244 RM------PN--------------------RNLVSW-------------NAMINGYMKAG 264
            M      P+                    R + SW             NA+I+ Y K G
Sbjct: 185 EMMKTNVRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCG 244

Query: 265 DVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS 324
           ++++AC LF  +  +D+I+WN +I GY     + EAL L + ML     PND T++S L 
Sbjct: 245 EMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILH 304

Query: 325 AVAGLAVLNKGRWMHSYIVK--NGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKV 382
           A A L  ++ GRW+H YI K   G      L T LI MYSKCG IE+A  VF ++  K +
Sbjct: 305 ACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSL 364

Query: 383 GHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNM 442
             W AMI G  MHG A  A D+F++M +  +KP  ITF+G+L+ACSHAG+++ GR  F  
Sbjct: 365 PAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRS 424

Query: 443 MINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKD 502
           M ++Y I P +EHYGC++D+L  +G  +EA+  I +M M P+ VIW SLL   + HGN +
Sbjct: 425 MTHNYKITPKLEHYGCMIDLLGHSGLFKEAEEMISTMTMEPDGVIWCSLLKACKMHGNVE 484

Query: 503 IGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHR 562
           +GE  A NL K+ P+  G YV+LSNIYA AG+W++V+ +R ++  +G +K PG SSIE  
Sbjct: 485 LGEKFAQNLFKIEPNNPGSYVLLSNIYATAGRWNEVARIRGLLNDKGMKKVPGCSSIEID 544

Query: 563 GVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHS 622
            V+HEF++GDK HP+  EI+  L EM   L+ AG VPDT++VL  +E++  KE  L +HS
Sbjct: 545 SVVHEFIIGDKFHPRNREIYGMLEEMEVLLQEAGFVPDTSEVLQEMEEEF-KEGALRHHS 603

Query: 623 ERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGS 682
           E+LAIAFGLI+ K  + + IVKNLRVC +CH  TKL+S IY REII RD +RFHHF++G 
Sbjct: 604 EKLAIAFGLISTKPETKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGV 663

Query: 683 CSCKDFW 689
           CSC D+W
Sbjct: 664 CSCNDYW 670


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  558 bits (1439), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 279/709 (39%), Positives = 424/709 (59%), Gaps = 41/709 (5%)

Query: 20  PSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFD 79
           P+    ++L+   +  + QQ+H  ++K  L  +  + +R+++        +  YAR +FD
Sbjct: 38  PTHPLISLLETCESMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFD 97

Query: 80  RILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIK 139
            I + P+L ++N +I+ Y         ++L+ ++L R + PD +T P + KG  R  A++
Sbjct: 98  EIPE-PNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALE 156

Query: 140 EGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYV 199
            G+Q+HG V K G  ++ FV ++LV MY   G++D  R VFD     D+++WN +I  Y 
Sbjct: 157 YGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYN 216

Query: 200 KKGEVEVAMKLFDEMPDRDLFSWT------------------------------------ 223
           K G+ E + +LF  M D+ +   T                                    
Sbjct: 217 KVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLV 276

Query: 224 ---CLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRD 280
               ++D ++ CG+++ A  IF  M NR+++SW  +++G+   G++D A   FD M  +D
Sbjct: 277 LENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKD 336

Query: 281 LITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHS 340
            ++W +MI GY  + RF EALEL   M   +V P++ T+VS L+A A L  L  G W+ +
Sbjct: 337 YVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRT 396

Query: 341 YIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQ 400
           YI +N    D  +   LI MY KCG ++ A ++FR +S++    WTAMIVGL ++G   +
Sbjct: 397 YIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEK 456

Query: 401 ALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLV 460
           ALD+F+ M +  + P  IT+IGVL+AC+H GLV+ GR+YF  M + +GIEP I HYGCLV
Sbjct: 457 ALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLV 516

Query: 461 DILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIG 520
           D+L R G L+EA   IE+MP++ N ++W +LL+G R +   D+ E     ++++ PD   
Sbjct: 517 DLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGA 576

Query: 521 CYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDE 580
            YV+L NIYAA  +W+ + E+R+MM  +G +K PG S IE  G +HEFV GD+SHPQT  
Sbjct: 577 VYVLLCNIYAACKRWNDLRELRQMMMDKGIKKXPGCSLIEMNGRVHEFVAGDRSHPQTKN 636

Query: 581 IHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPI 640
           I +KL +M   LK AG+ PD ++V L I ++ +KE  +  HSE+LAIAFGLIN      I
Sbjct: 637 IDAKLDKMTQDLKLAGYSPDISEVFLDIAEE-DKENSVFRHSEKLAIAFGLINSPPGVTI 695

Query: 641 RIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           RI KNLR+C DCH++ KL+S +YNRE+IVRD +RFHHFK+G CSCKD+W
Sbjct: 696 RITKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGLCSCKDYW 744


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  558 bits (1439), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 279/709 (39%), Positives = 424/709 (59%), Gaps = 41/709 (5%)

Query: 20  PSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFD 79
           P+    ++L+   +  + QQ+H  ++K  L  +  + +R+++        +  YAR +FD
Sbjct: 17  PTHPLISLLETCESMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFD 76

Query: 80  RILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIK 139
            I + P+L ++N +I+ Y         ++L+ ++L R + PD +T P + KG  R  A++
Sbjct: 77  EIPE-PNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALE 135

Query: 140 EGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYV 199
            G+Q+HG V K G  ++ FV ++LV MY   G++D  R VFD     D+++WN +I  Y 
Sbjct: 136 YGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYN 195

Query: 200 KKGEVEVAMKLFDEMPDRDLFSWT------------------------------------ 223
           K G+ E + +LF  M D+ +   T                                    
Sbjct: 196 KVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLV 255

Query: 224 ---CLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRD 280
               ++D ++ CG+++ A  IF  M NR+++SW  +++G+   G++D A   FD M  +D
Sbjct: 256 LENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKD 315

Query: 281 LITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHS 340
            ++W +MI GY  + RF EALEL   M   +V P++ T+VS L+A A L  L  G W+ +
Sbjct: 316 YVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRT 375

Query: 341 YIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQ 400
           YI +N    D  +   LI MY KCG ++ A ++FR +S++    WTAMIVGL ++G   +
Sbjct: 376 YIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEK 435

Query: 401 ALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLV 460
           ALD+F+ M +  + P  IT+IGVL+AC+H GLV+ GR+YF  M + +GIEP I HYGCLV
Sbjct: 436 ALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLV 495

Query: 461 DILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIG 520
           D+L R G L+EA   IE+MP++ N ++W +LL+G R +   D+ E     ++++ PD   
Sbjct: 496 DLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGA 555

Query: 521 CYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDE 580
            YV+L NIYAA  +W+ + E+R+MM  +G +K PG S IE  G +HEFV GD+SHPQT  
Sbjct: 556 VYVLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCSLIEMNGRVHEFVAGDRSHPQTKN 615

Query: 581 IHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPI 640
           I +KL +M   LK AG+ PD ++V L I ++ +KE  +  HSE+LAIAFGLIN      I
Sbjct: 616 IDAKLDKMTQDLKLAGYSPDISEVFLDIAEE-DKENSVFRHSEKLAIAFGLINSPPGVTI 674

Query: 641 RIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           RI KNLR+C DCH++ KL+S +YNRE+IVRD +RFHHFK+G CSCKD+W
Sbjct: 675 RITKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGLCSCKDYW 723


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  556 bits (1432), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 293/706 (41%), Positives = 430/706 (60%), Gaps = 44/706 (6%)

Query: 26  NILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYV-DPHINNLHYARSIFDRILQH 84
           ++L    T +  + +HA  +KT L   +   SRLL   +  P+ + L YA S+F+ I Q 
Sbjct: 7   SLLHNCKTLQSLRIIHAQMIKTGLHNTNYALSRLLEFCILSPNFDGLPYAISVFETI-QE 65

Query: 85  PSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQI 144
           P+L+++N + + +  +     A+ L+  ++   LLP+++T P ++K  A+L   KEG+QI
Sbjct: 66  PNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEGQQI 125

Query: 145 HGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEV 204
           HG V KLG+  D +V +SL+SMY K G      +VFD    +D+VS+  LI GY  +G +
Sbjct: 126 HGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRGYI 185

Query: 205 EVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM------PN----------- 247
           E A K+FDE+P +D+ SW  ++ G++  G  + A ++F  M      P+           
Sbjct: 186 ESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSAC 245

Query: 248 ---------RNLVSW-------------NAMINGYMKAGDVDSACELFDDMEIRDLITWN 285
                    R + SW             NA+I+ Y K G+V++AC LF  +  +D+I+WN
Sbjct: 246 AQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWN 305

Query: 286 SMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVK- 344
           +MI GY     + EAL L + ML     PND T++S L A A L  ++ GRW+H YI K 
Sbjct: 306 TMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKR 365

Query: 345 -NGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALD 403
             G      L T LI MY+KCG IE+A  VF ++  + +    AMI G  MHG A  A D
Sbjct: 366 IKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFD 425

Query: 404 LFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDIL 463
           +F++M + G++P  ITF+G+L+ACSH+G+++ GRR F  M  +Y I P +EHYGC++D+L
Sbjct: 426 IFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKITPKLEHYGCMIDLL 485

Query: 464 CRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYV 523
              G  +EA+  I +M M P+ VIW SLL   + HGN ++GE  A  LIK+ P+  G YV
Sbjct: 486 GHLGLFKEAEEMINTMTMEPDGVIWCSLLKACKMHGNVELGESFAQKLIKIEPENPGSYV 545

Query: 524 VLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHS 583
           +LSNIYA AG+W++V+ +R ++  +G +K PG SSIE   V+HEF++GDK HP+  EI+ 
Sbjct: 546 LLSNIYATAGRWNEVANIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYG 605

Query: 584 KLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIV 643
            L EM   L+ AG VPDT++VL  +E++  K+  L +HSE+LAIAFGLI+ K  + + IV
Sbjct: 606 MLEEMEVLLEEAGFVPDTSEVLQEMEEEF-KQGALRHHSEKLAIAFGLISTKPGTKLTIV 664

Query: 644 KNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           KNLRVC +CH  TKL+S IY REII RD +RFHHF++G CSC D+W
Sbjct: 665 KNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 710



 Score = 43.9 bits (102), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 43/230 (18%), Positives = 96/230 (41%), Gaps = 11/230 (4%)

Query: 322 ALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQ---MYSKCGSIESALTVFRAIS 378
           +LS +     L   R +H+ ++K G        + L++   +      +  A++VF  I 
Sbjct: 5   SLSLLHNCKTLQSLRIIHAQMIKTGLHNTNYALSRLLEFCILSPNFDGLPYAISVFETIQ 64

Query: 379 KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR 438
           +  +  W  M  G  +      A+ L+  M  +G+ P + TF  +L +C+   +  +G++
Sbjct: 65  EPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEGQQ 124

Query: 439 YFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNH 498
               ++   G E  +  +  L+ +  + G  ++A    +    R + V + +L++G  + 
Sbjct: 125 IHGHVLK-LGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHR-DVVSYTALITGYASR 182

Query: 499 GNKDIGEYAANNLIKVAP--DTIGCYVVLSNIYAAAGQWDKVSEVREMMK 546
           G  +    +A  +    P  D +    ++S         + +   +EMMK
Sbjct: 183 GYIE----SAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMK 228


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  553 bits (1426), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 297/692 (42%), Positives = 429/692 (61%), Gaps = 48/692 (6%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSL-YVDPHINNLHYARSIFDRILQHPSLVLYNLLIKC 96
           + +HA  +KT L   +   S+LL    V PH +   YA S+FD I Q P+L+++N + + 
Sbjct: 5   RXIHAQMIKTGLHNTNYALSKLLEFCVVSPHFDGFPYAISVFDTI-QEPNLLIWNTMFRG 63

Query: 97  YVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFD 156
           +  +     AL L+  ++   LLPD++T P ++K  A+    KEG+QIHG V KLGF  D
Sbjct: 64  HALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDLD 123

Query: 157 KFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD 216
            +V +SL+SMYA+ G ++  R+VFD    +D+VS+  LI GYV +G +E A KLFDE+P 
Sbjct: 124 IYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIPG 183

Query: 217 RDLFSWTCLVDGFSKCGKVEIAREIFYRM-------PN--------------------RN 249
           +D+ SW  ++ G+ + G  + A E+F  M       P+                    R+
Sbjct: 184 KDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGRH 243

Query: 250 LVSW-------------NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGR 296
           + SW             NA+I+ Y K G+V++ACELFD +  +D+I+WN++I GY     
Sbjct: 244 VHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNL 303

Query: 297 FMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKN--GFVVD-GVL 353
           + EAL L + ML     PND T++S L A A L  ++ GRW+H YI K   G V +   L
Sbjct: 304 YKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSL 363

Query: 354 GTLLIQMYSKCGSIESALTVF-RAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG 412
            T LI MY+KCG I++A  VF  ++S + +  W AMI G  MHG A  A D+F++M   G
Sbjct: 364 QTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNG 423

Query: 413 MKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEA 472
           ++P  ITF+G+L+ACSH+G+++ GR  F  M   Y I P +EHYGC++D+L  +G  +EA
Sbjct: 424 IEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEITPKLEHYGCMIDLLGHSGLFKEA 483

Query: 473 KSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAA 532
           +  I +MPM P+ VIW SLL   + HGN ++GE  A  LIK+ P   G YV+LSNIYAAA
Sbjct: 484 EEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPGNSGSYVLLSNIYAAA 543

Query: 533 GQWDKVSEVREMMKKRGFRKD-PGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNK 591
           G+W++V+++R ++  +G +K  PG SSIE   V+HEF++GDK HPQ  EI+  L EM   
Sbjct: 544 GRWNEVAKIRALLNDKGMKKKVPGCSSIEIDSVVHEFIIGDKLHPQNREIYGMLEEMEVL 603

Query: 592 LKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCND 651
           L+ AG VPDT++VL  +E++  +E  L +HSE+LAIAFGLI+ K  + + I+KNLRVC +
Sbjct: 604 LEEAGFVPDTSEVLQEMEEE-WREGALRHHSEKLAIAFGLISTKPGTKLTIMKNLRVCKN 662

Query: 652 CHSVTKLLSGIYNREIIVRDNSRFHHFKNGSC 683
           CH  TKL+S IY REII RD +RF HF++G C
Sbjct: 663 CHEATKLISKIYKREIIARDRTRFXHFRDGVC 694



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 118/499 (23%), Positives = 203/499 (40%), Gaps = 151/499 (30%)

Query: 31  SSTHKETQQLHALSVKTNLIYHSGISSRLLSLY--------------VDPHINNLHY--- 73
           S   KE QQ+H   +K        + + L+S+Y              +  H + + Y   
Sbjct: 102 SKIRKEGQQIHGHVLKLGFDLDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTAL 161

Query: 74  ------------ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRF-LLP 120
                       A+ +FD I     +V +N +I  YV      EAL LF +++    + P
Sbjct: 162 IAGYVSRGYIESAQKLFDEI-PGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRP 220

Query: 121 DNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVF 180
           D  T+  V+   A+  +I+ G+ +H  +   GF  +  ++++L+ +Y+KFGE++    +F
Sbjct: 221 DESTMVTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELF 280

Query: 181 DAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDR----------------D 218
           D + +KD++SWN LI GY      + A+ LF EM      P+                 D
Sbjct: 281 DGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAID 340

Query: 219 LFSW--------------------TCLVDGFSKCGKVEIAREIF-YRMPNRNLVSWNAMI 257
           +  W                    T L+D ++KCG ++ A+++F   M NR+L +WNAMI
Sbjct: 341 IGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMI 400

Query: 258 NGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDA 317
           +G+   G  ++A ++F  M                +NG                + P+D 
Sbjct: 401 SGFAMHGRANAAFDIFSRM---------------RMNG----------------IEPDDI 429

Query: 318 TLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAI 377
           T V  LSA +   +L+ GR                                    +FR++
Sbjct: 430 TFVGLLSACSHSGMLDLGR-----------------------------------NIFRSM 454

Query: 378 SK-----KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGL 432
           ++      K+ H+  MI  LG  G+  +A ++ N    M M+P  + +  +L AC   G 
Sbjct: 455 TRGYEITPKLEHYGCMIDLLGHSGLFKEAEEMINT---MPMEPDGVIWCSLLKACKIHGN 511

Query: 433 VNDGRRYFNMMINDYGIEP 451
           +  G  +   +I    IEP
Sbjct: 512 LELGESFAKKLIK---IEP 527


>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  553 bits (1425), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 292/666 (43%), Positives = 412/666 (61%), Gaps = 35/666 (5%)

Query: 26  NILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLS-LYVDPHINNLHYARSIFDRILQH 84
           ++L+ ++   +  Q+HAL +KT+L  ++ + ++LL  L+     N+L YARS+FD I   
Sbjct: 8   SLLQNATKLNQIIQIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVFDEI-PS 66

Query: 85  PSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLP-DNFTLPCVIKGAARLGAIKEGKQ 143
           P   ++N +I+ Y+ +Q   E+++LF  +  +  +P D+++L  VI+   RL     G++
Sbjct: 67  PDTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQK 126

Query: 144 IHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGE 203
           +H  V K+G G D FV ++L+ MYAKF                               G+
Sbjct: 127 LHTQVLKIGLGSDLFVETALIEMYAKF-------------------------------GD 155

Query: 204 VEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKA 263
           +E+A  + DEM   DL  +  L+  + + G++ +A ++F RMP R+LVSWN MI+G+   
Sbjct: 156 IEIARNILDEMAHPDLVPYNVLLAEYVRVGEINLAHDLFDRMPERDLVSWNTMIHGHASL 215

Query: 264 GDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSAL 323
           GDV +A +LFD    RDLI+W+SMIA Y    +  EAL L   M + +VLP+  T+VS L
Sbjct: 216 GDVGTAKKLFDRTCERDLISWSSMIAAYAKARQSNEALRLFHEMQLANVLPDKVTMVSVL 275

Query: 324 SAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVG 383
           SA   +  L  G+ +H  I +N   +D  LGT L+ MY+KCG I+++L VF  ++ + V 
Sbjct: 276 SACGDVGALGMGKMIHECIERNRIEIDLKLGTSLVDMYAKCGDIDNSLRVFNGMNNRDVF 335

Query: 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMM 443
            W+AMI+GL  HG    ALD F+KM    +KP  +TFIGVL+ACSH GLV++G  YF  M
Sbjct: 336 AWSAMIMGLANHGFGELALDHFSKMISEDIKPNDVTFIGVLSACSHIGLVDEGWTYFTSM 395

Query: 444 INDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDI 503
              Y + P IEHYGC+VDIL R G L+EA   I+SMP  P+ ++W +LL   R + N +I
Sbjct: 396 SKVYDVSPKIEHYGCVVDILGRAGRLQEAMELIKSMPFAPDAIVWRALLGACRIYKNVEI 455

Query: 504 GEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRG 563
            E A  NL+++ P   G YV+LSNIY+ A +WDKV  VR MMK    +K PGSSSIE   
Sbjct: 456 AEEATVNLLELEPHVDGNYVLLSNIYSQAKEWDKVVNVRRMMKNINIQKVPGSSSIEVDN 515

Query: 564 VLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSE 623
            +HEFV GD+SHP++ +I   LSE+  +LKA G+ P T  VL    D+KEKE  L +HSE
Sbjct: 516 AVHEFVAGDQSHPESKKILRMLSEITARLKANGYAPLTASVLQDF-DEKEKENALAHHSE 574

Query: 624 RLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSC 683
           +LAIAFGL++    S IRIVKNLRVC+DCH   KL+S  Y R IIVRD +RFHHF NGSC
Sbjct: 575 KLAIAFGLLSTAPGSTIRIVKNLRVCDDCHIAIKLISRTYKRRIIVRDRNRFHHFVNGSC 634

Query: 684 SCKDFW 689
           SCKD+W
Sbjct: 635 SCKDYW 640


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  552 bits (1423), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 282/665 (42%), Positives = 411/665 (61%), Gaps = 43/665 (6%)

Query: 66  PHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTL 125
           PH + L YA S+F+ I Q P+ +++N +I+ +  +     +LTL+  ++   LLP+++T 
Sbjct: 9   PHFDGLPYATSVFETI-QEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTF 67

Query: 126 PCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD 185
           P ++K  A+     EG+QIHG V KLGF  D +V +SL+SMY +   ++   +VFD    
Sbjct: 68  PFLLKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSH 127

Query: 186 KDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM 245
           +D+VS+  LI GY  +G++  A KLFDE+P +D+ SW  ++ G+++ G  + A E+F  M
Sbjct: 128 RDVVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEM 187

Query: 246 ------PN--------------------RNLVSW-------------NAMINGYMKAGDV 266
                 P+                    R + SW             NA+I+ Y K G+V
Sbjct: 188 MKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEV 247

Query: 267 DSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326
           ++AC LF  +  +D+I+WN++I GY     + EAL L + ML     PND T++S L A 
Sbjct: 248 ETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPAC 307

Query: 327 AGLAVLNKGRWMHSYIVK--NGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGH 384
           A L  ++ GRW+H YI K   G      L T LI MY+KCG IE+A  VF ++  K +  
Sbjct: 308 AHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSS 367

Query: 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMI 444
           W AMI G  MHG A  + DLF++M ++G++P  ITF+G+L+ACSH+G+++ GR  F  M 
Sbjct: 368 WNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMT 427

Query: 445 NDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIG 504
            DY + P +EHYGC++D+L  +G  +EA+  I +M M P+ VIW SLL   + HGN ++ 
Sbjct: 428 QDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELA 487

Query: 505 EYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGV 564
           E  A NLIK+ P+    Y++LSNIYA+AG+W+ V+ +R ++  +  +K PG SSIE   V
Sbjct: 488 ESFAQNLIKIEPENPSSYILLSNIYASAGRWEDVARIRALLNGKCMKKVPGCSSIEVDSV 547

Query: 565 LHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSER 624
           + EFVVGDK HPQ  EI+  L EM   L+ AG VPDT++VL  +E++  KE  L +HSE+
Sbjct: 548 VFEFVVGDKFHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEW-KEGALRHHSEK 606

Query: 625 LAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCS 684
           LAIAFGLI+ K  + + IVKNLRVC +CH  TKLLS IY REI+ RD +RFHHF++G CS
Sbjct: 607 LAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLLSKIYKREIVARDRTRFHHFRDGVCS 666

Query: 685 CKDFW 689
           C D+W
Sbjct: 667 CNDYW 671



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 125/517 (24%), Positives = 202/517 (39%), Gaps = 149/517 (28%)

Query: 31  SSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVD--------------PHINNLHY--- 73
           S T  E QQ+H   +K        + + L+S+YV                H + + Y   
Sbjct: 77  SKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTAL 136

Query: 74  ------------ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPD 121
                       A+ +FD I     +V +N +I  Y       EAL LF +++   + PD
Sbjct: 137 ITGYASRGDIRSAQKLFDEI-PVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPD 195

Query: 122 NFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFD 181
             T   V+   A  G+I+ G+Q+H  V   GF  +  ++++L+ +Y+K GE++    +F 
Sbjct: 196 ESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQ 255

Query: 182 AMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDR----------------DL 219
            +  KD++SWN LI GY      + A+ LF EM      P+                 D+
Sbjct: 256 GLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDI 315

Query: 220 FSW-------------------TCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGY 260
             W                   T L+D ++KCG +E A ++F  M +++L SWNAMI G+
Sbjct: 316 GRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGF 375

Query: 261 MKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLV 320
              G  D++ +LF  M                                IG + P+D T V
Sbjct: 376 AMHGRADASFDLFSRMR------------------------------KIG-IEPDDITFV 404

Query: 321 SALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK- 379
             LSA +   +L+ GR                                    +FR++++ 
Sbjct: 405 GLLSACSHSGMLDLGR-----------------------------------HIFRSMTQD 429

Query: 380 ----KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVND 435
                K+ H+  MI  LG  G+  +A ++ N    M M+P  + +  +L AC   G V  
Sbjct: 430 YKMTPKLEHYGCMIDLLGHSGLFKEAEEMINT---MEMEPDGVIWCSLLKACKMHGNVEL 486

Query: 436 GRRYFNMMINDYGIEP-TIEHYGCLVDILCRTGYLEE 471
              +   +I    IEP     Y  L +I    G  E+
Sbjct: 487 AESFAQNLIK---IEPENPSSYILLSNIYASAGRWED 520


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  552 bits (1422), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 279/723 (38%), Positives = 430/723 (59%), Gaps = 43/723 (5%)

Query: 9   SSPIHALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHI 68
           S+P      +  SR   +++   S+ ++ +Q HA  ++T +      +S+L ++      
Sbjct: 19  SNPNQPTTNNERSRHTISLIDRCSSLRQLKQTHAHMIRTGMFSDPYSASKLFAIAALSSF 78

Query: 69  NNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL--DRFLLPDNFTLP 126
            +L YAR +FD I Q P+   +N LI+ Y        ++  F D++  +    P+ +T P
Sbjct: 79  ASLEYARKVFDEIPQ-PNSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTFP 137

Query: 127 CVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK 186
            +IK AA + ++  G+ +HG+  K   G D FV +SL+  Y   G++D   +VF  + +K
Sbjct: 138 FLIKAAAEVSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEK 197

Query: 187 DLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRD---------------------------- 218
           D+VSWN +I+G+V+KG  + A++LF +M   D                            
Sbjct: 198 DVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVC 257

Query: 219 -----------LFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVD 267
                      L     ++D ++KCG +E A+ +F  M  ++ V+W  M++GY  + D +
Sbjct: 258 SYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYE 317

Query: 268 SACELFDDMEIRDLITWNSMIAGYELNGRFMEALELL-ETMLIGDVLPNDATLVSALSAV 326
           +A E+ + M  +D++ WN++I+ YE NG+  EAL +  E  L  ++  N  TLVS LSA 
Sbjct: 318 AAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSAC 377

Query: 327 AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWT 386
           A +  L  GRW+HSYI KNG  ++  + + LI MYSKCG +E A  VF ++ K+ V  W+
Sbjct: 378 AQVGALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVWS 437

Query: 387 AMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIND 446
           AMI GL MHG  ++A+D+F KM    +KP  +TF  V  ACSH GLV++    F  M + 
Sbjct: 438 AMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFYKMESS 497

Query: 447 YGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEY 506
           YGI P  +HY C+VD+L R+GYLE+A   IE+MP+ P+  +W +LL   + H N  + E 
Sbjct: 498 YGIVPEDKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLSLAEM 557

Query: 507 AANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLH 566
           A   L+++ P   G +V+LSNIYA +G+WD VSE+R+ M+  G +K+PG SSIE  G++H
Sbjct: 558 ACTRLLELEPRNDGAHVLLSNIYAKSGKWDNVSELRKHMRVTGLKKEPGCSSIEIDGMIH 617

Query: 567 EFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLA 626
           EF+ GD +HP +++++ KL E+  KLK+ G+ P+ + VL  IE+++ KE  L  HSE+LA
Sbjct: 618 EFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEMSHVLQIIEEEEMKEQSLNLHSEKLA 677

Query: 627 IAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCK 686
           I +GLI+ ++   IR++KNLR+C DCH+V KL+S +YNREIIVRD  RFHHF+NG CSC 
Sbjct: 678 ICYGLISTEAPKAIRVIKNLRMCGDCHAVAKLISQLYNREIIVRDRYRFHHFRNGQCSCN 737

Query: 687 DFW 689
           DFW
Sbjct: 738 DFW 740


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  552 bits (1422), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 293/702 (41%), Positives = 428/702 (60%), Gaps = 44/702 (6%)

Query: 26  NILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYV-DPHINNLHYARSIFDRILQH 84
           ++L    T +  + +HA  +KT L   +   S+L+   V  PH + L YA S+FD I Q 
Sbjct: 7   SLLHNCKTLQSLRIIHAKMIKTGLHNTNYALSKLIEFSVLSPHFDGLTYAISVFDSI-QE 65

Query: 85  PSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQI 144
           P+L+++N + + +  +     AL L+  ++   L+P+++T P ++K  A+  A +EG+QI
Sbjct: 66  PNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFREGQQI 125

Query: 145 HGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEV 204
           HG V KLG   D +V +SL++MY K G  +  R+VFD    +D+VS+  LI GY   G +
Sbjct: 126 HGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNGYI 185

Query: 205 EVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM------PN----------- 247
             A K+FDE+P +D+ SW  L+ G+++ G  + A E+F  M      P+           
Sbjct: 186 XSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSAC 245

Query: 248 ---------RNLVSW-------------NAMINGYMKAGDVDSACELFDDMEIRDLITWN 285
                    R + SW             NA+I+ Y+K G+V++A  LF+ +  +D+I+WN
Sbjct: 246 AQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWN 305

Query: 286 SMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVK- 344
           ++I GY     + EAL L + ML     PN+ T++S L A A L  ++ GRW+H YI K 
Sbjct: 306 TLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKR 365

Query: 345 -NGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALD 403
             G      L T LI MY+KCG IE+A  VF ++  + +  W AMI G  MHG A  A D
Sbjct: 366 LKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFD 425

Query: 404 LFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDIL 463
           +F++M + G++P  ITF+G+L+ACSH+G+++ GR  F  M  DY I P +EHYGC++D+L
Sbjct: 426 IFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITPKLEHYGCMIDLL 485

Query: 464 CRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYV 523
             +G  +EA+  I SM M P+ VIW SLL   + HGN ++GE  A NLIK+ P   G YV
Sbjct: 486 GHSGLFKEAEEMINSMEMDPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPKNSGSYV 545

Query: 524 VLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHS 583
           +LSNIYA AG+W++V++ R ++  +G +K PG SSIE   V+HEF++GDK HP+  EI+ 
Sbjct: 546 LLSNIYATAGRWNEVAKRRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKLHPRNREIYG 605

Query: 584 KLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIV 643
            L EM   L+ AG VPDT++VL  +E++  KE  L +HSE+LAIAFGLI+ K  + + IV
Sbjct: 606 MLEEMEVLLEEAGFVPDTSEVLQEMEEE-WKEGALRHHSEKLAIAFGLISTKPGTKLTIV 664

Query: 644 KNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSC 685
           KNLRVC +CH  TKL+S IY REII RD +RFHHF +G CSC
Sbjct: 665 KNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFXDGVCSC 706



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 50/231 (21%), Positives = 102/231 (44%), Gaps = 13/231 (5%)

Query: 322 ALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQ---MYSKCGSIESALTVFRAIS 378
           +LS +     L   R +H+ ++K G        + LI+   +      +  A++VF +I 
Sbjct: 5   SLSLLHNCKTLQSLRIIHAKMIKTGLHNTNYALSKLIEFSVLSPHFDGLTYAISVFDSIQ 64

Query: 379 KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR 438
           +  +  W  M  G  +      AL L+  M  +G+ P + TF  +L AC+ +    +G++
Sbjct: 65  EPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFREGQQ 124

Query: 439 YFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNH 498
               ++   G +  +  +  L+ +  + G  E+A+   +    R + V + +L+ G  ++
Sbjct: 125 IHGHVLK-LGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHR-DVVSYTALIKGYASN 182

Query: 499 GNKDIGEYAANNLIKVAP--DTIGCYVVLSNIYAAAGQWDKVSEV-REMMK 546
           G       +A  +    P  D +    ++S  YA  G + +  E+ +EMMK
Sbjct: 183 GYI----XSAQKMFDEIPVKDVVSWNALISG-YAETGNYKEALELFKEMMK 228


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  551 bits (1419), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 300/722 (41%), Positives = 429/722 (59%), Gaps = 48/722 (6%)

Query: 11  PIHALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINN 70
           P   L+QH     + N+L+        +Q+H+L +KT L     + S+L+         +
Sbjct: 22  PYKILEQHP----YLNLLEKCKNINTFKQIHSLIIKTGLNNTVFVQSKLIHFCAVSPSGD 77

Query: 71  LHYARSIFDRILQHP--SLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCV 128
           L YA S+F+   QH   ++ ++N LI+ Y  +     +L LF  +L   + P++ T P +
Sbjct: 78  LSYALSLFEENQQHHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFL 137

Query: 129 IKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDL 188
            K   +  A  EGKQ+H    KL   F+  V +S++ MYA  GE+D  R VFD    +D 
Sbjct: 138 FKSCTKAKATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDA 197

Query: 189 VSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM--- 245
           VS+  LI GYV +G ++ A +LFDE+P +D+ SW  ++ G+ + G+ E A   FY M   
Sbjct: 198 VSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEA 257

Query: 246 ---PNRNLV--------------------SW-------------NAMINGYMKAGDVDSA 269
              PN++ +                    SW             NA+I+ Y K G+ D A
Sbjct: 258 NVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIA 317

Query: 270 CELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGL 329
            ELFD +E +D+I+WN+MI GY     + EAL L E ML  +V PND T +  L A A L
Sbjct: 318 RELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHACACL 377

Query: 330 AVLNKGRWMHSYIVKN-GFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAM 388
             L+ G+W+H+YI KN     +  L T LI MY+KCG IE+A  VFR++  + +  W AM
Sbjct: 378 GALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNLASWNAM 437

Query: 389 IVGLGMHGMATQALDLFNKMCRMGM-KPTAITFIGVLNACSHAGLVNDGRRYFNMMINDY 447
           + G  MHG A +AL LF++M   G+ +P  ITF+GVL+AC+ AGLV+ G +YF  MI DY
Sbjct: 438 LSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGLVDLGHQYFRSMIQDY 497

Query: 448 GIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYA 507
           GI P ++HYGC++D+L R    EEA+  +++M M P+  IW SLLS  + HG  + GEY 
Sbjct: 498 GISPKLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGAIWGSLLSACKAHGRVEFGEYV 557

Query: 508 ANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHE 567
           A  L ++ P+  G +V+LSNIYA AG+WD V+ +R  +  +G +K PG +SIE  G +HE
Sbjct: 558 AERLFQLEPENAGAFVLLSNIYAGAGRWDDVARIRTRLNDKGMKKVPGCTSIEIDGDVHE 617

Query: 568 FVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAI 627
           F+VGDK HP+ + I+  L+E+   L+  G VP+T++VL  + D++ KE  L  HSE+LAI
Sbjct: 618 FLVGDKFHPECNNIYKMLNEVDKLLEENGFVPNTSEVLYDM-DEEWKEGALSQHSEKLAI 676

Query: 628 AFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKD 687
           +FGLI  K  + IRIVKNLRVC +CHS TKL+S I+NREII RD +RFHHFK+G CSC D
Sbjct: 677 SFGLIKTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGFCSCND 736

Query: 688 FW 689
            W
Sbjct: 737 CW 738


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  549 bits (1414), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 291/732 (39%), Positives = 432/732 (59%), Gaps = 49/732 (6%)

Query: 1   MQTQTLQHSSPIHALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNL-IYHSGISSRL 59
           +Q  +    SP + L    PS     +L    T +  +Q+H+  +KT L   H  +S  +
Sbjct: 11  LQVLSFSDPSPPYKLVHDHPS---LTLLSNCKTLQTLKQIHSQIIKTGLHNTHFALSKLI 67

Query: 60  LSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLL 119
               V PH  +L YA S+F + +++P+ V++N +I+    ++    AL  +  ++     
Sbjct: 68  EFCAVSPH-GDLSYALSLF-KTIRNPNHVIWNHMIRGLSSSESPFLALEYYVHMISSGTE 125

Query: 120 PDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRV 179
           P+ +T P + K   ++    EGKQ+H  V KLG   + FV +SL++MYA+ GE+   R V
Sbjct: 126 PNEYTFPSIFKSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLV 185

Query: 180 FDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAR 239
           FD    +D VS+  LI GY  KG ++ A +LFDE+P RD+ SW  ++ G+++ G+VE A 
Sbjct: 186 FDKSSMRDAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAM 245

Query: 240 EIFYRM------PNRNLV---------------------SW-------------NAMING 259
             F  M      PN + +                     SW             N +I+ 
Sbjct: 246 AFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDM 305

Query: 260 YMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATL 319
           Y+K GD++ A  LF+ ++ +++++WN MI GY     + EAL L   M+  ++ PND T 
Sbjct: 306 YVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTF 365

Query: 320 VSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV--LGTLLIQMYSKCGSIESALTVFRAI 377
           +S L A A L  L+ G+W+H+Y+ KN   +     L T LI MY+KCG +  A  +F  +
Sbjct: 366 LSILPACANLGALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCM 425

Query: 378 SKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGR 437
           + K +  W AMI G  MHG    AL LF++M   G  P  ITF+GVL AC HAGL++ GR
Sbjct: 426 NTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLGR 485

Query: 438 RYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARN 497
           RYF+ MI DY + P + HYGC++D+  R G  +EA++ +++M M+P+  IW SLL   R 
Sbjct: 486 RYFSSMIQDYKVSPKLPHYGCMIDLFGRAGLFDEAETLVKNMEMKPDGAIWCSLLGACRI 545

Query: 498 HGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSS 557
           H   ++ E  A +L ++ P+    YV+LSNIYA AG+W+ V+++R  +     +K PG S
Sbjct: 546 HRRIELAESVAKHLFELEPENPSAYVLLSNIYAGAGRWEDVAKIRTRLNDNRMKKVPGCS 605

Query: 558 SIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAE 617
           SIE   V+HEF+VGDK HPQ++EI+  L E+  +L+ AG VPDT++VL  + D++ KE  
Sbjct: 606 SIEVDSVVHEFLVGDKVHPQSNEIYKMLDEIDMRLEKAGFVPDTSEVLYDM-DEEWKEGV 664

Query: 618 LENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHH 677
           L +HSE+LAIAFGLI+ K  + IRI+KNLRVC +CHS TKL+S I+NREII RD +RFHH
Sbjct: 665 LSHHSEKLAIAFGLISTKPGTTIRIMKNLRVCGNCHSATKLISKIFNREIIARDRNRFHH 724

Query: 678 FKNGSCSCKDFW 689
           FK+GSCSCKD+W
Sbjct: 725 FKDGSCSCKDYW 736


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 283/692 (40%), Positives = 414/692 (59%), Gaps = 45/692 (6%)

Query: 41  HALSVKTNLIYHSGISSRLLSL-YVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVF 99
           HA  VKT L   +   S+LL L  V PH + L YA S+F+   Q P+L+++N +++    
Sbjct: 2   HAQMVKTGLHNTNYALSKLLELCVVSPHFDGLPYAVSVFE-TXQEPNLLIWNTMLRGLAS 60

Query: 100 NQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFV 159
           +      L ++  ++    +P+ +T P ++K  A+    +EG+QIH  V KLG   D++ 
Sbjct: 61  SSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYA 120

Query: 160 LSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL 219
            +SL+SMYA+ G ++  R+VFD    +D+VS   LI GY  +G+V  A K+FD + +RD+
Sbjct: 121 HTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDV 180

Query: 220 FSWTCLVDGF-----------------------------------SKCGKVEIAREIFYR 244
            SW  ++ G+                                   ++ G +E+ REI   
Sbjct: 181 VSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHTL 240

Query: 245 MPNR-----NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFME 299
           + +      +L   NA I  Y K GDV+ A  LF+ +  +D+++WN++I GY     + E
Sbjct: 241 VDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKE 300

Query: 300 ALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVK--NGFVVDGVLGTLL 357
           AL L + ML     PND T++S L A A L  ++ GRW+H YI K   G      L T L
Sbjct: 301 ALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSL 360

Query: 358 IQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA 417
           I MY+KCG IE+A  VF ++  K +  W AMI G  MHG A  A DLF++M + G++P  
Sbjct: 361 IDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDD 420

Query: 418 ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIE 477
           IT +G+L+ACSH+GL++ GR  F  +  DY I P +EHYGC++D+L   G  +EA+  I 
Sbjct: 421 ITLVGLLSACSHSGLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEIIH 480

Query: 478 SMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDK 537
            MPM P+ VIW SLL   + HGN ++ E  A  L+++ P+  G YV+LSNIYA AG+W+ 
Sbjct: 481 MMPMEPDGVIWCSLLKACKMHGNLELAESFAQKLMEIEPENSGSYVLLSNIYATAGRWED 540

Query: 538 VSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGH 597
           V+ +RE++  +G +K PG SSIE   V+HEF++GDK HPQ+ EI+  L EM   L+ AG 
Sbjct: 541 VARIREVLNGKGMKKVPGCSSIEIDSVVHEFIIGDKLHPQSREIYRMLEEMDVLLEEAGF 600

Query: 598 VPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTK 657
           VPDT++VL  +E++  KE  L +HSE+LAIAFGLI+ K  + + +VKNLRVC +CH  TK
Sbjct: 601 VPDTSEVLQEMEEEW-KEGALRHHSEKLAIAFGLISTKPGTKLTVVKNLRVCRNCHEATK 659

Query: 658 LLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           L+S IY REI+ RD +RFHHF++G CSC D+W
Sbjct: 660 LISKIYKREIVARDRTRFHHFRDGVCSCCDYW 691


>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Glycine max]
          Length = 638

 Score =  548 bits (1411), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 288/671 (42%), Positives = 410/671 (61%), Gaps = 51/671 (7%)

Query: 22  RLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRI 81
           RL    +K   + +E +Q+HA  VKT   + + I++ +L L       ++ YA S+FD++
Sbjct: 16  RLDVPQIKACKSMRELKQVHAFLVKTGQTHDNAIATEILRLSATSDFRDIGYALSVFDQL 75

Query: 82  LQHPSLVLYNLLIKCYVFNQRSH-EALTLFCDLLDRFLL-PDNFTLPCVIKGAARLGAIK 139
            +      +N +I+     Q  H +AL +FC +L    + P+ FT P V+K  A +  + 
Sbjct: 76  PERNCFA-WNTVIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKACAVMARLA 134

Query: 140 EGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYV 199
           EGKQ+HGL+ K G   D+FV+++L+ M                               YV
Sbjct: 135 EGKQVHGLLLKFGLVDDEFVVTNLLRM-------------------------------YV 163

Query: 200 KKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMING 259
             G +E A  LF        +     VD      + E  RE        N+V  N M++G
Sbjct: 164 MCGSMEDANVLF--------YRNVEGVDDVRNLVRDERGREF-------NVVLCNVMVDG 208

Query: 260 YMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETML-IGDVLPNDAT 318
           Y + G++ +A ELFD M  R +++WN MI+GY  NG + EA+E+   M+ +GDVLPN  T
Sbjct: 209 YARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRMMQMGDVLPNRVT 268

Query: 319 LVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS 378
           LVS L A++ L VL  G+W+H Y  KN   +D VLG+ L+ MY+KCGSIE A+ VF  + 
Sbjct: 269 LVSVLPAISRLGVLELGKWVHLYAEKNKIRIDDVLGSALVDMYAKCGSIEKAIQVFERLP 328

Query: 379 KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR 438
           +  V  W A+I GL MHG A    +  ++M + G+ P+ +T+I +L+ACSHAGLV++GR 
Sbjct: 329 QNNVITWNAVIGGLAMHGKANDIFNYLSRMEKCGISPSDVTYIAILSACSHAGLVDEGRS 388

Query: 439 YFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNH 498
           +FN M+N  G++P IEHYGC+VD+L R GYLEEA+  I +MPM+P+ VIW +LL  ++ H
Sbjct: 389 FFNDMVNSVGLKPKIEHYGCMVDLLGRAGYLEEAEELILNMPMKPDDVIWKALLGASKMH 448

Query: 499 GNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSS 558
            N  IG  AA  L+++AP   G YV LSN+YA++G WD V+ VR MMK    RKDPG S 
Sbjct: 449 KNIKIGMRAAEVLMQMAPHDSGAYVALSNMYASSGNWDGVAAVRLMMKDMDIRKDPGCSW 508

Query: 559 IEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAEL 618
           IE  GV+HEF+V D SH +  +IHS L E+ NKL   GH+PDTTQVLL + D+K KE+ L
Sbjct: 509 IEIDGVIHEFLVEDDSHSRAKDIHSMLEEISNKLSLEGHMPDTTQVLLKM-DEKHKESVL 567

Query: 619 ENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHF 678
             HSE++A+AFGLI+   ++P+ IVKNLR+C DCHS  KL+S +Y R+I++RD  RFHHF
Sbjct: 568 HYHSEKIAVAFGLISTPPKTPLCIVKNLRICEDCHSSMKLISKMYERKIVIRDRKRFHHF 627

Query: 679 KNGSCSCKDFW 689
           ++GSCSC D+W
Sbjct: 628 EHGSCSCMDYW 638


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  543 bits (1398), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 276/722 (38%), Positives = 431/722 (59%), Gaps = 43/722 (5%)

Query: 9   SSPIHALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHI 68
           S+P      +  SR H ++++   + ++ +Q H   ++T        +S+L ++      
Sbjct: 19  SNPNQPTTNNERSR-HISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSF 77

Query: 69  NNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL-DRFLLPDNFTLPC 127
            +L YAR +FD I + P+   +N LI+ Y        ++  F D++ +    P+ +T P 
Sbjct: 78  ASLEYARKVFDEIPK-PNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPF 136

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD 187
           +IK AA + ++  G+ +HG+  K   G D FV +SL+  Y   G++D   +VF  + +KD
Sbjct: 137 LIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKD 196

Query: 188 LVSWNCLIDGYVKKGEVEVAMKLFDEMPDRD----------------------------- 218
           +VSWN +I+G+V+KG  + A++LF +M   D                             
Sbjct: 197 VVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCS 256

Query: 219 ----------LFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDS 268
                     L     ++D ++KCG +E A+ +F  M  ++ V+W  M++GY  + D ++
Sbjct: 257 YIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEA 316

Query: 269 ACELFDDMEIRDLITWNSMIAGYELNGRFMEALELL-ETMLIGDVLPNDATLVSALSAVA 327
           A E+ + M  +D++ WN++I+ YE NG+  EAL +  E  L  ++  N  TLVS LSA A
Sbjct: 317 AREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACA 376

Query: 328 GLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTA 387
            +  L  GRW+HSYI K+G  ++  + + LI MYSKCG +E +  VF ++ K+ V  W+A
Sbjct: 377 QVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSA 436

Query: 388 MIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDY 447
           MI GL MHG   +A+D+F KM    +KP  +TF  V  ACSH GLV++    F+ M ++Y
Sbjct: 437 MIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNY 496

Query: 448 GIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYA 507
           GI P  +HY C+VD+L R+GYLE+A   IE+MP+ P+  +W +LL   + H N ++ E A
Sbjct: 497 GIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMA 556

Query: 508 ANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHE 567
              L+++ P   G +V+LSNIYA  G+W+ VSE+R+ M+  G +K+PG SSIE  G++HE
Sbjct: 557 CTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHE 616

Query: 568 FVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAI 627
           F+ GD +HP +++++ KL E+  KLK+ G+ P+ +QVL  IE+++ KE  L  HSE+LAI
Sbjct: 617 FLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAI 676

Query: 628 AFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKD 687
            +GLI+ ++   IR++KNLRVC DCHSV KL+S +Y+REIIVRD  RFHHF+NG CSC D
Sbjct: 677 CYGLISTEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCND 736

Query: 688 FW 689
           FW
Sbjct: 737 FW 738


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  542 bits (1397), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 285/730 (39%), Positives = 429/730 (58%), Gaps = 50/730 (6%)

Query: 6   LQHSSPI--HALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLY 63
           +QHSSP    A   ++  R    + +  ++ K+ +Q+HA  ++TN ++    +S L +  
Sbjct: 125 VQHSSPTPASATATNVGDRA---LFQQCTSFKQLKQIHAQMLRTNKLHDPYAASELFTAA 181

Query: 64  VDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL-DRFLLPDN 122
                + L YAR +FD+I Q P+L  +N+LI+    +    +++ +F  +L D    P+ 
Sbjct: 182 AFSSFSALDYARKVFDQIPQ-PNLYSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNK 240

Query: 123 FTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDA 182
           FT P +IK  A       GK +HG+  K  FG D FVL+SL+  YA  G +DL   VF+ 
Sbjct: 241 FTFPVLIKAVAERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEM 300

Query: 183 MD--DKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR----------------------- 217
           ++  +KD+VSWN ++ G+V+ G  + A+ LF+ M +                        
Sbjct: 301 IEGNNKDIVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLT 360

Query: 218 ----------------DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYM 261
                           +L      +D F KCG+VEIAR +F  M  R++VSW  +I+GY 
Sbjct: 361 LGRKVCDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYA 420

Query: 262 KAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLI--GDVLPNDATL 319
           K  +   A ++FD M  +D+  WN +I+GYE +GR  EAL +   + +      P+  TL
Sbjct: 421 KMSEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTL 480

Query: 320 VSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK 379
           +S LSA A L  ++ G W+H YI K    ++  L T LI MYSK G +E A+ VF +I  
Sbjct: 481 LSTLSACAQLGAMDIGEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGN 540

Query: 380 KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRY 439
           K V  W+AMI GL MHG    A++LF  M    +KP ++TF  +L ACSH+GLV++G+R 
Sbjct: 541 KDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRL 600

Query: 440 FNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
           F+ M   YG+ P  +HY C+VD+L R G+LEEA   IE MP+ P+  +W +LL     HG
Sbjct: 601 FDEMERVYGVVPKTKHYSCMVDVLGRAGHLEEALKFIEGMPLAPSASVWGALLGACCIHG 660

Query: 500 NKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSI 559
           N ++ E A + L+++ P   G YV+LSN+YA  G W+ VSE+R+ M+  G +K+ G SSI
Sbjct: 661 NLELAEKACSRLLEIEPGNHGAYVLLSNLYAKTGDWEGVSELRQQMRDSGLKKETGCSSI 720

Query: 560 EHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELE 619
           E  G +HEF+VGD +HP + +I++KL E+  +L++ G+V +T  +L  +E+++ KE  L+
Sbjct: 721 EIDGTVHEFIVGDNAHPLSRDIYAKLDEIMARLRSHGYVANTLCMLQFVEEEEMKEKALK 780

Query: 620 NHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFK 679
            HSE++AIAFGLI   S+  IRIVKNLRVC DCH+V K++S +Y R+I++RD  RFHHF 
Sbjct: 781 LHSEKMAIAFGLIRADSQQAIRIVKNLRVCRDCHTVAKMVSKVYGRDIVLRDRYRFHHFS 840

Query: 680 NGSCSCKDFW 689
            G CSC+D+W
Sbjct: 841 GGHCSCQDYW 850


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  542 bits (1396), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 282/667 (42%), Positives = 407/667 (61%), Gaps = 43/667 (6%)

Query: 64  VDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNF 123
           + PH + L YA SIF+ I Q P+L+++N + + +  N  S  AL L+  ++   LLP+++
Sbjct: 8   LSPHFDGLSYAISIFETI-QEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSY 66

Query: 124 TLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAM 183
           + P ++K  A+  A+ EG+QIHG V KLG+  D +V +SL+SMYA+ G ++   +VFD  
Sbjct: 67  SFPFLLKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRS 126

Query: 184 DDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFY 243
             + +VS+  LI GY  +G +  A KLFDE+  +D+ SW  ++ G+ +    + A E++ 
Sbjct: 127 SHRHVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYK 186

Query: 244 RM------PN--------------------RNLVSW-------------NAMINGYMKAG 264
            M      P+                    R L SW             N +I+ Y K G
Sbjct: 187 DMMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCG 246

Query: 265 DVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS 324
           +V++AC LF  +  +D+I+WN++I G+     + EAL L + ML     PND T++S L 
Sbjct: 247 EVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLP 306

Query: 325 AVAGLAVLNKGRWMHSYIVK--NGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKV 382
           A A L  ++ GRW+H YI K   G      L T LI MY+KCG IE+A  VF ++  + +
Sbjct: 307 ACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSL 366

Query: 383 GHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNM 442
             W AMI G  MHG A  A DLF+KM + G+ P  ITF+G+L+ACSH+G+++ GR  F  
Sbjct: 367 SSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRS 426

Query: 443 MINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKD 502
           M  DY I P +EHYGC++D+L   G  +EAK  I +MPM P+ VIW SLL   + H N +
Sbjct: 427 MSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMHNNVE 486

Query: 503 IGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHR 562
           +GE  A NLIK+ P+  G YV+LSNIYA AG+WD+V+++R ++  +G +K PG SSIE  
Sbjct: 487 LGESYAQNLIKIEPENPGSYVLLSNIYATAGRWDQVAKIRTLLNDKGIKKAPGCSSIEID 546

Query: 563 GVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHS 622
            V+HEF++GDK HP+  EI+  L EM   ++  G VPDT++VL  +E++  KE  L +HS
Sbjct: 547 SVVHEFIIGDKFHPRNREIYRMLEEMEMLMEETGFVPDTSEVLQEMEEE-WKEGALRHHS 605

Query: 623 ERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGS 682
           E+LAIAFGLI+ K  + + IVKNLRVC +CH  TKL+S IY REII RD +R H  K+G 
Sbjct: 606 EKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRLHLLKDGV 665

Query: 683 CSCKDFW 689
            SC D+W
Sbjct: 666 WSCHDYW 672


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 286/676 (42%), Positives = 421/676 (62%), Gaps = 16/676 (2%)

Query: 28  LKFSSTH----KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQ 83
           + F  TH     +T+Q HAL ++T+L+++   SS+L+S     H  +L+YAR +F + +Q
Sbjct: 14  VDFLKTHCTSISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQ-MQ 72

Query: 84  HPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQ 143
           +P   + N +I+ Y  +Q  +EA++L+  +++R +  DN+T P V+   ARLGA+K G++
Sbjct: 73  NPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRR 132

Query: 144 IHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGE 203
            H  V K GFG D FV+++L+  Y   G       VFD    +D+V+WN +I+ ++ KG 
Sbjct: 133 FHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGL 192

Query: 204 VEVAMKLFDEMPD-----RDLFSWTCLVDGFSKCGKVEIAREIFYRMP----NRNLVSWN 254
            E A  L DEM        D  +   LV   ++ G +E  + +         + NL   N
Sbjct: 193 SEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELGLDENLRVNN 252

Query: 255 AMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLP 314
           A+++ Y K  D++SA E+F+ +  +D+++W SM++G   +G F EAL L + M +  +  
Sbjct: 253 AILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIEL 312

Query: 315 NDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVF 374
           ++ TLV  LSA A    L++G+++H  I K     D VL T L+ MY+KCGSI+ AL VF
Sbjct: 313 DEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVF 372

Query: 375 RAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVN 434
           R +  + V  W A+I GL MHG    A+ LF++M    + P  +TFI +L ACSHAGLV+
Sbjct: 373 RRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVD 432

Query: 435 DGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG 494
           +G   F  M N + IEP +EHYGC+VD+LCR   +++A + IE+MP++ N V+W +LL  
Sbjct: 433 EGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGA 492

Query: 495 ARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDP 554
            R+ G+ D+ E     +I++ PD+ G YV+LSN+YA   QWD   ++R+ MK +G  K P
Sbjct: 493 CRSGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTP 552

Query: 555 GSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKA-AGHVPDTTQVLLCIEDQKE 613
           G S IE  G++H+FV GD+SH QT++I++ + EM  ++    GHVP T  VL  IE++ E
Sbjct: 553 GCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTRRVNLDGGHVPGTANVLFDIEEE-E 611

Query: 614 KEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNS 673
           KE  L  HSE+LAIA GLI+  S SPIRIVKNLRVCNDCHS  K+ S +YNREI+ RD S
Sbjct: 612 KEHSLFLHSEKLAIALGLISTPSGSPIRIVKNLRVCNDCHSFLKVTSKVYNREIVARDRS 671

Query: 674 RFHHFKNGSCSCKDFW 689
           RFHHFK GSCSC DFW
Sbjct: 672 RFHHFKEGSCSCMDFW 687


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 278/661 (42%), Positives = 410/661 (62%), Gaps = 33/661 (4%)

Query: 29  KFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLV 88
           K S++    +Q+HA++++T       +S  L+  Y +PH +NL++A  +F+ +  +P++ 
Sbjct: 38  KSSTSLHHLKQVHAVALRTGHFQDHYVSGTLVKCYANPHFSNLNFALKVFEYV-PNPNVF 96

Query: 89  LYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLV 148
           ++N++IK  + N    +A+  +  ++     P+ FT P + K      A +EG Q+H  V
Sbjct: 97  VFNIIIKGCLQNNEPCKAICCYYKMMIAHARPNKFTYPTLFKACTAAEAAEEGVQVHAHV 156

Query: 149 FKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAM 208
            K G   D  + S+ + MY  FGE                               VE A 
Sbjct: 157 IKQGLSGDVHIRSAGIQMYGSFGE-------------------------------VEGAR 185

Query: 209 KLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDS 268
           ++  E  + D+  +  ++DG+ KCG+VE A+E+F+ M ++N+ SWN M++G  K G ++ 
Sbjct: 186 RMLGEDGNSDVICFNAMIDGYLKCGEVEAAKELFWSMEDKNVGSWNVMVSGMAKCGMIEE 245

Query: 269 ACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAG 328
           A ELF++M+ ++ I+W++MI GY   G + EALE+   M   ++ P    L S L+A A 
Sbjct: 246 ARELFNEMKEKNEISWSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACAN 305

Query: 329 LAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAM 388
           L  L++GRW+H+Y+  N    D VLGT L+ MY+KCG ++ A  VF  + KK+V  W AM
Sbjct: 306 LGALDQGRWIHAYVNNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKMEKKEVFTWNAM 365

Query: 389 IVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYG 448
           I GLGMHG A  A++LF KM +   +P  IT +GVL+AC+H+G+V++G R FN M   YG
Sbjct: 366 ICGLGMHGRAEDAIELFFKMQKQKFRPNGITLLGVLSACAHSGMVDEGLRIFNSMEEVYG 425

Query: 449 IEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAA 508
           IEP +EHYGC+VD+L R G L EA+  + SMPM P+  +W +LL   R HG+ ++GE   
Sbjct: 426 IEPGMEHYGCVVDLLGRAGLLGEAEEVMYSMPMEPSAAVWGALLGACRKHGDVELGERVG 485

Query: 509 NNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEF 568
             L+++ P   G Y +LSNIYA AG+WD V+ VR++MK+RG +   G S I+  GV+HEF
Sbjct: 486 KILLELEPQNSGRYALLSNIYARAGRWDDVANVRKLMKERGVKTSTGISMIDFDGVVHEF 545

Query: 569 VVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIA 628
            +GD SHPQ   I+  L  M  +LK  G  P+T+QVL  IE ++EKEAEL+ HSE+LAIA
Sbjct: 546 KMGDGSHPQMKNIYLMLKNMIKRLKMEGFSPNTSQVLFDIE-EEEKEAELQYHSEKLAIA 604

Query: 629 FGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDF 688
           FGLIN K  + I +VKNLR+C DCHS  KL+S +Y+REIIVRD +R+HHFK G+CSCKDF
Sbjct: 605 FGLINTKPGTTIHVVKNLRMCEDCHSAFKLISQVYDREIIVRDRARYHHFKTGTCSCKDF 664

Query: 689 W 689
           W
Sbjct: 665 W 665


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  540 bits (1391), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 287/670 (42%), Positives = 417/670 (62%), Gaps = 13/670 (1%)

Query: 28  LKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSL 87
           L+  +T  + +Q+HA  ++T L      +S++++        +L YAR +F++I  +P+ 
Sbjct: 47  LEKCTTMSQLKQIHAQMLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFNQI-PNPTT 105

Query: 88  VLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGL 147
              N +I+ Y       +A+  +  ++ + L PD FT P + K     G + EGKQ+H  
Sbjct: 106 FTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSC---GVLCEGKQLHCH 162

Query: 148 VFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVA 207
             KLGF  D ++ ++L++MY+  G +   R+VFD M +K +VSW  +I  Y +      A
Sbjct: 163 STKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEA 222

Query: 208 MKLFDEMPDRDL-FSWTCLVDGFSKCGK---VEIAREIFYRMPNRNL----VSWNAMING 259
           +KLF  M    +  +   LV+  + C +   +E A+++   +    +    V  +A+++ 
Sbjct: 223 IKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVLTSALMDV 282

Query: 260 YMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATL 319
           Y K G    A +LF+ M  ++L  WN MI G+  +  + EAL L   M +  V  +  T+
Sbjct: 283 YCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTM 342

Query: 320 VSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK 379
            S L A   L  L  G+W+H YI K    VD  LGT L+ MY+KCGSIESA+ VF+ + +
Sbjct: 343 ASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPE 402

Query: 380 KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRY 439
           K V  WTA+IVGL M G   +AL+LF++M    +KP AITF+GVL ACSHAGLVN+G  Y
Sbjct: 403 KDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAY 462

Query: 440 FNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
           FN M N YGI+P+IEHYGC+VD+L R G + EA+  I++MPM P++ + + LLS  R HG
Sbjct: 463 FNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHG 522

Query: 500 NKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSI 559
           N  + E AA  LI++ P   G YV+LSNIY++   W+   ++RE+M +R  +K PG S+I
Sbjct: 523 NLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCSAI 582

Query: 560 EHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELE 619
           E  GV+HEFV GD SHPQ+ EI+  L +M  +LK+AG+VPD ++VL  + D+KEKE EL 
Sbjct: 583 EVGGVVHEFVKGDVSHPQSSEIYETLDDMMRRLKSAGYVPDKSEVLFDM-DEKEKENELS 641

Query: 620 NHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFK 679
            HSE+LAIAFGL++    +PIR+VKNLRVC+DCHS  K +S +YNREIIVRD +RFHHF 
Sbjct: 642 LHSEKLAIAFGLLSTTPGTPIRVVKNLRVCSDCHSAMKFISEVYNREIIVRDRNRFHHFT 701

Query: 680 NGSCSCKDFW 689
            GSCSC+DFW
Sbjct: 702 KGSCSCRDFW 711


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 290/730 (39%), Positives = 417/730 (57%), Gaps = 73/730 (10%)

Query: 12  IHALQQHLPSRLHWNILKFS-----------STHKETQQLHALSVKTNLIYHSGISSRLL 60
           I  LQ H  S L +N                ST ++T+Q+HA  +KT+  +H  +   L 
Sbjct: 23  IQQLQHHPHSTLKFNPTPLQTPPTSPSQHDLSTLEQTKQIHAHIIKTH--FHHALQIPL- 79

Query: 61  SLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLP 120
                   N+     S        PS   +N +I  Y    +   AL ++  L       
Sbjct: 80  --------NDFPSGLS--------PS-AQWNFVITSYTKRNQPRNALNVYAQLRKMDFEV 122

Query: 121 DNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVF 180
           DNF  P V+K   ++   + GK+IHG V K G   D FV ++L+ MY +   ++  R VF
Sbjct: 123 DNFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVF 182

Query: 181 DAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDR-------DLF------- 220
           D M ++D+VSW+ +I    +  E ++A++L  EM      P         +LF       
Sbjct: 183 DKMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMR 242

Query: 221 ---------------------SWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMING 259
                                + T L+D ++KCG + +AR++F  +  + +VSW AMI G
Sbjct: 243 MGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAG 302

Query: 260 YMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATL 319
            +++  ++ A  LFD  + RD++ W +M++ Y       +A  L + M    V P   T+
Sbjct: 303 CIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTI 362

Query: 320 VSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK 379
           VS LS  A    L+ G+W+HSYI K    VD +L T L+ MY+KCG I +A  +F     
Sbjct: 363 VSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAIS 422

Query: 380 KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRY 439
           + +  W A+I G  MHG   +ALD+F +M R G+KP  ITFIG+L+ACSHAGLV +G++ 
Sbjct: 423 RDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKL 482

Query: 440 FNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
           F  M++ +G+ P IEHYGC+VD+L R G L+EA   I+SMP++PN ++W +L++  R H 
Sbjct: 483 FEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHK 542

Query: 500 NKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSI 559
           N  +GE AA  L+++ P+  G  V++SNIYAAA +W   + VR+ MK  G +K+PG S I
Sbjct: 543 NPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVI 602

Query: 560 EHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELE 619
           E  G +HEF++GD+SHPQ   I+  L+EMR KL  AG+VPDT+ VLL I D++EKE  L 
Sbjct: 603 EVNGTVHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLNI-DEEEKETALT 661

Query: 620 NHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFK 679
            HSE+LA+AFGLI+    +PIRIVKNLRVCNDCH+ TKLLS IY R IIVRD +RFHHF+
Sbjct: 662 YHSEKLAMAFGLISTAPSTPIRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFHHFR 721

Query: 680 NGSCSCKDFW 689
            G CSC D+W
Sbjct: 722 EGYCSCGDYW 731


>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Vitis vinifera]
          Length = 631

 Score =  535 bits (1379), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 290/658 (44%), Positives = 407/658 (61%), Gaps = 50/658 (7%)

Query: 33  THKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNL 92
           T ++ +QLHA  +KT  I     ++ LL         +L YAR IF R +  P+   YN 
Sbjct: 23  TMQDLKQLHAQMIKTAQIRDPLAAAELLRFSAVSDHRDLDYARKIF-RSMHRPNCFSYNT 81

Query: 93  LIKCYVFNQRSHEALTLFCDLL-DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKL 151
           LI+    +    +AL +F +++ D  + P+ FT P V K   R   ++EG+Q+HGL  K 
Sbjct: 82  LIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVKF 141

Query: 152 GFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLF 211
           G   D+FV+S++V M                               Y+  G +E A +LF
Sbjct: 142 GLDSDEFVVSNVVRM-------------------------------YLSCGVMEDAHRLF 170

Query: 212 DEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACE 271
                R +F     VDG   C  +   +    R  + ++V WN MI+GY++ G+++ A  
Sbjct: 171 Y----RRVF-----VDG---CDGIRDKK----RRVDGDVVLWNVMIDGYVRIGELEVARN 214

Query: 272 LFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAV 331
           LFD+M  R +++WN MIAGY  +G F EA+E+   M + +V PN  TLVS L A++ L  
Sbjct: 215 LFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGA 274

Query: 332 LNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVG 391
           L  G+W+H Y V+N   VD VLG+ LI MY+KCGSIE AL VF  + K+ V  W+ +I G
Sbjct: 275 LELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAG 334

Query: 392 LGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP 451
           L MHG A   LD F  M R G+ P+ +T+IG+L+ACSHAGLVN+GR +F+ M+   G+EP
Sbjct: 335 LAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEP 394

Query: 452 TIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNL 511
            IEHYGC+VD+L R G LEE++  I +MP++P+ VIW +LL   + HGN ++G+  A +L
Sbjct: 395 RIEHYGCMVDLLGRAGLLEESEELILNMPIKPDDVIWKALLGACKMHGNVEMGKRVAEHL 454

Query: 512 IKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVG 571
           +++AP   G YV LSNIYA+ G W+ V++VR MMK+   RKDPG S IE  GV+HEF+V 
Sbjct: 455 MELAPHDSGSYVALSNIYASLGNWEGVAKVRLMMKEMDVRKDPGCSWIELDGVIHEFLVE 514

Query: 572 DKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGL 631
           D SHP++ +IHS L EM   L   G+ P+TTQVL  + D+++KE+ L  HSE++AIAFGL
Sbjct: 515 DDSHPKSKKIHSMLQEMSRNLILVGYRPNTTQVLTNM-DEEDKESSLNYHSEKIAIAFGL 573

Query: 632 INVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           I+ + ++P+RI KNLR+C DCHS  KL+S IY R+IIVRD  RFHHF NGSCSC D+W
Sbjct: 574 ISTQPQTPLRITKNLRICEDCHSSIKLISKIYKRKIIVRDRKRFHHFVNGSCSCMDYW 631


>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 780

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 279/708 (39%), Positives = 413/708 (58%), Gaps = 45/708 (6%)

Query: 26  NILKF---SSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRIL 82
           NIL+F    +   + +Q+HA  ++T+       +S+LL+ Y     + L YA+++F++I 
Sbjct: 74  NILEFIDQCTNTMQLKQIHAHMLRTSRFCDPYTASKLLTAYAISSCSCLIYAKNVFNQIP 133

Query: 83  QHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFL-LPDNFTLPCVIKGAARLGAIKEG 141
           Q P+L  +N LI+ Y  +    ++  +F  +L      P+ FT P + K A+RL  +  G
Sbjct: 134 Q-PNLYCWNTLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHLG 192

Query: 142 KQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKK 201
             +HG+V K     D F+L+SL++ Y   G  DL  RVF  M  KD+VSWN +I+ +   
Sbjct: 193 SVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFALG 252

Query: 202 GEVEVAMKLFDEMPDRDLFS----------------------WTC--------------- 224
           G  + A+ LF EM  +D+                        W C               
Sbjct: 253 GLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTEHLILN 312

Query: 225 --LVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLI 282
             ++D + KCG +  A+++F +M  +++VSW  M++G+ K G+ D A  +FD M  +   
Sbjct: 313 NAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTA 372

Query: 283 TWNSMIAGYELNGRFMEALELLETM-LIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSY 341
            WN++I+ YE NG+   AL L   M L  D  P++ TL+ AL A A L  ++ G W+H Y
Sbjct: 373 AWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGHWIHVY 432

Query: 342 IVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQA 401
           I K+   ++  L T L+ MY+KCG++  A+ VF A+ +K V  W+AMI  L M+G    A
Sbjct: 433 IKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVERKDVYVWSAMIGALAMYGQGKAA 492

Query: 402 LDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVD 461
           LDLF+ M    +KP A+TF  +L AC+HAGLVN+G + F  M   YGI P I+HY C+VD
Sbjct: 493 LDLFSSMLEAYIKPNAVTFTNILCACNHAGLVNEGEQLFEQMEPLYGIVPQIQHYVCVVD 552

Query: 462 ILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGC 521
           I  R G LE+A S IE MP+ P   +W +LL     HGN ++ E A  NL+++ P   G 
Sbjct: 553 IFGRAGLLEKAASFIEKMPIPPTAAVWGALLGACSRHGNVELAELAYQNLLELEPCNHGA 612

Query: 522 YVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEI 581
           +V+LSNIYA AG W+KVS +R++M+    +K+P  SSI+  G++HEF+VGD SHP + +I
Sbjct: 613 FVLLSNIYAKAGDWEKVSNLRKLMRDSDVKKEPWCSSIDVNGIVHEFLVGDNSHPFSQKI 672

Query: 582 HSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIR 641
           +SKL E+  K K  G+ PD + +L   E+    E  L  HSE+LAIAFGLI+  S  PIR
Sbjct: 673 YSKLDEISEKFKPIGYKPDMSNLLQLSEEDNLMEQSLNVHSEKLAIAFGLISTASSQPIR 732

Query: 642 IVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           IVKN+R+C DCH+  KL+S +Y+R+I++RD  RFHHF+ G CSC D+W
Sbjct: 733 IVKNIRICGDCHAFAKLVSQLYDRDILLRDRYRFHHFRGGKCSCLDYW 780


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 279/669 (41%), Positives = 404/669 (60%), Gaps = 44/669 (6%)

Query: 57  SRLLSLYV-DPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLD 115
           S+LL   +  P+ + L YA S+F  I Q P+ + +N +I+ +  +     AL L+  ++ 
Sbjct: 13  SKLLDFCILTPYFHGLPYAISVFKSI-QEPNQLSWNTMIRGHALSSDPISALNLYVYMIS 71

Query: 116 RFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDL 175
             L P+++T P + K  A+  A +EGKQIH  + K G   D  V +SL+SMYA+ G ++ 
Sbjct: 72  LGLSPNSYTFPFLFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVED 131

Query: 176 GRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKV 235
             +VFD    +D+VS+  +I GY  +G ++ A K+FDE+P +D+ SW  ++ G+++ G+ 
Sbjct: 132 AHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRY 191

Query: 236 EIAREIFYRM------PN--------------------RNLVSW-------------NAM 256
           + A E+F  M      P+                    R + SW             NA+
Sbjct: 192 KEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNAL 251

Query: 257 INGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPND 316
           I+ Y K G+++ A  LF+ ++ +D+I+WN++I GY       EAL + + ML     PND
Sbjct: 252 IDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPND 311

Query: 317 ATLVSALSAVAGLAVLNKGRWMHSYIVKN--GFVVDGVLGTLLIQMYSKCGSIESALTVF 374
            T++S L A A L  ++ GRW+H YI K   G + +  L T LI MY+KCG+IE+A  VF
Sbjct: 312 VTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVF 371

Query: 375 RAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVN 434
             I  K +    AMI G  MHG A  A DL ++M + G++P  ITF+G+L+ACSHAGL +
Sbjct: 372 DTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSD 431

Query: 435 DGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG 494
            GR+ F  M  DY IEP +EHYGC++D+L R+G  +EA+  I SM M P+ VIW SLL  
Sbjct: 432 LGRKIFKSMTLDYRIEPKLEHYGCMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSLLKA 491

Query: 495 ARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDP 554
            + H N ++GE  A  L+K+ P   G YV+LSNIYA + +WD V+ VR ++  +G +K P
Sbjct: 492 CKIHKNLELGELIAQKLMKIEPKNPGSYVLLSNIYATSARWDDVARVRTLLNDKGLKKVP 551

Query: 555 GSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEK 614
           G SSIE   ++HEF++GDK HPQ  EI+  L E+ + L   G V DT++VL  +E++  K
Sbjct: 552 GCSSIEIDSMVHEFLIGDKFHPQNKEIYKMLEEIDSLLAETGFVSDTSEVLQEMEEEL-K 610

Query: 615 EAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSR 674
           E  L  HSE+LAIAFGLI+ K  + +RIVKNLRVC +CH  TKL+S IY REII RD SR
Sbjct: 611 EGALSYHSEKLAIAFGLISTKPGTKLRIVKNLRVCRNCHEATKLISKIYKREIIARDRSR 670

Query: 675 FHHFKNGSC 683
           FHHFK+G C
Sbjct: 671 FHHFKDGMC 679



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 108/436 (24%), Positives = 194/436 (44%), Gaps = 73/436 (16%)

Query: 31  SSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHI---------------------- 68
           S   +E +Q+HA  +K  L     + + L+S+Y    I                      
Sbjct: 91  SKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSYTAM 150

Query: 69  -------NNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPD 121
                   N+  A+ +FD I     +V +N +I  Y    R  EAL LF +++   + PD
Sbjct: 151 ITGYASRGNMDKAQKMFDEI-PIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPD 209

Query: 122 NFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFD 181
             T+  V+      G ++ G+QIH  +   GFG +  ++++L+ +Y+K GE++    +F+
Sbjct: 210 ESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFE 269

Query: 182 AMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM----PDRDLFSWTCLVDGFSKCGKVEI 237
            +  KD++SWN LI GY      + A+ +F EM       +  +   ++   +  G ++I
Sbjct: 270 GLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDI 329

Query: 238 AREIFYRMPNR------NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGY 291
            R I   +  +      N     ++I+ Y K G++++A ++FD +  + L + N+MI G+
Sbjct: 330 GRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGF 389

Query: 292 ELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDG 351
            ++GR   A +LL  M    + P+D T V  LSA +   + + GR               
Sbjct: 390 AMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGR--------------- 434

Query: 352 VLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRM 411
                          I  ++T+   I + K+ H+  MI  LG  G+  +A +L N M   
Sbjct: 435 --------------KIFKSMTLDYRI-EPKLEHYGCMIDLLGRSGLFKEAEELINSMT-- 477

Query: 412 GMKPTAITFIGVLNAC 427
            M+P  + +  +L AC
Sbjct: 478 -MEPDGVIWGSLLKAC 492


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 288/717 (40%), Positives = 426/717 (59%), Gaps = 51/717 (7%)

Query: 20  PSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLY-VDPHINNLHYARSIF 78
           PS L   +L+   + K+  Q+HA ++   L +     SRL+S + +    + L ++R +F
Sbjct: 10  PSSL--CLLESCKSFKQGLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRLLF 67

Query: 79  DRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLP-DNFTLPCVIKGAARLGA 137
            +I   P+L ++N +I+ Y  +    EA+ L+  ++ + + P +NFT P ++   ARL +
Sbjct: 68  SQI-DCPNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSS 126

Query: 138 IKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDG 197
           ++ G ++H  + K GF  D FV ++L+ +Y+ FG ++L R +FD    +DLVS+N +I G
Sbjct: 127 LEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKG 186

Query: 198 YVKKGEVEVAMKLFDEM------PDR----DLFSW------------------------- 222
           Y +  + E A+ LF EM      PD      LFS                          
Sbjct: 187 YAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSID 246

Query: 223 ------TCLVDGFSKCGKVEIAREIFYRM-PNRNLVSWNAMINGYMKAGDVDSACELFDD 275
                 + +VD ++KCG + IA  +F  M  +++  +W++M+ GY + G+++ A +LF+ 
Sbjct: 247 SNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNH 306

Query: 276 MEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKG 335
           M  RD+I+W +MI+GY   G+  EALEL + M    + P++ TLV+ LSA A L   + G
Sbjct: 307 MHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAFDLG 366

Query: 336 -RWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKK-KVGH-WTAMIVGL 392
            R  H YI    F  + +L   ++ MY+KCGSI+SAL +FR + K  K G  + +MI GL
Sbjct: 367 KRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGL 426

Query: 393 GMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT 452
             HG+   A+ +F ++   G+KP  +TF+GVL AC H+GL+ +G++ F  M N YGI+P 
Sbjct: 427 AQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQ 486

Query: 453 IEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLI 512
           +EHYGC+VD+L R G LEEA   ++ MP   N VIW +LLS  R HGN  IGE A   L+
Sbjct: 487 MEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEIAGQKLL 546

Query: 513 KVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGD 572
           ++       YV+LSNI A A QW++  +VR++M+  G RK PG S IE  G +H FV  D
Sbjct: 547 EMEAQHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWSYIELGGAIHRFVASD 606

Query: 573 KSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLI 632
           KSHPQ  EI   L +M  +LK+AG+VP+T QV+  I D++EKE+ +  HSE+LA+AFGL+
Sbjct: 607 KSHPQGKEIELMLKDMAMRLKSAGYVPNTAQVMFDI-DEEEKESVVSYHSEKLALAFGLM 665

Query: 633 NVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
                  IRIVKNLR+C DCH   KL+S IY REI VRD  RFHHF+NGSCSC DFW
Sbjct: 666 YCSPTDTIRIVKNLRICADCHKAFKLVSEIYGREITVRDTMRFHHFRNGSCSCMDFW 722


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 274/671 (40%), Positives = 402/671 (59%), Gaps = 10/671 (1%)

Query: 27  ILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPS 86
           IL+   T K+ QQ+HA  +KT  +    I+  +L        + + YA SIF+ I   P 
Sbjct: 27  ILQQCKTPKDLQQVHAHLLKTRRLLDPIITEAVLESAALLLPDTIDYALSIFNHI-DKPE 85

Query: 87  LVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHG 146
              YN++I+   F +    AL LF  + ++ +  D FT   V+K  +R+ A++EG+Q+H 
Sbjct: 86  SSAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKACSRMKALREGEQVHA 145

Query: 147 LVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEV 206
           L+ K GF  ++FV ++L+ MYA  G+I + R VFD M ++ +V+WN ++ GY K G  + 
Sbjct: 146 LILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDE 205

Query: 207 AMKLFDEMPD-RDLFSWTCLVDGFSKCGKVE-------IAREIFYRMPNRNLVSWNAMIN 258
            +KLF ++ + R  F    ++     CG++        I   I  +   RN     ++I+
Sbjct: 206 VVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTLTTSLID 265

Query: 259 GYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDAT 318
            Y K G VD+A +LFD+M+ RD++ W++MI+GY    R  EAL L   M  G+V PN+ T
Sbjct: 266 MYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVT 325

Query: 319 LVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS 378
           +VS L + A L     G+W+H YI K    +   LGT LI  Y+KCG I+ ++ VF+ +S
Sbjct: 326 MVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFKEMS 385

Query: 379 KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR 438
            K V  WTA+I GL  +G    AL+ F+ M    +KP  +TFIGVL+ACSHA LV+ GR 
Sbjct: 386 FKNVFTWTALIQGLANNGEGKMALEFFSSMLENDVKPNDVTFIGVLSACSHACLVDQGRH 445

Query: 439 YFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNH 498
            FN M  D+ IEP IEHYGC+VDIL R G+LEEA   I++MP  PN V+W +LL+  R H
Sbjct: 446 LFNSMRRDFDIEPRIEHYGCMVDILGRAGFLEEAYQFIDNMPFPPNAVVWRTLLASCRAH 505

Query: 499 GNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSS 558
            N ++ E +  ++ ++ P   G Y++LSN YA  G+ +    VR ++K++  +K PG S 
Sbjct: 506 KNIEMAEKSLEHITRLEPAHSGDYILLSNTYALVGRVEDAIRVRSLIKEKEIKKIPGCSL 565

Query: 559 IEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAEL 618
           IE  GV+HEF   D  H  + EIH  L +M  ++K  G+VP+T    L  E++  KE  +
Sbjct: 566 IELDGVVHEFFSEDGEHKHSKEIHDALDKMMKQIKRLGYVPNTDDARLEAEEE-SKETSV 624

Query: 619 ENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHF 678
            +HSE+LAIA+GLI    R+ IRI KNLR+C DCH+ TK +S ++ R IIVRD +RFHHF
Sbjct: 625 SHHSEKLAIAYGLIRTSPRTTIRISKNLRMCRDCHNATKFISQVFERMIIVRDRNRFHHF 684

Query: 679 KNGSCSCKDFW 689
           K+G CSC D+W
Sbjct: 685 KDGLCSCNDYW 695


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  526 bits (1354), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 281/663 (42%), Positives = 405/663 (61%), Gaps = 14/663 (2%)

Query: 36  ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIK 95
           + +Q+HA  ++T L +    +S++++        +L YAR +F +I  +P+    N +I+
Sbjct: 3   QLKQIHAQMLRTGLFFDPFTASKIVAFCSLQESGSLQYARLVFSQI-PNPTSYTCNSIIR 61

Query: 96  CYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF 155
                    EAL  + +++ + L+PD +T P + K         EGKQIH    KLGF  
Sbjct: 62  GCTDKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSCRNSS---EGKQIHCHSTKLGFAS 118

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP 215
           D +  ++L++MY+  G +   R+VFD M+DK +VSW  +I  + +  +   A++LFD M 
Sbjct: 119 DTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMM 178

Query: 216 DRDLF--SWTCLVDGFSKCGKVE-------IAREIFYRMPNRNLVSWNAMINGYMKAGDV 266
             +    +   LV+  + C +         I   I      R++V    +++ Y K G V
Sbjct: 179 KSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCV 238

Query: 267 DSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326
             A +LFD  + ++L +WN MI G+  +  + EAL L   M    +  +  T+ S L A 
Sbjct: 239 QLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLAC 298

Query: 327 AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWT 386
             L  L  G+W+H+YI K    VD  LGT L+ MY+KCGSIE+A+ VF  + +K V  WT
Sbjct: 299 THLGALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWT 358

Query: 387 AMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIND 446
           A+I+GL M G A  AL  F++M   G+KP AITF+GVL ACSHAG V++G  +FN M + 
Sbjct: 359 ALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSMSDT 418

Query: 447 YGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEY 506
           YGI+PTIEHYG LVDIL R G + EA+  I+SMPM P+  +   LL   R HGN +  E 
Sbjct: 419 YGIQPTIEHYGGLVDILGRAGRIAEAEELIKSMPMAPDQFVLGGLLGACRIHGNLEAAER 478

Query: 507 AANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLH 566
           AA  L+++ P   G YV+LSNIY ++ +W++    RE+M +RG RK PG S IE  GV+H
Sbjct: 479 AAKQLLEIDPYHSGTYVLLSNIYKSSKKWEEAKRTRELMAERGMRKPPGCSQIEVHGVVH 538

Query: 567 EFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLA 626
           EFV GD SH Q+ EI+  L +M +KLK AG+VPD ++VL  + ++ EKE EL  HSE+LA
Sbjct: 539 EFVKGDSSHRQSSEINEMLEDMISKLKNAGYVPDKSEVLFDMAEE-EKETELSLHSEKLA 597

Query: 627 IAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCK 686
           IAFGL++    +PIR+VKNLR+C+DCHS TKL+S +YNREIIVRD +RFHHFK+G+CSC+
Sbjct: 598 IAFGLLSTSVGTPIRVVKNLRICSDCHSATKLISKLYNREIIVRDRNRFHHFKDGTCSCR 657

Query: 687 DFW 689
            FW
Sbjct: 658 GFW 660


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  526 bits (1354), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 280/668 (41%), Positives = 409/668 (61%), Gaps = 47/668 (7%)

Query: 52  HSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFC 111
           H   S  L    + PH + L YA S+F+ I + P+ +++N++ + +  +     AL L+ 
Sbjct: 6   HYAXSQLLEFCILSPHFDGLPYAISVFETIPE-PNQLIWNIMFRGHALSSDPVSALKLYV 64

Query: 112 DLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFG 171
            ++   LLP+ FT P ++K  A+    KEG+QIHG V KLGF  D +V +SL+SMYA+ G
Sbjct: 65  VMISLGLLPNFFTFPFLLKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNG 124

Query: 172 EIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSK 231
            ++  ++VFD    +D+VS+  LI GY  +G +E A K+FDE+P +D+ SW  ++ G+++
Sbjct: 125 RLEDAQKVFDRSSHRDVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAE 184

Query: 232 CGKVEIAREIFYRM------PN--------------------RNLVSW------------ 253
            G  + A E+F  M      P+                    R + SW            
Sbjct: 185 TGNYKKALELFKEMMKTNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKI 244

Query: 254 -NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDV 312
            NA+I+ Y K G+V++ACEL + +  +D+I+WN++I GY     + EAL L + ML    
Sbjct: 245 VNALIDLYSKCGEVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE 304

Query: 313 LPNDATLVSALSAVAGLAVLNKGRWMHSYIVKN--GFVVDGV--LGTLLIQMYSKCGSIE 368
            PND T++S L A A L  ++ GRW+H YI K   G VV     L T LI MY+KCG I+
Sbjct: 305 TPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDID 364

Query: 369 SALTVFRAIS-KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNAC 427
           +A  V  + +  + +  W AMI G  MHG A  A D+F++M + G++P  ITF+G+L+AC
Sbjct: 365 AAPQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSAC 424

Query: 428 SHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVI 487
           SH+G+++ GR  F  M  DY I P +EHYGC++D+L  +G  +EA+  I +MPM P+ VI
Sbjct: 425 SHSGMLDLGRNIFRSMRQDYNITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVI 484

Query: 488 WMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547
           W SLL   + HGN ++GE  A  LIK+ P+  G YV+LSNIYA AG+W++V ++R ++  
Sbjct: 485 WCSLLKACKIHGNLELGESFAKKLIKIEPENPGSYVLLSNIYATAGKWNEVXKIRTLLND 544

Query: 548 RGFRKD-PGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLL 606
           +G +K  PG SSIE   V+HEF++GDK HPQ  EI+  L EM   L+ AG VPDT++VL 
Sbjct: 545 KGMKKKVPGCSSIEIDSVVHEFIIGDKLHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQ 604

Query: 607 CIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNRE 666
            +E++  KE  L +HSE+LAIAFGLI+ K  + + IVKNLRVC +CH  TKL+S IY RE
Sbjct: 605 EMEEE-WKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKRE 663

Query: 667 IIVRDNSR 674
           II RD +R
Sbjct: 664 IIARDRTR 671



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 115/469 (24%), Positives = 206/469 (43%), Gaps = 91/469 (19%)

Query: 31  SSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDR-----ILQHP 85
           S T KE QQ+H   +K        + + L+S+Y       L  A+ +FDR     ++ + 
Sbjct: 88  SKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQN--GRLEDAQKVFDRSSHRDVVSYT 145

Query: 86  SLVL-------------------------YNLLIKCYVFNQRSHEALTLFCDLLDRFLLP 120
           +L+                          +N +I  Y       +AL LF +++   + P
Sbjct: 146 ALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKP 205

Query: 121 DNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVF 180
           D  T+  V+   A+ G+I+ G+Q+H  +   GFG +  ++++L+ +Y+K GE++    + 
Sbjct: 206 DESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACELL 265

Query: 181 DAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM----PDRDLFSWTCLVDGFSKCGKVE 236
           + + +KD++SWN LI GY      + A+ LF EM       +  +   ++   +  G ++
Sbjct: 266 EGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAID 325

Query: 237 IAR--EIFYRMPNRNLVSWNA------MINGYMKAGDVDSACELFDDMEI-RDLITWNSM 287
           I R   ++     + +V  NA      +I+ Y K GD+D+A ++ D     R L TWN+M
Sbjct: 326 IGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAM 385

Query: 288 IAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGF 347
           I G+ ++GR   A ++   M    + P+D T V  LSA +   +L+ GR           
Sbjct: 386 IFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGR----------- 434

Query: 348 VVDGVLGTLLIQMYSKCGSIESALTVFRAISK-----KKVGHWTAMIVGLGMHGMATQAL 402
                                    +FR++ +      K+ H+  MI  LG  G+  +A 
Sbjct: 435 ------------------------NIFRSMRQDYNITPKLEHYGCMIDLLGHSGLFKEAE 470

Query: 403 DLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP 451
           ++ N    M M+P  + +  +L AC   G +  G  +   +I    IEP
Sbjct: 471 EMINT---MPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIK---IEP 513


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  526 bits (1354), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 278/666 (41%), Positives = 407/666 (61%), Gaps = 21/666 (3%)

Query: 39  QLHALSVKTNLIYHSG--ISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVL--YNLLI 94
           QLHA  +K+  +  S     S L +    P +  L YA S+F R+   P L    YN+L+
Sbjct: 34  QLHAALIKSGELTGSPKCFHSLLEAAAASPTL--LPYAVSLF-RLGPRPPLSTPCYNVLM 90

Query: 95  KCYVFNQRSHEALTLFCDLLD-RFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGF 153
           +  +      +AL LF ++LD   + PD  T+ C +K  +R+  +  G+ I     K G 
Sbjct: 91  RALLHAGHPEDALHLFVEMLDVASVCPDQHTVACALKSCSRMCTLDVGRGIQAYAVKRGL 150

Query: 154 GFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDE 213
             D+FVLSSL+ MYA   ++   + +FDA+++  +V WN +I  Y+K G     +++F  
Sbjct: 151 MADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKNGNWMEVVEMFKG 210

Query: 214 MPDRDL-FSWTCLVDGFSKCGKVE-------IAREIFYR--MPNRNLVSWNAMINGYMKA 263
           M +  + F    LV   + CG++        +A  +  +  + NRNL++  A+I+ Y K 
Sbjct: 211 MLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRNLMT--ALIDMYAKC 268

Query: 264 GDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSAL 323
           G++  A  LFD M+ RD++ W++MI+GY    +  EAL L   M + +V PND T+VS L
Sbjct: 269 GELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLAEVEPNDVTMVSVL 328

Query: 324 SAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVG 383
           SA A L  L  G+W+HSYI +    +  +LGT L+  Y+KCG I+ A+  F ++  K   
Sbjct: 329 SACAVLGALETGKWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEAFESMPVKNSW 388

Query: 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMM 443
            WTA+I G+  +G   +AL+LF+ M +  ++PT +TFIGVL ACSH+ LV +GRR+F+ M
Sbjct: 389 TWTALIKGMATNGRGREALELFSSMRKASIEPTDVTFIGVLMACSHSCLVEEGRRHFDSM 448

Query: 444 INDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDI 503
             DYGI+P  EHYGC+VD+L R G ++EA   I +MP+ PN VIW +LLS    H N +I
Sbjct: 449 TQDYGIKPRAEHYGCVVDLLGRAGLIDEAYQFIRTMPIEPNAVIWRALLSSCAVHKNVEI 508

Query: 504 GEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRG 563
           GE A   ++ + P   G Y++LSNIYA+ GQW   + +R+ MK RG  K PG S IE  G
Sbjct: 509 GEEALKQIVSLNPSHSGDYILLSNIYASVGQWKNAAMIRKEMKDRGIEKTPGCSLIELDG 568

Query: 564 VLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSE 623
           V+ EF   D  HPQ  EI+ K+ EM +++K AG++P+T  V L + D+ EKE  + +HSE
Sbjct: 569 VVVEFFAEDSDHPQLKEIYQKVEEMIDRIKMAGYIPNTADVRLEV-DEHEKEVSVSHHSE 627

Query: 624 RLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSC 683
           +LAIAFGL+ +   + IR+ KNLRVC DCHS TKL+S +YNREI+VRD +RFHHFK+G+C
Sbjct: 628 KLAIAFGLMKLDPGATIRLSKNLRVCTDCHSATKLISKVYNREIVVRDRNRFHHFKDGTC 687

Query: 684 SCKDFW 689
           SC D+W
Sbjct: 688 SCNDYW 693


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  522 bits (1345), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 278/665 (41%), Positives = 400/665 (60%), Gaps = 18/665 (2%)

Query: 39  QLHALSVKTNLIYHSGIS--SRLLSLYVDPHINNLHYARSIFDRILQHPSLVL--YNLLI 94
           QLHA  +K+  +  S  S  S L +    P +  L YA S+F R+   P L    YN+L+
Sbjct: 34  QLHAALIKSGELTGSAKSFHSLLEAAAASPTL--LPYAVSLF-RLGPRPPLSTPCYNVLM 90

Query: 95  KCYVFNQRSHEALTLFCDLL--DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLG 152
           + ++      +AL LF ++L        D  T  C +K  +R+ A+  G+ +     K G
Sbjct: 91  RAFLHAGHPEDALHLFIEMLHAASACPADQHTAACALKSCSRMCALDVGRGVQAYAVKRG 150

Query: 153 FGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFD 212
              D+FVLSSL+ MYA  G++   R VFDA ++  +V WN ++  Y+K G+    +++F 
Sbjct: 151 LVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEVVEMFK 210

Query: 213 EMPDRDL-FSWTCLVDGFSKCGKVE-------IAREIFYRMPNRNLVSWNAMINGYMKAG 264
            M +  + F    LV   + CG++        +A  +      RN     A+++ Y K G
Sbjct: 211 GMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDMYAKCG 270

Query: 265 DVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS 324
           ++  A  LFD M+ RD++ W++MI+GY    +  EAL L   M +  V PND T+VS LS
Sbjct: 271 EIGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTMVSVLS 330

Query: 325 AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGH 384
           A A L  L  G+W+HSY+ +    +  +LGT L+  Y+KCG I+ A+  F ++  K    
Sbjct: 331 ACAVLGALETGKWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDDAVEAFESMPVKNSWT 390

Query: 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMI 444
           WTA+I G+  +G   +AL+LF+ M   G++PT +TFIGVL ACSH+ LV +GRR+F+ M 
Sbjct: 391 WTALIKGMATNGRGREALELFSSMREAGIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMA 450

Query: 445 NDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIG 504
            DYGI+P +EHYGC+VD+L R G ++EA   I +MP+ PN VIW +LLS    H N  IG
Sbjct: 451 RDYGIKPRVEHYGCMVDLLGRAGLVDEAYQFIRTMPIEPNAVIWRALLSSCAVHRNVGIG 510

Query: 505 EYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGV 564
           E A   +I + P   G YV+LSNIYA+AGQW   + VR+ MK RG  K PG S IE  GV
Sbjct: 511 EEALKQIISLNPSHSGDYVLLSNIYASAGQWKDAAMVRKEMKDRGIEKTPGCSLIELDGV 570

Query: 565 LHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSER 624
           + EF   D  HP+  EI+ K+ EM  ++K AG+VP+T  V L +E ++EKE  + +HSE+
Sbjct: 571 VFEFFAEDSDHPELREIYQKVEEMIGRIKVAGYVPNTADVRLEVE-EREKEVSVSHHSEK 629

Query: 625 LAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCS 684
           LAIAFGL+ +   + IR+ KNLRVC DCHS TKL+S +Y+REI+VRD + FHHFK+G+CS
Sbjct: 630 LAIAFGLMKLDPGATIRLSKNLRVCADCHSATKLISKVYDREIVVRDRNIFHHFKDGTCS 689

Query: 685 CKDFW 689
           C D+W
Sbjct: 690 CNDYW 694


>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
          Length = 643

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 258/560 (46%), Positives = 370/560 (66%), Gaps = 2/560 (0%)

Query: 123 FTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDA 182
            T P VIK          G  +H  V K GF  D ++++SL+ +YA   ++   +++F  
Sbjct: 1   MTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSL 60

Query: 183 MDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIF 242
             D+D+VSWN +IDGYVK+GE+     +FD M  RD+ SW  +++G++  GK++ A+ +F
Sbjct: 61  CSDRDVVSWNAMIDGYVKRGEMGHTRMVFDRMVCRDVISWNTIINGYAIVGKIDEAKRLF 120

Query: 243 YRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALE 302
             MP RNLVSWN+M++G++K G+V+ A  LF +M  RD+++WNSM+A Y   G+  EAL 
Sbjct: 121 DEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALA 180

Query: 303 LLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYS 362
           L + M    V P +AT+VS LSA A L  L+KG  +H+YI  N   V+ ++GT L+ MY+
Sbjct: 181 LFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYA 240

Query: 363 KCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIG 422
           KCG I  A  VF A+  K V  W  +I G+ +HG   +A  LF +M    ++P  ITF+ 
Sbjct: 241 KCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDITFVA 300

Query: 423 VLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMR 482
           +L+ACSHAG+V++G++  + M + YGIEP +EHY C++D+L R G LEEA   I +MPM 
Sbjct: 301 MLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYDCVIDLLARAGLLEEAMELIGTMPME 360

Query: 483 PNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVR 542
           PN     +LL G R HGN ++GE     LI + P   G Y++LSNIYAAA +WD   +VR
Sbjct: 361 PNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVR 420

Query: 543 EMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAA-GHVPDT 601
            +MK  G  K PG S IE +G++H FV GD SHP++++I+ KL+E+  +LK+A G+  DT
Sbjct: 421 NLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYDKLNEIHTRLKSAIGYSADT 480

Query: 602 TQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSG 661
             VLL +E++ +KE  L  HSE+LAIA+GL+++ S+  IRIVKNLRVC DCH VTKL+S 
Sbjct: 481 GNVLLDMEEE-DKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVTKLISK 539

Query: 662 IYNREIIVRDNSRFHHFKNG 681
           +Y REIIVRD +RFHHF++G
Sbjct: 540 VYGREIIVRDRNRFHHFEDG 559



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 136/276 (49%), Gaps = 16/276 (5%)

Query: 87  LVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHG 146
           +V +N ++ CY    + +EAL LF  +    + P   T+  ++   A LGA+ +G  +H 
Sbjct: 159 VVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHT 218

Query: 147 LVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEV 206
            +       +  V ++LV MYAK G+I L  +VF+AM+ KD+++WN +I G    G V+ 
Sbjct: 219 YINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKE 278

Query: 207 AMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNR-----NLVSWNAMI 257
           A +LF EM +  +     ++  ++   S  G V+  +++   M +       +  ++ +I
Sbjct: 279 AQQLFKEMKEASVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYDCVI 338

Query: 258 NGYMKAGDVDSACELFDDMEIR-DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPND 316
           +   +AG ++ A EL   M +  +     +++ G  ++G F E  E++   LI ++ P  
Sbjct: 339 DLLARAGLLEEAMELIGTMPMEPNPSALGALLGGCRIHGNF-ELGEMVGKRLI-NLQPCH 396

Query: 317 ATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV 352
           +     LS +   A     +W  +  V+N   V+G+
Sbjct: 397 SGRYILLSNIYAAA----KKWDDARKVRNLMKVNGI 428


>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 577

 Score =  520 bits (1338), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 254/578 (43%), Positives = 369/578 (63%), Gaps = 2/578 (0%)

Query: 113 LLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGE 172
           +L   +LP   +   +++  A  G  + G+  H  + K+GF +D  + + L+  YAK G+
Sbjct: 1   MLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGD 60

Query: 173 IDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKC 232
           +   +RVF  M  +D+V+ N +I    K G VE A  LFD M +R+  SW  ++  + K 
Sbjct: 61  LKCAKRVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNMTERNSCSWNSMITCYCKL 120

Query: 233 GKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDM-EIRDLITWNSMIAGY 291
           G +  AR +F   P +++VSWNA+I+GY K+  + +A ELF  M   R+ +TWN+MI+ Y
Sbjct: 121 GDINSARLMFDCNPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMISAY 180

Query: 292 ELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDG 351
              G F  A+ + + M   +V P + T+VS LSA A L  L+ G W+H YI      +D 
Sbjct: 181 VQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDV 240

Query: 352 VLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRM 411
           VLG  LI MY KCG++E+A+ VF  +S+K +  W ++IVGLGM+G   +A+  F  M + 
Sbjct: 241 VLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKE 300

Query: 412 GMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEE 471
           G+KP  +TF+G+L+ CSH+GL++ G+RYF+ M+  YG+EP +EHYGC+VD+L R GYL+E
Sbjct: 301 GIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKE 360

Query: 472 AKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAA 531
           A   I +MPM+PN ++  SLL   + H +  +GE     L+++ P   G YV LSN+YA+
Sbjct: 361 ALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPCDGGNYVFLSNLYAS 420

Query: 532 AGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNK 591
             +WD V+  R++M KRG  K PG SSIE   ++HEFV GD SHPQ  +I++ L E+  +
Sbjct: 421 LSRWDDVNTCRKLMIKRGVHKTPGCSSIEVNNIVHEFVAGDTSHPQFTQINAFLDEIAKE 480

Query: 592 LKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCND 651
           LK  GHVP+T  VL  IE++ EKE  +  HSER+A+AFGL++      IR+VKNLR C+D
Sbjct: 481 LKGQGHVPNTANVLHDIEEE-EKEGAIRYHSERIAVAFGLMSTPPGKTIRVVKNLRTCSD 539

Query: 652 CHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           CHS  KL+S  + REIIVRD  RFHHF+NGSCSC D+W
Sbjct: 540 CHSAMKLISNAFKREIIVRDRKRFHHFRNGSCSCNDYW 577



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 91/212 (42%), Gaps = 13/212 (6%)

Query: 88  VLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGL 147
           V +N +I  YV       A+++F  +    + P   T+  ++   A LGA+  G+ IHG 
Sbjct: 171 VTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGY 230

Query: 148 VFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVA 207
           +       D  + ++L+ MY K G ++    VF  +  K++  WN +I G    G  E A
Sbjct: 231 IRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEA 290

Query: 208 MKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREIFYRM-----PNRNLVSWNAMIN 258
           +  F  M       D  ++  ++ G S  G +   +  F  M         +  +  M++
Sbjct: 291 IAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVD 350

Query: 259 GYMKAGDVDSACELFDDMEIRDLITWNSMIAG 290
              +AG +  A EL   M ++     NSM+ G
Sbjct: 351 LLGRAGYLKEALELIRAMPMKP----NSMVLG 378


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 266/703 (37%), Positives = 409/703 (58%), Gaps = 41/703 (5%)

Query: 26  NILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHP 85
           ++L+   +  + +Q+H+ ++K  L        R+++         + YAR +FD I Q P
Sbjct: 12  SLLEKCKSMYQLKQIHSHTIKMGLSSDPLFQKRVIAFCCAHESGKMIYARQVFDAIPQ-P 70

Query: 86  SLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIH 145
           +L ++N +IK Y         ++++  +L   + PD FT P ++KG  R  A++ GK + 
Sbjct: 71  TLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYGKVLL 130

Query: 146 GLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVE 205
               K GF  + FV  + + M++    +DL R+VFD  D  ++V+WN ++ GY +  + +
Sbjct: 131 NHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFK 190

Query: 206 VAMKLFDEMP---------------------------------------DRDLFSWTCLV 226
            +  LF EM                                        +R+L     L+
Sbjct: 191 KSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILENVLI 250

Query: 227 DGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNS 286
           D F+ CG+++ A+ +F  M NR+++SW +++ G+   G +D A + FD +  RD ++W +
Sbjct: 251 DMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTA 310

Query: 287 MIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNG 346
           MI GY    RF+EAL L   M + +V P++ T+VS L+A A L  L  G W+ +YI KN 
Sbjct: 311 MIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYIDKNS 370

Query: 347 FVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFN 406
              D  +G  LI MY KCG++  A  VF+ +  K    WTAMIVGL ++G   +AL +F+
Sbjct: 371 IKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFS 430

Query: 407 KMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRT 466
            M    + P  IT+IGVL AC+HAG+V  G+ +F  M   +GI+P + HYGC+VD+L R 
Sbjct: 431 NMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRA 490

Query: 467 GYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLS 526
           G LEEA   I +MP++PN ++W SLL   R H N  + E AA  ++++ P+    YV+L 
Sbjct: 491 GRLEEAHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEMAAKQILELEPENGAVYVLLC 550

Query: 527 NIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLS 586
           NIYAA  +W+ + +VR++M +RG +K PG S +E  G ++EFV GD+SHPQ+ EI++KL 
Sbjct: 551 NIYAACKRWENLRQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSHPQSKEIYAKLE 610

Query: 587 EMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNL 646
            M   L  AG+ PDT++V L + ++ +KE  L  HSE+LAIA+ LI+      IRIVKNL
Sbjct: 611 NMMQDLIKAGYSPDTSEVFLDLGEE-DKETALYRHSEKLAIAYALISSGPGITIRIVKNL 669

Query: 647 RVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           R+C DCH + KL+S  YNRE+IVRD +RFHHF++GSCSC +FW
Sbjct: 670 RMCVDCHHMAKLVSEAYNRELIVRDKTRFHHFRHGSCSCNNFW 712


>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Vitis vinifera]
          Length = 677

 Score =  516 bits (1330), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 286/682 (41%), Positives = 397/682 (58%), Gaps = 43/682 (6%)

Query: 16  QQHLPSR---LHW-NILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNL 71
           + H PSR    H+  ++  S+T  +  Q+HA     NL  +S + ++L+S      + +L
Sbjct: 31  RAHGPSRSPETHFIPLIHASNTLPQLHQIHAQIFLHNLFSNSRVVTQLISSSCS--LKSL 88

Query: 72  HYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKG 131
            YA SIF R   HP+L ++N LI+    N R   +++ F  +L   + PD  TLP V+K 
Sbjct: 89  DYALSIF-RCFDHPNLFVFNALIRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKS 147

Query: 132 AARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSW 191
            A L  +  G+ +HG V KLG  FD FV  SLV MY                        
Sbjct: 148 VAALVDVGLGRCLHGGVMKLGLEFDSFVRVSLVDMY------------------------ 183

Query: 192 NCLIDGYVKKGEVEVAMKLFDEMPDRD----LFSWTCLVDGFSKCGKVEIAREIFYRMPN 247
                  VK GE+   ++LFDE P R+    +  W  L++G  K G +  A  +F  MP 
Sbjct: 184 -------VKIGELGFGLQLFDESPQRNKAESILLWNVLINGCCKVGDLSKAASLFEAMPE 236

Query: 248 RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETM 307
           RN  SWN++ING+++ GD+D A ELF  M  +++++W +MI G+  NG   +AL +   M
Sbjct: 237 RNAGSWNSLINGFVRNGDLDRARELFVQMPEKNVVSWTTMINGFSQNGDHEKALSMFWRM 296

Query: 308 LIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSI 367
           L   V PND T+VSAL A   +  L  G  +H+Y+  NGF ++  +GT L+ MY+KCG+I
Sbjct: 297 LEEGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYAKCGNI 356

Query: 368 ESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNAC 427
           +SA  VF     K +  W+ MI G  +HG   QAL  F KM   G+ P  + F+ +L AC
Sbjct: 357 KSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILTAC 416

Query: 428 SHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVI 487
           SH+G V+ G  +F  M  DY IEPT++HY  +VD+L R G L+EA S I+SMP+ P+FVI
Sbjct: 417 SHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVI 476

Query: 488 WMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547
           W +L    R H N ++ E  A  L+++ P   G YV LSN+YAA G+W+ V  VR +MK 
Sbjct: 477 WGALFCACRAHKNIEMAELTAEKLLQLEPKHPGSYVFLSNVYAAVGRWEDVERVRTLMKN 536

Query: 548 RGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLC 607
           RG  KDPG S IE  G +H FV GD +H + +EI  KL E+    K  G++P+T  VL  
Sbjct: 537 RGVEKDPGWSYIEVEGQVHSFVAGDHAHVRAEEISLKLEEITASAKQEGYMPETAWVLHN 596

Query: 608 IEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREI 667
           IE++ EKE  L +HSE+LA+AFGLI+    S IRIVKNLRVC DCHS+ K  S +  REI
Sbjct: 597 IEEE-EKEDALGSHSEKLALAFGLISTAPGSTIRIVKNLRVCGDCHSMMKYASKLSRREI 655

Query: 668 IVRDNSRFHHFKNGSCSCKDFW 689
           I+RD  RFHHFK+G+CSC D+W
Sbjct: 656 ILRDIKRFHHFKDGTCSCGDYW 677


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 274/693 (39%), Positives = 405/693 (58%), Gaps = 44/693 (6%)

Query: 36  ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIK 95
           E  Q+H   VK  L     I + L+  Y +    ++ +   +F+ + +  ++V +  LI 
Sbjct: 149 EGIQVHGSVVKMGLEEDVFIQNCLIHFYAE--CGHMDHGHKVFEGMSER-NVVSWTSLIC 205

Query: 96  CYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF 155
            Y    R  EA++LF ++++  + P + T+ CVI   A+L  +  G+++   + +LG   
Sbjct: 206 GYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKL 265

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM- 214
           +K ++++LV MY K G ID  +R+FD   D++LV +N ++  Y ++G    A+ + DEM 
Sbjct: 266 NKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEML 325

Query: 215 -----PDR--------------DLF---------------SW----TCLVDGFSKCGKVE 236
                PDR              DLF                W      ++D + KCGK E
Sbjct: 326 QQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPE 385

Query: 237 IAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGR 296
           +A  +F  M N+ +VSWN++  G+++ GDV+SA E+F+ +  R+ + WN+MI+G      
Sbjct: 386 MACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSL 445

Query: 297 FMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTL 356
           F +A+EL   M    +  +  T++   SA   L      +W+H+YI KNG   D  L T 
Sbjct: 446 FEDAIELFREMQGEGIKADRVTMMGIASACGYLGAPELAKWVHTYIEKNGIPCDMRLNTA 505

Query: 357 LIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT 416
           L+ M+++CG  +SA+ VF  ++++ V  WTA I  + M G    A  LFN+M   G+KP 
Sbjct: 506 LVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPD 565

Query: 417 AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTI 476
            + F+ VL ACSH G V  G   F++M  D+GI P IEHYGC+VD+L R G L EA   I
Sbjct: 566 VVLFVQVLTACSHGGQVEQGLHIFSLM-EDHGISPQIEHYGCMVDLLGRAGLLREAFDLI 624

Query: 477 ESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWD 536
           +SMPM PN V+W SLL+  R H N ++  YAA  + ++AP   G +V+LSNIYA+AG+W 
Sbjct: 625 KSMPMEPNDVVWGSLLAACRVHKNVEMATYAAERINELAPQRAGVHVLLSNIYASAGKWT 684

Query: 537 KVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAG 596
            V+ VR  ++++G RK PGSSS++  GV+HEF  GD+SHP+   I   L EM  +   AG
Sbjct: 685 DVARVRLNLREKGVRKVPGSSSVQVNGVIHEFTSGDESHPEMTHIALMLQEMNCRFSDAG 744

Query: 597 HVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVT 656
           H+PD + VLL + D++EKE  L  HSE+LAIAFGLI      PIR+VKNLR+C+DCHS  
Sbjct: 745 HIPDLSNVLLDV-DEQEKEYLLSRHSEKLAIAFGLIATGRSMPIRVVKNLRMCSDCHSFA 803

Query: 657 KLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           K+ S IYNREIIVRDN+RFH F+ G CSC D+W
Sbjct: 804 KMASIIYNREIIVRDNNRFHFFRQGLCSCCDYW 836



 Score =  211 bits (538), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 156/584 (26%), Positives = 269/584 (46%), Gaps = 54/584 (9%)

Query: 28  LKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVD-PHINNLHYARSIFD----RIL 82
           L+   T  + +QLH    K  L       ++L++   +     +L YAR  F+     + 
Sbjct: 32  LRCCKTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDVR 91

Query: 83  QHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGK 142
              +L + N LI+ Y       EA+ L+  +L   + P+++T P V+ G  ++ A  EG 
Sbjct: 92  SDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGI 151

Query: 143 QIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKG 202
           Q+HG V K+G   D F+ + L+  YA+ G +D G +VF+ M ++++VSW  LI GY +  
Sbjct: 152 QVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGD 211

Query: 203 EVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNRNL----VSWN 254
             + A+ LF EM +  +     +  C++   +K   +++   +   +    L    V  N
Sbjct: 212 RPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVN 271

Query: 255 AMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLP 314
           A+++ YMK G +D+A  LFD+   R+L+ +N++++ Y   G   EAL +L+ ML     P
Sbjct: 272 ALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRP 331

Query: 315 NDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGS-------- 366
           +  T++SA+SA A L  L  G+  H Y+++NG      +G ++I MY KCG         
Sbjct: 332 DRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVF 391

Query: 367 -----------------------IESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALD 403
                                  +ESA  VF  I ++    W  MI GL    +   A++
Sbjct: 392 DLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIE 451

Query: 404 LFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDIL 463
           LF +M   G+K   +T +G+ +AC + G   +  ++ +  I   GI   +     LVD+ 
Sbjct: 452 LFREMQGEGIKADRVTMMGIASACGYLG-APELAKWVHTYIEKNGIPCDMRLNTALVDMF 510

Query: 464 CRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLI--KVAPDTIGC 521
            R G  + A      M  R +   W + +      GN +      N ++   V PD +  
Sbjct: 511 ARCGDPQSAMQVFNKMTER-DVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVV-L 568

Query: 522 YVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVL 565
           +V +    +  GQ ++   +  +M+  G      S  IEH G +
Sbjct: 569 FVQVLTACSHGGQVEQGLHIFSLMEDHGI-----SPQIEHYGCM 607


>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  513 bits (1321), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 270/663 (40%), Positives = 392/663 (59%), Gaps = 57/663 (8%)

Query: 33  THKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNL 92
           T ++ +QLHA+ +KT  I     ++ ++  +      ++ YAR++F R +  P+   +N 
Sbjct: 31  TPRDLKQLHAIFIKTGQIQDPLTAAEVIK-FCAFSSRDIDYARAVF-RQMPEPNCFCWNT 88

Query: 93  LIKCYVFNQRSH---EALTLFCDLL-DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLV 148
           +++        H   EAL LF  +L D  + P+ FT P V+K  AR   ++EGKQIHGL+
Sbjct: 89  ILRVLAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLI 148

Query: 149 FKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAM 208
            K GF  D+FV+S+LV MY     ++                                  
Sbjct: 149 VKFGFHEDEFVISNLVRMYVMCAVME---------------------------------- 174

Query: 209 KLFDEMPDRDLFSWTC--LVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDV 266
                    D +S  C  +VD    C       E+  R  + N+V WN MI+G ++ GD+
Sbjct: 175 ---------DAYSLFCKNVVDFDGSC-----QMELDKRKQDGNVVLWNIMIDGQVRLGDI 220

Query: 267 DSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326
            SA  LFD+M  R +++WN MI+GY  NG F+EA+ L + M   ++ PN  TLVS L A+
Sbjct: 221 KSAKNLFDEMPQRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAI 280

Query: 327 AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWT 386
           A +  L  G+W+H Y  KN   +D VLG+ L+ MYSKCGSI+ AL VF  + K+    W+
Sbjct: 281 ARIGALELGKWIHLYAGKNKIEIDDVLGSALVDMYSKCGSIDEALQVFETLPKRNAITWS 340

Query: 387 AMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIND 446
           A+I    MHG A  A+  F+ M + G+ P  + +IG+L+ACSHAGLV +GR +F+ M+  
Sbjct: 341 AIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKV 400

Query: 447 YGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEY 506
            G++P IEHYGC+VD+L R G+LEEA+  I +MP+ P+ VIW +LL   + H N  +GE 
Sbjct: 401 VGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKMHKNLKMGER 460

Query: 507 AANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLH 566
            A  L+++AP   G YV LSN+YA+ G W+ V+ VR  MK    RKDPG S IE  G++H
Sbjct: 461 VAETLMELAPHDSGSYVALSNLYASLGNWEAVARVRLKMKGMDIRKDPGCSWIEIHGIIH 520

Query: 567 EFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLA 626
           EF+V D SH +  EI + L EM  KL++ G+ P+T +V L   D++E+   L+ HSE++A
Sbjct: 521 EFLVEDDSHSKAKEIQAMLGEMSMKLRSNGYRPNTLEVFLNT-DEQERARALQYHSEKIA 579

Query: 627 IAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCK 686
           +AFGLI+   + P++IVKNLR+C DCH+  KL+S IY R+IIVRD  RFH F++GSCSC 
Sbjct: 580 VAFGLISTAPQHPLKIVKNLRICEDCHASLKLISLIYKRQIIVRDRKRFHQFEHGSCSCM 639

Query: 687 DFW 689
           D+W
Sbjct: 640 DYW 642



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 81/349 (23%), Positives = 149/349 (42%), Gaps = 58/349 (16%)

Query: 31  SSTHKETQQLHALSVKTNLIYHSGISSRLLSLYV-------------------------- 64
           +S  +E +Q+H L VK        + S L+ +YV                          
Sbjct: 135 ASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQME 194

Query: 65  -------------------DPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHE 105
                                 + ++  A+++FD + Q  S+V +N++I  Y  N    E
Sbjct: 195 LDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQR-SVVSWNVMISGYAQNGHFIE 253

Query: 106 ALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVS 165
           A+ LF ++    + P+  TL  V+   AR+GA++ GK IH    K     D  + S+LV 
Sbjct: 254 AINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDVLGSALVD 313

Query: 166 MYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL----FS 221
           MY+K G ID   +VF+ +  ++ ++W+ +I  +   G  E A+  F  M    +     +
Sbjct: 314 MYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVA 373

Query: 222 WTCLVDGFSKCGKVEIAREIFYRMP-----NRNLVSWNAMINGYMKAGDVDSACELFDDM 276
           +  ++   S  G VE  R  F  M         +  +  M++   +AG ++ A EL  +M
Sbjct: 374 YIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNM 433

Query: 277 EIR-DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS 324
            I  D + W +++   +++        + ET++  ++ P+D+    ALS
Sbjct: 434 PIEPDDVIWKALLGACKMHKNLKMGERVAETLM--ELAPHDSGSYVALS 480


>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  513 bits (1320), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 270/663 (40%), Positives = 392/663 (59%), Gaps = 57/663 (8%)

Query: 33  THKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNL 92
           T ++ +QLHA+ +KT  I     ++ ++  +      ++ YAR++F R +  P+   +N 
Sbjct: 31  TPRDLKQLHAIFIKTGQIQDPLTAAEVIK-FCAFSSRDIDYARAVF-RQMPEPNCFCWNT 88

Query: 93  LIKCYVFNQRSH---EALTLFCDLL-DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLV 148
           +++        H   EAL LF  +L D  + P+ FT P V+K  AR   ++EGKQIHGL+
Sbjct: 89  ILRILAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLI 148

Query: 149 FKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAM 208
            K GF  D+FV+S+LV MY     ++                                  
Sbjct: 149 VKFGFHEDEFVISNLVRMYVMCAVME---------------------------------- 174

Query: 209 KLFDEMPDRDLFSWTC--LVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDV 266
                    D +S  C  +VD    C       E+  R  + N+V WN MI+G ++ GD+
Sbjct: 175 ---------DAYSLFCKNVVDFDGSC-----QMELDKRKQDGNVVLWNIMIDGQVRLGDI 220

Query: 267 DSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326
            SA  LFD+M  R +++WN MI+GY  NG F+EA+ L + M   ++ PN  TLVS L A+
Sbjct: 221 KSAKNLFDEMPPRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAI 280

Query: 327 AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWT 386
           A +  L  G+W+H Y  KN   +D VLG+ L+ MYSKCGSI+ AL VF  + K+    W+
Sbjct: 281 ARIGALELGKWIHLYAGKNKVEIDDVLGSALVDMYSKCGSIDKALQVFETLPKRNAITWS 340

Query: 387 AMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIND 446
           A+I    MHG A  A+  F+ M + G+ P  + +IG+L+ACSHAGLV +GR +F+ M+  
Sbjct: 341 AIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKV 400

Query: 447 YGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEY 506
            G++P IEHYGC+VD+L R G+LEEA+  I +MP+ P+ VIW +LL   + H N  +GE 
Sbjct: 401 VGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKMHKNLKMGER 460

Query: 507 AANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLH 566
            A  L+++AP   G YV LSN+YA+ G W+ V+ VR  MK    RKDPG S IE  G++H
Sbjct: 461 VAETLMELAPHDSGSYVALSNLYASLGNWEAVARVRLKMKGMDIRKDPGCSWIEIHGIIH 520

Query: 567 EFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLA 626
           EF+V D SH +  EI + L EM  KL++ G+ P+T +V L   D++E+   L+ HSE++A
Sbjct: 521 EFLVEDDSHSKAKEIQAMLGEMSMKLRSNGYRPNTLEVFLNT-DEQERARALQYHSEKIA 579

Query: 627 IAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCK 686
           +AFGLI+   + P++IVKNLR+C DCH+  KL+S IY R+IIVRD  RFH F++GSCSC 
Sbjct: 580 VAFGLISTAPQHPLKIVKNLRICEDCHASLKLISLIYKRQIIVRDRKRFHQFEHGSCSCM 639

Query: 687 DFW 689
           D+W
Sbjct: 640 DYW 642



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 80/349 (22%), Positives = 148/349 (42%), Gaps = 58/349 (16%)

Query: 31  SSTHKETQQLHALSVKTNLIYHSGISSRLLSLYV-------------------------- 64
           +S  +E +Q+H L VK        + S L+ +YV                          
Sbjct: 135 ASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQME 194

Query: 65  -------------------DPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHE 105
                                 + ++  A+++FD +    S+V +N++I  Y  N    E
Sbjct: 195 LDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPR-SVVSWNVMISGYAQNGHFIE 253

Query: 106 ALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVS 165
           A+ LF ++    + P+  TL  V+   AR+GA++ GK IH    K     D  + S+LV 
Sbjct: 254 AINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVEIDDVLGSALVD 313

Query: 166 MYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL----FS 221
           MY+K G ID   +VF+ +  ++ ++W+ +I  +   G  E A+  F  M    +     +
Sbjct: 314 MYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVA 373

Query: 222 WTCLVDGFSKCGKVEIAREIFYRMP-----NRNLVSWNAMINGYMKAGDVDSACELFDDM 276
           +  ++   S  G VE  R  F  M         +  +  M++   +AG ++ A EL  +M
Sbjct: 374 YIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNM 433

Query: 277 EIR-DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS 324
            I  D + W +++   +++        + ET++  ++ P+D+    ALS
Sbjct: 434 PIEPDDVIWKALLGACKMHKNLKMGERVAETLM--ELAPHDSGSYVALS 480


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  513 bits (1320), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 275/693 (39%), Positives = 405/693 (58%), Gaps = 43/693 (6%)

Query: 36  ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIK 95
           E  Q+H   +K  L     +S+ L+  Y +     +   R +FD +L+  ++V +  LI 
Sbjct: 148 EGVQVHGAVLKMGLEGDIFVSNSLIHFYAE--CGKVDLGRKLFDGMLER-NVVSWTSLIN 204

Query: 96  CYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF 155
            Y     S EA++LF  + +  + P+  T+ CVI   A+L  ++ GK++   + +LG   
Sbjct: 205 GYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMEL 264

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM- 214
              ++++LV MY K G+I   R++FD   +K+LV +N ++  YV        + + DEM 
Sbjct: 265 STIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEML 324

Query: 215 -----PDR-----------------------------DLFSW----TCLVDGFSKCGKVE 236
                PD+                              L  W      ++D + KCGK E
Sbjct: 325 QKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKRE 384

Query: 237 IAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGR 296
            A ++F  MPN+ +V+WN++I G ++ GD++ A  +FD+M  RDL++WN+MI        
Sbjct: 385 AACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSM 444

Query: 297 FMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTL 356
           F EA+EL   M    +  +  T+V   SA   L  L+  +W+ +YI KN   VD  LGT 
Sbjct: 445 FEEAIELFREMQNQGIPGDRVTMVGIASACGYLGALDLAKWVCTYIEKNDIHVDLQLGTA 504

Query: 357 LIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT 416
           L+ M+S+CG   SA+ VF+ + K+ V  WTA I  + M G    A++LFN+M    +KP 
Sbjct: 505 LVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPD 564

Query: 417 AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTI 476
            + F+ +L ACSH G V+ GR+ F  M   +GI P I HYGC+VD+L R G LEEA   I
Sbjct: 565 DVVFVALLTACSHGGSVDQGRQLFWSMEKAHGIRPHIVHYGCMVDLLGRAGLLEEAVDLI 624

Query: 477 ESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWD 536
           +SMP+ PN V+W SLL+  R H N ++  YAA  L ++AP+ +G +V+LSNIYA+AG+W 
Sbjct: 625 QSMPIEPNDVVWGSLLAACRKHKNVELAHYAAEKLTQLAPERVGIHVLLSNIYASAGKWT 684

Query: 537 KVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAG 596
            V+ VR  MK++G +K PGSSSIE +G++HEF  GD+SH +   I   L E+  +L  AG
Sbjct: 685 DVARVRLQMKEKGVQKVPGSSSIEVQGLIHEFTSGDESHAENTHIGLMLEEINCRLSEAG 744

Query: 597 HVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVT 656
           +VPDTT VLL + D++EKE  L  HSE+LA+A+GLI      PIR+VKNLR+C+DCHS  
Sbjct: 745 YVPDTTNVLLDV-DEQEKEHLLSRHSEKLAMAYGLITTGQGIPIRVVKNLRMCSDCHSFA 803

Query: 657 KLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           KL+S +YNREI VRDN+R+H FK G CSC+D+W
Sbjct: 804 KLVSKLYNREITVRDNNRYHFFKEGFCSCRDYW 836



 Score =  213 bits (541), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 154/565 (27%), Positives = 277/565 (49%), Gaps = 49/565 (8%)

Query: 33  THKETQQLHALSVKTNLIYHSGISS--RLLSLYVD-PHINNLHYARSIF-DRILQHPSLV 88
           T KE +QLH   +K  L+ H   S+  +L++  V    + +L YAR+ F D      SL 
Sbjct: 37  TLKELKQLHCDMMKKGLLCHKPASNLNKLIASSVQIGTLESLDYARNAFGDDDGNMASLF 96

Query: 89  LYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLV 148
           +YN LI+ Y       +A+ L+  +L   ++PD +T P ++   +++ A+ EG Q+HG V
Sbjct: 97  MYNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSEGVQVHGAV 156

Query: 149 FKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAM 208
            K+G   D FV +SL+  YA+ G++DLGR++FD M ++++VSW  LI+GY  +   + A+
Sbjct: 157 LKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKEAV 216

Query: 209 KLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNRNL----VSWNAMINGY 260
            LF +M +  +     +  C++   +K   +E+ +++   +    +    +  NA+++ Y
Sbjct: 217 SLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIMVNALVDMY 276

Query: 261 MKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLV 320
           MK GD+ +A ++FD+   ++L+ +N++++ Y  +    + L +L+ ML     P+  T++
Sbjct: 277 MKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTML 336

Query: 321 SALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKK 380
           S ++A A L  L+ G+  H+Y+++NG      +   +I MY KCG  E+A  VF  +  K
Sbjct: 337 STIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFEHMPNK 396

Query: 381 KVGHWTAMIVGLGMHG-------------------------------MATQALDLFNKMC 409
            V  W ++I GL   G                               M  +A++LF +M 
Sbjct: 397 TVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQ 456

Query: 410 RMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYL 469
             G+    +T +G+ +AC + G + D  ++    I    I   ++    LVD+  R G  
Sbjct: 457 NQGIPGDRVTMVGIASACGYLGAL-DLAKWVCTYIEKNDIHVDLQLGTALVDMFSRCGDP 515

Query: 470 EEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLI--KVAPDTIGCYVVLSN 527
             A    + M  R +   W + +      GN +      N ++  KV PD +  +V L  
Sbjct: 516 SSAMHVFKRMEKR-DVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPDDV-VFVALLT 573

Query: 528 IYAAAGQWDKVSEV-REMMKKRGFR 551
             +  G  D+  ++   M K  G R
Sbjct: 574 ACSHGGSVDQGRQLFWSMEKAHGIR 598


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 266/634 (41%), Positives = 387/634 (61%), Gaps = 19/634 (2%)

Query: 70  NLHYARSIFDRILQHP--SLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLL-PDNFTLP 126
           +L YA  +F R+  HP  S   YN+LI+ ++      +AL LF ++LD   + PD  T+ 
Sbjct: 117 HLSYAIRLF-RLGPHPPRSARSYNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVA 175

Query: 127 CVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK 186
             +K  +R+  +  G+ +    FK GF  D+FVL+SL+ MYA  G++     +F  +  K
Sbjct: 176 NTVKSCSRMCDLSVGRGVQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVK 235

Query: 187 DLVSWNCLIDGYVKKGEVEVAMKLFDEMPD-RDLFSWTCLVDGFSKCGKV---------- 235
            +++WN +I GYVK G+ +  +++F  M + R  F    L+   + CG++          
Sbjct: 236 GVIAWNAMIAGYVKNGDWKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLGQWIA 295

Query: 236 EIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNG 295
           E A E    + +RNL +  A+++ Y K G++D A  LFD M  RD++ W++MI+GY  + 
Sbjct: 296 EYAEEKGM-LRSRNLAT--ALVDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSD 352

Query: 296 RFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGT 355
           R  EAL +   M   +V PND T+VS LSA A L  L  G+W+HSYI +    +  +LGT
Sbjct: 353 RCREALAIFNEMQGTEVNPNDVTMVSVLSACAVLGALETGKWVHSYIRRKDLPLTVILGT 412

Query: 356 LLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKP 415
            L+  Y+KCG I+ A+  F ++  +    WTA+I G+  +G + +AL+LF+ M    ++P
Sbjct: 413 ALVDFYAKCGCIKDAVKAFESMPVRNTWTWTALIKGMASNGRSREALELFSSMLEANIEP 472

Query: 416 TAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKST 475
           T +TFIGVL ACSH  LV +GRR+F  M  DYGI P IEHYGC+VD+L R G ++EA   
Sbjct: 473 TDVTFIGVLLACSHGCLVEEGRRHFTSMTQDYGICPRIEHYGCMVDLLGRAGLIDEAYQF 532

Query: 476 IESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQW 535
           I +MP+ PN V+W +LLS    H N +IGE A   ++ + P   G Y++LSN YA+ GQW
Sbjct: 533 IRNMPIEPNAVVWRALLSACTVHKNVEIGEEALKQIVPLDPCHSGNYILLSNTYASVGQW 592

Query: 536 DKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAA 595
              + VR+ MK++G  K PG S IE  G + EF   D  HPQ  EI+ K+ EM   +K  
Sbjct: 593 KNAAMVRKEMKEKGVEKIPGCSLIELEGTIFEFFAEDSEHPQLTEIYEKVHEMIENIKMV 652

Query: 596 GHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSV 655
           G++P+T    L + D+ EK+  + +HSE+LAIAFGL+  +  + IR+ KNLRVC DCHS 
Sbjct: 653 GYIPNTADARLDV-DEYEKQVSVSHHSEKLAIAFGLMKSRPGATIRLSKNLRVCIDCHSA 711

Query: 656 TKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           TKL+S +YNREIIVRD +RFHHFK+G CSC D+W
Sbjct: 712 TKLISKVYNREIIVRDRNRFHHFKDGLCSCNDYW 745


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 270/662 (40%), Positives = 402/662 (60%), Gaps = 44/662 (6%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYV-DPHINNLHYARSIFDRILQHPSLVLYNLLIKC 96
           + +HA  +KT L   +   S+L+   +  PH + L YA S+F+ I Q P+L+++N + + 
Sbjct: 7   RMIHAQMIKTGLHNTNYALSKLIEFCILSPHFDGLPYAISVFETI-QEPNLLIWNTMFRG 65

Query: 97  YVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFD 156
           +  +     AL L+  ++   LLP+++T P ++K  A+  A KEG+QIHG V KLG   D
Sbjct: 66  HALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGCDLD 125

Query: 157 KFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD 216
            +V +SL+SMY + G ++   +VFD    +D+VS+  LI GY  +G +E A K+FDE+P 
Sbjct: 126 LYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMFDEIPV 185

Query: 217 RDLFSWTCLVDGFSKCGKVEIAREIFYRM------PN--------------------RNL 250
           +D+ SW  ++ G+++ G  + A E+F  M      P+                    R +
Sbjct: 186 KDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQV 245

Query: 251 VSW-------------NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRF 297
            SW             NA+I+ Y K G++++AC LF+ +  +D+I+WN++I GY     +
Sbjct: 246 HSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHMNLY 305

Query: 298 MEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVK--NGFVVDGVLGT 355
            EAL L + ML     PND T++S L A A L  ++ GRW+H YI K   G      L T
Sbjct: 306 KEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANASSLRT 365

Query: 356 LLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKP 415
            LI MY+KCG IE+A  VF +I  K +  W AMI G  MHG A  + D+F++M + G++P
Sbjct: 366 SLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRMRKNGIEP 425

Query: 416 TAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKST 475
             ITF+G+L+ACSH+G+++ GR  F  M  DY + P +EHYGC++D+L  +G  +EA+  
Sbjct: 426 DDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEM 485

Query: 476 IESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQW 535
           I +M M P+ VIW SLL   + HGN ++GE  A NLIK+ P+  G YV+LSNIYA AG+W
Sbjct: 486 INTMEMEPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPENPGSYVLLSNIYATAGRW 545

Query: 536 DKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAA 595
           ++V+  R ++  +G +K PG SSIE   V+HEF++GDK HP+  EI+  L EM   L+ A
Sbjct: 546 NEVANTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEA 605

Query: 596 GHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSV 655
           G VPDT++VL  +E++  KE  L +HSE+LAIAFGLI+ K  + + IVKNLRVC +CH  
Sbjct: 606 GFVPDTSEVLQEMEEEW-KEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEA 664

Query: 656 TK 657
            K
Sbjct: 665 YK 666



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 124/490 (25%), Positives = 215/490 (43%), Gaps = 87/490 (17%)

Query: 31  SSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVD--------------PHINNLHY--- 73
           S   KE QQ+H   +K        + + L+S+YV               PH + + Y   
Sbjct: 104 SKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTAL 163

Query: 74  ------------ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPD 121
                       A+ +FD I     +V +N +I  Y       EAL LF D++   + PD
Sbjct: 164 IKGYASRGYIENAQKMFDEI-PVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPD 222

Query: 122 NFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFD 181
             T+  V+   A+ G+I+ G+Q+H  +   GFG +  ++++L+ +Y+K GE++    +F+
Sbjct: 223 ESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFE 282

Query: 182 AMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM----PDRDLFSWTCLVDGFSKCGKVEI 237
            +  KD++SWN LI GY      + A+ LF EM       +  +   ++   +  G ++I
Sbjct: 283 GLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDI 342

Query: 238 AREIFYRMPNRNLVSWNA------MINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGY 291
            R I   +  R     NA      +I+ Y K GD+++A ++F+ +  + L +WN+MI G+
Sbjct: 343 GRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGF 402

Query: 292 ELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDG 351
            ++GR   + ++   M    + P+D T V  LSA +   +L+ GR               
Sbjct: 403 AMHGRADASFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGR--------------- 447

Query: 352 VLGTLLIQMYSKCGSIESALTVFRAISK-----KKVGHWTAMIVGLGMHGMATQALDLFN 406
                                +FR++++      K+ H+  MI  LG  G+  +A ++ N
Sbjct: 448 --------------------HIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMIN 487

Query: 407 KMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP-TIEHYGCLVDILCR 465
               M M+P  + +  +L AC   G V  G  +   +I    IEP     Y  L +I   
Sbjct: 488 T---MEMEPDGVIWCSLLKACKMHGNVELGESFAQNLIK---IEPENPGSYVLLSNIYAT 541

Query: 466 TGYLEEAKST 475
            G   E  +T
Sbjct: 542 AGRWNEVANT 551



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/229 (20%), Positives = 99/229 (43%), Gaps = 8/229 (3%)

Query: 331 VLNKGRWMHSYIVKNGFVVDGVLGTLLIQ---MYSKCGSIESALTVFRAISKKKVGHWTA 387
           +L   R +H+ ++K G        + LI+   +      +  A++VF  I +  +  W  
Sbjct: 2   ILQSLRMIHAQMIKTGLHNTNYALSKLIEFCILSPHFDGLPYAISVFETIQEPNLLIWNT 61

Query: 388 MIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDY 447
           M  G  +      AL L+  M  +G+ P + TF  +L +C+ +    +G++    ++   
Sbjct: 62  MFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLK-L 120

Query: 448 GIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYA 507
           G +  +  +  L+ +  + G LE+A    +  P R + V + +L+ G   + ++   E A
Sbjct: 121 GCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHR-DVVSYTALIKG---YASRGYIENA 176

Query: 508 ANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGS 556
                ++    +  +  + + YA  G + +  E+ + M K   R D  +
Sbjct: 177 QKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDEST 225


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 263/658 (39%), Positives = 392/658 (59%), Gaps = 51/658 (7%)

Query: 74  ARSIFDRILQ---HPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIK 130
            + I D +L+      + + N LI  Y       +A  LF    D   + D+ +   ++ 
Sbjct: 160 GKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLF----DESPVLDSVSWNSILA 215

Query: 131 GAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVS 190
           G  + G ++E K    L+F      +    +S++ +  K G++    ++F+ MD+KD+VS
Sbjct: 216 GYVKKGDVEEAK----LIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVS 271

Query: 191 WNCLIDGYVKKGEVEVAMKLFDEMPDRDL-FSWTCLVDGFSKC----------------- 232
           W+ LI GY + G  E A+ +F EM    +      +V   S C                 
Sbjct: 272 WSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVI 331

Query: 233 ---------------------GKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACE 271
                                G++  A+++F    N + +SWN+MI+G MK G V+ A  
Sbjct: 332 RMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARA 391

Query: 272 LFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAV 331
           LFD M  +D+++W+++I+GY  +  F E L L   M +G + P++  LVS +SA   LA 
Sbjct: 392 LFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHLAA 451

Query: 332 LNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVG 391
           L++G+W+H+YI KNG  V+ +LGT L+ MY KCG +E+AL VF  + +K V  W A+I+G
Sbjct: 452 LDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKGVSSWNALIIG 511

Query: 392 LGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP 451
           L ++G+  ++LD+F++M   G+ P  ITF+GVL AC H GLV++GR +F  MI  +GIEP
Sbjct: 512 LAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEP 571

Query: 452 TIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNL 511
            ++HYGC+VD+L R G L EA+  IESMPM P+   W +LL   + HG+ ++GE     L
Sbjct: 572 NVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGRKL 631

Query: 512 IKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVG 571
           I++ PD  G +V+LSNI+A+ G W+ V EVR MMK++G  K PG S IE  GV+HEF+ G
Sbjct: 632 IELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEANGVVHEFLAG 691

Query: 572 DKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGL 631
           DK+HP  +++   L+EM  +LK  G+ PDT +V L I D++EKE  L  HSE+LAIAFGL
Sbjct: 692 DKTHPWINKVEGMLNEMAKRLKMEGYAPDTNEVSLDI-DEEEKETTLFRHSEKLAIAFGL 750

Query: 632 INVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           + +   +PIRI+KNLR+CNDCH+  KL+S  Y REI+VRD  RFH+FK G+CSC D+W
Sbjct: 751 LTISPPTPIRIMKNLRICNDCHTAAKLISKAYAREIVVRDRHRFHYFKEGACSCMDYW 808



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 146/531 (27%), Positives = 248/531 (46%), Gaps = 72/531 (13%)

Query: 7   QHSSPIHALQQHLPSRLHWNILKFSSTH-------KETQQLHALSVKTNLIYHSGISSRL 59
           Q SS + +   H P+      L    TH       K+  ++ +  + T  I  +  +SRL
Sbjct: 20  QLSSALKSTFNHKPTFKPTITLSILETHLHNCHNLKQFNRILSQMILTGFISDTFAASRL 79

Query: 60  LSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLL 119
           L    D     L Y+  IFDRI ++ +  ++N +++ Y+ +  + +AL L+  ++   + 
Sbjct: 80  LKFSTDSPFIGLDYSLQIFDRI-ENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVG 138

Query: 120 PDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRV 179
           PDN+T P V++  A       GK+IH  V K+GF                          
Sbjct: 139 PDNYTYPLVVQACAVRLLEFGGKEIHDHVLKVGF-------------------------- 172

Query: 180 FDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAR 239
                D D+   N LI+ Y   G +  A KLFDE P  D  SW  ++ G+ K G VE A+
Sbjct: 173 -----DSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEEAK 227

Query: 240 EIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFME 299
            IF +MP RN+V+ N+MI    K G V  A +LF++M+ +D+++W+++I+GYE NG + E
Sbjct: 228 LIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEE 287

Query: 300 ALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQ 359
           AL +   M    +  ++  +VS LSA A L+++  G+ +H  +++ G      L   LI 
Sbjct: 288 ALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIH 347

Query: 360 MYS-------------------------------KCGSIESALTVFRAISKKKVGHWTAM 388
           MYS                               KCGS+E A  +F  + +K +  W+A+
Sbjct: 348 MYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAV 407

Query: 389 IVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYG 448
           I G   H   ++ L LF++M    ++P     + V++AC+H   ++ G ++ +  I   G
Sbjct: 408 ISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHLAALDQG-KWVHAYIRKNG 466

Query: 449 IEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
           ++  +     L+D+  + G +E A      M  +     W +L+ G   +G
Sbjct: 467 LKVNVILGTTLLDMYMKCGCVENALEVFNGMEEK-GVSSWNALIIGLAVNG 516


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  506 bits (1304), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 250/652 (38%), Positives = 398/652 (61%), Gaps = 47/652 (7%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +Q+H+ ++KT +I +  I +++LS        ++ YAR +FD I + PS+  +N++ K Y
Sbjct: 31  KQIHSRTIKTGIICNPIIQNKILSFCCSREFGDMCYARQLFDTIPE-PSVFSWNIMFKGY 89

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
                    ++L+ ++L+R + PD +T P + KG  R  A++ G+++H  V K G     
Sbjct: 90  SRIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRSVALQLGRELHCHVVKYGL---- 145

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
                                      D ++ + N LI+ Y   G +++A  +FD     
Sbjct: 146 ---------------------------DSNVFAHNALINMYSLCGLIDMARGIFDMSCKS 178

Query: 218 DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDME 277
           D+ +W  ++ G+++  K              +++SW A++ G++  G VD+A + F  M 
Sbjct: 179 DVVTWNAMISGYNRIKK--------------DVISWTAIVTGFVNTGQVDAARKYFHKMP 224

Query: 278 IRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRW 337
            RD ++W +MI GY     + EAL L   M    + P++ T+VS L+A A L  L  G W
Sbjct: 225 ERDHVSWTAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELGEW 284

Query: 338 MHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGM 397
           + +YI KN    D  +G  LI MY KCG++E AL++F  + ++    WTAM+VGL ++G 
Sbjct: 285 IRTYIDKNKVKNDTFVGNALIDMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGC 344

Query: 398 ATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYG 457
             +AL++F++M +  + P  +T++GVL+AC+H G+V++G+++F  M   +GIEP I HYG
Sbjct: 345 GEEALNMFSQMLKASVTPDEVTYVGVLSACTHTGMVDEGKKFFASMTARHGIEPNIAHYG 404

Query: 458 CLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPD 517
           C+VD+L + G+L+EA   I++MPM+PN ++W +LL   R H + ++ E A   ++++ P+
Sbjct: 405 CMVDLLGKAGHLKEAHEIIKNMPMKPNSIVWGALLGACRIHKDAEMAERAIEQILELEPN 464

Query: 518 TIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQ 577
               YV+  NIYAA  +WDK+ E+R++M  RG +K PG S IE  G++HEFV GD+SHPQ
Sbjct: 465 NGAVYVLQCNIYAACNKWDKLRELRQVMMDRGIKKTPGCSLIEMNGIVHEFVAGDQSHPQ 524

Query: 578 TDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSR 637
           T EI+ KL++M + LK AG+ P+T++V L I ++ +KE  +  HSE+LAIAFGLIN    
Sbjct: 525 TKEIYGKLNKMTSDLKIAGYSPNTSEVFLDIAEE-DKENAVYRHSEKLAIAFGLINSGPG 583

Query: 638 SPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
             IRIVKNLR+C DCH V KL+S +Y+RE+IVRD +RFHHF++GSCSCKD+W
Sbjct: 584 VTIRIVKNLRMCIDCHHVAKLVSKVYDREVIVRDRTRFHHFRHGSCSCKDYW 635


>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 775

 Score =  506 bits (1304), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 284/772 (36%), Positives = 428/772 (55%), Gaps = 112/772 (14%)

Query: 26  NILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNL---HYARSIFDRIL 82
           ++L+     +  +QL + ++ T LI     +SRL++     H   L   HY+  IF+  L
Sbjct: 8   SLLQSCKCPRHFKQLLSQTILTGLITDPYAASRLINF--SSHSTTLVPFHYSLRIFNH-L 64

Query: 83  QHPSLVLYNLLIKCYVFNQRS-HEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEG 141
           ++P+   +N +++ +++ Q S H+AL  +   L     PD++T P +++  A   +  EG
Sbjct: 65  RNPNTFTWNTIMRAHLYLQNSPHQALLHYKLFLASHAKPDSYTYPILLQCCAARVSEFEG 124

Query: 142 KQIHGLVFKLGFGFDKFVLSSLVSMYA-------------------------------KF 170
           +Q+H      GF  D +V ++L+++YA                               + 
Sbjct: 125 RQLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLLAGYVQA 184

Query: 171 GEIDLGRRVFDAMDDK---------------------------------DLVSWNCLIDG 197
           GE++   RVF+ M ++                                 D+VSW+ ++  
Sbjct: 185 GEVEEAERVFEGMPERNTIASNSMIALFGRKGCVEKARRIFNGVRGRERDMVSWSAMVSC 244

Query: 198 YVKKGEVEVAMKLFDEMP----------------------DRDLFSWT------------ 223
           Y +    E A+ LF EM                       + ++  W             
Sbjct: 245 YEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGRWVHGLAVKVGVEDY 304

Query: 224 -----CLVDGFSKCGKVEIAREIFYRMPNR-NLVSWNAMINGYMKAGDVDSACELFDDME 277
                 L+  +S CG++  AR IF       +L+SWN+MI+GY++ G +  A  LF  M 
Sbjct: 305 VSLKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEMLFYSMP 364

Query: 278 IRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRW 337
            +D+++W++MI+GY  +  F EAL L + M +  V P++  LVSA+SA   LA L+ G+W
Sbjct: 365 EKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISACTHLATLDLGKW 424

Query: 338 MHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGM 397
           +H+YI +N   V+ +L T LI MY KCG +E+AL VF A+ +K V  W A+I+GL M+G 
Sbjct: 425 IHAYISRNKLQVNVILSTTLIDMYMKCGCVENALEVFYAMEEKGVSTWNAVILGLAMNGS 484

Query: 398 ATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYG 457
             Q+L++F  M + G  P  ITF+GVL AC H GLVNDGR YFN MI+++ IE  I+HYG
Sbjct: 485 VEQSLNMFADMKKTGTVPNEITFMGVLGACRHMGLVNDGRHYFNSMIHEHKIEANIKHYG 544

Query: 458 CLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPD 517
           C+VD+L R G L+EA+  I+SMPM P+   W +LL   R H + ++GE     LI++ PD
Sbjct: 545 CMVDLLGRAGLLKEAEELIDSMPMAPDVATWGALLGACRKHRDNEMGERLGRKLIQLQPD 604

Query: 518 TIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQ 577
             G +V+LSNIYA+ G W  V E+R +M + G  K PG S IE  G +HEF+ GDK+HPQ
Sbjct: 605 HDGFHVLLSNIYASKGNWGNVLEIRGIMAQHGVVKTPGCSMIEANGTVHEFLAGDKTHPQ 664

Query: 578 TDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSR 637
            ++I   L  +  KLK  G+VP T++V L I D++EKE  L  HSE+LA+AFGLI +   
Sbjct: 665 INDIEHMLDVVAAKLKIEGYVPTTSEVSLDI-DEEEKETALFRHSEKLAVAFGLITISPP 723

Query: 638 SPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           +PIR+ KNLR+CNDCH+V KL+S  ++R+I+VRD  RFHHFK+G+CSC DFW
Sbjct: 724 TPIRVTKNLRICNDCHTVVKLISKAFDRDIVVRDRHRFHHFKHGACSCMDFW 775


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 285/727 (39%), Positives = 405/727 (55%), Gaps = 93/727 (12%)

Query: 3   TQTLQHSSPIHALQ-QHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLS 61
           T+T Q+ SP H  + Q  PS    N L       +TQQLHA   +T              
Sbjct: 32  TKTPQNPSPQHQNKHQKHPSFTPNNHLCLD----QTQQLHAHITRT-------------- 73

Query: 62  LYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPD 121
                H N  H  +  F     HP   L       Y + ++           LD  +  D
Sbjct: 74  -----HFN--HAQQVSFSPFESHPRYAL-----NTYTYMRK-----------LD--IEVD 108

Query: 122 NFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFD 181
           +F +P V+K  +++   + GK+IHG   K G   D FV+++L+ MY++ G +   R +FD
Sbjct: 109 SFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQMYSECGSLVSARLLFD 168

Query: 182 AMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREI 241
            M ++D+VSW+ +I  Y+          LF     R + SWT ++ G+ +C  +E    +
Sbjct: 169 KMSERDVVSWSTMIRAYIT---------LFYGFSQRSIVSWTAMIAGYIRCNDLEEGERL 219

Query: 242 FYRM------PN----------------------------RN-----LVSWNAMINGYMK 262
           F RM      PN                            RN     L    A+++ Y K
Sbjct: 220 FVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALATALVDMYGK 279

Query: 263 AGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSA 322
            G++ SA  +FD M+ +D++TW +MI+ Y        A +L   M    V PN+ T+VS 
Sbjct: 280 CGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVSL 339

Query: 323 LSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKV 382
           LS  A    L+ G+W H+YI K G  VD +L T LI MY+KCG I  A  +F     + +
Sbjct: 340 LSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSEAIDRDI 399

Query: 383 GHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNM 442
             W  M+ G GMHG   +AL LF +M  +G+KP  ITFIG L+ACSHAGLV +G+  F  
Sbjct: 400 CTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLVVEGKGLFEK 459

Query: 443 MINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKD 502
           MI+D+G+ P +EHYGC+VD+L R G L+EA   IESMP+ PN  IW ++L+  + H N +
Sbjct: 460 MIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAMLAACKIHKNSN 519

Query: 503 IGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHR 562
           +GE AA  L+ + P   G  V++SNIYAAA +W+ V+ +R+ +K  G +K+PG SSIE  
Sbjct: 520 MGELAARELLALEPQNCGYKVLMSNIYAAANRWNDVAGMRKAVKDTGIKKEPGMSSIEVN 579

Query: 563 GVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHS 622
           G++H+F +GD +HP  ++I   L+EM  KLK AG++PDT+ VL  I D++EKE  L  HS
Sbjct: 580 GLVHDFKMGDTAHPLIEKISEMLAEMSKKLKEAGYLPDTSVVLHNI-DEEEKETALNYHS 638

Query: 623 ERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGS 682
           E+LA+AFGLI+    +PIR+VKNLR+C+DCH+VTKLLS IY R IIVRD +RFHHF+ GS
Sbjct: 639 EKLAMAFGLISTAPGTPIRVVKNLRICDDCHTVTKLLSKIYKRVIIVRDRNRFHHFREGS 698

Query: 683 CSCKDFW 689
           CSC  +W
Sbjct: 699 CSCGGYW 705


>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
 gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
          Length = 629

 Score =  503 bits (1296), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 280/667 (41%), Positives = 392/667 (58%), Gaps = 74/667 (11%)

Query: 33  THKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNL 92
           T +  +Q+HA  +KT  I+H   ++ LL          + YAR  F +I  HP+   +N 
Sbjct: 27  TTRHLKQIHAHFIKTGQIHHPLAAAELLKFLTLSTQREIKYARKFFSQI-HHPNCFSWNT 85

Query: 93  LIKCY-------VFNQRSHEALTLFCDLL-DRFLLPDNFTLPCVIKGAARLGAIKEGKQI 144
           +I+         +F+  S EAL  F  +L D  + P+ FT PCV+K              
Sbjct: 86  IIRALADSDDDDLFHVNSLEALLYFSHMLTDGLVEPNKFTFPCVLKAC------------ 133

Query: 145 HGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEV 204
                                  AK   I+ G+++   +    LVS              
Sbjct: 134 -----------------------AKLARIEEGKQLHGFVVKLGLVS-------------- 156

Query: 205 EVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMP-NRNLVSWNAMINGYMKA 263
                        D F  + LV  +  CG ++ A  +FY+     N+V WN MI+GY++ 
Sbjct: 157 -------------DEFVRSNLVRVYVMCGAMKDAHVLFYQTRLEGNVVLWNVMIDGYVRM 203

Query: 264 GDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSAL 323
           GD+ ++ ELFD M  + +++WN MI+G   NG F EA+E+   M +GDV PN  TLVS L
Sbjct: 204 GDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQLGDVPPNYVTLVSVL 263

Query: 324 SAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAI-SKKKV 382
            AV+ L  +  G+W+H +  KN   +D VLG+ LI MYSKCGSI+ A+ VF  I +KK  
Sbjct: 264 PAVSRLGAIELGKWVHLFAEKNEIEIDDVLGSALIDMYSKCGSIDKAVQVFEGIRNKKNP 323

Query: 383 GHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNM 442
             W+A+I GL MHG A  ALD F +M + G+ P+ + +IGVL+ACSHAGLV +GR  +  
Sbjct: 324 ITWSAIIGGLAMHGRARDALDHFWRMQQAGVTPSDVVYIGVLSACSHAGLVEEGRSIYYH 383

Query: 443 MINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKD 502
           M+N  G+ P IEHYGC+VD+L R G LEEA+  I +MP++P+ VI  +LL   + HGN +
Sbjct: 384 MVNIVGLLPRIEHYGCMVDLLGRAGCLEEAEQLILNMPVKPDDVILKALLGACKMHGNIE 443

Query: 503 IGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHR 562
           +GE  A  L+   P   G YV LSN++A+ G W+ V +VR  MK+   RKDPG S IE  
Sbjct: 444 MGERIAKILMGWYPHDSGSYVALSNMFASEGNWEGVVKVRLKMKELDIRKDPGCSWIELD 503

Query: 563 GVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHS 622
           GV+HEF+V D SHP+ + IHS L EM ++L++ G+ P+TTQVLL + D+KEK++ L  HS
Sbjct: 504 GVIHEFLVEDDSHPRAEGIHSMLEEMSDRLRSVGYRPNTTQVLLNM-DEKEKQSALHYHS 562

Query: 623 ERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGS 682
           E++AIAFGLI+ + ++P++IVKNLRVC DCHS  KL+S IYNR+IIVRD  RFHHF+NGS
Sbjct: 563 EKIAIAFGLISTRPQTPLQIVKNLRVCEDCHSSIKLVSKIYNRKIIVRDRKRFHHFENGS 622

Query: 683 CSCKDFW 689
           CSC D+W
Sbjct: 623 CSCMDYW 629


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  503 bits (1295), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 253/616 (41%), Positives = 374/616 (60%), Gaps = 10/616 (1%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           AR +FDR+ +    V +N L+  YV N +  EA  LF    +  L+  N    C++ G  
Sbjct: 171 ARRVFDRMPEKND-VSWNALLSAYVQNSKLEEACVLFGSRENWALVSWN----CLLGGFV 225

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
           +   I E +Q     F      D    +++++ YA+ GEID  R++FD     D+ +W  
Sbjct: 226 KKKKIVEARQF----FDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTA 281

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSW 253
           ++ GY++   VE A +LFD MP+R+  SW  ++ G+ +  +VE+A+E+F  MP RN+ +W
Sbjct: 282 MVSGYIQNRMVEEARELFDRMPERNEVSWNAMLAGYVQGERVEMAKELFDVMPCRNVSTW 341

Query: 254 NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL 313
           N MI GY + G +  A  LFD M  RD ++W +MIAGY  +G   EAL L   M      
Sbjct: 342 NTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGR 401

Query: 314 PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTV 373
            N ++  SALS  A +  L  G+ +H  +VK G+     +G  L+ MY KCGSIE A  +
Sbjct: 402 LNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDL 461

Query: 374 FRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLV 433
           F+ ++ K +  W  MI G   HG   +AL  F  M R G+KP   T + VL+ACSH GLV
Sbjct: 462 FKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLV 521

Query: 434 NDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLS 493
           + GR+YF+ M  DYG+ P  +HY C+VD+L R G LEEA + +++MP  P+  IW +LL 
Sbjct: 522 DKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLG 581

Query: 494 GARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKD 553
            +R HGN ++ E AA+ +  + P+  G YV+LSN+YA++G+W  V ++R  M+ +G +K 
Sbjct: 582 ASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKV 641

Query: 554 PGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKE 613
           PG S IE +   H F VGD+ HP+ DEI + L ++  ++K AG+V  T+ VL  +E++ E
Sbjct: 642 PGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEDLDLRMKKAGYVSKTSVVLHDVEEE-E 700

Query: 614 KEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNS 673
           KE  +  HSERLA+A+G++ V S  PIR++KNLRVC DCH+  K ++ +  R II+RDN+
Sbjct: 701 KERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMAKVTGRLIILRDNN 760

Query: 674 RFHHFKNGSCSCKDFW 689
           RFHHFK+GSCSC D+W
Sbjct: 761 RFHHFKDGSCSCGDYW 776



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 111/410 (27%), Positives = 191/410 (46%), Gaps = 64/410 (15%)

Query: 148 VFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVA 207
           VFK    +     ++++S Y + GE +L R +FD M ++DLVSWN +I GYV+   +  A
Sbjct: 81  VFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDEMPERDLVSWNVMIKGYVRNRNLGKA 140

Query: 208 MKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVD 267
            +LF+ MP+RD+ SW  ++ G+++ G V+ AR +F RMP +N VSWNA+++ Y++   ++
Sbjct: 141 RELFERMPERDVCSWNTILSGYAQNGCVDDARRVFDRMPEKNDVSWNALLSAYVQNSKLE 200

Query: 268 SAC-------------------------------ELFDDMEIRDLITWNSMIAGYELNGR 296
            AC                               + FD M++RD+++WN++I GY  NG 
Sbjct: 201 EACVLFGSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGE 260

Query: 297 FMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWM------HSYIVKNGFVVD 350
             EA +L +   + DV     T  + +S      ++ + R +       + +  N  +  
Sbjct: 261 IDEARQLFDESPVHDVF----TWTAMVSGYIQNRMVEEARELFDRMPERNEVSWNAMLAG 316

Query: 351 GVLG---------------------TLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMI 389
            V G                       +I  Y++CG I  A  +F  + K+    W AMI
Sbjct: 317 YVQGERVEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMI 376

Query: 390 VGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGI 449
            G    G + +AL LF  M R G +    +F   L+ C+    +  G++    ++   G 
Sbjct: 377 AGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKG-GY 435

Query: 450 EPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
           E        L+ + C+ G +EEA    + M  + + V W ++++G   HG
Sbjct: 436 ETGCFVGNALLLMYCKCGSIEEANDLFKEMAGK-DIVSWNTMIAGYSRHG 484



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 97/342 (28%), Positives = 167/342 (48%), Gaps = 30/342 (8%)

Query: 164 VSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWT 223
           +S Y + G      RVF  M     VS+N +I GY++ GE E+A  LFDEMP+RDL SW 
Sbjct: 66  ISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDEMPERDLVSWN 125

Query: 224 CLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLIT 283
            ++ G+ +   +  ARE+F RMP R++ SWN +++GY + G VD A  +FD M  ++ ++
Sbjct: 126 VMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYAQNGCVDDARRVFDRMPEKNDVS 185

Query: 284 WNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLA----VLNKGRWMH 339
           WN++++ Y  N +  EA  L  +         +  LVS    + G      ++   ++  
Sbjct: 186 WNALLSAYVQNSKLEEACVLFGSR-------ENWALVSWNCLLGGFVKKKKIVEARQFFD 238

Query: 340 SYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMAT 399
           S  V+     D V    +I  Y++ G I+ A  +F       V  WTAM+ G   + M  
Sbjct: 239 SMKVR-----DVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMVE 293

Query: 400 QALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP--TIEHYG 457
           +A +LF++M     +   +++  +L        V   +  F++M       P   +  + 
Sbjct: 294 EARELFDRMP----ERNEVSWNAMLAGYVQGERVEMAKELFDVM-------PCRNVSTWN 342

Query: 458 CLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
            ++    + G + EAK+  + MP R + V W ++++G    G
Sbjct: 343 TMITGYAQCGKISEAKNLFDKMPKR-DPVSWAAMIAGYSQSG 383


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  503 bits (1294), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 265/630 (42%), Positives = 393/630 (62%), Gaps = 10/630 (1%)

Query: 68  INNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPC 127
            ++ +Y R +F +I Q P++ L+N +I+  V N    +A+  +  +     LP+NFT P 
Sbjct: 59  FSDTNYTRFLFHQIKQ-PNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPF 117

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD 187
           V+K  ARL  ++ G +IH LV K GF  D FV +SLV +YAK G ++   +VFD + DK+
Sbjct: 118 VLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKN 177

Query: 188 LVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVE----IAR 239
           +VSW  +I GY+  G+   A+ +F  + + +L    F+   ++   ++ G +     I +
Sbjct: 178 VVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHK 237

Query: 240 EIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFME 299
            I      RN+    ++++ Y K G+++ A  +FD M  +D+++W +MI GY LNG   E
Sbjct: 238 CIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKE 297

Query: 300 ALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQ 359
           A++L   M   +V P+  T+V  LSA A L  L  G W+   + +N F+ + VLGT LI 
Sbjct: 298 AIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLGTALID 357

Query: 360 MYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAIT 419
           +Y+KCGS+  A  VF+ + +K    W A+I GL M+G    +  LF ++ ++G+KP   T
Sbjct: 358 LYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNT 417

Query: 420 FIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM 479
           FIG+L  C+HAGLV++GRRYFN M   + + P+IEHYGC+VD+L R G L+EA   I +M
Sbjct: 418 FIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNM 477

Query: 480 PMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVS 539
           PM  N ++W +LL   R H +  + E A   LI++ P   G YV+LSNIY+A  +WD+ +
Sbjct: 478 PMEANAIVWGALLGACRIHRDTQLAELALKQLIELEPWNSGNYVLLSNIYSANLKWDEAA 537

Query: 540 EVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVP 599
           +VR  M ++  +K PG S IE  G++HEF+VGDK HP +++I++KL E+  K+K AG+VP
Sbjct: 538 KVRLSMNEKRIQKPPGCSWIEVDGIVHEFLVGDKYHPLSEKIYAKLDELTKKMKVAGYVP 597

Query: 600 DTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLL 659
            T  VL  IE++ EKE  L  HSE+LAIAFGLI+    + IR+VKNLRVC DCH   KL+
Sbjct: 598 TTDFVLFDIEEE-EKEHFLGCHSEKLAIAFGLISATPTAVIRVVKNLRVCGDCHMAIKLI 656

Query: 660 SGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           S I  REI VRDN+RFH F+ GSCSC D+W
Sbjct: 657 SSITGREITVRDNNRFHCFREGSCSCNDYW 686


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 253/616 (41%), Positives = 375/616 (60%), Gaps = 10/616 (1%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           ARS+FDR+ +    V +N L+  YV N +  EA  LF    +  L+  N    C++ G  
Sbjct: 176 ARSVFDRMPEKND-VSWNALLSAYVQNSKMEEACMLFKSRENWALVSWN----CLLGGFV 230

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
           +   I E +Q     F      D    +++++ YA+ G+ID  R++FD    +D+ +W  
Sbjct: 231 KKKKIVEARQF----FDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTA 286

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSW 253
           ++ GY++   VE A +LFD+MP+R+  SW  ++ G+ +  ++E+A+E+F  MP RN+ +W
Sbjct: 287 MVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTW 346

Query: 254 NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL 313
           N MI GY + G +  A  LFD M  RD ++W +MIAGY  +G   EAL L   M      
Sbjct: 347 NTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGR 406

Query: 314 PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTV 373
            N ++  SALS  A +  L  G+ +H  +VK G+     +G  L+ MY KCGSIE A  +
Sbjct: 407 LNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDL 466

Query: 374 FRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLV 433
           F+ ++ K +  W  MI G   HG    AL  F  M R G+KP   T + VL+ACSH GLV
Sbjct: 467 FKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLV 526

Query: 434 NDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLS 493
           + GR+YF  M  DYG+ P  +HY C+VD+L R G LE+A + +++MP  P+  IW +LL 
Sbjct: 527 DKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLG 586

Query: 494 GARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKD 553
            +R HGN ++ E AA+ +  + P+  G YV+LSN+YA++G+W  V ++R  M+ +G +K 
Sbjct: 587 ASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKV 646

Query: 554 PGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKE 613
           PG S IE +   H F VGD+ HP+ DEI + L E+  ++K AG+V  T+ VL  +E++ E
Sbjct: 647 PGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEE-E 705

Query: 614 KEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNS 673
           KE  +  HSERLA+A+G++ V S  PIR++KNLRVC DCH+  K ++ I  R II+RDN+
Sbjct: 706 KERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNN 765

Query: 674 RFHHFKNGSCSCKDFW 689
           RFHHFK+GSCSC D+W
Sbjct: 766 RFHHFKDGSCSCGDYW 781



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 119/437 (27%), Positives = 204/437 (46%), Gaps = 62/437 (14%)

Query: 148 VFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVA 207
           VFK    +     + ++S Y + GE +L R++FD M ++DLVSWN +I GYV+   +  A
Sbjct: 86  VFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKA 145

Query: 208 MKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVD 267
            +LF+ MP+RD+ SW  ++ G+++ G V+ AR +F RMP +N VSWNA+++ Y++   ++
Sbjct: 146 RELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKME 205

Query: 268 SAC-------------------------------ELFDDMEIRDLITWNSMIAGYELNGR 296
            AC                               + FD M +RD+++WN++I GY  +G+
Sbjct: 206 EACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGK 265

Query: 297 FMEALELLETMLIGDVLPNDATLV---------------------SALSAVAGLAVLNKG 335
             EA +L +   + DV    A +                      + +S  A LA   +G
Sbjct: 266 IDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQG 325

Query: 336 RWMHSYIVKNGFVV----DGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVG 391
             M   + K  F V    +      +I  Y++CG I  A  +F  + K+    W AMI G
Sbjct: 326 ERME--MAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAG 383

Query: 392 LGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP 451
               G + +AL LF +M R G +    +F   L+ C+    +  G++    ++   G E 
Sbjct: 384 YSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKG-GYET 442

Query: 452 TIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNL 511
                  L+ + C+ G +EEA    + M  + + V W ++++G   HG  ++      ++
Sbjct: 443 GCFVGNALLLMYCKCGSIEEANDLFKEMAGK-DIVSWNTMIAGYSRHGFGEVALRFFESM 501

Query: 512 IK--VAPDTIGCYVVLS 526
            +  + PD      VLS
Sbjct: 502 KREGLKPDDATMVAVLS 518



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 100/340 (29%), Positives = 169/340 (49%), Gaps = 26/340 (7%)

Query: 164 VSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWT 223
           +S Y + G  +   RVF  M     VS+N +I GY++ GE E+A KLFDEMP+RDL SW 
Sbjct: 71  ISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDLVSWN 130

Query: 224 CLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLIT 283
            ++ G+ +   +  ARE+F  MP R++ SWN M++GY + G VD A  +FD M  ++ ++
Sbjct: 131 VMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVS 190

Query: 284 WNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLA----VLNKGRWMH 339
           WN++++ Y  N +  EA  L ++         +  LVS    + G      ++   ++  
Sbjct: 191 WNALLSAYVQNSKMEEACMLFKSR-------ENWALVSWNCLLGGFVKKKKIVEARQFFD 243

Query: 340 SYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMAT 399
           S  V+     D V    +I  Y++ G I+ A  +F     + V  WTAM+ G   + M  
Sbjct: 244 SMNVR-----DVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVE 298

Query: 400 QALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCL 459
           +A +LF+KM     +   +++  +L     AG V   R      + D      +  +  +
Sbjct: 299 EARELFDKM----PERNEVSWNAML-----AGYVQGERMEMAKELFDVMPCRNVSTWNTM 349

Query: 460 VDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
           +    + G + EAK+  + MP R + V W ++++G    G
Sbjct: 350 ITGYAQCGKISEAKNLFDKMPKR-DPVSWAAMIAGYSQSG 388


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 251/616 (40%), Positives = 381/616 (61%), Gaps = 11/616 (1%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           AR IFD++L     + +N L+  YV N R  +A  LF   +D  ++  N    C++ G  
Sbjct: 172 ARKIFDQMLVKNE-ISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWN----CLMGGYV 226

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
           R   + + + +    F      DK   + +++ YA+ G +   RR+F+ +  +D+ +W  
Sbjct: 227 RKKRLDDARSL----FDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTA 282

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSW 253
           ++ G+V+ G ++ A ++F+EMP+++  SW  ++ G+ +  ++E ARE+F +MP+RN  SW
Sbjct: 283 MVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSW 342

Query: 254 NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL 313
           N M+ GY + G++D A  LFD+M  RD I+W +MI+GY  +G+  EAL L   M     +
Sbjct: 343 NTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGI 402

Query: 314 PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTV 373
            N + L  ALS+ A +A L  G+ +H  +VK GF    + G  L+ MY KCGSIE A  V
Sbjct: 403 LNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDV 462

Query: 374 FRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLV 433
           F  I++K +  W  MI G   HG   +AL LF  M +M +KP  +T +GVL+ACSH GLV
Sbjct: 463 FEDITEKDIVSWNTMIAGYARHGFGKEALALFESM-KMTIKPDDVTLVGVLSACSHTGLV 521

Query: 434 NDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLS 493
           + G  YFN M  +YGI    +HY C++D+L R G L+EA + ++SMP  P+   W +LL 
Sbjct: 522 DKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLG 581

Query: 494 GARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKD 553
            +R HG+ ++GE AA  + ++ PD  G YV+LSN+YAA+G+W +V E+R  M+ +G +K 
Sbjct: 582 ASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKV 641

Query: 554 PGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKE 613
           PG S +E +   H F VGD SHP+ + I++ L E+  +LK  G V  T  VL  +E++ E
Sbjct: 642 PGYSWVEIQNKTHIFTVGDCSHPEAERIYAYLEELDLELKKDGFVSSTKLVLHDVEEE-E 700

Query: 614 KEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNS 673
           KE  L+ HSE+LA+AFG++++    PIR++KNLRVC DCH+  K +S I  R+IIVRD++
Sbjct: 701 KEHMLKYHSEKLAVAFGILSIPPGRPIRVIKNLRVCEDCHNAIKHISKITQRQIIVRDSN 760

Query: 674 RFHHFKNGSCSCKDFW 689
           RFHHF  GSCSC D+W
Sbjct: 761 RFHHFSEGSCSCGDYW 776



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 115/421 (27%), Positives = 190/421 (45%), Gaps = 57/421 (13%)

Query: 161 SSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLF 220
           ++++S Y    + D  R+VF+ M D+DL+SWN ++ GYVK G +  A  LF++MP++D+ 
Sbjct: 95  NAMISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVV 154

Query: 221 SWTCLVDGFSKCGKVEIAREIFYRMPNRN------------------------------- 249
           SW  ++ GF++ G VE AR+IF +M  +N                               
Sbjct: 155 SWNAMLSGFAQNGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWE 214

Query: 250 LVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLI 309
           +VSWN ++ GY++   +D A  LFD M +RD I+WN MI GY  NG   EA  L E + I
Sbjct: 215 IVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPI 274

Query: 310 GDVLP---------NDATLVSALSAVAGLAVLNKGRW--------MHSYIVKNGFVVDGV 352
            DV            +  L  A      +   N+  W            I K   + D +
Sbjct: 275 RDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQM 334

Query: 353 LG------TLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFN 406
                     ++  Y++CG+I+ A  +F  + ++    W AMI G    G + +AL LF 
Sbjct: 335 PSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFI 394

Query: 407 KMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRT 466
           KM R G           L++C+    +  G++    ++   G +        L+ +  + 
Sbjct: 395 KMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVK-AGFQTGYIAGNALLAMYGKC 453

Query: 467 GYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG-NKDIGEYAANNLIKVAPDTIGCYVVL 525
           G +EEA    E +  + + V W ++++G   HG  K+      +  + + PD +    VL
Sbjct: 454 GSIEEAFDVFEDITEK-DIVSWNTMIAGYARHGFGKEALALFESMKMTIKPDDVTLVGVL 512

Query: 526 S 526
           S
Sbjct: 513 S 513



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 174/342 (50%), Gaps = 24/342 (7%)

Query: 164 VSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWT 223
           +S Y + G+ +    VF+ M  +  V++N +I GY+   + + A K+F++MPDRDL SW 
Sbjct: 67  ISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKMPDRDLISWN 126

Query: 224 CLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLIT 283
            ++ G+ K G +  AR +F +MP +++VSWNAM++G+ + G V+ A ++FD M +++ I+
Sbjct: 127 VMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNEIS 186

Query: 284 WNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLA---VLNKGRWMHS 340
           WN +++ Y  NGR  +A  L ++ +       D  +VS    + G      L+  R +  
Sbjct: 187 WNGLLSAYVQNGRIEDARRLFDSKM-------DWEIVSWNCLMGGYVRKKRLDDARSLFD 239

Query: 341 YIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQ 400
            +     V D +   ++I  Y++ G +  A  +F  +  + V  WTAM+ G   +GM  +
Sbjct: 240 RMP----VRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDE 295

Query: 401 ALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLV 460
           A  +F +M     +   +++  ++     +  +   R  F+ M +          +  +V
Sbjct: 296 ATRIFEEMP----EKNEVSWNAMIAGYVQSQQIEKARELFDQMPS-----RNTSSWNTMV 346

Query: 461 DILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKD 502
               + G +++AK   + MP R + + W +++SG    G  +
Sbjct: 347 TGYAQCGNIDQAKILFDEMPQR-DCISWAAMISGYAQSGQSE 387


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 272/710 (38%), Positives = 415/710 (58%), Gaps = 54/710 (7%)

Query: 25  WNILKFSSTHKETQQLHA------LSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIF 78
           ++ L  +++    +Q+HA      L   T+L+    ISS  LS       ++L YA S+F
Sbjct: 27  FSALSSATSLTHLKQVHAQILRSKLDRSTSLLVKLVISSCALS-------SSLDYALSVF 79

Query: 79  DRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAI 138
           + ++  P   L N  ++    ++   + L ++  +  + L  D F+ P ++K  +R+ ++
Sbjct: 80  N-LIPKPETHLCNRFLRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSL 138

Query: 139 KEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGY 198
            EG +IHGL  KLGF  D FV + LV MYA  G I   R +FD M  +D+V+W+ +IDGY
Sbjct: 139 VEGLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGY 198

Query: 199 VKKGEVEVAMKLFDEM------PDRDLFS------------------------------- 221
            + G    A+ LF+EM      PD  + S                               
Sbjct: 199 CQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDP 258

Query: 222 --WTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIR 279
              + LV  ++ CG +++A  +F +M  +NLV+  AM+ GY K G +++A  +F+ M  +
Sbjct: 259 HLQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKK 318

Query: 280 DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMH 339
           DL+ W++MI+GY  +    EAL L   M    + P+  T++S ++A A L  L++ +W+H
Sbjct: 319 DLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIH 378

Query: 340 SYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMAT 399
            ++ KNGF     +   LI+MY+KCGS+E A  +F  + +K V  WT MI    MHG A 
Sbjct: 379 LFVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGDAG 438

Query: 400 QALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCL 459
            AL  F++M    ++P  ITF+GVL ACSHAGLV +GR+ F  MIN++ I P   HYGC+
Sbjct: 439 SALRFFHQMEDENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYGCM 498

Query: 460 VDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTI 519
           VD+  R   L EA   +E+MP+ PN +IW SL++  R HG  ++GE+AA  L+++ PD  
Sbjct: 499 VDLFGRANLLREALELVEAMPLAPNVIIWGSLMAACRVHGEIELGEFAAKRLLELDPDHD 558

Query: 520 GCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTD 579
           G +V LSNIYA A +W+ V +VR++MK +G  K+ G S  E    +HEF+V D+SH   D
Sbjct: 559 GAHVFLSNIYAKARRWEDVGQVRKLMKHKGISKERGCSRFELNNEIHEFLVADRSHKHAD 618

Query: 580 EIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSP 639
           EI+ KL E+ +KLK  G+ P+T  +L+   +++EK+  +  HSE+LA+ +GL+   + S 
Sbjct: 619 EIYEKLYEVVSKLKLVGYSPNTCSILV-DLEEEEKKEVVLWHSEKLALCYGLMRDGTGSC 677

Query: 640 IRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           IRI+KNLRVC DCH+  KL S +Y REI+VRD +RFHH+K+G CSCKD+W
Sbjct: 678 IRIIKNLRVCEDCHTFIKLASKVYEREIVVRDRTRFHHYKDGVCSCKDYW 727


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  500 bits (1287), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 274/675 (40%), Positives = 410/675 (60%), Gaps = 18/675 (2%)

Query: 28  LKFSSTHKETQQLHA-LSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPS 86
           L  S +  +  QLHA ++    L  ++ ++++L + Y      ++ YA+ IFD+I+   S
Sbjct: 32  LTNSKSLTQALQLHAHVTTGGTLRRNTYLATKLAACYA--VCGHMPYAQHIFDQIVLKNS 89

Query: 87  LVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHG 146
             L+N +I+ Y  N     AL L+  +L     PDNFT P V+K    L   + G+++H 
Sbjct: 90  F-LWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKACGDLLLREMGRKVHA 148

Query: 147 LVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEV 206
           LV   G   D +V +S++SMY KFG+++  R VFD M  +DL SWN ++ G+VK GE   
Sbjct: 149 LVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMMSGFVKNGEARG 208

Query: 207 AMKLFDEMPDRDLF--SWTCLVDGFSKCGKV---EIAREIF-YRMPNR------NLVSWN 254
           A ++F +M  RD F    T L+   S CG V   ++ +EI  Y + N       N    N
Sbjct: 209 AFEVFGDM-RRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRNGESGRVCNGFLMN 267

Query: 255 AMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLP 314
           ++I+ Y     V  A +LF+ + ++D+++WNS+I+GYE  G   +ALEL   M++   +P
Sbjct: 268 SIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCGDAFQALELFGRMVVVGAVP 327

Query: 315 NDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVF 374
           ++ T++S L+A   ++ L  G  + SY+VK G+VV+ V+GT LI MY+ CGS+  A  VF
Sbjct: 328 DEVTVISVLAACNQISALRLGATVQSYVVKRGYVVNVVVGTALIGMYANCGSLVCACRVF 387

Query: 375 RAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVN 434
             + +K +   T M+ G G+HG   +A+ +F +M   G+ P    F  VL+ACSH+GLV+
Sbjct: 388 DEMPEKNLPACTVMVTGFGIHGRGREAISIFYEMLGKGVTPDEGIFTAVLSACSHSGLVD 447

Query: 435 DGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG 494
           +G+  F  M  DY +EP   HY CLVD+L R GYL+EA + IE+M ++PN  +W +LLS 
Sbjct: 448 EGKEIFYKMTRDYSVEPRPTHYSCLVDLLGRAGYLDEAYAVIENMKLKPNEDVWTALLSA 507

Query: 495 ARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDP 554
            R H N  +   +A  L ++ PD +  YV LSNIYAA  +W+ V  VR ++ KR  RK P
Sbjct: 508 CRLHRNVKLAVISAQKLFELNPDGVSGYVCLSNIYAAERRWEDVENVRALVAKRRLRKPP 567

Query: 555 GSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEK 614
             S +E   ++H+F VGD SH Q+D+I++KL ++  +LK AG+ PDT+ VL  +E++  K
Sbjct: 568 SYSFVELNKMVHQFFVGDTSHEQSDDIYAKLKDLNEQLKKAGYKPDTSLVLYDVEEEI-K 626

Query: 615 EAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSR 674
           E  L +HSERLA+AF LIN    + IRI KNLRVC DCH+V K++S + NREII+RD  R
Sbjct: 627 EKMLWDHSERLALAFALINTGPGTTIRITKNLRVCGDCHTVIKMISKLTNREIIMRDICR 686

Query: 675 FHHFKNGSCSCKDFW 689
           FHHF++G CSC  +W
Sbjct: 687 FHHFRDGLCSCGGYW 701


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  499 bits (1285), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 265/664 (39%), Positives = 402/664 (60%), Gaps = 18/664 (2%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +++H   +K  L     + + L+ +Y +     + YAR +FD++++   +V ++ +I+  
Sbjct: 114 KEIHGFVLKKGLDRDVFVGNALMLMYGECAC--VEYARLVFDKMMER-DVVSWSTMIRSL 170

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
             N+    AL L  ++    + P    +  ++   A    ++ GK +H  V +       
Sbjct: 171 SRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHM 230

Query: 158 FV--LSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP 215
            V   ++L+ MYAK G + L R++F+ +  K +VSW  +I G ++   +E   KLF  M 
Sbjct: 231 GVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQ 290

Query: 216 DRDLFS-----WTCLVD-GFSKCGKVEIAREIF-YRMPNRNLVSW---NAMINGYMKAGD 265
           + ++F       + +V+ GF+  G +++ +++  Y + N   VS     A+++ Y K  D
Sbjct: 291 EENIFPNEITMLSLIVECGFT--GALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSD 348

Query: 266 VDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSA 325
           + +A  LFD  + RD++ W +M++ Y       +A  L + M    V P   T+VS LS 
Sbjct: 349 IRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSL 408

Query: 326 VAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHW 385
            A    L+ G+W+HSYI K    VD +L T L+ MY+KCG I +A  +F     + +  W
Sbjct: 409 CAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMW 468

Query: 386 TAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN 445
            A+I G  MHG   +ALD+F +M R G+KP  ITFIG+L+ACSHAGLV +G++ F  M++
Sbjct: 469 NAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVH 528

Query: 446 DYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGE 505
            +G+ P IEHYGC+VD+L R G L+EA   I+SMP++PN ++W +L++  R H N  +GE
Sbjct: 529 TFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGE 588

Query: 506 YAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVL 565
            AA  L+++ P+  G  V++SNIYAAA +W   + VR+ MK  G +K+PG S IE  G +
Sbjct: 589 LAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTV 648

Query: 566 HEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERL 625
           HEF++GD+SHPQ   I+  L+EMR KL  AG+VPDT+ VLL I D++EKE  L  HSE+L
Sbjct: 649 HEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLNI-DEEEKETALTYHSEKL 707

Query: 626 AIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSC 685
           A+AFGLI+    +PIRIVKNLRVCNDCH+ TKLLS IY R IIVRD +RFHHF+ G CSC
Sbjct: 708 AMAFGLISTAPSTPIRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSC 767

Query: 686 KDFW 689
            D+W
Sbjct: 768 GDYW 771



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 110/389 (28%), Positives = 203/389 (52%), Gaps = 14/389 (3%)

Query: 122 NFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFD 181
           NF  P V+K   ++   + GK+IHG V K G   D FV ++L+ MY +   ++  R VFD
Sbjct: 94  NFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFD 153

Query: 182 AMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEI 237
            M ++D+VSW+ +I    +  E ++A++L  EM    +     +   +V+ F+    + +
Sbjct: 154 KMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRM 213

Query: 238 AREIF-YRMPNRN-----LVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGY 291
            + +  Y + N N     + +  A+++ Y K G +  A +LF+ +  + +++W +MIAG 
Sbjct: 214 GKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGC 273

Query: 292 ELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDG 351
             + R  E  +L   M   ++ PN+ T++S +        L  G+ +H+YI++NGF V  
Sbjct: 274 IRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSL 333

Query: 352 VLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRM 411
            L T L+ MY KC  I +A  +F +   + V  WTAM+          QA +LF++M   
Sbjct: 334 ALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTS 393

Query: 412 GMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEE 471
           G++PT +T + +L+ C+ AG ++ G ++ +  I+   +E        LVD+  + G +  
Sbjct: 394 GVRPTKVTIVSLLSLCAVAGALDLG-KWVHSYIDKERVEVDCILNTALVDMYAKCGDINA 452

Query: 472 A-KSTIESMPMRPNFVIWMSLLSGARNHG 499
           A +  IE++    +  +W ++++G   HG
Sbjct: 453 AGRLFIEAISR--DICMWNAIITGFAMHG 479



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 91/432 (21%), Positives = 179/432 (41%), Gaps = 80/432 (18%)

Query: 26  NILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHP 85
           N+   ++  +  + +HA  ++ +   H G+ +    L +     +L  AR +F+ + Q  
Sbjct: 203 NLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQ-K 261

Query: 86  SLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIH 145
           ++V +  +I   + + R  E   LF  + +  + P+  T+  +I      GA++ GKQ+H
Sbjct: 262 TVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLH 321

Query: 146 GLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVE 205
             + + GF     + ++LV MY K  +I   R +FD+  ++D++ W  ++  Y +   ++
Sbjct: 322 AYILRNGFSVSLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCID 381

Query: 206 VAMKLFDEM------PDR----------------DLFSW-----------------TCLV 226
            A  LFD+M      P +                DL  W                 T LV
Sbjct: 382 QAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALV 441

Query: 227 DGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNS 286
           D ++KCG +  A  +F    +R++  WNA+I G+   G  + A ++F +ME +       
Sbjct: 442 DMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQ------- 494

Query: 287 MIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKN- 345
                                    V PND T +  L A +   ++ +G+ +   +V   
Sbjct: 495 ------------------------GVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTF 530

Query: 346 GFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS-KKKVGHWTAMIVGLGMHG-------M 397
           G V        ++ +  + G ++ A  + +++  K     W A++    +H         
Sbjct: 531 GLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELA 590

Query: 398 ATQALDLFNKMC 409
           ATQ L++  + C
Sbjct: 591 ATQLLEIEPENC 602


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  499 bits (1285), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 250/616 (40%), Positives = 380/616 (61%), Gaps = 11/616 (1%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           AR IFD++L     + +N L+  YV N R  +A  LF   +D  ++  N    C++ G  
Sbjct: 172 ARKIFDQMLVKNE-ISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWN----CLMGGYV 226

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
           R   + + + +    F      DK   + +++ YA+ G +   RR+F+ +  +D+ +W  
Sbjct: 227 RKKRLDDARSL----FDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTA 282

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSW 253
           ++ G+V+ G ++ A ++F+EMP+++  SW  ++ G+ +  ++E ARE+F +MP+RN  SW
Sbjct: 283 MVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSW 342

Query: 254 NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL 313
           N M+ GY + G++D A  LFD+M  RD I+W +MI+GY  +G+  EAL L   M     +
Sbjct: 343 NTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGI 402

Query: 314 PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTV 373
            N + L  ALS+ A +A L  G+ +H  +VK GF    + G  L+ MY KCGSIE A  V
Sbjct: 403 LNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDV 462

Query: 374 FRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLV 433
           F  I++K +  W  MI G   HG   +AL LF  M +M +KP  +T +GVL+ACSH G V
Sbjct: 463 FEDITEKDIVSWNTMIAGYARHGFGKEALALFESM-KMTIKPDDVTLVGVLSACSHTGFV 521

Query: 434 NDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLS 493
           + G  YFN M  +YGI    +HY C++D+L R G L+EA + ++SMP  P+   W +LL 
Sbjct: 522 DKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLG 581

Query: 494 GARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKD 553
            +R HG+ ++GE AA  + ++ PD  G YV+LSN+YAA+G+W +V E+R  M+ +G +K 
Sbjct: 582 ASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKV 641

Query: 554 PGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKE 613
           PG S +E +   H F VGD SHP+ + I++ L E+  +LK  G V  T  VL  +E++ E
Sbjct: 642 PGYSWVEIQNKTHIFTVGDCSHPEAERIYAYLEELDLELKKDGFVSSTKLVLHDVEEE-E 700

Query: 614 KEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNS 673
           KE  L+ HSE+LA+AFG++++    PIR++KNLRVC DCH+  K +S I  R+IIVRD++
Sbjct: 701 KEHMLKYHSEKLAVAFGILSIPPGRPIRVIKNLRVCEDCHNAIKHISKITQRQIIVRDSN 760

Query: 674 RFHHFKNGSCSCKDFW 689
           RFHHF  GSCSC D+W
Sbjct: 761 RFHHFSEGSCSCGDYW 776



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 115/421 (27%), Positives = 190/421 (45%), Gaps = 57/421 (13%)

Query: 161 SSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLF 220
           ++++S Y    + D  R+VF+ M D+DL+SWN ++ GYVK G +  A  LF++MP++D+ 
Sbjct: 95  NAMISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVV 154

Query: 221 SWTCLVDGFSKCGKVEIAREIFYRMPNRN------------------------------- 249
           SW  ++ GF++ G VE AR+IF +M  +N                               
Sbjct: 155 SWNAMLSGFAQNGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWE 214

Query: 250 LVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLI 309
           +VSWN ++ GY++   +D A  LFD M +RD I+WN MI GY  NG   EA  L E + I
Sbjct: 215 IVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPI 274

Query: 310 GDVLP---------NDATLVSALSAVAGLAVLNKGRW--------MHSYIVKNGFVVDGV 352
            DV            +  L  A      +   N+  W            I K   + D +
Sbjct: 275 RDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQM 334

Query: 353 LG------TLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFN 406
                     ++  Y++CG+I+ A  +F  + ++    W AMI G    G + +AL LF 
Sbjct: 335 PSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFI 394

Query: 407 KMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRT 466
           KM R G           L++C+    +  G++    ++   G +        L+ +  + 
Sbjct: 395 KMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVK-AGFQTGYIAGNALLAMYGKC 453

Query: 467 GYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG-NKDIGEYAANNLIKVAPDTIGCYVVL 525
           G +EEA    E +  + + V W ++++G   HG  K+      +  + + PD +    VL
Sbjct: 454 GSIEEAFDVFEDITEK-DIVSWNTMIAGYARHGFGKEALALFESMKMTIKPDDVTLVGVL 512

Query: 526 S 526
           S
Sbjct: 513 S 513



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 174/342 (50%), Gaps = 24/342 (7%)

Query: 164 VSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWT 223
           +S Y + G+ +    VF+ M  +  V++N +I GY+   + + A K+F++MPDRDL SW 
Sbjct: 67  ISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKMPDRDLISWN 126

Query: 224 CLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLIT 283
            ++ G+ K G +  AR +F +MP +++VSWNAM++G+ + G V+ A ++FD M +++ I+
Sbjct: 127 VMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNEIS 186

Query: 284 WNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLA---VLNKGRWMHS 340
           WN +++ Y  NGR  +A  L ++ +       D  +VS    + G      L+  R +  
Sbjct: 187 WNGLLSAYVQNGRIEDARRLFDSKM-------DWEIVSWNCLMGGYVRKKRLDDARSLFD 239

Query: 341 YIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQ 400
            +     V D +   ++I  Y++ G +  A  +F  +  + V  WTAM+ G   +GM  +
Sbjct: 240 RMP----VRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDE 295

Query: 401 ALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLV 460
           A  +F +M     +   +++  ++     +  +   R  F+ M +          +  +V
Sbjct: 296 ATRIFEEMP----EKNEVSWNAMIAGYVQSQQIEKARELFDQMPS-----RNTSSWNTMV 346

Query: 461 DILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKD 502
               + G +++AK   + MP R + + W +++SG    G  +
Sbjct: 347 TGYAQCGNIDQAKILFDEMPQR-DCISWAAMISGYAQSGQSE 387


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 260/703 (36%), Positives = 397/703 (56%), Gaps = 56/703 (7%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYV 98
           Q+HA  V   +     + SRLL +Y       +  AR +FD++ +  ++  +  +++ Y 
Sbjct: 31  QVHAQLVVNGVDVCEFLGSRLLEVYC--QTGCVEDARRMFDKMSER-NVFSWTAIMEMYC 87

Query: 99  FNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKF 158
                 E + LF  +++  + PD+F  P V K  + L   + GK ++  +  +GF  +  
Sbjct: 88  GLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSC 147

Query: 159 VLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP--- 215
           V  S++ M+ K G +D+ RR F+ ++ KD+  WN ++ GY  KGE + A+ +F +M    
Sbjct: 148 VKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEG 207

Query: 216 -------------------------------------DRDLFSWTCLVDGFSKCGKVEIA 238
                                                D DL     LVD ++KC  VE+A
Sbjct: 208 VKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVA 267

Query: 239 REIFYRMPNRNLVSWNAM--INGYMKAGDVDSA----------CELFDDMEIRDLITWNS 286
           R  F  +   +LVSWNAM  + G+ + GD  +A          C +F ++  RD++ WNS
Sbjct: 268 RRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIACSVFSELSTRDVVVWNS 327

Query: 287 MIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNG 346
           +I+    +GR + AL+LL  M + +V  N  T+VSAL A + LA L +G+ +H +I++ G
Sbjct: 328 IISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCG 387

Query: 347 FVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFN 406
                 +   LI MY +CGSI+ +  +F  + ++ +  W  MI   GMHG    A++LF 
Sbjct: 388 LDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQ 447

Query: 407 KMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRT 466
           +   MG+KP  ITF  +L+ACSH+GL+ +G +YF MM  +Y ++P +E Y C+VD+L R 
Sbjct: 448 QFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRA 507

Query: 467 GYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLS 526
           G   E    IE MP  PN  +W SLL   R H N D+ EYAA  L ++ P + G YV+++
Sbjct: 508 GQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMA 567

Query: 527 NIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLS 586
           NIY+AAG+W+  +++R +MK+RG  K PG S IE +  LH FVVGD SHP  ++I +K+ 
Sbjct: 568 NIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKME 627

Query: 587 EMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNL 646
            +   +K  G+VPDT  VL  + D+ EKE  L  HSE++A+AFGLI+  + +P+RI+KNL
Sbjct: 628 SLYFDIKEIGYVPDTNFVLQDV-DEDEKEFSLCGHSEKIALAFGLISTTAGTPLRIIKNL 686

Query: 647 RVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           RVC DCHS TK +S +  R+II+RDN RFHHF +G CSC D+W
Sbjct: 687 RVCGDCHSATKFISKVEKRDIIMRDNYRFHHFVDGVCSCGDYW 729



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 102/424 (24%), Positives = 193/424 (45%), Gaps = 54/424 (12%)

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD 187
           +++   +L  ++ G Q+H  +   G    +F+ S L+ +Y + G ++  RR+FD M +++
Sbjct: 16  ILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERN 75

Query: 188 LVSWNCLIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREIFY 243
           + SW  +++ Y   G+ E  +KLF  M +     D F +  +    S+     + ++++ 
Sbjct: 76  VFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYD 135

Query: 244 RMPN----RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFME 299
            M +     N     ++++ ++K G +D A   F+++E +D+  WN M++GY   G F +
Sbjct: 136 YMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKK 195

Query: 300 ALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVK-NGFVVDGVLGTLLI 358
           AL +   M++  V PN  T+ SA+SA   L++L  GR +H Y +K      D ++G  L+
Sbjct: 196 ALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLV 255

Query: 359 QMYSKCGSIES-------------------------------------------ALTVFR 375
             Y+KC S+E                                            A +VF 
Sbjct: 256 DYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIACSVFS 315

Query: 376 AISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVND 435
            +S + V  W ++I      G +  ALDL  +M    ++   +T +  L ACS    +  
Sbjct: 316 ELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQ 375

Query: 436 GRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGA 495
           G+     +I   G++        L+D+  R G +++++   + MP R + V W  ++S  
Sbjct: 376 GKEIHQFIIR-CGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQR-DLVSWNVMISVY 433

Query: 496 RNHG 499
             HG
Sbjct: 434 GMHG 437



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 96/204 (47%), Gaps = 10/204 (4%)

Query: 321 SALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKK 380
           S L     L  L  G  +H+ +V NG  V   LG+ L+++Y + G +E A  +F  +S++
Sbjct: 15  SILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSER 74

Query: 381 KVGHWTA---MIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGR 437
            V  WTA   M  GLG +    + + LF  M   G++P    F  V  ACS       G+
Sbjct: 75  NVFSWTAIMEMYCGLGDY---EETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGK 131

Query: 438 RYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARN 497
             ++ M++  G E      G ++D+  + G ++ A+   E +  +  F +W  ++SG  +
Sbjct: 132 DVYDYMLS-IGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVF-MWNIMVSGYTS 189

Query: 498 HG--NKDIGEYAANNLIKVAPDTI 519
            G   K +  +    L  V P++I
Sbjct: 190 KGEFKKALNVFRKMVLEGVKPNSI 213


>gi|296084925|emb|CBI28334.3| unnamed protein product [Vitis vinifera]
          Length = 604

 Score =  496 bits (1278), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 267/660 (40%), Positives = 393/660 (59%), Gaps = 82/660 (12%)

Query: 36  ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINN-LHYARSIFDRILQHPSLVLYNLLI 94
           E +Q+HA  +KTNL+ H    SRL++      ++  L YA S+F RI QHP+  ++  LI
Sbjct: 21  ELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVFSRI-QHPNSFIFFALI 79

Query: 95  KCYVFNQRSHEALTLFCDLLD--RFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLG 152
           K +       E+L L+  +L    +     F++P V+K   +L A  EG+Q+HG V K  
Sbjct: 80  KGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLLAFDEGRQVHGQVLKTH 139

Query: 153 FGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFD 212
             FD FV +S+V MY  FGE                               +E+A ++FD
Sbjct: 140 LWFDPFVGNSMVRMYIDFGE-------------------------------IELARRVFD 168

Query: 213 EMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACEL 272
            MP+RD+ SW  ++ G+ K G++E+A E+F  MP R+LVS NAMI+GY K          
Sbjct: 169 RMPNRDVVSWNSMIAGYLKAGEIELASELFDEMPERDLVSCNAMIDGYGK---------- 218

Query: 273 FDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVL 332
                                             ML   + P+   +VS LSA+A L  +
Sbjct: 219 ---------------------------------EMLSLGLRPDGPAIVSVLSAIADLGFV 245

Query: 333 NKGRWMHSYIVKNGF-VVDGVLGTLLIQMYSKCGSIESALTVFRAIS-KKKVGHWTAMIV 390
            +G+W+H+Y+  N   +  G +G+ LI MYSKCG IE+A  VFR+IS ++ +G W +MI 
Sbjct: 246 EEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMIS 305

Query: 391 GLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIE 450
           GL +HG+A +ALD+F +M RM ++P  ITF+G+L+ CSH GLV +G+ YF  M   Y I 
Sbjct: 306 GLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIV 365

Query: 451 PTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANN 510
           P I+HYGC++D+  R G LE+A   I++MP   + + W ++LS +  HG+ +IG+ AA  
Sbjct: 366 PRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAILSASMKHGHIEIGKSAALR 425

Query: 511 LIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVV 570
            I++APD    YV+LSNIYA AG+WD V+++R MM++RG +K  G SS+   G +HEF++
Sbjct: 426 AIELAPDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGCSSMLVNGKVHEFLL 485

Query: 571 GDK-SHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAF 629
           G +     + ++ +K++E+ ++LK  G+ PD TQVLL IED+  KE+ L  HSE++AIAF
Sbjct: 486 GKELDSSYSGQVLAKIAEVVSRLKLQGYEPDLTQVLLDIEDEG-KESLLNLHSEKMAIAF 544

Query: 630 GLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           GLI++   +PI IVKNLRVC DCH   KL+S +YNR+II+RD +RFHHF+NG CSC ++W
Sbjct: 545 GLIHINKSAPIHIVKNLRVCCDCHCFMKLVSKVYNRQIIMRDQNRFHHFENGCCSCNEYW 604



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/304 (24%), Positives = 133/304 (43%), Gaps = 30/304 (9%)

Query: 225 LVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMK-------AGDVDSACELFDDME 277
           +V    KC  +   R+I  +M   NL++    ++  +        +G +D A  +F  ++
Sbjct: 9   VVSVLDKCKSLCELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVFSRIQ 68

Query: 278 IRDLITWNSMIAGYELNGRFMEALELLETML--IGDVLPNDATLVSALSAVAGLAVLNKG 335
             +   + ++I G+      +E+L L   ML  +      + ++ S L A   L   ++G
Sbjct: 69  HPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLLAFDEG 128

Query: 336 RWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMH 395
           R +H  ++K     D  +G  +++MY   G IE A  VF  +  + V  W +MI G    
Sbjct: 129 RQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKA 188

Query: 396 GMATQALDLFN-------------------KMCRMGMKPTAITFIGVLNACSHAGLVNDG 436
           G    A +LF+                   +M  +G++P     + VL+A +  G V +G
Sbjct: 189 GEIELASELFDEMPERDLVSCNAMIDGYGKEMLSLGLRPDGPAIVSVLSAIADLGFVEEG 248

Query: 437 RRYFNMMINDYGIEPTIEHYG-CLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGA 495
            ++ +  ++   IE +    G  L+D+  + GY+E A     S+  R N   W S++SG 
Sbjct: 249 -KWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGL 307

Query: 496 RNHG 499
             HG
Sbjct: 308 AIHG 311


>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
 gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 646

 Score =  496 bits (1276), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 263/613 (42%), Positives = 370/613 (60%), Gaps = 61/613 (9%)

Query: 137 AIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFG----EIDLGRRVFDAMDDKDLVSWN 192
            I++  QIH +  K G   D    + ++   A       ++D   ++F+ M  ++  SWN
Sbjct: 35  TIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSWN 94

Query: 193 CLIDGYVKKGEVE--VAMKLFDEM-------PDR-------------------------- 217
            +I G+ +  E +  +A+ LF EM       P+R                          
Sbjct: 95  TIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLA 154

Query: 218 -------DLFSWTCLVDGFSKCGKVEIAREIFYR---------MPNR-----NLVSWNAM 256
                  D F  + LV  +  CG ++ AR +FY+         M +R      +V WN M
Sbjct: 155 LKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVM 214

Query: 257 INGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPND 316
           I+GYM+ GD  +A  LFD M  R +++WN+MI+GY LNG F +A+E+   M  GD+ PN 
Sbjct: 215 IDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNY 274

Query: 317 ATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRA 376
            TLVS L A++ L  L  G W+H Y   +G  +D VLG+ LI MYSKCG IE A+ VF  
Sbjct: 275 VTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFER 334

Query: 377 ISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDG 436
           + ++ V  W+AMI G  +HG A  A+D F KM + G++P+ + +I +L ACSH GLV +G
Sbjct: 335 LPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEG 394

Query: 437 RRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGAR 496
           RRYF+ M++  G+EP IEHYGC+VD+L R+G L+EA+  I +MP++P+ VIW +LL   R
Sbjct: 395 RRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACR 454

Query: 497 NHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGS 556
             GN ++G+  AN L+ + P   G YV LSN+YA+ G W +VSE+R  MK++  RKDPG 
Sbjct: 455 MQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGC 514

Query: 557 SSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEA 616
           S I+  GVLHEFVV D SHP+  EI+S L E+ +KL+ AG+ P TTQVLL +E++ +KE 
Sbjct: 515 SLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQVLLNLEEE-DKEN 573

Query: 617 ELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFH 676
            L  HSE++A AFGLI+     PIRIVKNLR+C DCHS  KL+S +Y R+I VRD  RFH
Sbjct: 574 VLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKITVRDRKRFH 633

Query: 677 HFKNGSCSCKDFW 689
           HF++GSCSC D+W
Sbjct: 634 HFQDGSCSCMDYW 646



 Score =  172 bits (435), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 129/471 (27%), Positives = 225/471 (47%), Gaps = 92/471 (19%)

Query: 33  THKETQQLHALSVKTNLIYHSGISSRLLSLYV--DPHINNLHYARSIFDRILQHPSLVLY 90
           T ++  Q+HA+ +K+  +  +  ++ +L      D H  +L YA  IF+++ Q  +   +
Sbjct: 35  TIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQR-NCFSW 93

Query: 91  NLLIKCYVFNQRSHE--ALTLFCDLL-DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGL 147
           N +I+ +  +       A+TLF +++ D F+ P+ FT P V+K  A+ G I+EGKQIHGL
Sbjct: 94  NTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGL 153

Query: 148 VFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVF--------------DAMDDKDLVSWNC 193
             K GFG D+FV+S+LV MY   G +   R +F                  D ++V WN 
Sbjct: 154 ALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNV 213

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM------PN 247
           +IDGY++ G+ + A  LFD+M  R + SW  ++ G+S  G  + A E+F  M      PN
Sbjct: 214 MIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPN 273

Query: 248 R-NLVS---------------W-----------------NAMINGYMKAGDVDSACELFD 274
              LVS               W                 +A+I+ Y K G ++ A  +F+
Sbjct: 274 YVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFE 333

Query: 275 DMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNK 334
            +   ++ITW++MI G+ ++G+  +A++    M    V P+D   ++ L+A +   ++ +
Sbjct: 334 RLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEE 393

Query: 335 GRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGM 394
           GR   S +V     VDG+                          + ++ H+  M+  LG 
Sbjct: 394 GRRYFSQMVS----VDGL--------------------------EPRIEHYGCMVDLLGR 423

Query: 395 HGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN 445
            G+  +A +    +  M +KP  + +  +L AC   G V  G+R  N++++
Sbjct: 424 SGLLDEAEEF---ILNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMD 471


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  496 bits (1276), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 267/714 (37%), Positives = 412/714 (57%), Gaps = 45/714 (6%)

Query: 19  LPSRLHWNILKFSSTHKETQQLHALSVKT---NLIYHSGISSRLLSLYVDPHINNLHYAR 75
           +PS     +L    T +  +Q+HA  +++   N                 P  + L YA 
Sbjct: 10  IPSPSEKGLLASCKTLRHVKQIHAQILRSKMDNSNLLLLKLVLCCCTLPSPSPSALDYAL 69

Query: 76  SIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARL 135
           S+F  I  +P     N L++ +         L+L+  L       D F+ P ++K  ++L
Sbjct: 70  SLFSHI-PNPPTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLKAVSKL 128

Query: 136 GAIKEGKQIHGLVFKLGF-GFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCL 194
            A+  G +IHGL  K GF   D F+ S+L++MYA  G I   R +FD M  +D+V+WN +
Sbjct: 129 SALNLGLEIHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNIM 188

Query: 195 IDGYVKKGEVEVAMKLFDEM------PDRDLFS--------------------------- 221
           IDGY +    +  +KL++EM      PD  +                             
Sbjct: 189 IDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGF 248

Query: 222 ------WTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDD 275
                  T LV+ ++ CG + +ARE++ ++P++++V   AM++GY K G V  A  +FD 
Sbjct: 249 RVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDR 308

Query: 276 MEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKG 335
           M  +DL+ W++MI+GY  + + +EAL+L   M    ++P+  T++S +SA A +  L + 
Sbjct: 309 MVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGALVQA 368

Query: 336 RWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMH 395
           +W+H+Y  KNGF     +   LI MY+KCG++  A  VF  + +K V  W++MI    MH
Sbjct: 369 KWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMH 428

Query: 396 GMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEH 455
           G A  A+ LF++M    ++P  +TFIGVL ACSHAGLV +G+++F+ MIN++ I P  EH
Sbjct: 429 GDADSAIALFHRMKEQNIEPNGVTFIGVLYACSHAGLVEEGQKFFSSMINEHRISPQREH 488

Query: 456 YGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVA 515
           YGC+VD+ CR  +L +A   IE+MP  PN +IW SL+S  +NHG  ++GE+AA  L+++ 
Sbjct: 489 YGCMVDLYCRANHLRKAMELIETMPFPPNVIIWGSLMSACQNHGEIELGEFAATRLLELE 548

Query: 516 PDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSH 575
           PD  G  VVLSNIYA   +WD V  VR++MK +G  K+   S IE    +H F++ D+ H
Sbjct: 549 PDHDGALVVLSNIYAKEKRWDDVGLVRKLMKHKGVSKEKACSRIEVNNEVHVFMMADRYH 608

Query: 576 PQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVK 635
            Q+DEI+ KL  + ++LK  G+ P T+ +L+ +E++++KE  L  HSE+LA+ +GLI  +
Sbjct: 609 KQSDEIYKKLDAVVSQLKLVGYTPSTSGILVDLEEEEKKEVVLW-HSEKLALCYGLIGER 667

Query: 636 SRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
             S IRIVKNLR+C DCHS  KL+S ++  EI++RD +RFHHF  G CSC+D+W
Sbjct: 668 KESCIRIVKNLRICEDCHSFMKLVSKVHRIEIVMRDRTRFHHFNGGICSCRDYW 721


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 257/663 (38%), Positives = 404/663 (60%), Gaps = 12/663 (1%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           ++ +++HA  +K+ +  +  + + LLS+Y      +L  AR +FD I +  ++V +  +I
Sbjct: 113 EQGREVHAAILKSGIQPNRYLENTLLSMYAK--CGSLTDARRVFDGI-RDRNIVSWTAMI 169

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
           + +V   ++ EA   +  +      PD  T   ++        ++ G+++H  + K G  
Sbjct: 170 EAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLE 229

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
            +  V +SLV MYAK G+I   + +FD + +K++V+W  LI GY ++G+V+VA++L ++M
Sbjct: 230 LEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKM 289

Query: 215 PDRDL----FSWTCLVDGFSKCGKVE----IAREIFYRMPNRNLVSWNAMINGYMKAGDV 266
              ++     ++T ++ G +    +E    + R I      R +   NA+I  Y K G +
Sbjct: 290 QQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGL 349

Query: 267 DSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326
             A +LF D+  RD++TW +M+ GY   G   EA++L   M    + P+  T  SAL++ 
Sbjct: 350 KEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSC 409

Query: 327 AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWT 386
           +  A L +G+ +H  +V  G+ +D  L + L+ MY+KCGS++ A  VF  +S++ V  WT
Sbjct: 410 SSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWT 469

Query: 387 AMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIND 446
           AMI G   HG   +AL+ F +M + G+KP  +TF  VL+AC+H GLV +GR++F  M  D
Sbjct: 470 AMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLD 529

Query: 447 YGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEY 506
           YGI+P +EHY C VD+L R G+LEEA++ I +MP +P   +W +LLS  R H + + GE 
Sbjct: 530 YGIKPMVEHYSCFVDLLGRAGHLEEAENVILTMPFQPGPSVWGALLSACRIHSDVERGER 589

Query: 507 AANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLH 566
           AA N++K+ PD  G YV LSNIYAAAG+++   +VR++M+KR   K+PG S IE  G +H
Sbjct: 590 AAENVLKLDPDDDGAYVALSNIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVH 649

Query: 567 EFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLA 626
            F V DKSHP+  EI+++L ++  ++K  G+VPDT  VL  + D+++K   L +HSERLA
Sbjct: 650 VFHVEDKSHPEAKEIYAELGKLTEQIKEQGYVPDTRFVLHDV-DEEQKVQTLCSHSERLA 708

Query: 627 IAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCK 686
           I +GL+     +PIRIVKNLRVC DCH+ +K +S +  REII RD  RFHHF +G CSC 
Sbjct: 709 ITYGLMKTPPGTPIRIVKNLRVCGDCHTASKFISKVVGREIIARDAHRFHHFVDGVCSCG 768

Query: 687 DFW 689
           DFW
Sbjct: 769 DFW 771



 Score =  204 bits (520), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 117/412 (28%), Positives = 216/412 (52%), Gaps = 18/412 (4%)

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD 187
           +++  ARL ++++G+++H  + K G   ++++ ++L+SMYAK G +   RRVFD + D++
Sbjct: 102 LLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRN 161

Query: 188 LVSWNCLIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKCGKVEIAREI 241
           +VSW  +I+ +V   +   A K ++ M      PD+  F    L++ F+    +++ +++
Sbjct: 162 IVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTF--VSLLNAFTNPELLQVGQKV 219

Query: 242 FYRMPNRNLV----SWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRF 297
              +    L        +++  Y K GD+  A  +FD +  ++++TW  +IAGY   G+ 
Sbjct: 220 HMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQV 279

Query: 298 MEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLL 357
             ALELLE M   +V PN  T  S L        L  G+ +H YI+++G+  +  +   L
Sbjct: 280 DVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNAL 339

Query: 358 IQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA 417
           I MY KCG ++ A  +F  +  + V  WTAM+ G    G   +A+DLF +M + G+KP  
Sbjct: 340 ITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDK 399

Query: 418 ITFIGVLNACSHAGLVNDGRRYFNMMIN-DYGIEPTIEHYGCLVDILCRTGYLEEAKSTI 476
           +TF   L +CS    + +G+     +++  Y ++  ++    LV +  + G +++A+   
Sbjct: 400 MTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQ--SALVSMYAKCGSMDDARLVF 457

Query: 477 ESMPMRPNFVIWMSLLSGARNHGN-KDIGEYAANNLIK-VAPDTIGCYVVLS 526
             M  R N V W ++++G   HG  ++  EY      + + PD +    VLS
Sbjct: 458 NQMSER-NVVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLS 508



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 129/304 (42%), Gaps = 33/304 (10%)

Query: 242 FYRMPNRNLVSWNA------------MINGYMKAGDVDSACELFDDMEIRDLITWNSMIA 289
           FY  P R    WN+            M N Y    +VD+A EL       D +  N+   
Sbjct: 3   FYFFPKR---LWNSRVTQLRCGRSILMFNRYQ--SNVDTAFELTTPTVSHDQLPGNAGFR 57

Query: 290 GYEL------------NGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRW 337
             +              GR  EAL +L TM++             L   A L  L +GR 
Sbjct: 58  KVDTLANSGDVSILCKQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGRE 117

Query: 338 MHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGM 397
           +H+ I+K+G   +  L   L+ MY+KCGS+  A  VF  I  + +  WTAMI        
Sbjct: 118 VHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQ 177

Query: 398 ATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYG 457
             +A   +  M   G KP  +TF+ +LNA ++  L+  G++  +M I   G+E       
Sbjct: 178 NLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQK-VHMEIAKAGLELEPRVGT 236

Query: 458 CLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNL--IKVA 515
            LV +  + G + +A+   + +P + N V W  L++G    G  D+       +   +VA
Sbjct: 237 SLVGMYAKCGDISKAQVIFDKLPEK-NVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVA 295

Query: 516 PDTI 519
           P+ I
Sbjct: 296 PNKI 299


>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
 gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
 gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 842

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 265/692 (38%), Positives = 405/692 (58%), Gaps = 45/692 (6%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYV 98
           Q+H L VK        + + L+  Y +     L  AR +FD + +  ++V +  +I  Y 
Sbjct: 155 QIHGLIVKMGYAKDLFVQNSLVHFYAE--CGELDSARKVFDEMSER-NVVSWTSMICGYA 211

Query: 99  FNQRSHEALTLFCDLL-DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
               + +A+ LF  ++ D  + P++ T+ CVI   A+L  ++ G++++  +   G   + 
Sbjct: 212 RRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVND 271

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM--- 214
            ++S+LV MY K   ID+ +R+FD     +L   N +   YV++G    A+ +F+ M   
Sbjct: 272 LMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDS 331

Query: 215 ---PDR-----------------------------DLFSW----TCLVDGFSKCGKVEIA 238
              PDR                                SW      L+D + KC + + A
Sbjct: 332 GVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTA 391

Query: 239 REIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFM 298
             IF RM N+ +V+WN+++ GY++ G+VD+A E F+ M  +++++WN++I+G      F 
Sbjct: 392 FRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFE 451

Query: 299 EALELLETMLIGDVLPNDA-TLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLL 357
           EA+E+  +M   + +  D  T++S  SA   L  L+  +W++ YI KNG  +D  LGT L
Sbjct: 452 EAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTL 511

Query: 358 IQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA 417
           + M+S+CG  ESA+++F +++ + V  WTA I  + M G A +A++LF+ M   G+KP  
Sbjct: 512 VDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDG 571

Query: 418 ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIE 477
           + F+G L ACSH GLV  G+  F  M+  +G+ P   HYGC+VD+L R G LEEA   IE
Sbjct: 572 VAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIE 631

Query: 478 SMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDK 537
            MPM PN VIW SLL+  R  GN ++  YAA  +  +AP+  G YV+LSN+YA+AG+W+ 
Sbjct: 632 DMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWND 691

Query: 538 VSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGH 597
           +++VR  MK++G RK PG+SSI+ RG  HEF  GD+SHP+   I + L E+  +    GH
Sbjct: 692 MAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGH 751

Query: 598 VPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTK 657
           VPD + VL+ + D+KEK   L  HSE+LA+A+GLI+    + IRIVKNLRVC+DCHS  K
Sbjct: 752 VPDLSNVLMDV-DEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAK 810

Query: 658 LLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
             S +YNREII+RDN+RFH+ + G CSC DFW
Sbjct: 811 FASKVYNREIILRDNNRFHYIRQGKCSCGDFW 842



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 127/454 (27%), Positives = 218/454 (48%), Gaps = 42/454 (9%)

Query: 70  NLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVI 129
           +L +A+ +F+    + +  +YN LI+ Y  +   +EA+ LF  +++  + PD +T P  +
Sbjct: 82  SLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGL 141

Query: 130 KGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLV 189
              A+  A   G QIHGL+ K+G+  D FV +SLV  YA+ GE+D  R+VFD M ++++V
Sbjct: 142 SACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVV 201

Query: 190 SWNCLIDGYVKKGEVEVAMKLF-----DEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYR 244
           SW  +I GY ++   + A+ LF     DE    +  +  C++   +K   +E   +++  
Sbjct: 202 SWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAF 261

Query: 245 MPNR----NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEA 300
           + N     N +  +A+++ YMK   +D A  LFD+    +L   N+M + Y   G   EA
Sbjct: 262 IRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREA 321

Query: 301 LELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQM 360
           L +   M+   V P+  +++SA+S+ + L  +  G+  H Y+++NGF     +   LI M
Sbjct: 322 LGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDM 381

Query: 361 YSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKM------------ 408
           Y KC   ++A  +F  +S K V  W +++ G   +G    A + F  M            
Sbjct: 382 YMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTII 441

Query: 409 ----------------CRM----GMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYG 448
                           C M    G+    +T + + +AC H G + D  ++    I   G
Sbjct: 442 SGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGAL-DLAKWIYYYIEKNG 500

Query: 449 IEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMR 482
           I+  +     LVD+  R G  E A S   S+  R
Sbjct: 501 IQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNR 534



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 103/405 (25%), Positives = 181/405 (44%), Gaps = 54/405 (13%)

Query: 138 IKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFG---EIDLGRRVFDAMDD-KDLVSWNC 193
           I E K  H  + K G   D   ++ LV+   + G    +   + VF+  +       +N 
Sbjct: 45  IDELKMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYNS 104

Query: 194 LIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKCGK-------VEIARE 240
           LI GY   G    A+ LF  M      PD+  F +     G S C K       ++I   
Sbjct: 105 LIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPF-----GLSACAKSRAKGNGIQIHGL 159

Query: 241 IFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEA 300
           I      ++L   N++++ Y + G++DSA ++FD+M  R++++W SMI GY       +A
Sbjct: 160 IVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDA 219

Query: 301 LELLETMLIGD-VLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQ 359
           ++L   M+  + V PN  T+V  +SA A L  L  G  ++++I  +G  V+ ++ + L+ 
Sbjct: 220 VDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVD 279

Query: 360 MYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAIT 419
           MY KC +I+ A  +F       +    AM       G+  +AL +FN M   G++P  I+
Sbjct: 280 MYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRIS 339

Query: 420 FIGVLNACS-----------HAGLVNDGRRYFNMMIN-------------------DYGI 449
            +  +++CS           H  ++ +G   ++ + N                   D   
Sbjct: 340 MLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMS 399

Query: 450 EPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG 494
             T+  +  +V      G ++ A  T E+MP + N V W +++SG
Sbjct: 400 NKTVVTWNSIVAGYVENGEVDAAWETFETMPEK-NIVSWNTIISG 443


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 265/716 (37%), Positives = 411/716 (57%), Gaps = 50/716 (6%)

Query: 9   SSPIHALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHI 68
           ++P+H+  +   S     +L+  +T  E  Q+H+ ++KT L  +    ++++        
Sbjct: 28  NTPLHSFVKSPIS-----LLETCNTMYEINQIHSQTIKTGLSSNHLFLTKVIIFCCTKES 82

Query: 69  NNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCV 128
            +++YAR +FD I Q PS+ ++N +IK Y     S   ++L+  +L   + PD FT P +
Sbjct: 83  GDVYYARKVFDEIPQ-PSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFL 141

Query: 129 IKGAARLGAIKEGKQIHGLVFKLGF-GFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD 187
           +KG  +  A+K GK +       GF   + FV    + +++  G ++  R++FD  D  +
Sbjct: 142 LKGFTKDMALKYGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWE 201

Query: 188 LVSWNCLIDGYVKKGEVEVAMKLFDEM--------PD--------------RDLFSWTC- 224
           +V+WN ++ GY +    E + +LF EM        P+              +DL    C 
Sbjct: 202 VVTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCI 261

Query: 225 -------------------LVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGD 265
                              L+D F+ CG+++ AR +F  M  R+++SW +++ G+     
Sbjct: 262 YNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCR 321

Query: 266 VDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSA 325
           +D A + FD M  RD ++W +MI GY    RF E L L   M + +V P++ T+VS L+A
Sbjct: 322 IDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTA 381

Query: 326 VAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHW 385
            A L  L  G W  +YI KN    D  +G  LI MY KCG++E A  +F  + KK    W
Sbjct: 382 CAHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTW 441

Query: 386 TAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN 445
           TAMIVGL  +G   +AL +F+ M    + P  IT+IGV+ AC+H GLV  G+ +F+ M  
Sbjct: 442 TAMIVGLANNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMAV 501

Query: 446 DYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGE 505
            +GI+P + HYGC+VD+L R G+L+EA   I +MP++PN ++W SLL   R H N  + E
Sbjct: 502 QHGIKPNLTHYGCMVDLLGRAGHLKEALEVIMNMPVKPNSIVWGSLLGACRVHKNVQLAE 561

Query: 506 YAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVL 565
            AAN ++++ P+    YV+L NIYAA  +W  +  VR+MM +RG +K PG S +E  G++
Sbjct: 562 MAANEILELEPENGAVYVLLCNIYAACKKWKNLHNVRKMMMERGIKKIPGCSLMEMNGIV 621

Query: 566 HEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERL 625
           +EFV GDKSHPQ+ EI++KL  M+  L  AG+ PDT++V L + ++ +KE  L  HSE+L
Sbjct: 622 YEFVAGDKSHPQSKEIYAKLENMKQDLSNAGYSPDTSEVFLDVGEE-DKETALYMHSEKL 680

Query: 626 AIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNG 681
           AIA+ LI+      IRIVKNLR+C DCH +  ++S +YNRE+IVRD +RFHHF++G
Sbjct: 681 AIAYALISSGKGVTIRIVKNLRMCVDCHHMAMVVSKVYNRELIVRDKTRFHHFRHG 736


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 259/644 (40%), Positives = 399/644 (61%), Gaps = 14/644 (2%)

Query: 55  ISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL 114
           + + L S+Y      +L  AR +FDR+ +   +V +N +I  Y  N + +EAL LF ++ 
Sbjct: 157 VGTALASMYTK--CGSLENARQVFDRMPKR-DVVSWNAIIAGYSQNGQPYEALALFSEMQ 213

Query: 115 DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEID 174
              + P++ TL  V+   A L A+++GKQIH    + G   D  V++ LV+MYAK G ++
Sbjct: 214 VNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVN 273

Query: 175 LGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWT-CLVDGFSKCG 233
              ++F+ M  +D+ SWN +I GY    +   A+  F+ M  R +   +  +V     C 
Sbjct: 274 TAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACA 333

Query: 234 ---KVEIAREIF-YRMPN---RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNS 286
               +E  ++I  Y + +    N V  NA++N Y K G+V+SA +LF+ M  ++++ WN+
Sbjct: 334 HLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNA 393

Query: 287 MIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNG 346
           +I+GY  +G   EAL L   M    + P+   +VS L A A    L +G+ +H Y +++G
Sbjct: 394 IISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSG 453

Query: 347 FVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFN 406
           F  + V+GT L+ +Y+KCG++ +A  +F  + ++ V  WT MI+  G+HG    AL LF+
Sbjct: 454 FESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFS 513

Query: 407 KMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRT 466
           KM   G K   I F  +L ACSHAGLV+ G +YF  M +DYG+ P +EHY CLVD+L R 
Sbjct: 514 KMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRA 573

Query: 467 GYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLS 526
           G+L+EA   I++M + P+  +W +LL   R H N ++GE AA +L ++ PD  G YV+LS
Sbjct: 574 GHLDEANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKHLFELDPDNAGYYVLLS 633

Query: 527 NIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIE-HRGVLHEFVVGDKSHPQTDEIHSKL 585
           NIYA A +W+ V+++R+MMK++G +K PG S +  HR V   F+VGD++HPQ+++I++ L
Sbjct: 634 NIYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVVAVHRDV-QTFLVGDRTHPQSEQIYAML 692

Query: 586 SEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKN 645
             +  +++ AG+VP+T   L  +E++  KE  L +HSE+LAI+FG+IN     PIRI+KN
Sbjct: 693 EILYEQMRKAGYVPNTNLALQDVEEEA-KENILSSHSEKLAISFGIINTSPGIPIRIMKN 751

Query: 646 LRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           LRVC+DCH+ TK +S I  REIIVRD +RFHH KNG CSC D+W
Sbjct: 752 LRVCSDCHNATKFISKIVGREIIVRDANRFHHVKNGFCSCGDYW 795



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 101/323 (31%), Positives = 170/323 (52%), Gaps = 12/323 (3%)

Query: 187 DLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDRDLF---SWTCLVDGFSKCGKVEI 237
           + V W   I GYVK G    A++L+ +M      PD+ +F      C      + G+ ++
Sbjct: 84  NAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGR-KV 142

Query: 238 AREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRF 297
             +I  R    +++   A+ + Y K G +++A ++FD M  RD+++WN++IAGY  NG+ 
Sbjct: 143 HEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQP 202

Query: 298 MEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLL 357
            EAL L   M +  + PN +TLVS +   A L  L +G+ +H Y +++G   D ++   L
Sbjct: 203 YEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGL 262

Query: 358 IQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA 417
           + MY+KCG++ +A  +F  +  + V  W A+I G  ++    +AL  FN+M   G+KP +
Sbjct: 263 VNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNS 322

Query: 418 ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIE 477
           IT + VL AC+H   +  G++     I   G E        LV++  + G +  A    E
Sbjct: 323 ITMVSVLPACAHLFALEQGQQIHGYAIRS-GFESNDVVGNALVNMYAKCGNVNSAYKLFE 381

Query: 478 SMPMRPNFVIWMSLLSGARNHGN 500
            MP + N V W +++SG   HG+
Sbjct: 382 RMP-KKNVVAWNAIISGYSQHGH 403


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 272/677 (40%), Positives = 404/677 (59%), Gaps = 23/677 (3%)

Query: 26  NILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDP--HINNLHYARSIFDRILQ 83
           ++L  S   +   Q+HA  V + L+  SG    L++ +V+   +I  + YAR +FD    
Sbjct: 76  SLLDHSVHKRHLNQIHAQLVVSGLV-ESGF---LVTKFVNASWNIGEIGYARKVFDE-FP 130

Query: 84  HPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQ 143
            PS+ L+N +I+ Y  +    +A+ ++  +    + PD FTLPCV+K  + +  ++ GK+
Sbjct: 131 EPSVFLWNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKR 190

Query: 144 IHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGE 203
           +HG +F+LGF  D FV + LV++YAK G ++  R VF+ +DD+++VSW  +I GY + G 
Sbjct: 191 VHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGL 250

Query: 204 VEVAMKLFDEMPDRDL-FSWTCLVD---GFSKCGKVEIAREIF-------YRMPNRNLVS 252
              A+++F +M  R++   W  LV     ++    +E  + I               L+S
Sbjct: 251 PMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLIS 310

Query: 253 WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDV 312
             AM   Y K G V  A   FD MEI +++ WN+MI+GY  NG   EA+ L + M+  ++
Sbjct: 311 LTAM---YAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNI 367

Query: 313 LPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALT 372
             +  T+ SA+ A A +  L+  +WM  YI K  +  D  + T LI M++KCGS++ A  
Sbjct: 368 RTDSITVRSAILACAQVGSLDLAKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLARE 427

Query: 373 VFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGL 432
           VF     K V  W+AMIVG G+HG    A+DLF  M + G+ P  +TF+G+L AC+H+GL
Sbjct: 428 VFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACNHSGL 487

Query: 433 VNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLL 492
           V +G   F+ M   YGIE   +HY C+VD+L R+G+L EA   I +MP+ P   +W +LL
Sbjct: 488 VEEGWELFHSM-KYYGIEARHQHYACVVDLLGRSGHLNEAYDFITTMPIEPGVSVWGALL 546

Query: 493 SGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRK 552
              + + +  +GEYAA  L  + P   G YV LSN+YA++  WD V++VR +M+++G  K
Sbjct: 547 GACKIYRHVTLGEYAAEQLFSLDPFNTGHYVQLSNLYASSRLWDSVAKVRILMREKGLSK 606

Query: 553 DPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQK 612
           D G S IE  G L  F VGDKSHP+  EI  +L  +  +LK AG +P    VL  + +Q+
Sbjct: 607 DLGYSLIEINGKLQAFRVGDKSHPRFKEIFEELESLERRLKEAGFIPHIESVLHDL-NQE 665

Query: 613 EKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDN 672
           EKE  L NHSERLAIA+GLI+    + +RI KNLR C +CHS TKL+S + NREI+VRD 
Sbjct: 666 EKEETLCNHSERLAIAYGLISTAPGTTLRITKNLRACINCHSATKLISKLVNREIVVRDA 725

Query: 673 SRFHHFKNGSCSCKDFW 689
           +RFHHFKNG CSC+D+W
Sbjct: 726 NRFHHFKNGVCSCRDYW 742


>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
          Length = 2355

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 258/618 (41%), Positives = 374/618 (60%), Gaps = 35/618 (5%)

Query: 70  NLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCD--LLDRFLLPDNFTLPC 127
           NL ++  IF+  L  P++  YN L+K +  +   H  ++ F +  +L     PD +T   
Sbjct: 73  NLRHSVLIFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTS 132

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD 187
           V+K  A L  + EG+++H  V K G   + FV +SLV +Y K G                
Sbjct: 133 VLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVG---------------- 176

Query: 188 LVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPN 247
               NC            +A KLFDEM  RD+ SW  L+ G+   G V+ AR +F  M  
Sbjct: 177 ---CNC------------IAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMME 221

Query: 248 RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETM 307
           +NLVSW+ MI+GY + G+++ A +LF++M +R++++WN+MIAGY  N ++ +A+EL   M
Sbjct: 222 KNLVSWSTMISGYARVGNLEEARQLFENMPMRNVVSWNAMIAGYAQNEKYADAIELFRQM 281

Query: 308 L-IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGS 366
              G + PND TLVS LSA A L  L+ G+W+H +I +N   V   LG  L  MY+KCG 
Sbjct: 282 QHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGC 341

Query: 367 IESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNA 426
           +  A  VF  + ++ V  W+ +I+GL M+G A +A + F +M   G++P  I+F+G+L A
Sbjct: 342 VLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTA 401

Query: 427 CSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFV 486
           C+HAGLV+ G  YF+MM   YGI P IEHYGC+VD+L R G L++A+S I SMPM+PN +
Sbjct: 402 CTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVI 461

Query: 487 IWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMK 546
           +W +LL G R + + + GE     ++++  +  G  V L+N+YA+ G+ D  +  R  M+
Sbjct: 462 VWGALLGGCRIYKDAERGERVVWRILELDSNHSGSLVYLANVYASMGRLDDAASCRLRMR 521

Query: 547 KRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLL 606
                K PG S IE    ++EF +GD SHPQ+  I+S + E++ K+K AG+ P T  V+ 
Sbjct: 522 DNKSMKTPGCSWIEINNSVYEFFMGDSSHPQSLRIYSMIRELKWKMKVAGYKPKTDLVIH 581

Query: 607 CIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNRE 666
            I D++EKE  L  HSE+LA+AFGLIN    + IRIVKNLRVCNDCH   K++S I  RE
Sbjct: 582 NI-DEEEKEDALSTHSEKLALAFGLINTSEGTTIRIVKNLRVCNDCHDAIKIISKIVERE 640

Query: 667 IIVRDNSRFHHFKNGSCS 684
           I+VRD SRFHHFK+G CS
Sbjct: 641 IVVRDRSRFHHFKDGKCS 658



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 115/234 (49%), Gaps = 12/234 (5%)

Query: 68  INNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL-DRFLLPDNFTLP 126
           + NL  AR +F+ +    ++V +N +I  Y  N++  +A+ LF  +  +  L P++ TL 
Sbjct: 237 VGNLEEARQLFENMPMR-NVVSWNAMIAGYAQNEKYADAIELFRQMQHEGGLAPNDVTLV 295

Query: 127 CVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK 186
            V+   A LGA+  GK IH  + +       F+ ++L  MYAK G +   + VF  M ++
Sbjct: 296 SVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHER 355

Query: 187 DLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIF 242
           D++SW+ +I G    G    A   F EM +  L     S+  L+   +  G V+   E F
Sbjct: 356 DVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYF 415

Query: 243 YRMPN-----RNLVSWNAMINGYMKAGDVDSACELFDDMEIR-DLITWNSMIAG 290
             MP        +  +  +++   +AG +D A  L + M ++ ++I W +++ G
Sbjct: 416 DMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGG 469


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  493 bits (1270), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 264/658 (40%), Positives = 381/658 (57%), Gaps = 51/658 (7%)

Query: 74  ARSIFDRILQ---HPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIK 130
            + I D +L+      + + N LI  Y       +A  +F    D   + D  +   ++ 
Sbjct: 145 GKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVF----DGSSVLDMVSWNSMLA 200

Query: 131 GAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVS 190
           G   +G ++E K ++  + +          +S++ ++ K G ++   ++F+ M  KDLVS
Sbjct: 201 GYVLVGNVEEAKDVYDRMPERNV----IASNSMIVLFGKKGNVEEACKLFNEMKQKDLVS 256

Query: 191 WNCLIDGYVKKGEVEVAMKLFDEMP------------------DRDLFSWT--------- 223
           W+ LI  Y +    E A+ LF EM                    R L   T         
Sbjct: 257 WSALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVV 316

Query: 224 ------------CLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACE 271
                        L+  +S C +V  A+++F      + +SWN+MI+GY+K G+++ A  
Sbjct: 317 KVGIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARA 376

Query: 272 LFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAV 331
           LFD M  +D ++W++MI+GY    RF E L L + M I    P++  LVS +SA   LA 
Sbjct: 377 LFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAA 436

Query: 332 LNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVG 391
           L++G+W+H+YI KNG  ++ +LGT LI MY K G +E AL VF+ + +K V  W A+I+G
Sbjct: 437 LDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKGLEEKGVSTWNALILG 496

Query: 392 LGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP 451
           L M+G+  ++L  F++M   G+ P  ITF+ VL AC H GLV++G R+FN MI ++ I P
Sbjct: 497 LAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGACRHMGLVDEGHRHFNSMIQEHKIGP 556

Query: 452 TIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNL 511
            I+HYGC+VD+L R G L+EA+  IESMPM P+   W +LL   + +G+ + GE     L
Sbjct: 557 NIKHYGCMVDLLGRAGMLKEAEELIESMPMAPDVSTWGALLGACKKYGDNETGERIGRKL 616

Query: 512 IKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVG 571
           +++ PD  G  V+LSNIYA+ G W  V EVR MM++ G  K PG S IE  G +HEF+ G
Sbjct: 617 VELHPDHDGFNVLLSNIYASKGNWVDVLEVRGMMRQHGVVKTPGCSMIEAHGRVHEFLAG 676

Query: 572 DKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGL 631
           DK+HPQ + I   L EM  KLK  G+ PDT +V L I D++EKE  L  HSE+LAIAFGL
Sbjct: 677 DKTHPQNEHIEHMLDEMAKKLKLEGYAPDTREVSLDI-DEEEKETTLFRHSEKLAIAFGL 735

Query: 632 INVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           I +   +PIRIVKNLR+CNDCH+  KL+S  +NREI+VRD  RFHHFK GSCSC D+W
Sbjct: 736 IAIDPPTPIRIVKNLRICNDCHTAAKLISKAFNREIVVRDRHRFHHFKQGSCSCMDYW 793



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 138/524 (26%), Positives = 241/524 (45%), Gaps = 67/524 (12%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           K+  Q+ +  + +     S  +SRLL    +    N++ +  IF  I ++P+  + N ++
Sbjct: 40  KQFNQILSQMILSGFFKDSFAASRLLKFSTELPFININQSYQIFSHI-ENPNGFICNTMM 98

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
           K Y+      +A+ ++  +L+  +  DN+T P + +  +   A  +GK I   V K+GF 
Sbjct: 99  KGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQSCSIRLAEFDGKCIQDHVLKVGFD 158

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
            D ++ ++L++MYA  G +   R+VFD     D+VSWN ++ GYV  G VE A  ++D M
Sbjct: 159 SDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEEAKDVYDRM 218

Query: 215 PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFD 274
           P+R++ +   ++  F K G VE A ++F  M  ++LVSW+A+I           +C    
Sbjct: 219 PERNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALI-----------SC---- 263

Query: 275 DMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNK 334
                           YE N  + EAL L + M    ++ ++  ++S LSA + L V+  
Sbjct: 264 ----------------YEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACSRLLVVIT 307

Query: 335 GRWMHSYIVKNGFVVDGVLGTLLIQMYS-------------------------------K 363
           G+ +H  +VK G      L   LI MYS                               K
Sbjct: 308 GKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVK 367

Query: 364 CGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGV 423
           CG IE A  +F ++  K    W+AMI G       T+ L LF +M   G KP     + V
Sbjct: 368 CGEIEKARALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSV 427

Query: 424 LNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRP 483
           ++AC+H   ++ G ++ +  I   G++  I     L+++  + G +E+A    + +  + 
Sbjct: 428 ISACTHLAALDQG-KWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKGLEEK- 485

Query: 484 NFVIWMSLLSGARNHG--NKDIGEYAANNLIKVAPDTIGCYVVL 525
               W +L+ G   +G  +K +  ++      V P+ I    VL
Sbjct: 486 GVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVL 529


>gi|297737088|emb|CBI26289.3| unnamed protein product [Vitis vinifera]
          Length = 668

 Score =  493 bits (1269), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 269/672 (40%), Positives = 392/672 (58%), Gaps = 45/672 (6%)

Query: 28  LKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVD-PHINNLHYARSIFD----RIL 82
           L+   T  + +QLH    K  L       ++L++   +     +L YAR  F+     + 
Sbjct: 32  LRCCKTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDVR 91

Query: 83  QHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGK 142
              +L + N LI+ Y       EA+ L+  +L   + P+++T P V+ G  ++ A  EG 
Sbjct: 92  SDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGI 151

Query: 143 QIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKG 202
           Q+HG V K+G   D F+                                NCLI  Y + G
Sbjct: 152 QVHGSVVKMGLEEDVFI-------------------------------QNCLIHFYAECG 180

Query: 203 EVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMK 262
            ++   K+F+ M +R++ SWT L+ G+++  + + A  +F+ M N+ +V  NA+++ YMK
Sbjct: 181 HMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFEMLNKVMV--NALVDMYMK 238

Query: 263 AGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSA 322
            G +D+A  LFD+   R+L+ +N++++ Y   G   EAL +L+ ML     P+  T++SA
Sbjct: 239 CGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSA 298

Query: 323 LSAVAGLAVLNKGR-----WMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAI 377
           +SA A L  L  G+     W+H+YI KNG   D  L T L+ M+++CG  +SA+ VF  +
Sbjct: 299 ISASAQLVDLFYGKVCHGYWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKM 358

Query: 378 SKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGR 437
           +++ V  WTA I  + M G    A  LFN+M   G+KP  + F+ VL ACSH G V  G 
Sbjct: 359 TERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGL 418

Query: 438 RYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARN 497
             F++M  D+GI P IEHYGC+VD+L R G L EA   I+SMPM PN V+W SLL+  R 
Sbjct: 419 HIFSLM-EDHGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLLAACRV 477

Query: 498 HGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSS 557
           H N ++  YAA  + ++AP   G +V+LSNIYA+AG+W  V+ VR  ++++G RK PGSS
Sbjct: 478 HKNVEMATYAAERINELAPQRAGVHVLLSNIYASAGKWTDVARVRLNLREKGVRKVPGSS 537

Query: 558 SIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAE 617
           S++  GV+HEF  GD+SHP+   I   L EM  +   AGH+PD + VLL + D++EKE  
Sbjct: 538 SVQVNGVIHEFTSGDESHPEMTHIALMLQEMNCRFSDAGHIPDLSNVLLDV-DEQEKEYL 596

Query: 618 LENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHH 677
           L  HSE+LAIAFGLI      PIR+VKNLR+C+DCHS  K+ S IYNREIIVRDN+RFH 
Sbjct: 597 LSRHSEKLAIAFGLIATGRSMPIRVVKNLRMCSDCHSFAKMASIIYNREIIVRDNNRFHF 656

Query: 678 FKNGSCSCKDFW 689
           F+ G CSC D+W
Sbjct: 657 FRQGLCSCCDYW 668


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  493 bits (1269), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 270/698 (38%), Positives = 397/698 (56%), Gaps = 43/698 (6%)

Query: 31  SSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLY 90
           S+   E  Q+H   VK        + + L+  Y +     +   R +FD++ +  ++V +
Sbjct: 152 SAALTEGFQVHGAIVKMGFERDMFVENSLIHFYGE--CGEIDCMRRVFDKMSER-NVVSW 208

Query: 91  NLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFK 150
             LI  Y       EA++LF ++++  + P++ T+  VI   A+L  ++ G+Q+   + +
Sbjct: 209 TSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGE 268

Query: 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
           L    +  ++++LV MY K G ID  R++FD   DK+LV +N ++  YV++G     + +
Sbjct: 269 LELEVNALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAV 328

Query: 211 FDEM------PDR-----------------------------DLFSW----TCLVDGFSK 231
             EM      PDR                              L  W      +++ + K
Sbjct: 329 LGEMLKHGPRPDRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMK 388

Query: 232 CGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGY 291
           CGK E+A  +F RM N+  VSWN++I G+++ GD++SA ++F  M   DL++WN+MI   
Sbjct: 389 CGKQEMACRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGAL 448

Query: 292 ELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDG 351
                F EA+EL   M    +  +  T+V   SA   L  L+  +W+H YI K     D 
Sbjct: 449 VQESMFKEAIELFRVMQSEGITADKVTMVGVASACGYLGALDLAKWIHGYIKKKDIHFDM 508

Query: 352 VLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRM 411
            LGT L+ M+++CG  +SA+ VF  + K+ V  WTA I  + M G  T A++LF++M + 
Sbjct: 509 HLGTALVDMFARCGDPQSAMQVFNKMVKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQ 568

Query: 412 GMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEE 471
           G+KP  + F+ +L A SH GLV  G   F  M + YGI P   HYGC+VD+L R G L E
Sbjct: 569 GIKPDGVVFVALLTALSHGGLVEQGWHIFRSMKDIYGIAPQAVHYGCMVDLLGRAGLLSE 628

Query: 472 AKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAA 531
           A S I SM M PN VIW SLL+  R H N DI  YAA  + ++ P+  G +V+LSNIYA+
Sbjct: 629 ALSLINSMQMEPNDVIWGSLLAACRVHKNVDIAAYAAERISELDPERTGIHVLLSNIYAS 688

Query: 532 AGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNK 591
           AG+WD V++VR  +K++G  K PGSSSIE  G + EF  GD+SHP+   I   L E+  +
Sbjct: 689 AGRWDDVAKVRLHLKEKGAHKMPGSSSIEINGKIFEFTTGDESHPEMTHIEPMLKEICCR 748

Query: 592 LKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCND 651
           L+  G+VPD T VLL + ++KEKE  L  HSE+LAIAF LI+     PIR+ KNLR+C+D
Sbjct: 749 LRDIGYVPDLTNVLLDV-NEKEKEYLLSRHSEKLAIAFALISTGQGMPIRVAKNLRICSD 807

Query: 652 CHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           CHS  KL+S  Y+REIIVRDN+RFH F+ G CSC D+W
Sbjct: 808 CHSFAKLVSKSYSREIIVRDNNRFHFFQQGFCSCGDYW 845



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 144/517 (27%), Positives = 243/517 (47%), Gaps = 46/517 (8%)

Query: 28  LKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVD-PHINNLHYARSIFDRILQHPS 86
            K   T  E +QLH+   K  L +H    + L+S   +     +L YA+   +  ++   
Sbjct: 40  FKKCKTMTELKQLHSQITKNGLNHHPLSLTNLISSCTEMGTFESLEYAQKALELFIEDNG 99

Query: 87  LV----LYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGK 142
           ++    +++ LI+ +      ++A+ +F  L+    +PDNFT P V+    +  A+ EG 
Sbjct: 100 IMGTHYMFSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGF 159

Query: 143 QIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKG 202
           Q+HG + K+GF  D FV +SL+  Y + GEID  RRVFD M ++++VSW  LI GY K+G
Sbjct: 160 QVHGAIVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRG 219

Query: 203 EVEVAMKLFDEMPDRDLFSWTCLVDG-FSKCGKV-------EIAREIFYRMPNRNLVSWN 254
             + A+ LF EM +  +   +  + G  S C K+       ++   I       N +  N
Sbjct: 220 CYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVN 279

Query: 255 AMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLP 314
           A+++ YMK G +D A ++FD+   ++L+ +N++++ Y   G   E L +L  ML     P
Sbjct: 280 ALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRP 339

Query: 315 NDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGS-------- 366
           +  T++SA+SA + L  ++ G+W H Y+++NG      +   +I MY KCG         
Sbjct: 340 DRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVF 399

Query: 367 -----------------------IESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALD 403
                                  +ESA  +F A+    +  W  MI  L    M  +A++
Sbjct: 400 DRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIE 459

Query: 404 LFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDIL 463
           LF  M   G+    +T +GV +AC + G + D  ++ +  I    I   +     LVD+ 
Sbjct: 460 LFRVMQSEGITADKVTMVGVASACGYLGAL-DLAKWIHGYIKKKDIHFDMHLGTALVDMF 518

Query: 464 CRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGN 500
            R G  + A      M  R +   W + +      GN
Sbjct: 519 ARCGDPQSAMQVFNKMVKR-DVSAWTAAIGAMAMEGN 554



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 96/402 (23%), Positives = 185/402 (46%), Gaps = 32/402 (7%)

Query: 138 IKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFG---EIDLGRRVFDA-MDDKDLVS--- 190
           + E KQ+H  + K G       L++L+S   + G    ++  ++  +  ++D  ++    
Sbjct: 46  MTELKQLHSQITKNGLNHHPLSLTNLISSCTEMGTFESLEYAQKALELFIEDNGIMGTHY 105

Query: 191 -WNCLIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKCGKVEIAREIF- 242
            ++ LI G+   G    A+ +F ++      PD   F +       S C K     E F 
Sbjct: 106 MFSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFV-----LSACTKSAALTEGFQ 160

Query: 243 -----YRMP-NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGR 296
                 +M   R++   N++I+ Y + G++D    +FD M  R++++W S+I GY   G 
Sbjct: 161 VHGAIVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGC 220

Query: 297 FMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTL 356
           + EA+ L   M+   + PN  T+V  +SA A L  L  G  + + I +    V+ ++   
Sbjct: 221 YKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNA 280

Query: 357 LIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT 416
           L+ MY KCG+I+ A  +F     K +  +  ++      G+A + L +  +M + G +P 
Sbjct: 281 LVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPD 340

Query: 417 AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTI 476
            IT +  ++ACS    V+ G+     ++ + G+E        ++++  + G  E A    
Sbjct: 341 RITMLSAVSACSELDDVSCGKWCHGYVLRN-GLEGWDNVCNAIINMYMKCGKQEMACRVF 399

Query: 477 ESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDT 518
           + M +    V W SL++G   +G+ +    +A  +    PD+
Sbjct: 400 DRM-LNKTRVSWNSLIAGFVRNGDME----SAWKIFSAMPDS 436


>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
 gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 722

 Score =  493 bits (1268), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 264/707 (37%), Positives = 408/707 (57%), Gaps = 48/707 (6%)

Query: 28  LKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSL 87
           L F  +    +QLHA  ++T  + +  ++S L +L V     NL YA ++F  I   P  
Sbjct: 19  LSFCKSLNHIKQLHAHILRT--VINHKLNSFLFNLSVSSSSINLSYALNVFSSIPSPPES 76

Query: 88  VLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGL 147
           +++N  ++    +      +  +  +       D F+   ++K  +++ A+ EG ++HG+
Sbjct: 77  IVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGMELHGV 136

Query: 148 VFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVA 207
            FK+    D FV +  + MYA  G I+  R VFD M  +D+V+WN +I+ Y + G V+ A
Sbjct: 137 AFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEA 196

Query: 208 MKLFDEMPD--------------------------RDLFSW-------------TCLVDG 228
            KLF+EM D                          R ++ +             T LV  
Sbjct: 197 FKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTM 256

Query: 229 FSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMI 288
           ++  G +++ARE F +M  RNL    AM++GY K G +D A  +FD  E +DL+ W +MI
Sbjct: 257 YAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMI 316

Query: 289 AGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFV 348
           + Y  +    EAL + E M    + P+  ++ S +SA A L +L+K +W+HS I  NG  
Sbjct: 317 SAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLE 376

Query: 349 VDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKM 408
            +  +   LI MY+KCG +++   VF  + ++ V  W++MI  L MHG A+ AL LF +M
Sbjct: 377 SELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARM 436

Query: 409 CRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGY 468
            +  ++P  +TF+GVL  CSH+GLV +G++ F  M ++Y I P +EHYGC+VD+  R   
Sbjct: 437 KQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANL 496

Query: 469 LEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNI 528
           L EA   IESMP+  N VIW SL+S  R HG  ++G++AA  ++++ PD  G  V++SNI
Sbjct: 497 LREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNI 556

Query: 529 YAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEM 588
           YA   +W+ V  +R +M+++   K+ G S I+  G  HEF++GDK H Q++EI++KL E+
Sbjct: 557 YAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIYAKLDEV 616

Query: 589 RNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSP------IRI 642
            +KLK AG+VPD   VL+ +E++++K+  L  HSE+LA+ FGL+N +          IRI
Sbjct: 617 VSKLKLAGYVPDCGSVLVDVEEEEKKDLVLW-HSEKLALCFGLMNEEKEEEKDSCGVIRI 675

Query: 643 VKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           VKNLRVC DCH   KL+S +Y REIIVRD +RFH +KNG CSC+D+W
Sbjct: 676 VKNLRVCEDCHLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSCRDYW 722


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 268/691 (38%), Positives = 404/691 (58%), Gaps = 18/691 (2%)

Query: 13  HALQQHLPSRLHWNIL--KFSSTH--KETQQLHALSVKTNLIYHSG-ISSRLLSLYVDPH 67
           H LQQ+  + L    L   F++T   K+ QQLHA  +  +++ ++  ++++L + Y    
Sbjct: 50  HPLQQYPLTSLQCGALLQSFTNTKSFKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCG 109

Query: 68  INNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPC 127
           +  +  A  IFD I+   S  L+N +I+ Y  N    ++L L+ ++L      DNFT P 
Sbjct: 110 L--MSQAEVIFDGIVLKNSF-LWNFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTYPF 166

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD 187
           V+K    L  ++ G+++H  V   G   D +V +SL++MYAKFG++   R VFD M ++D
Sbjct: 167 VLKACGDLLLVEIGRRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERD 226

Query: 188 LVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFS-WTCLVDGFSKCGKVEIARE------ 240
           L SWN +I GY K  +   A  +FD M    LF+  T L+   S C  ++  +E      
Sbjct: 227 LTSWNTMISGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHG 286

Query: 241 --IFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFM 298
             +   + N N    N++I  Y     +  A  LF+ +  +D ++WNSMI GY  NG   
Sbjct: 287 YAVRNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARNGDAF 346

Query: 299 EALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLI 358
           E+L L   M +    P+  T ++ L A   +A L  G  +HSY+VK GF  + ++GT L+
Sbjct: 347 ESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSIHSYLVKKGFDANTIVGTALV 406

Query: 359 QMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI 418
            MYSKCGS+  +  VF  +  K +  W+AM+ G G+HG   +A+ + + M    + P   
Sbjct: 407 DMYSKCGSLACSRRVFDEMPDKSLVSWSAMVAGYGLHGRGREAISILDGMKANSVIPDNG 466

Query: 419 TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIES 478
            F  +L+ACSHAGLV +G+  F  M  +Y ++P + HY C+VD+L R G+L+EA   I +
Sbjct: 467 VFTSILSACSHAGLVVEGKEIFYKMEKEYNVKPALSHYSCMVDLLGRAGHLDEAYVIIRT 526

Query: 479 MPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKV 538
           M ++P   IW +LL+ +R H N  + E +A  +  + P  +  Y+ LSNIYAA  +WD V
Sbjct: 527 MEIKPTSDIWAALLTASRLHKNIKLAEISAQKVFDMNPKVVSSYICLSNIYAAEKRWDDV 586

Query: 539 SEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHV 598
             VR M++++G +K PG S IE   ++H F+VGDKSH QT++I++KL+E++ +LK AG+ 
Sbjct: 587 ERVRAMVRRKGLKKSPGCSFIELDNMVHRFLVGDKSHQQTEDIYAKLNELKQQLKEAGYK 646

Query: 599 PDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKL 658
           PDT+ V   +E++  KE  L +HSERLAIAF LIN    + IRI KNLRVC DCH+VTKL
Sbjct: 647 PDTSLVFYDVEEEV-KEKMLWDHSERLAIAFALINTGPGTVIRITKNLRVCGDCHTVTKL 705

Query: 659 LSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           +S +  REII+RD  RFHHF  G CSC D+W
Sbjct: 706 ISELTGREIIMRDIHRFHHFIKGFCSCGDYW 736


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 249/718 (34%), Positives = 407/718 (56%), Gaps = 52/718 (7%)

Query: 20  PSRLHW-NILKFSSTH---KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYAR 75
           P+R+ + +ILK  + +   ++ +++H +     +     +++ L+++Y       +  A 
Sbjct: 155 PNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMY--SKCGEISVAC 212

Query: 76  SIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARL 135
            +F ++ +  ++V +  +I+    +++ +EA  L+  +L   + P+  T   ++      
Sbjct: 213 EVFHKMTER-NVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTP 271

Query: 136 GAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLI 195
            A+  G++IH  + + G   D  V ++L++MY K   +   R +FD M  +D++SW+ +I
Sbjct: 272 EALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMI 331

Query: 196 DGYVKKG-----EVEVAMKLFDEMPDRDLFS----------------------------- 221
            GY + G      ++   +L + M    +F                              
Sbjct: 332 AGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELS 391

Query: 222 ----------WTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACE 271
                      T + + ++KCG +  A ++F +M N+N+V+W + ++ Y+K GD+ SA +
Sbjct: 392 KVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEK 451

Query: 272 LFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAV 331
           +F +M  R++++WN MIAGY  NG  ++  ELL +M      P+  T+++ L A   LA 
Sbjct: 452 VFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAG 511

Query: 332 LNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVG 391
           L +G+ +H+  VK G   D V+ T LI MYSKCG +  A TVF  +S +    W AM+ G
Sbjct: 512 LERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAG 571

Query: 392 LGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP 451
            G HG   +A+DLF +M +  + P  IT   V++ACS AGLV +GR  F MM  D+ + P
Sbjct: 572 YGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQEDFKMTP 631

Query: 452 TIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNL 511
             +HYGC+VD+L R G L+EA+  I+SMP  P+  +W +LL   ++H N  + E AA+++
Sbjct: 632 RKQHYGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALLGACKSHNNVQLAERAAHHI 691

Query: 512 IKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVG 571
           +++ P     Y+ LSNIYA AG+WD  ++VR +M  RG +KD G SSIE  G +H FV  
Sbjct: 692 LELEPSYASVYITLSNIYAQAGRWDDSTKVRRVMDDRGLKKDRGESSIEIDGRIHTFVAE 751

Query: 572 DKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGL 631
           D +HP+ D IH++L  +  ++K AG+ PD   VL  ++D  +KE  L +HSE+LAIA+GL
Sbjct: 752 DCAHPEIDAIHAELETLTKEMKEAGYTPDMRFVLHDVDDV-QKEKALCHHSEKLAIAYGL 810

Query: 632 INVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           +   S +PIRI+KNLRVC DCH+ TK +S I  REI+ RD +RFH+F NG+CSC DFW
Sbjct: 811 LKTPSGTPIRIMKNLRVCGDCHTATKFISKIRKREIVARDANRFHYFNNGTCSCGDFW 868



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 134/501 (26%), Positives = 217/501 (43%), Gaps = 90/501 (17%)

Query: 102 RSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLS 161
           R  EA+ L   +  R LL ++ T  CVI+  A+    ++GK +H  + +LG   D ++ +
Sbjct: 36  RLREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGN 95

Query: 162 SLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------P 215
           SL++ Y+KF ++    +VF  M  +D+V+W+ +I  Y        A   F+ M      P
Sbjct: 96  SLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEP 155

Query: 216 DR---------------------------------DLFSWTCLVDGFSKCGKVEIAREIF 242
           +R                                 D+   T L+  +SKCG++ +A E+F
Sbjct: 156 NRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVF 215

Query: 243 YRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALE 302
           ++M  RN+VSW A+I    +                               + +  EA E
Sbjct: 216 HKMTERNVVSWTAIIQANAQ-------------------------------HRKLNEAFE 244

Query: 303 LLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYS 362
           L E ML   + PN  T VS L++      LN+GR +HS+I + G   D ++   LI MY 
Sbjct: 245 LYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYC 304

Query: 363 KCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMA-----TQALDLFNKMCRMGMKPTA 417
           KC S++ A  +F  +SK+ V  W+AMI G    G        +   L  +M R G+ P  
Sbjct: 305 KCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNK 364

Query: 418 ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIE 477
           +TF+ +L AC+  G +  GR+  +  ++  G E        + ++  + G + EA+    
Sbjct: 365 VTFMSILRACTAHGALEQGRQ-IHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFS 423

Query: 478 SMPMRPNFVIWMSLLS-----GARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAA 532
            M  + N V W S LS     G  +   K   E    N++         + ++   YA  
Sbjct: 424 KMANK-NVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVS--------WNLMIAGYAQN 474

Query: 533 GQWDKVSEVREMMKKRGFRKD 553
           G   KV E+   MK  GF+ D
Sbjct: 475 GDIVKVFELLSSMKAEGFQPD 495



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 147/591 (24%), Positives = 251/591 (42%), Gaps = 113/591 (19%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +QL  L V+ + IY   + + L++ Y      ++  A  +F R+     +V ++ +I  Y
Sbjct: 80  KQLDELGVEID-IY---LGNSLINFY--SKFEDVASAEQVFRRMTLR-DVVTWSSMIAAY 132

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
             N    +A   F  + D  + P+  T   ++K       +++G++IH +V  +G   D 
Sbjct: 133 AGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDV 192

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM--- 214
            V ++L++MY+K GEI +   VF  M ++++VSW  +I    +  ++  A +L+++M   
Sbjct: 193 AVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQA 252

Query: 215 ---P---------------------------------DRDLFSWTCLVDGFSKCGKVEIA 238
              P                                 + D+     L+  + KC  V+ A
Sbjct: 253 GISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEA 312

Query: 239 REIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFM 298
           REIF RM  R+++SW+AMI GY ++G        + D E  D                  
Sbjct: 313 REIFDRMSKRDVISWSAMIAGYAQSG--------YKDKESID------------------ 346

Query: 299 EALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLI 358
           E  +LLE M    V PN  T +S L A      L +GR +H+ + K GF +D  L T + 
Sbjct: 347 EVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIF 406

Query: 359 QMYSKCGSIESALTVFRAISKKKVGHWTA------------------------------- 387
            MY+KCGSI  A  VF  ++ K V  WT+                               
Sbjct: 407 NMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNL 466

Query: 388 MIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDY 447
           MI G   +G   +  +L + M   G +P  +T I +L AC     +  G+      +   
Sbjct: 467 MIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLERGKLVHAEAVK-L 525

Query: 448 GIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYA 507
           G+E        L+ +  + G + EA++  + M  R + V W ++L+G   HG+       
Sbjct: 526 GLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNR-DTVAWNAMLAGYGQHGDGLEAVDL 584

Query: 508 ANNLIK--VAPDTIGCYVVLSNIYAAAGQWDKVSEVREM--MKKRGFRKDP 554
              ++K  V+P+ I     L+ + +A  +   V E RE+  M +  F+  P
Sbjct: 585 FKRMLKERVSPNEI----TLTAVISACSRAGLVQEGREIFRMMQEDFKMTP 631



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 94/311 (30%), Positives = 165/311 (53%), Gaps = 10/311 (3%)

Query: 200 KKGEVEVAMKLFDEMPDRDLF----SWTCLVDGFSKCGKVEIAREIFYRMPNR----NLV 251
           K G +  A++L   +  R L     ++ C+++  +K  + E  + +  ++       ++ 
Sbjct: 33  KAGRLREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIY 92

Query: 252 SWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGD 311
             N++IN Y K  DV SA ++F  M +RD++TW+SMIA Y  N    +A +  E M   +
Sbjct: 93  LGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDAN 152

Query: 312 VLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESAL 371
           + PN  T +S L A    ++L KGR +H+ +   G   D  + T LI MYSKCG I  A 
Sbjct: 153 IEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVAC 212

Query: 372 TVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAG 431
            VF  ++++ V  WTA+I     H    +A +L+ +M + G+ P A+TF+ +LN+C+   
Sbjct: 213 EVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPE 272

Query: 432 LVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSL 491
            +N GRR  +  I++ G+E  +     L+ + C+   ++EA+   + M  R + + W ++
Sbjct: 273 ALNRGRR-IHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKR-DVISWSAM 330

Query: 492 LSGARNHGNKD 502
           ++G    G KD
Sbjct: 331 IAGYAQSGYKD 341


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 249/718 (34%), Positives = 410/718 (57%), Gaps = 52/718 (7%)

Query: 20  PSRLHW-NILKFSSTH---KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYAR 75
           P+R+ + +ILK  + +   ++ +++H +   + +     +++ L+++Y       +  A 
Sbjct: 177 PNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMY--SKCGEISLAC 234

Query: 76  SIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARL 135
            IF + ++  ++V +  +I+    +++ +EA  L+  +L   + P+  T   ++      
Sbjct: 235 EIFQK-MKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTP 293

Query: 136 GAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLI 195
            A+  G++IH  + + G   D  V ++L++MY K   I   R  FD M  +D++SW+ +I
Sbjct: 294 EALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMI 353

Query: 196 DGYVKKG-----EVEVAMKLFDEMPDRDLFS----------------------------- 221
            GY + G      ++   +L + M    +F                              
Sbjct: 354 AGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEIS 413

Query: 222 ----------WTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACE 271
                      T + + ++KCG +  A ++F +M N+N+V+W +++  Y+K GD+ SA +
Sbjct: 414 KVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEK 473

Query: 272 LFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAV 331
           +F +M  R++++WN MIAGY  +G   +  ELL +M +    P+  T++S L A   L+ 
Sbjct: 474 VFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSA 533

Query: 332 LNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVG 391
           L +G+ +H+  VK G   D V+ T LI MYSKCG +  A TVF  IS +    W AM+ G
Sbjct: 534 LERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAG 593

Query: 392 LGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP 451
            G HG+  +A+DLF +M +  + P  ITF  V++AC  AGLV +GR  F +M  D+ ++P
Sbjct: 594 YGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQEDFRMKP 653

Query: 452 TIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNL 511
             +HYGC+VD+L R G L+EA+  I+ MP  P+  +W +LL   ++H N  + E+AA+++
Sbjct: 654 GKQHYGCMVDLLGRAGRLQEAEEFIQRMPCEPDISVWHALLGACKSHDNVQLAEWAAHHI 713

Query: 512 IKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVG 571
           +++ P     YV LSNIYA AG+WD  ++VR++M  +G +KD G SSIE  G +H FV  
Sbjct: 714 LRLEPSNASVYVTLSNIYAQAGRWDDSTKVRKVMDDKGLKKDRGESSIEIDGRIHTFVAE 773

Query: 572 DKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGL 631
           D +HP+ D IH++L  +  ++K AG+ PD   VL  + D+ +KE  L +HSE+LAIA+GL
Sbjct: 774 DCAHPEIDSIHAELEMLTKEMKEAGYTPDMRFVLHDV-DEVQKERALCHHSEKLAIAYGL 832

Query: 632 INVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           +     +PIRI+KNLRVC DCH+ TK +S I  REI+ RD +RFH+FKNG+CSC DFW
Sbjct: 833 LKTPPGTPIRIMKNLRVCGDCHTATKFISKIRKREIVARDANRFHYFKNGTCSCGDFW 890



 Score =  189 bits (479), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 147/528 (27%), Positives = 230/528 (43%), Gaps = 92/528 (17%)

Query: 102 RSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLS 161
           R  EA+ L   +  R LL ++ T  C+I+  A+L   ++GK +H  + +LG   D ++ +
Sbjct: 58  RLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGN 117

Query: 162 SLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------P 215
           SL++ Y+KFG++    +VF  M  +D+V+W+ +I  Y        A   F+ M      P
Sbjct: 118 SLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEP 177

Query: 216 DR---------------------------------DLFSWTCLVDGFSKCGKVEIAREIF 242
           +R                                 D+   T L+  +SKCG++ +A EIF
Sbjct: 178 NRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIF 237

Query: 243 YRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALE 302
            +M  RN+VSW A+I    +                               + +  EA E
Sbjct: 238 QKMKERNVVSWTAIIQANAQ-------------------------------HRKLNEAFE 266

Query: 303 LLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYS 362
           L E ML   + PN  T VS L++      LN+GR +HS+I + G   D V+   LI MY 
Sbjct: 267 LYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYC 326

Query: 363 KCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMA-TQALD----LFNKMCRMGMKPTA 417
           KC  I+ A   F  +SK+ V  W+AMI G    G    ++LD    L  +M R G+ P  
Sbjct: 327 KCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNK 386

Query: 418 ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIE 477
           +TF+ +L ACS  G +  GR+  +  I+  G E        + ++  + G + EA+    
Sbjct: 387 VTFMSILKACSVHGALEQGRQ-IHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFS 445

Query: 478 SMPMRPNFVIWMSLLS-----GARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAA 532
            M  + N V W SLL+     G      K   E +  N++         + ++   YA +
Sbjct: 446 KMENK-NVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVS--------WNLMIAGYAQS 496

Query: 533 GQWDKVSEVREMMKKRGFRKDPGS--SSIEHRGVLHEFVVGDKSHPQT 578
           G   KV E+   MK  GF+ D  +  S +E  G L     G   H + 
Sbjct: 497 GDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALERGKLVHAEA 544



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 144/530 (27%), Positives = 236/530 (44%), Gaps = 63/530 (11%)

Query: 87  LVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHG 146
           +V ++ +I  Y  N    +A   F  + D  + P+  T   ++K       +++ ++IH 
Sbjct: 144 VVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLEKAREIHT 203

Query: 147 LVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEV 206
           +V   G   D  V ++L++MY+K GEI L   +F  M ++++VSW  +I    +  ++  
Sbjct: 204 VVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNE 263

Query: 207 AMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNRNL----VSWNAMIN 258
           A +L+++M    +     ++  L++  +    +   R I   +  R L    V  NA+I 
Sbjct: 264 AFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALIT 323

Query: 259 GYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNG-----RFMEALELLETMLIGDVL 313
            Y K   +  A E FD M  RD+I+W++MIAGY  +G        E  +LLE M    V 
Sbjct: 324 MYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVF 383

Query: 314 PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSI------ 367
           PN  T +S L A +    L +GR +H+ I K GF  D  L T +  MY+KCGSI      
Sbjct: 384 PNKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQV 443

Query: 368 -------------------------ESALTVFRAISKKKVGHWTAMIVGLGMHGMATQAL 402
                                     SA  VF  +S + V  W  MI G    G   +  
Sbjct: 444 FSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVF 503

Query: 403 DLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDI 462
           +L + M   G +P  +T I +L AC     +  G+      +   G+E        L+ +
Sbjct: 504 ELLSSMKVEGFQPDRVTIISILEACGALSALERGKLVHAEAVK-LGLESDTVVATSLIGM 562

Query: 463 LCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAAN---NLIK--VAPD 517
             + G + EA++  + +  R + V W ++L+G   HG   IG  A +    ++K  V P+
Sbjct: 563 YSKCGEVTEARTVFDKISNR-DTVAWNAMLAGYGQHG---IGPEAVDLFKRMLKERVPPN 618

Query: 518 TIGCYVVLSNIYAAAGQWDKVSEVREMMK--KRGFRKDPGSSSIEHRGVL 565
            I    V+S    A G+   V E RE+ +  +  FR  PG    +H G +
Sbjct: 619 EITFTAVIS----ACGRAGLVQEGREIFRIMQEDFRMKPGK---QHYGCM 661



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 93/311 (29%), Positives = 166/311 (53%), Gaps = 10/311 (3%)

Query: 200 KKGEVEVAMKLFDEMPDRDLF----SWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS--- 252
           K G ++ A++L   +  R L     ++ C+++  +K  + E  + +  ++    L     
Sbjct: 55  KAGRLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIY 114

Query: 253 -WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGD 311
             N++IN Y K GDV S  ++F  M +RD++TW+SMIA Y  N    +A +  E M   +
Sbjct: 115 LGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDAN 174

Query: 312 VLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESAL 371
           + PN  T +S L A    ++L K R +H+ +  +G   D  + T LI MYSKCG I  A 
Sbjct: 175 IEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLAC 234

Query: 372 TVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAG 431
            +F+ + ++ V  WTA+I     H    +A +L+ KM + G+ P A+TF+ +LN+C+   
Sbjct: 235 EIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPE 294

Query: 432 LVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSL 491
            +N GRR  +  I++ G+E  +     L+ + C+   +++A+ T + M  R + + W ++
Sbjct: 295 ALNRGRR-IHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKR-DVISWSAM 352

Query: 492 LSGARNHGNKD 502
           ++G    G +D
Sbjct: 353 IAGYAQSGYQD 363


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 243/608 (39%), Positives = 371/608 (61%), Gaps = 40/608 (6%)

Query: 121 DNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVF 180
           D F+ P ++K  +++ A   G +IHGL  KLGF  D F+ + L++MYA    I   R +F
Sbjct: 120 DRFSFPSLLKAVSKVSAFNHGLEIHGLASKLGFVDDPFIQTGLIAMYASCRRIMDARLLF 179

Query: 181 DAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL-------------------FS 221
           D M   D V+WN +IDGY + G  + A++LF++M   D+                    S
Sbjct: 180 DKMCHPDAVAWNMIIDGYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLS 239

Query: 222 W--------------------TCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYM 261
           +                    T L++ ++ CG +++AR+I+  + +++L+   AM++GY 
Sbjct: 240 YGRTIHEFVKDNGYAIDSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYA 299

Query: 262 KAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVS 321
           K G V  A  +FD M  RDL+ W++MI+GY  + +  EAL+L + ML    +P+  T++S
Sbjct: 300 KLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITMLS 359

Query: 322 ALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKK 381
            +SA + +  L +  W+H+Y+ ++GF     +   LI MY+KCG++  A  VF  + +K 
Sbjct: 360 VISACSHVGALAQANWIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKAREVFENMPRKN 419

Query: 382 VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFN 441
           V  W++MI    MHG A  A+ LF +M  + ++P  +TFIGVL AC HAGLV +G + F+
Sbjct: 420 VISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPNGVTFIGVLYACGHAGLVEEGEKLFS 479

Query: 442 MMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNK 501
            MIN++GI PT EHYGC+VD+ CR  +L +A   IE+MP  PN +IW SL+S  + HG  
Sbjct: 480 SMINEHGISPTREHYGCMVDLYCRANFLRKAIELIETMPFAPNVIIWGSLMSACQVHGEA 539

Query: 502 DIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEH 561
           ++GE+AA  L+++ PD  G  VVLSNIYA   +W+ V  +R+ M  +G  K+  SS IE 
Sbjct: 540 ELGEFAAKRLLELEPDHDGALVVLSNIYAKEKRWNDVGLIRKSMSYKGISKEKASSRIEI 599

Query: 562 RGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENH 621
              +H F++ D+ H Q+DEI+ KL E+ +KLK  G+ P T+ +L+ +E++ +KE  L  H
Sbjct: 600 NNQVHMFMMADRYHKQSDEIYEKLDEVVSKLKLVGYKPSTSGILIDLEEEDKKELVLW-H 658

Query: 622 SERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNG 681
           SE+LA+ +GLI+ ++ S IRIVKNLR+C DCHS  KL+S +Y  EI+VRD +RFHH   G
Sbjct: 659 SEKLAVCYGLISRRNESCIRIVKNLRICEDCHSFMKLVSKVYQIEIVVRDRTRFHHCSGG 718

Query: 682 SCSCKDFW 689
            CSC+D+W
Sbjct: 719 ICSCRDYW 726


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 253/624 (40%), Positives = 385/624 (61%), Gaps = 11/624 (1%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           A  +FDR+ +   LV +N +I  +  N  + +AL L   + D    PD+ TL  V+  AA
Sbjct: 201 AYKMFDRMPER-DLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAA 259

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
            +G +  GK IHG   + GF     + ++L  MY+K G ++  R +FD MD K +VSWN 
Sbjct: 260 DVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNS 319

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDRDL-FSWTCLVDGFSKC---GKVEIAREIFYRMPNRN 249
           ++DGYV+ GE E A+ +F++M +  +  +   +++    C   G +E  + +   +   N
Sbjct: 320 MMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLN 379

Query: 250 LVS----WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLE 305
           L S     N++I+ Y K   VD A ++F+++  R  ++WN+MI GY  NGR  EAL    
Sbjct: 380 LGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFS 439

Query: 306 TMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCG 365
            M    + P+  T+VS + A+A L+V    +W+H  I+++    +  + T L+ MYSKCG
Sbjct: 440 EMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCG 499

Query: 366 SIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN 425
           +I  A  +F  IS + V  W AMI G G HG+   ALDLF+KM +  ++P  IT++ V++
Sbjct: 500 AIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVIS 559

Query: 426 ACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNF 485
           ACSH+GLV++G R+F  M  DYG+EP+++HYG +VD+L R G ++EA   IE+MP+ P  
Sbjct: 560 ACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGI 619

Query: 486 VIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMM 545
            ++ ++L   + H N ++GE AA  L ++ PD  G +V+L+NIYA+  +W KV+EVR+ M
Sbjct: 620 TVYGAMLGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTM 679

Query: 546 KKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVL 605
           +K+G +K PG S +E R  +H F  G  +HPQ+  I++ L E+  ++KAAG+VPDT  +L
Sbjct: 680 EKKGLKKTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYVPDTNLIL 739

Query: 606 LCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNR 665
              +D +E+   L +HSE+LAIAFGL+N    + I + KNLRVC DCH+ TK +S +  R
Sbjct: 740 DVEDDVQEQ--LLNSHSEKLAIAFGLLNTSPGTTIHVRKNLRVCGDCHNATKYISLVTGR 797

Query: 666 EIIVRDNSRFHHFKNGSCSCKDFW 689
           EIIVRD  RFHHFKNG CSC D+W
Sbjct: 798 EIIVRDMQRFHHFKNGICSCGDYW 821



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 107/371 (28%), Positives = 192/371 (51%), Gaps = 10/371 (2%)

Query: 137 AIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLID 196
           ++KE  QI  LV K G   +    + LVS+++K+G I+   RVF+ +DDK    ++ ++ 
Sbjct: 61  SMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLK 120

Query: 197 GYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNR---- 248
           GY K   +E A+     M   D+    +++T L+        ++  +EI  ++       
Sbjct: 121 GYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAA 180

Query: 249 NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETML 308
           N+ +   ++N Y K   +D A ++FD M  RDL++WN++IAG+  NG   +ALEL+  M 
Sbjct: 181 NVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQ 240

Query: 309 IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIE 368
                P+  TLV+ L A A + +L  G+ +H Y ++ GF     + T L  MYSKCGS+E
Sbjct: 241 DEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVE 300

Query: 369 SALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACS 428
           +A  +F  + +K V  W +M+ G   +G   +A+ +F KM   G+ PT +T +  L+AC+
Sbjct: 301 TARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACA 360

Query: 429 HAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIW 488
             G +  G ++ +  ++   +   I     L+ +  +   ++ A     ++  R + V W
Sbjct: 361 DLGDLERG-KFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTH-VSW 418

Query: 489 MSLLSGARNHG 499
            +++ G   +G
Sbjct: 419 NAMILGYAQNG 429


>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
 gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 938

 Score =  490 bits (1262), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 264/691 (38%), Positives = 404/691 (58%), Gaps = 45/691 (6%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYV 98
           Q+H L VK        + + L+  Y +     L  AR +FD + +  ++V +  +I  Y 
Sbjct: 155 QIHGLIVKMGYAKDLFVQNSLVHFYAE--CGELDSARKVFDEMSER-NVVSWTSMICGYA 211

Query: 99  FNQRSHEALTLFCDLL-DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
               + +A+ LF  ++ D  + P++ T+ CVI   A+L  ++ G++++  +   G   + 
Sbjct: 212 RRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVND 271

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM--- 214
            ++S+LV MY K   ID+ +R+FD     +L   N +   YV++G    A+ +F+ M   
Sbjct: 272 LMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDS 331

Query: 215 ---PDR-----------------------------DLFSW----TCLVDGFSKCGKVEIA 238
              PDR                                SW      L+D + KC + + A
Sbjct: 332 GVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTA 391

Query: 239 REIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFM 298
             IF RM N+ +V+WN+++ GY++ G+VD+A E F+ M  +++++WN++I+G      F 
Sbjct: 392 FRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFE 451

Query: 299 EALELLETMLIGDVLPNDA-TLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLL 357
           EA+E+  +M   + +  D  T++S  SA   L  L+  +W++ YI KNG  +D  LGT L
Sbjct: 452 EAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTL 511

Query: 358 IQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA 417
           + M+S+CG  ESA+++F +++ + V  WTA I  + M G A +A++LF+ M   G+KP  
Sbjct: 512 VDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDG 571

Query: 418 ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIE 477
           + F+G L ACSH GLV  G+  F  M+  +G+ P   HYGC+VD+L R G LEEA   IE
Sbjct: 572 VAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIE 631

Query: 478 SMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDK 537
            MPM PN VIW SLL+  R  GN ++  YAA  +  +AP+  G YV+LSN+YA+AG+W+ 
Sbjct: 632 DMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWND 691

Query: 538 VSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGH 597
           +++VR  MK++G RK PG+SSI+ RG  HEF  GD+SHP+   I + L E+  +    GH
Sbjct: 692 MAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGH 751

Query: 598 VPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTK 657
           VPD + VL+ + D+KEK   L  HSE+LA+A+GLI+    + IRIVKNLRVC+DCHS  K
Sbjct: 752 VPDLSNVLMDV-DEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAK 810

Query: 658 LLSGIYNREIIVRDNSRFHHFKNGSCSCKDF 688
             S +YNREII+RDN+RFH+ + G CSC DF
Sbjct: 811 FASKVYNREIILRDNNRFHYIRQGKCSCGDF 841



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 127/454 (27%), Positives = 218/454 (48%), Gaps = 42/454 (9%)

Query: 70  NLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVI 129
           +L +A+ +F+    + +  +YN LI+ Y  +   +EA+ LF  +++  + PD +T P  +
Sbjct: 82  SLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGL 141

Query: 130 KGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLV 189
              A+  A   G QIHGL+ K+G+  D FV +SLV  YA+ GE+D  R+VFD M ++++V
Sbjct: 142 SACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVV 201

Query: 190 SWNCLIDGYVKKGEVEVAMKLF-----DEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYR 244
           SW  +I GY ++   + A+ LF     DE    +  +  C++   +K   +E   +++  
Sbjct: 202 SWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAF 261

Query: 245 MPNR----NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEA 300
           + N     N +  +A+++ YMK   +D A  LFD+    +L   N+M + Y   G   EA
Sbjct: 262 IRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREA 321

Query: 301 LELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQM 360
           L +   M+   V P+  +++SA+S+ + L  +  G+  H Y+++NGF     +   LI M
Sbjct: 322 LGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDM 381

Query: 361 YSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKM------------ 408
           Y KC   ++A  +F  +S K V  W +++ G   +G    A + F  M            
Sbjct: 382 YMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTII 441

Query: 409 ----------------CRM----GMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYG 448
                           C M    G+    +T + + +AC H G + D  ++    I   G
Sbjct: 442 SGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGAL-DLAKWIYYYIEKNG 500

Query: 449 IEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMR 482
           I+  +     LVD+  R G  E A S   S+  R
Sbjct: 501 IQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNR 534



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 103/406 (25%), Positives = 181/406 (44%), Gaps = 54/406 (13%)

Query: 137 AIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFG---EIDLGRRVFDAMDD-KDLVSWN 192
            I E K  H  + K G   D   ++ LV+   + G    +   + VF+  +       +N
Sbjct: 44  TIDELKMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYN 103

Query: 193 CLIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKCGK-------VEIAR 239
            LI GY   G    A+ LF  M      PD+  F +     G S C K       ++I  
Sbjct: 104 SLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPF-----GLSACAKSRAKGNGIQIHG 158

Query: 240 EIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFME 299
            I      ++L   N++++ Y + G++DSA ++FD+M  R++++W SMI GY       +
Sbjct: 159 LIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKD 218

Query: 300 ALELLETMLIGD-VLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLI 358
           A++L   M+  + V PN  T+V  +SA A L  L  G  ++++I  +G  V+ ++ + L+
Sbjct: 219 AVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALV 278

Query: 359 QMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI 418
            MY KC +I+ A  +F       +    AM       G+  +AL +FN M   G++P  I
Sbjct: 279 DMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRI 338

Query: 419 TFIGVLNACS-----------HAGLVNDGRRYFNMMIN-------------------DYG 448
           + +  +++CS           H  ++ +G   ++ + N                   D  
Sbjct: 339 SMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRM 398

Query: 449 IEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG 494
              T+  +  +V      G ++ A  T E+MP + N V W +++SG
Sbjct: 399 SNKTVVTWNSIVAGYVENGEVDAAWETFETMPEK-NIVSWNTIISG 443


>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 725

 Score =  489 bits (1259), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 262/668 (39%), Positives = 387/668 (57%), Gaps = 58/668 (8%)

Query: 73  YARSIFDRILQHPSLVLYNLLIKCYVFNQRSHE--ALTLFCDLL----DRFLLPDNFTLP 126
           YA ++F  I   P  +++N L++      RS E  A  LF   +     RF   D  + P
Sbjct: 65  YALNLFSSISPLPESIVFNSLLRDL---SRSGEPRATILFYQRIRHVGGRF---DRISFP 118

Query: 127 CVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK 186
            ++K  +++ A+ EG ++HG  FK+    D FV + L+ MYA  G I+  R VFD M  +
Sbjct: 119 PILKAVSKVSALFEGMELHGFAFKIATLSDPFVETGLMDMYAACGRINYARNVFDEMSQR 178

Query: 187 DLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFS------------------------- 221
           D+V+WN +I+ Y + G ++ A KLF+EM D ++                           
Sbjct: 179 DVVTWNTMIERYCRFGLLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIY 238

Query: 222 --------------WTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVD 267
                          T LV  ++  G +++A E F +M  RNL    AM++GY KAG +D
Sbjct: 239 DFLIENDVRMDTHLLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLD 298

Query: 268 SACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVA 327
            A  +FD  E++DL+ W +MI+ Y  +    EAL + E M    + P+  T++S +SA  
Sbjct: 299 DARVIFDQTEMKDLVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVISACV 358

Query: 328 GLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTA 387
            L  L+K +W+H Y   NG      +   LI MY+KCG +++A  VF  +  + V  W++
Sbjct: 359 NLGTLDKAKWVHRYTHLNGLESVLPIDNALINMYAKCGGLDAARDVFEKMPTRNVVSWSS 418

Query: 388 MIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDY 447
           MI    MHG A+ +L LF +M +  ++P  +TF+GVL  CSH+GLV +G++ F  M ++Y
Sbjct: 419 MINAFAMHGEASDSLSLFAQMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEY 478

Query: 448 GIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYA 507
            I P IEHYGC+VD+  R   L EA   IESMPM PN VIW SL+S  R HG  ++GE A
Sbjct: 479 NITPKIEHYGCMVDLFGRANLLREALEVIESMPMAPNVVIWGSLMSACRVHGELELGELA 538

Query: 508 ANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHE 567
           A  ++K+ PD  G  V++SNIYA   +WD V  +R +M+K+   K+ G S I+  G  HE
Sbjct: 539 AKRILKLEPDHDGALVLMSNIYAREYRWDYVRIIRWIMEKKKVFKEKGLSRIDLNGKSHE 598

Query: 568 FVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAI 627
           F++GDK H Q++EI++KL E+ +KLK AG+VPD   VL+ +E++++K+  L  HSE+LA+
Sbjct: 599 FLIGDKRHKQSNEIYTKLYEVVSKLKLAGYVPDGGSVLVDVEEEEKKDLVLW-HSEKLAL 657

Query: 628 AFGLINVKSRSP------IRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNG 681
            FGL+N +          IRIVKNLRVC DCH+  KL+S +Y  EIIVRD +RFH +K+G
Sbjct: 658 CFGLMNKEKEEEKGSCGVIRIVKNLRVCEDCHAFFKLVSKVYELEIIVRDRTRFHRYKDG 717

Query: 682 SCSCKDFW 689
            CSC+D+W
Sbjct: 718 LCSCRDYW 725


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 253/675 (37%), Positives = 402/675 (59%), Gaps = 15/675 (2%)

Query: 27  ILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPS 86
           +L+ +       QLHA +++  L+     +S  L ++       +  A   FD  ++H  
Sbjct: 77  LLRAAQGPGTAAQLHACALRLGLLRGDAFASGAL-VHAYLRFGRVRDAYRAFDE-MRHRD 134

Query: 87  LVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHG 146
           +  +N ++     N R+ EA+ LF  ++   +  D  T+  V+     LG       +H 
Sbjct: 135 VPAWNAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDRALALAMHL 194

Query: 147 LVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEV 206
              K G   + FV ++++ +Y K G ++  R+VFD M  +DLV+WN +I G+ + G+V  
Sbjct: 195 YAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVAS 254

Query: 207 AMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREIFYRMPNR-----NLVSWNAMI 257
           A+++F  M D     D+ +   L    ++CG +   R +   M  R     ++++ NA++
Sbjct: 255 AVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIV 314

Query: 258 NGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL-PND 316
           + Y K   +++A  +FD M +RD ++WN++I GY  NG   EA+ + + M   + L P  
Sbjct: 315 DMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQ 374

Query: 317 ATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRA 376
            T VS L A + L  L +G  MH+  +K G  +D  +GT +I +Y+KCG ++ A+ +F  
Sbjct: 375 GTFVSVLPAYSHLGALQQGTRMHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQ 434

Query: 377 ISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDG 436
             ++  G W A+I G+G+HG   +AL LF++M + G+ P  +TF+ +L ACSHAGLV+ G
Sbjct: 435 TPRRSTGPWNAVISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAACSHAGLVDQG 494

Query: 437 RRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGAR 496
           R +FNMM   YGI+P  +HY C+VD+  R G L++A   I +MP++P+  IW +LL   R
Sbjct: 495 RNFFNMMQTAYGIKPIAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPDSAIWGALLGACR 554

Query: 497 NHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGS 556
            HGN ++G+ A+ NL ++ P  +G YV++SN+YA  G+WD V EVR +++++  +K PG 
Sbjct: 555 IHGNVEMGKVASQNLFELDPKNVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGW 614

Query: 557 SSIEHRGVLHEFVVGDKS--HPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEK 614
           SSIE +  ++ F  G++   HPQ +EI  +L ++  K+++ G+VPD + VL  +E + EK
Sbjct: 615 SSIEVKRSVNVFYSGNQMNIHPQHEEIQRELLDLLAKIRSLGYVPDYSFVLQDVE-EDEK 673

Query: 615 EAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSR 674
           E  L NHSERLAIAFG+IN   R+P+ I KNLRVC DCH+ TK +S I  REIIVRD++R
Sbjct: 674 EQILNNHSERLAIAFGIINTPPRTPLHIYKNLRVCGDCHNATKYISKITEREIIVRDSNR 733

Query: 675 FHHFKNGSCSCKDFW 689
           FHHFK+G CSC DFW
Sbjct: 734 FHHFKDGYCSCGDFW 748


>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 640

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 259/604 (42%), Positives = 359/604 (59%), Gaps = 43/604 (7%)

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYA--KFGEIDLGRRVFDAMDD 185
           +++  +    +K+  QIH      G   D FV S ++S  A    G I   R +F  +  
Sbjct: 38  ILRHLSSCKTLKDLTQIHAQTITTGIFSDNFVASRILSFAALSPHGSIPYARFLFYRIRK 97

Query: 186 KDLVSWNCLIDGYVKKGEVEVAMKLFDEM-------PDRDLFS----------------- 221
            D+   N LI  Y        A+  + EM       PD   F                  
Sbjct: 98  PDIFIANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSLRLGEA 157

Query: 222 ---------WTC-------LVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGD 265
                    W+        LV  ++ CG +E A  +F R P  +  SWN MI GY+K G 
Sbjct: 158 IHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASWNIMIGGYLKCGV 217

Query: 266 VDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSA 325
             SA  +F+ M  RD+++W+ MI GY    RF E L L + M+   + PN++ LV+ALSA
Sbjct: 218 FKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVLVNALSA 277

Query: 326 VAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHW 385
            A L  + +G+W+  Y+ +    +   LGT LI MYSKCGS+E AL VF  + +K V  W
Sbjct: 278 CAHLGAMEQGQWIERYMERKNVRLTVRLGTALIDMYSKCGSVERALEVFHKMKEKNVLAW 337

Query: 386 TAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN 445
           +AMI GL ++G    AL+LF++M   G+KP  +TFIG+LNACSH+ LV++G  +F+ M +
Sbjct: 338 SAMINGLAINGQGKDALNLFSQMEMQGVKPNEVTFIGILNACSHSKLVDEGCSFFHSMTS 397

Query: 446 DYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGE 505
            YG++P   H+ C+VD+  R G L++A++ I+SMP +PN  IW +LL+  R HG+ ++GE
Sbjct: 398 IYGLKPNAHHHCCMVDLYGRAGMLDQAQTVIKSMPFKPNSAIWGALLNACRIHGDTELGE 457

Query: 506 YAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVL 565
                L+++ P+  G YV+LSNIYAA G+WD+V+E+R MM++R   K PG S I+    +
Sbjct: 458 QVGKRLLELDPNHGGRYVLLSNIYAACGRWDRVAELRRMMRERQVSKTPGCSFIDLGDTI 517

Query: 566 HEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERL 625
           HEFV GD SHPQ + I++KL EM  +LKAAG+ PDT QVLL + D++EKE  L +HSE+L
Sbjct: 518 HEFVAGDSSHPQLEMIYAKLGEMSQELKAAGYKPDTGQVLLDM-DEEEKETALCHHSEKL 576

Query: 626 AIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSC 685
           AIAFGLI     + IRI KNLRVC DCHS TKL+S IYNREIIVRD  RFHHF++GSCSC
Sbjct: 577 AIAFGLIKTDPGTTIRITKNLRVCADCHSATKLISKIYNREIIVRDRCRFHHFRDGSCSC 636

Query: 686 KDFW 689
            DFW
Sbjct: 637 MDFW 640



 Score =  179 bits (453), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 114/412 (27%), Positives = 208/412 (50%), Gaps = 45/412 (10%)

Query: 28  LKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLY-VDPHINNLHYARSIFDRILQHPS 86
           L    T K+  Q+HA ++ T +   + ++SR+LS   + PH  ++ YAR +F RI + P 
Sbjct: 42  LSSCKTLKDLTQIHAQTITTGIFSDNFVASRILSFAALSPH-GSIPYARFLFYRI-RKPD 99

Query: 87  LVLYNLLIKCYVFNQRSHEALTLFCDLLDR-FLLPDNFTLPCVIKGAARLGAIKEGKQIH 145
           + + N LI+ Y F+    +A+  + ++ +   + PD  T P ++K  + + +++ G+ IH
Sbjct: 100 IFIANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSLRLGEAIH 159

Query: 146 GLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVE 205
             VFKLG+  +  V + LV MYA  G I+    VFD   + D  SWN +I GY+K G  +
Sbjct: 160 SHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASWNIMIGGYLKCGVFK 219

Query: 206 VAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM------PNRNLV-------- 251
            A ++F+ MPDRD+ SW+ +++G+ +  + +    +F  M      PN +++        
Sbjct: 220 SARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVLVNALSACA 279

Query: 252 --------SW-----------------NAMINGYMKAGDVDSACELFDDMEIRDLITWNS 286
                    W                  A+I+ Y K G V+ A E+F  M+ ++++ W++
Sbjct: 280 HLGAMEQGQWIERYMERKNVRLTVRLGTALIDMYSKCGSVERALEVFHKMKEKNVLAWSA 339

Query: 287 MIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKG-RWMHSYIVKN 345
           MI G  +NG+  +AL L   M +  V PN+ T +  L+A +   ++++G  + HS     
Sbjct: 340 MINGLAINGQGKDALNLFSQMEMQGVKPNEVTFIGILNACSHSKLVDEGCSFFHSMTSIY 399

Query: 346 GFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS-KKKVGHWTAMIVGLGMHG 396
           G   +      ++ +Y + G ++ A TV +++  K     W A++    +HG
Sbjct: 400 GLKPNAHHHCCMVDLYGRAGMLDQAQTVIKSMPFKPNSAIWGALLNACRIHG 451


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 276/666 (41%), Positives = 396/666 (59%), Gaps = 12/666 (1%)

Query: 32  STHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYN 91
           S  K  + +HA  ++  L   + + +++L    +    N +Y+  I D+  + P++ L+N
Sbjct: 21  SCLKHLKHIHAALLRLGLDEDTYLLNKVLRFSFN--FGNTNYSFRILDQT-KEPNIFLFN 77

Query: 92  LLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKL 151
            +I+  V N    E++ ++  +    L PD+FT P V+K  AR+   + G ++H LV K 
Sbjct: 78  TMIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKA 137

Query: 152 GFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLF 211
           G   D FV  SL+++Y K G ID   +VFD + DK+  SW   I GYV  G+   A+ +F
Sbjct: 138 GCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMF 197

Query: 212 D---EMPDR-DLFSWTCLVDGFSKCGKVEIAREI-FYRMPN---RNLVSWNAMINGYMKA 263
               EM  R D FS   ++    + G +     I  Y   N   RN+    A+++ Y K 
Sbjct: 198 RRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKC 257

Query: 264 GDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSAL 323
           G+++ A  +FD M  +++++W+SMI GY  NG   EAL+L   ML   + P+   +V  L
Sbjct: 258 GNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVL 317

Query: 324 SAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVG 383
            + A L  L  G W  + I  N F+ + VLGT LI MY+KCG ++ A  VFR + KK   
Sbjct: 318 CSCARLGALELGDWASNLINGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGMRKKDRV 377

Query: 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMM 443
            W A I GL M G    AL LF +M + G+KP   TF+G+L AC+HAGLV +GRRYFN M
Sbjct: 378 VWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCACTHAGLVEEGRRYFNSM 437

Query: 444 INDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDI 503
              + + P IEHYGC+VD+L R G L+EA   I+SMPM  N ++W +LL G R H +  +
Sbjct: 438 ECVFTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPMEANAIVWGALLGGCRLHRDTQL 497

Query: 504 GEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRG 563
            E     LI + P   G YV+LSNIYAA+ +W++ +++R +M +RG +K PG S IE  G
Sbjct: 498 VEVVLKKLIALEPWHSGNYVLLSNIYAASHKWEEAAKIRSIMSERGVKKIPGYSWIEVDG 557

Query: 564 VLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSE 623
           V+H+F+VGD SHP +++I++KL E+   LKAAG+VP T  VL  IE++ EKE  +  HSE
Sbjct: 558 VVHQFLVGDTSHPLSEKIYAKLGELAKDLKAAGYVPTTDHVLFDIEEE-EKEHFIGCHSE 616

Query: 624 RLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSC 683
           +LA+AFGLI+      I +VKNLRVC DCH   K +S I  REIIVRDN+RFH F +G C
Sbjct: 617 KLAVAFGLISTAPNDKILVVKNLRVCGDCHEAIKHISRIAGREIIVRDNNRFHCFTDGLC 676

Query: 684 SCKDFW 689
           SCKD+W
Sbjct: 677 SCKDYW 682



 Score = 47.0 bits (110), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 32/169 (18%), Positives = 79/169 (46%), Gaps = 2/169 (1%)

Query: 326 VAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHW 385
           + G + L   + +H+ +++ G   D  L   +++     G+   +  +     +  +  +
Sbjct: 17  IQGFSCLKHLKHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLF 76

Query: 386 TAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN 445
             MI GL ++    +++++++ M + G+ P + TF  VL AC+       G +  ++++ 
Sbjct: 77  NTMIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVK 136

Query: 446 DYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG 494
             G E        L+++  + G+++ A    + +P + NF  W + +SG
Sbjct: 137 -AGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDK-NFASWTATISG 183


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 258/680 (37%), Positives = 389/680 (57%), Gaps = 27/680 (3%)

Query: 20  PSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFD 79
           P+ L+W            +++H   ++  L  ++ + + L+S+Y      ++  AR +FD
Sbjct: 158 PAALNWG-----------REVHVRVMEAGLANNATVGNALISMYAK--CGSVRDARRVFD 204

Query: 80  RILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIK 139
            +      V +  L   Y  +  + E+L  +  +L   + P   T   V+     L A++
Sbjct: 205 AMASRDE-VSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALE 263

Query: 140 EGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYV 199
           +GKQIH  + +     D  V ++L  MY K G +   R VF+ + ++D+++WN +I G V
Sbjct: 264 KGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLV 323

Query: 200 KKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS- 252
             G++E A  +F  M      PDR   ++  ++   ++ G +   +EI  R     LVS 
Sbjct: 324 DSGQLEEAHGMFHRMLKECVAPDR--VTYLAILSACARPGGLACGKEIHARAVKDGLVSD 381

Query: 253 ---WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLI 309
               NA+IN Y KAG +  A ++FD M  RD+++W +++ GY   G+ +E+    + ML 
Sbjct: 382 VRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQ 441

Query: 310 GDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIES 369
             V  N  T +  L A +    L  G+ +H+ +VK G   D  +   L+ MY KCGS+E 
Sbjct: 442 QGVEANKITYMCVLKACSNPVALKWGKEIHAEVVKAGIFADLAVANALMSMYFKCGSVED 501

Query: 370 ALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSH 429
           A+ V   +S + V  W  +I GL  +G   +AL  F  M    M+P A TF+ V++AC  
Sbjct: 502 AIRVSEGMSTRDVVTWNTLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSACRV 561

Query: 430 AGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWM 489
             LV +GRR F  M  DYGI PT +HY C+VDIL R G+L EA+  I +MP +P+  +W 
Sbjct: 562 RNLVEEGRRQFASMRKDYGIVPTEKHYACMVDILARAGHLGEAEDVILTMPFKPSAAMWG 621

Query: 490 SLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRG 549
           +LL+  R HGN +IGE AA   +K+ P   G YV LS IYAAAG W  V+++R++MK+RG
Sbjct: 622 ALLAACRAHGNVEIGEQAAEQCLKLEPQNAGTYVSLSFIYAAAGMWRDVAKLRKLMKERG 681

Query: 550 FRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIE 609
            +K+PG S IE  G +H FV GD+SHP+T+EI+S+L  +  ++K+ G+VPDT  V+  + 
Sbjct: 682 VKKEPGRSWIEVAGEVHSFVAGDQSHPRTEEIYSELEALTKQIKSLGYVPDTRFVMHDL- 740

Query: 610 DQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIV 669
           DQ+ KE  + +HSE+LAIA+GLI+    +PIR+ KNLRVC DCH+ TK +S I  REII 
Sbjct: 741 DQEGKERAVCHHSEKLAIAYGLISTPPETPIRVSKNLRVCTDCHTATKFISKITGREIIA 800

Query: 670 RDNSRFHHFKNGSCSCKDFW 689
           RD  RFHHFKNG CSC D+W
Sbjct: 801 RDAHRFHHFKNGECSCGDYW 820



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 108/388 (27%), Positives = 198/388 (51%), Gaps = 10/388 (2%)

Query: 121 DNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVF 180
           D++    +++   +   +  GKQ+H  + + G   + +++++L+ +Y   G ++  RR+F
Sbjct: 43  DSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEARRLF 102

Query: 181 DAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP----DRDLFSWTCLVDGFSKCGKVE 236
           D   +K +VSWN +I GY  +G  + A  LF  M     + D F++  ++   S    + 
Sbjct: 103 DKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALN 162

Query: 237 IAREIFYRMPNRNLVS----WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYE 292
             RE+  R+    L +     NA+I+ Y K G V  A  +FD M  RD ++W ++   Y 
Sbjct: 163 WGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYA 222

Query: 293 LNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV 352
            +G   E+L+    ML   V P+  T ++ LSA   LA L KG+ +H+ IV++    D  
Sbjct: 223 ESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVR 282

Query: 353 LGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG 412
           + T L +MY KCG+++ A  VF  +  + V  W  MI GL   G   +A  +F++M +  
Sbjct: 283 VSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKEC 342

Query: 413 MKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEA 472
           + P  +T++ +L+AC+  G +  G+      + D G+   +     L+++  + G +++A
Sbjct: 343 VAPDRVTYLAILSACARPGGLACGKEIHARAVKD-GLVSDVRFGNALINMYSKAGSMKDA 401

Query: 473 KSTIESMPMRPNFVIWMSLLSGARNHGN 500
           +   + MP R + V W +L+ G  + G 
Sbjct: 402 RQVFDRMPKR-DVVSWTALVGGYADCGQ 428



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 155/323 (47%), Gaps = 24/323 (7%)

Query: 218 DLFSWTCLVDGFSKCGKVEIAREI------FYRMPNRNLVSWNAMINGYMKAGDVDSACE 271
           D + +  L+    K   + + +++      F   PN  ++  N ++  Y+  G V+ A  
Sbjct: 43  DSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYII--NTLLKLYVHCGSVNEARR 100

Query: 272 LFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAV 331
           LFD    + +++WN MI+GY   G   EA  L   M    + P+  T VS LSA +  A 
Sbjct: 101 LFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAA 160

Query: 332 LNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVG 391
           LN GR +H  +++ G   +  +G  LI MY+KCGS+  A  VF A++ +    WT +   
Sbjct: 161 LNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGA 220

Query: 392 LGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP 451
               G A ++L  ++ M + G++P+ IT++ VL+AC     +  G++    ++       
Sbjct: 221 YAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVES----- 275

Query: 452 TIEHYG------CLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGE 505
             EH+        L  +  + G +++A+   E +P R + + W +++ G  + G  +   
Sbjct: 276 --EHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNR-DVIAWNTMIGGLVDSGQLEEAH 332

Query: 506 YAANNLIK--VAPDTIGCYVVLS 526
              + ++K  VAPD +    +LS
Sbjct: 333 GMFHRMLKECVAPDRVTYLAILS 355


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 252/624 (40%), Positives = 383/624 (61%), Gaps = 11/624 (1%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           A  +FDR+ +   LV +N +I  +  N  + +AL L   + D    PD+ TL  V+  AA
Sbjct: 201 AYKMFDRMPER-DLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAA 259

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
            +G +  GK IHG   + GF     + ++L  MY+K G ++  R +FD MD K +VSWN 
Sbjct: 260 DVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNS 319

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDRDL-FSWTCLVDGFSKC---GKVEIAREIFYRMPNRN 249
           ++DGYV+ GE E A+ +F++M +  +  +   +++    C   G +E  + +   +   N
Sbjct: 320 MMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLN 379

Query: 250 LVS----WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLE 305
           L S     N++I+ Y K   VD A ++F+++  R  ++WN+MI GY  NGR  EAL    
Sbjct: 380 LGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFS 439

Query: 306 TMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCG 365
            M    + P+  T+VS + A+A L+V    +W+H  I+++    +  + T L+ MYSKCG
Sbjct: 440 EMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCG 499

Query: 366 SIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN 425
           +I  A  +F  IS + V  W AMI G G HG+   ALDLF+KM +  ++P  IT++ V++
Sbjct: 500 AIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVIS 559

Query: 426 ACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNF 485
           ACSH+GLV++G R+F  M  DYG+EP+++HYG +VD+L R G ++EA   IE+MP+ P  
Sbjct: 560 ACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGI 619

Query: 486 VIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMM 545
            ++ +     + H N ++GE AA  L ++ PD  G +V+L+NIYA+  +W KV+EVR+ M
Sbjct: 620 TVYGAXXGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTM 679

Query: 546 KKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVL 605
           +K+G +K PG S +E R  +H F  G  +HPQ+  I++ L E+  ++KAAG+VPDT  +L
Sbjct: 680 EKKGLKKTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYVPDTNLIL 739

Query: 606 LCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNR 665
              +D +E+   L +HSE+LAIAFGL+N    + I + KNLRVC DCH+ TK +S +  R
Sbjct: 740 DVEDDVQEQ--LLNSHSEKLAIAFGLLNTSPGTTIHVRKNLRVCGDCHNATKYISLVTGR 797

Query: 666 EIIVRDNSRFHHFKNGSCSCKDFW 689
           EIIVRD  RFHHFKNG CSC D+W
Sbjct: 798 EIIVRDMQRFHHFKNGICSCGDYW 821



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 107/371 (28%), Positives = 192/371 (51%), Gaps = 10/371 (2%)

Query: 137 AIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLID 196
           ++KE  QI  LV K G   +    + LVS+++K+G I+   RVF+ +DDK    ++ ++ 
Sbjct: 61  SMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLK 120

Query: 197 GYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNR---- 248
           GY K   +E A+     M   D+    +++T L+        ++  +EI  ++       
Sbjct: 121 GYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAA 180

Query: 249 NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETML 308
           N+ +   ++N Y K   +D A ++FD M  RDL++WN++IAG+  NG   +ALEL+  M 
Sbjct: 181 NVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQ 240

Query: 309 IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIE 368
                P+  TLV+ L A A + +L  G+ +H Y ++ GF     + T L  MYSKCGS+E
Sbjct: 241 DEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVE 300

Query: 369 SALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACS 428
           +A  +F  + +K V  W +M+ G   +G   +A+ +F KM   G+ PT +T +  L+AC+
Sbjct: 301 TARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACA 360

Query: 429 HAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIW 488
             G +  G ++ +  ++   +   I     L+ +  +   ++ A     ++  R + V W
Sbjct: 361 DLGDLERG-KFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTH-VSW 418

Query: 489 MSLLSGARNHG 499
            +++ G   +G
Sbjct: 419 NAMILGYAQNG 429


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 255/664 (38%), Positives = 402/664 (60%), Gaps = 13/664 (1%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           ++ +++HA  +K+ +  +  + + LLS+Y      +L  AR +FD I +  ++V +  +I
Sbjct: 64  EQGREVHAAILKSGIQPNRYLENTLLSMYAK--CGSLTDARRVFDSI-RDRNIVSWTAMI 120

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
           + +V   ++ EA   +  +      PD  T   ++        ++ G+++H  + + G  
Sbjct: 121 EAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLE 180

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
            +  V +SLV MYAK G+I   R +FD + +K++V+W  LI GY ++G+V+VA++L + M
Sbjct: 181 LEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETM 240

Query: 215 PDRDL----FSWTCLVDGFSKCGKVE----IAREIFYRMPNRNLVSWNAMINGYMKAGDV 266
              ++     ++  ++ G +    +E    + R I      R L   N++I  Y K G +
Sbjct: 241 QQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGL 300

Query: 267 DSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326
           + A +LF D+  RD++TW +M+ GY   G   EA+ L   M    + P+  T  S L++ 
Sbjct: 301 EEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSC 360

Query: 327 AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWT 386
           +  A L +G+ +H  +V  G+ +D  L + L+ MY+KCGS++ A  VF  +S++ V  WT
Sbjct: 361 SSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWT 420

Query: 387 AMIVGL-GMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN 445
           A+I G    HG   +AL+ F++M + G+KP  +TF  VL+AC+H GLV +GR++F  M  
Sbjct: 421 AIITGCCAQHGRCREALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYL 480

Query: 446 DYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGE 505
           DYGI+P +EHY C VD+L R G+LEEA++ I SMP  P   +W +LLS  R H + + GE
Sbjct: 481 DYGIKPMVEHYSCFVDLLGRAGHLEEAENVILSMPFIPGPSVWGALLSACRVHSDVERGE 540

Query: 506 YAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVL 565
            AA N++K+ PD  G YV LS+IYAAAG+++   +VR++M+KR   K+PG S IE  G +
Sbjct: 541 RAAENVLKLDPDDDGAYVALSSIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKV 600

Query: 566 HEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERL 625
           H F V DKSHP++++I+ +L ++  ++K  G+VPDT  VL  + D+++KE  L +HSERL
Sbjct: 601 HVFHVEDKSHPESEQIYVELGKLTEQIKEMGYVPDTRFVLHDV-DEEQKERILFSHSERL 659

Query: 626 AIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSC 685
           AI +GL+      PIRIVKNLRVC DCH+ TK +S +  REII RD  RFHHF +G CSC
Sbjct: 660 AITYGLMKTPPGMPIRIVKNLRVCGDCHTATKFISKVVGREIIARDAQRFHHFADGVCSC 719

Query: 686 KDFW 689
            DFW
Sbjct: 720 GDFW 723



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 112/242 (46%), Gaps = 4/242 (1%)

Query: 294 NGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVL 353
            GR  EAL ++ TM++             L   A L  L +GR +H+ I+K+G   +  L
Sbjct: 25  TGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYL 84

Query: 354 GTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGM 413
              L+ MY+KCGS+  A  VF +I  + +  WTAMI          +A   +  M   G 
Sbjct: 85  ENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGC 144

Query: 414 KPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAK 473
           KP  +TF+ +LNA ++  L+  G++  +M I + G+E        LV +  + G + +A+
Sbjct: 145 KPDKVTFVSLLNAFTNPELLQLGQK-VHMEIVEAGLELEPRVGTSLVGMYAKCGDISKAR 203

Query: 474 STIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNL--IKVAPDTIGCYVVLSNIYAA 531
              + +P + N V W  L++G    G  D+       +   +VAP+ I    +L      
Sbjct: 204 VIFDRLPEK-NVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTP 262

Query: 532 AG 533
           A 
Sbjct: 263 AA 264


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 260/668 (38%), Positives = 397/668 (59%), Gaps = 14/668 (2%)

Query: 31   SSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLY 90
            SS + + + +H   +++ +  +  +++ L+++Y      +L  A+++F+   Q   ++ +
Sbjct: 444  SSAYADGKMIHEDILRSGIKSNGHLANALMNMY--RRCGSLMEAQNVFEGT-QARDVISW 500

Query: 91   NLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFK 150
            N +I  +  +     A  LF ++ +  L PDN T   V+ G     A++ GKQIHG + +
Sbjct: 501  NSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITE 560

Query: 151  LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
             G   D  + ++L++MY + G +   R VF ++  +D++SW  +I G   +GE   A++L
Sbjct: 561  SGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIEL 620

Query: 211  FDEM------PDRDLFSWTCLVDGFSKC---GKVEIAREIFYRMPNRNLVSWNAMINGYM 261
            F +M      P +  FS    V   S C   GK  IA  I       +    NA+I+ Y 
Sbjct: 621  FWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAY-ILNSGYELDTGVGNALISAYS 679

Query: 262  KAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVS 321
            K+G +  A E+FD M  RD+++WN +IAGY  NG    A+E    M   DV+PN  + VS
Sbjct: 680  KSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVS 739

Query: 322  ALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKK 381
             L+A +  + L +G+ +H+ IVK     D  +G  LI MY+KCGS   A  VF  I +K 
Sbjct: 740  LLNACSSFSALEEGKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKN 799

Query: 382  VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFN 441
            V  W AMI     HG+A++AL  FN M + G+KP   TF  +L+AC+HAGLV +G + F+
Sbjct: 800  VVTWNAMINAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSACNHAGLVLEGYQIFS 859

Query: 442  MMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNK 501
             M ++YG+ PTIEHYGCLV +L R    +EA++ I  MP  P+  +W +LL   R HGN 
Sbjct: 860  SMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNI 919

Query: 502  DIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEH 561
             + E+AANN +K+       Y++LSN+YAAAG+WD V+++R +M+ RG RK+PG S IE 
Sbjct: 920  ALAEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEV 979

Query: 562  RGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENH 621
              ++HEF+  D+SHP+T EI+++L  +  +++ AG+ PDT  VL  +  +  +E  L  H
Sbjct: 980  DNIIHEFIAADRSHPETAEIYAELKRLSVEMEEAGYFPDTQHVLHDL-GKAHQETSLCTH 1038

Query: 622  SERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNG 681
            SERLAIA+GLI     +PIRI KNLR+C DCH+ +K +S +  REII RD++RFH FKNG
Sbjct: 1039 SERLAIAYGLIKTPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIARDSNRFHSFKNG 1098

Query: 682  SCSCKDFW 689
             CSC+D+W
Sbjct: 1099 KCSCEDYW 1106



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 135/506 (26%), Positives = 246/506 (48%), Gaps = 25/506 (4%)

Query: 36  ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFD-----RILQHPSLVLY 90
           E +++HA  V+  +     +S+ L+++YV          RS+ D     + +    ++ +
Sbjct: 45  EAKRIHAQMVEAWVGPDIFLSNLLINMYVK--------CRSVLDAHQVFKEMPRRDVISW 96

Query: 91  NLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFK 150
           N LI CY       +A  LF ++ +   +P+  T   ++        ++ GK+IH  + K
Sbjct: 97  NSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIK 156

Query: 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
            G+  D  V +SL+SMY K G++   R+VF  +  +D+VS+N ++  Y +K  V+  + L
Sbjct: 157 AGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGL 216

Query: 211 FDEMPDR----DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS----WNAMINGYMK 262
           F +M       D  ++  L+D F+    ++  + I        L S      A++   ++
Sbjct: 217 FGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVR 276

Query: 263 AGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSA 322
            GDVDSA + F     RD++ +N++IA    +G  +EA E    M    V  N  T +S 
Sbjct: 277 CGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSI 336

Query: 323 LSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKV 382
           L+A +    L  G+ +HS+I ++G   D  +G  LI MY++CG +  A  +F  + K+ +
Sbjct: 337 LNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDL 396

Query: 383 GHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNM 442
             W A+I G        +A+ L+ +M   G+KP  +TF+ +L+AC+++    DG+     
Sbjct: 397 ISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHED 456

Query: 443 MINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKD 502
           ++   GI+        L+++  R G L EA++  E    R + + W S+++G   HG+ +
Sbjct: 457 ILRS-GIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQAR-DVISWNSMIAGHAQHGSYE 514

Query: 503 IGEYAANNLI--KVAPDTIGCYVVLS 526
                   +   ++ PD I    VLS
Sbjct: 515 TAYKLFQEMQNEELEPDNITFASVLS 540



 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 127/470 (27%), Positives = 222/470 (47%), Gaps = 13/470 (2%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +++H+  +K        + + LLS+Y      +L  AR +F  I     +V YN ++  Y
Sbjct: 148 KKIHSQIIKAGYQRDPRVQNSLLSMY--GKCGDLPRARQVFAGISPR-DVVSYNTMLGLY 204

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
                  E L LF  +    + PD  T   ++        + EGK+IH L  + G   D 
Sbjct: 205 AQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDI 264

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
            V ++LV+M  + G++D  ++ F    D+D+V +N LI    + G    A + +  M   
Sbjct: 265 RVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSD 324

Query: 218 DL----FSWTCLVDGFSKCGKVEIAREIFYRMP----NRNLVSWNAMINGYMKAGDVDSA 269
            +     ++  +++  S    +E  + I   +     + ++   NA+I+ Y + GD+  A
Sbjct: 325 GVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKA 384

Query: 270 CELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGL 329
            ELF  M  RDLI+WN++IAGY       EA+ L + M    V P   T +  LSA A  
Sbjct: 385 RELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANS 444

Query: 330 AVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMI 389
           +    G+ +H  I+++G   +G L   L+ MY +CGS+  A  VF     + V  W +MI
Sbjct: 445 SAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMI 504

Query: 390 VGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGI 449
            G   HG    A  LF +M    ++P  ITF  VL+ C +   +  G++  +  I + G+
Sbjct: 505 AGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQ-IHGRITESGL 563

Query: 450 EPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
           +  +     L+++  R G L++A++   S+  R + + W +++ G  + G
Sbjct: 564 QLDVNLGNALINMYIRCGSLQDARNVFHSLQHR-DVMSWTAMIGGCADQG 612



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 95/379 (25%), Positives = 190/379 (50%), Gaps = 10/379 (2%)

Query: 124 TLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAM 183
           T   +++   R   + E K+IH  + +   G D F+ + L++MY K   +    +VF  M
Sbjct: 29  TYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVFKEM 88

Query: 184 DDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAR 239
             +D++SWN LI  Y ++G  + A +LF+EM +        ++  ++       ++E  +
Sbjct: 89  PRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGK 148

Query: 240 EIFYRM----PNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNG 295
           +I  ++      R+    N++++ Y K GD+  A ++F  +  RD++++N+M+  Y    
Sbjct: 149 KIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKA 208

Query: 296 RFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGT 355
              E L L   M    + P+  T ++ L A    ++L++G+ +H   V+ G   D  +GT
Sbjct: 209 YVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGT 268

Query: 356 LLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKP 415
            L+ M  +CG ++SA   F+  + + V  + A+I  L  HG   +A + + +M   G+  
Sbjct: 269 ALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVAL 328

Query: 416 TAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKST 475
              T++ +LNACS +  +  G +  +  I++ G    ++    L+ +  R G L +A+  
Sbjct: 329 NRTTYLSILNACSTSKALEAG-KLIHSHISEDGHSSDVQIGNALISMYARCGDLPKAREL 387

Query: 476 IESMPMRPNFVIWMSLLSG 494
             +MP R + + W ++++G
Sbjct: 388 FYTMPKR-DLISWNAIIAG 405



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 110/240 (45%), Gaps = 7/240 (2%)

Query: 317 ATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRA 376
           AT V+ L       +L + + +H+ +V+     D  L  LLI MY KC S+  A  VF+ 
Sbjct: 28  ATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVFKE 87

Query: 377 ISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDG 436
           + ++ V  W ++I      G   +A  LF +M   G  P  IT+I +L AC     + +G
Sbjct: 88  MPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENG 147

Query: 437 RRYFNMMIN-DYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLS-- 493
           ++  + +I   Y  +P +++   L+ +  + G L  A+     +  R + V + ++L   
Sbjct: 148 KKIHSQIIKAGYQRDPRVQN--SLLSMYGKCGDLPRARQVFAGISPR-DVVSYNTMLGLY 204

Query: 494 GARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKD 553
             + +  + +G +   +   ++PD +  Y+ L + +      D+   + ++  + G   D
Sbjct: 205 AQKAYVKECLGLFGQMSSEGISPDKV-TYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSD 263


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 258/635 (40%), Positives = 376/635 (59%), Gaps = 21/635 (3%)

Query: 75  RSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAAR 134
           RS+F + +   S+  +N +I  +  +  S +AL  F  +    L P+  T PC IK  + 
Sbjct: 39  RSMFGKYVDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSS 98

Query: 135 LGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCL 194
           L  +  GKQIH   F  G+G D FV S+L+ MY+K G ++  R++FD + ++++VSW  +
Sbjct: 99  LYDLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSM 158

Query: 195 IDGYVKKGEVEVAMKLF------DEMPDRDLFSWTCLVDG------FSKCGKVEI--ARE 240
           I GYV+      A+ LF      DE    ++      VD        S C +V +    E
Sbjct: 159 ISGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTE 218

Query: 241 IFYRMPNRN-----LVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNG 295
             + +  +      L   N +++ Y K G++  + ++FD ME  D+ +WNS+IA Y  NG
Sbjct: 219 CVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNG 278

Query: 296 RFMEALELLETMLI-GDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLG 354
             +EA  L   M+  G+V  N  TL + L A A    L  G+ +H  +VK     + V+G
Sbjct: 279 LSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVG 338

Query: 355 TLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMK 414
           T ++ MY KCG +E A   F  + +K V  WT M+ G GMHG   +A+ +F +M R G+K
Sbjct: 339 TSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIK 398

Query: 415 PTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKS 474
           P  ITF+ VL ACSHAGL+ +G  +FN M  ++ +EP IEHY C+VD+L R GYL+EA  
Sbjct: 399 PNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLKEAYG 458

Query: 475 TIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQ 534
            I+ M ++P+F++W SLL   R H N ++GE +A  L K+ P   G YV+LSNIYA AG+
Sbjct: 459 LIQEMKVKPDFIVWGSLLGACRIHKNVELGEISARKLFKLDPSNCGYYVLLSNIYADAGR 518

Query: 535 WDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKA 594
           WD V  +R +MK  G  K PG S +EH+G +H F+VGDK HPQ ++I+  L E+  KL+ 
Sbjct: 519 WDDVERMRILMKNHGLLKTPGYSIVEHKGRVHVFLVGDKEHPQHEKIYEYLDELNVKLQE 578

Query: 595 AGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHS 654
            G++P+ T VL  + D +EK   L  HSE+LA+AFG++N    S I+I+KNLR+C DCH 
Sbjct: 579 VGYMPNVTSVLYDV-DVEEKGMVLRVHSEKLAVAFGIMNSVPGSVIQIIKNLRICGDCHF 637

Query: 655 VTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
             KL+S I NREI++RD+ RFHHFK+G CSC D+W
Sbjct: 638 AIKLISKIVNREIVIRDSKRFHHFKDGLCSCGDYW 672


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 257/673 (38%), Positives = 404/673 (60%), Gaps = 22/673 (3%)

Query: 31  SSTHK-ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVL 89
           S+THK + +Q+HA  +   L +   + ++L+  +      ++ +AR +FD  L  P +  
Sbjct: 30  SATHKAQLKQIHARLLVLGLQFSGFLITKLI--HASSSFGDITFARQVFDD-LPRPQIFP 86

Query: 90  YNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVF 149
           +N +I+ Y  N    +AL ++ ++    + PD+FT P ++K  + L  ++ G+ +H  VF
Sbjct: 87  WNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVF 146

Query: 150 KLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD--DKDLVSWNCLIDGYVKKGEVEVA 207
           +LGF  D FV + L+++YAK   +   R VF+ +   ++ +VSW  ++  Y + GE   A
Sbjct: 147 RLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEA 206

Query: 208 MKLFDEMPDRDLF-SWTCLV---DGFSKCGKVEIAREIFYRMPNRNL-------VSWNAM 256
           +++F  M   D+   W  LV   + F+    ++  R I   +    L       +S N M
Sbjct: 207 LEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTM 266

Query: 257 INGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPND 316
              Y K G V +A  LFD M+  +LI WN+MI+GY  NG   EA+++   M+  DV P+ 
Sbjct: 267 ---YAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDT 323

Query: 317 ATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRA 376
            ++ SA+SA A +  L + R M+ Y+ ++ +  D  + + LI M++KCGS+E A  VF  
Sbjct: 324 ISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDR 383

Query: 377 ISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDG 436
              + V  W+AMIVG G+HG A +A+ L+  M R G+ P  +TF+G+L AC+H+G+V +G
Sbjct: 384 TLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREG 443

Query: 437 RRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGAR 496
             +FN+M  D+ I P  +HY C++D+L R G+L++A   I+ MP++P   +W +LLS  +
Sbjct: 444 WWFFNLMA-DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACK 502

Query: 497 NHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGS 556
            H + ++GEYAA  L  + P   G YV LSN+YAAA  WD+V+EVR  MK++G  KD G 
Sbjct: 503 KHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGC 562

Query: 557 SSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEA 616
           S +E RG L  F VGDKSHP+ +EI  ++  + ++LK  G V +    L  + D+ E E 
Sbjct: 563 SWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDE-EAEE 621

Query: 617 ELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFH 676
            L +HSER+AIA+GLI+    +P+RI KNLR C +CH+ TKL+S + +REI+VRD +RFH
Sbjct: 622 TLCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFH 681

Query: 677 HFKNGSCSCKDFW 689
           HFK+G CSC D+W
Sbjct: 682 HFKDGVCSCGDYW 694


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 257/673 (38%), Positives = 404/673 (60%), Gaps = 22/673 (3%)

Query: 31  SSTHK-ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVL 89
           S+THK + +Q+HA  +   L +   + ++L+  +      ++ +AR +FD  L  P +  
Sbjct: 30  SATHKAQLKQIHARLLVLGLQFSGFLITKLI--HASSSFGDITFARQVFDD-LPRPQIFP 86

Query: 90  YNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVF 149
           +N +I+ Y  N    +AL ++ ++    + PD+FT P ++K  + L  ++ G+ +H  VF
Sbjct: 87  WNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVF 146

Query: 150 KLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD--DKDLVSWNCLIDGYVKKGEVEVA 207
           +LGF  D FV + L+++YAK   +   R VF+ +   ++ +VSW  ++  Y + GE   A
Sbjct: 147 RLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEA 206

Query: 208 MKLFDEMPDRDLFS-WTCLV---DGFSKCGKVEIAREIFYRMPNRNL-------VSWNAM 256
           +++F +M   D+   W  LV   + F+    ++  R I   +    L       +S N M
Sbjct: 207 LEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTM 266

Query: 257 INGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPND 316
              Y K G V +A  LFD M+  +LI WN+MI+GY  NG   EA+++   M+  DV P+ 
Sbjct: 267 ---YAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDT 323

Query: 317 ATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRA 376
            ++ SA+SA A +  L + R M+ Y+ ++ +  D  + + LI M++KCGS+E A  VF  
Sbjct: 324 ISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDR 383

Query: 377 ISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDG 436
              + V  W+AMIVG G+HG A +A+ L+  M R G+ P  +TF+G+L AC+H+G+V +G
Sbjct: 384 TLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREG 443

Query: 437 RRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGAR 496
             +FN M  D+ I P  +HY C++D+L R G+L++A   I+ MP++P   +W +LLS  +
Sbjct: 444 WWFFNRMA-DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACK 502

Query: 497 NHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGS 556
            H + ++GEYAA  L  + P   G YV LSN+YAAA  WD+V+EVR  MK++G  KD G 
Sbjct: 503 KHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGC 562

Query: 557 SSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEA 616
           S +E RG L  F VGDKSHP+ +EI  ++  + ++LK  G V +    L  + D+ E E 
Sbjct: 563 SWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDE-EAEE 621

Query: 617 ELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFH 676
            L +HSER+AIA+GLI+    +P+RI KNLR C +CH+ TKL+S + +REI+VRD +RFH
Sbjct: 622 TLCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFH 681

Query: 677 HFKNGSCSCKDFW 689
           HFK+G CSC D+W
Sbjct: 682 HFKDGVCSCGDYW 694


>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 257/573 (44%), Positives = 349/573 (60%), Gaps = 40/573 (6%)

Query: 156 DKFVLSSLVSMYA--KFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDE 213
           D F  S +V+  A    G +   R VF+ + +    + N +I GY  K     A+  +  
Sbjct: 9   DPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQL 68

Query: 214 M------PDR------------------------------DLFSWTCLVDGFSKCGKVEI 237
           M      PDR                              D +    L++ +S CG +  
Sbjct: 69  MMLQGLDPDRFTFPSLFKSCGVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVS 128

Query: 238 AREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEI-RDLITWNSMIAGYELNGR 296
           AR++F +M N+++VSW  MI  Y +      A +LF  MEI  +L  WN MI G+  +  
Sbjct: 129 ARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSD 188

Query: 297 FMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTL 356
           + EAL L   M +  V  +  T+ S L A   L  L  G+W+H YI K    VD  LGT 
Sbjct: 189 YEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTA 248

Query: 357 LIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT 416
           L+ MY+KCGSIESA+ VF+ + +K V  WTA+IVGL M G   +AL+LF++M    +KP 
Sbjct: 249 LVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPD 308

Query: 417 AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTI 476
           AITF+GVL ACSHAGLVN+G  YFN M N YGI+P+IEHYGC+VD+L R G + EA+  I
Sbjct: 309 AITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLI 368

Query: 477 ESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWD 536
           ++MPM P++ + + LLS  R HGN  + E AA  LI++ P   G YV+LSNIY++   W+
Sbjct: 369 QNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWE 428

Query: 537 KVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAG 596
              ++RE+M +R  +K PG S+IE  GV+HEFV GD SHPQ+ EI+  L +M  +LK+AG
Sbjct: 429 AAKKMRELMVERNIKKPPGCSAIEVGGVVHEFVKGDVSHPQSSEIYETLDDMMRRLKSAG 488

Query: 597 HVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVT 656
           +VPD ++VL  + D+KEKE EL  HSE+LAIAFGL++    +PIR+VKNLRVC+DCHS  
Sbjct: 489 YVPDKSEVLFDM-DEKEKENELSLHSEKLAIAFGLLSTTPGTPIRVVKNLRVCSDCHSAM 547

Query: 657 KLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           K +S +YNREIIVRD +RFHHF  GSCSC+DFW
Sbjct: 548 KFISEVYNREIIVRDRNRFHHFTKGSCSCRDFW 580



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 110/431 (25%), Positives = 188/431 (43%), Gaps = 80/431 (18%)

Query: 45  VKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSH 104
           ++T L      +S++++        +L YAR +F++I  +P+    N +I+ Y       
Sbjct: 2   LRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFNQI-PNPTTFTCNSIIRGYTNKNLPR 60

Query: 105 EALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLV 164
           +A+  +  ++ + L PD FT P + K     G + EGKQ+H    KLGF  D ++ ++L+
Sbjct: 61  QAILFYQLMMLQGLDPDRFTFPSLFKSC---GVLCEGKQLHCHSTKLGFASDAYIQNTLM 117

Query: 165 SMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP-DRDLFSWT 223
           +MY+  G +   R+VFD M +K +VSW  +I  Y +      A+KLF  M    +LF W 
Sbjct: 118 NMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWN 177

Query: 224 CLVDGFSKCGKVEIAREIFYRMP----------------------NRNLVSW-------- 253
            +++G  +    E A  +F  M                          L  W        
Sbjct: 178 IMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKE 237

Query: 254 ---------NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELL 304
                     A+++ Y K G ++SA  +F +M  +D++TW ++I G  + G+ ++ALEL 
Sbjct: 238 KIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELF 297

Query: 305 ETMLIGDVLPNDATLVSALSAVAGLAVLNKG-RWMHSYIVKNGFVVDGVLGTLLIQMYSK 363
             M + +V P+  T V  L+A +   ++N+G  + +S   K G                 
Sbjct: 298 HEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGI---------------- 341

Query: 364 CGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGV 423
                          +  + H+  M+  LG  G   +A DL      M M P     +G+
Sbjct: 342 ---------------QPSIEHYGCMVDMLGRAGRIAEAEDLIQN---MPMAPDYFVLVGL 383

Query: 424 LNACS-HAGLV 433
           L+AC  H  LV
Sbjct: 384 LSACRIHGNLV 394


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 256/582 (43%), Positives = 342/582 (58%), Gaps = 36/582 (6%)

Query: 143 QIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKG 202
           QIH ++F+ G      +   L   YA  G +D    +F    +  +  W  +I G+  +G
Sbjct: 48  QIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRG 107

Query: 203 EVEVAMKLFDEM----------------------P-------------DRDLFSWTCLVD 227
             E A+  + +M                      P             D DL+  T L+D
Sbjct: 108 LHEQALNFYAQMLTQGVEPNAFTFSSILKLCPIEPGKALHSQAVKLGFDSDLYVRTGLLD 167

Query: 228 GFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSM 287
            +++ G V  A+++F  MP ++LVS  AM+  Y K G++D+A  LFD ME RD + WN M
Sbjct: 168 VYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVM 227

Query: 288 IAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGF 347
           I GY  NG   EAL L   ML     PN+ T++S LSA   L  L  GRW+HSYI  NG 
Sbjct: 228 IDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGI 287

Query: 348 VVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNK 407
             +  +GT L+ MYSKCGS+E A  VF  I  K V  W +MIVG  MHG + +AL LF  
Sbjct: 288 QFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKS 347

Query: 408 MCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTG 467
           MCRMG+ PT ITFIG+L+AC H+G V +G   FN M ++YGIEP IEHYGC+V++L R G
Sbjct: 348 MCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAG 407

Query: 468 YLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSN 527
           ++E+A   +++M + P+ V+W +LL   R HG   +GE     L+       G Y++LSN
Sbjct: 408 HVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSN 467

Query: 528 IYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSE 587
           IYAA G WD V+ +R MMK  G +K+PG SSIE    +HEF+ G  +HP+  EI+  L E
Sbjct: 468 IYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEE 527

Query: 588 MRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLR 647
           +   LK+ G+ P T  VL  I  + EKE  LE HSE+LAIAFGLIN +  + I+IVKNLR
Sbjct: 528 INGWLKSHGYTPQTDIVLHDI-GETEKERSLEVHSEKLAIAFGLINTQPGTTIKIVKNLR 586

Query: 648 VCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           VC DCH VTKL+S I  R+I+VRD +RFHHF NGSCSC D+W
Sbjct: 587 VCADCHEVTKLISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 628



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 120/454 (26%), Positives = 209/454 (46%), Gaps = 79/454 (17%)

Query: 31  SSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLY 90
           S T     Q+HA+  +  L +H  ++ +L   Y    +  L Y+ ++F R  Q+PS+  +
Sbjct: 40  SKTISHLLQIHAVLFRHGLDHHPILNFKLQRSYAS--LGRLDYSVALFGRT-QNPSVFFW 96

Query: 91  NLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFK 150
             +I  +       +AL  +  +L + + P+ FT   ++K    L  I+ GK +H    K
Sbjct: 97  TAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILK----LCPIEPGKALHSQAVK 152

Query: 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
           LGF  D +V + L+ +YA+ G++   +++FD M +K LVS   ++  Y K GE++ A  L
Sbjct: 153 LGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVL 212

Query: 211 FDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM------PNR---------------- 248
           FD M +RD   W  ++DG+++ G    A  +F RM      PN                 
Sbjct: 213 FDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGAL 272

Query: 249 ------------NLVSWN-----AMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGY 291
                       N + +N     A+++ Y K G ++ A  +FD ++ +D++ WNSMI GY
Sbjct: 273 ESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGY 332

Query: 292 ELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDG 351
            ++G   EAL+L ++M    + P + T +  LSA             HS     G+V +G
Sbjct: 333 AMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACG-----------HS-----GWVTEG 376

Query: 352 VLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRM 411
               +  +M  + G IE            K+ H+  M+  LG  G   QA +L      M
Sbjct: 377 --WDIFNKMKDEYG-IEP-----------KIEHYGCMVNLLGRAGHVEQAYELVKN---M 419

Query: 412 GMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN 445
            ++P  + +  +L AC   G +  G +   ++++
Sbjct: 420 NIEPDPVLWGTLLGACRLHGKIALGEKIVELLVD 453



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/270 (31%), Positives = 136/270 (50%), Gaps = 14/270 (5%)

Query: 71  LHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIK 130
           L  AR +FD + +    V +N++I  Y  N   +EAL LF  +L     P+  T+  V+ 
Sbjct: 206 LDAARVLFDGMEERDG-VCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLS 264

Query: 131 GAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVS 190
              +LGA++ G+ +H  +   G  F+  V ++LV MY+K G ++  R VFD +DDKD+V+
Sbjct: 265 ACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVA 324

Query: 191 WNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDG-FSKCGK---VEIAREIFYRMP 246
           WN +I GY   G  + A++LF  M    L        G  S CG    V    +IF +M 
Sbjct: 325 WNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMK 384

Query: 247 NR-----NLVSWNAMINGYMKAGDVDSACELFDDMEIR-DLITWNSMIAGYELNGRFMEA 300
           +       +  +  M+N   +AG V+ A EL  +M I  D + W +++    L+G+    
Sbjct: 385 DEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALG 444

Query: 301 LELLETMLIGDVLPNDAT--LVSALSAVAG 328
            +++E +L+   L N  T  L+S + A  G
Sbjct: 445 EKIVE-LLVDQNLANSGTYILLSNIYAAVG 473


>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  483 bits (1244), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 260/702 (37%), Positives = 405/702 (57%), Gaps = 47/702 (6%)

Query: 27  ILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPS 86
           I+ FS    E  Q+H + VK  L+    +++ L+  Y       +   R +FD +L+  +
Sbjct: 135 IMAFS----EGVQVHGVVVKMGLVKDLFVANSLIHFY--AACGKVDLGRKVFDEMLER-N 187

Query: 87  LVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHG 146
           +V +  LI  Y     + EA+ LF ++++  + P+  T+ C I   A+L  ++ GK++  
Sbjct: 188 VVSWTSLINGYSVVNMAKEAVCLFFEMVEVGVEPNPVTMVCAISACAKLKDLELGKKVCN 247

Query: 147 LVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEV 206
           L+ +LG   +  V+++L+ MY K G++   R +FD   DK+LV +N ++  YV+ G    
Sbjct: 248 LMTELGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGE 307

Query: 207 AMKLFDEM------PDRDLFSWT---------------------------------CLVD 227
            + + DEM      PD+     T                                  ++D
Sbjct: 308 VLVVLDEMLQKGQRPDKVTMLSTIAACAQLGDLSVGKSSHAYVFRNGLERLDNISNAIID 367

Query: 228 GFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSM 287
            + KCGK E A ++F  M N+ +V+WN++I G ++ G+++ A  +F +M   +L++WN+M
Sbjct: 368 MYMKCGKREAACKVFDSMSNKTVVTWNSLIAGLVRDGELELALRIFGEMPESNLVSWNTM 427

Query: 288 IAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGF 347
           I        F EA++LL  M    +  +  T+V   SA   L  L+  +W+++YI KN  
Sbjct: 428 IGAMVQASMFEEAIDLLREMQNQGIKGDRVTMVGIASACGYLGALDLAKWIYTYIEKNDI 487

Query: 348 VVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNK 407
            +D  LGT L+ M+S+CG   +A+ VF  + K+ V  WTA I    + G A  A++LF++
Sbjct: 488 HIDMQLGTALVDMFSRCGDPLNAMRVFENMEKRDVSAWTAAIRVKAVEGNAKGAIELFDE 547

Query: 408 MCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTG 467
           M +  +K     F+ +L A SH G V+ GR+ F  M   +G+ P I HYGC+VD+L R G
Sbjct: 548 MLKQDVKADDFVFVALLTAFSHGGYVDQGRQLFWAMEKIHGVSPQIVHYGCMVDLLGRAG 607

Query: 468 YLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSN 527
            LEEA   ++SMP++PN VIW S L+  R H N +   YA   + ++AP+ +G +V+LSN
Sbjct: 608 LLEEAFDLMKSMPIKPNDVIWGSFLAACRKHKNVEFANYADEKITQLAPEKVGIHVLLSN 667

Query: 528 IYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSE 587
           IYA+AG+W+ V+ VR  MK++GF+K  GSSSIE  G++ EF  GD+SH +  +I   L E
Sbjct: 668 IYASAGKWNDVARVRLQMKEKGFQKVAGSSSIEVHGLIREFTSGDESHTENAQIGLMLQE 727

Query: 588 MRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLR 647
           +  ++   G+VPDTT VL+ + D++EKE  L  HSE+LA+A+GLIN     PIR+VKNLR
Sbjct: 728 INCRISQVGYVPDTTNVLVDV-DEQEKEHLLSRHSEKLAMAYGLINTGKGIPIRVVKNLR 786

Query: 648 VCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           +C+DCHS  KL+S +Y REI VRDN+R+H FK G CSC+DFW
Sbjct: 787 MCSDCHSFAKLVSKLYGREITVRDNNRYHFFKEGFCSCRDFW 828



 Score =  198 bits (503), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 151/540 (27%), Positives = 259/540 (47%), Gaps = 49/540 (9%)

Query: 3   TQTL-QHSSPIHALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLS 61
           T TL Q SSP+  L      +   + L+   T  E +QLH   +K  +   + + +  + 
Sbjct: 5   TTTLHQSSSPL--LLPTTTQKPKNSSLQTCKTLIELKQLHCNMLKKGVFNINKLIAACVQ 62

Query: 62  LYVDPHINNLHYARSIFDRIL-QHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRF-LL 119
           +     +N   YA + F        SL   N LI+ Y  +    EA+ ++  ++    ++
Sbjct: 63  MGTHESLN---YALNAFKEDEGTKCSLYTCNTLIRGYAASGLCKEAIFIYLHMIIVMGIV 119

Query: 120 PDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRV 179
           PDNFT P ++   +++ A  EG Q+HG+V K+G   D FV +SL+  YA  G++DLGR+V
Sbjct: 120 PDNFTFPFLLSACSKIMAFSEGVQVHGVVVKMGLVKDLFVANSLIHFYAACGKVDLGRKV 179

Query: 180 FDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKV 235
           FD M ++++VSW  LI+GY      + A+ LF EM +  +     +  C +   +K   +
Sbjct: 180 FDEMLERNVVSWTSLINGYSVVNMAKEAVCLFFEMVEVGVEPNPVTMVCAISACAKLKDL 239

Query: 236 EIAREIFYRMP----NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGY 291
           E+ +++   M       N +  NA+++ YMK GD+ +  E+FD+   ++L+ +N++++ Y
Sbjct: 240 ELGKKVCNLMTELGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNY 299

Query: 292 ELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDG 351
             +G   E L +L+ ML     P+  T++S ++A A L  L+ G+  H+Y+ +NG     
Sbjct: 300 VQHGLAGEVLVVLDEMLQKGQRPDKVTMLSTIAACAQLGDLSVGKSSHAYVFRNGLERLD 359

Query: 352 VLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHG--------------- 396
            +   +I MY KCG  E+A  VF ++S K V  W ++I GL   G               
Sbjct: 360 NISNAIIDMYMKCGKREAACKVFDSMSNKTVVTWNSLIAGLVRDGELELALRIFGEMPES 419

Query: 397 ----------------MATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYF 440
                           M  +A+DL  +M   G+K   +T +G+ +AC + G + D  ++ 
Sbjct: 420 NLVSWNTMIGAMVQASMFEEAIDLLREMQNQGIKGDRVTMVGIASACGYLGAL-DLAKWI 478

Query: 441 NMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGN 500
              I    I   ++    LVD+  R G    A    E+M  R +   W + +      GN
Sbjct: 479 YTYIEKNDIHIDMQLGTALVDMFSRCGDPLNAMRVFENMEKR-DVSAWTAAIRVKAVEGN 537



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 99/397 (24%), Positives = 182/397 (45%), Gaps = 35/397 (8%)

Query: 140 EGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD-----LVSWNCL 194
           E KQ+H  + K G     F ++ L++   + G  +      +A  + +     L + N L
Sbjct: 37  ELKQLHCNMLKKGV----FNINKLIAACVQMGTHESLNYALNAFKEDEGTKCSLYTCNTL 92

Query: 195 IDGYVKKGEVEVAMKLFDEM-------PDRDLFSWTCLVDGFSKCGKVEIARE------I 241
           I GY   G  + A+ ++  M       PD   F +       S C K+    E      +
Sbjct: 93  IRGYAASGLCKEAIFIYLHMIIVMGIVPDNFTFPFL-----LSACSKIMAFSEGVQVHGV 147

Query: 242 FYRMP-NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEA 300
             +M   ++L   N++I+ Y   G VD   ++FD+M  R++++W S+I GY +     EA
Sbjct: 148 VVKMGLVKDLFVANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLINGYSVVNMAKEA 207

Query: 301 LELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQM 360
           + L   M+   V PN  T+V A+SA A L  L  G+ + + + + G   + ++   L+ M
Sbjct: 208 VCLFFEMVEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLMTELGVKSNTLVVNALLDM 267

Query: 361 YSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITF 420
           Y KCG + +   +F   S K +  +  ++     HG+A + L + ++M + G +P  +T 
Sbjct: 268 YMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQRPDKVTM 327

Query: 421 IGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP 480
           +  + AC+  G ++ G+     +  + G+E        ++D+  + G  E A    +SM 
Sbjct: 328 LSTIAACAQLGDLSVGKSSHAYVFRN-GLERLDNISNAIIDMYMKCGKREAACKVFDSMS 386

Query: 481 MRPNFVIWMSLLSGARNHGNKDI-----GEYAANNLI 512
            +   V W SL++G    G  ++     GE   +NL+
Sbjct: 387 NK-TVVTWNSLIAGLVRDGELELALRIFGEMPESNLV 422


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  483 bits (1244), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 260/663 (39%), Positives = 387/663 (58%), Gaps = 16/663 (2%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           Q++H   VK        + + L+ +Y +  + +L  AR +FD+I ++  +V ++ +I+ Y
Sbjct: 144 QEVHGFVVKNGFHGDVFVCNALIMMYSE--VGSLALARLLFDKI-ENKDVVSWSTMIRSY 200

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
             +    EAL L  D+    + P    +  +    A L  +K GK +H  V + G     
Sbjct: 201 DRSGLLDEALDLLRDMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKS 260

Query: 158 FV--LSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP 215
            V   ++L+ MY K   +   RRVFD +    ++SW  +I  Y+    +   ++LF +M 
Sbjct: 261 GVPLCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKML 320

Query: 216 DRDLF----SWTCLVDGFSKCGKVEIAREIFYRMPNRN-----LVSWNAMINGYMKAGDV 266
              +F    +   LV      G +E+ + + +    RN     LV   A I+ Y K GDV
Sbjct: 321 GEGMFPNEITMLSLVKECGTAGALELGK-LLHAFTLRNGFTLSLVLATAFIDMYGKCGDV 379

Query: 267 DSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326
            SA  +FD  + +DL+ W++MI+ Y  N    EA ++   M    + PN+ T+VS L   
Sbjct: 380 RSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMIC 439

Query: 327 AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWT 386
           A    L  G+W+HSYI K G   D +L T  + MY+ CG I++A  +F   + + +  W 
Sbjct: 440 AKAGSLEMGKWIHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDISMWN 499

Query: 387 AMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIND 446
           AMI G  MHG    AL+LF +M  +G+ P  ITFIG L+ACSH+GL+ +G+R F+ M+++
Sbjct: 500 AMISGFAMHGHGEAALELFEEMEALGVTPNDITFIGALHACSHSGLLQEGKRLFHKMVHE 559

Query: 447 YGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEY 506
           +G  P +EHYGC+VD+L R G L+EA   I+SMPMRPN  ++ S L+  + H N  +GE+
Sbjct: 560 FGFTPKVEHYGCMVDLLGRAGLLDEAHELIKSMPMRPNIAVFGSFLAACKLHKNIKLGEW 619

Query: 507 AANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLH 566
           AA   + + P   G  V++SNIYA+A +W  V+ +R  MK  G  K+PG SSIE  G+LH
Sbjct: 620 AAKQFLSLEPHKSGYNVLMSNIYASANRWGDVAYIRRAMKDEGIVKEPGVSSIEVNGLLH 679

Query: 567 EFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLA 626
           EF++GD+ HP   +++  + EMR KL+ AG+ PD + VL  I D+++K + L  HSE+LA
Sbjct: 680 EFIMGDREHPDAKKVYEMIDEMREKLEDAGYTPDVSCVLHNI-DKEKKVSALNYHSEKLA 738

Query: 627 IAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCK 686
           +A+GLI+     PIRIVKNLRVC+DCH+ TKLLS IY REIIVRD +RFHHFK GSCSC 
Sbjct: 739 MAYGLISTAPGVPIRIVKNLRVCDDCHNATKLLSKIYGREIIVRDRNRFHHFKEGSCSCC 798

Query: 687 DFW 689
           D+W
Sbjct: 799 DYW 801



 Score =  189 bits (479), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 140/521 (26%), Positives = 242/521 (46%), Gaps = 55/521 (10%)

Query: 4   QTLQHSSPIHALQQ--------HLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGI 55
            T Q+ SP     Q        H+   LH N+        ETQQLH   +KT+    S  
Sbjct: 25  NTNQYHSPTLKFTQSQPKPNVPHIQQELHINL-------NETQQLHGHFIKTS----SNC 73

Query: 56  SSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLD 115
           S R+    ++ + +N                  +++ LI  Y+ N    +A  ++  +  
Sbjct: 74  SYRVPLAALESYSSNA----------------AIHSFLITSYIKNNCPADAAKIYAYMRG 117

Query: 116 RFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDL 175
                DNF +P V+K    + +   G+++HG V K GF  D FV ++L+ MY++ G + L
Sbjct: 118 TDTEVDNFVIPSVLKACCLIPSFLLGQEVHGFVVKNGFHGDVFVCNALIMMYSEVGSLAL 177

Query: 176 GRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM-------PDRDLFSWTCLVDG 228
            R +FD +++KD+VSW+ +I  Y + G ++ A+ L  +M        +  + S T ++  
Sbjct: 178 ARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLRDMHVMRVKPSEIGMISITHVLAE 237

Query: 229 FS--KCGKVEIAREIFYRMPN-----RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDL 281
            +  K GK   A    Y M N       +    A+I+ Y+K  ++  A  +FD +    +
Sbjct: 238 LADLKLGKAMHA----YVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKASI 293

Query: 282 ITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSY 341
           I+W +MIA Y       E + L   ML   + PN+ T++S +        L  G+ +H++
Sbjct: 294 ISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELGKLLHAF 353

Query: 342 IVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQA 401
            ++NGF +  VL T  I MY KCG + SA +VF +   K +  W+AMI     +    +A
Sbjct: 354 TLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEA 413

Query: 402 LDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVD 461
            D+F  M   G++P   T + +L  C+ AG +  G ++ +  I+  GI+  +      VD
Sbjct: 414 FDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMG-KWIHSYIDKQGIKGDMILKTSFVD 472

Query: 462 ILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKD 502
           +    G ++ A         R +  +W +++SG   HG+ +
Sbjct: 473 MYANCGDIDTAHRLFAEATDR-DISMWNAMISGFAMHGHGE 512


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 272/739 (36%), Positives = 401/739 (54%), Gaps = 86/739 (11%)

Query: 31  SSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARS--IFDRILQHPSLV 88
           +++  +T+Q HA  +KT L   + ++++LLS Y     NN+ +A +  + D ++  P++ 
Sbjct: 26  TASLSQTRQAHAHILKTGLFNDTHLATKLLSHYA----NNMCFADATLVLD-LVPEPNVF 80

Query: 89  LYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLV 148
            ++ LI  +    + H AL+ F  +L R L+PDN  LP  +K  A L A+K  +Q+HG+ 
Sbjct: 81  SFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIA 140

Query: 149 FKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD--------------------- 187
              GF  D FV SSLV MY K  +I    RVFD M + D                     
Sbjct: 141 SVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAK 200

Query: 188 --------------LVSWNCLIDGYVKKGEVEVAMKLFDEM------PD----------- 216
                         L+SWN +I G+   G    A+ +F +M      PD           
Sbjct: 201 RLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAV 260

Query: 217 ------------------RDLFSWTC----LVDGFSKCGKVEIAREIFYRMPNRNLVSWN 254
                             + L S  C    L+D + KC       ++F +M + ++ S N
Sbjct: 261 GDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCN 320

Query: 255 AMINGYMKAGDVDSACELFDDMEIR----DLITWNSMIAGYELNGRFMEALELLETMLIG 310
           A I G  + G V+S+  LF  ++ +    ++++W SMIA    NGR +EALEL   M I 
Sbjct: 321 AFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIA 380

Query: 311 DVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESA 370
            V PN  T+   L A   +A L  G+  H + ++ G   D  +G+ LI MY+KCG I+++
Sbjct: 381 GVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQAS 440

Query: 371 LTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHA 430
              F  I  K +  W A+I G  MHG A +A+++F+ M R G KP  I+F  VL+ACS +
Sbjct: 441 RICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQS 500

Query: 431 GLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMS 490
           GL  +G  YFN M + YGIE  +EHY C+V +L R G LE+A + I  MP+ P+  +W +
Sbjct: 501 GLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGA 560

Query: 491 LLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGF 550
           LLS  R H N  +GE AA  L ++ P   G Y++LSNIYA+ G W++V+ VR+MMK +G 
Sbjct: 561 LLSSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGL 620

Query: 551 RKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIED 610
           RK+PG S IE +  +H  + GDKSHPQ  +I  KL ++  ++K  G+ P+   VL  +E+
Sbjct: 621 RKNPGCSWIEVKNKVHMLLAGDKSHPQMTQIIEKLDKLSMEMKKLGYFPEINFVLQDVEE 680

Query: 611 QKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVR 670
           Q +KE  L  HSE+LA+ FGL+N     P++++KNLR+C DCH V K +S    REI VR
Sbjct: 681 Q-DKEQILCGHSEKLAVVFGLLNTPPGYPLQVIKNLRICGDCHVVIKFISSFERREIFVR 739

Query: 671 DNSRFHHFKNGSCSCKDFW 689
           D +RFHHFK G+CSC D+W
Sbjct: 740 DTNRFHHFKEGACSCGDYW 758


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 265/659 (40%), Positives = 396/659 (60%), Gaps = 29/659 (4%)

Query: 55  ISSRLLSLYVDP--HINNL-----------HYARSIFDRILQHPSLVLYNLLIKCYVFNQ 101
           I +RLL L++D   ++ NL           +Y++ +F ++ + P++ L+N +I+  V   
Sbjct: 35  IHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQV-KEPNIFLWNTMIRGLVSKD 93

Query: 102 RSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLS 161
              +A+ L+  +     LP+NFT+P V+K  AR   ++ G +IH L+ K G+  D FV +
Sbjct: 94  CFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKT 153

Query: 162 SLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR---- 217
           SL+S+Y K    D   +VFD + DK++VSW  +I GY+  G    A+  F ++ +     
Sbjct: 154 SLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKP 213

Query: 218 DLFSWTCLVDGFSKCGKVE-------IAREIFYRMPNRNLVSWNAMINGYMKAGDVDSAC 270
           D FS   LV   + C ++        I R I      RN+    ++++ Y+K G+++ A 
Sbjct: 214 DSFS---LVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERAN 270

Query: 271 ELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLA 330
            +F  M  +D+++W++MI GY  NG   +AL+L   M   ++ P+  T+V  LSA A L 
Sbjct: 271 LIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLG 330

Query: 331 VLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIV 390
            L+ G W  S + +N F+ + VLGT LI MYSKCGS+  A  +F A+ KK    W AM+V
Sbjct: 331 ALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKKKDRVVWNAMMV 390

Query: 391 GLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIE 450
           GL M+G A     LF+ + + G++P   TFIG+L  C+H G VN+GR++FN M   + + 
Sbjct: 391 GLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLT 450

Query: 451 PTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANN 510
           P+IEHYGC+VD+L R G L EA   I +MPM+PN V+W +LL G + H +  + E     
Sbjct: 451 PSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKK 510

Query: 511 LIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVV 570
           LI++ P   G YV LSNIY+   +W++  ++R  MK++  +K    S IE  G++HEF+V
Sbjct: 511 LIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIEIDGIVHEFLV 570

Query: 571 GDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFG 630
           GDKSH  +++I++KL E+  +LKA GHVP T  VL  IE++ EKE  L  HSE+LA+AFG
Sbjct: 571 GDKSHWLSEKIYAKLDELGRELKAVGHVPTTEFVLFDIEEE-EKEHFLGYHSEKLAVAFG 629

Query: 631 LINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           LI       IR+VKNLRVC DCH   KL+S I  REII+RD +RFH F +GSCSC+D+W
Sbjct: 630 LIASPPNHVIRVVKNLRVCGDCHDAIKLISKITKREIIIRDTNRFHTFIDGSCSCRDYW 688


>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
 gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 620

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 250/608 (41%), Positives = 354/608 (58%), Gaps = 46/608 (7%)

Query: 124 TLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDL---GRRVF 180
           T+ C+     R    +E KQIH  + K G   D + ++  +S        D     + VF
Sbjct: 17  TMSCL----QRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVF 72

Query: 181 DAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------------P------------- 215
           D  D  D   WN +I G+    E E ++ L+  M            P             
Sbjct: 73  DGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFE 132

Query: 216 --------------DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYM 261
                         + D+++   L++ ++  G  ++A  +F R+P  + VSWN++I GY+
Sbjct: 133 ETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYV 192

Query: 262 KAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVS 321
           KAG +D A  LF  M  ++ I+W +MI+GY       EAL+L   M   DV P++ +L +
Sbjct: 193 KAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLAN 252

Query: 322 ALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKK 381
           ALSA A L  L +G+W+HSY+ K    +D VLG +LI MY+KCG +E AL VF+ I KK 
Sbjct: 253 ALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKS 312

Query: 382 VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFN 441
           V  WTA+I G   HG   +A+  F +M +MG+KP  ITF  VL ACS+ GLV +G+  F 
Sbjct: 313 VQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFY 372

Query: 442 MMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNK 501
            M  DY ++PTIEHYGC+VD+L R G L+EAK  I+ MP++PN VIW +LL   R H N 
Sbjct: 373 SMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNI 432

Query: 502 DIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEH 561
           ++GE     LI + P   G YV  +NI+A   +WDK +E R +MK++G  K PG S+I  
Sbjct: 433 ELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISL 492

Query: 562 RGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENH 621
            G  HEF+ GD+SHP+ ++I SK   MR KL+  G+VP+  ++LL + D  E+EA +  H
Sbjct: 493 EGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQH 552

Query: 622 SERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNG 681
           SE+LAI +GLI  K  + IRI+KNLRVC DCH VTKL+S IY R+I++RD +RFHHF++G
Sbjct: 553 SEKLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDG 612

Query: 682 SCSCKDFW 689
            CSC D+W
Sbjct: 613 KCSCGDYW 620



 Score =  152 bits (383), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 105/440 (23%), Positives = 202/440 (45%), Gaps = 74/440 (16%)

Query: 28  LKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINN-LHYARSIFDRILQHPS 86
           L+  S  +E +Q+HA  +KT L+  S   ++ LS  +    ++ L YA+ +FD     P 
Sbjct: 21  LQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDG-FDRPD 79

Query: 87  LVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHG 146
             L+NL+I+ +  +     +L L+  +L      + +T P ++K  + L A +E  QIH 
Sbjct: 80  TFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHA 139

Query: 147 LVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEV 206
            + KLG+  D + ++SL++ YA  G   L   +FD + + D VSWN +I GYVK G++++
Sbjct: 140 QITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDI 199

Query: 207 AMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWN------------ 254
           A+ LF +M +++  SWT ++ G+ +    + A ++F+ M N ++   N            
Sbjct: 200 ALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQ 259

Query: 255 ---------------------------AMINGYMKAGDVDSACELFDDMEIRDLITWNSM 287
                                       +I+ Y K G+++ A E+F +++ + +  W ++
Sbjct: 260 LGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTAL 319

Query: 288 IAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGF 347
           I+GY  +G   EA+     M    + PN  T  + L+A +   ++ +G+ +  Y ++  +
Sbjct: 320 ISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIF-YSMERDY 378

Query: 348 VVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNK 407
            +                             K  + H+  ++  LG  G+  +A     +
Sbjct: 379 NL-----------------------------KPTIEHYGCIVDLLGRAGLLDEAKRFIQE 409

Query: 408 MCRMGMKPTAITFIGVLNAC 427
              M +KP A+ +  +L AC
Sbjct: 410 ---MPLKPNAVIWGALLKAC 426


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 264/659 (40%), Positives = 396/659 (60%), Gaps = 29/659 (4%)

Query: 55  ISSRLLSLYVDP--HINNL-----------HYARSIFDRILQHPSLVLYNLLIKCYVFNQ 101
           I +RLL L++D   ++ NL           +Y++ +F ++ + P++ L+N +I+  V   
Sbjct: 35  IHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQV-KEPNIFLWNTMIRGLVSKD 93

Query: 102 RSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLS 161
              +A+ L+  +     LP+NFT+P V+K  AR   ++ G +IH L+ K G+  D FV +
Sbjct: 94  CFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKT 153

Query: 162 SLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR---- 217
           SL+S+Y K    D   +VFD + DK++VSW  +I GY+  G    A+  F ++ +     
Sbjct: 154 SLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKP 213

Query: 218 DLFSWTCLVDGFSKCGKVE-------IAREIFYRMPNRNLVSWNAMINGYMKAGDVDSAC 270
           D FS   LV   + C ++        I R I      RN+    ++++ Y+K G+++ A 
Sbjct: 214 DSFS---LVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERAN 270

Query: 271 ELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLA 330
            +F  M  +D+++W++MI GY  NG   +AL+L   M   ++ P+  T+V  LSA A L 
Sbjct: 271 LIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLG 330

Query: 331 VLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIV 390
            L+ G W  S + +N F+ + VLGT LI MYSKCGS+  A  +F A+ +K    W AM+V
Sbjct: 331 ALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKRKDRVVWNAMMV 390

Query: 391 GLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIE 450
           GL M+G A     LF+ + + G++P   TFIG+L  C+H G VN+GR++FN M   + + 
Sbjct: 391 GLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLT 450

Query: 451 PTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANN 510
           P+IEHYGC+VD+L R G L EA   I +MPM+PN V+W +LL G + H +  + E     
Sbjct: 451 PSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKK 510

Query: 511 LIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVV 570
           LI++ P   G YV LSNIY+   +W++  ++R  MK++  +K    S IE  G++HEF+V
Sbjct: 511 LIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIEIDGIVHEFLV 570

Query: 571 GDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFG 630
           GDKSH  +++I++KL E+  +LKA GHVP T  VL  IE++ EKE  L  HSE+LA+AFG
Sbjct: 571 GDKSHWLSEKIYAKLDELGRELKAVGHVPTTEFVLFDIEEE-EKEHFLGYHSEKLAVAFG 629

Query: 631 LINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           LI       IR+VKNLRVC DCH   KL+S I  REII+RD +RFH F +GSCSC+D+W
Sbjct: 630 LIASPPNHVIRVVKNLRVCGDCHDAIKLISKITKREIIIRDTNRFHTFIDGSCSCRDYW 688


>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 616

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 265/658 (40%), Positives = 396/658 (60%), Gaps = 66/658 (10%)

Query: 36  ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINN-LHYARSIFDRILQHPSLVLYNLLI 94
           E +Q+HA  +KTNL+ H    SRL++      ++  L YA S+F RI QHP+  ++  LI
Sbjct: 21  ELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVFSRI-QHPNSFIFFALI 79

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
           K +       E+L L+  +L            C                   L +  G  
Sbjct: 80  KGFSDTSNPVESLILYARMLS-----------C-------------------LNYSSGV- 108

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
             +F + S++    K    D GR+V                      G+V      FD  
Sbjct: 109 --EFSIPSVLKACGKLLAFDEGRQV---------------------HGQVLKTHLWFDP- 144

Query: 215 PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFD 274
                F    +V  +   G++E+AR +F RMPNR++VSWN+MI GY+KAG+++ A ++F+
Sbjct: 145 -----FVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELAKKVFE 199

Query: 275 DMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNK 334
            M  +D++TW SMI+ Y  N   M+AL+L   ML   + P+   +VS LSA+A L  + +
Sbjct: 200 TMSDKDVVTWTSMISAYVQNRCPMKALDLFREMLSLGLRPDGPAIVSVLSAIADLGFVEE 259

Query: 335 GRWMHSYIVKNGF-VVDGVLGTLLIQMYSKCGSIESALTVFRAIS-KKKVGHWTAMIVGL 392
           G+W+H+Y+  N   +  G +G+ LI MYSKCG IE+A  VFR+IS ++ +G W +MI GL
Sbjct: 260 GKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGL 319

Query: 393 GMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT 452
            +HG+A +ALD+F +M RM ++P  ITF+G+L+ CSH GLV +G+ YF  M   Y I P 
Sbjct: 320 AIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPR 379

Query: 453 IEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLI 512
           I+HYGC++D+  R G LE+A   I++MP   + + W ++LS +  HG+ +IG+ AA   I
Sbjct: 380 IQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAILSASMKHGHIEIGKSAALRAI 439

Query: 513 KVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGD 572
           ++APD    YV+LSNIYA AG+WD V+++R MM++RG +K  G SS+   G +HEF++G 
Sbjct: 440 ELAPDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGCSSMLVNGKVHEFLLGK 499

Query: 573 K-SHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGL 631
           +     + ++ +K++E+ ++LK  G+ PD TQVLL IED+  KE+ L  HSE++AIAFGL
Sbjct: 500 ELDSSYSGQVLAKIAEVVSRLKLQGYEPDLTQVLLDIEDEG-KESLLNLHSEKMAIAFGL 558

Query: 632 INVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           I++   +PI IVKNLRVC DCH   KL+S +YNR+II+RD +RFHHF+NG CSC ++W
Sbjct: 559 IHINKSAPIHIVKNLRVCCDCHCFMKLVSKVYNRQIIMRDQNRFHHFENGCCSCNEYW 616



 Score = 41.2 bits (95), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 47/230 (20%), Positives = 102/230 (44%), Gaps = 24/230 (10%)

Query: 35  KETQQLHALSVKTNLIYHSG-ISSRLLSLYVD-PHINNLHYARSIFDRILQHPSLVLYNL 92
           +E + LHA      +   SG I S L+ +Y    +I N ++   +F  I    ++  +N 
Sbjct: 258 EEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYH---VFRSISHRRNIGDWNS 314

Query: 93  LIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLG 152
           +I     +  + EAL +F ++    + P+  T   ++   +  G ++EG+      F   
Sbjct: 315 MISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQ------FYFE 368

Query: 153 FGFDKFVL-------SSLVSMYAKFGEIDLGRRVFDAMD-DKDLVSWNCLIDGYVKKGEV 204
              +K+ +         ++ ++ + G ++    V   M  + DL++W  ++   +K G +
Sbjct: 369 SMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAILSASMKHGHI 428

Query: 205 EV----AMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNL 250
           E+    A++  +  PD D  S+  L + ++K G+ +   +I   M  R +
Sbjct: 429 EIGKSAALRAIELAPD-DSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGV 477


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 250/624 (40%), Positives = 377/624 (60%), Gaps = 11/624 (1%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           A  +FDR+ +   LV +N +I  Y  N     AL L   + +    PD+ T+  ++   A
Sbjct: 229 AYKMFDRMPER-DLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVA 287

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
            +G+++ G+ IHG   + GF     V ++LV MY+K G +   R +FD M  K +VSWN 
Sbjct: 288 DVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNS 347

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGF----SKCGKVEIAREIFYRMPNRN 249
           +IDGYV+ G+   AM++F +M D  +      V G     +  G VE  R +   +    
Sbjct: 348 MIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLE 407

Query: 250 LVS----WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLE 305
           L S     N++I+ Y K   VD A E+F++++ + L++WN+MI GY  NGR  EA++   
Sbjct: 408 LGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFC 467

Query: 306 TMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCG 365
            M + ++ P+  T+VS + A+A L+VL + +W+H  +++     +  + T L+ MY+KCG
Sbjct: 468 KMQLQNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCG 527

Query: 366 SIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN 425
           ++ +A  +F  + ++ V  W AMI G G HG+   AL+LF KM +  +KP  +TF+ VL+
Sbjct: 528 AVHTARKLFDMMDERHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLS 587

Query: 426 ACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNF 485
           ACSH+GLV +G +YF  M  DYG+EP ++HYG +VD+L R   L EA   I+ MP+ P  
Sbjct: 588 ACSHSGLVEEGFQYFGSMKKDYGLEPAMDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAI 647

Query: 486 VIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMM 545
            ++ ++L   R H N ++GE AAN +  + PD  G +V+L+NIYA A  WDKV+ VR  M
Sbjct: 648 SVFGAMLGACRIHKNVELGEKAANRIFDLDPDDGGYHVLLANIYATASMWDKVARVRTTM 707

Query: 546 KKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVL 605
           +K+G +K PG S +E +  +H F  G  SHPQ  +I++ L  + N++KAAG++PDT  V 
Sbjct: 708 EKKGIQKTPGWSVVELQNEVHTFYSGTTSHPQAKKIYAFLETLGNRIKAAGYMPDTNSV- 766

Query: 606 LCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNR 665
             +ED   KE  L +HSE+LAIAF L+N    + I + KNLRVC DCH+ TK +S +  R
Sbjct: 767 HDVEDVV-KEQLLNSHSEKLAIAFSLLNTSPGTTIHLRKNLRVCGDCHNATKYISLVTKR 825

Query: 666 EIIVRDNSRFHHFKNGSCSCKDFW 689
           EIIVRD  RFHHFK+G+CSC D+W
Sbjct: 826 EIIVRDMRRFHHFKDGTCSCGDYW 849



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 117/407 (28%), Positives = 203/407 (49%), Gaps = 17/407 (4%)

Query: 137 AIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLID 196
           ++KE  Q   L+ K G   +    + LVS++ KFG +    RVF  ++DK    ++ ++ 
Sbjct: 89  SMKELHQFIPLIIKNGLYSEHLFQTKLVSLFCKFGSLHEAARVFQPIEDKIDELYHTMLK 148

Query: 197 GYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFS---KCGKVEIAREIFYRMPN 247
           GY +   ++ A+  F  M      P    F++   V G +   + GK EI  ++      
Sbjct: 149 GYARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKGK-EIHCQLIVNGFA 207

Query: 248 RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETM 307
            N+ +   ++N Y K   V+ A ++FD M  RDL+ WN++I+GY  NG    ALEL+  M
Sbjct: 208 SNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRM 267

Query: 308 LIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSI 367
                 P+  T+VS L AVA +  L  GR +H Y ++ GF     + T L+ MYSKCGS+
Sbjct: 268 QEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSV 327

Query: 368 ESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNAC 427
            +A  +F  ++ K V  W +MI G   +G    A+++F KM    ++ T +T +G L+AC
Sbjct: 328 GTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHAC 387

Query: 428 SHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVI 487
           +  G V  G R+ + +++   +   +     L+ +  +   ++ A    E++  +   V 
Sbjct: 388 ADLGDVEQG-RFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHK-TLVS 445

Query: 488 WMSLLSGARNHG--NKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAA 532
           W +++ G   +G  N+ I  +    L  + PD+   + ++S I A A
Sbjct: 446 WNAMILGYAQNGRINEAIDYFCKMQLQNIKPDS---FTMVSVIPALA 489


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 265/689 (38%), Positives = 395/689 (57%), Gaps = 38/689 (5%)

Query: 15  LQQHLPSR--LHWNILKFSSTHK----ETQQLHALSVKTNLI-YHSGISSRLLSLYVDPH 67
           L   +P R    WN++           + ++L  L  + +++ ++S +S    + YVD  
Sbjct: 102 LFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDE- 160

Query: 68  INNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPC 127
                 AR +FD + +  S + +N L+  YV N R  EA  LF    D  L+  N    C
Sbjct: 161 ------AREVFDNMPEKNS-ISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWN----C 209

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVL------SSLVSMYAKFGEIDLGRRVFD 181
           ++ G  R   + + + +          FDK  +      ++++S YA+ G +   RR+FD
Sbjct: 210 LMGGFVRKKKLGDARWL----------FDKMPVRDAISWNTMISGYAQGGGLSQARRLFD 259

Query: 182 AMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREI 241
               +D+ +W  ++ GYV+ G ++ A   FDEMP+++  S+  ++ G+ +  K++IARE+
Sbjct: 260 ESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIAREL 319

Query: 242 FYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEAL 301
           F  MP RN+ SWN MI GY + GD+  A + FD M  RD ++W ++IAGY  +G + EAL
Sbjct: 320 FESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEAL 379

Query: 302 EL-LETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQM 360
            + +E    G+ L N AT   ALS  A +A L  G+ +H   VK G+     +G  L+ M
Sbjct: 380 NMFVEIKQDGESL-NRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAM 438

Query: 361 YSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITF 420
           Y KCGSI+ A   F  I +K V  W  M+ G   HG   QAL +F  M   G+KP  IT 
Sbjct: 439 YFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITM 498

Query: 421 IGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP 480
           +GVL+ACSH GL++ G  YF  M  DYG+ PT +HY C++D+L R G LEEA+  I +MP
Sbjct: 499 VGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMP 558

Query: 481 MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSE 540
            +P    W +LL  +R HGN ++GE AA  + K+ P   G YV+LSN+YAA+G+W    +
Sbjct: 559 FQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADK 618

Query: 541 VREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPD 600
           +R  M+  G +K PG S +E +  +H F VGD SHP+ + I++ L E+  K++  G+V  
Sbjct: 619 MRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHPEKERIYAYLEELDLKMREEGYVSL 678

Query: 601 TTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLS 660
           T  VL  +E++ EKE  L+ HSE+LA+AFG++ +    PIR++KNLRVC DCHS  K +S
Sbjct: 679 TKLVLHDVEEE-EKEHMLKYHSEKLAVAFGILTIPGGRPIRVMKNLRVCEDCHSAIKHIS 737

Query: 661 GIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            I  R II+RD+ RFHHF  G CSC D+W
Sbjct: 738 KIVGRLIILRDSHRFHHFNEGFCSCGDYW 766



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 138/473 (29%), Positives = 220/473 (46%), Gaps = 35/473 (7%)

Query: 64  VDPHINNLH--YARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPD 121
           +  H+ N H   A  +F+ + +  S V YN +I  Y+ N + + A  LF  + +R L   
Sbjct: 56  ISTHMRNGHCDSALHVFNTMPRRSS-VSYNAMISGYLRNSKFNLARNLFDQMPERDLFSW 114

Query: 122 NFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFD 181
           N  L   ++   RLG  +        +F L    D    +SL+S YA+ G +D  R VFD
Sbjct: 115 NVMLTGYVRNC-RLGDARR-------LFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFD 166

Query: 182 AMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREI 241
            M +K+ +SWN L+  YV  G +E A  LF+   D DL SW CL+ GF +  K+  AR +
Sbjct: 167 NMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWL 226

Query: 242 FYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEAL 301
           F +MP R+ +SWN MI+GY + G +  A  LFD+   RD+ TW +M++GY  NG   EA 
Sbjct: 227 FDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAK 286

Query: 302 ELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMY 361
              + M        +   VS  + +AG  V  K   +   + ++    +      +I  Y
Sbjct: 287 TFFDEM-------PEKNEVSYNAMIAGY-VQTKKMDIARELFESMPCRNISSWNTMITGY 338

Query: 362 SKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFI 421
            + G I  A   F  + ++    W A+I G    G   +AL++F ++ + G      TF 
Sbjct: 339 GQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFG 398

Query: 422 GVLNACSHAGLVNDGRRYFNMMIN-DYGIEPTIEHYGCLVD-----ILCRTGYLEEAKST 475
             L+ C+    +  G++     +   YG        GC V      +  + G ++EA  T
Sbjct: 399 CALSTCADIAALELGKQIHGQAVKMGYGT-------GCFVGNALLAMYFKCGSIDEANDT 451

Query: 476 IESMPMRPNFVIWMSLLSGARNH--GNKDIGEYAANNLIKVAPDTIGCYVVLS 526
            E +  + + V W ++L+G   H  G + +  + +     V PD I    VLS
Sbjct: 452 FEGIEEK-DVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLS 503



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 154/678 (22%), Positives = 258/678 (38%), Gaps = 137/678 (20%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +Q+H  +VK        + + LL++Y      ++  A   F+ I +   +V +N ++  Y
Sbjct: 414 KQIHGQAVKMGYGTGCFVGNALLAMYFK--CGSIDEANDTFEGI-EEKDVVSWNTMLAGY 470

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
             +    +ALT+F  +    + PD  T+  V+   +  G +  G +              
Sbjct: 471 ARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEY------------- 517

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP-D 216
                  SM   +G I   +             + C+ID   + G +E A  L   MP  
Sbjct: 518 -----FYSMTKDYGVIPTSKH------------YTCMIDLLGRAGRLEEAQDLIRNMPFQ 560

Query: 217 RDLFSWTCLVDGFSKCGKVEI---AREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELF 273
               SW  L+      G  E+   A E+ ++M  +N   +  + N Y  +G    A ++ 
Sbjct: 561 PGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMR 620

Query: 274 DDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLN 333
             M  RD+      + GY     ++E    + T  +GD    +   + A      L +  
Sbjct: 621 SKM--RDIGV--QKVPGYS----WVEVQNKIHTFSVGDCSHPEKERIYAYLEELDLKMRE 672

Query: 334 KGRW--------------------MHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTV 373
           +G                       HS  +   F +  + G   I++       E   + 
Sbjct: 673 EGYVSLTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPGGRPIRVMKNLRVCEDCHSA 732

Query: 374 FRAISKKKVGHWTAMIVGLGMHGMATQALDLFNK-MCRMGMKPTAITFIGVLNACSHAGL 432
            + ISK         IVG  +    +     FN+  C  G        + V+    + GL
Sbjct: 733 IKHISK---------IVGRLIILRDSHRFHHFNEGFCSCGDYWLQFFLLVVI----YTGL 779

Query: 433 VNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLL 492
           ++ G  YF  M  +Y + PT +HY C++D+L R   LEE                  +LL
Sbjct: 780 LDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEEG-----------------ALL 822

Query: 493 SGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRK 552
             +R HGN ++GE AA    K+ P   G                 +S++R++    G +K
Sbjct: 823 GASRIHGNTELGEKAAQMFFKMGPQNSG-----------------ISKMRDV----GVQK 861

Query: 553 DPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQK 612
            PG S  E +  +H F VG     + + I   L E+  K++      + T          
Sbjct: 862 VPGYSWFEVQNKIHTFSVGLFLSRERENI-GFLEELDLKMREREEEKERT---------- 910

Query: 613 EKEAELENHSERLAIAFGLINVKSRSPIRIVKN-LRVCNDCHSVTKLLSGIYNREIIVRD 671
                L+  SE LA A G++ +    P R++K  + VC DC S  K +S I  R I +RD
Sbjct: 911 -----LKYLSENLAAALGILTIPVGRPNRVMKKRVYVCEDCRSAIKHMSKIVGRLITLRD 965

Query: 672 NSRFHHFKNGSCSCKDFW 689
           +   H F    CSC ++W
Sbjct: 966 S---HRFNESICSCGEYW 980



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 83/369 (22%), Positives = 151/369 (40%), Gaps = 85/369 (23%)

Query: 244 RMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALEL 303
           R+ + +++ WN  I+ +M+ G  DSA  +F+ M  R  +++N+MI+GY  N +F  A  L
Sbjct: 43  RVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNL 102

Query: 304 LE-----------TMLIG--------------DVLPNDATLV--SALSAVAGLAVLNKGR 336
            +            ML G              D++P    +   S LS  A    +++ R
Sbjct: 103 FDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAR 162

Query: 337 WMHSYIV-KNGFVVDGVLGTLLIQMYSKCGSIESALTVFRA----------------ISK 379
            +   +  KN    +G+L       Y   G IE A  +F +                + K
Sbjct: 163 EVFDNMPEKNSISWNGLLAA-----YVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRK 217

Query: 380 KKVG---------------HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT--AITFIG 422
           KK+G                W  MI G    G  +QA  LF++       PT    T+  
Sbjct: 218 KKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDE------SPTRDVFTWTA 271

Query: 423 VLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMR 482
           +++     G++++ + +F+ M      E     Y  ++    +T  ++ A+   ESMP R
Sbjct: 272 MVSGYVQNGMLDEAKTFFDEM-----PEKNEVSYNAMIAGYVQTKKMDIARELFESMPCR 326

Query: 483 PNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAP--DTIGCYVVLSNIYAAAGQWDKVSE 540
            N   W ++++G    G  DI +  A     + P  D +    +++  YA +G +++   
Sbjct: 327 -NISSWNTMITGYGQIG--DIAQ--ARKFFDMMPQRDCVSWAAIIAG-YAQSGHYEEALN 380

Query: 541 VREMMKKRG 549
           +   +K+ G
Sbjct: 381 MFVEIKQDG 389


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 262/663 (39%), Positives = 387/663 (58%), Gaps = 13/663 (1%)

Query: 36  ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIK 95
           + +Q H L ++  L  H       L L    H     YA  +F +   HP++ LYN LI+
Sbjct: 18  QAKQCHCLLLRLGL--HQDTYLINLLLRSSLHFAATQYATVVFAQT-PHPNIFLYNTLIR 74

Query: 96  CYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLG-AIKEGKQIHGLVFKLGFG 154
             V N    +A++++  +      PDNFT P V+K   RL      G  +H LV K GF 
Sbjct: 75  GMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKTGFD 134

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFD-- 212
           +D FV + LV +Y+K G +   R+VFD + +K++VSW  +I GY++ G    A+ LF   
Sbjct: 135 WDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLFRGL 194

Query: 213 -EMPDR-DLFSWTCLVDGFSKCGKVEIAREIFYRMPNR----NLVSWNAMINGYMKAGDV 266
            EM  R D F+   ++   S+ G +   R I   M       N+    ++++ Y K G +
Sbjct: 195 LEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVATSLVDMYAKCGSM 254

Query: 267 DSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326
           + A  +FD M  +D++ W+++I GY  NG   EAL++   M   +V P+   +V   SA 
Sbjct: 255 EEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSAC 314

Query: 327 AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWT 386
           + L  L  G W    +  + F+ + VLGT LI  Y+KCGS+  A  VF+ + +K    + 
Sbjct: 315 SRLGALELGNWARGLMDGDEFLSNPVLGTALIDFYAKCGSVAQAKEVFKGMRRKDCVVFN 374

Query: 387 AMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIND 446
           A+I GL M G    A  +F +M ++GM+P   TF+G+L  C+HAGLV+DG RYF+ M + 
Sbjct: 375 AVISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGLLCGCTHAGLVDDGHRYFSGMSSV 434

Query: 447 YGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEY 506
           + + PTIEHYGC+VD+  R G L EA+  I SMPM  N ++W +LL G R H +  + E+
Sbjct: 435 FSVTPTIEHYGCMVDLQARAGLLVEAQDLIRSMPMEANSIVWGALLGGCRLHKDTQLAEH 494

Query: 507 AANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLH 566
               LI++ P   G YV+LSNIY+A+ +WD+  ++R  + ++G +K PG S +E  GV+H
Sbjct: 495 VLKQLIELEPWNSGHYVLLSNIYSASHRWDEAEKIRSSLNQKGMQKLPGCSWVEVDGVVH 554

Query: 567 EFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLA 626
           EF+VGD SHP + +I+ KL  +   L+ AG+ P T  VL  +E++ EKE  L  HSE+LA
Sbjct: 555 EFLVGDTSHPLSHKIYEKLESLFKDLREAGYNPTTEFVLFDVEEE-EKEYFLGCHSEKLA 613

Query: 627 IAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCK 686
           +AF LI+  ++  IR+VKNLRVC DCH   KL+S +  REIIVRDN+RFHHF  GSCSC+
Sbjct: 614 VAFALISTGAKDVIRVVKNLRVCGDCHEAIKLVSKVTGREIIVRDNNRFHHFTEGSCSCR 673

Query: 687 DFW 689
           D+W
Sbjct: 674 DYW 676



 Score = 46.2 bits (108), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 47/223 (21%), Positives = 95/223 (42%), Gaps = 25/223 (11%)

Query: 328 GLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTA 387
           GL  L++ +  H  +++ G   D  L  LL++      + + A  VF       +  +  
Sbjct: 12  GLKSLHQAKQCHCLLLRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQTPHPNIFLYNT 71

Query: 388 MIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACS------HAGLVNDGRRYFN 441
           +I G+  +     A+ ++  M + G  P   TF  VL AC+      H GL        +
Sbjct: 72  LIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLS------LH 125

Query: 442 MMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG-- 499
            ++   G +  +     LV +  + G+L +A+   + +P + N V W +++ G    G  
Sbjct: 126 SLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEK-NVVSWTAIICGYIESGCF 184

Query: 500 NKDIGEYAANNLIKVAPDTIGCYVVLSNIYA-------AAGQW 535
            + +G +     + + PD+   + ++  +YA       A+G+W
Sbjct: 185 GEALGLFRGLLEMGLRPDS---FTLVRILYACSRVGDLASGRW 224


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 265/689 (38%), Positives = 395/689 (57%), Gaps = 38/689 (5%)

Query: 15  LQQHLPSR--LHWNILKFSSTHK----ETQQLHALSVKTNLI-YHSGISSRLLSLYVDPH 67
           L   +P R    WN++           + ++L  L  + +++ ++S +S    + YVD  
Sbjct: 102 LFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDE- 160

Query: 68  INNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPC 127
                 AR +FD + +  S + +N L+  YV N R  EA  LF    D  L+  N    C
Sbjct: 161 ------AREVFDNMPEKNS-ISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWN----C 209

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVL------SSLVSMYAKFGEIDLGRRVFD 181
           ++ G  R   + + + +          FDK  +      ++++S YA+ G +   RR+FD
Sbjct: 210 LMGGFVRKKKLGDARWL----------FDKMPVRDAISWNTMISGYAQGGGLSQARRLFD 259

Query: 182 AMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREI 241
               +D+ +W  ++ GYV+ G ++ A   FDEMP+++  S+  ++ G+ +  K++IARE+
Sbjct: 260 ESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIAREL 319

Query: 242 FYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEAL 301
           F  MP RN+ SWN MI GY + GD+  A + FD M  RD ++W ++IAGY  +G + EAL
Sbjct: 320 FESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEAL 379

Query: 302 EL-LETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQM 360
            + +E    G+ L N AT   ALS  A +A L  G+ +H   VK G+     +G  L+ M
Sbjct: 380 NMFVEIKQDGESL-NRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAM 438

Query: 361 YSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITF 420
           Y KCGSI+ A   F  I +K V  W  M+ G   HG   QAL +F  M   G+KP  IT 
Sbjct: 439 YFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITM 498

Query: 421 IGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP 480
           +GVL+ACSH GL++ G  YF  M  DYG+ PT +HY C++D+L R G LEEA+  I +MP
Sbjct: 499 VGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMP 558

Query: 481 MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSE 540
            +P    W +LL  +R HGN ++GE AA  + K+ P   G YV+LSN+YAA+G+W    +
Sbjct: 559 FQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADK 618

Query: 541 VREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPD 600
           +R  M+  G +K PG S +E +  +H F VGD SHP+ + I++ L E+  K++  G+V  
Sbjct: 619 MRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHPEKERIYAYLEELDLKMREEGYVSL 678

Query: 601 TTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLS 660
           T  VL  +E++ EKE  L+ HSE+LA+AFG++ +    PIR++KNLRVC DCHS  K +S
Sbjct: 679 TKLVLHDVEEE-EKEHMLKYHSEKLAVAFGILTIPGGRPIRVMKNLRVCEDCHSAIKHIS 737

Query: 661 GIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            I  R II+RD+ RFHHF  G CSC D+W
Sbjct: 738 KIVGRLIILRDSHRFHHFNEGFCSCGDYW 766



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 138/473 (29%), Positives = 220/473 (46%), Gaps = 35/473 (7%)

Query: 64  VDPHINNLH--YARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPD 121
           +  H+ N H   A  +F+ + +  S V YN +I  Y+ N + + A  LF  + +R L   
Sbjct: 56  ISTHMRNGHCDSALHVFNTMPRRSS-VSYNAMISGYLRNSKFNLARNLFDQMPERDLFSW 114

Query: 122 NFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFD 181
           N  L   ++   RLG  +        +F L    D    +SL+S YA+ G +D  R VFD
Sbjct: 115 NVMLTGYVRNC-RLGDARR-------LFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFD 166

Query: 182 AMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREI 241
            M +K+ +SWN L+  YV  G +E A  LF+   D DL SW CL+ GF +  K+  AR +
Sbjct: 167 NMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWL 226

Query: 242 FYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEAL 301
           F +MP R+ +SWN MI+GY + G +  A  LFD+   RD+ TW +M++GY  NG   EA 
Sbjct: 227 FDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAK 286

Query: 302 ELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMY 361
              + M        +   VS  + +AG  V  K   +   + ++    +      +I  Y
Sbjct: 287 TFFDEM-------PEKNEVSYNAMIAGY-VQTKKMDIARELFESMPCRNISSWNTMITGY 338

Query: 362 SKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFI 421
            + G I  A   F  + ++    W A+I G    G   +AL++F ++ + G      TF 
Sbjct: 339 GQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFG 398

Query: 422 GVLNACSHAGLVNDGRRYFNMMIN-DYGIEPTIEHYGCLVD-----ILCRTGYLEEAKST 475
             L+ C+    +  G++     +   YG        GC V      +  + G ++EA  T
Sbjct: 399 CALSTCADIAALELGKQIHGQAVKMGYGT-------GCFVGNALLAMYFKCGSIDEANDT 451

Query: 476 IESMPMRPNFVIWMSLLSGARNH--GNKDIGEYAANNLIKVAPDTIGCYVVLS 526
            E +  + + V W ++L+G   H  G + +  + +     V PD I    VLS
Sbjct: 452 FEGIEEK-DVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLS 503



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 83/369 (22%), Positives = 151/369 (40%), Gaps = 85/369 (23%)

Query: 244 RMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALEL 303
           R+ + +++ WN  I+ +M+ G  DSA  +F+ M  R  +++N+MI+GY  N +F  A  L
Sbjct: 43  RVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNL 102

Query: 304 LE-----------TMLIG--------------DVLPNDATLV--SALSAVAGLAVLNKGR 336
            +            ML G              D++P    +   S LS  A    +++ R
Sbjct: 103 FDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAR 162

Query: 337 WMHSYIV-KNGFVVDGVLGTLLIQMYSKCGSIESALTVFRA----------------ISK 379
            +   +  KN    +G+L       Y   G IE A  +F +                + K
Sbjct: 163 EVFDNMPEKNSISWNGLLAA-----YVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRK 217

Query: 380 KKVG---------------HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT--AITFIG 422
           KK+G                W  MI G    G  +QA  LF++       PT    T+  
Sbjct: 218 KKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDE------SPTRDVFTWTA 271

Query: 423 VLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMR 482
           +++     G++++ + +F+ M      E     Y  ++    +T  ++ A+   ESMP R
Sbjct: 272 MVSGYVQNGMLDEAKTFFDEM-----PEKNEVSYNAMIAGYVQTKKMDIARELFESMPCR 326

Query: 483 PNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAP--DTIGCYVVLSNIYAAAGQWDKVSE 540
            N   W ++++G    G  DI +  A     + P  D +    +++  YA +G +++   
Sbjct: 327 -NISSWNTMITGYGQIG--DIAQ--ARKFFDMMPQRDCVSWAAIIAG-YAQSGHYEEALN 380

Query: 541 VREMMKKRG 549
           +   +K+ G
Sbjct: 381 MFVEIKQDG 389


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 254/673 (37%), Positives = 400/673 (59%), Gaps = 22/673 (3%)

Query: 31  SSTHK-ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVL 89
           SSTHK + +Q+HA  +   L +   + ++L+  +      ++ +AR +FD  L  P +  
Sbjct: 30  SSTHKAQLRQIHARLLVLGLQFSGFLITKLI--HASSSYGDITFARQVFDD-LPRPQVFP 86

Query: 90  YNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVF 149
           +N +I+ Y  N    +AL ++  +    + PD+FT P ++K    L  ++ G+ +H  VF
Sbjct: 87  WNAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVF 146

Query: 150 KLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD--DKDLVSWNCLIDGYVKKGEVEVA 207
           +LGF  D FV + L+++YAK   +   R VF+ +   ++ +VSW  ++  Y + GE   A
Sbjct: 147 RLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEA 206

Query: 208 MKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNRNL-------VSWNAM 256
           +++F +M   D+     +   +++ F+    +E  R I   +    L       +S N M
Sbjct: 207 LEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLLISLNTM 266

Query: 257 INGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPND 316
              Y K G V +A  LFD M+  +LI WN+MI+GY  NG   +A++L   M+  DV P+ 
Sbjct: 267 ---YAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDT 323

Query: 317 ATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRA 376
            ++ SA+SA A +  L + RWM  Y+ ++ +  D  + + LI M++KCGS+E A +VF  
Sbjct: 324 ISITSAISACAQVGSLEQARWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECARSVFDR 383

Query: 377 ISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDG 436
              + V  W+AMIVG G+HG A +A+ L+  M R G+ P  +TF+G+L AC+H+G+V +G
Sbjct: 384 TLDRDVVVWSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVTFLGLLIACNHSGMVREG 443

Query: 437 RRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGAR 496
             +FN M  D+ I P  +HY C++D+L R G+L++A   I+ MP++P   +W +LLS  +
Sbjct: 444 WWFFNRMA-DHKINPQQQHYACIIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACK 502

Query: 497 NHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGS 556
            H + ++G+YAA  L  + P   G YV LSN+YAAA  WD+V+EVR  MK++G  KD G 
Sbjct: 503 KHRHVELGKYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGC 562

Query: 557 SSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEA 616
           S +E RG L  F VGDKSHP+ +EI  ++  + ++LK  G V +    L  + D+ E E 
Sbjct: 563 SWVEVRGRLEGFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDE-EAEE 621

Query: 617 ELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFH 676
            L +HSER+ IA+GLI+    + +RI KNLR C +CH+ TKL+S +  REI+VRD +RFH
Sbjct: 622 TLCSHSERITIAYGLISTPQGTTLRITKNLRACVNCHAATKLISKLVGREIVVRDTNRFH 681

Query: 677 HFKNGSCSCKDFW 689
           HFK+G CSC D+W
Sbjct: 682 HFKDGVCSCGDYW 694


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 256/680 (37%), Positives = 388/680 (57%), Gaps = 27/680 (3%)

Query: 20  PSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFD 79
           P+ L+W            +++H   ++  L   + + + L+S+Y      ++  AR +FD
Sbjct: 142 PAVLNWG-----------REIHVRVMEAGLANDTTVGNALISMYAK--CGSVRDARRVFD 188

Query: 80  RILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIK 139
            +      V +  L   Y  +    E+L  +  +L   + P   T   V+     L A++
Sbjct: 189 AMASRDE-VSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALE 247

Query: 140 EGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYV 199
           +GKQIH  + +  +  D  V ++L  MY K G     R VF+ +  +D+++WN +I G+V
Sbjct: 248 KGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFV 307

Query: 200 KKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS- 252
             G++E A   F  M      PDR   ++T ++   ++ G +   +EI  R     LVS 
Sbjct: 308 DSGQLEEAHGTFHRMLEEGVAPDRA--TYTTVLSACARPGGLARGKEIHARAAKDGLVSD 365

Query: 253 ---WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLI 309
               NA+IN Y KAG +  A ++FD M  RD+++W +++  Y    + +E+    + ML 
Sbjct: 366 VRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQ 425

Query: 310 GDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIES 369
             V  N  T +  L A +    L  G+ +H+ +VK G + D  +   L+ MY KCGS+E 
Sbjct: 426 QGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLADLAVTNALMSMYFKCGSVED 485

Query: 370 ALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSH 429
           A+ VF  +S + V  W  +I GLG +G   +AL  +  M   GM+P A TF+ VL+AC  
Sbjct: 486 AIRVFEGMSMRDVVTWNTLIGGLGQNGRGLEALQRYEVMKSEGMRPNAATFVNVLSACRV 545

Query: 430 AGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWM 489
             LV +GRR F  M  DYGI PT +HY C+VDIL R G+L EA+  I ++P++P+  +W 
Sbjct: 546 CNLVEEGRRQFAFMSKDYGIVPTEKHYACMVDILARAGHLREAEDVILTIPLKPSAAMWG 605

Query: 490 SLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRG 549
           +LL+  R H N +IGE AA + +K+ P   G YV LS IYAAAG W  V+++R+ MK+RG
Sbjct: 606 ALLAACRIHCNVEIGERAAEHCLKLEPQNAGLYVSLSAIYAAAGMWRDVAKLRKFMKERG 665

Query: 550 FRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIE 609
            +K+PG S IE  G +H FV  D+SHP+T EI+++L  ++ ++K+ G+VPDT  V+  ++
Sbjct: 666 VKKEPGRSWIEIAGEVHSFVARDQSHPRTQEIYAELETLKKQMKSLGYVPDTRFVMHDLD 725

Query: 610 DQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIV 669
           D+  KE  + +HSE+LAIA+GLI+    +PIRI KNLRVC DCH+ TK +S I  REII 
Sbjct: 726 DEG-KERAVCHHSEKLAIAYGLISTPPGTPIRISKNLRVCTDCHTATKFISKITKREIIA 784

Query: 670 RDNSRFHHFKNGSCSCKDFW 689
           RD  RFHHFKNG CSC D+W
Sbjct: 785 RDAHRFHHFKNGECSCGDYW 804



 Score =  212 bits (540), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 142/470 (30%), Positives = 231/470 (49%), Gaps = 13/470 (2%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +Q+H   ++  +  +  I++ LL LY   H  +++ AR +FD+   + S+V +N++I  Y
Sbjct: 48  KQVHEHILRCGVKPNVYITNTLLKLYA--HCGSVNEARQLFDK-FSNKSVVSWNVMISGY 104

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
                + EA  LF  +    L PD FT   ++   +    +  G++IH  V + G   D 
Sbjct: 105 AHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLANDT 164

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM-PD 216
            V ++L+SMYAK G +   RRVFDAM  +D VSW  L   Y + G  E ++K +  M  +
Sbjct: 165 TVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQE 224

Query: 217 RDLFSWTCLVDGFSKCGKV-------EIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSA 269
           R   S    ++  S CG +       +I   I     + ++    A+   YMK G    A
Sbjct: 225 RVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDA 284

Query: 270 CELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGL 329
            E+F+ +  RD+I WN+MI G+  +G+  EA      ML   V P+ AT  + LSA A  
Sbjct: 285 REVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARP 344

Query: 330 AVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMI 389
             L +G+ +H+   K+G V D   G  LI MYSK GS++ A  VF  + K+ V  WT ++
Sbjct: 345 GGLARGKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLL 404

Query: 390 VGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGI 449
                     ++   F +M + G+K   IT++ VL ACS+   +  G+     ++   G+
Sbjct: 405 GRYADCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKA-GL 463

Query: 450 EPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
              +     L+ +  + G +E+A    E M MR + V W +L+ G   +G
Sbjct: 464 LADLAVTNALMSMYFKCGSVEDAIRVFEGMSMR-DVVTWNTLIGGLGQNG 512



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 110/380 (28%), Positives = 192/380 (50%), Gaps = 10/380 (2%)

Query: 121 DNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVF 180
           D++    +++   +   +  GKQ+H  + + G   + ++ ++L+ +YA  G ++  R++F
Sbjct: 27  DSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQLF 86

Query: 181 DAMDDKDLVSWNCLIDGYVKKGEVEVAMKLF----DEMPDRDLFSWTCLVDGFSKCGKVE 236
           D   +K +VSWN +I GY  +G  + A  LF     E  + D F++  ++   S    + 
Sbjct: 87  DKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLN 146

Query: 237 IAREIFYRMPNRNLVS----WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYE 292
             REI  R+    L +     NA+I+ Y K G V  A  +FD M  RD ++W ++   Y 
Sbjct: 147 WGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYA 206

Query: 293 LNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV 352
            +G   E+L+    ML   V P+  T ++ LSA   LA L KG+ +H++IV++ +  D  
Sbjct: 207 ESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVR 266

Query: 353 LGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG 412
           + T L +MY KCG+ + A  VF  +S + V  W  MI G    G   +A   F++M   G
Sbjct: 267 VSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEG 326

Query: 413 MKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEA 472
           + P   T+  VL+AC+  G +  G+        D G+   +     L+++  + G +++A
Sbjct: 327 VAPDRATYTTVLSACARPGGLARGKEIHARAAKD-GLVSDVRFGNALINMYSKAGSMKDA 385

Query: 473 KSTIESMPMRPNFVIWMSLL 492
           +   + MP R + V W +LL
Sbjct: 386 RQVFDRMPKR-DVVSWTTLL 404



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 97/377 (25%), Positives = 174/377 (46%), Gaps = 32/377 (8%)

Query: 204 VEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM------PNRNLVSWNAMI 257
            +V   L  + P  D + +  L+    K   + + +++   +      PN  +   N ++
Sbjct: 13  ADVLQYLHRKGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYIT--NTLL 70

Query: 258 NGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDA 317
             Y   G V+ A +LFD    + +++WN MI+GY   G   EA  L   M    + P+  
Sbjct: 71  KLYAHCGSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKF 130

Query: 318 TLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAI 377
           T VS LSA +  AVLN GR +H  +++ G   D  +G  LI MY+KCGS+  A  VF A+
Sbjct: 131 TFVSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAM 190

Query: 378 SKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGR 437
           + +    WT +       G   ++L  ++ M +  ++P+ IT++ VL+AC     +  G+
Sbjct: 191 ASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGK 250

Query: 438 R-YFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGAR 496
           + + +++ ++Y  +  +     L  +  + G  ++A+   E +  R + + W +++ G  
Sbjct: 251 QIHAHIVESEYHSDVRVS--TALTKMYMKCGAFKDAREVFECLSYR-DVIAWNTMIRGFV 307

Query: 497 NHGNKDIGEYAANNLIK--VAPDTIGCYVVLS------------NIYAAAGQWDKVSEVR 542
           + G  +      + +++  VAPD      VLS             I+A A +   VS+VR
Sbjct: 308 DSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVR 367

Query: 543 ------EMMKKRGFRKD 553
                  M  K G  KD
Sbjct: 368 FGNALINMYSKAGSMKD 384


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 247/630 (39%), Positives = 373/630 (59%), Gaps = 48/630 (7%)

Query: 91  NLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFK 150
           N LI C+       +A    C + +   + D+ +   ++ G   +G ++E K I+  + +
Sbjct: 252 NTLINCFSVCSNMTDA----CRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPE 307

Query: 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
                     +S++ ++   G +    ++FD M +KD+V+W+ LI  + +    E A++ 
Sbjct: 308 RSI----IASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRT 363

Query: 211 F----------DEMPDRDLFS-----------------------------WTCLVDGFSK 231
           F          DE+      S                                L+  +SK
Sbjct: 364 FVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSK 423

Query: 232 CGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGY 291
           CG + +AR++F      +L+SWN+MI+GY+K   VD+A  +FD M  +D+++W+SMI+GY
Sbjct: 424 CGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGY 483

Query: 292 ELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDG 351
             N  F E L L + M +    P++ TLVS +SA A LA L +G+W+H+YI +NG  ++ 
Sbjct: 484 AQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINV 543

Query: 352 VLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRM 411
           +LGT LI MY KCG +E+AL VF  + +K +  W A+I+GL M+G+   +LD+F+ M + 
Sbjct: 544 ILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKC 603

Query: 412 GMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEE 471
            + P  ITF+GVL AC H GLV++G+ +F  MI+D+ I+P ++HYGC+VD+L R G L+E
Sbjct: 604 HVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQE 663

Query: 472 AKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAA 531
           A+  +  MPM P+   W +LL   + HG+ ++G      LI++ PD  G +V+LSNIYA+
Sbjct: 664 AEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYAS 723

Query: 532 AGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNK 591
            G+WD V E+R MM K    K PG S IE  GV+HEF+ GDK+HP  D I   L EM  K
Sbjct: 724 KGKWDDVLEIRGMMTKHRVLKIPGCSMIEANGVIHEFLAGDKTHPDMDAIEDMLVEMAMK 783

Query: 592 LKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCND 651
           LK  G+ PD  +VLL + D++EKE+ L  HSE+LAIAFGLIN+   +PIRI+KNLR+CND
Sbjct: 784 LKLEGYTPDINEVLLDV-DEEEKESTLFRHSEKLAIAFGLINISPPTPIRIMKNLRICND 842

Query: 652 CHSVTKLLSGIYNREIIVRDNSRFHHFKNG 681
           CH+  KL+S  + R+I+VRD  RFHHF+ G
Sbjct: 843 CHTAAKLISKAFCRKIVVRDRHRFHHFEQG 872



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 135/528 (25%), Positives = 227/528 (42%), Gaps = 106/528 (20%)

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
           + Y+     H A TL+  +L  +L  DN+T P +I+  +   +  E KQ+H  V KLGF 
Sbjct: 186 RAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFD 245

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
            D +V ++L++ ++    +    RVF+     D VSWN ++ GY++ G VE A  ++ +M
Sbjct: 246 SDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQM 305

Query: 215 PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFD 274
           P+R + +   ++  F   G V  A ++F  M  +++V+W+A+I           AC    
Sbjct: 306 PERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALI-----------AC---- 350

Query: 275 DMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNK 334
                           ++ N  + EA+     M    V+ ++   VSALSA A L V+N 
Sbjct: 351 ----------------FQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNM 394

Query: 335 GRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSI--------------------------- 367
           G+ +HS  +K G      L   LI MYSKCG I                           
Sbjct: 395 GKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLK 454

Query: 368 ----ESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGV 423
               ++A  +F ++ +K V  W++MI G   + +  + L LF +M   G KP   T + V
Sbjct: 455 CNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSV 514

Query: 424 LNACSHAGLVNDGR------RYFNMMIND-----------------------YG-IEPTI 453
           ++AC+    +  G+      +   + IN                        YG IE  I
Sbjct: 515 ISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGI 574

Query: 454 EHYGCLVDILCRTGYLEEAKSTIESMP---MRPNFVIWMSLLSGARNHGNKDIGEYAANN 510
             +  L+  L   G +E +     +M    + PN + +M +L   R+ G  D G++   +
Sbjct: 575 STWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYS 634

Query: 511 LI---KVAPDT--IGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKD 553
           +I   K+ P+    GC V L       G+  K+ E  E++ +     D
Sbjct: 635 MIHDHKIQPNVKHYGCMVDL------LGRAGKLQEAEELLNRMPMTPD 676



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 103/404 (25%), Positives = 177/404 (43%), Gaps = 73/404 (18%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           A  +FD +L+   +V ++ LI C+  N+   EA+  F  +    ++ D       +   A
Sbjct: 329 ACKLFDEMLEK-DMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACA 387

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
            L  +  GK IH L  K+G      + ++L+ MY+K G+I + R++FD     DL+SWN 
Sbjct: 388 NLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNS 447

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM------PN 247
           +I GY+K   V+ A  +FD MP++D+ SW+ ++ G+++    +    +F  M      P+
Sbjct: 448 MISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPD 507

Query: 248 R---------------------------------NLVSWNAMINGYMKAGDVDSACELFD 274
                                             N++    +I+ YMK G V++A E+F 
Sbjct: 508 ETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFY 567

Query: 275 DMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNK 334
            M  + + TWN++I G  +NG    +L++   M    V PN+ T +  L A   + ++++
Sbjct: 568 GMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDE 627

Query: 335 GRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGM 394
           G+  H Y + +   +                             +  V H+  M+  LG 
Sbjct: 628 GQ-HHFYSMIHDHKI-----------------------------QPNVKHYGCMVDLLGR 657

Query: 395 HGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR 438
            G   +A +L N   RM M P   T+  +L AC   G    GRR
Sbjct: 658 AGKLQEAEELLN---RMPMTPDVATWGALLGACKKHGDSEMGRR 698


>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 678

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 261/674 (38%), Positives = 397/674 (58%), Gaps = 10/674 (1%)

Query: 24  HWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQ 83
           +W I       K  +  H   ++ NL + + + S +L   ++   NN  Y   +F +   
Sbjct: 7   NWCIASGLKCLKHAKLAHCRLLRLNLHHDNDLLSIILRSTIN-FSNNAQYPILVFHKTPT 65

Query: 84  HPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQ 143
           + +  LYN +I+  V   R + A+ L+  +    ++PD+FT   V+K  ARL     G  
Sbjct: 66  NSNTFLYNTMIRGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACARLNLFHLGVM 125

Query: 144 IHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGE 203
           IH LVFK GF  D FV +++V  Y+K G +    +VFD M  K++VSW  +I G ++ G+
Sbjct: 126 IHSLVFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIEFGK 185

Query: 204 VEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMP----NRNLVSWNA 255
              A+ LF  + +  L    F    ++   ++ G +E  R I   M     +RN+    +
Sbjct: 186 FREAVDLFRGLLESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMRECGLSRNVFVATS 245

Query: 256 MINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPN 315
           +++ Y K G ++ A  +FD M  +D++ W++MI GY  NG   EA+EL   M   +V P+
Sbjct: 246 LVDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMRKVNVRPD 305

Query: 316 DATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFR 375
              +V ALS+ A L  L  G W    +    F+ + VLGT LI  Y+KCGS+E AL V++
Sbjct: 306 CYAMVGALSSCASLGALELGNWAKGLMNYEEFLSNPVLGTSLIDFYAKCGSMEEALGVYK 365

Query: 376 AISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVND 435
            + +K    + A+I GL M+G    A  +F +M + G+ P   TF+G+L  C+HAGLV+D
Sbjct: 366 MMKEKDRVVFNAVISGLAMYGQVGAAFGVFGQMGKFGIPPNEHTFVGLLCGCTHAGLVDD 425

Query: 436 GRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGA 495
           GR YFN M +D+ + PTIEHYGC+VD+L R G+L+EA + I+ MPM+ N ++W SLL G 
Sbjct: 426 GRHYFNSMSHDFSVTPTIEHYGCMVDLLARAGFLDEAHNLIKGMPMKANVIVWGSLLGGC 485

Query: 496 RNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPG 555
           R H    + E+    LI++ P   G YV+LSNIY+A+ +WD+  ++R  + ++G +K PG
Sbjct: 486 RLHRETQLAEHVLKQLIELEPWNSGHYVLLSNIYSASRRWDEAEKIRSTVNEKGMQKLPG 545

Query: 556 SSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKE 615
            S +E  GV+HEF+VGD SHP + +I+ KL  +   LK AG+ P T  VL  +E++ EKE
Sbjct: 546 YSWVEVDGVVHEFLVGDTSHPLSQKIYEKLESLFKDLKEAGYNPTTEFVLFDVEEE-EKE 604

Query: 616 AELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRF 675
             L  HSE+LA+AF LI+  ++  IR+VKNLRVC DCH   K +S +  REI++RDN+RF
Sbjct: 605 HFLGCHSEKLAVAFALISTGAKYVIRVVKNLRVCGDCHEAIKHISKVTGREIVIRDNNRF 664

Query: 676 HHFKNGSCSCKDFW 689
           H F +G+CSC+D+W
Sbjct: 665 HCFSDGACSCRDYW 678


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 249/632 (39%), Positives = 380/632 (60%), Gaps = 14/632 (2%)

Query: 59  LLSLYV-DPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRF 117
           +LS YV   H++    AR +FDR + H + + +N L+  YV + R  EA  LF    D  
Sbjct: 132 MLSGYVRSGHVDE---ARDVFDR-MPHKNSISWNGLLAAYVRSGRLEEARRLFESKSDWE 187

Query: 118 LLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGR 177
           L+  N    C++ G  +   + + +Q+    F      D    ++++S YA+ G++   R
Sbjct: 188 LISCN----CLMGGYVKRNMLGDARQL----FDQIPVRDLISWNTMISGYAQDGDLSQAR 239

Query: 178 RVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEI 237
           R+F+    +D+ +W  ++  YV+ G ++ A ++FDEMP +   S+  ++ G+++  ++++
Sbjct: 240 RLFEESPVRDVFTWTAMVYAYVQDGMLDEARRVFDEMPQKREMSYNVMIAGYAQYKRMDM 299

Query: 238 AREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRF 297
            RE+F  MP  N+ SWN MI+GY + GD+  A  LFD M  RD ++W ++IAGY  NG +
Sbjct: 300 GRELFEEMPFPNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLY 359

Query: 298 MEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLL 357
            EA+ +L  M       N +T   ALSA A +A L  G+ +H  +V+ G+    ++G  L
Sbjct: 360 EEAMNMLVEMKRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVGNAL 419

Query: 358 IQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA 417
           + MY KCG I+ A  VF+ +  K +  W  M+ G   HG   QAL +F  M   G+KP  
Sbjct: 420 VGMYCKCGCIDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDE 479

Query: 418 ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIE 477
           IT +GVL+ACSH GL + G  YF+ M  DYGI P  +HY C++D+L R G LEEA++ I 
Sbjct: 480 ITMVGVLSACSHTGLTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIR 539

Query: 478 SMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDK 537
           +MP  P+   W +LL  +R HGN ++GE AA  + K+ P   G YV+LSN+YAA+G+W  
Sbjct: 540 NMPFEPDAATWGALLGASRIHGNMELGEQAAEMVFKMEPHNSGMYVLLSNLYAASGRWVD 599

Query: 538 VSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGH 597
           VS++R  M++ G +K PG S +E +  +H F VGD  HP+   I++ L E+  K+K  G+
Sbjct: 600 VSKMRLKMRQIGVQKTPGYSWVEVQNKIHTFTVGDCFHPEKGRIYAFLEELDLKMKHEGY 659

Query: 598 VPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTK 657
           V  T  VL  +E++ EK+  L+ HSE+LA+AFG++ + S  PIR++KNLRVC DCH+  K
Sbjct: 660 VSSTKLVLHDVEEE-EKKHMLKYHSEKLAVAFGILTMPSGKPIRVMKNLRVCEDCHNAIK 718

Query: 658 LLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            +S I  R IIVRD+ R+HHF  G CSC+D+W
Sbjct: 719 HISKIVGRLIIVRDSHRYHHFSEGICSCRDYW 750



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 104/360 (28%), Positives = 187/360 (51%), Gaps = 27/360 (7%)

Query: 161 SSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLF 220
           +  +S + + G  DL   VFDAM  ++ VS+N +I GY++  +  +A  LFD+MP +DLF
Sbjct: 37  TKAISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDKMPHKDLF 96

Query: 221 SWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRD 280
           SW  ++ G+++  ++  AR +F  MP +++VSWNAM++GY+++G VD A ++FD M  ++
Sbjct: 97  SWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHKN 156

Query: 281 LITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLA---VLNKGRW 337
            I+WN ++A Y  +GR  EA  L E+        +D  L+S    + G     +L   R 
Sbjct: 157 SISWNGLLAAYVRSGRLEEARRLFES-------KSDWELISCNCLMGGYVKRNMLGDARQ 209

Query: 338 MHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGM 397
           +   I     V D +    +I  Y++ G +  A  +F     + V  WTAM+      GM
Sbjct: 210 LFDQIP----VRDLISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDGM 265

Query: 398 ATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYG 457
             +A  +F++M     +   +++  ++   +    ++ GR  F  M       P I  + 
Sbjct: 266 LDEARRVFDEM----PQKREMSYNVMIAGYAQYKRMDMGRELFEEMPF-----PNIGSWN 316

Query: 458 CLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPD 517
            ++   C+ G L +A++  + MP R + V W ++++G   +G   + E A N L+++  D
Sbjct: 317 IMISGYCQNGDLAQARNLFDMMPQRDS-VSWAAIIAGYAQNG---LYEEAMNMLVEMKRD 372



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 112/444 (25%), Positives = 199/444 (44%), Gaps = 61/444 (13%)

Query: 161 SSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLF 220
           ++++S Y +  +  L R +FD M  KDL SWN ++ GY +   +  A  LFD MP++D+ 
Sbjct: 68  NAMISGYLRNAKFSLARDLFDKMPHKDLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVV 127

Query: 221 SWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSA----------- 269
           SW  ++ G+ + G V+ AR++F RMP++N +SWN ++  Y+++G ++ A           
Sbjct: 128 SWNAMLSGYVRSGHVDEARDVFDRMPHKNSISWNGLLAAYVRSGRLEEARRLFESKSDWE 187

Query: 270 -----C---------------ELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLI 309
                C               +LFD + +RDLI+WN+MI+GY  +G   +A  L E   +
Sbjct: 188 LISCNCLMGGYVKRNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPV 247

Query: 310 GDVLPNDATLVSALS------------------------AVAGLAVLNKGRWMHSYIVKN 345
            DV    A + + +                          +AG A   +         + 
Sbjct: 248 RDVFTWTAMVYAYVQDGMLDEARRVFDEMPQKREMSYNVMIAGYAQYKRMDMGRELFEEM 307

Query: 346 GFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLF 405
            F   G    ++I  Y + G +  A  +F  + ++    W A+I G   +G+  +A+++ 
Sbjct: 308 PFPNIGSW-NIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNML 366

Query: 406 NKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCR 465
            +M R G      TF   L+AC+    +  G++    ++   G E        LV + C+
Sbjct: 367 VEMKRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRT-GYEKGCLVGNALVGMYCK 425

Query: 466 TGYLEEAKSTIESMPMRPNFVIWMSLLSGARNH--GNKDIGEYAANNLIKVAPDTIGCYV 523
            G ++EA    + +  + + V W ++L+G   H  G + +  + +     V PD I    
Sbjct: 426 CGCIDEAYDVFQGVQHK-DIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVG 484

Query: 524 VLSNIYAAAGQWDKVSEVREMMKK 547
           VLS   +  G  D+ +E    M K
Sbjct: 485 VLSAC-SHTGLTDRGTEYFHSMNK 507


>gi|147819809|emb|CAN60740.1| hypothetical protein VITISV_030210 [Vitis vinifera]
          Length = 1033

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 258/623 (41%), Positives = 387/623 (62%), Gaps = 43/623 (6%)

Query: 36  ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINN-LHYARSIFDRILQHPSLVLYNLLI 94
           E +Q+HA  +KTNL+ H    SRL++      ++  L YA S+F RI QHP+  ++  LI
Sbjct: 21  ELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVFSRI-QHPNSFIFFALI 79

Query: 95  KCYVFNQRSHEALTLFCDLLD--RFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLG 152
           K +       E+L L+  +L    +     F++P V+K   +L A  EG+Q+HG V K  
Sbjct: 80  KGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLLAFDEGRQVHGQVLKTH 139

Query: 153 FGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFD 212
             FD FV +S+V MY  FGE                               +E+A ++FD
Sbjct: 140 LWFDPFVGNSMVRMYIDFGE-------------------------------IELARRVFD 168

Query: 213 EMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACEL 272
            MP+RD+ SW  ++ G+ K G++E+A E+F  MP R+LVS NAMI+GY K G  + A ++
Sbjct: 169 RMPNRDVVSWNSMIAGYLKAGEIELASELFDEMPERDLVSCNAMIDGYGKCGRCELAEKV 228

Query: 273 FDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVL 332
           F+ M  +D++TW SMI+ Y  N   M+AL+L   ML   + P+   +VS LSA+A L  +
Sbjct: 229 FETMSDKDVVTWTSMISAYVQNRCPMKALDLFREMLSLGLRPDGPAIVSVLSAIADLGFV 288

Query: 333 NKGRWMHSYIVKNGF-VVDGVLGTLLIQMYSKCGSIESALTVFRAIS-KKKVGHWTAMIV 390
            +G+W+H+Y+  N   +  G +G+ LI MYSKCG IE+A  VFR+IS ++ +G W +MI 
Sbjct: 289 EEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMIS 348

Query: 391 GLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIE 450
           GL +HG+A +ALD+F +M RM ++P  ITF+G+L+ CSH GLV +G+ YF  M   Y I 
Sbjct: 349 GLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIV 408

Query: 451 PTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANN 510
           P I+HYGC++D+  R G LE+A   I++MP   + + W ++LS +  HG+ +IG+ AA  
Sbjct: 409 PRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAILSASMKHGHIEIGKSAALR 468

Query: 511 LIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVV 570
            I++APD    YV+LSNIYA AG+WD V+++R MM++RG +K  G SS+   G +HEF+ 
Sbjct: 469 AIELAPDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGCSSMLVBGKVHEFLX 528

Query: 571 G---DKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAI 627
           G   D S+  + ++ +K++E+ ++LK  G+ PD TQVLL IED+  KE+ L  HSE++A 
Sbjct: 529 GKELDSSY--SGQVLAKIAEVVSRLKLQGYEPDLTQVLLDIEDEG-KESLLNLHSEKMAX 585

Query: 628 AFGLINVKSRSPIRIVKNLRVCN 650
           AFGLI++   +PI IVKNLR+ +
Sbjct: 586 AFGLIHINKSAPIHIVKNLRIVD 608


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 248/649 (38%), Positives = 372/649 (57%), Gaps = 45/649 (6%)

Query: 85  PSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQI 144
           P++V +  LI     N    EAL++F  ++   + P++ T+   +     L  ++ G++I
Sbjct: 325 PNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREI 384

Query: 145 HGLVFKLG-FGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGE 203
           HG   K+     D  V +SLV  YAK   +++ RR F  +   DLVSWN ++ GY  +G 
Sbjct: 385 HGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGS 444

Query: 204 VEVAMKLFDEMP----DRDLFSWTCLVDGFSKCGKVEIAREIFYRM------PNRNLVSW 253
            E A++L  EM     + D+ +W  LV GF++ G  + A E F RM      PN   +S 
Sbjct: 445 HEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISG 504

Query: 254 ---------------------------------NAMINGYMKAGDVDSACELFDDMEIRD 280
                                            +A+I+ Y     ++ AC +F ++  RD
Sbjct: 505 ALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRD 564

Query: 281 LITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHS 340
           ++ WNS+I+    +GR + AL+LL  M + +V  N  T+VSAL A + LA L +G+ +H 
Sbjct: 565 VVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQ 624

Query: 341 YIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQ 400
           +I++ G      +   LI MY +CGSI+ +  +F  + ++ +  W  MI   GMHG    
Sbjct: 625 FIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMD 684

Query: 401 ALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLV 460
           A++LF +   MG+KP  ITF  +L+ACSH+GL+ +G +YF MM  +Y ++P +E Y C+V
Sbjct: 685 AVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMV 744

Query: 461 DILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIG 520
           D+L R G   E    IE MP  PN  +W SLL   R H N D+ EYAA  L ++ P + G
Sbjct: 745 DLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSG 804

Query: 521 CYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDE 580
            YV+++NIY+AAG+W+  +++R +MK+RG  K PG S IE +  LH FVVGD SHP  ++
Sbjct: 805 NYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQ 864

Query: 581 IHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPI 640
           I +K+  +   +K  G+VPDT  VL  + D+ EKE  L  HSE++A+AFGLI+  + +P+
Sbjct: 865 ISAKMESLYFDIKEIGYVPDTNFVLQDV-DEDEKEFSLCGHSEKIALAFGLISTTAGTPL 923

Query: 641 RIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           RI+KNLRVC DCHS TK +S +  R+II+RDN RFHHF +G CSC D+W
Sbjct: 924 RIIKNLRVCGDCHSATKFISKVEKRDIIMRDNYRFHHFVDGVCSCGDYW 972



 Score =  175 bits (443), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 116/423 (27%), Positives = 201/423 (47%), Gaps = 45/423 (10%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYV 98
           Q+HA  V   +     + SRLL +Y       +  AR +FD++ +  ++  +  +++ Y 
Sbjct: 110 QVHAQLVVNGVDVCEFLGSRLLEVYC--QTGCVEDARRMFDKMSER-NVFSWTAIMEMYC 166

Query: 99  FNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKF 158
                 E + LF  +++  + PD+F  P V K  + L   + GK ++  +  +GF  +  
Sbjct: 167 GLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSC 226

Query: 159 VLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP--- 215
           V  S++ M+ K G +D+ RR F+ ++ KD+  WN ++ GY  KGE + A+K   +M    
Sbjct: 227 VKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSG 286

Query: 216 -DRDLFSWTCLVDGFSKCGKVEIAREIFYRMP-----NRNLVSWNAMINGYMKAGDVDSA 269
              D  +W  ++ G+++ G+ E A + F  M        N+VSW A              
Sbjct: 287 VKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTA-------------- 332

Query: 270 CELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGL 329
                            +IAG E NG   EAL +   M++  V PN  T+ SA+SA   L
Sbjct: 333 -----------------LIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNL 375

Query: 330 AVLNKGRWMHSYIVK-NGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAM 388
           ++L  GR +H Y +K      D ++G  L+  Y+KC S+E A   F  I +  +  W AM
Sbjct: 376 SLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAM 435

Query: 389 IVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYG 448
           + G  + G   +A++L ++M   G++P  IT+ G++   +  G       +F  M +  G
Sbjct: 436 LAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRM-HSMG 494

Query: 449 IEP 451
           ++P
Sbjct: 495 MDP 497



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 125/266 (46%), Gaps = 13/266 (4%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           K  +++H   ++ ++   +G+ S L+S+Y     ++L  A S+F   L    +V++N +I
Sbjct: 516 KLGKEIHGYVLRNHIELSTGVGSALISMY--SGCDSLEVACSVFSE-LSTRDVVVWNSII 572

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
                + RS  AL L  ++    +  +  T+   +   ++L A+++GK+IH  + + G  
Sbjct: 573 SACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLD 632

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
              F+L+SL+ MY + G I   RR+FD M  +DLVSWN +I  Y   G    A+ LF + 
Sbjct: 633 TCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQF 692

Query: 215 PDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLV-----SWNAMINGYMKAGD 265
               L     ++T L+   S  G +E   + F  M     +      +  M++   +AG 
Sbjct: 693 RTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQ 752

Query: 266 VDSACELFDDMEIR-DLITWNSMIAG 290
            +   E  + M    +   W S++  
Sbjct: 753 FNETLEFIEKMPFEPNAAVWGSLLGA 778



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 108/241 (44%), Gaps = 3/241 (1%)

Query: 260 YMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATL 319
           Y + G V+ A  +FD M  R++ +W +++  Y   G + E ++L   M+   V P+    
Sbjct: 134 YCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVF 193

Query: 320 VSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK 379
                A + L     G+ ++ Y++  GF  +  +   ++ M+ KCG ++ A   F  I  
Sbjct: 194 PKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEF 253

Query: 380 KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRY 439
           K V  W  M+ G    G   +AL   + M   G+KP  +T+  +++  + +G   +  +Y
Sbjct: 254 KDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKY 313

Query: 440 FNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPM---RPNFVIWMSLLSGAR 496
           F  M      +P +  +  L+    + GY  EA S    M +   +PN +   S +S   
Sbjct: 314 FLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACT 373

Query: 497 N 497
           N
Sbjct: 374 N 374



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 121/267 (45%), Gaps = 11/267 (4%)

Query: 279 RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWM 338
           R  IT  S       NG    A  LL +M + +         S L     L  L  G  +
Sbjct: 52  RQRITGFSGGGSVHRNGVLNNAAMLLSSMDLTNPDECIEIYASILQKCRKLYNLRLGFQV 111

Query: 339 HSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTA---MIVGLGMH 395
           H+ +V NG  V   LG+ L+++Y + G +E A  +F  +S++ V  WTA   M  GLG +
Sbjct: 112 HAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDY 171

Query: 396 GMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEH 455
               + + LF  M   G++P    F  V  ACS       G+  ++ M++  G E     
Sbjct: 172 ---EETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLS-IGFEGNSCV 227

Query: 456 YGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGN--KDIGEYAANNLIK 513
            G ++D+  + G ++ A+   E +  +  F +W  ++SG  + G   K +   +   L  
Sbjct: 228 KGSILDMFIKCGRMDIARRFFEEIEFKDVF-MWNIMVSGYTSKGEFKKALKCISDMKLSG 286

Query: 514 VAPDTIGCYVVLSNIYAAAGQWDKVSE 540
           V PD +    ++S  YA +GQ+++ S+
Sbjct: 287 VKPDQVTWNAIISG-YAQSGQFEEASK 312


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 254/663 (38%), Positives = 386/663 (58%), Gaps = 18/663 (2%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +QLH+  +K  +     I   LL LYV   +  +  A  IF +     ++VL+NL++  Y
Sbjct: 264 KQLHSYLLKAGMSPDYIIEGSLLDLYVKCGV--IVEALEIF-KSGDRTNVVLWNLMLVAY 320

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
                  ++  LFC ++   + P+ FT PC+++     G I  G+QIH L  K GF  D 
Sbjct: 321 GQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDM 380

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
           +V   L+ MY+K+G +D  RR+ + ++ KD+VSW  +I GYV+    + A++ F +M   
Sbjct: 381 YVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDM--- 437

Query: 218 DLFS-WT---CLVDGFSKCGKVEIARE-------IFYRMPNRNLVSWNAMINGYMKAGDV 266
            LF  W     L    S C  ++  R+       ++    + ++  WNA++N Y + G  
Sbjct: 438 QLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVSIWNALVNLYARCGRS 497

Query: 267 DSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326
             A  LF+ +E +D ITWN M++G+  +G + EALE+   M    V  N  T VS++SA 
Sbjct: 498 KEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSISAS 557

Query: 327 AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWT 386
           A LA + +G+ +H+ ++K G   +  +   LI +Y KCGSIE A   F  +S++    W 
Sbjct: 558 ANLADIKQGKQIHATVIKTGCTSETEVANALISLYGKCGSIEDAKMQFFEMSERNHVSWN 617

Query: 387 AMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIND 446
            +I     HG   +ALDLF++M + G+KP  +TFIGVL ACSH GLV +G  YF  M ++
Sbjct: 618 TIITSCSQHGWGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLGYFKSMSSE 677

Query: 447 YGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEY 506
           +GI P  +HY C+VDIL R G L+ A+  +E MP+  N ++W +LLS  R H N +IGE 
Sbjct: 678 HGIHPRPDHYACVVDILGRAGQLDRARKFVEEMPVSANAMVWRTLLSACRVHKNIEIGEL 737

Query: 507 AANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLH 566
           AA  L+++ P     YV+LSN YA  G+W     VR+MMK RG RK+PG S IE + V+H
Sbjct: 738 AAKYLLELEPHDSASYVLLSNAYAVTGKWACRDHVRKMMKDRGVRKEPGRSWIEVKNVVH 797

Query: 567 EFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLA 626
            F VGD+ HP   +I+  L+++ ++L   G++      L   +++++K+     HSE+LA
Sbjct: 798 AFFVGDRLHPLAHQIYKYLADLDDRLAKIGYI-QGNYFLFHEKEKEQKDPTAFVHSEKLA 856

Query: 627 IAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCK 686
           +AFGL+++    P+R++KNLRVCNDCH+  K  S +  REI++RD  RFHHF NG+CSC 
Sbjct: 857 VAFGLMSLPPSMPLRVIKNLRVCNDCHTWMKFTSEVMGREIVLRDVYRFHHFNNGNCSCG 916

Query: 687 DFW 689
           DFW
Sbjct: 917 DFW 919



 Score =  179 bits (454), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 115/400 (28%), Positives = 202/400 (50%), Gaps = 15/400 (3%)

Query: 144 IHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGE 203
           IH      G G D+   + L+ +YAK G +   RRVF+ +  +D VSW  ++ GY + G 
Sbjct: 64  IHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGL 123

Query: 204 VEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAR----EIFYRMPNRNLVSWNA 255
            E A+ L+ +M    +    +  + ++   +K    E  R    +++ +      V  NA
Sbjct: 124 GEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNA 183

Query: 256 MINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPN 315
           +I  Y++ G +  A  +F +M   D +T+N++I+ +   G    ALE+ E M +    P+
Sbjct: 184 LIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPD 243

Query: 316 DATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFR 375
             T+ S L+A A +  LNKG+ +HSY++K G   D ++   L+ +Y KCG I  AL +F+
Sbjct: 244 CVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFK 303

Query: 376 AISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVND 435
           +  +  V  W  M+V  G      ++ DLF +M   G++P   T+  +L  C++AG +N 
Sbjct: 304 SGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINL 363

Query: 436 GRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGA 495
           G +   + I   G E  +   G L+D+  + G+L++A+  +E +  + + V W S+++G 
Sbjct: 364 GEQIHLLSIKT-GFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAK-DVVSWTSMIAGY 421

Query: 496 RNHG--NKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAG 533
             H    + +  +    L  + PD IG   + S I A AG
Sbjct: 422 VQHEFCKEALETFKDMQLFGIWPDNIG---LASAISACAG 458



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 118/498 (23%), Positives = 227/498 (45%), Gaps = 30/498 (6%)

Query: 14  ALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHY 73
           AL++   S  HW ++           +HA ++   L       + L+ LY    +  +  
Sbjct: 47  ALRECRGSVKHWPLVPV---------IHAKAITCGLGEDRIAGNLLIDLYAKKGL--VQR 95

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           AR +F+++    + V +  ++  Y  N    EA+ L+  +    ++P  + L  V+    
Sbjct: 96  ARRVFEQLSARDN-VSWVAMLSGYARNGLGEEAVGLYHQMHCSGVVPTPYVLSSVLSACT 154

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
           +    ++G+ +H  V+K G   +  V ++L+++Y +FG + L  RVF  M   D V++N 
Sbjct: 155 KAALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNT 214

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDRDLFSWT-------CLVDGFSKCGKVEIAREIFYRMP 246
           LI  + + G  E A+++F+EM    L  WT        L+   +  G +   +++   + 
Sbjct: 215 LISRHAQCGNGESALEIFEEM---RLSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLL 271

Query: 247 NRNL----VSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALE 302
              +    +   ++++ Y+K G +  A E+F   +  +++ WN M+  Y       ++ +
Sbjct: 272 KAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFD 331

Query: 303 LLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYS 362
           L   M+   V PN+ T    L        +N G  +H   +K GF  D  +  +LI MYS
Sbjct: 332 LFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMYVSGVLIDMYS 391

Query: 363 KCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIG 422
           K G ++ A  +   +  K V  WT+MI G   H    +AL+ F  M   G+ P  I    
Sbjct: 392 KYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLAS 451

Query: 423 VLNACSHAGLVNDGRR-YFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPM 481
            ++AC+    +  G++ +  + ++ Y  + +I  +  LV++  R G  +EA S  E++  
Sbjct: 452 AISACAGIKAMRQGQQIHSRVYVSGYSADVSI--WNALVNLYARCGRSKEAFSLFEAIEH 509

Query: 482 RPNFVIWMSLLSGARNHG 499
           +   + W  ++SG    G
Sbjct: 510 KDK-ITWNGMVSGFAQSG 526



 Score = 42.4 bits (98), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 46/221 (20%), Positives = 95/221 (42%), Gaps = 8/221 (3%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           K+ +Q+HA  +KT     + +++ L+SLY      ++  A+  F  + +  + V +N +I
Sbjct: 564 KQGKQIHATVIKTGCTSETEVANALISLY--GKCGSIEDAKMQFFEMSER-NHVSWNTII 620

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEG-KQIHGLVFKLGF 153
                +    EAL LF  +    L P++ T   V+   + +G ++EG      +  + G 
Sbjct: 621 TSCSQHGWGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLGYFKSMSSEHGI 680

Query: 154 GFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD-DKDLVSWNCLIDGYVKKGEVEV---AMK 209
                  + +V +  + G++D  R+  + M    + + W  L+        +E+   A K
Sbjct: 681 HPRPDHYACVVDILGRAGQLDRARKFVEEMPVSANAMVWRTLLSACRVHKNIEIGELAAK 740

Query: 210 LFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNL 250
              E+   D  S+  L + ++  GK      +   M +R +
Sbjct: 741 YLLELEPHDSASYVLLSNAYAVTGKWACRDHVRKMMKDRGV 781


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 262/665 (39%), Positives = 386/665 (58%), Gaps = 35/665 (5%)

Query: 55  ISSRLLSLYVDPHINNLHYA--------RSIFDRILQHPSLVLYNLLIKCYVFNQRSHEA 106
           IS +LL++    H N+             ++F++      +  +N LI        S E+
Sbjct: 7   ISLQLLTISFKIHKNHFSTTAAATNTNLTTLFNKYFDRTDVYSWNSLIAELARGGDSCES 66

Query: 107 LTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSM 166
           L  F  +    + P+  T PC IK  + L  +  GKQ H      GF  D FV S+L+ M
Sbjct: 67  LRAFSWMRKLDIKPNRSTFPCAIKSCSALFDLNSGKQAHQQALVFGFESDLFVSSALIDM 126

Query: 167 YAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWT--- 223
           Y+K G++   R +FD +  +++V+W  LI GYV+  +   A+ +F E     LF  +   
Sbjct: 127 YSKCGKLSNARVLFDEIPRRNIVTWTSLITGYVQNDDAHEALMVFKEF----LFEKSEGN 182

Query: 224 -----------CLVDGFSKCGKV------EIAREIFYRMP-NRNLVSWNAMINGYMKAGD 265
                       ++   S C +V      E    +  ++  ++ +   N +++ Y K G+
Sbjct: 183 GEEVGTSVDSVAMISVLSACSRVSNKAVSEGVHGVAIKVGLDKVMGVENTLLDAYAKCGE 242

Query: 266 VDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETML-IGDVLPNDATLVSALS 324
           V  + ++FDDM  +D+++WNSMIA Y  NG   +A E+   ML  G    N+ TL + L 
Sbjct: 243 VSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLL 302

Query: 325 AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGH 384
           A A    L  G  +H  ++K G+V + ++ T +I MY KCG  E A   F  + +K V  
Sbjct: 303 ACAHEGALRVGMCLHDQVIKMGYVNNVIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRS 362

Query: 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMI 444
           WTAMI G GMHG A +ALD+F +M   G+KP  ITFI VL ACSHAG + +G R+FN M 
Sbjct: 363 WTAMIAGYGMHGFAREALDVFYQMIWAGVKPNYITFISVLAACSHAGFLEEGWRWFNAMS 422

Query: 445 NDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIG 504
           ++Y +EP +EHYGC+VD+L R GY++EA + I+SM +R +FV+W SLL+  R H + ++ 
Sbjct: 423 HEYNVEPGVEHYGCMVDLLGRAGYIKEAYNLIKSMKVRRDFVLWGSLLAACRIHKDVELA 482

Query: 505 EYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGV 564
           E +A  L K+ P   G YV+L+NIYA AG+W  V  +R ++K RG  K PG S +E +G 
Sbjct: 483 EISARELFKLDPSNCGYYVLLANIYADAGRWKDVERMRILVKDRGLVKPPGYSLVELKGR 542

Query: 565 LHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSER 624
           +H F+VGDK HPQ ++I+  L E+  KL+ AG+VP+   VL  + D++EKE  +  HSE+
Sbjct: 543 VHVFLVGDKEHPQHEKIYKYLEELSVKLQEAGYVPNMASVLHDV-DEEEKEMIVRVHSEK 601

Query: 625 LAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCS 684
           LA+AFG++N    S I ++KNLRVC DCH+V KL+S I +REIIVRD  RFHHFK+G CS
Sbjct: 602 LAVAFGVMNSIPGSTIHVIKNLRVCGDCHTVIKLISKIVSREIIVRDAKRFHHFKDGLCS 661

Query: 685 CKDFW 689
           C D+W
Sbjct: 662 CGDYW 666



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 124/265 (46%), Gaps = 14/265 (5%)

Query: 37  TQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKC 96
           ++ +H +++K  L    G+ + LL  Y       +  +R +FD + +   +V +N +I  
Sbjct: 211 SEGVHGVAIKVGLDKVMGVENTLLDAY--AKCGEVSLSRKVFDDMAE-KDVVSWNSMIAV 267

Query: 97  YVFNQRSHEALTLFCDLLDRFLLPDN-FTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF 155
           Y  N  S +A  +F  +L       N  TL  ++   A  GA++ G  +H  V K+G+  
Sbjct: 268 YAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVN 327

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM- 214
           +  + +S++ MY K G+ ++ R  FD M +K++ SW  +I GY   G    A+ +F +M 
Sbjct: 328 NVIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMI 387

Query: 215 ---PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS-----WNAMINGYMKAGDV 266
                 +  ++  ++   S  G +E     F  M +   V      +  M++   +AG +
Sbjct: 388 WAGVKPNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYI 447

Query: 267 DSACELFDDMEI-RDLITWNSMIAG 290
             A  L   M++ RD + W S++A 
Sbjct: 448 KEAYNLIKSMKVRRDFVLWGSLLAA 472


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 252/668 (37%), Positives = 395/668 (59%), Gaps = 14/668 (2%)

Query: 31   SSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLY 90
            SS + + + +H   +++ +  +  +++ L+++Y      ++  A+++F+   +   ++ +
Sbjct: 499  SSAYSDGKMIHEDILRSGIKSNGHLANALMNMY--RRCGSIMEAQNVFEGT-RARDIISW 555

Query: 91   NLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFK 150
            N +I  +  +     A  LF ++    L PD  T   V+ G     A++ G+QIH L+ +
Sbjct: 556  NSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIE 615

Query: 151  LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
             G   D  + ++L++MY + G +     VF ++  ++++SW  +I G+  +GE   A +L
Sbjct: 616  SGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFEL 675

Query: 211  FDEM------PDRDLFSW---TCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYM 261
            F +M      P +  FS     C+       GK  IA  I       +    NA+I+ Y 
Sbjct: 676  FWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIA-HILNSGYELDTGVGNALISAYS 734

Query: 262  KAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVS 321
            K+G +  A ++FD M  RD+++WN MIAGY  NG    AL+    M    V+ N  + VS
Sbjct: 735  KSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVS 794

Query: 322  ALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKK 381
             L+A +  + L +G+ +H+ IVK     D  +G  LI MY+KCGS+E A  VF   ++K 
Sbjct: 795  ILNACSSFSALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEKN 854

Query: 382  VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFN 441
            V  W AMI     HG+A++ALD FN M + G+KP   TF  +L+AC+H+GLV +G R F+
Sbjct: 855  VVTWNAMINAYAQHGLASKALDFFNCMDKEGIKPDGSTFTSILSACNHSGLVMEGNRIFS 914

Query: 442  MMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNK 501
             + + +G+ PTIEHYGCLV +L R G  +EA++ I  MP  P+  +W +LL   R HGN 
Sbjct: 915  SLESQHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQMPFPPDAAVWETLLGACRIHGNV 974

Query: 502  DIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEH 561
             + E+AANN +K+       YV+LSN+YAAAG+WD V+++R +M+ RG RK+PG S IE 
Sbjct: 975  ALAEHAANNALKLNARNPAVYVLLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEV 1034

Query: 562  RGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENH 621
              ++HEF+  D+SHP+T EI+ +L  +  +++ AG+ PDT  VL  + D++ +E  L  H
Sbjct: 1035 DNIIHEFIAADRSHPETAEIYEELKRLSLEMERAGYSPDTQYVLHNL-DKEHQETSLCTH 1093

Query: 622  SERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNG 681
            SERLAIA+GL+     +PIRI KNLR+C DCH+ +K +S +  REII RD++RFH FKNG
Sbjct: 1094 SERLAIAYGLLKTPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIARDSNRFHTFKNG 1153

Query: 682  SCSCKDFW 689
             CSC+DFW
Sbjct: 1154 KCSCEDFW 1161



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 133/493 (26%), Positives = 237/493 (48%), Gaps = 17/493 (3%)

Query: 19  LPSRLHW-NILKFSSTHKETQ---QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYA 74
           +PS++ + +IL    +  E +   ++H+  ++        + + LL++Y      +L  A
Sbjct: 180 IPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMY--GKCEDLPSA 237

Query: 75  RSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAAR 134
           R +F  I +   +V YN ++  Y       E + LF  +    + PD  T   ++     
Sbjct: 238 RQVFSGIYRR-DVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTT 296

Query: 135 LGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCL 194
              + EGK+IH L    G   D  V ++L +M+ + G++   ++  +A  D+D+V +N L
Sbjct: 297 PSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNAL 356

Query: 195 IDGYVKKGEVEVAMKLFDEM-PDRDLFSWTCLVDGFSKC------GKVEIAREIFYRMPN 247
           I    + G  E A + + +M  D  + + T  +   + C      G  E+       + +
Sbjct: 357 IAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGH 416

Query: 248 RNLVS-WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLET 306
            + V   N++I+ Y + GD+  A ELF+ M  RDLI+WN++IAGY       EA++L + 
Sbjct: 417 SSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQ 476

Query: 307 MLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGS 366
           M    V P   T +  LSA    +  + G+ +H  I+++G   +G L   L+ MY +CGS
Sbjct: 477 MQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGS 536

Query: 367 IESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNA 426
           I  A  VF     + +  W +MI G   HG    A  LF +M + G++P  ITF  VL  
Sbjct: 537 IMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVG 596

Query: 427 CSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFV 486
           C +   +  GR+  +M+I + G++  +     L+++  R G L++A     S+  R N +
Sbjct: 597 CKNPEALELGRQ-IHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHR-NVM 654

Query: 487 IWMSLLSGARNHG 499
            W +++ G  + G
Sbjct: 655 SWTAMIGGFADQG 667



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 123/473 (26%), Positives = 234/473 (49%), Gaps = 13/473 (2%)

Query: 36  ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIK 95
           E +++HA  V+  +     +S+ L+++YV     ++  A  +F ++ +   ++ +N LI 
Sbjct: 100 EAKRIHAQMVEAGVGPDIFLSNLLINMYVK--CRSVSDAHQVFLKMPRR-DVISWNSLIS 156

Query: 96  CYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF 155
           CY       +A  LF ++     +P   T   ++        ++ GK+IH  + + G+  
Sbjct: 157 CYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQR 216

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP 215
           D  V +SL++MY K  ++   R+VF  +  +D+VS+N ++  Y +K  VE  + LF +M 
Sbjct: 217 DPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMS 276

Query: 216 DR----DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS----WNAMINGYMKAGDVD 267
                 D  ++  L+D F+    ++  + I     N  L S      A+   +++ GDV 
Sbjct: 277 SEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVA 336

Query: 268 SACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVA 327
            A +  +    RD++ +N++IA    +G + EA E    M    V+ N  T +S L+A +
Sbjct: 337 GAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACS 396

Query: 328 GLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTA 387
               L  G  +HS+I + G   D  +G  LI MY++CG +  A  +F  + K+ +  W A
Sbjct: 397 TSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNA 456

Query: 388 MIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDY 447
           +I G        +A+ L+ +M   G+KP  +TF+ +L+AC+++   +DG+     ++   
Sbjct: 457 IIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRS- 515

Query: 448 GIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGN 500
           GI+        L+++  R G + EA++  E    R + + W S+++G   HG+
Sbjct: 516 GIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRAR-DIISWNSMIAGHAQHGS 567



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 95/375 (25%), Positives = 184/375 (49%), Gaps = 10/375 (2%)

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD 187
           +++   R  ++ E K+IH  + + G G D F+ + L++MY K   +    +VF  M  +D
Sbjct: 88  LVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKMPRRD 147

Query: 188 LVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFY 243
           ++SWN LI  Y ++G  + A +LF+EM          ++  ++       ++E  ++I  
Sbjct: 148 VISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHS 207

Query: 244 RM----PNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFME 299
           ++      R+    N+++N Y K  D+ SA ++F  +  RD++++N+M+  Y       E
Sbjct: 208 KIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEE 267

Query: 300 ALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQ 359
            + L   M    + P+  T ++ L A    ++L++G+ +H   V  G   D  +GT L  
Sbjct: 268 CIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALAT 327

Query: 360 MYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAIT 419
           M+ +CG +  A     A + + V  + A+I  L  HG   +A + + +M   G+     T
Sbjct: 328 MFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTT 387

Query: 420 FIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM 479
           ++ VLNACS +  +  G    +  I++ G    ++    L+ +  R G L  A+    +M
Sbjct: 388 YLSVLNACSTSKALGAG-ELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTM 446

Query: 480 PMRPNFVIWMSLLSG 494
           P R + + W ++++G
Sbjct: 447 PKR-DLISWNAIIAG 460



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 102/225 (45%), Gaps = 7/225 (3%)

Query: 332 LNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVG 391
           L + + +H+ +V+ G   D  L  LLI MY KC S+  A  VF  + ++ V  W ++I  
Sbjct: 98  LAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKMPRRDVISWNSLISC 157

Query: 392 LGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN-DYGIE 450
               G   +A  LF +M   G  P+ IT+I +L AC     +  G++  + +I   Y  +
Sbjct: 158 YAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRD 217

Query: 451 PTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLS--GARNHGNKDIGEYAA 508
           P +++   L+++  +   L  A+     +  R + V + ++L     + +  + IG +  
Sbjct: 218 PRVQN--SLLNMYGKCEDLPSARQVFSGI-YRRDVVSYNTMLGLYAQKAYVEECIGLFGQ 274

Query: 509 NNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKD 553
            +   + PD +  Y+ L + +      D+   + ++    G   D
Sbjct: 275 MSSEGIPPDKV-TYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSD 318


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  477 bits (1227), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 243/623 (39%), Positives = 374/623 (60%), Gaps = 10/623 (1%)

Query: 75   RSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAAR 134
            R +F++++    L+ +N +I          EA  ++  +    ++P+  T   ++     
Sbjct: 400  RQVFEKLVNR-DLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVN 458

Query: 135  LGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCL 194
              A+  G++IH  V K GF FD  V ++L+SMYA+ G I   R +F+ M  KD++SW  +
Sbjct: 459  PTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAM 518

Query: 195  IDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNRNL 250
            I G  K G    A+ +F +M    L     ++T +++  S    ++  R I  ++    L
Sbjct: 519  IGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGL 578

Query: 251  VS----WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLET 306
             +     N ++N Y   G V  A ++FD M  RD++ +N+MI GY  +    EAL+L + 
Sbjct: 579  ATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDR 638

Query: 307  MLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGS 366
            +    + P+  T ++ L+A A    L   + +HS ++K+G++ D  LG  L+  Y+KCGS
Sbjct: 639  LQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGS 698

Query: 367  IESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNA 426
               AL VF  + K+ V  W A+I G   HG     L LF +M   G+KP  +TF+ +L+A
Sbjct: 699  FSDALLVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSA 758

Query: 427  CSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFV 486
            CSHAGL+ +GRRYF  M  D+GI PTIEHYGC+VD+L R G L+E ++ I++MP + N  
Sbjct: 759  CSHAGLLEEGRRYFCSMSRDFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTR 818

Query: 487  IWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMK 546
            IW +LL   R HGN  + E AA + +K+ PD    YV LS++YAAAG WD  +++R++M+
Sbjct: 819  IWGALLGACRIHGNVPVAERAAESSLKLDPDNAAVYVALSHMYAAAGMWDSAAKLRKLME 878

Query: 547  KRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLL 606
            +RG  K+PG S IE    LH FV  D+SHP++++I+++L ++ + +K  G+VPDT  V+ 
Sbjct: 879  QRGVTKEPGRSWIEVGDKLHYFVAEDRSHPESEKIYAELDKLTHAMKMEGYVPDTRSVMH 938

Query: 607  CIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNRE 666
             + D+ EKE  + +HSERLAIA+GLI+    +PIRI KNLRVC DCH+ TK ++ I +RE
Sbjct: 939  DV-DEGEKENAVCHHSERLAIAYGLISTLPGTPIRIFKNLRVCPDCHTATKFITKIVDRE 997

Query: 667  IIVRDNSRFHHFKNGSCSCKDFW 689
            I+ RD +RFHHFK+G CSC D+W
Sbjct: 998  IVARDVNRFHHFKDGVCSCGDYW 1020



 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 151/520 (29%), Positives = 253/520 (48%), Gaps = 44/520 (8%)

Query: 59  LLSLYVDPHINNLHYARSIFDRILQHPSLVL--YNLLIKCYVFNQRSHEALTLFCDLLDR 116
           L+++Y+     ++  AR ++++ L H    +  +N ++  YV      EAL L  ++   
Sbjct: 182 LINMYI--QCGSIEEARQVWNK-LNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQH 238

Query: 117 FLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLG 176
            L     T   ++       A++ G++IH    K    FD  V + +++MYAK G I   
Sbjct: 239 GLALGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEA 298

Query: 177 RRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFS 230
           R VFD M+ K +VSW  +I GY   G  E+A ++F +M      P+R   ++  +++ FS
Sbjct: 299 REVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNR--ITYINVLNAFS 356

Query: 231 KCGKVEIAREIFYRMPN----RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNS 286
               ++  + +   + N     +L    A++  Y K G      ++F+ +  RDLI WN+
Sbjct: 357 GPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNT 416

Query: 287 MIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNG 346
           MI G    G + EA E+   M    ++PN  T V  L+A      L+ GR +HS +VK+G
Sbjct: 417 MIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDG 476

Query: 347 FVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFN 406
           F+ D  +   LI MY++CGSI+ A  +F  + +K +  WTAMI GL   G+  +AL +F 
Sbjct: 477 FMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQ 536

Query: 407 KMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRT 466
            M + G+KP  +T+  +LNACS    ++ GRR    +I + G+         LV++    
Sbjct: 537 DMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVI-EAGLATDAHVANTLVNMYSMC 595

Query: 467 GYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVA----------- 515
           G +++A+   + M  R + V +           N  IG YAA+NL K A           
Sbjct: 596 GSVKDARQVFDRMTQR-DIVAY-----------NAMIGGYAAHNLGKEALKLFDRLQEEG 643

Query: 516 --PDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKD 553
             PD +  Y+ + N  A +G  +   E+  ++ K G+  D
Sbjct: 644 LKPDKV-TYINMLNACANSGSLEWAKEIHSLVLKDGYLSD 682



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 108/369 (29%), Positives = 193/369 (52%), Gaps = 12/369 (3%)

Query: 141 GKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD--DKDLVSWNCLIDGY 198
           G+++H  + +     D++ +++L++MY + G I+  R+V++ ++  ++ + SWN ++ GY
Sbjct: 160 GREVHEHIIQHCTVLDQYTVNALINMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGY 219

Query: 199 VKKGEVEVAMKLFDEMPDRDL-FSWTCLVDGFSKC---GKVEIAREIFYRMPNRNLV--- 251
           V+ G +E A+KL  EM    L       +   S C     +E  REI        L+   
Sbjct: 220 VQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDV 279

Query: 252 -SWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIG 310
              N ++N Y K G +  A E+FD ME + +++W  +I GY   G    A E+ + M   
Sbjct: 280 NVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQE 339

Query: 311 DVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESA 370
            V+PN  T ++ L+A +G A L  G+ +HS+I+  G   D  +GT L++MY+KCGS +  
Sbjct: 340 GVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDC 399

Query: 371 LTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHA 430
             VF  +  + +  W  MI GL   G   +A +++++M R GM P  IT++ +LNAC + 
Sbjct: 400 RQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNP 459

Query: 431 GLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMS 490
             ++ GR   + ++ D G    I     L+ +  R G +++A+     M +R + + W +
Sbjct: 460 TALHWGREIHSRVVKD-GFMFDISVQNALISMYARCGSIKDARLLFNKM-VRKDIISWTA 517

Query: 491 LLSGARNHG 499
           ++ G    G
Sbjct: 518 MIGGLAKSG 526



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 89/325 (27%), Positives = 166/325 (51%), Gaps = 22/325 (6%)

Query: 20  PSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFD 79
           P+ LHW            +++H+  VK   ++   + + L+S+Y      ++  AR +F+
Sbjct: 459 PTALHWG-----------REIHSRVVKDGFMFDISVQNALISMYA--RCGSIKDARLLFN 505

Query: 80  RILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIK 139
           ++++   ++ +  +I     +    EAL +F D+    L P+  T   ++   +   A+ 
Sbjct: 506 KMVR-KDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALD 564

Query: 140 EGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYV 199
            G++IH  V + G   D  V ++LV+MY+  G +   R+VFD M  +D+V++N +I GY 
Sbjct: 565 WGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYA 624

Query: 200 KKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS--- 252
                + A+KLFD + +     D  ++  +++  +  G +E A+EI   +     +S   
Sbjct: 625 AHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTS 684

Query: 253 -WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGD 311
             NA+++ Y K G    A  +FD M  R++I+WN++I G   +GR  + L+L E M +  
Sbjct: 685 LGNALVSTYAKCGSFSDALLVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEG 744

Query: 312 VLPNDATLVSALSAVAGLAVLNKGR 336
           + P+  T VS LSA +   +L +GR
Sbjct: 745 IKPDIVTFVSLLSACSHAGLLEEGR 769



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 105/214 (49%), Gaps = 11/214 (5%)

Query: 332 LNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAI--SKKKVGHWTAMI 389
           L  GR +H +I+++  V+D      LI MY +CGSIE A  V+  +  +++ V  W AM+
Sbjct: 157 LVAGREVHEHIIQHCTVLDQYTVNALINMYIQCGSIEEARQVWNKLNHTERTVHSWNAMV 216

Query: 390 VGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR-YFNMMINDYG 448
           VG   +G   +AL L  +M + G+     T + +L++C     +  GR  +   M     
Sbjct: 217 VGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALECGREIHVEAMKARLL 276

Query: 449 IEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAA 508
            +  + +  C++++  + G + EA+   + M  + + V W  ++ G  + G+ +I     
Sbjct: 277 FDVNVAN--CILNMYAKCGSIHEAREVFDKMETK-SVVSWTIIIGGYADCGHSEIAFEIF 333

Query: 509 NNLIK--VAPDTIGCYVVLSNIYA--AAGQWDKV 538
             + +  V P+ I  Y+ + N ++  AA +W K 
Sbjct: 334 QKMQQEGVVPNRI-TYINVLNAFSGPAALKWGKT 366


>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Glycine max]
          Length = 635

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 239/514 (46%), Positives = 320/514 (62%), Gaps = 1/514 (0%)

Query: 176 GRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKV 235
            R  FD+M  KD+ SWN +I    + G +  A +LF  MP+++  SW+ +V G+  CG +
Sbjct: 123 ARGFFDSMPLKDVASWNTMISALAQVGLMGEARRLFSAMPEKNCVSWSAMVSGYVACGDL 182

Query: 236 EIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNG 295
           + A E FY  P R++++W AMI GYMK G V+ A  LF +M +R L+TWN+MIAGY  NG
Sbjct: 183 DAAVECFYAAPMRSVITWTAMITGYMKFGRVELAERLFQEMSMRTLVTWNAMIAGYVENG 242

Query: 296 RFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGT 355
           R  + L L  TML   V PN  +L S L   + L+ L  G+ +H  + K     D   GT
Sbjct: 243 RAEDGLRLFRTMLETGVKPNALSLTSVLLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGT 302

Query: 356 LLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKP 415
            L+ MYSKCG ++ A  +F  I +K V  W AMI G   HG   +AL LF++M + G+KP
Sbjct: 303 SLVSMYSKCGDLKDAWELFIQIPRKDVVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKP 362

Query: 416 TAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKST 475
             ITF+ VL AC+HAGLV+ G +YFN M  D+GIE   EHY C+VD+L R G L EA   
Sbjct: 363 DWITFVAVLLACNHAGLVDLGVQYFNTMRRDFGIETKPEHYACMVDLLGRAGKLSEAVDL 422

Query: 476 IESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQW 535
           I+SMP +P+  I+ +LL   R H N ++ E+AA NL+++ P     YV L+N+YAA  +W
Sbjct: 423 IKSMPFKPHPAIYGTLLGACRIHKNLNLAEFAAKNLLELDPTIATGYVQLANVYAAQNRW 482

Query: 536 DKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAA 595
           D V+ +R  MK     K PG S IE   V+H F   D+ HP+   IH KL ++  K+K A
Sbjct: 483 DHVASIRRSMKDNNVVKIPGYSWIEINSVVHGFRSSDRLHPELASIHEKLKDLEKKMKLA 542

Query: 596 GHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSV 655
           G+VPD   VL  + ++  KE  L  HSE+LAIAFGL+ V    PIR+ KNLRVC DCHS 
Sbjct: 543 GYVPDLEFVLHDVGEEL-KEQLLLWHSEKLAIAFGLLKVPLGVPIRVFKNLRVCGDCHSA 601

Query: 656 TKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           TK +S I  REIIVRD +RFHHFK+G CSC+D+W
Sbjct: 602 TKYISTIEGREIIVRDTTRFHHFKDGFCSCRDYW 635



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 154/320 (48%), Gaps = 17/320 (5%)

Query: 184 DDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFS-KCGKVEIAREIF 242
           ++ ++++ N LI  YV+ G+++ A+++F++M  +   +W  ++  F+ K G  E AR++F
Sbjct: 37  NNNNVIASNKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAFAKKPGHFEYARQLF 96

Query: 243 YRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALE 302
            ++P  N VS+N M+  +     V  A   FD M ++D+ +WN+MI+     G   EA  
Sbjct: 97  EKIPQPNTVSYNIMLACHWHHLGVHDARGFFDSMPLKDVASWNTMISALAQVGLMGEARR 156

Query: 303 LLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRW---MHSYIVKNGFVVDGVLGTLLIQ 359
           L   M   + +   A +VS   A   L    +  +   M S I            T +I 
Sbjct: 157 LFSAMPEKNCVSWSA-MVSGYVACGDLDAAVECFYAAPMRSVIT----------WTAMIT 205

Query: 360 MYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAIT 419
            Y K G +E A  +F+ +S + +  W AMI G   +G A   L LF  M   G+KP A++
Sbjct: 206 GYMKFGRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALS 265

Query: 420 FIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM 479
              VL  CS+   +  G++  + ++    +         LV +  + G L++A      +
Sbjct: 266 LTSVLLGCSNLSALQLGKQ-VHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQI 324

Query: 480 PMRPNFVIWMSLLSGARNHG 499
           P R + V W +++SG   HG
Sbjct: 325 P-RKDVVCWNAMISGYAQHG 343



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 81/274 (29%), Positives = 129/274 (47%), Gaps = 19/274 (6%)

Query: 79  DRILQHPS---LVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARL 135
           +R+ Q  S   LV +N +I  YV N R+ + L LF  +L+  + P+  +L  V+ G + L
Sbjct: 217 ERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTSVLLGCSNL 276

Query: 136 GAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLI 195
            A++ GKQ+H LV K     D    +SLVSMY+K G++     +F  +  KD+V WN +I
Sbjct: 277 SALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRKDVVCWNAMI 336

Query: 196 DGYVKKGEVEVAMKLFDEMPDRDLFS-WTCLVDGFSKC---GKVEIAREIFYRMPNRNLV 251
            GY + G  + A++LFDEM    L   W   V     C   G V++  + F  M     +
Sbjct: 337 SGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLGVQYFNTMRRDFGI 396

Query: 252 S-----WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNG-RFMEALELLE 305
                 +  M++   +AG +  A +L   M  +     +  I G  L   R  + L L E
Sbjct: 397 ETKPEHYACMVDLLGRAGKLSEAVDLIKSMPFKP----HPAIYGTLLGACRIHKNLNLAE 452

Query: 306 TMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMH 339
                ++L  D T+ +    +A +    + RW H
Sbjct: 453 -FAAKNLLELDPTIATGYVQLANVYA-AQNRWDH 484


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 259/694 (37%), Positives = 401/694 (57%), Gaps = 41/694 (5%)

Query: 33  THKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNL 92
           +  + +QLHA  ++T+L   S +S+ +LS+Y +  +N LH +  IF+ +   P+ + +  
Sbjct: 20  SKSQAKQLHAQILRTSLPSPSLLST-ILSIYSN--LNLLHDSLLIFNSLPSPPTTLAWKS 76

Query: 93  LIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLG 152
           +I+CY  +     +L+ F  +L     PD+   P V+K    +  ++ G+ +HG + +LG
Sbjct: 77  IIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLG 136

Query: 153 FGFDKFVLSSLVSMYAKFGEID---------------------------LG--RRVFDAM 183
            GFD +  ++L++MY+KF  ++                           LG  R+VF+ M
Sbjct: 137 MGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLGSLRKVFEMM 196

Query: 184 DDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAR 239
             +D+VSWN +I G  + G  E A+ +  EM + DL    F+ + ++  F++   +   +
Sbjct: 197 PKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGK 256

Query: 240 EIF-YRMPN---RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNG 295
           EI  Y + N    ++   +++I+ Y K   VD +C +F  +   D I+WNS+IAG   NG
Sbjct: 257 EIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNG 316

Query: 296 RFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGT 355
            F E L+  + MLI  + PN  +  S + A A L  L+ G+ +H YI+++ F  +  + +
Sbjct: 317 MFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIAS 376

Query: 356 LLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKP 415
            L+ MY+KCG+I +A  +F  +    +  WTAMI+G  +HG A  A+ LF +M   G+KP
Sbjct: 377 ALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKP 436

Query: 416 TAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKST 475
             + F+ VL ACSHAGLV++  +YFN M  DY I P +EHY  + D+L R G LEEA   
Sbjct: 437 NYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEF 496

Query: 476 IESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQW 535
           I  M + P   +W +LL+  R H N ++ E  +  L  V P  IG YV+LSNIY+AAG+W
Sbjct: 497 ISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRW 556

Query: 536 DKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAA 595
               ++R  M+ +G +K P  S IE +  +H FV GDKSHP  D I+  L  +  +++  
Sbjct: 557 KDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVLLEQMERE 616

Query: 596 GHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSV 655
           G+V DTT+VL  +E++ +K   L +HSERLAI FG+I+  + + IR+ KNLRVC DCH+ 
Sbjct: 617 GYVLDTTEVLHDVEEE-QKRYLLCSHSERLAITFGIISTPAGTTIRVTKNLRVCVDCHTA 675

Query: 656 TKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           TK +S I  REI+VRDNSRFHHFK+G CSC DFW
Sbjct: 676 TKFISKIVGREIVVRDNSRFHHFKDGKCSCGDFW 709


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 257/678 (37%), Positives = 392/678 (57%), Gaps = 24/678 (3%)

Query: 19  LPSR--LHWNILKFSSTHK----ETQQLHALSVKTNLI-YHSGISSRLLSLYVDPHINNL 71
           +P R    WN++           E  +L  L  K +++ +++ +S    + +VD      
Sbjct: 103 MPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDE----- 157

Query: 72  HYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKG 131
             AR +F++ + H + + +N L+  YV N R  EA  LF    +  L+  N    C++ G
Sbjct: 158 --AREVFNK-MPHRNSISWNGLLAAYVHNGRLKEARRLFESQSNWELISWN----CLMGG 210

Query: 132 AARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSW 191
             +   + + +Q+    F      D    ++++S YA+ G++   +R+F+    +D+ +W
Sbjct: 211 YVKRNMLGDARQL----FDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTW 266

Query: 192 NCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLV 251
             ++ GYV+ G V+ A K FDEMP ++  S+  ++ G+ +  K+ IA E+F  MP RN+ 
Sbjct: 267 TAMVSGYVQNGMVDEARKYFDEMPVKNEISYNAMLAGYVQYKKMVIAGELFEAMPCRNIS 326

Query: 252 SWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGD 311
           SWN MI GY + G +  A +LFD M  RD ++W ++I+GY  NG + EAL +   M    
Sbjct: 327 SWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDG 386

Query: 312 VLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESAL 371
              N +T   ALS  A +A L  G+ +H  +VK GF     +G  L+ MY KCGS + A 
Sbjct: 387 ESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEAN 446

Query: 372 TVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAG 431
            VF  I +K V  W  MI G   HG   QAL LF  M + G+KP  IT +GVL+ACSH+G
Sbjct: 447 DVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSG 506

Query: 432 LVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSL 491
           L++ G  YF  M  DY ++PT +HY C++D+L R G LEEA++ + +MP  P    W +L
Sbjct: 507 LIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGAL 566

Query: 492 LSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFR 551
           L  +R HGN ++GE AA  + K+ P   G YV+LSN+YAA+G+W  V ++R  M++ G +
Sbjct: 567 LGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDVGKMRSKMREAGVQ 626

Query: 552 KDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQ 611
           K  G S +E +  +H F VGD  HP+ D I++ L E+  K++  G+V  T  VL  +E++
Sbjct: 627 KVTGYSWVEVQNKIHTFSVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEE 686

Query: 612 KEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRD 671
            EKE  L+ HSE+LA+AFG++ + +  PIR++KNLRVC DCH+  K +S I  R II+RD
Sbjct: 687 -EKEHMLKYHSEKLAVAFGILTIPAGRPIRVMKNLRVCQDCHNAIKHISKIVGRLIILRD 745

Query: 672 NSRFHHFKNGSCSCKDFW 689
           + RFHHF  G CSC D+W
Sbjct: 746 SHRFHHFSEGICSCGDYW 763



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 129/476 (27%), Positives = 224/476 (47%), Gaps = 41/476 (8%)

Query: 64  VDPHINNLH--YARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPD 121
           +  H+ N H   A  +F+ + +  S V YN +I  Y+ N +     +L  DL D+    D
Sbjct: 53  ISSHMRNGHCDSALRVFNSMPRRSS-VSYNAMISGYLRNAK----FSLARDLFDKMPERD 107

Query: 122 NFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFD 181
            F+   ++ G  R   + E  ++  L+ K     D    ++++S YA+ G +D  R VF+
Sbjct: 108 LFSWNVMLTGYVRNRRLGEAHKLFDLMPKK----DVVSWNAMLSGYAQNGFVDEAREVFN 163

Query: 182 AMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREI 241
            M  ++ +SWN L+  YV  G ++ A +LF+   + +L SW CL+ G+ K   +  AR++
Sbjct: 164 KMPHRNSISWNGLLAAYVHNGRLKEARRLFESQSNWELISWNCLMGGYVKRNMLGDARQL 223

Query: 242 FYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEAL 301
           F RMP R+++SWN MI+GY + GD+  A  LF++  IRD+ TW +M++GY  NG   EA 
Sbjct: 224 FDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEAR 283

Query: 302 ELLETMLIGDVLPNDATLVSALS----AVAG-----LAVLNKGRWMHSYIVKNGFVVDGV 352
           +  + M + + +  +A L   +      +AG     +   N   W               
Sbjct: 284 KYFDEMPVKNEISYNAMLAGYVQYKKMVIAGELFEAMPCRNISSW--------------- 328

Query: 353 LGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG 412
               +I  Y + G I  A  +F  + ++    W A+I G   +G   +AL++F +M R G
Sbjct: 329 --NTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDG 386

Query: 413 MKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEA 472
                 TF   L+ C+    +  G++    ++   G E        L+ +  + G  +EA
Sbjct: 387 ESSNRSTFSCALSTCADIAALELGKQVHGQVVKA-GFETGCFVGNALLGMYFKCGSTDEA 445

Query: 473 KSTIESMPMRPNFVIWMSLLSGARNH--GNKDIGEYAANNLIKVAPDTIGCYVVLS 526
               E +  + + V W ++++G   H  G + +  + +     V PD I    VLS
Sbjct: 446 NDVFEGIEEK-DVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLS 500



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/375 (26%), Positives = 179/375 (47%), Gaps = 41/375 (10%)

Query: 185 DKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYR 244
           D D+V+WN  I  +++ G  + A+++F+ MP R   S+  ++ G+ +  K  +AR++F +
Sbjct: 43  DPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFDK 102

Query: 245 MPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELL 304
           MP R+L SWN M+ GY++   +  A +LFD M  +D+++WN+M++GY  NG   EA E+ 
Sbjct: 103 MPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVF 162

Query: 305 ETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHS-YIVKNGFVVDGVLGTLLIQMYSK 363
             M   + +  +  L          A ++ GR   +  + ++    + +    L+  Y K
Sbjct: 163 NKMPHRNSISWNGLLA---------AYVHNGRLKEARRLFESQSNWELISWNCLMGGYVK 213

Query: 364 CGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT--AITFI 421
              +  A  +F  +  + V  W  MI G    G  +QA  LFN+       P     T+ 
Sbjct: 214 RNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNE------SPIRDVFTWT 267

Query: 422 GVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTI----- 476
            +++     G+V++ R+YF+ M     ++  I +   L       GY++  K  I     
Sbjct: 268 AMVSGYVQNGMVDEARKYFDEM----PVKNEISYNAML------AGYVQYKKMVIAGELF 317

Query: 477 ESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAP--DTIGCYVVLSNIYAAAGQ 534
           E+MP R N   W ++++G   +G    G   A  L  + P  D +    ++S  YA  G 
Sbjct: 318 EAMPCR-NISSWNTMITGYGQNG----GIAQARKLFDMMPQRDCVSWAAIISG-YAQNGH 371

Query: 535 WDKVSEVREMMKKRG 549
           +++   +   MK+ G
Sbjct: 372 YEEALNMFVEMKRDG 386


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 262/659 (39%), Positives = 385/659 (58%), Gaps = 11/659 (1%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +++H  + K   I    + + L+ +Y      ++  AR +FD +     ++ +N +I   
Sbjct: 254 KEVHKHAGKAGFISDLRVGNALIHMYAK--CGSIDDARLVFDGMCDR-DVISWNAMIGGL 310

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
             N   HEA T+F  +     +PD+ T   ++      GA +  K++H    ++G   D 
Sbjct: 311 AQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDL 370

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
            V S+ V MY + G ID  + +FD +  +++ +WN +I G  ++     A+ LF +M   
Sbjct: 371 RVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRRE 430

Query: 218 DLF-SWTCLVDGFS-KCGK--VEIAREIFYRMPNRNLVSW---NAMINGYMKAGDVDSAC 270
             F   T  V+  S   G+  +E  +E+     +  LV     NA+++ Y K G+   A 
Sbjct: 431 GFFPDATTFVNILSANVGEEALEWVKEVHSYAIDAGLVDLRVGNALVHMYAKCGNTMYAK 490

Query: 271 ELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLA 330
           ++FDDM  R++ TW  MI+G   +G   EA  L   ML   ++P+  T VS LSA A   
Sbjct: 491 QVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACASTG 550

Query: 331 VLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIV 390
            L   + +HS+ V  G V D  +G  L+ MY+KCGS++ A  VF  + ++ V  WT MI 
Sbjct: 551 ALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDMLERDVYSWTVMIG 610

Query: 391 GLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIE 450
           GL  HG    ALDLF KM   G KP   +F+ VL+ACSHAGLV++GRR F  +  DYGIE
Sbjct: 611 GLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSHAGLVDEGRRQFLSLTQDYGIE 670

Query: 451 PTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANN 510
           PT+EHY C+VD+L R G LEEAK  I +MP+ P    W +LL     +GN ++ E+AA  
Sbjct: 671 PTMEHYTCMVDLLGRAGQLEEAKHFILNMPIEPGDAPWGALLGACVTYGNLEMAEFAAKE 730

Query: 511 LIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVV 570
            +K+ P +   YV+LSNIYAA G W++   VR MM++RG RK+PG S IE    +H FVV
Sbjct: 731 RLKLKPKSASTYVLLSNIYAATGNWEQKLLVRSMMQRRGIRKEPGRSWIEVDNQIHSFVV 790

Query: 571 GDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFG 630
           GD SHP++ EI++KL ++  +LKA G+VPD T+++L   DQ+ KE  L +HSE+LAI +G
Sbjct: 791 GDTSHPESKEIYAKLKDLIKRLKAEGYVPD-TRLVLRNTDQEYKEQALCSHSEKLAIVYG 849

Query: 631 LINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           L++   R+PIR+ KNLRVC+DCH+ TK +S +  REI+ RD  RFHHFK+G CSC D+W
Sbjct: 850 LMHTPYRNPIRVYKNLRVCSDCHTATKFISKVTGREIVARDAKRFHHFKDGVCSCGDYW 908



 Score =  192 bits (487), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 145/539 (26%), Positives = 245/539 (45%), Gaps = 35/539 (6%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           K  +++HA  +++       + + L+++YV     ++  A+ IFD++++  +++ + ++I
Sbjct: 47  KWGKKIHAHIIQSGFQSDVRVETALVNMYVK--CGSIDDAQLIFDKMVER-NVISWTVMI 103

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
                  R  EA   F  +     +P+++T   ++   A  GA++  K++H      G  
Sbjct: 104 GGLAHYGRGQEAFHRFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLA 163

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
            D  V ++LV MYAK G ID  R VFD M ++D+ SW  +I G  + G  + A  LF +M
Sbjct: 164 LDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQM 223

Query: 215 ------PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS----WNAMINGYMKAG 264
                 P+   +         +  G +E  +E+         +S     NA+I+ Y K G
Sbjct: 224 ERGGCLPNLTTYLSILNASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCG 283

Query: 265 DVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS 324
            +D A  +FD M  RD+I+WN+MI G   NG   EA  +   M     +P+  T +S L+
Sbjct: 284 SIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLN 343

Query: 325 AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGH 384
                      + +H + V+ G V D  +G+  + MY +CGSI+ A  +F  ++ + V  
Sbjct: 344 THVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTT 403

Query: 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMM- 443
           W AMI G+       +AL LF +M R G  P A TF+ +L+A       N G      + 
Sbjct: 404 WNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSA-------NVGEEALEWVK 456

Query: 444 -INDYGIEPTIEHY---GCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
            ++ Y I+  +        LV +  + G    AK   + M  R N   W  ++SG   HG
Sbjct: 457 EVHSYAIDAGLVDLRVGNALVHMYAKCGNTMYAKQVFDDMVER-NVTTWTVMISGLAQHG 515

Query: 500 NKDIGEYAANNLIK-----VAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKD 553
               G  A +  ++     + PD    YV + +  A+ G  + V EV       G   D
Sbjct: 516 ---CGHEAFSLFLQMLREGIVPDAT-TYVSILSACASTGALEWVKEVHSHAVNAGLVSD 570



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 116/412 (28%), Positives = 198/412 (48%), Gaps = 12/412 (2%)

Query: 93  LIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLG 152
           +I  Y     + +A+ ++  +      P+  T   ++K      ++K GK+IH  + + G
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 153 FGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFD 212
           F  D  V ++LV+MY K G ID  + +FD M +++++SW  +I G    G  + A   F 
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120

Query: 213 EMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLV----SWNAMINGYMKAG 264
           +M         +++  +++  +  G +E  +E+     N  L       NA+++ Y K+G
Sbjct: 121 QMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSG 180

Query: 265 DVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSAL- 323
            +D A  +FD M  RD+ +W  MI G   +GR  EA  L   M  G  LPN  T +S L 
Sbjct: 181 SIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILN 240

Query: 324 -SAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKV 382
            SA+     L   + +H +  K GF+ D  +G  LI MY+KCGSI+ A  VF  +  + V
Sbjct: 241 ASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDV 300

Query: 383 GHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNM 442
             W AMI GL  +G   +A  +F KM + G  P + T++ +LN     G     +     
Sbjct: 301 ISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKH 360

Query: 443 MINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG 494
            + + G+   +      V +  R G +++A+   + + +R N   W +++ G
Sbjct: 361 AV-EVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVR-NVTTWNAMIGG 410



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 79/275 (28%), Positives = 134/275 (48%), Gaps = 15/275 (5%)

Query: 287 MIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNG 346
           MI GY   G   +A+++   M      PN+ T +S L A      L  G+ +H++I+++G
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 347 FVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFN 406
           F  D  + T L+ MY KCGSI+ A  +F  + ++ V  WT MI GL  +G   +A   F 
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120

Query: 407 KMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRT 466
           +M R G  P + T++ +LNA + AG +   +   +  +N  G+   +     LV +  ++
Sbjct: 121 QMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNA-GLALDLRVGNALVHMYAKS 179

Query: 467 GYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGC----- 521
           G +++A+   + M  R  F  W  ++ G   HG    G+ A +  +++  +  GC     
Sbjct: 180 GSIDDARVVFDGMVERDIFS-WTVMIGGLAQHGR---GQEAFSLFLQM--ERGGCLPNLT 233

Query: 522 -YVVLSNIYA--AAGQWDKVSEVREMMKKRGFRKD 553
            Y+ + N  A  + G  + V EV +   K GF  D
Sbjct: 234 TYLSILNASAITSTGALEWVKEVHKHAGKAGFISD 268


>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
          Length = 562

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 239/492 (48%), Positives = 315/492 (64%), Gaps = 1/492 (0%)

Query: 198 YVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMI 257
           Y   G ++ ++ LF    +  +F WT ++ G +  G V  A+++F  MP ++LVS  AM+
Sbjct: 72  YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGDVVSAQQLFDTMPEKSLVSLTAML 131

Query: 258 NGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDA 317
             Y K G++D+A  LFD ME RD + WN MI GY  NG   EAL L   ML     PN+ 
Sbjct: 132 TCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEV 191

Query: 318 TLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAI 377
           T++S LSA   L  L  GRW+HSYI  NG   +  +GT L+ MYSKCGS+E A  VF  I
Sbjct: 192 TVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKI 251

Query: 378 SKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGR 437
             K V  W +MIVG  MHG + +AL LF  MCRMG+ PT ITFIG+L+AC H+G V +G 
Sbjct: 252 DDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGW 311

Query: 438 RYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARN 497
             FN M ++YGIEP IEHYGC+V++L R G++E+A   +++M + P+ V+W +LL   R 
Sbjct: 312 DIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRL 371

Query: 498 HGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSS 557
           HG   +GE     L+       G Y++LSNIYAA G WD V+ +R MMK  G +K+PG S
Sbjct: 372 HGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCS 431

Query: 558 SIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAE 617
           SIE    +HEF+ G  +HP+  EI+  L E+   LK+ G+ P T  VL  I  + EKE  
Sbjct: 432 SIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVLHDI-GETEKERS 490

Query: 618 LENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHH 677
           LE HSE+LAIAFGLIN +  + I+IVKNLRVC DCH VTKL+S I  R+I+VRD +RFHH
Sbjct: 491 LEVHSEKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRFHH 550

Query: 678 FKNGSCSCKDFW 689
           F NGSCSC D+W
Sbjct: 551 FVNGSCSCGDYW 562



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/270 (31%), Positives = 136/270 (50%), Gaps = 14/270 (5%)

Query: 71  LHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIK 130
           L  AR +FD + +    V +N++I  Y  N   +EAL LF  +L     P+  T+  V+ 
Sbjct: 140 LDAARVLFDGMEERDG-VCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLS 198

Query: 131 GAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVS 190
              +LGA++ G+ +H  +   G  F+  V ++LV MY+K G ++  R VFD +DDKD+V+
Sbjct: 199 ACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVA 258

Query: 191 WNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDG-FSKCGK---VEIAREIFYRMP 246
           WN +I GY   G  + A++LF  M    L        G  S CG    V    +IF +M 
Sbjct: 259 WNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMK 318

Query: 247 NR-----NLVSWNAMINGYMKAGDVDSACELFDDMEIR-DLITWNSMIAGYELNGRFMEA 300
           +       +  +  M+N   +AG V+ A EL  +M I  D + W +++    L+G+    
Sbjct: 319 DEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALG 378

Query: 301 LELLETMLIGDVLPNDAT--LVSALSAVAG 328
            +++E +L+   L N  T  L+S + A  G
Sbjct: 379 EKIVE-LLVDQNLANSGTYILLSNIYAAVG 407



 Score = 41.2 bits (95), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 76/183 (41%), Gaps = 16/183 (8%)

Query: 338 MHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGM 397
           +H+ + ++G     +L   L + Y+  G ++ ++ +F       V  WTA+I G  + G 
Sbjct: 49  IHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGD 108

Query: 398 ATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYG 457
              A  LF+ M     + + ++   +L   +  G ++  R  F+ M    G+      + 
Sbjct: 109 VVSAQQLFDTM----PEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGV-----CWN 159

Query: 458 CLVDILCRTGYLEEAKSTIESM---PMRPNFVIWMSLLSGARNHGNKDIGE----YAANN 510
            ++D   + G   EA      M     +PN V  +S+LS     G  + G     Y  NN
Sbjct: 160 VMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENN 219

Query: 511 LIK 513
            I+
Sbjct: 220 GIQ 222


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 248/661 (37%), Positives = 392/661 (59%), Gaps = 12/661 (1%)

Query: 37  TQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKC 96
            +Q+H   +K+ +  ++ + + LL +Y++     L  AR +FD +++  S   +N +I  
Sbjct: 47  AKQVHDCIIKSRMEQNAHVMNNLLHVYIE--CGRLQEARCVFDALVK-KSGASWNAMIAG 103

Query: 97  YVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFD 156
           YV ++ + +A+ LF ++    + P+  T   ++K  A L A+K GK++H  +   G   D
Sbjct: 104 YVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALKWGKEVHACIRHGGLESD 163

Query: 157 KFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD 216
             V ++L+ MY K G I+  RR+FD + + D++SW  +I  Y + G  + A +L  +M  
Sbjct: 164 VRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQ 223

Query: 217 R----DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLV----SWNAMINGYMKAGDVDS 268
                +  ++  +++  +  G ++  + +     +  L        A++  Y K+G +D 
Sbjct: 224 EGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDD 283

Query: 269 ACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAG 328
           A  +FD M++RD+++WN MI  +  +GR  EA +L   M      P+    +S L+A A 
Sbjct: 284 ARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACAS 343

Query: 329 LAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAM 388
              L   + +H + + +G  VD  +GT L+ MYSK GSI+ A  VF  +  + V  W AM
Sbjct: 344 AGALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAM 403

Query: 389 IVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYG 448
           I GL  HG+   AL++F +M   G+KP  +TF+ VL+ACSHAGLV++GR  +  M   YG
Sbjct: 404 ISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYG 463

Query: 449 IEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAA 508
           IEP + H  C+VD+L R G L EAK  I++M + P+   W +LL   R +GN ++GE  A
Sbjct: 464 IEPDVSHCNCMVDLLGRAGRLMEAKLFIDNMAVDPDEATWGALLGSCRTYGNVELGELVA 523

Query: 509 NNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEF 568
              +K+ P     YV+LSNIYA AG+WD VS VR MM++RG RK+PG S IE    +H+F
Sbjct: 524 KERLKLDPKNAATYVLLSNIYAEAGKWDMVSWVRTMMRERGIRKEPGRSWIEVDNKIHDF 583

Query: 569 VVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIA 628
           +V D SHP+  EI+    ++  K+KA G++PD T+++L  ++ K+KE ++ +HSE+LAI 
Sbjct: 584 LVADSSHPECKEINESKDKVIEKIKAEGYIPD-TRLVLKNKNMKDKELDICSHSEKLAIV 642

Query: 629 FGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDF 688
           +GL++    +PIR+ KNLRVC DCH  TKL+S +  REIIVRD +RFHHFK+G CSC D+
Sbjct: 643 YGLMHTPPGNPIRVFKNLRVCTDCHGATKLISKVEGREIIVRDANRFHHFKDGVCSCGDY 702

Query: 689 W 689
           W
Sbjct: 703 W 703



 Score =  188 bits (477), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 130/435 (29%), Positives = 214/435 (49%), Gaps = 18/435 (4%)

Query: 105 EALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLV 164
           EA+ +  + L R L+ D+F    V+K   +   +   KQ+H  + K     +  V+++L+
Sbjct: 11  EAIVVLMNRLQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLL 70

Query: 165 SMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR----DLF 220
            +Y + G +   R VFDA+  K   SWN +I GYV+    E AM+LF EM       +  
Sbjct: 71  HVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAG 130

Query: 221 SWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS----WNAMINGYMKAGDVDSACELFDDM 276
           ++  ++   +    ++  +E+   + +  L S      A++  Y K G ++ A  +FD++
Sbjct: 131 TYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNL 190

Query: 277 EIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGR 336
              D+I+W  MI  Y  +G   EA  L+  M      PN  T VS L+A A    L   +
Sbjct: 191 MNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVK 250

Query: 337 WMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHG 396
            +H + +  G  +D  +GT L+QMY+K GSI+ A  VF  +  + V  W  MI     HG
Sbjct: 251 RVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHG 310

Query: 397 MATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHY 456
              +A DLF +M   G KP AI F+ +LNAC+ AG +   ++     + D G+E  +   
Sbjct: 311 RGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHAL-DSGLEVDVRVG 369

Query: 457 GCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIK--- 513
             LV +  ++G +++A+   + M +R N V W +++SG   HG   +G+ A     +   
Sbjct: 370 TALVHMYSKSGSIDDARVVFDRMKVR-NVVSWNAMISGLAQHG---LGQDALEVFRRMTA 425

Query: 514 --VAPDTIGCYVVLS 526
             V PD +    VLS
Sbjct: 426 HGVKPDRVTFVAVLS 440



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 114/260 (43%), Gaps = 11/260 (4%)

Query: 299 EALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLI 358
           EA+ +L   L   ++ +    V  L        L   + +H  I+K+    +  +   L+
Sbjct: 11  EAIVVLMNRLQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLL 70

Query: 359 QMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI 418
            +Y +CG ++ A  VF A+ KK    W AMI G   H  A  A+ LF +MC  G++P A 
Sbjct: 71  HVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAG 130

Query: 419 TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIES 478
           T++ +L AC+    +  G+   +  I   G+E  +     L+ +  + G + EA+   ++
Sbjct: 131 TYMIILKACASLSALKWGKE-VHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDN 189

Query: 479 MPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKV-----APDTIGCYVVLSNIYAAAG 533
           + M  + + W  ++      GN   G+ A   ++++      P+ I  YV + N  A+ G
Sbjct: 190 L-MNHDIISWTVMIGAYAQSGN---GKEAYRLMLQMEQEGFKPNAI-TYVSILNACASEG 244

Query: 534 QWDKVSEVREMMKKRGFRKD 553
               V  V       G   D
Sbjct: 245 ALKWVKRVHRHALDAGLELD 264


>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 261/679 (38%), Positives = 401/679 (59%), Gaps = 50/679 (7%)

Query: 22  RLHWNILKFSSTHKETQQ-LHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDR 80
            + +N L  SST     + LHAL V    +    IS+RL++LY +  + ++  +R  FD+
Sbjct: 19  EIDFNFLFDSSTKTPFAKCLHALLVVAGKVQSIFISTRLVNLYAN--LGDVSLSRCTFDQ 76

Query: 81  ILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL-DRFLLPDNFTLPCVIKGAARLGAIK 139
           I Q   +  +N +I  YV N   HEA+  F  LL    + PD +T P V+K     G + 
Sbjct: 77  IPQK-DVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC---GTLV 132

Query: 140 EGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYV 199
           +G++IH   FKLGF ++ FV +SL+ MY++FG   + R                      
Sbjct: 133 DGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIAR---------------------- 170

Query: 200 KKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMP----NRNLVS--- 252
                     LFD+MP RD+ SW  ++ G  + G    A ++   M       N V+   
Sbjct: 171 ---------SLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVS 221

Query: 253 -WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETML-IG 310
                ++ Y K G +DSA ++F+ + ++D+I+WN++I GY  NG   EA+E+ + M    
Sbjct: 222 ILPVFVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECK 281

Query: 311 DVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESA 370
           +++PN  T VS L A A +  L +G  +H  ++K    +D  + T LI +Y KCG +  A
Sbjct: 282 EIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDA 341

Query: 371 LTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHA 430
           +++F  + ++    W A+I   G+HG A + L LF +M   G+KP  +TF+ +L+ACSH+
Sbjct: 342 MSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHS 401

Query: 431 GLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMS 490
           G V +G+  F +M  +YGI+P+++HYGC+VD+L R GYLE A   I+ MP++P+  IW +
Sbjct: 402 GFVEEGKWCFRLM-QEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGA 460

Query: 491 LLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGF 550
           LL   R HGN ++G++A++ L +V    +G YV+LSNIYA  G+W+ V +VR + ++RG 
Sbjct: 461 LLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGL 520

Query: 551 RKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIED 610
           +K PG S+IE    +  F  G++SHP+  EI+ +L  +  K+K+ G++PD + VL  +E+
Sbjct: 521 KKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEE 580

Query: 611 QKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVR 670
             EKE  L +HSERLAIAFG+I+   +SPIRI KNLRVC DCH+ TK +S I  REI+VR
Sbjct: 581 D-EKEHILTSHSERLAIAFGIISTPPKSPIRIFKNLRVCGDCHNATKFISRITQREIVVR 639

Query: 671 DNSRFHHFKNGSCSCKDFW 689
           D++RFHHFK+G CSC D+W
Sbjct: 640 DSNRFHHFKDGICSCGDYW 658


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 254/668 (38%), Positives = 392/668 (58%), Gaps = 19/668 (2%)

Query: 37  TQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKC 96
            + +H  ++K  L +   +S  L+++Y       +  AR +FD  ++   +VL+N+++K 
Sbjct: 202 AEGVHGYAIKIGLEWDVFVSGALVNIY--SKCGRMRDARLLFD-WMRERDVVLWNMMLKG 258

Query: 97  YVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGA--IKEGKQIHGLVFKLGFG 154
           YV      EA  LF +     L PD F++  ++ G    G   ++ GKQ+HG+  K G  
Sbjct: 259 YVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLD 318

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
            D  V +SLV+MY+K G     R VF+ M   DL+SWN +I    +    E ++ LF ++
Sbjct: 319 SDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDL 378

Query: 215 ------PDRDLFSWTCLVDGFSKCGKV-------EIAREIFYRMPNRNLVSWNAMINGYM 261
                 PD    +   L      CG +       +I         + +L   + +++ Y+
Sbjct: 379 LHEGLKPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYI 438

Query: 262 KAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVS 321
           K GD+ +A  +F+ +   D + W SMI+G   NG   +AL +   M    V+P++ T  +
Sbjct: 439 KCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFAT 498

Query: 322 ALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKK 381
            + A + +  L +GR +H+ ++K   V D  +GT L+ MY+KCG+IE A  +F+ ++ + 
Sbjct: 499 LIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRN 558

Query: 382 VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFN 441
           +  W AM+VGL  HG A +A++LF  M   G++P  ++FIG+L+ACSHAGL ++   Y +
Sbjct: 559 IALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLH 618

Query: 442 MMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNK 501
            M NDYGIEP IEHY CLVD L R G ++EA   IE+MP + +  I  +LL   R  G+ 
Sbjct: 619 SMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDV 678

Query: 502 DIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEH 561
           + G+  A  L  + P     YV+LSNIYAAA +WD V++ R+MMK++  +KDPG S I+ 
Sbjct: 679 ETGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDV 738

Query: 562 RGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENH 621
           + +LH FVV D+SHPQ D I+ K+ EM   ++  G+VPDT  VLL +ED+ EKE  L  H
Sbjct: 739 KNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEFVLLDVEDE-EKERSLYYH 797

Query: 622 SERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNG 681
           SE+LAIA+GLI+  + + IR++KNLRVC DCH+  K +S ++ REI++RD +RFHHF++G
Sbjct: 798 SEKLAIAYGLISTPASTTIRVIKNLRVCGDCHNAIKYISKVFEREIVLRDANRFHHFRDG 857

Query: 682 SCSCKDFW 689
            CSC D+W
Sbjct: 858 VCSCGDYW 865



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 148/501 (29%), Positives = 247/501 (49%), Gaps = 41/501 (8%)

Query: 55  ISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRS-----HEALTL 109
           +S+ LL++Y      +L  AR +FD   +   LV +N ++  Y  +  S      E L L
Sbjct: 114 LSNNLLTMY--SKCGSLSSARQVFDTTPER-DLVTWNAILGAYAASVDSNDGNAQEGLHL 170

Query: 110 FCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAK 169
           F  L          TL  V+K     G +   + +HG   K+G  +D FV  +LV++Y+K
Sbjct: 171 FRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSK 230

Query: 170 FGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDRDLFSWT 223
            G +   R +FD M ++D+V WN ++ GYV+ G  + A +LF E       PD   FS  
Sbjct: 231 CGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDE--FSVQ 288

Query: 224 CLVDG--FSKCGKVEIAREIFYRMPNRNLVS----WNAMINGYMKAGDVDSACELFDDME 277
            +++G  ++    +E+ +++        L S     N+++N Y K G    A E+F+DM+
Sbjct: 289 LILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMK 348

Query: 278 IRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVS-----ALSAVAGLAVL 332
             DLI+WNSMI+    +    E++ L   +L   + P+  TL S     A  A   L +L
Sbjct: 349 HLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLL 408

Query: 333 NKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGL 392
           ++G+ +H++ +K GF  D  + + ++ MY KCG + +A  VF  IS      WT+MI G 
Sbjct: 409 DQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGC 468

Query: 393 GMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR-YFNMMINDYGIEP 451
             +G   QAL ++++M +  + P   TF  ++ A S    +  GR+ + N++  D   +P
Sbjct: 469 VDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDP 528

Query: 452 TIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNL 511
            +     LVD+  + G +E+A    + M +R N  +W ++L G   HGN +     A NL
Sbjct: 529 FVG--TSLVDMYAKCGNIEDAYRLFKKMNVR-NIALWNAMLVGLAQHGNAE----EAVNL 581

Query: 512 IK------VAPDTIGCYVVLS 526
            K      + PD +    +LS
Sbjct: 582 FKSMKSHGIEPDRVSFIGILS 602



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 115/278 (41%), Gaps = 30/278 (10%)

Query: 218 DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDME 277
           D F    L+  +SKCG +  AR++F   P R+LV+WNA++  Y  A  VDS         
Sbjct: 111 DHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAY--AASVDSN-------- 160

Query: 278 IRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRW 337
                           +G   E L L   +          TL   L        L     
Sbjct: 161 ----------------DGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEG 204

Query: 338 MHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGM 397
           +H Y +K G   D  +   L+ +YSKCG +  A  +F  + ++ V  W  M+ G    G+
Sbjct: 205 VHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGL 264

Query: 398 ATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGL--VNDGRRYFNMMINDYGIEPTIEH 455
             +A  LF++  R G++P   +   +LN C  AG   +  G++   + +   G++  +  
Sbjct: 265 EKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKS-GLDSDVSV 323

Query: 456 YGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLS 493
              LV++  + G    A+     M    + + W S++S
Sbjct: 324 ANSLVNMYSKMGCAYFAREVFNDMK-HLDLISWNSMIS 360



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 81/168 (48%), Gaps = 13/168 (7%)

Query: 335 GRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGM 394
           G+  H+ IV +G   D  L   L+ MYSKCGS+ SA  VF    ++ +  W A++     
Sbjct: 96  GKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAA 155

Query: 395 H-----GMATQALDLFNKMCRMGMKPTA-ITFIGVLNACSHAGLV--NDGRRYFNMMIND 446
                 G A + L LF ++ R  +  T  +T   VL  C ++G +   +G   + + I  
Sbjct: 156 SVDSNDGNAQEGLHLF-RLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKI-- 212

Query: 447 YGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG 494
            G+E  +   G LV+I  + G + +A+   + M  R + V+W  +L G
Sbjct: 213 -GLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRER-DVVLWNMMLKG 258


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 243/616 (39%), Positives = 366/616 (59%), Gaps = 10/616 (1%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           A+ IFD +    S + +N ++  YV N R  +A  LF    D  L+  N    C++ G  
Sbjct: 161 AKEIFDEMPCKNS-ISWNGMLAAYVQNGRIEDARRLFESKADWELISWN----CMMGGYV 215

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
           +   + + + I    F      D+   ++++S YA+ GE+   +R+F+    +D+ +W  
Sbjct: 216 KRNRLVDARGI----FDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTA 271

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSW 253
           ++ GYV+ G ++ A ++FD MP+++  SW  ++ G+ +C +++ ARE+F  MP +N+ SW
Sbjct: 272 MVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSW 331

Query: 254 NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL 313
           N MI GY + GD+  A   FD M  RD I+W ++IAGY  +G   EAL L   M      
Sbjct: 332 NTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGER 391

Query: 314 PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTV 373
            N +T  S LS  A +A L  G+ +H  +VK G      +G  L+ MY KCG+I+ A  V
Sbjct: 392 LNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIV 451

Query: 374 FRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLV 433
           F  I +K+V  W  MI G   HG   +AL LF  M + G+ P  +T +GVL+ACSH GLV
Sbjct: 452 FEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLV 511

Query: 434 NDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLS 493
           + G  YF  M  DYGI    +HY C++D+L R G L++A++ +++MP  P+   W +LL 
Sbjct: 512 DKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLG 571

Query: 494 GARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKD 553
            +R HGN ++GE AA  + ++ PD  G YV+LSN+YAA+G+W  V  +R  M+ RG +K 
Sbjct: 572 ASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKV 631

Query: 554 PGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKE 613
           PG S +E +  +H F VGD  HP+ D I++ L E+  K+K  G+V  T  VL  +E++ E
Sbjct: 632 PGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEELDLKMKKEGYVSSTKLVLHDVEEE-E 690

Query: 614 KEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNS 673
           K   L+ HSE+LA+AFG++ + +  PIR++KNLRVC DCH+  K +S I  R II+RD+ 
Sbjct: 691 KVHMLKYHSEKLAVAFGILAIPAGRPIRVIKNLRVCEDCHNAMKHISKIVGRLIILRDSH 750

Query: 674 RFHHFKNGSCSCKDFW 689
           RFHHF  G CSC D+W
Sbjct: 751 RFHHFNGGQCSCGDYW 766



 Score =  165 bits (417), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 112/423 (26%), Positives = 196/423 (46%), Gaps = 36/423 (8%)

Query: 86  SLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIH 145
           S + +N +I   + N + + A  LF  +  R L+  N     +I G  R   ++  +   
Sbjct: 79  SSISWNAMISGCLSNDKFYLARQLFEKMPTRDLVSWNV----MISGCVRYRNLRAAR--- 131

Query: 146 GLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVE 205
            L+F      D    ++++S YA+ G +   + +FD M  K+ +SWN ++  YV+ G +E
Sbjct: 132 -LLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIE 190

Query: 206 VAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGD 265
            A +LF+   D +L SW C++ G+ K  ++  AR IF RMP R+ VSWN MI+GY + G+
Sbjct: 191 DARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGE 250

Query: 266 VDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLV----- 320
           +  A  LF++  +RD+ TW +M++GY  NG   EA  + + M   + +  +A +      
Sbjct: 251 LLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQC 310

Query: 321 ----SALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRA 376
                A      +   N   W                   +I  Y++ G I  A   F  
Sbjct: 311 KRMDQARELFEAMPCQNVSSW-----------------NTMITGYAQNGDIAQARNFFDR 353

Query: 377 ISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDG 436
           + ++    W A+I G    G   +AL LF +M R G +    TF   L+ C+    +  G
Sbjct: 354 MPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELG 413

Query: 437 RRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGAR 496
           ++    ++   G+E        L+ + C+ G +++A    E +  +   V W ++++G  
Sbjct: 414 KQVHGRVVK-AGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEK-EVVSWNTMIAGYA 471

Query: 497 NHG 499
            HG
Sbjct: 472 RHG 474



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 175/357 (49%), Gaps = 27/357 (7%)

Query: 164 VSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWT 223
           ++ + + G+ D   R+F++M  +  +SWN +I G +   +  +A +LF++MP RDL SW 
Sbjct: 56  ITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEKMPTRDLVSWN 115

Query: 224 CLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLIT 283
            ++ G  +   +  AR +F +MP R++VSWNAM++GY + G V  A E+FD+M  ++ I+
Sbjct: 116 VMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSIS 175

Query: 284 WNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNK---GRWMHS 340
           WN M+A Y  NGR  +A  L E+         D  L+S    + G    N+    R +  
Sbjct: 176 WNGMLAAYVQNGRIEDARRLFES-------KADWELISWNCMMGGYVKRNRLVDARGIFD 228

Query: 341 YIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQ 400
            + +     D V    +I  Y++ G +  A  +F     + V  WTAM+ G   +GM  +
Sbjct: 229 RMPER----DEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDE 284

Query: 401 ALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLV 460
           A  +F+ M     +  ++++  ++        ++  R  F  M         +  +  ++
Sbjct: 285 ARRVFDGMP----EKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQ-----NVSSWNTMI 335

Query: 461 DILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPD 517
               + G + +A++  + MP R + + W ++++G    G    GE A +  +++  D
Sbjct: 336 TGYAQNGDIAQARNFFDRMPQRDS-ISWAAIIAGYAQSG---YGEEALHLFVEMKRD 388


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 248/660 (37%), Positives = 387/660 (58%), Gaps = 12/660 (1%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +QLH+  +K  +     I   LL LYV     ++  A   F    +  ++VL+N+++  Y
Sbjct: 334 KQLHSYVIKMGMSSDLIIEGSLLDLYVKCF--DIETAHEYF-LTTETENVVLWNVMLVAY 390

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
                  E+  +F  +    L+P+ +T P +++    LGA+  G+QIH  V K GF F+ 
Sbjct: 391 GQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNV 450

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
           +V S L+ MYAK GE+D  R +   + ++D+VSW  +I GY +      A+KLF EM ++
Sbjct: 451 YVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQ 510

Query: 218 DLFSWTC-LVDGFSKCGKVE-------IAREIFYRMPNRNLVSWNAMINGYMKAGDVDSA 269
            + S         S C  ++       I  + +    + +L   NA+++ Y + G    A
Sbjct: 511 GIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDA 570

Query: 270 CELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGL 329
              F+ ++ +D I+WN++I+G+  +G   EAL++   M    V  N  T  SA+SA A  
Sbjct: 571 YLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANT 630

Query: 330 AVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMI 389
           A + +G+ +H+ ++K G+  +     +LI +YSKCGSIE A   F  + +K V  W AMI
Sbjct: 631 ANIKQGKQIHAMMIKTGYDSETEASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMI 690

Query: 390 VGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGI 449
            G   HG  ++A+ LF +M ++G+ P  +TF+GVL+ACSH GLVN+G  YF  M  ++G+
Sbjct: 691 TGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMSKEHGL 750

Query: 450 EPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAAN 509
            P  EHY C+VD+L R   L  A+  IE MP+ P+ +IW +LLS    H N +IGE+AA 
Sbjct: 751 VPKPEHYVCVVDLLGRAALLCCAREFIEEMPIEPDAMIWRTLLSACTVHKNIEIGEFAAR 810

Query: 510 NLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFV 569
           +L+++ P+    YV+LSN+YA +G+WD     R+MMK RG +K+PG S IE +  +H F 
Sbjct: 811 HLLELEPEDSATYVLLSNMYAVSGKWDYRDRTRQMMKDRGVKKEPGRSWIEVKNSIHAFF 870

Query: 570 VGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAF 629
           VGD+ HP  ++I+  + ++  +    G+V D   +L  +E Q++K+     HSE+LA+AF
Sbjct: 871 VGDRLHPLAEQIYEYIDDLNERAGEIGYVQDRYNLLNDVE-QEQKDPTAYIHSEKLAVAF 929

Query: 630 GLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           GL+++ +  PIR++KNLRVCNDCH+  K +S I NR I+VRD  RFHHF+ G CSCKD+W
Sbjct: 930 GLLSLTNTMPIRVIKNLRVCNDCHNWIKFVSKISNRAIVVRDAYRFHHFEGGVCSCKDYW 989



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 128/480 (26%), Positives = 232/480 (48%), Gaps = 30/480 (6%)

Query: 36  ETQQLHALSVKTNLIYHSGISSRLLSLYV-DPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           + ++LHA   K+       + SRL+ +Y+    ++N   A  +FD I    ++  +N +I
Sbjct: 28  DAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDN---AIKLFDDI-PSSNVSFWNKVI 83

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGA-IKEGKQIHGLVFKLGF 153
              +  + + + L LF  ++   + PD  T   V++  +   A  +  +QIH  +   GF
Sbjct: 84  SGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHHGF 143

Query: 154 GFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDE 213
           G    V + L+ +Y+K G +DL + VF+ +  KD VSW  +I G  + G  + A+ LF +
Sbjct: 144 GSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQ 203

Query: 214 M------PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSW---------NAMIN 258
           M      P   +FS        S C K+E+ +       +  +V W         NA++ 
Sbjct: 204 MHKSAVIPTPYVFSSV-----LSACTKIELFK--LGEQLHGFIVKWGLSSETFVCNALVT 256

Query: 259 GYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDAT 318
            Y + G++ +A ++F  M  RD I++NS+I+G    G    AL+L E M +  + P+  T
Sbjct: 257 LYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVT 316

Query: 319 LVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS 378
           + S LSA A +    KG+ +HSY++K G   D ++   L+ +Y KC  IE+A   F    
Sbjct: 317 VASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTE 376

Query: 379 KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR 438
            + V  W  M+V  G  G  +++  +F +M   G+ P   T+  +L  C+  G ++ G +
Sbjct: 377 TENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQ 436

Query: 439 YFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNH 498
               +I   G +  +     L+D+  + G L+ A+  ++ +    + V W ++++G   H
Sbjct: 437 IHTQVIKS-GFQFNVYVCSVLIDMYAKHGELDTARGILQRL-REEDVVSWTAMIAGYTQH 494



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 101/383 (26%), Positives = 180/383 (46%), Gaps = 13/383 (3%)

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD 187
           + +G    G++ + K++H  +FK GF  +  + S L+ +Y   GE+D   ++FD +   +
Sbjct: 16  LFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLFDDIPSSN 75

Query: 188 LVSWNCLIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKCGKVEIAREI 241
           +  WN +I G + K      + LF  M      PD   F+         K    ++  +I
Sbjct: 76  VSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGK-APFQVTEQI 134

Query: 242 FYRMPNRNLVS----WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRF 297
             ++ +    S     N +I+ Y K G VD A  +F+ + ++D ++W +MI+G   NGR 
Sbjct: 135 HAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGRE 194

Query: 298 MEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLL 357
            EA+ L   M    V+P      S LSA   + +   G  +H +IVK G   +  +   L
Sbjct: 195 DEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNAL 254

Query: 358 IQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA 417
           + +YS+ G++ +A  +F  + ++    + ++I GL   G + +AL LF KM    MKP  
Sbjct: 255 VTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDC 314

Query: 418 ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIE 477
           +T   +L+AC+  G    G++  + +I   G+   +   G L+D+  +   +E A     
Sbjct: 315 VTVASLLSACASVGAGYKGKQLHSYVIK-MGMSSDLIIEGSLLDLYVKCFDIETAHEYFL 373

Query: 478 SMPMRPNFVIWMSLLSGARNHGN 500
           +     N V+W  +L      GN
Sbjct: 374 TTETE-NVVLWNVMLVAYGQLGN 395



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 89/169 (52%), Gaps = 9/169 (5%)

Query: 338 MHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGM 397
           +H+ I K+GF  + VLG+ LI +Y   G +++A+ +F  I    V  W  +I GL    +
Sbjct: 32  LHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLFDDIPSSNVSFWNKVISGLLAKKL 91

Query: 398 ATQALDLFNKMCRMGMKPTAITFIGVLNACS--HAGLVNDGRRYFNMMINDYGIEPTIEH 455
           A+Q L LF+ M    + P   TF  VL ACS   A      + +  ++ + +G  P +  
Sbjct: 92  ASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHHGFGSSPLV-- 149

Query: 456 YGC--LVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKD 502
             C  L+D+  + G+++ AK   E + ++ + V W++++SG   +G +D
Sbjct: 150 --CNPLIDLYSKNGHVDLAKLVFERLFLKDS-VSWVAMISGLSQNGRED 195



 Score = 42.7 bits (99), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 48/227 (21%), Positives = 100/227 (44%), Gaps = 20/227 (8%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           K+ +Q+HA+ +KT     +  S+ L++LY      ++  A+  F   +   ++V +N +I
Sbjct: 634 KQGKQIHAMMIKTGYDSETEASNVLITLY--SKCGSIEDAKREFFE-MPEKNVVSWNAMI 690

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEG-------KQIHGL 147
             Y  +    EA++LF ++    L+P++ T   V+   + +G + EG        + HGL
Sbjct: 691 TGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMSKEHGL 750

Query: 148 VFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD-DKDLVSWNCLIDGYVKKGEVEV 206
           V K     + +V   +V +  +   +   R   + M  + D + W  L+        +E+
Sbjct: 751 VPKP----EHYV--CVVDLLGRAALLCCAREFIEEMPIEPDAMIWRTLLSACTVHKNIEI 804

Query: 207 ---AMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNL 250
              A +   E+   D  ++  L + ++  GK +        M +R +
Sbjct: 805 GEFAARHLLELEPEDSATYVLLSNMYAVSGKWDYRDRTRQMMKDRGV 851


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 243/616 (39%), Positives = 366/616 (59%), Gaps = 10/616 (1%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           A+ IFD +    S + +N ++  YV N R  +A  LF    D  L+  N    C++ G  
Sbjct: 80  AKEIFDEMPCKNS-ISWNGMLAAYVQNGRIEDARRLFESKADWELISWN----CMMGGYV 134

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
           +   + + + I    F      D+   ++++S YA+ GE+   +R+F+    +D+ +W  
Sbjct: 135 KRNRLVDARGI----FDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTA 190

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSW 253
           ++ GYV+ G ++ A ++FD MP+++  SW  ++ G+ +C +++ ARE+F  MP +N+ SW
Sbjct: 191 MVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSW 250

Query: 254 NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL 313
           N MI GY + GD+  A   FD M  RD I+W ++IAGY  +G   EAL L   M      
Sbjct: 251 NTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGER 310

Query: 314 PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTV 373
            N +T  S LS  A +A L  G+ +H  +VK G      +G  L+ MY KCG+I+ A  V
Sbjct: 311 LNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIV 370

Query: 374 FRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLV 433
           F  I +K+V  W  MI G   HG   +AL LF  M + G+ P  +T +GVL+ACSH GLV
Sbjct: 371 FEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLV 430

Query: 434 NDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLS 493
           + G  YF  M  DYGI    +HY C++D+L R G L++A++ +++MP  P+   W +LL 
Sbjct: 431 DKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLG 490

Query: 494 GARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKD 553
            +R HGN ++GE AA  + ++ PD  G YV+LSN+YAA+G+W  V  +R  M+ RG +K 
Sbjct: 491 ASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKV 550

Query: 554 PGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKE 613
           PG S +E +  +H F VGD  HP+ D I++ L E+  K+K  G+V  T  VL  +E++ E
Sbjct: 551 PGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEELDLKMKKEGYVSSTKLVLHDVEEE-E 609

Query: 614 KEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNS 673
           K   L+ HSE+LA+AFG++ + +  PIR++KNLRVC DCH+  K +S I  R II+RD+ 
Sbjct: 610 KVHMLKYHSEKLAVAFGILAIPAGRPIRVIKNLRVCEDCHNAMKHISKIVGRLIILRDSH 669

Query: 674 RFHHFKNGSCSCKDFW 689
           RFHHF  G CSC D+W
Sbjct: 670 RFHHFNGGQCSCGDYW 685



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 97/353 (27%), Positives = 168/353 (47%), Gaps = 28/353 (7%)

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP 215
           D    ++++S YA+ G +   + +FD M  K+ +SWN ++  YV+ G +E A +LF+   
Sbjct: 60  DVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKA 119

Query: 216 DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDD 275
           D +L SW C++ G+ K  ++  AR IF RMP R+ VSWN MI+GY + G++  A  LF++
Sbjct: 120 DWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEE 179

Query: 276 MEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLV---------SALSAV 326
             +RD+ TW +M++GY  NG   EA  + + M   + +  +A +           A    
Sbjct: 180 SPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELF 239

Query: 327 AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWT 386
             +   N   W                   +I  Y++ G I  A   F  + ++    W 
Sbjct: 240 EAMPCQNVSSW-----------------NTMITGYAQNGDIAQARNFFDRMPQRDSISWA 282

Query: 387 AMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIND 446
           A+I G    G   +AL LF +M R G +    TF   L+ C+    +  G++    ++  
Sbjct: 283 AIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVK- 341

Query: 447 YGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
            G+E        L+ + C+ G +++A    E +  +   V W ++++G   HG
Sbjct: 342 AGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEK-EVVSWNTMIAGYARHG 393


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 251/666 (37%), Positives = 397/666 (59%), Gaps = 23/666 (3%)

Query: 38   QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
            +Q+H ++VK+ L     +++ L+++Y    +   ++AR +F+  ++H  L+ +N +I   
Sbjct: 924  KQVHGIAVKSGLDSDVSVANSLVNMY--SKMGCAYFAREVFND-MKHLDLISWNSMISSC 980

Query: 98   VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARL-GAIKEGKQIHGLVFKLGFGFD 156
              +    E++ LF DLL   L PD+FTL  V++  + L   +   +QIH    K G   D
Sbjct: 981  AQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNIAD 1040

Query: 157  KFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFD---- 212
             FV ++L+ +Y+K G+++    +F   DD DL  WN ++ GY+   + + A++LF     
Sbjct: 1041 SFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHK 1100

Query: 213  --EMPDRDLFSWTCLVDGFSKCGKV-------EIAREIFYRMPNRNLVSWNAMINGYMKA 263
              E  D+       L      CG +       +I         + +L   + +++ Y+K 
Sbjct: 1101 SGEKSDQ-----ITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKC 1155

Query: 264  GDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSAL 323
            GD+ +A  +F+ +   D + W SMI+G   NG   +AL +   M    V+P++ T  + +
Sbjct: 1156 GDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLI 1215

Query: 324  SAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVG 383
             A + +  L +GR +H+ ++K   V D  +GT L+ MY+KCG+IE A  +F+ ++ + + 
Sbjct: 1216 KASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIA 1275

Query: 384  HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMM 443
             W AM+VGL  HG A +A++LF  M   G++P  ++FIG+L+ACSHAGL ++   Y + M
Sbjct: 1276 LWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSM 1335

Query: 444  INDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDI 503
             NDYGIEP IEHY CLVD L R G ++EA   IE+MP + +  I  +LL   R  G+ + 
Sbjct: 1336 PNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVET 1395

Query: 504  GEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRG 563
            G+  A  L  + P     YV+LSNIYAAA +WD V++ R+MMK++  +KDPG S I+ + 
Sbjct: 1396 GKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKN 1455

Query: 564  VLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSE 623
            +LH FVV D+SHPQ D I+ K+ EM   ++  G+VPDT  VLL +ED+ EKE  L  HSE
Sbjct: 1456 MLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEFVLLDVEDE-EKERSLYYHSE 1514

Query: 624  RLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSC 683
            +LAIA+GLI+  + + IR++KNLRVC DCH+  K +S ++ REI++RD +RFHHF++G C
Sbjct: 1515 KLAIAYGLISTPASTTIRVIKNLRVCGDCHNAIKYISKVFEREIVLRDANRFHHFRDGVC 1574

Query: 684  SCKDFW 689
            SC D+W
Sbjct: 1575 SCGDYW 1580



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 127/428 (29%), Positives = 210/428 (49%), Gaps = 35/428 (8%)

Query: 121  DNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVF 180
            D  TL  V+   A    ++ GKQ+HG+  K G   D  V +SLV+MY+K G     R VF
Sbjct: 903  DAVTLLVVLAAVAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVF 962

Query: 181  DAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDR-----DLFSWTCLVDGF 229
            + M   DL+SWN +I    +    E ++ LF ++      PD       L + + L+DG 
Sbjct: 963  NDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGL 1022

Query: 230  SKCGKVEIAREI-FYRMPNRNLVS---WNAMINGYMKAGDVDSACELFDDMEIRDLITWN 285
            +      I+R+I  + +   N+        +I+ Y K+G ++ A  LF + +  DL  WN
Sbjct: 1023 N------ISRQIHVHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWN 1076

Query: 286  SMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKN 345
            +M+ GY +     +ALEL   +       +  TL +A  A   L +L++G+ +H++ +K 
Sbjct: 1077 AMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKA 1136

Query: 346  GFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLF 405
            GF  D  + + ++ MY KCG + +A  VF  IS      WT+MI G   +G   QAL ++
Sbjct: 1137 GFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIY 1196

Query: 406  NKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR-YFNMMINDYGIEPTIEHYGCLVDILC 464
            ++M +  + P   TF  ++ A S    +  GR+ + N++  D   +P +     LVD+  
Sbjct: 1197 HRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVG--TSLVDMYA 1254

Query: 465  RTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIK------VAPDT 518
            + G +E+A    + M +R N  +W ++L G   HGN +     A NL K      + PD 
Sbjct: 1255 KCGNIEDAYRLFKKMNVR-NIALWNAMLVGLAQHGNAE----EAVNLFKSMKSHGIEPDR 1309

Query: 519  IGCYVVLS 526
            +    +LS
Sbjct: 1310 VSFIGILS 1317



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 137/524 (26%), Positives = 223/524 (42%), Gaps = 65/524 (12%)

Query: 55   ISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRS-----HEALTL 109
            +S+ LL++Y      +L  AR +FD   +   LV +N ++  Y  +  S      E L L
Sbjct: 658  LSNNLLTMY--SKCGSLSSARQVFDTTPER-DLVTWNAILGAYAASVDSNDGNAQEGLHL 714

Query: 110  FCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAK 169
            F  L          TL  V+K     G +   + +HG   K+G  +D FV  +LV++Y+K
Sbjct: 715  FRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSK 774

Query: 170  FGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDRDLFSWT 223
             G +   R +FD M ++D+V WN ++ GYV+ G  + A +LF E       PD   FS  
Sbjct: 775  CGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDE--FSVQ 832

Query: 224  CLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDS-ACELFDDMEIRDLI 282
             +++G S+                   V+W+    G   A  V + A +L    +  D+ 
Sbjct: 833  LILNGVSE-------------------VNWD---EGKWLADQVQAYAAKLSLSDDNPDVF 870

Query: 283  TWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYI 342
             WN  ++     G    A+E    M   ++  +  TL+  L+AVAG   L  G+ +H   
Sbjct: 871  CWNKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQVHGIA 930

Query: 343  VKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQAL 402
            VK+G   D  +   L+ MYSK G    A  VF  +    +  W +MI       +  +++
Sbjct: 931  VKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESV 990

Query: 403  DLFNKMCRMGMKPTAITFIGVLNACSH--AGLVNDGRRYFNMMINDYGIEPTIEHYGCLV 460
            +LF  +   G+KP   T   VL ACS    GL N  R+     +    I  +      L+
Sbjct: 991  NLFIDLLHEGLKPDHFTLASVLRACSSLIDGL-NISRQIHVHALKTGNIADSFVAT-TLI 1048

Query: 461  DILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG--ARNHGNKDI---------GEYAAN 509
            D+  ++G +EEA+   ++     +   W +++ G    N G K +         GE +  
Sbjct: 1049 DVYSKSGKMEEAEFLFQNKD-DLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQ 1107

Query: 510  NLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKD 553
              +  A    GC V+L          D+  ++     K GF  D
Sbjct: 1108 ITLATAAKACGCLVLL----------DQGKQIHAHAIKAGFDSD 1141



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 96/424 (22%), Positives = 183/424 (43%), Gaps = 49/424 (11%)

Query: 37   TQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKC 96
            ++Q+H  ++KT  I  S +++ L+ +Y       +  A  +F        L  +N ++  
Sbjct: 1025 SRQIHVHALKTGNIADSFVATTLIDVYSKS--GKMEEAEFLFQN-KDDLDLACWNAMMFG 1081

Query: 97   YVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFD 156
            Y+      +AL LF  +       D  TL    K    L  + +GKQIH    K GF  D
Sbjct: 1082 YIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSD 1141

Query: 157  KFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD 216
              V S ++ MY K G++     VF+ +   D V+W  +I G V  G  + A++++  M  
Sbjct: 1142 LHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQ 1201

Query: 217  R----DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS----WNAMINGYMKAGDVDS 268
                 D +++  L+   S    +E  R++   +   + VS      ++++ Y K G+++ 
Sbjct: 1202 SRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIED 1261

Query: 269  ACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAG 328
            A  LF  M +R++  WN+M+ G   +G   EA+ L ++M    + P+  + +  LSA + 
Sbjct: 1262 AYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSH 1321

Query: 329  LAVLNKG-RWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTA 387
              + ++   ++HS  + N + ++                              ++ H++ 
Sbjct: 1322 AGLTSEAYEYLHS--MPNDYGIE-----------------------------PEIEHYSC 1350

Query: 388  MIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDY 447
            ++  LG  G+  +A  +      M  K +A     +L AC   G V  G+R    +   +
Sbjct: 1351 LVDALGRAGLVQEADKVIET---MPFKASASINRALLGACRIQGDVETGKRVAARL---F 1404

Query: 448  GIEP 451
             +EP
Sbjct: 1405 ALEP 1408



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 81/168 (48%), Gaps = 13/168 (7%)

Query: 335 GRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGM 394
           G+  H+ IV +G   D  L   L+ MYSKCGS+ SA  VF    ++ +  W A++     
Sbjct: 640 GKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAA 699

Query: 395 H-----GMATQALDLFNKMCRMGMKPTA-ITFIGVLNACSHAGLV--NDGRRYFNMMIND 446
                 G A + L LF ++ R  +  T  +T   VL  C ++G +   +G   + + I  
Sbjct: 700 SVDSNDGNAQEGLHLF-RLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKI-- 756

Query: 447 YGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG 494
            G+E  +   G LV+I  + G + +A+   + M  R + V+W  +L G
Sbjct: 757 -GLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRER-DVVLWNMMLKG 802


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 250/677 (36%), Positives = 405/677 (59%), Gaps = 17/677 (2%)

Query: 26  NILKFSSTHKETQQLHALSVKTNLIYHSGISS-RLLSLYVDPHINNLHYARSIFDRILQH 84
           ++++ + ++    QLHA +++  L+  S  +S  L+  Y+      +  A  +FD + + 
Sbjct: 75  SLIRAAPSNASAAQLHACALRLGLVRPSVFTSGSLVHAYL--RFGRISEAYKVFDEMSER 132

Query: 85  PSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQI 144
             +  +N ++     N R+ EA+ LF  ++   +  D  T+  V+     LG       +
Sbjct: 133 -DVPAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAGDTVTVSSVLPMCVLLGDQVLALVM 191

Query: 145 HGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEV 204
           H    K G   + FV ++L+ +Y K G ++  + VF  M+ +DLV+WN +I G  ++G+ 
Sbjct: 192 HVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQT 251

Query: 205 EVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREIFYRMPNR-----NLVSWNA 255
             A+K+F  M       D+ +   L    ++ G    A+ +   +  R     ++++ NA
Sbjct: 252 AAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGNA 311

Query: 256 MINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPN 315
           +++ Y K  ++++A  +FD M ++D ++WN++I GY  NG   EA+E    M   + L  
Sbjct: 312 IVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKA 371

Query: 316 -DATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVF 374
              T VS L A + L  L +G  MH+  +K G  VD  +GT LI +Y+KCG +  A+ +F
Sbjct: 372 IQGTFVSVLPAYSHLGALQQGMRMHALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLF 431

Query: 375 RAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVN 434
             + ++  G W A+I GLG+HG   +AL LF++M + G+KP  +TF+ +L ACSHAGLV+
Sbjct: 432 EKMPRRSTGPWNAIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAACSHAGLVD 491

Query: 435 DGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG 494
            GR +F++M   Y I P  +HY C+ D+L R G L+EA + I++MP++P+  +W +LL  
Sbjct: 492 QGRSFFDVMQVTYDIVPIAKHYACMADMLGRAGQLDEAFNFIQNMPIKPDSAVWGALLGA 551

Query: 495 ARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDP 554
            R HGN ++G+ A+ NL ++ P+ +G YV++SN+YA  G+WD V EVR +++++  +K P
Sbjct: 552 CRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTP 611

Query: 555 GSSSIEHRGVLHEFVVGDKS--HPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQK 612
           G SSIE +  ++ F  G+++  HPQ +EI ++L  +  K+++ G+V D + VL  +ED  
Sbjct: 612 GWSSIEVKRSVNVFYSGNQTEPHPQHEEIQAELRSLLAKIRSVGYVSDYSFVLQDVEDD- 670

Query: 613 EKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDN 672
           EKE  L NHSERLAIAFG+IN  SR+P+ I KNLRVC DCH+ TK +S I  REIIVRD+
Sbjct: 671 EKEHILNNHSERLAIAFGIINTPSRTPLHIYKNLRVCGDCHNATKYISQITEREIIVRDS 730

Query: 673 SRFHHFKNGSCSCKDFW 689
           +RFHHFK+G CSC DFW
Sbjct: 731 NRFHHFKDGHCSCGDFW 747



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 127/441 (28%), Positives = 213/441 (48%), Gaps = 21/441 (4%)

Query: 120 PDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK-FVLSSLVSMYAKFGEIDLGRR 178
           PD FT P +I+ A    +     Q+H    +LG      F   SLV  Y +FG I    +
Sbjct: 68  PDGFTFPSLIRAAP---SNASAAQLHACALRLGLVRPSVFTSGSLVHAYLRFGRISEAYK 124

Query: 179 VFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWT---------CLVDGF 229
           VFD M ++D+ +WN ++ G  +      A+ LF  M    +   T         C++ G 
Sbjct: 125 VFDEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAGDTVTVSSVLPMCVLLGD 184

Query: 230 SKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIA 289
                V     + + + ++ L   NA+I+ Y K G ++ A  +F  ME RDL+TWNS+I+
Sbjct: 185 QVLALVMHVYAVKHGL-DKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIIS 243

Query: 290 GYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVV 349
           G E  G+   AL++ + M    V P+  TLVS  SA+A        + +H Y+++ G+ V
Sbjct: 244 GCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDV 303

Query: 350 DGVL-GTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKM 408
           D ++ G  ++ MY+K  +IE+A  +F ++  +    W  +I G   +G+A +A++ +  M
Sbjct: 304 DDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHM 363

Query: 409 CRM-GMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTG 467
            +  G+K    TF+ VL A SH G +  G R   + I   G+   +    CL+D+  + G
Sbjct: 364 QKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHALSIK-IGLNVDVYVGTCLIDLYAKCG 422

Query: 468 YLEEAKSTIESMPMRPNFVIWMSLLS--GARNHGNKDIGEYAANNLIKVAPDTIGCYVVL 525
            L EA    E MP R     W +++S  G   HG + +  ++      + PD +  +V L
Sbjct: 423 KLAEAMLLFEKMPRRSTGP-WNAIISGLGVHGHGAEALTLFSRMQQEGIKPDHV-TFVSL 480

Query: 526 SNIYAAAGQWDKVSEVREMMK 546
               + AG  D+     ++M+
Sbjct: 481 LAACSHAGLVDQGRSFFDVMQ 501


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 250/671 (37%), Positives = 389/671 (57%), Gaps = 28/671 (4%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           ++ +QLH+  +K  +     +   LL LYV     ++  A  IFD      ++VL+NL++
Sbjct: 261 RKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKS--GDIEEALQIFDS-GDRTNVVLWNLML 317

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
             Y       ++  +F  +L   + P+ FT PC+++     G I  G+QIH L  K GF 
Sbjct: 318 VAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQ 377

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
            D +V   L+ MY+K+G +D  +R+ D +++KD+VSW  +I GYV+    + A++ F EM
Sbjct: 378 SDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEM 437

Query: 215 ------PDRDLFSWTCLVDGFSKCGKV-------EIAREIFYRMPNRNLVSWNAMINGYM 261
                 PD        L    S C  +       +I   ++    + ++  WN ++  Y 
Sbjct: 438 QACGIWPDN-----IGLASAISACAGIKAVHQGSQIHARVYVSGYSADVSIWNGLVYLYA 492

Query: 262 KAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVS 321
           + G    A   F+ +E ++ ITWN +I+G+  +G + EAL++   M       N  T VS
Sbjct: 493 RCGISKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVS 552

Query: 322 ALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKK 381
           ++SA A LA + +G+ +H+ ++K G+  +  +   LI +Y KCGSIE A   F  ++K+ 
Sbjct: 553 SISASANLADIKQGKQIHARVIKTGYTSETEISNALISLYGKCGSIEDAKMDFFEMTKRN 612

Query: 382 VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFN 441
              W  +I     HG   +ALDLF++M + G+KP+ +TF+GVL ACSH GLV +G  YF 
Sbjct: 613 EVSWNTIITCCSQHGRGLEALDLFDQMKQQGLKPSDVTFVGVLTACSHVGLVEEGLCYFK 672

Query: 442 MMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNK 501
            M N++GI P  +HY C+VDIL R G L+ AK  +E MP+  + ++W +LLS  + H N 
Sbjct: 673 SMSNEHGIHPRPDHYACVVDILGRAGQLDRAKRFVEEMPIPADSMVWRTLLSACKVHKNL 732

Query: 502 DIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEH 561
           +IGE+AA +L+++ P     YV+LSN YA  G+W    ++R++MK RG RK+PG S IE 
Sbjct: 733 EIGEFAAKHLLELEPHDSASYVLLSNAYAVTGKWASRDQIRKIMKDRGVRKEPGRSWIEV 792

Query: 562 RGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELEN- 620
           + V+H F VGD+ HP  D+I++ LS + ++L   G+  +   +      +KEKE +    
Sbjct: 793 KNVVHAFFVGDRLHPLADQIYNFLSHLNDRLYKIGYKQENYHLF----HEKEKEGKDPTA 848

Query: 621 --HSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHF 678
             HSE+LA+AFGL+++ S  P+R++KNLRVCNDCH+  K  SG+  REI++RD  RFHHF
Sbjct: 849 FVHSEKLAVAFGLMSLPSCMPLRVIKNLRVCNDCHTWMKFTSGVMGREIVLRDVYRFHHF 908

Query: 679 KNGSCSCKDFW 689
            NGSCSC D+W
Sbjct: 909 NNGSCSCGDYW 919



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 122/471 (25%), Positives = 234/471 (49%), Gaps = 19/471 (4%)

Query: 40  LHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVF 99
           +H    K      + + + L+SLY+     +   A  +F  +L   S V +N LI  +  
Sbjct: 165 IHVQVYKQGFFSETFVGNALISLYL--RCRSFRLADRVFCDMLYCDS-VTFNTLISGHAQ 221

Query: 100 NQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFV 159
                 AL +F ++    L PD+ T+  ++   + +G +++GKQ+H  + K G   D  +
Sbjct: 222 CGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIM 281

Query: 160 LSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM----- 214
             SL+ +Y K G+I+   ++FD+ D  ++V WN ++  Y +  ++  +  +F  M     
Sbjct: 282 EGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGV 341

Query: 215 -PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMING-----YMKAGDVDS 268
            P++  F++ C++   +  G++ +  +I + +  +N    +  ++G     Y K G +D 
Sbjct: 342 RPNK--FTYPCMLRTCTHTGEIGLGEQI-HSLTIKNGFQSDMYVSGVLIDMYSKYGWLDK 398

Query: 269 ACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAG 328
           A  + D +E +D+++W SMIAGY  +    EALE  + M    + P++  L SA+SA AG
Sbjct: 399 AQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAG 458

Query: 329 LAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAM 388
           +  +++G  +H+ +  +G+  D  +   L+ +Y++CG  + A + F AI  K+   W  +
Sbjct: 459 IKAVHQGSQIHARVYVSGYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGL 518

Query: 389 IVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYG 448
           I G    G+  +AL +F KM + G K    TF+  ++A ++   +  G++    +I   G
Sbjct: 519 ISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANLADIKQGKQIHARVIKT-G 577

Query: 449 IEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
                E    L+ +  + G +E+AK     M  R N V W ++++    HG
Sbjct: 578 YTSETEISNALISLYGKCGSIEDAKMDFFEMTKR-NEVSWNTIITCCSQHG 627



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 120/470 (25%), Positives = 223/470 (47%), Gaps = 15/470 (3%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYV 98
           ++HA ++   L  +  I + L+ LY       +  AR +F+ +    + V +  ++  Y 
Sbjct: 63  EIHAKAIICGLSGYRIIGNLLIDLYAKKGF--VRRARRVFEELSVRDN-VSWVAVLSGYA 119

Query: 99  FNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKF 158
            N    EA+ L+ ++    ++P  + L  ++    +    + G+ IH  V+K GF  + F
Sbjct: 120 QNGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETF 179

Query: 159 VLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP--- 215
           V ++L+S+Y +     L  RVF  M   D V++N LI G+ + G  + A+ +FDEM    
Sbjct: 180 VGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSG 239

Query: 216 -DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNL----VSWNAMINGYMKAGDVDSAC 270
              D  +   L+   S  G +   +++   +    +    +   ++++ Y+K+GD++ A 
Sbjct: 240 LSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEAL 299

Query: 271 ELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLA 330
           ++FD  +  +++ WN M+  Y       ++ ++   ML   V PN  T    L       
Sbjct: 300 QIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTG 359

Query: 331 VLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIV 390
            +  G  +HS  +KNGF  D  +  +LI MYSK G ++ A  +   I +K V  WT+MI 
Sbjct: 360 EIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIA 419

Query: 391 GLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR-YFNMMINDYGI 449
           G   H    +AL+ F +M   G+ P  I     ++AC+    V+ G + +  + ++ Y  
Sbjct: 420 GYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSA 479

Query: 450 EPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
           + +I  +  LV +  R G  +EA S+ E++  +   + W  L+SG    G
Sbjct: 480 DVSI--WNGLVYLYARCGISKEAFSSFEAIEHKEG-ITWNGLISGFAQSG 526



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 110/401 (27%), Positives = 200/401 (49%), Gaps = 15/401 (3%)

Query: 143 QIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKG 202
           +IH      G    + + + L+ +YAK G +   RRVF+ +  +D VSW  ++ GY + G
Sbjct: 63  EIHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQNG 122

Query: 203 EVEVAMKLFDEMPDRDLFSWTCLVDG-FSKCGKVEI---AREIFYRMPNRNLVS----WN 254
             E A++L+ EM    +     ++    S C K E+    R I  ++  +   S     N
Sbjct: 123 LGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGN 182

Query: 255 AMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLP 314
           A+I+ Y++      A  +F DM   D +T+N++I+G+   G    AL + + M +  + P
Sbjct: 183 ALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSP 242

Query: 315 NDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVF 374
           +  T+ S L+A + +  L KG+ +HSY++K G  +D ++   L+ +Y K G IE AL +F
Sbjct: 243 DSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIF 302

Query: 375 RAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVN 434
            +  +  V  W  M+V  G      ++ D+F +M   G++P   T+  +L  C+H G + 
Sbjct: 303 DSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIG 362

Query: 435 DGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG 494
            G +  ++ I + G +  +   G L+D+  + G+L++A+  ++ M    + V W S+++G
Sbjct: 363 LGEQIHSLTIKN-GFQSDMYVSGVLIDMYSKYGWLDKAQRILD-MIEEKDVVSWTSMIAG 420

Query: 495 ARNHG--NKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAG 533
              H    + +  +       + PD IG   + S I A AG
Sbjct: 421 YVQHEFCKEALETFKEMQACGIWPDNIG---LASAISACAG 458


>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
          Length = 492

 Score =  473 bits (1218), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 235/492 (47%), Positives = 321/492 (65%), Gaps = 1/492 (0%)

Query: 198 YVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMI 257
           Y K G V++A   FDE P RD+F    ++  +    +V  AR++F  MP R+LVSWN MI
Sbjct: 2   YAKAGRVDLARDAFDEAPLRDVFLCNVMLAAYVSRSEVAEARKVFDGMPMRDLVSWNTMI 61

Query: 258 NGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDA 317
           +GY   G+V  A E+FD  E RD  +W+SMI+ Y  + R  EALEL   M    ++P+  
Sbjct: 62  HGYAMRGEVGLAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREMHAASIIPDCI 121

Query: 318 TLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAI 377
           TLVS +SA + L  L  G  +H ++  N   +D  LGT LI MY+KCG IESA  VF  +
Sbjct: 122 TLVSVVSACSDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRM 181

Query: 378 SKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGR 437
            +K V  W++MI+GL  HG+  ++L LF+KM   GMKP  +TF+GVL AC+H GLV++G+
Sbjct: 182 PEKDVQTWSSMIIGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGK 241

Query: 438 RYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARN 497
           +YF  M   +GIEPT+EHYGC+VD+L R+G++EEA+  I SM   P+ +IW +LL   R 
Sbjct: 242 KYFRSMNEVHGIEPTVEHYGCMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALLGACRI 301

Query: 498 HGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSS 557
           H N +I E A   L  + P   G YV+LSNIYA A  W+ V+E+R+ +++   ++ PG S
Sbjct: 302 HKNVEIAEEAMAKLRVLDPLGDGHYVLLSNIYAQANSWEGVAEMRKTIRRDNIQRIPGRS 361

Query: 558 SIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAE 617
           SIE    +HEFV GD+ HP++ EI+  L EM ++LK AG+ P T  VL  I D++ KE  
Sbjct: 362 SIEWDEKIHEFVSGDRLHPRSKEIYRVLEEMMDRLKQAGYKPMTGLVLQDI-DEQSKERS 420

Query: 618 LENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHH 677
           L  HSE+LAIAF L+   +RS IRI KNLR C DCHS  KL+S +Y+R++IVRD +RFHH
Sbjct: 421 LAEHSEKLAIAFALLTTPARSTIRITKNLRACEDCHSAMKLISLVYDRKLIVRDRNRFHH 480

Query: 678 FKNGSCSCKDFW 689
           F  G CSCKD+W
Sbjct: 481 FSEGQCSCKDYW 492



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 119/250 (47%), Gaps = 11/250 (4%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           AR IFD      +   ++ +I  Y  ++RS EAL L+ ++    ++PD  TL  V+   +
Sbjct: 73  AREIFDGTEDRDAFS-WSSMISAYAKSRRSKEALELWREMHAASIIPDCITLVSVVSACS 131

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
            LGA+  G ++H  V       D  + ++L+ MYAK G+I+  +RVFD M +KD+ +W+ 
Sbjct: 132 DLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMPEKDVQTWSS 191

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNRN 249
           +I G    G    ++ LF +M    +     ++  ++   +  G V   ++ F  M   +
Sbjct: 192 MIIGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNEVH 251

Query: 250 LVS-----WNAMINGYMKAGDVDSACELFDDMEIR-DLITWNSMIAGYELNGRFMEALEL 303
            +      +  M++   ++G V+ A +L   M    D I W +++    ++     A E 
Sbjct: 252 GIEPTVEHYGCMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALLGACRIHKNVEIAEEA 311

Query: 304 LETMLIGDVL 313
           +  + + D L
Sbjct: 312 MAKLRVLDPL 321


>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 585

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 243/550 (44%), Positives = 335/550 (60%), Gaps = 31/550 (5%)

Query: 141 GKQIHGLVFKLGFGF-DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYV 199
           G  +H    + GF   D FV ++LV MYAK                              
Sbjct: 66  GASLHARALRSGFAAADLFVRTALVEMYAK-----------------------------T 96

Query: 200 KKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMING 259
             GE+ +A   FDE P RD+F    ++  +   G+V  AR++F  M  R+LVSWN MI+G
Sbjct: 97  AAGEIALARAAFDEAPRRDVFLCNVMLAAYVARGEVAEARKVFDGMSGRDLVSWNTMIHG 156

Query: 260 YMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATL 319
           Y   GDV  A E+FD    RD  +W+SMI+ Y       EALEL   M +  V P+  ++
Sbjct: 157 YAVRGDVGMAREIFDGTRDRDAFSWSSMISAYAKGRCSKEALELWREMRVAGVAPDCISM 216

Query: 320 VSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK 379
           VS LSA + +  L  G  +H ++  N   VD  LGT L+ MY+KCG IE++L VF A+  
Sbjct: 217 VSVLSACSAMGALAIGAEVHRFVESNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMPV 276

Query: 380 KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRY 439
           K V  W++MI+GL  HG+   AL LF++M   G++P  ITFIGVL AC+H GLVNDG++Y
Sbjct: 277 KDVLTWSSMIIGLANHGLGHDALSLFSEMISQGLQPNEITFIGVLIACTHVGLVNDGKKY 336

Query: 440 FNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
           F+ M + +G+ P +EHYGC+VD+L R G++EEA   I SM  +P+ +IW +LL   R H 
Sbjct: 337 FSSMSDVHGVVPRMEHYGCMVDLLGRAGHVEEAMELIRSMTFKPDPIIWRTLLGACRIHK 396

Query: 500 NKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSI 559
           N +I E A   L  + P   G YV+LSNIYA A  W+ V+E+R+ +++   ++ PG SSI
Sbjct: 397 NVEIAEEAMAKLKVLDPLADGHYVLLSNIYAQANSWEGVAEMRKTIRRENIQRVPGRSSI 456

Query: 560 EHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELE 619
           E    +HEFV GD+SHP+ +EI+  L EM ++L+ AG+ P T+ VL  I++Q +K A L 
Sbjct: 457 EWENTVHEFVSGDRSHPRIEEIYKMLEEMMDRLRQAGYRPMTSLVLQDIDEQSKKRA-LA 515

Query: 620 NHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFK 679
            HSE+LAIAFGL+   +RS +RI KNLR C DCHS  KL+S  Y+R++IVRD +RFHHF 
Sbjct: 516 EHSEKLAIAFGLLVTPARSTLRITKNLRACEDCHSAIKLISLAYDRKLIVRDRNRFHHFS 575

Query: 680 NGSCSCKDFW 689
            G CSCKD+W
Sbjct: 576 EGQCSCKDYW 585



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 119/252 (47%), Gaps = 11/252 (4%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           AR IFD      +   ++ +I  Y   + S EAL L+ ++    + PD  ++  V+   +
Sbjct: 166 AREIFDGTRDRDAFS-WSSMISAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSACS 224

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
            +GA+  G ++H  V       D  + ++LV MYAK G+I+   +VF AM  KD+++W+ 
Sbjct: 225 AMGALAIGAEVHRFVESNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVLTWSS 284

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNRN 249
           +I G    G    A+ LF EM  + L     ++  ++   +  G V   ++ F  M + +
Sbjct: 285 MIIGLANHGLGHDALSLFSEMISQGLQPNEITFIGVLIACTHVGLVNDGKKYFSSMSDVH 344

Query: 250 LV-----SWNAMINGYMKAGDVDSACELFDDMEIR-DLITWNSMIAGYELNGRFMEALEL 303
            V      +  M++   +AG V+ A EL   M  + D I W +++    ++     A E 
Sbjct: 345 GVVPRMEHYGCMVDLLGRAGHVEEAMELIRSMTFKPDPIIWRTLLGACRIHKNVEIAEEA 404

Query: 304 LETMLIGDVLPN 315
           +  + + D L +
Sbjct: 405 MAKLKVLDPLAD 416


>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
 gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 263/723 (36%), Positives = 397/723 (54%), Gaps = 94/723 (13%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYV 98
           ++H   +K     +  +++ L+ LY       L     +F++ + H  ++ +N +I CYV
Sbjct: 154 EVHGRILKCGFGRNKSLNNNLMGLY--SKCGKLKEVCQLFEK-MTHRDVISWNTMISCYV 210

Query: 99  FNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKF 158
                 EAL LF ++L   +LPD  T+  ++   A+L  ++ GK++H  +          
Sbjct: 211 LKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGS 270

Query: 159 VLSSLVSMYAKFGE---------------------------------IDLGRRVFDAMDD 185
           +L+ LV MY+K G+                                 ID  R++FD M++
Sbjct: 271 LLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMNE 330

Query: 186 KDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDR----------------DL---- 219
           + LVSW  ++ GYV+ G    +++LF +M      PD                 DL    
Sbjct: 331 RSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRSV 390

Query: 220 ----FSWTCLVDGF---------SKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDV 266
                ++  LVDGF         +KCGK++ A   F ++P ++  SWN+M++G+ ++G V
Sbjct: 391 HAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAASWNSMLDGFCRSGGV 450

Query: 267 DSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326
           D A + F+ +  +D+++WN+M+  Y  +  F E+ E+   M   +V P+  TL+S LS+ 
Sbjct: 451 DKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISLLSSC 510

Query: 327 AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWT 386
           A +  LN G W++ YI KN   +D +LGT LI MY KCG +E A  +F  I +K V  WT
Sbjct: 511 AKVGALNHGIWVNVYIEKNEIGIDAMLGTALIDMYGKCGCVEMAYEIFTQIIEKNVFVWT 570

Query: 387 AMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIND 446
           AM+    M G A +A+DL+ +M   G+KP  +TFI +L ACSH GLV++G +YFN + + 
Sbjct: 571 AMMAAYAMEGQALEAIDLYLEMEERGVKPDHVTFIALLAACSHGGLVDEGYKYFNKLRSF 630

Query: 447 YGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEY 506
           Y I PTI HYGC+VD+L R G+LEE    IE MP+ P+  IW SL+   R+H N ++ E 
Sbjct: 631 YNIIPTIHHYGCMVDLLGRVGHLEETVKFIERMPIEPDVSIWSSLMRACRSHHNVELAEQ 690

Query: 507 AANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLH 566
           A   LI++ P   G +V+LSNIYA AG+WD VS+VR  + + G  K PG + IE  GV+H
Sbjct: 691 AFKQLIEIDPTNNGAHVLLSNIYADAGRWDDVSKVRTKLHETGVPKQPGFTMIEQNGVVH 750

Query: 567 EFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLA 626
           EFV    S+  + +I   L ++  +L     + DTT                  HSERLA
Sbjct: 751 EFVA---SNLVSADILCMLQDIERRLLVKQELSDTTS----------------QHSERLA 791

Query: 627 IAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCK 686
           +AFGLIN +  SPIR+V ++R+C DCHSV KL+S  Y+REI++RDN RFH F +G CSCK
Sbjct: 792 VAFGLINNQENSPIRVVNSVRMCRDCHSVMKLISQAYDREIVIRDNYRFHRFTDGHCSCK 851

Query: 687 DFW 689
           D+W
Sbjct: 852 DYW 854



 Score =  232 bits (592), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 162/570 (28%), Positives = 274/570 (48%), Gaps = 84/570 (14%)

Query: 8   HSSP-IHALQQHLPSRLHW--NILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYV 64
           H  P ++    H   R HW  ++LK  S  +E   +HA  +  NLI+   I+S++L+  +
Sbjct: 19  HKPPTLNPKTSHSVLRPHWIIDLLKSCSNIREFSPIHAHLITANLIHDPEITSQVLAFLL 78

Query: 65  DPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFT 124
              +NNL  A  I       P  +++N L++  +      E L  +  ++ + +L D  T
Sbjct: 79  S--VNNLDCAHQILSYS-HEPESIIWNTLLENKLKEGCPQEVLECYYHMVTQGVLLDIST 135

Query: 125 LPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD 184
              +I    +   +K G ++HG + K GFG +K + ++L+ +Y+K G++    ++F+ M 
Sbjct: 136 FHFLIHACCKNFDVKLGSEVHGRILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQLFEKMT 195

Query: 185 DKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDR--------------------- 217
            +D++SWN +I  YV KG    A+ LFDEM      PD                      
Sbjct: 196 HRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKR 255

Query: 218 ------DLFSW------TCLVDGFSKCGKVEIAREIFYRMPNR--NLVSWNAMINGYMKA 263
                 D   W       CLVD +SKCGK++ A  +  R      ++V W  +++GY+K+
Sbjct: 256 LHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKS 315

Query: 264 GDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSAL 323
             +D A +LFD M  R L++W +M++GY   G + E+LEL + M   +V+P++  LV+ L
Sbjct: 316 NKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVL 375

Query: 324 SAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVG 383
           SA   L   + GR +H++IV  G +VDG LG  L+ +Y+KCG ++ AL  F  +  K   
Sbjct: 376 SACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAA 435

Query: 384 HWTAMIVGLGMHGMATQALDLFNKM----------------------------CRM---G 412
            W +M+ G    G   +A D FNK+                            C+M    
Sbjct: 436 SWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSN 495

Query: 413 MKPTAITFIGVLNACSHAGLVNDGRRYFNMMI--NDYGIEPTIEHYGCLVDILCRTGYLE 470
           +KP   T I +L++C+  G +N G  + N+ I  N+ GI+  +     L+D+  + G +E
Sbjct: 496 VKPDKTTLISLLSSCAKVGALNHG-IWVNVYIEKNEIGIDAMLG--TALIDMYGKCGCVE 552

Query: 471 EAKSTIESMPMRPNFVIWMSLLSGARNHGN 500
            A   I +  +  N  +W ++++     G 
Sbjct: 553 MAYE-IFTQIIEKNVFVWTAMMAAYAMEGQ 581



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 115/457 (25%), Positives = 203/457 (44%), Gaps = 46/457 (10%)

Query: 138 IKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDG 197
           I+E   IH  +       D  + S +++       +D   ++     + + + WN L++ 
Sbjct: 48  IREFSPIHAHLITANLIHDPEITSQVLAFLLSVNNLDCAHQILSYSHEPESIIWNTLLEN 107

Query: 198 YVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREIFYRMPN----RN 249
            +K+G  +  ++ +  M  +    D+ ++  L+    K   V++  E+  R+      RN
Sbjct: 108 KLKEGCPQEVLECYYHMVTQGVLLDISTFHFLIHACCKNFDVKLGSEVHGRILKCGFGRN 167

Query: 250 LVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLI 309
               N ++  Y K G +   C+LF+ M  RD+I+WN+MI+ Y L G + EAL+L + ML+
Sbjct: 168 KSLNNNLMGLYSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGMYREALDLFDEMLV 227

Query: 310 GDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCG---- 365
             VLP++ T+VS +S  A L  L  G+ +H YIV N   + G L   L+ MYSKCG    
Sbjct: 228 SGVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDE 287

Query: 366 -----------------------------SIESALTVFRAISKKKVGHWTAMIVGLGMHG 396
                                         I+ A  +F  ++++ +  WT M+ G    G
Sbjct: 288 AHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGG 347

Query: 397 MATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHY 456
              ++L+LF +M    + P  +  + VL+AC H    + GR     ++  YG+       
Sbjct: 348 YYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRSVHAFIVT-YGMLVDGFLG 406

Query: 457 GCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAP 516
             L+D+  + G L+EA  T E +P + +   W S+L G    G  D    A +   K+  
Sbjct: 407 NALLDLYAKCGKLDEALRTFEQLPCK-SAASWNSMLDGFCRSGGVD---KARDFFNKIPE 462

Query: 517 DTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKD 553
             I  +  + N Y     +++  E+   M+    + D
Sbjct: 463 KDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPD 499


>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 904

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 255/691 (36%), Positives = 400/691 (57%), Gaps = 45/691 (6%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYV 98
           Q+H L +K +      + + L+  Y +     L  AR +FD + +  ++V +  +I  Y 
Sbjct: 154 QIHGLIIKMDYAKDLFVQNSLVHFYAE--CGELDCARKVFDEMSER-NVVSWTSMICGYA 210

Query: 99  FNQRSHEALTLFCDLL-DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
             + + +A+ LF  ++ D  ++P++ T+ CVI   A+L  ++ G++++  +   G   + 
Sbjct: 211 RREFAKDAVDLFFRMVRDEDVIPNSVTMVCVISACAKLEDLETGEKVYDFIRDSGIEVND 270

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM--- 214
            ++S+LV MY K   ID+ +R+FD     +L   N +   YV++G  + A+ + + M   
Sbjct: 271 LMISALVDMYMKCNAIDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEALGVLNLMMDS 330

Query: 215 ---PDR-----------------------------DLFSW----TCLVDGFSKCGKVEIA 238
              PDR                                SW      L+D + KC + + A
Sbjct: 331 GIRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTA 390

Query: 239 REIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFM 298
             IF RM N+ +V+WN+++ GY++ G+VD+A E F+ M  +++++WN++I+       + 
Sbjct: 391 FRIFDRMSNKTVVTWNSIVAGYIENGEVDAAWETFNTMPEKNIVSWNTIISALVQENMYE 450

Query: 299 EALELLETMLIGDVLPNDA-TLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLL 357
           EA+E+   M   + +  D  T++S  SA   L  L+  +W++ YI KN   +D  LGT L
Sbjct: 451 EAIEVFHYMQSQECVNVDGVTMMSIASACGHLGALDLAKWIYYYIEKNRIQLDVRLGTTL 510

Query: 358 IQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA 417
           + M+S+CG  ESA+++F +++ + V  WTA I  + M G   +A++LFN+M   G+KP  
Sbjct: 511 VDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNVERAIELFNEMIEQGLKPDG 570

Query: 418 ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIE 477
           + FIG L AC H GLV  G+  FN M   +G+ P   HYGC+VD+L R G LEEA   I+
Sbjct: 571 VVFIGALTACCHGGLVQQGKEIFNSMEKLHGVSPEDVHYGCMVDLLGRAGLLEEALQLIK 630

Query: 478 SMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDK 537
            MP  PN VIW SLL+  R  GN ++  +AA  +  +AP+  G YV+LSN+YA+AG+W+ 
Sbjct: 631 DMPTEPNDVIWNSLLAACRVQGNVEMAAFAAEKIQVLAPERTGSYVLLSNVYASAGRWND 690

Query: 538 VSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGH 597
           +++VR  MK++G RK PG+S I+ RG  HEF  GD+SHP+  +I + L E+  +    GH
Sbjct: 691 MAKVRLSMKEKGLRKPPGTSVIQIRGKTHEFTSGDESHPEMRKIEAMLDELSQRASDLGH 750

Query: 598 VPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTK 657
           VPD + VL+ + D++EK   L  HSE+LA+AFGLI+    + IRIVKNLRVC+ CHS  K
Sbjct: 751 VPDLSNVLMDV-DEQEKIFMLSRHSEKLAMAFGLISSNKGTTIRIVKNLRVCSYCHSFAK 809

Query: 658 LLSGIYNREIIVRDNSRFHHFKNGSCSCKDF 688
             S +YNREII+RDN+RFH  + G CSC DF
Sbjct: 810 FASKVYNREIILRDNNRFHFIRQGKCSCSDF 840



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 125/454 (27%), Positives = 216/454 (47%), Gaps = 42/454 (9%)

Query: 70  NLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVI 129
           +L +A+ +F+    + +  +YN LI+ Y  +    EA+ LF  +++  + PD +T P  +
Sbjct: 81  SLSFAKEVFENGESYGTCFMYNSLIRGYASSGLCKEAILLFIRMMNSGISPDKYTFPFGL 140

Query: 130 KGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLV 189
              A+      G QIHGL+ K+ +  D FV +SLV  YA+ GE+D  R+VFD M ++++V
Sbjct: 141 SVCAKSRDKGNGIQIHGLIIKMDYAKDLFVQNSLVHFYAECGELDCARKVFDEMSERNVV 200

Query: 190 SWNCLIDGYVKKGEVEVAMKLFDEM-PDRDLF----SWTCLVDGFSKCGKVEIAREIFYR 244
           SW  +I GY ++   + A+ LF  M  D D+     +  C++   +K   +E   +++  
Sbjct: 201 SWTSMICGYARREFAKDAVDLFFRMVRDEDVIPNSVTMVCVISACAKLEDLETGEKVYDF 260

Query: 245 MPNR----NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEA 300
           + +     N +  +A+++ YMK   +D A  LFD+    +L   N+M + Y   G   EA
Sbjct: 261 IRDSGIEVNDLMISALVDMYMKCNAIDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEA 320

Query: 301 LELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQM 360
           L +L  M+   + P+  +++SA+S+ + L  +  G+  H Y+++NGF     +   LI M
Sbjct: 321 LGVLNLMMDSGIRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDM 380

Query: 361 YSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKM------------ 408
           Y KC   ++A  +F  +S K V  W +++ G   +G    A + FN M            
Sbjct: 381 YMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYIENGEVDAAWETFNTMPEKNIVSWNTII 440

Query: 409 ---CRMGMKPTAI-----------------TFIGVLNACSHAGLVNDGRRYFNMMINDYG 448
               +  M   AI                 T + + +AC H G + D  ++    I    
Sbjct: 441 SALVQENMYEEAIEVFHYMQSQECVNVDGVTMMSIASACGHLGAL-DLAKWIYYYIEKNR 499

Query: 449 IEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMR 482
           I+  +     LVD+  R G  E A S   S+  R
Sbjct: 500 IQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNR 533



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 112/450 (24%), Positives = 201/450 (44%), Gaps = 28/450 (6%)

Query: 137 AIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFG---EIDLGRRVFDAMDD-KDLVSWN 192
            I E K  H  + K G   D   ++ LV+   + G    +   + VF+  +       +N
Sbjct: 43  TIDELKMFHLSLTKQGLDDDVSAITKLVARSCELGTRESLSFAKEVFENGESYGTCFMYN 102

Query: 193 CLIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKCGK-------VEIAR 239
            LI GY   G  + A+ LF  M      PD+  F +     G S C K       ++I  
Sbjct: 103 SLIRGYASSGLCKEAILLFIRMMNSGISPDKYTFPF-----GLSVCAKSRDKGNGIQIHG 157

Query: 240 EIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFME 299
            I      ++L   N++++ Y + G++D A ++FD+M  R++++W SMI GY       +
Sbjct: 158 LIIKMDYAKDLFVQNSLVHFYAECGELDCARKVFDEMSERNVVSWTSMICGYARREFAKD 217

Query: 300 ALELLETMLIG-DVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLI 358
           A++L   M+   DV+PN  T+V  +SA A L  L  G  ++ +I  +G  V+ ++ + L+
Sbjct: 218 AVDLFFRMVRDEDVIPNSVTMVCVISACAKLEDLETGEKVYDFIRDSGIEVNDLMISALV 277

Query: 359 QMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI 418
            MY KC +I+ A  +F       +    AM       G+  +AL + N M   G++P  I
Sbjct: 278 DMYMKCNAIDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEALGVLNLMMDSGIRPDRI 337

Query: 419 TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIES 478
           + +  +++CS    +  G+     ++ + G E        L+D+  +    + A    + 
Sbjct: 338 SMLSAISSCSQLRNILWGKSCHGYVLRN-GFESWDNICNALIDMYMKCHRQDTAFRIFDR 396

Query: 479 MPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIK---VAPDTIGCYVVLSNIYAAAGQW 535
           M  +   V W S+++G   +G  D      N + +   V+ +TI   +V  N+Y  A + 
Sbjct: 397 MSNK-TVVTWNSIVAGYIENGEVDAAWETFNTMPEKNIVSWNTIISALVQENMYEEAIEV 455

Query: 536 DKVSEVREMMKKRGFRKDPGSSSIEHRGVL 565
               + +E +   G      +S+  H G L
Sbjct: 456 FHYMQSQECVNVDGVTMMSIASACGHLGAL 485


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 247/663 (37%), Positives = 383/663 (57%), Gaps = 12/663 (1%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           ++ +QLH+  +K  + +       LL LYV     ++  A  IF+ +    ++VL+NL++
Sbjct: 262 QKGKQLHSYLLKAGMSFDYITEGSLLDLYVK--CGDIETAHDIFN-LGDRTNVVLWNLML 318

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
             Y       ++  +F  +    + P+ FT PC+++     G I+ G+QIH L  K GF 
Sbjct: 319 VAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFE 378

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
            D +V   L+ MY+K+G +D  R++ + ++ +D+VSW  +I GYV+    E A+  F EM
Sbjct: 379 SDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEM 438

Query: 215 PDRDLFSWTC-LVDGFSKCGKVEIARE-------IFYRMPNRNLVSWNAMINGYMKAGDV 266
            D  ++     L    S C  ++  R+       ++      ++  WN ++N Y + G  
Sbjct: 439 QDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRS 498

Query: 267 DSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326
           + A  LF ++E +D ITWN +I+G+  +  + +AL +   M       N  T +SA+SA+
Sbjct: 499 EEAFSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISAL 558

Query: 327 AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWT 386
           A LA + +G+ +H   VK G   +  +   LI +Y KCGSIE A  +F  +S +    W 
Sbjct: 559 ANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWN 618

Query: 387 AMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIND 446
            +I     HG   +ALDLF++M + G+KP  +TFIGVL ACSH GLV +G  YF  M N 
Sbjct: 619 TIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNV 678

Query: 447 YGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEY 506
           YG+ P  +HY C+VDIL R G L+ A+  ++ MP+  N +IW +LLS  + H N +IGE 
Sbjct: 679 YGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGEL 738

Query: 507 AANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLH 566
           AA +L+++ P     YV+LSN YA  G+W    +VR+MMK RG RK+PG S IE +  +H
Sbjct: 739 AAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVH 798

Query: 567 EFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLA 626
            F VGD+ HP +D+I+  LSE+ ++L   G+  +    L   ++Q++K+     HSE+LA
Sbjct: 799 AFFVGDRLHPLSDQIYKFLSELNDRLSKIGYKQENPN-LFHEKEQEQKDPTAFVHSEKLA 857

Query: 627 IAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCK 686
           +AFGL+ +    P+R++KNLRVC+DCHS  K  S +  REI++RD  RFHHF +GSCSC 
Sbjct: 858 VAFGLMTLPPCIPLRVIKNLRVCDDCHSWMKCTSEVTRREIVLRDVYRFHHFNSGSCSCG 917

Query: 687 DFW 689
           D+W
Sbjct: 918 DYW 920



 Score =  192 bits (487), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 124/473 (26%), Positives = 232/473 (49%), Gaps = 15/473 (3%)

Query: 36  ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIK 95
           + + +HA   K      + + + L++LY+     +   A  +F  +L     V +N LI 
Sbjct: 162 QGRMIHAQVYKQAFCSETFVGNALIALYLG--FGSFKLAERVFCDML-FCDRVTFNTLIS 218

Query: 96  CYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF 155
            +        AL +F ++    L PD  T+  ++   A +G +++GKQ+H  + K G  F
Sbjct: 219 GHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSF 278

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP 215
           D     SL+ +Y K G+I+    +F+  D  ++V WN ++  Y +  ++  + ++F +M 
Sbjct: 279 DYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQ 338

Query: 216 DRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMING-----YMKAGDV 266
              +    F++ C++   +  G++E+  +I + +  +N    +  ++G     Y K G +
Sbjct: 339 ATGIHPNQFTYPCILRTCTCTGQIELGEQI-HSLSIKNGFESDMYVSGVLIDMYSKYGCL 397

Query: 267 DSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326
           D A ++ + +E RD+++W SMIAGY  +    EAL   + M    V P++  L SA SA 
Sbjct: 398 DKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASAC 457

Query: 327 AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWT 386
           AG+  + +G  +H+ +  +G+  D  +   L+ +Y++CG  E A ++FR I  K    W 
Sbjct: 458 AGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEITWN 517

Query: 387 AMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIND 446
            +I G G   +  QAL +F KM + G K    TFI  ++A ++   +  G++     +  
Sbjct: 518 GLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKT 577

Query: 447 YGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
            G     E    L+ +  + G +E+AK     M +R N V W ++++    HG
Sbjct: 578 -GHTSETEVANALISLYGKCGSIEDAKMIFSEMSLR-NEVSWNTIITSCSQHG 628



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 120/466 (25%), Positives = 216/466 (46%), Gaps = 17/466 (3%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHY-ARSIFDRILQHPSLVLYNLLIKCY 97
           ++HA SV   L     I + L+ LY     N L + AR +F   L     V +  ++  Y
Sbjct: 64  EIHATSVVRGLGADRLIGNLLIDLYAK---NGLVWQARQVFKE-LSSRDHVSWVAMLSGY 119

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
             +    EA  L+  +    ++P  + L  V+    +     +G+ IH  V+K  F  + 
Sbjct: 120 AQSGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSET 179

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP-- 215
           FV ++L+++Y  FG   L  RVF  M   D V++N LI G+ + G  E A+++FDEM   
Sbjct: 180 FVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLS 239

Query: 216 --DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNL----VSWNAMINGYMKAGDVDSA 269
               D  +   L+   +  G ++  +++   +    +    ++  ++++ Y+K GD+++A
Sbjct: 240 GLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETA 299

Query: 270 CELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGL 329
            ++F+  +  +++ WN M+  Y       ++ E+   M    + PN  T    L      
Sbjct: 300 HDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCT 359

Query: 330 AVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMI 389
             +  G  +HS  +KNGF  D  +  +LI MYSK G ++ A  +   + K+ V  WT+MI
Sbjct: 360 GQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMI 419

Query: 390 VGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR-YFNMMINDYG 448
            G   H    +AL  F +M   G+ P  I      +AC+    +  G + +  + ++ Y 
Sbjct: 420 AGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYA 479

Query: 449 IEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG 494
            + +I  +  LV++  R G  EEA S    +  +   + W  L+SG
Sbjct: 480 ADISI--WNTLVNLYARCGRSEEAFSLFREIEHKDE-ITWNGLISG 522



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 108/394 (27%), Positives = 191/394 (48%), Gaps = 24/394 (6%)

Query: 143 QIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKG 202
           +IH      G G D+ + + L+ +YAK G +   R+VF  +  +D VSW  ++ GY + G
Sbjct: 64  EIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSG 123

Query: 203 EVEVAMKLFDEMPDRDLFSWTCLVDG-------FSKCGKVEI---AREIFYRMPNRNLVS 252
             + A +L+ +M       WT ++          S C K ++    R I  ++  +   S
Sbjct: 124 LGKEAFRLYSQM------HWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCS 177

Query: 253 ----WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETML 308
                NA+I  Y+  G    A  +F DM   D +T+N++I+G+   G    AL++ + M 
Sbjct: 178 ETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQ 237

Query: 309 IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIE 368
           +  + P+  T+ S L+A A +  L KG+ +HSY++K G   D +    L+ +Y KCG IE
Sbjct: 238 LSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIE 297

Query: 369 SALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACS 428
           +A  +F    +  V  W  M+V  G      ++ ++F +M   G+ P   T+  +L  C+
Sbjct: 298 TAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCT 357

Query: 429 HAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIW 488
             G +  G +  ++ I + G E  +   G L+D+  + G L++A+  +E +  R + V W
Sbjct: 358 CTGQIELGEQIHSLSIKN-GFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKR-DVVSW 415

Query: 489 MSLLSGARNHG--NKDIGEYAANNLIKVAPDTIG 520
            S+++G   H    + +  +       V PD IG
Sbjct: 416 TSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIG 449


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 259/707 (36%), Positives = 408/707 (57%), Gaps = 48/707 (6%)

Query: 28  LKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSL 87
           L  ++T  +  +LH+L +   L +    S++L++ Y   H  +   + S+F       ++
Sbjct: 23  LASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYA--HFRDPTSSFSVFRLASPSNNV 80

Query: 88  VLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGL 147
            L+N +I+    N    EAL+L+ +     L PD +T P VI   A L   +  K IH  
Sbjct: 81  YLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDR 140

Query: 148 VFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKG----E 203
           V  +GFG D ++ ++L+ MY +F ++D  R+VF+ M  +D+VSWN LI GY   G     
Sbjct: 141 VLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEA 200

Query: 204 VEV---AMKLFDEMPDR---DLFSWTC--------------------------------- 224
           +E+   ++KLF EM ++   DL + T                                  
Sbjct: 201 LEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTAS 260

Query: 225 --LVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLI 282
             L++ ++KCG +  ++E+F  M  ++ VSWN+MIN Y++ G +  + ++F++M+ RD+I
Sbjct: 261 NILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVFENMKARDII 320

Query: 283 TWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYI 342
           TWN++IA    +      L ++  M    V P+ AT++S L   + LA   +G+ +H  I
Sbjct: 321 TWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCI 380

Query: 343 VKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQAL 402
            K G   D  +G +LI+MYSKCGS+ ++  VF+ +  K V  WTA+I   GM+G   +A+
Sbjct: 381 FKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAV 440

Query: 403 DLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDI 462
             F +M   G+ P  + F+ ++ ACSH+GLV +G  YF+ M  DY IEP IEHY C+VD+
Sbjct: 441 RAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDL 500

Query: 463 LCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCY 522
           L R+  L++A+  I SMP++P+  IW +LLS  R  G+ +I E  +  +I++ PD  G Y
Sbjct: 501 LSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTGYY 560

Query: 523 VVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIH 582
           V++SNIYAA G+WD+V  +R+ +K RG +KDPG S +E +  ++ F  G K   Q +E++
Sbjct: 561 VLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFFEQFEEVN 620

Query: 583 SKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRI 642
             L  +   +   G++ +   VL  I D+ EK   L  HSERLAIAFGL+N K  +P+++
Sbjct: 621 KLLGMLAGLMAKEGYIANLQFVLHDI-DEDEKRDILCGHSERLAIAFGLLNTKPGTPLQV 679

Query: 643 VKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           +KNLRVC DCH+VTK +S I  RE++VRD +RFH FK+G+CSC D+W
Sbjct: 680 MKNLRVCEDCHTVTKYISKIVQRELLVRDANRFHVFKDGACSCGDYW 726



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 96/185 (51%), Gaps = 6/185 (3%)

Query: 318 TLVSALS-AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFR- 375
           TL S++S A+A  A   +   +HS I+  G     +    LI  Y+      S+ +VFR 
Sbjct: 14  TLFSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRL 73

Query: 376 AISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVN- 434
           A     V  W ++I  L  +G+ ++AL L+++  R+ ++P   TF  V+NAC  AGL++ 
Sbjct: 74  ASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINAC--AGLLDF 131

Query: 435 DGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG 494
           +  +  +  + D G    +     L+D+ CR   L++A+   E MP+R + V W SL+SG
Sbjct: 132 EMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLR-DVVSWNSLISG 190

Query: 495 ARNHG 499
              +G
Sbjct: 191 YNANG 195


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 253/665 (38%), Positives = 387/665 (58%), Gaps = 16/665 (2%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           K  ++ HA  +K   +    I + L+S+YV     ++  AR +FD + +   +  +N++I
Sbjct: 179 KLGKEFHAQVIKVGFVSDFRIGTALVSMYVKG--GSMDGARQVFDGLYKR-DVSTFNVMI 235

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
             Y  +    +A  LF  +      P+  +   ++ G +   A+  GK +H      G  
Sbjct: 236 GGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLV 295

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
            D  V ++L+ MY   G I+  RRVFD M  +D+VSW  +I GY +   +E A  LF  M
Sbjct: 296 DDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATM 355

Query: 215 ------PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMP----NRNLVSWNAMINGYMKAG 264
                 PDR   ++  +++  +    + +AREI  ++       +L+   A+++ Y K G
Sbjct: 356 QEEGIQPDR--ITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCG 413

Query: 265 DVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS 324
            +  A ++FD M  RD+++W++MI  Y  NG   EA E    M   +V P+  T ++ L+
Sbjct: 414 AIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLN 473

Query: 325 AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGH 384
           A   L  L+ G  +++  +K   V    +G  LI M  K GSIE A  +F  + ++ V  
Sbjct: 474 ACGHLGALDLGMEIYTQAIKADLVSHIPVGNALINMNVKHGSIERARYIFENMVQRDVVT 533

Query: 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMI 444
           W  MI G  +HG A +ALDLF++M +   +P ++TF+GVL+ACS AG V +GRR+F+ ++
Sbjct: 534 WNVMIGGYSLHGNAREALDLFDRMLKERFRPNSVTFVGVLSACSRAGFVEEGRRFFSYLL 593

Query: 445 NDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIG 504
           +  GI PT+E YGC+VD+L R G L+EA+  I  MP++PN  IW +LL+  R +GN D+ 
Sbjct: 594 DGRGIVPTMELYGCMVDLLGRAGELDEAELLINRMPLKPNSSIWSTLLAACRIYGNLDVA 653

Query: 505 EYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGV 564
           E AA   +   P     YV LS++YAAAG W+ V++VR++M+ RG RK+ G + IE  G 
Sbjct: 654 ERAAERCLMSEPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGVRKEQGCTWIEVEGK 713

Query: 565 LHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSER 624
           LH FVV D+SHPQ  EI+++L+ +   +K  G++P T  VL  + +Q EKE  +  HSE+
Sbjct: 714 LHTFVVEDRSHPQAGEIYAELARLMTAIKREGYIPVTQNVLHNVGEQ-EKEEAISYHSEK 772

Query: 625 LAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCS 684
           LAIA+G++++ S +PIRI KNLRVC DCHS +K +S +  REII RD SRFHHFKNG CS
Sbjct: 773 LAIAYGVLSLPSGAPIRIFKNLRVCGDCHSASKFISKVTGREIIARDASRFHHFKNGVCS 832

Query: 685 CKDFW 689
           C D+W
Sbjct: 833 CGDYW 837



 Score =  228 bits (580), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 141/441 (31%), Positives = 230/441 (52%), Gaps = 15/441 (3%)

Query: 70  NLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVI 129
           N+  AR  FD + ++ ++V +N +I  Y       EA  LF  ++D  + P   T   V+
Sbjct: 111 NMLEARQTFDSV-ENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVL 169

Query: 130 KGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLV 189
              +    +K GK+ H  V K+GF  D  + ++LVSMY K G +D  R+VFD +  +D+ 
Sbjct: 170 DACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVS 229

Query: 190 SWNCLIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKCGKVEIAREIFY 243
           ++N +I GY K G+ E A +LF  M      P+R   S+  ++DG S    +   + +  
Sbjct: 230 TFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNR--ISFLSILDGCSTPEALAWGKAVHA 287

Query: 244 RMPNRNLVS----WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFME 299
           +  N  LV       A+I  YM  G ++ A  +FD M++RD+++W  MI GY  N    +
Sbjct: 288 QCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIED 347

Query: 300 ALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQ 359
           A  L  TM    + P+  T +  ++A A  A L+  R +HS +V+ GF  D ++ T L+ 
Sbjct: 348 AFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALVH 407

Query: 360 MYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAIT 419
           MY+KCG+I+ A  VF A+S++ V  W+AMI     +G   +A + F+ M R  ++P  +T
Sbjct: 408 MYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVT 467

Query: 420 FIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM 479
           +I +LNAC H G ++ G   +   I    +   I     L+++  + G +E A+   E+M
Sbjct: 468 YINLLNACGHLGALDLGMEIYTQAIKA-DLVSHIPVGNALINMNVKHGSIERARYIFENM 526

Query: 480 PMRPNFVIWMSLLSGARNHGN 500
             R + V W  ++ G   HGN
Sbjct: 527 VQR-DVVTWNVMIGGYSLHGN 546



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 115/415 (27%), Positives = 208/415 (50%), Gaps = 21/415 (5%)

Query: 141 GKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVK 200
           GKQ+   + + G   + + L++L+ +++  G +   R+ FD++++K +V+WN +I GY +
Sbjct: 80  GKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTFDSVENKTVVTWNAIIAGYAQ 139

Query: 201 KGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS---- 252
            G V+ A  LF +M D      + ++  ++D  S    +++ +E   ++     VS    
Sbjct: 140 LGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRI 199

Query: 253 WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDV 312
             A+++ Y+K G +D A ++FD +  RD+ T+N MI GY  +G   +A +L   M     
Sbjct: 200 GTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGF 259

Query: 313 LPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALT 372
            PN  + +S L   +    L  G+ +H+  +  G V D  + T LI+MY  CGSIE A  
Sbjct: 260 KPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARR 319

Query: 373 VFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGL 432
           VF  +  + V  WT MI G   +     A  LF  M   G++P  IT+I ++NAC+ +  
Sbjct: 320 VFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSAD 379

Query: 433 VNDGRRYFNMMIN-DYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSL 491
           ++  R   + ++   +G +  ++    LV +  + G +++A+   ++M  R + V W ++
Sbjct: 380 LSLAREIHSQVVRAGFGTDLLVDT--ALVHMYAKCGAIKDARQVFDAMS-RRDVVSWSAM 436

Query: 492 LSGARNHGNKDIGEYAAN--NLIK---VAPDTIGCYVVLSNIYAAAGQWDKVSEV 541
           +     +G    GE A    +L+K   V PD +  Y+ L N     G  D   E+
Sbjct: 437 IGAYVENG---CGEEAFETFHLMKRNNVEPDVV-TYINLLNACGHLGALDLGMEI 487



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 147/307 (47%), Gaps = 5/307 (1%)

Query: 249 NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETML 308
           N+   N +I  +   G++  A + FD +E + ++TWN++IAGY   G   EA  L   M+
Sbjct: 95  NIYELNTLIKLHSICGNMLEARQTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMV 154

Query: 309 IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIE 368
              + P+  T +  L A +  A L  G+  H+ ++K GFV D  +GT L+ MY K GS++
Sbjct: 155 DEAMEPSIITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMD 214

Query: 369 SALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACS 428
            A  VF  + K+ V  +  MI G    G   +A  LF +M + G KP  I+F+ +L+ CS
Sbjct: 215 GARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCS 274

Query: 429 HAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIW 488
               +  G+      +N  G+   +     L+ +    G +E A+   + M +R + V W
Sbjct: 275 TPEALAWGKAVHAQCMNT-GLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVR-DVVSW 332

Query: 489 MSLLSGARNHGNKD--IGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMK 546
             ++ G   + N +   G +A      + PD I  Y+ + N  A++       E+   + 
Sbjct: 333 TVMIRGYAENSNIEDAFGLFATMQEEGIQPDRI-TYIHIINACASSADLSLAREIHSQVV 391

Query: 547 KRGFRKD 553
           + GF  D
Sbjct: 392 RAGFGTD 398


>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
          Length = 575

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 251/565 (44%), Positives = 333/565 (58%), Gaps = 36/565 (6%)

Query: 160 LSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM----- 214
           L  L   YA  G +D    +F    +  +  W  +I G+  +G  E A+  + +M     
Sbjct: 12  LDKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGV 71

Query: 215 -----------------P-------------DRDLFSWTCLVDGFSKCGKVEIAREIFYR 244
                            P             D DL+  T L+D +++ G V  A+++F  
Sbjct: 72  EPNAFTFSSILKLCPIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDT 131

Query: 245 MPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELL 304
           MP ++LVS  AM+  Y K G++D+A  LFD ME RD + WN MI GY  NG   EAL L 
Sbjct: 132 MPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLF 191

Query: 305 ETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKC 364
             ML     PN+ T++S LSA   L  L  GRW+HSYI  NG   +  +GT L+ MYSKC
Sbjct: 192 RRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKC 251

Query: 365 GSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVL 424
           GS+E A  VF  I  K V  W +MIVG  M G + +AL LF  MCRMG+ PT ITFIG+L
Sbjct: 252 GSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGIL 311

Query: 425 NACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPN 484
           +AC H+G V +G   FN M ++YGIEP IEHYGC+V++L R G++E+A   +++M + P+
Sbjct: 312 SACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPD 371

Query: 485 FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREM 544
            V+W +LL   R HG   +GE     L+       G Y++LSNIYAA G WD V+ +R M
Sbjct: 372 PVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTM 431

Query: 545 MKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQV 604
           MK  G +K+PG SSIE    +HEF+ G  +HP+  EI+  L E+   LK+ G+ P T  V
Sbjct: 432 MKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIV 491

Query: 605 LLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYN 664
           L  I  + EKE  LE HSE+LAIAFGLIN +  + I+IVKNLRVC DCH VTKL+S I  
Sbjct: 492 LHDI-GETEKERSLEVHSEKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLISKITG 550

Query: 665 REIIVRDNSRFHHFKNGSCSCKDFW 689
           R+I+VRD +RFHHF NGSCSC D+W
Sbjct: 551 RKIVVRDRNRFHHFVNGSCSCGDYW 575



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 110/417 (26%), Positives = 190/417 (45%), Gaps = 77/417 (18%)

Query: 68  INNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPC 127
           +  L Y+ ++F R  Q+PS+  +  +I  +       +AL  +  +L + + P+ FT   
Sbjct: 22  LGRLDYSVALFGRT-QNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSS 80

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD 187
           ++K    L  I+ GK +H    KLGF  D +V + L+ +YA+ G++   +++FD M +K 
Sbjct: 81  ILK----LCPIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKS 136

Query: 188 LVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM-- 245
           LVS   ++  Y K GE++ A  LFD M +RD   W  ++DG+++ G    A  +F RM  
Sbjct: 137 LVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLK 196

Query: 246 ----PNR----------------------------NLVSWN-----AMINGYMKAGDVDS 268
               PN                             N + +N     A+++ Y K G ++ 
Sbjct: 197 AKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLED 256

Query: 269 ACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAG 328
           A  +FD ++ +D++ WNSMI GY + G   EAL+L ++M    + P + T +  LSA   
Sbjct: 257 ARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGILSACG- 315

Query: 329 LAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAM 388
                     HS  V  G+        +  +M  + G IE            K+ H+  M
Sbjct: 316 ----------HSGWVTEGW-------DIFNKMKDEYG-IEP-----------KIEHYGCM 346

Query: 389 IVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN 445
           +  LG  G   QA +L      M ++P  + +  +L AC   G +  G +   ++++
Sbjct: 347 VNLLGRAGHVEQAYELVKN---MNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVD 400



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/270 (31%), Positives = 136/270 (50%), Gaps = 14/270 (5%)

Query: 71  LHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIK 130
           L  AR +FD + +    V +N++I  Y  N   +EAL LF  +L     P+  T+  V+ 
Sbjct: 153 LDAARVLFDGMEERDG-VCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLS 211

Query: 131 GAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVS 190
              +LGA++ G+ +H  +   G  F+  V ++LV MY+K G ++  R VFD +DDKD+V+
Sbjct: 212 ACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVA 271

Query: 191 WNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDG-FSKCGK---VEIAREIFYRMP 246
           WN +I GY   G  + A++LF  M    L        G  S CG    V    +IF +M 
Sbjct: 272 WNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMK 331

Query: 247 NR-----NLVSWNAMINGYMKAGDVDSACELFDDMEIR-DLITWNSMIAGYELNGRFMEA 300
           +       +  +  M+N   +AG V+ A EL  +M I  D + W +++    L+G+    
Sbjct: 332 DEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALG 391

Query: 301 LELLETMLIGDVLPNDAT--LVSALSAVAG 328
            +++E +L+   L N  T  L+S + A  G
Sbjct: 392 EKIVE-LLVDQNLANSGTYILLSNIYAAVG 420


>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 649

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 246/599 (41%), Positives = 347/599 (57%), Gaps = 42/599 (7%)

Query: 133 ARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDL---GRRVFDAMDDKDLV 189
            R    +E KQIH  + K G   D + ++  +S        D     + VFD  D  D  
Sbjct: 51  TRCSKQEELKQIHARMLKTGLIQDSYAITKFLSCCISSTSSDFLPYAQIVFDGFDRPDTF 110

Query: 190 SWNCLIDGYVKKGEVEVAMKLFDEM------------P---------------------- 215
            WN +I G+    E E ++ L+  M            P                      
Sbjct: 111 LWNLMIRGFSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSALEETTQIHAQI 170

Query: 216 -----DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSAC 270
                + D+++   L++ ++  G  ++A  +F R+P  + VSWN++I GY KAG +D A 
Sbjct: 171 TKLGYENDVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMDIAL 230

Query: 271 ELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLA 330
            LF  M  ++ I+W +MI+GY   G   EAL+L   M   DV P++ +L +ALSA A L 
Sbjct: 231 TLFRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLANALSACAQLG 290

Query: 331 VLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIV 390
            L +G+W+HSY+ K    +D VLG +LI MY+KCG +  AL VF+ I +K V  WTA+I 
Sbjct: 291 ALEQGKWIHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEALEVFKNIQRKSVQAWTALIS 350

Query: 391 GLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIE 450
           G   HG   +A+  F +M +MG+KP  ITF  VL ACS+ GLV +G+  F  M  DY ++
Sbjct: 351 GYAYHGHGREAISKFMEMQKMGIKPNVITFTTVLTACSYTGLVEEGKLIFYNMERDYNLK 410

Query: 451 PTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANN 510
           PTIEHYGC+VD+L R G L+EAK  I+ MP++PN VIW +LL   R H N ++GE     
Sbjct: 411 PTIEHYGCVVDLLSRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEI 470

Query: 511 LIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVV 570
           LI + P   G YV  +NI+A   +WDK +E R +MK++G  K PG S+I   G  HEF+ 
Sbjct: 471 LIAIDPYHGGRYVHKANIHAMGKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLA 530

Query: 571 GDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFG 630
           GD+SHP+ ++I SK   MR KL+  G+VP+   +LL + D  E+E  +  HSE+LAI +G
Sbjct: 531 GDRSHPEIEKIQSKWKIMRRKLEENGYVPELEDMLLDLVDDDERETIVHQHSEKLAITYG 590

Query: 631 LINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           LI  K  + IRI+KNLRVC DCH VTKL+S IY R+I++RD +RFHHF++G CSC D+W
Sbjct: 591 LIKTKPGTTIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW 649



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 92/345 (26%), Positives = 169/345 (48%), Gaps = 41/345 (11%)

Query: 32  STHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINN-LHYARSIFDRILQHPSLVLY 90
           S  +E +Q+HA  +KT LI  S   ++ LS  +    ++ L YA+ +FD     P   L+
Sbjct: 54  SKQEELKQIHARMLKTGLIQDSYAITKFLSCCISSTSSDFLPYAQIVFDG-FDRPDTFLW 112

Query: 91  NLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFK 150
           NL+I+ +  +     +L L+  +L      + +T P ++K  + L A++E  QIH  + K
Sbjct: 113 NLMIRGFSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSALEETTQIHAQITK 172

Query: 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
           LG+  D + ++SL++ YA  G   L   +FD +   D VSWN +I GY K G++++A+ L
Sbjct: 173 LGYENDVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMDIALTL 232

Query: 211 FDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWN---------------- 254
           F +M +++  SWT ++ G+ + G  + A ++F+ M N ++   N                
Sbjct: 233 FRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLANALSACAQLGAL 292

Query: 255 -----------------------AMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGY 291
                                   +I+ Y K GD+  A E+F +++ + +  W ++I+GY
Sbjct: 293 EQGKWIHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEALEVFKNIQRKSVQAWTALISGY 352

Query: 292 ELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGR 336
             +G   EA+     M    + PN  T  + L+A +   ++ +G+
Sbjct: 353 AYHGHGREAISKFMEMQKMGIKPNVITFTTVLTACSYTGLVEEGK 397


>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
 gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 248/634 (39%), Positives = 361/634 (56%), Gaps = 51/634 (8%)

Query: 105 EALTLFC---------DLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF 155
           EA+ + C          LL R   P       ++K   +  A+KEGKQ+H  + K     
Sbjct: 93  EAIDILCGQSRLREAVQLLYRIEKPYASIYLTLLKFCLKQRALKEGKQVHAHI-KTSGSI 151

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP 215
             ++ + L+ MYAK G +    +VFD M  +DL SWN +I GYVK G  E A  LFD+MP
Sbjct: 152 GLYISNRLLDMYAKCGSLVDAEKVFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFDKMP 211

Query: 216 DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNL------------------------- 250
           +RD FSWT ++ G  +  + E A E++  M   +                          
Sbjct: 212 NRDNFSWTAIISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSALAASAAIPSLHMGK 271

Query: 251 ---------------VSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNG 295
                          V W ++++ Y K G ++ A  +FD ME RD+++W +MI  Y  NG
Sbjct: 272 KIHGHIMRMGLDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNG 331

Query: 296 RFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGT 355
           R  E   L   ++  +++PND T    L+A A LA  + G+ +H+Y+V+ GF       +
Sbjct: 332 RREEGFALFRHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMVRVGFDSFSSAAS 391

Query: 356 LLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKP 415
            L+ MYSKCG IE+A +VF  + +  +  WT+++VG   HG   +AL  F  + + G KP
Sbjct: 392 ALVHMYSKCGDIENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTKP 451

Query: 416 TAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKST 475
             I FIGVL+AC+HAGLV+ G  YF+ +   +G+  TI+HY C++D+L R G   EA+S 
Sbjct: 452 DGIAFIGVLSACAHAGLVDKGLEYFHSIKEKHGLTRTIDHYACIIDLLARAGQFTEAESI 511

Query: 476 IESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQW 535
           I  MP++P+  IW +LL G R HGN ++ + AA +L ++ P+    YV L+NIYA+AG  
Sbjct: 512 INEMPIKPDKYIWAALLGGCRIHGNLELAKRAAKSLFEIEPENPATYVTLANIYASAGMR 571

Query: 536 DKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAA 595
            + + +RE M  RG  K PG S IE R  +H F VGD SHP++ EI   LSE+  ++K  
Sbjct: 572 AEEANIRETMDSRGIVKKPGMSWIEIRREVHVFSVGDNSHPKSKEILEYLSELSKRMKEV 631

Query: 596 GHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSV 655
           G+VPDT  VL  +E  ++KE  L  HSE+LA+AFG+I+  S +PI++ KNLR C DCH+ 
Sbjct: 632 GYVPDTNFVLHDVE-LEQKEENLSYHSEKLAVAFGIISTPSGTPIKVFKNLRTCVDCHNA 690

Query: 656 TKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            K +S I  R+IIVRD++RFH F+ GSCSCKD+W
Sbjct: 691 IKFISNITGRKIIVRDSNRFHCFEGGSCSCKDYW 724



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 113/461 (24%), Positives = 211/461 (45%), Gaps = 58/461 (12%)

Query: 21  SRLHWNILKFSSTH---KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSI 77
           + ++  +LKF       KE +Q+HA  +KT+      IS+RLL +Y      +L  A  +
Sbjct: 119 ASIYLTLLKFCLKQRALKEGKQVHA-HIKTSGSIGLYISNRLLDMYAK--CGSLVDAEKV 175

Query: 78  FDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAAR--- 134
           FD ++ H  L  +N++I  YV      +A  LF  + +R    DNF+   +I G  +   
Sbjct: 176 FDEMV-HRDLCSWNIMISGYVKGGNFEKARNLFDKMPNR----DNFSWTAIISGCVQHNR 230

Query: 135 ---------------------------------LGAIKEGKQIHGLVFKLGFGFDKFVLS 161
                                            + ++  GK+IHG + ++G   D+ V  
Sbjct: 231 PEEALELYRLMQKHDYSKSNKCTISSALAASAAIPSLHMGKKIHGHIMRMGLDSDEVVWC 290

Query: 162 SLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL-- 219
           SL+ MY K G I+  R +FD M+++D+VSW  +I  Y+K G  E    LF  + + ++  
Sbjct: 291 SLLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALFRHLMNSNIMP 350

Query: 220 --FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSW----NAMINGYMKAGDVDSACELF 273
             F++  +++  +     ++ ++I   M      S+    +A+++ Y K GD+++A  +F
Sbjct: 351 NDFTFAGVLNACADLAAEDLGKQIHAYMVRVGFDSFSSAASALVHMYSKCGDIENAKSVF 410

Query: 274 DDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLN 333
           + +   DL +W S++ GY  +G+  +AL   E +L     P+    +  LSA A   +++
Sbjct: 411 EILPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTKPDGIAFIGVLSACAHAGLVD 470

Query: 334 KG-RWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGH-WTAMIVG 391
           KG  + HS   K+G          +I + ++ G    A ++   +  K   + W A++ G
Sbjct: 471 KGLEYFHSIKEKHGLTRTIDHYACIIDLLARAGQFTEAESIINEMPIKPDKYIWAALLGG 530

Query: 392 LGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGL 432
             +HG    A      +  +  +  A T++ + N  + AG+
Sbjct: 531 CRIHGNLELAKRAAKSLFEIEPENPA-TYVTLANIYASAGM 570


>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
 gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
          Length = 627

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 248/630 (39%), Positives = 365/630 (57%), Gaps = 47/630 (7%)

Query: 104 HEALTLFCDLLDRFLLPDNFTLPCVIKGAARL----GAIKEGKQIHGLVFKLGFGFDKFV 159
            +A+  +  +L R   PD +T P ++K  AR     G+    + +H  V +LG G +  V
Sbjct: 1   EDAVAGYARMLARGGRPDAYTFPALLKAVARAAGGSGSAAPARAVHAHVVRLGMGRNAHV 60

Query: 160 LSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR-- 217
            SSLV+ Y   G+    R +    D    V+WN LI G+ + G    +   F +M     
Sbjct: 61  ASSLVAAYTAGGDGAAARALVGECDTP--VAWNALISGHNRGGRFGESCGSFVDMARAGA 118

Query: 218 --------------------------------------DLFSWTCLVDGFSKCGKVEIAR 239
                                                 DL     LVD +++C  +  A 
Sbjct: 119 APTPVTYVSVLSACGKGTRDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMGSAW 178

Query: 240 EIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFME 299
           ++F  M  R++VSW ++++G  + G VD A +LFD M  RD ++W +MI GY    RF E
Sbjct: 179 KVFDGMQVRSVVSWTSLLSGLARLGQVDEARDLFDRMPERDTVSWTAMIDGYVWAARFRE 238

Query: 300 ALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQ 359
           ALE+   M   +V  ++ T+VS ++A A L  L  G W+  Y+ + G  +D  +G  LI 
Sbjct: 239 ALEMFREMQYSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALID 298

Query: 360 MYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAIT 419
           MYSKCGSIE AL VF+ +  +    WTA+I+GL ++G   +A+++F++M R+   P  +T
Sbjct: 299 MYSKCGSIERALDVFKGMHHRDKFTWTAIILGLAVNGYEEEAIEMFHRMIRVSETPDEVT 358

Query: 420 FIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM 479
           FIGVL AC+HAGLV+ GR +F  MI  Y I P + HYGC++D+L R G + EA  TI+ M
Sbjct: 359 FIGVLTACTHAGLVDKGREFFLSMIEAYNIAPNVVHYGCIIDLLGRAGKITEALDTIDQM 418

Query: 480 PMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVS 539
           PM PN  IW +LL+  R HGN +IGE  A  L+++ P+    Y++LSNIYA   +W+ V 
Sbjct: 419 PMTPNSTIWGTLLAACRVHGNSEIGELVAERLLELDPENSMVYILLSNIYAKCNRWEDVR 478

Query: 540 EVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVP 599
            +R  + ++G +K+PG S IE  G++HEFV GD+SHP + EI+SKL  + + L   G+ P
Sbjct: 479 RLRHAIMEKGIKKEPGCSLIEMDGIIHEFVAGDQSHPMSKEIYSKLESIISDLNNVGYFP 538

Query: 600 DTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLL 659
           D T+V + +  +KEK+  L  HSE+LAIAF L++ K  + IRIVKNLR+C DCH+  KL+
Sbjct: 539 DVTEVFVEVA-EKEKKKVLYWHSEKLAIAFALLSSKPNTVIRIVKNLRMCLDCHNAIKLI 597

Query: 660 SGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           S +Y RE++VRD +RFHHF++G CSCKD+W
Sbjct: 598 SRLYGREVVVRDRTRFHHFRHGFCSCKDYW 627



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 101/381 (26%), Positives = 159/381 (41%), Gaps = 75/381 (19%)

Query: 88  VLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAAR-LGAIKEGKQIHG 146
           V +N LI  +    R  E+   F D+      P   T   V+    +    +  G Q+HG
Sbjct: 88  VAWNALISGHNRGGRFGESCGSFVDMARAGAAPTPVTYVSVLSACGKGTRDVLLGMQVHG 147

Query: 147 LVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEV 206
            V   G   D  V ++LV MYA+  ++    +VFD M  + +VSW  L+ G  + G+V+ 
Sbjct: 148 RVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQVDE 207

Query: 207 AMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS-------------- 252
           A  LFD MP+RD  SWT ++DG+    +   A E+F  M   N+ +              
Sbjct: 208 ARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITACAQ 267

Query: 253 --------W-----------------NAMINGYMKAGDVDSACELFDDMEIRDLITWNSM 287
                   W                 NA+I+ Y K G ++ A ++F  M  RD  TW ++
Sbjct: 268 LGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAI 327

Query: 288 IAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGF 347
           I G  +NG   EA+E+   M+     P++ T +  L+A     +++KGR           
Sbjct: 328 ILGLAVNGYEEEAIEMFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGR----------- 376

Query: 348 VVDGVLGTLLIQMYSKCGSIESALTVFRAIS-KKKVGHWTAMIVGLGMHGMATQALDLFN 406
                               E  L++  A +    V H+  +I  LG  G  T+ALD  +
Sbjct: 377 --------------------EFFLSMIEAYNIAPNVVHYGCIIDLLGRAGKITEALDTID 416

Query: 407 KMCRMGMKPTAITFIGVLNAC 427
           +   M M P +  +  +L AC
Sbjct: 417 Q---MPMTPNSTIWGTLLAAC 434


>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 624

 Score =  470 bits (1210), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 248/593 (41%), Positives = 353/593 (59%), Gaps = 45/593 (7%)

Query: 142 KQIHGLVFKLGFGFDKFVLSSL--VSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGY- 198
           KQ H  +   G        + L  V + + FG +    ++FD +   D+  +N +I  + 
Sbjct: 32  KQTHAHLITTGLILHPITANKLLKVLIASSFGSLSYAHQLFDQIPKPDVFIYNTMIKAHA 91

Query: 199 VKKGEVEVAMKLFDEM-------PDR---------------------------------D 218
           V       +M++F  M       P+R                                 +
Sbjct: 92  VIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAIKIGLESN 151

Query: 219 LFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEI 278
           LF    ++  ++  G V+ AR +F    +++L SWN MI GY+ +G++  A E+FD+M  
Sbjct: 152 LFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSE 211

Query: 279 RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWM 338
           RD+++W ++IAGY   G F EAL+L   ML     PN+ TL SAL+A A L  L++GRW+
Sbjct: 212 RDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWI 271

Query: 339 HSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS--KKKVGHWTAMIVGLGMHG 396
           H YI K+   ++  L   L+ MY+KCG I+ A  VF      K KV  W AMI G  MHG
Sbjct: 272 HVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHG 331

Query: 397 MATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHY 456
            + +A+DLF +M    + P  +TF+ +LNACSH  LV +GR YF  M + YGIEP IEHY
Sbjct: 332 KSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHY 391

Query: 457 GCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAP 516
           GC+VD+L R+G L+EA+ T+ +MPM P+  IW +LL   R H + + G+     + ++  
Sbjct: 392 GCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGKIIKELDS 451

Query: 517 DTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHP 576
           D IGC+V+L+N+Y+A+GQWD+   VR+ ++  G +K PG SSIE  GV H+F+VGD+SHP
Sbjct: 452 DHIGCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSIELNGVFHQFLVGDRSHP 511

Query: 577 QTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKS 636
           QT +++  L EM  KLK AG+VP+  +VLL I+D+++KE  L  HSE+LAIAFGLIN   
Sbjct: 512 QTKQLYLFLDEMTTKLKNAGYVPEFGEVLLDIDDEEDKETALSKHSEKLAIAFGLINTPP 571

Query: 637 RSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            + IRIVKNLRVC DCH  TK +S +Y REIIVRD  R+HHFK+G CSCKD+W
Sbjct: 572 GTAIRIVKNLRVCADCHEATKFISKVYKREIIVRDRIRYHHFKDGFCSCKDYW 624



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 137/496 (27%), Positives = 237/496 (47%), Gaps = 89/496 (17%)

Query: 28  LKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSL 87
           L+   +  + +Q HA  + T LI H   +++LL + +     +L YA  +FD+I + P +
Sbjct: 22  LESCKSMNQIKQTHAHLITTGLILHPITANKLLKVLIASSFGSLSYAHQLFDQIPK-PDV 80

Query: 88  VLYNLLIKCY-VFNQRSHEALTLFCDLLD-RFLLPDNFTLPCVIKGAARLGAIKEGKQIH 145
            +YN +IK + V    SH ++ +F  ++     LP+ +T   V K       + EG+QI 
Sbjct: 81  FIYNTMIKAHAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIR 140

Query: 146 GLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVE 205
               K+G   + FV ++++ MYA +G +D  RRVFD   D+DL SWN +I GYV  GE+ 
Sbjct: 141 VHAIKIGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIG 200

Query: 206 VAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM------PNR----------- 248
            A ++FDEM +RD+ SWT ++ G+ + G  + A ++F+ M      PN            
Sbjct: 201 RAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACA 260

Query: 249 NLVSWN----------------------AMINGYMKAGDVDSACELFDD---MEIRDLIT 283
           NLV+ +                      ++++ Y K G++D A ++F D   ++++ +  
Sbjct: 261 NLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLK-VWP 319

Query: 284 WNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIV 343
           WN+MI GY ++G+  EA++L E M +  V PN  T V+ L+A +   ++ +GR       
Sbjct: 320 WNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGR------- 372

Query: 344 KNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALD 403
                                G  +S  + +    + ++ H+  M+  LG  G+  +A +
Sbjct: 373 ---------------------GYFKSMASSYGI--EPEIEHYGCMVDLLGRSGLLKEAEE 409

Query: 404 -LFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGC---L 459
            +FN    M M P A  +  +L AC     +  G+R     I     E   +H GC   L
Sbjct: 410 TVFN----MPMAPDATIWGALLGACRIHKDIERGQR-----IGKIIKELDSDHIGCHVLL 460

Query: 460 VDILCRTGYLEEAKST 475
            ++   +G  +EAK+ 
Sbjct: 461 ANLYSASGQWDEAKAV 476


>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
 gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 243/582 (41%), Positives = 351/582 (60%), Gaps = 36/582 (6%)

Query: 143 QIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKG 202
           QIH  + + G   +  +   L   YA  G +D    VF+  D+ ++ S++ +I  +V+  
Sbjct: 65  QIHASLLRRGLYHNPILNFKLQRSYAALGRLDCSVFVFNTFDEPNVFSFSAIIHSHVQSR 124

Query: 203 EVEVAMKLFDEM------PD-----------------------------RDLFSWTCLVD 227
             + A   + +M      P+                              DL+  T LVD
Sbjct: 125 LFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCSLESGKVLHCQAIKLGLGSDLYVRTGLVD 184

Query: 228 GFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSM 287
            +++ G V  AR++F +MP R+LVS   M+  Y K G++D A  LF+ M+ RD++ WN M
Sbjct: 185 VYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDKARSLFEGMKERDVVCWNVM 244

Query: 288 IAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGF 347
           I GY  +G   E+L+L   ML+   +PN+ T+++ LSA   L  L  GRW+HSYI   G 
Sbjct: 245 IGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESGRWIHSYIENKGI 304

Query: 348 VVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNK 407
            ++  +GT LI MYSKCGS+E A  VF  I  K V  W +MIVG  MHG +  AL LF +
Sbjct: 305 QINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYAMHGFSQHALQLFEE 364

Query: 408 MCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTG 467
           M   G KPT ITFIG+L+AC H GLV +GR +F +M + YGIEP IEHYGC+V++L R G
Sbjct: 365 MTETGHKPTDITFIGILSACGHGGLVEEGRSFFRLMRDKYGIEPKIEHYGCMVNLLGRAG 424

Query: 468 YLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSN 527
           +LEEA   +++M +  + V+W +LL   R H N  +GE  A  L+       G YV+LSN
Sbjct: 425 HLEEAYGLVKNMTIAADPVLWGTLLGCCRLHVNIKLGEEIAKFLVDQKLANSGTYVLLSN 484

Query: 528 IYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSE 587
           +YAA G W+ V+++R +MK+ G  K+ G SSIE    +HEFV G++ HP++ EI+  L+E
Sbjct: 485 MYAATGNWEGVAKMRTLMKEHGIEKEHGCSSIEVDNKVHEFVAGERKHPKSKEIYVMLNE 544

Query: 588 MRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLR 647
           + + LKA G+ P T  VL  + ++ +KE  LE HSE+LAIAFGLI+ K  + ++IVKNLR
Sbjct: 545 INSWLKARGYTPQTDVVLHDLREE-QKEQSLEVHSEKLAIAFGLISTKPGTTVKIVKNLR 603

Query: 648 VCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           VC+DCH+V K++S I  R+I++RD +RFHHF++G CSC D+W
Sbjct: 604 VCSDCHTVMKMISEITGRKIVMRDRNRFHHFEDGLCSCGDYW 645



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 105/398 (26%), Positives = 177/398 (44%), Gaps = 66/398 (16%)

Query: 1   MQTQTLQHSSPIHALQQHLPSRLHWN----------ILKFSSTHKETQQLHALSVKTNLI 50
           M TQT+  SS   A     PS    N            + S   +E ++  +L  K+  +
Sbjct: 1   MNTQTMSSSSIFTASHPSPPSIFTTNRSSVLPSSSSTARTSDRFQEVERFASLIDKSKSV 60

Query: 51  YHS-GISSRLL--SLYVDPHIN-NLHYARSIFDRI---------LQHPSLVLYNLLIKCY 97
            H   I + LL   LY +P +N  L  + +   R+            P++  ++ +I  +
Sbjct: 61  AHLLQIHASLLRRGLYHNPILNFKLQRSYAALGRLDCSVFVFNTFDEPNVFSFSAIIHSH 120

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
           V ++    A   +  +L   + P+ FT   V+K  +    ++ GK +H    KLG G D 
Sbjct: 121 VQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCS----LESGKVLHCQAIKLGLGSDL 176

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
           +V + LV +YA+ G++   R++FD M ++ LVS   ++  Y K GE++ A  LF+ M +R
Sbjct: 177 YVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDKARSLFEGMKER 236

Query: 218 DLFSWTCLVDGFSKCGKVEIAREIFYRM------PNRNLV----------------SW-- 253
           D+  W  ++ G+++ G    + ++F RM      PN   V                 W  
Sbjct: 237 DVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESGRWIH 296

Query: 254 ---------------NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFM 298
                           A+I+ Y K G ++ A  +FD +  +D++ WNSMI GY ++G   
Sbjct: 297 SYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYAMHGFSQ 356

Query: 299 EALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGR 336
            AL+L E M      P D T +  LSA     ++ +GR
Sbjct: 357 HALQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGR 394



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 135/273 (49%), Gaps = 14/273 (5%)

Query: 68  INNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPC 127
           +  L  ARS+F+  ++   +V +N++I  Y  +   +E+L LF  +L    +P+  T+  
Sbjct: 220 MGELDKARSLFEG-MKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLA 278

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD 187
           V+    +LGA++ G+ IH  +   G   +  V ++L+ MY+K G ++  R VFD + DKD
Sbjct: 279 VLSACGQLGALESGRWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKD 338

Query: 188 LVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDG-FSKCGK---VEIAREIFY 243
           +V+WN +I GY   G  + A++LF+EM +           G  S CG    VE  R  F 
Sbjct: 339 VVAWNSMIVGYAMHGFSQHALQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRSFFR 398

Query: 244 RMPNR-----NLVSWNAMINGYMKAGDVDSACELFDDMEI-RDLITWNSMIAGYELNGRF 297
            M ++      +  +  M+N   +AG ++ A  L  +M I  D + W +++    L+   
Sbjct: 399 LMRDKYGIEPKIEHYGCMVNLLGRAGHLEEAYGLVKNMTIAADPVLWGTLLGCCRLHVNI 458

Query: 298 MEALELLETMLIGDVLPNDAT--LVSALSAVAG 328
               E+ +  L+   L N  T  L+S + A  G
Sbjct: 459 KLGEEIAK-FLVDQKLANSGTYVLLSNMYAATG 490


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 246/645 (38%), Positives = 384/645 (59%), Gaps = 17/645 (2%)

Query: 55  ISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL 114
           + + +LS+Y      ++  A  +FD +++  ++V +  +I  +  + R  EA   F  ++
Sbjct: 349 VGTAILSMYTK--CGSMEDALEVFD-LVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMI 405

Query: 115 DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEID 174
           +  + P+  T   ++   +   A+K G+QI   + + G+G D  V ++L+SMYAK G + 
Sbjct: 406 ESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLK 465

Query: 175 LGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDG 228
              RVF+ +  +++V+WN +I  YV+  + + A+  F  +      P+   F  T +++ 
Sbjct: 466 DAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTF--TSILNV 523

Query: 229 FSKCGKVEIAREIFYRMPNRNLVS----WNAMINGYMKAGDVDSACELFDDMEIRDLITW 284
                 +E+ + + + +    L S     NA+++ ++  GD+ SA  LF+DM  RDL++W
Sbjct: 524 CKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSW 583

Query: 285 NSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVK 344
           N++IAG+  +G+   A +  + M    + P+  T    L+A A    L +GR +H+ I +
Sbjct: 584 NTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITE 643

Query: 345 NGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDL 404
             F  D ++GT LI MY+KCGSIE A  VF  + KK V  WT+MI G   HG   +AL+L
Sbjct: 644 AAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKEALEL 703

Query: 405 FNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILC 464
           F +M + G+KP  ITF+G L+AC+HAGL+ +G  +F  M  ++ IEP +EHYGC+VD+  
Sbjct: 704 FYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSM-KEFNIEPRMEHYGCMVDLFG 762

Query: 465 RTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVV 524
           R G L EA   I  M + P+  +W +LL   + H N ++ E AA   +++ P+  G +V+
Sbjct: 763 RAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNGVFVI 822

Query: 525 LSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSK 584
           LSNIYAAAG W +V+++R++M  RG  K PG S IE  G +H F   DK+HPQT+EIH++
Sbjct: 823 LSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDDKTHPQTEEIHAE 882

Query: 585 LSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVK 644
           L  +  +++  G+VPDT  VL  +ED  EKE  L  HSERLAI +GL+     +PI I K
Sbjct: 883 LERLHMEMRQLGYVPDTRYVLHDVEDN-EKEQALFYHSERLAITYGLLKTPPLTPIVISK 941

Query: 645 NLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           NLRVC DCH+ TK +S I  R+II RD++RFHHFK+G CSC DFW
Sbjct: 942 NLRVCGDCHTATKFISKITKRQIIARDSNRFHHFKDGVCSCGDFW 986



 Score =  214 bits (546), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 128/442 (28%), Positives = 225/442 (50%), Gaps = 17/442 (3%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           A+ IFD  ++   +  +NLL+  YV +    EA  L   ++   + PD  T   ++   A
Sbjct: 164 AKQIFDD-MREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACA 222

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
               + +G++++ L+ K G+  D FV ++L++M+ K G+I    +VFD +  +DLV+W  
Sbjct: 223 DARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTS 282

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRN 249
           +I G  + G  + A  LF  M +     D  ++  L+   +    +E  +++  RM    
Sbjct: 283 MITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKE-- 340

Query: 250 LVSWN-------AMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALE 302
            V W+       A+++ Y K G ++ A E+FD ++ R++++W +MIAG+  +GR  EA  
Sbjct: 341 -VGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFL 399

Query: 303 LLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYS 362
               M+   + PN  T +S L A +  + L +G+ +  +I++ G+  D  + T L+ MY+
Sbjct: 400 FFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYA 459

Query: 363 KCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIG 422
           KCGS++ A  VF  ISK+ V  W AMI     H     AL  F  + + G+KP + TF  
Sbjct: 460 KCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTS 519

Query: 423 VLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMR 482
           +LN C  +  +  G ++ + +I   G+E  +     LV +    G L  AK+    MP R
Sbjct: 520 ILNVCKSSDSLELG-KWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKR 578

Query: 483 PNFVIWMSLLSGARNHGNKDIG 504
            + V W ++++G   HG   + 
Sbjct: 579 -DLVSWNTIIAGFVQHGKNQVA 599



 Score =  208 bits (529), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 121/390 (31%), Positives = 208/390 (53%), Gaps = 16/390 (4%)

Query: 124 TLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAM 183
           T   +++   +   + +G++I+  + K G   D F+ ++L++MYAK G     +++FD M
Sbjct: 112 TYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDM 171

Query: 184 DDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKCGKVEI 237
            +KD+ SWN L+ GYV+ G  E A KL ++M      PD+  F    +++  +    V+ 
Sbjct: 172 REKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTF--VSMLNACADARNVDK 229

Query: 238 AREIFYRMP----NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYEL 293
            RE++  +     + +L    A+IN ++K GD+  A ++FD++  RDL+TW SMI G   
Sbjct: 230 GRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLAR 289

Query: 294 NGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVL 353
           +GRF +A  L + M    V P+    VS L A      L +G+ +H+ + + G+  +  +
Sbjct: 290 HGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYV 349

Query: 354 GTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGM 413
           GT ++ MY+KCGS+E AL VF  +  + V  WTAMI G   HG   +A   FNKM   G+
Sbjct: 350 GTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGI 409

Query: 414 KPTAITFIGVLNACSHAGLVNDGRRYFNMMIN-DYGIEPTIEHYGCLVDILCRTGYLEEA 472
           +P  +TF+ +L ACS    +  G++  + +I   YG +  +     L+ +  + G L++A
Sbjct: 410 EPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVR--TALLSMYAKCGSLKDA 467

Query: 473 KSTIESMPMRPNFVIWMSLLSGARNHGNKD 502
               E +  + N V W ++++    H   D
Sbjct: 468 HRVFEKIS-KQNVVAWNAMITAYVQHEQYD 496



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 117/230 (50%), Gaps = 4/230 (1%)

Query: 270 CELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGL 329
           C +F D  I+D    N+++      G+F EA+++LE +    +     T  + L      
Sbjct: 66  CVVFAD--IKDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKF 123

Query: 330 AVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMI 389
             L  G  ++++I K+G   D  +   LI MY+KCG+  SA  +F  + +K V  W  ++
Sbjct: 124 KNLGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLL 183

Query: 390 VGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGI 449
            G   HG+  +A  L  +M +  +KP   TF+ +LNAC+ A  V+ GR  +N+++   G 
Sbjct: 184 GGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILK-AGW 242

Query: 450 EPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
           +  +     L+++  + G + +A    +++P R + V W S+++G   HG
Sbjct: 243 DTDLFVGTALINMHIKCGDIGDATKVFDNLPTR-DLVTWTSMITGLARHG 291


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 246/645 (38%), Positives = 384/645 (59%), Gaps = 17/645 (2%)

Query: 55  ISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL 114
           + + +LS+Y      ++  A  +FD +++  ++V +  +I  +  + R  EA   F  ++
Sbjct: 349 VGTAILSMYTK--CGSMEDALEVFD-LVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMI 405

Query: 115 DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEID 174
           +  + P+  T   ++   +   A+K G+QI   + + G+G D  V ++L+SMYAK G + 
Sbjct: 406 ESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLK 465

Query: 175 LGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDG 228
              RVF+ +  +++V+WN +I  YV+  + + A+  F  +      P+   F  T +++ 
Sbjct: 466 DAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTF--TSILNV 523

Query: 229 FSKCGKVEIAREIFYRMPNRNLVS----WNAMINGYMKAGDVDSACELFDDMEIRDLITW 284
                 +E+ + + + +    L S     NA+++ ++  GD+ SA  LF+DM  RDL++W
Sbjct: 524 CKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSW 583

Query: 285 NSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVK 344
           N++IAG+  +G+   A +  + M    + P+  T    L+A A    L +GR +H+ I +
Sbjct: 584 NTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITE 643

Query: 345 NGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDL 404
             F  D ++GT LI MY+KCGSIE A  VF  + KK V  WT+MI G   HG   +AL+L
Sbjct: 644 AAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGKEALEL 703

Query: 405 FNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILC 464
           F +M + G+KP  ITF+G L+AC+HAGL+ +G  +F  M  ++ IEP +EHYGC+VD+  
Sbjct: 704 FYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSM-KEFNIEPRMEHYGCMVDLFG 762

Query: 465 RTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVV 524
           R G L EA   I  M + P+  +W +LL   + H N ++ E AA   +++ P+  G +V+
Sbjct: 763 RAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNGVFVI 822

Query: 525 LSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSK 584
           LSNIYAAAG W +V+++R++M  RG  K PG S IE  G +H F   DK+HPQT+EIH++
Sbjct: 823 LSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDDKTHPQTEEIHAE 882

Query: 585 LSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVK 644
           L  +  +++  G+VPDT  VL  +ED  EKE  L  HSERLAI +GL+     +PI I K
Sbjct: 883 LERLHMEMRQLGYVPDTRYVLHDVEDN-EKEQALFYHSERLAITYGLLKTPPLTPIVISK 941

Query: 645 NLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           NLRVC DCH+ TK +S I  R+II RD++RFHHFK+G CSC DFW
Sbjct: 942 NLRVCGDCHTATKFISKITKRQIIARDSNRFHHFKDGVCSCGDFW 986



 Score =  214 bits (546), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 128/442 (28%), Positives = 225/442 (50%), Gaps = 17/442 (3%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           A+ IFD  ++   +  +NLL+  YV +    EA  L   ++   + PD  T   ++   A
Sbjct: 164 AKQIFDD-MREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACA 222

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
               + +G++++ L+ K G+  D FV ++L++M+ K G+I    +VFD +  +DLV+W  
Sbjct: 223 DARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTS 282

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRN 249
           +I G  + G  + A  LF  M +     D  ++  L+   +    +E  +++  RM    
Sbjct: 283 MITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKE-- 340

Query: 250 LVSWN-------AMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALE 302
            V W+       A+++ Y K G ++ A E+FD ++ R++++W +MIAG+  +GR  EA  
Sbjct: 341 -VGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFL 399

Query: 303 LLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYS 362
               M+   + PN  T +S L A +  + L +G+ +  +I++ G+  D  + T L+ MY+
Sbjct: 400 FFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYA 459

Query: 363 KCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIG 422
           KCGS++ A  VF  ISK+ V  W AMI     H     AL  F  + + G+KP + TF  
Sbjct: 460 KCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTS 519

Query: 423 VLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMR 482
           +LN C  +  +  G ++ + +I   G+E  +     LV +    G L  AK+    MP R
Sbjct: 520 ILNVCKSSDSLELG-KWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKR 578

Query: 483 PNFVIWMSLLSGARNHGNKDIG 504
            + V W ++++G   HG   + 
Sbjct: 579 -DLVSWNTIIAGFVQHGKNQVA 599



 Score =  208 bits (529), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 121/390 (31%), Positives = 208/390 (53%), Gaps = 16/390 (4%)

Query: 124 TLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAM 183
           T   +++   +   + +G++I+  + K G   D F+ ++L++MYAK G     +++FD M
Sbjct: 112 TYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDM 171

Query: 184 DDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKCGKVEI 237
            +KD+ SWN L+ GYV+ G  E A KL ++M      PD+  F    +++  +    V+ 
Sbjct: 172 REKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTF--VSMLNACADARNVDK 229

Query: 238 AREIFYRMP----NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYEL 293
            RE++  +     + +L    A+IN ++K GD+  A ++FD++  RDL+TW SMI G   
Sbjct: 230 GRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLAR 289

Query: 294 NGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVL 353
           +GRF +A  L + M    V P+    VS L A      L +G+ +H+ + + G+  +  +
Sbjct: 290 HGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYV 349

Query: 354 GTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGM 413
           GT ++ MY+KCGS+E AL VF  +  + V  WTAMI G   HG   +A   FNKM   G+
Sbjct: 350 GTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGI 409

Query: 414 KPTAITFIGVLNACSHAGLVNDGRRYFNMMIN-DYGIEPTIEHYGCLVDILCRTGYLEEA 472
           +P  +TF+ +L ACS    +  G++  + +I   YG +  +     L+ +  + G L++A
Sbjct: 410 EPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVR--TALLSMYAKCGSLKDA 467

Query: 473 KSTIESMPMRPNFVIWMSLLSGARNHGNKD 502
               E +  + N V W ++++    H   D
Sbjct: 468 HRVFEKIS-KQNVVAWNAMITAYVQHEQYD 496



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 111/365 (30%), Positives = 181/365 (49%), Gaps = 13/365 (3%)

Query: 171 GEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD------RDLFSWTC 224
           G    GR V  A D KD    N +++   K G+   AM++ + +        R  +S   
Sbjct: 59  GRCPKGRCVVFA-DIKDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALL 117

Query: 225 -LVDGFSKCGKVE-IAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLI 282
            L   F   G  E I   I       ++  WN +IN Y K G+  SA ++FDDM  +D+ 
Sbjct: 118 QLCIKFKNLGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVY 177

Query: 283 TWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYI 342
           +WN ++ GY  +G + EA +L E M+   V P+  T VS L+A A    ++KGR +++ I
Sbjct: 178 SWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLI 237

Query: 343 VKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQAL 402
           +K G+  D  +GT LI M+ KCG I  A  VF  +  + +  WT+MI GL  HG   QA 
Sbjct: 238 LKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQAC 297

Query: 403 DLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDI 462
           +LF +M   G++P  + F+ +L AC+H   +  G++    M  + G +  I     ++ +
Sbjct: 298 NLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARM-KEVGWDTEIYVGTAILSM 356

Query: 463 LCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIK--VAPDTIG 520
             + G +E+A    + +  R N V W ++++G   HG  D      N +I+  + P+ + 
Sbjct: 357 YTKCGSMEDALEVFDLVKGR-NVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVT 415

Query: 521 CYVVL 525
              +L
Sbjct: 416 FMSIL 420


>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 640

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 257/614 (41%), Positives = 366/614 (59%), Gaps = 62/614 (10%)

Query: 137 AIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFG----EIDLGRRVFDAMDDKDLVSWN 192
            I++  QIH +  K G   D    + ++   A       ++D   ++F+ M  ++  SWN
Sbjct: 28  TIRDLSQIHAVFIKSGQIRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSWN 87

Query: 193 CLIDGYVKKGEVE--VAMKLF-----DEMPDRDLFSWTCLVDGFSKCGKVEIAREI---- 241
            +I G+ +  E +  +A+ LF     DE  + + F++  ++   +K GK++  ++I    
Sbjct: 88  TIIRGFSESDEDKALIAITLFCEMMSDEFIEPNRFTFPSVLKACAKTGKIQQGKQIHGLA 147

Query: 242 -------------------------------FY--------------RMPNRNLVSWNAM 256
                                          FY              R  +  +V WN M
Sbjct: 148 LKYGFGGDEFVMSNLVRMYVICGLMKDACVLFYKNIIEREMVMMIDRRKRDGEVVLWNVM 207

Query: 257 INGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIG-DVLPN 315
           I+GYM+ GD  +A  LFD M  R +++WN+MI+GY  NG F +A+E+   M  G D+ PN
Sbjct: 208 IDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGFFKDAVEVFREMKKGEDIRPN 267

Query: 316 DATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFR 375
             TLVS L AV+ L  L  G W+H Y   +G  +D VLG+ LI MYSKCG IE A+ VF 
Sbjct: 268 YVTLVSVLPAVSRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIMVFE 327

Query: 376 AISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVND 435
            + ++ V  W+AMI G  +HG A  A+D F KM + G++P+ + +I +L ACSHAGLV +
Sbjct: 328 RLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHAGLVEE 387

Query: 436 GRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGA 495
           GRRYF+ M++  G+EP IEHYGC+VD+L R G L+EA+  I +MP++P+ VIW +LL   
Sbjct: 388 GRRYFSQMVSVDGLEPRIEHYGCMVDLLGRLGLLDEAEEFILNMPIKPDDVIWKALLGAC 447

Query: 496 RNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPG 555
           R H N ++G+  AN L+ + P   G YV LSN+YA+ G W +VSE+R  MK+   RKDPG
Sbjct: 448 RMHRNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEMDIRKDPG 507

Query: 556 SSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKE 615
            S I+  GVLHEF+V D SHP+  EI+S L E+ +KL+ AG+ P TTQVLL +E++ +KE
Sbjct: 508 CSWIDIDGVLHEFLVEDDSHPRAKEINSMLVEISDKLRLAGYRPITTQVLLNLEEE-DKE 566

Query: 616 AELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRF 675
             L  HSE++A AFGLI+     PIRIVKNLR+C DCHS  KL+S +Y R+I VRD  RF
Sbjct: 567 NALHYHSEKMATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKITVRDRKRF 626

Query: 676 HHFKNGSCSCKDFW 689
           HHF++GSCSC D+W
Sbjct: 627 HHFQDGSCSCMDYW 640



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 129/472 (27%), Positives = 228/472 (48%), Gaps = 93/472 (19%)

Query: 33  THKETQQLHALSVKTNLIYHSGISSRLLSLYV--DPHINNLHYARSIFDRILQHPSLVLY 90
           T ++  Q+HA+ +K+  I  +  ++ +L      D H  +L YA  IF+++ Q  +   +
Sbjct: 28  TIRDLSQIHAVFIKSGQIRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQR-NCFSW 86

Query: 91  NLLIKCYVFNQRSHE--ALTLFCDLL-DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGL 147
           N +I+ +  +       A+TLFC+++ D F+ P+ FT P V+K  A+ G I++GKQIHGL
Sbjct: 87  NTIIRGFSESDEDKALIAITLFCEMMSDEFIEPNRFTFPSVLKACAKTGKIQQGKQIHGL 146

Query: 148 VFKLGFGFDKFVLSSLVSMYAKFGEID----------LGRRVFDAMD----DKDLVSWNC 193
             K GFG D+FV+S+LV MY   G +           + R +   +D    D ++V WN 
Sbjct: 147 ALKYGFGGDEFVMSNLVRMYVICGLMKDACVLFYKNIIEREMVMMIDRRKRDGEVVLWNV 206

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM-------P 246
           +IDGY++ G+ + A  LFD+M  R + SW  ++ G+S+ G  + A E+F  M       P
Sbjct: 207 MIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGFFKDAVEVFREMKKGEDIRP 266

Query: 247 NR-NLVS---------------W-----------------NAMINGYMKAGDVDSACELF 273
           N   LVS               W                 +A+I+ Y K G ++ A  +F
Sbjct: 267 NYVTLVSVLPAVSRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIMVF 326

Query: 274 DDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLN 333
           + +   ++ITW++MI G+ ++G+  +A++    M    V P+D   ++ L+A +   ++ 
Sbjct: 327 ERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHAGLVE 386

Query: 334 KGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLG 393
           +GR   S +V     VDG+                          + ++ H+  M+  LG
Sbjct: 387 EGRRYFSQMVS----VDGL--------------------------EPRIEHYGCMVDLLG 416

Query: 394 MHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN 445
             G+  +A +    +  M +KP  + +  +L AC     V  G+R  N++++
Sbjct: 417 RLGLLDEAEEF---ILNMPIKPDDVIWKALLGACRMHRNVEMGKRVANILMD 465


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 255/664 (38%), Positives = 391/664 (58%), Gaps = 17/664 (2%)

Query: 38  QQLHAL-SVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKC 96
           ++LH + S  T       +++R++++Y      +   +R +FD+ L+  +L  +N ++  
Sbjct: 125 RRLHEMVSASTQFCNDFVLNTRIITMY--SMCGSPSDSRMVFDK-LRRKNLFQWNAIVSA 181

Query: 97  YVFNQRSHEALTLFCDLLDRFL-LPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF 155
           Y  N+   +A+++F +L+      PDNFTLPCVIK  A L  +  G+ IHG+  K+    
Sbjct: 182 YTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVS 241

Query: 156 DKFVLSSLVSMYAKFGEIDLG-RRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
           D FV ++L++MY K G ++   +RVFD MD K + SWN L+ GY +  +   A+ L+ +M
Sbjct: 242 DVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQM 301

Query: 215 PDR----DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWN-----AMINGYMKAGD 265
            D     D F+   L+   S+   +    EI +    RN ++ +     ++++ Y+  G 
Sbjct: 302 TDSGLDPDWFTIGSLLLACSRMKSLHYGEEI-HGFALRNGLAVDPFIGISLLSLYICCGK 360

Query: 266 VDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSA 325
             +A  LFD ME R L++WN MIAGY  NG   EA+ L   ML   + P +  ++    A
Sbjct: 361 PFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGA 420

Query: 326 VAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHW 385
            + L+ L  G+ +H + +K     D  + + +I MY+K G I  +  +F  + +K V  W
Sbjct: 421 CSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASW 480

Query: 386 TAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN 445
             +I G G+HG   +AL+LF KM R+G+KP   TF G+L ACSHAGLV DG  YFN M+N
Sbjct: 481 NVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLN 540

Query: 446 DYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGE 505
            + IEP +EHY C+VD+L R G +++A   IE MP  P+  IW SLLS  R HGN  +GE
Sbjct: 541 LHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGE 600

Query: 506 YAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVL 565
             AN L+++ P+    YV++SN++A +G+WD V  VR  MK  G +KD G S IE  G +
Sbjct: 601 KVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKV 660

Query: 566 HEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERL 625
           H F++GD+  P+ +E+      +  K+ + G+ PDT  VL  +E++ +K   L  HSE+L
Sbjct: 661 HNFLIGDEMLPELEEVRETWRRLEVKISSIGYTPDTGSVLHDLEEE-DKIGILRGHSEKL 719

Query: 626 AIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSC 685
           AI+FGL+N     P+R+ KNLR+C DCH+  K +S + NR+I+VRDN RFHHF++G CSC
Sbjct: 720 AISFGLLNTAKGLPVRVYKNLRICGDCHNAAKFISKVVNRDIVVRDNKRFHHFRDGICSC 779

Query: 686 KDFW 689
            D+W
Sbjct: 780 GDYW 783


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 262/708 (37%), Positives = 401/708 (56%), Gaps = 62/708 (8%)

Query: 41  HALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQH--PSLVLYNLLIKCYV 98
           HA   ++    +  + + ++S+Y       L +A ++FD +       LV +N ++  Y+
Sbjct: 282 HATVSRSGFASNVFVCNAVVSMY--GKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYM 339

Query: 99  FNQRSHEALTLFCDLLDRFLL-PDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
           +   ++ AL LF  +  R L+ PD  +L  ++   A L A   G+Q+HG   + G   D 
Sbjct: 340 WASDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDDV 399

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
           FV +++V MYAK G+++   +VF  M  KD+VSWN ++ GY + G +E A+ LF+ M + 
Sbjct: 400 FVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEE 459

Query: 218 ----DLFSWTCLVDGFSKCGKVEIAREIFYRM------PNR-NLVSW------------- 253
               D+ +WT ++ G+++ G+   A ++F +M      PN   LVS              
Sbjct: 460 NIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHG 519

Query: 254 ---------------------------NAMINGYMKAGDVDSACELFDDMEI--RDLITW 284
                                      N +I+ Y K    + A ++FD +    RD++TW
Sbjct: 520 KETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTW 579

Query: 285 NSMIAGYELNGRFMEALELLETMLIGD--VLPNDATLVSALSAVAGLAVLNKGRWMHSYI 342
             MI GY  +G    AL+L   M   D  + PND TL  AL A A LA L  GR +H+Y+
Sbjct: 580 TVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAYV 639

Query: 343 VKNGF-VVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQA 401
           ++N +  V   +   LI MYSK G +++A  VF  + ++    WT+++ G GMHG    A
Sbjct: 640 LRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQRNAVSWTSLMTGYGMHGRGEDA 699

Query: 402 LDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVD 461
           L +F++M ++ + P  ITF+ VL ACSH+G+V+ G  +FN M  D+G++P  EHY C+VD
Sbjct: 700 LRVFDEMRKVPLVPDGITFLVVLYACSHSGMVDHGINFFNRMSKDFGVDPGPEHYACMVD 759

Query: 462 ILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGC 521
           +  R G L EA   I  MPM P  V+W++LLS  R H N ++GE+AAN L+++     G 
Sbjct: 760 LWGRAGRLGEAMKLINEMPMEPTPVVWVALLSACRLHSNVELGEFAANRLLELESGNDGS 819

Query: 522 YVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEI 581
           Y +LSNIYA A +W  V+ +R  MK+ G +K PG S I+ R  +  F VGD+SHPQ+ +I
Sbjct: 820 YTLLSNIYANARRWKDVARIRYTMKRTGIKKRPGCSWIQGRKGVATFYVGDRSHPQSQQI 879

Query: 582 HSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIR 641
           +  L+++  ++KA G+VP T+  L  ++D+ EK   L  HSE+LA+A+G++ +  R+PIR
Sbjct: 880 YETLADLIQRIKAIGYVPQTSFALHDVDDE-EKGDLLFEHSEKLALAYGILTLHPRAPIR 938

Query: 642 IVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           I KNLR+C DCHS    +S I   EII+RD+SRFHHFKNGSCSCK +W
Sbjct: 939 ITKNLRICGDCHSAITYISKIIEHEIILRDSSRFHHFKNGSCSCKGYW 986



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 142/602 (23%), Positives = 238/602 (39%), Gaps = 103/602 (17%)

Query: 9   SSPIHALQQHLPS-RLHWNILKFSSTHKET-----QQLHALSVKTNLIYHSGISSRLLSL 62
           +S +    QH P  R  W     +  H        Q++    V+T   Y   I     S+
Sbjct: 51  TSSVRVYDQHQPQHRPPWTDFDVAYYHSYAHLGIHQEMIKDRVRTE-TYRDAIMQHQSSI 109

Query: 63  YVDPHINNLHYARSIFDRILQ---HPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLL 119
              P I      R +F  +LQ   H      ++L++C+    +  ++      LL    +
Sbjct: 110 AGKPAI------RIVFVSVLQQLHHRYRCSISMLLRCFPIKSKLLQSQFTNTRLLSCATI 163

Query: 120 PDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRV 179
           P      C     A+L  + +   + GL+F L        ++S  + YA    I L  R+
Sbjct: 164 PITALKECNSLAHAKL--LHQQSIMQGLLFHLATNLIGTYIASNSTAYA----ILLLERL 217

Query: 180 FDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKCG 233
                   +  WN LI   +  G       L+ +M      PD   F +      F  C 
Sbjct: 218 --PPSPSSVFWWNQLIRRALHLGSPRDVFTLYRQMKSLGWTPDHYTFPFV-----FKACA 270

Query: 234 K-----------VEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDM---EIR 279
                         ++R  F      N+   NA+++ Y K G +  A  +FDD+    I+
Sbjct: 271 NLSSLSLGASLHATVSRSGF----ASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQ 326

Query: 280 DLITWNSMIAGYELNGRFMEALELLETMLIGDVL-PNDATLVSALSAVAGLAVLNKGRWM 338
           DL++WNS+++ Y        AL L   M    ++ P+  +LV+ L A A LA   +GR +
Sbjct: 327 DLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQV 386

Query: 339 HSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKV--------GH------ 384
           H + +++G V D  +G  ++ MY+KCG +E A  VF+ +  K V        G+      
Sbjct: 387 HGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRL 446

Query: 385 ---------------------WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGV 423
                                WTA+I G    G   +ALD+F +MC  G +P  +T + +
Sbjct: 447 EHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSL 506

Query: 424 LNACSHAGLVNDGRRY----FNMMINDYGIEPTIEHYGC---LVDILCRTGYLEEAKSTI 476
           L+AC   G +  G+         ++N  G +P  +       L+D+  +    E A+   
Sbjct: 507 LSACVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMF 566

Query: 477 ESM-PMRPNFVIWMSLLSGARNHGNKD------IGEYAANNLIKVAPDTIGCYVVLSNIY 529
           +S+ P   + V W  ++ G   HG+ +       G +  +  IK    T+ C +V     
Sbjct: 567 DSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARL 626

Query: 530 AA 531
           AA
Sbjct: 627 AA 628


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 245/663 (36%), Positives = 382/663 (57%), Gaps = 12/663 (1%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           ++ +QLH+  +K  + +       LL LYV     ++  A  IF+ +    ++VL+NL++
Sbjct: 262 QKGKQLHSYLLKAGMSFDYITEGSLLDLYVK--CGDIETAHDIFN-LGDRTNVVLWNLML 318

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
             Y       ++  +F  +    + P+ FT PC+++     G I+ G+QIH L  K GF 
Sbjct: 319 VAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFE 378

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
            D +V   L+ MY+K+  +D  R++ + ++ +D+VSW  +I GYV+    E A+  F EM
Sbjct: 379 SDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEM 438

Query: 215 PDRDLFSWTC-LVDGFSKCGKVEIARE-------IFYRMPNRNLVSWNAMINGYMKAGDV 266
            D  ++     L    S C  ++  R+       ++      ++  WN ++N Y + G  
Sbjct: 439 QDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRS 498

Query: 267 DSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326
           + A  LF +++ +D ITWN +I+G+  +  + +AL +   M       N  T +SA+SA+
Sbjct: 499 EEAFSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISAL 558

Query: 327 AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWT 386
           A LA + +G+ +H   VK G   +  +   LI +Y KCGSIE A  +F  +S +    W 
Sbjct: 559 ANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWN 618

Query: 387 AMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIND 446
            +I     HG   +ALDLF++M + G+KP  +TFIGVL ACSH GLV +G  YF  M N 
Sbjct: 619 TIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNV 678

Query: 447 YGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEY 506
           YG+ P  +HY C+VDIL R G L+ A+  ++ MP+  N +IW +LLS  + H N +IGE 
Sbjct: 679 YGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGEL 738

Query: 507 AANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLH 566
           AA +L+++ P     YV+LSN YA  G+W    +VR+MMK RG RK+PG S IE +  +H
Sbjct: 739 AAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVH 798

Query: 567 EFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLA 626
            F VGD+ HP +D+I+  LSE+ ++L   G+  +    L   ++Q++K+     HSE+LA
Sbjct: 799 AFFVGDRLHPLSDQIYKFLSELNDRLSKIGYKQENPN-LFHEKEQEQKDPTAFVHSEKLA 857

Query: 627 IAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCK 686
           +AFGL+ +    P+R++KNLRVC+DCHS  K  S +  REI++RD  RFHHF +GSCSC 
Sbjct: 858 VAFGLMTLPPCIPLRVIKNLRVCDDCHSWMKFTSEVTRREIVLRDVYRFHHFNSGSCSCG 917

Query: 687 DFW 689
           D+W
Sbjct: 918 DYW 920



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 123/473 (26%), Positives = 231/473 (48%), Gaps = 15/473 (3%)

Query: 36  ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIK 95
           + + +HA   K      + + + L++LY+     +   A  +F  +L     V +N LI 
Sbjct: 162 QGRMIHAQVYKQAFCSETFVGNALIALYLG--FGSFKLAERVFCDML-FCDRVTFNTLIS 218

Query: 96  CYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF 155
            +        AL +F ++    L PD  T+  ++   A +G +++GKQ+H  + K G  F
Sbjct: 219 GHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSF 278

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP 215
           D     SL+ +Y K G+I+    +F+  D  ++V WN ++  Y +  ++  + ++F +M 
Sbjct: 279 DYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQ 338

Query: 216 DRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMING-----YMKAGDV 266
              +    F++ C++   +  G++E+  +I + +  +N    +  ++G     Y K   +
Sbjct: 339 ATGIHPNKFTYPCILRTCTCTGQIELGEQI-HSLSIKNGFESDMYVSGVLIDMYSKYRCL 397

Query: 267 DSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326
           D A ++ + +E RD+++W SMIAGY  +    EAL   + M    V P++  L SA SA 
Sbjct: 398 DKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASAC 457

Query: 327 AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWT 386
           AG+  + +G  +H+ +  +G+  D  +   L+ +Y++CG  E A ++FR I  K    W 
Sbjct: 458 AGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWN 517

Query: 387 AMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIND 446
            +I G G   +  QAL +F KM + G K    TFI  ++A ++   +  G++     +  
Sbjct: 518 GLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKT 577

Query: 447 YGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
            G     E    L+ +  + G +E+AK     M +R N V W ++++    HG
Sbjct: 578 -GHTSETEVANALISLYGKCGSIEDAKMIFSEMSLR-NEVSWNTIITSCSQHG 628



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 119/466 (25%), Positives = 214/466 (45%), Gaps = 17/466 (3%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHY-ARSIFDRILQHPSLVLYNLLIKCY 97
           ++HA SV   L     I + L+ LY     N L + AR +F   L     V +  ++  Y
Sbjct: 64  EIHATSVVRGLGADRLIGNLLIDLYAK---NGLVWQARQVFKE-LSSRDHVSWVAMLSGY 119

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
                  EA  L+  +    ++P  + L  V+    +     +G+ IH  V+K  F  + 
Sbjct: 120 AQRGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSET 179

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP-- 215
           FV ++L+++Y  FG   L  RVF  M   D V++N LI G+ + G  E A+++FDEM   
Sbjct: 180 FVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLS 239

Query: 216 --DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNL----VSWNAMINGYMKAGDVDSA 269
               D  +   L+   +  G ++  +++   +    +    ++  ++++ Y+K GD+++A
Sbjct: 240 GLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETA 299

Query: 270 CELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGL 329
            ++F+  +  +++ WN M+  Y       ++ E+   M    + PN  T    L      
Sbjct: 300 HDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCT 359

Query: 330 AVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMI 389
             +  G  +HS  +KNGF  D  +  +LI MYSK   ++ A  +   + K+ V  WT+MI
Sbjct: 360 GQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMI 419

Query: 390 VGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR-YFNMMINDYG 448
            G   H    +AL  F +M   G+ P  I      +AC+    +  G + +  + ++ Y 
Sbjct: 420 AGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYA 479

Query: 449 IEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG 494
            + +I  +  LV++  R G  EEA S    +  +   + W  L+SG
Sbjct: 480 ADISI--WNTLVNLYARCGRSEEAFSLFREIDHKDE-ITWNGLISG 522



 Score =  159 bits (401), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 107/394 (27%), Positives = 191/394 (48%), Gaps = 24/394 (6%)

Query: 143 QIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKG 202
           +IH      G G D+ + + L+ +YAK G +   R+VF  +  +D VSW  ++ GY ++G
Sbjct: 64  EIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRG 123

Query: 203 EVEVAMKLFDEMPDRDLFSWTCLVDG-------FSKCGKVEI---AREIFYRMPNRNLVS 252
             + A +L+ +M       WT ++          S C K ++    R I  ++  +   S
Sbjct: 124 LGKEAFRLYSQM------HWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCS 177

Query: 253 ----WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETML 308
                NA+I  Y+  G    A  +F DM   D +T+N++I+G+   G    AL++ + M 
Sbjct: 178 ETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQ 237

Query: 309 IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIE 368
           +  + P+  T+ S L+A A +  L KG+ +HSY++K G   D +    L+ +Y KCG IE
Sbjct: 238 LSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIE 297

Query: 369 SALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACS 428
           +A  +F    +  V  W  M+V  G      ++ ++F +M   G+ P   T+  +L  C+
Sbjct: 298 TAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCT 357

Query: 429 HAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIW 488
             G +  G +  ++ I + G E  +   G L+D+  +   L++A+  +E +  R + V W
Sbjct: 358 CTGQIELGEQIHSLSIKN-GFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKR-DVVSW 415

Query: 489 MSLLSGARNHG--NKDIGEYAANNLIKVAPDTIG 520
            S+++G   H    + +  +       V PD IG
Sbjct: 416 TSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIG 449


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 248/631 (39%), Positives = 370/631 (58%), Gaps = 18/631 (2%)

Query: 76  SIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARL 135
           ++F++ +   ++  +N +I     +  S EAL  F  +    L P+  T PC IK  + L
Sbjct: 106 TLFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSAL 165

Query: 136 GAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLI 195
             +  G+Q H      GF  D FV S+LV MY+K GE+   R +FD +  +++VSW  +I
Sbjct: 166 LDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMI 225

Query: 196 DGYVKKGEVEVAMKLFDEMPDRDLFSW---------TCLVDGFSKCGKVE-------IAR 239
            GYV+  +   A+ LF E    +  S            +V   S C +V        +  
Sbjct: 226 TGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHG 285

Query: 240 EIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFME 299
            +  R    +L   N +++ Y K G++  +  +FD M  RD+I+WNS+IA Y  NG   E
Sbjct: 286 FLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTE 345

Query: 300 ALELLETMLI-GDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLI 358
           ++E+   M+  G++  N  TL + L A A       G+ +H  ++K G   +  +GT +I
Sbjct: 346 SMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSII 405

Query: 359 QMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI 418
            MY KCG +E A   F  + +K V  W+AM+ G GMHG A +AL++F +M   G+KP  I
Sbjct: 406 DMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYI 465

Query: 419 TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIES 478
           TF+ VL ACSHAGL+ +G  +F  M +++ +EP +EHYGC+VD+L R GYL+EA   I+ 
Sbjct: 466 TFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKG 525

Query: 479 MPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKV 538
           M +RP+FV+W +LL   R H N D+GE +A  L ++ P   G YV+LSNIYA AG+W+ V
Sbjct: 526 MKLRPDFVVWGALLGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDV 585

Query: 539 SEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHV 598
             +R +MK  G  K PG S ++ +G +H F+VGD+ HPQ ++I+  L ++  KL+  G+V
Sbjct: 586 ERMRILMKNSGLVKPPGFSLVDIKGRVHVFLVGDREHPQHEKIYEYLEKLSMKLQEVGYV 645

Query: 599 PDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKL 658
           PD T VL  +   +EKE  L  HSE+LA+AFG++N    + I I+KNLRVC DCH+  K 
Sbjct: 646 PDMTSVLHDV-GHEEKEMVLRVHSEKLAVAFGIMNTVPGTTIHIIKNLRVCGDCHTAIKF 704

Query: 659 LSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           +S I +REI+VRD+ RFHHF++G CSC D+W
Sbjct: 705 ISKIVDREIVVRDSKRFHHFRDGLCSCGDYW 735


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 272/725 (37%), Positives = 382/725 (52%), Gaps = 86/725 (11%)

Query: 50  IYHSGISSRLLSLYVDPHINNLHYARSIF-DRILQHPSLVLYNLLIKCYVFNQRSHEALT 108
           I    I +R   +       N + AR IF    L     V YN +I  Y  N     A+ 
Sbjct: 76  IRQPDIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIE 135

Query: 109 LFCDLLDRFLLPDNFTLPCVIKGAARL-GAIKEGKQIHGLVFKLGFGFDKFVLSSLVSM- 166
           LF DLL     PDNFT   V+   A +    K+ +QIH  V K G GF   VL++L+S+ 
Sbjct: 136 LFRDLLRNGFRPDNFTFTSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVF 195

Query: 167 ---------------------------------------YAKFGEIDLGRRVFDAMDDKD 187
                                                  Y + GE+D  R+  D M +K 
Sbjct: 196 VKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKL 255

Query: 188 LVSWNCLIDGYVKKGEVEVAMKLFDEMP----DRDLFSWT-----CLVDGFS-------- 230
           +V+WN +I GYV  G    A+++F +M       D F++T     C   GF         
Sbjct: 256 VVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHA 315

Query: 231 --------------------------KCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAG 264
                                     KCGKV+ AR++F +MP ++LVSWNA+++GY+ AG
Sbjct: 316 YILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAG 375

Query: 265 DVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS 324
            +D A   F++M  R+L+TW  MI+G   NG   E+L+L   M      P D     A+ 
Sbjct: 376 RIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAII 435

Query: 325 AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGH 384
           A A LA L  GR +H+ +V+ GF      G  LI MY+KCG +E+A  +F  +       
Sbjct: 436 ACAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVS 495

Query: 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMI 444
           W AMI  LG HG   QAL+LF  M +  + P  ITF+ VL+ CSHAGLV +G RYF  M 
Sbjct: 496 WNAMIAALGQHGHGAQALELFELMLKEDILPDRITFLTVLSTCSHAGLVEEGHRYFKSMS 555

Query: 445 NDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIG 504
             YGI P  +HY  ++D+LCR G   EAK  IE+MP+ P   IW +LL+G R HGN D+G
Sbjct: 556 GLYGICPGEDHYARMIDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLAGCRIHGNMDLG 615

Query: 505 EYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGV 564
             AA  L ++ P   G YV+LSN+YA  G+WD V++VR++M+ +G +K+PG S IE    
Sbjct: 616 IQAAERLFELMPQHDGTYVLLSNMYATVGRWDDVAKVRKLMRDKGVKKEPGCSWIEVENK 675

Query: 565 LHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSER 624
           +H F+V D  HP+   +++ L E+  K++  G++PDT  VL  +E + +KE  L  HSE+
Sbjct: 676 VHVFLVDDIVHPEVQAVYNYLEELGLKMRKLGYIPDTKFVLHDMESE-QKEYVLSTHSEK 734

Query: 625 LAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCS 684
           LA+ FGL+ +   + +R+ KNLR+C DCH+  K +S +  REI+VRD  RFHHFKNG CS
Sbjct: 735 LAVGFGLLKLPLGATVRVFKNLRICGDCHNAFKFMSKVVEREIVVRDGKRFHHFKNGECS 794

Query: 685 CKDFW 689
           C ++W
Sbjct: 795 CGNYW 799



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 100/405 (24%), Positives = 170/405 (41%), Gaps = 79/405 (19%)

Query: 192 NCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLV 251
           N LID Y K  ++  A  LFDE+   D+ + T L+   S  G   +AREIF+  P     
Sbjct: 54  NRLIDVYCKSSDLVSAHHLFDEIRQPDIVARTTLIAAHSSAGNSNLAREIFFATP----- 108

Query: 252 SWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGD 311
                                   + IRD + +N+MI GY  N     A+EL   +L   
Sbjct: 109 ------------------------LGIRDTVCYNAMITGYSHNNDGFGAIELFRDLLRNG 144

Query: 312 VLPNDATLVSALSAVAGLAVLNKG-RWMHSYIVK--NGFVV------------------- 349
             P++ T  S L A+A +    K  + +H  +VK  +GFV                    
Sbjct: 145 FRPDNFTFTSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCASSPLV 204

Query: 350 -------------------DGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIV 390
                              D +  T +I  Y + G +++A      +++K V  W AMI 
Sbjct: 205 SSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMIS 264

Query: 391 GLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDY--- 447
           G   HG   +AL++F KM  +G++    T+  VL+AC++AG    G++    ++      
Sbjct: 265 GYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRP 324

Query: 448 GIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYA 507
            ++ ++     L  +  + G ++EA+     MP++ + V W ++LSG  N G  D     
Sbjct: 325 SLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVK-DLVSWNAILSGYVNAGRID----E 379

Query: 508 ANNLIKVAPD-TIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFR 551
           A +  +  P+  +  + V+ +  A  G  ++  ++   MK  GF 
Sbjct: 380 AKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFE 424


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1005

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 246/667 (36%), Positives = 386/667 (57%), Gaps = 12/667 (1%)

Query: 31   SSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLY 90
            S   +  Q +H+L+++        IS  L+ +Y    +     A  +F RI + P +V +
Sbjct: 343  SGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAG--DALKVFVRI-EDPDVVSW 399

Query: 91   NLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFK 150
            + +I C     +S EA  +F  +    ++P+ FTL  ++  A  LG +  G+ IH  V K
Sbjct: 400  SAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHACVCK 459

Query: 151  LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
             GF +D  V ++LV+MY K G +  G RVF+A  ++DL+SWN L+ G+      +  +++
Sbjct: 460  YGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRI 519

Query: 211  FDEMP----DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNL----VSWNAMINGYMK 262
            F++M     + +++++  ++   S    V++ +++  ++   +L        A+++ Y K
Sbjct: 520  FNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAK 579

Query: 263  AGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSA 322
               ++ A  +F+ +  RDL  W  ++AGY  +G+  +A++    M    V PN+ TL S+
Sbjct: 580  NRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASS 639

Query: 323  LSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKV 382
            LS  + +A L+ GR +HS  +K G   D  + + L+ MY+KCG +E A  VF  +  +  
Sbjct: 640  LSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDT 699

Query: 383  GHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNM 442
              W  +I G   HG   +AL  F  M   G  P  +TFIGVL+ACSH GL+ +G+++FN 
Sbjct: 700  VSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNS 759

Query: 443  MINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKD 502
            +   YGI PTIEHY C+VDIL R G   E +S IE M +  N +IW ++L   + HGN +
Sbjct: 760  LSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIE 819

Query: 503  IGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHR 562
             GE AA  L ++ P+    Y++LSN++AA G WD V+ VR +M  RG +K+PG S +E  
Sbjct: 820  FGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVN 879

Query: 563  GVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHS 622
            G +H F+  D SHP+  EIH KL ++  KL + G+ P+T  VL  + D +EK+  L  HS
Sbjct: 880  GQVHVFLSHDGSHPKIREIHLKLQDLHQKLMSVGYTPNTDHVLHNVSD-REKQELLFYHS 938

Query: 623  ERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGS 682
            ERLA+AF L++  +R  IRI KNLR+C DCH   K +S I N+E++VRD + FHHFKNGS
Sbjct: 939  ERLALAFALLSTSTRKTIRIFKNLRICGDCHDFMKSISEITNQELVVRDINCFHHFKNGS 998

Query: 683  CSCKDFW 689
            CSC++FW
Sbjct: 999  CSCQNFW 1005



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 138/540 (25%), Positives = 254/540 (47%), Gaps = 38/540 (7%)

Query: 8   HSSPIHALQQHLPSRLHWNILKFSSTHK------------------ETQQLHALSVKTNL 49
           +S+P + + + +  +  W  L F S  +                  E + +H   +K+ +
Sbjct: 100 NSTPGNKIPETVEKKRIWRGLDFDSKGRLRQYSGMLRTCASKGDLNEGKAIHGQVIKSGI 159

Query: 50  IYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTL 109
              S + + L+++Y      + +YA  +F  I +   +V +  LI  +V       A+ L
Sbjct: 160 NPDSHLWNSLVNVYA--KCGSANYACKVFGEIPER-DVVSWTALITGFVAEGYGSGAVNL 216

Query: 110 FCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAK 169
           FC++    +  + FT    +K  +    ++ GKQ+H    K+G   D FV S+LV +YAK
Sbjct: 217 FCEMRREGVEANEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAK 276

Query: 170 FGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCL 225
            GE+ L  RVF  M  ++ VSWN L++G+ + G+ E  + LF  M   ++    F+ + +
Sbjct: 277 CGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTV 336

Query: 226 VDGFSKCGKVEIAREIFYRMPNR------NLVSWNAMINGYMKAGDVDSACELFDDMEIR 279
           + G +  G +  A +I + +  R        +S   +++ Y K G    A ++F  +E  
Sbjct: 337 LKGCANSGNLR-AGQIVHSLAIRIGCELDEFISC-CLVDMYSKCGLAGDALKVFVRIEDP 394

Query: 280 DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMH 339
           D+++W+++I   +  G+  EA E+ + M    V+PN  TL S +SA   L  L  G  +H
Sbjct: 395 DVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIH 454

Query: 340 SYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMAT 399
           + + K GF  D  +   L+ MY K GS++    VF A + + +  W A++ G   +    
Sbjct: 455 ACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCD 514

Query: 400 QALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCL 459
             L +FN+M   G  P   TFI +L +CS    V+ G++    ++ +  ++        L
Sbjct: 515 TGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKN-SLDGNDFVGTAL 573

Query: 460 VDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTI 519
           VD+  +  +LE+A++    +  R  F  W  +++G    G    GE A    I++  + +
Sbjct: 574 VDMYAKNRFLEDAETIFNRLIKRDLFA-WTVIVAGYAQDGQ---GEKAVKCFIQMQREGV 629


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 252/676 (37%), Positives = 398/676 (58%), Gaps = 17/676 (2%)

Query: 27  ILKFSSTHKETQQLHALSVKTNLIYHSGISS-RLLSLYVDPHINNLHYARSIFDRILQHP 85
           +++ +       QLHA +++  L++ +  +S  L+  Y+      +  A  +FD + +  
Sbjct: 75  LVRAAPGPASAAQLHACALRLGLLHPNVFASGSLVHAYL--RFGRVAEAYRVFDEMPER- 131

Query: 86  SLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIH 145
            +  +N ++     N R+ +A+TL   ++   +  D  TL  V+     LG       +H
Sbjct: 132 DVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMCVVLGDRALALVMH 191

Query: 146 GLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVE 205
               K G   + FV ++L+ +Y K G +     VF  M  +DLV+WN +I    + G+V 
Sbjct: 192 VYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQGGKVA 251

Query: 206 VAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREIFYRMPNR-----NLVSWNAM 256
            A++LF  M +     D+ +   L    ++CG    A+ +   +  R     ++++ NAM
Sbjct: 252 AAVELFHGMMESGVCPDVLTLVSLASAVAQCGDELGAKSVHCYVRRRGWDVGDIIAGNAM 311

Query: 257 INGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL-PN 315
           ++ Y K   +D+A ++FD++  RD+++WN++I GY  NG   EA+ +   M   + L P 
Sbjct: 312 VDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPI 371

Query: 316 DATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFR 375
             T VS L A + L  L +G  MH+  +K G  +D  + T LI +Y+KCG +  A+ +F 
Sbjct: 372 QGTFVSVLPAYSYLGGLQQGMRMHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFE 431

Query: 376 AISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVND 435
            + ++  G W A+I GLG+HG   +AL LF++M +  +KP  +TF+ +L ACSHAGLV+ 
Sbjct: 432 HMPRRSTGPWNAIIAGLGVHGHGAKALSLFSQMQQEEIKPDHVTFVSLLAACSHAGLVDQ 491

Query: 436 GRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGA 495
           GR +F++M   YGI P  +HY C+VD+L R G L+EA   I+SMP++P+  +W +LL   
Sbjct: 492 GRSFFDLMQTVYGIVPIAKHYTCMVDMLGRAGQLDEAFEFIQSMPIKPDSAVWGALLGAC 551

Query: 496 RNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPG 555
           R HGN ++G+ A+ NL ++ P+ +G YV++SN+YA  G+WD V  VR +++++  +K PG
Sbjct: 552 RIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKIGKWDGVDAVRSLVRRQNLQKTPG 611

Query: 556 SSSIEHRGVLHEFVVGDKS--HPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKE 613
            SS+E +G +  F  G ++  HPQ +EI   L ++  K+K+AG+VPD + VL  +E + E
Sbjct: 612 WSSMEVKGSVSVFYSGTQTEPHPQHEEIQRGLHDLLAKMKSAGYVPDYSFVLQDVE-EDE 670

Query: 614 KEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNS 673
           KE  L NHSERLAIAFG+IN    +P+ I KNLRVC DCHS TK +S I  REIIVRD +
Sbjct: 671 KEQILNNHSERLAIAFGIINTPPGTPLHIYKNLRVCGDCHSATKYISKITEREIIVRDAN 730

Query: 674 RFHHFKNGSCSCKDFW 689
           RFHHFK+G CSC DFW
Sbjct: 731 RFHHFKDGHCSCGDFW 746



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 143/485 (29%), Positives = 226/485 (46%), Gaps = 23/485 (4%)

Query: 78  FDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLD--RFLLPDNFTLPCVIKGAARL 135
            D  LQ P L+L N LI  +        AL L   LL     L PD+FT P +++ A   
Sbjct: 23  LDPHLQVPPLLLVNSLIAAFSRAALPRLALPLLRRLLAGAHPLRPDSFTFPPLVRAAP-- 80

Query: 136 GAIKEGKQIHGLVFKLG-FGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCL 194
                  Q+H    +LG    + F   SLV  Y +FG +    RVFD M ++D+ +WN +
Sbjct: 81  -GPASAAQLHACALRLGLLHPNVFASGSLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAM 139

Query: 195 IDGYVKKGEVEVAMKLFDEMPDR----DLFSWT-----CLVDGFSKCGKVEIAREIFYRM 245
           + G  +      A+ L   M       D  + +     C+V G      V     + + +
Sbjct: 140 LSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMCVVLGDRALALVMHVYAVKHGL 199

Query: 246 PNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLE 305
                V  NA+I+ Y K G +  A  +F  M +RDL+TWNS+I+  E  G+   A+EL  
Sbjct: 200 SGELFVC-NALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVELFH 258

Query: 306 TMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGF-VVDGVLGTLLIQMYSKC 364
            M+   V P+  TLVS  SAVA        + +H Y+ + G+ V D + G  ++ MY+K 
Sbjct: 259 GMMESGVCPDVLTLVSLASAVAQCGDELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYAKM 318

Query: 365 GSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKM-CRMGMKPTAITFIGV 423
             I++A  VF  +  + V  W  +I G   +G+A +A+ ++N M    G+KP   TF+ V
Sbjct: 319 SKIDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSV 378

Query: 424 LNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRP 483
           L A S+ G +  G R   + I   G+   +    CL+D+  + G L EA    E MP R 
Sbjct: 379 LPAYSYLGGLQQGMRMHALSIKT-GLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRS 437

Query: 484 NFVIWMSLLS--GARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEV 541
               W ++++  G   HG K +  ++     ++ PD +  +V L    + AG  D+    
Sbjct: 438 TGP-WNAIIAGLGVHGHGAKALSLFSQMQQEEIKPDHV-TFVSLLAACSHAGLVDQGRSF 495

Query: 542 REMMK 546
            ++M+
Sbjct: 496 FDLMQ 500


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 248/655 (37%), Positives = 392/655 (59%), Gaps = 12/655 (1%)

Query: 45  VKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSH 104
           V T  I+H    ++L++  +      + YA S+F    +   ++ +N +++ +V +    
Sbjct: 2   VVTGFIHHKPSLNKLIAHVLSMGSLGVGYAYSVFAHT-RELDVLTWNSMLRAFVNSNMPR 60

Query: 105 EALTLFCDLLDRFL-LPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSL 163
            AL  + ++L+R   +PD FT P ++KG A L   K GK +HG V K     D ++ ++L
Sbjct: 61  RALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTL 120

Query: 164 VSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR----DL 219
           ++MYA  G++   R +F+ M  ++ V W  +I GY+K      A+ L+ +M +     D 
Sbjct: 121 LNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDE 180

Query: 220 FSWTCLVDGFSKCGKVEIAREIFYRMPNRNL----VSWNAMINGYMKAGDVDSACELFDD 275
            +   LV   ++   + +  ++   +   ++    V  +A++N Y K GD+ +A ++FD 
Sbjct: 181 VTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDK 240

Query: 276 MEIRDLITWNSMIAGYELNGRFMEALELLETMLIG-DVLPNDATLVSALSAVAGLAVLNK 334
           +  +D+  W+++I GY  N R  EAL+L   +  G ++ PN+ T+++ +SA A L  L  
Sbjct: 241 LSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLET 300

Query: 335 GRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGM 394
           GRW+H YI +        L   LI M+SKCG I++A  +F ++S K +  W +M+ G  +
Sbjct: 301 GRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGFAL 360

Query: 395 HGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIE 454
           HG+  +AL  F  M    ++P  ITFIGVL ACSHAGLV +G++ F  +   YG+    E
Sbjct: 361 HGLGREALAQFRLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSE 420

Query: 455 HYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKV 514
           HYGC+VD+LCR G L EA+  I  MP++P+  IW S+L   R + N ++GE AA  L+K+
Sbjct: 421 HYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARFLLKL 480

Query: 515 APDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKS 574
            P   G Y++LSNIYA    W++V +VRE+M ++G +K PG SS+    + H F+ GD S
Sbjct: 481 EPTNDGVYILLSNIYAKRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAGDCS 540

Query: 575 HPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINV 634
           HP+  EI   L ++R KLK AG+V DT++VLL I+D K KE  +  HSE+LA+ +GL+  
Sbjct: 541 HPEIAEISIMLRQVREKLKLAGYVADTSEVLLNIDDNK-KEESVSQHSEKLALCYGLLKS 599

Query: 635 KSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           +    I I+KNLRVC+DCH++ KL+S IY R+I +RD +RFHHFK+GSCSC+D+W
Sbjct: 600 EIGGRIVILKNLRVCSDCHTLIKLVSKIYQRQITLRDRNRFHHFKDGSCSCRDYW 654


>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
 gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
          Length = 744

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 280/739 (37%), Positives = 405/739 (54%), Gaps = 87/739 (11%)

Query: 33  THKETQQLHA-LSVKTNLIYHSGISSRLLSLYV---DPHINNLHYARSIFDRILQHPSLV 88
           T ++  +LHA L+   +L+ H   +  LL+  V   +PH  +L YA  +FDR+   PS  
Sbjct: 11  TVRQAAELHARLTTSGHLLLHPPSARHLLNSLVNCLEPHPLHLRYALHLFDRM--PPSTF 68

Query: 89  LYNLLIK-CYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIK---GAARLGAIKEGKQI 144
           L++  ++ C       H    LF  +    + PD FT   + K    ++R  ++     +
Sbjct: 69  LFDTALRACSRAGSDPHRPFLLFRRMRRAGVRPDGFTFHFLFKCSSSSSRPHSLLLCTML 128

Query: 145 HGLVFKLGF-GFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD---------------- 187
           H    +        FV +SL+ MY + G     RR FD +  KD                
Sbjct: 129 HAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGM 188

Query: 188 ---------------LVSWNCLIDGYVKKGEVEVAMKLFDEM------PD---------- 216
                          ++SW  LI  Y +      A+  F  M      PD          
Sbjct: 189 LCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSA 248

Query: 217 ----------RDLFSWT-------------CLVDGFSKCGKVEIAREIF---YRMPNRNL 250
                     R L                  L+D ++KCG    A+++F    R P    
Sbjct: 249 CAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQ- 307

Query: 251 VSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIG 310
            SWNA+I+GY K G VD A  LFD+ME+RD+IT+NSM+ GY  +G+  EAL L  +M   
Sbjct: 308 -SWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRH 366

Query: 311 DVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESA 370
           D+  ++ T+V+ L+A A L  L +GR +H+ I +     D  LGT L+ MY KCG ++ A
Sbjct: 367 DLRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEA 426

Query: 371 LTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHA 430
             VF+ + K+ V  WTAMI GL  +GM   AL+ F +M   G +P ++++I VL ACSH+
Sbjct: 427 TIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTACSHS 486

Query: 431 GLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMS 490
            L+N+GR YF+ M   Y I P IEHYGC++D+L R+G L+EA   +++MP++PN VIW S
Sbjct: 487 CLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQPNAVIWAS 546

Query: 491 LLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGF 550
           +LS  R H + D+ + AA +L+K+ PD  G YV L NIY  + QW+  S++R +M++R  
Sbjct: 547 ILSACRVHKHIDLAQCAAEHLLKLEPDEDGVYVQLYNIYIDSRQWENASKIRMLMEERQV 606

Query: 551 RKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIED 610
           +K  G SSI   G +H+FVV DKSHP+  EI + L E+ ++LK+ G+ P T+Q+ + + D
Sbjct: 607 KKTAGYSSITVAGQVHKFVVSDKSHPRILEIIAMLEEISHRLKSLGYSPLTSQITVDV-D 665

Query: 611 QKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVR 670
           ++EKE  L  HSE+LAIAFGLIN+    P+ I KNLRVC DCHS  KL+S ++NREIIVR
Sbjct: 666 EEEKEQALLAHSEKLAIAFGLINLAPNLPVHIRKNLRVCEDCHSAIKLISRLWNREIIVR 725

Query: 671 DNSRFHHFKNGSCSCKDFW 689
           D SRFHHF+ G+CSC DFW
Sbjct: 726 DRSRFHHFREGTCSCNDFW 744


>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
 gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
          Length = 642

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 255/659 (38%), Positives = 381/659 (57%), Gaps = 39/659 (5%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           +  +Q+ AL  KT L  +  +S +LL        ++LHYAR +F  I ++P + +YN LI
Sbjct: 19  RTVKQIQALIFKTCLNSYPLVSGKLLLHCAVTLPDSLHYARRLFLDI-RNPDVFMYNTLI 77

Query: 95  KCYVFNQRSHEALTLFCDLLDRFL-LPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGF 153
           +    +     AL LF ++  + + LPD+F+   ++K AA   A+  G Q+H L   +G+
Sbjct: 78  RGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLLKAAANCRALTNGLQLHCLA--VGY 135

Query: 154 GFDK--FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLF 211
           G D   FV ++L+SMYA+                       CL+           A K+F
Sbjct: 136 GLDSHLFVGTTLISMYAECA---------------------CLV----------FARKVF 164

Query: 212 DEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACE 271
           DEM + ++ +W  +V    +C  V+ A ++F  MP RNL SWN M+ GY KAG++  A E
Sbjct: 165 DEMIEPNIVAWNAIVAACFRCEGVKDAEQVFRCMPIRNLTSWNIMLAGYTKAGELQLARE 224

Query: 272 LFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAV 331
           +F  M ++D ++W++MI G+  NG F +A      +    + PN+ +L   LSA A    
Sbjct: 225 VFMKMPLKDDVSWSTMIVGFAHNGNFNDAFAFFREVRREGMRPNEVSLTGVLSACAQAGA 284

Query: 332 LNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVG 391
              GR +H ++ K+GF+    +   LI  YSKCG+++ A  VF  + ++    WTAMI G
Sbjct: 285 FEFGRILHGFVEKSGFLQIISVNNALIDTYSKCGNLDMARLVFDNMLRRSAVSWTAMIAG 344

Query: 392 LGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP 451
           + MHG   +A+ LFN+M    +KP +ITFI +L ACSHAGLV+ G  YF+ M+N YGIEP
Sbjct: 345 MAMHGYGEEAIRLFNEMEESNIKPDSITFISILYACSHAGLVDLGCSYFSRMVNTYGIEP 404

Query: 452 TIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNL 511
            IEHYGC+VD+  R G L++A   +  MP+ PN ++W +LL     HGN  +       L
Sbjct: 405 VIEHYGCMVDLYGRAGKLQQAYDFVCQMPISPNDIVWRTLLGACSIHGNLYLAGQVKRQL 464

Query: 512 IKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVG 571
            ++ P+  G +V+LSNIYA AG+W  V+ +R  M  +  +K PG S IE   +++ FV G
Sbjct: 465 SELDPENSGDHVLLSNIYAVAGKWKDVAALRRSMTHQRLKKTPGWSMIEVNRIIYSFVAG 524

Query: 572 DKSHPQTDEIHSKLSEMRNKLK-AAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFG 630
           +K +    E H KL E+ ++L+   G+VP+   VL  IE + EKE  +  HSE+LA+AFG
Sbjct: 525 EKQNDIAVEAHQKLREIMSRLRIEGGYVPEVGSVLHDIEVE-EKEDSVSQHSEKLAVAFG 583

Query: 631 LINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           +  +     IR+VKNLR+C DCH+V KL+S +Y  EI+VRD SRFH F +GSCSC+D+W
Sbjct: 584 MAKLPRGRAIRVVKNLRICRDCHTVMKLISKVYEVEIVVRDRSRFHSFTHGSCSCRDYW 642


>gi|449432255|ref|XP_004133915.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Cucumis sativus]
 gi|449480068|ref|XP_004155790.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Cucumis sativus]
          Length = 638

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 246/604 (40%), Positives = 362/604 (59%), Gaps = 45/604 (7%)

Query: 27  ILKFSSTHKETQQLHALSVKTNLIYHSGISSRL-LSLYVDPHINNLHYARSIF------D 79
           +L+   T  +  Q+HA  +KT  + +S +++++ L+    PH   + +AR +F       
Sbjct: 20  LLRHCETQNDVNQVHARIIKTGYLKNSSLTTKIILNSISSPHKPLVEFARYVFFTRYAVQ 79

Query: 80  RILQH---PSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLG 136
           RI ++       L+N +IK Y        AL LFC +L+     D F+   ++K  AR+ 
Sbjct: 80  RIRRNHLDDDPFLWNAVIKSYSHGNEPVRALVLFCMMLENGFCVDKFSFSLILKACARVC 139

Query: 137 AIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLID 196
            ++EGKQIHGL+ KL  G + F+L+ L++MY + G+I+  R+VFD M  +D VS+N +ID
Sbjct: 140 LVEEGKQIHGLLMKLEIGSNLFLLNCLIAMYLRCGDIEFARQVFDRMPIQDSVSYNSMID 199

Query: 197 GYVKKGEVEVAMKLFD----------------------------------EMPDRDLFSW 222
           GYVK G +++A +LFD                                  +MP+RDL SW
Sbjct: 200 GYVKSGTIDLARELFDSMPLEDKNLISWNSMLGGFAQTKDGIGLALELFEKMPERDLVSW 259

Query: 223 TCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLI 282
             ++ GF+KCG++E A  +F RMP R+++SW+ MI+GY K GD+  A  LFD+M  +D++
Sbjct: 260 NTIIGGFAKCGRIEFAHSLFNRMPKRDVISWSNMIDGYAKLGDIKVARTLFDEMPDKDVV 319

Query: 283 TWNSMIAGYELNGRFMEALELLETML-IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSY 341
            +N+++AGY  NG + EALE+   M    ++ P++ TLV ALSA++ L  + K   MH+Y
Sbjct: 320 AFNTIMAGYAQNGYYTEALEIFHEMQRQSNLSPDETTLVVALSAISQLGHVEKAASMHNY 379

Query: 342 IVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQA 401
            ++NG  V G +   LI MYSKCGSIE+A+ +F  + +K + HW AMI G+  +G+   A
Sbjct: 380 FLENGISVTGKVAVALIDMYSKCGSIENAILIFDGVDQKGIDHWNAMISGMARNGLGKLA 439

Query: 402 LDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVD 461
             +  +M R+ +KP  ITFIGVLNAC+HAGLV +G   F +M   + +EP ++HYGC+VD
Sbjct: 440 FGMLLEMHRLSVKPDGITFIGVLNACAHAGLVKEGLICFELMRKVHKLEPKLQHYGCMVD 499

Query: 462 ILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGC 521
           IL + G +E A   IE MP+ PN +IW +LLS  +NH N  IGE  A +L+ +       
Sbjct: 500 ILGKAGLVEGALKFIEEMPIEPNDIIWRTLLSACQNHENFTIGELIAKHLMTMDSCNSSS 559

Query: 522 YVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEI 581
           YV+LSNIYA  G W   S+VR MMKK+   K PG S IE  GV+HEF+V DKSHP   EI
Sbjct: 560 YVLLSNIYARLGLWSAASKVRMMMKKQNLTKVPGCSWIELEGVVHEFLVRDKSHPYVSEI 619

Query: 582 HSKL 585
           +S L
Sbjct: 620 YSVL 623


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 253/665 (38%), Positives = 393/665 (59%), Gaps = 17/665 (2%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           ++ +++HA   +  L     + + LLS+Y      ++  A  +F+ +++  ++V +  +I
Sbjct: 323 EQGKRVHARMKEVGLDTEIYVGTALLSMYTK--CGSMEDALEVFN-LVKGRNVVSWTAMI 379

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
             +  + R  EA   F  +++  + P+  T   ++   +R  A+K+G+QIH  + K G+ 
Sbjct: 380 AGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYI 439

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
            D  V ++L+SMYAK G +   R VF+ +  +++V+WN +I  YV+  + + A+  F  +
Sbjct: 440 TDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQAL 499

Query: 215 ------PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS----WNAMINGYMKAG 264
                 PD   F  T +++       +E+ + +   +      S     NA+++ ++  G
Sbjct: 500 LKEGIKPDSSTF--TSILNVCKSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCG 557

Query: 265 DVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS 324
           D+ SA  LF+DM  RDL++WN++IAG+  +G    A +  + M    V P+  T    L+
Sbjct: 558 DLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLN 617

Query: 325 AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGH 384
           A A    L +GR +H+ I +     D V+GT LI MY+KCGSI+ A  VF  + KK V  
Sbjct: 618 ACASPEALTEGRRLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYS 677

Query: 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMI 444
           WT+MI G   HG   +AL+LF +M + G+KP  ITF+G L+AC+HAGL+ +G  +F  M 
Sbjct: 678 WTSMITGYAQHGRGKEALELFCQMQQEGVKPDWITFVGALSACAHAGLIKEGLHHFESM- 736

Query: 445 NDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIG 504
            D+ IEP +EHYGC+VD+  R G L EA   I  M ++P+  +W +LL   + H + ++ 
Sbjct: 737 KDFNIEPRMEHYGCMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGALLGACQVHLDVELA 796

Query: 505 EYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGV 564
           E  A   +++ P+  G YV+LSNIYAAAG W +V+++R++M  RG  K PG S IE  G 
Sbjct: 797 EKVAQKKLELDPNDDGVYVILSNIYAAAGMWKEVTKMRKVMLDRGVVKKPGQSWIEVDGR 856

Query: 565 LHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSER 624
           +H F   DK+HPQ +EIH++L  +  ++K  G+VPDT  VL  +ED  EKE  L +HSER
Sbjct: 857 VHIFCSDDKTHPQIEEIHAELGRLHMEMKKLGYVPDTRYVLHDVEDS-EKEHALCHHSER 915

Query: 625 LAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCS 684
           LAIA+GL+     +PI I KNLRVC DCH+ TKL+S I  R+II RD++RFHHFK+G CS
Sbjct: 916 LAIAYGLLKTPPLTPIVISKNLRVCGDCHTATKLISKITKRQIIARDSNRFHHFKDGVCS 975

Query: 685 CKDFW 689
           C DFW
Sbjct: 976 CGDFW 980



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 128/449 (28%), Positives = 224/449 (49%), Gaps = 13/449 (2%)

Query: 59  LLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFL 118
           L+S+Y      N + A+ IFD  +    +  +NLL+  YV ++R  EA  L   ++   +
Sbjct: 145 LISMYAK--CGNTNSAKQIFDE-MPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGV 201

Query: 119 LPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRR 178
            PD +T   ++   A    + +G ++  L+   G+  D FV ++L++M+ K G +D   +
Sbjct: 202 KPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALK 261

Query: 179 VFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGK 234
           VF+ +  +DL++W  +I G  +  + + A  LF  M +     D  ++  L+   +    
Sbjct: 262 VFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEA 321

Query: 235 VEIAREIFYRMPNRNLVS----WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAG 290
           +E  + +  RM    L +      A+++ Y K G ++ A E+F+ ++ R++++W +MIAG
Sbjct: 322 LEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAG 381

Query: 291 YELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVD 350
           +  +GR  EA      M+   + PN  T +S L A +  + L +GR +H  I+K G++ D
Sbjct: 382 FAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITD 441

Query: 351 GVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCR 410
             + T L+ MY+KCGS+  A  VF  ISK+ V  W AMI     H     A+  F  + +
Sbjct: 442 DRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLK 501

Query: 411 MGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLE 470
            G+KP + TF  +LN C     +  G ++   +I   G E  +     LV +    G L 
Sbjct: 502 EGIKPDSSTFTSILNVCKSPDALELG-KWVQSLIIRAGFESDLHIRNALVSMFVNCGDLM 560

Query: 471 EAKSTIESMPMRPNFVIWMSLLSGARNHG 499
            A +    MP R + V W ++++G   HG
Sbjct: 561 SAMNLFNDMPER-DLVSWNTIIAGFVQHG 588



 Score =  206 bits (523), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 128/429 (29%), Positives = 220/429 (51%), Gaps = 19/429 (4%)

Query: 138 IKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDG 197
           + +G++IH  +       D F+ + L+SMYAK G  +  +++FD M DKD+ SWN L+ G
Sbjct: 120 LGDGERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGG 179

Query: 198 YVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPN---- 247
           YV+    E A +L ++M      PD+  +++  +++  +    V+   E+F  + N    
Sbjct: 180 YVQHRRYEEAFRLHEQMVQDGVKPDK--YTFVYMLNACADAKNVDKGGELFSLILNAGWD 237

Query: 248 RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETM 307
            +L    A+IN ++K G VD A ++F+++  RDLITW SMI G   + +F +A  L + M
Sbjct: 238 TDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVM 297

Query: 308 LIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSI 367
               V P+    VS L A      L +G+ +H+ + + G   +  +GT L+ MY+KCGS+
Sbjct: 298 EEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSM 357

Query: 368 ESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNAC 427
           E AL VF  +  + V  WTAMI G   HG   +A   FNKM   G++P  +TF+ +L AC
Sbjct: 358 EDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGAC 417

Query: 428 SHAGLVNDGRRYFNMMIN-DYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFV 486
           S    +  GR+  + +I   Y  +  +     L+ +  + G L +A++  E +  + N V
Sbjct: 418 SRPSALKQGRQIHDRIIKAGYITDDRVR--TALLSMYAKCGSLMDARNVFERIS-KQNVV 474

Query: 487 IWMSLLSGARNHGNKDIGEYAANNLIK--VAPDTIGCYVVLSNIYAAAGQWDKVSEVREM 544
            W ++++    H   D        L+K  + PD+   +  + N+  +    +    V+ +
Sbjct: 475 AWNAMITAYVQHEKYDNAVATFQALLKEGIKPDS-STFTSILNVCKSPDALELGKWVQSL 533

Query: 545 MKKRGFRKD 553
           + + GF  D
Sbjct: 534 IIRAGFESD 542



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 107/436 (24%), Positives = 185/436 (42%), Gaps = 107/436 (24%)

Query: 32  STHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYN 91
           S  K+ +Q+H   +K   I    + + LLS+Y      +L  AR++F+RI +  ++V +N
Sbjct: 421 SALKQGRQIHDRIIKAGYITDDRVRTALLSMYAK--CGSLMDARNVFERISKQ-NVVAWN 477

Query: 92  LLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKL 151
            +I  YV +++   A+  F  LL   + PD+ T   ++       A++ GK +  L+ + 
Sbjct: 478 AMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRA 537

Query: 152 GFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLF 211
           GF  D  + ++LVSM+   G++     +F+ M ++DLVSWN +I G+V+ GE + A   F
Sbjct: 538 GFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYF 597

Query: 212 DEM------PDR---------------------------------DLFSWTCLVDGFSKC 232
             M      PD+                                 D+   T L+  ++KC
Sbjct: 598 KMMQESGVKPDQITFTGLLNACASPEALTEGRRLHALITEAALDCDVVVGTGLISMYTKC 657

Query: 233 GKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYE 292
           G ++ A  +F+ +P +N+ SW +MI GY +                              
Sbjct: 658 GSIDDAHLVFHNLPKKNVYSWTSMITGYAQ------------------------------ 687

Query: 293 LNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV 352
            +GR  EALEL   M    V P+  T V ALSA A   ++ +G  +H +     F ++  
Sbjct: 688 -HGRGKEALELFCQMQQEGVKPDWITFVGALSACAHAGLIKEG--LHHFESMKDFNIE-- 742

Query: 353 LGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG 412
                                       ++ H+  M+   G  G+  +A++  NK   M 
Sbjct: 743 ---------------------------PRMEHYGCMVDLFGRAGLLHEAVEFINK---MQ 772

Query: 413 MKPTAITFIGVLNACS 428
           +KP +  +  +L AC 
Sbjct: 773 VKPDSRLWGALLGACQ 788



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 109/223 (48%), Gaps = 2/223 (0%)

Query: 276 MEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKG 335
           ++I++    N+ +      G+  EA+ +L ++    +  +  T  S L        L  G
Sbjct: 64  VDIKNTQRANAFLNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDG 123

Query: 336 RWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMH 395
             +H++I  +    D  +  +LI MY+KCG+  SA  +F  +  K V  W  ++ G   H
Sbjct: 124 ERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQH 183

Query: 396 GMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEH 455
               +A  L  +M + G+KP   TF+ +LNAC+ A  V+ G   F++++N  G +  +  
Sbjct: 184 RRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILN-AGWDTDLFV 242

Query: 456 YGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNH 498
              L+++  + G +++A     ++P R + + W S+++G   H
Sbjct: 243 GTALINMHIKCGGVDDALKVFNNLPRR-DLITWTSMITGLARH 284


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 246/625 (39%), Positives = 374/625 (59%), Gaps = 13/625 (2%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           A  +F+R+ Q   LV +N ++  Y  N  +  A+ +   + +    PD+ TL  V+   A
Sbjct: 196 AYKMFERMPQR-DLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVA 254

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
            L A++ G+ IHG  F+ GF +   V ++++  Y K G +   R VF  M  +++VSWN 
Sbjct: 255 DLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNT 314

Query: 194 LIDGYVKKGEVEVA----MKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRN 249
           +IDGY + GE E A    +K+ DE  +    S    +   +  G +E  R + +R+ +  
Sbjct: 315 MIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERGRYV-HRLLDEK 373

Query: 250 LVSW-----NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELL 304
            + +     N++I+ Y K   VD A  +F +++ + ++TWN+MI GY  NG   EAL L 
Sbjct: 374 KIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLF 433

Query: 305 ETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKC 364
             M   D+ P+  TLVS ++A+A L+V  + +W+H   ++     +  + T LI  ++KC
Sbjct: 434 CEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKC 493

Query: 365 GSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVL 424
           G+I++A  +F  + ++ V  W AMI G G +G   +ALDLFN+M    +KP  ITF+ V+
Sbjct: 494 GAIQTARKLFDLMQERHVITWNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVI 553

Query: 425 NACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPN 484
            ACSH+GLV +G  YF  M  +YG+EPT++HYG +VD+L R G L++A   I+ MP++P 
Sbjct: 554 AACSHSGLVEEGMYYFESMKENYGLEPTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVKPG 613

Query: 485 FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREM 544
             +  ++L   R H N ++GE  A+ L  + PD  G +V+L+N+YA+A  WDKV+ VR  
Sbjct: 614 ITVLGAMLGACRIHKNVELGEKTADELFDLDPDDGGYHVLLANMYASASMWDKVARVRTA 673

Query: 545 MKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQV 604
           M+K+G +K PG S +E R  +H F  G  +HPQ+  I++ L  + +++KAAG+VPDT  +
Sbjct: 674 MEKKGIQKTPGCSLVELRNEVHTFYSGSTNHPQSKRIYAYLETLGDEMKAAGYVPDTNSI 733

Query: 605 LLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYN 664
               ED KE+   L +HSERLAIAFGL+N +  + I I KNLRVC DCH  TK +S +  
Sbjct: 734 HDVEEDVKEQ--LLSSHSERLAIAFGLLNTRHGTAIHIRKNLRVCGDCHEATKYISLVTG 791

Query: 665 REIIVRDNSRFHHFKNGSCSCKDFW 689
           REIIVRD  RFHHFKNG CSC D+W
Sbjct: 792 REIIVRDLRRFHHFKNGICSCGDYW 816



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 132/541 (24%), Positives = 243/541 (44%), Gaps = 77/541 (14%)

Query: 27  ILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPS 86
           +L+  ++ KE  Q+  L +K          ++L+SL+     N++  A  +F+ + +H  
Sbjct: 50  LLELCTSLKELHQILPLIIKNGFYNEHLFQTKLISLFCK--FNSITEAARVFEPV-EHKL 106

Query: 87  LVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHG 146
            VLY+ ++K Y  N    +A+  +  +    ++P  +    +++ +     ++ G++IHG
Sbjct: 107 DVLYHTMLKGYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGREIHG 166

Query: 147 LVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKG---- 202
           +V   GF  + F ++++V++YAK  +I+   ++F+ M  +DLVSWN ++ GY + G    
Sbjct: 167 MVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARR 226

Query: 203 --EVEVAMKLFDEMPD----------------------------RDLFSW-----TCLVD 227
             +V + M+   + PD                            R  F +     T ++D
Sbjct: 227 AVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLD 286

Query: 228 GFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSM 287
            + KCG V  AR +F  M +RN+VSWN MI+GY +                         
Sbjct: 287 TYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQ------------------------- 321

Query: 288 IAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGF 347
                 NG   EA      ML   V P + +++ AL A A L  L +GR++H  + +   
Sbjct: 322 ------NGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERGRYVHRLLDEKKI 375

Query: 348 VVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNK 407
             D  +   LI MYSKC  ++ A +VF  +  K V  W AMI+G   +G   +AL+LF +
Sbjct: 376 GFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCE 435

Query: 408 MCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTG 467
           M    +KP + T + V+ A +   +    +    + I    ++  +     L+D   + G
Sbjct: 436 MQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTL-MDKNVFVCTALIDTHAKCG 494

Query: 468 YLEEAKSTIESMPMRPNFVIWMSLLS--GARNHGNKDIGEYAANNLIKVAPDTIGCYVVL 525
            ++ A+   + M  R + + W +++   G   HG + +  +       V P+ I    V+
Sbjct: 495 AIQTARKLFDLMQER-HVITWNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVI 553

Query: 526 S 526
           +
Sbjct: 554 A 554


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 260/670 (38%), Positives = 392/670 (58%), Gaps = 28/670 (4%)

Query: 38   QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVL--YNLLIK 95
            +Q+HAL +K++      +S+ L+++Y    +  ++ A   F   +  P L L  +N +I 
Sbjct: 914  EQIHALVIKSSFAPVVPVSNSLMNMYSKAGV--VYAAEKTF---INSPELDLISWNTMIS 968

Query: 96   CYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKE----GKQIHGLVFKL 151
             Y  N    EA+  F DLL   L PD FTL  V++ A   G   E    G Q+H    K 
Sbjct: 969  SYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLR-ACSTGDEGEYFTLGSQVHVYAIKC 1027

Query: 152  GFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLF 211
            G   D FV ++L+ +Y+K G++D    +     D DL SWN ++ GY+K  +   A++ F
Sbjct: 1028 GIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHF 1087

Query: 212  DEM-----PDRDLFSWT------CLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGY 260
              M     P  ++   T      CL++   K GK   A  I     N   VS + +++ Y
Sbjct: 1088 SLMHEMGIPIDEITLATAIKASGCLIN--LKQGKQIQAYAIKLGFNNDLWVS-SGVLDMY 1144

Query: 261  MKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLV 320
            +K GD+ +A ELF ++   D + W +MI+GY  NG    AL +   M +  V P++ T  
Sbjct: 1145 IKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFA 1204

Query: 321  SALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKK 380
            + + A + L  L +G+ +H+ +VK  + +D  +GT L+ MY KCGS++ A  VFR +  +
Sbjct: 1205 TLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVR 1264

Query: 381  KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYF 440
            KV  W AM++GL  HG   +AL+LF  M   G++P  +TFIGVL+ACSH+GL ++  +YF
Sbjct: 1265 KVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYF 1324

Query: 441  NMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGN 500
            + M   YGI P IEHY CLVD L R G ++EA++ I SMP + +  ++ +LL   R  G+
Sbjct: 1325 DAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGD 1384

Query: 501  KDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIE 560
             +  +  A+ L+ + P     YV+LSNIYAA+ QWD V++ R MMK +  +KDPG S I+
Sbjct: 1385 AETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWID 1444

Query: 561  HRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAG-HVPDTTQVLLCIEDQKEKEAELE 619
             +  +H FVV D+SHPQ   I+ K+ ++  +++  G +VPDT   LL +E++ EKE  L 
Sbjct: 1445 VKNKVHLFVVDDRSHPQASLIYEKIEDLMKRIREEGSYVPDTDFTLLDVEEE-EKERALY 1503

Query: 620  NHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFK 679
             HSE+LAIAFGLI+    + IR++KNLRVC DCHS  K +S +  REI++RD +RFHHF+
Sbjct: 1504 YHSEKLAIAFGLISTPPSATIRVIKNLRVCGDCHSAIKCISKLTQREIVLRDANRFHHFR 1563

Query: 680  NGSCSCKDFW 689
            NG+CSC D+W
Sbjct: 1564 NGTCSCGDYW 1573



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 126/442 (28%), Positives = 209/442 (47%), Gaps = 31/442 (7%)

Query: 106  ALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVS 165
            A+  F  LL   +  D+ TL  ++  A     +  G+QIH LV K  F     V +SL++
Sbjct: 878  AIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMN 937

Query: 166  MYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKG-EVEVAMKLFDEMPD---RDLFS 221
            MY+K G +    + F    + DL+SWN +I  Y +   E+E      D + D    D F+
Sbjct: 938  MYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFT 997

Query: 222  WTCLVDGFSKCGKVEI--------AREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELF 273
               ++   S   + E            I   + N + VS  A+I+ Y K G +D A  L 
Sbjct: 998  LASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVS-TALIDLYSKGGKMDEAEFLL 1056

Query: 274  DDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLN 333
                  DL +WN+++ GY  + +  +ALE    M    +  ++ TL +A+ A   L  L 
Sbjct: 1057 HGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLK 1116

Query: 334  KGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLG 393
            +G+ + +Y +K GF  D  + + ++ MY KCG + +AL +F  IS+     WT MI G  
Sbjct: 1117 QGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYI 1176

Query: 394  MHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR-YFNMMINDYGIEPT 452
             +G    AL +++ M   G++P   TF  ++ A S    +  G++ + N++  DY    +
Sbjct: 1177 ENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDY----S 1232

Query: 453  IEHY--GCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANN 510
            ++H+    LVD+ C+ G +++A      M +R   V W ++L G   HG+ D     A N
Sbjct: 1233 LDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVR-KVVFWNAMLLGLAQHGHVD----EALN 1287

Query: 511  LIK------VAPDTIGCYVVLS 526
            L +      + PD +    VLS
Sbjct: 1288 LFRTMQSNGIQPDKVTFIGVLS 1309



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 110/452 (24%), Positives = 199/452 (44%), Gaps = 45/452 (9%)

Query: 38   QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
            ++ HA  V +  +    +++ L+++Y      +L  AR +FD+      LV +N ++  Y
Sbjct: 631  KRAHARIVTSGDLPDRYLTNNLITMY--SKCGSLCSARQVFDKSSDR-DLVTWNSILAAY 687

Query: 98   V-FNQRSHE----ALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLG 152
              F   S+E       LF  L +        TL  ++K     G ++  + +HG   K+G
Sbjct: 688  AQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIG 747

Query: 153  FGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFD 212
            F  D FV  +LV++Y K+G +   R +FD M ++D V WN ++  YV+    + A++ F 
Sbjct: 748  FELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFS 807

Query: 213  EMPDRDLF----SWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDS 268
                   F    +  C++ G                      V+ +   N    A  V +
Sbjct: 808  AFHRSGFFPDFSNLHCVIGG----------------------VNSDVSNNRKRHAEQVKA 845

Query: 269  -ACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVA 327
             A ++F   +  ++  WN  +  +   G+ + A++  +T+L   +  +  TLV  LSA  
Sbjct: 846  YAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAV 905

Query: 328  GLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTA 387
            G   L+ G  +H+ ++K+ F     +   L+ MYSK G + +A   F    +  +  W  
Sbjct: 906  GADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNT 965

Query: 388  MIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNM--MIN 445
            MI     + +  +A+  F  + R G+KP   T   VL ACS      D   YF +   ++
Sbjct: 966  MISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACS----TGDEGEYFTLGSQVH 1021

Query: 446  DYGIEPTIEH----YGCLVDILCRTGYLEEAK 473
             Y I+  I +       L+D+  + G ++EA+
Sbjct: 1022 VYAIKCGIINDSFVSTALIDLYSKGGKMDEAE 1053



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 81/174 (46%), Gaps = 8/174 (4%)

Query: 324 SAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVG 383
           SA+A +A L  G+  H+ IV +G + D  L   LI MYSKCGS+ SA  VF   S + + 
Sbjct: 620 SAIA-MADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLV 678

Query: 384 HWTAMIVGLGMHGMAT-----QALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR 438
            W +++        ++     +   LF  +   G   T +T   +L  C  +G V     
Sbjct: 679 TWNSILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSET 738

Query: 439 YFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLL 492
                +   G E  +   G LV+I C+ G + +A+   + MP R + V+W  +L
Sbjct: 739 VHGYAVK-IGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPER-DAVLWNVML 790


>gi|147854977|emb|CAN80267.1| hypothetical protein VITISV_027683 [Vitis vinifera]
          Length = 539

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 229/476 (48%), Positives = 319/476 (67%), Gaps = 2/476 (0%)

Query: 216 DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDD 275
           + +LF    ++  ++  G V+ AR +F    +++L SWN MI GY+ +G++  A E+FD+
Sbjct: 64  ESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDE 123

Query: 276 MEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKG 335
           M  RD+++W ++IAGY   G F EAL+L   ML     PN+ TL SAL+A A L  L++G
Sbjct: 124 MSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQG 183

Query: 336 RWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS--KKKVGHWTAMIVGLG 393
           RW+H YI K+   ++  L   L+ MY+KCG I+ A  VF      K KV  W AMI G  
Sbjct: 184 RWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYA 243

Query: 394 MHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTI 453
           MHG + +A+DLF +M    + P  +TF+ +LNACSH  LV +GR YF  M + YGIEP I
Sbjct: 244 MHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEI 303

Query: 454 EHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIK 513
           EHYGC+VD+L R+G L+EA+ T+ +MPM P+  IW +LL   R H + + G+     + +
Sbjct: 304 EHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGKIIKE 363

Query: 514 VAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDK 573
           +  D IGC+V+L+N+Y+A+GQWD+   VR+ ++  G +K PG SSIE  GV H+F+VGD+
Sbjct: 364 LDSDHIGCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSIELNGVFHQFLVGDR 423

Query: 574 SHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLIN 633
           SHPQT +++  L EM  KLK AG+VP+  +VLL I+D+++KE  L  HSE+LAIAFGLIN
Sbjct: 424 SHPQTKQLYLFLDEMTTKLKNAGYVPEFGEVLLDIDDEEDKETALSKHSEKLAIAFGLIN 483

Query: 634 VKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
               + IRIVKNLRVC DCH  TK +S +Y REIIVRD  R+HHFK+G CSCKD+W
Sbjct: 484 TPPGTAIRIVKNLRVCADCHEATKFISKVYKREIIVRDRIRYHHFKDGFCSCKDYW 539



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 121/431 (28%), Positives = 205/431 (47%), Gaps = 88/431 (20%)

Query: 93  LIKCY-VFNQRSHEALTLFCDLLD-RFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFK 150
           +IK + V    SH ++ +F  ++     LP+ +T   V K       + EG+QI     K
Sbjct: 1   MIKAHAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAIK 60

Query: 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
           +G   + FV ++++ MYA +G +D  RRVFD   D+DL SWN +I GYV  GE+  A ++
Sbjct: 61  IGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEM 120

Query: 211 FDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM------PNR-----------NLVSW 253
           FDEM +RD+ SWT ++ G+ + G  + A ++F+ M      PN            NLV+ 
Sbjct: 121 FDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVAL 180

Query: 254 N----------------------AMINGYMKAGDVDSACELFDD---MEIRDLITWNSMI 288
           +                      ++++ Y K G++D A ++F D   ++++ +  WN+MI
Sbjct: 181 DQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLK-VWPWNAMI 239

Query: 289 AGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFV 348
            GY ++G+  EA++L E M +  V PN  T V+ L+A +           H  +V+ G  
Sbjct: 240 GGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACS-----------HGKLVEEG-- 286

Query: 349 VDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALD-LFNK 407
                     + Y K  S+ S+  +     + ++ H+  M+  LG  G+  +A + +FN 
Sbjct: 287 ----------RGYFK--SMASSYGI-----EPEIEHYGCMVDLLGRSGLLKEAEETVFN- 328

Query: 408 MCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGC---LVDILC 464
              M M P A  +  +L AC     +  G+R     I     E   +H GC   L ++  
Sbjct: 329 ---MPMAPDATIWGALLGACRIHKDIERGQR-----IGKIIKELDSDHIGCHVLLANLYS 380

Query: 465 RTGYLEEAKST 475
            +G  +EAK+ 
Sbjct: 381 ASGQWDEAKAV 391



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 110/231 (47%), Gaps = 17/231 (7%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           A+ +FD + +   +V +  +I  YV      EAL LF ++L     P+ FTL   +   A
Sbjct: 117 AKEMFDEMSER-DVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACA 175

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVF-DAMDDKDLV-SW 191
            L A+ +G+ IH  + K     ++ +L+SL+ MYAK GEID   +VF D    K  V  W
Sbjct: 176 NLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPW 235

Query: 192 NCLIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKCGKVEIAREIFYRM 245
           N +I GY   G+ + A+ LF++M      P++  F    L++  S    VE  R  F  M
Sbjct: 236 NAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTF--VALLNACSHGKLVEEGRGYFKSM 293

Query: 246 PNR-----NLVSWNAMINGYMKAGDVDSACELFDDMEIR-DLITWNSMIAG 290
            +       +  +  M++   ++G +  A E   +M +  D   W +++  
Sbjct: 294 ASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGA 344


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 260/670 (38%), Positives = 392/670 (58%), Gaps = 28/670 (4%)

Query: 38   QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVL--YNLLIK 95
            +Q+HAL +K++      +S+ L+++Y    +  ++ A   F   +  P L L  +N +I 
Sbjct: 914  EQIHALVIKSSFAPVVPVSNSLMNMYSKAGV--VYAAEKTF---INSPELDLISWNTMIS 968

Query: 96   CYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKE----GKQIHGLVFKL 151
             Y  N    EA+  F DLL   L PD FTL  V++ A   G   E    G Q+H    K 
Sbjct: 969  SYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLR-ACSTGDEGEYFTLGSQVHVYAIKC 1027

Query: 152  GFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLF 211
            G   D FV ++L+ +Y+K G++D    +     D DL SWN ++ GY+K  +   A++ F
Sbjct: 1028 GIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHF 1087

Query: 212  DEM-----PDRDLFSWT------CLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGY 260
              M     P  ++   T      CL++   K GK   A  I     N   VS + +++ Y
Sbjct: 1088 SLMHEMGIPIDEITLATAIKASGCLIN--LKQGKQIQAYAIKLGFNNDLWVS-SGVLDMY 1144

Query: 261  MKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLV 320
            +K GD+ +A ELF ++   D + W +MI+GY  NG    AL +   M +  V P++ T  
Sbjct: 1145 IKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFA 1204

Query: 321  SALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKK 380
            + + A + L  L +G+ +H+ +VK  + +D  +GT L+ MY KCGS++ A  VFR +  +
Sbjct: 1205 TLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVR 1264

Query: 381  KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYF 440
            KV  W AM++GL  HG   +AL+LF  M   G++P  +TFIGVL+ACSH+GL ++  +YF
Sbjct: 1265 KVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYF 1324

Query: 441  NMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGN 500
            + M   YGI P IEHY CLVD L R G ++EA++ I SMP + +  ++ +LL   R  G+
Sbjct: 1325 DAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGD 1384

Query: 501  KDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIE 560
             +  +  A+ L+ + P     YV+LSNIYAA+ QWD V++ R MMK +  +KDPG S I+
Sbjct: 1385 AETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWID 1444

Query: 561  HRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAG-HVPDTTQVLLCIEDQKEKEAELE 619
             +  +H FVV D+SHPQ   I+ K+ ++  +++  G +VPDT   LL +E++ EKE  L 
Sbjct: 1445 VKNKVHLFVVDDRSHPQASLIYEKIEDLMKRIREEGSYVPDTDFTLLDVEEE-EKERALY 1503

Query: 620  NHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFK 679
             HSE+LAIAFGLI+    + IR++KNLRVC DCHS  K +S +  REI++RD +RFHHF+
Sbjct: 1504 YHSEKLAIAFGLISTPPSATIRVIKNLRVCGDCHSAIKCISKLTQREIVLRDANRFHHFR 1563

Query: 680  NGSCSCKDFW 689
            NG+CSC D+W
Sbjct: 1564 NGTCSCGDYW 1573



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 126/442 (28%), Positives = 209/442 (47%), Gaps = 31/442 (7%)

Query: 106  ALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVS 165
            A+  F  LL   +  D+ TL  ++  A     +  G+QIH LV K  F     V +SL++
Sbjct: 878  AIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMN 937

Query: 166  MYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKG-EVEVAMKLFDEMPD---RDLFS 221
            MY+K G +    + F    + DL+SWN +I  Y +   E+E      D + D    D F+
Sbjct: 938  MYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFT 997

Query: 222  WTCLVDGFSKCGKVEI--------AREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELF 273
               ++   S   + E            I   + N + VS  A+I+ Y K G +D A  L 
Sbjct: 998  LASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVS-TALIDLYSKGGKMDEAEFLL 1056

Query: 274  DDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLN 333
                  DL +WN+++ GY  + +  +ALE    M    +  ++ TL +A+ A   L  L 
Sbjct: 1057 HGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLK 1116

Query: 334  KGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLG 393
            +G+ + +Y +K GF  D  + + ++ MY KCG + +AL +F  IS+     WT MI G  
Sbjct: 1117 QGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYI 1176

Query: 394  MHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR-YFNMMINDYGIEPT 452
             +G    AL +++ M   G++P   TF  ++ A S    +  G++ + N++  DY    +
Sbjct: 1177 ENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDY----S 1232

Query: 453  IEHY--GCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANN 510
            ++H+    LVD+ C+ G +++A      M +R   V W ++L G   HG+ D     A N
Sbjct: 1233 LDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVR-KVVFWNAMLLGLAQHGHVD----EALN 1287

Query: 511  LIK------VAPDTIGCYVVLS 526
            L +      + PD +    VLS
Sbjct: 1288 LFRTMQSNGIQPDKVTFIGVLS 1309



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 110/452 (24%), Positives = 199/452 (44%), Gaps = 45/452 (9%)

Query: 38   QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
            ++ HA  V +  +    +++ L+++Y      +L  AR +FD+      LV +N ++  Y
Sbjct: 631  KRAHARIVTSGDLPDRYLTNNLITMY--SKCGSLCSARQVFDKSSDR-DLVTWNSILAAY 687

Query: 98   V-FNQRSHE----ALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLG 152
              F   S+E       LF  L +        TL  ++K     G ++  + +HG   K+G
Sbjct: 688  AQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIG 747

Query: 153  FGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFD 212
            F  D FV  +LV++Y K+G +   R +FD M ++D V WN ++  YV+    + A++ F 
Sbjct: 748  FELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFS 807

Query: 213  EMPDR----DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDS 268
                     D  +  C++ G                      V+ +   N    A  V +
Sbjct: 808  AFHRSGFXPDFSNLHCVIGG----------------------VNSDVSNNRKRHAEQVKA 845

Query: 269  -ACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVA 327
             A ++F   +  ++  WN  +  +   G+ + A++  +T+L   +  +  TLV  LSA  
Sbjct: 846  YAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAV 905

Query: 328  GLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTA 387
            G   L+ G  +H+ ++K+ F     +   L+ MYSK G + +A   F    +  +  W  
Sbjct: 906  GADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNT 965

Query: 388  MIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNM--MIN 445
            MI     + +  +A+  F  + R G+KP   T   VL ACS      D   YF +   ++
Sbjct: 966  MISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACS----TGDEGEYFTLGSQVH 1021

Query: 446  DYGIEPTIEH----YGCLVDILCRTGYLEEAK 473
             Y I+  I +       L+D+  + G ++EA+
Sbjct: 1022 VYAIKCGIINDSFVSTALIDLYSKGGKMDEAE 1053



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 81/174 (46%), Gaps = 8/174 (4%)

Query: 324 SAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVG 383
           SA+A +A L  G+  H+ IV +G + D  L   LI MYSKCGS+ SA  VF   S + + 
Sbjct: 620 SAIA-MADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLV 678

Query: 384 HWTAMIVGLGMHGMAT-----QALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR 438
            W +++        ++     +   LF  +   G   T +T   +L  C  +G V     
Sbjct: 679 TWNSILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSET 738

Query: 439 YFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLL 492
                +   G E  +   G LV+I C+ G + +A+   + MP R + V+W  +L
Sbjct: 739 VHGYAVK-IGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPER-DAVLWNVML 790


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 249/625 (39%), Positives = 369/625 (59%), Gaps = 13/625 (2%)

Query: 74   ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
            AR +FD +     ++ +N ++     N   HEA T+F  +    L+PD+ T   ++    
Sbjct: 477  ARLVFDGMCDR-DVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHG 535

Query: 134  RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
               A++   ++H    + G   D  V S+ + MY + G ID  R +FD +  + + +WN 
Sbjct: 536  STDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNA 595

Query: 194  LIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPN 247
            +I G  ++     A+ LF +M      PD   F    ++        +E  +E+     +
Sbjct: 596  MIGGAAQQRCGREALSLFLQMQREGFIPDATTF--INILSANVDEEALEWVKEVHSHATD 653

Query: 248  RNLVSW---NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELL 304
              LV     NA+++ Y K G+V  A ++FDDM  R++ TW  MI G   +G   +A    
Sbjct: 654  AGLVDLRVGNALVHTYSKCGNVKYAKQVFDDMVERNVTTWTMMIGGLAQHGCGHDAFSHF 713

Query: 305  ETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKC 364
              ML   ++P+  T VS LSA A    L   + +H++ V  G V D  +G  L+ MY+KC
Sbjct: 714  LQMLREGIVPDATTYVSILSACASTGALEWVKEVHNHAVSAGLVSDLRVGNALVHMYAKC 773

Query: 365  GSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVL 424
            GSI+ A +VF  + ++ V  WT MI GL  HG   +ALD F KM   G KP   +++ VL
Sbjct: 774  GSIDDARSVFDDMVERDVFSWTVMIGGLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVL 833

Query: 425  NACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPN 484
             ACSHAGLV++GRR F  M  DYGIEPT+EHY C+VD+L R G LEEA+  I +MP+ P+
Sbjct: 834  TACSHAGLVDEGRRQFLSMTQDYGIEPTMEHYTCMVDLLGRAGLLEEAELFILNMPIEPD 893

Query: 485  FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREM 544
               W +LL     +GN ++ E+AA   +K+ P +   YV+LSNIYAA G+W++   VR M
Sbjct: 894  DAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGKWEQKLLVRSM 953

Query: 545  MKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQV 604
            M+++G RK+PG S IE    +H FVVGD SHP++ EI+++L+++  +LKA G+VPD T++
Sbjct: 954  MQRKGIRKEPGRSWIEVDNRIHSFVVGDTSHPESKEIYAQLNDLIERLKAKGYVPD-TRL 1012

Query: 605  LLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYN 664
            +L   DQ+ KE  L +HSE+LAI +GL++ +S+ PIR+ KNLRVC+DCH+ TK +S I  
Sbjct: 1013 VLRNTDQEHKEQALCSHSEKLAIVYGLMHTQSKDPIRVYKNLRVCSDCHTATKFISKITG 1072

Query: 665  REIIVRDNSRFHHFKNGSCSCKDFW 689
            REI+ RD  RFHHFK+G CSC D+W
Sbjct: 1073 REIVARDAKRFHHFKDGVCSCGDYW 1097



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 137/521 (26%), Positives = 254/521 (48%), Gaps = 32/521 (6%)

Query: 37  TQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKC 96
            +Q+H   +K+ +  +  ++++LL +Y+      L  AR +FD++L+  ++ ++  +I  
Sbjct: 137 AKQVHVCIIKSGMEQNLYVANKLLRVYI--RCGRLQCARQVFDKLLK-KNIYIWTTMIGG 193

Query: 97  YVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFD 156
           Y     + +A+ ++  +      P+  T   ++K       +K GK+IH  + + GF  D
Sbjct: 194 YAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSD 253

Query: 157 KFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD 216
             V ++LV+MY K G I+  + +FD M +++++SW  +I G    G  + A  LF +M  
Sbjct: 254 VRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQR 313

Query: 217 RDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLV----SWNAMINGYMKAGDVDS 268
                  +++  +++  +  G +E  +E+     N  L       NA+++ Y K+G +D 
Sbjct: 314 EGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDD 373

Query: 269 ACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSAL--SAV 326
           A  +FD M  RD+ +W  MI G   +GR  EA  L   M     LPN  T +S L  SA+
Sbjct: 374 ARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAI 433

Query: 327 AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWT 386
           A  + L   + +H +  + GF+ D  +G  LI MY+KCGSI+ A  VF  +  + V  W 
Sbjct: 434 ASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWN 493

Query: 387 AMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGL-----VNDGRRYF- 440
           AM+ GL  +G   +A  +F +M + G+ P + T++ +LN  +H        VN+  ++  
Sbjct: 494 AMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLN--THGSTDALEWVNEVHKHAV 551

Query: 441 -NMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNH- 498
              +I+D+ +     H      +  R G +++A+   + + +R +   W +++ GA    
Sbjct: 552 ETGLISDFRVGSAFIH------MYIRCGSIDDARLLFDKLSVR-HVTTWNAMIGGAAQQR 604

Query: 499 -GNKDIGEYAANNLIKVAPDTIGCYVVLS-NIYAAAGQWDK 537
            G + +  +         PD      +LS N+   A +W K
Sbjct: 605 CGREALSLFLQMQREGFIPDATTFINILSANVDEEALEWVK 645



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 146/550 (26%), Positives = 246/550 (44%), Gaps = 57/550 (10%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           K  +++HA  +++       + + L+++YV     ++  A+ IFD++++  +++ + ++I
Sbjct: 236 KWGKKIHAHIIQSGFQSDVRVETALVNMYVK--CGSIEDAQLIFDKMVER-NVISWTVMI 292

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
                  R  EA  LF  +     +P+++T   ++   A  GA++  K++H      G  
Sbjct: 293 GGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLA 352

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
            D  V ++LV MYAK G ID  R VFD M ++D+ SW  +I G  + G  + A  LF +M
Sbjct: 353 LDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQM 412

Query: 215 ------PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS----WNAMINGYMKAG 264
                 P+   +         +    +E  + +         +S     NA+I+ Y K G
Sbjct: 413 QRNGCLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCG 472

Query: 265 DVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS 324
            +D A  +FD M  RD+I+WN+M+ G   NG   EA  +   M    ++P+  T +S L+
Sbjct: 473 SIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLN 532

Query: 325 AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGH 384
                  L     +H + V+ G + D  +G+  I MY +CGSI+ A  +F  +S + V  
Sbjct: 533 THGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTT 592

Query: 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNA----------------CS 428
           W AMI G        +AL LF +M R G  P A TFI +L+A                 +
Sbjct: 593 WNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILSANVDEEALEWVKEVHSHAT 652

Query: 429 HAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIW 488
            AGLV+   R  N +++ Y                 + G ++ AK   + M  R N   W
Sbjct: 653 DAGLVD--LRVGNALVHTYS----------------KCGNVKYAKQVFDDMVER-NVTTW 693

Query: 489 MSLLSGARNHGNKDIGEYAANNLIK-----VAPDTIGCYVVLSNIYAAAGQWDKVSEVRE 543
             ++ G   HG    G  A ++ ++     + PD    YV + +  A+ G  + V EV  
Sbjct: 694 TMMIGGLAQHG---CGHDAFSHFLQMLREGIVPDAT-TYVSILSACASTGALEWVKEVHN 749

Query: 544 MMKKRGFRKD 553
                G   D
Sbjct: 750 HAVSAGLVSD 759



 Score =  165 bits (417), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 122/447 (27%), Positives = 215/447 (48%), Gaps = 19/447 (4%)

Query: 121 DNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVF 180
           D+F+   +++   +   I   KQ+H  + K G   + +V + L+ +Y + G +   R+VF
Sbjct: 117 DSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCARQVF 176

Query: 181 DAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDRDLF-----SWTCLVDGF 229
           D +  K++  W  +I GY + G  E AM+++D+M      P+   +     +  C V+  
Sbjct: 177 DKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVN-- 234

Query: 230 SKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIA 289
            K GK +I   I       ++    A++N Y+K G ++ A  +FD M  R++I+W  MI 
Sbjct: 235 LKWGK-KIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIG 293

Query: 290 GYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVV 349
           G    GR  EA  L   M     +PN  T VS L+A A    L   + +HS+ V  G  +
Sbjct: 294 GLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLAL 353

Query: 350 DGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMC 409
           D  +G  L+ MY+K GSI+ A  VF  ++++ +  WT MI GL  HG   +A  LF +M 
Sbjct: 354 DLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQ 413

Query: 410 RMGMKPTAITFIGVLNACSHAGLVN-DGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGY 468
           R G  P   T++ +LNA + A     +  +  +    + G    +     L+ +  + G 
Sbjct: 414 RNGCLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGS 473

Query: 469 LEEAKSTIESMPMRPNFVIWMSLLSG-ARNH-GNKDIGEYAANNLIKVAPDTIGCYVVLS 526
           +++A+   + M  R + + W +++ G A+N  G++    +       + PD+   Y+ L 
Sbjct: 474 IDDARLVFDGMCDR-DVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDST-TYLSLL 531

Query: 527 NIYAAAGQWDKVSEVREMMKKRGFRKD 553
           N + +    + V+EV +   + G   D
Sbjct: 532 NTHGSTDALEWVNEVHKHAVETGLISD 558


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 258/706 (36%), Positives = 381/706 (53%), Gaps = 88/706 (12%)

Query: 70  NLHYARSIF-DRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCV 128
           +L  +R IF D  L     V YN +I  Y  N   H A+ LFCD+      PDN+T   V
Sbjct: 94  DLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIELFCDMQRDNFRPDNYTFTSV 153

Query: 129 IKGAARLGAIKEG--KQIHGLVFKLGFGFDKFVLSSLVSMYAKFGE---------IDLGR 177
           + GA  L A KE   +Q+H  V K G GF   VL++L+S Y K            +   R
Sbjct: 154 L-GALALVAEKEKHCQQLHCAVVKSGTGFVTSVLNALISSYVKCAASPSAQSSSLMAEAR 212

Query: 178 RVFDAMDDKDL-------------------------------VSWNCLIDGYVKKGEVEV 206
           ++FD M ++D                                V+WN +I GY  +G    
Sbjct: 213 KLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLE 272

Query: 207 AMKLFDEM-------------------------------------------PDRDLFSWT 223
           A ++F +M                                           PD  +    
Sbjct: 273 AFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNN 332

Query: 224 CLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLIT 283
            L+  + KCGKV+IA+EIF +MP R+LVSWN +++GY+    +D A   F++M  +++++
Sbjct: 333 ALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNILS 392

Query: 284 WNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIV 343
           W  MI+G    G   EAL+    M +    P D     A+ + + L  L  GR +H+ +V
Sbjct: 393 WIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIISCSVLGSLKHGRQLHAQVV 452

Query: 344 KNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALD 403
           + G+      G  LI MY++CG +++A  +F  +       W AMI  LG HG  TQA++
Sbjct: 453 RYGYESSLSAGNALITMYARCGVVDAAHCLFINMPCVDAISWNAMIAALGQHGQGTQAIE 512

Query: 404 LFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDIL 463
           LF +M + G+ P  I+F+ V++ACSHAGLV +GR+YF+ M N YG+ P  EHY  ++D+L
Sbjct: 513 LFEEMLKEGILPDRISFLTVISACSHAGLVKEGRKYFDSMHNVYGVNPDEEHYARIIDLL 572

Query: 464 CRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYV 523
           CR G   EAK  +ESMP  P   IW +LL+G R HGN D+G  AA  L ++ P   G YV
Sbjct: 573 CRAGKFSEAKEVMESMPFEPGAPIWEALLAGCRIHGNIDLGIEAAERLFELKPQHDGTYV 632

Query: 524 VLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHS 583
           +LSN+YA AGQW+ +++VR++M+ RG +K+PG S IE    +H F+VGD +HP+  +I++
Sbjct: 633 LLSNMYAVAGQWNDMAKVRKLMRDRGVKKEPGCSWIEVENKVHSFLVGDANHPEVRQIYN 692

Query: 584 KLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIV 643
            L ++  +++  G+VPDT  VL  +E    KE EL  HSE+LA+A+G + +   + +R+ 
Sbjct: 693 YLEQLVLEMRKIGYVPDTKCVLHDVESDL-KEHELSTHSEKLAVAYGFMKLPHGATVRVF 751

Query: 644 KNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           KNLR+C DCH+  K +S +  REI+VRD  RFHHF++G CSC D+W
Sbjct: 752 KNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 797



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 109/505 (21%), Positives = 192/505 (38%), Gaps = 121/505 (23%)

Query: 141 GKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVK 200
            + +H  +   GF     +L+ L+ +Y+K  +++  R +FD +   D+V+   LI  Y  
Sbjct: 32  ARPVHAHMIASGFQPRGHILNRLIDIYSKSSKLNYARYLFDEIPQPDIVARTTLIAAYSA 91

Query: 201 KGEVEVAMKLFDEMP--DRDLFSWTCLVDGFSKCGKVEIAREIF-------YRMPNRNLV 251
            G+++++ K+F + P   RD   +  ++  +S       A E+F       +R  N    
Sbjct: 92  AGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIELFCDMQRDNFRPDNYTFT 151

Query: 252 S---------------------------------WNAMINGYMKAGD---------VDSA 269
           S                                  NA+I+ Y+K            +  A
Sbjct: 152 SVLGALALVAEKEKHCQQLHCAVVKSGTGFVTSVLNALISSYVKCAASPSAQSSSLMAEA 211

Query: 270 CELFDDMEIRDLITW-------------------------------NSMIAGYELNGRFM 298
            +LFD+M  RD ++W                               N+MI+GY   G ++
Sbjct: 212 RKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYL 271

Query: 299 EALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKN----GFVVDGVLG 354
           EA E+   M++  +  ++ T  S +S  A       G+ MH+Y +K        V   + 
Sbjct: 272 EAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVN 331

Query: 355 TLLIQMYSKCGSI-------------------------------ESALTVFRAISKKKVG 383
             LI  Y KCG +                               + A + F  + +K + 
Sbjct: 332 NALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNIL 391

Query: 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMM 443
            W  MI GL   G A +AL  FN+M   G +P    F G + +CS  G +  GR+    +
Sbjct: 392 SWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIISCSVLGSLKHGRQLHAQV 451

Query: 444 INDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDI 503
           +  YG E ++     L+ +  R G ++ A     +MP   + + W ++++    HG    
Sbjct: 452 VR-YGYESSLSAGNALITMYARCGVVDAAHCLFINMPC-VDAISWNAMIAALGQHGQGTQ 509

Query: 504 GEYAANNLIK--VAPDTIGCYVVLS 526
                  ++K  + PD I    V+S
Sbjct: 510 AIELFEEMLKEGILPDRISFLTVIS 534



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 158/374 (42%), Gaps = 52/374 (13%)

Query: 225 LVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDD--MEIRDLI 282
           L+D +SK  K+  AR +F  +P  ++V+   +I  Y  AGD+  + ++F D  + +RD +
Sbjct: 54  LIDIYSKSSKLNYARYLFDEIPQPDIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMRDSV 113

Query: 283 TWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKG-RWMHSY 341
            +N+MI  Y  N     A+EL   M   +  P++ T  S L A+A +A   K  + +H  
Sbjct: 114 FYNAMITAYSHNHDGHAAIELFCDMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLHCA 173

Query: 342 IVKN--GFVV--------------------------------------DGVLGTLLIQMY 361
           +VK+  GFV                                       D +  T +I  Y
Sbjct: 174 VVKSGTGFVTSVLNALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGY 233

Query: 362 SKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFI 421
            K   +++A       SKK    W AMI G    G+  +A ++F KM    ++    TF 
Sbjct: 234 VKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFT 293

Query: 422 GVLNACSHAGLVNDGRR---YFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIES 478
            V++ C++AG    G+    YF   + +   +  +     L+    + G ++ A+     
Sbjct: 294 SVISVCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNK 353

Query: 479 MPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPD-TIGCYVVLSNIYAAAGQWDK 537
           MP R + V W  +LSG  N    D     A +     P+  I  ++++ +  A  G  ++
Sbjct: 354 MPER-DLVSWNIILSGYVNVRCMD----EAKSFFNEMPEKNILSWIIMISGLAQIGFAEE 408

Query: 538 VSEVREMMKKRGFR 551
             +    MK +GF 
Sbjct: 409 ALKFFNRMKLQGFE 422


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 255/678 (37%), Positives = 400/678 (58%), Gaps = 13/678 (1%)

Query: 20  PSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFD 79
           P + + +++  S       Q++A  + T L Y   + ++L++   +  I  +  AR +FD
Sbjct: 74  PDKFYASLIDDSIHKTHLNQIYAKLLVTGLQYGGFLIAKLVNKASN--IGEVSCARKLFD 131

Query: 80  RILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIK 139
           +    P + L+N +++CY  +     A+ ++  +    + PD F+ PCV+K  + L A++
Sbjct: 132 K-FPDPDVFLWNAIVRCYSRHGFFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALE 190

Query: 140 EGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYV 199
            G+++HG +F+ GF  D FV + LV++YAK GEI     VF  + D+ +VSW  +I GY 
Sbjct: 191 MGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYA 250

Query: 200 KKGEVEVAMKLFDEMPDRDLFS-WTCLVD---GFSKCGKVEIAREIFYRMPNRNL-VSWN 254
           + G+   A+++F EM   ++   W  LV     ++    +E  + I   +    L   ++
Sbjct: 251 QNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFD 310

Query: 255 AMING---YMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGD 311
            +I+    Y K G V  A   F+ +E   LI WN+MI+GY  NG   EA+EL   M   +
Sbjct: 311 LLISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKN 370

Query: 312 VLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESAL 371
           + P+  T+ S+++A A +  L   RWM  YI  + F  D ++ T LI  Y+KCGS++ A 
Sbjct: 371 IRPDSITVTSSIAACAQIGSLELARWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMAR 430

Query: 372 TVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAG 431
            VF  I  K V  W+AM+VG G+HG   +++ LF+ M + G+ P  +TF+G+L AC ++G
Sbjct: 431 FVFDRIPDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTACKNSG 490

Query: 432 LVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSL 491
           LV +G   F+ M  DYGIEP  +HY C+VD+L R G+L+ A + + +MP+ P   +W +L
Sbjct: 491 LVEEGWDLFHRM-RDYGIEPRHQHYACVVDLLGRAGHLDRAYNFVMNMPIEPGVSVWGAL 549

Query: 492 LSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFR 551
           LS  + H +  +GEYAA  L  + P   G YV LSN+YA++  WD V++VR +M+++G  
Sbjct: 550 LSACKIHRHVTLGEYAAERLFSLDPYNTGHYVQLSNLYASSCLWDCVAKVRVLMREKGLT 609

Query: 552 KDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQ 611
           K  G S IE  G L  F  GDK+HP++ EI  ++ ++  +LK AG VP T  VL  + + 
Sbjct: 610 KHLGYSVIEINGKLQAFQAGDKTHPRSKEIFEEVEDLERRLKEAGFVPHTESVLHDL-NY 668

Query: 612 KEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRD 671
           +E E  L NHSERLAIA+GLI+    + +RI KNLR C++CH+  KL+S + +REI+VRD
Sbjct: 669 EETEETLCNHSERLAIAYGLISTPPGTTLRITKNLRACDNCHAAIKLISKLVSREIVVRD 728

Query: 672 NSRFHHFKNGSCSCKDFW 689
             RFHHFK+G+CSC D+W
Sbjct: 729 ACRFHHFKDGACSCGDYW 746


>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Glycine max]
          Length = 640

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 258/667 (38%), Positives = 375/667 (56%), Gaps = 36/667 (5%)

Query: 26  NILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHP 85
           ++L   S+ K T+Q+HA   KT L     +  +LL        + LHYA  +F     +P
Sbjct: 7   SLLSKCSSLKPTKQIHAQICKTGLHTDPLVFGKLLLHCAITISDALHYALRLFHH-FPNP 65

Query: 86  SLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLL-PDNFTLPCVIKGAARLGAIKEGKQI 144
              ++N LI+    +Q    +L  F  L  +  L PD+FT    +K  A    ++ G Q+
Sbjct: 66  DTFMHNTLIRSLSLSQTPLSSLHPFIQLRRQPTLSPDSFTFAFALKAVANSRHLRPGIQL 125

Query: 145 HGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEV 204
           H   F+ GF    FV ++L+SMYA+ G+    RRV                         
Sbjct: 126 HSQAFRHGFDAHIFVGTTLISMYAECGDSGSARRV------------------------- 160

Query: 205 EVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAG 264
                 FDEM + ++ +W  ++    +CG VE A+++F  MP RNL SWN M+ GY KAG
Sbjct: 161 ------FDEMSEPNVVTWNAVLTAAFRCGDVEGAQDVFGCMPVRNLTSWNGMLAGYAKAG 214

Query: 265 DVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS 324
           ++  A  +F +M +RD ++W++MI G+  NG F EA      +L  ++  N+ +L   LS
Sbjct: 215 ELGLARRVFYEMPLRDEVSWSTMIVGFAHNGCFDEAFGFFRELLREEIRTNEVSLTGVLS 274

Query: 325 AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS-KKKVG 383
           A A       G+ +H ++ K GF+  G +   LI  YSKCG++  A  VF+ +   + + 
Sbjct: 275 ACAQAGAFEFGKILHGFVEKAGFLYVGSVNNALIDTYSKCGNVAMARLVFQNMPVARSIV 334

Query: 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMM 443
            WT++I GL MHG   +A+ LF++M   G++P  ITFI +L ACSH+GLV +G   F+ M
Sbjct: 335 SWTSIIAGLAMHGCGEEAIQLFHEMEESGVRPDGITFISLLYACSHSGLVEEGCGLFSKM 394

Query: 444 INDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDI 503
            N YGIEP IEHYGC+VD+  R   L++A   I  MP+ PN +IW +LL     HGN ++
Sbjct: 395 KNLYGIEPAIEHYGCMVDLYGRAARLQKAYEFICEMPVSPNAIIWRTLLGACSIHGNIEM 454

Query: 504 GEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRG 563
            E     L ++ PD  G +V+LSN+YA AG+W  VS +R  M +   +K PG S IE   
Sbjct: 455 AELVKARLAEMDPDNSGDHVLLSNVYAVAGKWKDVSSIRRTMTEHSMKKTPGWSMIEIDK 514

Query: 564 VLHEFVVGDKSHPQTDEIHSKLSEMRNKLKA-AGHVPDTTQVLLCIEDQKEKEAELENHS 622
           V++ FV G+K +  T+E H KL E+  +L+  AG+ P    VL  IE++ EKE  +  HS
Sbjct: 515 VIYGFVAGEKPNEVTEEAHEKLREIMLRLRTEAGYAPQLRSVLHDIEEE-EKEDSVSKHS 573

Query: 623 ERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGS 682
           E+LA AFG+  +     +RIVKNLRVC DCH+V KL+S +Y  EIIVRD SRFH FK+G 
Sbjct: 574 EKLAAAFGIAKLPKGRILRIVKNLRVCGDCHTVMKLISKVYQVEIIVRDRSRFHSFKDGF 633

Query: 683 CSCKDFW 689
           CSC+D+W
Sbjct: 634 CSCRDYW 640


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 251/658 (38%), Positives = 393/658 (59%), Gaps = 21/658 (3%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINN--LHYARSIFDRILQHPSLVLYNL 92
           +E Q +     + N I  +G+        V  +INN  ++ AR +FDR+ +  ++V +  
Sbjct: 146 QEAQNMFDKMSERNTISWNGL--------VSGYINNGMINEAREVFDRMPER-NVVSWTA 196

Query: 93  LIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLG 152
           +++ YV      EA TLF  + ++ ++    +   ++ G  + G I E  ++    F + 
Sbjct: 197 MVRGYVKEGMISEAETLFWQMPEKNVV----SWTVMLGGLLQEGRIDEACRL----FDMM 248

Query: 153 FGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFD 212
              D    ++++  Y + G +   R +FD M  +++VSW  +I GYV+  +V++A KLF+
Sbjct: 249 PEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFE 308

Query: 213 EMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACEL 272
            MP+++  SWT ++ G++ CG+++ A E+F  MP +++V+ NAMI  + + G+V  A ++
Sbjct: 309 VMPEKNEVSWTAMLKGYTNCGRLDEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQV 368

Query: 273 FDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVL 332
           FD M  +D  TW++MI  YE  G  ++ALEL   M    + PN  +L+S LS  AGLA L
Sbjct: 369 FDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANL 428

Query: 333 NKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGL 392
           + GR +H+ +V++ F +D  + ++L+ MY KCG++  A  VF   + K V  W ++I G 
Sbjct: 429 DHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGY 488

Query: 393 GMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT 452
             HG+  +AL +F+ M   G+ P  +TF+GVL+ACS+ G V  G   FN M   Y +E  
Sbjct: 489 AQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQK 548

Query: 453 IEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLI 512
           IEHY C+VD+L R G L EA   IE MPM  + +IW +LL   R H   D+ E AA  L+
Sbjct: 549 IEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLL 608

Query: 513 KVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGD 572
            + P   G +++LSNIYA+ G+WD V+E+R  M+ R   K PG S I     +H+F  GD
Sbjct: 609 VLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVEKKVHKFTGGD 668

Query: 573 KS-HPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGL 631
            S HP+  EI+  L  +   L+ AG+ PD + VL  + D++EK   LE HSE+LA+A+GL
Sbjct: 669 SSGHPEHSEINRILEWLSGLLREAGYYPDQSFVLHDV-DEEEKVQSLEYHSEKLAVAYGL 727

Query: 632 INVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           + +    PIR++KNLRVC DCH+  KL++ +  REII+RD +RFHHFK+GSCSC+D+W
Sbjct: 728 LKIPIGMPIRVMKNLRVCGDCHAAIKLIAKVTGREIILRDANRFHHFKDGSCSCRDYW 785



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 117/403 (29%), Positives = 190/403 (47%), Gaps = 58/403 (14%)

Query: 153 FGFDKFVLS--SLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
           F    F++S  SL++ Y++ G+I+  R VFD M DK+++SWN ++ GY +    + A  +
Sbjct: 92  FYCSNFIISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNM 151

Query: 211 FDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMK-------- 262
           FD+M +R+  SW  LV G+   G +  ARE+F RMP RN+VSW AM+ GY+K        
Sbjct: 152 FDKMSERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAE 211

Query: 263 -----------------------AGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFME 299
                                   G +D AC LFD M  +D++T  +MI GY   GR +E
Sbjct: 212 TLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVE 271

Query: 300 ALELLE-----------TMLIGDVLPNDATLVSAL-------SAVAGLAVL----NKGRW 337
           A  L +           TM+ G V      +   L       + V+  A+L    N GR 
Sbjct: 272 ARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKGYTNCGRL 331

Query: 338 MHSYIVKNGFVVDGVLG-TLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHG 396
             +  + N   +  V+    +I  + + G +  A  VF  + +K  G W+AMI      G
Sbjct: 332 DEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKG 391

Query: 397 MATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHY 456
           +   AL+LF  M R G++P   + I VL+ C+    ++ GR     ++     +  +   
Sbjct: 392 LELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQ-FDLDVYVA 450

Query: 457 GCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
             L+ +  + G L +AK   +   ++ + V+W S+++G   HG
Sbjct: 451 SVLLSMYIKCGNLAKAKQVFDRFAVK-DVVMWNSIITGYAQHG 492


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 255/680 (37%), Positives = 395/680 (58%), Gaps = 27/680 (3%)

Query: 20  PSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFD 79
           P+ L+W            +++HA  V    +    I + L+S+YV     ++  AR +FD
Sbjct: 171 PAGLNWG-----------KEVHAQVVTAGFVSDFRIGTALVSMYVKG--GSMDDARQVFD 217

Query: 80  RILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIK 139
             L    +  +N+++  Y  +    +A  LF  +    L P+  +   ++ G     A+ 
Sbjct: 218 G-LHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALA 276

Query: 140 EGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYV 199
            GK +H      G   D  V +SL+ MY   G I+  RRVFD M  +D+VSW  +I+GY 
Sbjct: 277 WGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYA 336

Query: 200 KKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMP----NRN 249
           + G +E A  LF  M      PDR   ++  +++  +    +  AREI  ++       +
Sbjct: 337 ENGNIEDAFGLFATMQEEGIQPDR--ITYMHIMNACAISANLNHAREIHSQVDIAGFGTD 394

Query: 250 LVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLI 309
           L+   A+++ Y K G +  A ++FD M  RD+++W++MI  Y  NG   EA E    M  
Sbjct: 395 LLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKR 454

Query: 310 GDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIES 369
            ++ P+  T ++ L+A   L  L+ G  +++  +K   V    LG  LI M +K GS+E 
Sbjct: 455 SNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKADLVSHVPLGNALIIMNAKHGSVER 514

Query: 370 ALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSH 429
           A  +F  + ++ V  W AMI G  +HG A +AL LF++M +   +P ++TF+GVL+ACS 
Sbjct: 515 ARYIFDTMVRRDVITWNAMIGGYSLHGNAREALYLFDRMLKERFRPNSVTFVGVLSACSR 574

Query: 430 AGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWM 489
           AG V++GRR+F  ++   GI PT++ YGC+VD+L R G L+EA+  I+SMP++P   IW 
Sbjct: 575 AGFVDEGRRFFTYLLEGRGIVPTVKLYGCMVDLLGRAGELDEAELLIKSMPVKPTSSIWS 634

Query: 490 SLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRG 549
           SLL   R HGN D+ E AA   + + P     YV LS++YAAAG W+ V++VR++M+ RG
Sbjct: 635 SLLVACRIHGNLDVAERAAERCLMIDPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRG 694

Query: 550 FRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIE 609
            RK+ G + IE  G +H FVV D+SHP   EI+++L+ + N +K  G++P T  VL  + 
Sbjct: 695 IRKEQGCTWIEVAGKVHTFVVEDRSHPLVGEIYAELARLMNAIKREGYIPITQNVLHDVG 754

Query: 610 DQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIV 669
           +Q+++EA +  HSE+LAIA+G++++ S +PIRI KNLRVC+DCHS +K +S +  REII 
Sbjct: 755 EQQKEEA-ISYHSEKLAIAYGVLSLPSGTPIRIYKNLRVCSDCHSASKFISKVTGREIIA 813

Query: 670 RDNSRFHHFKNGSCSCKDFW 689
           RD SRFHHFK+G CSC D+W
Sbjct: 814 RDASRFHHFKDGVCSCGDYW 833



 Score =  221 bits (564), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 141/467 (30%), Positives = 238/467 (50%), Gaps = 13/467 (2%)

Query: 70  NLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVI 129
           N+  AR IFD + ++ ++V +N LI  Y       EA  LF  ++D  L P   T   V+
Sbjct: 107 NVTEARQIFDSV-ENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVL 165

Query: 130 KGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLV 189
              +    +  GK++H  V   GF  D  + ++LVSMY K G +D  R+VFD +  +D+ 
Sbjct: 166 DACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVS 225

Query: 190 SWNCLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRM 245
           ++N ++ GY K G+ E A +LF  M    L     S+  ++DG      +   + +  + 
Sbjct: 226 TFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQC 285

Query: 246 PNRNLVS----WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEAL 301
            N  LV       ++I  Y   G ++ A  +FD+M++RD+++W  MI GY  NG   +A 
Sbjct: 286 MNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAF 345

Query: 302 ELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMY 361
            L  TM    + P+  T +  ++A A  A LN  R +HS +   GF  D ++ T L+ MY
Sbjct: 346 GLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTALVHMY 405

Query: 362 SKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFI 421
           +KCG+I+ A  VF A+ ++ V  W+AMI     +G  T+A + F+ M R  ++P  +T+I
Sbjct: 406 AKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYI 465

Query: 422 GVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPM 481
            +LNAC H G ++ G   +   I    +   +     L+ +  + G +E A+   ++M +
Sbjct: 466 NLLNACGHLGALDVGMEIYTQAIKA-DLVSHVPLGNALIIMNAKHGSVERARYIFDTM-V 523

Query: 482 RPNFVIWMSLLSGARNHGNKDIGEYAANNLIK--VAPDTIGCYVVLS 526
           R + + W +++ G   HGN     Y  + ++K    P+++    VLS
Sbjct: 524 RRDVITWNAMIGGYSLHGNAREALYLFDRMLKERFRPNSVTFVGVLS 570



 Score =  178 bits (452), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 119/413 (28%), Positives = 210/413 (50%), Gaps = 17/413 (4%)

Query: 141 GKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVK 200
           GKQ+   + + G   + + L++L+ +Y+  G +   R++FD++++K +V+WN LI GY +
Sbjct: 76  GKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQ 135

Query: 201 KGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS---- 252
            G V+ A  LF +M D  L     ++  ++D  S    +   +E+  ++     VS    
Sbjct: 136 VGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRI 195

Query: 253 WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDV 312
             A+++ Y+K G +D A ++FD + IRD+ T+N M+ GY  +G + +A EL   M    +
Sbjct: 196 GTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGL 255

Query: 313 LPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALT 372
            PN  + +S L        L  G+ +H+  +  G V D  + T LI+MY+ CGSIE A  
Sbjct: 256 KPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARR 315

Query: 373 VFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGL 432
           VF  +  + V  WT MI G   +G    A  LF  M   G++P  IT++ ++NAC+ +  
Sbjct: 316 VFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISAN 375

Query: 433 VNDGRRYFNMM-INDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSL 491
           +N  R   + + I  +G +  +     LV +  + G +++A+   ++MP R + V W ++
Sbjct: 376 LNHAREIHSQVDIAGFGTDLLVST--ALVHMYAKCGAIKDARQVFDAMPRR-DVVSWSAM 432

Query: 492 LSGARNHGNKDIGEYAANNLIK---VAPDTIGCYVVLSNIYAAAGQWDKVSEV 541
           + GA          +   +L+K   + PD +  Y+ L N     G  D   E+
Sbjct: 433 I-GAYVENGYGTEAFETFHLMKRSNIEPDGV-TYINLLNACGHLGALDVGMEI 483



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 90/307 (29%), Positives = 152/307 (49%), Gaps = 5/307 (1%)

Query: 249 NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETML 308
           N+   N +I  Y   G+V  A ++FD +E + ++TWN++IAGY   G   EA  L   M+
Sbjct: 91  NIYELNTLIKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMV 150

Query: 309 IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIE 368
              + P+  T +S L A +  A LN G+ +H+ +V  GFV D  +GT L+ MY K GS++
Sbjct: 151 DEGLEPSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMD 210

Query: 369 SALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACS 428
            A  VF  +  + V  +  M+ G    G   +A +LF +M ++G+KP  I+F+ +L+ C 
Sbjct: 211 DARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCW 270

Query: 429 HAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIW 488
               +  G+      +N  G+   I     L+ +    G +E A+   ++M +R + V W
Sbjct: 271 TPEALAWGKAVHAQCMNA-GLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVR-DVVSW 328

Query: 489 MSLLSGARNHGNKD--IGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMK 546
             ++ G   +GN +   G +A      + PD I  Y+ + N  A +   +   E+   + 
Sbjct: 329 TVMIEGYAENGNIEDAFGLFATMQEEGIQPDRI-TYMHIMNACAISANLNHAREIHSQVD 387

Query: 547 KRGFRKD 553
             GF  D
Sbjct: 388 IAGFGTD 394


>gi|225453947|ref|XP_002274056.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Vitis vinifera]
          Length = 635

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 252/604 (41%), Positives = 360/604 (59%), Gaps = 42/604 (6%)

Query: 27  ILKFSSTHKETQQLHALSVKTNLIYHSGISSRL-LSLYVDPHINNLHYARSIF------D 79
           +L  S T  +  Q+H+  + T  I +  +++R+ L+     H   + +AR +F       
Sbjct: 20  LLPKSKTLHDVNQIHSRLITTGFINNPSLTTRIILNFSSSSHKPLVEFARYLFMSRHFGR 79

Query: 80  RILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIK 139
           +  +  +  L+N +IK +   +   EA  +F  +L+  +  D F+   V+K  +RLG IK
Sbjct: 80  KHRKQDNPFLWNAIIKSFSHGEDPREAFVIFNLMLENGVCVDKFSFSLVLKACSRLGLIK 139

Query: 140 EGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYV 199
           EG QIHGL+ ++  G D F+ + L+ +Y + G + + R++FD M  +D VS+N +IDGYV
Sbjct: 140 EGMQIHGLLGRMEIGSDVFLQNCLMCLYLRCGCLGIARQLFDRMMKRDSVSFNSMIDGYV 199

Query: 200 KKGEVE----------------------------------VAMKLFDEMPDRDLFSWTCL 225
           K G V+                                  VA +LF+EMP RDL SW  +
Sbjct: 200 KHGMVKSARELFDVMPMEQKNLISWNSMISGYARSEEGLRVAWELFEEMPKRDLISWNSM 259

Query: 226 VDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWN 285
           +DG  KCGK+E A  +F +MP R++VSW  M++GY K G++D A  LFD+M  RD+I+ N
Sbjct: 260 IDGCVKCGKMENAHHLFNQMPKRDVVSWANMVDGYAKLGEIDIARGLFDEMPERDVISCN 319

Query: 286 SMIAGYELNGRFMEALELLETMLI-GDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVK 344
           +M+AGY  NG  MEAL     ML   ++ P++ATL+  LSA+A L   ++G  +H YI  
Sbjct: 320 AMMAGYVQNGHLMEALNFFHDMLSRKELFPDNATLLITLSAIAQLGHFDEGVALHCYIED 379

Query: 345 NGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDL 404
           NGF +   LG  LI MY+KCGSI++AL+VF  I  K + HW A+I GL +HG+   A +L
Sbjct: 380 NGFSLSEKLGVALIDMYAKCGSIDNALSVFEDIDDKSIDHWNAIIGGLAIHGLGEVAFEL 439

Query: 405 FNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILC 464
           F +M ++ +KP  ITFIGVLNAC+HAGLV +G   F +M   + +EP ++HYGC+VDIL 
Sbjct: 440 FMEMEKLFVKPDDITFIGVLNACNHAGLVKEGLMCFELMRRVHKVEPKLQHYGCMVDILG 499

Query: 465 RTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVV 524
           R G++EEAK  +E MP+ PN V+W +LLS  RNH N  IGE  A +LI V       YV+
Sbjct: 500 RAGHVEEAKKFVEKMPIEPNDVVWRTLLSACRNHENFTIGEPVAKHLISVDSYNPSSYVL 559

Query: 525 LSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSK 584
           LSNIYA  G W+ V  +R MMK+R  +K PG S IE  G +HEF V DKSHPQ  EI+S 
Sbjct: 560 LSNIYAGFGMWNDVYRIRMMMKQRDLKKIPGCSQIELEGNVHEFFVRDKSHPQVREIYSM 619

Query: 585 LSEM 588
           L  +
Sbjct: 620 LDSL 623


>gi|357121594|ref|XP_003562503.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Brachypodium distachyon]
          Length = 544

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 229/499 (45%), Positives = 322/499 (64%), Gaps = 5/499 (1%)

Query: 192 NCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLV 251
           N  I GY   G V  A ++FD MP RD  S+  ++ G++  G V  A+ +F R+     V
Sbjct: 50  NAFIQGYCSAGRVTDARRVFDGMPRRDTVSFNSMIHGYAVSGDVGSAQRLFERVLAPTPV 109

Query: 252 SWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGD 311
           +W +M+ G+ +AGDV+SA  +F++M  RDL++WN+MI+G   N   +EAL L   M+   
Sbjct: 110 TWTSMVAGFCRAGDVESARRVFEEMPERDLVSWNAMISGCVGNRLPVEALCLFRWMMEEG 169

Query: 312 VLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESAL 371
            +PN  T+VS LSA  G   L  G+W+H ++ K     D  LGT L+ MY+KCG++E AL
Sbjct: 170 FVPNRGTVVSVLSACTGAGALETGKWVHVFVEKKRLRWDEFLGTALVDMYAKCGAVELAL 229

Query: 372 TVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG-MKPTAITFIGVLNACSHA 430
            VF  +  +    W AMI GL M+G + +ALD+F +M   G + P  +TF+GVL ACSHA
Sbjct: 230 EVFTGLRARNTCTWNAMINGLAMNGYSAKALDMFRQMELNGTVAPDEVTFVGVLLACSHA 289

Query: 431 GLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMS 490
           G V+ G+ +F  +   YG+E  +EHY C+VD+L R+G+L+EA   I  MPM+P+ V+W +
Sbjct: 290 GFVDAGKEHFYTIPQKYGVELILEHYACMVDLLARSGHLQEAHKLITEMPMKPDVVVWRA 349

Query: 491 LLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGF 550
           LL G R H N  + E   N + ++     G +V+LSN+YAA G+W+ V +VR  M+ +G 
Sbjct: 350 LLGGCRLHKNVKMAE---NVISEMEATCSGDHVLLSNLYAAVGRWNGVEDVRRTMRSKGI 406

Query: 551 RKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIED 610
            K PG SS+E  G +HEF+ GDKSHP  D+IH+KL E+  +++  G+V +T +V   IED
Sbjct: 407 EKIPGCSSVEMDGSIHEFISGDKSHPSYDDIHAKLIEIGGRMQQHGYVTETAEVFYDIED 466

Query: 611 QKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVR 670
           + EKE  L  HSE+LAIAFGLI     + IRIVKNLR C DCHS  KL+S IY+REI+VR
Sbjct: 467 E-EKEQALGYHSEKLAIAFGLIGGPPEATIRIVKNLRFCTDCHSFAKLVSKIYHREIVVR 525

Query: 671 DNSRFHHFKNGSCSCKDFW 689
           D +RFHHF+ G+CSC DFW
Sbjct: 526 DRARFHHFRGGACSCNDFW 544



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 159/358 (44%), Gaps = 39/358 (10%)

Query: 69  NNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCV 128
            ++  AR +F+ + +   LV +N +I   V N+   EAL LF  +++   +P+  T+  V
Sbjct: 122 GDVESARRVFEEMPER-DLVSWNAMISGCVGNRLPVEALCLFRWMMEEGFVPNRGTVVSV 180

Query: 129 IKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDL 188
           +      GA++ GK +H  V K    +D+F+ ++LV MYAK G ++L   VF  +  ++ 
Sbjct: 181 LSACTGAGALETGKWVHVFVEKKRLRWDEFLGTALVDMYAKCGAVELALEVFTGLRARNT 240

Query: 189 VSWNCLIDGYVKKGEVEVAMKLFDEM-------PDRDLFSWTCLVDGFSKCGKVEIAREI 241
            +WN +I+G    G    A+ +F +M       PD   F    L    S  G V+  +E 
Sbjct: 241 CTWNAMINGLAMNGYSAKALDMFRQMELNGTVAPDEVTFVGVLL--ACSHAGFVDAGKEH 298

Query: 242 FYRMPNRNLVS-----WNAMINGYMKAGDVDSACELFDDMEIR-DLITWNSMIAGYELNG 295
           FY +P +  V      +  M++   ++G +  A +L  +M ++ D++ W +++ G  L+ 
Sbjct: 299 FYTIPQKYGVELILEHYACMVDLLARSGHLQEAHKLITEMPMKPDVVVWRALLGGCRLHK 358

Query: 296 RFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGT 355
               A  ++  M        D  L+S L A         GRW     V+      G    
Sbjct: 359 NVKMAENVISEMEA--TCSGDHVLLSNLYAAV-------GRWNGVEDVRRTMRSKG---- 405

Query: 356 LLIQMYSKCGSIESALTVFRAISKKKVG------HWTAMIVG--LGMHGMATQALDLF 405
             I+    C S+E   ++   IS  K        H   + +G  +  HG  T+  ++F
Sbjct: 406 --IEKIPGCSSVEMDGSIHEFISGDKSHPSYDDIHAKLIEIGGRMQQHGYVTETAEVF 461



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 86/360 (23%), Positives = 146/360 (40%), Gaps = 81/360 (22%)

Query: 91  NLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFK 150
           N  I+ Y    R  +A  +F  +  R    D  +   +I G A  G +   +++    F+
Sbjct: 50  NAFIQGYCSAGRVTDARRVFDGMPRR----DTVSFNSMIHGYAVSGDVGSAQRL----FE 101

Query: 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
                     +S+V+ + + G+++  RRVF+ M ++DLVSWN +I G V       A+ L
Sbjct: 102 RVLAPTPVTWTSMVAGFCRAGDVESARRVFEEMPERDLVSWNAMISGCVGNRLPVEALCL 161

Query: 211 FDEM------PDR---------------------------------DLFSWTCLVDGFSK 231
           F  M      P+R                                 D F  T LVD ++K
Sbjct: 162 FRWMMEEGFVPNRGTVVSVLSACTGAGALETGKWVHVFVEKKRLRWDEFLGTALVDMYAK 221

Query: 232 CGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGY 291
           CG VE+A E+F  +  RN  +WNAMING    G    A ++F  ME+             
Sbjct: 222 CGAVELALEVFTGLRARNTCTWNAMINGLAMNGYSAKALDMFRQMELN------------ 269

Query: 292 ELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDG 351
                             G V P++ T V  L A +    ++ G+  H Y +   + V+ 
Sbjct: 270 ------------------GTVAPDEVTFVGVLLACSHAGFVDAGK-EHFYTIPQKYGVEL 310

Query: 352 VLG--TLLIQMYSKCGSIESALTVFRAIS-KKKVGHWTAMIVGLGMHGMATQALDLFNKM 408
           +L     ++ + ++ G ++ A  +   +  K  V  W A++ G  +H     A ++ ++M
Sbjct: 311 ILEHYACMVDLLARSGHLQEAHKLITEMPMKPDVVVWRALLGGCRLHKNVKMAENVISEM 370



 Score = 46.6 bits (109), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 69/174 (39%), Gaps = 16/174 (9%)

Query: 338 MHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGM 397
           +H+   K GF++        IQ Y   G +  A  VF  + ++    + +MI G  + G 
Sbjct: 33  LHAVCTKLGFLLCTRTNNAFIQGYCSAGRVTDARRVFDGMPRRDTVSFNSMIHGYAVSGD 92

Query: 398 ATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYG 457
              A  LF ++    + PT +T+  ++     AG V   RR F  M     +       G
Sbjct: 93  VGSAQRLFERV----LAPTPVTWTSMVAGFCRAGDVESARRVFEEMPERDLVSWNAMISG 148

Query: 458 CL-----VDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEY 506
           C+     V+ LC   ++ E           PN    +S+LS     G  + G++
Sbjct: 149 CVGNRLPVEALCLFRWMMEEGFV-------PNRGTVVSVLSACTGAGALETGKW 195


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 251/658 (38%), Positives = 393/658 (59%), Gaps = 21/658 (3%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINN--LHYARSIFDRILQHPSLVLYNL 92
           +E Q +     + N I  +G+        V  +INN  ++ AR +FDR+ +  ++V +  
Sbjct: 146 QEAQNMFDKMSERNTISWNGL--------VSGYINNGMINEAREVFDRMPER-NVVSWTA 196

Query: 93  LIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLG 152
           +++ YV      EA TLF  + ++ ++    +   ++ G  + G I E  ++    F + 
Sbjct: 197 MVRGYVKEGMISEAETLFWQMPEKNVV----SWTVMLGGLLQEGRIDEACRL----FDMM 248

Query: 153 FGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFD 212
              D    ++++  Y + G +   R +FD M  +++VSW  +I GYV+  +V++A KLF+
Sbjct: 249 PEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFE 308

Query: 213 EMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACEL 272
            MP+++  SWT ++ G++ CG+++ A E+F  MP +++V+ NAMI  + + G+V  A ++
Sbjct: 309 VMPEKNEVSWTAMLKGYTNCGRLDEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQV 368

Query: 273 FDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVL 332
           FD M  +D  TW++MI  YE  G  ++ALEL   M    + PN  +L+S LS  AGLA L
Sbjct: 369 FDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANL 428

Query: 333 NKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGL 392
           + GR +H+ +V++ F +D  + ++L+ MY KCG++  A  VF   + K V  W ++I G 
Sbjct: 429 DHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGY 488

Query: 393 GMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT 452
             HG+  +AL +F+ M   G+ P  +TF+GVL+ACS+ G V  G   FN M   Y +E  
Sbjct: 489 AQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQK 548

Query: 453 IEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLI 512
           IEHY C+VD+L R G L EA   IE MPM  + +IW +LL   R H   D+ E AA  L+
Sbjct: 549 IEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLL 608

Query: 513 KVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGD 572
            + P   G +++LSNIYA+ G+WD V+E+R  M+ R   K PG S I     +H+F  GD
Sbjct: 609 VLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVEKKVHKFTGGD 668

Query: 573 KS-HPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGL 631
            S HP+  EI+  L  +   L+ AG+ PD + VL  + D++EK   LE HSE+LA+A+GL
Sbjct: 669 SSGHPEHSEINRILEWLSGLLREAGYYPDQSFVLHDV-DEEEKVQSLEYHSEKLAVAYGL 727

Query: 632 INVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           + +    PIR++KNLRVC DCH+  KL++ +  REII+RD +RFHHFK+GSCSC+D+W
Sbjct: 728 LKIPIGMPIRVMKNLRVCGDCHAAIKLIAKVTGREIILRDANRFHHFKDGSCSCRDYW 785



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 117/403 (29%), Positives = 190/403 (47%), Gaps = 58/403 (14%)

Query: 153 FGFDKFVLS--SLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
           F    F++S  SL++ Y++ G+I+  R VFD M DK+++SWN ++ GY +    + A  +
Sbjct: 92  FYCSNFIISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNM 151

Query: 211 FDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMK-------- 262
           FD+M +R+  SW  LV G+   G +  ARE+F RMP RN+VSW AM+ GY+K        
Sbjct: 152 FDKMSERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAE 211

Query: 263 -----------------------AGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFME 299
                                   G +D AC LFD M  +D++T  +MI GY   GR +E
Sbjct: 212 TLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVE 271

Query: 300 ALELLE-----------TMLIGDVLPNDATLVSAL-------SAVAGLAVL----NKGRW 337
           A  L +           TM+ G V      +   L       + V+  A+L    N GR 
Sbjct: 272 ARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKGYTNCGRL 331

Query: 338 MHSYIVKNGFVVDGVLG-TLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHG 396
             +  + N   +  V+    +I  + + G +  A  VF  + +K  G W+AMI      G
Sbjct: 332 DEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKG 391

Query: 397 MATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHY 456
           +   AL+LF  M R G++P   + I VL+ C+    ++ GR     ++     +  +   
Sbjct: 392 LELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQ-FDLDVYVA 450

Query: 457 GCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
             L+ +  + G L +AK   +   ++ + V+W S+++G   HG
Sbjct: 451 SVLLSMYIKCGNLAKAKQVFDRFAVK-DVVMWNSIITGYAQHG 492


>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 262/639 (41%), Positives = 371/639 (58%), Gaps = 27/639 (4%)

Query: 67  HINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLP 126
           H  +++YA   F R +  P ++L+N +IK Y         + ++ D+    + P+ FT  
Sbjct: 31  HFGDVNYAHKAF-REVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFL 89

Query: 127 CVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK 186
            V+K          GKQIHG  FK GFG + FV +SLVSMYAKFG+I   R VFD + D+
Sbjct: 90  YVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDR 149

Query: 187 DLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKCGKVE---- 236
            +VSW  +I GYV+ G+   A+ +F EM      PD     W  LV   +    VE    
Sbjct: 150 TVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPD-----WIALVSVMTAYTNVEDLGQ 204

Query: 237 ------IAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAG 290
                 +  ++        ++S   M   Y K G V+ A   F+ ME  +LI WN+MI+G
Sbjct: 205 GKSIHGLVTKLGLEFEPDIVISLTTM---YAKRGLVEVARFFFNRMEKPNLILWNAMISG 261

Query: 291 YELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVD 350
           Y  NG   EA++L   M+  ++  +  T+ SA+ A A +  L   RW+  YI K+ +  D
Sbjct: 262 YANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDD 321

Query: 351 GVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCR 410
             + T LI MY+KCGSI  A  VF  ++ K V  W+ MI+G G+HG   +A+ L+N+M +
Sbjct: 322 TFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQ 381

Query: 411 MGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLE 470
            G+ P   TFIG+L AC ++GLV +G   F++M  D+GIEP  +HY C+VD+L R GYL 
Sbjct: 382 AGVCPNDGTFIGLLTACKNSGLVKEGWELFHLM-PDHGIEPHHQHYSCVVDLLGRAGYLN 440

Query: 471 EAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYA 530
           +A   I SMP++P   +W +LLS  + H    +GE AA  L  + P   G YV LSN+YA
Sbjct: 441 QAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGEIAAEQLFILDPYNTGHYVQLSNLYA 500

Query: 531 AAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRN 590
           +A  W +V+ VR MM ++G  KD G SSIE  G L  F VGD+SHP++ EI  +L  +  
Sbjct: 501 SAHLWTRVANVRLMMTQKGLNKDLGHSSIEINGNLETFQVGDRSHPKSKEIFEELDRLEK 560

Query: 591 KLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCN 650
           +LKAAG+VP    VL  + + +E E  L +HSERLA+A+G+I+    + +RI KNLR C 
Sbjct: 561 RLKAAGYVPHMESVLHDL-NHEEIEETLCHHSERLAVAYGIISTAPGTTLRITKNLRACI 619

Query: 651 DCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           +CHS  KL+S + +REII+RD  RFHHFK+G CSC DFW
Sbjct: 620 NCHSAIKLISKLVDREIIIRDAKRFHHFKDGVCSCGDFW 658



 Score =  125 bits (314), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 98/404 (24%), Positives = 185/404 (45%), Gaps = 15/404 (3%)

Query: 157 KFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM-- 214
           +F++   ++    FG+++   + F  + + D++ WN +I GY +K  V+  ++++ +M  
Sbjct: 19  RFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQI 78

Query: 215 ----PDRDLFSW---TCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVD 267
               P+   F +    C        GK +I  + F      N+   N++++ Y K G + 
Sbjct: 79  SQVHPNCFTFLYVLKACGGTSVEGIGK-QIHGQTFKYGFGSNVFVQNSLVSMYAKFGQIS 137

Query: 268 SACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVA 327
            A  +FD +  R +++W S+I+GY  NG  MEAL + + M   +V P+   LVS ++A  
Sbjct: 138 YARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYT 197

Query: 328 GLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTA 387
            +  L +G+ +H  + K G   +  +   L  MY+K G +E A   F  + K  +  W A
Sbjct: 198 NVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNA 257

Query: 388 MIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDY 447
           MI G   +G   +A+ LF +M    ++  +IT    + A +  G +   R     +    
Sbjct: 258 MISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSE 317

Query: 448 GIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIW--MSLLSGARNHGNKDIGE 505
             + T  + G L+D+  + G +  A+   + +  + + V+W  M +  G   HG + I  
Sbjct: 318 YRDDTFVNTG-LIDMYAKCGSIYLARCVFDRVADK-DVVLWSVMIMGYGLHGHGQEAICL 375

Query: 506 YAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRG 549
           Y       V P+  G ++ L      +G   +  E+  +M   G
Sbjct: 376 YNEMKQAGVCPND-GTFIGLLTACKNSGLVKEGWELFHLMPDHG 418


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 254/663 (38%), Positives = 384/663 (57%), Gaps = 52/663 (7%)

Query: 74   ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL-DRFLLPDNFTLPCVIKGA 132
            A  +F  +L+    V YN L+  YV   ++ EAL L+ D+  +  + PD FT   ++   
Sbjct: 431  AHQVFRSLLERNE-VSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLC 489

Query: 133  ARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWN 192
            A      +G+QIH  + +     +  V + LV MY++ G ++  + +F+ M +++  SWN
Sbjct: 490  ANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWN 549

Query: 193  CLIDGYVKKGEVEVAMKLFDEM------PD--------------------RDLFSW---- 222
             +I+GY + GE + A++LF +M      PD                    R+L ++    
Sbjct: 550  SMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRN 609

Query: 223  ---------TCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELF 273
                       LVD ++KCG ++ A +++ +   ++++  N M++ ++ +G  + A  LF
Sbjct: 610  TMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLF 669

Query: 274  DDMEIRDLITWNSMIAGYELNG----RFMEALELLETMLIGDVLPNDATLVSALSAVAGL 329
            D ME R+   WNS++AGY   G     F   LE+LE+ +  DVL    T+V+ ++  + L
Sbjct: 670  DQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVL----TMVTIVNLCSSL 725

Query: 330  AVLNKGRWMHSYIVKNGFV-VDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAM 388
              L  G  +HS I+K GFV    VL T L+ MYSKCG+I  A TVF  ++ K +  W AM
Sbjct: 726  PALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAM 785

Query: 389  IVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYG 448
            I G   HG + +AL L+ +M + GM P  +TF+ +L+ACSH GLV +G R F  M  DY 
Sbjct: 786  ISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYN 845

Query: 449  IEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAA 508
            IE   EHY C+VD+L R G LE+AK  +E MP+ P    W +LL   R H + D+G  AA
Sbjct: 846  IEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAA 905

Query: 509  NNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEF 568
              L ++ P   G YV++SNIYAAAG+W +V ++R+MMK +G +KDPG S IE    +  F
Sbjct: 906  QRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSEIQIF 965

Query: 569  VVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAE--LENHSERLA 626
              G K+HP+T+EI++ L  +  + K  G++PDT+ +L  ++D KE+E E  L  HSERLA
Sbjct: 966  HAGSKTHPKTEEIYNNLRHLTLQSKGLGYIPDTSFILQNVKDIKEEEEEEYLLQHSERLA 1025

Query: 627  IAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCK 686
            ++ GLI++  +S IR+ KNLR+C DCH+ TK +S I  R II RD +RFHHF+NG CSC 
Sbjct: 1026 LSLGLISLPKKSTIRVFKNLRICGDCHTATKFISKITGRRIIARDTNRFHHFENGKCSCG 1085

Query: 687  DFW 689
            D+W
Sbjct: 1086 DYW 1088



 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 143/479 (29%), Positives = 230/479 (48%), Gaps = 13/479 (2%)

Query: 31  SSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPH-INNLHYARSIFDRILQHPSLVL 89
           S++ +  + +H   +       + + +++L LY     +++L YAR +F+ + +  +L  
Sbjct: 84  SNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPER-NLTA 142

Query: 90  YNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVF 149
           +N +I  Y       E L L+  +       D FT P VIK    +  +   +Q+   V 
Sbjct: 143 WNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAMEDMGGVRQLQSSVV 202

Query: 150 KLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMK 209
           K G   + FV  +LV  YA+FG +D      D ++   +V+WN +I GYVK    E A  
Sbjct: 203 KAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWG 262

Query: 210 LFDEM------PDRDLFSWTCLVDGF--SKCGKVEIAREIFYRMPNRNLVSWNAMINGYM 261
           +FD M      PD   F+    V G   S+ G  ++  ++       +    NA+I+ Y 
Sbjct: 263 IFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYA 322

Query: 262 KAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVS 321
           K  D +S  ++FD+M  R+ +TWNS+I+     G F +AL L   M       N   L S
Sbjct: 323 KCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGS 382

Query: 322 ALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKK 381
            L A AGLA + KGR +H ++V+N    D +LG+ L+ MYSKCG +E A  VFR++ ++ 
Sbjct: 383 ILMASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERN 442

Query: 382 VGHWTAMIVGLGMHGMATQALDLFNKM-CRMGMKPTAITFIGVLNACSHAGLVNDGRRYF 440
              + A++ G    G A +AL+L++ M    G++P   TF  +L  C++    N GR+  
Sbjct: 443 EVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIH 502

Query: 441 NMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
             +I    I   I     LV +    G L  AK     M  R N   W S++ G + +G
Sbjct: 503 AHLIR-ANITKNIIVETELVHMYSECGRLNYAKEIFNRMAER-NAYSWNSMIEGYQQNG 559



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 118/463 (25%), Positives = 231/463 (49%), Gaps = 42/463 (9%)

Query: 77  IFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLG 136
           +FD + +  + V +N +I         ++AL LF  + +     + F L  ++  +A L 
Sbjct: 333 VFDEMGER-NQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLA 391

Query: 137 AIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLID 196
            I +G+++HG + +     D  + S+LV MY+K G ++   +VF ++ +++ VS+N L+ 
Sbjct: 392 DIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLA 451

Query: 197 GYVKKGEVEVAMKLFDEMPDRD-----LFSWTCLVDGFSKCGKVEIAREIFYRMP----N 247
           GYV++G+ E A++L+ +M   D      F++T L+   +        R+I   +      
Sbjct: 452 GYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANIT 511

Query: 248 RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETM 307
           +N++    +++ Y + G ++ A E+F+ M  R+  +WNSMI GY+ NG   EAL L + M
Sbjct: 512 KNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQM 571

Query: 308 LIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSI 367
            +  + P+  +L S LS+   L+   KGR +H++IV+N    +G+L  +L+ MY+KCGS+
Sbjct: 572 QLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSM 631

Query: 368 ESALTVFRAISKKKV-------------------------------GHWTAMIVGLGMHG 396
           + A  V+    KK V                                 W +++ G    G
Sbjct: 632 DYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYANKG 691

Query: 397 MATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHY 456
           +  ++ + F +M    ++   +T + ++N CS    +  G +  +++I    +  ++   
Sbjct: 692 LKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLE 751

Query: 457 GCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
             LVD+  + G + +A++  ++M  + N V W +++SG   HG
Sbjct: 752 TALVDMYSKCGAITKARTVFDNMNGK-NIVSWNAMISGYSKHG 793



 Score = 40.8 bits (94), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 45/236 (19%), Positives = 97/236 (41%), Gaps = 48/236 (20%)

Query: 39  QLHALSVKTNLIYHSGI-SSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           QLH+L +K   +  S +  + L+ +Y       +  AR++FD  +   ++V +N +I  Y
Sbjct: 733 QLHSLIIKKGFVNCSVVLETALVDMY--SKCGAITKARTVFDN-MNGKNIVSWNAMISGY 789

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
             +  S EAL L+ ++  + + P+  T   ++   +  G ++E                 
Sbjct: 790 SKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEE----------------- 832

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVS-----WNCLIDGYVKKGEVEVAMKLFD 212
                             G R+F +M +   +      + C++D   + G +E A +  +
Sbjct: 833 ------------------GLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVE 874

Query: 213 EMP-DRDLFSWTCLVDGFSKCGKVEIAR---EIFYRMPNRNLVSWNAMINGYMKAG 264
           +MP + ++ +W  L+        +++ R   +  + +  +N   +  M N Y  AG
Sbjct: 875 KMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAG 930


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 249/657 (37%), Positives = 395/657 (60%), Gaps = 16/657 (2%)

Query: 45  VKTNLIYHSGISSRLLSLYVDPHINNLHYARSIF--DRILQHPSLVLYNLLIKCYVFNQR 102
           V T  I+H    ++L++  +      + YA S+F   R+L    ++ +N +++ +V +  
Sbjct: 2   VVTGFIHHKPSLNKLIAHVLSMGSLGVGYAYSVFAHTRVLD---VLTWNSMLRAFVNSNM 58

Query: 103 SHEALTLFCDLLDRFL-LPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLS 161
              AL  + ++L+R   +PD FT P ++KG A L   K GK +HG V K     D ++ +
Sbjct: 59  PRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIET 118

Query: 162 SLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR---- 217
           +L++MYA  G++   R +F+ M  ++ V W  +I GY+K      A+ L+ +M +     
Sbjct: 119 TLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSP 178

Query: 218 DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNL----VSWNAMINGYMKAGDVDSACELF 273
           D  +   LV   ++   + +  ++   +   ++    V  +A++N Y K GD+ +A ++F
Sbjct: 179 DEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVF 238

Query: 274 DDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIG-DVLPNDATLVSALSAVAGLAVL 332
           D +  +D+  W+++I GY  N R  EAL+L   +  G ++ PN+ T+++ +SA A L  L
Sbjct: 239 DQLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDL 298

Query: 333 NKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGL 392
             GRW+H YI +        L   LI M+SKCG I++A  +F ++S K +  W +M+ GL
Sbjct: 299 ETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGL 358

Query: 393 GMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT 452
            +HG+  +AL  F+ M    ++P  ITFIGVL ACSHAGLV +G++ F  +   YG+   
Sbjct: 359 ALHGLGREALAQFHLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLK 418

Query: 453 IEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLI 512
            EHYGC+VD+LCR G L EA+  I  MP++P+  IW S+L   R + N ++GE AA  L+
Sbjct: 419 SEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARCLL 478

Query: 513 KVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGD 572
           ++ P   G Y++LSNIYA    W++V +VRE+M ++G +K PG SS+    + H F+ GD
Sbjct: 479 ELEPTNDGVYILLSNIYARRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAGD 538

Query: 573 KSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLI 632
            SHP+  EI   L ++R KLK  G+V DT++VLL I+D K KE  +  HSE+LA+ +GL+
Sbjct: 539 CSHPEIAEISIMLRQVREKLKLVGYVADTSEVLLNIDDNK-KEESVSQHSEKLALCYGLL 597

Query: 633 NVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
             +    I I+KNLRVC+DCH++ KL+S IY R+I +RD +RFHHFK+GSCSC+D+W
Sbjct: 598 KSEIGGRIVILKNLRVCSDCHTLIKLVSKIYQRQITLRDRNRFHHFKDGSCSCRDYW 654


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 251/605 (41%), Positives = 358/605 (59%), Gaps = 20/605 (3%)

Query: 103  SHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSS 162
            S EAL  F  L    L+P   + PC IK  + L  +  G+  H   F  GF  D FV S+
Sbjct: 1996 SVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSA 2055

Query: 163  LVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL--- 219
            L+ MY+K G++   R +FD +  +++VSW  +I GYV+  + + A+ LF +  + +    
Sbjct: 2056 LIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVE 2115

Query: 220  ------FSWTCLVDGFSKCGKVE-------IAREIFYRMPNRNLVSWNAMINGYMKAGDV 266
                       +V   S C +V        +   +  +  + ++   N +++ Y K G  
Sbjct: 2116 DGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQP 2175

Query: 267  DSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETML--IGDVLPNDATLVSALS 324
              + ++FD ME +D I+WNSMIA Y  +G   EALE+   M+  +G V  N  TL + L 
Sbjct: 2176 LVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVG-VRYNAVTLSAVLL 2234

Query: 325  AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGH 384
            A A    L  G+ +H  ++K     +  +GT +I MY KCG +E A   F  + +K V  
Sbjct: 2235 ACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKS 2294

Query: 385  WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMI 444
            WTAM+ G GMHG A +ALD+F KM R G+KP  ITF+ VL ACSHAGLV +G  +FN M 
Sbjct: 2295 WTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMK 2354

Query: 445  NDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIG 504
            + Y IEP IEHYGC+VD+  R G L EA + I+ M M+P+FV+W SLL   R H N D+G
Sbjct: 2355 HKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLG 2414

Query: 505  EYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGV 564
            E AA  L ++ PD  G YV+LSN+YA AG+W  V  +R +MK R   K PG S +E +G 
Sbjct: 2415 EIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQLVKPPGFSLVELKGR 2474

Query: 565  LHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSER 624
            +H F+VGDK HP  + I+  L ++  +L+  G+VP+ T VL  + D++EKE  L  HSE+
Sbjct: 2475 VHVFLVGDKEHPHHEMIYKYLEKLTLELQKIGYVPNMTSVLHDV-DEEEKEIILRVHSEK 2533

Query: 625  LAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCS 684
            LA+AFG++N    + I I+KNLRVC DCH+V KL+S + +R+ +VRD+ RFHHFK+G CS
Sbjct: 2534 LAVAFGVMNSAPGTTINIIKNLRVCGDCHTVIKLISKLVHRDFVVRDSKRFHHFKDGVCS 2593

Query: 685  CKDFW 689
            C D+W
Sbjct: 2594 CGDYW 2598



 Score =  239 bits (609), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 137/405 (33%), Positives = 207/405 (51%), Gaps = 50/405 (12%)

Query: 138 IKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDG 197
            K  +QIH  + + G   D+ +   L+ +Y+  G I     +F  + +    +WN +I  
Sbjct: 40  FKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRA 99

Query: 198 YVKKGEVEVAMKLFDEM------PDR---------------------------------D 218
               G  E A+ L+  M       D+                                 D
Sbjct: 100 NTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGD 159

Query: 219 LFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEI 278
           +F    L+D + KCG    A ++F +M  RN+VSW  +I+G +  GD+  A  +FD++  
Sbjct: 160 VFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPS 219

Query: 279 RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWM 338
           +++++W +MI GY  N +  EALEL + M   ++ PN+ T+VS + A   + +L  GR +
Sbjct: 220 KNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGI 279

Query: 339 HSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMA 398
           H Y +KN   +   LGT LI MYSKCGSI+ A+ VF  + +K +  W +MI  LG+HG+ 
Sbjct: 280 HDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLG 339

Query: 399 TQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGC 458
            +AL+LF++M R+ +KP AITFIGVL AC H   V +G  YF  M   YGI P  EHY C
Sbjct: 340 QEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYEC 399

Query: 459 LVDILCRTGYLEEA-KSTIE--SMPMRPNF--------VIWMSLL 492
           + ++  R+  L+EA KST E  S+   P+         V W  LL
Sbjct: 400 MTELYARSNNLDEAFKSTKEVGSLANSPSICFDARAKQVAWTQLL 444



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 168/348 (48%), Gaps = 42/348 (12%)

Query: 27  ILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPS 86
           +L+     K  +Q+HA  +++ L     ++ +L+ LY   H   + YA  +F +I Q+P 
Sbjct: 33  LLQNCKNFKHLRQIHAKIIRSGLSNDQLLTRKLIHLY-STH-GRIAYAILLFYQI-QNPC 89

Query: 87  LVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHG 146
              +NL+I+    N  S +AL L+ +++ + +  D FT P VIK      +I  GK +HG
Sbjct: 90  TFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHG 149

Query: 147 LVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEV 206
            + K GF  D FV ++L+  Y K G      +VF+ M  +++VSW  +I G +  G+++ 
Sbjct: 150 SLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQE 209

Query: 207 AMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS-------------- 252
           A ++FDE+P +++ SWT +++G+ +  + E A E+F RM   N+                
Sbjct: 210 ARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTE 269

Query: 253 -------------------------WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSM 287
                                      A+I+ Y K G +  A E+F+ M  + L TWNSM
Sbjct: 270 MGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSM 329

Query: 288 IAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKG 335
           I    ++G   EAL L   M   +V P+  T +  L A   +  + +G
Sbjct: 330 ITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEG 377



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 128/301 (42%), Gaps = 43/301 (14%)

Query: 256 MINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPN 315
           +I+ Y   G +  A  LF  ++     TWN +I    +NG   +AL L + M+   +  +
Sbjct: 65  LIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAAD 124

Query: 316 DATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFR 375
             T    + A      ++ G+ +H  ++K GF  D  +   LI  Y KCG    AL VF 
Sbjct: 125 KFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFE 184

Query: 376 A-------------------------------ISKKKVGHWTAMIVGLGMHGMATQALDL 404
                                           I  K V  WTAMI G   +    +AL+L
Sbjct: 185 KMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALEL 244

Query: 405 FNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIE---HYG-CLV 460
           F +M    + P   T + ++ AC+  G++  GR      I+DY I+  IE   + G  L+
Sbjct: 245 FKRMQAENIFPNEYTMVSLIKACTEMGILTLGRG-----IHDYAIKNCIEIGVYLGTALI 299

Query: 461 DILCRTGYLEEAKSTIESMPMRPNFVIWMSLLS--GARNHGNKDIGEYAANNLIKVAPDT 518
           D+  + G +++A    E+MP R +   W S+++  G    G + +  ++    + V PD 
Sbjct: 300 DMYSKCGSIKDAIEVFETMP-RKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDA 358

Query: 519 I 519
           I
Sbjct: 359 I 359



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 112/253 (44%), Gaps = 18/253 (7%)

Query: 186  KDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM 245
            +DL+    L +G V K  +    KL  +  ++  + + CL    S+   + +    FY  
Sbjct: 1891 RDLLKKFKLNEGKVAKTPMSTTTKL--DKDEKGSYPYACL----SESPSIYVCVVNFYEC 1944

Query: 246  PNRNLVSWNAMINGYMKAGDVDS--ACELFDDMEIRDLITWNSMIAGYELNGRFMEALEL 303
             +   +++N+++ G     +  S  A   +  ++  ++ +WNS+IA     G  +EAL  
Sbjct: 1945 FDG--ITYNSILFGVPSGREDHSNLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRA 2002

Query: 304  LETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSK 363
              ++    ++P  ++    + + + L  L  GR  H      GF  D  + + LI MYSK
Sbjct: 2003 FSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSK 2062

Query: 364  CGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRM--------GMKP 415
            CG ++ A  +F  I  + V  WT+MI G   +  A  AL LF               +  
Sbjct: 2063 CGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPL 2122

Query: 416  TAITFIGVLNACS 428
             ++  + VL+ACS
Sbjct: 2123 DSVVMVSVLSACS 2135



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 76/159 (47%), Gaps = 2/159 (1%)

Query: 336 RWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMH 395
           R +H+ I+++G   D +L   LI +YS  G I  A+ +F  I       W  +I    ++
Sbjct: 44  RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTIN 103

Query: 396 GMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEH 455
           G++ QAL L+  M   G+     TF  V+ AC++   ++ G+     +I  YG    +  
Sbjct: 104 GLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIK-YGFSGDVFV 162

Query: 456 YGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG 494
              L+D   + G+   A    E M +R N V W +++SG
Sbjct: 163 QNNLIDFYFKCGHTRFALKVFEKMRVR-NVVSWTTVISG 200



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 47/221 (21%), Positives = 97/221 (43%), Gaps = 16/221 (7%)

Query: 40   LHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVF 99
            +H   +K +L Y+  + + ++ +Y       +  A+  FDR ++  ++  +  ++  Y  
Sbjct: 2248 IHDQVIKMDLEYNVCVGTSIIDMYC--KCGRVEMAKKTFDR-MKEKNVKSWTAMVAGYGM 2304

Query: 100  NQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLV---FKLGFGFD 156
            + R+ EAL +F  ++   + P+  T   V+   +  G ++EG      +   + +  G +
Sbjct: 2305 HGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIE 2364

Query: 157  KFVLSSLVSMYAKFGEIDLGRRVFDAMDDK-DLVSWN-----CLIDGYVKKGEVEVAMKL 210
             +    +V ++ + G ++    +   M  K D V W      C I   V  GE+  A KL
Sbjct: 2365 HY--GCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEI-AAQKL 2421

Query: 211  FDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLV 251
            F+  PD   + +  L + ++  G+      +   M NR LV
Sbjct: 2422 FELDPDNCGY-YVLLSNLYADAGRWADVERMRMLMKNRQLV 2461


>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 262/639 (41%), Positives = 371/639 (58%), Gaps = 27/639 (4%)

Query: 67  HINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLP 126
           H  +++YA   F R +  P ++L+N +IK Y         + ++ D+    + P+ FT  
Sbjct: 46  HFGDVNYAHKAF-REVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFL 104

Query: 127 CVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK 186
            V+K          GKQIHG  FK GFG + FV +SLVSMYAKFG+I   R VFD + D+
Sbjct: 105 YVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDR 164

Query: 187 DLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKCGKVE---- 236
            +VSW  +I GYV+ G+   A+ +F EM      PD     W  LV   +    VE    
Sbjct: 165 TVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPD-----WIALVSVMTAYTNVEDLGQ 219

Query: 237 ------IAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAG 290
                 +  ++        ++S   M   Y K G V+ A   F+ ME  +LI WN+MI+G
Sbjct: 220 GKSIHGLVTKLGLEFEPDIVISLTTM---YAKRGLVEVARFFFNRMEKPNLILWNAMISG 276

Query: 291 YELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVD 350
           Y  NG   EA++L   M+  ++  +  T+ SA+ A A +  L   RW+  YI K+ +  D
Sbjct: 277 YANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDD 336

Query: 351 GVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCR 410
             + T LI MY+KCGSI  A  VF  ++ K V  W+ MI+G G+HG   +A+ L+N+M +
Sbjct: 337 TFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQ 396

Query: 411 MGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLE 470
            G+ P   TFIG+L AC ++GLV +G   F++M  D+GIEP  +HY C+VD+L R GYL 
Sbjct: 397 AGVCPNDGTFIGLLTACKNSGLVKEGWELFHLM-PDHGIEPHHQHYSCVVDLLGRAGYLN 455

Query: 471 EAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYA 530
           +A   I SMP++P   +W +LLS  + H    +GE AA  L  + P   G YV LSN+YA
Sbjct: 456 QAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGEIAAEQLFILDPYNTGHYVQLSNLYA 515

Query: 531 AAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRN 590
           +A  W +V+ VR MM ++G  KD G SSIE  G L  F VGD+SHP++ EI  +L  +  
Sbjct: 516 SAHLWTRVANVRLMMTQKGLNKDLGHSSIEINGNLETFQVGDRSHPKSKEIFEELDRLEK 575

Query: 591 KLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCN 650
           +LKAAG+VP    VL  + + +E E  L +HSERLA+A+G+I+    + +RI KNLR C 
Sbjct: 576 RLKAAGYVPHMESVLHDL-NHEEIEETLCHHSERLAVAYGIISTAPGTTLRITKNLRACI 634

Query: 651 DCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           +CHS  KL+S + +REII+RD  RFHHFK+G CSC DFW
Sbjct: 635 NCHSAIKLISKLVDREIIIRDAKRFHHFKDGVCSCGDFW 673



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 98/404 (24%), Positives = 185/404 (45%), Gaps = 15/404 (3%)

Query: 157 KFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM-- 214
           +F++   ++    FG+++   + F  + + D++ WN +I GY +K  V+  ++++ +M  
Sbjct: 34  RFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQI 93

Query: 215 ----PDRDLFSW---TCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVD 267
               P+   F +    C        GK +I  + F      N+   N++++ Y K G + 
Sbjct: 94  SQVHPNCFTFLYVLKACGGTSVEGIGK-QIHGQTFKYGFGSNVFVQNSLVSMYAKFGQIS 152

Query: 268 SACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVA 327
            A  +FD +  R +++W S+I+GY  NG  MEAL + + M   +V P+   LVS ++A  
Sbjct: 153 YARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYT 212

Query: 328 GLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTA 387
            +  L +G+ +H  + K G   +  +   L  MY+K G +E A   F  + K  +  W A
Sbjct: 213 NVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNA 272

Query: 388 MIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDY 447
           MI G   +G   +A+ LF +M    ++  +IT    + A +  G +   R     +    
Sbjct: 273 MISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSE 332

Query: 448 GIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIW--MSLLSGARNHGNKDIGE 505
             + T  + G L+D+  + G +  A+   + +  + + V+W  M +  G   HG + I  
Sbjct: 333 YRDDTFVNTG-LIDMYAKCGSIYLARCVFDRVADK-DVVLWSVMIMGYGLHGHGQEAICL 390

Query: 506 YAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRG 549
           Y       V P+  G ++ L      +G   +  E+  +M   G
Sbjct: 391 YNEMKQAGVCPND-GTFIGLLTACKNSGLVKEGWELFHLMPDHG 433


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 251/605 (41%), Positives = 358/605 (59%), Gaps = 20/605 (3%)

Query: 103  SHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSS 162
            S EAL  F  L    L+P   + PC IK  + L  +  G+  H   F  GF  D FV S+
Sbjct: 1123 SVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSA 1182

Query: 163  LVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL--- 219
            L+ MY+K G++   R +FD +  +++VSW  +I GYV+  + + A+ LF +  + +    
Sbjct: 1183 LIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVE 1242

Query: 220  ------FSWTCLVDGFSKCGKVE-------IAREIFYRMPNRNLVSWNAMINGYMKAGDV 266
                       +V   S C +V        +   +  +  + ++   N +++ Y K G  
Sbjct: 1243 DGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQP 1302

Query: 267  DSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETML--IGDVLPNDATLVSALS 324
              + ++FD ME +D I+WNSMIA Y  +G   EALE+   M+  +G V  N  TL + L 
Sbjct: 1303 LVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVG-VRYNAVTLSAVLL 1361

Query: 325  AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGH 384
            A A    L  G+ +H  ++K     +  +GT +I MY KCG +E A   F  + +K V  
Sbjct: 1362 ACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKS 1421

Query: 385  WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMI 444
            WTAM+ G GMHG A +ALD+F KM R G+KP  ITF+ VL ACSHAGLV +G  +FN M 
Sbjct: 1422 WTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMK 1481

Query: 445  NDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIG 504
            + Y IEP IEHYGC+VD+  R G L EA + I+ M M+P+FV+W SLL   R H N D+G
Sbjct: 1482 HKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLG 1541

Query: 505  EYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGV 564
            E AA  L ++ PD  G YV+LSN+YA AG+W  V  +R +MK R   K PG S +E +G 
Sbjct: 1542 EIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQLVKPPGFSLVELKGR 1601

Query: 565  LHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSER 624
            +H F+VGDK HP  + I+  L ++  +L+  G+VP+ T VL  + D++EKE  L  HSE+
Sbjct: 1602 VHVFLVGDKEHPHHEMIYKYLEKLTLELQKIGYVPNMTSVLHDV-DEEEKEIILRVHSEK 1660

Query: 625  LAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCS 684
            LA+AFG++N    + I I+KNLRVC DCH+V KL+S + +R+ +VRD+ RFHHFK+G CS
Sbjct: 1661 LAVAFGVMNSAPGTTINIIKNLRVCGDCHTVIKLISKLVHRDFVVRDSKRFHHFKDGVCS 1720

Query: 685  CKDFW 689
            C D+W
Sbjct: 1721 CGDYW 1725



 Score =  238 bits (606), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 131/379 (34%), Positives = 199/379 (52%), Gaps = 40/379 (10%)

Query: 139 KEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGY 198
           K  +QIH  + + G   D+ +   L+ +Y+  G I     +F  + +    +WN +I   
Sbjct: 41  KHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRAN 100

Query: 199 VKKGEVEVAMKLFDEM------PDR---------------------------------DL 219
              G  E A+ L+  M       D+                                 D+
Sbjct: 101 TINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDV 160

Query: 220 FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIR 279
           F    L+D + KCG    A ++F +M  RN+VSW  +I+G +  GD+  A  +FD++  +
Sbjct: 161 FVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSK 220

Query: 280 DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMH 339
           ++++W +MI GY  N +  EALEL + M   ++ PN+ T+VS + A   + +L  GR +H
Sbjct: 221 NVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIH 280

Query: 340 SYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMAT 399
            Y +KN   +   LGT LI MYSKCGSI+ A+ VF  + +K +  W +MI  LG+HG+  
Sbjct: 281 DYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQ 340

Query: 400 QALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCL 459
           +AL+LF++M R+ +KP AITFIGVL AC H   V +G  YF  M   YGI P  EHY C+
Sbjct: 341 EALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECM 400

Query: 460 VDILCRTGYLEEA-KSTIE 477
            ++  R+  L+EA KST E
Sbjct: 401 TELYARSNNLDEAFKSTKE 419



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 168/348 (48%), Gaps = 42/348 (12%)

Query: 27  ILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPS 86
           +L+     K  +Q+HA  +++ L     ++ +L+ LY   H   + YA  +F +I Q+P 
Sbjct: 33  LLQNCKNFKHLRQIHAKIIRSGLSNDQLLTRKLIHLY-STH-GRIAYAILLFYQI-QNPC 89

Query: 87  LVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHG 146
              +NL+I+    N  S +AL L+ +++ + +  D FT P VIK      +I  GK +HG
Sbjct: 90  TFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHG 149

Query: 147 LVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEV 206
            + K GF  D FV ++L+  Y K G      +VF+ M  +++VSW  +I G +  G+++ 
Sbjct: 150 SLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQE 209

Query: 207 AMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS-------------- 252
           A ++FDE+P +++ SWT +++G+ +  + E A E+F RM   N+                
Sbjct: 210 ARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTE 269

Query: 253 -------------------------WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSM 287
                                      A+I+ Y K G +  A E+F+ M  + L TWNSM
Sbjct: 270 MGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSM 329

Query: 288 IAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKG 335
           I    ++G   EAL L   M   +V P+  T +  L A   +  + +G
Sbjct: 330 ITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEG 377



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 128/301 (42%), Gaps = 43/301 (14%)

Query: 256 MINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPN 315
           +I+ Y   G +  A  LF  ++     TWN +I    +NG   +AL L + M+   +  +
Sbjct: 65  LIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAAD 124

Query: 316 DATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFR 375
             T    + A      ++ G+ +H  ++K GF  D  +   LI  Y KCG    AL VF 
Sbjct: 125 KFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFE 184

Query: 376 A-------------------------------ISKKKVGHWTAMIVGLGMHGMATQALDL 404
                                           I  K V  WTAMI G   +    +AL+L
Sbjct: 185 KMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALEL 244

Query: 405 FNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIE---HYG-CLV 460
           F +M    + P   T + ++ AC+  G++  GR      I+DY I+  IE   + G  L+
Sbjct: 245 FKRMQAENIFPNEYTMVSLIKACTEMGILTLGRG-----IHDYAIKNCIEIGVYLGTALI 299

Query: 461 DILCRTGYLEEAKSTIESMPMRPNFVIWMSLLS--GARNHGNKDIGEYAANNLIKVAPDT 518
           D+  + G +++A    E+MP R +   W S+++  G    G + +  ++    + V PD 
Sbjct: 300 DMYSKCGSIKDAIEVFETMP-RKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDA 358

Query: 519 I 519
           I
Sbjct: 359 I 359



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 70/154 (45%), Gaps = 8/154 (5%)

Query: 283  TWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYI 342
            +WNS+IA     G  +EAL    ++    ++P  ++    + + + L  L  GR  H   
Sbjct: 1109 SWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQA 1168

Query: 343  VKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQAL 402
               GF  D  + + LI MYSKCG ++ A  +F  I  + V  WT+MI G   +  A  AL
Sbjct: 1169 FVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNAL 1228

Query: 403  DLFNKMCRM--------GMKPTAITFIGVLNACS 428
             LF               +   ++  + VL+ACS
Sbjct: 1229 LLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACS 1262



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 2/165 (1%)

Query: 336 RWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMH 395
           R +H+ I+++G   D +L   LI +YS  G I  A+ +F  I       W  +I    ++
Sbjct: 44  RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTIN 103

Query: 396 GMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEH 455
           G++ QAL L+  M   G+     TF  V+ AC++   ++ G+     +I  YG    +  
Sbjct: 104 GLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIK-YGFSGDVFV 162

Query: 456 YGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGN 500
              L+D   + G+   A    E M +R N V W +++SG  + G+
Sbjct: 163 QNNLIDFYFKCGHTRFALKVFEKMRVR-NVVSWTTVISGLISCGD 206



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 64/129 (49%), Gaps = 2/129 (1%)

Query: 374  FRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLV 433
            ++ + K  V  W ++I  L   G + +AL  F+ + ++G+ PT  +F   + +CS    +
Sbjct: 1099 YKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDL 1158

Query: 434  NDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLS 493
              GR         +G E  +     L+D+  + G L++A++  + +P+R N V W S+++
Sbjct: 1159 VSGRMSHQQAFV-FGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLR-NVVSWTSMIT 1216

Query: 494  GARNHGNKD 502
            G   +   D
Sbjct: 1217 GYVQNEQAD 1225



 Score = 45.4 bits (106), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 47/221 (21%), Positives = 97/221 (43%), Gaps = 16/221 (7%)

Query: 40   LHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVF 99
            +H   +K +L Y+  + + ++ +Y       +  A+  FDR ++  ++  +  ++  Y  
Sbjct: 1375 IHDQVIKMDLEYNVCVGTSIIDMYCK--CGRVEMAKKTFDR-MKEKNVKSWTAMVAGYGM 1431

Query: 100  NQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLV---FKLGFGFD 156
            + R+ EAL +F  ++   + P+  T   V+   +  G ++EG      +   + +  G +
Sbjct: 1432 HGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIE 1491

Query: 157  KFVLSSLVSMYAKFGEIDLGRRVFDAMDDK-DLVSWN-----CLIDGYVKKGEVEVAMKL 210
             +    +V ++ + G ++    +   M  K D V W      C I   V  GE+  A KL
Sbjct: 1492 HY--GCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEI-AAQKL 1548

Query: 211  FDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLV 251
            F+  PD   + +  L + ++  G+      +   M NR LV
Sbjct: 1549 FELDPDNCGY-YVLLSNLYADAGRWADVERMRMLMKNRQLV 1588


>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Vitis vinifera]
          Length = 662

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 247/627 (39%), Positives = 359/627 (57%), Gaps = 44/627 (7%)

Query: 9   SSPIH-ALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPH 67
           S P+H +   H   +    +LK   + +  +Q+    ++T         ++ +    DP 
Sbjct: 19  SKPLHLSTSSHFTKKSCIFLLKNCKSMQHLKQIQTQILRTGFHQSGDTLNKFMVCCTDPS 78

Query: 68  INNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPC 127
           I NLHYA  IF+ I   P L +YNL+IK +  N    +A+ LF  L +  L PDNFT P 
Sbjct: 79  IGNLHYAERIFNYI-DIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPF 137

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD 187
           V K    LG ++EG++++G V K G  FD +V +SL+ MYA+ G +   R+VF+ M  +D
Sbjct: 138 VFKAIGCLGEVREGEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRD 197

Query: 188 LVSWNCLIDGYVKKGEVEVAMKLFDEMPD------------------------------- 216
           +VSWN LI GYVK    E A+ +F  M                                 
Sbjct: 198 VVSWNVLISGYVKCRRYEDAVDVFRRMQQQSSLRPNEATVVSTLSACIALKMLELGKEIH 257

Query: 217 ---RDLFSWT-----CLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDS 268
              R+   +T      LVD + KCG + IAREIF  MP + ++ W +M++GY+  G +D 
Sbjct: 258 RYVREQLGFTIKIGNALVDMYCKCGHLSIAREIFNDMPIKTVICWTSMVSGYVNCGQLDE 317

Query: 269 ACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAG 328
           A ELF+   +RD++ W +MI GY    RF +A+ L   M I  V P+  TLV+ L+  A 
Sbjct: 318 ARELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLTGCAQ 377

Query: 329 LAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAM 388
           L  L +G+W+H YI +N  ++D V+GT LI+MY+KCG IE +L +F  + +K    WT++
Sbjct: 378 LGTLEQGKWIHGYIDENKIMIDAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSI 437

Query: 389 IVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYG 448
           I GL M+G  ++AL+LF +M + G+KP  ITFIGVL+ACSH GLV +GR++F  M   Y 
Sbjct: 438 ICGLAMNGKTSKALELFAEMVQTGVKPDDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQ 497

Query: 449 IEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVI---WMSLLSGARNHGNKDIGE 505
           IEP +EHYGCL+D+L R G L+EA+  IE  P   N VI   + +LLS  R HGN ++GE
Sbjct: 498 IEPKLEHYGCLIDLLGRAGQLDEAEELIEKSPNVNNEVIVPLYGALLSACRTHGNVEMGE 557

Query: 506 YAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVL 565
             A  L+ +       + +L+NIYA+A +W+ V++VR  MK  G +K PG SS+E  G++
Sbjct: 558 RVAKRLVGIESGDSSVHTLLANIYASADRWEDVTKVRRKMKDLGVKKVPGCSSVEVNGIV 617

Query: 566 HEFVVGDKSHPQTDEIHSKLSEMRNKL 592
           HEF+VGD SHP+  EI+S L  +   L
Sbjct: 618 HEFLVGDASHPEMREIYSMLDSIAKPL 644


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 267/731 (36%), Positives = 404/731 (55%), Gaps = 78/731 (10%)

Query: 33  THKETQ--QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLY 90
           TH  T+   LH+  +KT     + + + L+S Y    + ++ YA  +FD+ + HP+L  +
Sbjct: 22  THNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAK--LGSIPYACKVFDQ-MPHPNLYSW 78

Query: 91  NLLIKCYVFNQRSHEALTLF--------------------CDLLDRFLLPDNF------- 123
           N ++  Y    R  E   LF                    C L+ + +   N        
Sbjct: 79  NTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKNDGS 138

Query: 124 ------TLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGR 177
                 T   ++  A++ G +K G+QIHG V K GF    FV S LV MY+K G I   R
Sbjct: 139 FNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCAR 198

Query: 178 RVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEI 237
           +VFD + +K++V +N LI G ++ G VE + +LF EM +RD  SWT ++ GF++ G    
Sbjct: 199 KVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRD 258

Query: 238 AREIFYRMPNRNL---------------------------------------VSWNAMIN 258
           A +IF  M   NL                                          +A+++
Sbjct: 259 AIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVD 318

Query: 259 GYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDAT 318
            Y K  ++ SA  +F  M  +++++W +M+ GY  NG   EA++    M    + P+D T
Sbjct: 319 MYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFT 378

Query: 319 LVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS 378
           L S +S+ A LA L +G   H+  + +G +    +   L+ +Y KCGSIE +  +F  IS
Sbjct: 379 LGSVISSCANLASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEIS 438

Query: 379 KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR 438
            K    WTA++ G    G A + + LF  M   G+KP  +TFIGVL+ACS AGLV  G +
Sbjct: 439 FKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQ 498

Query: 439 YFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNH 498
            F  MIN++GI P  +HY C++D+  R G +EEA++ I  MP  P+ + W +LLS  R +
Sbjct: 499 IFESMINEHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKMPFSPDAISWATLLSSCRFY 558

Query: 499 GNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSS 558
           GN DIG++AA  L+++ P     YV+LS++YAA G+W++V+ +R+ M+ +G RK+PG S 
Sbjct: 559 GNMDIGKWAAEFLMELDPHNTASYVLLSSVYAAKGKWEEVARLRKDMRDKGLRKEPGCSW 618

Query: 559 IEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAEL 618
           I+++  +H F   DKS+P +D+I+S+L ++  K+   G+VPD   VL  + D  EK   L
Sbjct: 619 IKYKNQVHVFSADDKSNPFSDQIYSELEKLNYKMIKEGYVPDMNSVLHDVGDS-EKIKML 677

Query: 619 ENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHF 678
            +HSE+LAIAFGL+ +    PIR+VKNLRVC+DCH+ TK +S I NREI+VRD +RFH F
Sbjct: 678 NHHSEKLAIAFGLLFIPPGLPIRVVKNLRVCSDCHNATKYISKITNREILVRDTARFHLF 737

Query: 679 KNGSCSCKDFW 689
           K+G+CSC DFW
Sbjct: 738 KDGTCSCGDFW 748



 Score =  192 bits (487), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 134/505 (26%), Positives = 241/505 (47%), Gaps = 62/505 (12%)

Query: 90  YNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVF 149
           Y  L+K         +A  L   ++     P+ F L  +I   A+LG+I    ++     
Sbjct: 12  YCALLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKV----- 66

Query: 150 KLGFGFDK------FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGE 203
                FD+      +  ++++S Y+K G +     +FDAM  +D VSWN LI GY   G 
Sbjct: 67  -----FDQMPHPNLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGL 121

Query: 204 VEVAMKLFDEMPDRD-----------------------------------------LFSW 222
           +  ++K ++ M   D                                         +F  
Sbjct: 122 IYQSVKAYNLMLKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVG 181

Query: 223 TCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLI 282
           + LVD +SK G +  AR++F  +P +N+V +N +I G M+ G V+ +  LF +M  RD I
Sbjct: 182 SPLVDMYSKMGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSI 241

Query: 283 TWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYI 342
           +W SMI G+  NG   +A+++   M + ++  +  T  S L+A  G+  L +G+ +H+YI
Sbjct: 242 SWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYI 301

Query: 343 VKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQAL 402
           ++  +  +  + + L+ MY KC +I+SA  VF+ ++ K V  WTAM+VG G +G + +A+
Sbjct: 302 IRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAV 361

Query: 403 DLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDI 462
             F+ M + G++P   T   V+++C++   + +G ++    +   G+   I     LV +
Sbjct: 362 KTFSDMQKYGIEPDDFTLGSVISSCANLASLEEGAQFHARALTS-GLISFITVSNALVTL 420

Query: 463 LCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG--NKDIGEYAANNLIKVAPDTIG 520
             + G +E++      +  +   V W +L+SG    G  N+ IG + +     + PD + 
Sbjct: 421 YGKCGSIEDSHRLFNEISFKDE-VTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVT 479

Query: 521 CYVVLSNIYAAAGQWDKVSEVREMM 545
              VLS   + AG  +K +++ E M
Sbjct: 480 FIGVLSAC-SRAGLVEKGNQIFESM 503


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 264/705 (37%), Positives = 409/705 (58%), Gaps = 31/705 (4%)

Query: 7   QHSSPIHALQQHLPSRLHWNILKFSSTHK---------ETQQLHALSVKTNLIYHSGISS 57
            +   I+  +Q L   +  N   FSS  K         E +Q+H L  K     ++ + +
Sbjct: 231 NYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVN 290

Query: 58  RLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRF 117
            L+S Y       +  A+ +FD  L    ++ +N +I  YV N      + +F  +L   
Sbjct: 291 SLISFYFVGR--KVRCAQKLFDE-LTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFG 347

Query: 118 LLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVL--SSLVSMYAKFGEIDL 175
           +  D  T+  V    A +G +  GK +H    K     D+ V   ++L+ MY+K G+++ 
Sbjct: 348 VDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAA-TLDREVRFNNTLLDMYSKCGDLNS 406

Query: 176 GRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR----DLFSWT-----CLV 226
             RVF+ MD+K +VSW  +I GYV++G  + A+KLFDEM  R    D+++ T     C +
Sbjct: 407 AIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAI 466

Query: 227 DGFSKCGKV--EIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITW 284
           +G  K GK+  +  RE    +   + VS NA+ + Y K G +  A ++F  M+ +D+I+W
Sbjct: 467 NGNLKSGKIVHDYIRE--NNLETNSFVS-NALTDMYAKCGSMKDAHDVFSHMKKKDVISW 523

Query: 285 NSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVK 344
           N+MI GY  N    EAL L   M   +  P+  T+   L A A LA L+KGR +H Y ++
Sbjct: 524 NTMIGGYTKNSLPNEALTLFAEMQ-RESKPDGTTVACILPACASLAALDKGREIHGYALR 582

Query: 345 NGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDL 404
           NG+  D  +   ++ MY KCG +  A ++F  I  K +  WT MI G GMHG  ++A++ 
Sbjct: 583 NGYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINT 642

Query: 405 FNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILC 464
           FN+M   G++P  ++FI +L ACSH+GL+++G + FN+M  +  IEP +EHY C+VD+L 
Sbjct: 643 FNQMRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKECQIEPNLEHYACMVDLLA 702

Query: 465 RTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVV 524
           RTG L +A   I++MP++P+  IW +LL G R H +  + E  A  + ++ P+  G YV+
Sbjct: 703 RTGNLVKAHKFIKAMPIKPDATIWGALLCGCRIHHDVKLAEKVAERIFELEPENTGYYVL 762

Query: 525 LSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSK 584
           L+NIYA A +W++V ++R+ + +RG +K+PG S IE +G ++ FV GD S PQ  +I   
Sbjct: 763 LANIYAEAEKWEEVQKLRKKIGQRGLKKNPGCSWIEIKGKINIFVAGDCSKPQAKKIELL 822

Query: 585 LSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVK 644
           L  +R+K+K  G+ P T   LL   D++EKE  L  HSE+LA+AFG++N+     IR+ K
Sbjct: 823 LKRLRSKMKEEGYSPKTAYALLN-ADEREKEVALCGHSEKLAMAFGMLNLPPGKTIRVTK 881

Query: 645 NLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           NLRVC DCH + K +S   +REII+RD+SRFHHFK+GSCSC+ +W
Sbjct: 882 NLRVCGDCHEMAKFMSKSASREIILRDSSRFHHFKDGSCSCRGYW 926



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 119/442 (26%), Positives = 214/442 (48%), Gaps = 25/442 (5%)

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD 187
           +++  A   +I++G+++  ++   G   D  +   LV MY K G++  GR VFD + +  
Sbjct: 156 ILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVFDKLSESK 215

Query: 188 LVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFY 243
           +  WN +I  Y   G    ++ LF +M +  +    ++++ ++  F+   +VE  R++  
Sbjct: 216 IFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEGRQVHG 275

Query: 244 RMPNRNLVSWNAMING----YMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFME 299
            +      S+N ++N     Y     V  A +LFD++  RD+I+WNSMI+GY  NG    
Sbjct: 276 LICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGLDDR 335

Query: 300 ALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV-LGTLLI 358
            +E+   ML+  V  + AT+V+   A A +  L  G+ +HSY +K   +   V     L+
Sbjct: 336 GIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLL 395

Query: 359 QMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI 418
            MYSKCG + SA+ VF  + +K V  WT+MI G    G++  A+ LF++M   G+ P   
Sbjct: 396 DMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVY 455

Query: 419 TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEH----YGCLVDILCRTGYLEEAKS 474
               +LNAC+  G +  G+     +++DY  E  +E        L D+  + G +++A  
Sbjct: 456 AVTSILNACAINGNLKSGK-----IVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHD 510

Query: 475 TIESMPMRPNFVIWMSLLSG-ARNHGNKDIGEYAANNLIKVAPD--TIGCYVVLSNIYAA 531
               M  + + + W +++ G  +N    +     A    +  PD  T+ C +      A+
Sbjct: 511 VFSHMK-KKDVISWNTMIGGYTKNSLPNEALTLFAEMQRESKPDGTTVACILPAC---AS 566

Query: 532 AGQWDKVSEVREMMKKRGFRKD 553
               DK  E+     + G+ +D
Sbjct: 567 LAALDKGREIHGYALRNGYSED 588



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 85/190 (44%), Gaps = 14/190 (7%)

Query: 321 SALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKK 380
           S L   A    +  GR + S I  +G ++DG+LG  L+ MY KCG ++    VF  +S+ 
Sbjct: 155 SILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVFDKLSES 214

Query: 381 KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYF 440
           K+  W  MI      G   ++++LF +M  +G+KP + TF  +L   +    V +GR+  
Sbjct: 215 KIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEGRQVH 274

Query: 441 NMM----INDYG--IEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG 494
            ++     N Y   +   I  Y     + C     +E            + + W S++SG
Sbjct: 275 GLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDR--------DVISWNSMISG 326

Query: 495 ARNHGNKDIG 504
              +G  D G
Sbjct: 327 YVKNGLDDRG 336


>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
 gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
          Length = 679

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 265/681 (38%), Positives = 388/681 (56%), Gaps = 48/681 (7%)

Query: 15  LQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDP--HINNLH 72
           L+ H    +H +    +STHK  +Q+H    + N+      SSR+++ ++     +N++ 
Sbjct: 41  LETHFIDLIHAS----NSTHK-LRQIHGQLYRCNVFS----SSRVVTQFISSCSSLNSVD 91

Query: 73  YARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGA 132
           YA SIF R  +  +  L+N LI+    N R   +++ F  +L   + PD  T P V+K A
Sbjct: 92  YAISIFQR-FELKNSYLFNALIRGLAENSRFESSISFFVLMLKWKISPDRLTFPFVLKSA 150

Query: 133 ARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWN 192
           A L     G+ +H  + K G  FD FV  SLV MY                         
Sbjct: 151 AALSNGGVGRALHCGILKFGLEFDSFVRVSLVDMY------------------------- 185

Query: 193 CLIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREIFYRMPNR 248
                 VK  E+  A+K+FDE P+      +  W  L+ G+ + G +  A E+F  MP +
Sbjct: 186 ------VKVEELGSALKVFDESPESVKNGSVLIWNVLIHGYCRMGDLVKATELFDSMPKK 239

Query: 249 NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETML 308
           +  SWN++ING+MK GD+  A ELF  M  +++++W +M+ G+  NG   +ALE    ML
Sbjct: 240 DTGSWNSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFSQNGDPEKALETFFCML 299

Query: 309 IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIE 368
                PND T+VSALSA A +  L+ G  +H+Y+  NGF ++ V+GT L+ MY+KCG+IE
Sbjct: 300 EEGARPNDYTIVSALSACAKIGALDAGLRIHNYLSGNGFKLNLVIGTALVDMYAKCGNIE 359

Query: 369 SALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACS 428
            A  VF    +K +  W+ MI G  +HG   +AL  F  M   G KP ++ F+ VLNACS
Sbjct: 360 HAEKVFHETKEKGLLIWSVMIWGWAIHGHFRKALQYFEWMKFTGTKPDSVVFLAVLNACS 419

Query: 429 HAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIW 488
           H+G VN+G ++F+ M   Y IEP+++HY  +VD+L R G L+EA   I +MP+ P+FV+W
Sbjct: 420 HSGQVNEGLKFFDNMRRGYLIEPSMKHYTLVVDMLGRAGRLDEALKFIRAMPITPDFVVW 479

Query: 489 MSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548
            +L    R H N ++ E A+  L+++ P   G YV LSN YA+ G+WD    VR  M+  
Sbjct: 480 GALFCACRTHKNVEMAELASKKLLQLEPKHPGSYVFLSNAYASVGRWDDAERVRVSMRDH 539

Query: 549 GFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCI 608
           G  KDPG S IE    LH FV GD +H +  EI+SKL E+    +  G+  +   VL  I
Sbjct: 540 GAHKDPGWSFIEVDHKLHRFVAGDNTHNRAVEIYSKLDEISASAREKGYTKEIECVLHNI 599

Query: 609 EDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREII 668
           E+++++EA L  HSE+LA+AFG+++ +  + +RIVKNLRVC DCHS  K  S +  REII
Sbjct: 600 EEEEKEEA-LGYHSEKLALAFGIVSTRPGTTVRIVKNLRVCVDCHSFMKYASKMSKREII 658

Query: 669 VRDNSRFHHFKNGSCSCKDFW 689
           +RD  RFHHF +G CSC D+W
Sbjct: 659 LRDMKRFHHFNDGVCSCGDYW 679


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 259/666 (38%), Positives = 382/666 (57%), Gaps = 10/666 (1%)

Query: 31  SSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLY 90
           SS  K   Q+HA  +K+  +    +++ L+++YV      +  A  IF   L+   +V +
Sbjct: 173 SSFIKLGMQIHAAILKSGRVLDVYVANALVAMYV--RFGKMPEAAVIFGN-LEGKDIVTW 229

Query: 91  NLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFK 150
           N ++  ++ N    EAL  F DL +  L PD  ++  +I  + RLG +  GK+IH    K
Sbjct: 230 NSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIK 289

Query: 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
            GF  +  V ++L+ MYAK   +  G R FD M  KDL+SW     GY +      A++L
Sbjct: 290 NGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALEL 349

Query: 211 FDEMP----DRD---LFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKA 263
             ++     D D   + S      G +  GK++       R    + V  N +I+ Y + 
Sbjct: 350 LRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTIRGGLSDPVLQNTIIDVYGEC 409

Query: 264 GDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSAL 323
           G +D A  +F+ +E +D+++W SMI+ Y  NG   +ALE+  +M    + P+  TLVS L
Sbjct: 410 GIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSIL 469

Query: 324 SAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVG 383
           SAV  L+ L KG+ +H +I++ GF+++G +   L+ MY++CGS+E A  +F     + + 
Sbjct: 470 SAVCSLSTLKKGKEIHGFIIRKGFILEGSISNTLVDMYARCGSVEDAYKIFTCTKNRNLI 529

Query: 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMM 443
            WTAMI   GMHG    A++LF +M    + P  ITF+ +L ACSH+GLVN+G+ +  +M
Sbjct: 530 LWTAMISAYGMHGYGEAAVELFMRMKDEKIIPDHITFLALLYACSHSGLVNEGKSFLEIM 589

Query: 444 INDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDI 503
             +Y +EP  EHY CLVD+L R   LEEA   ++SM   P   +W +LL   R H NK+I
Sbjct: 590 KCEYQLEPWPEHYTCLVDLLGRRNCLEEAYQIVKSMQNEPTPEVWCALLGACRIHSNKEI 649

Query: 504 GEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRG 563
           GE AA  L+++  D  G YV++SN++AA G+W  V EVR  MK  G  K+PG S IE   
Sbjct: 650 GEVAAEKLLELDLDNPGNYVLVSNVFAANGRWKDVEEVRMRMKGSGLTKNPGCSWIEVGN 709

Query: 564 VLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSE 623
            +H F+  DK HP+ D+I+ KL+++  KLK  G     T+ +L    ++EK   L  HSE
Sbjct: 710 KIHAFLSRDKLHPECDKIYQKLAQVTEKLKREGGYVAQTKFVLHNVGEEEKVQMLYGHSE 769

Query: 624 RLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSC 683
           RLAIA+GL+     +PIR+ KNLRVC DCHS   L+S  + RE+IVRD SRFHHFK+G C
Sbjct: 770 RLAIAYGLLATAEGTPIRVTKNLRVCGDCHSFCTLVSRFFERELIVRDASRFHHFKDGMC 829

Query: 684 SCKDFW 689
           SC DFW
Sbjct: 830 SCGDFW 835



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 151/525 (28%), Positives = 269/525 (51%), Gaps = 30/525 (5%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYV 98
           ++H L++K        + + L++LY     N+++ AR +FDR+     +V +N +I  Y 
Sbjct: 79  EIHGLAIKYGCDSFVFVVNSLVALY--AKCNDINGARKLFDRMYVRNDVVSWNSIISAYS 136

Query: 99  FNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKF 158
            N    EAL LF ++L   ++ + +T    ++       IK G QIH  + K G   D +
Sbjct: 137 GNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVLDVY 196

Query: 159 VLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRD 218
           V ++LV+MY +FG++     +F  ++ KD+V+WN ++ G+++ G    A++ F ++ + D
Sbjct: 197 VANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNAD 256

Query: 219 L----FSWTCLVDGFSKCGKVEIAREIF-YRMPN---RNLVSWNAMINGYMKAGDVDSAC 270
           L     S   ++    + G +   +EI  Y + N    N++  N +I+ Y K   +    
Sbjct: 257 LKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGG 316

Query: 271 ELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLV-SALSAVAGL 329
             FD M  +DLI+W +  AGY  N  +++ALELL  + + + +  DAT++ S L A  GL
Sbjct: 317 RAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQM-EGMDVDATMIGSILLACRGL 375

Query: 330 AVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMI 389
             L K + +H Y ++ G + D VL   +I +Y +CG I+ A+ +F +I  K V  WT+MI
Sbjct: 376 NCLGKIKEIHGYTIRGG-LSDPVLQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMI 434

Query: 390 VGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIND-YG 448
                +G+A +AL++F+ M   G++P  +T + +L+A      +  G+     +I   + 
Sbjct: 435 SCYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFI 494

Query: 449 IEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAA 508
           +E +I +   LVD+  R G +E+A         R N ++W +++S    HG    GE A 
Sbjct: 495 LEGSISN--TLVDMYARCGSVEDAYKIFTCTKNR-NLILWTAMISAYGMHG---YGEAAV 548

Query: 509 NNLI-----KVAPDTIGCYVVLSNIYAA--AGQWDKVSEVREMMK 546
              +     K+ PD I     L+ +YA   +G  ++     E+MK
Sbjct: 549 ELFMRMKDEKIIPDHI---TFLALLYACSHSGLVNEGKSFLEIMK 590



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 132/489 (26%), Positives = 238/489 (48%), Gaps = 18/489 (3%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           A  IFD+ +   S+  +N ++  YV N  +  AL ++ ++    +  D++T P ++K   
Sbjct: 11  AEMIFDK-MSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTFPVLLKACG 69

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK-DLVSWN 192
            +  +  G +IHGL  K G     FV++SLV++YAK  +I+  R++FD M  + D+VSWN
Sbjct: 70  IVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWN 129

Query: 193 CLIDGYVKKGEVEVAMKLFDEMPDRDLFSWT---------CLVDGFSKCGKVEIAREIFY 243
            +I  Y   G    A+ LF EM    + + T         C    F K G ++I   I  
Sbjct: 130 SIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLG-MQIHAAILK 188

Query: 244 RMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALEL 303
                ++   NA++  Y++ G +  A  +F ++E +D++TWNSM+ G+  NG + EALE 
Sbjct: 189 SGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEF 248

Query: 304 LETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSK 363
              +   D+ P+  +++S + A   L  L  G+ +H+Y +KNGF  + ++G  LI MY+K
Sbjct: 249 FYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAK 308

Query: 364 CGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGV 423
           C  +      F  ++ K +  WT    G   +    QAL+L  ++   GM   A     +
Sbjct: 309 CCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSI 368

Query: 424 LNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRP 483
           L AC     +   +      I     +P +++   ++D+    G ++ A    ES+  + 
Sbjct: 369 LLACRGLNCLGKIKEIHGYTIRGGLSDPVLQN--TIIDVYGECGIIDYAVRIFESIECK- 425

Query: 484 NFVIWMSLLSGARNHG--NKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEV 541
           + V W S++S   ++G  NK +  +++     + PD +    +LS +  +     K  E+
Sbjct: 426 DVVSWTSMISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAV-CSLSTLKKGKEI 484

Query: 542 REMMKKRGF 550
              + ++GF
Sbjct: 485 HGFIIRKGF 493



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 164/341 (48%), Gaps = 17/341 (4%)

Query: 166 MYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP----DRDLFS 221
           MY K G +     +FD M ++ + +WN ++ GYV  GE   A++++ EM       D ++
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 222 WTCLVDGFSKCGKVE---IAREIFYRMPNRNLVSW----NAMINGYMKAGDVDSACELFD 274
           +  L+     CG VE      EI          S+    N+++  Y K  D++ A +LFD
Sbjct: 61  FPVLLKA---CGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFD 117

Query: 275 DMEIR-DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLN 333
            M +R D+++WNS+I+ Y  NG   EAL L   ML   V+ N  T  +AL A    + + 
Sbjct: 118 RMYVRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIK 177

Query: 334 KGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLG 393
            G  +H+ I+K+G V+D  +   L+ MY + G +  A  +F  +  K +  W +M+ G  
Sbjct: 178 LGMQIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFI 237

Query: 394 MHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTI 453
            +G+ ++AL+ F  +    +KP  ++ I ++ A    G + +G+      I + G +  I
Sbjct: 238 QNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKN-GFDSNI 296

Query: 454 EHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG 494
                L+D+  +   +       + M  + + + W +  +G
Sbjct: 297 LVGNTLIDMYAKCCCMSYGGRAFDLMAHK-DLISWTTAAAG 336



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 111/246 (45%), Gaps = 13/246 (5%)

Query: 260 YMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATL 319
           Y K G V  A  +FD M  R + TWN+M+ GY  NG  + ALE+   M    V  +  T 
Sbjct: 2   YGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTF 61

Query: 320 VSALSAVAGLAVLNKGRWMHSYIVKNG-----FVVDGVLGTLLIQMYSKCGSIESALTVF 374
              L A   +  L  G  +H   +K G     FVV+      L+ +Y+KC  I  A  +F
Sbjct: 62  PVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNS-----LVALYAKCNDINGARKLF 116

Query: 375 -RAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLV 433
            R   +  V  W ++I     +GM T+AL LF++M + G+     TF   L AC  +  +
Sbjct: 117 DRMYVRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFI 176

Query: 434 NDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLS 493
             G +    ++   G    +     LV +  R G + EA     ++  + + V W S+L+
Sbjct: 177 KLGMQIHAAILKS-GRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGK-DIVTWNSMLT 234

Query: 494 GARNHG 499
           G   +G
Sbjct: 235 GFIQNG 240



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 7/143 (4%)

Query: 360 MYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAIT 419
           MY KCGS+  A  +F  +S++ +  W AM+ G   +G A  AL+++ +M  +G+   + T
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 420 FIGVLNACSHAGLVND---GRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTI 476
           F  +L AC   G+V D   G     + I  YG +  +     LV +  +   +  A+   
Sbjct: 61  FPVLLKAC---GIVEDLFCGAEIHGLAIK-YGCDSFVFVVNSLVALYAKCNDINGARKLF 116

Query: 477 ESMPMRPNFVIWMSLLSGARNHG 499
           + M +R + V W S++S    +G
Sbjct: 117 DRMYVRNDVVSWNSIISAYSGNG 139


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 244/660 (36%), Positives = 382/660 (57%), Gaps = 12/660 (1%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +QLH+  +K  +     +   LL LYV+   +++  A  +F    Q  ++VL+N+++  +
Sbjct: 334 EQLHSYVIKAGISSDMIVEGALLDLYVN--CSDIKTAHEMF-LTAQTENVVLWNVMLVAF 390

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
                  E+  +F  +  + L+P+ FT P +++    +GA+  G+QIH  V K GF F+ 
Sbjct: 391 GKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNV 450

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
           +V S L+ MYAK G++D    +   + + D+VSW  LI GY +      A+K F EM +R
Sbjct: 451 YVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNR 510

Query: 218 DLFSWTC-LVDGFSKCGKVE-------IAREIFYRMPNRNLVSWNAMINGYMKAGDVDSA 269
            + S         S C  ++       I  + +    + +L   NA+++ Y + G +  A
Sbjct: 511 GIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEA 570

Query: 270 CELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGL 329
              F+ ++ +D I+WN +I+G+  +G   +AL++   M    +  +  T  SA+SA A +
Sbjct: 571 YLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVSAAANI 630

Query: 330 AVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMI 389
           A + +G+ +H+ I+K GF  D  +   LI  Y+KCGSIE A   F  + +K    W AMI
Sbjct: 631 ANIKQGKQIHAMIIKRGFDSDIEVSNALITFYAKCGSIEDARREFCEMPEKNDVSWNAMI 690

Query: 390 VGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGI 449
            G   HG   +A++LF KM ++G  P  +TF+GVL+ACSH GLV  G  YF  M  ++G+
Sbjct: 691 TGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACSHVGLVTKGLGYFESMSKEHGL 750

Query: 450 EPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAAN 509
            P   HY C+VD++ R G+L  A+  IE MP+ P+  IW +LLS    H N ++GE+AA 
Sbjct: 751 VPKPAHYACVVDLISRAGFLSRARKFIEEMPIEPDATIWRTLLSACTVHKNVEVGEFAAQ 810

Query: 510 NLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFV 569
           +L+++ P+    YV+LSN+YA +G+WD   + R+MM+ RG +K+PG S IE +  +H F 
Sbjct: 811 HLLELEPEDSATYVLLSNMYAVSGKWDCRDQTRQMMRNRGVKKEPGRSWIEVKNSVHAFY 870

Query: 570 VGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAF 629
           VGD+ HP  D+I+  L+E+  K    G+  D   +L  +E Q++K+  +  HSE+LAI F
Sbjct: 871 VGDRLHPLADKIYEFLAELNKKAAEIGYFQDRYSLLNDVE-QEQKDPTVYIHSEKLAITF 929

Query: 630 GLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           GL+++    PI ++KNLRVC DCHS  K +S I NR IIVRD  RFHHF+ G CSCKD+W
Sbjct: 930 GLLSLSDTVPIHVMKNLRVCKDCHSWIKFVSKISNRAIIVRDAYRFHHFEGGICSCKDYW 989



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 119/473 (25%), Positives = 227/473 (47%), Gaps = 16/473 (3%)

Query: 36  ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIK 95
           E ++LH   +K      S + ++L+ +Y    + +L     +F+  + + S+  ++ +I 
Sbjct: 28  ECKKLHGKILKLGFGNESVLCNKLVDVYFA--LGDLDGVVKVFED-MPNRSVRSWDKIIS 84

Query: 96  CYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA--RLGAIKEGKQIHGLVFKLGF 153
            ++  + S+  L LF  +++  + P   +   V++  +  R+G I+  +QIH  +   G 
Sbjct: 85  GFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIG-IRYAEQIHARIICHGL 143

Query: 154 GFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDE 213
                + + L+ +YAK G I   R+VFD +  KD VSW  +I G+ + G  E A+ LF E
Sbjct: 144 LCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCE 203

Query: 214 MPDRDLFS----WTCLVDGFSKCGKVEIARE----IFYRMPNRNLVSWNAMINGYMKAGD 265
           M    +F     ++ ++ G +K    ++  +    +F    +      NA++  Y +  +
Sbjct: 204 MHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPN 263

Query: 266 VDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSA 325
             SA ++F  M+ +D +++NS+I+G    G    ALEL   M    + P+  T+ S LSA
Sbjct: 264 FVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSA 323

Query: 326 VAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHW 385
            A    L KG  +HSY++K G   D ++   L+ +Y  C  I++A  +F     + V  W
Sbjct: 324 CASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLW 383

Query: 386 TAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN 445
             M+V  G     +++  +F +M   G+ P   T+  +L  C+  G ++ G +    +I 
Sbjct: 384 NVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIK 443

Query: 446 DYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNH 498
             G +  +     L+D+  + G L+ A   + ++    + V W +L+SG   H
Sbjct: 444 T-GFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLT-EDDVVSWTALISGYAQH 494



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 99/367 (26%), Positives = 182/367 (49%), Gaps = 13/367 (3%)

Query: 136 GAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLI 195
           G++ E K++HG + KLGFG +  + + LV +Y   G++D   +VF+ M ++ + SW+ +I
Sbjct: 24  GSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFEDMPNRSVRSWDKII 83

Query: 196 DGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFS--KCGKVEIAREIFYRMPNRN 249
            G+++K      + LF  M + ++     S+  ++   S  + G +  A +I  R+    
Sbjct: 84  SGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIG-IRYAEQIHARIICHG 142

Query: 250 L----VSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLE 305
           L    +  N +I  Y K G + SA ++FD++  +D ++W +MI+G+  NG   EA+ L  
Sbjct: 143 LLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFC 202

Query: 306 TMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCG 365
            M    + P      S LS    + + + G  +H+ + K G  ++  +   L+ +YS+  
Sbjct: 203 EMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMP 262

Query: 366 SIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN 425
           +  SA  VF  +  K    + ++I GL   G +  AL+LF KM R  +KP  +T   +L+
Sbjct: 263 NFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLS 322

Query: 426 ACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNF 485
           AC+  G +  G +  + +I   GI   +   G L+D+      ++ A     +     N 
Sbjct: 323 ACASNGALCKGEQLHSYVIKA-GISSDMIVEGALLDLYVNCSDIKTAHEMFLT-AQTENV 380

Query: 486 VIWMSLL 492
           V+W  +L
Sbjct: 381 VLWNVML 387



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 82/167 (49%), Gaps = 5/167 (2%)

Query: 338 MHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGM 397
           +H  I+K GF  + VL   L+ +Y   G ++  + VF  +  + V  W  +I G     M
Sbjct: 32  LHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFEDMPNRSVRSWDKIISGFMEKKM 91

Query: 398 ATQALDLFNKMCRMGMKPTAITFIGVLNACS--HAGLVNDGRRYFNMMINDYGIEPTIEH 455
           + + LDLF+ M    + PT I+F  VL ACS    G+    + +  ++ +     P I +
Sbjct: 92  SNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIGIRYAEQIHARIICHGLLCSPIISN 151

Query: 456 YGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKD 502
              L+ +  + G +  A+   +++  + + V W++++SG   +G ++
Sbjct: 152 P--LIGLYAKNGLIISARKVFDNLCTKDS-VSWVAMISGFSQNGYEE 195


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 245/625 (39%), Positives = 369/625 (59%), Gaps = 14/625 (2%)

Query: 75  RSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAAR 134
           R +F++++    L+ +N +I          EA  ++  +    ++P+  T   ++     
Sbjct: 282 RQVFEKLVNR-DLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVN 340

Query: 135 LGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCL 194
             A+  GK+IH  V K GF  D  V ++L+SMY++ G I   R VFD M  KD++SW  +
Sbjct: 341 SAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAM 400

Query: 195 IDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR 248
           I G  K G    A+ ++ EM      P+R   ++T +++  S    +E  R I  ++   
Sbjct: 401 IGGLAKSGFGAEALTVYQEMQQAGVEPNR--VTYTSILNACSSPAALEWGRRIHQQVVEA 458

Query: 249 NLVS----WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELL 304
            L +     N ++N Y   G V  A ++FD M  RD++ +N+MI GY  +    EAL+L 
Sbjct: 459 GLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLF 518

Query: 305 ETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKC 364
           + +    + P+  T ++ L+A A    L   R +H+ + K GF  D  +G  L+  Y+KC
Sbjct: 519 DRLQEEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKC 578

Query: 365 GSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVL 424
           GS   A  VF  ++K+ V  W A+I G   HG    AL LF +M   G+KP  +TF+ +L
Sbjct: 579 GSFSDASIVFEKMTKRNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLL 638

Query: 425 NACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPN 484
           +ACSHAGL+ +GRRYF  M  D+ I PTIEHYGC+VD+L R G L+EA++ I++MP + N
Sbjct: 639 SACSHAGLLEEGRRYFCSMSQDFAIIPTIEHYGCMVDLLGRAGQLDEAEALIKTMPFQAN 698

Query: 485 FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREM 544
             IW +LL   R HGN  + E AA + +K+  D    YV LS++YAAAG WD  +++R++
Sbjct: 699 TRIWGALLGACRIHGNVPVAERAAESSLKLDLDNAVVYVALSHMYAAAGMWDSAAKLRKL 758

Query: 545 MKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQV 604
           M++RG  K+PG S I+    LH FV  D+SHPQ+++I+++L  + + +K  G+VPDT  V
Sbjct: 759 MEQRGVTKEPGRSWIQVGDKLHYFVAEDRSHPQSEKIYAELDRLTHAMKMKGYVPDTRSV 818

Query: 605 LLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYN 664
           +  + D+ EKE  + +HSERLAIA+GLI+    + I I KNLRVC DCH+ TK +S I +
Sbjct: 819 MHDV-DEGEKENAVCHHSERLAIAYGLISTPPGTRIHIFKNLRVCPDCHTATKFISKIVD 877

Query: 665 REIIVRDNSRFHHFKNGSCSCKDFW 689
           REII RD +RFHHFK+G CSC D+W
Sbjct: 878 REIIARDVNRFHHFKDGVCSCGDYW 902



 Score =  221 bits (564), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 157/541 (29%), Positives = 262/541 (48%), Gaps = 44/541 (8%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLV-LYNLLIKC 96
           +Q+H   ++   +      + L+++Y+     ++  AR ++ ++      V  +N ++  
Sbjct: 43  RQVHQHIIQHRTVPDQYTVNALINMYI--QCGSIEEARQVWKKLSYMERTVHSWNAMVVG 100

Query: 97  YVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFD 156
           Y+      +AL L   +    L PD  T+   +      GA++ G++IH    + G  FD
Sbjct: 101 YIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFD 160

Query: 157 KFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM-- 214
             V + +++MYAK G I+  R VFD M+ K +VSW   I GY   G  E A ++F +M  
Sbjct: 161 VKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQ 220

Query: 215 ----PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPN----RNLVSWNAMINGYMKAGDV 266
               P+R   ++  +++ FS    ++  + +  R+ N     +     A++  Y K G  
Sbjct: 221 EGVVPNR--ITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSY 278

Query: 267 DSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326
               ++F+ +  RDLI WN+MI G    G + EA E+   M    V+PN  T V  L+A 
Sbjct: 279 KDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNAC 338

Query: 327 AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWT 386
              A L+ G+ +HS + K GF  D  +   LI MYS+CGSI+ A  VF  + +K V  WT
Sbjct: 339 VNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWT 398

Query: 387 AMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIND 446
           AMI GL   G   +AL ++ +M + G++P  +T+  +LNACS    +  GRR    ++ +
Sbjct: 399 AMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVV-E 457

Query: 447 YGIEPTIEHYG-CLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGE 505
            G+  T  H G  LV++    G +++A+   + M  R + V +           N  IG 
Sbjct: 458 AGL-ATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQR-DIVAY-----------NAMIGG 504

Query: 506 YAANNLIKVA-------------PDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRK 552
           YAA+NL K A             PD +  Y+ + N  A +G  +   E+  +++K GF  
Sbjct: 505 YAAHNLGKEALKLFDRLQEEGLKPDKV-TYINMLNACANSGSLEWAREIHTLVRKGGFFS 563

Query: 553 D 553
           D
Sbjct: 564 D 564



 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 110/374 (29%), Positives = 197/374 (52%), Gaps = 22/374 (5%)

Query: 141 GKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD--DKDLVSWNCLIDGY 198
           G+Q+H  + +     D++ +++L++MY + G I+  R+V+  +   ++ + SWN ++ GY
Sbjct: 42  GRQVHQHIIQHRTVPDQYTVNALINMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGY 101

Query: 199 VKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKC---GKVEIAREIFYRMPNRN 249
           ++ G +E A+KL  +M      PDR     T ++   S C   G +E  REI ++     
Sbjct: 102 IQYGYIEKALKLLRQMQQHGLAPDR-----TTIMSFLSSCKSPGALEWGREIHFQAMQAG 156

Query: 250 LV----SWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLE 305
           L+      N ++N Y K G ++ A E+FD ME + +++W   I GY   GR   A E+ +
Sbjct: 157 LLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQ 216

Query: 306 TMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCG 365
            M    V+PN  T +S L+A +  A L  G+ +HS I+  G   D  +GT L++MY+KCG
Sbjct: 217 KMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCG 276

Query: 366 SIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN 425
           S +    VF  +  + +  W  MI GL   G   +A +++N+M R G+ P  IT++ +LN
Sbjct: 277 SYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLN 336

Query: 426 ACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNF 485
           AC ++  ++ G+   +  +   G    I     L+ +  R G +++A+   + M +R + 
Sbjct: 337 ACVNSAALHWGKE-IHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKM-VRKDV 394

Query: 486 VIWMSLLSGARNHG 499
           + W +++ G    G
Sbjct: 395 ISWTAMIGGLAKSG 408



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 107/218 (49%), Gaps = 11/218 (5%)

Query: 332 LNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS--KKKVGHWTAMI 389
           L  GR +H +I+++  V D      LI MY +CGSIE A  V++ +S  ++ V  W AM+
Sbjct: 39  LVAGRQVHQHIIQHRTVPDQYTVNALINMYIQCGSIEEARQVWKKLSYMERTVHSWNAMV 98

Query: 390 VGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR-YFNMMINDYG 448
           VG   +G   +AL L  +M + G+ P   T +  L++C   G +  GR  +F  M    G
Sbjct: 99  VGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAM--QAG 156

Query: 449 IEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAA 508
           +   ++   C++++  + G +EEA+   + M  + + V W   + G  + G  +      
Sbjct: 157 LLFDVKVANCILNMYAKCGSIEEAREVFDKME-KKSVVSWTITIGGYADCGRSETAFEIF 215

Query: 509 NNLIK--VAPDTIGCYVVLSNIYA--AAGQWDKVSEVR 542
             + +  V P+ I  Y+ + N ++  AA +W K    R
Sbjct: 216 QKMEQEGVVPNRI-TYISVLNAFSSPAALKWGKAVHSR 252


>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
          Length = 575

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 236/572 (41%), Positives = 345/572 (60%), Gaps = 23/572 (4%)

Query: 118 LLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGR 177
           LL ++F+L   ++ +A L A     +       LG G       +L S +A         
Sbjct: 27  LLDNSFSLSLAMQASAALSASVPAMR------DLGLGAASLHARALKSGFAA-------- 72

Query: 178 RVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEI 237
                    DL     L++ Y K G  ++A   FDE P RD+F    ++  +   G+V  
Sbjct: 73  --------ADLFVRTALVEAYAKAGRADLARAAFDEAPRRDVFLCNVMLAAYVTRGEVAE 124

Query: 238 AREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRF 297
           AR +F  M  R++VSWN MI+GY   G+VD A E+F+ M+ RD  +W+SM++ Y    R 
Sbjct: 125 ARRVFDGMRERDMVSWNTMIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMMSAYTKGRRS 184

Query: 298 MEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLL 357
            +ALEL   M    V P+  T+VS LSA + +  L  G  +H ++  NG  +D  LGT L
Sbjct: 185 KDALELWREMRAACVNPDCTTMVSVLSACSDMGALAVGAEVHQFVESNGVELDVKLGTAL 244

Query: 358 IQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA 417
           I MY+KCG IE+++ VF ++  K V  W++MI+GL  HG    AL LF++M   G++P  
Sbjct: 245 IDMYAKCGDIENSVRVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLFSRMLSEGLQPNE 304

Query: 418 ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIE 477
           +TFIGVL +C+H GLV+DG++YF+ M   +G+ P ++HYGC+VD+L R+G++EEAK  I 
Sbjct: 305 VTFIGVLISCTHLGLVSDGKKYFSSMSVVHGVTPKVQHYGCMVDLLGRSGHIEEAKQLIR 364

Query: 478 SMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDK 537
            MP  P+ VIW +LL   R + N ++ E A   L  + P   G YV+LSNIYA A  W+ 
Sbjct: 365 DMPFEPDAVIWRALLGACRIYKNVEVAEEAMAKLRVLDPHADGHYVLLSNIYAQANSWEG 424

Query: 538 VSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGH 597
           V+E+R  +++   ++ PG SSIE +  +HEF+ GD+SHP++ EI+  L EM ++L+ AG+
Sbjct: 425 VAEMRRTLRRERIQRIPGRSSIEWQNTIHEFISGDRSHPRSKEIYKMLGEMMDRLRQAGY 484

Query: 598 VPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTK 657
            P T  VL  I D++ KE  L  HSE+LA+AFGL+   + S +RI KNLR C DCHS  K
Sbjct: 485 KPMTGLVLQDI-DEQSKERALAEHSEKLAVAFGLLTTPAGSTLRITKNLRACEDCHSAIK 543

Query: 658 LLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           L++ +Y R++I+RD +RFHHF  G CSCKD+W
Sbjct: 544 LIALLYERKLIIRDRNRFHHFSEGRCSCKDYW 575



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 110/227 (48%), Gaps = 11/227 (4%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           AR +F+ +    +   ++ ++  Y   +RS +AL L+ ++    + PD  T+  V+   +
Sbjct: 156 AREVFNGMDDRDAFS-WSSMMSAYTKGRRSKDALELWREMRAACVNPDCTTMVSVLSACS 214

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
            +GA+  G ++H  V   G   D  + ++L+ MYAK G+I+   RVF +M  KD+++W+ 
Sbjct: 215 DMGALAVGAEVHQFVESNGVELDVKLGTALIDMYAKCGDIENSVRVFHSMPVKDVLTWSS 274

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNRN 249
           +I G    G    A+ LF  M    L     ++  ++   +  G V   ++ F  M   +
Sbjct: 275 MIIGLANHGFGHDALSLFSRMLSEGLQPNEVTFIGVLISCTHLGLVSDGKKYFSSMSVVH 334

Query: 250 LVS-----WNAMINGYMKAGDVDSACELFDDMEIR-DLITWNSMIAG 290
            V+     +  M++   ++G ++ A +L  DM    D + W +++  
Sbjct: 335 GVTPKVQHYGCMVDLLGRSGHIEEAKQLIRDMPFEPDAVIWRALLGA 381


>gi|356522333|ref|XP_003529801.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 650

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 245/664 (36%), Positives = 390/664 (58%), Gaps = 25/664 (3%)

Query: 26  NILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHP 85
           ++L+   +  + +Q+H+ ++K  L       +R+++        N++YA  +FD I  HP
Sbjct: 12  SLLEKCKSMYQLKQIHSHTIKMGLSSDPLFRNRVIAFCCAHESGNMNYAHQVFDTI-PHP 70

Query: 86  SLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIH 145
           S+ ++N +IK Y         ++++  +L   + PD FT P  +KG  R  A++ GK++ 
Sbjct: 71  SMFIWNTMIKGYSKISHPENGVSMYLLMLTSNIKPDRFTFPFSLKGFTRDMALQHGKELL 130

Query: 146 GLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVE 205
               K GF  + FV  + + M++  G +DL  +VFD  D  ++V+WN ++ GY +  + +
Sbjct: 131 NHAVKHGFDSNLFVQKAFIHMFSLCGIVDLAHKVFDMGDACEVVTWNIMLSGYNRVKQFK 190

Query: 206 VAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGD 265
           ++  L              ++   SK   +E  + IF +  N  +V      + +   G+
Sbjct: 191 ISKMLL-------------VLSACSKLKDLEWGKHIF-KYINGGIVE-----HMFAACGE 231

Query: 266 VDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSA 325
           +D A  +FD+M+ RD+++W +MI GY     F+ AL L   M + +V P++ T+VS L A
Sbjct: 232 MDEAQGVFDNMKTRDVVSWTAMIDGYLRMNHFIGALALFREMQMSNVKPDEFTMVSILIA 291

Query: 326 VAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHW 385
            A L  L  G W+ + I KN    D  +G  L+ MY KCG++  A  VF+ + +K    W
Sbjct: 292 CALLGALELGEWVKTCIDKNSNKNDSFVGNALVDMYFKCGNVRKAKKVFKEMYQKDKFTW 351

Query: 386 TAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN 445
           T MIVGL ++G   +AL +F+ M    + P  IT+IGVL AC    +V+ G+ +F  M  
Sbjct: 352 TTMIVGLAINGHGEEALAMFSNMIEASVTPDEITYIGVLCAC----MVDKGKSFFTNMTM 407

Query: 446 DYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGE 505
            +GI+PT+ HYGC+VD+L   G LEEA   I +MP++PN ++W S L   R H N  + +
Sbjct: 408 QHGIKPTVTHYGCMVDLLGCVGCLEEALEVIVNMPVKPNSIVWGSPLGACRVHKNVQLAD 467

Query: 506 YAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVL 565
            AA  ++++ P+    YV+L NIYAA+ +W+ + +VR++M +RG +K PG S +E  G +
Sbjct: 468 MAAKQILELEPENGAVYVLLCNIYAASKKWENLCQVRKLMMERGIKKTPGCSLMELNGNV 527

Query: 566 HEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERL 625
           +EFV GD+SHPQ+ EI++KL  M   L  AG+ PDT++V L + ++ +KE  L  HSE+L
Sbjct: 528 YEFVAGDQSHPQSKEIYAKLENMMQGLIKAGYSPDTSEVFLDLGEE-DKETALYRHSEKL 586

Query: 626 AIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSC 685
           AIA+ LI+      IRIVKNLR+C DCH + KL+S  YNRE+IV+D +RFHHF++GSCSC
Sbjct: 587 AIAYALISSGPGVTIRIVKNLRMCVDCHHMAKLVSQAYNRELIVKDKTRFHHFRHGSCSC 646

Query: 686 KDFW 689
            +FW
Sbjct: 647 NNFW 650


>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
 gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
          Length = 659

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 255/664 (38%), Positives = 372/664 (56%), Gaps = 48/664 (7%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYV---DPHINNLHYARSIFDRILQHPSLVLYN 91
           K  ++LH +    N   +  +  +L+  Y    +P +      R +FD  +   ++V YN
Sbjct: 35  KTLKKLHTMIFYLNSHQNPSLGIKLMRSYAACGEPGL-----TRKVFDE-MSDRNVVFYN 88

Query: 92  LLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKL 151
           ++I+ YV N R  + L +F ++++    PDN+T PCV+K  +    ++ G  IHG V K+
Sbjct: 89  VMIRSYVNNHRYDDGLLVFREMVNGGFRPDNYTYPCVLKACSCSENLRYGLLIHGDVLKV 148

Query: 152 GFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLF 211
           G  F+ FV + L++MY K G +   RRVFD M  KD+VSWN ++ GY      + A+++ 
Sbjct: 149 GLDFNLFVGNGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVAGYAHNMRFDDALEIC 208

Query: 212 DEMPDRDLFSWTCLVDGF------SKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGD 265
            EM D       C +         +    V    +IF  +  +NL+SWN MI  YMK   
Sbjct: 209 REMEDYGQKPDGCTMASLMPAVANTSSENVLYVEKIFVNLERKNLISWNVMIRVYMK--- 265

Query: 266 VDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSA 325
                                       N    +A++L   M    V P+  T  S L A
Sbjct: 266 ----------------------------NSLPTQAVDLYLQMEKCRVEPDAITFASVLPA 297

Query: 326 VAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHW 385
              L+ L  GR +H Y+ K     + +L   LI MY++CG ++ A  VF  +  + V  W
Sbjct: 298 CGDLSALLLGRRIHEYVEKKKLCPNLLLENSLIDMYARCGCLDDAKRVFDRMKFRDVASW 357

Query: 386 TAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN 445
           T++I   GM G    A+ LF +M   G  P +I F+ +L+ACSH+GL+++GR YF  M +
Sbjct: 358 TSLISAYGMTGQGCNAVALFTEMLNSGQAPDSIAFVAILSACSHSGLLDEGRIYFKQMTD 417

Query: 446 DYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGE 505
           DY I P IEHY CLVD+L R G ++EA + I+ MP+ PN  +W +LLS  R   N DIG 
Sbjct: 418 DYRITPRIEHYACLVDLLGRAGRVDEAYNIIKQMPIEPNERVWATLLSSCRVFTNMDIGI 477

Query: 506 YAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVL 565
            AA+NL+++AP+  G YV+LSNIYA AG+W +V+E+R +MK++  RK PG S++E    +
Sbjct: 478 LAADNLLQLAPEQSGYYVLLSNIYAKAGRWKEVTEIRSVMKRKKIRKTPGISNVELNNQV 537

Query: 566 HEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERL 625
           H F+ GD SHPQ+ EI+ +L  +  K+K  G+VP+T   L  +E++ +KE  L  HSE+L
Sbjct: 538 HTFLAGDTSHPQSKEIYEELGVLVAKMKELGYVPETDSALHDVEEE-DKEGHLAVHSEKL 596

Query: 626 AIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSC 685
           AI F L+N +    IRI KNLRVC DCH   KL+S I  REIIVRD +RFHHFK+G CSC
Sbjct: 597 AIVFALLNTQEYQ-IRITKNLRVCGDCHIAAKLISKIVEREIIVRDTNRFHHFKDGVCSC 655

Query: 686 KDFW 689
            D+W
Sbjct: 656 GDYW 659


>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
          Length = 1130

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 227/476 (47%), Positives = 313/476 (65%), Gaps = 5/476 (1%)

Query: 218 DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDME 277
           D F  T L+  +S CG +  AR++F  +P  +L SWN++IN   +AG VD A  LF  M 
Sbjct: 98  DPFVQTSLISMYSSCGNLGFARQVFDEIPQPDLPSWNSIINANFQAGLVDMARNLFAVMP 157

Query: 278 IRDLITWNSMIAGYELNGRFMEALELLETML---IGDVLPNDATLVSALSAVAGLAVLNK 334
            R++I+W+ MI GY   G++ EAL L   M    + DV PN+ T+   L+A   L  L  
Sbjct: 158 ERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEH 217

Query: 335 GRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKK-VGHWTAMIVGLG 393
           G+W H+YI K G  VD VLGT LI MY+KCGS+E A  VF  +   K V  W+AMI GL 
Sbjct: 218 GKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLA 277

Query: 394 MHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTI 453
           MHG+A + + LF+KM   G++P A+TF+ V  AC H GLV++G+ Y   M  DY I PTI
Sbjct: 278 MHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTI 337

Query: 454 EHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIK 513
           +HYGC+VD+  R G ++EA + ++SMPM P+ ++W +LLSG+R HG+ +  E A   LI+
Sbjct: 338 QHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIETCELALKKLIE 397

Query: 514 VAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDK 573
           + P   G YV+LSN+YA  G+W+ V  VR++M+  G +K PG S IE  GVLHEF VGD 
Sbjct: 398 LEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGCSLIEVGGVLHEFFVGDD 457

Query: 574 SHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLIN 633
           SHP+T +IH  L E+  +LK  G+V +T +VLL + D++ KE  L  HSE+LA+A+G + 
Sbjct: 458 SHPETRQIHMMLEEILERLKVEGYVGNTKEVLLDL-DEEGKELALSLHSEKLALAYGFLK 516

Query: 634 VKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
               +PIRIVKNLR+C DCH   K++S +++REIIVRD +RFHHF  G CSC+D+W
Sbjct: 517 TSPGTPIRIVKNLRICRDCHVAIKMISKVFDREIIVRDCNRFHHFTQGLCSCRDYW 572



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 93/367 (25%), Positives = 176/367 (47%), Gaps = 52/367 (14%)

Query: 82  LQHPSL--VLYNLLIKCYVFNQR-----SHEALTLFCDLLDRFLLPDNFTLPCVIKGAAR 134
             HP+L   L+N LI+ +V  +      +H  +++F  +    + PD  T P +++  A 
Sbjct: 17  FSHPTLESFLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFAS 76

Query: 135 LGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCL 194
              +  G+ +H  + + G   D FV +SL+SMY+  G +   R+VFD +   DL SWN +
Sbjct: 77  PSLLHLGRSVHAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVFDEIPQPDLPSWNSI 136

Query: 195 IDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM--------- 245
           I+   + G V++A  LF  MP+R++ SW+C+++G+ +CG+ + A  +F  M         
Sbjct: 137 INANFQAGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVR 196

Query: 246 PNRNLVS----------------W-----------------NAMINGYMKAGDVDSACEL 272
           PN   +S                W                  A+I+ Y K G V+ A  +
Sbjct: 197 PNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWV 256

Query: 273 FDDM-EIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAV 331
           F ++   +D++ W++MI+G  ++G   E + L   M+   V PN  T ++   A     +
Sbjct: 257 FSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGL 316

Query: 332 LNKGRWMHSYIVKNGFVVDGVLGT-LLIQMYSKCGSIESALTVFRAIS-KKKVGHWTAMI 389
           +++G+     + ++  ++  +     ++ +Y + G I+ A  V +++  +  V  W A++
Sbjct: 317 VSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALL 376

Query: 390 VGLGMHG 396
            G  MHG
Sbjct: 377 SGSRMHG 383



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 153/344 (44%), Gaps = 52/344 (15%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQH--PS--------- 86
           + +HA  ++  L     + + L+S+Y      NL +AR +FD I Q   PS         
Sbjct: 84  RSVHAQILRFGLAIDPFVQTSLISMYSS--CGNLGFARQVFDEIPQPDLPSWNSIINANF 141

Query: 87  -------------------LVLYNLLIKCYVFNQRSHEALTLFCD---LLDRFLLPDNFT 124
                              ++ ++ +I  YV   +  EAL LF +   L    + P+ FT
Sbjct: 142 QAGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFT 201

Query: 125 LPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAM- 183
           +  V+    RLGA++ GK  H  + K G   D  + ++L+ MYAK G ++    VF  + 
Sbjct: 202 MSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLG 261

Query: 184 DDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLF-SWTCLVDGFSKC---GKVEIAR 239
            +KD+++W+ +I G    G  E  + LF +M ++ +  +    +  F  C   G V   +
Sbjct: 262 PNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGK 321

Query: 240 EIFYRMPN-----RNLVSWNAMINGYMKAGDVDSACELFDDMEIR-DLITWNSMIAGYEL 293
           +   RM         +  +  M++ Y +AG +  A  +   M +  D++ W ++++G  +
Sbjct: 322 DYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRM 381

Query: 294 NGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRW 337
           +G  +E  EL    LI ++ P ++     LS V       +GRW
Sbjct: 382 HGD-IETCELALKKLI-ELEPTNSGAYVLLSNVYA----KRGRW 419



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 108/255 (42%), Gaps = 40/255 (15%)

Query: 284 WNSMIAGY-----ELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWM 338
           WN++I  +     +  G     + +   M    V P+  T    L + A  ++L+ GR +
Sbjct: 27  WNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHLGRSV 86

Query: 339 HSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK------------------- 379
           H+ I++ G  +D  + T LI MYS CG++  A  VF  I +                   
Sbjct: 87  HAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVFDEIPQPDLPSWNSIINANFQAGLV 146

Query: 380 ------------KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG---MKPTAITFIGVL 424
                       + V  W+ MI G    G   +AL LF +M  +G   ++P   T  GVL
Sbjct: 147 DMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVL 206

Query: 425 NACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPN 484
            AC   G +  G ++ +  I+  G+   +     L+D+  + G +E+A     ++    +
Sbjct: 207 AACGRLGALEHG-KWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKD 265

Query: 485 FVIWMSLLSGARNHG 499
            + W +++SG   HG
Sbjct: 266 VMAWSAMISGLAMHG 280


>gi|357498701|ref|XP_003619639.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494654|gb|AES75857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1182

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 228/475 (48%), Positives = 322/475 (67%), Gaps = 2/475 (0%)

Query: 216 DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDD 275
           D ++F    L+  F K G+VE AR +F    +R+  SWN MI  Y+ +G++  A ELFD+
Sbjct: 310 DGNVFVVNALIGMFGKWGRVEDARNVFDSAVDRDFYSWNTMIGAYVGSGNMVLAKELFDE 369

Query: 276 MEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKG 335
           M  RD+++W+++IAGY   G FMEAL+    ML  +V PN+ T+VSAL+A + L  L++G
Sbjct: 370 MHERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQSEVKPNEYTMVSALAACSNLVALDQG 429

Query: 336 RWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS-KKKVGHWTAMIVGLGM 394
           +W+H YI ++   ++  L   LI MY+KCG I+SA +VF     K+KV  W AMI G  M
Sbjct: 430 KWIHVYIRRDNIKMNDRLLASLIDMYAKCGEIDSASSVFHEHKVKRKVWPWNAMIGGFAM 489

Query: 395 HGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIE 454
           HG   +A+++F KM    + P  +TFI +LNACSH  +V +G+ YF +M +DYGI P IE
Sbjct: 490 HGKPEEAINVFEKMKVEKVSPNKVTFIALLNACSHGYMVKEGKSYFELMASDYGINPEIE 549

Query: 455 HYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKV 514
           HYGC+VD+L R+G+L++++  I SMPM P+  IW +LL+  R + + + G      + ++
Sbjct: 550 HYGCMVDLLSRSGHLKDSEEMILSMPMAPDVAIWGALLNACRIYKDMERGYRIGRIIKEI 609

Query: 515 APDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKD-PGSSSIEHRGVLHEFVVGDK 573
            P+ IGC V+L NIY+ +G+W++   VRE  +    RK  PG SSIE  GV HEF+VGD+
Sbjct: 610 DPNHIGCNVLLGNIYSTSGRWNEARMVREKNEINSDRKKIPGFSSIELNGVFHEFLVGDR 669

Query: 574 SHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLIN 633
           SHPQ+ EI+S L EM +KLK AG+VP+  +VLL  +D+++KE  L  HSE+LAIAFGL+N
Sbjct: 670 SHPQSREIYSFLDEMISKLKIAGYVPELGEVLLDFDDEEDKETALSVHSEKLAIAFGLMN 729

Query: 634 VKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDF 688
               +PIRIVKNLRVC DCH  TK +S +Y+R IIVRD  R+HHFK+G CSCKD+
Sbjct: 730 TAPGTPIRIVKNLRVCGDCHQATKFISKVYDRVIIVRDRMRYHHFKDGICSCKDY 784



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 134/526 (25%), Positives = 237/526 (45%), Gaps = 95/526 (18%)

Query: 1   MQTQTLQ----HSSPIHALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGIS 56
           +QTQ L     ++ P H +     S L    +    +  + +Q HA  + T  I    I+
Sbjct: 159 IQTQNLHKNMINTKPFHYVNHSKLSSL----IDLCKSINQIKQTHANLITTAQITLPVIA 214

Query: 57  SRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSH-EALTLFCDLL- 114
           ++ L    +  + +L YA  +FD+I Q P L +YN +IK +  +  S+ +++ +F  L+ 
Sbjct: 215 NKFLK---NVALASLTYAHKLFDQIPQ-PDLFIYNTMIKSHSMSPHSYLDSIAVFRSLIR 270

Query: 115 DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEID 174
           D    P+ ++             ++EG+Q+     K+G   + FV+++L+ M+ K+G ++
Sbjct: 271 DSGYFPNRYSFVFAFGACGNGMCVREGEQVFTHAVKVGLDGNVFVVNALIGMFGKWGRVE 330

Query: 175 LGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGK 234
             R VFD+  D+D  SWN +I  YV  G + +A +LFDEM +RD+ SW+ ++ G+ + G 
Sbjct: 331 DARNVFDSAVDRDFYSWNTMIGAYVGSGNMVLAKELFDEMHERDVVSWSTIIAGYVQVGC 390

Query: 235 VEIAREIFYRM------PNR-----------NLVSWN----------------------A 255
              A + F++M      PN            NLV+ +                      +
Sbjct: 391 FMEALDFFHKMLQSEVKPNEYTMVSALAACSNLVALDQGKWIHVYIRRDNIKMNDRLLAS 450

Query: 256 MINGYMKAGDVDSACELFDDMEI-RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLP 314
           +I+ Y K G++DSA  +F + ++ R +  WN+MI G+ ++G+  EA+ + E M +  V P
Sbjct: 451 LIDMYAKCGEIDSASSVFHEHKVKRKVWPWNAMIGGFAMHGKPEEAINVFEKMKVEKVSP 510

Query: 315 NDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVF 374
           N  T ++ L+A +           H Y+VK G        +    M S  G         
Sbjct: 511 NKVTFIALLNACS-----------HGYMVKEG-------KSYFELMASDYG--------- 543

Query: 375 RAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVN 434
                 ++ H+  M+  L   G    + ++   +  M M P    +  +LNAC    +  
Sbjct: 544 ---INPEIEHYGCMVDLLSRSGHLKDSEEM---ILSMPMAPDVAIWGALLNACR---IYK 594

Query: 435 DGRRYFNMMINDYGIEPTIEHYGC---LVDILCRTGYLEEAKSTIE 477
           D  R + +      I+P   H GC   L +I   +G   EA+   E
Sbjct: 595 DMERGYRIGRIIKEIDPN--HIGCNVLLGNIYSTSGRWNEARMVRE 638



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/294 (22%), Positives = 126/294 (42%), Gaps = 38/294 (12%)

Query: 269 ACELFDDMEIRDLITWNSMIAGYELNGR-FMEALELLETMLIGD--VLPNDATLVSALSA 325
           A +LFD +   DL  +N+MI  + ++   +++++ +  + LI D    PN  + V A  A
Sbjct: 229 AHKLFDQIPQPDLFIYNTMIKSHSMSPHSYLDSIAVFRS-LIRDSGYFPNRYSFVFAFGA 287

Query: 326 VAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRA--------- 376
                 + +G  + ++ VK G   +  +   LI M+ K G +E A  VF +         
Sbjct: 288 CGNGMCVREGEQVFTHAVKVGLDGNVFVVNALIGMFGKWGRVEDARNVFDSAVDRDFYSW 347

Query: 377 ----------------------ISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMK 414
                                 + ++ V  W+ +I G    G   +ALD F+KM +  +K
Sbjct: 348 NTMIGAYVGSGNMVLAKELFDEMHERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQSEVK 407

Query: 415 PTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKS 474
           P   T +  L ACS+   ++ G ++ ++ I    I+        L+D+  + G ++ A S
Sbjct: 408 PNEYTMVSALAACSNLVALDQG-KWIHVYIRRDNIKMNDRLLASLIDMYAKCGEIDSASS 466

Query: 475 TIESMPMRPNFVIWMSLLSGARNHGNKD--IGEYAANNLIKVAPDTIGCYVVLS 526
                 ++     W +++ G   HG  +  I  +    + KV+P+ +    +L+
Sbjct: 467 VFHEHKVKRKVWPWNAMIGGFAMHGKPEEAINVFEKMKVEKVSPNKVTFIALLN 520


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 251/686 (36%), Positives = 388/686 (56%), Gaps = 76/686 (11%)

Query: 78  FDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGA 137
           FDR+ Q  S V +  +I  Y    + H+A+ +  +++   + P  FTL  V+   A    
Sbjct: 103 FDRLPQRDS-VSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFTLTNVLASVAATRC 161

Query: 138 IKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAK---------------------------- 169
           ++ GK++H  + KLG   +  V +SL++MYAK                            
Sbjct: 162 LETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIAL 221

Query: 170 ---FGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM-------PDRDL 219
               G++DL    F+ M ++D+V+WN +I GY ++G    A+ +F +M       PDR  
Sbjct: 222 HMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFT 281

Query: 220 FS---------------------------------WTCLVDGFSKCGKVEIAREIFYRMP 246
            +                                    L+  +S+CG VE AR +  +  
Sbjct: 282 LASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRG 341

Query: 247 NRNLV--SWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELL 304
            ++L    + A+++GY+K GD++ A  +FD ++ RD++ W +MI GYE +G + EA+ L 
Sbjct: 342 TKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLF 401

Query: 305 ETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKC 364
            +M+  +  PN  TL + LS  + LA L  G+ +H   VK+G +    +   LI MY+K 
Sbjct: 402 RSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKA 461

Query: 365 GSIESALTVFRAIS-KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGV 423
           GSI SA   F  I  ++    WT+MI+ L  HG A +AL+LF  M   G++P  IT++GV
Sbjct: 462 GSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGV 521

Query: 424 LNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRP 483
            +AC+HAGLVN GR+YF+MM +   I PT+ HY C+VD+  R G L+EA+  IE MP+ P
Sbjct: 522 FSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEP 581

Query: 484 NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVRE 543
           + V W SLLS  R + N D+G+ AA  L+ + P+  G Y  L+N+Y+A G+W++ +++R+
Sbjct: 582 DVVTWGSLLSACRVYKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRK 641

Query: 544 MMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQ 603
            MK    +K+ G S IE +  +H F V D  HPQ +EI+  + ++ +++K  G+VPDT  
Sbjct: 642 SMKDGRVKKEQGFSWIEVKHKVHAFGVEDGIHPQKNEIYITMKKIWDEIKKMGYVPDTAS 701

Query: 604 VLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIY 663
           VL  +E++  KE  L +HSE+LAIAFGLI+   ++ +RI+KNLRVCNDCH+  K +S + 
Sbjct: 702 VLHDLEEEV-KEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLV 760

Query: 664 NREIIVRDNSRFHHFKNGSCSCKDFW 689
            REIIVRD +RFHHFK+G CSC+D+W
Sbjct: 761 GREIIVRDTTRFHHFKDGFCSCRDYW 786



 Score =  171 bits (434), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 136/498 (27%), Positives = 215/498 (43%), Gaps = 111/498 (22%)

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
           F  ++++S YAK G++D     FD +  +D VSW  +I GY   G+   A+++  EM   
Sbjct: 81  FSWNTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMRE 140

Query: 218 DL----FSWT----------CLVDG-------------------------FSKCGKVEIA 238
            +    F+ T          CL  G                         ++KCG   +A
Sbjct: 141 GIEPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMA 200

Query: 239 REIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFM 298
           + +F RM  +++ SWNAMI  +M+ G +D A   F+ M  RD++TWNSMI+GY   G  +
Sbjct: 201 KVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDL 260

Query: 299 EALELLETMLIGDVL-PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLL 357
            AL++   ML   +L P+  TL S LSA A L  L  G  +HS+IV  GF + G++   L
Sbjct: 261 RALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNAL 320

Query: 358 IQMYSKCGSIESAL---------------------------------TVFRAISKKKVGH 384
           I MYS+CG +E+A                                   +F ++  + V  
Sbjct: 321 ISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVA 380

Query: 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACS-----------HAGLV 433
           WTAMIVG   HG+  +A++LF  M     +P + T   +L+  S           H   V
Sbjct: 381 WTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAV 440

Query: 434 NDGRRY----FNMMINDYGIEPTIE----------------HYGCLVDILCRTGYLEEAK 473
             G  Y     N +I  Y    +I                  +  ++  L + G+ EEA 
Sbjct: 441 KSGEIYSVSVSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEAL 500

Query: 474 STIESMPM---RPNFVIWMSLLSGARNHGNKDIGEY---AANNLIKVAPDTIGCYVVLSN 527
              E+M M   RP+ + ++ + S   + G  + G        ++ K+ P T+  Y  + +
Sbjct: 501 ELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIP-TLSHYACMVD 559

Query: 528 IYAAAGQWDKVSEVREMM 545
           ++  AG   +  E  E M
Sbjct: 560 LFGRAGLLQEAQEFIEKM 577



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 97/339 (28%), Positives = 161/339 (47%), Gaps = 65/339 (19%)

Query: 225 LVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITW 284
           L++ +SK G    AR++F  MP R   SWN +++ Y K GD+DS+CE FD +  RD ++W
Sbjct: 55  LMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQRDSVSW 114

Query: 285 NSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVK 344
            +MI GY+  G++ +A+ ++  M+   + P+  TL + L++VA    L  G+ +HS+IVK
Sbjct: 115 TTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFTLTNVLASVAATRCLETGKKVHSFIVK 174

Query: 345 NGFVVDGVLGTLLIQMYSKC-------------------------------GSIESALTV 373
            G   +  +   L+ MY+KC                               G ++ A+  
Sbjct: 175 LGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQ 234

Query: 374 FRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGM-KPTAITFIGVLNACS---- 428
           F  ++++ +  W +MI G    G   +ALD+F+KM R  M  P   T   VL+AC+    
Sbjct: 235 FEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEK 294

Query: 429 -------HAGLVNDGRR----YFNMMINDY----GIEPT-------------IEHYGCLV 460
                  H+ +V  G        N +I+ Y    G+E               IE +  L+
Sbjct: 295 LCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALL 354

Query: 461 DILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
           D   + G + EAK+  +S+  R + V W +++ G   HG
Sbjct: 355 DGYIKLGDMNEAKNIFDSLKDR-DVVAWTAMIVGYEQHG 392



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 121/239 (50%), Gaps = 22/239 (9%)

Query: 68  INNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPC 127
           + +++ A++IFD  L+   +V +  +I  Y  +    EA+ LF  ++     P+++TL  
Sbjct: 360 LGDMNEAKNIFDS-LKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAA 418

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD-DK 186
           ++  A+ L ++  GKQIHG   K G  +   V ++L++MYAK G I    R FD +  ++
Sbjct: 419 MLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGSITSASRAFDLIRCER 478

Query: 187 DLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKC---GKVEI 237
           D VSW  +I    + G  E A++LF+ M      PD   +     V  FS C   G V  
Sbjct: 479 DTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITY-----VGVFSACTHAGLVNQ 533

Query: 238 AREIFYRMPNRN-----LVSWNAMINGYMKAGDVDSACELFDDMEIR-DLITWNSMIAG 290
            R+ F  M + +     L  +  M++ + +AG +  A E  + M I  D++TW S+++ 
Sbjct: 534 GRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSA 592


>gi|297739440|emb|CBI29622.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 240/587 (40%), Positives = 367/587 (62%), Gaps = 28/587 (4%)

Query: 120 PDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYA----------- 168
           PD F  P +IK A        G   H  V KLG G D FV ++++ MYA           
Sbjct: 28  PDAFVYPILIKSAG-----TGGIGFHAHVLKLGHGSDAFVRNAVIDMYARKVADWNAMVS 82

Query: 169 ---KFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCL 225
              K+      + +FD M ++++++W  ++ GY K  ++E A + FD MP+R + SW  +
Sbjct: 83  GYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAM 142

Query: 226 VDGFSKCGKVEIAREIFYRM--PNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLIT 283
           + G+++ G  E A  +F  M    RN V+WNAMI+ YM+ GD+DSA +LF+ M  R+++T
Sbjct: 143 LSGYAQNGLAEEALRLFDEMLGAYRNSVTWNAMISAYMRVGDLDSARKLFNTMPGRNVVT 202

Query: 284 WNSMIAGYELNGRFMEALELLETMLIGDVL-PNDATLVSALSAVAGLAVLNKGRWMHSYI 342
           WNSMIAGY  NG+   A+EL + M+    L P++ T+VS +SA   L  L  G W+  ++
Sbjct: 203 WNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFL 262

Query: 343 VKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQAL 402
            +N   +       +I MYS+CGS+E A  VF+ ++ + V  +  +I G   HG   +A+
Sbjct: 263 TENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAI 322

Query: 403 DLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDI 462
           +L + M   G++P  +TFIGVL ACSHAGL+ +GR+ F  +      +P I+HY C+VD+
Sbjct: 323 NLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIK-----DPAIDHYACMVDL 377

Query: 463 LCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCY 522
           L R G LE+AK T+E MPM P+  ++ SLL+ +R H   ++GE AAN L ++ PD  G +
Sbjct: 378 LGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNF 437

Query: 523 VVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIH 582
           ++LSNIYA+AG+W  V  +RE MKK G +K  G S +E+ G LH+F+V D+SH ++D+I+
Sbjct: 438 ILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIY 497

Query: 583 SKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRI 642
             L E+R K++ AG++ D + VL  +E+++++E  +  HSE+LAI + L+  ++ + IR+
Sbjct: 498 QLLIELRKKMREAGYIADKSCVLRDVEEEEKEEI-VGTHSEKLAICYALLVSEAGAVIRV 556

Query: 643 VKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           VKNLRVC DCH+  K++S +  R IIVRDN+RFH F +G CSCKD+W
Sbjct: 557 VKNLRVCWDCHTAIKMISKLEGRVIIVRDNNRFHCFNDGLCSCKDYW 603



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 111/227 (48%), Gaps = 12/227 (5%)

Query: 59  LLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLD-RF 117
           ++S Y+   + +L  AR +F+  +   ++V +N +I  Y  N +S  A+ LF +++  + 
Sbjct: 175 MISAYM--RVGDLDSARKLFN-TMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKK 231

Query: 118 LLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGR 177
           L PD  T+  VI     LGA++ G  +   + +          ++++ MY++ G ++  +
Sbjct: 232 LTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAK 291

Query: 178 RVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSK 231
           RVF  M  +D+VS+N LI G+   G    A+ L   M      PDR  F    ++   S 
Sbjct: 292 RVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTF--IGVLTACSH 349

Query: 232 CGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEI 278
            G +E  R++F  + +  +  +  M++   + G+++ A    + M +
Sbjct: 350 AGLLEEGRKVFESIKDPAIDHYACMVDLLGRVGELEDAKRTMERMPM 396


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 251/625 (40%), Positives = 367/625 (58%), Gaps = 23/625 (3%)

Query: 87  LVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHG 146
           LV +N ++     N++  EAL    +++   + PD FT+  V+   + L  ++ GK++H 
Sbjct: 267 LVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHA 326

Query: 147 LVFKLG-FGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVE 205
              K G    + FV S+LV MY    ++  GRRVFD M D+ +  WN +I GY +    +
Sbjct: 327 YALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDK 386

Query: 206 VAMKLFDEMPDRD--LFSWTCLVDGFSKC-------GKVEIAREIFYRMPNRNLVSWNAM 256
            A+ LF  M +    L + T +      C        K  I   +  R  +R+    N +
Sbjct: 387 EALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTL 446

Query: 257 INGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGD----- 311
           ++ Y + G +D A  +F  ME RDL+TWN+MI GY  +    +AL LL  M   +     
Sbjct: 447 MDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSK 506

Query: 312 ------VLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCG 365
                 + PN  TL++ L + A L+ L KG+ +H+Y +KN    D  +G+ L+ MY+KCG
Sbjct: 507 GASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCG 566

Query: 366 SIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN 425
            ++ +  VF  I +K V  W  +I+  GMHG   +A+DL   M   G+KP  +TFI V  
Sbjct: 567 CLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFA 626

Query: 426 ACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNF 485
           ACSH+G+V++G R F +M  DYG+EP+ +HY C+VD+L R G ++EA   +  MP   N 
Sbjct: 627 ACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNK 686

Query: 486 V-IWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREM 544
              W SLL  +R H N +IGE AA NLI++ P+    YV+L+NIY++AG WDK +EVR  
Sbjct: 687 AGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRN 746

Query: 545 MKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQV 604
           MK++G RK+PG S IEH   +H+FV GD SHPQ++++   L  +  +++  G+VPDT+ V
Sbjct: 747 MKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCV 806

Query: 605 LLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYN 664
           L  +E+  EKE  L  HSE+LAIAFG++N    + IR+ KNLRVCNDCH  TK +S I +
Sbjct: 807 LHNVEED-EKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVD 865

Query: 665 REIIVRDNSRFHHFKNGSCSCKDFW 689
           REII+RD  RFH FKNG+CSC D+W
Sbjct: 866 REIILRDVRRFHRFKNGTCSCGDYW 890



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 127/434 (29%), Positives = 216/434 (49%), Gaps = 17/434 (3%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           A SIF  I Q  S   +  L++  V +    EA+  + D++   + PDN+  P ++K  A
Sbjct: 51  APSIF--ISQSRSPEWWIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVA 108

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKF-VLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWN 192
            L  ++ GKQIH  V+K G+G D   V ++LV++Y K G+     +VFD + +++ VSWN
Sbjct: 109 DLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWN 168

Query: 193 CLIDGYVKKGEVEVAMKLFDEMPDRDL-FSWTCLVDGFSKCGKVEIAREIF-------YR 244
            LI       + E+A++ F  M D ++  S   LV   + C  + +   +        Y 
Sbjct: 169 SLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYG 228

Query: 245 MPNRNLVSW--NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALE 302
           +    L S+  N ++  Y K G + S+  L      RDL+TWN++++    N + +EALE
Sbjct: 229 LRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALE 288

Query: 303 LLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFV-VDGVLGTLLIQMY 361
            L  M++  V P++ T+ S L A + L +L  G+ +H+Y +KNG +  +  +G+ L+ MY
Sbjct: 289 YLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMY 348

Query: 362 SKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCR-MGMKPTAITF 420
             C  + S   VF  +  +K+G W AMI G   +    +AL LF  M    G+   + T 
Sbjct: 349 CNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTM 408

Query: 421 IGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP 480
            GV+ AC  +G  +        ++   G++        L+D+  R G ++ A      M 
Sbjct: 409 AGVVPACVRSGAFSRKEAIHGFVVKR-GLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKME 467

Query: 481 MRPNFVIWMSLLSG 494
            R + V W ++++G
Sbjct: 468 DR-DLVTWNTMITG 480



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 113/448 (25%), Positives = 204/448 (45%), Gaps = 28/448 (6%)

Query: 77  IFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLG 136
           +FDRI +  + V +N LI      ++   AL  F  +LD  + P +FTL  V+   + L 
Sbjct: 155 VFDRISER-NQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLP 213

Query: 137 ---AIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
               +  GKQ+H    + G   + F++++LV+MY K G++   + +  +   +DLV+WN 
Sbjct: 214 MPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNT 272

Query: 194 LIDGYVKKGEVEVAMKLFDEM----PDRDLFSWTCLVDGFSKCGKVEIAREIF-YRMPN- 247
           ++    +  ++  A++   EM     + D F+ + ++   S    +   +E+  Y + N 
Sbjct: 273 VLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNG 332

Query: 248 ---RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELL 304
               N    +A+++ Y     V S   +FD M  R +  WN+MIAGY  N    EAL L 
Sbjct: 333 SLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLF 392

Query: 305 ETM-LIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSK 363
             M     +L N  T+   + A       ++   +H ++VK G   D  +   L+ MYS+
Sbjct: 393 IGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSR 452

Query: 364 CGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKM-----------CRMG 412
            G I+ A+ +F  +  + +  W  MI G         AL L +KM            R+ 
Sbjct: 453 LGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVS 512

Query: 413 MKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEA 472
           +KP +IT + +L +C+    +  G+      I +  +   +     LVD+  + G L+ +
Sbjct: 513 LKPNSITLMTILPSCAALSALAKGKEIHAYAIKN-NLATDVAVGSALVDMYAKCGCLQMS 571

Query: 473 KSTIESMPMRPNFVIWMSLLSGARNHGN 500
           +   + +P + N + W  ++     HGN
Sbjct: 572 RKVFDQIPQK-NVITWNVIIMAYGMHGN 598



 Score = 47.4 bits (111), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 105/247 (42%), Gaps = 42/247 (17%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +++HA ++K NL     + S L+ +Y       L  +R +FD+I Q  +++ +N++I  Y
Sbjct: 537 KEIHAYAIKNNLATDVAVGSALVDMYAK--CGCLQMSRKVFDQIPQK-NVITWNVIIMAY 593

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
             +    EA+ L   ++ + + P+  T   V    +  G + EG +I   V K  +G + 
Sbjct: 594 GMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIF-YVMKPDYGVEP 652

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
              SS    YA                        C++D   + G ++ A +L + MP R
Sbjct: 653 ---SS--DHYA------------------------CVVDLLGRAGRIKEAYQLMNMMP-R 682

Query: 218 DL---FSWTCLVDGFSKCGKVEI----AREIFYRMPNRNLVSWNAMINGYMKAGDVDSAC 270
           D     +W+ L+        +EI    A+ +    PN     +  + N Y  AG  D A 
Sbjct: 683 DFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNV-ASHYVLLANIYSSAGLWDKAT 741

Query: 271 ELFDDME 277
           E+  +M+
Sbjct: 742 EVRRNMK 748


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 251/625 (40%), Positives = 367/625 (58%), Gaps = 23/625 (3%)

Query: 87  LVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHG 146
           LV +N ++     N++  EAL    +++   + PD FT+  V+   + L  ++ GK++H 
Sbjct: 267 LVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHA 326

Query: 147 LVFKLG-FGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVE 205
              K G    + FV S+LV MY    ++  GRRVFD M D+ +  WN +I GY +    +
Sbjct: 327 YALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDK 386

Query: 206 VAMKLFDEMPDRD--LFSWTCLVDGFSKC-------GKVEIAREIFYRMPNRNLVSWNAM 256
            A+ LF  M +    L + T +      C        K  I   +  R  +R+    N +
Sbjct: 387 EALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTL 446

Query: 257 INGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGD----- 311
           ++ Y + G +D A  +F  ME RDL+TWN+MI GY  +    +AL LL  M   +     
Sbjct: 447 MDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSK 506

Query: 312 ------VLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCG 365
                 + PN  TL++ L + A L+ L KG+ +H+Y +KN    D  +G+ L+ MY+KCG
Sbjct: 507 GASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCG 566

Query: 366 SIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN 425
            ++ +  VF  I +K V  W  +I+  GMHG   +A+DL   M   G+KP  +TFI V  
Sbjct: 567 CLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFA 626

Query: 426 ACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNF 485
           ACSH+G+V++G R F +M  DYG+EP+ +HY C+VD+L R G ++EA   +  MP   N 
Sbjct: 627 ACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNK 686

Query: 486 V-IWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREM 544
              W SLL  +R H N +IGE AA NLI++ P+    YV+L+NIY++AG WDK +EVR  
Sbjct: 687 AGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRN 746

Query: 545 MKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQV 604
           MK++G RK+PG S IEH   +H+FV GD SHPQ++++   L  +  +++  G+VPDT+ V
Sbjct: 747 MKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCV 806

Query: 605 LLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYN 664
           L  +E+  EKE  L  HSE+LAIAFG++N    + IR+ KNLRVCNDCH  TK +S I +
Sbjct: 807 LHNVEED-EKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVD 865

Query: 665 REIIVRDNSRFHHFKNGSCSCKDFW 689
           REII+RD  RFH FKNG+CSC D+W
Sbjct: 866 REIILRDVRRFHRFKNGTCSCGDYW 890



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 127/434 (29%), Positives = 216/434 (49%), Gaps = 17/434 (3%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           A SIF  I Q  S   +  L++  V +    EA+  + D++   + PDN+  P ++K  A
Sbjct: 51  APSIF--ISQSRSPEWWIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVA 108

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKF-VLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWN 192
            L  ++ GKQIH  V+K G+G D   V ++LV++Y K G+     +VFD + +++ VSWN
Sbjct: 109 DLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWN 168

Query: 193 CLIDGYVKKGEVEVAMKLFDEMPDRDL-FSWTCLVDGFSKCGKVEIAREIF-------YR 244
            LI       + E+A++ F  M D ++  S   LV   + C  + +   +        Y 
Sbjct: 169 SLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYG 228

Query: 245 MPNRNLVSW--NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALE 302
           +    L S+  N ++  Y K G + S+  L      RDL+TWN++++    N + +EALE
Sbjct: 229 LRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALE 288

Query: 303 LLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFV-VDGVLGTLLIQMY 361
            L  M++  V P++ T+ S L A + L +L  G+ +H+Y +KNG +  +  +G+ L+ MY
Sbjct: 289 YLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMY 348

Query: 362 SKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCR-MGMKPTAITF 420
             C  + S   VF  +  +K+G W AMI G   +    +AL LF  M    G+   + T 
Sbjct: 349 CNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTM 408

Query: 421 IGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP 480
            GV+ AC  +G  +        ++   G++        L+D+  R G ++ A      M 
Sbjct: 409 AGVVPACVRSGAFSRKEAIHGFVVKR-GLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKME 467

Query: 481 MRPNFVIWMSLLSG 494
            R + V W ++++G
Sbjct: 468 DR-DLVTWNTMITG 480



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 113/448 (25%), Positives = 204/448 (45%), Gaps = 28/448 (6%)

Query: 77  IFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLG 136
           +FDRI +  + V +N LI      ++   AL  F  +LD  + P +FTL  V+   + L 
Sbjct: 155 VFDRISER-NQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLP 213

Query: 137 ---AIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
               +  GKQ+H    + G   + F++++LV+MY K G++   + +  +   +DLV+WN 
Sbjct: 214 MPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNT 272

Query: 194 LIDGYVKKGEVEVAMKLFDEM----PDRDLFSWTCLVDGFSKCGKVEIAREIF-YRMPN- 247
           ++    +  ++  A++   EM     + D F+ + ++   S    +   +E+  Y + N 
Sbjct: 273 VLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNG 332

Query: 248 ---RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELL 304
               N    +A+++ Y     V S   +FD M  R +  WN+MIAGY  N    EAL L 
Sbjct: 333 SLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLF 392

Query: 305 ETM-LIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSK 363
             M     +L N  T+   + A       ++   +H ++VK G   D  +   L+ MYS+
Sbjct: 393 IGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSR 452

Query: 364 CGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKM-----------CRMG 412
            G I+ A+ +F  +  + +  W  MI G         AL L +KM            R+ 
Sbjct: 453 LGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVS 512

Query: 413 MKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEA 472
           +KP +IT + +L +C+    +  G+      I +  +   +     LVD+  + G L+ +
Sbjct: 513 LKPNSITLMTILPSCAALSALAKGKEIHAYAIKN-NLATDVAVGSALVDMYAKCGCLQMS 571

Query: 473 KSTIESMPMRPNFVIWMSLLSGARNHGN 500
           +   + +P + N + W  ++     HGN
Sbjct: 572 RKVFDQIPQK-NVITWNVIIMAYGMHGN 598



 Score = 47.4 bits (111), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 105/247 (42%), Gaps = 42/247 (17%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +++HA ++K NL     + S L+ +Y       L  +R +FD+I Q  +++ +N++I  Y
Sbjct: 537 KEIHAYAIKNNLATDVAVGSALVDMYAK--CGCLQMSRKVFDQIPQK-NVITWNVIIMAY 593

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
             +    EA+ L   ++ + + P+  T   V    +  G + EG +I   V K  +G + 
Sbjct: 594 GMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIF-YVMKPDYGVEP 652

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
              SS    YA                        C++D   + G ++ A +L + MP R
Sbjct: 653 ---SS--DHYA------------------------CVVDLLGRAGRIKEAYQLMNMMP-R 682

Query: 218 DL---FSWTCLVDGFSKCGKVEI----AREIFYRMPNRNLVSWNAMINGYMKAGDVDSAC 270
           D     +W+ L+        +EI    A+ +    PN     +  + N Y  AG  D A 
Sbjct: 683 DFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNV-ASHYVLLANIYSSAGLWDKAT 741

Query: 271 ELFDDME 277
           E+  +M+
Sbjct: 742 EVRRNMK 748


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 252/665 (37%), Positives = 388/665 (58%), Gaps = 18/665 (2%)

Query: 36  ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIK 95
           + +++H   +K      +  ++ L+ +Y    I  L  A S+FD I + P +V +N +I 
Sbjct: 129 QGRKIHGYLIKLGYDSDAFSANALVDMYAKVGI--LEDASSVFDEIAK-PDIVSWNAIIA 185

Query: 96  CYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF 155
             V ++  H AL L  ++    + P+ FTL   +K  A +   + G+Q+H  + K+  G 
Sbjct: 186 GCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGS 245

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP 215
           D F+   L+ MY+K   +D  R VF  M ++D+++WN +I G+ +  E E A  LF  M 
Sbjct: 246 DSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMH 305

Query: 216 DRDL-FSWTCLVDGFSKCGKVE---IAREIF-------YRMPNRNLVSWNAMINGYMKAG 264
              + F+ T L         ++   + R+I        +   N  +   N++I+ Y K G
Sbjct: 306 TEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVV---NSLIDTYGKCG 362

Query: 265 DVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS 324
            V+ A  +F++  I DL+ + S++  Y  +G+  EAL L   M    + P+     S L+
Sbjct: 363 HVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLN 422

Query: 325 AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGH 384
           A A L+   +G+ +H +I+K GF+ D   G  L+ MY+KCGSIE A   F  I  + +  
Sbjct: 423 ACASLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVS 482

Query: 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMI 444
           W+AMI GL  HG   +AL LF +M ++G+ P  IT + VL AC+HAGLV + + YFN M 
Sbjct: 483 WSAMIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLCACNHAGLVAEAKHYFNSMK 542

Query: 445 NDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIG 504
             +GIEP  EHY C++D+L R G LE A   +  MP + N ++W +LL  AR H N D+G
Sbjct: 543 ILFGIEPMQEHYACMIDLLGRAGKLEAAMELVNKMPFQANALVWGALLGAARIHKNIDLG 602

Query: 505 EYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGV 564
           E AA  L+ + P+  G +V+L+NIYA+ G WDKV+ VR +MK    +K+PG S +E +  
Sbjct: 603 EQAAEMLLALEPEKSGTHVLLANIYASVGMWDKVARVRRLMKDGKVKKEPGMSWLEVKDK 662

Query: 565 LHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSER 624
           ++ F+VGD+SH ++ EI++KL E+ + LK AG+VP   ++ L   ++ EKE  L +HSE+
Sbjct: 663 VYTFIVGDRSHSRSTEIYAKLDELSDLLKKAGYVP-MVEIDLHDVERSEKEQLLYHHSEK 721

Query: 625 LAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCS 684
           LA+AFGLI     +PIR+ KNLR+C DCH+V K +S I +REIIVRD +RFHHF+ GSCS
Sbjct: 722 LAVAFGLIATPPGAPIRVKKNLRICFDCHTVLKFISKIVSREIIVRDTNRFHHFREGSCS 781

Query: 685 CKDFW 689
           C ++W
Sbjct: 782 CGEYW 786



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 137/459 (29%), Positives = 220/459 (47%), Gaps = 45/459 (9%)

Query: 121 DNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVF 180
           + F  P V+K       +  GKQ+HG+V   GF  D+FV +SLV +YAK G     R +F
Sbjct: 9   NEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDARSLF 68

Query: 181 DAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKCGK 234
           DA+ D+ +VSWN L   YV       A+ LF +M      P+   FS + +++  +    
Sbjct: 69  DAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNE--FSLSSMINVCTGLED 126

Query: 235 VEIAREIFYRMP----NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAG 290
               R+I   +     + +  S NA+++ Y K G ++ A  +FD++   D+++WN++IAG
Sbjct: 127 SVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAG 186

Query: 291 YELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVD 350
             L+     ALELL  M    + PN  TL SAL A AG+A+   GR +HS ++K     D
Sbjct: 187 CVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSD 246

Query: 351 GVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCR 410
             LG  LI MYSKC S++ A  VF+ + ++ +  W A+I G   +    +A  LF  M  
Sbjct: 247 SFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHT 306

Query: 411 MGMKPTAITFIGVLNACS-----------HAGLVNDGRRYFNMMINDYGIEPTIEHYGCL 459
            G+     T   VL + +           HA  +  G  + N ++N             L
Sbjct: 307 EGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNS------------L 354

Query: 460 VDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIK-----V 514
           +D   + G++E+A    E  P+  + V++ SL++     G    GE A    ++     +
Sbjct: 355 IDTYGKCGHVEDATRVFEESPI-VDLVLFTSLVTAYAQDGQ---GEEALRLYLEMQDRGI 410

Query: 515 APDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKD 553
            PD+  C  +L N  A+   +++  +V   + K GF  D
Sbjct: 411 KPDSFVCSSLL-NACASLSAYEQGKQVHVHILKFGFMSD 448


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 245/658 (37%), Positives = 375/658 (56%), Gaps = 75/658 (11%)

Query: 106 ALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG----------- 154
           A+ +F  ++   + P  FT+  V+   A    +  G++IH  V KLG G           
Sbjct: 126 AIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLN 185

Query: 155 --------------FDKFVL------SSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCL 194
                         FD+  +      ++L+S+Y + G+ +L    F+ M D+D+VSWN +
Sbjct: 186 MYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSM 245

Query: 195 IDGYVKKGEVEVAMKLFDEM-------PD--------------------RDLFSW----- 222
           I GY ++G    A+ +F +M       PD                    + + ++     
Sbjct: 246 ISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAE 305

Query: 223 --------TCLVDGFSKCGKVEIAREIFY--RMPNRNLVSWNAMINGYMKAGDVDSACEL 272
                     L+  ++K G VEIAR I    R  N N++++ ++++GY K G+V  A E+
Sbjct: 306 TETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREI 365

Query: 273 FDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVL 332
           F+ +  RD++ W +MI GY  NG + +ALEL   M+     PN  TL + LS  + L +L
Sbjct: 366 FNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTIL 425

Query: 333 NKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS-KKKVGHWTAMIVG 391
             G+ +H+  +K G      +   LI MY+K G+I  A  VF   + KK++  WT+MI+ 
Sbjct: 426 EHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMA 485

Query: 392 LGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP 451
           L  HG+  +A++LF +M  +GMKP  IT++GVL+AC+H GLV  GR+Y+NMM   + IEP
Sbjct: 486 LAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEP 545

Query: 452 TIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNL 511
           T+ HY C++D+  R G L+EA   IESMP+ P+ + W SLL+  + H N D+ + AA  L
Sbjct: 546 TLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERL 605

Query: 512 IKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVG 571
           + + P   G Y+ L+N+Y+A G+W+  ++ R++MK RG RK+ G S I  +  +H F V 
Sbjct: 606 LLIDPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVE 665

Query: 572 DKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGL 631
           D  HPQ DEI+  ++E+  ++K  G +PDT  VL  +E++  KE  L+ HSE+LAIAFGL
Sbjct: 666 DVIHPQKDEIYKLMAEIWEEIKKMGFIPDTESVLHDLEEEV-KEQILKYHSEKLAIAFGL 724

Query: 632 INVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           +N    + +RI+KNLRVCNDCHS  K +S +  REIIVRD +RFHHFK+GSCSC+D+W
Sbjct: 725 LNTPENTALRIMKNLRVCNDCHSAIKFISKLVGREIIVRDATRFHHFKDGSCSCRDYW 782



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 136/508 (26%), Positives = 212/508 (41%), Gaps = 113/508 (22%)

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD 187
           +++ + R+     G+ +H  + K G     +++++L++ YAK G +     VFD M  K 
Sbjct: 16  ILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKS 75

Query: 188 LVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM-- 245
             SWN LI GY K+G  EV+ +L  EMPD D  SWT ++ G+++ G  + A  +F +M  
Sbjct: 76  TFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMIS 135

Query: 246 ----PNRNLVS---------------------------------WNAMINGYMKAGDVDS 268
               P++  VS                                   +++N Y K GD   
Sbjct: 136 ERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVI 195

Query: 269 ACELFDDMEI-------------------------------RDLITWNSMIAGYELNGRF 297
           A  +FD M +                               RD+++WNSMI+GY   G  
Sbjct: 196 AKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYN 255

Query: 298 MEALELLETMLIGDVL-PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTL 356
           +EAL +   ML    L P++ TL S LSA A L  LN G+ +H+YI++      G +G  
Sbjct: 256 LEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNA 315

Query: 357 LIQMYSKCGSIE---------------------------------SALTVFRAISKKKVG 383
           LI MY+K G +E                                  A  +F  +  + V 
Sbjct: 316 LISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVV 375

Query: 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMM 443
            WTAMIVG   +G+   AL+LF  M   G +P + T   +L+  S   ++  G++     
Sbjct: 376 AWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASA 435

Query: 444 INDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDI 503
           I   G   T      L+ +  +TG +  AK   +    +   V W S++     HG   +
Sbjct: 436 IKA-GESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHG---L 491

Query: 504 GEYAANNL-----IKVAPDTIGCYVVLS 526
           G+ A N       + + PD I    VLS
Sbjct: 492 GKEAINLFERMLSVGMKPDHITYVGVLS 519



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 94/372 (25%), Positives = 163/372 (43%), Gaps = 47/372 (12%)

Query: 225 LVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITW 284
           L+  ++K G +  A  +F  MP ++  SWN +I+GY K G+ + +  L  +M   D ++W
Sbjct: 51  LMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSW 110

Query: 285 NSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVK 344
            ++I GY   G F  A+ +   M+   V P+  T+ + LS+ A    L+ GR +HS++VK
Sbjct: 111 TAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVK 170

Query: 345 NGFVVDGVLGTLLIQMYSKC-------------------------------GSIESALTV 373
            G      + T L+ MY+KC                               G  E A + 
Sbjct: 171 LGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQ 230

Query: 374 FRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMC-RMGMKPTAITFIGVLNACSHAGL 432
           F  +  + +  W +MI G    G   +AL +F+KM     +KP   T   +L+AC++   
Sbjct: 231 FEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEK 290

Query: 433 VNDGRRYFNMMINDYGIEPTIEHYG----CLVDILCRTGYLEEAKSTIE-SMPMRPNFVI 487
           +N G++     I+ Y +    E  G     L+ +  ++G +E A+  +E +     N + 
Sbjct: 291 LNIGKQ-----IHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIA 345

Query: 488 WMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547
           + SLL G    GN        N   K+    +  +  +   Y   G W+   E+  +M  
Sbjct: 346 FTSLLDGYTKLGNVKPAREIFN---KLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVN 402

Query: 548 RGFRKDPGSSSI 559
            G   +P S ++
Sbjct: 403 EG--PEPNSYTL 412


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 245/664 (36%), Positives = 397/664 (59%), Gaps = 14/664 (2%)

Query: 36  ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIK 95
           + +++H L +K        I++  +  Y       +  A ++FD ++    +  +N +I 
Sbjct: 157 DGRKVHCLVLKLGFECDVYIAASFIHFY--SRFGFVSLACNLFDNMMIR-DIGTWNAMIS 213

Query: 96  CYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF 155
            +  N +  EAL +F ++  + +  D+ T+  ++    +L  I  G  IH    KLG  F
Sbjct: 214 GFYLNGKVAEALEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEF 273

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP 215
           D FV ++L++MYAKFGE+     +F+ M  +D+VSWN L+  + +  +  +A+ ++++M 
Sbjct: 274 DLFVCNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMH 333

Query: 216 D----RDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR-----NLVSWNAMINGYMKAGDV 266
                 DL +   L    ++ G    +R I   +  R     ++   NA+I+ Y K G +
Sbjct: 334 SIGVVPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFI 393

Query: 267 DSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETM-LIGDVLPNDATLVSALSA 325
           DSA ++F+ + ++D+I+WNS+I GY  NG   EA+++  +M      +PN  T VS L+A
Sbjct: 394 DSARKVFEGLPVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTA 453

Query: 326 VAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHW 385
            + L  L +G   H  ++KN    D  + T L+ MY KCG +  AL++F  +  +    W
Sbjct: 454 HSQLGALKQGMKAHGQLIKNFLYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQSSVSW 513

Query: 386 TAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN 445
            A+I   G+HG   +A+ LF +M   G+KP  ITF+ +L+ACSH+GLV++G+  F +M  
Sbjct: 514 NAIISCHGLHGYGLKAVKLFKEMQSEGVKPDHITFVSLLSACSHSGLVDEGQWCFQLMQE 573

Query: 446 DYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGE 505
            YGI P+++HYGC+VD+  R G+LE+A + +++MP+RP+  +W +LL   R H N ++  
Sbjct: 574 TYGIRPSLKHYGCMVDLFGRAGHLEKAFNFVKNMPVRPDVSVWGALLGACRIHENVELVR 633

Query: 506 YAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVL 565
             +++L+KV  + +G YV+LSNIYA  G W+ V EVR + + RG +K PG SSIE    +
Sbjct: 634 TVSDHLLKVESENVGYYVLLSNIYAKLGHWEGVDEVRSLARDRGLKKTPGWSSIEVDKKI 693

Query: 566 HEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERL 625
             F  G+++HP+ +EI+S+L  +  K+K+ G+VPD   VL  +ED  EKE  L +HSERL
Sbjct: 694 DVFYTGNQTHPKCEEIYSELRNLTAKMKSIGYVPDYNFVLQDVEDD-EKENILTSHSERL 752

Query: 626 AIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSC 685
           A+AFG+I+   ++ ++I KNLRVC DCH+ TK +S I  REIIVRD++RFHHFK+G CSC
Sbjct: 753 AMAFGIISTPPKTTLQIFKNLRVCGDCHNATKFISKITEREIIVRDSNRFHHFKDGVCSC 812

Query: 686 KDFW 689
            D+W
Sbjct: 813 GDYW 816



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 153/516 (29%), Positives = 266/516 (51%), Gaps = 25/516 (4%)

Query: 37  TQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKC 96
            +QLHAL V +       +S++L++ Y    + ++ +AR  FD+I Q   +  +N +I  
Sbjct: 59  AKQLHALLVVSGKTQSIFLSAKLINRYA--FLGDIPHARLTFDQI-QTKDVYTWNSMISA 115

Query: 97  YVFNQRSHEALTLFCDLLD-RFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF 155
           Y      H A+  F + L   FL  D++T P VI+     G + +G+++H LV KLGF  
Sbjct: 116 YARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRAC---GNLDDGRKVHCLVLKLGFEC 172

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP 215
           D ++ +S +  Y++FG + L   +FD M  +D+ +WN +I G+   G+V  A+++FDEM 
Sbjct: 173 DVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMR 232

Query: 216 DRDLFSWTCLVDG-FSKCGKVE--IAREIFYRMPNR-----NLVSWNAMINGYMKAGDVD 267
            + +   +  +      C +++  I+  + +    +     +L   NA+IN Y K G++ 
Sbjct: 233 FKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELR 292

Query: 268 SACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVA 327
           SA  +F+ M++RD+++WNS++A +E N + + AL +   M    V+P+  TLVS  S  A
Sbjct: 293 SAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAA 352

Query: 328 GLAVLNKGRWMHSYIVKN-GFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWT 386
            L      R +H ++ +   F+ D  LG  +I MY+K G I+SA  VF  +  K V  W 
Sbjct: 353 ELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWN 412

Query: 387 AMIVGLGMHGMATQALDLFNKM-CRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN 445
           ++I G   +G+A +A+D+++ M    G  P   T++ +L A S  G +  G +    +I 
Sbjct: 413 SLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQLIK 472

Query: 446 DYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLS--GARNHGNKDI 503
           ++ +   I    CLVD+  + G L +A S    +P + + V W +++S  G   +G K +
Sbjct: 473 NF-LYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQSS-VSWNAIISCHGLHGYGLKAV 530

Query: 504 GEYAANNLIKVAPDTIGCYVVLSNIYAAA----GQW 535
             +       V PD I    +LS    +     GQW
Sbjct: 531 KLFKEMQSEGVKPDHITFVSLLSACSHSGLVDEGQW 566



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 152/330 (46%), Gaps = 19/330 (5%)

Query: 229 FSKCGKVEIAREIFYRM----PNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITW 284
           F  C KV +A+++   +      +++     +IN Y   GD+  A   FD ++ +D+ TW
Sbjct: 50  FLYCTKVHLAKQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTW 109

Query: 285 NSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVK 344
           NSMI+ Y   G F  A++     L    L +D      +    G   L+ GR +H  ++K
Sbjct: 110 NSMISAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACG--NLDDGRKVHCLVLK 167

Query: 345 NGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDL 404
            GF  D  +    I  YS+ G +  A  +F  +  + +G W AMI G  ++G   +AL++
Sbjct: 168 LGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEV 227

Query: 405 FNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEH--YGC--LV 460
           F++M    +   ++T   +L  C     +  G     ++I+ Y I+  +E   + C  L+
Sbjct: 228 FDEMRFKSVSMDSVTISSLLPICVQLDDIISG-----VLIHVYAIKLGLEFDLFVCNALI 282

Query: 461 DILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDI--GEYAANNLIKVAPDT 518
           ++  + G L  A++    M +R + V W SLL+    +    I  G Y   + I V PD 
Sbjct: 283 NMYAKFGELRSAETIFNQMKVR-DIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDL 341

Query: 519 IGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548
           +   V L+++ A  G +     +   + +R
Sbjct: 342 L-TLVSLASVAAELGNFLSSRSIHGFVTRR 370


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 239/665 (35%), Positives = 390/665 (58%), Gaps = 13/665 (1%)

Query: 33  THKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNL 92
           +  + +QLHA  ++T  + H+  +S ++S+Y +  +  LH A  +F + L+ P ++ +  
Sbjct: 20  SKSQAKQLHAQFIRTQSLSHTS-ASIVISIYTN--LKLLHEALLVF-KTLESPPVLAWKS 75

Query: 93  LIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLG 152
           +I+C+        AL  F ++      PD+   P V+K    +  ++ G+ +HG + +LG
Sbjct: 76  VIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLG 135

Query: 153 FGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFD 212
              D +  ++L++MY+K   ID  R+VF+ M  KD+VS+N +I GY + G  E A+++  
Sbjct: 136 MDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVR 195

Query: 213 EMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS----WNAMINGYMKAG 264
           EM   DL    F+ + ++  FS+   V   +EI   +  + + S     +++++ Y K+ 
Sbjct: 196 EMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSA 255

Query: 265 DVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS 324
            ++ +  +F  +  RD I+WNS++AGY  NGR+ EAL L   M+   V P      S + 
Sbjct: 256 RIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIP 315

Query: 325 AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGH 384
           A A LA L+ G+ +H Y+++ GF  +  + + L+ MYSKCG+I++A  +F  ++      
Sbjct: 316 ACAHLATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVS 375

Query: 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMI 444
           WTA+I+G  +HG   +A+ LF +M R G+KP  + F+ VL ACSH GLV++   YFN M 
Sbjct: 376 WTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMT 435

Query: 445 NDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIG 504
             YG+   +EHY  + D+L R G LEEA   I  M + P   +W +LLS    H N ++ 
Sbjct: 436 KVYGLNQELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTGSVWSTLLSSCSVHKNLELA 495

Query: 505 EYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGV 564
           E  A  +  +  + +G YV++ N+YA+ G+W +++++R  ++K+G RK P  S IE +  
Sbjct: 496 EKVAEKIFTIDSENMGAYVLMCNMYASNGRWKEMAKLRLRVRKKGLRKKPACSWIEMKNK 555

Query: 565 LHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSER 624
            H FV GD+SHP  D I+  L  +  +++  G+V DT+ VL  ++++ ++E  L  HSER
Sbjct: 556 THGFVSGDRSHPSMDRINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKREL-LFGHSER 614

Query: 625 LAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCS 684
           LA+AFG+IN +  + IR+ KN+R+C DCH   K +S I  REIIVRDNSRFHHF  GSCS
Sbjct: 615 LAVAFGIINTEPGTTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGSCS 674

Query: 685 CKDFW 689
           C D+W
Sbjct: 675 CGDYW 679


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 251/625 (40%), Positives = 367/625 (58%), Gaps = 23/625 (3%)

Query: 87  LVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHG 146
           LV +N ++     N++  EAL    +++   + PD FT+  V+   + L  ++ GK++H 
Sbjct: 180 LVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHA 239

Query: 147 LVFKLG-FGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVE 205
              K G    + FV S+LV MY    ++  GRRVFD M D+ +  WN +I GY +    +
Sbjct: 240 YALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDK 299

Query: 206 VAMKLFDEMPDRD--LFSWTCLVDGFSKC-------GKVEIAREIFYRMPNRNLVSWNAM 256
            A+ LF  M +    L + T +      C        K  I   +  R  +R+    N +
Sbjct: 300 EALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTL 359

Query: 257 INGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGD----- 311
           ++ Y + G +D A  +F  ME RDL+TWN+MI GY  +    +AL LL  M   +     
Sbjct: 360 MDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSK 419

Query: 312 ------VLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCG 365
                 + PN  TL++ L + A L+ L KG+ +H+Y +KN    D  +G+ L+ MY+KCG
Sbjct: 420 GASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCG 479

Query: 366 SIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN 425
            ++ +  VF  I +K V  W  +I+  GMHG   +A+DL   M   G+KP  +TFI V  
Sbjct: 480 CLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFA 539

Query: 426 ACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNF 485
           ACSH+G+V++G R F +M  DYG+EP+ +HY C+VD+L R G ++EA   +  MP   N 
Sbjct: 540 ACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNK 599

Query: 486 V-IWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREM 544
              W SLL  +R H N +IGE AA NLI++ P+    YV+L+NIY++AG WDK +EVR  
Sbjct: 600 AGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRN 659

Query: 545 MKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQV 604
           MK++G RK+PG S IEH   +H+FV GD SHPQ++++   L  +  +++  G+VPDT+ V
Sbjct: 660 MKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCV 719

Query: 605 LLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYN 664
           L  +E+  EKE  L  HSE+LAIAFG++N    + IR+ KNLRVCNDCH  TK +S I +
Sbjct: 720 LHNVEED-EKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVD 778

Query: 665 REIIVRDNSRFHHFKNGSCSCKDFW 689
           REII+RD  RFH FKNG+CSC D+W
Sbjct: 779 REIILRDVRRFHRFKNGTCSCGDYW 803



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 115/388 (29%), Positives = 196/388 (50%), Gaps = 15/388 (3%)

Query: 120 PDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKF-VLSSLVSMYAKFGEIDLGRR 178
           PDN+  P ++K  A L  ++ GKQIH  V+K G+G D   V ++LV++Y K G+     +
Sbjct: 8   PDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYK 67

Query: 179 VFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLF-SWTCLVDGFSKCGKVEI 237
           VFD + +++ VSWN LI       + E+A++ F  M D ++  S   LV   + C  + +
Sbjct: 68  VFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPM 127

Query: 238 AREIF-------YRMPNRNLVSW--NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMI 288
              +        Y +    L S+  N ++  Y K G + S+  L      RDL+TWN+++
Sbjct: 128 PEGLMMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVL 187

Query: 289 AGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFV 348
           +    N + +EALE L  M++  V P++ T+ S L A + L +L  G+ +H+Y +KNG +
Sbjct: 188 SSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSL 247

Query: 349 -VDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNK 407
             +  +G+ L+ MY  C  + S   VF  +  +K+G W AMI G   +    +AL LF  
Sbjct: 248 DENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIG 307

Query: 408 MCR-MGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRT 466
           M    G+   + T  GV+ AC  +G  +  +   +  +   G++        L+D+  R 
Sbjct: 308 MEESAGLLANSTTMAGVVPACVRSGAFSR-KEAIHGFVVKRGLDRDRFVQNTLMDMYSRL 366

Query: 467 GYLEEAKSTIESMPMRPNFVIWMSLLSG 494
           G ++ A      M  R + V W ++++G
Sbjct: 367 GKIDIAMRIFGKMEDR-DLVTWNTMITG 393



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 113/448 (25%), Positives = 204/448 (45%), Gaps = 28/448 (6%)

Query: 77  IFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLG 136
           +FDRI +  + V +N LI      ++   AL  F  +LD  + P +FTL  V+   + L 
Sbjct: 68  VFDRISER-NQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLP 126

Query: 137 ---AIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
               +  GKQ+H    + G   + F++++LV+MY K G++   + +  +   +DLV+WN 
Sbjct: 127 MPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNT 185

Query: 194 LIDGYVKKGEVEVAMKLFDEM----PDRDLFSWTCLVDGFSKCGKVEIAREIF-YRMPN- 247
           ++    +  ++  A++   EM     + D F+ + ++   S    +   +E+  Y + N 
Sbjct: 186 VLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNG 245

Query: 248 ---RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELL 304
               N    +A+++ Y     V S   +FD M  R +  WN+MIAGY  N    EAL L 
Sbjct: 246 SLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLF 305

Query: 305 ETM-LIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSK 363
             M     +L N  T+   + A       ++   +H ++VK G   D  +   L+ MYS+
Sbjct: 306 IGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSR 365

Query: 364 CGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKM-----------CRMG 412
            G I+ A+ +F  +  + +  W  MI G         AL L +KM            R+ 
Sbjct: 366 LGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVS 425

Query: 413 MKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEA 472
           +KP +IT + +L +C+    +  G+      I +  +   +     LVD+  + G L+ +
Sbjct: 426 LKPNSITLMTILPSCAALSALAKGKEIHAYAIKN-NLATDVAVGSALVDMYAKCGCLQMS 484

Query: 473 KSTIESMPMRPNFVIWMSLLSGARNHGN 500
           +   + +P + N + W  ++     HGN
Sbjct: 485 RKVFDQIPQK-NVITWNVIIMAYGMHGN 511



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 93/196 (47%), Gaps = 17/196 (8%)

Query: 307 MLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV-LGTLLIQMYSKCG 365
           M++  + P++    + L AVA L  +  G+ +H+++ K G+ VD V +   L+ +Y KCG
Sbjct: 1   MIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCG 60

Query: 366 SIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN 425
              +   VF  IS++    W ++I  L        AL+ F  M    ++P++ T + V+ 
Sbjct: 61  DFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVT 120

Query: 426 ACSH----AGLVNDGRRYFNMM----INDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIE 477
           ACS+     GL+   + +   +    +N + I   +  YG       + G L  +K  + 
Sbjct: 121 ACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLVAMYG-------KLGKLASSKVLLG 173

Query: 478 SMPMRPNFVIWMSLLS 493
           S   R + V W ++LS
Sbjct: 174 SFGGR-DLVTWNTVLS 188



 Score = 47.4 bits (111), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 105/247 (42%), Gaps = 42/247 (17%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +++HA ++K NL     + S L+ +Y       L  +R +FD+I Q  +++ +N++I  Y
Sbjct: 450 KEIHAYAIKNNLATDVAVGSALVDMYAK--CGCLQMSRKVFDQIPQ-KNVITWNVIIMAY 506

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
             +    EA+ L   ++ + + P+  T   V    +  G + EG +I   V K  +G + 
Sbjct: 507 GMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIF-YVMKPDYGVEP 565

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
              SS    YA                        C++D   + G ++ A +L + MP R
Sbjct: 566 ---SS--DHYA------------------------CVVDLLGRAGRIKEAYQLMNMMP-R 595

Query: 218 DL---FSWTCLVDGFSKCGKVEI----AREIFYRMPNRNLVSWNAMINGYMKAGDVDSAC 270
           D     +W+ L+        +EI    A+ +    PN     +  + N Y  AG  D A 
Sbjct: 596 DFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNV-ASHYVLLANIYSSAGLWDKAT 654

Query: 271 ELFDDME 277
           E+  +M+
Sbjct: 655 EVRRNMK 661


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 245/658 (37%), Positives = 375/658 (56%), Gaps = 75/658 (11%)

Query: 106 ALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG----------- 154
           A+ +F  ++   + P  FT+  V+   A    +  G++IH  V KLG G           
Sbjct: 126 AIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLN 185

Query: 155 --------------FDKFVL------SSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCL 194
                         FD+  +      ++L+S+Y + G+ +L    F+ M D+D+VSWN +
Sbjct: 186 MYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSM 245

Query: 195 IDGYVKKGEVEVAMKLFDEM-------PD--------------------RDLFSW----- 222
           I GY ++G    A+ +F +M       PD                    + + ++     
Sbjct: 246 ISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAE 305

Query: 223 --------TCLVDGFSKCGKVEIAREIFY--RMPNRNLVSWNAMINGYMKAGDVDSACEL 272
                     L+  ++K G VEIAR I    R  N N++++ ++++GY K G+V  A E+
Sbjct: 306 TETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREI 365

Query: 273 FDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVL 332
           F+ +  RD++ W +MI GY  NG + +ALEL   M+     PN  TL + LS  + L +L
Sbjct: 366 FNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTIL 425

Query: 333 NKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS-KKKVGHWTAMIVG 391
             G+ +H+  +K G      +   LI MY+K G+I  A  VF   + KK++  WT+MI+ 
Sbjct: 426 EHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMA 485

Query: 392 LGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP 451
           L  HG+  +A++LF +M  +GMKP  IT++GVL+AC+H GLV  GR+Y+NMM   + IEP
Sbjct: 486 LAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEP 545

Query: 452 TIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNL 511
           T+ HY C++D+  R G L+EA   IESMP+ P+ + W SLL+  + H N D+ + AA  L
Sbjct: 546 TLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERL 605

Query: 512 IKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVG 571
           + + P   G Y+ L+N+Y+A G+W+  ++ R++MK RG RK+ G S I  +  +H F V 
Sbjct: 606 LLIDPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVE 665

Query: 572 DKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGL 631
           D  HPQ DEI+  ++E+  ++K  G +PDT  VL  +E++  KE  L+ HSE+LAIAFGL
Sbjct: 666 DVIHPQKDEIYKLMAEIWEEIKKMGFIPDTESVLHDLEEEV-KEQILKYHSEKLAIAFGL 724

Query: 632 INVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           +N    + +RI+KNLRVCNDCHS  K +S +  REIIVRD +RFHHFK+GSCSC+D+W
Sbjct: 725 LNTPENTALRIMKNLRVCNDCHSAIKFISKLVGREIIVRDATRFHHFKDGSCSCRDYW 782



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 136/508 (26%), Positives = 212/508 (41%), Gaps = 113/508 (22%)

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD 187
           +++ + R+     G+ +H  + K G     +++++L++ YAK G +     VFD M  K 
Sbjct: 16  ILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKS 75

Query: 188 LVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM-- 245
             SWN LI GY K+G  EV+ +L  EMPD D  SWT ++ G+++ G  + A  +F +M  
Sbjct: 76  TFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMIS 135

Query: 246 ----PNRNLVS---------------------------------WNAMINGYMKAGDVDS 268
               P++  VS                                   +++N Y K GD   
Sbjct: 136 ERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVI 195

Query: 269 ACELFDDMEI-------------------------------RDLITWNSMIAGYELNGRF 297
           A  +FD M +                               RD+++WNSMI+GY   G  
Sbjct: 196 AKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYN 255

Query: 298 MEALELLETMLIGDVL-PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTL 356
           +EAL +   ML    L P++ TL S LSA A L  LN G+ +H+YI++      G +G  
Sbjct: 256 LEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNA 315

Query: 357 LIQMYSKCGSIE---------------------------------SALTVFRAISKKKVG 383
           LI MY+K G +E                                  A  +F  +  + V 
Sbjct: 316 LISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVV 375

Query: 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMM 443
            WTAMIVG   +G+   AL+LF  M   G +P + T   +L+  S   ++  G++     
Sbjct: 376 AWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASA 435

Query: 444 INDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDI 503
           I   G   T      L+ +  +TG +  AK   +    +   V W S++     HG   +
Sbjct: 436 IKA-GESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHG---L 491

Query: 504 GEYAANNL-----IKVAPDTIGCYVVLS 526
           G+ A N       + + PD I    VLS
Sbjct: 492 GKEAINLFERMLSVGMKPDHITYVGVLS 519



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 94/372 (25%), Positives = 163/372 (43%), Gaps = 47/372 (12%)

Query: 225 LVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITW 284
           L+  ++K G +  A  +F  MP ++  SWN +I+GY K G+ + +  L  +M   D ++W
Sbjct: 51  LMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSW 110

Query: 285 NSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVK 344
            ++I GY   G F  A+ +   M+   V P+  T+ + LS+ A    L+ GR +HS++VK
Sbjct: 111 TAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVK 170

Query: 345 NGFVVDGVLGTLLIQMYSKC-------------------------------GSIESALTV 373
            G      + T L+ MY+KC                               G  E A + 
Sbjct: 171 LGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQ 230

Query: 374 FRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMC-RMGMKPTAITFIGVLNACSHAGL 432
           F  +  + +  W +MI G    G   +AL +F+KM     +KP   T   +L+AC++   
Sbjct: 231 FEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEK 290

Query: 433 VNDGRRYFNMMINDYGIEPTIEHYG----CLVDILCRTGYLEEAKSTIE-SMPMRPNFVI 487
           +N G++     I+ Y +    E  G     L+ +  ++G +E A+  +E +     N + 
Sbjct: 291 LNIGKQ-----IHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIA 345

Query: 488 WMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547
           + SLL G    GN        N   K+    +  +  +   Y   G W+   E+  +M  
Sbjct: 346 FTSLLDGYTKLGNVKPAREIFN---KLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVN 402

Query: 548 RGFRKDPGSSSI 559
            G   +P S ++
Sbjct: 403 EG--PEPNSYTL 412


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 251/657 (38%), Positives = 388/657 (59%), Gaps = 10/657 (1%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYV 98
           Q+HA+ VK        + + L+SLY    +  L  AR +FD+ ++    V +N +I  YV
Sbjct: 215 QVHAMVVKHGFEEAIPVFNSLISLY--SRLGMLRDARDVFDK-MEIRDWVTWNSMIAGYV 271

Query: 99  FNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKF 158
            N +  E   +F  +    + P + T   VIK  A L  +   K +     K GF  D+ 
Sbjct: 272 RNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQI 331

Query: 159 VLSSLVSMYAKFGEIDLGRRVFDAMDD-KDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
           V+++L+   +K  E+D    +F  M++ K++VSW  +I G ++ G  + A+ LF +M   
Sbjct: 332 VITALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRRE 391

Query: 218 DL----FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELF 273
            +    F+++ ++         E+  E+      R+     A+++ Y+K G+   A ++F
Sbjct: 392 GVKPNHFTYSAILTVHYPVFVSEMHAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVF 451

Query: 274 DDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAG-LAVL 332
           + +E +DL+ W++M+AGY   G   EA +L   ++   + PN+ T  S ++A A   A  
Sbjct: 452 EIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAA 511

Query: 333 NKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGL 392
            +G+  H+Y +K        + + L+ MY+K G+I+SA  VF+   ++ +  W +MI G 
Sbjct: 512 EQGKQFHAYAIKMRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQKERDLVSWNSMISGY 571

Query: 393 GMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT 452
             HG A +AL++F++M +  M   A+TFIGV+ AC+HAGLV  G++YFN MIND+ I PT
Sbjct: 572 SQHGQAKKALEVFDEMQKRNMDVDAVTFIGVITACTHAGLVEKGQKYFNSMINDHHINPT 631

Query: 453 IEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLI 512
           ++HY C++D+  R G LE+A   I  MP  P   +W +LL  AR H N ++GE AA  LI
Sbjct: 632 MKHYSCMIDLYSRAGMLEKAMGIINEMPFPPGATVWRTLLGAARVHRNVELGELAAEKLI 691

Query: 513 KVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGD 572
            + P+    YV+LSN+YAAAG W + + VR++M KR  +K+PG S IE +   + F+ GD
Sbjct: 692 SLQPEDSAAYVLLSNMYAAAGNWQERTNVRKLMDKRKVKKEPGYSWIEVKNKTYSFLAGD 751

Query: 573 KSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLI 632
            +HP +++I+SKLSE+  +LK AG+ PDT  V   IED+ +KE  L +HSERLAIAFGLI
Sbjct: 752 LTHPLSNQIYSKLSELSIRLKDAGYQPDTKNVFHDIEDE-QKETILSHHSERLAIAFGLI 810

Query: 633 NVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
                 PI+IVKNLRVC DCH+ TKL+S +  R I+VRD++RFHHFK+G CSC D+W
Sbjct: 811 ATPPEIPIQIVKNLRVCGDCHNFTKLVSLVEQRYIVVRDSNRFHHFKDGLCSCGDYW 867



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 147/483 (30%), Positives = 234/483 (48%), Gaps = 41/483 (8%)

Query: 52  HSGISSRLLSLYV--DPHINNLHYARSIFDRILQHPS-LVLYNLLIKCYVFNQRSHEALT 108
           H  IS + +S  V   PHI     A ++FD+I   P+ L  +N L+  Y  ++++ EAL 
Sbjct: 25  HYSISLKFISNTVLCVPHI-----AHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALN 79

Query: 109 LFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYA 168
           LF  LL   L PD  TL CV    A     K G+Q+H    K G      V +SLV MY 
Sbjct: 80  LFVSLLHSSLQPDESTLSCVFNICAGSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYM 139

Query: 169 KFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDRDLFSW 222
           K   ++ GRRVFD M ++++VSW  L+ GY   G      +LF +M      P+R  ++ 
Sbjct: 140 KTENVNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVWELFCQMQYEGVLPNR--YTV 197

Query: 223 TCLVDGFSKCGKVEIAREIFYRMPNRNLVS----WNAMINGYMKAGDVDSACELFDDMEI 278
           + ++      G V I  ++   +           +N++I+ Y + G +  A ++FD MEI
Sbjct: 198 STVIAALVNEGVVGIGLQVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEI 257

Query: 279 RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWM 338
           RD +TWNSMIAGY  NG+ +E  E+   M +  V P   T  S + + A L  L   + M
Sbjct: 258 RDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLM 317

Query: 339 HSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK-KKVGHWTAMIVGLGMHGM 397
               +K+GF  D ++ T L+   SKC  ++ AL++F  + + K V  WTAMI G   +G 
Sbjct: 318 QCKALKSGFTTDQIVITALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGG 377

Query: 398 ATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHY- 456
             QA++LF++M R G+KP   T+  +L              ++ + +++   E    +Y 
Sbjct: 378 NDQAVNLFSQMRREGVKPNHFTYSAILTV------------HYPVFVSEMHAEVIKTNYE 425

Query: 457 ------GCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANN 510
                   L+D   + G   +A    E +  + + + W ++L+G    G  +      + 
Sbjct: 426 RSSSVGTALLDAYVKLGNTIDAVKVFEIIEAK-DLMAWSAMLAGYAQTGETEEAAKLFHQ 484

Query: 511 LIK 513
           LIK
Sbjct: 485 LIK 487



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 135/520 (25%), Positives = 225/520 (43%), Gaps = 87/520 (16%)

Query: 25  WNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQH 84
           +NI   S   K  +Q+H   VK  L+ H  + + L+ +Y+     N++  R +FD + + 
Sbjct: 100 FNICAGSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMK--TENVNDGRRVFDEMGER 157

Query: 85  PSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQI 144
            ++V +  L+  Y +N        LFC +    +LP+ +T+  VI      G +  G Q+
Sbjct: 158 -NVVSWTSLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQV 216

Query: 145 HGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEV 204
           H +V K GF     V +SL+S+Y++ G +   R VFD M+ +D V+WN +I GYV+ G+ 
Sbjct: 217 HAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQD 276

Query: 205 EVAMKLFDEM------PDRDLFS---------------------------------WTCL 225
               ++F++M      P    F+                                  T L
Sbjct: 277 LEVFEIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITAL 336

Query: 226 VDGFSKCGKVEIAREIFYRMPN-RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITW 284
           +   SKC +++ A  +F  M   +N+VSW AMI+G ++ G  D A  LF  M        
Sbjct: 337 MVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRRE----- 391

Query: 285 NSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVK 344
                                      V PN  T  + L+    + V      MH+ ++K
Sbjct: 392 --------------------------GVKPNHFTYSAILTVHYPVFVSE----MHAEVIK 421

Query: 345 NGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDL 404
             +     +GT L+  Y K G+   A+ VF  I  K +  W+AM+ G    G   +A  L
Sbjct: 422 TNYERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKL 481

Query: 405 FNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGC----LV 460
           F+++ + G+KP   TF  V+NAC+      +  + F+     Y I+  + +  C    LV
Sbjct: 482 FHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQFHA----YAIKMRLNNALCVSSALV 537

Query: 461 DILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGN 500
            +  + G ++ A    +    R + V W S++SG   HG 
Sbjct: 538 TMYAKRGNIDSAHEVFKRQKER-DLVSWNSMISGYSQHGQ 576


>gi|326497745|dbj|BAK05962.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 742

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 277/735 (37%), Positives = 398/735 (54%), Gaps = 85/735 (11%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYV------DPHINNLHYARSIFDRILQHPSLV 88
           ++  +LHAL   +  + H   ++ LL+         DP   +L YA S+FDR +   + +
Sbjct: 13  RQATELHALVTTSGRLLHPPSAAHLLNSLTSCISPSDP--LHLRYALSLFDR-MPCSTFL 69

Query: 89  LYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGA-IKEGKQIHGL 147
               L  C+  +      + L+  +    + PD FT   + K  AR GA +  G+ +H  
Sbjct: 70  FDTALRACFRASSGPDRPIILYRRMHGVDVPPDAFTFHFLFKCCARGGAHVLLGRMLHAA 129

Query: 148 VFK-LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC------------- 193
            F+ L       + S ++ MYA+ G     RR FD    KD+V+W               
Sbjct: 130 CFRTLLPSAVPLIASPIIHMYAELGLPGDARRAFDEASVKDVVAWTTVISGLAKMGLLDD 189

Query: 194 ------------------LIDGYVKKGEVEVAMKLFDEM------PD------------- 216
                             LI GY + G    A+  F+ M      PD             
Sbjct: 190 ARRLLARAPVRNVVTWTGLISGYSRAGRAAEAVDCFNSMLSDGIAPDEVTVIGMLSACGQ 249

Query: 217 -RDLFSWTC--------------------LVDGFSKCGKVEIAREIFYRMP-NRNLVSWN 254
            +DL ++ C                    L+D ++KCG    ARE+F  +   R    WN
Sbjct: 250 LKDL-NFGCSLHMLVGDKRMLMSDKLVVALIDMYAKCGDTGRAREVFDALGRGRGPQPWN 308

Query: 255 AMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLP 314
           AMI+GY K G VD A  LFD ME  D+IT+NS+I GY   GR  EAL L   M    +  
Sbjct: 309 AMIDGYCKVGHVDIARSLFDQMEDHDVITFNSLITGYIHGGRLREALLLFTKMRRHGLGA 368

Query: 315 NDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVF 374
           ++ T+V  L+A A L  L +GR +H+ I +     D  LGT L+ MY KCG +E A+  F
Sbjct: 369 DNFTMVGLLTASASLGALPQGRALHACIEQRLVERDVYLGTALLDMYMKCGRVEEAMVAF 428

Query: 375 RAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVN 434
           + +S + V  W+AMI GL  +GM   AL+ F  M   G    ++T+I VL ACSH+ L++
Sbjct: 429 KQMSVRDVHTWSAMIGGLAFNGMGKAALEHFFWMKCDGFHANSVTYIAVLTACSHSCLLD 488

Query: 435 DGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG 494
           +GR YF+ M   + I P IEHYGC++D+L R+G L+EA   +++MPM+PN VIW S+LS 
Sbjct: 489 EGRLYFDEMRLLHNIRPQIEHYGCMIDLLGRSGLLDEAMDLVQTMPMQPNAVIWASILSA 548

Query: 495 ARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDP 554
            R H N D+ + AA++L+K+ P     YV + NIY  + QW+  S++R +M+KRG +K  
Sbjct: 549 CRVHKNVDLAQNAAHHLLKLEPAEDAVYVQMYNIYIDSRQWEDASKIRRLMEKRGVKKTA 608

Query: 555 GSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEK 614
           G SSI   G +H+F+VGD+SHPQ  EI   + E+  +LK+AG+ P T+Q+ + + D++EK
Sbjct: 609 GYSSIAVAGQVHKFIVGDRSHPQIAEIVVMMEEIGRRLKSAGYSPITSQITVDV-DEEEK 667

Query: 615 EAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSR 674
           E  L  HSE+LAIAFGL+++    P+ I+KNLRVC DCHS  KL+S ++NREIIVRD SR
Sbjct: 668 EQALLAHSEKLAIAFGLVSLAPNLPVHIIKNLRVCEDCHSAIKLISRLWNREIIVRDRSR 727

Query: 675 FHHFKNGSCSCKDFW 689
           FHHF+ G CSC DFW
Sbjct: 728 FHHFRGGVCSCNDFW 742


>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 685

 Score =  464 bits (1193), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 254/677 (37%), Positives = 381/677 (56%), Gaps = 22/677 (3%)

Query: 26  NILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHP 85
            ++  +ST    +Q+H   +  +L + + + + LL   +       HY+  +F    Q P
Sbjct: 18  TLISVASTFNHLKQVHVSLIHHHLHHDTFLVNLLLKRTL--FFRQTHYSFLLFSHT-QFP 74

Query: 86  SLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIH 145
           ++ LYN LI  +V N   HE L LF  +    L    FT P V+K   R    K G  +H
Sbjct: 75  NIFLYNTLINGFVNNHLFHETLDLFLSIRKHGLNLHGFTFPLVLKACTRASNRKLGIDLH 134

Query: 146 GLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVE 205
            LV K GF  D   ++SL+S+Y+  G ++   +VF+ + ++ +V+W  L  GY   G+  
Sbjct: 135 SLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTALFSGYTTAGKHR 194

Query: 206 VAMKLFDEM------PDRDLFSWTCLVDGFSKC---GKVEIAREIFYRMP----NRNLVS 252
            A+ LF +M      PD        +V   S C   G ++    I   M      +N   
Sbjct: 195 EAIDLFKKMVEMGVRPDSYF-----IVQVLSACVHVGDLDSGEWIVKHMEEMEMQKNSFV 249

Query: 253 WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDV 312
              ++N Y K G ++ A  +FD M  +D++TW++MI GY  N    E +E    ML  ++
Sbjct: 250 RTTLVNLYAKCGKMEKARSVFDSMGEKDIVTWSTMIQGYASNSFPKEGIEFFLQMLQENL 309

Query: 313 LPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALT 372
            P+  ++V  LS+ A L  L+ G W  S I ++ F+ +  +   LI MY+KCG++     
Sbjct: 310 KPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFE 369

Query: 373 VFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGL 432
           VF+ + +K +    A I GL  +G    +  +F +  ++G+ P   TF+G+L  C HAGL
Sbjct: 370 VFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGL 429

Query: 433 VNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLL 492
           + DG R+FN +   Y ++ T+EHYGC+VD+  R G L++A   I  MPMRPN ++W +LL
Sbjct: 430 IQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALL 489

Query: 493 SGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRK 552
           SG R   +  + E     LI + P   G YV LSNIY+ +G+WD+ +EVR+MM ++G +K
Sbjct: 490 SGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVSGRWDEAAEVRDMMNRKGMKK 549

Query: 553 DPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQK 612
            PG S IE  G +HEF+  DKSHP +D+I++KL ++ N+++  G VP T  V   +ED+ 
Sbjct: 550 IPGYSWIELEGTVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEDE- 608

Query: 613 EKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDN 672
           EKE  L +HSE+LA+AFGLI+      IR+VKNLRVC DCH V KL+S I  REI+VRDN
Sbjct: 609 EKERVLGHHSEKLAVAFGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDN 668

Query: 673 SRFHHFKNGSCSCKDFW 689
           +RFH F NGSCSC D+W
Sbjct: 669 NRFHCFTNGSCSCNDYW 685


>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 598

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 245/609 (40%), Positives = 353/609 (57%), Gaps = 67/609 (11%)

Query: 86  SLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQ-- 143
           S  L++ LI+ +  + R   AL L+  L+   L P   TLP ++K  A   A+   ++  
Sbjct: 52  SAELHDALIRAHASSGRPQAALPLYAHLIRAGLFPTPHTLPSLLKSLALSPAVPGARRLA 111

Query: 144 --IHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKK 201
             +H    +LG      V ++L+ ++A      LGR                L D ++  
Sbjct: 112 LAVHAHAVRLGLAGFLLVNNALIRVHAGL----LGR----------------LADAHL-- 149

Query: 202 GEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYM 261
                   L       D  ++  L+   ++ G+V  AR +F  MP RN VSW+AM+NGY+
Sbjct: 150 --------LLRTSAAVDASTFNTLITAHARAGRVADARSLFDEMPERNAVSWSAMVNGYV 201

Query: 262 KAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVS 321
           +AGD                             GR  EAL +   M    V P+D  LV 
Sbjct: 202 QAGD-----------------------------GR--EALGVFSQMQAQGVRPDDTVLVG 230

Query: 322 ALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKK 381
            L+A A L  L +G+W+H Y+  N   +   LGT L+ MY+KCG ++  + VF  +  K 
Sbjct: 231 VLAACAQLGALEQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQLGMEVFEGMKDKN 290

Query: 382 VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFN 441
           V  WT MI GL MHG  + +L LF++M   G+KP  I FIG L AC+H GLV+ GR  FN
Sbjct: 291 VLAWTTMIKGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGALCACTHTGLVDKGRELFN 350

Query: 442 MMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNK 501
            M+N+YGI+P IEHYGC+VD+L R G L EA+  +E MPM+P+ +IW +L++G R H N 
Sbjct: 351 SMVNNYGIKPKIEHYGCMVDLLARNGLLSEARDMVEKMPMKPDALIWGALMAGCRFHKNV 410

Query: 502 DIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEH 561
           ++ EY   + I++ PD  G YV+L NIY+A+G+     E+R +M+++G  K PG S++E 
Sbjct: 411 ELAEYVIKHWIELEPDKSGAYVLLGNIYSASGRHASAREIRNLMREKGVEKTPGCSNVEI 470

Query: 562 RGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLK-AAGHVPDTTQVLLCIEDQKEKEAELEN 620
           +GV+H+F+VGD SHP+  +I +K  E+ ++++   G+VPD  +VLL IE++ E E+ L  
Sbjct: 471 KGVIHQFIVGDLSHPRIKDILTKWYEIDSRIRLEEGYVPDKKEVLLDIEEE-EMESALSR 529

Query: 621 HSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKN 680
           HSE+LAIAF LI+ +   PIRIVKNLRVC DCH VTKL+S +Y REIIVRD +RFH FK+
Sbjct: 530 HSEKLAIAFALISTEDYMPIRIVKNLRVCQDCHHVTKLISKVYGREIIVRDRTRFHLFKD 589

Query: 681 GSCSCKDFW 689
           G+CSCKD+W
Sbjct: 590 GTCSCKDYW 598



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 126/245 (51%), Gaps = 15/245 (6%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           ARS+FD + +  + V ++ ++  YV      EAL +F  +  + + PD+  L  V+   A
Sbjct: 178 ARSLFDEMPER-NAVSWSAMVNGYVQAGDGREALGVFSQMQAQGVRPDDTVLVGVLAACA 236

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
           +LGA+++GK +HG +         F+ ++LV MYAK GE+ LG  VF+ M DK++++W  
Sbjct: 237 QLGALEQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQLGMEVFEGMKDKNVLAWTT 296

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREIFYRMPNR- 248
           +I G    G    ++ LF +M       D  ++   +   +  G V+  RE+F  M N  
Sbjct: 297 MIKGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGALCACTHTGLVDKGRELFNSMVNNY 356

Query: 249 ----NLVSWNAMINGYMKAGDVDSACELFDDMEIR-DLITWNSMIAGYELNGRFMEALEL 303
                +  +  M++   + G +  A ++ + M ++ D + W +++AG     RF + +EL
Sbjct: 357 GIKPKIEHYGCMVDLLARNGLLSEARDMVEKMPMKPDALIWGALMAGC----RFHKNVEL 412

Query: 304 LETML 308
            E ++
Sbjct: 413 AEYVI 417


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 259/675 (38%), Positives = 392/675 (58%), Gaps = 19/675 (2%)

Query: 26  NILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHP 85
           ++LK      +  ++H L++K   ++   +++ L+ LY       +  AR +FD +    
Sbjct: 158 SVLKACRNVTDGNKIHCLALKFGFMWDVYVAASLIHLYC--RYGAVVNARILFDEMPTR- 214

Query: 86  SLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIH 145
            +  +N +I  Y  +  + EALTL     D     D+ T+  ++      G    G  IH
Sbjct: 215 DMGSWNAMISGYCQSGNAKEALTLS----DGLRAMDSVTVVSLLSACTEAGDFNRGVTIH 270

Query: 146 GLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVE 205
               K G   + FV + L+ +YA+FG +   ++VFD M  +DL+SWN +I  Y    +  
Sbjct: 271 SYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPL 330

Query: 206 VAMKLFDEMP----DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR-----NLVSWNAM 256
            A+ LF EM       D  +   L    S+ G++   R +      +     ++   NA+
Sbjct: 331 RAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRSVQGFTLRKGWFLEDITIGNAV 390

Query: 257 INGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLI--GDVLP 314
           +  Y K G VDSA  +F+ +  +D+I+WN++I+GY  NG   EA+E+   M    G++  
Sbjct: 391 VVMYAKLGLVDSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISA 450

Query: 315 NDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVF 374
           N  T VS L A +    L +G  +H  ++KNG  +D  +GT L  MY KCG ++ AL++F
Sbjct: 451 NQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVGTSLADMYGKCGRLDDALSLF 510

Query: 375 RAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVN 434
             I +     W  +I   G HG   +A+ LF +M   G+KP  ITF+ +L+ACSH+GLV+
Sbjct: 511 YQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVD 570

Query: 435 DGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG 494
           +G   F MM  DYGI P+++HYGC+VD+  R G LE A + I+SMP++P+  IW +LLS 
Sbjct: 571 EGEWCFEMMQTDYGITPSLKHYGCMVDLYGRAGQLEIALNFIKSMPLQPDASIWGALLSA 630

Query: 495 ARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDP 554
            R HGN D+G+ A+ +L +V P+ +G +V+LSN+YA+AG+W+ V E+R +   +G RK P
Sbjct: 631 CRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSITSGKGLRKTP 690

Query: 555 GSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEK 614
           G SS+E    +  F  G+++HP  +E++ +L+ +  KLK  G+VPD   VL  +ED  EK
Sbjct: 691 GWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALHEKLKMVGYVPDHRFVLQDVEDD-EK 749

Query: 615 EAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSR 674
           E  L +HSERLA+AF LI   +++ IRI KNLRVC DCHSVTK +S I  REIIVRD++R
Sbjct: 750 EHILMSHSERLAMAFALITTPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNR 809

Query: 675 FHHFKNGSCSCKDFW 689
           FHHFKNG CSC D+W
Sbjct: 810 FHHFKNGVCSCGDYW 824



 Score =  216 bits (550), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 163/552 (29%), Positives = 283/552 (51%), Gaps = 27/552 (4%)

Query: 26  NILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHP 85
            + ++ +  +  + LHA  V +N I +  IS++L++LY   ++ N+  AR  FD I  + 
Sbjct: 59  TLFRYCTNLQSAKCLHARLVVSNAIQNVCISAKLVNLYC--YLGNVALARYTFDHI-HNR 115

Query: 86  SLVLYNLLIKCYVFNQRSHEALTLFC-DLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQI 144
            +  +NL+I  Y     S E +  F   +L   L PD  T P V+K       + +G +I
Sbjct: 116 DVYAWNLMISGYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRN---VTDGNKI 172

Query: 145 HGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEV 204
           H L  K GF +D +V +SL+ +Y ++G +   R +FD M  +D+ SWN +I GY + G  
Sbjct: 173 HCLALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNA 232

Query: 205 EVAMKLFDEMPDRDLFSWTCLVDGFSKCGK----VEI-AREIFYRMPNRNLVSWNAMING 259
           + A+ L D +   D  +   L+   ++ G     V I +  I + + +   VS N +I+ 
Sbjct: 233 KEALTLSDGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVS-NKLIDL 291

Query: 260 YMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATL 319
           Y + G +    ++FD M +RDLI+WNS+I  YELN + + A+ L + M +  + P+  TL
Sbjct: 292 YAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTL 351

Query: 320 VSALSAVAGLAVLNKGRWMHSYIVKNG-FVVDGVLGTLLIQMYSKCGSIESALTVFRAIS 378
           +S  S ++ L  +   R +  + ++ G F+ D  +G  ++ MY+K G ++SA  VF  + 
Sbjct: 352 ISLASILSQLGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLP 411

Query: 379 KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI--TFIGVLNACSHAGLVNDG 436
            K V  W  +I G   +G A++A++++N M   G + +A   T++ VL ACS AG +  G
Sbjct: 412 NKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQG 471

Query: 437 RRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLS--G 494
            +    ++ + G+   +     L D+  + G L++A S    +P R N V W +L++  G
Sbjct: 472 MKLHGRLLKN-GLYLDVFVGTSLADMYGKCGRLDDALSLFYQIP-RVNSVPWNTLIACHG 529

Query: 495 ARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDP 554
              HG K +  +       V PD I  +V L +  + +G  D+     EMM+      D 
Sbjct: 530 FHGHGEKAVMLFKEMLDEGVKPDHI-TFVTLLSACSHSGLVDEGEWCFEMMQ-----TDY 583

Query: 555 G-SSSIEHRGVL 565
           G + S++H G +
Sbjct: 584 GITPSLKHYGCM 595


>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 238/600 (39%), Positives = 361/600 (60%), Gaps = 49/600 (8%)

Query: 138 IKEGKQIHGLVFKLGFGFDKFVLSSLV--SMYAKFGEIDLGRRVFDAMDDKDLVSWNCLI 195
           +K+  +I   +   GF  D F  S L+  S  + F  +D   ++FD +++ +   WN ++
Sbjct: 42  LKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFIGLDYSLQIFDRIENSNGFMWNTMM 101

Query: 196 DGYVKKGEVEVAMKLFDEMP---------------------------------------D 216
             Y++    E A+ L+  M                                        D
Sbjct: 102 RAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDHVLKVGFD 161

Query: 217 RDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGD---VDSACELF 273
            D++    L++ ++ CG +  AR++F   P  + VSWN+++ GY+K GD   V  A +LF
Sbjct: 162 SDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDMGQVMEAWKLF 221

Query: 274 DDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLN 333
           ++M+ +D+++W+++I+GYE NG + EAL +   M    +  ++  +VS LSA A L+++ 
Sbjct: 222 NEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVK 281

Query: 334 KGRWMHSYIVKNGFVVDGVLGTLLIQMYS----KCGSIESALTVFRAISKKKVGHWTAMI 389
            G+ +H  +++ G      L   LI MYS    KCG +E+AL VF  + +K V  W A+I
Sbjct: 282 TGKMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEKGVSSWNALI 341

Query: 390 VGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGI 449
           +GL ++G+  ++LD+F++M   G+ P  ITF+GVL AC H GLV++GR +F  MI  +GI
Sbjct: 342 IGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGI 401

Query: 450 EPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAAN 509
           EP ++HYGC+VD+L R G L EA+  IESMPM P+   W +LL   + HG+ ++GE    
Sbjct: 402 EPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGR 461

Query: 510 NLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFV 569
            LI++ PD  G +V+LSNI+A+ G W+ V EVR MMK++G  K PG S IE  GV+HEF+
Sbjct: 462 KLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEANGVVHEFL 521

Query: 570 VGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAF 629
            GDK+HP  +++   L+EM  +LK  G+ PDT +V L I D++EKE  L  HSE+LAIAF
Sbjct: 522 AGDKTHPWINKVEGMLNEMAKRLKMEGYAPDTNEVSLDI-DEEEKETTLFRHSEKLAIAF 580

Query: 630 GLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           GL+ +   +PIRI+KNLR+CNDCH+  KL+S  Y REI+VRD  RFH+FK G+CSC D+W
Sbjct: 581 GLLTISPPTPIRIMKNLRICNDCHTAAKLISKAYAREIVVRDRHRFHYFKEGACSCMDYW 640


>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 599

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 233/556 (41%), Positives = 343/556 (61%), Gaps = 5/556 (0%)

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
           R G IK  +Q+   + +     D F  + +++ Y    +++  R  FD M  KD  SWN 
Sbjct: 49  RRGKIKVARQLFDRIPEP----DIFSYNIMLACYLHNADVESARLFFDQMPVKDTASWNT 104

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSW 253
           +I G+ + G ++ A +LF  MP R+  SW  ++ G+ + G +++A+++F   P R++V+W
Sbjct: 105 MISGFSQNGMMDQARELFLVMPVRNSVSWNAMISGYVESGDLDLAKQLFEVAPVRSVVAW 164

Query: 254 NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL 313
            AMI G+MK G ++ A + F++M +++L+TWN+MIAGY  N +    L+L + M+     
Sbjct: 165 TAMITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFR 224

Query: 314 PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTV 373
           PN ++L S L   + L+ L  G+ +H  I K+    +   GT L+ MY KCG +E A  +
Sbjct: 225 PNPSSLSSVLLGCSNLSALKLGKQVHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKL 284

Query: 374 FRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLV 433
           F  + +K V  W AMI G   HG   +AL LF+KM   GMKP  ITF+ VL+AC+HAG V
Sbjct: 285 FLVMPQKDVVTWNAMISGYAQHGAGEKALYLFDKMRDEGMKPDWITFVAVLSACNHAGFV 344

Query: 434 NDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLS 493
           + G  YFN M+ DYG+E   +HY C+VD+L R G L EA   I+ MP +P+  I+ +LL 
Sbjct: 345 DLGIEYFNSMVRDYGVEAKPDHYTCVVDLLGRGGKLVEAVDLIKKMPFKPHSAIFGTLLG 404

Query: 494 GARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKD 553
             R H N ++ E+AA NL+ + P++   YV L+N+YAA  +WD V+ VR  MK     K 
Sbjct: 405 ACRIHKNLELAEFAAKNLLNLDPESAAGYVQLANVYAAMNRWDHVAMVRRSMKDNKVIKT 464

Query: 554 PGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKE 613
           PG S IE + V+HEF  GD+ HP+   IH KL+E+  K++ AG+VPD    L  + ++++
Sbjct: 465 PGYSWIEVKSVVHEFRSGDRIHPELAFIHEKLNELERKMRLAGYVPDLEYALHDVGEEQK 524

Query: 614 KEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNS 673
           K+  L  HSE+LAIA+GLI +   +PIR+ KNLRVC DCHS TK +S I  R IIVRD +
Sbjct: 525 KQILLR-HSEKLAIAYGLIRMPLGTPIRVFKNLRVCGDCHSATKYISAIEGRVIIVRDTT 583

Query: 674 RFHHFKNGSCSCKDFW 689
           RFHHF+ G CSC D+W
Sbjct: 584 RFHHFRQGECSCGDYW 599



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 135/281 (48%), Gaps = 18/281 (6%)

Query: 86  SLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIH 145
           +LV +N +I  Y+ N ++   L LF  +++    P+  +L  V+ G + L A+K GKQ+H
Sbjct: 191 NLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSALKLGKQVH 250

Query: 146 GLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVE 205
            L+ K    ++    +SL+SMY K G+++   ++F  M  KD+V+WN +I GY + G  E
Sbjct: 251 QLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQKDVVTWNAMISGYAQHGAGE 310

Query: 206 VAMKLFDEMPDRDLFS-WTCLVDGFSKC---GKVEIAREIFYRMPNRNLVS-----WNAM 256
            A+ LFD+M D  +   W   V   S C   G V++  E F  M     V      +  +
Sbjct: 311 KALYLFDKMRDEGMKPDWITFVAVLSACNHAGFVDLGIEYFNSMVRDYGVEAKPDHYTCV 370

Query: 257 INGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNG-RFMEALELLETMLIGDVLPN 315
           ++   + G +  A +L   M  +     +S I G  L   R  + LEL E     ++L  
Sbjct: 371 VDLLGRGGKLVEAVDLIKKMPFKP----HSAIFGTLLGACRIHKNLELAE-FAAKNLLNL 425

Query: 316 DATLVSALSAVAGL-AVLNKGRWMHSYIVKNGFVVDGVLGT 355
           D    +    +A + A +N  RW H  +V+     + V+ T
Sbjct: 426 DPESAAGYVQLANVYAAMN--RWDHVAMVRRSMKDNKVIKT 464



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 143/335 (42%), Gaps = 59/335 (17%)

Query: 249 NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYE-LNGRFMEALELLETM 307
           N++S N +I  ++++GD++SA  +F+ M ++  +TWNSM+AGY    G+   A +L + +
Sbjct: 4   NVISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLFDRI 63

Query: 308 -------------------------LIGDVLP--NDATLVSALSAVAGLAVLNKGRWMHS 340
                                    L  D +P  + A+  + +S  +   ++++ R +  
Sbjct: 64  PEPDIFSYNIMLACYLHNADVESARLFFDQMPVKDTASWNTMISGFSQNGMMDQARELFL 123

Query: 341 YI-VKN---------GFVVDG-----------------VLGTLLIQMYSKCGSIESALTV 373
            + V+N         G+V  G                 V  T +I  + K G IE A   
Sbjct: 124 VMPVRNSVSWNAMISGYVESGDLDLAKQLFEVAPVRSVVAWTAMITGFMKFGKIELAEKY 183

Query: 374 FRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLV 433
           F  +  K +  W AMI G   +  A   L LF +M   G +P   +   VL  CS+   +
Sbjct: 184 FEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSAL 243

Query: 434 NDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLS 493
             G++  + +I    +   I     L+ + C+ G LE+A      MP + + V W +++S
Sbjct: 244 KLGKQ-VHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQK-DVVTWNAMIS 301

Query: 494 GARNHGNKDIGEYAANNLIK--VAPDTIGCYVVLS 526
           G   HG  +   Y  + +    + PD I    VLS
Sbjct: 302 GYAQHGAGEKALYLFDKMRDEGMKPDWITFVAVLS 336


>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 742

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 276/734 (37%), Positives = 398/734 (54%), Gaps = 83/734 (11%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYV------DPHINNLHYARSIFDRILQHPSLV 88
           ++  +LHA+ V +  + H   +S LL+  V      DP   +L YA  +FDR +   + +
Sbjct: 13  RQAAELHAVLVASGRLLHPPSASHLLNSLVNCFTPTDPL--HLRYALCLFDR-MPCSTFL 69

Query: 89  LYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGA-IKEGKQIHGL 147
               L  C+  +      L L+  +    +  D FT   + K  AR  A +   + +H  
Sbjct: 70  FDTALRACFRASSGPESPLILYRRMRRTGVCTDAFTFHFLFKCCARGRAHVLLCQMLHAA 129

Query: 148 VFKLGF-GFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD------------------- 187
            F+         V + ++ MY + G     RR FD +  KD                   
Sbjct: 130 CFRTMLPSAVPLVSNPIIHMYVELGLAGDARRAFDDIPVKDAVAWTTVISGLAKLGLLDD 189

Query: 188 ------------LVSWNCLIDGYVKKGEVEVAMKLFDEM------PD------------- 216
                       ++SW  LI GY + G    A+  F+ M      PD             
Sbjct: 190 AWCLLRHSPARNVISWTGLISGYSRAGRAAEAVDCFNSMLSDGIEPDEVTVIGLLSACAQ 249

Query: 217 -RDLFSW-------------------TCLVDGFSKCGKVEIAREIFYRM-PNRNLVSWNA 255
            +DL                        L+D ++KCG +  A E+F  +   R   SWNA
Sbjct: 250 LKDLVFGRSLHKLVGEKGMLMSGKLVVALIDMYAKCGDIGRAWEVFDALGRGRRPQSWNA 309

Query: 256 MINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPN 315
           MI+GY K G VD A  LFD ME RDL+T+NS+I GY   GR  EAL L   M   D+  +
Sbjct: 310 MIDGYCKLGHVDVARYLFDQMEDRDLVTFNSLITGYIHGGRLREALLLFMQMRRHDLRAD 369

Query: 316 DATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFR 375
           + T+VS L+A A L  L +GR +H+ I +    VD  LGT L+ MY KCG +E A  VF+
Sbjct: 370 NFTMVSLLTACASLGALPQGRALHACIEQRLVEVDIYLGTALLDMYLKCGRVEEASLVFQ 429

Query: 376 AISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVND 435
           A+S + V  W+AMI GL  +GM   AL+ F  M   G +P ++T+I +L ACSH+ L+++
Sbjct: 430 AMSVRDVHTWSAMIAGLAFNGMGKAALEYFFWMKVDGFQPNSVTYIAILTACSHSCLLDE 489

Query: 436 GRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGA 495
           GR YF  M   + I P IEHYGC++D+L R+G L+EA   + +MPM+PN VIW S+LS  
Sbjct: 490 GRLYFEEMRLLHNIRPLIEHYGCMIDLLGRSGLLDEAMDLVRTMPMQPNAVIWASILSAC 549

Query: 496 RNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPG 555
           R H + ++   AA +L+K+ PD    YV L NIY  + QW+  S++R +M++RG +K  G
Sbjct: 550 RVHKDANLARNAAEHLLKLEPDEDAVYVQLYNIYIDSRQWEDASQIRRLMEERGVKKAAG 609

Query: 556 SSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKE 615
            SSI   G +H+F+V D++HPQ  EI + + E+  +LK+ G+ P T+Q+ + + D++EKE
Sbjct: 610 YSSITVAGQVHKFIVCDRTHPQIMEITAMMEEITRRLKSVGYSPITSQITVDV-DEEEKE 668

Query: 616 AELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRF 675
             L  HSE++AIAFGLI++    P+ I+KNLRVC DCHS  KL+S I+NREIIVRD SRF
Sbjct: 669 HALLAHSEKIAIAFGLISLAPNLPLHIIKNLRVCEDCHSAIKLISRIWNREIIVRDRSRF 728

Query: 676 HHFKNGSCSCKDFW 689
           HHF++G+CSC DFW
Sbjct: 729 HHFRDGTCSCNDFW 742


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 253/671 (37%), Positives = 388/671 (57%), Gaps = 48/671 (7%)

Query: 29  KFSSTHKETQQLHALSVKTNLIYHSGISSRLLS-LYVDPHINNLHYARS-IFDRILQHPS 86
           K S    +TQ     SV+        + SRL+S L+   HIN +    + IF + L+   
Sbjct: 15  KTSYCQLQTQSFIPFSVRQE---QKILESRLVSVLHGCTHINQVKQVHAHIFRKGLEQCC 71

Query: 87  LVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLL-----PDNFTLPCVIKGAARLGAIKEG 141
            VL  LL        R+   L +  D   R +      P+ F    +I+G A  G   E 
Sbjct: 72  FVLAKLL--------RTLTKLDVPMDPYPRLVFQQVEYPNPFLWTALIRGYALQGPFMES 123

Query: 142 KQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKK 201
             ++  + + G G   F  ++L+   +   +++LGR+V          +   LI G+   
Sbjct: 124 VLLYNSMRRQGIGPVSFTFTALLKACSAALDVNLGRQVH---------TQTILIGGF--- 171

Query: 202 GEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYM 261
                           DL+    L+D + KCG +     +F  M +R+++SW ++I  Y 
Sbjct: 172 --------------GSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYA 217

Query: 262 KAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVS 321
           K G++++A ELFD + ++D++ W +M+ GY  N R  EALE+ E M    V  ++ TLV 
Sbjct: 218 KVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVG 277

Query: 322 ALSAVAGLAVLNKGRWMHSYIVKNGF--VVDGVLGTLLIQMYSKCGSIESALTVFRAISK 379
            +SA A L       W+     ++GF    + V+G+ LI MY+KCGS+E A  VF  + +
Sbjct: 278 VISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEE 337

Query: 380 KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRY 439
           + V  +++MIVG  MHG+A  A++LF++M +  +KP  +TFIGVL ACSHAG+V  G++ 
Sbjct: 338 RNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQL 397

Query: 440 FNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
           F MM   +G+ P+ +HY C+VD+L R G LEEA + ++ MPM P+  +W +LL   R HG
Sbjct: 398 FAMMEECHGVAPSEDHYACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGACRIHG 457

Query: 500 NKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSI 559
           N D+ + AA++L ++ P+ IG Y++LSNIYA+AG+WD VS+VR++M+ +G +K+PG S +
Sbjct: 458 NPDMAQIAASHLFELEPNGIGNYILLSNIYASAGRWDDVSKVRKLMRAKGLKKNPGCSWV 517

Query: 560 E-HRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAEL 618
           E  +G++HEF  GD SHP++ EI   L ++ ++LK  G+ P+ + V   I D+ EK+  L
Sbjct: 518 EGKKGIIHEFFAGDMSHPKSREIKQALEDLLDRLKYLGYQPNLSSVAYDISDE-EKKRLL 576

Query: 619 ENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHF 678
            +HSE+LA+AFGL+   +   IRIVKNLR+C DCHSV    S I  REI+VRDN RFHHF
Sbjct: 577 MSHSEKLALAFGLLTTNAGCTIRIVKNLRICEDCHSVMCGASQITGREIVVRDNMRFHHF 636

Query: 679 KNGSCSCKDFW 689
           ++G CSC +FW
Sbjct: 637 RDGRCSCGNFW 647


>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
          Length = 659

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 257/650 (39%), Positives = 375/650 (57%), Gaps = 21/650 (3%)

Query: 57  SRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDR 116
           SRLL         NL    ++F+R +    +  +N +I     +  S EAL  F  +   
Sbjct: 14  SRLLHTERHTERQNL---TTLFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKL 70

Query: 117 FLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLG 176
            L P   + PC IK  + L  I  GKQ H   F  G+  D FV S+L+ MY+  G+++  
Sbjct: 71  SLYPTRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDA 130

Query: 177 RRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLF-----DEMPDRD--LFSWTCLVDGF 229
           R+VFD +  +D+VSW  +I GY   G    A+ LF     DE  D D        LV   
Sbjct: 131 RKVFDEIPKRDIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVI 190

Query: 230 SKCGKV-------EIAREIFYRMPNRNLVSWNAMINGYMKAGD--VDSACELFDDMEIRD 280
           S C +V        I   +  R  +R +   N +++ Y K G+  V  A ++FD +  +D
Sbjct: 191 SACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKD 250

Query: 281 LITWNSMIAGYELNGRFMEALELLETMLIGDVLP-NDATLVSALSAVAGLAVLNKGRWMH 339
            +++NS+++ Y  +G   EA E+   ++   V+  N  TL + L AV+    L  G+ +H
Sbjct: 251 RVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIH 310

Query: 340 SYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMAT 399
             +++ G   D ++GT +I MY KCG +E+A   F  +  K V  WTAMI G GMHG A 
Sbjct: 311 DQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAA 370

Query: 400 QALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCL 459
           +AL+LF  M   G++P  ITF+ VL ACSHAGL  +G R+FN M   +G+EP +EHYGC+
Sbjct: 371 KALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCM 430

Query: 460 VDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTI 519
           VD+L R G+L++A   I+ M M+P+ +IW SLL+  R H N ++ E +   L ++     
Sbjct: 431 VDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNC 490

Query: 520 GCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTD 579
           G Y++LS+IYA AG+W  V  VR +MK RG  K PG S +E  G +H F++GD+ HPQ +
Sbjct: 491 GYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQRE 550

Query: 580 EIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSP 639
           +I+  L+E+  KL  AG+V +T+ V   + D++EKE  L  HSE+LAIAFG++N    S 
Sbjct: 551 KIYEFLAELNRKLLEAGYVSNTSSVCHDV-DEEEKEMTLRVHSEKLAIAFGIMNTVPGST 609

Query: 640 IRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           + +VKNLRVC+DCH+V KL+S I +RE +VRD  RFHHFK+G CSC D+W
Sbjct: 610 VNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 126/265 (47%), Gaps = 12/265 (4%)

Query: 37  TQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKC 96
           T+ +H+  +K        + + LL  Y       +  AR IFD+I+     V YN ++  
Sbjct: 202 TESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDR-VSYNSIMSV 260

Query: 97  YVFNQRSHEALTLFCDLLDRFLLPDN-FTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF 155
           Y  +  S+EA  +F  L+   ++  N  TL  V+   +  GA++ GK IH  V ++G   
Sbjct: 261 YAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLED 320

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP 215
           D  V +S++ MY K G ++  R+ FD M +K++ SW  +I GY   G    A++LF  M 
Sbjct: 321 DVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMI 380

Query: 216 DRDLF-SWTCLVDGFSKCGKVEIARE---IFYRMPNR-----NLVSWNAMINGYMKAGDV 266
           D  +  ++   V   + C    +  E    F  M  R      L  +  M++   +AG +
Sbjct: 381 DSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFL 440

Query: 267 DSACELFDDMEIR-DLITWNSMIAG 290
             A +L   M+++ D I W+S++A 
Sbjct: 441 QKAYDLIQRMKMKPDSIIWSSLLAA 465


>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Glycine max]
          Length = 673

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 243/622 (39%), Positives = 364/622 (58%), Gaps = 40/622 (6%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           AR++FD ++   +++ YN++I+ Y+ N    +AL +F D++     PD++T PCV+K  +
Sbjct: 86  ARNVFD-VIPERNVIFYNVMIRSYMNNHLYDDALLVFRDMVSGGFSPDHYTYPCVLKACS 144

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
               ++ G Q+HG VFK+G   + FV + L+++Y K G +   R V D M  KD+VSWN 
Sbjct: 145 CSDNLRIGLQLHGAVFKVGLDLNLFVGNGLIALYGKCGCLPEARCVLDEMQSKDVVSWNS 204

Query: 194 LIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPN 247
           ++ GY +  + + A+ +  EM      PD    +        +    V    E+F  +  
Sbjct: 205 MVAGYAQNMQFDDALDICREMDGVRQKPDACTMASLLPAVTNTSSENVLYVEEMFMNLEK 264

Query: 248 RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETM 307
           ++LVSWN MI+ YMK                      NSM           ++++L   M
Sbjct: 265 KSLVSWNVMISVYMK----------------------NSMPG---------KSVDLYLQM 293

Query: 308 LIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSI 367
              +V P+  T  S L A   L+ L  GR +H Y+ +     + +L   LI MY++CG +
Sbjct: 294 GKCEVEPDAITCASVLRACGDLSALLLGRRIHEYVERKKLCPNMLLENSLIDMYARCGCL 353

Query: 368 ESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNAC 427
           E A  VF  +  + V  WT++I   GM G    A+ LF +M   G  P +I F+ +L+AC
Sbjct: 354 EDAKRVFDRMKFRDVASWTSLISAYGMTGQGYNAVALFTEMQNSGQSPDSIAFVAILSAC 413

Query: 428 SHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVI 487
           SH+GL+N+G+ YF  M +DY I P IEH+ CLVD+L R+G ++EA + I+ MPM+PN  +
Sbjct: 414 SHSGLLNEGKFYFKQMTDDYKITPIIEHFACLVDLLGRSGRVDEAYNIIKQMPMKPNERV 473

Query: 488 WMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547
           W +LLS  R + N DIG  AA+ L+++AP+  G YV+LSNIYA AG+W +V+ +R +MK+
Sbjct: 474 WGALLSSCRVYSNMDIGILAADKLLQLAPEESGYYVLLSNIYAKAGRWTEVTAIRSLMKR 533

Query: 548 RGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLC 607
           R  RK PG S++E    +H F+ GD  HPQ+ EI+ +LS +  K+K  G+VP T   L  
Sbjct: 534 RRIRKMPGISNVELNNQVHTFLAGDTYHPQSKEIYEELSVLVGKMKELGYVPKTDSALHD 593

Query: 608 IEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREI 667
           +E++ +KE  L  HSE+LAI F ++N +  SPIRI KNLRVC DCH   KL+S I  REI
Sbjct: 594 VEEE-DKECHLAVHSEKLAIVFAILNTQ-ESPIRITKNLRVCGDCHIAAKLISKIVQREI 651

Query: 668 IVRDNSRFHHFKNGSCSCKDFW 689
           ++RD +RFHHFK+G CSC D+W
Sbjct: 652 VIRDTNRFHHFKDGICSCGDYW 673



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 113/263 (42%), Gaps = 52/263 (19%)

Query: 57  SRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDR 116
           + LL    +    N+ Y   +F   L+  SLV +N++I  Y+ N    +++ L+  +   
Sbjct: 238 ASLLPAVTNTSSENVLYVEEMFMN-LEKKSLVSWNVMISVYMKNSMPGKSVDLYLQMGKC 296

Query: 117 FLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLG 176
            + PD  T   V++    L A+  G++IH  V +     +  + +SL+ MYA+ G ++  
Sbjct: 297 EVEPDAITCASVLRACGDLSALLLGRRIHEYVERKKLCPNMLLENSLIDMYARCGCLEDA 356

Query: 177 RRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDRDLF---------- 220
           +RVFD M  +D+ SW  LI  Y   G+   A+ LF EM      PD   F          
Sbjct: 357 KRVFDRMKFRDVASWTSLISAYGMTGQGYNAVALFTEMQNSGQSPDSIAFVAILSACSHS 416

Query: 221 ------------------------SWTCLVDGFSKCGKVEIAREIFYRMPNR-NLVSWNA 255
                                    + CLVD   + G+V+ A  I  +MP + N   W A
Sbjct: 417 GLLNEGKFYFKQMTDDYKITPIIEHFACLVDLLGRSGRVDEAYNIIKQMPMKPNERVWGA 476

Query: 256 MINGYMKAGDVDSACELFDDMEI 278
           ++          S+C ++ +M+I
Sbjct: 477 LL----------SSCRVYSNMDI 489



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 81/179 (45%)

Query: 256 MINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPN 315
           ++  Y   G+   A  +FD +  R++I +N MI  Y  N  + +AL +   M+ G   P+
Sbjct: 73  LMRAYAARGEPGLARNVFDVIPERNVIFYNVMIRSYMNNHLYDDALLVFRDMVSGGFSPD 132

Query: 316 DATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFR 375
             T    L A +    L  G  +H  + K G  ++  +G  LI +Y KCG +  A  V  
Sbjct: 133 HYTYPCVLKACSCSDNLRIGLQLHGAVFKVGLDLNLFVGNGLIALYGKCGCLPEARCVLD 192

Query: 376 AISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVN 434
            +  K V  W +M+ G   +     ALD+  +M  +  KP A T   +L A ++    N
Sbjct: 193 EMQSKDVVSWNSMVAGYAQNMQFDDALDICREMDGVRQKPDACTMASLLPAVTNTSSEN 251


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 254/677 (37%), Positives = 404/677 (59%), Gaps = 23/677 (3%)

Query: 27  ILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPS 86
           +LK   T  + +++H  + K    ++  +++ L+ +Y       +  ARS+FD  +    
Sbjct: 224 VLKACGTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGI--ARSLFDD-MPFRD 280

Query: 87  LVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPD---NF-TLPCVIKGAARLGAIKEGK 142
           +  +N +I   + N  + +AL    D+LD   L     NF T+  ++    +LG I    
Sbjct: 281 MGSWNAMISGLIQNGNAAQAL----DVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAM 336

Query: 143 QIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKG 202
            IH  V K G  FD FV ++L++MYAKFG ++  R+ F  M   D+VSWN +I  Y +  
Sbjct: 337 LIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQND 396

Query: 203 EVEVAMKLFDEMP----DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR-----NLVSW 253
           +   A   F +M       DL +   L    ++    + +R +   +  R     ++V  
Sbjct: 397 DPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIG 456

Query: 254 NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETML-IGDV 312
           NA+++ Y K G +DSA ++F+ + ++D+I+WN++I GY  NG   EA+E+ + M    ++
Sbjct: 457 NAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEI 516

Query: 313 LPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALT 372
           +PN  T VS L A A +  L +G  +H  ++K    +D  + T LI +Y KCG +  A++
Sbjct: 517 IPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMS 576

Query: 373 VFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGL 432
           +F  + ++    W A+I   G+HG A + L LF +M   G+KP  +TF+ +L+ACSH+G 
Sbjct: 577 LFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGF 636

Query: 433 VNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLL 492
           V +G+  F +M  +YGI+P+++HYGC+VD+L R GYLE A   I+ MP++P+  IW +LL
Sbjct: 637 VEEGKWCFRLM-QEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALL 695

Query: 493 SGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRK 552
              R HGN ++G++A++ L +V    +G YV+LSNIYA  G+W+ V +VR + ++RG +K
Sbjct: 696 GACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKK 755

Query: 553 DPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQK 612
            PG S+IE    +  F  G++SHP+  EI+ +L  +  K+K+ G++PD + VL  +E+  
Sbjct: 756 TPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEED- 814

Query: 613 EKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDN 672
           EKE  L +HSERLAIAFG+I+   +SPIRI KNLRVC DCH+ TK +S I  REI+VRD+
Sbjct: 815 EKEHILTSHSERLAIAFGIISTPPKSPIRIFKNLRVCGDCHNATKFISRITQREIVVRDS 874

Query: 673 SRFHHFKNGSCSCKDFW 689
           +RFHHFK+G CSC D+W
Sbjct: 875 NRFHHFKDGICSCGDYW 891



 Score =  216 bits (551), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 166/563 (29%), Positives = 279/563 (49%), Gaps = 38/563 (6%)

Query: 22  RLHWNILKFSSTHKETQQ-LHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDR 80
            + +N L  SST     + LHAL V    +    IS+RL++LY +  + ++  +R  FD+
Sbjct: 119 EIDFNFLFDSSTKTPFAKCLHALLVVAGKVQSIFISTRLVNLYAN--LGDVSLSRCTFDQ 176

Query: 81  ILQHPSLVLYNLLIKCYVFNQRSHEALTLFCD-LLDRFLLPDNFTLPCVIKGAARLGAIK 139
           I Q   +  +N +I  YV N   HEA+  F   LL   + PD +T P V+K     G + 
Sbjct: 177 IPQK-DVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC---GTLV 232

Query: 140 EGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYV 199
           +G++IH   FKLGF ++ FV +SL+ MY++FG   + R +FD M  +D+ SWN +I G +
Sbjct: 233 DGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLI 292

Query: 200 KKGEVEVAMKLFDEMPDRDL-FSWTCLVDGFSKC---GKVEIAREIFYRMPNR----NLV 251
           + G    A+ + DEM    +  ++  +V     C   G +  A  I   +       +L 
Sbjct: 293 QNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLF 352

Query: 252 SWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGD 311
             NA+IN Y K G+++ A + F  M I D+++WNS+IA YE N   + A      M +  
Sbjct: 353 VSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNG 412

Query: 312 VLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVV-DGVLGTLLIQMYSKCGSIESA 370
             P+  TLVS  S VA        R +H +I++ G+++ D V+G  ++ MY+K G ++SA
Sbjct: 413 FQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSA 472

Query: 371 LTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKM--CRMGMKPTAITFIGVLNACS 428
             VF  I  K V  W  +I G   +G+A++A++++  M  C+  + P   T++ +L A +
Sbjct: 473 HKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKE-IIPNQGTWVSILPAYA 531

Query: 429 HAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIW 488
           H G +  G +    +I    +   +    CL+D+  + G L +A S    +P   + V W
Sbjct: 532 HVGALQQGMKIHGRVIKT-NLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESS-VTW 589

Query: 489 MSLLS--GARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNI----YAAAGQWDKVSEVR 542
            +++S  G   H  K +  +       V PD +    +LS      +   G+W       
Sbjct: 590 NAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKW-----CF 644

Query: 543 EMMKKRGFRKDPGSSSIEHRGVL 565
            +M++ G +      S++H G +
Sbjct: 645 RLMQEYGIKP-----SLKHYGCM 662


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 267/757 (35%), Positives = 394/757 (52%), Gaps = 89/757 (11%)

Query: 12  IHALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNL 71
            HAL Q L S         +++  + +Q HAL ++ NL   + +++ LLS Y +    + 
Sbjct: 2   FHALSQCLSSS--------TASLSQARQAHALILRLNLFSDTQLTTSLLSFYANALSLST 53

Query: 72  HYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKG 131
                     L HP+L  ++ LI  +  +      LT F  L    L+PD F LP  IK 
Sbjct: 54  PQLSLTLSSHLPHPTLFSFSSLIHAFARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKS 113

Query: 132 AARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD---- 187
            A L A+  G+Q+H      GF  D  V SSL  MY K   I   R++FD M D+D    
Sbjct: 114 CASLRALDPGQQLHAFAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVW 173

Query: 188 -------------------------------LVSWNCLIDGYVKKGEVEVAMKLFDEM-- 214
                                          LVSWN ++ G+   G  + A+ +F  M  
Sbjct: 174 SAMIAGYSRLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLV 233

Query: 215 ----PD---------------------------------RDLFSWTCLVDGFSKCGKVEI 237
               PD                                  D F  + ++D + KCG V+ 
Sbjct: 234 QGFWPDGSTVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKE 293

Query: 238 AREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDD-----MEIRDLITWNSMIAGYE 292
              +F  +    + S NA + G  + G VD+A E+F+      ME+ +++TW S+IA   
Sbjct: 294 MSRVFDEVEEMEIGSLNAFLTGLSRNGMVDTALEVFNKFKDQKMEL-NVVTWTSIIASCS 352

Query: 293 LNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV 352
            NG+ +EALEL   M    V PN  T+ S + A   ++ L  G+ +H + ++ G   D  
Sbjct: 353 QNGKDLEALELFRDMQAYGVEPNAVTIPSLIPACGNISALMHGKEIHCFSLRRGIFDDVY 412

Query: 353 LGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG 412
           +G+ LI MY+KCG I+ A   F  +S   +  W A++ G  MHG A + +++F+ M + G
Sbjct: 413 VGSALIDMYAKCGRIQLARRCFDKMSALNLVSWNAVMKGYAMHGKAKETMEMFHMMLQSG 472

Query: 413 MKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEA 472
            KP  +TF  VL+AC+  GL  +G R +N M  ++GIEP +EHY CLV +L R G LEEA
Sbjct: 473 QKPDLVTFTCVLSACAQNGLTEEGWRCYNSMSEEHGIEPKMEHYACLVTLLSRVGKLEEA 532

Query: 473 KSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAA 532
            S I+ MP  P+  +W +LLS  R H N  +GE AA  L  + P   G Y++LSNIYA+ 
Sbjct: 533 YSIIKEMPFEPDACVWGALLSSCRVHNNLSLGEIAAEKLFFLEPTNPGNYILLSNIYASK 592

Query: 533 GQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKL 592
           G WD+ + +RE+MK +G RK+PG S IE    +H  + GD+SHPQ  +I  KL ++  ++
Sbjct: 593 GLWDEENRIREVMKSKGLRKNPGYSWIEVGHKVHMLLAGDQSHPQMKDILEKLDKLNMQM 652

Query: 593 KAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDC 652
           K +G++P T  VL  +E+Q +KE  L  HSE+LA+  GL+N     P++++KNLR+C+DC
Sbjct: 653 KKSGYLPKTNFVLQDVEEQ-DKEQILCGHSEKLAVVLGLLNTSPGQPLQVIKNLRICDDC 711

Query: 653 HSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           H+V K++S +  REI VRD +RFHHFK+G CSC DFW
Sbjct: 712 HAVIKVISRLEGREIYVRDTNRFHHFKDGVCSCGDFW 748


>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
 gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 244/574 (42%), Positives = 363/574 (63%), Gaps = 16/574 (2%)

Query: 126 PCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD 185
           P V+K     G + +GK+IH LV KLGF +D FV +SLV MY++FG +   R++FD M  
Sbjct: 1   PPVVKAC---GDLLDGKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPA 57

Query: 186 KDLVSWNCLIDGYVKKGEVEVAMKLFDEMP----DRDLFSWTCLVDGFSKCGKVEIAREI 241
           +D  SWN +I GY + G    A+ + DEM       D  +   ++   ++ G +   + I
Sbjct: 58  RDRGSWNAMISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLI 117

Query: 242 FYRMPNRNL-----VSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGR 296
              +    L     VS NA+IN Y K G +  A ++F  + I+D+++WN++I GY  NG 
Sbjct: 118 HLYVIKHGLEFELFVS-NALINMYAKFGSLGHAQKVFG-LLIKDVVSWNTLITGYAQNGL 175

Query: 297 FMEALELLETMLI-GDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGT 355
             EA+E+   M    +++PN  T VS L A + +  L +G  +H  ++KN    D  +GT
Sbjct: 176 ASEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVGT 235

Query: 356 LLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKP 415
            LI MY KCG ++ A+++F  + +K    W AMI   G+HG   +AL+LF +M    +KP
Sbjct: 236 CLIDMYGKCGKLDDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAERVKP 295

Query: 416 TAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKST 475
             ITF+ +L+ACSH+GLV+D +  FNMM  +YGI+P+++HYGC+VD+  R G LE A + 
Sbjct: 296 DHITFVSLLSACSHSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAFNF 355

Query: 476 IESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQW 535
           I+ MP++P+   W +LL+  R HGN ++G++A+  L +V  + +G YV+LSNIYA  G+W
Sbjct: 356 IKKMPIQPDASAWGALLNACRIHGNIELGKHASERLFEVDSENVGYYVLLSNIYANVGKW 415

Query: 536 DKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAA 595
           + V +VR + + RG RK+PG SSI     +  F  G+++HP+ +EI+ +L ++ +K+K  
Sbjct: 416 EGVDDVRSLARDRGLRKNPGWSSIILNNKVDVFYTGNQTHPKCEEIYRELRDLTSKIKTI 475

Query: 596 GHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSV 655
           G+VPD   VL  +E + EKE  L  HSERLAIA+G+I+   ++PIRI KNLRVC DCH+V
Sbjct: 476 GYVPDFCFVLQDVE-EDEKEHILMGHSERLAIAYGIISTSPKTPIRIFKNLRVCGDCHTV 534

Query: 656 TKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           TK +S I  REIIVRD+SRFHHFK G+CSC D+W
Sbjct: 535 TKFISIITEREIIVRDSSRFHHFKGGTCSCGDYW 568



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 105/407 (25%), Positives = 179/407 (43%), Gaps = 85/407 (20%)

Query: 36  ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIK 95
           + +++H L +K    +   +++ L+ +Y       +  AR +FD +        +N +I 
Sbjct: 12  DGKKIHCLVLKLGFEWDVFVAASLVHMY--SRFGLVGDARKLFDDMPARDRGS-WNAMIS 68

Query: 96  CYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF 155
            Y  N  + EAL +  ++    +  D  T+  V+   A++G I  GK IH  V K G  F
Sbjct: 69  GYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLIHLYVIKHGLEF 128

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKG------EVEVAMK 209
           + FV ++L++MYAKFG +   ++VF  +  KD+VSWN LI GY + G      EV + M+
Sbjct: 129 ELFVSNALINMYAKFGSLGHAQKVFGLL-IKDVVSWNTLITGYAQNGLASEAIEVYLLME 187

Query: 210 LFDE-MPDR---------------------------------DLFSWTCLVDGFSKCGKV 235
             +E +P++                                 D+F  TCL+D + KCGK+
Sbjct: 188 EHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVGTCLIDMYGKCGKL 247

Query: 236 EIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNG 295
           + A  +FY++P +N V WNAMI+ Y   GD + A ELF +M+                  
Sbjct: 248 DDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAE---------------- 291

Query: 296 RFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWM-----HSYIVKNGFVVD 350
                           V P+  T VS LSA +   +++  +W        Y +K      
Sbjct: 292 ---------------RVKPDHITFVSLLSACSHSGLVSDAQWCFNMMEEEYGIKPSLKHY 336

Query: 351 GVLGTLLIQMYSKCGSIESALTVFRAIS-KKKVGHWTAMIVGLGMHG 396
           G     ++ ++ + G +E A    + +  +     W A++    +HG
Sbjct: 337 GC----MVDLFGRAGELEMAFNFIKKMPIQPDASAWGALLNACRIHG 379


>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 623

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 237/591 (40%), Positives = 346/591 (58%), Gaps = 44/591 (7%)

Query: 142 KQIHGLVFKLGFGFDKFVLSSLVSMYAKFGE----IDLGRRVFDAMDDKDLVSWNCLIDG 197
           K IH  + +     D F  S L++           ID   R+F  + + +L  +N +I G
Sbjct: 34  KIIHAYMIRTHIICDVFAASRLIAFCVDPSSGTSLIDYASRIFSQIQNPNLFIFNAMIRG 93

Query: 198 YVKKGEVEVAMKLFDE------MPD---------------------------------RD 218
           +      + A   + +      +PD                                 +D
Sbjct: 94  HSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKLHCISMGSQAHGHIIKHGFEKD 153

Query: 219 LFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEI 278
           ++    LV  ++  G  E A  IF RM   ++VSW +MI G+ K GDV+SA +LFD M  
Sbjct: 154 VYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGFNKCGDVESARKLFDQMPE 213

Query: 279 RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWM 338
           ++L+TW++MI+GY  N  F +A+EL + +    V  N+  +VS +S+ A L  L  G   
Sbjct: 214 KNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMVSVISSCAHLGALELGERA 273

Query: 339 HSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMA 398
           H Y+VKNG  ++ +LGT L+ MY++CGSI+ A+ VF  + ++    WTA+I GL MHG +
Sbjct: 274 HDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHGYS 333

Query: 399 TQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGC 458
            ++L  F  M   G+ P  ITF  VL+ACSH GLV  G + F  M  D+ +EP +EHYGC
Sbjct: 334 ERSLKYFATMVEAGLTPRDITFTAVLSACSHGGLVERGFQIFESMKRDHRVEPRLEHYGC 393

Query: 459 LVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDT 518
           +VD+L R G LEEA+  +  MP++PN  +W +LL   R H N +IGE     LI++ P  
Sbjct: 394 MVDLLGRAGKLEEAERFVLKMPVKPNAPVWGALLGACRIHKNAEIGERVGKILIQLLPQH 453

Query: 519 IGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQT 578
            G YV+LSNIYA A +W+KV+E+R+MMK +G +K PG S IE  G +H+F +GD SHP+ 
Sbjct: 454 SGYYVLLSNIYANAKEWEKVTEMRQMMKAKGLKKPPGHSLIELDGRVHKFTIGDSSHPEM 513

Query: 579 DEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRS 638
           D+I     E+  +++AAG+  +T   L  I D++EKE+ L  HSE+LAIAFG++  ++ +
Sbjct: 514 DKIERMWEEILMRIRAAGYRGNTADALFDI-DEEEKESALHRHSEKLAIAFGMMRSEAGT 572

Query: 639 PIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           PIRIVKNLRVC DCH+ TKL+S ++ RE+IVRD +RFHHF+ G CSC D+W
Sbjct: 573 PIRIVKNLRVCEDCHTATKLISKVFGRELIVRDRNRFHHFRQGLCSCMDYW 623



 Score =  178 bits (452), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 121/447 (27%), Positives = 209/447 (46%), Gaps = 75/447 (16%)

Query: 40  LHALSVKTNLIYHSGISSRLLSLYVDPHINN--LHYARSIFDRILQHPSLVLYNLLIKCY 97
           +HA  ++T++I     +SRL++  VDP      + YA  IF +I Q+P+L ++N +I+ +
Sbjct: 36  IHAYMIRTHIICDVFAASRLIAFCVDPSSGTSLIDYASRIFSQI-QNPNLFIFNAMIRGH 94

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
             ++   +A   +     + LLPDN T P ++K   +L  I  G Q HG + K GF  D 
Sbjct: 95  SGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKLHCISMGSQAHGHIIKHGFEKDV 154

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
           +V +SLV MYA FG+ +    +F  M   D+VSW  +I G+ K G+VE A KLFD+MP++
Sbjct: 155 YVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGFNKCGDVESARKLFDQMPEK 214

Query: 218 DLFSWTCLVDGFSKCGKVEIAREIFYRMPNR----------------------------- 248
           +L +W+ ++ G+++    + A E+F  + ++                             
Sbjct: 215 NLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMVSVISSCAHLGALELGERAH 274

Query: 249 ----------NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFM 298
                     NL+   A+++ Y + G +D A  +F+D+  RD ++W ++IAG  ++G   
Sbjct: 275 DYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHGYSE 334

Query: 299 EALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLI 358
            +L+   TM+   + P D T  + LSA +           H  +V+ GF +         
Sbjct: 335 RSLKYFATMVEAGLTPRDITFTAVLSACS-----------HGGLVERGFQI--------- 374

Query: 359 QMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI 418
                    ES     R   + ++ H+  M+  LG  G   +A      + +M +KP A 
Sbjct: 375 --------FESMKRDHRV--EPRLEHYGCMVDLLGRAGKLEEAERF---VLKMPVKPNAP 421

Query: 419 TFIGVLNACSHAGLVNDGRRYFNMMIN 445
            +  +L AC        G R   ++I 
Sbjct: 422 VWGALLGACRIHKNAEIGERVGKILIQ 448


>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g08820
 gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
 gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
 gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 685

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 261/690 (37%), Positives = 383/690 (55%), Gaps = 32/690 (4%)

Query: 26  NILKFSSTHKETQQLHAL-SVKTNLIYHSGISSRLLS--LYVDPHINNLHYARSIFDRIL 82
           +I+   S   + QQ+  L SV   + +   I   L++  L+ D  + NL   R++F R  
Sbjct: 2   SIVTVPSATSKVQQIKTLISVACTVNHLKQIHVSLINHHLHHDTFLVNLLLKRTLFFRQT 61

Query: 83  ----------QHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGA 132
                     Q P++ LYN LI  +V N   HE L LF  +    L    FT P V+K  
Sbjct: 62  KYSYLLFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKAC 121

Query: 133 ARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWN 192
            R  + K G  +H LV K GF  D   ++SL+S+Y+  G ++   ++FD + D+ +V+W 
Sbjct: 122 TRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWT 181

Query: 193 CLIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKC---GKVEIAREIFY 243
            L  GY   G    A+ LF +M      PD        +V   S C   G ++    I  
Sbjct: 182 ALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYF-----IVQVLSACVHVGDLDSGEWIVK 236

Query: 244 RMP----NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFME 299
            M      +N      ++N Y K G ++ A  +FD M  +D++TW++MI GY  N    E
Sbjct: 237 YMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKE 296

Query: 300 ALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQ 359
            +EL   ML  ++ P+  ++V  LS+ A L  L+ G W  S I ++ F+ +  +   LI 
Sbjct: 297 GIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALID 356

Query: 360 MYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAIT 419
           MY+KCG++     VF+ + +K +    A I GL  +G    +  +F +  ++G+ P   T
Sbjct: 357 MYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGST 416

Query: 420 FIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM 479
           F+G+L  C HAGL+ DG R+FN +   Y ++ T+EHYGC+VD+  R G L++A   I  M
Sbjct: 417 FLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDM 476

Query: 480 PMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVS 539
           PMRPN ++W +LLSG R   +  + E     LI + P   G YV LSNIY+  G+WD+ +
Sbjct: 477 PMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAA 536

Query: 540 EVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVP 599
           EVR+MM K+G +K PG S IE  G +HEF+  DKSHP +D+I++KL ++ N+++  G VP
Sbjct: 537 EVRDMMNKKGMKKIPGYSWIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVP 596

Query: 600 DTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLL 659
            T  V   +E++ EKE  L  HSE+LA+A GLI+      IR+VKNLRVC DCH V KL+
Sbjct: 597 TTEFVFFDVEEE-EKERVLGYHSEKLAVALGLISTDHGQVIRVVKNLRVCGDCHEVMKLI 655

Query: 660 SGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           S I  REI+VRDN+RFH F NGSCSC D+W
Sbjct: 656 SKITRREIVVRDNNRFHCFTNGSCSCNDYW 685


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 242/659 (36%), Positives = 380/659 (57%), Gaps = 19/659 (2%)

Query: 40  LHALSVKTNLIYHSGISSRL-------LSLYVDPHINN--LHYARSIFDRILQHPSLVLY 90
           LHAL V ++L     +   +        ++ +  H N+  +  AR  FD +      V +
Sbjct: 176 LHALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANHGLVSLARHYFD-LAPEKDAVSW 234

Query: 91  NLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFK 150
           N ++  YV N R  EA  LF    D     D  +   ++ G  +   I+E +++    F 
Sbjct: 235 NGMLAAYVRNGRIQEARELF----DSRTEWDAISWNALMAGYVQRSQIEEAQKM----FN 286

Query: 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
                D    +++VS YA+ G++   RR+FD    +D+ +W  ++ GY + G +E A ++
Sbjct: 287 KMPQRDVVSWNTMVSGYARRGDMAEARRLFDVAPIRDVFTWTAIVSGYAQNGMLEEAKRV 346

Query: 211 FDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSAC 270
           FD MPD++  SW  ++  + +   +E A+E+F  MP RN+ SWN M+ GY +AG +D A 
Sbjct: 347 FDAMPDKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVASWNTMLTGYAQAGMLDEAR 406

Query: 271 ELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLA 330
            +F  M  +D ++W +M+A Y   G   E L+L + M       N +     LS  A +A
Sbjct: 407 AIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCADIA 466

Query: 331 VLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIV 390
            L  G  +HS ++K G+ V   +G  L+ MY KCGS+E A + F  + ++ V  W  MI 
Sbjct: 467 ALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEMEERDVVSWNTMIA 526

Query: 391 GLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIE 450
           G   HG   +AL++F+ M +   KP  IT +GVL ACSH+GLV  G  YF  M  D+G+ 
Sbjct: 527 GYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHRDFGVA 586

Query: 451 PTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANN 510
              EHY C++D+L R G L+EA + ++ MP  P+  +W +LL  +R H N ++G  AA  
Sbjct: 587 TKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGASRIHRNSELGRNAAEK 646

Query: 511 LIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVV 570
           + ++ P+  G YV+LSNIYA++G+W  V ++R +M +RG +K PG S IE +  +H F V
Sbjct: 647 IFELEPENAGMYVLLSNIYASSGKWRDVDKMRHIMHERGVKKVPGFSWIEVQNKVHTFSV 706

Query: 571 GDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFG 630
           GD  HP+ ++I++ L ++  ++K AG+V  T  VL  +E++ EKE  L+ HSE+LA+A+G
Sbjct: 707 GDSVHPEREDIYAFLEDLDIRMKKAGYVSATDMVLHDVEEE-EKEHMLKYHSEKLAVAYG 765

Query: 631 LINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           ++ +    PIR++KNLRVC DCH+  K +S I  R II+RD++RFHHF++GSCSC D+W
Sbjct: 766 ILKIPPGRPIRVIKNLRVCRDCHTAFKCISAIEGRLIILRDSNRFHHFRDGSCSCGDYW 824



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 112/443 (25%), Positives = 189/443 (42%), Gaps = 76/443 (17%)

Query: 86  SLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIH 145
           S   YN ++  Y  N R  +AL+ F  +      PD+F+                    +
Sbjct: 137 STSTYNTMLAGYAANGRLPQALSFFRSIPR----PDSFSY-------------------N 173

Query: 146 GLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVE 205
            L+  LG      V SSL  +          R +FD M  KD VS+N +I  +   G V 
Sbjct: 174 TLLHALG------VSSSLADV----------RALFDEMPVKDSVSYNVMISSHANHGLVS 217

Query: 206 VAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGD 265
           +A   FD  P++D  SW  ++  + + G+++ ARE+F      + +SWNA++ GY++   
Sbjct: 218 LARHYFDLAPEKDAVSWNGMLAAYVRNGRIQEARELFDSRTEWDAISWNALMAGYVQRSQ 277

Query: 266 VDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL---------PND 316
           ++ A ++F+ M  RD+++WN+M++GY   G   EA  L +   I DV            +
Sbjct: 278 IEEAQKMFNKMPQRDVVSWNTMVSGYARRGDMAEARRLFDVAPIRDVFTWTAIVSGYAQN 337

Query: 317 ATLVSALSAVAGLAVLNKGRW---MHSYIVK----------NGFVVDGVLG-TLLIQMYS 362
             L  A      +   N   W   M +Y+ +          +      V     ++  Y+
Sbjct: 338 GMLEEAKRVFDAMPDKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVASWNTMLTGYA 397

Query: 363 KCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIG 422
           + G ++ A  +F  + +K    W AM+      G + + L LF +M R G       F  
Sbjct: 398 QAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFAC 457

Query: 423 VLNACSHAGLVNDGRRYFNMMIN-DYGIEPTIEHYGCLVD-----ILCRTGYLEEAKSTI 476
           VL+ C+    +  G +  + +I   YG+       GC V      +  + G +EEA S  
Sbjct: 458 VLSTCADIAALECGMQLHSRLIKAGYGV-------GCFVGNALLAMYFKCGSMEEAHSAF 510

Query: 477 ESMPMRPNFVIWMSLLSGARNHG 499
           E M  R + V W ++++G   HG
Sbjct: 511 EEMEER-DVVSWNTMIAGYARHG 532



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 98/394 (24%), Positives = 174/394 (44%), Gaps = 25/394 (6%)

Query: 161 SSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLF 220
           +++++ YA  G +      F ++   D  S+N L+        +     LFDEMP +D  
Sbjct: 142 NTMLAGYAANGRLPQALSFFRSIPRPDSFSYNTLLHALGVSSSLADVRALFDEMPVKDSV 201

Query: 221 SWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRD 280
           S+  ++   +  G V +AR  F   P ++ VSWN M+  Y++ G +  A ELFD     D
Sbjct: 202 SYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRIQEARELFDSRTEWD 261

Query: 281 LITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHS 340
            I+WN+++AGY    +  EA ++   M   DV+  + T+VS  +    +A   +      
Sbjct: 262 AISWNALMAGYVQRSQIEEAQKMFNKMPQRDVVSWN-TMVSGYARRGDMAEARR------ 314

Query: 341 YIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQ 400
            +     + D    T ++  Y++ G +E A  VF A+  K    W AM+       M  +
Sbjct: 315 -LFDVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAMPDKNAVSWNAMMAAYVQRRMMEE 373

Query: 401 ALDLFNKM-CRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCL 459
           A +LF+ M CR        ++  +L   + AG++++ R  F MM     +      +  +
Sbjct: 374 AKELFDAMPCR-----NVASWNTMLTGYAQAGMLDEARAIFGMMPQKDAVS-----WAAM 423

Query: 460 VDILCRTGYLEEAKSTIESMPMRPNFV---IWMSLLSGARNHGNKDIGEYAANNLIKVAP 516
           +    + G+ EE     + M     +V    +  +LS   +    + G    + LIK A 
Sbjct: 424 LAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHSRLIK-AG 482

Query: 517 DTIGCYV--VLSNIYAAAGQWDKVSEVREMMKKR 548
             +GC+V   L  +Y   G  ++     E M++R
Sbjct: 483 YGVGCFVGNALLAMYFKCGSMEEAHSAFEEMEER 516



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 75/331 (22%), Positives = 151/331 (45%), Gaps = 18/331 (5%)

Query: 164 VSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWT 223
           ++ + + G +    R+F AM  +   ++N ++ GY   G +  A+  F  +P  D FS+ 
Sbjct: 114 ITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSIPRPDSFSYN 173

Query: 224 CLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLIT 283
            L+        +   R +F  MP ++ VS+N MI+ +   G V  A   FD    +D ++
Sbjct: 174 TLLHALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANHGLVSLARHYFDLAPEKDAVS 233

Query: 284 WNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIV 343
           WN M+A Y  NGR  EA EL ++    D +  +A +   +      + + + + M + + 
Sbjct: 234 WNGMLAAYVRNGRIQEARELFDSRTEWDAISWNALMAGYVQ----RSQIEEAQKMFNKMP 289

Query: 344 KNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALD 403
           +     D V    ++  Y++ G +  A  +F     + V  WTA++ G   +GM  +A  
Sbjct: 290 QR----DVVSWNTMVSGYARRGDMAEARRLFDVAPIRDVFTWTAIVSGYAQNGMLEEAKR 345

Query: 404 LFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDIL 463
           +F+ M        A+++  ++ A     ++ + +  F+ M         +  +  ++   
Sbjct: 346 VFDAMP----DKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCR-----NVASWNTMLTGY 396

Query: 464 CRTGYLEEAKSTIESMPMRPNFVIWMSLLSG 494
            + G L+EA++    MP + + V W ++L+ 
Sbjct: 397 AQAGMLDEARAIFGMMPQK-DAVSWAAMLAA 426



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 66/319 (20%), Positives = 138/319 (43%), Gaps = 20/319 (6%)

Query: 185 DKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYR 244
           D +++  N  I  +++ G V  A +LF  MP R   ++  ++ G++  G++  A   F  
Sbjct: 104 DMEVIRRNRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRS 163

Query: 245 MPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELL 304
           +P  +  S+N +++    +  +     LFD+M ++D +++N MI+ +  +G    A    
Sbjct: 164 IPRPDSFSYNTLLHALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANHGLVSLARHYF 223

Query: 305 ETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSY-IVKNGFVVDGVLGTLLIQMYSK 363
           +     D +  +  L          A +  GR   +  +  +    D +    L+  Y +
Sbjct: 224 DLAPEKDAVSWNGMLA---------AYVRNGRIQEARELFDSRTEWDAISWNALMAGYVQ 274

Query: 364 CGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGV 423
              IE A  +F  + ++ V  W  M+ G    G   +A  LF+    +       T+  +
Sbjct: 275 RSQIEEAQKMFNKMPQRDVVSWNTMVSGYARRGDMAEARRLFD----VAPIRDVFTWTAI 330

Query: 424 LNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRP 483
           ++  +  G++ + +R F+ M +   +      +  ++    +   +EEAK   ++MP R 
Sbjct: 331 VSGYAQNGMLEEAKRVFDAMPDKNAVS-----WNAMMAAYVQRRMMEEAKELFDAMPCR- 384

Query: 484 NFVIWMSLLSGARNHGNKD 502
           N   W ++L+G    G  D
Sbjct: 385 NVASWNTMLTGYAQAGMLD 403



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 76/328 (23%), Positives = 139/328 (42%), Gaps = 40/328 (12%)

Query: 246 PNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLE 305
           P+  ++  N  I  +M+AG V  A  LF  M  R   T+N+M+AGY  NGR  +AL    
Sbjct: 103 PDMEVIRRNRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFR 162

Query: 306 TMLIGDVLPNDATLVSALSAVAGLAVLN------------KGRWMHSYIVKNGFVV---- 349
           ++   D    + TL+ AL   + LA +                 M S    +G V     
Sbjct: 163 SIPRPDSFSYN-TLLHALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANHGLVSLARH 221

Query: 350 --------DGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQA 401
                   D V    ++  Y + G I+ A  +F + ++     W A++ G        +A
Sbjct: 222 YFDLAPEKDAVSWNGMLAAYVRNGRIQEARELFDSRTEWDAISWNALMAGYVQRSQIEEA 281

Query: 402 LDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMM-INDYGIEPTIEHYGCLV 460
             +FNKM +  +    +++  +++  +  G + + RR F++  I D      +  +  +V
Sbjct: 282 QKMFNKMPQRDV----VSWNTMVSGYARRGDMAEARRLFDVAPIRD------VFTWTAIV 331

Query: 461 DILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIG 520
               + G LEEAK   ++MP + N V W ++++    +  + + E A      +    + 
Sbjct: 332 SGYAQNGMLEEAKRVFDAMPDK-NAVSWNAMMAA---YVQRRMMEEAKELFDAMPCRNVA 387

Query: 521 CYVVLSNIYAAAGQWDKVSEVREMMKKR 548
            +  +   YA AG  D+   +  MM ++
Sbjct: 388 SWNTMLTGYAQAGMLDEARAIFGMMPQK 415


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 254/677 (37%), Positives = 407/677 (60%), Gaps = 23/677 (3%)

Query: 27  ILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPS 86
           +LK   T  + +++H    K    +   +++ L+ +Y       +  ARS+FD  +    
Sbjct: 181 VLKACQTLVDGRKIHCWVFKLGFQWDVFVAASLIHMY--SRFGFVGIARSLFDD-MPFRD 237

Query: 87  LVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLP----DNFTLPCVIKGAARLGAIKEGK 142
           +  +N +I   + N  + +AL    D+LD   L     D+ T+  ++   A+LG I    
Sbjct: 238 MGSWNAMISGLIQNGNAAQAL----DVLDEMRLEGINMDSVTVASILPVCAQLGDISTAT 293

Query: 143 QIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKG 202
            IH  V K G  F+ FV ++L++MYAKFG +   ++VF  M  +D+VSWN +I  Y +  
Sbjct: 294 LIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQND 353

Query: 203 EVEVAMKLFDEMP----DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRN-----LVSW 253
           +   A   F +M     + DL +   L    ++    + +R +   +  R      +V  
Sbjct: 354 DPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIG 413

Query: 254 NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETML-IGDV 312
           NA+++ Y K G +DSA ++F+ + ++D+++WN++I+GY  NG   EA+E+   M    ++
Sbjct: 414 NAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREI 473

Query: 313 LPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALT 372
             N  T VS L+A A +  L +G  +H +++K    +D  +GT LI +Y KCG +  A+ 
Sbjct: 474 KLNQGTWVSILAAYAHVGALQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMC 533

Query: 373 VFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGL 432
           +F  + ++    W A+I   G+HG   +AL LF +M   G+KP  +TFI +L+ACSH+GL
Sbjct: 534 LFYQVPRESSVPWNAIISCHGIHGHGEKALKLFREMQDEGVKPDHVTFISLLSACSHSGL 593

Query: 433 VNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLL 492
           V++G+ +F++M  +YGI+P+++HYGC+VD+L R G+LE A   I+ MP+ P+  IW +LL
Sbjct: 594 VDEGKWFFHLM-QEYGIKPSLKHYGCMVDLLGRAGFLEMAYDFIKDMPLHPDASIWGALL 652

Query: 493 SGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRK 552
              R HGN ++G++A++ L +V  + +G YV+LSNIYA  G+W+ V +VR + ++RG +K
Sbjct: 653 GACRIHGNIELGKFASDRLFEVDSENVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKK 712

Query: 553 DPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQK 612
            PG SSIE    +  F  G++SHP+  EI+++L  +  K+K+ G++PD + VL  +E + 
Sbjct: 713 TPGWSSIEVNRRVDIFYTGNQSHPKCKEIYAELRILTAKMKSLGYIPDYSFVLQDVE-ED 771

Query: 613 EKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDN 672
           EKE  L +HSERLAIAFG+I+   +S IRI KNLRVC DCH+ TK +S I  REI+VRD+
Sbjct: 772 EKEHILTSHSERLAIAFGIISTPPKSAIRIFKNLRVCGDCHNATKFISRITEREIVVRDS 831

Query: 673 SRFHHFKNGSCSCKDFW 689
            RFHHFKNG CSC D+W
Sbjct: 832 KRFHHFKNGICSCGDYW 848



 Score =  219 bits (557), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 173/573 (30%), Positives = 289/573 (50%), Gaps = 36/573 (6%)

Query: 11  PIHALQQHLPSRLHWNILKFSSTHKE--TQQLHALSVKTNLIYHSGISSRLLSLYVDPHI 68
           P H  Q      + +N L F S  K    ++LHAL V +  I  + IS RL++LY    +
Sbjct: 65  PFHWRQPAKNEEIDFNSL-FDSCTKTLLAKRLHALLVVSGKIQSNFISIRLVNLYAS--L 121

Query: 69  NNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL--DRFLLPDNFTLP 126
            ++  +R  FD+I Q   +  +N +I  YV N    EA+  F  LL   +F   D +T P
Sbjct: 122 GDVSLSRGTFDQI-QRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKF-QADFYTFP 179

Query: 127 CVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK 186
            V+K    L    +G++IH  VFKLGF +D FV +SL+ MY++FG + + R +FD M  +
Sbjct: 180 PVLKACQTL---VDGRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFR 236

Query: 187 DLVSWNCLIDGYVKKGEVEVAMKLFDEMP----DRDLFSWTCLVDGFSKCGKVEIAREIF 242
           D+ SWN +I G ++ G    A+ + DEM     + D  +   ++   ++ G +  A  I 
Sbjct: 237 DMGSWNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIH 296

Query: 243 YRMPNRNL-----VSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRF 297
             +    L     VS NA+IN Y K G++  A ++F  M +RD+++WNS+IA YE N   
Sbjct: 297 LYVIKHGLEFELFVS-NALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDP 355

Query: 298 MEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDG-VLGTL 356
           + A      M +  + P+  TLVS  S  A        R +H +I++ G++++  V+G  
Sbjct: 356 VTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNA 415

Query: 357 LIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKM--CRMGMK 414
           ++ MY+K G I+SA  VF  I  K V  W  +I G   +G+A++A++++  M  CR  +K
Sbjct: 416 VMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECRE-IK 474

Query: 415 PTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKS 474
               T++ +L A +H G +  G R    +I    +   +    CL+D+  + G L +A  
Sbjct: 475 LNQGTWVSILAAYAHVGALQQGMRIHGHLIKT-NLHLDVFVGTCLIDLYGKCGRLVDAMC 533

Query: 475 TIESMPMRPNFVIWMSLLS--GARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAA 532
               +P R + V W +++S  G   HG K +  +       V PD +  ++ L +  + +
Sbjct: 534 LFYQVP-RESSVPWNAIISCHGIHGHGEKALKLFREMQDEGVKPDHV-TFISLLSACSHS 591

Query: 533 GQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVL 565
           G  D+      +M++ G +      S++H G +
Sbjct: 592 GLVDEGKWFFHLMQEYGIK-----PSLKHYGCM 619


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 241/659 (36%), Positives = 378/659 (57%), Gaps = 19/659 (2%)

Query: 40  LHALSVKTNLIYHSGI-------SSRLLSLYVDPHINN--LHYARSIFDRILQHPSLVLY 90
           LHAL+V ++L    G+        S   ++ +  H N+  +  AR  FD +      V +
Sbjct: 107 LHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFD-LAPEKDAVSW 165

Query: 91  NLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFK 150
           N ++  YV N R  EA  LF    +     D  +   ++ G  + G + E +++    F 
Sbjct: 166 NGMLAAYVRNGRVEEARGLFNSRTEW----DAISWNALMSGYVQWGKMSEAREL----FD 217

Query: 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
              G D    + +VS YA+ G++   RR+FDA   +D+ +W  ++ GY + G +E A ++
Sbjct: 218 RMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRV 277

Query: 211 FDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSAC 270
           FD MP+R+  SW  +V  + +   ++ A+E+F  MP RN+ SWN M+ GY +AG ++ A 
Sbjct: 278 FDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAK 337

Query: 271 ELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLA 330
            +FD M  +D ++W +M+A Y   G   E L+L   M       N +     LS  A +A
Sbjct: 338 AVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIA 397

Query: 331 VLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIV 390
            L  G  +H  +++ G+ V   +G  L+ MY KCG++E A   F  + ++ V  W  MI 
Sbjct: 398 ALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIA 457

Query: 391 GLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIE 450
           G   HG   +AL++F+ M     KP  IT +GVL ACSH+GLV  G  YF  M +D+G+ 
Sbjct: 458 GYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVT 517

Query: 451 PTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANN 510
              EHY C++D+L R G L EA   ++ MP  P+  +W +LL  +R H N ++G  AA  
Sbjct: 518 AKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEK 577

Query: 511 LIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVV 570
           + ++ P+  G YV+LSNIYA++G+W    ++R MM++RG +K PG S IE +  +H F  
Sbjct: 578 IFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSA 637

Query: 571 GDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFG 630
           GD  HP+ ++I++ L ++  ++K AG+V  T  VL  +E++ EKE  L+ HSE+LA+A+G
Sbjct: 638 GDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLHDVEEE-EKEHMLKYHSEKLAVAYG 696

Query: 631 LINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           ++N+    PIR++KNLRVC DCH+  K +S I  R I++RD++RFHHF+ GSCSC D+W
Sbjct: 697 ILNIPPGRPIRVIKNLRVCGDCHNAFKYISAIEGRLILLRDSNRFHHFRGGSCSCGDYW 755



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 111/448 (24%), Positives = 194/448 (43%), Gaps = 53/448 (11%)

Query: 85  PSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQI 144
           P ++  N  I  ++   R  +A  LF  +  R       T   ++ G +  G +     +
Sbjct: 36  PEVIRSNKAITAHMRAGRVADAERLFAAMPRR----STSTYNAMLAGYSANGRLP----L 87

Query: 145 HGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEV 204
              +F+     D +  ++L+   A    +   R +FD M  +D V++N +I  +   G V
Sbjct: 88  AASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLV 147

Query: 205 EVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAG 264
            +A   FD  P++D  SW  ++  + + G+VE AR +F      + +SWNA+++GY++ G
Sbjct: 148 SLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDAISWNALMSGYVQWG 207

Query: 265 DVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS 324
            +  A ELFD M  RD+++WN M++GY   G  +EA  L +   + DV     T  + +S
Sbjct: 208 KMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVF----TWTAVVS 263

Query: 325 AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQM------------------------ 360
             A   +L + R +   + +   V    +    IQ                         
Sbjct: 264 GYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTM 323

Query: 361 ---YSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA 417
              Y++ G +E A  VF  + +K    W AM+      G + + L LF +M R G     
Sbjct: 324 LTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNR 383

Query: 418 ITFIGVLNACSHAGLVNDGRRYFNMMIN-DYGIEPTIEHYGCLVD-----ILCRTGYLEE 471
             F  VL+ C+    +  G +    +I   YG+       GC V      +  + G +E+
Sbjct: 384 SAFACVLSTCADIAALECGMQLHGRLIRAGYGV-------GCFVGNALLAMYFKCGNMED 436

Query: 472 AKSTIESMPMRPNFVIWMSLLSGARNHG 499
           A++  E M  R + V W ++++G   HG
Sbjct: 437 ARNAFEEMEER-DVVSWNTMIAGYARHG 463



 Score = 99.4 bits (246), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 76/346 (21%), Positives = 152/346 (43%), Gaps = 49/346 (14%)

Query: 185 DKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYR 244
           + +++  N  I  +++ G V  A +LF  MP R   ++  ++ G+S  G++ +A  +F  
Sbjct: 35  EPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRA 94

Query: 245 MPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLIT--------------------- 283
           +P  +  S+N +++    +  +  A  LFD+M +RD +T                     
Sbjct: 95  IPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYF 154

Query: 284 ----------WNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLN 333
                     WN M+A Y  NGR  EA  L  +    D +  +A     +S       ++
Sbjct: 155 DLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDAISWNAL----MSGYVQWGKMS 210

Query: 334 KGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLG 393
           + R +   +       D V   +++  Y++ G +  A  +F A   + V  WTA++ G  
Sbjct: 211 EARELFDRMPGR----DVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYA 266

Query: 394 MHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTI 453
            +GM  +A  +F+ M     +  A+++  ++ A     ++++ +  FNMM         +
Sbjct: 267 QNGMLEEARRVFDAMP----ERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCR-----NV 317

Query: 454 EHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
             +  ++    + G LEEAK+  ++MP + + V W ++L+     G
Sbjct: 318 ASWNTMLTGYAQAGMLEEAKAVFDTMPQK-DAVSWAAMLAAYSQGG 362


>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g26782, mitochondrial; Flags: Precursor
 gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 256/650 (39%), Positives = 375/650 (57%), Gaps = 21/650 (3%)

Query: 57  SRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDR 116
           SRLL         NL    ++F+R +    +  +N +I     +  S EAL  F  +   
Sbjct: 14  SRLLHTERHTERQNL---TTLFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKL 70

Query: 117 FLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLG 176
            L P   + PC IK  + L  I  GKQ H   F  G+  D FV S+L+ MY+  G+++  
Sbjct: 71  SLYPTRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDA 130

Query: 177 RRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLF-----DEMPDRD--LFSWTCLVDGF 229
           R+VFD +  +++VSW  +I GY   G    A+ LF     DE  D D        LV   
Sbjct: 131 RKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVI 190

Query: 230 SKCGKV-------EIAREIFYRMPNRNLVSWNAMINGYMKAGD--VDSACELFDDMEIRD 280
           S C +V        I   +  R  +R +   N +++ Y K G+  V  A ++FD +  +D
Sbjct: 191 SACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKD 250

Query: 281 LITWNSMIAGYELNGRFMEALELLETMLIGDVLP-NDATLVSALSAVAGLAVLNKGRWMH 339
            +++NS+++ Y  +G   EA E+   ++   V+  N  TL + L AV+    L  G+ +H
Sbjct: 251 RVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIH 310

Query: 340 SYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMAT 399
             +++ G   D ++GT +I MY KCG +E+A   F  +  K V  WTAMI G GMHG A 
Sbjct: 311 DQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAA 370

Query: 400 QALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCL 459
           +AL+LF  M   G++P  ITF+ VL ACSHAGL  +G R+FN M   +G+EP +EHYGC+
Sbjct: 371 KALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCM 430

Query: 460 VDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTI 519
           VD+L R G+L++A   I+ M M+P+ +IW SLL+  R H N ++ E +   L ++     
Sbjct: 431 VDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNC 490

Query: 520 GCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTD 579
           G Y++LS+IYA AG+W  V  VR +MK RG  K PG S +E  G +H F++GD+ HPQ +
Sbjct: 491 GYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQRE 550

Query: 580 EIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSP 639
           +I+  L+E+  KL  AG+V +T+ V   + D++EKE  L  HSE+LAIAFG++N    S 
Sbjct: 551 KIYEFLAELNRKLLEAGYVSNTSSVCHDV-DEEEKEMTLRVHSEKLAIAFGIMNTVPGST 609

Query: 640 IRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           + +VKNLRVC+DCH+V KL+S I +RE +VRD  RFHHFK+G CSC D+W
Sbjct: 610 VNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 126/265 (47%), Gaps = 12/265 (4%)

Query: 37  TQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKC 96
           T+ +H+  +K        + + LL  Y       +  AR IFD+I+     V YN ++  
Sbjct: 202 TESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDR-VSYNSIMSV 260

Query: 97  YVFNQRSHEALTLFCDLLDRFLLPDN-FTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF 155
           Y  +  S+EA  +F  L+   ++  N  TL  V+   +  GA++ GK IH  V ++G   
Sbjct: 261 YAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLED 320

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP 215
           D  V +S++ MY K G ++  R+ FD M +K++ SW  +I GY   G    A++LF  M 
Sbjct: 321 DVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMI 380

Query: 216 DRDLF-SWTCLVDGFSKCGKVEIARE---IFYRMPNR-----NLVSWNAMINGYMKAGDV 266
           D  +  ++   V   + C    +  E    F  M  R      L  +  M++   +AG +
Sbjct: 381 DSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFL 440

Query: 267 DSACELFDDMEIR-DLITWNSMIAG 290
             A +L   M+++ D I W+S++A 
Sbjct: 441 QKAYDLIQRMKMKPDSIIWSSLLAA 465


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 254/677 (37%), Positives = 404/677 (59%), Gaps = 23/677 (3%)

Query: 27  ILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPS 86
           +LK   T  + +++H  + K    ++  +++ L+ +Y       +  ARS+FD  +    
Sbjct: 224 VLKACGTLVDGRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGI--ARSLFDD-MPFRD 280

Query: 87  LVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPD---NF-TLPCVIKGAARLGAIKEGK 142
           +  +N +I   + N  + +AL    D+LD   L     NF T+  ++    +LG I    
Sbjct: 281 MGSWNAMISGLIQNGNAAQAL----DVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAM 336

Query: 143 QIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKG 202
            IH  V K G  FD FV ++L++MYAKFG ++  R+ F  M   D+VSWN +I  Y +  
Sbjct: 337 LIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQND 396

Query: 203 EVEVAMKLFDEMP----DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR-----NLVSW 253
           +   A   F +M       DL +   L    ++    + +R +   +  R     ++V  
Sbjct: 397 DPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIG 456

Query: 254 NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETML-IGDV 312
           NA+++ Y K G +DSA ++F+ + ++D+I+WN++I GY  NG   EA+E+ + M    ++
Sbjct: 457 NAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEI 516

Query: 313 LPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALT 372
           +PN  T VS L A A +  L +G  +H  ++K    +D  + T LI +Y KCG +  A++
Sbjct: 517 IPNQGTWVSILPAYAHVGALQQGMRIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMS 576

Query: 373 VFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGL 432
           +F  + ++    W A+I   G+HG A + L LF +M   G+KP  +TF+ +L+ACSH+G 
Sbjct: 577 LFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGF 636

Query: 433 VNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLL 492
           V +G+  F +M  +YGI+P+++HYGC+VD+L R GYLE A   I+ MP++P+  IW +LL
Sbjct: 637 VEEGKWCFRLM-QEYGIKPSLKHYGCMVDLLGRAGYLEMAYGFIKDMPLQPDASIWGALL 695

Query: 493 SGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRK 552
              R HGN ++G++A++ L +V    +G YV+LSNIYA  G+W+ V +VR + ++RG +K
Sbjct: 696 GACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKK 755

Query: 553 DPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQK 612
            PG S+IE    +  F  G++SHP+  EI+ +L  +  K+K+ G++PD + VL  +E+  
Sbjct: 756 TPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEED- 814

Query: 613 EKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDN 672
           EKE  L +HSERLAIAFG+I+   +SPIRI KNLRVC DCH+ TK +S I  REI+VRD+
Sbjct: 815 EKEHILTSHSERLAIAFGIISTPPKSPIRIFKNLRVCGDCHNATKFISRITQREIVVRDS 874

Query: 673 SRFHHFKNGSCSCKDFW 689
           +RFHHFK+G CSC D+W
Sbjct: 875 NRFHHFKDGICSCGDYW 891



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 167/563 (29%), Positives = 279/563 (49%), Gaps = 38/563 (6%)

Query: 22  RLHWNILKFSSTHKETQQ-LHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDR 80
            + +N L  SST     + LHAL V    +    IS+RL++LY +  + ++  +R  FD+
Sbjct: 119 EIDFNFLFDSSTKTPFAKCLHALLVVAGKVQSIFISTRLVNLYAN--LGDVSLSRCTFDQ 176

Query: 81  ILQHPSLVLYNLLIKCYVFNQRSHEALTLFCD-LLDRFLLPDNFTLPCVIKGAARLGAIK 139
           I Q   +  +N +I  YV N   HEA+  F   LL   + PD +T P V+K     G + 
Sbjct: 177 IPQK-DVYTWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC---GTLV 232

Query: 140 EGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYV 199
           +G++IH   FKLGF ++ FV +SL+ MY++FG   + R +FD M  +D+ SWN +I G +
Sbjct: 233 DGRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLI 292

Query: 200 KKGEVEVAMKLFDEMPDRDL-FSWTCLVDGFSKC---GKVEIAREIFYRMPNR----NLV 251
           + G    A+ + DEM    +  ++  +V     C   G +  A  I   +       +L 
Sbjct: 293 QNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLF 352

Query: 252 SWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGD 311
             NA+IN Y K G+++ A + F  M I D+++WNS+IA YE N   + A      M +  
Sbjct: 353 VSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNG 412

Query: 312 VLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVV-DGVLGTLLIQMYSKCGSIESA 370
             P+  TLVS  S VA        R +H +I++ G+++ D V+G  ++ MY+K G ++SA
Sbjct: 413 FQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSA 472

Query: 371 LTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKM--CRMGMKPTAITFIGVLNACS 428
             VF  I  K V  W  +I G   +G+A++A++++  M  C+  + P   T++ +L A +
Sbjct: 473 HKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKE-IIPNQGTWVSILPAYA 531

Query: 429 HAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIW 488
           H G +  G R    +I    +   +    CL+D+  + G L +A S    +P   + V W
Sbjct: 532 HVGALQQGMRIHGRVIKT-NLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESS-VTW 589

Query: 489 MSLLS--GARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNI----YAAAGQWDKVSEVR 542
            +++S  G   H  K +  +       V PD +    +LS      +   G+W       
Sbjct: 590 NAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKW-----CF 644

Query: 543 EMMKKRGFRKDPGSSSIEHRGVL 565
            +M++ G +      S++H G +
Sbjct: 645 RLMQEYGIKP-----SLKHYGCM 662


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 241/659 (36%), Positives = 378/659 (57%), Gaps = 19/659 (2%)

Query: 40  LHALSVKTNLIYHSGI-------SSRLLSLYVDPHINN--LHYARSIFDRILQHPSLVLY 90
           LHAL+V ++L    G+        S   ++ +  H N+  +  AR  FD +      V +
Sbjct: 107 LHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFD-LAPEKDAVSW 165

Query: 91  NLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFK 150
           N ++  YV N R  EA  LF    +     D  +   ++ G  + G + E +++    F 
Sbjct: 166 NGMLAAYVRNGRVEEARGLFNSRTEW----DVISWNALMSGYVQWGKMSEAREL----FD 217

Query: 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
              G D    + +VS YA+ G++   RR+FDA   +D+ +W  ++ GY + G +E A ++
Sbjct: 218 RMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRV 277

Query: 211 FDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSAC 270
           FD MP+R+  SW  +V  + +   ++ A+E+F  MP RN+ SWN M+ GY +AG ++ A 
Sbjct: 278 FDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAK 337

Query: 271 ELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLA 330
            +FD M  +D ++W +M+A Y   G   E L+L   M       N +     LS  A +A
Sbjct: 338 AVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIA 397

Query: 331 VLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIV 390
            L  G  +H  +++ G+ V   +G  L+ MY KCG++E A   F  + ++ V  W  MI 
Sbjct: 398 ALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIA 457

Query: 391 GLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIE 450
           G   HG   +AL++F+ M     KP  IT +GVL ACSH+GLV  G  YF  M +D+G+ 
Sbjct: 458 GYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVT 517

Query: 451 PTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANN 510
              EHY C++D+L R G L EA   ++ MP  P+  +W +LL  +R H N ++G  AA  
Sbjct: 518 AKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEK 577

Query: 511 LIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVV 570
           + ++ P+  G YV+LSNIYA++G+W    ++R MM++RG +K PG S IE +  +H F  
Sbjct: 578 IFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSA 637

Query: 571 GDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFG 630
           GD  HP+ ++I++ L ++  ++K AG+V  T  VL  +E++ EKE  L+ HSE+LA+A+G
Sbjct: 638 GDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLHDVEEE-EKEHMLKYHSEKLAVAYG 696

Query: 631 LINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           ++N+    PIR++KNLRVC DCH+  K +S I  R I++RD++RFHHF+ GSCSC D+W
Sbjct: 697 ILNIPPGRPIRVIKNLRVCGDCHNAFKYISAIEGRLILLRDSNRFHHFRGGSCSCGDYW 755



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 111/448 (24%), Positives = 195/448 (43%), Gaps = 53/448 (11%)

Query: 85  PSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQI 144
           P ++  N  I  ++   R  +A  LF  +  R       T   ++ G +  G +     +
Sbjct: 36  PEVIRSNKAITAHMRAGRVADAERLFAAMPRR----STSTYNAMLAGYSANGRLP----L 87

Query: 145 HGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEV 204
              +F+     D +  ++L+   A    +   R +FD M  +D V++N +I  +   G V
Sbjct: 88  AASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLV 147

Query: 205 EVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAG 264
            +A   FD  P++D  SW  ++  + + G+VE AR +F      +++SWNA+++GY++ G
Sbjct: 148 SLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWG 207

Query: 265 DVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS 324
            +  A ELFD M  RD+++WN M++GY   G  +EA  L +   + DV     T  + +S
Sbjct: 208 KMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVF----TWTAVVS 263

Query: 325 AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQM------------------------ 360
             A   +L + R +   + +   V    +    IQ                         
Sbjct: 264 GYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTM 323

Query: 361 ---YSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA 417
              Y++ G +E A  VF  + +K    W AM+      G + + L LF +M R G     
Sbjct: 324 LTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNR 383

Query: 418 ITFIGVLNACSHAGLVNDGRRYFNMMIN-DYGIEPTIEHYGCLVD-----ILCRTGYLEE 471
             F  VL+ C+    +  G +    +I   YG+       GC V      +  + G +E+
Sbjct: 384 SAFACVLSTCADIAALECGMQLHGRLIRAGYGV-------GCFVGNALLAMYFKCGNMED 436

Query: 472 AKSTIESMPMRPNFVIWMSLLSGARNHG 499
           A++  E M  R + V W ++++G   HG
Sbjct: 437 ARNAFEEMEER-DVVSWNTMIAGYARHG 463


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 251/629 (39%), Positives = 370/629 (58%), Gaps = 31/629 (4%)

Query: 87  LVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHG 146
           LV +N ++     N++  EAL    +++   + PD FT+  V+   + L  ++ GK++H 
Sbjct: 263 LVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHA 322

Query: 147 LVFKLG-FGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVE 205
              K G    + FV S+LV MY    ++  G RVFD M D+ +  WN +I GY +    E
Sbjct: 323 YALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDE 382

Query: 206 VAMKLFDEMPDR-DLFSWTCLVDG----------FSKCGKVEIAREIFYRMPNRNLVSWN 254
            A+ LF EM +   L + +  + G          FSK  K  I   +  R  +R+    N
Sbjct: 383 EALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSK--KEAIHGFVVKRGLDRDRFVQN 440

Query: 255 AMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGD--- 311
           A+++ Y + G +D A  +F  ME RDL+TWN++I GY  + R  +AL +L  M I +   
Sbjct: 441 ALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVFSERHEDALLMLHKMQILERKA 500

Query: 312 --------VLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSK 363
                   + PN  TL++ L + A L+ L KG+ +H+Y +KN    D  +G+ L+ MY+K
Sbjct: 501 SERASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAK 560

Query: 364 CGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGV 423
           CG ++ +  VF  I  + V  W  +++  GMHG +  A+D+   M   G+KP  +TFI V
Sbjct: 561 CGCLQMSRKVFDQIPIRNVITWNVIVMAYGMHGNSQDAIDMLRMMMVQGVKPNEVTFISV 620

Query: 424 LNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRP 483
             ACSH+G+VN+G + F  M  DYG+EP+ +HY C+VD+L R G ++EA   I  +P   
Sbjct: 621 FAACSHSGMVNEGLKIFYNMKKDYGVEPSSDHYACVVDLLGRAGRVKEAYQLINLIPR-- 678

Query: 484 NF---VIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSE 540
           NF     W SLL   R H N +IGE AA NLI++ P+    YV+L+NIY++AG W K +E
Sbjct: 679 NFDKAGAWSSLLGACRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWYKATE 738

Query: 541 VREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPD 600
           VR  MK +G RK+PG S IEH   +H+FV GD SHPQ++++   L  +  +++  G++PD
Sbjct: 739 VRRNMKAQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLRGYLETLWERMRKEGYIPD 798

Query: 601 TTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLS 660
           T+ VL  +E+  EKE  L  HSE+LAIAFG++N    + IR+ KNLRVCNDCH  TK +S
Sbjct: 799 TSCVLHNVEED-EKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFIS 857

Query: 661 GIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            + +REII+RD  RFHHFKNG+CSC D+W
Sbjct: 858 KVVDREIILRDVRRFHHFKNGTCSCGDYW 886



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 124/415 (29%), Positives = 209/415 (50%), Gaps = 15/415 (3%)

Query: 93  LIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLG 152
           L++  V +    EA+  + D++   + PDNF  P ++K  A L  +  GKQIH  V+K G
Sbjct: 64  LLRSKVRSNLLREAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVYKFG 123

Query: 153 FGFDKF-VLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLF 211
           +G D   V ++LV++Y K G+     +VFD + +++ VSWN LI       + E+A++ F
Sbjct: 124 YGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAF 183

Query: 212 DEMPDRD-------LFSWTCLVDGFSKCGKVEIAREIF-YRMPNRNLVSW--NAMINGYM 261
             M D D       L S       F     + + +++  Y +    L S+  N ++  Y 
Sbjct: 184 RCMLDEDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKGELNSFIINTLVAMYG 243

Query: 262 KAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVS 321
           K G + S+  L    E RDL+TWN++++    N +F+EALE L  M++  V P+  T+ S
Sbjct: 244 KMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISS 303

Query: 322 ALSAVAGLAVLNKGRWMHSYIVKNGFV-VDGVLGTLLIQMYSKCGSIESALTVFRAISKK 380
            L A + L +L  G+ +H+Y +KNG +  +  +G+ L+ MY  C  + S   VF  +  +
Sbjct: 304 VLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDR 363

Query: 381 KVGHWTAMIVGLGMHGMATQALDLFNKMCR-MGMKPTAITFIGVLNACSHAGLVNDGRRY 439
           K+G W AMI G   +    +AL LF +M    G+   + T  GV+ AC  +G  +     
Sbjct: 364 KIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSKKEAI 423

Query: 440 FNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG 494
              ++   G++        L+D+  R G ++ AK     M  R + V W ++++G
Sbjct: 424 HGFVVKR-GLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDR-DLVTWNTIITG 476



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 112/448 (25%), Positives = 203/448 (45%), Gaps = 28/448 (6%)

Query: 77  IFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLG 136
           +FDRI +  + V +N LI      ++   AL  F  +LD  + P +FTL  V    +   
Sbjct: 151 VFDRISER-NQVSWNSLISSLCSFEKWEMALEAFRCMLDEDVEPSSFTLVSVALACSNFP 209

Query: 137 ---AIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
               +  GKQ+H    + G   + F++++LV+MY K G++   + +  + + +DLV+WN 
Sbjct: 210 MPEGLLMGKQVHAYGLRKG-ELNSFIINTLVAMYGKMGKLASSKVLLGSFEGRDLVTWNT 268

Query: 194 LIDGYVKKGEVEVAMKLFDEM----PDRDLFSWTCLVDGFSKCGKVEIAREIF-YRMPN- 247
           ++    +  +   A++   EM     + D F+ + ++   S    +   +E+  Y + N 
Sbjct: 269 VLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHAYALKNG 328

Query: 248 ---RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALEL- 303
               N    +A+++ Y     V S C +FD M  R +  WN+MI GY  N    EAL L 
Sbjct: 329 SLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLF 388

Query: 304 LETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSK 363
           +E      +L N  T+   + A       +K   +H ++VK G   D  +   L+ MYS+
Sbjct: 389 IEMEESAGLLANSTTMAGVVPACVRSGAFSKKEAIHGFVVKRGLDRDRFVQNALMDMYSR 448

Query: 364 CGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKM-----------CRMG 412
            G I+ A  +F  +  + +  W  +I G         AL + +KM            R+ 
Sbjct: 449 LGKIDIAKRIFGKMEDRDLVTWNTIITGYVFSERHEDALLMLHKMQILERKASERASRVS 508

Query: 413 MKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEA 472
           +KP +IT + +L +C+    +  G+      I +  +   +     LVD+  + G L+ +
Sbjct: 509 LKPNSITLMTILPSCAALSALAKGKEIHAYAIKN-NLATDVAVGSALVDMYAKCGCLQMS 567

Query: 473 KSTIESMPMRPNFVIWMSLLSGARNHGN 500
           +   + +P+R N + W  ++     HGN
Sbjct: 568 RKVFDQIPIR-NVITWNVIVMAYGMHGN 594



 Score = 41.6 bits (96), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/107 (22%), Positives = 54/107 (50%), Gaps = 3/107 (2%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +++HA ++K NL     + S L+ +Y       L  +R +FD+I    +++ +N+++  Y
Sbjct: 533 KEIHAYAIKNNLATDVAVGSALVDMYA--KCGCLQMSRKVFDQIPIR-NVITWNVIVMAY 589

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQI 144
             +  S +A+ +   ++ + + P+  T   V    +  G + EG +I
Sbjct: 590 GMHGNSQDAIDMLRMMMVQGVKPNEVTFISVFAACSHSGMVNEGLKI 636


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 250/662 (37%), Positives = 378/662 (57%), Gaps = 14/662 (2%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +Q+H   V+T        ++ L+ +Y    + ++  A ++F++ +    +V +N  I   
Sbjct: 225 RQVHGAVVRTGYEKDVFTANALVDMY--SKLGDIEMAATVFEK-MPAADVVSWNAFISGC 281

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
           V +   H AL L   +    L+P+ FTL  V+K  A  GA   G+QIHG + K    FD+
Sbjct: 282 VTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDE 341

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
           FV   LV MYAK G +D  R+VFD M  +DL+ WN LI G    G     + LF  M   
Sbjct: 342 FVAVGLVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKE 401

Query: 218 DL---FSWTCLVDGFSKCGKVEI---AREIFYRMPNRNLVSWNAMING----YMKAGDVD 267
            L    + T L          E     R++        L+S + +ING    Y K G +D
Sbjct: 402 GLDLDVNRTTLASVLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLD 461

Query: 268 SACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVA 327
            A ++F +    D+I+  +M+          +A++L   ML   + P+   L S L+A  
Sbjct: 462 YAIKVFKESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACT 521

Query: 328 GLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTA 387
            L+   +G+ +H++++K  F  D   G  L+  Y+KCGSIE A   F  + ++ +  W+A
Sbjct: 522 SLSAYEQGKQVHAHLIKRQFTSDVFAGNALVYAYAKCGSIEDADMAFSGLPERGIVSWSA 581

Query: 388 MIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDY 447
           MI GL  HG   +ALDLF++M   G+ P  IT   VL+AC+HAGLV+D ++YF  M   +
Sbjct: 582 MIGGLAQHGHGKRALDLFHRMLDEGVAPNHITLTSVLSACNHAGLVDDAKKYFESMKETF 641

Query: 448 GIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYA 507
           GI+ T EHY C++DIL R G LE+A   + +MP + N  +W +LL  +R H + ++G  A
Sbjct: 642 GIDRTEEHYACMIDILGRAGKLEDAMELVNNMPFQANAAVWGALLGASRVHRDPELGRMA 701

Query: 508 ANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHE 567
           A  L  + P+  G +V+L+N YA+AG WD++++VR++MK    +K+P  S +E +  +H 
Sbjct: 702 AEKLFTLEPEKSGTHVLLANTYASAGMWDEMAKVRKLMKDSNVKKEPAMSWVEIKDKVHT 761

Query: 568 FVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAI 627
           F+VGDKSHP T +I+ KL+E+ + +  AG+VP+  +V L   D+ EKE  L +HSERLA+
Sbjct: 762 FIVGDKSHPMTRDIYGKLAELGDLMNKAGYVPN-VEVDLHDVDRSEKELLLSHHSERLAV 820

Query: 628 AFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKD 687
           AF LI+  S +PIR+ KNLR+C DCH   K +S I +REII+RD +RFHHF NG+CSC D
Sbjct: 821 AFALISTPSGAPIRVKKNLRICRDCHVAFKYISKIVSREIIIRDINRFHHFTNGTCSCGD 880

Query: 688 FW 689
           +W
Sbjct: 881 YW 882



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 150/540 (27%), Positives = 254/540 (47%), Gaps = 28/540 (5%)

Query: 27  ILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQ--- 83
           +LK +   +   Q+HAL+V T L++   +++ L+++Y       +  AR +FD  +    
Sbjct: 109 VLKCAPDVRFGAQVHALAVATRLVHDVFVANALVAVY--GGFGMVDEARRMFDEYVGVGG 166

Query: 84  HPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQ 143
             + V +N +I  YV N +S +A+ +F +++     P+ F   CV+        ++ G+Q
Sbjct: 167 ERNAVSWNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQ 226

Query: 144 IHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGE 203
           +HG V + G+  D F  ++LV MY+K G+I++   VF+ M   D+VSWN  I G V  G 
Sbjct: 227 VHGAVVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGH 286

Query: 204 VEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWN----- 254
              A++L  +M    L    F+ + ++   +  G   + R+I   M  + +  ++     
Sbjct: 287 DHRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMV-KAVADFDEFVAV 345

Query: 255 AMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIG--DV 312
            +++ Y K G +D A ++FD M  RDLI WN++I+G   +GR  E L L   M     D+
Sbjct: 346 GLVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDL 405

Query: 313 LPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALT 372
             N  TL S L + A    +   R +H+   K G + D  +   LI  Y KCG ++ A+ 
Sbjct: 406 DVNRTTLASVLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIK 465

Query: 373 VFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGL 432
           VF+      +   T M+  L        A+ LF +M R G++P +     +LNAC+    
Sbjct: 466 VFKESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSA 525

Query: 433 VNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLL 492
              G++    +I        +     LV    + G +E+A      +P R   V W +++
Sbjct: 526 YEQGKQVHAHLIKRQ-FTSDVFAGNALVYAYAKCGSIEDADMAFSGLPER-GIVSWSAMI 583

Query: 493 SGARNHGNKDIGEYAANNLIK-----VAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547
            G   HG+   G+ A +   +     VAP+ I    VLS     AG  D   +  E MK+
Sbjct: 584 GGLAQHGH---GKRALDLFHRMLDEGVAPNHITLTSVLSACN-HAGLVDDAKKYFESMKE 639



 Score =  178 bits (452), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 120/389 (30%), Positives = 202/389 (51%), Gaps = 24/389 (6%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYV 98
            LH+  +K+ L+  +G S+ LL+LY    + +   AR++FD I   P  V ++ L+  Y 
Sbjct: 25  HLHSHLLKSGLL--AGFSNHLLTLYSRCRLPSA--ARAVFDEI-PDPCHVSWSSLVTAYS 79

Query: 99  FNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKF 158
            N    +AL  F  +  R +  + F LP V+K A     ++ G Q+H L        D F
Sbjct: 80  NNGMPRDALLAFRAMRGRGVPCNEFALPVVLKCAPD---VRFGAQVHALAVATRLVHDVF 136

Query: 159 VLSSLVSMYAKFGEIDLGRRVFDAM----DDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
           V ++LV++Y  FG +D  RR+FD       +++ VSWN +I  YVK  +   A+ +F EM
Sbjct: 137 VANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFREM 196

Query: 215 ------PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMP----NRNLVSWNAMINGYMKAG 264
                 P+   F ++C+V+  +    +E  R++   +      +++ + NA+++ Y K G
Sbjct: 197 VWSGERPNE--FGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKLG 254

Query: 265 DVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS 324
           D++ A  +F+ M   D+++WN+ I+G   +G    ALELL  M    ++PN  TL S L 
Sbjct: 255 DIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLK 314

Query: 325 AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGH 384
           A AG    N GR +H ++VK     D  +   L+ MY+K G ++ A  VF  + ++ +  
Sbjct: 315 ACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLIL 374

Query: 385 WTAMIVGLGMHGMATQALDLFNKMCRMGM 413
           W A+I G    G   + L LF++M + G+
Sbjct: 375 WNALISGCSHDGRHGEVLSLFHRMRKEGL 403



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 112/382 (29%), Positives = 174/382 (45%), Gaps = 22/382 (5%)

Query: 133 ARLGAIKE---GKQIHGLVFKLGF--GFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD 187
           AR G  +    G  +H  + K G   GF     + L+++Y++       R VFD + D  
Sbjct: 12  ARFGTSRSLFAGAHLHSHLLKSGLLAGFS----NHLLTLYSRCRLPSAARAVFDEIPDPC 67

Query: 188 LVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKC------GKVEIAREI 241
            VSW+ L+  Y   G    A+  F  M  R +      +    KC      G    A  +
Sbjct: 68  HVSWSSLVTAYSNNGMPRDALLAFRAMRGRGVPCNEFALPVVLKCAPDVRFGAQVHALAV 127

Query: 242 FYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDM----EIRDLITWNSMIAGYELNGRF 297
             R+ +   V+ NA++  Y   G VD A  +FD+       R+ ++WN+MI+ Y  N + 
Sbjct: 128 ATRLVHDVFVA-NALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQS 186

Query: 298 MEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLL 357
            +A+ +   M+     PN+      ++A  G   L  GR +H  +V+ G+  D      L
Sbjct: 187 GDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANAL 246

Query: 358 IQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA 417
           + MYSK G IE A TVF  +    V  W A I G   HG   +AL+L  +M   G+ P  
Sbjct: 247 VDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNV 306

Query: 418 ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIE 477
            T   VL AC+ AG  N GR+    M+            G LVD+  + G+L++A+   +
Sbjct: 307 FTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVG-LVDMYAKHGFLDDARKVFD 365

Query: 478 SMPMRPNFVIWMSLLSGARNHG 499
            MP R + ++W +L+SG  + G
Sbjct: 366 FMPRR-DLILWNALISGCSHDG 386


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 257/668 (38%), Positives = 384/668 (57%), Gaps = 14/668 (2%)

Query: 31  SSTHKE-TQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVL 89
           +STHK    Q+H   V + L ++  + ++L++     ++  + YAR +FD    +P + +
Sbjct: 65  NSTHKRHLDQIHNRLVISGLQHNGFLMTKLVN--GSSNLGQICYARKLFDEFC-YPDVFM 121

Query: 90  YNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVF 149
           +N +I+ Y  N    + + ++  +    + PD FT P V+K    L        IHG + 
Sbjct: 122 WNAIIRSYSRNNMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIHGQII 181

Query: 150 KLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMK 209
           K GFG D FV + LV++YAK G I + + VFD +  + +VSW  +I GY + G+   A++
Sbjct: 182 KYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALR 241

Query: 210 LFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMING----YM 261
           +F +M +     D  +   ++  ++    +E  R I   +    L    A++      Y 
Sbjct: 242 MFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLISLTAFYA 301

Query: 262 KAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVS 321
           K G V  A   FD M+  ++I WN+MI+GY  NG   EA+ L   M+  ++ P+  T+ S
Sbjct: 302 KCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRS 361

Query: 322 ALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKK 381
           A+ A A +  L   +WM  Y+ K+ +  D  + T LI MY+KCGS+E A  VF   S K 
Sbjct: 362 AVLASAQVGSLELAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSVEFARRVFDRNSDKD 421

Query: 382 VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFN 441
           V  W+AMI+G G+HG   +A++L++ M + G+ P  +TFIG+L AC+H+GLV +G   F+
Sbjct: 422 VVMWSAMIMGYGLHGQGWEAINLYHVMKQAGVFPNDVTFIGLLTACNHSGLVKEGWELFH 481

Query: 442 MMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNK 501
            M  D+ I P  EHY C+VD+L R GYL EA + I  +P+ P   +W +LLS  + +   
Sbjct: 482 CM-KDFEIVPRNEHYSCVVDLLGRAGYLGEACAFIMKIPIEPGVSVWGALLSACKIYRCV 540

Query: 502 DIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEH 561
            +GEYAAN L  + P   G YV LSN+YA++  WD V+ VR +M+++G  KD G S IE 
Sbjct: 541 TLGEYAANKLFSLDPYNTGHYVQLSNLYASSCLWDCVAHVRVLMREKGLNKDLGYSVIEI 600

Query: 562 RGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENH 621
            G L  F VGDKSHP   EI  +L  +  +LK  G VP T  VL  + + +EKE  L  H
Sbjct: 601 NGKLQAFHVGDKSHPMAKEIFDELQRLERRLKEVGFVPYTESVLHDL-NYEEKEENLSFH 659

Query: 622 SERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNG 681
           SER+A+A+GLI+    + +RI KNLR C +CHS  KL+S +  REIIVRD +RFHHFK+G
Sbjct: 660 SERIAVAYGLISTAPGTTLRITKNLRACVNCHSAIKLISKLVEREIIVRDANRFHHFKDG 719

Query: 682 SCSCKDFW 689
            CSC D+W
Sbjct: 720 LCSCGDYW 727


>gi|296089786|emb|CBI39605.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 242/566 (42%), Positives = 339/566 (59%), Gaps = 31/566 (5%)

Query: 142 KQIHGLVFKLGFGFDKFVLSSLVSMYA-----KFGEIDLGRRVFDAMDDKDLVSWNCLID 196
           KQ H L+ + G   D ++  SLV  YA     ++   +   RVFD +   ++  WNC+I 
Sbjct: 72  KQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIK 131

Query: 197 GYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNL 250
             ++  E   A+ L+ EM      P++  +++  ++   S  G V    ++   +    L
Sbjct: 132 VCIENNEPFKAILLYYEMMVAHFRPNK--YTYPAVLKACSDAGVVAEGVQVHAHLVKHGL 189

Query: 251 VS----WNAMINGYMKAGDVDSACELFDDM--EIRDLITWNSMIAGYELNGRFMEALELL 304
                  ++ I  Y   G +  A  + DD   E+         +   +  G FMEALE+ 
Sbjct: 190 GGDGHILSSAIRMYASFGRLVEARRILDDKGGEV-------DAVCMPDRKGCFMEALEIF 242

Query: 305 ETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKC 364
             M    + P    L S LSA A L  L++GRW+H+Y  +N   +DGVLGT L+ MY+KC
Sbjct: 243 HQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKC 302

Query: 365 GSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVL 424
           G I+ A  VF  +S K+V  W AMI GL MHG A  A+DLF+KM    + P  ITF+GVL
Sbjct: 303 GRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM---DINPNEITFVGVL 359

Query: 425 NACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPN 484
           NAC+H GLV  G   FN M  +YG+EP IEHYGC+VD+L R G L EA+  + S+P  P 
Sbjct: 360 NACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPT 419

Query: 485 FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREM 544
             +W +LL   R HGN ++GE     L+++ P   G Y +LSNIYA AG+W++V EVR++
Sbjct: 420 PAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKL 479

Query: 545 MKKRGFRKDPGSSSIE-HRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQ 603
           MK+RG +  PG+S I+  RG +H+F++GD SHPQ  +I+  L +++ +L+  G+ PD +Q
Sbjct: 480 MKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYEPDPSQ 539

Query: 604 VLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIY 663
           VL  I D++EKE  +  HSE+LAI FGLIN    + IRIVKNLRVC DCHS TKL+S +Y
Sbjct: 540 VLFDI-DEEEKETAVWQHSEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSATKLISQVY 598

Query: 664 NREIIVRDNSRFHHFKNGSCSCKDFW 689
           NREIIVRD  R+HHF+NG+CSCKDFW
Sbjct: 599 NREIIVRDRIRYHHFRNGACSCKDFW 624



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 141/353 (39%), Gaps = 61/353 (17%)

Query: 36  ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIK 95
           E  Q+HA  VK  L     I S  + +Y       L  AR I D        V       
Sbjct: 176 EGVQVHAHLVKHGLGGDGHILSSAIRMYAS--FGRLVEARRILDDKGGEVDAVCMPDRKG 233

Query: 96  CYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF 155
           C++      EAL +F  +    + P  F LP V+   A LGA+ +G+ IH    +     
Sbjct: 234 CFM------EALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQL 287

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM- 214
           D  + +SLV MYAK G IDL   VF+ M +K++ SWN +I G    G  E A+ LF +M 
Sbjct: 288 DGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD 347

Query: 215 --PDRDLF----------------------------------SWTCLVDGFSKCGKVEIA 238
             P+   F                                   + C+VD   + G +  A
Sbjct: 348 INPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEA 407

Query: 239 REIFYRMPNRNLVS-WNAMINGYMKAGDV---DSACELFDDMEIRDLITWNSMIAGYELN 294
            ++   +P     + W A++    K G+V   +   ++  ++E ++   +  +   Y   
Sbjct: 408 EKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKA 467

Query: 295 GRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRW-MHSYIVKNG 346
           GR+ E  E+ + M               +    G ++++ GR  +H +I+ +G
Sbjct: 468 GRWEEVGEVRKLM-----------KERGIKTTPGTSIIDLGRGEVHKFIIGDG 509


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 254/694 (36%), Positives = 380/694 (54%), Gaps = 76/694 (10%)

Query: 70  NLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVI 129
           NL  AR +FD I Q P  V +  +I  Y        A+  F  ++   + P  FT   V+
Sbjct: 94  NLDSARRVFDEIPQ-PDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTNVL 152

Query: 130 KGAARLGAIKEGKQIHGLVFKLGFG-------------------------FDKFVL---- 160
              A   A+  GK++H  V KLG                           FD+  L    
Sbjct: 153 ASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKDTS 212

Query: 161 --SSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM---- 214
             ++++SM+ +F + DL   +FD M D D+VSWN +I GY  +G    A++ F  M    
Sbjct: 213 TWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSS 272

Query: 215 ---PDRDLFS---------------------------------WTCLVDGFSKCGKVEIA 238
              PD+                                        L+  ++K G VE+A
Sbjct: 273 SLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVA 332

Query: 239 REI--FYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGR 296
             I      P+ N++++ ++++GY K GD+D A  +FD ++ RD++ W +MI GY  NG 
Sbjct: 333 HRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGL 392

Query: 297 FMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTL 356
             +AL L   M+     PN+ TL + LS ++ LA L+ G+ +H+  ++   V    +G  
Sbjct: 393 ISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSVSVGNA 452

Query: 357 LIQMYSKCGSIESALTVFRAI-SKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKP 415
           LI MYS+ GSI+ A  +F  I S +    WT+MI+ L  HG+  +A++LF KM R+ +KP
Sbjct: 453 LITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKP 512

Query: 416 TAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKST 475
             IT++GVL+AC+H GLV  G+ YFN+M N + IEPT  HY C++D+L R G LEEA + 
Sbjct: 513 DHITYVGVLSACTHVGLVEQGKSYFNLMKNVHNIEPTSSHYACMIDLLGRAGLLEEAYNF 572

Query: 476 IESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQW 535
           I +MP+ P+ V W SLLS  R H   D+ + AA  L+ + P+  G Y+ L+N  +A G+W
Sbjct: 573 IRNMPIEPDVVAWGSLLSSCRVHKYVDLAKVAAEKLLLIDPNNSGAYLALANTLSACGKW 632

Query: 536 DKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAA 595
           +  ++VR+ MK +  +K+ G S ++ +  +H F V D  HPQ D I+  +S++  ++K  
Sbjct: 633 EDAAKVRKSMKDKAVKKEQGFSWVQIKNKVHIFGVEDALHPQRDAIYCMISKIWKEIKKM 692

Query: 596 GHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSV 655
           G +PDT  VL  +E Q+ KE  L +HSE+LAIAF LIN    + +RI+KNLRVCNDCHS 
Sbjct: 693 GFIPDTNSVLHDLE-QEVKEQILRHHSEKLAIAFALINTPKHTTVRIMKNLRVCNDCHSA 751

Query: 656 TKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            + +S +  REIIVRD +RFHHFK+GSCSC+D+W
Sbjct: 752 IRYISLLVEREIIVRDATRFHHFKDGSCSCQDYW 785



 Score =  155 bits (392), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 126/493 (25%), Positives = 201/493 (40%), Gaps = 108/493 (21%)

Query: 141 GKQIHGLVFKLGFGF-DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYV 199
           G+ IH  + K G  +   F+ ++L+++Y K G      R+FD M  K   SWN ++  + 
Sbjct: 31  GRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFDEMPLKTTFSWNTILSAHA 90

Query: 200 KKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSW------ 253
           K G ++ A ++FDE+P  D  SWT ++ G++  G  + A   F RM +  +         
Sbjct: 91  KAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTN 150

Query: 254 ---------------------------------NAMINGYMKAGD--------------- 265
                                            N+++N Y K GD               
Sbjct: 151 VLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKD 210

Query: 266 ----------------VDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLI 309
                            D A  LFD M   D+++WNS+I GY   G  + ALE    ML 
Sbjct: 211 TSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFMLK 270

Query: 310 GDVL-PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIE 368
              L P+  TL S LSA A    L  G+ +H++IV+    + G +G  LI MY+K G++E
Sbjct: 271 SSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVE 330

Query: 369 ---------------------------------SALTVFRAISKKKVGHWTAMIVGLGMH 395
                                             A  +F ++  + V  WTAMIVG   +
Sbjct: 331 VAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQN 390

Query: 396 GMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEH 455
           G+ + AL LF  M R G KP   T   VL+  S    ++ G++   + I    +  ++  
Sbjct: 391 GLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVS-SVSV 449

Query: 456 YGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNH--GNKDIGEYAANNLIK 513
              L+ +  R+G +++A+     +    + + W S++     H  GN+ I  +     I 
Sbjct: 450 GNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRIN 509

Query: 514 VAPDTIGCYVVLS 526
           + PD I    VLS
Sbjct: 510 LKPDHITYVGVLS 522


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 252/697 (36%), Positives = 395/697 (56%), Gaps = 45/697 (6%)

Query: 33  THKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNL 92
           +  + QQLHA  +K      S + +  L L +  HIN LH +  +F+ I   P+L  +  
Sbjct: 21  SRSQAQQLHAQVLK---FQASSLCNLSLLLSIYSHINLLHDSLRLFNTIHFPPALA-WKS 76

Query: 93  LIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLG 152
           +I+CY  +   H++L  F  +L   L PD+   P V+K  A L  +  G+ +HG + ++G
Sbjct: 77  VIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESLHGYIIRVG 136

Query: 153 FGFDKFVLSSLVSMYAKF-------------GEI-------------------DLGRRVF 180
             FD +  ++L++MY+K              GE+                   D  R++F
Sbjct: 137 LDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLSEDSVRKIF 196

Query: 181 DAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVE 236
           + M +KDLVSWN +I G  + G  E  +++  EM   +L    F+ + ++   ++   + 
Sbjct: 197 EMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVDIS 256

Query: 237 IAREI----FYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYE 292
             +EI      +  + ++   +++I+ Y K   V  +C +F  +  RD I+WNS+IAG  
Sbjct: 257 RGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCV 316

Query: 293 LNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV 352
            NG F E L     ML+  + P   +  S + A A L  L+ G+ +H YI +NGF  +  
Sbjct: 317 QNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIF 376

Query: 353 LGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG 412
           + + L+ MY+KCG+I +A  +F  +  + +  WTAMI+G  +HG A  A++LF +M   G
Sbjct: 377 IASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEG 436

Query: 413 MKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEA 472
           +KP  + F+ VL ACSH GLV++  +YFN M  D+GI P +EHY  + D+L R G LEEA
Sbjct: 437 IKPNHVAFMAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEA 496

Query: 473 KSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAA 532
              I  M + P   IW +LLS  R H N D+ E  AN +++V P+  G Y++L+NIY+AA
Sbjct: 497 YDFICGMHIGPTGSIWATLLSACRVHXNIDMAEKVANRILEVDPNNTGAYILLANIYSAA 556

Query: 533 GQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKL 592
            +W + ++ R  M++ G RK P  S IE +  ++ F+ GD+SHP  ++I   +  +   +
Sbjct: 557 RRWKEAAKWRASMRRIGIRKTPACSWIEVKNKVYAFMAGDESHPCYEKIREAMEVLVELM 616

Query: 593 KAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDC 652
           +  G+VPDT++V   +E++++K   + +HSERLAI FG+IN  +   IR+ KNLRVC DC
Sbjct: 617 EKEGYVPDTSEVHHDVEEEQKKYL-VCSHSERLAIVFGIINTPAGMTIRVTKNLRVCTDC 675

Query: 653 HSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           H+ TK +S I  REI+VRDNSRFHHFKNG+CSC D+W
Sbjct: 676 HTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDYW 712


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 238/630 (37%), Positives = 380/630 (60%), Gaps = 11/630 (1%)

Query: 68  INNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPC 127
           I  +  AR +FD  L    ++ +N +I  YV N  S + L LF  +L   +  D  T+  
Sbjct: 198 IRRVESARKLFDE-LGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVS 256

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD 187
           V+ G +  G +  G+ +HG   K  FG +  + + L+ MY+K G ++   +VF+ M ++ 
Sbjct: 257 VVAGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERS 316

Query: 188 LVSWNCLIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREIF- 242
           +VSW  +I GY ++G  +++++LF EM       D+F+ T ++   +  G +E  +++  
Sbjct: 317 VVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHN 376

Query: 243 YRMPNR---NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFME 299
           Y   N+   +L   NA+++ Y K G +  A  +F +M+++D+++WN+MI GY  N    E
Sbjct: 377 YIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNE 436

Query: 300 ALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQ 359
           AL L   M   +  PN  T+   L A A LA L +G+ +H +I++NGF +D  +   L+ 
Sbjct: 437 ALNLFVEMQY-NSKPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVD 495

Query: 360 MYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAIT 419
           MY KCG++  A  +F  I +K +  WT MI G GMHG  ++A+  FN+M   G++P  ++
Sbjct: 496 MYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVS 555

Query: 420 FIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM 479
           FI +L ACSH+GL+++G  +FNMM N+  IEP  EHY C+VD+L R G L +A   I+ M
Sbjct: 556 FISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMM 615

Query: 480 PMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVS 539
           P+ P+  IW +LL G R + +  + E  A ++ ++ P+  G YV+L+NIYA A +W++V 
Sbjct: 616 PIEPDATIWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVK 675

Query: 540 EVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVP 599
           ++RE + +RG RK+PG S IE +G +H FV GD SHP  ++I   L + R ++K  GH P
Sbjct: 676 KLRERIGRRGLRKNPGCSWIEIKGKVHIFVTGDSSHPLANKIELLLKKTRTRMKEEGHFP 735

Query: 600 DTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLL 659
                L+  +D  EKE  L  HSE++A+AFG++++     +R+ KNLRVC DCH + K +
Sbjct: 736 KMRYALIKADDT-EKEMALCGHSEKIAMAFGILSLPPGKTVRVTKNLRVCGDCHEMAKFM 794

Query: 660 SGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           S +  R+II+RD++RFHHFK+GSCSC+  W
Sbjct: 795 SKMVKRDIILRDSNRFHHFKDGSCSCRGHW 824



 Score =  172 bits (437), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 147/568 (25%), Positives = 248/568 (43%), Gaps = 97/568 (17%)

Query: 55  ISSRLLSLYVDP-----HINNLHYARS-IFDRILQHPSLVLYNLLIKCYVFNQRSHEALT 108
           IS    +L+V P       N+L Y    IF R      LV  NL   C         + T
Sbjct: 4   ISKTTPNLWVSPPHQIHRENSLTYPNGFIFFRPSSKTPLVSSNLYHSCATIGTSVLPSET 63

Query: 109 LFCDLLD------RFLLPDNF------------------TLPCVIKGAARLGAIKEGKQI 144
           + C + D      RF    N                   T   V++  A L +I++G++I
Sbjct: 64  IDCKITDYNIEICRFCELGNLRRAMELINQSPKPDLELRTYCSVLQLCADLKSIQDGRRI 123

Query: 145 HGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKG-- 202
           H ++       D  + S LV MY   G++  GRR+FD + ++ +  WN L++GY K G  
Sbjct: 124 HSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNF 183

Query: 203 ----------------EVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMP 246
                            VE A KLFDE+ DRD+ SW  ++ G+   G  E   ++F +M 
Sbjct: 184 RESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQML 243

Query: 247 ---------------------------------------NRNLVSWNAMINGYMKAGDVD 267
                                                   + L   N +++ Y K+G+++
Sbjct: 244 LLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLN 303

Query: 268 SACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVA 327
           SA ++F+ M  R +++W SMIAGY   G    ++ L   M    + P+  T+ + L A A
Sbjct: 304 SAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACA 363

Query: 328 GLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTA 387
              +L  G+ +H+YI +N    D  +   L+ MY+KCGS+  A +VF  +  K +  W  
Sbjct: 364 CTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNT 423

Query: 388 MIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR-YFNMMIND 446
           MI G   + +  +AL+LF +M +   KP +IT   +L AC+    +  G+  + +++ N 
Sbjct: 424 MIGGYSKNSLPNEALNLFVEM-QYNSKPNSITMACILPACASLAALERGQEIHGHILRNG 482

Query: 447 YGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEY 506
           + ++  + +   LVD+  + G L  A+   + +P + + V W  +++G   HG       
Sbjct: 483 FSLDRHVAN--ALVDMYLKCGALGLARLLFDMIPEK-DLVSWTVMIAGYGMHGYGSEAIA 539

Query: 507 AANNLIK--VAPDTIGCYVVLSNIYAAA 532
           A N +    + PD +     +S +YA +
Sbjct: 540 AFNEMRNSGIEPDEVS---FISILYACS 564



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 126/311 (40%), Gaps = 58/311 (18%)

Query: 295 GRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLG 354
           G    A+EL+      D+     T  S L   A L  +  GR +HS I  N   VDGVLG
Sbjct: 82  GNLRRAMELINQSPKPDL--ELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLG 139

Query: 355 TLLIQMYSKCGS------------------------------------------------ 366
           + L+ MY  CG                                                 
Sbjct: 140 SKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIR 199

Query: 367 -IESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN 425
            +ESA  +F  +  + V  W +MI G   +G++ + LDLF +M  +G+     T + V+ 
Sbjct: 200 RVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVA 259

Query: 426 ACSHAGLVNDGRRYFNMMIN-DYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPN 484
            CS+ G++  GR      I   +G E T+ +  CL+D+  ++G L  A    E+M  R +
Sbjct: 260 GCSNTGMLLLGRALHGYAIKASFGKELTLNN--CLLDMYSKSGNLNSAIQVFETMGER-S 316

Query: 485 FVIWMSLLSGARNHGNKDIGEYAANNLIK--VAPDTIGCYVVLSNIYAAAGQWDKVSEVR 542
            V W S+++G    G  D+     + + K  ++PD      +L +  A  G  +   +V 
Sbjct: 317 VVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTIL-HACACTGLLENGKDVH 375

Query: 543 EMMKKRGFRKD 553
             +K+   + D
Sbjct: 376 NYIKENKMQSD 386


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 245/661 (37%), Positives = 391/661 (59%), Gaps = 15/661 (2%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +++H L VK+         + L ++Y       +H AR +FDR+ +   LV +N ++  Y
Sbjct: 155 KEIHGLLVKSGFSLDLFAMTGLENMYAK--CRQVHEARKVFDRMPER-DLVSWNTIVAGY 211

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
             N  +  AL +   + +  L P   T+  V+   + L  I+ GK+IHG   + GF    
Sbjct: 212 SQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLV 271

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
            + ++LV MYAK G +   R +FD M ++++VSWN +ID YV+    + AM +F +M D 
Sbjct: 272 NIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDE 331

Query: 218 DLFSWTCLVDGF----SKCGKVEIAREIFYRMP-----NRNLVSWNAMINGYMKAGDVDS 268
            +      V G     +  G +E  R I +++      +RN+   N++I+ Y K  +VD+
Sbjct: 332 GVKPTDVSVMGALHACADLGDLERGRFI-HKLSVELELDRNVSVVNSLISMYCKCKEVDT 390

Query: 269 ACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAG 328
           A  +F  ++ R +++WN+MI G+  NGR +EAL     M    V P+  T VS ++A+A 
Sbjct: 391 AASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAE 450

Query: 329 LAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAM 388
           L++ +  +W+H  +++N    +  + T L+ MY+KCG+I  A  +F  +S++ V  W AM
Sbjct: 451 LSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAM 510

Query: 389 IVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYG 448
           I G G HG+   AL+LF +M +  ++P  +TF+ V++ACSH+GLV  G + F+MM  +Y 
Sbjct: 511 IDGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISACSHSGLVEAGLKCFHMMKENYS 570

Query: 449 IEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAA 508
           IEP+++HYG +VD+L R G L EA   I  MP++P   ++ ++L   + H N +  E  A
Sbjct: 571 IEPSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKVA 630

Query: 509 NNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEF 568
             L ++ P+  G +V+L+NIY AA  W+KV +VR  M ++G RK PG S +E +  +H F
Sbjct: 631 ERLFELNPEDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSF 690

Query: 569 VVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIA 628
             G  +HP + +I++ L ++  ++K AG+VPDT  +L   +D KE+   L +HSE+LAI+
Sbjct: 691 FSGSTAHPSSKKIYAFLEKLICQIKEAGYVPDTNLILGLEDDVKEQ--LLSSHSEKLAIS 748

Query: 629 FGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDF 688
           FGL+N  + + I + KNLRVC DCH+ TK +S +  REIIVRD  RFHHFKNG+CSC D+
Sbjct: 749 FGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIIVRDMQRFHHFKNGACSCGDY 808

Query: 689 W 689
           W
Sbjct: 809 W 809



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 134/536 (25%), Positives = 246/536 (45%), Gaps = 81/536 (15%)

Query: 9   SSPIHALQQ--HLPSRLHWN----ILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSL 62
           SS  H L Q  ++P+ ++ +    +L+  S+ KE + +  L  K  L       ++L+SL
Sbjct: 19  SSHRHFLSQRNYIPANVYEHPAALLLERCSSLKELRHILPLIFKNGLYQEHLFQTKLVSL 78

Query: 63  YVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDN 122
           +      ++  A  +F+ I +  + VLY  ++K +       +AL  F  + D  + P  
Sbjct: 79  FC--RYGSVDEAARVFEPIDKKLN-VLYYTMLKGFAKVSDLDKALKFFVRMRDDEVEPVV 135

Query: 123 FTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDA 182
           +    ++K       ++ GK+IHGL+ K GF  D F ++ L +MYAK  ++   R+VFD 
Sbjct: 136 YNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDR 195

Query: 183 MDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFS--------------------- 221
           M ++DLVSWN ++ GY + G   +A+++ + M + +L                       
Sbjct: 196 MPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIG 255

Query: 222 ------------------WTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKA 263
                              T LVD ++KCG ++ AR +F  M  RN+VSWN+MI+ Y++ 
Sbjct: 256 KEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQ- 314

Query: 264 GDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSAL 323
                                         N    EA+ + + ML   V P D +++ AL
Sbjct: 315 ------------------------------NENPKEAMVIFQKMLDEGVKPTDVSVMGAL 344

Query: 324 SAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVG 383
            A A L  L +GR++H   V+     +  +   LI MY KC  +++A ++F  +  + + 
Sbjct: 345 HACADLGDLERGRFIHKLSVELELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIV 404

Query: 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMM 443
            W AMI+G   +G   +AL+ F++M    +KP   T++ V+ A +   + +  +    ++
Sbjct: 405 SWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELSITHHAKWIHGVV 464

Query: 444 INDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
           + +  ++  +     LVD+  + G +  A+   + M  R +   W +++ G   HG
Sbjct: 465 MRN-CLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSER-HVTTWNAMIDGYGTHG 518


>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
 gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
          Length = 803

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 264/760 (34%), Positives = 399/760 (52%), Gaps = 109/760 (14%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINN--LHYARSIFDRI-LQHPSLVLYNLLI 94
           + +HA +VK  L+  + + + LLS Y    +     H AR +FD I     +   +N L+
Sbjct: 45  RAIHAHAVKAGLLVSAYLCNNLLSYYARAGVGRGCFHEARRLFDDIPYARRNAFTWNSLL 104

Query: 95  KCY-----------VFNQ--------------------RSHEALTLFCDLLDRFLLPDNF 123
             Y           VF Q                    R  +A+  F D++   L P  F
Sbjct: 105 SMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMVGEGLAPSQF 164

Query: 124 TLPCVIKGAARLGAIKEGKQIHGLVFKLGFG-------------------------FDKF 158
            L  V+   A   A   G+++H  V KLG                           F++ 
Sbjct: 165 MLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAETARAVFERM 224

Query: 159 VLSS------LVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFD 212
            + S      +VS+Y   G +DL   +F+ M+++ +VSWN +I GY + G  ++A+K F 
Sbjct: 225 KVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQNGLDDMALKFFS 284

Query: 213 EM-------PD--------------------RDLFSW-------------TCLVDGFSKC 232
            M       PD                    + + S+               L+  ++K 
Sbjct: 285 RMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQIMNALISTYAKS 344

Query: 233 GKVEIAREIFYR--MPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAG 290
           G VE AR I  +  + + N++S+ A++ GY+K GD   A E+FD M  RD+I W +MI G
Sbjct: 345 GSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVMNNRDVIAWTAMIVG 404

Query: 291 YELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVD 350
           YE NG+  EA+EL  +M+     PN  TL + LSA A LA L  G+ +H   +++     
Sbjct: 405 YEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASLAYLGYGKQIHCRAIRSLQEQS 464

Query: 351 GVLGTLLIQMYSKCGSIESALTVFRAIS-KKKVGHWTAMIVGLGMHGMATQALDLFNKMC 409
             +   +I +Y++ GS+  A  VF  I  +K+   WT+MIV L  HG+  QA+ LF +M 
Sbjct: 465 VSVSNAIITVYARSGSVPLARRVFDQICWRKETVTWTSMIVALAQHGLGEQAIVLFEEML 524

Query: 410 RMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYL 469
           R+G+KP  +T+IGV +AC+HAG ++ G+RY+  M+N++GI P + HY C+VD+L R G L
Sbjct: 525 RVGVKPDRVTYIGVFSACTHAGFIDKGKRYYEQMLNEHGIVPEMSHYACMVDLLARAGLL 584

Query: 470 EEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIY 529
            EA   I+ MP+ P+ V+W SLL+  R   N D+ E AA  L+ + PD  G Y  L+N+Y
Sbjct: 585 TEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAEKLLSIDPDNSGAYSALANVY 644

Query: 530 AAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMR 589
           +A G+W+  + + ++ K +  +K+ G S    +  +H F   D  HPQ D I  K +EM 
Sbjct: 645 SACGRWNDAARIWKLRKDKAVKKETGFSWTHVQSKVHVFGADDVLHPQRDAICKKAAEMW 704

Query: 590 NKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVC 649
            ++K AG VPD   VL  ++D+  KE  L  HSE+LAIAFGLI+   ++ +RI+KNLRVC
Sbjct: 705 EEIKKAGFVPDLNSVLHDVDDEL-KEELLSRHSEKLAIAFGLISTPEKTTLRIMKNLRVC 763

Query: 650 NDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           NDCH+  K +S + +REIIVRD +RFHHF++G CSCKD+W
Sbjct: 764 NDCHTAIKFISKVVDREIIVRDATRFHHFRDGYCSCKDYW 803



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 130/520 (25%), Positives = 212/520 (40%), Gaps = 120/520 (23%)

Query: 141 GKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGE----IDLGRRVFDAMD--DKDLVSWNCL 194
           G+ IH    K G     ++ ++L+S YA+ G         RR+FD +    ++  +WN L
Sbjct: 44  GRAIHAHAVKAGLLVSAYLCNNLLSYYARAGVGRGCFHEARRLFDDIPYARRNAFTWNSL 103

Query: 195 IDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS-- 252
           +  Y K G +  A  +F +MP+RD  SWT +V G ++ G+   A + F  M    L    
Sbjct: 104 LSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMVGEGLAPSQ 163

Query: 253 -------------------------------------WNAMINGYMKAGDVDSACELF-- 273
                                                 N+++  Y K GD ++A  +F  
Sbjct: 164 FMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAETARAVFER 223

Query: 274 -----------------------------DDMEIRDLITWNSMIAGYELNGRFMEALELL 304
                                        ++ME R +++WN++IAGY  NG    AL+  
Sbjct: 224 MKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQNGLDDMALKFF 283

Query: 305 ETMLIGDVL-PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSK 363
             ML    + P++ T+ S LSA A L +L  G+ MHSYI++ G      +   LI  Y+K
Sbjct: 284 SRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQIMNALISTYAK 343

Query: 364 CGSIES---------------------------------ALTVFRAISKKKVGHWTAMIV 390
            GS+E+                                 A  VF  ++ + V  WTAMIV
Sbjct: 344 SGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVMNNRDVIAWTAMIV 403

Query: 391 GLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIE 450
           G   +G   +A++LF  M R G +P + T   VL+AC+    +  G++     I     E
Sbjct: 404 GYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASLAYLGYGKQIHCRAIRSLQ-E 462

Query: 451 PTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAA-- 508
            ++     ++ +  R+G +  A+   + +  R   V W S++     HG   +GE A   
Sbjct: 463 QSVSVSNAIITVYARSGSVPLARRVFDQICWRKETVTWTSMIVALAQHG---LGEQAIVL 519

Query: 509 -NNLIKVA--PDTIGCYVVLSNIYAAAGQWDKVSEVREMM 545
              +++V   PD +  Y+ + +    AG  DK     E M
Sbjct: 520 FEEMLRVGVKPDRV-TYIGVFSACTHAGFIDKGKRYYEQM 558


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 240/647 (37%), Positives = 384/647 (59%), Gaps = 15/647 (2%)

Query: 55  ISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL 114
           +   L+ ++V     +L  A  +FD++ +  +LV + L+I  +     + +A+ LF D+ 
Sbjct: 184 VGCELIDMFVKGS-GDLGSAYKVFDKMPER-NLVTWTLMITRFAQLGCARDAIDLFLDME 241

Query: 115 DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKF---G 171
               +PD FT   V+     LG +  GKQ+H  V +LG   D  V  SLV MYAK    G
Sbjct: 242 LSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADG 301

Query: 172 EIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEV-AMKLFDEMPDRDL----FSWTCLV 226
            +D  R+VF+ M + +++SW  +I  YV+ GE +  A++LF +M    +    FS++ ++
Sbjct: 302 SVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVL 361

Query: 227 DGFSKCGKVEIAREIFYRMPNRNLVS----WNAMINGYMKAGDVDSACELFDDMEIRDLI 282
                        +++       + S     N++I+ Y ++G ++ A + FD +  ++L+
Sbjct: 362 KACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLV 421

Query: 283 TWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYI 342
           ++N+++ GY  N +  EA  L   +    +  +  T  S LS  A +  + KG  +H  +
Sbjct: 422 SYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRL 481

Query: 343 VKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQAL 402
           +K G+  +  +   LI MYS+CG+IE+A  VF  +  + V  WT+MI G   HG AT+AL
Sbjct: 482 LKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRAL 541

Query: 403 DLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDI 462
           ++F+KM   G KP  IT++ VL+ACSH G++++G+++FN M  ++GI P +EHY C+VD+
Sbjct: 542 EMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDL 601

Query: 463 LCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCY 522
           L R+G L EA   I SMP+  + ++W +LL   R HGN ++G +AA  +++  PD    Y
Sbjct: 602 LGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAY 661

Query: 523 VVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIH 582
           ++LSN++A+AGQW  V ++R+ MK+R   K+ G S IE    +H F VG+ SHPQ  +I+
Sbjct: 662 ILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIY 721

Query: 583 SKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRI 642
            +L ++ +K+K  G++PDT  VL  IE++ +KE  L  HSE++A+AFGLI+     PIRI
Sbjct: 722 QELDQLASKIKEMGYIPDTDFVLHDIEEE-QKEQFLFQHSEKIAVAFGLISTSQSKPIRI 780

Query: 643 VKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            KNLRVC DCH+  K +S    REI+VRD++RFHH KNG CSC D+W
Sbjct: 781 FKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 827



 Score =  148 bits (374), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 112/416 (26%), Positives = 198/416 (47%), Gaps = 26/416 (6%)

Query: 102 RSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLS 161
           R H A +    +  +   PD  T   ++K   R    + GK +H  + + G   D  VL+
Sbjct: 24  RLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLN 83

Query: 162 SLVSMYAKFGEIDLGRRVFDAMDDK-DLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLF 220
           +L+S+Y+K G+ +  R +F+ M +K DLVSW+ ++  +        A+  F +M +   +
Sbjct: 84  TLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFY 143

Query: 221 -SWTCLVDGFSKCGKVEIA--REIFYRMPNR------NLVSWNAMINGYMK-AGDVDSAC 270
            +  C       C     A   EI Y    +      ++     +I+ ++K +GD+ SA 
Sbjct: 144 PNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAY 203

Query: 271 ELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLA 330
           ++FD M  R+L+TW  MI  +   G   +A++L   M +   +P+  T  S LSA   L 
Sbjct: 204 KVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELG 263

Query: 331 VLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKC---GSIESALTVFRAISKKKVGHWTA 387
           +L  G+ +HS +++ G  +D  +G  L+ MY+KC   GS++ +  VF  + +  V  WTA
Sbjct: 264 LLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTA 323

Query: 388 MIVGLGMHGMA-TQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIND 446
           +I      G    +A++LF KM    ++P   +F  VL AC      N    Y    +  
Sbjct: 324 IITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACG-----NLSDPYTGEQVYS 378

Query: 447 YGIEPTIEHYGC----LVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG-ARN 497
           Y ++  I    C    L+ +  R+G +E+A+   + +    N V + +++ G A+N
Sbjct: 379 YAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDIL-FEKNLVSYNAIVDGYAKN 433



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 94/202 (46%), Gaps = 5/202 (2%)

Query: 295 GRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLG 354
           GR   A   L+ M   +  P+  T    L +         G+ +H  ++++G  +D V+ 
Sbjct: 23  GRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVL 82

Query: 355 TLLIQMYSKCGSIESALTVFRAI-SKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGM 413
             LI +YSKCG  E+A  +F  + +K+ +  W+AM+     + M  QA+  F  M  +G 
Sbjct: 83  NTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGF 142

Query: 414 KPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGC-LVDILCR-TGYLEE 471
            P    F  V+ ACS+A     G   +  ++    +E  +   GC L+D+  + +G L  
Sbjct: 143 YPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADV-CVGCELIDMFVKGSGDLGS 201

Query: 472 AKSTIESMPMRPNFVIWMSLLS 493
           A    + MP R N V W  +++
Sbjct: 202 AYKVFDKMPER-NLVTWTLMIT 222


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 244/622 (39%), Positives = 362/622 (58%), Gaps = 8/622 (1%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLP-DNFTLPCVIKGA 132
           AR +FDR+ +  + +L+N +I  Y  N+   E++ +F DL++      D  TL  ++   
Sbjct: 173 ARKVFDRMPEKDT-ILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAV 231

Query: 133 ARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWN 192
           A L  ++ G QIH L  K G     +VL+  +S+Y+K G+I +G  +F      D+V++N
Sbjct: 232 AELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYN 291

Query: 193 CLIDGYVKKGEVEVAMKLFDE-MPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLV 251
            +I GY   GE E+++ LF E M        + LV      G + +   I       N +
Sbjct: 292 AMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFL 351

Query: 252 SW----NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETM 307
           S      A+   Y K  +++SA +LFD+   + L +WN+MI+GY  NG   +A+ L   M
Sbjct: 352 SHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREM 411

Query: 308 LIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSI 367
              +  PN  T+   LSA A L  L+ G+W+H  +    F     + T LI MY+KCGSI
Sbjct: 412 QKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSI 471

Query: 368 ESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNAC 427
             A  +F  ++KK    W  MI G G+HG   +AL++F +M   G+ PT +TF+ VL AC
Sbjct: 472 AEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYAC 531

Query: 428 SHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVI 487
           SHAGLV +G   FN MI+ YG EP+++HY C+VDIL R G+L+ A   IE+M + P   +
Sbjct: 532 SHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSV 591

Query: 488 WMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547
           W +LL   R H + ++    +  L ++ PD +G +V+LSNI++A   + + + VR+  KK
Sbjct: 592 WETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKK 651

Query: 548 RGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLC 607
           R   K PG + IE     H F  GD+SHPQ  EI+ KL ++  K++ AG+ P+T   L  
Sbjct: 652 RKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHD 711

Query: 608 IEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREI 667
           +E++ E+E  ++ HSERLAIAFGLI  +  + IRI+KNLRVC DCH+VTKL+S I  R I
Sbjct: 712 VEEE-ERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVI 770

Query: 668 IVRDNSRFHHFKNGSCSCKDFW 689
           +VRD +RFHHFK+G CSC D+W
Sbjct: 771 VVRDANRFHHFKDGVCSCGDYW 792



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 137/529 (25%), Positives = 249/529 (47%), Gaps = 38/529 (7%)

Query: 68  INNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRF-LLPDNFTLP 126
           +  ++YAR IF  + Q P + L+N+L++ +  N+  H +L++F  L     L P++ T  
Sbjct: 65  LGAIYYARDIFLSV-QRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYA 123

Query: 127 CVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK 186
             I  A+     + G+ IHG     G   +  + S++V MY KF  ++  R+VFD M +K
Sbjct: 124 FAISAASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEK 183

Query: 187 DLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTC----------LVDGFSKCGKVE 236
           D + WN +I GY K      ++++F     RDL + +C          ++   ++  ++ 
Sbjct: 184 DTILWNTMISGYRKNEMYVESIQVF-----RDLINESCTRLDTTTLLDILPAVAELQELR 238

Query: 237 IAREIFYRMPNRNLVSWNAMING----YMKAGDVDSACELFDDMEIRDLITWNSMIAGYE 292
           +  +I          S + ++ G    Y K G +     LF +    D++ +N+MI GY 
Sbjct: 239 LGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYT 298

Query: 293 LNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV 352
            NG    +L L + +++       +TLVS L  V+G  +L     +H Y +K+ F+    
Sbjct: 299 SNGETELSLSLFKELMLSGARLRSSTLVS-LVPVSGHLMLIYA--IHGYCLKSNFLSHAS 355

Query: 353 LGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG 412
           + T L  +YSK   IESA  +F    +K +  W AMI G   +G+   A+ LF +M +  
Sbjct: 356 VSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSE 415

Query: 413 MKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEA 472
             P  +T   +L+AC+  G ++ G ++ + ++     E +I     L+ +  + G + EA
Sbjct: 416 FSPNPVTITCILSACAQLGALSLG-KWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEA 474

Query: 473 KSTIESMPMRPNFVIWMSLLSGARNHGNK----DIGEYAANNLIKVAPDTIGCYVVLSNI 528
           +   + M  + N V W +++SG   HG      +I     N+ I   P T  C +   + 
Sbjct: 475 RRLFDLM-TKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSH 533

Query: 529 YAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQ 577
                + D++     M+ + GF  +P   S++H   + + ++G   H Q
Sbjct: 534 AGLVKEGDEI--FNSMIHRYGF--EP---SVKHYACMVD-ILGRAGHLQ 574


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 240/647 (37%), Positives = 384/647 (59%), Gaps = 15/647 (2%)

Query: 55  ISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL 114
           +   L+ ++V     +L  A  +FD++ +  +LV + L+I  +     + +A+ LF D+ 
Sbjct: 166 VGCELIDMFVKGS-GDLGSAYKVFDKMPER-NLVTWTLMITRFAQLGCARDAIDLFLDME 223

Query: 115 DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKF---G 171
               +PD FT   V+     LG +  GKQ+H  V +LG   D  V  SLV MYAK    G
Sbjct: 224 LSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADG 283

Query: 172 EIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEV-AMKLFDEMPDRDL----FSWTCLV 226
            +D  R+VF+ M + +++SW  +I  YV+ GE +  A++LF +M    +    FS++ ++
Sbjct: 284 SVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVL 343

Query: 227 DGFSKCGKVEIAREIFYRMPNRNLVS----WNAMINGYMKAGDVDSACELFDDMEIRDLI 282
                        +++       + S     N++I+ Y ++G ++ A + FD +  ++L+
Sbjct: 344 KACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLV 403

Query: 283 TWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYI 342
           ++N+++ GY  N +  EA  L   +    +  +  T  S LS  A +  + KG  +H  +
Sbjct: 404 SYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRL 463

Query: 343 VKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQAL 402
           +K G+  +  +   LI MYS+CG+IE+A  VF  +  + V  WT+MI G   HG AT+AL
Sbjct: 464 LKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRAL 523

Query: 403 DLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDI 462
           ++F+KM   G KP  IT++ VL+ACSH G++++G+++FN M  ++GI P +EHY C+VD+
Sbjct: 524 EMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDL 583

Query: 463 LCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCY 522
           L R+G L EA   I SMP+  + ++W +LL   R HGN ++G +AA  +++  PD    Y
Sbjct: 584 LGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAY 643

Query: 523 VVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIH 582
           ++LSN++A+AGQW  V ++R+ MK+R   K+ G S IE    +H F VG+ SHPQ  +I+
Sbjct: 644 ILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIY 703

Query: 583 SKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRI 642
            +L ++ +K+K  G++PDT  VL  IE++ +KE  L  HSE++A+AFGLI+     PIRI
Sbjct: 704 QELDQLASKIKEMGYIPDTDFVLHDIEEE-QKEQFLFQHSEKIAVAFGLISTSQSKPIRI 762

Query: 643 VKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            KNLRVC DCH+  K +S    REI+VRD++RFHH KNG CSC D+W
Sbjct: 763 FKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 809



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 112/416 (26%), Positives = 198/416 (47%), Gaps = 26/416 (6%)

Query: 102 RSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLS 161
           R H A +    +  +   PD  T   ++K   R    + GK +H  + + G   D  VL+
Sbjct: 6   RLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLN 65

Query: 162 SLVSMYAKFGEIDLGRRVFDAMDDK-DLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLF 220
           +L+S+Y+K G+ +  R +F+ M +K DLVSW+ ++  +        A+  F +M +   +
Sbjct: 66  TLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFY 125

Query: 221 -SWTCLVDGFSKCGKVEIA--REIFYRMPNR------NLVSWNAMINGYMK-AGDVDSAC 270
            +  C       C     A   EI Y    +      ++     +I+ ++K +GD+ SA 
Sbjct: 126 PNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAY 185

Query: 271 ELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLA 330
           ++FD M  R+L+TW  MI  +   G   +A++L   M +   +P+  T  S LSA   L 
Sbjct: 186 KVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELG 245

Query: 331 VLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKC---GSIESALTVFRAISKKKVGHWTA 387
           +L  G+ +HS +++ G  +D  +G  L+ MY+KC   GS++ +  VF  + +  V  WTA
Sbjct: 246 LLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTA 305

Query: 388 MIVGLGMHGMA-TQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIND 446
           +I      G    +A++LF KM    ++P   +F  VL AC      N    Y    +  
Sbjct: 306 IITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACG-----NLSDPYTGEQVYS 360

Query: 447 YGIEPTIEHYGC----LVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG-ARN 497
           Y ++  I    C    L+ +  R+G +E+A+   + +    N V + +++ G A+N
Sbjct: 361 YAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDIL-FEKNLVSYNAIVDGYAKN 415



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 94/202 (46%), Gaps = 5/202 (2%)

Query: 295 GRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLG 354
           GR   A   L+ M   +  P+  T    L +         G+ +H  ++++G  +D V+ 
Sbjct: 5   GRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVL 64

Query: 355 TLLIQMYSKCGSIESALTVFRAI-SKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGM 413
             LI +YSKCG  E+A  +F  + +K+ +  W+AM+     + M  QA+  F  M  +G 
Sbjct: 65  NTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGF 124

Query: 414 KPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGC-LVDILCR-TGYLEE 471
            P    F  V+ ACS+A     G   +  ++    +E  +   GC L+D+  + +G L  
Sbjct: 125 YPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADV-CVGCELIDMFVKGSGDLGS 183

Query: 472 AKSTIESMPMRPNFVIWMSLLS 493
           A    + MP R N V W  +++
Sbjct: 184 AYKVFDKMPER-NLVTWTLMIT 204


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 249/660 (37%), Positives = 386/660 (58%), Gaps = 16/660 (2%)

Query: 40  LHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVF 99
           +H +  K  L     + + L+ +YV      +  AR +FD+ +Q   LV + ++I  Y  
Sbjct: 52  IHHIVYKFGLDLDHFVCAALVDMYV--KCREIEDARFLFDK-MQERDLVTWTVMIGGYAE 108

Query: 100 NQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFV 159
             +++E+L LF  + +  ++PD   +  V+   A+LGA+ + + I   + +  F  D  +
Sbjct: 109 CGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVIL 168

Query: 160 LSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM----- 214
            ++++ MYAK G ++  R +FD M++K+++SW+ +I  Y   G+   A+ LF  M     
Sbjct: 169 GTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGM 228

Query: 215 -PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNL----VSWNAMINGYMKAGDVDSA 269
            PD+   +   L+   S    +++ R I + +    L        A+++ Y K  +++ A
Sbjct: 229 LPDK--ITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDA 286

Query: 270 CELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGL 329
             LFD M  RDL+TW  MI GY   G   E+L L + M    V+P+   +V+ + A A L
Sbjct: 287 RFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKL 346

Query: 330 AVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMI 389
             ++K R +  YI +  F +D +LGT +I M++KCG +ESA  +F  + +K V  W+AMI
Sbjct: 347 GAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMI 406

Query: 390 VGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGI 449
              G HG   +ALDLF  M R G+ P  IT + +L ACSHAGLV +G R+F++M  DY +
Sbjct: 407 AAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSV 466

Query: 450 EPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAAN 509
              ++HY C+VD+L R G L+EA   IESM +  +  +W + L   R H +  + E AA 
Sbjct: 467 RADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAAT 526

Query: 510 NLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFV 569
           +L+++ P   G Y++LSNIYA AG+W+ V++ R++M +R  +K PG + IE     H+F 
Sbjct: 527 SLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFS 586

Query: 570 VGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAF 629
           VGD +HP++ EI+  L  + NKL+  G+VPDT  VL  + D++ K   L +HSE+LAIAF
Sbjct: 587 VGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDV-DEELKIGILYSHSEKLAIAF 645

Query: 630 GLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           GLI     +PIRI+KNLRVC DCH+  KL+S I  R IIVRD +RFHHFK G+CSC D+W
Sbjct: 646 GLIATPEHTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRDANRFHHFKEGACSCGDYW 705



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 128/424 (30%), Positives = 200/424 (47%), Gaps = 80/424 (18%)

Query: 120 PDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRV 179
           PDN+TLP VI+    L  ++ G+ IH +V+K G   D FV ++LV MY K  EI+  R +
Sbjct: 28  PDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFL 87

Query: 180 FDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDR---------------- 217
           FD M ++DLV+W  +I GY + G+   ++ LF++M      PD+                
Sbjct: 88  FDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAM 147

Query: 218 -----------------DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGY 260
                            D+   T ++D ++KCG VE AREIF RM  +N++SW+AMI  Y
Sbjct: 148 HKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAY 207

Query: 261 MKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLV 320
                                        GY   GR  +AL+L   ML   +LP+  TL 
Sbjct: 208 -----------------------------GYHGQGR--KALDLFRMMLSSGMLPDKITLA 236

Query: 321 SALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKK 380
           S L A + L  L  GR +H  + K G  +D  +   L+ MY KC  IE A  +F  + ++
Sbjct: 237 SLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPER 296

Query: 381 KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYF 440
            +  WT MI G    G A ++L LF+KM   G+ P  +  + V+ AC+  G ++  R   
Sbjct: 297 DLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKAR--- 353

Query: 441 NMMINDY----GIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGAR 496
              I+DY      +  +     ++D+  + G +E A+   + M  + N + W ++++   
Sbjct: 354 --TIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEK-NVISWSAMIAAYG 410

Query: 497 NHGN 500
            HG 
Sbjct: 411 YHGQ 414



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 100/218 (45%), Gaps = 10/218 (4%)

Query: 287 MIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNG 346
           M+ G+   G ++        ++     P++ TL   + A   L  L  GR +H  + K G
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60

Query: 347 FVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFN 406
             +D  +   L+ MY KC  IE A  +F  + ++ +  WT MI G    G A ++L LF 
Sbjct: 61  LDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFE 120

Query: 407 KMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDY----GIEPTIEHYGCLVDI 462
           KM   G+ P  +  + V+ AC+  G ++  R     +I+DY      +  +     ++D+
Sbjct: 121 KMREEGVVPDKVAMVTVVFACAKLGAMHKAR-----IIDDYIQRKKFQLDVILGTAMIDM 175

Query: 463 LCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGN 500
             + G +E A+   + M  + N + W ++++    HG 
Sbjct: 176 YAKCGCVESAREIFDRMEEK-NVISWSAMIAAYGYHGQ 212


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 254/670 (37%), Positives = 374/670 (55%), Gaps = 36/670 (5%)

Query: 40  LHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVF 99
           LHA +V      +  ++S L+ LY     + + YAR +FD++    + VL+N +I   V 
Sbjct: 125 LHAHAVVDGFDSNLFVASALVDLYCK--FSRVAYARKVFDKMPDRDT-VLWNTMITGLVR 181

Query: 100 NQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFV 159
           N    +++ +F D++ + +  D+ T+  V+   A +  +K G  I  L  KLGF FD +V
Sbjct: 182 NCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYV 241

Query: 160 LSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM----- 214
           L+ L+S+++K  ++D  R +F  +   DLVS+N LI G+   GE E A+K F E+     
Sbjct: 242 LTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQ 301

Query: 215 -----------PDRDLFS---WTCLVDGFS-KCGKVEIAREIFYRMPNRNLVSWNAMING 259
                      P    F      C + GF  K G +          P+ +     A+   
Sbjct: 302 RVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTI--------LQPSVS----TALTTI 349

Query: 260 YMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATL 319
           Y +  ++D A +LFD+   + +  WN+MI+GY  +G    A+ L + M+  +  PN  T+
Sbjct: 350 YSRLNEIDLARQLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTI 409

Query: 320 VSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK 379
            S LSA A L  L+ G+ +H  I       +  + T LI MY+KCG+I  A  +F   S+
Sbjct: 410 TSILSACAQLGALSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTSE 469

Query: 380 KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRY 439
           K    W  MI G G+HG   +AL LFN+M  +G +P+++TF+ VL ACSHAGLV +G   
Sbjct: 470 KNTVTWNTMIFGYGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYACSHAGLVREGDEI 529

Query: 440 FNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
           F+ M+N Y IEP  EHY C+VDIL R G LE+A   I  MP+ P   +W +LL     H 
Sbjct: 530 FHAMVNKYRIEPLAEHYACMVDILGRAGQLEKALEFIRKMPVEPGPAVWGTLLGACMIHK 589

Query: 500 NKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSI 559
           + ++   A+  L ++ P  +G YV+LSNIY+    + K + VRE +KKR   K PG + I
Sbjct: 590 DTNLARVASERLFELDPGNVGYYVLLSNIYSVERNFPKAASVREAVKKRNLSKTPGCTLI 649

Query: 560 EHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELE 619
           E  G  H FV GD+SH QT  I++KL E+  K++  G+  +T   L  +E++ EKE    
Sbjct: 650 EVNGTPHVFVCGDRSHSQTTSIYAKLEELTGKMREMGYQSETVTALHDVEEE-EKELMFN 708

Query: 620 NHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFK 679
            HSE+LAIAFGLI  +  + IRI+KNLRVC DCH+ TK +S I  R I+VRD +RFHHFK
Sbjct: 709 VHSEKLAIAFGLITTEPGTEIRIIKNLRVCLDCHAATKFISKITERVIVVRDANRFHHFK 768

Query: 680 NGSCSCKDFW 689
           +G CSC D+W
Sbjct: 769 DGICSCGDYW 778



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 97/456 (21%), Positives = 185/456 (40%), Gaps = 61/456 (13%)

Query: 143 QIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKG 202
           + H  + + G+  D   ++ L       G     R +F ++   D+  +N LI G+    
Sbjct: 26  ETHAQLIRNGYQHDLATVTKLTQKLFDVGATRHARALFFSVPKPDIFLFNVLIKGFSFSP 85

Query: 203 EVEVAMKLFDEM-------PDRDLFSWTCLV---DGFSKCGKVEIAREIFYRMPNRNLVS 252
           +   ++  +  +       PD   +++       D    C       + F    + NL  
Sbjct: 86  DAS-SISFYTHLLKNTTLSPDNFTYAFAISASPDDNLGMCLHAHAVVDGF----DSNLFV 140

Query: 253 WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDV 312
            +A+++ Y K   V  A ++FD M  RD + WN+MI G   N  + +++++ + M+   V
Sbjct: 141 ASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRNCCYDDSVQVFKDMVAQGV 200

Query: 313 LPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALT 372
             +  T+ + L AVA +  +  G  +    +K GF  D  + T LI ++SKC  +++A  
Sbjct: 201 RLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVLTGLISVFSKCEDVDTARL 260

Query: 373 VFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN------- 425
           +F  I K  +  + A+I G   +G    A+  F ++   G + ++ T +G++        
Sbjct: 261 LFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLIPVSSPFGH 320

Query: 426 ---ACSHAGL-------------------------VNDGRRYFNMMINDYGIEPTIEHYG 457
              AC   G                          ++  R+ F     D   E T+  + 
Sbjct: 321 LHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQLF-----DESSEKTVAAWN 375

Query: 458 CLVDILCRTGYLEEAKSTIESM---PMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKV 514
            ++    ++G  E A S  + M      PN V   S+LS     G    G+ + + LIK 
Sbjct: 376 AMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGALSFGK-SVHQLIKS 434

Query: 515 APDTIGCYV--VLSNIYAAAGQWDKVSEVREMMKKR 548
                  YV   L ++YA  G   + S++ ++  ++
Sbjct: 435 KNLEQNIYVSTALIDMYAKCGNISEASQLFDLTSEK 470


>gi|356561762|ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g66520-like [Glycine max]
          Length = 622

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 226/477 (47%), Positives = 326/477 (68%), Gaps = 4/477 (0%)

Query: 216 DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDD 275
           + ++F    L+  + K G V  ++++F    +R+L SWN +I  Y+ +G++  A ELFD 
Sbjct: 147 ENNVFVVNALIGMYGKWGLVGESQKVFQWAVDRDLYSWNTLIAAYVGSGNMSLAKELFDG 206

Query: 276 MEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKG 335
           M  RD+++W+++IAGY   G FMEAL+    ML     PN+ TLVSAL+A + L  L++G
Sbjct: 207 MRERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQIGPKPNEYTLVSALAACSNLVALDQG 266

Query: 336 RWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVF-RAISKKKVGHWTAMIVGLGM 394
           +W+H+YI K    ++  L   +I MY+KCG IESA  VF     K+KV  W AMI G  M
Sbjct: 267 KWIHAYIGKGEIKMNERLLASIIDMYAKCGEIESASRVFFEHKVKQKVWLWNAMIGGFAM 326

Query: 395 HGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIE 454
           HGM  +A+++F +M    + P  +TFI +LNACSH  +V +G+ YF +M++DY I P IE
Sbjct: 327 HGMPNEAINVFEQMKVEKISPNKVTFIALLNACSHGYMVEEGKLYFRLMVSDYAITPEIE 386

Query: 455 HYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIK- 513
           HYGC+VD+L R+G L+EA+  I SMPM P+  IW +LL+  R + + + G Y    +IK 
Sbjct: 387 HYGCMVDLLSRSGLLKEAEDMISSMPMAPDVAIWGALLNACRIYKDMERG-YRIGRIIKG 445

Query: 514 VAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMK-KRGFRKDPGSSSIEHRGVLHEFVVGD 572
           + P+ IGC+V+LSNIY+ +G+W++   +RE  +  R  +K PG SSIE +G  H+F+VGD
Sbjct: 446 MDPNHIGCHVLLSNIYSTSGRWNEARILREKNEISRDRKKIPGCSSIELKGTFHQFLVGD 505

Query: 573 KSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLI 632
           +SHPQ+ EI+S L EM  KLK+AG+VP+  ++L  I+D+++KE  L  HSE+LAIAFGL+
Sbjct: 506 QSHPQSREIYSFLDEMTTKLKSAGYVPELGELLHDIDDEEDKETALSVHSEKLAIAFGLM 565

Query: 633 NVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           N  + +PIRIVKNLRVC DCH  TK +S +YNR IIVRD +R+HHF++G CSCKD+W
Sbjct: 566 NTANGTPIRIVKNLRVCGDCHQATKFISKVYNRVIIVRDRTRYHHFEDGICSCKDYW 622



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 129/484 (26%), Positives = 227/484 (46%), Gaps = 87/484 (17%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           ++ +Q HA  + T LI H   +++LL L       +L YA  +FD+I Q P L +YN +I
Sbjct: 30  QQIKQTHAQLITTALISHPVSANKLLKLAA---CASLSYAHKLFDQIPQ-PDLFIYNTMI 85

Query: 95  KCYVFNQRS-HEALTLFCDLL-DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLG 152
           K +  +  S H +L +F  L  D  L P+ ++             ++EG+Q+     K+G
Sbjct: 86  KAHSLSPHSCHNSLIVFRSLTQDLGLFPNRYSFVFAFSACGNGLGVQEGEQVRIHAVKVG 145

Query: 153 FGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFD 212
              + FV+++L+ MY K+G +   ++VF    D+DL SWN LI  YV  G + +A +LFD
Sbjct: 146 LENNVFVVNALIGMYGKWGLVGESQKVFQWAVDRDLYSWNTLIAAYVGSGNMSLAKELFD 205

Query: 213 EMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM------PNR-----------NLVSWN- 254
            M +RD+ SW+ ++ G+ + G    A + F++M      PN            NLV+ + 
Sbjct: 206 GMRERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQIGPKPNEYTLVSALAACSNLVALDQ 265

Query: 255 ---------------------AMINGYMKAGDVDSACELFDDMEIRDLI-TWNSMIAGYE 292
                                ++I+ Y K G+++SA  +F + +++  +  WN+MI G+ 
Sbjct: 266 GKWIHAYIGKGEIKMNERLLASIIDMYAKCGEIESASRVFFEHKVKQKVWLWNAMIGGFA 325

Query: 293 LNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV 352
           ++G   EA+ + E M +  + PN  T ++ L+A +           H Y+V+ G      
Sbjct: 326 MHGMPNEAINVFEQMKVEKISPNKVTFIALLNACS-----------HGYMVEEG------ 368

Query: 353 LGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG 412
                 ++Y +    + A+T        ++ H+  M+  L   G+  +A D+ +    M 
Sbjct: 369 ------KLYFRLMVSDYAIT-------PEIEHYGCMVDLLSRSGLLKEAEDMISS---MP 412

Query: 413 MKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGC---LVDILCRTGYL 469
           M P    +  +LNAC    +  D  R + +     G++P   H GC   L +I   +G  
Sbjct: 413 MAPDVAIWGALLNACR---IYKDMERGYRIGRIIKGMDPN--HIGCHVLLSNIYSTSGRW 467

Query: 470 EEAK 473
            EA+
Sbjct: 468 NEAR 471


>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 241/590 (40%), Positives = 344/590 (58%), Gaps = 42/590 (7%)

Query: 140 EGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYV 199
           E KQ+H  + K         LS + S+ A        + +F  +D  ++  WN  +  + 
Sbjct: 30  ELKQLHAHLLKTNSPLSSLPLSRVASVCAFNSSFSYAKLIFQLLDASEVTHWNTCLRSFA 89

Query: 200 KKGEVEVAMKLF------DEMPDR---------------------------------DLF 220
           +      A+ LF      D  PD                                  ++F
Sbjct: 90  EGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMF 149

Query: 221 SWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRD 280
               +V  ++ CG++ +AR++F +MP R++++WN MI   +K GD + A +LF +M  R+
Sbjct: 150 LQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERN 209

Query: 281 LITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHS 340
           + +W SMI GY   G+  EA++L   M    +LPN+ T+V+ L A A +  L  GR +H 
Sbjct: 210 VRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHD 269

Query: 341 YIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQ 400
           +  ++G+  +  +   LI MY KCG +E A  +F  + ++ V  W+AMI GL  HG A  
Sbjct: 270 FSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAED 329

Query: 401 ALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLV 460
           AL LFNKM   G+KP A+TFIG+L+ACSH G+V  GR+YF  M  DYGI P IEHYGC+V
Sbjct: 330 ALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMV 389

Query: 461 DILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIG 520
           D+  R G L+EA   I +MP+ PN V+W +LL G + H N  + E A  +L K+ P   G
Sbjct: 390 DLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNIKLAEEATRHLSKLDPLNDG 449

Query: 521 CYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDE 580
            YVVLSNIYA AG+W+ V+ VR++M+ RG +K PG SSI   GV++ FV GD +HPQT+E
Sbjct: 450 YYVVLSNIYAEAGRWEDVARVRKLMRDRGVKKTPGWSSIMVEGVVYNFVAGDDTHPQTEE 509

Query: 581 IHSKLSEMRNKLKAAGHVPDTTQVLLCI-EDQKEKEAELENHSERLAIAFGLINVKSRSP 639
           I     ++  ++K  G+VP+T+ VLL + EDQKEK   L  HSE+LA+ FGLI     + 
Sbjct: 510 IFQTWEKLLQRMKLKGYVPNTSVVLLDMEEDQKEK--FLYRHSEKLAVVFGLIKTTPGTV 567

Query: 640 IRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           IRI+KNLRVC DCH+  K++S +  REI+VRD +RFH FKNGSCSC D+W
Sbjct: 568 IRIMKNLRVCEDCHAALKIISVVSTREIVVRDRNRFHCFKNGSCSCGDYW 617



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 144/493 (29%), Positives = 247/493 (50%), Gaps = 61/493 (12%)

Query: 5   TLQHSSPIHALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYV 64
           +L H SP+H    H PS    ++L   ++  E +QLHA  +KTN    S   SR+ S  V
Sbjct: 6   SLLHVSPLH----HRPST---HLLHNFTSPFELKQLHAHLLKTNSPLSSLPLSRVAS--V 56

Query: 65  DPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFT 124
               ++  YA+ IF ++L    +  +N  ++ +       +A++LF  L +  + PD++T
Sbjct: 57  CAFNSSFSYAKLIF-QLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYT 115

Query: 125 LPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD 184
              V+K  +RL  ++ GK +HG V KLG   + F+ + +V +YA  GEI + R+VFD M 
Sbjct: 116 CSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMP 175

Query: 185 DKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYR 244
            +D+++WN +I   VK G+ E A KLF EMP+R++ SWT ++ G+++CGK + A ++F  
Sbjct: 176 QRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLE 235

Query: 245 M------PN---------------------------------RNLVSWNAMINGYMKAGD 265
           M      PN                                 +N+   N +I+ Y+K G 
Sbjct: 236 MEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGC 295

Query: 266 VDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSA 325
           ++ AC +FD+ME R +++W++MIAG   +GR  +AL L   M+   V PN  T +  L A
Sbjct: 296 LEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHA 355

Query: 326 VAGLAVLNKGRWMHSYIVKNGFVVDGVLG-TLLIQMYSKCGSIESALTVFRAISKKKVG- 383
            + + ++ KGR   + + ++  +V  +     ++ ++S+ G ++ A      +     G 
Sbjct: 356 CSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGV 415

Query: 384 HWTAMIVGLGMH---GMATQALDLFNKMCRMGMKPTAITFIGVL-NACSHAGLVNDGRRY 439
            W A++ G  +H    +A +A    +K     + P    +  VL N  + AG   D  R 
Sbjct: 416 VWGALLGGCKVHKNIKLAEEATRHLSK-----LDPLNDGYYVVLSNIYAEAGRWEDVARV 470

Query: 440 FNMMINDYGIEPT 452
             +M  D G++ T
Sbjct: 471 RKLM-RDRGVKKT 482


>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 237/561 (42%), Positives = 339/561 (60%), Gaps = 33/561 (5%)

Query: 161 SSLVSMYAKF-GEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL 219
           ++++S Y K  G++     +FD + + D VS+N ++  Y++   VE A+  F++MP +D+
Sbjct: 108 NTMLSGYTKVAGKVKEAHELFDKIPEPDSVSYNIMLVCYLRSYGVEAALAFFNKMPVKDI 167

Query: 220 FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACEL------- 272
            SW  L+ GF++ G+++ A ++F  MP +N VSW+AMI+GY++ GD+++A EL       
Sbjct: 168 ASWNTLISGFAQNGQMQKAFDLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMK 227

Query: 273 ------------------------FDDMEIRDLITWNSMIAGYELNGRFMEALELLETML 308
                                   F  M +++L+TWNSMIAGY  N R  + L++ +TM+
Sbjct: 228 SVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMI 287

Query: 309 IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIE 368
              V PN  +L S L   + L+ L  GR MH  + K+    D    T LI MY KCG ++
Sbjct: 288 ESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLD 347

Query: 369 SALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACS 428
           SA  +F  + +K V  W AMI G   HG   +AL LF+KM    MKP  ITF+ V+ AC+
Sbjct: 348 SAWKLFLEMPRKDVISWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACN 407

Query: 429 HAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIW 488
           HAG V+ G +YF  M  ++GIE    HY C++D+L R G L+EA S I+ MP +P+  I+
Sbjct: 408 HAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFKPHAAIY 467

Query: 489 MSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548
            +LL   R H N D+ E+AA NL+ + P +   YV L+NIYAA  +WD+V++VR+MMK+ 
Sbjct: 468 GTLLGACRIHKNLDLAEFAARNLLNLDPTSATGYVQLANIYAATNKWDQVAKVRKMMKEH 527

Query: 549 GFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCI 608
              K PG S IE + V HEF   D+ HP+   IH KL+E+  K+K AG+VPD    L  +
Sbjct: 528 NVVKIPGYSWIEIKSVTHEFRSSDRLHPELTSIHKKLNELDGKMKLAGYVPDLEFALHDV 587

Query: 609 EDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREII 668
           E++  KE  L  HSE+LAIAFGL+     +PIR+ KNLRVC DCH   K +S I  REII
Sbjct: 588 EEE-HKEKLLLWHSEKLAIAFGLMKTAPGTPIRVFKNLRVCGDCHRAIKFISAIEKREII 646

Query: 669 VRDNSRFHHFKNGSCSCKDFW 689
           VRD +RFHHF+NG CSC D+W
Sbjct: 647 VRDTTRFHHFRNGFCSCGDYW 667



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 135/314 (42%), Gaps = 42/314 (13%)

Query: 218 DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMK-AGDVDSACELFD-- 274
           D+ S    +  F +   +E AR +F +M  R  V+WN M++GY K AG V  A ELFD  
Sbjct: 72  DVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKI 131

Query: 275 -----------------------------DMEIRDLITWNSMIAGYELNGRFMEALELLE 305
                                         M ++D+ +WN++I+G+  NG+  +A +L  
Sbjct: 132 PEPDSVSYNIMLVCYLRSYGVEAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFS 191

Query: 306 TMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCG 365
            M       N  +  + +S       L     ++  +     VV+    T ++  Y K G
Sbjct: 192 VM----PEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVE----TAMLTGYMKFG 243

Query: 366 SIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN 425
            +E A  +F+ ++ K +  W +MI G   +  A   L +F  M    ++P  ++   VL 
Sbjct: 244 KVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLL 303

Query: 426 ACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNF 485
            CS+   +  GR+  + +++   +         L+ + C+ G L+ A      MP R + 
Sbjct: 304 GCSNLSALPLGRQ-MHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMP-RKDV 361

Query: 486 VIWMSLLSGARNHG 499
           + W +++SG   HG
Sbjct: 362 ISWNAMISGYAQHG 375



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 110/215 (51%), Gaps = 10/215 (4%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           A  IF R+    +LV +N +I  YV N R+ + L +F  +++  + P+  +L  V+ G +
Sbjct: 248 AERIFQRMAVK-NLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCS 306

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
            L A+  G+Q+H LV K     D    +SL+SMY K G++D   ++F  M  KD++SWN 
Sbjct: 307 NLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVISWNA 366

Query: 194 LIDGYVKKGEVEVAMKLFDEMPD----RDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR- 248
           +I GY + G    A+ LFD+M +     D  ++  ++   +  G V++  + F  M    
Sbjct: 367 MISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEF 426

Query: 249 ----NLVSWNAMINGYMKAGDVDSACELFDDMEIR 279
                 V +  +I+   +AG +D A  L  +M  +
Sbjct: 427 GIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFK 461


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 248/693 (35%), Positives = 390/693 (56%), Gaps = 76/693 (10%)

Query: 71  LHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIK 130
           L  A  +FD I    S V +  +I  Y    R  +A+ +F D++   +LP  FTL  V+ 
Sbjct: 57  LEKAHQVFDLIPVRDS-VSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLA 115

Query: 131 GAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAM------- 183
             A  G+   GK++H  V KLG      V +SL++MYAK G++ + + VFD M       
Sbjct: 116 SCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSS 175

Query: 184 ------------------------DDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM----- 214
                                    ++D+VSWN +I G  + G    A++ F  +     
Sbjct: 176 WNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTS 235

Query: 215 --PDR----------------------------DLFSWT-----CLVDGFSKCGKVEIAR 239
             PDR                             +F  +      L+  ++K G VEIAR
Sbjct: 236 LKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIAR 295

Query: 240 EIFYR--MPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRF 297
            I  +  + + +++++ A++NGY+K GD+  A ++F+ ++  D++ W +MI GY  NG  
Sbjct: 296 RIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLN 355

Query: 298 MEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLL 357
            +A+E+ +TM+     PN  TL + LSA + +  LN G+ +H+  +++G  +   +G  L
Sbjct: 356 NDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNAL 415

Query: 358 IQMYSKCGSIESALTVFRAISKKK-VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT 416
             MY+K GSI  A  VF  + + +    WT+MI+ L  HG+  +A++LF +M  +G+KP 
Sbjct: 416 TTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPD 475

Query: 417 AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTI 476
            IT++GVL+AC+H GLV  GR YF++M N + I+PT+ HY C+VD+  R G L+EA   +
Sbjct: 476 HITYVGVLSACTHGGLVEQGRSYFDLMKNVHKIDPTLSHYACMVDLFGRAGLLQEAYKFV 535

Query: 477 ESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWD 536
           E+MPM P+ + W SLLS  + + N D+ + AA  L+ + P+  G Y  L+N+Y++ G+WD
Sbjct: 536 ENMPMEPDVIAWGSLLSSCKVYKNVDLAKVAAERLLLIEPNNSGAYSALANVYSSCGKWD 595

Query: 537 KVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAG 596
             +++R++MK RG +K+ G S ++ +   H F V D  HPQ DEI+  + ++  ++K  G
Sbjct: 596 DAAKIRKLMKARGVKKEQGLSWVQIQNKTHVFGVEDGLHPQKDEIYKMMDKIWKEIKKMG 655

Query: 597 HVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVT 656
             PDT  VL  +E +  K+  L  HSE+LAIAFG+I+    + +RI+KNLRVCNDCH+  
Sbjct: 656 FAPDTESVLHDLEVE-VKDQILRYHSEKLAIAFGIISTPENTTLRIMKNLRVCNDCHNAI 714

Query: 657 KLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           K +S + +REIIVRD +RFHHFK+GSCSCKD+W
Sbjct: 715 KFISKLVDREIIVRDATRFHHFKDGSCSCKDYW 747



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 128/487 (26%), Positives = 210/487 (43%), Gaps = 115/487 (23%)

Query: 150 KLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMK 209
           KLG  F  +++++L+++YAK G       +F+ M  K   SWN ++ GY K+G++E A +
Sbjct: 3   KLGLTFSVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQ 62

Query: 210 LFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM------PNRNLVS----------- 252
           +FD +P RD  SWT ++ G+++ G+ E A +IF  M      P +  ++           
Sbjct: 63  VFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGS 122

Query: 253 ----------------------WNAMINGYMKAGDVDSACELFDDMEI------------ 278
                                  N+++N Y K GD+  A  +FD M++            
Sbjct: 123 RGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISL 182

Query: 279 -------------------RDLITWNSMIAGYELNGRFMEALELLETMLIGDVL-PNDAT 318
                              RD+++WNSMIAG   +G   EAL+   ++L    L P+  +
Sbjct: 183 HMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFS 242

Query: 319 LVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIE---------- 368
           L SALSA A L  L+ G+ +H YIV+  F   G +G  LI MY+K G +E          
Sbjct: 243 LASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSG 302

Query: 369 -----------------------SALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLF 405
                                   A  +F ++    V  WTAMIVG   +G+   A+++F
Sbjct: 303 ISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVF 362

Query: 406 NKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMI-NDYGIEPTIEHYGCLVDILC 464
             M   G +P + T   +L+A S    +N G++     I +   + P++ +   L  +  
Sbjct: 363 KTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGN--ALTTMYA 420

Query: 465 RTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNL-----IKVAPDTI 519
           + G +  A+     +    + V W S++     HG   +GE A         + + PD I
Sbjct: 421 KAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHG---LGEEAIELFEQMLTLGIKPDHI 477

Query: 520 GCYVVLS 526
               VLS
Sbjct: 478 TYVGVLS 484



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 165/366 (45%), Gaps = 45/366 (12%)

Query: 225 LVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITW 284
           L++ ++K G    A ++F  MP +   SWN +++GY K G ++ A ++FD + +RD ++W
Sbjct: 16  LMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQVFDLIPVRDSVSW 75

Query: 285 NSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVK 344
            ++I GY   GRF +A+++   M+   VLP   TL + L++ A       G+ +HS++VK
Sbjct: 76  TTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRGIGKKVHSFVVK 135

Query: 345 NGFVVDGVLGTLLIQMYSK-------------------------------CGSIESALTV 373
            G      +   L+ MY+K                               CG ++ AL  
Sbjct: 136 LGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQ 195

Query: 374 FRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCR-MGMKPTAITFIGVLNACSHAGL 432
           F  +S++ +  W +MI G   HG   +AL  F+ + +   +KP   +    L+AC+    
Sbjct: 196 FELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACA---- 251

Query: 433 VNDGRRYFNMMINDYGIEPTIEHYG----CLVDILCRTGYLEEAKSTIESMPMRP-NFVI 487
            N  +  F   I+ Y +    +  G     L+ +  ++G +E A+  IE   +   + + 
Sbjct: 252 -NLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDLDVIA 310

Query: 488 WMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547
           + +LL+G    G+        N+L    PD +    ++   Y   G  +   EV + M  
Sbjct: 311 FTALLNGYVKLGDITPARQIFNSLKD--PDVVAWTAMIVG-YVQNGLNNDAIEVFKTMVS 367

Query: 548 RGFRKD 553
            G R +
Sbjct: 368 EGPRPN 373


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 258/666 (38%), Positives = 386/666 (57%), Gaps = 10/666 (1%)

Query: 31  SSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLY 90
           SS  K+   +HA  +K++   +  +++ L+++Y       +  A +IF   +     + +
Sbjct: 331 SSFIKQGMFIHATVLKSSYYINVFVANALIAMYA--RFGKMGEAANIFYN-MDDWDTISW 387

Query: 91  NLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFK 150
           N ++  +V N   HEAL  + ++ D    PD   +  +I  +AR G    G QIH    K
Sbjct: 388 NSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMK 447

Query: 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
            G   D  V +SLV MYAKF  +     +FD M DKD+VSW  +I G+ + G    A++L
Sbjct: 448 NGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALEL 507

Query: 211 FDEMP----DRDLFSWTCLVDGFSKCGKVEIAREI---FYRMPNRNLVSWNAMINGYMKA 263
           F E+     D D+   + ++   S    +   +EI     R    +LV  N +++ Y + 
Sbjct: 508 FREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLSDLVLQNGIVDVYGEC 567

Query: 264 GDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSAL 323
           G+VD A  +F+ +E +D+++W SMI+ Y  NG   EALEL   M    V P+  +LVS L
Sbjct: 568 GNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSIL 627

Query: 324 SAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVG 383
           SA A L+ L KG+ +H ++++ GFV++G L + L+ MY++CG++E +  VF  I  K + 
Sbjct: 628 SAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLV 687

Query: 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMM 443
            WT+MI   GMHG    A+DLF +M    + P  I F+ VL ACSH+GL+N+GRR+   M
Sbjct: 688 LWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESM 747

Query: 444 INDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDI 503
             +Y +EP  EHY CLVD+L R  +LEEA   ++ M + P   +W +LL   + H NK++
Sbjct: 748 KYEYQLEPWPEHYVCLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKEL 807

Query: 504 GEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRG 563
           GE AA  L+++ P+  G YV++SN+YAA  +W  V EVR  MK  G +K+PG S IE   
Sbjct: 808 GEIAAQKLLEMDPENPGNYVLVSNVYAAERRWKDVEEVRMRMKASGLKKNPGCSWIEVGN 867

Query: 564 VLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSE 623
            +H F+  DKSHPQ+ EI+SKLS++  KL   G     T+ +L    ++EK   L  HSE
Sbjct: 868 KVHTFMARDKSHPQSYEIYSKLSQITEKLAKEGGYVAQTKFVLHNAKEEEKVQMLYGHSE 927

Query: 624 RLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSC 683
           RLAIA+G++     + +RI KNLRVC DCH+  KL+S  + RE+++RD +RFHHFK G C
Sbjct: 928 RLAIAYGMLTTPEGASLRITKNLRVCGDCHNFCKLISKFFERELVMRDANRFHHFKGGVC 987

Query: 684 SCKDFW 689
           SC D W
Sbjct: 988 SCGDVW 993



 Score =  207 bits (527), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 141/502 (28%), Positives = 264/502 (52%), Gaps = 25/502 (4%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYV 98
           ++H L++K   +    +++ ++ +Y     N+L+ AR +FDR+ +   +V +N +I  Y 
Sbjct: 237 EVHGLAIKEGYVSIVFVANSIVGMYTK--CNDLNGARQLFDRMPEKEDVVSWNSMISAYS 294

Query: 99  FNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKF 158
            N +S EAL LF ++    L P+ +T    ++       IK+G  IH  V K  +  + F
Sbjct: 295 SNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVF 354

Query: 159 VLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR- 217
           V ++L++MYA+FG++     +F  MDD D +SWN ++ G+V+ G    A++ + EM D  
Sbjct: 355 VANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAG 414

Query: 218 ---DLFSWTCLVDGFSKCGKVEIAREIF-YRMPN---RNLVSWNAMINGYMKAGDVDSAC 270
              DL +   ++   ++ G      +I  Y M N    +L   N++++ Y K   +    
Sbjct: 415 QKPDLVAVISIIAASARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMD 474

Query: 271 ELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLA 330
            +FD M  +D+++W ++IAG+  NG    ALEL   + +  +  +   + S L A +GL 
Sbjct: 475 CIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLK 534

Query: 331 VLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIV 390
           +++  + +HSYI++ G + D VL   ++ +Y +CG+++ A  +F  I  K V  WT+MI 
Sbjct: 535 LISSVKEIHSYIIRKG-LSDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMIS 593

Query: 391 GLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIND-YGI 449
               +G+A +AL+LF+ M   G++P +I+ + +L+A +    +  G+     +I   + +
Sbjct: 594 CYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVL 653

Query: 450 EPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAAN 509
           E ++     LVD+  R G LE++++    +  + + V+W S+++    HG       AA 
Sbjct: 654 EGSLA--STLVDMYARCGTLEKSRNVFNFIRNK-DLVLWTSMINAYGMHGCGR----AAI 706

Query: 510 NLIK------VAPDTIGCYVVL 525
           +L +      +APD I    VL
Sbjct: 707 DLFRRMEDESIAPDHIAFVAVL 728



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 148/531 (27%), Positives = 258/531 (48%), Gaps = 27/531 (5%)

Query: 36  ETQQLHALSVKTNLIYHS-GISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           E QQ+HA  + +N +++S  +S+RL+ +Y       L  A  +FD  + H ++  +N +I
Sbjct: 132 EGQQVHAHMITSNALFNSVFLSTRLVFMY--GKCGCLVDAEKLFDG-MPHKTIFTWNAMI 188

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
             YV N     +L L+ ++    +  D  T PC++K    L   + G ++HGL  K G+ 
Sbjct: 189 GAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRCGAEVHGLAIKEGYV 248

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK-DLVSWNCLIDGYVKKGEVEVAMKLFDE 213
              FV +S+V MY K  +++  R++FD M +K D+VSWN +I  Y   G+   A++LF E
Sbjct: 249 SIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGE 308

Query: 214 MPDRDLFSWT---------CLVDGFSKCG---KVEIAREIFYRMPNRNLVSWNAMINGYM 261
           M    L   T         C    F K G      + +  +Y     N+   NA+I  Y 
Sbjct: 309 MQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYY----INVFVANALIAMYA 364

Query: 262 KAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVS 321
           + G +  A  +F +M+  D I+WNSM++G+  NG + EAL+    M      P+   ++S
Sbjct: 365 RFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVIS 424

Query: 322 ALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKK 381
            ++A A       G  +H+Y +KNG   D  +G  L+ MY+K  S++    +F  +  K 
Sbjct: 425 IIAASARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKD 484

Query: 382 VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFN 441
           V  WT +I G   +G  ++AL+LF ++   G+    +    +L ACS   L++  +   +
Sbjct: 485 VVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHS 544

Query: 442 MMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG-- 499
            +I   G+   +   G +VD+    G ++ A    E +  + + V W S++S   ++G  
Sbjct: 545 YIIRK-GLSDLVLQNG-IVDVYGECGNVDYAARMFELIEFK-DVVSWTSMISCYVHNGLA 601

Query: 500 NKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGF 550
           N+ +  +       V PD+I   V + +  A+     K  E+   + ++GF
Sbjct: 602 NEALELFHLMKETGVEPDSIS-LVSILSAAASLSALKKGKEIHGFLIRKGF 651


>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Brachypodium distachyon]
          Length = 892

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 260/667 (38%), Positives = 367/667 (55%), Gaps = 71/667 (10%)

Query: 26  NILKFSSTHKETQQLHALSVKTNLIYHS--GISSRLLSLYVDPHINNLHYARSIFDRILQ 83
           ++L   ST +   +LHA  ++T L+  +   ++ RL   Y      +L  A     R  +
Sbjct: 294 SLLTSCSTARRAAELHAAVLRTGLLDATDRAVAFRLQRAYAASGRLDLSLA---LLRRTR 350

Query: 84  HPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQ 143
            P+ + Y   I  +        AL L  D+L + LLP   TL   +  A R   +  G+ 
Sbjct: 351 DPTAIFYTSAIHAHSSRGHRLPALALLSDMLAQGLLPTAHTLSASLP-ACR--GLSPGRA 407

Query: 144 IHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGE 203
           +HG  FKL    D +V ++L+ M                               Y + G+
Sbjct: 408 LHGYAFKLALAGDSYVATALLGM-------------------------------YARAGD 436

Query: 204 VEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKA 263
              A  LFD+M                              +P+ ++VS  AM+  Y   
Sbjct: 437 ATAARALFDDM------------------------------LPDPHVVSVTAMLTCYADM 466

Query: 264 GDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSAL 323
           G +D A  LFD +  +D + WN+MI GY  +GR  EAL L   ML   V P++ T+V  L
Sbjct: 467 GALDDARSLFDGLPTKDFVCWNAMIDGYTQHGRPNEALRLFRRMLGSGVEPDEVTVVLVL 526

Query: 324 SAVAGLAVLNKGRWMHSYIVKNGFVVDGV-LGTLLIQMYSKCGSIESALTVFRAISKKKV 382
           SAVA L  +  G+W+HSY+  +  V   V +GT LI MY KCGS+  A+ VF  I  K +
Sbjct: 527 SAVAQLGTVESGKWLHSYVKNSRRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIGDKDI 586

Query: 383 GHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNM 442
             W AMI G  MHG + +AL++F +    G+ PT ITFIG+LNACSH+G+V +GR +F  
Sbjct: 587 VVWNAMINGYAMHGDSRKALEMFVQSREQGLWPTDITFIGLLNACSHSGMVEEGREFFQS 646

Query: 443 MINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKD 502
           M  +YGI+P IEHYGC+VD+L R G ++EA   ++SM + P+ V+W+SLL+  R H N  
Sbjct: 647 MEREYGIDPKIEHYGCMVDLLGRAGLIKEAFCLVQSMKITPDAVMWVSLLAACRLHKNMS 706

Query: 503 IGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHR 562
           +G+  A+ L+       G Y++LSNIYAA G W +V+ VR MMK  G +K+PG SSIE  
Sbjct: 707 LGQQIADYLVAKGLANSGMYILLSNIYAAVGNWGEVARVRSMMKASGIQKEPGCSSIEID 766

Query: 563 GVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHS 622
             ++EFV GD SHP+TDEI+  L +M   +K  GHVP T  VL  + D+  KE  L  HS
Sbjct: 767 REVYEFVAGDMSHPRTDEIYVMLDKMNGLVKEHGHVPQTELVLHDL-DEATKEKALAVHS 825

Query: 623 ERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGS 682
           E+LA+AFGLI+ +  + I+IVKNLR C+DCH+V KL+S I  R+I+ RD +RFHHF +GS
Sbjct: 826 EKLALAFGLISTQPGATIKIVKNLRACSDCHAVLKLISRITGRKIVFRDRNRFHHFVDGS 885

Query: 683 CSCKDFW 689
           CSC D+W
Sbjct: 886 CSCGDYW 892


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 260/674 (38%), Positives = 390/674 (57%), Gaps = 18/674 (2%)

Query: 26  NILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHP 85
           ++LK   T  +  ++H L++K   ++   +++ L+ LY       +  AR +FD  +   
Sbjct: 158 SVLKACRTVIDGNKIHCLALKFGFMWDVYVAASLIHLY--SRYKAVGNARILFDE-MPVR 214

Query: 86  SLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIH 145
            +  +N +I  Y  +  + EALTL   L       D+ T+  ++      G    G  IH
Sbjct: 215 DMGSWNAMISGYCQSGNAKEALTLSNGLRAM----DSVTVVSLLSACTEAGDFNRGVTIH 270

Query: 146 GLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVE 205
               K G   + FV + L+ +YA+FG +   ++VFD M  +DL+SWN +I  Y    +  
Sbjct: 271 SYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPL 330

Query: 206 VAMKLFDEMP----DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR-----NLVSWNAM 256
            A+ LF EM       D  +   L    S+ G +   R +      +     ++   NA+
Sbjct: 331 RAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAV 390

Query: 257 INGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLI-GDVLPN 315
           +  Y K G VDSA  +F+ +   D+I+WN++I+GY  NG   EA+E+   M   G++  N
Sbjct: 391 VVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAAN 450

Query: 316 DATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFR 375
             T VS L A +    L +G  +H  ++KNG  +D  + T L  MY KCG +E AL++F 
Sbjct: 451 QGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFY 510

Query: 376 AISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVND 435
            I +     W  +I   G HG   +A+ LF +M   G+KP  ITF+ +L+ACSH+GLV++
Sbjct: 511 QIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDE 570

Query: 436 GRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGA 495
           G+  F MM  DYGI P+++HYGC+VD+  R G LE A   I+SM ++P+  IW +LLS  
Sbjct: 571 GQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSAC 630

Query: 496 RNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPG 555
           R HGN D+G+ A+ +L +V P+ +G +V+LSN+YA+AG+W+ V E+R +   +G RK PG
Sbjct: 631 RVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPG 690

Query: 556 SSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKE 615
            SS+E    +  F  G+++HP  +E++ +L+ ++ KLK  G+VPD   VL  +ED  EKE
Sbjct: 691 WSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDD-EKE 749

Query: 616 AELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRF 675
             L +HSERLAIAF LI   +++ IRI KNLRVC DCHSVTK +S I  REIIVRD++RF
Sbjct: 750 HILMSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRF 809

Query: 676 HHFKNGSCSCKDFW 689
           HHFKNG CSC D+W
Sbjct: 810 HHFKNGVCSCGDYW 823



 Score =  211 bits (538), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 162/551 (29%), Positives = 282/551 (51%), Gaps = 26/551 (4%)

Query: 26  NILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHP 85
            + ++ +  +  + LHA  V +  I +  IS++L++LY   ++ N+  AR  FD I Q+ 
Sbjct: 59  TLFRYCTNLQSAKCLHARLVVSKQIQNVCISAKLVNLYC--YLGNVALARHTFDHI-QNR 115

Query: 86  SLVLYNLLIKCYVFNQRSHEALTLFC-DLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQI 144
            +  +NL+I  Y     S E +  F   +L   L PD  T P V+K A R   + +G +I
Sbjct: 116 DVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLK-ACR--TVIDGNKI 172

Query: 145 HGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEV 204
           H L  K GF +D +V +SL+ +Y+++  +   R +FD M  +D+ SWN +I GY + G  
Sbjct: 173 HCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNA 232

Query: 205 EVAMKLFDEMPDRDLFSWTCLVDGFSKCGK----VEI-AREIFYRMPNRNLVSWNAMING 259
           + A+ L + +   D  +   L+   ++ G     V I +  I + + +   VS N +I+ 
Sbjct: 233 KEALTLSNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVS-NKLIDL 291

Query: 260 YMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATL 319
           Y + G +    ++FD M +RDLI+WNS+I  YELN + + A+ L + M +  + P+  TL
Sbjct: 292 YAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTL 351

Query: 320 VSALSAVAGLAVLNKGRWMHSYIVKNG-FVVDGVLGTLLIQMYSKCGSIESALTVFRAIS 378
           +S  S ++ L  +   R +  + ++ G F+ D  +G  ++ MY+K G ++SA  VF  + 
Sbjct: 352 ISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLP 411

Query: 379 KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG-MKPTAITFIGVLNACSHAGLVNDGR 437
              V  W  +I G   +G A++A++++N M   G +     T++ VL ACS AG +  G 
Sbjct: 412 NTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGM 471

Query: 438 RYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLS--GA 495
           +    ++ + G+   +     L D+  + G LE+A S    +P R N V W +L++  G 
Sbjct: 472 KLHGRLLKN-GLYLDVFVVTSLADMYGKCGRLEDALSLFYQIP-RVNSVPWNTLIACHGF 529

Query: 496 RNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPG 555
             HG K +  +       V PD I  +V L +  + +G  D+     EMM+      D G
Sbjct: 530 HGHGEKAVMLFKEMLDEGVKPDHI-TFVTLLSACSHSGLVDEGQWCFEMMQ-----TDYG 583

Query: 556 -SSSIEHRGVL 565
            + S++H G +
Sbjct: 584 ITPSLKHYGCM 594


>gi|79456853|ref|NP_191848.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75116883|sp|Q683I9.1|PP295_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g62890
 gi|51968398|dbj|BAD42891.1| putative protein [Arabidopsis thaliana]
 gi|332646886|gb|AEE80407.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 573

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 221/481 (45%), Positives = 331/481 (68%), Gaps = 8/481 (1%)

Query: 216 DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDD 275
           D+D F  T L++ +S CG +  A+ +F    +++L +WN+++N Y KAG +D A +LFD+
Sbjct: 94  DKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDE 153

Query: 276 MEIRDLITWNSMIAGYELNGRFMEALELLETMLIGD-----VLPNDATLVSALSAVAGLA 330
           M  R++I+W+ +I GY + G++ EAL+L   M +       V PN+ T+ + LSA   L 
Sbjct: 154 MPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLG 213

Query: 331 VLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAI-SKKKVGHWTAMI 389
            L +G+W+H+YI K    +D VLGT LI MY+KCGS+E A  VF A+ SKK V  ++AMI
Sbjct: 214 ALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMI 273

Query: 390 VGLGMHGMATQALDLFNKMCRM-GMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYG 448
             L M+G+  +   LF++M     + P ++TF+G+L AC H GL+N+G+ YF MMI ++G
Sbjct: 274 CCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFG 333

Query: 449 IEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAA 508
           I P+I+HYGC+VD+  R+G ++EA+S I SMPM P+ +IW SLLSG+R  G+    E A 
Sbjct: 334 ITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGAL 393

Query: 509 NNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEF 568
             LI++ P   G YV+LSN+YA  G+W +V  +R  M+ +G  K PG S +E  GV+HEF
Sbjct: 394 KRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGVVHEF 453

Query: 569 VVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIA 628
           VVGD+S  +++ I++ L E+  +L+ AG+V DT +VLL + ++K+KE  L  HSE+LAIA
Sbjct: 454 VVGDESQQESERIYAMLDEIMQRLREAGYVTDTKEVLLDL-NEKDKEIALSYHSEKLAIA 512

Query: 629 FGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDF 688
           F L+  +  +P+RI+KNLR+C DCH V K++S +++REI+VRD +RFHHF++GSCSC+DF
Sbjct: 513 FCLMKTRPGTPVRIIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFRDGSCSCRDF 572

Query: 689 W 689
           W
Sbjct: 573 W 573



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 96/377 (25%), Positives = 174/377 (46%), Gaps = 55/377 (14%)

Query: 73  YARSIFDRILQHPSL--VLYNLLIKCYVFNQRS---HEALTLFCDLLDRFLLPDNFTLPC 127
           YA  IF   ++H  L   L+N++I+  V N  S   H  ++++  + +  + PD  T P 
Sbjct: 10  YANPIFH--IRHLKLESFLWNIIIRAIVHNVSSPQRHSPISVYLRMRNHRVSPDFHTFPF 67

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD 187
           ++        +  G++ H  +   G   D FV +SL++MY+  G++   +RVFD    KD
Sbjct: 68  LLPSFHNPLHLPLGQRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKD 127

Query: 188 LVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM-- 245
           L +WN +++ Y K G ++ A KLFDEMP+R++ SW+CL++G+  CGK + A ++F  M  
Sbjct: 128 LPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQL 187

Query: 246 --PNRNLVSWN----------------------------------------AMINGYMKA 263
             PN   V  N                                        A+I+ Y K 
Sbjct: 188 PKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKC 247

Query: 264 GDVDSACELFDDM-EIRDLITWNSMIAGYELNGRFMEALELLETMLIGD-VLPNDATLVS 321
           G ++ A  +F+ +   +D+  +++MI    + G   E  +L   M   D + PN  T V 
Sbjct: 248 GSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVG 307

Query: 322 ALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGT-LLIQMYSKCGSIESALTVFRAIS-K 379
            L A     ++N+G+     +++   +   +     ++ +Y + G I+ A +   ++  +
Sbjct: 308 ILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPME 367

Query: 380 KKVGHWTAMIVGLGMHG 396
             V  W +++ G  M G
Sbjct: 368 PDVLIWGSLLSGSRMLG 384



 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 142/298 (47%), Gaps = 28/298 (9%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL-----DRFLLPDNFTLPCV 128
           AR +FD + +  +++ ++ LI  YV   +  EAL LF ++      + F+ P+ FT+  V
Sbjct: 147 ARKLFDEMPER-NVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTV 205

Query: 129 IKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAM-DDKD 187
           +    RLGA+++GK +H  + K     D  + ++L+ MYAK G ++  +RVF+A+   KD
Sbjct: 206 LSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKD 265

Query: 188 LVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFS----------WTCLVDGFSKCGK--V 235
           + +++ +I      G  +   +LF EM   D  +            C+  G    GK   
Sbjct: 266 VKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYF 325

Query: 236 EIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIR-DLITWNSMIAGYELN 294
           ++  E F   P  ++  +  M++ Y ++G +  A      M +  D++ W S+++G  + 
Sbjct: 326 KMMIEEFGITP--SIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRML 383

Query: 295 GRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV 352
           G        L+ ++  D + + A ++  LS V        GRWM    +++   V G+
Sbjct: 384 GDIKTCEGALKRLIELDPMNSGAYVL--LSNVYA----KTGRWMEVKCIRHEMEVKGI 435



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 90/227 (39%), Gaps = 37/227 (16%)

Query: 312 VLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESAL 371
           V P+  T    L +      L  G+  H+ I+  G   D  + T L+ MYS CG + SA 
Sbjct: 58  VSPDFHTFPFLLPSFHNPLHLPLGQRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQ 117

Query: 372 TV-------------------------------FRAISKKKVGHWTAMIVGLGMHGMATQ 400
            V                               F  + ++ V  W+ +I G  M G   +
Sbjct: 118 RVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKE 177

Query: 401 ALDLFNKMC-----RMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEH 455
           ALDLF +M         ++P   T   VL+AC   G +  G ++ +  I+ Y +E  I  
Sbjct: 178 ALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQG-KWVHAYIDKYHVEIDIVL 236

Query: 456 YGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKD 502
              L+D+  + G LE AK    ++  + +   + +++     +G  D
Sbjct: 237 GTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTD 283


>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 609

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 215/476 (45%), Positives = 319/476 (67%), Gaps = 2/476 (0%)

Query: 216 DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDD 275
           + +LF    L+  +     V  AR++F   PNR++ SWN M++GY + G +D A +LFD+
Sbjct: 134 ENNLFVTNALIGMYVNLDFVVDARKVFDWSPNRDMYSWNIMLSGYARLGKMDEARQLFDE 193

Query: 276 MEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKG 335
           M  +D+++W +MI+G    G FMEAL++   ML   + PN+ TL S+L+A A L  L++G
Sbjct: 194 MPEKDVVSWTTMISGCLQVGYFMEALDIFHNMLAKGMSPNEYTLASSLAACANLVALDQG 253

Query: 336 RWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS--KKKVGHWTAMIVGLG 393
           RWMH YI KN   ++  L   LI MY+KCG +E A  +F +    K+KV  W AMI G  
Sbjct: 254 RWMHVYIKKNNIQMNERLLAGLIDMYAKCGELEFASKLFNSNPRLKRKVWPWNAMIGGFA 313

Query: 394 MHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTI 453
           +HG + +A+++F +M    + P  +TF+ +LNACSH   V +GR YF  M + Y ++P +
Sbjct: 314 VHGKSKEAIEVFEQMKIEKVSPNKVTFVALLNACSHGNRVEEGRYYFESMASHYRVKPEL 373

Query: 454 EHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIK 513
           EHYGCLVD+L R G L+EA+  I SM + P+  IW +LLS  + H + ++GE     + +
Sbjct: 374 EHYGCLVDLLGRAGRLKEAEEIISSMHLTPDVAIWGALLSACKIHKDAEMGERVGKIVKE 433

Query: 514 VAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDK 573
           + P+ +GC+V+L+NIY+  G W++   +RE + + G +K PG SSIE  G+ H+F+VGD+
Sbjct: 434 LDPNHLGCHVLLANIYSLTGNWNEARTLREKIAESGKKKTPGCSSIELNGMFHQFLVGDR 493

Query: 574 SHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLIN 633
           SHPQT +++  L EM  KLK AG++P++ +VLL I+D +++E  L  HSE+LAIAFGL+N
Sbjct: 494 SHPQTKQLYLFLDEMITKLKIAGYIPESGEVLLDIDDNEDRETALLKHSEKLAIAFGLMN 553

Query: 634 VKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
              ++PIRIVKNLRVC+DCH   K +S +Y+REIIVRD  R+HHFK+G+CSC D+W
Sbjct: 554 TTPKTPIRIVKNLRVCSDCHLAIKFISKVYDREIIVRDRIRYHHFKDGTCSCNDYW 609



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 131/499 (26%), Positives = 227/499 (45%), Gaps = 86/499 (17%)

Query: 27  ILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPS 86
           +L    + ++ +Q+HA  + T LI H   +++LL   +      + YA  +FD   Q P 
Sbjct: 7   LLSSCKSFRQIKQVHARLITTGLILHPIPTNKLLK-QLSSIFAPISYAHMVFDHFPQ-PD 64

Query: 87  LVLYNLLIKCYVFNQRSH-EALTLFCDLL-DRFLLPDNFTLPCVIKGAARLGAIKEGKQI 144
           L LYN +IK   F+  S  ++ T F  L+ +  L+P+ ++     KG      + EG+Q+
Sbjct: 65  LFLYNTIIKVLAFSTTSSADSFTKFRSLIREERLVPNQYSFAFAFKGCGSGVGVLEGEQV 124

Query: 145 HGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEV 204
                KLG   + FV ++L+ MY     +   R+VFD   ++D+ SWN ++ GY + G++
Sbjct: 125 RVHAIKLGLENNLFVTNALIGMYVNLDFVVDARKVFDWSPNRDMYSWNIMLSGYARLGKM 184

Query: 205 EVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM------PNR---------- 248
           + A +LFDEMP++D+ SWT ++ G  + G    A +IF+ M      PN           
Sbjct: 185 DEARQLFDEMPEKDVVSWTTMISGCLQVGYFMEALDIFHNMLAKGMSPNEYTLASSLAAC 244

Query: 249 -NLVSWN----------------------AMINGYMKAGDVDSACELFDDME--IRDLIT 283
            NLV+ +                       +I+ Y K G+++ A +LF+      R +  
Sbjct: 245 ANLVALDQGRWMHVYIKKNNIQMNERLLAGLIDMYAKCGELEFASKLFNSNPRLKRKVWP 304

Query: 284 WNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIV 343
           WN+MI G+ ++G+  EA+E+ E M I  V PN  T V+ L+A +    + +GR+      
Sbjct: 305 WNAMIGGFAVHGKSKEAIEVFEQMKIEKVSPNKVTFVALLNACSHGNRVEEGRYY----- 359

Query: 344 KNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALD 403
                                   ES  + +R   K ++ H+  ++  LG  G   +A +
Sbjct: 360 -----------------------FESMASHYRV--KPELEHYGCLVDLLGRAGRLKEAEE 394

Query: 404 LFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGC---LV 460
           + +    M + P    +  +L+AC        G R   ++     ++P   H GC   L 
Sbjct: 395 IISS---MHLTPDVAIWGALLSACKIHKDAEMGERVGKIVKE---LDPN--HLGCHVLLA 446

Query: 461 DILCRTGYLEEAKSTIESM 479
           +I   TG   EA++  E +
Sbjct: 447 NIYSLTGNWNEARTLREKI 465


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 249/662 (37%), Positives = 383/662 (57%), Gaps = 13/662 (1%)

Query: 36   ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIK 95
            E +++H    K     ++ + + L++ Y       +  A  +FD  L    +V +N +I 
Sbjct: 571  ECKRIHGCVYKLGFGSYNTVVNSLIATYFKS--GEVDSAHKLFDE-LGDRDVVSWNSMIS 627

Query: 96   CYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF 155
              V N  SH AL  F  +L   +  D  TL   +   A +G++  G+ +HG   K  F  
Sbjct: 628  GCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSR 687

Query: 156  DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP 215
            +    ++L+ MY+K G ++   + F+ M  K +VSW  LI  YV++G  + A++LF EM 
Sbjct: 688  EVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEME 747

Query: 216  DR----DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLV----SWNAMINGYMKAGDVD 267
             +    D++S T ++   +    ++  R++   +   N+       NA+++ Y K G ++
Sbjct: 748  SKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSME 807

Query: 268  SACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVA 327
             A  +F  + ++D+++WN+MI GY  N    EAL+L   M   +  P+  T+   L A  
Sbjct: 808  EAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQ-KESRPDGITMACLLPACG 866

Query: 328  GLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTA 387
             LA L  GR +H  I++NG+  +  +   LI MY KCGS+  A  +F  I +K +  WT 
Sbjct: 867  SLAALEIGRGIHGCILRNGYSSELHVANALIDMYVKCGSLVHARLLFDMIPEKDLITWTV 926

Query: 388  MIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDY 447
            MI G GMHG+  +A+  F KM   G+KP  ITF  +L ACSH+GL+N+G  +FN MI++ 
Sbjct: 927  MISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACSHSGLLNEGWGFFNSMISEC 986

Query: 448  GIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYA 507
             +EP +EHY C+VD+L RTG L +A + IE+MP++P+  IW +LL G R H + ++ E  
Sbjct: 987  NMEPKLEHYACMVDLLARTGNLSKAYNLIETMPIKPDATIWGALLCGCRIHHDVELAEKV 1046

Query: 508  ANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHE 567
            A ++ ++ PD  G YV+L+NIYA A +W++V ++RE + KRG +K PG S IE +G    
Sbjct: 1047 AEHVFELEPDNAGYYVLLANIYAEAEKWEEVKKLRERIGKRGLKKSPGCSWIEVQGKFTT 1106

Query: 568  FVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAI 627
            FV  D +HPQ   I S L+ +R K+K  GH P     L+   D  EKE  L  HSE+LA+
Sbjct: 1107 FVSADTAHPQAKSIFSLLNNLRIKMKNEGHSPKMRYALINAGDM-EKEVALCGHSEKLAM 1165

Query: 628  AFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKD 687
            AFG++N+ S   IR+ KNLRVC+DCH + K +S    REII+RD++RFHHFK+G CSC+D
Sbjct: 1166 AFGILNLPSGRTIRVAKNLRVCDDCHEMAKFMSKTTRREIILRDSNRFHHFKDGFCSCRD 1225

Query: 688  FW 689
            FW
Sbjct: 1226 FW 1227



 Score =  221 bits (563), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 147/507 (28%), Positives = 254/507 (50%), Gaps = 18/507 (3%)

Query: 26  NILKFSSTHK---ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRIL 82
           +IL+  + HK   E + +H++     +     + ++L+ +YV      L   R IFD IL
Sbjct: 456 SILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLVFMYVS--CGALREGRRIFDHIL 513

Query: 83  QHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGK 142
               + L+NL++  Y       E++ LF  +    +  +++T  C++K  A LG + E K
Sbjct: 514 SDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLGRVGECK 573

Query: 143 QIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKG 202
           +IHG V+KLGFG    V++SL++ Y K GE+D   ++FD + D+D+VSWN +I G V  G
Sbjct: 574 RIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNG 633

Query: 203 EVEVAMKLFDEM----PDRDLFSWTCLVDGFSKCGKVEIAREIFYR----MPNRNLVSWN 254
               A++ F +M       DL +    V   +  G + + R +  +      +R ++  N
Sbjct: 634 FSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNN 693

Query: 255 AMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLP 314
            +++ Y K G+++ A + F+ M  + +++W S+IA Y   G + +A+ L   M    V P
Sbjct: 694 TLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSP 753

Query: 315 NDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVF 374
           +  ++ S L A A    L+KGR +H+YI KN   +   +   L+ MY+KCGS+E A  VF
Sbjct: 754 DVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVF 813

Query: 375 RAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVN 434
             I  K +  W  MI G   + +  +AL LF +M +   +P  IT   +L AC     + 
Sbjct: 814 SQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKES-RPDGITMACLLPACGSLAALE 872

Query: 435 DGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG 494
            GR     ++ + G    +     L+D+  + G L  A+   + +P + + + W  ++SG
Sbjct: 873 IGRGIHGCILRN-GYSSELHVANALIDMYVKCGSLVHARLLFDMIPEK-DLITWTVMISG 930

Query: 495 ARNH--GNKDIGEYAANNLIKVAPDTI 519
              H  GN+ I  +    +  + PD I
Sbjct: 931 CGMHGLGNEAIATFQKMRIAGIKPDEI 957


>gi|297817620|ref|XP_002876693.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297322531|gb|EFH52952.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 572

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 222/481 (46%), Positives = 328/481 (68%), Gaps = 8/481 (1%)

Query: 216 DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDD 275
           D+D F  T L++ +S CG +  A  IF    +++L +WN+++N Y KAG ++ A +LFD+
Sbjct: 93  DKDPFVRTSLLNMYSSCGDLSSALRIFDESVSKDLPAWNSVVNAYAKAGLINHARKLFDE 152

Query: 276 MEIRDLITWNSMIAGYELNGRFMEALELLETMLIGD-----VLPNDATLVSALSAVAGLA 330
           M  R++I+W+ +I GY + G++ EAL+L   M +       V PN  T+ + LSA   L 
Sbjct: 153 MPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEVFVSPNKFTMSTVLSACGRLG 212

Query: 331 VLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAI-SKKKVGHWTAMI 389
            L +G+W+HSYI K G  +D VLGT LI MY+KCGS+E A  VF A+ SKK V  ++AMI
Sbjct: 213 ALEQGKWVHSYIDKYGVEIDIVLGTALIDMYAKCGSLERAKRVFDALGSKKDVKAYSAMI 272

Query: 390 VGLGMHGMATQALDLFNKMCRMG-MKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYG 448
             L M+G+  +   +F++M     + P ++TF+G+L AC H GL+N G+ YF MM  ++G
Sbjct: 273 CCLAMYGLTDECFQVFSEMTTSNNINPNSVTFVGILGACVHRGLINKGKSYFKMMTEEFG 332

Query: 449 IEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAA 508
           I P+I+HYGC+VD+  R+G ++EA+S I SMPM P+ +IW SLLSG+R  G+    E A 
Sbjct: 333 ITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGAL 392

Query: 509 NNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEF 568
             LI++ P   G YV+LSN+YA  G+W +V  +R  M+ +G +K PG S +E  GV+HEF
Sbjct: 393 KRLIELDPMNSGAYVLLSNVYAKTGRWIEVKRIRHEMEVKGIKKVPGCSYVEVEGVVHEF 452

Query: 569 VVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIA 628
           VVGD+S  +++ I++ L E+  +L+ AG+V DT +VLL +E +K+KE  L  HSE+LAIA
Sbjct: 453 VVGDESQQESERIYAMLEEIMQRLREAGYVSDTKEVLLDLE-EKDKEMALSYHSEKLAIA 511

Query: 629 FGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDF 688
           F L+  +  +P+RI+KNLR+C DCH V K++S +++REI+VRD +RFHHF +GSCSC+DF
Sbjct: 512 FCLMKTRPGTPVRIIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFSDGSCSCRDF 571

Query: 689 W 689
           W
Sbjct: 572 W 572



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 96/378 (25%), Positives = 172/378 (45%), Gaps = 53/378 (14%)

Query: 71  LHYARSIFD-RILQHPSLVLYNLLIKCYVFN---QRSHEALTLFCDLLDRFLLPDNFTLP 126
           + YA  IF  R L+  S V +N++I+  V N    + H  ++++  +    + PD  T P
Sbjct: 7   ISYANPIFHIRHLKLESFV-WNIIIRAIVHNVSPPQRHSPISVYFRMRHHCVSPDFHTFP 65

Query: 127 CVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK 186
            ++        +  G++ H  +   G   D FV +SL++MY+  G++    R+FD    K
Sbjct: 66  FLLPSFHNPIHLPLGQRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLSSALRIFDESVSK 125

Query: 187 DLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM- 245
           DL +WN +++ Y K G +  A KLFDEMP+R++ SW+CL++G+  CGK + A ++F  M 
Sbjct: 126 DLPAWNSVVNAYAKAGLINHARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQ 185

Query: 246 ---PNRNLVSWN----------------------------------------AMINGYMK 262
              PN   VS N                                        A+I+ Y K
Sbjct: 186 LPKPNEVFVSPNKFTMSTVLSACGRLGALEQGKWVHSYIDKYGVEIDIVLGTALIDMYAK 245

Query: 263 AGDVDSACELFDDM-EIRDLITWNSMIAGYELNGRFMEALELLETMLIG-DVLPNDATLV 320
            G ++ A  +FD +   +D+  +++MI    + G   E  ++   M    ++ PN  T V
Sbjct: 246 CGSLERAKRVFDALGSKKDVKAYSAMICCLAMYGLTDECFQVFSEMTTSNNINPNSVTFV 305

Query: 321 SALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGT-LLIQMYSKCGSIESALTVFRAIS- 378
             L A     ++NKG+     + +   +   +     ++ +Y + G I+ A +   ++  
Sbjct: 306 GILGACVHRGLINKGKSYFKMMTEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPM 365

Query: 379 KKKVGHWTAMIVGLGMHG 396
           +  V  W +++ G  M G
Sbjct: 366 EPDVLIWGSLLSGSRMLG 383



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 147/301 (48%), Gaps = 28/301 (9%)

Query: 71  LHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL-----DRFLLPDNFTL 125
           +++AR +FD + +  +++ ++ LI  YV   +  EAL LF ++      + F+ P+ FT+
Sbjct: 143 INHARKLFDEMPER-NVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEVFVSPNKFTM 201

Query: 126 PCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAM-D 184
             V+    RLGA+++GK +H  + K G   D  + ++L+ MYAK G ++  +RVFDA+  
Sbjct: 202 STVLSACGRLGALEQGKWVHSYIDKYGVEIDIVLGTALIDMYAKCGSLERAKRVFDALGS 261

Query: 185 DKDLVSWNCLIDGYVKKGEVEVAMKLFDEM-------PDRDLFS---WTCLVDGFSKCGK 234
            KD+ +++ +I      G  +   ++F EM       P+   F      C+  G    GK
Sbjct: 262 KKDVKAYSAMICCLAMYGLTDECFQVFSEMTTSNNINPNSVTFVGILGACVHRGLINKGK 321

Query: 235 --VEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIR-DLITWNSMIAGY 291
              ++  E F   P  ++  +  M++ Y ++G +  A      M +  D++ W S+++G 
Sbjct: 322 SYFKMMTEEFGITP--SIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGS 379

Query: 292 ELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDG 351
            + G        L+ ++  D + + A ++  LS V        GRW+    +++   V G
Sbjct: 380 RMLGDIKTCEGALKRLIELDPMNSGAYVL--LSNVYA----KTGRWIEVKRIRHEMEVKG 433

Query: 352 V 352
           +
Sbjct: 434 I 434



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 95/227 (41%), Gaps = 37/227 (16%)

Query: 312 VLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESAL 371
           V P+  T    L +      L  G+  H+ I+  G   D  + T L+ MYS CG + SAL
Sbjct: 57  VSPDFHTFPFLLPSFHNPIHLPLGQRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLSSAL 116

Query: 372 TVF-RAISK------------------------------KKVGHWTAMIVGLGMHGMATQ 400
            +F  ++SK                              + V  W+ +I G  M G   +
Sbjct: 117 RIFDESVSKDLPAWNSVVNAYAKAGLINHARKLFDEMPERNVISWSCLINGYVMCGKYKE 176

Query: 401 ALDLFNKMC-----RMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEH 455
           ALDLF +M       + + P   T   VL+AC   G +  G ++ +  I+ YG+E  I  
Sbjct: 177 ALDLFREMQLPKPNEVFVSPNKFTMSTVLSACGRLGALEQG-KWVHSYIDKYGVEIDIVL 235

Query: 456 YGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKD 502
              L+D+  + G LE AK   +++  + +   + +++     +G  D
Sbjct: 236 GTALIDMYAKCGSLERAKRVFDALGSKKDVKAYSAMICCLAMYGLTD 282


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 246/667 (36%), Positives = 391/667 (58%), Gaps = 13/667 (1%)

Query: 31  SSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLY 90
           +S  K  +++H   + +   ++    + ++++Y       ++ A ++FDR+ +   LV +
Sbjct: 43  NSDLKRGKEIHGSVITSGFSWNLFAMTGVVNMYA--KCRQINDAYNMFDRMPER-DLVCW 99

Query: 91  NLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFK 150
           N +I  Y  N  +  AL L   + +    PD+ T+  ++   A    ++ G  +HG V +
Sbjct: 100 NTMISGYAQNGFAKVALMLVLRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLR 159

Query: 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
            GF     V ++LV MY+K G + + R +FD MD + +VSWN +IDGYV+ G+ E AM +
Sbjct: 160 AGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLI 219

Query: 211 FDEMPDRDLFSWTCLVDGF----SKCGKVEIAREIFYRMPNRNLVS----WNAMINGYMK 262
           F +M D  +      V G     +  G +E  + +   +    L S     N++I+ Y K
Sbjct: 220 FQKMLDEGVQPTNVTVMGALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSK 279

Query: 263 AGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSA 322
              VD A ++F ++  + L++WN+MI GY  NG   EAL     M   ++ P+  T+VS 
Sbjct: 280 CKRVDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSV 339

Query: 323 LSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKV 382
           + A+A L++  + +W+H  +++     +  + T L+ MY+KCG+I +A  +F  ++ + V
Sbjct: 340 IPALAELSIPRQAKWIHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHV 399

Query: 383 GHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNM 442
             W AMI G G HG+   +++LF +M +  +KP  ITF+  L+ACSH+GLV +G  +F  
Sbjct: 400 ITWNAMIDGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFES 459

Query: 443 MINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKD 502
           M  DYGIEPT++HYG +VD+L R G L +A   I+ MP++P   ++ ++L   + H N D
Sbjct: 460 MKKDYGIEPTMDHYGAMVDLLGRAGRLNQAWDFIQKMPIKPGITVYGAMLGACKIHKNVD 519

Query: 503 IGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHR 562
           +GE AA  + K+ PD  G +V+L+NIYA A  W KV++VR +M+K G +K PG S +E  
Sbjct: 520 LGEKAAFEIFKLNPDDGGYHVLLANIYATASMWGKVAKVRTIMEKSGLQKTPGCSLVEIG 579

Query: 563 GVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHS 622
             +H F  G  SHPQ+ +I+S L  + ++++AAG+VPDT  +    +D K +   L  HS
Sbjct: 580 NEVHSFYSGTTSHPQSKKIYSYLETLVDEIRAAGYVPDTNSIHDVEDDVKVQ--LLNTHS 637

Query: 623 ERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGS 682
           E+LAIAFGL+N  + +PI I KNLRVC DCH+ TK +S +  REIIVRD  RFH FK+G 
Sbjct: 638 EKLAIAFGLLNTSTGTPIHIRKNLRVCGDCHNATKYISLVTGREIIVRDMHRFHLFKDGV 697

Query: 683 CSCKDFW 689
           CSC D+W
Sbjct: 698 CSCGDYW 704



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 122/446 (27%), Positives = 203/446 (45%), Gaps = 72/446 (16%)

Query: 93  LIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLG 152
           ++K Y  +     AL+ F  +    + P  +    ++K       +K GK+IHG V   G
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 153 FGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFD 212
           F ++ F ++ +V+MYAK  +I+    +FD M ++DLV WN +I GY + G  +VA+ L  
Sbjct: 61  FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVL 120

Query: 213 EM------PD----------------------------RDLFS-----WTCLVDGFSKCG 233
            M      PD                            R  F       T LVD +SKCG
Sbjct: 121 RMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCG 180

Query: 234 KVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYEL 293
            V IAR IF  M +R +VSWN+MI+GY+++GD + A  +F                    
Sbjct: 181 SVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIF-------------------- 220

Query: 294 NGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVL 353
                      + ML   V P + T++ AL A A L  L +G+++H  + +     D  +
Sbjct: 221 -----------QKMLDEGVQPTNVTVMGALHACADLGDLERGKFVHKLVDQLKLDSDVSV 269

Query: 354 GTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGM 413
              LI MYSKC  ++ A  +F+ +  K +  W AMI+G   +G   +AL+ F +M    +
Sbjct: 270 MNSLISMYSKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNI 329

Query: 414 KPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAK 473
           KP + T + V+ A +   +    +    ++I  + ++  +     LVD+  + G +  A+
Sbjct: 330 KPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRF-LDKNVFVMTALVDMYAKCGAIHTAR 388

Query: 474 STIESMPMRPNFVIWMSLLSGARNHG 499
              + M  R + + W +++ G   HG
Sbjct: 389 KLFDMMNAR-HVITWNAMIDGYGTHG 413


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 244/563 (43%), Positives = 350/563 (62%), Gaps = 21/563 (3%)

Query: 142 KQIHGLVFKLGFGFD-----KFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLID 196
           +QIH    + G         K+++ +L+S  +    +    ++F  + + ++ +WN +I 
Sbjct: 57  RQIHAFSIRHGVPLTNPDMGKYLIFTLLSFCSP---MSYAHQIFSQIQNPNIFTWNTMIR 113

Query: 197 GYVKKGEVEVAMKLFDEMP----DRDLFSWTCLVDGFSKCGKV---EIAREIFYRMPNRN 249
           GY +      A++L+ +M     + D  ++  L+   +K   V   E    I  R    +
Sbjct: 114 GYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAKLMDVREGEKVHSIAIRNGFES 173

Query: 250 LV-SWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETML 308
           LV   N +++ Y   G  +SA +LF+ M  R+L+TWNS+I GY LNGR  EAL L   M 
Sbjct: 174 LVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMG 233

Query: 309 IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVL--GTLLIQMYSKCGS 366
           +  V P+  T+VS LSA A L  L  GR  H Y+VK G  +DG L  G  L+ +Y+KCGS
Sbjct: 234 LRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVG--LDGNLHAGNALLDLYAKCGS 291

Query: 367 IESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNA 426
           I  A  VF  + +K V  WT++IVGL ++G   +AL+LF ++ R G+ P+ ITF+GVL A
Sbjct: 292 IRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYA 351

Query: 427 CSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFV 486
           CSH G+V++G  YF  M  +YGI P IEHYGC+VD+L R G +++A   I++MPM+PN V
Sbjct: 352 CSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAV 411

Query: 487 IWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMK 546
           +W +LL     HG+  +GE A   L+++ P   G YV+LSN+YA+  +W  V +VR  M 
Sbjct: 412 VWRTLLGACTIHGHLALGEVARAQLLQLEPKHSGDYVLLSNLYASEQRWSDVHKVRRTML 471

Query: 547 KRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLL 606
           + G +K PG S +E R  LHEFV+GD+SHPQT+EI+ KL+E+   LK  G+VP  + VL 
Sbjct: 472 REGVKKTPGHSLVELRNRLHEFVMGDRSHPQTEEIYVKLAEITKLLKLEGYVPHISNVLA 531

Query: 607 CIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNRE 666
            IE++ EKE  L  HSE++AIAF LIN  +  PIR+VKNLRVC DCH   KL+S +++RE
Sbjct: 532 DIEEE-EKETALSYHSEKIAIAFMLINTAAGIPIRVVKNLRVCADCHLAIKLISKVFDRE 590

Query: 667 IIVRDNSRFHHFKNGSCSCKDFW 689
           I+VRD SRFHHFK+G CSCKD+W
Sbjct: 591 IVVRDRSRFHHFKDGHCSCKDYW 613



 Score =  165 bits (417), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 110/418 (26%), Positives = 202/418 (48%), Gaps = 52/418 (12%)

Query: 27  ILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPS 86
           +L  +S+  + +Q+HA S++  +   +    + L   +    + + YA  IF +I Q+P+
Sbjct: 46  LLSCASSKFKFRQIHAFSIRHGVPLTNPDMGKYLIFTLLSFCSPMSYAHQIFSQI-QNPN 104

Query: 87  LVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHG 146
           +  +N +I+ Y  ++    AL L+  +    + PD  T P ++K  A+L  ++EG+++H 
Sbjct: 105 IFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAKLMDVREGEKVHS 164

Query: 147 LVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEV 206
           +  + GF    FV ++LV MYA  G  +   ++F+ M +++LV+WN +I+GY   G    
Sbjct: 165 IAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPNE 224

Query: 207 AMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREIFYRMP----NRNLVSWNAMIN 258
           A+ LF EM  R    D F+   L+   ++ G + + R     M     + NL + NA+++
Sbjct: 225 ALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLD 284

Query: 259 GYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDAT 318
            Y K G +  A ++FD+ME + +++W S+I G  +NG   EALEL + +    ++P++ T
Sbjct: 285 LYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEIT 344

Query: 319 LVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS 378
            V  L A                                    S CG ++     F+ + 
Sbjct: 345 FVGVLYAC-----------------------------------SHCGMVDEGFDYFKRMK 369

Query: 379 KK-----KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAG 431
           ++     K+ H+  M+  LG  G+  QA +       M M+P A+ +  +L AC+  G
Sbjct: 370 EEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQN---MPMQPNAVVWRTLLGACTIHG 424



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 163/334 (48%), Gaps = 25/334 (7%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           +E +++H+++++        + + L+ +Y      +   A  +F+ ++   +LV +N +I
Sbjct: 157 REGEKVHSIAIRNGFESLVFVQNTLVHMYAA--CGHAESAHKLFE-LMAERNLVTWNSVI 213

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
             Y  N R +EALTLF ++  R + PD FT+  ++   A LGA+  G++ H  + K+G  
Sbjct: 214 NGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLD 273

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
            +    ++L+ +YAK G I    +VFD M++K +VSW  LI G    G  + A++LF E+
Sbjct: 274 GNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKEL 333

Query: 215 PDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNR-----NLVSWNAMINGYMKAGD 265
             + L     ++  ++   S CG V+   + F RM         +  +  M++   +AG 
Sbjct: 334 ERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGL 393

Query: 266 VDSACELFDDMEIR-DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPN---DATLVS 321
           V  A E   +M ++ + + W +++    ++G    AL  +    +  + P    D  L+S
Sbjct: 394 VKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHL--ALGEVARAQLLQLEPKHSGDYVLLS 451

Query: 322 ALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGT 355
            L A       ++ RW   + V+   + +GV  T
Sbjct: 452 NLYA-------SEQRWSDVHKVRRTMLREGVKKT 478


>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
 gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 228/553 (41%), Positives = 334/553 (60%), Gaps = 27/553 (4%)

Query: 163 LVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSW 222
           ++S Y +  + DL R +FD M ++DL SWN ++ GYV+  +++ A  LF+ MP+RD+ SW
Sbjct: 1   MISGYLRNHKFDLARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERMPERDIVSW 60

Query: 223 TCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSA------------- 269
             ++ G+++ G V+ AREIFY+MP +N +SWN ++  Y++ G ++ A             
Sbjct: 61  NAMLSGYAQNGFVDEAREIFYKMPLKNGISWNGLLAAYVQNGRIEDAKRLFESKMDWTLV 120

Query: 270 ---C----------ELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPND 316
              C           LFD+M  RD I+W++MIAGY  NG   EAL     M       N 
Sbjct: 121 SWNCLMGGFVRKRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNR 180

Query: 317 ATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRA 376
           ++   ALS  + +A L  GR +H  +VK G+     +G  L+ MY KCGSI+ A   F+ 
Sbjct: 181 SSFTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQE 240

Query: 377 ISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDG 436
           I +K V  W  MI G   HG   +AL +F  M   G++P   T + VL ACSHAGLV+ G
Sbjct: 241 ILEKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQG 300

Query: 437 RRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGAR 496
             YF  M  DYGI   + HY C+VD+L R G LEEA++ +++MP  P+   W +LL  +R
Sbjct: 301 SEYFYSMNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASR 360

Query: 497 NHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGS 556
            HGN ++GE AA  + ++ P   G Y++LS +YAA+G+W    ++R  M+ +G +K PG 
Sbjct: 361 IHGNTELGEKAAQIIFEMEPHNSGMYILLSKLYAASGRWSDAGKMRLEMRNKGVKKVPGY 420

Query: 557 SSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEA 616
           S +E +  +H F VGD SHP TD+I++ L EM  KLK  G++  T  V   +E++ EK  
Sbjct: 421 SWLEVQNKIHTFKVGDTSHPHTDKIYTFLEEMDLKLKQEGYISSTNLVFHDVEEE-EKVH 479

Query: 617 ELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFH 676
            L+ HSE+LA+A+G++ + +  PIR++KNLRVC DCH+  K +S I  R II+RDN RFH
Sbjct: 480 MLKYHSEKLAVAYGILYIPAGRPIRVIKNLRVCEDCHNAIKYISKIVGRLIILRDNHRFH 539

Query: 677 HFKNGSCSCKDFW 689
           +F+ GSCSC+DFW
Sbjct: 540 YFEGGSCSCRDFW 552



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 135/276 (48%), Gaps = 23/276 (8%)

Query: 75  RSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAAR 134
           R++FD + Q  S + ++ +I  Y  N  S EAL  F ++       +  +  C +   + 
Sbjct: 134 RNLFDNMPQRDS-ISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFTCALSTCSN 192

Query: 135 LGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCL 194
           + A++ G+Q+H  + K G+    +V ++L++MY K G ID  R  F  + +KD+VSWN +
Sbjct: 193 IAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVVSWNTM 252

Query: 195 IDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRN- 249
           I GY + G  E A+ +F+ M       D  +   ++   S  G V+   E FY M NR+ 
Sbjct: 253 IHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQGSEYFYSM-NRDY 311

Query: 250 -----LVSWNAMINGYMKAGDVDSACELFDDMEIR-DLITWNSMIAGYELNGRFMEALEL 303
                LV +  M++   +AG ++ A  L  +M    D  TW +++    ++G      EL
Sbjct: 312 GITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGN----TEL 367

Query: 304 LE--TMLIGDVLPNDATLVSALSAVAGLAVLNKGRW 337
            E    +I ++ P+++ +   LS +   +    GRW
Sbjct: 368 GEKAAQIIFEMEPHNSGMYILLSKLYAAS----GRW 399


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 253/675 (37%), Positives = 392/675 (58%), Gaps = 18/675 (2%)

Query: 27  ILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHP- 85
           +LK   +  + +++H   +K    +   +++ L+ LY       +  A  +F   +  P 
Sbjct: 156 VLKACLSLADGEKMHCWVLKMGFEHDVYVAASLIHLY--SRFGAVEVAHKVF---VDMPV 210

Query: 86  -SLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQI 144
             +  +N +I  +  N    EAL +   +    +  D  T+  ++   A+   +  G  +
Sbjct: 211 RDVGSWNAMISGFCQNGNVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLV 270

Query: 145 HGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEV 204
           H  V K G   D FV ++L++MY+KFG +   +RVFD M+ +DLVSWN +I  Y +  + 
Sbjct: 271 HLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDP 330

Query: 205 EVAMKLFDEM----PDRDLFSWTCLVDGFSKCGKVEIAREIF-----YRMPNRNLVSWNA 255
             A+  F EM       DL +   L   F +     I R +       R    ++V  NA
Sbjct: 331 VTALGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNA 390

Query: 256 MINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIG-DVLP 314
           ++N Y K G +D A  +F+ +  RD+I+WN++I GY  NG   EA++    M  G  ++P
Sbjct: 391 LVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMMEEGRTIVP 450

Query: 315 NDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVF 374
           N  T VS L A + +  L +G  +H  ++KN   +D  + T LI MY KCG +E A+++F
Sbjct: 451 NQGTWVSILPAYSHVGALQQGMKIHGRLIKNCLFLDVFVATCLIDMYGKCGRLEDAMSLF 510

Query: 375 RAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVN 434
             I ++    W A+I  LG+HG   +AL LF  M   G+K   ITF+ +L+ACSH+GLV+
Sbjct: 511 YEIPQETSVPWNAIISSLGIHGHGEKALQLFKDMRADGVKADHITFVSLLSACSHSGLVD 570

Query: 435 DGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG 494
           + +  F+ M  +Y I+P ++HYGC+VD+  R GYLE+A + + +MP++ +  IW +LL+ 
Sbjct: 571 EAQWCFDTMQKEYRIKPNLKHYGCMVDLFGRAGYLEKAYNLVSNMPIQADASIWGTLLAA 630

Query: 495 ARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDP 554
            R HGN ++G +A++ L++V  + +G YV+LSNIYA  G+W+   +VR + + RG RK P
Sbjct: 631 CRIHGNAELGTFASDRLLEVDSENVGYYVLLSNIYANVGKWEGAVKVRSLARDRGLRKTP 690

Query: 555 GSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEK 614
           G SS+    V+  F  G++SHPQ  EI+ +L  +  K+K+ G+VPD + VL  +E + EK
Sbjct: 691 GWSSVVVGSVVEVFYAGNQSHPQCAEIYEELRVLNAKMKSLGYVPDYSFVLQDVE-EDEK 749

Query: 615 EAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSR 674
           E  L +HSERLAI FG+I+   +SPIRI KNLRVC DCH+ TK +S I  REIIVRD++R
Sbjct: 750 EEILTSHSERLAIVFGIISTPPKSPIRIFKNLRVCGDCHNATKYISKITEREIIVRDSNR 809

Query: 675 FHHFKNGSCSCKDFW 689
           FHHFK+G CSC D+W
Sbjct: 810 FHHFKDGICSCGDYW 824



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 131/539 (24%), Positives = 228/539 (42%), Gaps = 118/539 (21%)

Query: 138 IKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDG 197
           I   KQ+H L+  LG   D  +L+ LV++YA  G++ L    F  +  K++ SWN ++  
Sbjct: 64  INVAKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSWNSMVSA 123

Query: 198 YVKKGEVEVAMKLFDEM-------PD------------------------------RDLF 220
           YV++G    +M    E+       PD                               D++
Sbjct: 124 YVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLADGEKMHCWVLKMGFEHDVY 183

Query: 221 SWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIR- 279
               L+  +S+ G VE+A ++F  MP R++ SWNAMI+G+ + G+V  A  + D M+   
Sbjct: 184 VAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMKTEE 243

Query: 280 --------------------------------------DLITWNSMIAGYELNGRFMEAL 301
                                                 D+   N++I  Y   GR  +A 
Sbjct: 244 VKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQ 303

Query: 302 ELLETMLIGDVL-------------------------------PNDATLVSALSAVAGLA 330
            + + M + D++                               P+  T+VS  S    L+
Sbjct: 304 RVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFGQLS 363

Query: 331 VLNKGRWMHSYIVKNGFV-VDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMI 389
               GR +H ++V+  ++ VD V+G  L+ MY+K GSI+ A  VF  +  + V  W  +I
Sbjct: 364 DRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLI 423

Query: 390 VGLGMHGMATQALDLFNKMCR-MGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYG 448
            G   +G+A++A+D +N M     + P   T++ +L A SH G +  G +    +I +  
Sbjct: 424 TGYAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRLIKN-C 482

Query: 449 IEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLS--GARNHGNKDIGEY 506
           +   +    CL+D+  + G LE+A S    +P   + V W +++S  G   HG K +  +
Sbjct: 483 LFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQETS-VPWNAIISSLGIHGHGEKALQLF 541

Query: 507 AANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVL 565
                  V  D I  +V L +  + +G  D+     + M+K  +R  P   +++H G +
Sbjct: 542 KDMRADGVKADHI-TFVSLLSACSHSGLVDEAQWCFDTMQKE-YRIKP---NLKHYGCM 595



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 152/309 (49%), Gaps = 13/309 (4%)

Query: 229 FSKCGKVEIAREIFYRM----PNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITW 284
           F  C  + +A+++   +      +++V    ++  Y   GD+  +   F  ++ +++ +W
Sbjct: 58  FRSCTNINVAKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSW 117

Query: 285 NSMIAGYELNGRFMEALELLETML-IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIV 343
           NSM++ Y   GR+ ++++ +  +L +  V P+  T    L A   LA    G  MH +++
Sbjct: 118 NSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLA---DGEKMHCWVL 174

Query: 344 KNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALD 403
           K GF  D  +   LI +YS+ G++E A  VF  +  + VG W AMI G   +G   +AL 
Sbjct: 175 KMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALR 234

Query: 404 LFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDIL 463
           + ++M    +K   +T   +L  C+ +  V  G    ++ +  +G+E  +     L+++ 
Sbjct: 235 VLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGG-VLVHLYVIKHGLESDVFVSNALINMY 293

Query: 464 CRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGN--KDIGEYAANNLIKVAPDTIGC 521
            + G L++A+   + M +R + V W S+++    + +    +G +     + + PD +  
Sbjct: 294 SKFGRLQDAQRVFDGMEVR-DLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTV 352

Query: 522 YVVLSNIYA 530
            V L++I+ 
Sbjct: 353 -VSLASIFG 360


>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 241/597 (40%), Positives = 360/597 (60%), Gaps = 42/597 (7%)

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAK--FGEIDLGRRVFDAMDDKDLVSW 191
           R   ++E +QIHG + K G   D+   S L++  A    G +   R VFD +   +   W
Sbjct: 27  RCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMW 86

Query: 192 NCLIDGYVKKGEVEVAMKLFDEM-----PDR----------------------------- 217
           N +I GY    E E A+ L+  M     P                               
Sbjct: 87  NTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHIIK 146

Query: 218 -----DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACEL 272
                ++++   L++ +SK G ++ AR +F ++  R+ VSWN+MI+GY K G+++ A E+
Sbjct: 147 MGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEI 206

Query: 273 FDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVL 332
           F+ M  R++I+W SMI+G    G+  EAL L   M    +  ++  LVS L A A L VL
Sbjct: 207 FNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVL 266

Query: 333 NKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGL 392
           ++G+W+H+YI K+   +D +LG +LI MY+KCG +E A+ VFR + +K V  WTAMI G 
Sbjct: 267 DQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGY 326

Query: 393 GMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT 452
            +HG   +AL+ F KM   G++P  +TF G+L ACSHAGLV++ +  F  M   +G +P+
Sbjct: 327 AIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPS 386

Query: 453 IEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLI 512
           IEHYGC+VD+L R G L+EA+  IE+MP++PN  IW +LL+    HGN ++G+     LI
Sbjct: 387 IEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILI 446

Query: 513 KVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGD 572
           +V P   G Y+ L++I+AAAG+W++ + VR  MK++G  K PG S I   G  HEF+ GD
Sbjct: 447 QVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGD 506

Query: 573 KSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLI 632
           +SHPQ  EI   L ++  +L+  G+ P    +LL +ED++++ A + +HSE+LA+ FGLI
Sbjct: 507 ESHPQIKEIDHMLEQIVERLREEGYKPKLGDLLLDLEDKEKETA-IHHHSEKLAVTFGLI 565

Query: 633 NVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           + K    IRIVKNLRVC DCH+V KL+S +Y REI++RD +RFH FK+G+C+C D+W
Sbjct: 566 STKPGMTIRIVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDGNCTCGDYW 622



 Score =  215 bits (547), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 143/483 (29%), Positives = 240/483 (49%), Gaps = 82/483 (16%)

Query: 3   TQTLQHSSPIHALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSL 62
           T T Q SS  +A Q      LH  +L+  S  +E +Q+H   +KT LI     +S+LL+ 
Sbjct: 7   TPTSQLSSESNAAQT-----LH--LLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAF 59

Query: 63  YVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDN 122
              P+  +L YAR++FDRI + P+  ++N +I+ Y  ++   EAL L+  +L   +  + 
Sbjct: 60  CASPNSGSLAYARTVFDRIFR-PNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNA 118

Query: 123 FTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDA 182
           +T P ++K  + + A++E +QIH  + K+GFG + +  +SL+++Y+K G+I   R +FD 
Sbjct: 119 YTFPFLLKACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQ 178

Query: 183 MDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIF 242
           +D +D VSWN +IDGY K GE+E+A ++F+ MP+R++ SWT ++ G    GK + A  +F
Sbjct: 179 VDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLF 238

Query: 243 YRMP-------NRNLVS---------------W-----------------NAMINGYMKA 263
           +RM        N  LVS               W                   +I+ Y K 
Sbjct: 239 HRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKC 298

Query: 264 GDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSAL 323
           GD++ A E+F  ME + +  W +MI+GY ++GR  EALE    M    V PN  T    L
Sbjct: 299 GDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGIL 358

Query: 324 SAVAGLAVLNKGRWMHSYIVK-NGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKV 382
           +A +   ++++ + +   + + +GF                               K  +
Sbjct: 359 TACSHAGLVHEAKLLFESMERIHGF-------------------------------KPSI 387

Query: 383 GHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNM 442
            H+  M+  LG  G+  +A +L      M +KP A  +  +LNAC   G +  G++   +
Sbjct: 388 EHYGCMVDLLGRAGLLKEAEELIEN---MPVKPNAAIWGALLNACHIHGNLELGKQIGKI 444

Query: 443 MIN 445
           +I 
Sbjct: 445 LIQ 447


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 236/628 (37%), Positives = 375/628 (59%), Gaps = 14/628 (2%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           A  +FD++ +  +LV + L+I  +     + +A+ LF D+     +PD FT   V+    
Sbjct: 9   AYKVFDKMPER-NLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACT 67

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKF---GEIDLGRRVFDAMDDKDLVS 190
            LG +  GKQ+H  V +LG   D  V  SLV MYAK    G +D  R+VF+ M + +++S
Sbjct: 68  ELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMS 127

Query: 191 WNCLIDGYVKKGEVEV-AMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRM 245
           W  +I  Y + GE +  A++LF +M    +    FS++ ++             +++   
Sbjct: 128 WTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYA 187

Query: 246 PNRNLVS----WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEAL 301
               + S     N++I+ Y ++G ++ A + FD +  ++L+++N+++ GY  N +  EA 
Sbjct: 188 VKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAF 247

Query: 302 ELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMY 361
            L   +    +  +  T  S LS  A +  + KG  +H  ++K G+  +  +   LI MY
Sbjct: 248 LLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMY 307

Query: 362 SKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFI 421
           S+CG+IE+A  VF  +  + V  WT+MI G   HG AT+AL++F+KM   G KP  IT++
Sbjct: 308 SRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYV 367

Query: 422 GVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPM 481
            VL+ACSH G++++G+++FN M  ++GI P +EHY C+VD+L R+G L EA   I SMP+
Sbjct: 368 AVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPL 427

Query: 482 RPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEV 541
             + ++W +LL   R HGN ++G +AA  +++  PD    Y++LSN++A+AGQW  V ++
Sbjct: 428 MADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKI 487

Query: 542 REMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDT 601
           R+ MK+R   K+ G S IE    +H F VG+ SHPQ  +I+ +L ++ +K+K  G++PDT
Sbjct: 488 RKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDT 547

Query: 602 TQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSG 661
             VL  IE++ +KE  L  HSE++A+AFGLI+     PIRI KNLRVC DCH+  K +S 
Sbjct: 548 DFVLHDIEEE-QKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISM 606

Query: 662 IYNREIIVRDNSRFHHFKNGSCSCKDFW 689
              REI+VRD++RFHH KNG CSC D+W
Sbjct: 607 ATGREIVVRDSNRFHHIKNGVCSCNDYW 634


>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 241/597 (40%), Positives = 360/597 (60%), Gaps = 42/597 (7%)

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAK--FGEIDLGRRVFDAMDDKDLVSW 191
           R   ++E +QIHG + K G   D+   S L++  A    G +   R VFD +   +   W
Sbjct: 27  RCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMW 86

Query: 192 NCLIDGYVKKGEVEVAMKLFDEM-----PDR----------------------------- 217
           N +I GY    E E A+ L+  M     P                               
Sbjct: 87  NTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQIHAHIIK 146

Query: 218 -----DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACEL 272
                ++++   L++ +SK G ++ AR +F ++  R+ VSWN+MI+GY K G+++ A E+
Sbjct: 147 MGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEI 206

Query: 273 FDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVL 332
           F+ M  R++I+W SMI+G    G+  EAL L   M    +  ++  LVS L A A L VL
Sbjct: 207 FNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVL 266

Query: 333 NKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGL 392
           ++G+W+H+YI K+   +D +LG +LI MY+KCG +E A+ VFR + +K V  WTAMI G 
Sbjct: 267 DQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGY 326

Query: 393 GMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT 452
            +HG   +AL+ F KM   G++P  +TF G+L ACSHAGLV++ +  F  M   +G +P+
Sbjct: 327 AIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPS 386

Query: 453 IEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLI 512
           IEHYGC+VD+L R G L+EA+  IE+MP++PN  IW +LL+    HGN ++G+     LI
Sbjct: 387 IEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILI 446

Query: 513 KVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGD 572
           +V P   G Y+ L++I+AAAG+W++ + VR  MK++G  K PG S I   G  HEF+ GD
Sbjct: 447 QVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGD 506

Query: 573 KSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLI 632
           +SHPQ  EI   L ++  +L+  G+ P    +LL +ED++++ A + +HSE+LA+ FGLI
Sbjct: 507 ESHPQIKEIDHMLEQIVERLREEGYKPKLGDLLLDLEDKEKETA-IHHHSEKLAVTFGLI 565

Query: 633 NVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           + K    IRIVKNLRVC DCH+V KL+S +Y REI++RD +RFH FK+G+C+C D+W
Sbjct: 566 STKPGMTIRIVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDGNCTCGDYW 622



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 143/483 (29%), Positives = 239/483 (49%), Gaps = 82/483 (16%)

Query: 3   TQTLQHSSPIHALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSL 62
           T T Q SS  +A Q      LH  +L+  S  +E +Q+H   +KT LI     +S+LL+ 
Sbjct: 7   TPTSQLSSESNAAQT-----LH--LLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAF 59

Query: 63  YVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDN 122
              P+  +L YAR++FDRI + P+  ++N +I+ Y  ++   EAL L+  +L   +  + 
Sbjct: 60  CASPNSGSLAYARTVFDRIFR-PNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNA 118

Query: 123 FTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDA 182
           +T P ++K  + + A +E +QIH  + K+GFG + +  +SL+++Y+K G+I   R +FD 
Sbjct: 119 YTFPFLLKACSSMSASEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQ 178

Query: 183 MDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIF 242
           +D +D VSWN +IDGY K GE+E+A ++F+ MP+R++ SWT ++ G    GK + A  +F
Sbjct: 179 VDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLF 238

Query: 243 YRMP-------NRNLVS---------------W-----------------NAMINGYMKA 263
           +RM        N  LVS               W                   +I+ Y K 
Sbjct: 239 HRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKC 298

Query: 264 GDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSAL 323
           GD++ A E+F  ME + +  W +MI+GY ++GR  EALE    M    V PN  T    L
Sbjct: 299 GDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGIL 358

Query: 324 SAVAGLAVLNKGRWMHSYIVK-NGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKV 382
           +A +   ++++ + +   + + +GF                               K  +
Sbjct: 359 TACSHAGLVHEAKLLFESMERIHGF-------------------------------KPSI 387

Query: 383 GHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNM 442
            H+  M+  LG  G+  +A +L      M +KP A  +  +LNAC   G +  G++   +
Sbjct: 388 EHYGCMVDLLGRAGLLKEAEELIEN---MPVKPNAAIWGALLNACHIHGNLELGKQIGKI 444

Query: 443 MIN 445
           +I 
Sbjct: 445 LIQ 447


>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Vitis vinifera]
          Length = 703

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 243/632 (38%), Positives = 377/632 (59%), Gaps = 13/632 (2%)

Query: 59  LLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFL 118
           L+S YV   +  +  AR  FD + +  ++V +  +++ YV      EA TLF  + ++ +
Sbjct: 84  LISGYVKNRM--VSEARKAFDTMPER-NVVSWTAMVRGYVQEGLVSEAETLFWQMPEKNV 140

Query: 119 LPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRR 178
           +     L  +I+       ++   +  GL F +    D    ++++S Y + G +   R 
Sbjct: 141 VSWTVMLGGLIQ-------VRRIDEARGL-FDIMPVKDVVARTNMISGYCQEGRLAEARE 192

Query: 179 VFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIA 238
           +FD M  ++++SW  +I GYV+ G+V+VA KLF+ MP+++  SWT ++ G+++ G++E A
Sbjct: 193 LFDEMPRRNVISWTTMISGYVQNGQVDVARKLFEVMPEKNEVSWTAMLMGYTQGGRIEEA 252

Query: 239 REIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFM 298
            E+F  MP + +V+ NAMI G+ + G+V  A ++FD +  +D  TW++MI  YE  G  +
Sbjct: 253 SELFDAMPVKAVVACNAMILGFGQNGEVAKARQVFDQIREKDDGTWSAMIKVYERKGFEV 312

Query: 299 EALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLI 358
           EAL L   M    V  N  +L+S LS  A LA L+ GR +H+ +VK+ F  D  + ++LI
Sbjct: 313 EALNLFALMQREGVQSNFPSLISVLSVCASLASLDHGRQVHAELVKSQFDSDVFVASVLI 372

Query: 359 QMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI 418
            MY KCG +  A  +F   S K +  W ++I G   HG+  +AL +F++MC  GM    +
Sbjct: 373 TMYVKCGDLVKARQIFDRFSPKDIVMWNSIITGYAQHGLVEEALQVFHEMCSSGMATDGV 432

Query: 419 TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIES 478
           TF+GVL+ACS+ G V +G   F  M + Y +EP  EHY C+VD+L R G + +A   I+ 
Sbjct: 433 TFVGVLSACSYTGKVKEGLEIFESMKSKYLVEPKTEHYACMVDLLGRAGLVNDAMDLIQK 492

Query: 479 MPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKV 538
           MP+  + +IW +LL   R H N ++ E AA  L+++ P   G Y++LSNIYA+ G+W  V
Sbjct: 493 MPVEADAIIWGALLGACRTHMNMNLAEVAAKKLLQLEPKNAGPYILLSNIYASKGRWGDV 552

Query: 539 SEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVG-DKSHPQTDEIHSKLSEMRNKLKAAGH 597
           +E+R  M+ +   K PG S IE    +H F  G    HP+   I   L ++   L+ AG+
Sbjct: 553 AELRRNMRVKKVSKSPGCSWIEVEKRVHMFTGGVSTKHPELSSIMKMLEKLDGMLREAGY 612

Query: 598 VPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTK 657
            PD++ VL  + D++EK   L +HSERLA+AFGL+ V    PIR++KNLRVC DCHS  K
Sbjct: 613 YPDSSFVLHDV-DEEEKVRSLGHHSERLAVAFGLLKVPEGMPIRVMKNLRVCGDCHSAIK 671

Query: 658 LLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           L++ I  REII+RD +RFHHFK+G CSC+D+W
Sbjct: 672 LIAKITGREIILRDANRFHHFKDGFCSCRDYW 703



 Score =  159 bits (401), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 112/393 (28%), Positives = 181/393 (46%), Gaps = 56/393 (14%)

Query: 161 SSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLF 220
           +S ++ YA+ G+I+  RRVFD M DK +VSWN ++ GY +      A  LFD+MP+R+  
Sbjct: 20  NSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKMPERNTV 79

Query: 221 SWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAG---------------- 264
           SW  L+ G+ K   V  AR+ F  MP RN+VSW AM+ GY++ G                
Sbjct: 80  SWNGLISGYVKNRMVSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQMPEKN 139

Query: 265 ---------------DVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLE---- 305
                           +D A  LFD M ++D++   +MI+GY   GR  EA EL +    
Sbjct: 140 VVSWTVMLGGLIQVRRIDEARGLFDIMPVKDVVARTNMISGYCQEGRLAEARELFDEMPR 199

Query: 306 -------TMLIGDVLPNDATLVSAL-------SAVAGLAVL----NKGRWMHSYIVKNGF 347
                  TM+ G V      +   L       + V+  A+L      GR   +  + +  
Sbjct: 200 RNVISWTTMISGYVQNGQVDVARKLFEVMPEKNEVSWTAMLMGYTQGGRIEEASELFDAM 259

Query: 348 VVDGVLG-TLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFN 406
            V  V+    +I  + + G +  A  VF  I +K  G W+AMI      G   +AL+LF 
Sbjct: 260 PVKAVVACNAMILGFGQNGEVAKARQVFDQIREKDDGTWSAMIKVYERKGFEVEALNLFA 319

Query: 407 KMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRT 466
            M R G++    + I VL+ C+    ++ GR+    ++     +  +     L+ +  + 
Sbjct: 320 LMQREGVQSNFPSLISVLSVCASLASLDHGRQVHAELVKSQ-FDSDVFVASVLITMYVKC 378

Query: 467 GYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
           G L +A+   +    + + V+W S+++G   HG
Sbjct: 379 GDLVKARQIFDRFSPK-DIVMWNSIITGYAQHG 410


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 252/696 (36%), Positives = 375/696 (53%), Gaps = 76/696 (10%)

Query: 70  NLHYARSIFDRI-LQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCV 128
           ++  ARS+F+   +     V+YN +I  +  N   + A+ LFC +      PD+FT   V
Sbjct: 95  DIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDDFTYASV 154

Query: 129 IKGAARL-GAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYA------------------- 168
           + G A +    K+  Q H    K G G+   V ++LVS+Y+                   
Sbjct: 155 LAGLALVVDDEKQCVQFHAAALKSGAGYVTSVSNALVSVYSRCASSPSLLHSARKVFDDI 214

Query: 169 ----------------KFGEIDLGRRVFDAMDDK-DLVSWNCLIDGYVKKGEVEVAMKLF 211
                           K G  DLG+ +   MD+   LV++N +I GYV  G  + A+++ 
Sbjct: 215 PEKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYNAMISGYVNCGLYQEALEMV 274

Query: 212 DEMPD-----------------------------------RDLFSW---TCLVDGFSKCG 233
             M                                     R+ FS+     LV  + KCG
Sbjct: 275 RRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVLRREDFSFHFDNSLVTLYYKCG 334

Query: 234 KVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYEL 293
           K   AR IF +MP ++LVSWNA+++GY+ +G +  A  +F +M+ +++++W  MI+G   
Sbjct: 335 KFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAE 394

Query: 294 NGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVL 353
           NG   E L+L   M      P D     A+ + A L     G+  H+ +VK GF      
Sbjct: 395 NGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQFHAQLVKIGFDSSLSA 454

Query: 354 GTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGM 413
           G  LI MY+KCG +E A  VFR +       W A+I  LG HG   +A+D++ +M + G+
Sbjct: 455 GNALITMYAKCGVVEEAQQVFRTMPCLDSVSWNALIAALGQHGHGVEAVDVYEEMLKKGI 514

Query: 414 KPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAK 473
           +P  ITF+ VL ACSHAGLV+ GR+YFN M   Y I P  +HY  L+D+LCR+G   EA+
Sbjct: 515 RPDRITFLTVLTACSHAGLVDQGRKYFNSMETVYRIPPGADHYARLIDLLCRSGKFSEAE 574

Query: 474 STIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAG 533
           S IES+P +P   IW +LLSG R HGN ++G  AA+ L  + P+  G Y++LSN+YAA G
Sbjct: 575 SIIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMYAATG 634

Query: 534 QWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLK 593
           QW++V+ VR++M+ RG +K+   S IE    +H F+V D SHP+ + ++  L ++  +++
Sbjct: 635 QWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYKYLQDLGKEMR 694

Query: 594 AAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCH 653
             G+VPDT+ VL  +E    KE  L  HSE++A+AFGL+ +   + IRI KNLR C DCH
Sbjct: 695 RLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCH 754

Query: 654 SVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           +  + LS +  R+II+RD  RFHHF+NG CSC +FW
Sbjct: 755 NFFRFLSKVVQRDIILRDRKRFHHFRNGECSCGNFW 790



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 110/503 (21%), Positives = 204/503 (40%), Gaps = 112/503 (22%)

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
           R  +++  + +HG +   GF     +L+ L+ +Y K  E+D  R++FD + + D ++   
Sbjct: 26  RRTSLQLARAVHGNIITFGFQPHAHILNRLIDVYCKSSELDYARQLFDEISEPDKIARTT 85

Query: 194 LIDGYVKKGEVEVAMKLFDEMPD--RDLFSWTCLVDGFSKCGKVEIAREIFYRMPN---- 247
           ++ GY   G++ +A  +F+E P   RD   +  ++ GFS       A  +F +M +    
Sbjct: 86  MVSGYCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFK 145

Query: 248 --------------------RNLVSW----------------NAMINGYMKAGD----VD 267
                               +  V +                NA+++ Y +       + 
Sbjct: 146 PDDFTYASVLAGLALVVDDEKQCVQFHAAALKSGAGYVTSVSNALVSVYSRCASSPSLLH 205

Query: 268 SACELFDDMEIRDLITWNSMIAGYELNGRF------------------------------ 297
           SA ++FDD+  +D  +W +M+ GY  NG F                              
Sbjct: 206 SARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYNAMISGYVNCG 265

Query: 298 --MEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKN---GFVVDGV 352
              EALE++  M+   +  ++ T  S + A A   +L  G+ +H+Y+++     F  D  
Sbjct: 266 LYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVLRREDFSFHFDNS 325

Query: 353 LGTL---------------------------LIQMYSKCGSIESALTVFRAISKKKVGHW 385
           L TL                           L+  Y   G I  A  +F+ + +K +  W
Sbjct: 326 LVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSW 385

Query: 386 TAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN 445
             MI GL  +G   + L LF+ M R G +P    F G + +C+  G   +G+++   ++ 
Sbjct: 386 MIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQFHAQLVK 445

Query: 446 DYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLS--GARNHGNKDI 503
             G + ++     L+ +  + G +EEA+    +MP   + V W +L++  G   HG + +
Sbjct: 446 -IGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCLDS-VSWNALIAALGQHGHGVEAV 503

Query: 504 GEYAANNLIKVAPDTIGCYVVLS 526
             Y       + PD I    VL+
Sbjct: 504 DVYEEMLKKGIRPDRITFLTVLT 526



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 100/402 (24%), Positives = 186/402 (46%), Gaps = 55/402 (13%)

Query: 225 LVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDD--MEIRDLI 282
           L+D + K  +++ AR++F  +   + ++   M++GY  +GD+  A  +F++  + +RD +
Sbjct: 55  LIDVYCKSSELDYARQLFDEISEPDKIARTTMVSGYCASGDIALARSVFEETPVSMRDTV 114

Query: 283 TWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWM--HS 340
            +N+MI G+  N     A+ L   M      P+D T  S L+ +A L V ++ + +  H+
Sbjct: 115 MYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDDFTYASVLAGLA-LVVDDEKQCVQFHA 173

Query: 341 YIVKNGFVVDGVLGTLLIQMYSKCGS----IESALTVFRAISKKKVGHWTAMIVGL---- 392
             +K+G      +   L+ +YS+C S    + SA  VF  I +K    WT M+ G     
Sbjct: 174 AALKSGAGYVTSVSNALVSVYSRCASSPSLLHSARKVFDDIPEKDERSWTTMMTGYVKNG 233

Query: 393 ----------GMH------------------GMATQALDLFNKMCRMGMKPTAITFIGVL 424
                     GM                   G+  +AL++  +M   G++    T+  V+
Sbjct: 234 CFDLGKELLKGMDENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVI 293

Query: 425 NACSHAGLVNDGRRYFNMMINDYGIEPTIEHY-GCLVDILCRTGYLEEAKSTIESMPMRP 483
            AC++A L+  G++    ++     E    H+   LV +  + G   EA++  E MP + 
Sbjct: 294 RACANARLLQLGKQVHAYVLRR---EDFSFHFDNSLVTLYYKCGKFNEARAIFEKMPAK- 349

Query: 484 NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVRE 543
           + V W +LLSG  + G+  IGE A     ++    I  ++++ +  A  G  ++  ++  
Sbjct: 350 DLVSWNALLSGYVSSGH--IGE-AKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFS 406

Query: 544 MMKKRGFRKDPG----SSSIEHRGVLHEFVVGDKSHPQTDEI 581
            MK+ GF  +P     S +I+   VL  +  G + H Q  +I
Sbjct: 407 CMKREGF--EPCDYAFSGAIKSCAVLGAYCNGQQFHAQLVKI 446


>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
 gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
          Length = 706

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 239/606 (39%), Positives = 361/606 (59%), Gaps = 10/606 (1%)

Query: 85  PSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQI 144
           PS+V +  L++ YV +    +A+ LF  + +R    ++ +   ++ G    G + E +++
Sbjct: 110 PSVVSFTSLLRGYVRHGLLADAIRLFQQMPER----NHVSYTVLLGGLLDAGRVNEARRL 165

Query: 145 HGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEV 204
               F      D    ++++S Y + G I   R +FD M  +++VSW  +I GY + GEV
Sbjct: 166 ----FDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEV 221

Query: 205 EVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAG 264
            +A KLF+ MP+R+  SWT ++ G+ + G VE A E+F  MP   + + NAM+ G+ + G
Sbjct: 222 NLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRG 281

Query: 265 DVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS 324
            VD+A  +F+ M  RD  TW++MI  YE N   MEAL     ML   V PN  +++S L+
Sbjct: 282 MVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILT 341

Query: 325 AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGH 384
             A LAVL+ GR +H+ +++  F +D    + LI MY KCG+++ A  VF     K +  
Sbjct: 342 VCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVM 401

Query: 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMI 444
           W +MI G   HG+  QAL +F+ M   GM P  IT+IG L ACS+ G V +GR  FN M 
Sbjct: 402 WNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMT 461

Query: 445 NDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIG 504
            +  I P  EHY C+VD+L R+G +EEA   I++MP+ P+ VIW +L+   R H N +I 
Sbjct: 462 VNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIA 521

Query: 505 EYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGV 564
           E+AA  L+++ P   G YV+LS+IY + G+W+  S++R+ +  R   K PG S IE+   
Sbjct: 522 EFAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKR 581

Query: 565 LHEFVVGDK-SHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSE 623
           +H F  GD  +HP+   I   L ++   L  +G+  D + VL  I D+++K   L  HSE
Sbjct: 582 VHLFTSGDVLAHPEHAAILRILEKLDGLLMESGYSADGSFVLHDI-DEEQKSHSLRYHSE 640

Query: 624 RLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSC 683
           R A+A+GL+ +    PIR++KNLRVC DCHS  KL++ I +REII+RD +RFHHFK+G C
Sbjct: 641 RQAVAYGLLKIPEGMPIRVMKNLRVCGDCHSAIKLIAKITSREIILRDANRFHHFKDGFC 700

Query: 684 SCKDFW 689
           SC+D+W
Sbjct: 701 SCRDYW 706



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 113/421 (26%), Positives = 194/421 (46%), Gaps = 53/421 (12%)

Query: 161 SSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLID------------------------ 196
           ++L++ Y +    D    +F  M  +DL S+N LI                         
Sbjct: 52  NALLAGYFRNRLPDAALGLFRRMPSRDLASYNALISGLSLRRQTLPDAAAALASIPFPPS 111

Query: 197 ---------GYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPN 247
                    GYV+ G +  A++LF +MP+R+  S+T L+ G    G+V  AR +F  MP+
Sbjct: 112 VVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMPD 171

Query: 248 RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETM 307
           R++V+W AM++GY +AG +  A  LFD+M  R++++W +MI+GY  NG    A +L E M
Sbjct: 172 RDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVM 231

Query: 308 LIGDVLPNDATLVSALSA--VAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCG 365
              + +   A LV  + A  V   A L      H     N  +V           + + G
Sbjct: 232 PERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVG----------FGQRG 281

Query: 366 SIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN 425
            +++A TVF  + ++  G W+AMI     +    +AL  F +M   G++P   + I +L 
Sbjct: 282 MVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILT 341

Query: 426 ACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNF 485
            C+   +++ GR     M+     +  +     L+ +  + G L++AK    +   + + 
Sbjct: 342 VCAALAVLDYGREVHAAMLR-CSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPK-DI 399

Query: 486 VIWMSLLSGARNH--GNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVRE 543
           V+W S+++G   H  G + +G +    L  ++PD I     L+    A     KV E RE
Sbjct: 400 VMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALT----ACSYTGKVKEGRE 455

Query: 544 M 544
           +
Sbjct: 456 I 456



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 117/260 (45%), Gaps = 25/260 (9%)

Query: 229 FSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMI 288
            ++ G +E AR  F  MP R   S+NA++ GY +    D+A  LF  M  RDL ++N++I
Sbjct: 27  LARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYNALI 86

Query: 289 AGYELNGRFM-EALELLETMLIGDVLPNDATLVSALSAVAGLA----VLNKGRWMHSYIV 343
           +G  L  + + +A   L +      +P   ++VS  S + G      + +  R       
Sbjct: 87  SGLSLRRQTLPDAAAALAS------IPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140

Query: 344 KNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALD 403
           +N      +LG LL       G +  A  +F  +  + V  WTAM+ G    G  T+A  
Sbjct: 141 RNHVSYTVLLGGLL-----DAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARA 195

Query: 404 LFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDIL 463
           LF++M     K   +++  +++  +  G VN  R+ F +M     +  T    G +    
Sbjct: 196 LFDEMP----KRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYI---- 247

Query: 464 CRTGYLEEAKSTIESMPMRP 483
            + G++E+A     +MP  P
Sbjct: 248 -QAGHVEDAAELFNAMPEHP 266


>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
          Length = 798

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 239/606 (39%), Positives = 361/606 (59%), Gaps = 10/606 (1%)

Query: 85  PSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQI 144
           PS+V +  L++ YV +    +A+ LF  + +R    ++ +   ++ G    G + E +++
Sbjct: 110 PSVVSFTSLLRGYVRHGLLADAIRLFQQMPER----NHVSYTVLLGGLLDAGRVNEARRL 165

Query: 145 HGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEV 204
               F      D    ++++S Y + G I   R +FD M  +++VSW  +I GY + GEV
Sbjct: 166 ----FDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEV 221

Query: 205 EVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAG 264
            +A KLF+ MP+R+  SWT ++ G+ + G VE A E+F  MP   + + NAM+ G+ + G
Sbjct: 222 NLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRG 281

Query: 265 DVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS 324
            VD+A  +F+ M  RD  TW++MI  YE N   MEAL     ML   V PN  +++S L+
Sbjct: 282 MVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILT 341

Query: 325 AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGH 384
             A LAVL+ GR +H+ +++  F +D    + LI MY KCG+++ A  VF     K +  
Sbjct: 342 VCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVM 401

Query: 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMI 444
           W +MI G   HG+  QAL +F+ M   GM P  IT+IG L ACS+ G V +GR  FN M 
Sbjct: 402 WNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMT 461

Query: 445 NDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIG 504
            +  I P  EHY C+VD+L R+G +EEA   I++MP+ P+ VIW +L+   R H N +I 
Sbjct: 462 VNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIA 521

Query: 505 EYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGV 564
           E+AA  L+++ P   G YV+LS+IY + G+W+  S++R+ +  R   K PG S IE+   
Sbjct: 522 EFAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKR 581

Query: 565 LHEFVVGDK-SHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSE 623
           +H F  GD  +HP+   I   L ++   L  +G+  D + VL  I D+++K   L  HSE
Sbjct: 582 VHLFTSGDVLAHPEHAAILRILEKLDGLLMESGYSADGSFVLHDI-DEEQKSHSLRYHSE 640

Query: 624 RLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSC 683
           R A+A+GL+ +    PIR++KNLRVC DCHS  KL++ I +REII+RD +RFHHFK+G C
Sbjct: 641 RQAVAYGLLKIPEGMPIRVMKNLRVCGDCHSAIKLIAKITSREIILRDANRFHHFKDGFC 700

Query: 684 SCKDFW 689
           SC+D+W
Sbjct: 701 SCRDYW 706



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 113/421 (26%), Positives = 194/421 (46%), Gaps = 53/421 (12%)

Query: 161 SSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLID------------------------ 196
           ++L++ Y +    D    +F  M  +DL S+N LI                         
Sbjct: 52  NALLAGYFRNRLPDAALGLFRRMPSRDLASYNALISGLSLRRQTLPDAAAALASIPFPPS 111

Query: 197 ---------GYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPN 247
                    GYV+ G +  A++LF +MP+R+  S+T L+ G    G+V  AR +F  MP+
Sbjct: 112 VVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMPD 171

Query: 248 RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETM 307
           R++V+W AM++GY +AG +  A  LFD+M  R++++W +MI+GY  NG    A +L E M
Sbjct: 172 RDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVM 231

Query: 308 LIGDVLPNDATLVSALSA--VAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCG 365
              + +   A LV  + A  V   A L      H     N  +V           + + G
Sbjct: 232 PERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVG----------FGQRG 281

Query: 366 SIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN 425
            +++A TVF  + ++  G W+AMI     +    +AL  F +M   G++P   + I +L 
Sbjct: 282 MVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILT 341

Query: 426 ACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNF 485
            C+   +++ GR     M+     +  +     L+ +  + G L++AK    +   + + 
Sbjct: 342 VCAALAVLDYGREVHAAMLR-CSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPK-DI 399

Query: 486 VIWMSLLSGARNH--GNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVRE 543
           V+W S+++G   H  G + +G +    L  ++PD I     L+    A     KV E RE
Sbjct: 400 VMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALT----ACSYTGKVKEGRE 455

Query: 544 M 544
           +
Sbjct: 456 I 456



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 117/260 (45%), Gaps = 25/260 (9%)

Query: 229 FSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMI 288
            ++ G +E AR  F  MP R   S+NA++ GY +    D+A  LF  M  RDL ++N++I
Sbjct: 27  LARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYNALI 86

Query: 289 AGYELNGRFM-EALELLETMLIGDVLPNDATLVSALSAVAGLA----VLNKGRWMHSYIV 343
           +G  L  + + +A   L +      +P   ++VS  S + G      + +  R       
Sbjct: 87  SGLSLRRQTLPDAAAALAS------IPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140

Query: 344 KNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALD 403
           +N      +LG LL       G +  A  +F  +  + V  WTAM+ G    G  T+A  
Sbjct: 141 RNHVSYTVLLGGLL-----DAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARA 195

Query: 404 LFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDIL 463
           LF++M     K   +++  +++  +  G VN  R+ F +M     +  T    G +    
Sbjct: 196 LFDEMP----KRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYI---- 247

Query: 464 CRTGYLEEAKSTIESMPMRP 483
            + G++E+A     +MP  P
Sbjct: 248 -QAGHVEDAAELFNAMPEHP 266


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  457 bits (1176), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 236/628 (37%), Positives = 375/628 (59%), Gaps = 14/628 (2%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           A  +FD++ +  +LV + L+I  +     + +A+ LF D+     +PD FT   V+    
Sbjct: 4   AYKVFDKMPER-NLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACT 62

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKF---GEIDLGRRVFDAMDDKDLVS 190
            LG +  GKQ+H  V +LG   D  V  SLV MYAK    G +D  R+VF+ M + +++S
Sbjct: 63  ELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMS 122

Query: 191 WNCLIDGYVKKGEVEV-AMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRM 245
           W  +I  Y + GE +  A++LF +M    +    FS++ ++             +++   
Sbjct: 123 WTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYA 182

Query: 246 PNRNLVS----WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEAL 301
               + S     N++I+ Y ++G ++ A + FD +  ++L+++N+++ GY  N +  EA 
Sbjct: 183 VKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAF 242

Query: 302 ELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMY 361
            L   +    +  +  T  S LS  A +  + KG  +H  ++K G+  +  +   LI MY
Sbjct: 243 LLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMY 302

Query: 362 SKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFI 421
           S+CG+IE+A  VF  +  + V  WT+MI G   HG AT+AL++F+KM   G KP  IT++
Sbjct: 303 SRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYV 362

Query: 422 GVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPM 481
            VL+ACSH G++++G+++FN M  ++GI P +EHY C+VD+L R+G L EA   I SMP+
Sbjct: 363 AVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPL 422

Query: 482 RPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEV 541
             + ++W +LL   R HGN ++G +AA  +++  PD    Y++LSN++A+AGQW  V ++
Sbjct: 423 MADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKI 482

Query: 542 REMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDT 601
           R+ MK+R   K+ G S IE    +H F VG+ SHPQ  +I+ +L ++ +K+K  G++PDT
Sbjct: 483 RKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDT 542

Query: 602 TQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSG 661
             VL  IE++ +KE  L  HSE++A+AFGLI+     PIRI KNLRVC DCH+  K +S 
Sbjct: 543 DFVLHDIEEE-QKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISM 601

Query: 662 IYNREIIVRDNSRFHHFKNGSCSCKDFW 689
              REI+VRD++RFHH KNG CSC D+W
Sbjct: 602 ATGREIVVRDSNRFHHIKNGVCSCNDYW 629


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 262/710 (36%), Positives = 414/710 (58%), Gaps = 27/710 (3%)

Query: 1   MQTQTLQHSSPIHALQQHLPSRLHW--NILKFSSTHKETQQLHA-LSVKTNLIYHSGISS 57
           ++++ L H S  H +   LPS  H+  ++L+  ++    + +H+ LS +  L++     +
Sbjct: 4   LKSRALHHLSHTHKVLA-LPSLHHFYDHLLQCCTSLTTLKLIHSSLSTRGFLLHTPHFLA 62

Query: 58  RLLSLYVDPHINNLHYARSIFDRIL-------QHPSLVLYNLLIKCYVFNQRSHEALTLF 110
           RL+ LY    + +LH AR++FD          Q P+  L N +++ Y    RS+EA+ L+
Sbjct: 63  RLIILY--SKLGDLHSARTLFDHRHHHHHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLY 120

Query: 111 CDLLDRFLLPDNFTLPCVIK-GAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAK 169
             +    +  +NFT P V+K  A+ LGA+  G+ +HG V + GFG D FV ++LV MYAK
Sbjct: 121 IYMQRMGVGVNNFTYPFVLKVCASELGAVF-GEVVHGQVVRTGFGSDLFVEAALVDMYAK 179

Query: 170 FGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCL 225
            GEI     VFD M  +D+V W  +I  Y +      A+ LF +M +     D  +   +
Sbjct: 180 CGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISV 239

Query: 226 VDGFSKCGKVEIAREIF-YRMPNR---NLVSWNAMINGYMKAGDVDSACELFDDMEIRDL 281
                + G   +A  +  Y + N    ++   N+++  Y K G+V+ A  +FD ME R+ 
Sbjct: 240 ASAVGQLGDGRMAISVHGYAVLNGFIGDVSVGNSIVGMYAKCGNVERARLVFDRMEERNG 299

Query: 282 ITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSY 341
           I+WNSM++GY  NGR  +AL L   M   +  PN  T +  +SA + L   + GR +H++
Sbjct: 300 ISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNF 359

Query: 342 IVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFR--AISKKKVGHWTAMIVGLGMHGMAT 399
           ++ +   +D  L   ++ MY KCG +++A+ +F    + ++ V  W  +I G G+HG   
Sbjct: 360 VISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGK 419

Query: 400 QALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCL 459
           +AL+LF++M   G++P  ITF  +L+ACSHAGL+++GR+ F  M     + P ++HY C+
Sbjct: 420 EALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADM-TKLSVRPEMKHYACM 478

Query: 460 VDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTI 519
           VD+L R G+L EA   I+ +P RP+  +W +LL   R HGN ++GE AANNL ++ P+  
Sbjct: 479 VDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTELGEIAANNLFQLEPEHT 538

Query: 520 GCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTD 579
           G YV++SNIYAA+ +W +V  VR+ MK RG +K    S IE    +H F   D+S P   
Sbjct: 539 GYYVLMSNIYAASNKWKEVEMVRQNMKSRGLKKPAAFSVIEFGTEVHGFHTADQSSPYYR 598

Query: 580 EIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSP 639
           E++ K+  +  ++K  G+VPD + VL  +E + +KE  L  HSE+LA+AFG++ +    P
Sbjct: 599 EVYRKVESLAIEMKMVGYVPDLSCVLHDVEPE-DKEHLLNYHSEKLAVAFGIMKMDQGMP 657

Query: 640 IRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           I++ KNLRVC+DCH   K +S IY R+IIVRD +RFHHF+ G CSC D+W
Sbjct: 658 IQVTKNLRVCSDCHWAFKFISSIYGRKIIVRDGNRFHHFQGGRCSCGDYW 707


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 240/648 (37%), Positives = 391/648 (60%), Gaps = 17/648 (2%)

Query: 55  ISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL 114
           +   L+ ++V  +  +L  A  +FDR +   ++V + L+I  +     S +A+ LF D++
Sbjct: 80  VGCALIDMFVKGN-GDLESAYKVFDR-MPDRNVVTWTLMITRFQQLGFSRDAVDLFLDMV 137

Query: 115 DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKF---G 171
               +PD FTL  V+   A +G +  G+Q H LV K G   D  V  SLV MYAK    G
Sbjct: 138 LSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADG 197

Query: 172 EIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVE-VAMKLFDEMPDRDL----FSWTCLV 226
            +D  R+VFD M   +++SW  +I GYV+ G  +  A++LF EM    +    F+++ ++
Sbjct: 198 SVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVL 257

Query: 227 DGFSKCGKVEIAREIF-----YRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDL 281
              +    + +  +++      R+ + N V  N++I+ Y + G++++A + FD +  ++L
Sbjct: 258 KACANLSDIWLGEQVYALVVKMRLASINCVG-NSLISMYSRCGNMENARKAFDVLFEKNL 316

Query: 282 ITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSY 341
           +++N+++  Y  +    EA EL   +       N  T  S LS  + +  + KG  +HS 
Sbjct: 317 VSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSR 376

Query: 342 IVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQA 401
           I+K+GF  +  +   LI MYS+CG+IE+A  VF  +    V  WT+MI G   HG AT+A
Sbjct: 377 ILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMGDGNVISWTSMITGFAKHGFATRA 436

Query: 402 LDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVD 461
           L+ F+KM   G+ P  +T+I VL+ACSH GL+++G ++F  M  ++GI P +EHY C+VD
Sbjct: 437 LETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEHGIVPRMEHYACVVD 496

Query: 462 ILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGC 521
           +L R+G+LEEA   + SMP + + ++  + L   R HGN D+G++AA  +++  P     
Sbjct: 497 LLGRSGHLEEAMELVNSMPFKADALVLRTFLGACRVHGNMDLGKHAAEMILEQDPHDPAA 556

Query: 522 YVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEI 581
           Y++LSN++A+AGQW++V+E+R+ MK+R   K+ G S IE    +H+F VGD SHPQ  EI
Sbjct: 557 YILLSNLHASAGQWEEVAEIRKKMKERNLTKEAGCSWIEVENKVHKFYVGDTSHPQAQEI 616

Query: 582 HSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIR 641
           + +L ++  K+K  G++P T  VL  +E++ +KE  L  HSE++A+A+G I+  +  PIR
Sbjct: 617 YDELDQLALKIKELGYIPSTDFVLHDVEEE-QKEQYLFQHSEKIAVAYGFISTSTSRPIR 675

Query: 642 IVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           + KNLRVC DCH+  K  S +  +EI++RD +RFHHFK+G+CSC D+W
Sbjct: 676 VFKNLRVCGDCHTAFKYFSIVRRKEIVLRDANRFHHFKDGTCSCNDYW 723



 Score =  162 bits (409), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 122/457 (26%), Positives = 204/457 (44%), Gaps = 76/457 (16%)

Query: 87  LVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHG 146
           LV ++ LI CY  N+++ EA++ F D+L+    P+ +    V +  +    I  GK I G
Sbjct: 7   LVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKIIFG 66

Query: 147 LVFKLG-FGFDKFVLSSLVSMYAKF-GEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEV 204
            + K G F  D  V  +L+ M+ K  G+++   +VFD M D+++V+W  +I  + + G  
Sbjct: 67  FLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLGFS 126

Query: 205 EVAMKLFDEM------PDR---------------------------------DLFSWTCL 225
             A+ LF +M      PDR                                 D+     L
Sbjct: 127 RDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSL 186

Query: 226 VDGFSKC---GKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLI 282
           VD ++KC   G V+ AR++F RMP  N++SW A+I GY+++G  D               
Sbjct: 187 VDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDR-------------- 232

Query: 283 TWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYI 342
                           EA+EL   M+ G V PN  T  S L A A L+ +  G  +++ +
Sbjct: 233 ----------------EAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYALV 276

Query: 343 VKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQAL 402
           VK        +G  LI MYS+CG++E+A   F  + +K +  +  ++        + +A 
Sbjct: 277 VKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAF 336

Query: 403 DLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDI 462
           +LFN++   G    A TF  +L+  S  G +  G +  + ++   G +  +     L+ +
Sbjct: 337 ELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKS-GFKSNLHICNALISM 395

Query: 463 LCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
             R G +E A      M    N + W S+++G   HG
Sbjct: 396 YSRCGNIEAAFQVFNEMG-DGNVISWTSMITGFAKHG 431



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 99/390 (25%), Positives = 187/390 (47%), Gaps = 27/390 (6%)

Query: 184 DDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLF-SWTCLVDGFSKCGKVE---IAR 239
           + +DLVSW+ LI  Y    +   A+  F +M +   + +  C    F  C   E   + +
Sbjct: 3   NKRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGK 62

Query: 240 EIFYRMPNRNLVSWN-----AMINGYMKA-GDVDSACELFDDMEIRDLITWNSMIAGYEL 293
            IF  +        +     A+I+ ++K  GD++SA ++FD M  R+++TW  MI  ++ 
Sbjct: 63  IIFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQ 122

Query: 294 NGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVL 353
            G   +A++L   M++   +P+  TL   +SA A + +L+ GR  H  ++K+G  +D  +
Sbjct: 123 LGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCV 182

Query: 354 GTLLIQMYSKC---GSIESALTVFRAISKKKVGHWTAMIVG-LGMHGMATQALDLFNKMC 409
           G  L+ MY+KC   GS++ A  VF  +    V  WTA+I G +   G   +A++LF +M 
Sbjct: 183 GCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMV 242

Query: 410 RMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGC----LVDILCR 465
           +  +KP   TF  VL AC++   +  G + + ++     ++  +    C    L+ +  R
Sbjct: 243 QGQVKPNHFTFSSVLKACANLSDIWLGEQVYALV-----VKMRLASINCVGNSLISMYSR 297

Query: 466 TGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVL 525
            G +E A+   + +    N V + ++++      N +   +   N I+ A   +  +   
Sbjct: 298 CGNMENARKAFDVL-FEKNLVSYNTIVNAYAKSLNSEEA-FELFNEIEGAGTGVNAFTFA 355

Query: 526 SNIYAAA--GQWDKVSEVREMMKKRGFRKD 553
           S +  A+  G   K  ++   + K GF+ +
Sbjct: 356 SLLSGASSIGAIGKGEQIHSRILKSGFKSN 385


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 243/622 (39%), Positives = 360/622 (57%), Gaps = 8/622 (1%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLP-DNFTLPCVIKGA 132
           AR +FDR+ +  + +L+N +I  Y  N+   E++ +F DL++      D  TL  ++   
Sbjct: 173 ARKVFDRMPEKDT-ILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAV 231

Query: 133 ARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWN 192
           A L  ++ G QIH L  K G     +VL+  +S+Y+K G+I +   +F      D+V++N
Sbjct: 232 AELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMASTLFREFRRPDIVAYN 291

Query: 193 CLIDGYVKKGEVEVAMKLFDE-MPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLV 251
            +I GY   GE E+++ LF E M        + LV      G + +   I       N +
Sbjct: 292 AMIHGYTSNGETELSLSLFKELMLSGAKLKSSTLVSLVPVSGHLMLIYAIHGYSLKSNFL 351

Query: 252 SWN----AMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETM 307
           S      A+   Y K  +++SA +LFD+   + L +WN+MI+GY  NG   +A+ L   M
Sbjct: 352 SHTSVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREM 411

Query: 308 LIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSI 367
              +  PN  T+   LSA A L  L+ G+W+H  +    F     + T LI MY+KCGSI
Sbjct: 412 QNSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSI 471

Query: 368 ESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNAC 427
             A  +F  + KK    W  MI G G+HG   +AL +F++M   G+ PT +TF+ VL AC
Sbjct: 472 AEARRLFDFMPKKNEVTWNTMISGYGLHGHGQEALTIFSEMLNSGIAPTPVTFLCVLYAC 531

Query: 428 SHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVI 487
           SHAGLV +G   FN MI+ YG EP+++HY C+VDIL R G+L+ A   IE+MP++P   +
Sbjct: 532 SHAGLVKEGDEIFNSMIHRYGFEPSVKHYACVVDILGRAGHLQRALQFIEAMPIQPGPSV 591

Query: 488 WMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547
           W +LL   R H + ++    +  L ++ PD +G +V+LSNI++A   + + + VR+  KK
Sbjct: 592 WETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKK 651

Query: 548 RGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLC 607
           R   K PG + IE     H F  GD+SHPQ   IH KL ++  K++ AG+ P+T   L  
Sbjct: 652 RKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKAIHEKLEKLEGKMREAGYQPETELALHD 711

Query: 608 IEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREI 667
           +E++ E+E  ++ HSERLAIAFGLI  +  + IRI+KNLRVC DCH+ TKL+S I  R I
Sbjct: 712 VEEE-ERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTATKLISKITERVI 770

Query: 668 IVRDNSRFHHFKNGSCSCKDFW 689
           +VRD +RFHHFK+G CSC D+W
Sbjct: 771 VVRDANRFHHFKDGVCSCGDYW 792



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 138/526 (26%), Positives = 245/526 (46%), Gaps = 38/526 (7%)

Query: 71  LHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRF-LLPDNFTLPCVI 129
           ++YAR IF  + Q P + L+N+L++ +  N+  H +L +F  L     L P++ T    I
Sbjct: 68  IYYARDIFLSV-QRPDVFLFNVLMRGFSVNESPHSSLAVFAHLRKSTDLKPNSSTYAFAI 126

Query: 130 KGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLV 189
             A+     + G  IHG     G   +  + S++V MY KF  ++  R+VFD M +KD +
Sbjct: 127 SAASGFRDDRAGCVIHGQAIVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTI 186

Query: 190 SWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTC----------LVDGFSKCGKVEIAR 239
            WN +I GY K      ++++F     RDL + +C          ++   ++  ++ +  
Sbjct: 187 LWNTMISGYRKNEMYVESIQVF-----RDLINESCTRLDTTTLLDILPAVAELQELRLGM 241

Query: 240 EIFYRMPNRNLVSWNAMING----YMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNG 295
           +I          S + ++ G    Y K G +  A  LF +    D++ +N+MI GY  NG
Sbjct: 242 QIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNG 301

Query: 296 RFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGT 355
               +L L + +++       +TLVS L  V+G  +L     +H Y +K+ F+    + T
Sbjct: 302 ETELSLSLFKELMLSGAKLKSSTLVS-LVPVSGHLMLIYA--IHGYSLKSNFLSHTSVST 358

Query: 356 LLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKP 415
            L  +YSK   IESA  +F    +K +  W AMI G   +G+   A+ LF +M      P
Sbjct: 359 ALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSP 418

Query: 416 TAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKST 475
             +T   +L+AC+  G ++ G ++ + ++     E +I     L+ +  + G + EA+  
Sbjct: 419 NPVTITCILSACAQLGALSLG-KWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRL 477

Query: 476 IESMPMRPNFVIWMSLLSGARNHGNKD----IGEYAANNLIKVAPDTIGCYVVLSNIYAA 531
            + MP + N V W +++SG   HG+      I     N+ I   P T  C +   +    
Sbjct: 478 FDFMP-KKNEVTWNTMISGYGLHGHGQEALTIFSEMLNSGIAPTPVTFLCVLYACSHAGL 536

Query: 532 AGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQ 577
             + D++     M+ + GF       S++H   + + ++G   H Q
Sbjct: 537 VKEGDEI--FNSMIHRYGFEP-----SVKHYACVVD-ILGRAGHLQ 574


>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 238/617 (38%), Positives = 363/617 (58%), Gaps = 48/617 (7%)

Query: 91  NLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFK 150
           N LI C+       +A    C + +   + D+ +   ++ G   +G ++E K I+  + +
Sbjct: 117 NTLINCFSVCSNMTDA----CRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPE 172

Query: 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
                     +S++ ++   G +    ++FD M +KD+V+W+ LI  + +    E A++ 
Sbjct: 173 RSI----IASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRT 228

Query: 211 F----------DEMPDRDLFS-----------------------------WTCLVDGFSK 231
           F          DE+      S                                L+  +SK
Sbjct: 229 FVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSK 288

Query: 232 CGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGY 291
           CG + +AR++F      +L+SWN+MI+GY+K   VD+A  +FD M  +D+++W+SMI+GY
Sbjct: 289 CGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGY 348

Query: 292 ELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDG 351
             N  F E L L + M +    P++ TLVS +SA A LA L +G+W+H+YI +NG  ++ 
Sbjct: 349 AQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINV 408

Query: 352 VLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRM 411
           +LGT LI MY KCG +E+AL VF  + +K +  W A+I+GL M+G+   +LD+F+ M + 
Sbjct: 409 ILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKC 468

Query: 412 GMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEE 471
            + P  ITF+GVL AC H GLV++G+ +F  MI+D+ I+P ++HYGC+VD+L R G L+E
Sbjct: 469 HVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQE 528

Query: 472 AKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAA 531
           A+  +  MPM P+   W +LL   + HG+ ++G      LI++ PD  G +V+LSNIYA+
Sbjct: 529 AEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYAS 588

Query: 532 AGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNK 591
            G+WD V E+R MM K    K PG S IE  GV+HEF+ GDK+HP  D I   L EM  K
Sbjct: 589 KGKWDDVLEIRGMMTKHRVLKIPGCSMIEANGVIHEFLAGDKTHPDMDAIEDMLVEMAMK 648

Query: 592 LKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCND 651
           LK  G+ PD  +VLL + D++EKE+ L  HSE+LAIAFGLIN+   +PIRI+KNLR+CND
Sbjct: 649 LKLEGYTPDINEVLLDV-DEEEKESTLFRHSEKLAIAFGLINISPPTPIRIMKNLRICND 707

Query: 652 CHSVTKLLSGIYNREII 668
           CH+  KL+S  + R+I+
Sbjct: 708 CHTAAKLISKAFCRKIV 724



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 147/579 (25%), Positives = 253/579 (43%), Gaps = 107/579 (18%)

Query: 47  TNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEA 106
           T  I  +  +SRL+         ++ Y R IF+ I ++ +  ++N++I+ Y+     H A
Sbjct: 4   TGFIRETYAASRLIKFSTHFPFIHIDYTRRIFNFI-ENTNCFMWNMMIRAYIQTNSPHFA 62

Query: 107 LTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSM 166
            TL+  +L  +L  DN+T P +I+  +   +  E KQ+H  V KLGF  D +V ++L++ 
Sbjct: 63  FTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINC 122

Query: 167 YAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLV 226
           ++    +    RVF+     D VSWN ++ GY++ G VE A  ++ +MP+R + +   ++
Sbjct: 123 FSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMI 182

Query: 227 DGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNS 286
             F   G V  A ++F  M  +++V+W+A+I           AC                
Sbjct: 183 VLFGMRGLVVEACKLFDEMLEKDMVTWSALI-----------AC---------------- 215

Query: 287 MIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNG 346
               ++ N  + EA+     M    V+ ++   VSALSA A L V+N G+ +HS  +K G
Sbjct: 216 ----FQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIG 271

Query: 347 FVVDGVLGTLLIQMYSKCGSI-------------------------------ESALTVFR 375
                 L   LI MYSKCG I                               ++A  +F 
Sbjct: 272 TESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFD 331

Query: 376 AISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVND 435
           ++ +K V  W++MI G   + +  + L LF +M   G KP   T + V++AC+    +  
Sbjct: 332 SMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQ 391

Query: 436 GR------RYFNMMIND-----------------------YG-IEPTIEHYGCLVDILCR 465
           G+      +   + IN                        YG IE  I  +  L+  L  
Sbjct: 392 GKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAM 451

Query: 466 TGYLEEAKSTIESMP---MRPNFVIWMSLLSGARNHGNKDIGEYAANNLI---KVAPDT- 518
            G +E +     +M    + PN + +M +L   R+ G  D G++   ++I   K+ P+  
Sbjct: 452 NGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVK 511

Query: 519 -IGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGS 556
             GC V L       G+  K+ E  E++ +     D  +
Sbjct: 512 HYGCMVDL------LGRAGKLQEAEELLNRMPMTPDVAT 544



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 102/233 (43%), Gaps = 42/233 (18%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           A++IFD  +    +V ++ +I  Y  N    E L LF ++      PD  TL  VI   A
Sbjct: 326 AKAIFDS-MPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACA 384

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
           RL A+++GK +H  + + G   +  + ++L+ MY K G ++    VF  M +K + +WN 
Sbjct: 385 RLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNA 444

Query: 194 LIDGYVKKGEVEVAMKLFDEM------PDRDLF--------------------------- 220
           LI G    G VE ++ +F  M      P+   F                           
Sbjct: 445 LILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDH 504

Query: 221 -------SWTCLVDGFSKCGKVEIAREIFYRMP-NRNLVSWNAMINGYMKAGD 265
                   + C+VD   + GK++ A E+  RMP   ++ +W A++    K GD
Sbjct: 505 KIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGD 557


>gi|224129982|ref|XP_002320719.1| predicted protein [Populus trichocarpa]
 gi|222861492|gb|EEE99034.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 253/608 (41%), Positives = 359/608 (59%), Gaps = 46/608 (7%)

Query: 27  ILKFSSTHKETQQLHALSVKTNLIYHSGISSRL-LSLYVDPHINNLHYARSIFDR----- 80
           +LK      +  Q+HA  + T  I ++ +++++ LS     H   + +AR IF R     
Sbjct: 21  LLKKCKRLSDINQIHARLLTTGFIKNTFLTTKIILSFSTSLHAPLIEFARFIFFRHHAFE 80

Query: 81  -----ILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARL 135
                  +     L+N +IK Y       EA+ L   +L+     D FTL  V+K  +R+
Sbjct: 81  FDEKEEEEEKDPFLWNAIIKTYSHGHDPKEAMWLVSLMLENGAFADKFTLSLVLKACSRV 140

Query: 136 GAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLI 195
           G +KEG QIHGL+ KL FG D F+ + L+S Y K G +    +VFD M  +D VS+N +I
Sbjct: 141 GLVKEGMQIHGLLKKLEFGSDLFLQNCLISFYVKCGCLVRASQVFDRMPKRDSVSYNSMI 200

Query: 196 DGYVKKGEVE----------------------------------VAMKLFDEMPDRDLFS 221
           DGYVK G ++                                  VA +LF +MP+RDL S
Sbjct: 201 DGYVKGGRIDLARVVFDCIPLEERNLISWNSLIRGYAQSEDGILVAWQLFAKMPERDLIS 260

Query: 222 WTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDL 281
           W  ++DG  KCG++E A+ +F RMPNR++VSW  MI+GY K G VD A  LFD+M  RD+
Sbjct: 261 WNSMIDGCVKCGRMEDAQGLFDRMPNRDIVSWANMIDGYAKNGRVDIARSLFDEMPERDV 320

Query: 282 ITWNSMIAGYELNGRFMEALELLETMLI-GDVLPNDATLVSALSAVAGLAVLNKGRWMHS 340
           + +N+M+ GY  NG  MEAL +   M   G+ L ++ATL+ ALSA+A L  ++KG  +H 
Sbjct: 321 VAYNAMMGGYVQNGYCMEALGIFYGMQSDGNFLLDNATLLIALSAIAQLGHIDKGVAIHR 380

Query: 341 YIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQ 400
           +I + GF +DG LG  LI MYSKCGSIE+A+ VF  I +K V HW A+I GL +HG+   
Sbjct: 381 FIEEIGFSLDGRLGVALIDMYSKCGSIENAMMVFENIKEKSVDHWNAIIGGLAIHGLGEL 440

Query: 401 ALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLV 460
           A D   +M RM ++P  ITFIG+LNAC HAGLV +G   F +M   + +EP ++HYGC+V
Sbjct: 441 AFDFLMEMERMRVEPDDITFIGLLNACGHAGLVKEGMMCFELMRRVHKVEPKLQHYGCMV 500

Query: 461 DILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIG 520
           DIL R G++EEAK+ +E MP  PN VIW SLLS  + H + ++G+  A NL+++   +  
Sbjct: 501 DILGRAGHIEEAKNFVEEMPFEPNDVIWRSLLSACKTHESFNVGQPVAENLMRLDSPSPS 560

Query: 521 CYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDE 580
            YV+ SN+YA  G+W+ V +VR MMK++  +K PG S IE  G ++ F V DKSHPQ   
Sbjct: 561 SYVLASNMYAGLGKWNDVRKVRAMMKQKNLKKIPGCSWIELEGHVYAFFVQDKSHPQFSG 620

Query: 581 IHSKLSEM 588
           I+S L  +
Sbjct: 621 IYSILDSL 628


>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 228/510 (44%), Positives = 319/510 (62%), Gaps = 1/510 (0%)

Query: 180 FDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAR 239
           F+ M  KD+ SWN LI G+ + G+++ A  LF  MP+++  SW+ ++ G+ + G +E A 
Sbjct: 159 FNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVMPEKNGVSWSAMISGYVEHGDLEAAE 218

Query: 240 EIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFME 299
           E++  +  +++V   AM+ GYMK G V+ A  +F  M +++L+TWNSMIAGY  N R  +
Sbjct: 219 ELYKNVGMKSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAED 278

Query: 300 ALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQ 359
            L++ +TM+   V PN  +L S L   + L+ L  GR MH  + K+    D    T LI 
Sbjct: 279 GLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLIS 338

Query: 360 MYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAIT 419
           MY KCG ++SA  +F  + +K V  W AMI G   HG   +AL LF+KM    MKP  IT
Sbjct: 339 MYCKCGDLDSAWKLFLEMPRKDVITWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWIT 398

Query: 420 FIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM 479
           F+ V+ AC+HAG V+ G +YF  M  ++GIE    HY C++D+L R G L+EA S I+ M
Sbjct: 399 FVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEM 458

Query: 480 PMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVS 539
           P  P+  I+ +LL   R H N D+ E+AA NL+ + P +   YV L+NIYAA  +WD+V+
Sbjct: 459 PFTPHAAIYGTLLGACRIHKNLDLAEFAARNLLNLDPTSATGYVQLANIYAATNKWDQVA 518

Query: 540 EVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVP 599
           +VR+MMK+    K PG S IE + V HEF   D+ HP+   IH KL+E+  K+K AG+VP
Sbjct: 519 KVRKMMKEHNVVKIPGYSWIEIKSVTHEFRSSDRLHPELTSIHKKLNELDGKMKLAGYVP 578

Query: 600 DTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLL 659
           D    L  +E++  KE  L  HSE+LAIAFGL+     +PIR+ KNLRVC DCH   K +
Sbjct: 579 DLEFALHDVEEE-HKEKLLLWHSEKLAIAFGLMKTAPGTPIRVFKNLRVCGDCHRAIKFI 637

Query: 660 SGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           S I  REIIVRD +RFHHF+NG CSC D+W
Sbjct: 638 SAIEKREIIVRDTTRFHHFRNGFCSCGDYW 667



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 135/314 (42%), Gaps = 42/314 (13%)

Query: 218 DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMK-AGDVDSACELFD-- 274
           D+ S    +  F +   +E AR +F +M  R  V+WN M++GY K AG V  A ELFD  
Sbjct: 72  DVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKI 131

Query: 275 -----------------------------DMEIRDLITWNSMIAGYELNGRFMEALELLE 305
                                         M ++D+ +WN++I+G+  NG+  +A +L  
Sbjct: 132 PEPDSVSYNIMLVCYLRSYGVKAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFS 191

Query: 306 TMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCG 365
            M       N  +  + +S       L     ++  +     VV+    T ++  Y K G
Sbjct: 192 VM----PEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVE----TAMLTGYMKFG 243

Query: 366 SIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN 425
            +E A  +F+ ++ K +  W +MI G   +  A   L +F  M    ++P  ++   VL 
Sbjct: 244 KVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLL 303

Query: 426 ACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNF 485
            CS+   +  GR+  + +++   +         L+ + C+ G L+ A      MP R + 
Sbjct: 304 GCSNLSALPLGRQ-MHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMP-RKDV 361

Query: 486 VIWMSLLSGARNHG 499
           + W +++SG   HG
Sbjct: 362 ITWNAMISGYAQHG 375



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 109/212 (51%), Gaps = 10/212 (4%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           A  IF R+    +LV +N +I  YV N R+ + L +F  +++  + P+  +L  V+ G +
Sbjct: 248 AERIFQRMAVK-NLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCS 306

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
            L A+  G+Q+H LV K     D    +SL+SMY K G++D   ++F  M  KD+++WN 
Sbjct: 307 NLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVITWNA 366

Query: 194 LIDGYVKKGEVEVAMKLFDEMPD----RDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR- 248
           +I GY + G    A+ LFD+M +     D  ++  ++   +  G V++  + F  M    
Sbjct: 367 MISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEF 426

Query: 249 ----NLVSWNAMINGYMKAGDVDSACELFDDM 276
                 V +  +I+   +AG +D A  L  +M
Sbjct: 427 GIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEM 458



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 132/301 (43%), Gaps = 79/301 (26%)

Query: 43  LSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQR 102
           +SV+T + +++     +LS Y       +  A  +FD+I + P  V YN+++ CY+ +  
Sbjct: 99  MSVRTTVTWNT-----MLSGYTKV-AGKVKEAHELFDKIPE-PDSVSYNIMLVCYLRSYG 151

Query: 103 SHEALTLFCDL------------------------LDRF-LLPDN--FTLPCVIKGAARL 135
              AL  F  +                         D F ++P+    +   +I G    
Sbjct: 152 VKAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVMPEKNGVSWSAMISGYVEH 211

Query: 136 GAIKEGKQIHGLVFKLGFGFDKFVL-SSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCL 194
           G ++  ++++  V     G    V+ +++++ Y KFG+++L  R+F  M  K+LV+WN +
Sbjct: 212 GDLEAAEELYKNV-----GMKSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSM 266

Query: 195 IDGYVKKGEVEVAMKLFDEMPD-------------------------------------- 216
           I GYV+    E  +K+F  M +                                      
Sbjct: 267 IAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPL 326

Query: 217 -RDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDD 275
            +D  + T L+  + KCG ++ A ++F  MP +++++WNAMI+GY + G    A  LFD 
Sbjct: 327 SKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVITWNAMISGYAQHGAGRKALHLFDK 386

Query: 276 M 276
           M
Sbjct: 387 M 387


>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
          Length = 798

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 238/606 (39%), Positives = 360/606 (59%), Gaps = 10/606 (1%)

Query: 85  PSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQI 144
           PS+V +  L++ YV +    +A+ LF  + +R    ++ +   ++ G    G + E +++
Sbjct: 110 PSVVSFTSLLRGYVRHGLLADAIRLFQQMPER----NHVSYTVLLGGLLDAGRVNEARRL 165

Query: 145 HGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEV 204
               F      D    ++++S Y + G I   R +FD M  +++VSW  +I GY + GEV
Sbjct: 166 ----FDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEV 221

Query: 205 EVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAG 264
            +A KLF+ MP+R+  SWT ++ G+ + G VE A E+F  MP   + + NAM+ G+ + G
Sbjct: 222 NLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRG 281

Query: 265 DVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS 324
            VD+A  +F+ M  RD  TW++MI  YE N   MEAL     ML   V PN  +++S L+
Sbjct: 282 MVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILT 341

Query: 325 AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGH 384
             A LAVL+ GR +H+ +++  F +D    + LI MY KCG+++ A  VF     K +  
Sbjct: 342 VCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVM 401

Query: 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMI 444
           W +MI G   HG+  QAL +F+ M   GM P  IT+IG L ACS+ G V +GR  FN M 
Sbjct: 402 WNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMT 461

Query: 445 NDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIG 504
            +  I P  EHY C+VD+L R+G +EEA   I++MP+ P+ VIW +L+   R H N +I 
Sbjct: 462 VNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIA 521

Query: 505 EYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGV 564
           E AA  L+++ P   G YV+LS+IY + G+W+  S++R+ +  R   K PG S IE+   
Sbjct: 522 EVAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKR 581

Query: 565 LHEFVVGDK-SHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSE 623
           +H F  GD  +HP+   I   L ++   L  +G+  D + VL  I D+++K   L  HSE
Sbjct: 582 VHLFTSGDVLAHPEHAAILRILEKLDGLLMESGYSADGSFVLHDI-DEEQKSHSLRYHSE 640

Query: 624 RLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSC 683
           R A+A+GL+ +    PIR++KNLRVC DCHS  KL++ I +REI++RD +RFHHFK+G C
Sbjct: 641 RQAVAYGLLKIPEGMPIRVMKNLRVCGDCHSAIKLIAKITSREIVLRDANRFHHFKDGFC 700

Query: 684 SCKDFW 689
           SC+D+W
Sbjct: 701 SCRDYW 706



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 113/421 (26%), Positives = 194/421 (46%), Gaps = 53/421 (12%)

Query: 161 SSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLID------------------------ 196
           ++L++ Y +    D    +F  M  +DL S+N LI                         
Sbjct: 52  NALLAGYFRNRLPDAALGLFRRMPSRDLASYNALISGLSLRRQTLPDAAAALASIPFPPS 111

Query: 197 ---------GYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPN 247
                    GYV+ G +  A++LF +MP+R+  S+T L+ G    G+V  AR +F  MP+
Sbjct: 112 VVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMPD 171

Query: 248 RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETM 307
           R++V+W AM++GY +AG +  A  LFD+M  R++++W +MI+GY  NG    A +L E M
Sbjct: 172 RDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVM 231

Query: 308 LIGDVLPNDATLVSALSA--VAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCG 365
              + +   A LV  + A  V   A L      H     N  +V           + + G
Sbjct: 232 PERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVG----------FGQRG 281

Query: 366 SIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN 425
            +++A TVF  + ++  G W+AMI     +    +AL  F +M   G++P   + I +L 
Sbjct: 282 MVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILT 341

Query: 426 ACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNF 485
            C+   +++ GR     M+     +  +     L+ +  + G L++AK    +   + + 
Sbjct: 342 VCAALAVLDYGREVHAAMLR-CSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPK-DI 399

Query: 486 VIWMSLLSGARNH--GNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVRE 543
           V+W S+++G   H  G + +G +    L  ++PD I     L+    A     KV E RE
Sbjct: 400 VMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALT----ACSYTGKVKEGRE 455

Query: 544 M 544
           +
Sbjct: 456 I 456



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 117/260 (45%), Gaps = 25/260 (9%)

Query: 229 FSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMI 288
            ++ G +E AR  F  MP R   S+NA++ GY +    D+A  LF  M  RDL ++N++I
Sbjct: 27  LARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYNALI 86

Query: 289 AGYELNGRFM-EALELLETMLIGDVLPNDATLVSALSAVAGLA----VLNKGRWMHSYIV 343
           +G  L  + + +A   L +      +P   ++VS  S + G      + +  R       
Sbjct: 87  SGLSLRRQTLPDAAAALAS------IPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140

Query: 344 KNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALD 403
           +N      +LG LL       G +  A  +F  +  + V  WTAM+ G    G  T+A  
Sbjct: 141 RNHVSYTVLLGGLL-----DAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARA 195

Query: 404 LFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDIL 463
           LF++M     K   +++  +++  +  G VN  R+ F +M     +  T    G +    
Sbjct: 196 LFDEMP----KRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYI---- 247

Query: 464 CRTGYLEEAKSTIESMPMRP 483
            + G++E+A     +MP  P
Sbjct: 248 -QAGHVEDAAELFNAMPEHP 266


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 256/666 (38%), Positives = 385/666 (57%), Gaps = 10/666 (1%)

Query: 31  SSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLY 90
           SS  K+   +HA  +K++   +  +++ L+++Y       +  A +IF   +     + +
Sbjct: 295 SSFIKQGMFIHATVLKSSYYINVFVANALIAMYA--RFGKMGEAANIFYN-MDDWDTISW 351

Query: 91  NLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFK 150
           N ++  +V N   HEAL  + ++ D    PD   +  +I  +AR G    G QIH    K
Sbjct: 352 NSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMK 411

Query: 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
            G   D  V +SLV MYAKF  +     +FD M DKD+VSW  +I G+ + G    A++L
Sbjct: 412 NGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALEL 471

Query: 211 FDEMP----DRDLFSWTCLVDGFSKCGKVEIAREI---FYRMPNRNLVSWNAMINGYMKA 263
           F E+     D D+   + ++   S    +   +EI     R    +LV  N +++ Y + 
Sbjct: 472 FREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLSDLVLQNGIVDVYGEC 531

Query: 264 GDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSAL 323
           G+VD A  +F+ +E +D+++W SMI+ Y  NG   EALEL   M    V P+  +LVS L
Sbjct: 532 GNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSIL 591

Query: 324 SAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVG 383
           SA A L+ L KG+ +H ++++ GFV++G L + L+ MY++CG++E +  VF  I  K + 
Sbjct: 592 SAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLV 651

Query: 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMM 443
            WT+MI   GMHG    A+DLF +M    + P  I F+ VL ACSH+GL+N+GRR+   M
Sbjct: 652 LWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESM 711

Query: 444 INDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDI 503
             +Y +EP  EHY CLVD+L R  +LEEA   ++ M + P   +W +LL   + H NK++
Sbjct: 712 KYEYQLEPWPEHYACLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKEL 771

Query: 504 GEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRG 563
           GE AA  L+++ P+  G YV++SN+Y+A  +W  V  VR  MK  G +K+PG S IE   
Sbjct: 772 GEIAAQKLLEMDPENPGNYVLVSNVYSAERRWKDVEXVRMRMKASGLKKNPGCSWIEVGN 831

Query: 564 VLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSE 623
            +H F+  DKSHPQ+ EI+SKLS++  KL   G     T+ +L    ++EK   L  HSE
Sbjct: 832 KVHTFMARDKSHPQSYEIYSKLSQITEKLAKEGGYVAQTKFVLHNAKEEEKVQMLYGHSE 891

Query: 624 RLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSC 683
           RLAIA+G++     + +RI KNLRVC DCH+  KL+S  + RE+++RD +RFHHFK G C
Sbjct: 892 RLAIAYGMLTTPEGASLRITKNLRVCGDCHNFCKLISKFFERELVMRDANRFHHFKGGVC 951

Query: 684 SCKDFW 689
           SC D W
Sbjct: 952 SCGDVW 957



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 141/502 (28%), Positives = 264/502 (52%), Gaps = 25/502 (4%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYV 98
           ++H L++K   +    +++ ++ +Y     N+L+ AR +FDR+ +   +V +N +I  Y 
Sbjct: 201 EVHGLAIKEGYVSIVFVANSIVGMYTK--CNDLNGARQLFDRMPEKEDVVSWNSMISAYS 258

Query: 99  FNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKF 158
            N +S EAL LF ++    L P+ +T    ++       IK+G  IH  V K  +  + F
Sbjct: 259 SNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVF 318

Query: 159 VLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR- 217
           V ++L++MYA+FG++     +F  MDD D +SWN ++ G+V+ G    A++ + EM D  
Sbjct: 319 VANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAG 378

Query: 218 ---DLFSWTCLVDGFSKCGKVEIAREIF-YRMPN---RNLVSWNAMINGYMKAGDVDSAC 270
              DL +   ++   ++ G      +I  Y M N    +L   N++++ Y K   +    
Sbjct: 379 QKPDLVAVISIIAASARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMD 438

Query: 271 ELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLA 330
            +FD M  +D+++W ++IAG+  NG    ALEL   + +  +  +   + S L A +GL 
Sbjct: 439 CIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLK 498

Query: 331 VLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIV 390
           +++  + +HSYI++ G + D VL   ++ +Y +CG+++ A  +F  I  K V  WT+MI 
Sbjct: 499 LISSVKEIHSYIIRKG-LSDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMIS 557

Query: 391 GLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIND-YGI 449
               +G+A +AL+LF+ M   G++P +I+ + +L+A +    +  G+     +I   + +
Sbjct: 558 CYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVL 617

Query: 450 EPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAAN 509
           E ++     LVD+  R G LE++++    +  + + V+W S+++    HG       AA 
Sbjct: 618 EGSLA--STLVDMYARCGTLEKSRNVFNFIRNK-DLVLWTSMINAYGMHGCGR----AAI 670

Query: 510 NLIK------VAPDTIGCYVVL 525
           +L +      +APD I    VL
Sbjct: 671 DLFRRMEDESIAPDHIAFVAVL 692



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 148/531 (27%), Positives = 258/531 (48%), Gaps = 27/531 (5%)

Query: 36  ETQQLHALSVKTNLIYHS-GISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           E QQ+HA  + +N +++S  +S+RL+ +Y       L  A  +FD  + H ++  +N +I
Sbjct: 96  EGQQVHAHMITSNALFNSVFLSTRLVFMY--GKCGCLVDAEKLFDG-MPHKTIFTWNAMI 152

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
             YV N     +L L+ ++    +  D  T PC++K    L   + G ++HGL  K G+ 
Sbjct: 153 GAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRYGAEVHGLAIKEGYV 212

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK-DLVSWNCLIDGYVKKGEVEVAMKLFDE 213
              FV +S+V MY K  +++  R++FD M +K D+VSWN +I  Y   G+   A++LF E
Sbjct: 213 SIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGE 272

Query: 214 MPDRDLFSWT---------CLVDGFSKCG---KVEIAREIFYRMPNRNLVSWNAMINGYM 261
           M    L   T         C    F K G      + +  +Y     N+   NA+I  Y 
Sbjct: 273 MQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYY----INVFVANALIAMYA 328

Query: 262 KAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVS 321
           + G +  A  +F +M+  D I+WNSM++G+  NG + EAL+    M      P+   ++S
Sbjct: 329 RFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVIS 388

Query: 322 ALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKK 381
            ++A A       G  +H+Y +KNG   D  +G  L+ MY+K  S++    +F  +  K 
Sbjct: 389 IIAASARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKD 448

Query: 382 VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFN 441
           V  WT +I G   +G  ++AL+LF ++   G+    +    +L ACS   L++  +   +
Sbjct: 449 VVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHS 508

Query: 442 MMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG-- 499
            +I   G+   +   G +VD+    G ++ A    E +  + + V W S++S   ++G  
Sbjct: 509 YIIRK-GLSDLVLQNG-IVDVYGECGNVDYAARMFELIEFK-DVVSWTSMISCYVHNGLA 565

Query: 500 NKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGF 550
           N+ +  +       V PD+I   V + +  A+     K  E+   + ++GF
Sbjct: 566 NEALELFHLMKETGVEPDSIS-LVSILSAAASLSALKKGKEIHGFLIRKGF 615


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 248/660 (37%), Positives = 385/660 (58%), Gaps = 16/660 (2%)

Query: 40  LHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVF 99
           LHA   K     ++ + + L+  Y      +++ AR  FD I     +V +  ++ CY  
Sbjct: 63  LHACIYKLGHESNAFVGTALIDAY--AVCGSVNSARQAFDAI-ACKDMVSWTGMVACYAE 119

Query: 100 NQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFV 159
           N R  ++L LF ++      P++FT   V+K    L A   GK +HG V K  +  D +V
Sbjct: 120 NDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYV 179

Query: 160 LSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM----- 214
              L+ +Y KFG+ +   RVF+ M   D++ W+ +I  Y +  +   A++LF +M     
Sbjct: 180 GVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFV 239

Query: 215 -PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMP----NRNLVSWNAMINGYMKAGDVDSA 269
            P++  F++  ++   +    +++ +++   +     + N+   NA+++ Y K G +D++
Sbjct: 240 LPNQ--FTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNS 297

Query: 270 CELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGL 329
            +LF ++  R+ +TWN+MI GY  +G   +AL L + ML   V  ++ T  S L A A L
Sbjct: 298 MKLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASL 357

Query: 330 AVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMI 389
           A +  G  +HS  +K  +  D V+G  LI MY+KCGSI++A  VF  +S++    W AMI
Sbjct: 358 AAMELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMI 417

Query: 390 VGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGI 449
            G  MHG+  +AL  F  M      P  +TF+ +L+ACS+AGL++ G+ YF  M+ DYGI
Sbjct: 418 SGYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGI 477

Query: 450 EPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAAN 509
           EP +EHY C+V +L R+G+L++A   IE +P+ PN  +W +LL     H + D+G  +A 
Sbjct: 478 EPCMEHYTCMVWLLGRSGHLDKAVKLIEEIPLEPNVKVWRALLGACVIHNDVDLGIMSAQ 537

Query: 510 NLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFV 569
            ++++ P     +V+LSNIYA   +W+ V+ VR+ MK +G +K+PG S IE++G++H F 
Sbjct: 538 QILQIDPQDEATHVLLSNIYARTRRWNSVASVRKFMKNKGVKKEPGLSWIENQGIVHYFS 597

Query: 570 VGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAF 629
           VGD SHP    I   L  +  K + AG+VPD   VL  +ED  EK+  L  HSERLA+AF
Sbjct: 598 VGDTSHPDMKMISGMLEWLNMKTEKAGYVPDLNAVLRDVEDD-EKKRHLWVHSERLALAF 656

Query: 630 GLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           GLI   SR  IRI+KNLR+C DCHS  KL+S I  R+II+RD +RFHHF++G CSC D+W
Sbjct: 657 GLIRTPSRGHIRILKNLRICTDCHSAIKLISKIVQRDIIIRDMNRFHHFQDGICSCGDYW 716



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 106/424 (25%), Positives = 204/424 (48%), Gaps = 18/424 (4%)

Query: 88  VLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGL 147
           V +  LI+ YV + +  E + LF  +       + F    ++K    +   +    +H  
Sbjct: 7   VSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELAYSLHAC 66

Query: 148 VFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVA 207
           ++KLG   + FV ++L+  YA  G ++  R+ FDA+  KD+VSW  ++  Y +    + +
Sbjct: 67  IYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDRFQDS 126

Query: 208 MKLFDEM------PDRDLFSW---TCL-VDGFSKCGKVE-IAREIFYRMPNRNLVSWNAM 256
           ++LF EM      P+   F+     C+ ++ FS    V     +  Y M   +L     +
Sbjct: 127 LQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEM---DLYVGVGL 183

Query: 257 INGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPND 316
           ++ Y K GD +    +F++M   D+I W+ MI+ Y  + +  EA+EL   M    VLPN 
Sbjct: 184 LDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQ 243

Query: 317 ATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRA 376
            T  S L + A +  L  G+ +H +++K G   +  +   L+ +Y+KCG +++++ +F  
Sbjct: 244 FTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFME 303

Query: 377 ISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDG 436
           +  +    W  MIVG    G   +AL L+  M    ++ + +T+  VL AC+    +  G
Sbjct: 304 LPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELG 363

Query: 437 RRYFNMMIND-YGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGA 495
            +  ++ +   Y  +  + +   L+D+  + G ++ A+   + +  R   + W +++SG 
Sbjct: 364 TQIHSLSLKTIYDKDVVVGN--ALIDMYAKCGSIKNARLVFDMLSERDE-ISWNAMISGY 420

Query: 496 RNHG 499
             HG
Sbjct: 421 SMHG 424



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 83/184 (45%), Gaps = 33/184 (17%)

Query: 245 MPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNG-RFMEALEL 303
           MP+RN VS+  +I GY+++  +D   +LF  +             G+ELN   F   L+L
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHRE----------GHELNPFVFTTILKL 50

Query: 304 LETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSK 363
           L ++   ++  +                      +H+ I K G   +  +GT LI  Y+ 
Sbjct: 51  LVSVECAELAYS----------------------LHACIYKLGHESNAFVGTALIDAYAV 88

Query: 364 CGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGV 423
           CGS+ SA   F AI+ K +  WT M+     +     +L LF +M  +G  P   TF GV
Sbjct: 89  CGSVNSARQAFDAIACKDMVSWTGMVACYAENDRFQDSLQLFAEMRMVGFNPNHFTFAGV 148

Query: 424 LNAC 427
           L AC
Sbjct: 149 LKAC 152


>gi|147807930|emb|CAN62155.1| hypothetical protein VITISV_032407 [Vitis vinifera]
          Length = 585

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 238/578 (41%), Positives = 351/578 (60%), Gaps = 8/578 (1%)

Query: 6   LQHSSPIHALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVD 65
           +  S+P   L+  L S     +L+ S T  +  Q+HA  + TNLI  +  +SRLL   V 
Sbjct: 1   MAQSTPKLQLKNPLLS-----LLQXSKTSSQILQIHAQLITTNLISDTFAASRLLDSVVS 55

Query: 66  PHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTL 125
             +N ++YA  +F +I Q P+  + N ++KCY  +     AL  + ++  + LL DN+T 
Sbjct: 56  KTLN-VNYAELVFAQIHQ-PNSFICNTMVKCYTESSTPERALRFYAEMRKKGLLGDNYTY 113

Query: 126 PCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD 185
           P V+K    +  + EG  + G   K GFG D FV++ L+SMY + GE    R VFD   +
Sbjct: 114 PFVLKACGAMCGLLEGGLVQGEAVKRGFGGDVFVVNGLISMYCRCGETGWARAVFDGFSE 173

Query: 186 KDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSK-CGKVEIAREIFYR 244
           KDLVSWN ++ GYV  GE+E A  +FDEMP+RD+ SW+ ++DG+ K  G+V  AR  F  
Sbjct: 174 KDLVSWNSMLGGYVWCGEMENAQNMFDEMPERDVVSWSIMIDGYGKKMGEVNRARVFFDS 233

Query: 245 MPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELL 304
           MP R+LVSWN+MI+GY K G+++ A E+FB M  +++I+W+ MI GY  +    EAL L 
Sbjct: 234 MPTRDLVSWNSMIDGYAKVGEMEVAREIFBKMLQKNVISWSIMIDGYAXHRDSKEALNLF 293

Query: 305 ETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKC 364
             ML   + P+  ++V A+SA + L  L++GRW+H Y+ +N  ++D V+ T L+ MY KC
Sbjct: 294 RQMLCQGIKPDRVSVVGAVSACSQLGALDQGRWIHLYMKRNRMLLDIVVQTALVDMYLKC 353

Query: 365 GSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVL 424
           GS + A  +F ++ ++ V  W  MIVGLGM+G   +AL+ F +M    +    + F+GVL
Sbjct: 354 GSXDEARXIFNSMPERNVVSWNVMIVGLGMNGFGKEALECFXQMEMERIPMDDLLFLGVL 413

Query: 425 NACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPN 484
            ACSHA LV +G   FN M   Y +EP +EHYGCLVD+L R G L++ ++ I+SMPM+PN
Sbjct: 414 MACSHANLVTEGLHIFNQMKGVYRLEPKLEHYGCLVDLLGRAGQLDQIQNIIQSMPMKPN 473

Query: 485 FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREM 544
             +W SLL   R H N  + E     L ++  D  G YV++SNIYA  G W+ +  +R++
Sbjct: 474 AALWGSLLLACRIHQNVTLAEIVVERLAELKADDSGVYVLMSNIYADVGMWEGMLRIRKL 533

Query: 545 MKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIH 582
           MK+R  +KD G S IE  G + EFV G+KSH   +EI 
Sbjct: 534 MKERKMKKDIGRSVIEVDGNVEEFVSGEKSHILREEIE 571


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 255/672 (37%), Positives = 390/672 (58%), Gaps = 13/672 (1%)

Query: 26  NILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHP 85
            +L  S       ++HAL + T +  H   +++L+  Y    + ++  AR +FD+  Q  
Sbjct: 12  TLLITSKDEPTIAKIHALMILTGIFGHGNSNAKLIQSY--ARLGHIESARQVFDKSPQ-C 68

Query: 86  SLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIH 145
            +  +N +I  Y       EAL+L+  +    + PD+ T   V+K   R   ++ G++  
Sbjct: 69  GVDAWNAMIIAYSRRGAMFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGEETW 128

Query: 146 GLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVE 205
                 G+G D FV ++++++YAK G++D   RVFD M  +DLV W  +I G  + G+  
Sbjct: 129 RQAVDQGYGDDVFVGAAVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAR 188

Query: 206 VAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLV----SWNAMI 257
            A+ ++ +M  +    D      L+   +  G  ++   I   M  ++++       +++
Sbjct: 189 EAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSLV 248

Query: 258 NGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDA 317
           + Y K G ++ A  +F  M  +++I+W+++I+G+  NG    AL+L+  M      P+  
Sbjct: 249 DMYAKNGHLELASCVFRRMLYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYKPDSV 308

Query: 318 TLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAI 377
           +LVS L A + +  L  G+ +H YIV+     D V  T +I MYSKCGS+  A TVF  I
Sbjct: 309 SLVSVLLACSQVGFLKLGKSVHGYIVRR-LHFDCVSSTAVIDMYSKCGSLSFARTVFDQI 367

Query: 378 SKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGR 437
           S +    W A+I   G+HG   +AL LF +M    +KP   TF  +L+A SH+GLV  GR
Sbjct: 368 SFRDSISWNAIIASYGIHGSGEEALSLFLQMRETNVKPDHATFASLLSAFSHSGLVEKGR 427

Query: 438 RYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARN 497
            +F++M+N+Y I+P+ +HY C+VD+L R G +EEA+  IESM   P   IW++LLSG  N
Sbjct: 428 YWFSIMVNEYKIQPSEKHYACMVDLLSRAGRVEEAQELIESMITEPGIAIWVALLSGCLN 487

Query: 498 HGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSS 557
           HG   IGE AA  ++++ PD  G Y ++SN +A A +WD+V+EVR++MKK G +K PG S
Sbjct: 488 HGKFLIGEMAAKKVLELNPDDPGIYSLVSNFFATARRWDEVAEVRKIMKKTGMKKVPGYS 547

Query: 558 SIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAE 617
            +E  G LH F++ DKSH Q +EI   L ++  ++KA G+VP T  VL  +E++  KE  
Sbjct: 548 VMEVNGKLHAFLMEDKSHHQYEEIMQVLGKLDYEMKAMGYVPKTEFVLHNLEEEV-KERM 606

Query: 618 LENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHH 677
           L NHSERLAIAFGL+N    + + I KNLRVC DCH  TK +S I NREI+VRD  RFHH
Sbjct: 607 LCNHSERLAIAFGLLNTGPGTRLLITKNLRVCGDCHEATKFISKIVNREIVVRDVKRFHH 666

Query: 678 FKNGSCSCKDFW 689
           FK+G CSC D+W
Sbjct: 667 FKDGVCSCGDYW 678


>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
 gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
          Length = 719

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 260/676 (38%), Positives = 374/676 (55%), Gaps = 41/676 (6%)

Query: 20  PSRLHW-NILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIF 78
           P+  H+ +++  S T  +  Q+HA  +  NL   S I+++L+S        +++++ ++F
Sbjct: 79  PTEAHFISLIHGSKTILQLHQIHAQIIIHNLSSSSLITTQLIS--SSSLRKSINHSLAVF 136

Query: 79  DRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAI 138
           +   +  +L  +N LI+    N     A+  F  +L   + PD  T P V+K  A L + 
Sbjct: 137 NH-HKPKNLFTFNALIRGLTTNSHFFNAIFHFRLMLRSGIKPDRLTYPFVLKSMAGLFST 195

Query: 139 KEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGY 198
           + G  IH ++ + G   D FV  SLV MY                               
Sbjct: 196 ELGMAIHCMILRCGIELDSFVRVSLVDMY------------------------------- 224

Query: 199 VKKGEVEVAMKLFDEMPDR-----DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSW 253
           VK  ++  A K+FDE P+R         W  L+ G  K G ++ A ++F  MP +  VSW
Sbjct: 225 VKVEKLGSAFKVFDESPERFDSGSSALLWNVLIKGCCKAGSMKKAVKLFKAMPKKENVSW 284

Query: 254 NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL 313
           + +I+G+ K GD+D A ELFD M  +++++W +M+ G+  NG   +AL +   ML   V 
Sbjct: 285 STLIDGFAKNGDMDRAMELFDQMPEKNVVSWTTMVDGFSRNGDSEKALSMFSKMLEEGVR 344

Query: 314 PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTV 373
           PN  T+VSALSA A +  L  G  +H YI  NG  +   LGT L+ MY+KCG+IESA  V
Sbjct: 345 PNAFTIVSALSACAKIGGLEAGLRIHKYIKDNGLHLTEALGTALVDMYAKCGNIESASEV 404

Query: 374 FRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLV 433
           F    +K +  WT MI G  +HG + QA+  F +M   G+KP  + F+ +L AC H+G V
Sbjct: 405 FGETEQKSIRTWTVMIWGWAIHGHSEQAIACFKQMMFAGIKPDEVVFLALLTACMHSGQV 464

Query: 434 NDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLS 493
           + G  +F+ M  DY IEP+++HY  +VD+L R+G L+EA   IE MPM P+FVIW +L  
Sbjct: 465 DIGLNFFDSMRLDYCIEPSMKHYTLIVDMLGRSGQLKEALRFIERMPMNPDFVIWGALFC 524

Query: 494 GARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKD 553
             R H    + ++A N L+K+ P   G Y+ LSN YAA GQW+    VR +M+ RG  K+
Sbjct: 525 ACRAHKKTKMAKFALNKLLKLEPTHTGNYIFLSNAYAALGQWEDAERVRVLMQNRGVHKN 584

Query: 554 PGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKE 613
            G S IE  G +H FV GD  H  +  I  KL E+       G++P T  VL  +E Q+E
Sbjct: 585 SGWSCIEVEGQVHRFVSGDHDHKDSKAICLKLEEIMAGAVKQGYIPGTEWVLHNME-QEE 643

Query: 614 KEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNS 673
           KE  L +H E+LA+AF LI       IRIVKNL+VC DCHS+ K  S I  REI++RD  
Sbjct: 644 KEDVLGSHGEKLALAFALICTSPGMTIRIVKNLQVCGDCHSLMKYASKISQREIMLRDMK 703

Query: 674 RFHHFKNGSCSCKDFW 689
           RFHHFK+GSCSC+D W
Sbjct: 704 RFHHFKDGSCSCRDHW 719


>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Vitis vinifera]
          Length = 643

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 260/676 (38%), Positives = 377/676 (55%), Gaps = 40/676 (5%)

Query: 17  QHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARS 76
           QHL S L  N      + K  +Q+HA   KT L     I+ +LL        + L YAR 
Sbjct: 5   QHLCSSLLTN----CRSLKNLKQVHAYVCKTGLDTDPIIAGKLLLHSAVSVPDALDYARR 60

Query: 77  IFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLP-DNFTLPCVIKGAARL 135
           +F     +P + ++N LI+    +     +L  F ++  R   P D+F+   ++K AA  
Sbjct: 61  LFLH-FPNPDVFMHNTLIRGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASY 119

Query: 136 GAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLI 195
            +++ G Q+H      G     FV ++LVSMY++                       C  
Sbjct: 120 RSLESGIQLHCQAIVHGLDTHLFVGTTLVSMYSE-----------------------C-- 154

Query: 196 DGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNA 255
                 G V  A K+F+EM + ++ +W  +V    +CG V+ A  +F RMP RNL SWN 
Sbjct: 155 ------GFVAFAKKVFEEMFEPNVVAWNAVVTACFRCGDVKGADMMFNRMPFRNLTSWNV 208

Query: 256 MINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPN 315
           M+ GY KAG+++ A +LF +M ++D ++W++MI G+  NG F EA      +    + PN
Sbjct: 209 MLAGYTKAGELELARKLFLEMPVKDDVSWSTMIVGFAHNGFFYEAFGFFRELQQVGMRPN 268

Query: 316 DATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVF- 374
           + +L  ALSA A    +  G+ +H +I K+GF+    +   L+  YSKCG++  A  VF 
Sbjct: 269 EVSLTGALSACADAGAIEFGKILHGFIEKSGFLWMVSVNNALLDTYSKCGNVGMARLVFE 328

Query: 375 RAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVN 434
           R   K+ +  WT+MI GL MHG   +A+ LF++M   G++P  I FI +L ACSHAGL+ 
Sbjct: 329 RMPEKRSIVSWTSMIAGLAMHGYGEEAIQLFHEMEESGIRPDGIAFISILYACSHAGLIE 388

Query: 435 DGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG 494
            G  YF  M + Y IEP IEHYGC+VD+  R G L++A   I  MP+ P  +IW +LL  
Sbjct: 389 KGYEYFYKMKDIYNIEPAIEHYGCMVDLYGRAGQLDKAYEFIIHMPVLPTAIIWRTLLGA 448

Query: 495 ARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDP 554
              HGN  + E     L ++ P+  G +V+LSNIYA AG+W  V+ VR  M  +   K P
Sbjct: 449 CSIHGNVKLAERVKERLSELDPNNSGDHVLLSNIYAVAGKWKDVAAVRRSMTDQRMNKTP 508

Query: 555 GSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAG-HVPDTTQVLLCIEDQKE 613
           G S IE   +++ FV G+  +  T+E + KL E+  KL+  G ++P+   VL  IED+ E
Sbjct: 509 GWSMIEVDKIMYSFVAGEVQNSITEEAYEKLKEIMLKLRVEGCYIPEVGSVLHDIEDE-E 567

Query: 614 KEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNS 673
           KE  +  HSE+LA+AFG+  +   S IRIVKNLRVC DCH+V KL+S +Y  EI+VRD S
Sbjct: 568 KEDSVSRHSEKLAVAFGIARLCKGSIIRIVKNLRVCRDCHTVMKLISKVYGLEIVVRDRS 627

Query: 674 RFHHFKNGSCSCKDFW 689
           RFH FK GSCSC+D+W
Sbjct: 628 RFHSFKTGSCSCRDYW 643


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 255/643 (39%), Positives = 366/643 (56%), Gaps = 12/643 (1%)

Query: 55  ISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL 114
           + S ++S  V      +  A+ +FD  + +  +V +N +I  YV       A  LF ++ 
Sbjct: 167 VGSSMISFLVK--FGKIGEAQRVFDG-MPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMH 223

Query: 115 DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEID 174
              + P   T+  +I+    +G +K GK +HG V  LG G D  VL+S V MY+K G+I+
Sbjct: 224 GSGIKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIE 283

Query: 175 LGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFS 230
             R VF  M  ++LVSWN +I G V+ G V  +  LF  +       DL +   L+ G S
Sbjct: 284 SARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCS 343

Query: 231 KCGKVEIAREIF---YRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSM 287
           +   +   + +     R    NL+   A+++ Y K G +  A  +F+ M+ R++ITW +M
Sbjct: 344 QTASLATGKILHGCAIRSFESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAM 403

Query: 288 IAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGF 347
           + G   NG   +AL L   M    +  N  T VS + + A L  L +GR +H ++ + GF
Sbjct: 404 LVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFRLGF 463

Query: 348 VVDGVLGTLLIQMYSKCGSIESALTVFRAIS-KKKVGHWTAMIVGLGMHGMATQALDLFN 406
             D V  T L+ MY+KCG I  A  +F   S  K V  W +MI G GMHG   QA+ +++
Sbjct: 464 AFDIVNMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIYH 523

Query: 407 KMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRT 466
           KM   G+KP   TF+ +L+ACSH+ LV  G   FN M  D+ I P  +HY CLVD+L R 
Sbjct: 524 KMIEEGLKPNQTTFLSLLSACSHSRLVEQGISLFNSMERDHNIRPIEKHYACLVDLLSRA 583

Query: 467 GYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLS 526
           G  EEA++ IE MP +P   +  +LLSG R H N ++G   ++ L+ +     G Y++LS
Sbjct: 584 GRFEEAQALIEKMPFQPGTAVLEALLSGCRTHKNINLGIQTSDKLLALDAMNPGIYIMLS 643

Query: 527 NIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLS 586
           NIYA A +WDKV  +R +M+ RG +K PG S +E    +H F  GD SHP  +EI+  L 
Sbjct: 644 NIYAEARRWDKVDYIRGLMRNRGLKKTPGYSLVETGNWVHTFFAGDNSHPNWEEIYHFLE 703

Query: 587 EMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNL 646
            +R+ ++ +G+VPDT+ VL  + D++ K   L  HSERLAIAFGL+   + S IRI KNL
Sbjct: 704 SLRSAVETSGYVPDTSCVLRDV-DEEMKVRMLWGHSERLAIAFGLLTTPAGSLIRITKNL 762

Query: 647 RVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           RVC DCH+VTK +S I  REIIVRD +RFHHF NG CSC D+W
Sbjct: 763 RVCGDCHTVTKYISKIVKREIIVRDANRFHHFSNGECSCGDYW 805



 Score =  208 bits (530), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 156/533 (29%), Positives = 255/533 (47%), Gaps = 80/533 (15%)

Query: 18  HLPSRLH--WNILKFSSTHK-ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYA 74
            LP+ +H   ++L+ SS +    +  HA  +  +L     ++++L+  Y D  + +L  A
Sbjct: 26  QLPTIIHNFLSLLRESSKNLIWVKSTHAQIITNSLSTDQFVATKLVKAYSD--LRSLEAA 83

Query: 75  RSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAAR 134
           R +FD+  Q P  +L N ++  Y+ + R  E L LF  +  R L  D+ +    +K  A 
Sbjct: 84  RYVFDQFFQ-PKGLLCNAMLCGYLQSGRYRETLELFGLMRSRNLEVDSCSCTFALKACAS 142

Query: 135 LGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCL 194
               + G +I     + G   ++FV SS++S   KFG+I   +RVFD M +KD+V WN +
Sbjct: 143 SLDYEMGMEIISSAVEKGMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSI 202

Query: 195 IDGYVKKGEVEVAMKLFDEM------PD-------------------------------- 216
           I GYV+ G  +VA +LF EM      P                                 
Sbjct: 203 IGGYVQAGCFDVAFQLFFEMHGSGIKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGL 262

Query: 217 -RDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDD 275
             D+   T  VD +SK G +E AR +FY+MP RNLVSWNAMI+G ++ G V  + +LF  
Sbjct: 263 GNDILVLTSFVDMYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHR 322

Query: 276 MEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKG 335
           + +R          G++L                        T+VS L   +  A L  G
Sbjct: 323 L-VRS-------SGGFDLT-----------------------TIVSLLQGCSQTASLATG 351

Query: 336 RWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMH 395
           + +H   +++ F  + +L T ++ +YSKCGS++ A  VF  +  + V  WTAM+VGL  +
Sbjct: 352 KILHGCAIRS-FESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAMLVGLAQN 410

Query: 396 GMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEH 455
           G A  AL LF +M   G+   ++TF+ ++++C+H G +  GR     +    G    I +
Sbjct: 411 GHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFR-LGFAFDIVN 469

Query: 456 YGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLS--GARNHGNKDIGEY 506
              LVD+  + G +  A+       +  + V+W S+++  G   HG + +G Y
Sbjct: 470 MTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIY 522


>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
 gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 231/587 (39%), Positives = 340/587 (57%), Gaps = 40/587 (6%)

Query: 142 KQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGY--- 198
           K IH  + +    FD F  S L+S+      +D   +VF  + + +L  +N  I G+   
Sbjct: 32  KIIHAHLIRAHTIFDVFAASCLISISINKNLLDYAAQVFYQIQNPNLFIYNSFIRGFSGS 91

Query: 199 --------------------------------VKKGEVEVAMKLFDEMP----DRDLFSW 222
                                            +KG +++ ++   ++     D D++  
Sbjct: 92  KDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQAHGQIIRHGFDSDVYVQ 151

Query: 223 TCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLI 282
             LV  +S  G ++ A  +F R+   ++VSW +M+ GY+K+GDV SA +LFD M  ++L+
Sbjct: 152 NSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGDVTSARKLFDKMPEKNLV 211

Query: 283 TWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYI 342
           TW+ MI+GY  N  F +A+EL   +    V  N+  +VS +++ A L  L  G   H YI
Sbjct: 212 TWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASCAHLGALELGERAHDYI 271

Query: 343 VKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQAL 402
           ++N   V+ +LGT L+ MY++CGSI+ A+ VF  +  +    WT +I G  MHG A +AL
Sbjct: 272 LRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDALSWTTLIAGFAMHGYAEKAL 331

Query: 403 DLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDI 462
           + F++M + G+ P  ITF  VL+ACSH GLV  G   F  M  DY IEP +EHYGC+VD+
Sbjct: 332 EYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLELFESMKRDYRIEPRLEHYGCMVDL 391

Query: 463 LCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCY 522
           L R G L EA+  +  MPM+PN  IW +LL   R H N +I E A   LI++ P+  G Y
Sbjct: 392 LGRAGKLAEAEKFVNEMPMKPNAPIWGALLGACRIHKNSEIAERAGKTLIELKPEHSGYY 451

Query: 523 VVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIH 582
           V+LSNIYA   +W+ V  +R+MMK+RG  K PG +  E  G +H+F +GDK+HP+  +I 
Sbjct: 452 VLLSNIYARTNKWENVENIRQMMKERGVVKPPGYTLFEMDGKVHKFTIGDKTHPEIQQIE 511

Query: 583 SKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRI 642
               E+  K++ AG+  +    L  I D++EKE+ +  HSE+LAIA+ ++  K   PIRI
Sbjct: 512 RMWEEILGKIRLAGYTGNNDDALFDI-DEEEKESNIHRHSEKLAIAYAIMRTKGHDPIRI 570

Query: 643 VKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           VKNLRVC DCH+ TKL+S +Y RE+IVRD +RFHHFK G+CSC D+W
Sbjct: 571 VKNLRVCEDCHTATKLISKVYERELIVRDRNRFHHFKGGACSCMDYW 617



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 125/508 (24%), Positives = 226/508 (44%), Gaps = 101/508 (19%)

Query: 26  NILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHP 85
           + L+  +T    + +HA  ++ + I+    +S L+S+ ++   N L YA  +F +I Q+P
Sbjct: 20  SFLESCTTLSHLKIIHAHLIRAHTIFDVFAASCLISISINK--NLLDYAAQVFYQI-QNP 76

Query: 86  SLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIH 145
           +L +YN  I+ +  ++   ++   +       L+PDN T P ++K   + G++  G Q H
Sbjct: 77  NLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQAH 136

Query: 146 GLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVE 205
           G + + GF  D +V +SLV+MY+  G+I     VF  +   D+VSW  ++ GY+K G+V 
Sbjct: 137 GQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGDVT 196

Query: 206 VAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR----------------- 248
            A KLFD+MP+++L +W+ ++ G++K    + A E+++ + +                  
Sbjct: 197 SARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASCA 256

Query: 249 ----------------------NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNS 286
                                 NL+   A+++ Y + G +D A  +FD +  RD ++W +
Sbjct: 257 HLGALELGERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDALSWTT 316

Query: 287 MIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNG 346
           +IAG+ ++G   +ALE    M    + P + T  + LSA                     
Sbjct: 317 LIAGFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSAC-------------------- 356

Query: 347 FVVDGVLGTLLIQMYSKCGSIESALTVFRAISK-----KKVGHWTAMIVGLGMHGMATQA 401
                          S  G +E  L +F ++ +      ++ H+  M+  LG  G   +A
Sbjct: 357 ---------------SHGGLVERGLELFESMKRDYRIEPRLEHYGCMVDLLGRAGKLAEA 401

Query: 402 LDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIE------- 454
               N+   M MKP A  +  +L AC         R + N  I +   +  IE       
Sbjct: 402 EKFVNE---MPMKPNAPIWGALLGAC---------RIHKNSEIAERAGKTLIELKPEHSG 449

Query: 455 HYGCLVDILCRTGYLEEAKSTIESMPMR 482
           +Y  L +I  RT   E  ++  + M  R
Sbjct: 450 YYVLLSNIYARTNKWENVENIRQMMKER 477


>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
 gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
          Length = 444

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 229/445 (51%), Positives = 295/445 (66%), Gaps = 1/445 (0%)

Query: 245 MPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELL 304
           MP ++LVS  AMI  Y K G +D A  LFD +E RD I WN MI GY  +G   E L L 
Sbjct: 1   MPEKSLVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLF 60

Query: 305 ETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKC 364
             ML   V PN+ T+++ LSA      L  GRW+HSYI  NG  ++  +GT LI MYSKC
Sbjct: 61  RQMLNAKVRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKC 120

Query: 365 GSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVL 424
           GS+E A  VF  IS K V  W +M+VG  MHG +  AL LF +MC +G +PT ITFIGVL
Sbjct: 121 GSLEDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVL 180

Query: 425 NACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPN 484
           NACSHAGLV++G ++F  M ++YGIEP +EHYGC+V++L R GYLEEA   +++M +  +
Sbjct: 181 NACSHAGLVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQD 240

Query: 485 FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREM 544
            V+W +LL   R HGN  +GE  A  L+       G YV+LSNIYAAAG W+ V+ VR +
Sbjct: 241 PVLWGTLLGACRLHGNIALGEQIAEYLVSQNLANSGTYVLLSNIYAAAGNWEGVARVRTL 300

Query: 545 MKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQV 604
           MK+ GF K+PG SSIE    +HEF+ GD  HP++ EI+  L E+   LK  G+ P T  V
Sbjct: 301 MKESGFEKEPGCSSIEVNNKVHEFLAGDLRHPKSREIYEMLEEINGWLKTHGYTPQTDIV 360

Query: 605 LLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYN 664
           L  +ED  +KE  L  HSE+LA+AFGLI  K  + I+IVKNLRVC DCH+VTKL+S I  
Sbjct: 361 LHDLED-AQKERSLGVHSEKLALAFGLITTKPGTTIKIVKNLRVCADCHAVTKLISKITG 419

Query: 665 REIIVRDNSRFHHFKNGSCSCKDFW 689
           R++++RD +RFHHF NG CSC D+W
Sbjct: 420 RKVVMRDRNRFHHFVNGLCSCGDYW 444



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 138/268 (51%), Gaps = 16/268 (5%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           AR +FD  L+    + +N++I  Y  +   +E L LF  +L+  + P+  T+  V+    
Sbjct: 25  ARVLFDG-LEERDAICWNVMIDGYAQHGLPNEGLLLFRQMLNAKVRPNEVTVLAVLSACG 83

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
           + GA++ G+ +H  +   G G +  V +SL+ MY+K G ++  R VF+ + +KD+V+WN 
Sbjct: 84  QTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARLVFERISNKDVVAWNS 143

Query: 194 LIDGYVKKGEVEVAMKLFDEM-----PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR 248
           ++ GY   G  + A++LF EM        D+ ++  +++  S  G V    + FY M + 
Sbjct: 144 MVVGYAMHGFSQDALRLFKEMCMIGYQPTDI-TFIGVLNACSHAGLVSEGWKFFYSMKDE 202

Query: 249 NLVS-----WNAMINGYMKAGDVDSACELFDDMEI-RDLITWNSMIAGYELNGRFMEALE 302
             +      +  M+N   +AG ++ A EL  +MEI +D + W +++    L+G      +
Sbjct: 203 YGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGTLLGACRLHGNIALGEQ 262

Query: 303 LLETMLIGDVLPNDAT--LVSALSAVAG 328
           + E  L+   L N  T  L+S + A AG
Sbjct: 263 IAE-YLVSQNLANSGTYVLLSNIYAAAG 289



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 66/280 (23%), Positives = 122/280 (43%), Gaps = 76/280 (27%)

Query: 160 LSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM----- 214
           L+++++ YAK+G ID  R +FD ++++D + WN +IDGY + G     + LF +M     
Sbjct: 9   LTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQMLNAKV 68

Query: 215 -PDR----------------DLFSW-----------------TCLVDGFSKCGKVEIARE 240
            P+                 +   W                 T L+D +SKCG +E AR 
Sbjct: 69  RPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARL 128

Query: 241 IFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEA 300
           +F R+ N+++V+WN+M+ GY   G    A  LF +M           + GY+        
Sbjct: 129 VFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEM----------CMIGYQ-------- 170

Query: 301 LELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLG--TLLI 358
                        P D T +  L+A +   ++++G W   Y +K+ + ++  +     ++
Sbjct: 171 -------------PTDITFIGVLNACSHAGLVSEG-WKFFYSMKDEYGIEPKVEHYGCMV 216

Query: 359 QMYSKCGSIESALTVFR--AISKKKVGHWTAMIVGLGMHG 396
            +  + G +E A  + +   I +  V  W  ++    +HG
Sbjct: 217 NLLGRAGYLEEAYELVKNMEIDQDPV-LWGTLLGACRLHG 255


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 240/661 (36%), Positives = 384/661 (58%), Gaps = 13/661 (1%)

Query: 38   QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
            +Q+H + +++ L     + + L+++YV     ++  ARS+F + +    L+ +N +I   
Sbjct: 955  KQIHGIVMRSGLDQVVSVGNCLINMYVKA--GSVSRARSVFGQ-MNEVDLISWNTMISGC 1011

Query: 98   VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARL-GAIKEGKQIHGLVFKLGFGFD 156
              +     ++ +F  LL   LLPD FT+  V++  + L G      QIH    K G   D
Sbjct: 1012 TLSGLEECSVGMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLD 1071

Query: 157  KFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD 216
             FV ++L+ +Y+K G+++    +F   D  DL SWN ++ GY+  G+   A++L+  M +
Sbjct: 1072 SFVSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQE 1131

Query: 217  RDLFS-WTCLVDGFSKCGKV-------EIAREIFYRMPNRNLVSWNAMINGYMKAGDVDS 268
                S    LV+     G +       +I   +  R  N +L   + +++ Y+K G+++S
Sbjct: 1132 SGERSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMES 1191

Query: 269  ACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAG 328
            A  +F ++   D + W +MI+G   NG+   AL     M +  V P++ T  + + A + 
Sbjct: 1192 ARRVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSL 1251

Query: 329  LAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAM 388
            L  L +GR +H+ IVK     D  + T L+ MY+KCG+IE A  +F+  + +++  W AM
Sbjct: 1252 LTALEQGRQIHANIVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAM 1311

Query: 389  IVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYG 448
            IVGL  HG A +AL  F  M   G+ P  +TFIGVL+ACSH+GLV++    F  M  +YG
Sbjct: 1312 IVGLAQHGNAKEALQFFKYMKSRGVMPDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYG 1371

Query: 449  IEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAA 508
            IEP IEHY CLVD L R G +EEA+  I SMP   +  ++ +LL+  R   +++ G+  A
Sbjct: 1372 IEPEIEHYSCLVDALSRAGRIEEAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVA 1431

Query: 509  NNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEF 568
              L+ + P     YV+LSN+YAAA QW+ V+  R MM+K   +KDPG S ++ +  +H F
Sbjct: 1432 EKLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKVNVKKDPGFSWVDLKNKVHLF 1491

Query: 569  VVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIA 628
            V GD+SH +TD I++K+  +  +++  G+VPDT   L+ +E++ +KE  L  HSE+LAIA
Sbjct: 1492 VAGDRSHEETDVIYNKVEYIMKRIREEGYVPDTDFALVDVEEE-DKECSLYYHSEKLAIA 1550

Query: 629  FGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDF 688
            +GL+     + +R++KNLRVC DCHS  K +S ++ REI++RD +RFHHF+NG CSC D+
Sbjct: 1551 YGLMKTPPSTTLRVIKNLRVCGDCHSAIKYISKVFKREIVLRDANRFHHFRNGICSCGDY 1610

Query: 689  W 689
            W
Sbjct: 1611 W 1611



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 125/469 (26%), Positives = 207/469 (44%), Gaps = 75/469 (15%)

Query: 73   YARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGA 132
            YA  +F        ++++N  +  ++    + EA+  F D+++  +  D  T   ++   
Sbjct: 886  YATKLFMYDDDGSDVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVV 945

Query: 133  ARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWN 192
            A L  ++ GKQIHG+V + G      V + L++MY K G +   R VF  M++ DL+SWN
Sbjct: 946  AGLNCLELGKQIHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWN 1005

Query: 193  CLIDGYVKKGEVEVAMKLF------DEMPDR----------------------------- 217
             +I G    G  E ++ +F        +PD+                             
Sbjct: 1006 TMISGCTLSGLEECSVGMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMK 1065

Query: 218  -----DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACEL 272
                 D F  T L+D +SK GK+E A  +F      +L SWNA+++GY+ +GD       
Sbjct: 1066 AGVVLDSFVSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGD------- 1118

Query: 273  FDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVL 332
                                    F +AL L   M       +  TLV+A  A  GL  L
Sbjct: 1119 ------------------------FPKALRLYILMQESGERSDQITLVNAAKAAGGLVGL 1154

Query: 333  NKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGL 392
             +G+ +H+ +VK GF +D  + + ++ MY KCG +ESA  VF  I       WT MI G 
Sbjct: 1155 KQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISGC 1214

Query: 393  GMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR-YFNMMINDYGIEP 451
              +G    AL  +++M    ++P   TF  ++ ACS    +  GR+ + N++  +   +P
Sbjct: 1215 VENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFDP 1274

Query: 452  TIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGN 500
             +     LVD+  + G +E+A+   +    R     W +++ G   HGN
Sbjct: 1275 FV--MTSLVDMYAKCGNIEDARGLFKRTNTR-RIASWNAMIVGLAQHGN 1320



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 145/596 (24%), Positives = 251/596 (42%), Gaps = 79/596 (13%)

Query: 55   ISSRLLSLYVDPHINNLHYARSIFDRILQ-HPSLVLYNLLIKCYVFN-QRSHEALTLFCD 112
            +++ L+++Y      +L  AR +FD     +  LV +N ++     +  +SH+   LF  
Sbjct: 693  VTNNLITMYA--KCGSLSSARKLFDTTPDTNRDLVTWNAILSALAAHADKSHDGFHLFRL 750

Query: 113  LLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGE 172
            L    +     TL  V K      +    + +HG   K+G  +D FV  +LV++YAKFG 
Sbjct: 751  LRRSVVSTTRHTLAPVFKMCLLSASPSASESLHGYAVKIGLQWDVFVAGALVNIYAKFGL 810

Query: 173  IDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLV 226
            I   R +FD M  +D+V WN ++  YV       AM LF E       PD D+   T  +
Sbjct: 811  IREARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRTGFRPD-DVTLRT--L 867

Query: 227  DGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNS 286
                KC K  +  + F     +                       ++DD +  D+I WN 
Sbjct: 868  SRVVKCKKNILELKQFKAYATKLF---------------------MYDD-DGSDVIVWNK 905

Query: 287  MIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNG 346
             ++ +   G   EA++    M+   V  +  T V  L+ VAGL  L  G+ +H  ++++G
Sbjct: 906  ALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSG 965

Query: 347  FVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFN 406
                  +G  LI MY K GS+  A +VF  +++  +  W  MI G  + G+   ++ +F 
Sbjct: 966  LDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFV 1025

Query: 407  KMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP--TIEHY--GCLVDI 462
             + R  + P   T   VL ACS      +G  Y    I+   ++    ++ +    L+D+
Sbjct: 1026 HLLRDSLLPDQFTVASVLRACSSL----EGGYYLATQIHACAMKAGVVLDSFVSTALIDV 1081

Query: 463  LCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIG-- 520
              + G +EEA+    +     +   W +++     HG    G++     + +     G  
Sbjct: 1082 YSKRGKMEEAEFLFVNQDGF-DLASWNAIM-----HGYIVSGDFPKALRLYILMQESGER 1135

Query: 521  -CYVVLSNIYAAAG---QWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHP 576
               + L N   AAG      +  ++  ++ KRGF  D   +S    GVL           
Sbjct: 1136 SDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTS----GVL----------- 1180

Query: 577  QTDEIHSKLSEMRNKLKAAGHVPD------TTQVLLCIEDQKEKEAELENHSERLA 626
               +++ K  EM +  +    +P       TT +  C+E+ +E+ A    H  RL+
Sbjct: 1181 ---DMYLKCGEMESARRVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLS 1233



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 75/162 (46%), Gaps = 9/162 (5%)

Query: 332 LNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAI--SKKKVGHWTAMI 389
           L+ G+  H+ I+ +G   D  +   LI MY+KCGS+ SA  +F     + + +  W A++
Sbjct: 672 LSLGKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDTNRDLVTWNAIL 731

Query: 390 VGLGMHGMATQ-ALDLFNKMCRMGMKPTAITFIGVLNAC--SHAGLVNDGRRYFNMMIND 446
             L  H   +     LF  + R  +  T  T   V   C  S +   ++    + + I  
Sbjct: 732 SALAAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASPSASESLHGYAVKI-- 789

Query: 447 YGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIW 488
            G++  +   G LV+I  + G + EA+   + M +R + V+W
Sbjct: 790 -GLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVR-DVVLW 829


>gi|359485688|ref|XP_002275048.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
 gi|297739328|emb|CBI28979.3| unnamed protein product [Vitis vinifera]
          Length = 585

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 239/578 (41%), Positives = 351/578 (60%), Gaps = 8/578 (1%)

Query: 6   LQHSSPIHALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVD 65
           +  S+P   L+  L S     +L+ S T  +  Q+HA  + TNLI  +  +SRLL   V 
Sbjct: 1   MAQSTPKLQLKNPLLS-----LLQKSKTSSQILQIHAQLITTNLISDTFAASRLLDSVVS 55

Query: 66  PHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTL 125
             +N ++YA  +F +I Q P+  + N ++KCY  +     AL  + ++  + LL DN+T 
Sbjct: 56  KTLN-VNYAELVFAQIHQ-PNSFICNTMVKCYTESSTPERALRFYAEMRRKGLLGDNYTY 113

Query: 126 PCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD 185
           P V+K    +  + EG  + G   K GFG D FV++ L+SMY + GE    R VFD   +
Sbjct: 114 PFVLKACGAMCGLLEGGLVQGEAVKRGFGGDVFVVNGLISMYCRCGETGWARAVFDGFSE 173

Query: 186 KDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSK-CGKVEIAREIFYR 244
           KDLVSWN ++ GYV  GE+E A  +FDEMP+RD+ SW+ ++DG+ K  G+V  AR  F  
Sbjct: 174 KDLVSWNSMLGGYVWCGEMENAQNMFDEMPERDVVSWSIMIDGYGKKMGEVNRARVFFDS 233

Query: 245 MPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELL 304
           MP R+LVSWN+MI+GY K G+++ A E+FD M  +++I+W+ MI GY  +    EAL L 
Sbjct: 234 MPTRDLVSWNSMIDGYAKVGEMEVAREIFDKMLQKNVISWSIMIDGYAQHRDSKEALNLF 293

Query: 305 ETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKC 364
             ML   + P+  ++V A+SA + L  L++GRW+H Y+ +N  ++D V+ T L+ MY KC
Sbjct: 294 RQMLCQGIKPDRVSVVGAVSACSQLGALDQGRWIHLYMKRNRMLLDIVVQTALVDMYLKC 353

Query: 365 GSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVL 424
           GS + A  +F ++ ++ V  W  MIVGLGM+G   +AL+ F +M    +    + F+GVL
Sbjct: 354 GSRDEARRIFNSMPERNVVSWNVMIVGLGMNGFGKEALECFTQMEMERIPMDDLLFLGVL 413

Query: 425 NACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPN 484
            ACSHA LV +G   FN M   Y +EP +EHYGCLVD+L R G L++ ++ I+SMPM+PN
Sbjct: 414 MACSHANLVTEGLHIFNQMKGVYRLEPKLEHYGCLVDLLGRAGQLDQIQNIIQSMPMKPN 473

Query: 485 FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREM 544
             +W SLL   R H N  + E     L ++  D  G YV++SNIYA  G W+ +  +R++
Sbjct: 474 AALWGSLLLACRIHQNVTLAEIVVERLAELKADDSGVYVLMSNIYADVGMWEGMLRIRKL 533

Query: 545 MKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIH 582
           MK+R  +KD G S IE  G + EFV G+KSH   +EI 
Sbjct: 534 MKERKMKKDIGRSVIEVDGNVEEFVSGEKSHILREEIE 571


>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 252/622 (40%), Positives = 352/622 (56%), Gaps = 39/622 (6%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           AR IFDR L+  ++V +N++I+ YV N    EAL++F  +L     PD++T PCV+K  +
Sbjct: 90  ARYIFDRSLEK-NVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACS 148

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
            L  ++ G Q+H  + K+G   + F+ ++LV+MY K G                     C
Sbjct: 149 GLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCG---------------------C 187

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNL--- 250
           L +          A K+ D+MP RD+ SW  +V G+++ G+ + A EI   M + NL   
Sbjct: 188 LRE----------ARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHD 237

Query: 251 ---VSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETM 307
              ++  + +  Y    +V     +F+ M  ++LI+WN MIA Y  N    EA+ L   M
Sbjct: 238 AGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQM 297

Query: 308 LIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSI 367
               + P+  T+ S L A   L+ L  GR +H YI K     + +L   L+ MY+KCG +
Sbjct: 298 EECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLQPNLLLENALLDMYAKCGCL 357

Query: 368 ESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNAC 427
           E A  VF  +  + V  WT+M+   G  G    A+ LF KM   G  P +I F+ VL+AC
Sbjct: 358 EEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSAC 417

Query: 428 SHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVI 487
           SH GL++ GR YF MM   YGI P IEH+ C+VD+  R G +EEA S I+ MPM PN  +
Sbjct: 418 SHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERV 477

Query: 488 WMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547
           W +LLS  R H   DIG  AA+ L ++AP   G YV+LSNIYA AG W  V  VR  MKK
Sbjct: 478 WGALLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKK 537

Query: 548 RGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLC 607
            G +K PG S++E  G +H F+ GD+ HPQ   I+ +L  +  K+K  G++P T   L  
Sbjct: 538 IGIKKVPGISNVELNGQVHTFLAGDQYHPQAKNIYGELDVLVGKMKELGYIPQTESALHD 597

Query: 608 IEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREI 667
           +E + +KE  L  HSE+LAI F ++N K  +PIRI KNLRVC DCH   KL+S I +R I
Sbjct: 598 VEVE-DKECHLAIHSEKLAIVFAILNTKQGTPIRITKNLRVCGDCHIAIKLISKIVSRNI 656

Query: 668 IVRDNSRFHHFKNGSCSCKDFW 689
           IVRD +RFHHF NG CSC D+W
Sbjct: 657 IVRDCNRFHHFSNGICSCGDYW 678


>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 707

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 242/617 (39%), Positives = 371/617 (60%), Gaps = 12/617 (1%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           AR +FD ++   ++V +  +++ YV      EA  LF ++  R ++    +   +I G  
Sbjct: 102 ARKVFD-VMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEMPRRNVV----SWTVMIGGLL 156

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
           +   I + K++  ++ +     D  V+++++  Y + G +D  R +FD M  +++ +W  
Sbjct: 157 KESRIDDAKKLFDMIPEK----DVVVVTNMIGGYCQVGRLDEARELFDEMKVRNVFTWTT 212

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSW 253
           ++ GY K G V+VA KLF+ MP+R+  SWT ++ G+++ G+++ A E+F  MP + +V+ 
Sbjct: 213 MVSGYAKNGRVDVARKLFEVMPERNEVSWTAMLMGYTQSGRMKEAFELFEAMPVKWIVAC 272

Query: 254 NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL 313
           N MI  +  AG++  A  +F+ M+ RD  TWN+MI  +E  G  +EAL L   M    V 
Sbjct: 273 NEMILQFGLAGEMHRARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFARMQREGVA 332

Query: 314 PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTV 373
            N  +++S LS  A LA L+ GR +H+ +V++ F  D  + ++LI MY KCG +  A  +
Sbjct: 333 LNFPSMISVLSVCASLASLDHGRQVHARLVRSEFDQDLYVASVLITMYVKCGDLVRAKGI 392

Query: 374 FRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLV 433
           F     K V  W +MI G   HG+  +AL++F+ MC  G++P  +TFIGVL+ACS++G V
Sbjct: 393 FNRFLFKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVQPDEVTFIGVLSACSYSGKV 452

Query: 434 NDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLS 493
            +G   F  M   Y +EP IEHY C+VD+L R G ++EA   +E MPM P+ ++W +LL 
Sbjct: 453 KEGFEIFEAMKCTYQVEPGIEHYACMVDLLGRAGRVDEAMELVEKMPMEPDAIVWGALLG 512

Query: 494 GARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKD 553
             RNH   D+ E A   L K+ P   G YV+LS++YA  G+W  V  +R+ + +R   K 
Sbjct: 513 ACRNHMKLDLAEVAVEKLAKLEPKNAGPYVLLSHMYATKGRWRDVEVLRKKINRRVI-KF 571

Query: 554 PGSSSIEHRGVLHEFVVGD-KSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQK 612
           PG S IE    +H F  GD KSHP+   I   L ++   L+ AG+ PD + VL  + D++
Sbjct: 572 PGCSWIEVEKKVHMFTGGDSKSHPEQHMITQMLEKLSGFLREAGYCPDGSFVLHDV-DEE 630

Query: 613 EKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDN 672
           EK   L  HSERLA+A+GL+ V    PIR++KNLRVC DCHS  KL++ +  REII+RD 
Sbjct: 631 EKTHSLGYHSERLAVAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIILRDA 690

Query: 673 SRFHHFKNGSCSCKDFW 689
           +RFHHFK+GSCSCKDFW
Sbjct: 691 NRFHHFKDGSCSCKDFW 707



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 136/530 (25%), Positives = 246/530 (46%), Gaps = 69/530 (13%)

Query: 41  HALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRI-LQHPSLVLYNLLIKCYVF 99
           +A +++  ++    + S   ++     I ++H AR +FD   L   ++  +N ++  Y  
Sbjct: 5   YAATLRCRMVQARSLCSNTSAISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFE 64

Query: 100 NQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFV 159
           + +  +AL LF  +  R                                       +   
Sbjct: 65  SHKPRDALLLFDQMPQR---------------------------------------NTVS 85

Query: 160 LSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL 219
            + ++S Y K G +   R+VFD M ++++VSW  ++ GYV++G VE A KLF EMP R++
Sbjct: 86  FNGMISGYVKNGMVADARKVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEMPRRNV 145

Query: 220 FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIR 279
            SWT ++ G  K  +++ A+++F  +P +++V    MI GY + G +D A ELFD+M++R
Sbjct: 146 VSWTVMIGGLLKESRIDDAKKLFDMIPEKDVVVVTNMIGGYCQVGRLDEARELFDEMKVR 205

Query: 280 DLITWNSMIAGYELNGRFMEALELLETMLIGDVLP--NDATLVSALSAVAGLAVLNKGRW 337
           ++ TW +M++GY  NGR   A +L E      V+P  N+ +  + L     +     GR 
Sbjct: 206 NVFTWTTMVSGYAKNGRVDVARKLFE------VMPERNEVSWTAML-----MGYTQSGRM 254

Query: 338 MHSYIVKNGFVVDGVLG-TLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHG 396
             ++ +     V  ++    +I  +   G +  A  +F  + ++  G W AMI      G
Sbjct: 255 KEAFELFEAMPVKWIVACNEMILQFGLAGEMHRARMMFEGMKERDEGTWNAMIKVFERKG 314

Query: 397 MATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHY 456
           +  +AL LF +M R G+     + I VL+ C+    ++ GR+    ++     +  +   
Sbjct: 315 LDLEALGLFARMQREGVALNFPSMISVLSVCASLASLDHGRQVHARLVRSE-FDQDLYVA 373

Query: 457 GCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNL----- 511
             L+ +  + G L  AK        + + V+W S+++G   HG   +GE A N       
Sbjct: 374 SVLITMYVKCGDLVRAKGIFNRFLFK-DVVMWNSMITGYSQHG---LGEEALNVFHDMCS 429

Query: 512 IKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEH 561
             V PD +    VLS   + +G+  +  E+ E MK   ++ +PG   IEH
Sbjct: 430 SGVQPDEVTFIGVLSAC-SYSGKVKEGFEIFEAMKCT-YQVEPG---IEH 474


>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 252/622 (40%), Positives = 352/622 (56%), Gaps = 39/622 (6%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           AR IFDR L+  ++V +N++I+ YV N    EAL++F  +L     PD++T PCV+K  +
Sbjct: 90  ARYIFDRSLEK-NVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACS 148

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
            L  ++ G Q+H  + K+G   + F+ ++LV+MY K G                     C
Sbjct: 149 GLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCG---------------------C 187

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNL--- 250
           L +          A K+ D+MP RD+ SW  +V G+++ G+ + A EI   M + NL   
Sbjct: 188 LRE----------ARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHD 237

Query: 251 ---VSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETM 307
              ++  + +  Y    +V     +F+ M  ++LI+WN MIA Y  N    EA+ L   M
Sbjct: 238 AGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQM 297

Query: 308 LIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSI 367
               + P+  T+ S L A   L+ L  GR +H YI K     + +L   L+ MY+KCG +
Sbjct: 298 EECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLRPNLLLENALLDMYAKCGCL 357

Query: 368 ESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNAC 427
           E A  VF  +  + V  WT+M+   G  G    A+ LF KM   G  P +I F+ VL+AC
Sbjct: 358 EEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSAC 417

Query: 428 SHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVI 487
           SH GL++ GR YF MM   YGI P IEH+ C+VD+  R G +EEA S I+ MPM PN  +
Sbjct: 418 SHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERV 477

Query: 488 WMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547
           W +LLS  R H   DIG  AA+ L ++AP   G YV+LSNIYA AG W  V  VR  MKK
Sbjct: 478 WGALLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKK 537

Query: 548 RGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLC 607
            G +K PG S++E  G +H F+ GD+ HPQ   I+ +L  +  K+K  G++P T   L  
Sbjct: 538 IGIKKVPGISNVELNGQVHTFLAGDQYHPQAKNIYGELDVLVGKMKELGYIPQTESALHD 597

Query: 608 IEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREI 667
           +E + +KE  L  HSE+LAI F ++N K  +PIRI KNLRVC DCH   KL+S I +R I
Sbjct: 598 VEVE-DKECHLAIHSEKLAIVFAILNTKQGTPIRITKNLRVCGDCHIAIKLISKIVSRNI 656

Query: 668 IVRDNSRFHHFKNGSCSCKDFW 689
           IVRD +RFHHF NG CSC D+W
Sbjct: 657 IVRDCNRFHHFSNGICSCGDYW 678


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 258/729 (35%), Positives = 402/729 (55%), Gaps = 75/729 (10%)

Query: 33  THKETQ--QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSL--- 87
           T  +TQ  +LH L +K+     + + + L++ Y    + N+ YAR +FD++ Q  S    
Sbjct: 18  TRNQTQAKKLHCLIIKSLTNPETFLYNNLINAY--SKLGNITYARHVFDKMPQPNSFSWN 75

Query: 88  ---------------------------VLYNLLIKCYVFNQRSHEALTLFCDLL-DRFLL 119
                                      V +N LI  YV      EA+  +  ++ D  L 
Sbjct: 76  TMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLN 135

Query: 120 PDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRV 179
            +  T   ++   +  G +  G+QIHG + K GFG   FV SSLV MYAK G + +  +V
Sbjct: 136 LNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQV 195

Query: 180 FDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAR 239
           FD + ++++V +N +I G ++ G V+ + +LF  M +RD  SWT ++ G  + G    A 
Sbjct: 196 FDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAM 255

Query: 240 EIFYRMP---------------------------------------NRNLVSWNAMINGY 260
           ++F  M                                        N N+   +A+++ Y
Sbjct: 256 DLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMY 315

Query: 261 MKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLV 320
            K   V  A  +F  M  +++++W +M+ GY  NG   EA+ +   M    + P+D TL 
Sbjct: 316 CKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLG 375

Query: 321 SALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKK 380
           S +S+ A LA L +G   H   + +G +    +   LI +Y KCGSIE +  +F  +S +
Sbjct: 376 SVISSCANLASLEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMSFR 435

Query: 381 KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYF 440
               WTA++ G    G A + +DLF +M   G+KP A+TFI VL+ACS AGLV  G++YF
Sbjct: 436 DEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQQYF 495

Query: 441 NMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGN 500
             M+ D+GI P  +HY C++D+  R G LEEAK+ I  MP  P+ + W +LLS  R +GN
Sbjct: 496 ESMLKDHGIIPFSDHYTCMIDLFGRAGRLEEAKNFINKMPFSPDSIGWATLLSSCRLYGN 555

Query: 501 KDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIE 560
           ++IG++AA +L+++ P     Y++LS+IYAA G+W  V+++R  M+++G RK+PG S I+
Sbjct: 556 EEIGKWAAESLLELDPQNPAGYILLSSIYAAKGKWSNVAQLRRGMREKGARKEPGFSWIK 615

Query: 561 HRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELEN 620
           ++  ++ F   D+S P +D+I+++L ++ +K+   G+VPD + VL  +ED  EK   L +
Sbjct: 616 YKSKVYIFSADDQSSPFSDQIYAELEKLNHKMIEEGYVPDASSVLHDVEDS-EKMKMLNH 674

Query: 621 HSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKN 680
           HSE+LAIAFGL+ +    PIR+VKNLRVC DCH+ TK +S I  REI+VRD  RFH FK+
Sbjct: 675 HSEKLAIAFGLLFIPHGLPIRVVKNLRVCGDCHNATKYISKISQREILVRDAVRFHLFKD 734

Query: 681 GSCSCKDFW 689
           G+CSC DFW
Sbjct: 735 GTCSCGDFW 743



 Score =  189 bits (481), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 134/479 (27%), Positives = 228/479 (47%), Gaps = 62/479 (12%)

Query: 96  CYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF 155
           C   NQ   +A  L C ++     P+ F    +I   ++LG I   + +          F
Sbjct: 16  CETRNQT--QAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHV----------F 63

Query: 156 DK------FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMK 209
           DK      F  ++++S Y+K G++   + +F  M ++D VSWN LI GYV  G V  A+K
Sbjct: 64  DKMPQPNSFSWNTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVK 123

Query: 210 LFDEMP-------DRDLFSW---------------------------------TCLVDGF 229
            ++ M        +R  FS                                  + LVD +
Sbjct: 124 TYNSMMKDGVLNLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMY 183

Query: 230 SKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIA 289
           +K G V +A ++F  +  RN+V +N MI G +++G V  +  LF  M+ RD I+W +MI 
Sbjct: 184 AKMGLVSVASQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMIT 243

Query: 290 GYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVV 349
           G   NG   EA++L   M    +  +  T  S L+A  GL  L +G+ +H+ I+++G+  
Sbjct: 244 GLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNH 303

Query: 350 DGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMC 409
           +  +G+ L+ MY KC S+  A  VF+ ++ K V  WTAM+VG G +G + +A+ +F  M 
Sbjct: 304 NVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQ 363

Query: 410 RMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYL 469
           R G++P   T   V+++C++   + +G ++    +   G+   I     L+ +  + G +
Sbjct: 364 RNGIEPDDFTLGSVISSCANLASLEEGAQFHCQALVS-GLISFITVSNALITLYGKCGSI 422

Query: 470 EEAKSTIESMPMRPNFVIWMSLLSGARNHG--NKDIGEYAANNLIKVAPDTIGCYVVLS 526
           E++    + M  R   V W +L+SG    G  N+ I  +    +  + PD +    VLS
Sbjct: 423 EDSNQLFDEMSFRDE-VSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLS 480


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 246/707 (34%), Positives = 374/707 (52%), Gaps = 86/707 (12%)

Query: 68  INNLHYARSIFDRI-LQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLP 126
           + NL  AR IF+   L     V YN +I  Y      H A+ LF  +      PD+FT  
Sbjct: 92  LGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRAMRWANFQPDDFTFA 151

Query: 127 CVIKGAARLGA-IKEGKQIHGLVFKLGFG------------------------------- 154
            V+  +  +    ++  Q+HG V K G                                 
Sbjct: 152 SVLSASTLIFYDERQCGQMHGTVVKFGIEIFPAVLNALLSVYVKCASSPLVSSSSLMASA 211

Query: 155 ---FDK------FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVE 205
              FD+      F+ ++L++ Y + G++   R + D M ++  ++WN +I GY+  G  E
Sbjct: 212 RKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFE 271

Query: 206 VAMKLFDEM-----------------------------------------PDRD--LFSW 222
            A+ LF +M                                         PDRD  L   
Sbjct: 272 DALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYILKNELNPDRDFLLSVG 331

Query: 223 TCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLI 282
             L+  + K GKV+ AR+IFY MP +++++WN +++GY+ AG ++ A   F  M  ++L+
Sbjct: 332 NTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLL 391

Query: 283 TWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYI 342
           TW  MI+G   NG   +AL+L   M +    PND     A++A + L  L  GR +H+ I
Sbjct: 392 TWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQLHAQI 451

Query: 343 VKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQAL 402
           V  G      +G  +I MY++CG +E+A T+F  +       W +MI  LG HG   +A+
Sbjct: 452 VHLGHDSTLSVGNAMITMYARCGIVEAARTMFLTMPFVDPVSWNSMIAALGQHGHGVKAI 511

Query: 403 DLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDI 462
           +L+ +M + G+ P   TF+ VL+ACSHAGLV +G RYFN M+ +YGI P  +HY  ++D+
Sbjct: 512 ELYEQMLKEGILPDRRTFLTVLSACSHAGLVEEGNRYFNSMLENYGIAPGEDHYARMIDL 571

Query: 463 LCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCY 522
            CR G   +AK+ I+SMP      IW +LL+G R HGN D+G  AA  L K+ P   G Y
Sbjct: 572 FCRAGKFSDAKNVIDSMPFEARAPIWEALLAGCRTHGNMDLGIEAAEKLFKLIPQHDGTY 631

Query: 523 VVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIH 582
           V+LSN+YA+ G+W+ V+  R++M+ RG +K+P  S  E    +H F+V D  HP+   I+
Sbjct: 632 VLLSNMYASLGRWNDVARTRKLMRDRGVKKEPACSWTEVENKVHVFLVDDTVHPEVLSIY 691

Query: 583 SKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRI 642
           + L ++  ++K  G++PDT  VL  +E +  KE  L  HSE+LA+AFGL+ +   + +R+
Sbjct: 692 NYLEKLNLEMKKIGYIPDTKYVLHDMESE-HKEYALSTHSEKLAVAFGLMKLPQGATVRV 750

Query: 643 VKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            KNLR+C DCH+  K +S +  REI+VRD  RFHHFKNG CSC+++W
Sbjct: 751 FKNLRICGDCHNAIKFMSKVVGREIVVRDGKRFHHFKNGECSCRNYW 797



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 128/533 (24%), Positives = 205/533 (38%), Gaps = 127/533 (23%)

Query: 113 LLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGE 172
           L +R+    N   P        L +    + +HG V   GF     +++ L+ +Y K  +
Sbjct: 10  LANRYFAQLNLCCP------QNLSSYSLARTVHGHVIASGFKLRGHIVNRLIDIYWKSSD 63

Query: 173 IDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP--DRDLFSWTCLVDGFS 230
               R++FD +   D+++   LI  Y   G +++A ++F+E P   RD   +  ++ G+S
Sbjct: 64  FVYARKLFDEIPQPDVIARTTLITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYS 123

Query: 231 KCGKVEIAREIFYRMPNRNL---------------------------------------- 250
                  A E+F  M   N                                         
Sbjct: 124 HMNDGHSAIELFRAMRWANFQPDDFTFASVLSASTLIFYDERQCGQMHGTVVKFGIEIFP 183

Query: 251 VSWNAMINGYMKAG---------DVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEAL 301
              NA+++ Y+K            + SA +LFD+M  R+   W ++I GY  NG    A 
Sbjct: 184 AVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAR 243

Query: 302 ELLETM-------------------LIGDVLP------------NDATLVSALSAVAGLA 330
           E+L+TM                   L  D L             +++T  S +SA A   
Sbjct: 244 EILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGG 303

Query: 331 VLNKGRWMHSYIVKNGFVVDG----VLGTLLIQMYSKCGSI------------------- 367
               G+ +H+YI+KN    D      +G  LI +Y K G +                   
Sbjct: 304 FFLLGKQVHAYILKNELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVKDIITWN 363

Query: 368 ------------ESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKP 415
                       E A + F  + +K +  WT MI GL  +G   QAL LFN+M   G +P
Sbjct: 364 TLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEP 423

Query: 416 TAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKST 475
               F G + ACS  G + +GR+  +  I   G + T+     ++ +  R G +E A++ 
Sbjct: 424 NDYAFAGAITACSVLGALENGRQ-LHAQIVHLGHDSTLSVGNAMITMYARCGIVEAARTM 482

Query: 476 IESMPMRPNFVIWMSLLS--GARNHGNKDIGEYAANNLIKVAPDTIGCYVVLS 526
             +MP   + V W S+++  G   HG K I  Y       + PD      VLS
Sbjct: 483 FLTMPF-VDPVSWNSMIAALGQHGHGVKAIELYEQMLKEGILPDRRTFLTVLS 534



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 98/385 (25%), Positives = 179/385 (46%), Gaps = 35/385 (9%)

Query: 192 NCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMP--NRN 249
           N LID Y K  +   A KLFDE+P  D+ + T L+  +S  G +++AREIF   P   R+
Sbjct: 52  NRLIDIYWKSSDFVYARKLFDEIPQPDVIARTTLITAYSALGNLKMAREIFNETPLDMRD 111

Query: 250 LVSWNAMINGYMKAGDVDSACELF----------DDMEIRDLITWNSMIAGYE-----LN 294
            V +NAMI GY    D  SA ELF          DD     +++ +++I   E     ++
Sbjct: 112 TVFYNAMITGYSHMNDGHSAIELFRAMRWANFQPDDFTFASVLSASTLIFYDERQCGQMH 171

Query: 295 GRFME-ALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVK-NGFVVDGV 352
           G  ++  +E+   +L  + L +     ++   V+  +++   R +   + K N F+    
Sbjct: 172 GTVVKFGIEIFPAVL--NALLSVYVKCASSPLVSSSSLMASARKLFDEMPKRNEFI---- 225

Query: 353 LGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG 412
             T LI  Y + G +  A  +   ++++    W AMI G   HG+   AL LF KM  +G
Sbjct: 226 -WTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLG 284

Query: 413 MKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHY----GCLVDILCRTGY 468
           ++    T+  V++AC+  G    G++    ++ +  + P  +        L+ +  + G 
Sbjct: 285 VQVDESTYTSVISACADGGFFLLGKQVHAYILKN-ELNPDRDFLLSVGNTLITLYWKYGK 343

Query: 469 LEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNI 528
           ++ A+     MP++ + + W +LLSG  N G     E A +   ++    +  + V+ + 
Sbjct: 344 VDGARKIFYEMPVK-DIITWNTLLSGYVNAGRM---EEAKSFFAQMPEKNLLTWTVMISG 399

Query: 529 YAAAGQWDKVSEVREMMKKRGFRKD 553
            A  G  ++  ++   MK  G+  +
Sbjct: 400 LAQNGFGEQALKLFNQMKLDGYEPN 424


>gi|357124213|ref|XP_003563798.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 637

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 238/562 (42%), Positives = 343/562 (61%), Gaps = 10/562 (1%)

Query: 137 AIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLID 196
           ++  G+Q+HG +   G G D  + + LV +YA  G +   RR+FD M  +++  WN LI 
Sbjct: 77  SLGTGRQLHGRLLVSGLGPDTVLATKLVDLYAACGLVGHARRLFDGMPKRNVFLWNVLIR 136

Query: 197 GYVKKGEVEVAMKLFDEMPD----RDLFSWTCLVDGFSKCGKVEIAREIFYRMPN----R 248
            Y + G  EVA++L+  M D     D F++   +   +    +E  RE+  R+       
Sbjct: 137 AYARDGPHEVAIQLYRGMVDYGVEPDNFTYPLALKACAALLDLETGREVHERVLGTHWGE 196

Query: 249 NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETML 308
           ++     +++ Y K G VD A  +FD + +RD + WNSMIA Y  NGR MEAL L   M 
Sbjct: 197 DMFVCAGLVDMYAKCGCVDDARAVFDRIRVRDSVVWNSMIAAYGQNGRPMEALSLCRDMA 256

Query: 309 IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIE 368
              V P  ATLVS +SA A  A L +GR +H +  + GF     L T L+ MY+K G ++
Sbjct: 257 ANGVGPTIATLVSTISAAADAAALPRGRELHGFGWRRGFDRQDKLKTSLVDMYAKSGWVQ 316

Query: 369 SALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKM-CRMGMKPTAITFIGVLNAC 427
            A  +F  + K+++  W AMI G GMHG   +AL LFNKM     + P  ITF+GVL+AC
Sbjct: 317 VARVLFEQLMKRELVSWNAMICGYGMHGHFDEALKLFNKMRVEAQVTPDNITFVGVLSAC 376

Query: 428 SHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVI 487
           +H G+V + + +F +M++ Y I+PT++H+ CLVD+L   G  EEA   I+ MPM+P+  I
Sbjct: 377 NHGGMVKEAKEFFGLMVDVYSIKPTVQHFTCLVDVLGHAGRFEEAYDLIKGMPMQPDSGI 436

Query: 488 WMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547
           W +LL+G + H N ++GE A   LI++ P+  G YV+LSNIYA +G+W+K + VR++M  
Sbjct: 437 WGALLNGCKIHKNVELGELALQKLIELEPEDAGNYVLLSNIYAQSGKWEKAARVRKLMTN 496

Query: 548 RGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLC 607
           RG +K  G S IE +G  H F+VGD SHP++ EI+ +L  +   +  AG++PDT  V   
Sbjct: 497 RGLKKIIGCSWIELKGKTHGFLVGDASHPRSAEIYEELERLEGLMSDAGYMPDTMPVFHD 556

Query: 608 IEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREI 667
           + D  EK   + +HSERLAIAFGLI+  S + + + KNLRVC DCH V KL+S I  REI
Sbjct: 557 VGDD-EKRNMMRSHSERLAIAFGLISTPSGTKLLVTKNLRVCEDCHVVIKLISQIVQREI 615

Query: 668 IVRDNSRFHHFKNGSCSCKDFW 689
           I+RD +R+HHF NG CSCKD+W
Sbjct: 616 IIRDVNRYHHFVNGECSCKDYW 637



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 84/180 (46%), Gaps = 2/180 (1%)

Query: 320 VSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK 379
            S L +      L  GR +H  ++ +G   D VL T L+ +Y+ CG +  A  +F  + K
Sbjct: 66  TSVLQSCVASRSLGTGRQLHGRLLVSGLGPDTVLATKLVDLYAACGLVGHARRLFDGMPK 125

Query: 380 KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRY 439
           + V  W  +I      G    A+ L+  M   G++P   T+   L AC+    +  GR  
Sbjct: 126 RNVFLWNVLIRAYARDGPHEVAIQLYRGMVDYGVEPDNFTYPLALKACAALLDLETGREV 185

Query: 440 FNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
              ++  +  E      G LVD+  + G +++A++  + + +R + V+W S+++    +G
Sbjct: 186 HERVLGTHWGEDMFVCAG-LVDMYAKCGCVDDARAVFDRIRVR-DSVVWNSMIAAYGQNG 243


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 239/662 (36%), Positives = 397/662 (59%), Gaps = 15/662 (2%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +QLH   +K+     + + + L++ Y+  H   +  AR +FD + +   ++ +N +I  Y
Sbjct: 215 EQLHGYILKSGFGERNSVGNSLVAFYLKNH--RVDSARKVFDEMTER-DVISWNSIINGY 271

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
           V N  + + L++F  +L   +  D  T+  V  G A    I  G+ +H    K  F  + 
Sbjct: 272 VSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSRED 331

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
              ++L+ MY+K G++D  + VF  M  + +VS+  +I GY ++G    A+KLF+EM + 
Sbjct: 332 RFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEE 391

Query: 218 ----DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNL-----VSWNAMINGYMKAGDVDS 268
               D+++ T +++  ++   ++  + +   +   ++     VS NA+++ Y K G +  
Sbjct: 392 GISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVS-NALMDMYAKCGSMRE 450

Query: 269 ACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL-PNDATLVSALSAVA 327
           A  +F +M ++D+I+WN++I GY  N    EAL L   +L+     P++ T+   L A A
Sbjct: 451 AELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACA 510

Query: 328 GLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTA 387
            L+  +KGR +H YI++NG+  D  +   L+ MY+KCG++  A  +F  I+ K +  WT 
Sbjct: 511 SLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDITSKDLVSWTV 570

Query: 388 MIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDY 447
           MI G GMHG   +A+ LFN+M + G++P  I+F+ +L ACSH+GLV++G R+FN+M ++ 
Sbjct: 571 MIAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRFFNIMRHEC 630

Query: 448 GIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYA 507
            IEPT+EHY C+VD+L RTG L +A   IE+MP+ P+  IW +LL G R H +  + E  
Sbjct: 631 KIEPTVEHYACIVDMLARTGNLSKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAERV 690

Query: 508 ANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHE 567
           A  + ++ P+  G YV+++NIYA A +W++V  +R+ + +RG RK+PG S IE +G ++ 
Sbjct: 691 AEKVFELEPENTGYYVLMANIYAEAEKWEEVKRLRKRIGQRGLRKNPGCSWIEIKGRVNI 750

Query: 568 FVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAI 627
           FV GD S+P+T++I + L  +R ++   G+ P T   L+  E+  EKE  L  HSE+LA+
Sbjct: 751 FVAGDSSNPETEKIEAFLRGVRARMIEEGYSPLTKYALIDAEEM-EKEEALCGHSEKLAM 809

Query: 628 AFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKD 687
           A G+I+      IR+ KNLRVC DCH + K +S +  REI++RD++RFH FK+G CSC+ 
Sbjct: 810 ALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRG 869

Query: 688 FW 689
           FW
Sbjct: 870 FW 871



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 140/505 (27%), Positives = 244/505 (48%), Gaps = 26/505 (5%)

Query: 31  SSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLY 90
           S + K+ +++         +  S + S+L  +Y +    +L  A  +FD++    +L  +
Sbjct: 107 SKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTN--CGDLKEASRVFDQVKIEKAL-FW 163

Query: 91  NLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFK 150
           N+L+     +     ++ LF  ++   +  D++T  CV K  + L ++  G+Q+HG + K
Sbjct: 164 NILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGYILK 223

Query: 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
            GFG    V +SLV+ Y K   +D  R+VFD M ++D++SWN +I+GYV  G  E  + +
Sbjct: 224 SGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSV 283

Query: 211 FDEMPDRDLFS-----WTCLVDGFSKCGK---VEIAREI----FYRMPNRNLVSWNAMIN 258
           F +M    LFS        +V  F+ C     + + R +         +R     N +++
Sbjct: 284 FVQM----LFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDRFCNTLLD 339

Query: 259 GYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDAT 318
            Y K GD+DSA  +F +M  R ++++ SMIAGY   G   EA++L E M    + P+  T
Sbjct: 340 MYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYT 399

Query: 319 LVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS 378
           + + L+  A   +L++G+ +H +I +N    D  +   L+ MY+KCGS+  A  VF  + 
Sbjct: 400 VTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAELVFSEMR 459

Query: 379 KKKVGHWTAMIVGLGMHGMATQALDLFN-KMCRMGMKPTAITFIGVLNACSHAGLVNDGR 437
            K +  W  +I G   +  A +AL LFN  +      P   T   VL AC+     + GR
Sbjct: 460 VKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASLSAFDKGR 519

Query: 438 RYFN-MMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGAR 496
                +M N Y  +  + +   LVD+  + G L  A+   + +  + + V W  +++G  
Sbjct: 520 EIHGYIMRNGYFSDRHVAN--SLVDMYAKCGALLLARLLFDDITSK-DLVSWTVMIAGYG 576

Query: 497 NH--GNKDIGEYAANNLIKVAPDTI 519
            H  G + I  +       + PD I
Sbjct: 577 MHGFGKEAIALFNQMRQAGIEPDEI 601



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 131/451 (29%), Positives = 233/451 (51%), Gaps = 28/451 (6%)

Query: 121 DNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVF 180
           D  TL  V++  A   ++K+GK++   +   GF  D  + S L  MY   G++    RVF
Sbjct: 93  DPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVF 152

Query: 181 DAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM----PDRDLFSWTCLVDGFSKCGKVE 236
           D +  +  + WN L++   K G+   ++ LF +M     + D ++++C+   FS    V 
Sbjct: 153 DQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVN 212

Query: 237 IAREIF-YRMPN----RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGY 291
              ++  Y + +    RN V  N+++  Y+K   VDSA ++FD+M  RD+I+WNS+I GY
Sbjct: 213 GGEQLHGYILKSGFGERNSVG-NSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGY 271

Query: 292 ELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDG 351
             NG   + L +   ML   +  + AT+VS  +  A   +++ GR +H + VK  F  + 
Sbjct: 272 VSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSRED 331

Query: 352 VLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRM 411
                L+ MYSKCG ++SA  VFR +S + V  +T+MI G    G+A +A+ LF +M   
Sbjct: 332 RFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEE 391

Query: 412 GMKPTAITFIGVLNACSHAGLVNDGRRYFNMMI-NDYGIEPTIEHYGCLVDILCRTGYLE 470
           G+ P   T   VLN C+   L+++G+R    +  ND G +  + +   L+D+  + G + 
Sbjct: 392 GISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSN--ALMDMYAKCGSMR 449

Query: 471 EAKSTIESMPMRPNFVIWMSLLSG-ARN-HGNKDIGEYAANNLI----KVAPD--TIGCY 522
           EA+     M ++ + + W +++ G ++N + N+ +  +   NL+    + +PD  T+ C 
Sbjct: 450 EAELVFSEMRVK-DIISWNTVIGGYSKNCYANEALSLF---NLLLVEKRFSPDERTVACV 505

Query: 523 VVLSNIYAAAGQWDKVSEVREMMKKRGFRKD 553
           +      A+   +DK  E+   + + G+  D
Sbjct: 506 LPAC---ASLSAFDKGREIHGYIMRNGYFSD 533



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 106/227 (46%), Gaps = 6/227 (2%)

Query: 279 RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWM 338
           R +   N+ +  +  +G    A++LL      D+ P   TL S L   A    L  G+ +
Sbjct: 59  RSVTDANTQLRRFCESGNLKNAVKLLHVSGKWDIDPR--TLCSVLQLCADSKSLKDGKEV 116

Query: 339 HSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMA 398
            ++I  NGFV+D  LG+ L  MY+ CG ++ A  VF  +  +K   W  ++  L   G  
Sbjct: 117 DNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVFDQVKIEKALFWNILMNELAKSGDF 176

Query: 399 TQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIND-YGIEPTIEHYG 457
           + ++ LF KM   G++  + TF  V  + S    VN G +    ++   +G   ++ +  
Sbjct: 177 SGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGYILKSGFGERNSVGN-- 234

Query: 458 CLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIG 504
            LV    +   ++ A+   + M  R + + W S+++G  ++G  + G
Sbjct: 235 SLVAFYLKNHRVDSARKVFDEMTER-DVISWNSIINGYVSNGLAEKG 280


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 238/649 (36%), Positives = 373/649 (57%), Gaps = 21/649 (3%)

Query: 43  LSVKTNLIYHSGISSRLLSLYVDPHINN--LHYARSIFDRILQHPSLVLYNLLIKCYVFN 100
           + V+ ++ Y+  ISS         H N+  +  AR  FD +      V +N ++  YV N
Sbjct: 1   MPVRDSVTYNVMISS---------HANHGLVSLARHYFD-LAPEKDAVSWNGMLAAYVRN 50

Query: 101 QRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVL 160
            R  EA  LF    +     D  +   ++ G  + G + E +++    F    G D    
Sbjct: 51  GRVEEARGLFNSRTEW----DVISWNALMSGYVQWGKMSEAREL----FDRMPGRDVVSW 102

Query: 161 SSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLF 220
           + +VS YA+ G++   RR+FDA   +D+ +W  ++ GY + G +E A ++FD MP+R+  
Sbjct: 103 NIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAV 162

Query: 221 SWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRD 280
           SW  +V  + +   ++ A+E+F  MP RN+ SWN M+ GY +AG ++ A  +FD M  +D
Sbjct: 163 SWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKD 222

Query: 281 LITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHS 340
            ++W +M+A Y   G   E L+L   M       N +     LS  A +A L  G  +H 
Sbjct: 223 AVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHG 282

Query: 341 YIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQ 400
            +++ G+ V   +G  L+ MY KCG++E A   F  + ++ V  W  MI G   HG   +
Sbjct: 283 RLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKE 342

Query: 401 ALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLV 460
           AL++F+ M     KP  IT +GVL ACSH+GLV  G  YF  M +D+G+    EHY C++
Sbjct: 343 ALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMI 402

Query: 461 DILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIG 520
           D+L R G L EA   ++ MP  P+  +W +LL  +R H N ++G  AA  + ++ P+  G
Sbjct: 403 DLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAG 462

Query: 521 CYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDE 580
            YV+LSNIYA++G+W    ++R MM++RG +K PG S IE +  +H F  GD  HP+ ++
Sbjct: 463 MYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEK 522

Query: 581 IHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPI 640
           I++ L ++  ++K AG+V  T  VL  +E++ EKE  L+ HSE+LA+A+G++N+    PI
Sbjct: 523 IYAFLEDLDMRMKKAGYVSATDMVLHDVEEE-EKEHMLKYHSEKLAVAYGILNIPPGRPI 581

Query: 641 RIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           R++KNLRVC DCH+  K +S I  R I++RD++RFHHF+ GSCSC D+W
Sbjct: 582 RVIKNLRVCGDCHNAFKYISAIEGRLILLRDSNRFHHFRGGSCSCGDYW 630


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 243/664 (36%), Positives = 389/664 (58%), Gaps = 19/664 (2%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +Q+H   V+        +++  +++YV     +++YAR +F + ++   L+ +N +I   
Sbjct: 317 KQIHGAVVRFGWDQFVSVANSAINMYVKA--GSVNYARRMFGQ-MKEVDLISWNTVISGC 373

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLG-AIKEGKQIHGLVFKLGFGFD 156
             +     +L LF DLL   LLPD FT+  V++  + L  +   G+Q+H    K G   D
Sbjct: 374 ARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIVLD 433

Query: 157 KFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD 216
            FV ++L+ +Y+K G+++    +F   D  DL SWN ++ G+        A++LF  M +
Sbjct: 434 SFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHE 493

Query: 217 R----DLFSWT-------CLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGD 265
           R    D  ++        CLV    + GK   A  I  R  + +L   + +++ Y+K G+
Sbjct: 494 RGEKADQITFANAAKAAGCLVR--LQQGKQIHAVVIKMRF-HYDLFVISGILDMYLKCGE 550

Query: 266 VDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSA 325
           + SA ++F+ +   D + W ++I+G   NG   +AL     M +  V P++ T  + + A
Sbjct: 551 MKSARKVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKA 610

Query: 326 VAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHW 385
            + L  L +G+ +H+ I+K     D  + T L+ MY+KCG+IE A  +FR ++ + V  W
Sbjct: 611 CSLLTALEQGKQIHANIMKLNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVALW 670

Query: 386 TAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN 445
            AMIVGL  HG A +AL+ FN+M   G+ P  +TFIGVL+ACSH+GL +D  + F+ M  
Sbjct: 671 NAMIVGLAQHGNAEEALNFFNEMKSRGVTPDRVTFIGVLSACSHSGLTSDAYKNFDSMQK 730

Query: 446 DYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGE 505
            YG+EP IEHY CLVD L R G+++EA+  + SMP   +  ++ +LL+  R  G+K+ GE
Sbjct: 731 TYGVEPEIEHYSCLVDALSRAGHIQEAEKVVSSMPFEASATMYRTLLNACRVQGDKETGE 790

Query: 506 YAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVL 565
             A  L  + P     YV+LSNIYAAA QW+     R MMK+   +K+PG S I+ +  +
Sbjct: 791 RVAEKLFTMDPSDSAAYVLLSNIYAAANQWENAVSARNMMKRVNVKKEPGFSWIDMKNKV 850

Query: 566 HEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERL 625
           H FV GD+SH +TD I++K+  +  ++K  G+VPDT   L+ IE++ +KE+ L  HSE+L
Sbjct: 851 HLFVAGDRSHEETDLIYNKVEYVMKRIKEEGYVPDTEFALVDIEEE-DKESALSYHSEKL 909

Query: 626 AIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSC 685
           AIA+GL+     + +R++KNLRVC DCH+  K +S ++ REI++RD +RFHHF++G CSC
Sbjct: 910 AIAYGLMKTPPSTTLRVIKNLRVCGDCHNAIKYISNVFQREIVLRDANRFHHFRSGICSC 969

Query: 686 KDFW 689
            D+W
Sbjct: 970 GDYW 973



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 140/527 (26%), Positives = 229/527 (43%), Gaps = 92/527 (17%)

Query: 87  LVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHG 146
           + ++N  +  Y+      EA+  F D++   +  D+ T   ++   A L  ++ GKQIHG
Sbjct: 262 VTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHG 321

Query: 147 LVFKLGFGFDKFV--LSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEV 204
            V +  FG+D+FV   +S ++MY K G ++  RR+F  M + DL+SWN +I G  + G  
Sbjct: 322 AVVR--FGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLE 379

Query: 205 EVAMKLFDE------MPDR----------------------------------DLFSWTC 224
           E +++LF +      +PD+                                  D F  T 
Sbjct: 380 ECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFVSTA 439

Query: 225 LVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITW 284
           L+D +SK GK+E A  +F+     +L SWNAM++G+                        
Sbjct: 440 LIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFT----------------------- 476

Query: 285 NSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVK 344
                   ++  + EAL L   M       +  T  +A  A   L  L +G+ +H+ ++K
Sbjct: 477 --------VSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIK 528

Query: 345 NGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDL 404
             F  D  + + ++ MY KCG ++SA  VF  I       WT +I G   +G   QAL  
Sbjct: 529 MRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVENGEEEQALFT 588

Query: 405 FNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR-YFNMMINDYGIEPTIEHYGCLVDIL 463
           +++M   G++P   TF  ++ ACS    +  G++ + N+M  +   +P +     LVD+ 
Sbjct: 589 YHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFV--MTSLVDMY 646

Query: 464 CRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAAN--NLIK---VAPDT 518
            + G +E+A      M  R +  +W +++ G   HGN    E A N  N +K   V PD 
Sbjct: 647 AKCGNIEDAYGLFRRMNTR-SVALWNAMIVGLAQHGN---AEEALNFFNEMKSRGVTPDR 702

Query: 519 IGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVL 565
           +    VLS    +    D       M K  G   +     IEH   L
Sbjct: 703 VTFIGVLSACSHSGLTSDAYKNFDSMQKTYGVEPE-----IEHYSCL 744



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 149/617 (24%), Positives = 245/617 (39%), Gaps = 82/617 (13%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHP-SLVLYNLLIKC 96
           ++ HA+ V + L     +++ L+++Y      +L  AR +FD   Q    LV YN ++  
Sbjct: 33  KRTHAVIVTSGLNPDRYVTNNLITMYAK--CGSLFSARKLFDITPQSDRDLVTYNAILAA 90

Query: 97  YVFN------QRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFK 150
           Y         +++HEA  +F  L    +L    TL  + K     G+    + + G   K
Sbjct: 91  YAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGYAVK 150

Query: 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
           +G  +D FV  +LV++YAKF  I   R +FD M  +D+V WN ++  YV+ G  +  + L
Sbjct: 151 IGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGL 210

Query: 211 FDEMPDR----DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDV 266
           F          D  S   ++ G  K  K    RE+               +  Y      
Sbjct: 211 FSAFHRSGLRPDCVSVRTILMGVGK--KTVFEREL-------------EQVRAY------ 249

Query: 267 DSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326
             A +LF   +  D+  WN  ++ Y   G   EA++    M+   V  +  T +  LS V
Sbjct: 250 --ATKLFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVV 307

Query: 327 AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWT 386
           A L  L  G+ +H  +V+ G+     +    I MY K GS+  A  +F  + +  +  W 
Sbjct: 308 ASLNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWN 367

Query: 387 AMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIND 446
            +I G    G+   +L LF  + R G+ P   T   VL ACS         R  +     
Sbjct: 368 TVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALK 427

Query: 447 YGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGN------ 500
            GI         L+D+  + G +EEA+    +     +   W +++ G     N      
Sbjct: 428 AGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQD-GFDLASWNAMMHGFTVSDNYREALR 486

Query: 501 -----KDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPG 555
                 + GE A       A    GC V L           +  ++  ++ K  F  D  
Sbjct: 487 LFSLMHERGEKADQITFANAAKAAGCLVRLQ----------QGKQIHAVVIKMRFHYDLF 536

Query: 556 SSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPD------TTQVLLCIE 609
             S    G+L              +++ K  EM++  K    +P       TT +  C+E
Sbjct: 537 VIS----GIL--------------DMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVE 578

Query: 610 DQKEKEAELENHSERLA 626
           + +E++A    H  RLA
Sbjct: 579 NGEEEQALFTYHQMRLA 595



 Score = 45.8 bits (107), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 86/204 (42%), Gaps = 12/204 (5%)

Query: 335 GRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAI--SKKKVGHWTAMIVGL 392
           G+  H+ IV +G   D  +   LI MY+KCGS+ SA  +F     S + +  + A++   
Sbjct: 32  GKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNAILAAY 91

Query: 393 GMHG------MATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIND 446
              G         +A  +F  + +  M  T  T   +   C   G  +         +  
Sbjct: 92  AHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGYAVK- 150

Query: 447 YGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKD--IG 504
            G++  +   G LV+I  +   + EA+   + MP+R + V+W  ++      G  D  +G
Sbjct: 151 IGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVR-DVVLWNVMMKAYVEMGAGDEVLG 209

Query: 505 EYAANNLIKVAPDTIGCYVVLSNI 528
            ++A +   + PD +    +L  +
Sbjct: 210 LFSAFHRSGLRPDCVSVRTILMGV 233


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 237/606 (39%), Positives = 365/606 (60%), Gaps = 11/606 (1%)

Query: 90  YNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVF 149
           +N +I  +  N  +  AL +   +    +  D  T+  ++   A+   +  G  IH  V 
Sbjct: 190 WNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVL 249

Query: 150 KLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMK 209
           K G   D FV ++L++MY+KFG +   + VFD M+ +DLVSWN +I  Y +  +   A++
Sbjct: 250 KHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALR 309

Query: 210 LFDEMP----DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR-----NLVSWNAMINGY 260
            F  M       DL +   L   FS+     I+R I   +  R     ++V  NA++N Y
Sbjct: 310 FFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMY 369

Query: 261 MKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETML-IGDVLPNDATL 319
            K G ++ A  +FD +  +D I+WN+++ GY  NG   EA++    M    D +PN  T 
Sbjct: 370 AKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTW 429

Query: 320 VSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK 379
           VS + A + +  L +G  +H+ ++KN   +D  + T LI +Y KCG +E A+++F  I +
Sbjct: 430 VSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPR 489

Query: 380 KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRY 439
                W A+I  LG+HG   +AL LF  M    +K   ITF+ +L+ACSH+GLV++G++ 
Sbjct: 490 DTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKC 549

Query: 440 FNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
           F++M  +YGI+P+++HYGC+VD+L R GYLE+A   + +MP++P+  IW +LLS  + +G
Sbjct: 550 FDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYG 609

Query: 500 NKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSI 559
           N ++G  A++ L++V  + +G YV+LSNIYA   +W+ V +VR + + RG RK PG SS+
Sbjct: 610 NAELGTLASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSV 669

Query: 560 EHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELE 619
                   F  G+++HP+  EI+ +L  +  K+K+ G+VPD + V   IE+  EKE  L 
Sbjct: 670 VVGSKAEVFYTGNQTHPKYTEIYKELKVLSAKMKSLGYVPDYSFVYQDIEED-EKEQILN 728

Query: 620 NHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFK 679
           +HSERLAIAFG+I+   RSPIRI KNLRVC DCH+ TK +S I  REI+VRD++RFHHFK
Sbjct: 729 SHSERLAIAFGIISTPPRSPIRIFKNLRVCGDCHNATKYISRISEREIVVRDSNRFHHFK 788

Query: 680 NGSCSC 685
           +G CSC
Sbjct: 789 DGICSC 794



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 144/478 (30%), Positives = 245/478 (51%), Gaps = 24/478 (5%)

Query: 37  TQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKC 96
           T++LHAL +      +  +S++L++LYV     ++  +RS FD I    ++  +N +I  
Sbjct: 38  TKKLHALLLVFGKSQNIVLSTKLINLYVTH--GDISLSRSTFDYI-HKKNIFSWNSIISA 94

Query: 97  YVFNQRSHEALTLFCDLLDR----FLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLG 152
           YV   + HEA+     L        L PD +T P ++K    L    +GK++H  VFK+G
Sbjct: 95  YVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSL---VDGKKVHCCVFKMG 151

Query: 153 FGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFD 212
           F  D FV +SLV +Y+++G +D+  +VF  M  KD+ SWN +I G+ + G    A+ + +
Sbjct: 152 FEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLN 211

Query: 213 EMPDRDLFSWTCLVDG-FSKCGK-------VEIAREIFYRMPNRNLVSWNAMINGYMKAG 264
            M    +   T  V      C +       V I   +     + ++   NA+IN Y K G
Sbjct: 212 RMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFG 271

Query: 265 DVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS 324
            +  A  +FD ME+RDL++WNS+IA YE N     AL   + M +G + P+  T+VS  S
Sbjct: 272 RLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTS 331

Query: 325 AVAGLAVLNKGRWMHSYIVKNGFV-VDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVG 383
             + L+     R +  ++++  ++  D V+G  L+ MY+K G +  A TVF  + +K   
Sbjct: 332 IFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTI 391

Query: 384 HWTAMIVGLGMHGMATQALDLFNKM--CRMGMKPTAITFIGVLNACSHAGLVNDGRRYFN 441
            W  ++ G   +G+A++A+D +N M  CR  + P   T++ ++ A SH G +  G +   
Sbjct: 392 SWNTLVTGYTQNGLASEAIDAYNMMEECRDTI-PNQGTWVSIIPAYSHVGALQQGMKIHA 450

Query: 442 MMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
            +I +  +   +    CL+D+  + G LE+A S    +P R   V W ++++    HG
Sbjct: 451 KLIKN-SLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIP-RDTSVPWNAIIASLGIHG 506



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 106/436 (24%), Positives = 199/436 (45%), Gaps = 30/436 (6%)

Query: 138 IKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDG 197
           +   K++H L+   G   +  + + L+++Y   G+I L R  FD +  K++ SWN +I  
Sbjct: 35  VNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISA 94

Query: 198 YVKKGEVEVAMKLFDEM----------PDRDLF-----SWTCLVDGFSKCGKVEIAREIF 242
           YV+ G+   AM   +++          PD   F     +   LVDG     KV     +F
Sbjct: 95  YVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVDG----KKVHCC--VF 148

Query: 243 YRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALE 302
                 ++    ++++ Y + G +D A ++F DM ++D+ +WN+MI+G+  NG    AL 
Sbjct: 149 KMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALG 208

Query: 303 LLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYS 362
           +L  M    V  +  T+ S L   A    +  G  +H +++K+G   D  +   LI MYS
Sbjct: 209 VLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYS 268

Query: 363 KCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIG 422
           K G ++ A  VF  +  + +  W ++I     +   + AL  F  M   G++P  +T + 
Sbjct: 269 KFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVS 328

Query: 423 VLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMR 482
           + +  S        R     +I    ++  +     LV++  + GY+  A +  + +P R
Sbjct: 329 LTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLP-R 387

Query: 483 PNFVIWMSLLSGARNHG--NKDIGEYAANNLIKVAPDTI---GCYVVLSNIYAAAGQWDK 537
            + + W +L++G   +G  ++ I  Y   N+++   DTI   G +V +   Y+  G   +
Sbjct: 388 KDTISWNTLVTGYTQNGLASEAIDAY---NMMEECRDTIPNQGTWVSIIPAYSHVGALQQ 444

Query: 538 VSEVREMMKKRGFRKD 553
             ++   + K     D
Sbjct: 445 GMKIHAKLIKNSLYLD 460


>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 632

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 259/680 (38%), Positives = 381/680 (56%), Gaps = 68/680 (10%)

Query: 12  IHALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRL-LSLYVDPHINN 70
           IH ++      L  ++L+  ++  E +Q+HA  +KTN        +R+ L     P   +
Sbjct: 19  IHNVKPQSSETLKIDLLRNFNSPFELRQVHAQIIKTNAPLSILPLTRVGLVCAFTP---S 75

Query: 71  LHYARSIFDRI-LQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVI 129
            HYA+ IF  +  Q P   ++N  +K         +A+ LF  L    + P         
Sbjct: 76  FHYAQQIFKCVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCP--------- 126

Query: 130 KGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLV 189
                                     D F  SS++       ++  GR            
Sbjct: 127 --------------------------DTFTCSSVLRACLNLLDLSNGR------------ 148

Query: 190 SWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRN 249
               ++ G V+K    V  +        +L+    +V  ++ CG++  AR +F +MP R+
Sbjct: 149 ----ILHGVVEK----VGFR-------SNLYLQNMIVHLYASCGEMGEARLLFEKMPQRD 193

Query: 250 LVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLI 309
           +V+WN MI   +K GD + A +LF  M  R++ +W SMIAGY   G+  EA+ L   M  
Sbjct: 194 VVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEE 253

Query: 310 GDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIES 369
             V  N+ T+V+ L+A A L  L+ G  +H Y  ++GF  +  +   LI MY KCG +E 
Sbjct: 254 AGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEE 313

Query: 370 ALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSH 429
           A  VF  + ++ V  W+AMI GL MHG A +AL LF+ M ++G++P  +TFIG+L+ACSH
Sbjct: 314 ACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSH 373

Query: 430 AGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWM 489
            GL+++GRR+F  M  DYGI P IEHYGC+VD+L R G L EA   I +MPM+PN V+W 
Sbjct: 374 MGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWG 433

Query: 490 SLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRG 549
           +LL   R H N ++ E A  +L+++ P   G YVVLSNIYA AG+W+  + VR+ MK R 
Sbjct: 434 ALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQ 493

Query: 550 FRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIE 609
            +K PG SSI   GV+HEFV G++SHP T++I  +  E+  +++  G+VP+T+ VLL IE
Sbjct: 494 VKKTPGWSSITVDGVVHEFVAGEESHPDTEQIFQRWEELLEEMRLKGYVPNTSVVLLDIE 553

Query: 610 DQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIV 669
            + EK   +  HSE+LA+ FGL+N  + +PIRI+KNLR+C DCHS  KL+S I NREI+V
Sbjct: 554 -EGEKVKFVSRHSEKLALVFGLMNTPAETPIRIMKNLRICEDCHSAFKLISAIVNREIVV 612

Query: 670 RDNSRFHHFKNGSCSCKDFW 689
           RD +RFH F + SCSC+D+W
Sbjct: 613 RDRNRFHCFNDNSCSCRDYW 632


>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
          Length = 665

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 262/672 (38%), Positives = 377/672 (56%), Gaps = 58/672 (8%)

Query: 68  INNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPC 127
           +  L  ARS+ D I         +      V    + EA+  +  +L     PD +T P 
Sbjct: 2   VRALSRARSLLDGIPHRRGRAASS-----SVSGHGAEEAVAGYVRMLAGGARPDAYTFPS 56

Query: 128 VIKGAARLGAIKEGKQ-----IHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFD- 181
           ++K AA               IH  V K G   +    SSL+ MYA  G+    R V + 
Sbjct: 57  LLKAAAAARGAAVAAASVGGAIHAHVVKFGMESNAHAASSLIVMYAARGDGAAARAVLEA 116

Query: 182 ---AMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------------------------ 214
              A      V WN LI G+ + G  E++   F +M                        
Sbjct: 117 ACLATGGGAPVMWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKD 176

Query: 215 -----------------PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMI 257
                            PD+ + +   LVD +++CG ++ A  +F  M  R++ SW ++I
Sbjct: 177 LLLGMQVHKRVLESGVLPDQRVEN--ALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVI 234

Query: 258 NGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDA 317
           +G +++G VD A +LFD M  RD I W +MI GY   GRF +ALE    M I  V  ++ 
Sbjct: 235 SGLVRSGQVDRARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEF 294

Query: 318 TLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAI 377
           T+VS ++A A L  L  G W   Y+ + G  +D  +G  LI MYSKCGSIE AL VF+ +
Sbjct: 295 TMVSVVTACAQLGALETGEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDM 354

Query: 378 SKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGR 437
             +    WTA+I+GL ++G   +A+D+F +M R    P  +TF+GVL AC+HAGLV+ GR
Sbjct: 355 HNRDKFTWTAIILGLAVNGRGEEAIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGR 414

Query: 438 RYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARN 497
            +F  M   Y I PT+ HYGCL+D+L R G L+EA  TI+ MPM+PN  IW +LL+  R 
Sbjct: 415 EFFLSMTEAYNISPTVVHYGCLIDVLGRAGKLKEALDTIDKMPMKPNSTIWGTLLASCRV 474

Query: 498 HGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSS 557
           +GN +IGE AA  L+++ PD    Y++LSN+YA + +W  V  +R+++ ++G +K+PG S
Sbjct: 475 YGNSEIGELAAERLLELDPDNSTAYILLSNMYAKSNRWKDVRRIRQIIMEKGIKKEPGCS 534

Query: 558 SIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAE 617
            IE  G++HEFV  D+SHP   EI+SKL  +   L+ AG+VPD T+VL+    ++EK+  
Sbjct: 535 MIEMNGIIHEFVAADRSHPMNKEIYSKLENVLTDLRNAGYVPDVTEVLV-EVTEEEKQKV 593

Query: 618 LENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHH 677
           L  HSE+LA+ F L+  +S   IRIVKNLR+C DCH+  KL+S +Y RE+IVRD +RFHH
Sbjct: 594 LYWHSEKLAVTFALLTSESNVIIRIVKNLRMCLDCHNAIKLISKLYGREVIVRDRTRFHH 653

Query: 678 FKNGSCSCKDFW 689
           F++GSCSCKD+W
Sbjct: 654 FRHGSCSCKDYW 665


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 216/474 (45%), Positives = 310/474 (65%), Gaps = 1/474 (0%)

Query: 216 DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDD 275
           + D+   T LV  +++CG +E A  +F +M  R+  +WNAMI G+ +  D+  A +LF +
Sbjct: 42  ESDVVVQTALVHMYARCGSLEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYE 101

Query: 276 MEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKG 335
           M  RD+++W ++IAGY  NG   E+L +   M    +  +   + S LSA A LA L  G
Sbjct: 102 MSERDVVSWTAVIAGYAQNGYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELG 161

Query: 336 RWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMH 395
           R  H+Y+V++GF +D V+G+ L+ MY+K GS+E A  VF  + ++    W ++I G   H
Sbjct: 162 RQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQH 221

Query: 396 GMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEH 455
           G    A+ LF +M + G+KP  I+F+GVL+ACSH GLVN+GR YFN+M  +YGI P + H
Sbjct: 222 GRGNDAVLLFEQMLQAGIKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSH 281

Query: 456 YGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVA 515
           Y C++D+L R G L+EA++ I  MP+ P+  +W +LL   R HGN ++ +  A +L+ + 
Sbjct: 282 YTCMIDLLGRAGCLDEAENFINGMPVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGME 341

Query: 516 PDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSH 575
               G YV+LSNIYAAAGQWD  ++VR++MK RG  K PG S IE + ++H FV G+ SH
Sbjct: 342 VQIAGIYVLLSNIYAAAGQWDDAAKVRKLMKDRGVMKQPGYSWIEVKTIMHAFVAGETSH 401

Query: 576 PQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVK 635
           PQ  EIH  L  +  K+KAAG+VP+   VL  +ED  EKE  L +HSE+LAIAFG+IN  
Sbjct: 402 PQLKEIHEFLESLSRKMKAAGYVPNKNFVLQDVEDD-EKELSLSHHSEKLAIAFGIINTN 460

Query: 636 SRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
             + IR+ KNLRVC DCH+V K +S  + R+I+VRD +RFHHFK+G CSC D+W
Sbjct: 461 PGTTIRVAKNLRVCGDCHTVIKFISLNFTRKIVVRDANRFHHFKDGRCSCGDYW 514



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 100/378 (26%), Positives = 189/378 (50%), Gaps = 43/378 (11%)

Query: 113 LLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGE 172
           ++ + + P+ FTL  V+K  A + ++++GKQ H  + K+GF  D  V ++LV MYA+ G 
Sbjct: 1   MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGS 60

Query: 173 IDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKC 232
           ++    VFD M ++   +WN +I G+ +  +++ A+KLF EM +RD+ SWT ++ G+++ 
Sbjct: 61  LEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQN 120

Query: 233 GKVEIAREIFYRMPNR---------------------------------------NLVSW 253
           G  + +  +F +M                                          ++V  
Sbjct: 121 GYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVG 180

Query: 254 NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL 313
           +A+++ Y K+G ++ AC++FD M  R+ ++WNS+I G   +GR  +A+ L E ML   + 
Sbjct: 181 SALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIK 240

Query: 314 PNDATLVSALSAVAGLAVLNKGRWMHSYIVKN-GFVVDGVLGTLLIQMYSKCGSIESALT 372
           PN+ + V  LSA +   ++N+GR   + + +N G V D    T +I +  + G ++ A  
Sbjct: 241 PNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAEN 300

Query: 373 VFRAIS-KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAG 431
               +  +  V  W A++    +HG    A  +   +  M ++   I ++ + N  + AG
Sbjct: 301 FINGMPVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGI-YVLLSNIYAAAG 359

Query: 432 LVNDGRRYFNMMINDYGI 449
             +D  +   +M  D G+
Sbjct: 360 QWDDAAKVRKLM-KDRGV 376



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 131/286 (45%), Gaps = 14/286 (4%)

Query: 56  SSRLLSLYVDPHINN--LHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDL 113
           S+R  +  +  H  N  +  A  +F  + +   +V +  +I  Y  N    E+L +F  +
Sbjct: 75  STRTWNAMITGHAQNRDMKKALKLFYEMSER-DVVSWTAVIAGYAQNGYGDESLNVFNQM 133

Query: 114 LDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEI 173
               +  D F +  V+   A L A++ G+Q H  V + GF  D  V S+LV MYAK G +
Sbjct: 134 RKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALVDMYAKSGSM 193

Query: 174 DLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGF 229
           +   +VFD M  ++ VSWN +I G  + G    A+ LF++M    +     S+  ++   
Sbjct: 194 EDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEISFVGVLSAC 253

Query: 230 SKCGKVEIAREIFYRMPNR-----NLVSWNAMINGYMKAGDVDSACELFDDMEIR-DLIT 283
           S  G V   R  F  M        ++  +  MI+   +AG +D A    + M +  D+  
Sbjct: 254 SHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGMPVEPDVSV 313

Query: 284 WNSMIAGYELNGRFMEALELLETMLIGDV-LPNDATLVSALSAVAG 328
           W +++    ++G    A  + E +L  +V +     L+S + A AG
Sbjct: 314 WGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIYVLLSNIYAAAG 359



 Score = 44.3 bits (103), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 63/146 (43%), Gaps = 5/146 (3%)

Query: 408 MCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTG 467
           M   G+KP   T   V+ AC+    +  G++  N +I   G E  +     LV +  R G
Sbjct: 1   MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIK-MGFESDVVVQTALVHMYARCG 59

Query: 468 YLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSN 527
            LE+A    + M  R     W ++++G     N+D+ + A     +++   +  +  +  
Sbjct: 60  SLEDAGHVFDKMSERSTRT-WNAMITGHAQ--NRDM-KKALKLFYEMSERDVVSWTAVIA 115

Query: 528 IYAAAGQWDKVSEVREMMKKRGFRKD 553
            YA  G  D+   V   M+K G + D
Sbjct: 116 GYAQNGYGDESLNVFNQMRKTGMKSD 141


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  454 bits (1167), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 245/664 (36%), Positives = 383/664 (57%), Gaps = 15/664 (2%)

Query: 36  ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIK 95
           E +++H L+V+  L     + + L+++ V     ++  A+  F  I     +V+YN LI 
Sbjct: 247 EGKRIHKLTVEEGLNSDIRVGTALVTMCV--RCGDVDSAKQAFKGIADR-DVVVYNALIA 303

Query: 96  CYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF 155
               +  + EA   +  +    +  +  T   ++   +   A++ GK IH  + + G   
Sbjct: 304 ALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSS 363

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM- 214
           D  + ++L+SMYA+ G++   R +F  M  +DL+SWN +I GY ++ +   AM+L+ +M 
Sbjct: 364 DVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQ 423

Query: 215 -----PDRDLFSW---TCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDV 266
                P R  F      C        GK+ I  +I       N    NA++N Y + G +
Sbjct: 424 SEGVKPGRVTFLHLLSACANSSAYADGKM-IHEDILRSGIKSNGHLANALMNMYRRCGSL 482

Query: 267 DSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326
             A  +F+  + RD+I+WNSMIAG+  +G +  A +L + M   ++ P++ T  S LS  
Sbjct: 483 MEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGC 542

Query: 327 AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWT 386
                L  G+ +H  I ++G  +D  LG  LI MY +CGS++ A  VF ++  + V  WT
Sbjct: 543 KNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWT 602

Query: 387 AMIVGLGMHGMATQALDLFNKMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMIN 445
           AMI G    G   +A++LF +M   G +P    TF  +L+AC+HAGLV +G + F+ M +
Sbjct: 603 AMIGGCADQGEDMKAIELFWQMQNEGFRPPDGSTFTSILSACNHAGLVLEGYQIFSSMES 662

Query: 446 DYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGE 505
           +YG+ PTIEHYGCLV +L R    +EA++ I  MP  P+  +W +LL   R HGN  + E
Sbjct: 663 EYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAE 722

Query: 506 YAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVL 565
           +AANN +K+       Y++LSN+YAAAG+WD V+++R +M+ RG RK+PG S IE   ++
Sbjct: 723 HAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNII 782

Query: 566 HEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERL 625
           HEF+  D+SHP+T EI+++L  +  +++ AG+ PDT  VL  +  +  +E  L  HSERL
Sbjct: 783 HEFIAADRSHPETAEIYAELKRLSVEMEEAGYFPDTQHVLHDL-GKAHQETSLCTHSERL 841

Query: 626 AIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSC 685
           AIA+GLI     +PIRI KNLR+C DCH+ +K +S +  REII RD++RFH FKNG CSC
Sbjct: 842 AIAYGLIKTPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIARDSNRFHSFKNGKCSC 901

Query: 686 KDFW 689
           +D+W
Sbjct: 902 EDYW 905



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 135/506 (26%), Positives = 247/506 (48%), Gaps = 25/506 (4%)

Query: 36  ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFD-----RILQHPSLVLY 90
           E +++HA  V+  +     +S+ L+++YV          RS+ D     + +    ++ +
Sbjct: 45  EAKRIHAQMVEAGVGPDIFLSNLLINMYVK--------CRSVLDAHQVFKEMPRRDVISW 96

Query: 91  NLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFK 150
           N LI CY       +A  LF ++ +   +P+  T   ++        ++ GK+IH  + K
Sbjct: 97  NSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIK 156

Query: 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
            G+  D  V +SL+SMY K G++   R+VF  +  +D+VS+N ++  Y +K  V+  + L
Sbjct: 157 AGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGL 216

Query: 211 FDEMPDR----DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS----WNAMINGYMK 262
           F +M       D  ++  L+D F+    ++  + I        L S      A++   ++
Sbjct: 217 FGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVR 276

Query: 263 AGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSA 322
            GDVDSA + F  +  RD++ +N++IA    +G  +EA E    M    V  N  T +S 
Sbjct: 277 CGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSI 336

Query: 323 LSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKV 382
           L+A +    L  G+ +HS+I ++G   D  +G  LI MY++CG +  A  +F  + K+ +
Sbjct: 337 LNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDL 396

Query: 383 GHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNM 442
             W A+I G        +A+ L+ +M   G+KP  +TF+ +L+AC+++    DG+     
Sbjct: 397 ISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHED 456

Query: 443 MINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKD 502
           ++   GI+        L+++  R G L EA++  E    R + + W S+++G   HG+ +
Sbjct: 457 ILRS-GIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQAR-DVISWNSMIAGHAQHGSYE 514

Query: 503 IGEYAANNLI--KVAPDTIGCYVVLS 526
                   +   ++ PD I    VLS
Sbjct: 515 TAYKLFQEMQNEELEPDNITFASVLS 540



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 98/382 (25%), Positives = 193/382 (50%), Gaps = 10/382 (2%)

Query: 121 DNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVF 180
           D  T   +++   R   + E K+IH  + + G G D F+ + L++MY K   +    +VF
Sbjct: 26  DRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQVF 85

Query: 181 DAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLF----SWTCLVDGFSKCGKVE 236
             M  +D++SWN LI  Y ++G  + A +LF+EM +        ++  ++       ++E
Sbjct: 86  KEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELE 145

Query: 237 IAREIFYRMP----NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYE 292
             ++I  ++      R+    N++++ Y K GD+  A ++F  +  RD++++N+M+  Y 
Sbjct: 146 NGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYA 205

Query: 293 LNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV 352
                 E L L   M    + P+  T ++ L A    ++L++G+ +H   V+ G   D  
Sbjct: 206 QKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIR 265

Query: 353 LGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG 412
           +GT L+ M  +CG ++SA   F+ I+ + V  + A+I  L  HG   +A + + +M   G
Sbjct: 266 VGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDG 325

Query: 413 MKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEA 472
           +     T++ +LNACS +  +  G +  +  I++ G    ++    L+ +  R G L +A
Sbjct: 326 VALNRTTYLSILNACSTSKALEAG-KLIHSHISEDGHSSDVQIGNALISMYARCGDLPKA 384

Query: 473 KSTIESMPMRPNFVIWMSLLSG 494
           +    +MP R + + W ++++G
Sbjct: 385 RELFYTMPKR-DLISWNAIIAG 405


>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
 gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g37380, chloroplastic; Flags: Precursor
 gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
 gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
 gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
          Length = 632

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 266/673 (39%), Positives = 381/673 (56%), Gaps = 72/673 (10%)

Query: 20  PSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLY-VDPHINNLHYARSIF 78
           P +L   I K S +  E  Q+HA  ++ NL+ H       L L+        + ++ ++F
Sbjct: 29  PEKLAVLIDK-SQSVDEVLQIHAAILRHNLLLHPRYPVLNLKLHRAYASHGKIRHSLALF 87

Query: 79  DRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAI 138
            + +  P L L+   I     N    +A  L+  LL   + P+ FT   ++K  +     
Sbjct: 88  HQTID-PDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCS----T 142

Query: 139 KEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGY 198
           K GK IH  V K  FG                                        ID Y
Sbjct: 143 KSGKLIHTHVLK--FGLG--------------------------------------IDPY 162

Query: 199 VKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMIN 258
           V  G                      LVD ++K G V  A+++F RMP R+LVS  AMI 
Sbjct: 163 VATG----------------------LVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMIT 200

Query: 259 GYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLI-GDVLPNDA 317
            Y K G+V++A  LFD M  RD+++WN MI GY  +G   +AL L + +L  G   P++ 
Sbjct: 201 CYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEI 260

Query: 318 TLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAI 377
           T+V+ALSA + +  L  GRW+H ++  +   ++  + T LI MYSKCGS+E A+ VF   
Sbjct: 261 TVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDT 320

Query: 378 SKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRM-GMKPTAITFIGVLNACSHAGLVNDG 436
            +K +  W AMI G  MHG +  AL LFN+M  + G++PT ITFIG L AC+HAGLVN+G
Sbjct: 321 PRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEG 380

Query: 437 RRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGAR 496
            R F  M  +YGI+P IEHYGCLV +L R G L+ A  TI++M M  + V+W S+L   +
Sbjct: 381 IRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCK 440

Query: 497 NHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGS 556
            HG+  +G+  A  LI +     G YV+LSNIYA+ G ++ V++VR +MK++G  K+PG 
Sbjct: 441 LHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGI 500

Query: 557 SSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEA 616
           S+IE    +HEF  GD+ H ++ EI++ L ++  ++K+ G+VP+T  VL  +E + EKE 
Sbjct: 501 STIEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLE-ETEKEQ 559

Query: 617 ELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFH 676
            L+ HSERLAIA+GLI+ K  SP++I KNLRVC+DCH+VTKL+S I  R+I++RD +RFH
Sbjct: 560 SLQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFH 619

Query: 677 HFKNGSCSCKDFW 689
           HF +GSCSC DFW
Sbjct: 620 HFTDGSCSCGDFW 632



 Score = 45.1 bits (105), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 92/214 (42%), Gaps = 18/214 (8%)

Query: 298 MEALELLETMLIGDVLPNDATLVSALSAVAGLAVL-------NKGRWMHSYIVKNGFVVD 350
           M +  LL T L  + L   AT    L     LAVL       ++   +H+ I+++  ++ 
Sbjct: 1   MASSPLLATSLPQNQLSTTATARFRLPPPEKLAVLIDKSQSVDEVLQIHAAILRHNLLLH 60

Query: 351 G---VLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNK 407
               VL   L + Y+  G I  +L +F       +  +TA I    ++G+  QA  L+ +
Sbjct: 61  PRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQ 120

Query: 408 MCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN-DYGIEPTIEHYGCLVDILCRT 466
           +    + P   TF  +L +CS       G+     ++    GI+P +     LVD+  + 
Sbjct: 121 LLSSEINPNEFTFSSLLKSCS----TKSGKLIHTHVLKFGLGIDPYVA--TGLVDVYAKG 174

Query: 467 GYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGN 500
           G +  A+   + MP R + V   ++++     GN
Sbjct: 175 GDVVSAQKVFDRMPER-SLVSSTAMITCYAKQGN 207


>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
 gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
 gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 790

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 250/692 (36%), Positives = 376/692 (54%), Gaps = 76/692 (10%)

Query: 74  ARSIFDRI-LQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGA 132
           AR +F++  +     V+YN +I  +  N   + A+ LFC +      PDNFT   V+ G 
Sbjct: 99  ARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGL 158

Query: 133 ARLGA-IKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAK--------------FGEI---- 173
           A +    K+  Q H    K G G+   V ++LVS+Y+K              F EI    
Sbjct: 159 ALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKD 218

Query: 174 -----------------DLGRRVFDAMDDK-DLVSWNCLIDGYVKKGEVEVAMKLFDEMP 215
                            DLG  + + MDD   LV++N +I GYV +G  + A+++   M 
Sbjct: 219 ERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMV 278

Query: 216 D-----------------------------------RDLFSW---TCLVDGFSKCGKVEI 237
                                               R+ FS+     LV  + KCGK + 
Sbjct: 279 SSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSFHFDNSLVSLYYKCGKFDE 338

Query: 238 AREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRF 297
           AR IF +MP ++LVSWNA+++GY+ +G +  A  +F +M+ +++++W  MI+G   NG  
Sbjct: 339 ARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFG 398

Query: 298 MEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLL 357
            E L+L   M      P D     A+ + A L     G+  H+ ++K GF      G  L
Sbjct: 399 EEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNAL 458

Query: 358 IQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA 417
           I MY+KCG +E A  VFR +       W A+I  LG HG   +A+D++ +M + G++P  
Sbjct: 459 ITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDR 518

Query: 418 ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIE 477
           IT + VL ACSHAGLV+ GR+YF+ M   Y I P  +HY  L+D+LCR+G   +A+S IE
Sbjct: 519 ITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIE 578

Query: 478 SMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDK 537
           S+P +P   IW +LLSG R HGN ++G  AA+ L  + P+  G Y++LSN++AA GQW++
Sbjct: 579 SLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEE 638

Query: 538 VSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGH 597
           V+ VR++M+ RG +K+   S IE    +H F+V D SHP+ + ++  L ++  +++  G+
Sbjct: 639 VARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGKEMRRLGY 698

Query: 598 VPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTK 657
           VPDT+ VL  +E    KE  L  HSE++A+AFGL+ +   + IRI KNLR C DCH+  +
Sbjct: 699 VPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFFR 758

Query: 658 LLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            LS +  R+II+RD  RFHHF+NG CSC +FW
Sbjct: 759 FLSWVVQRDIILRDRKRFHHFRNGECSCGNFW 790



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 115/533 (21%), Positives = 218/533 (40%), Gaps = 114/533 (21%)

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
           R  +++  + +HG +   GF     +L+ L+ +Y K  E++  R++FD + + D ++   
Sbjct: 26  RRTSLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTT 85

Query: 194 LIDGYVKKGEVEVAMKLFDEMPD--RDLFSWTCLVDGFSKCGKVEIAREIFYRMPN---- 247
           ++ GY   G++ +A  +F++ P   RD   +  ++ GFS       A  +F +M +    
Sbjct: 86  MVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFK 145

Query: 248 --------------------RNLVSW----------------NAMINGYMKAGD----VD 267
                               +  V +                NA+++ Y K       + 
Sbjct: 146 PDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLH 205

Query: 268 SACELFDDMEIRDLITWNSMIAGYELNGRF------------------------------ 297
           SA ++FD++  +D  +W +M+ GY  NG F                              
Sbjct: 206 SARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRG 265

Query: 298 --MEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKN---GFVVDGV 352
              EALE++  M+   +  ++ T  S + A A   +L  G+ +H+Y+++     F  D  
Sbjct: 266 FYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSFHFDNS 325

Query: 353 LGTL---------------------------LIQMYSKCGSIESALTVFRAISKKKVGHW 385
           L +L                           L+  Y   G I  A  +F+ + +K +  W
Sbjct: 326 LVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSW 385

Query: 386 TAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN 445
             MI GL  +G   + L LF+ M R G +P    F G + +C+  G   +G++Y   ++ 
Sbjct: 386 MIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLK 445

Query: 446 DYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLS--GARNHGNKDI 503
             G + ++     L+ +  + G +EEA+    +MP   + V W +L++  G   HG + +
Sbjct: 446 -IGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDS-VSWNALIAALGQHGHGAEAV 503

Query: 504 GEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGS 556
             Y       + PD I    VL+   + AG  D+  +  + M+   +R  PG+
Sbjct: 504 DVYEEMLKKGIRPDRITLLTVLTAC-SHAGLVDQGRKYFDSMETV-YRIPPGA 554



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 100/397 (25%), Positives = 178/397 (44%), Gaps = 53/397 (13%)

Query: 225 LVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEI--RDLI 282
           L+D + K  ++  AR++F  +   + ++   M++GY  +GD+  A  +F+   +  RD +
Sbjct: 55  LIDVYCKSSELNYARQLFDEISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTV 114

Query: 283 TWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKG-RWMHSY 341
            +N+MI G+  N     A+ L   M      P++ T  S L+ +A +A   K     H+ 
Sbjct: 115 MYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLALVADDEKQCVQFHAA 174

Query: 342 IVKNGFVVDGVLGTLLIQMYSKCGS----IESALTVFRAISKKKVGHWTAMIVGL----- 392
            +K+G      +   L+ +YSKC S    + SA  VF  I +K    WT M+ G      
Sbjct: 175 ALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGY 234

Query: 393 ---------GM------------------HGMATQALDLFNKMCRMGMKPTAITFIGVLN 425
                    GM                   G   +AL++  +M   G++    T+  V+ 
Sbjct: 235 FDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIR 294

Query: 426 ACSHAGLVNDGRRYFNMMINDYGIEPTIEHY-GCLVDILCRTGYLEEAKSTIESMPMRPN 484
           AC+ AGL+  G++    ++     E    H+   LV +  + G  +EA++  E MP + +
Sbjct: 295 ACATAGLLQLGKQVHAYVLRR---EDFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAK-D 350

Query: 485 FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREM 544
            V W +LLSG  + G+  IGE A     ++    I  ++++ +  A  G  ++  ++   
Sbjct: 351 LVSWNALLSGYVSSGH--IGE-AKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSC 407

Query: 545 MKKRGFRKDPG----SSSIEHRGVLHEFVVGDKSHPQ 577
           MK+ GF  +P     S +I+   VL  +  G + H Q
Sbjct: 408 MKREGF--EPCDYAFSGAIKSCAVLGAYCNGQQYHAQ 442


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 253/663 (38%), Positives = 389/663 (58%), Gaps = 15/663 (2%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +Q+H   +K   +    + + L+ +Y+     ++     +FD  ++  ++V +  L+  Y
Sbjct: 112 KQVHCQCIKCGFVEDVSVGTSLVDMYMKTE--SVEDGERVFDE-MRVKNVVSWTSLLAGY 168

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
             N  + +AL LF  +    + P+ FT   V+ G A  GA+++G Q+H +V K G     
Sbjct: 169 RQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTI 228

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
           FV +S+V+MY+K   +   + VFD+M++++ VSWN +I G+V  G    A +LF  M   
Sbjct: 229 FVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLE 288

Query: 218 DL-FSWTCLVDGFSKCGKVE---IAREIFYRM----PNRNLVSWNAMINGYMKAGDVDSA 269
            +  + T        C  ++    A+++  ++     + +L    A++  Y K  ++D A
Sbjct: 289 GVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDA 348

Query: 270 CELFDDME-IRDLITWNSMIAGYELNGRFMEALELLETMLIGD-VLPNDATLVSALSAVA 327
            +LF  M  ++++++W ++I+GY  NGR   A+ L   M   + V PN+ T  S L+A A
Sbjct: 349 FKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACA 408

Query: 328 G-LAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWT 386
              A + +G+  HS  +K+GF     + + L+ MY+K G+IESA  VF+    + +  W 
Sbjct: 409 APTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWN 468

Query: 387 AMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIND 446
           +MI G   HG   ++L +F +M    ++   ITFIGV++AC+HAGLVN+G+RYF++M+ D
Sbjct: 469 SMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKD 528

Query: 447 YGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEY 506
           Y I PT+EHY C+VD+  R G LE+A   I  MP      IW +LL+  R H N  +GE 
Sbjct: 529 YHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGEL 588

Query: 507 AANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLH 566
           AA  LI + P     YV+LSNIYA AG W + ++VR++M  +  +K+ G S IE +    
Sbjct: 589 AAEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTF 648

Query: 567 EFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLA 626
            F+ GD SHPQ+D I+ KL E+  +LK AG+ PDT  VL  +E++  KE  L  HSERLA
Sbjct: 649 SFMAGDLSHPQSDRIYLKLEELSIRLKDAGYYPDTKYVLHDVEEE-HKEVILSQHSERLA 707

Query: 627 IAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCK 686
           IAFGLI     +PI+IVKNLRVC DCH+V KL+S I  R+I+VRD++RFHHFK GSCSC 
Sbjct: 708 IAFGLIATPPGTPIQIVKNLRVCGDCHTVIKLISKIEGRDIVVRDSNRFHHFKGGSCSCG 767

Query: 687 DFW 689
           D+W
Sbjct: 768 DYW 770



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 141/438 (32%), Positives = 216/438 (49%), Gaps = 14/438 (3%)

Query: 73  YARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGA 132
           +++ +FD   Q   L   N L+  +  N ++ EAL LF  L       D  +L CV+K  
Sbjct: 44  HSQQLFDETPQQ-GLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVC 102

Query: 133 ARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWN 192
             L     GKQ+H    K GF  D  V +SLV MY K   ++ G RVFD M  K++VSW 
Sbjct: 103 GCLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWT 162

Query: 193 CLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNR 248
            L+ GY + G  E A+KLF +M    +    F++  ++ G +  G VE   ++   +   
Sbjct: 163 SLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKS 222

Query: 249 NLVSW----NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELL 304
            L S     N+M+N Y K+  V  A  +FD ME R+ ++WNSMIAG+  NG  +EA EL 
Sbjct: 223 GLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELF 282

Query: 305 ETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKC 364
             M +  V        + +   A +  ++  + +H  ++KNG   D  + T L+  YSKC
Sbjct: 283 YRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKC 342

Query: 365 GSIESALTVFRAI-SKKKVGHWTAMIVGLGMHGMATQALDLFNKMCR-MGMKPTAITFIG 422
             I+ A  +F  +   + V  WTA+I G   +G   +A++LF +M R  G++P   TF  
Sbjct: 343 SEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSS 402

Query: 423 VLNACSH-AGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPM 481
           VLNAC+     V  G+++ +  I   G    +     LV +  + G +E A    +    
Sbjct: 403 VLNACAAPTASVEQGKQFHSCSIKS-GFSNALCVSSALVTMYAKRGNIESANEVFKRQVD 461

Query: 482 RPNFVIWMSLLSGARNHG 499
           R + V W S++SG   HG
Sbjct: 462 R-DLVSWNSMISGYAQHG 478



 Score = 47.4 bits (111), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 81/185 (43%), Gaps = 33/185 (17%)

Query: 31  SSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLY 90
           +++ ++ +Q H+ S+K+       +SS L+++Y      N+  A  +F R +    LV +
Sbjct: 411 TASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKR--GNIESANEVFKRQVDR-DLVSW 467

Query: 91  NLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFK 150
           N +I  Y  +    ++L +F ++  + L  D  T   VI      G + EG++   L+ K
Sbjct: 468 NSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVK 527

Query: 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
                D  ++ +                         +  ++C++D Y + G +E AM L
Sbjct: 528 -----DYHIVPT-------------------------MEHYSCMVDLYSRAGMLEKAMDL 557

Query: 211 FDEMP 215
            ++MP
Sbjct: 558 INKMP 562


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 251/660 (38%), Positives = 378/660 (57%), Gaps = 36/660 (5%)

Query: 31  SSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLY 90
           S +  E +++H   +K      S +  +L  LY+    N +  AR +FD I  +PS++L+
Sbjct: 21  SKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLS--CNQVVLARRLFDEI-PNPSVILW 77

Query: 91  NLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFK 150
           N +I+ Y +N     A+ L+  +L   + P+ +T P V+K  + L AI++G +IH     
Sbjct: 78  NQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKM 137

Query: 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
            G   D FV ++LV  YAK G +   +R+F +M  +D+V+WN +I G    G  + A++L
Sbjct: 138 FGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQL 197

Query: 211 FDEMPDRDLFSWTCLVDG-FSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSA 269
             +M +  +   +  + G    C  +  AR+IF  M  RN VSW+AMI GY     V S 
Sbjct: 198 IMQMQEEGICPNSSTIVGVLPTCQCLLYARKIFDVMGVRNEVSWSAMIGGY-----VASD 252

Query: 270 CELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGL 329
           C                            EAL++   M +  + P+  T++  L A + L
Sbjct: 253 C--------------------------MKEALDIFRMMQLSGIDPDLTTMLGVLPACSHL 286

Query: 330 AVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMI 389
           A L  G   H Y++  GF  D ++   LI MYSKCG I  A  VF  + +  +  W AMI
Sbjct: 287 AALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMI 346

Query: 390 VGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGI 449
           +G G+HG+  +AL LF+ +  +G+KP  ITFI +L++CSH+GLV +GR +F+ M  D+ I
Sbjct: 347 IGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSI 406

Query: 450 EPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAAN 509
            P +EH  C+VDIL R G ++EA   I +MP  P+  IW +LLS  R H N ++GE  + 
Sbjct: 407 VPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSK 466

Query: 510 NLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFV 569
            +  + P++ G +V+LSNIY+AAG+WD  + +R   K  G +K PG S IE  G++H FV
Sbjct: 467 KIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFV 526

Query: 570 VGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAF 629
            GD+SH Q  +I+ KL E+  ++K  G+  + + V   +E++ EKE  L  HSE+LAIAF
Sbjct: 527 GGDQSHLQLSQINRKLEELLVEMKRLGYQAECSFVFQDVEEE-EKEQILLYHSEKLAIAF 585

Query: 630 GLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           G++N+K+  PI + KNLRVC DCH+  K ++ I  REI VRD +RFHHFKNG+C+C DFW
Sbjct: 586 GILNLKAGRPILVTKNLRVCGDCHTAIKFMTLITKREITVRDANRFHHFKNGTCNCGDFW 645


>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
 gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
          Length = 619

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 239/599 (39%), Positives = 348/599 (58%), Gaps = 47/599 (7%)

Query: 137 AIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLID 196
           ++K  K +H  + +LG   D ++L+ ++     FG  +   R+F    + ++  +N +I 
Sbjct: 22  SLKHLKHVHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNTMIH 81

Query: 197 GYVKKGEVEVAMKLFDEM------PDR--------------------------------- 217
           G V     + +++++  M      PD                                  
Sbjct: 82  GLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVKAGCES 141

Query: 218 DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSA-------C 270
           D F  T LV  + KCG ++ A ++F  +P +N+ +W A+I+GY+  G    A       C
Sbjct: 142 DAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRAC 201

Query: 271 ELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLA 330
            +FD M  +D+++W+SMI GY  NG   EAL+L   ML     P+   +V  L A A L 
Sbjct: 202 SVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARLG 261

Query: 331 VLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIV 390
            L  G W  + + +N F+ + VLGT LI MY+KCG ++SA  VFR + KK +  W A I 
Sbjct: 262 ALELGNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAIS 321

Query: 391 GLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIE 450
           GL M G    A  LF +M + G++P   TF+G+L AC+HAGLV++GR+YFN M   + + 
Sbjct: 322 GLAMSGHVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERVFTLT 381

Query: 451 PTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANN 510
           P IEHYGC+VD+L R G+L+EA   ++SMPM  N ++W +LL G R H +  + E     
Sbjct: 382 PEIEHYGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRLHRDTQLVEGVLKQ 441

Query: 511 LIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVV 570
           LI + P   G YV+LSNIY+A+ +W+  +++R +M +RG +K PG S IE  GV+HEF+V
Sbjct: 442 LIALEPSNSGNYVLLSNIYSASHKWEDAAKIRSIMSERGIKKVPGYSWIEVDGVVHEFLV 501

Query: 571 GDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFG 630
           GD SHP +++I++KL E+   LKA+G+VP T  VL  IE++ EKE  +  HSE+LAIAFG
Sbjct: 502 GDTSHPLSEKIYAKLGELVKDLKASGYVPTTDYVLFDIEEE-EKEHFIGCHSEKLAIAFG 560

Query: 631 LINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           LI+      IR+VKNLRVC DCH   K +S    REIIVRDN+RFH F +GSCSCKD+W
Sbjct: 561 LISTAPNDKIRVVKNLRVCGDCHEAIKHISRFTGREIIVRDNNRFHCFNDGSCSCKDYW 619



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 115/439 (26%), Positives = 197/439 (44%), Gaps = 82/439 (18%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           K  + +HA  ++  L   S + +++L    +    N +Y+  IF +  + P++ L+N +I
Sbjct: 24  KHLKHVHAALLRLGLDEDSYLLNKVLRFSFN--FGNTNYSHRIFHQT-KEPNIFLFNTMI 80

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
              V N    E++ ++  +    L PD+FT P ++K  ARL   K G ++HGLV K G  
Sbjct: 81  HGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVKAGCE 140

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL---- 210
            D FV +SLVS+Y K G ID   +VFD + +K++ +W  +I GY+  G+   A+ +    
Sbjct: 141 SDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRA 200

Query: 211 ---FDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR------------------- 248
              FD M ++D+ SW+ ++ G++  G  + A ++F++M N                    
Sbjct: 201 CSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARL 260

Query: 249 --------------------NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMI 288
                               N V   A+I+ Y K G +DSA E+F  M  +D++ WN+ I
Sbjct: 261 GALELGNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAI 320

Query: 289 AGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFV 348
           +G  ++G    A  L   M    + P+  T V  L A     ++++GR            
Sbjct: 321 SGLAMSGHVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGR------------ 368

Query: 349 VDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKM 408
                     Q ++   S+E   T+       ++ H+  M+  LG  G   +A  L    
Sbjct: 369 ----------QYFN---SMERVFTL-----TPEIEHYGCMVDLLGRAGFLDEAHQLVKS- 409

Query: 409 CRMGMKPTAITFIGVLNAC 427
             M M+  AI +  +L  C
Sbjct: 410 --MPMEANAIVWGALLGGC 426



 Score = 43.5 bits (101), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 44/230 (19%), Positives = 97/230 (42%), Gaps = 6/230 (2%)

Query: 328 GLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTA 387
           G   L   + +H+ +++ G   D  L   +++     G+   +  +F    +  +  +  
Sbjct: 19  GFNSLKHLKHVHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNT 78

Query: 388 MIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDY 447
           MI GL ++    +++++++ M + G+ P + TF  +L AC+       G +   +++   
Sbjct: 79  MIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVK-A 137

Query: 448 GIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGN----KDI 503
           G E        LV +  + G+++ A    + +P + N   W +++SG    G      D+
Sbjct: 138 GCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEK-NVAAWTAIISGYIGVGKCREAIDM 196

Query: 504 GEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKD 553
              A +    +    I  +  +   YA+ G   +  ++   M   GFR D
Sbjct: 197 FRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPD 246


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 261/669 (39%), Positives = 388/669 (57%), Gaps = 16/669 (2%)

Query: 31  SSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLY 90
           SS  K   ++HA  +K+N +    +++ L++++V      + YA  IFD  L     + +
Sbjct: 125 SSFKKLGMEIHAAILKSNQVLDVYVANALVAMHV--RFGKMSYAARIFDE-LDEKDNITW 181

Query: 91  NLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFK 150
           N +I  +  N   +EAL  FC L D  L PD  +L  ++  + RLG +  GK+IH    K
Sbjct: 182 NSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMK 241

Query: 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
                +  + ++L+ MY+K   +     VFD M +KDL+SW  +I  Y +      A+KL
Sbjct: 242 NWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKL 301

Query: 211 FDEMP------DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR---NLVSWNAMINGYM 261
             ++       D  +   T L     +C  +  A+E+      R   +L+  N +I+ Y 
Sbjct: 302 LRKVQTKGMDVDTMMIGSTLLACSGLRC--LSHAKEVHGYTLKRGLSDLMMQNMIIDVYA 359

Query: 262 KAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVS 321
             G+++ A  +F+ ++ +D+++W SMI+ Y  NG   EAL +   M    V P+  TLVS
Sbjct: 360 DCGNINYATRMFESIKCKDVVSWTSMISCYVHNGLANEALGVFYLMKETSVEPDSITLVS 419

Query: 322 ALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKK 381
            LSA A L+ LNKG+ +H +I + GF+++G     L+ MY+ CGS+E+A  VF     K 
Sbjct: 420 ILSAAASLSALNKGKEIHGFIFRKGFMLEGSTVNSLVDMYACCGSLENAYKVFICTRSKS 479

Query: 382 VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFN 441
           +  WT MI   GMHG    A++LF+ M    + P  ITF+ +L ACSH+GL+N+G+R   
Sbjct: 480 LVLWTTMINAYGMHGRGKAAVELFSIMEDQKLIPDHITFLALLYACSHSGLINEGKRLLE 539

Query: 442 MMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNK 501
            M   Y +EP  EHY CLVD+L R  +LEEA   ++SM + P   +W + L   R H NK
Sbjct: 540 TMKCKYQLEPWPEHYACLVDLLGRANHLEEAYHFVKSMQIEPTAEVWCAFLGACRIHSNK 599

Query: 502 DIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEH 561
            +GE AA  L+ + PD+ G YV++SN++AA+G+W  V EVR  MK  G +K+PG S IE 
Sbjct: 600 KLGEIAAQKLLDLDPDSPGSYVLISNVFAASGRWKDVEEVRMRMKGGGLKKNPGCSWIEV 659

Query: 562 RGVLHEFVVGDKSHPQTDEIHSKLSEMRNKL-KAAGHVPDTTQVLLCIEDQKEKEAELEN 620
              +H F+V DKSHP++ +I+ KL+++  KL K  G+VP T  VL  +  ++EK   L  
Sbjct: 660 GNKVHTFLVRDKSHPESYKIYQKLAQITEKLEKEGGYVPQTKLVLHNV-GKEEKVQMLYG 718

Query: 621 HSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKN 680
           HSERLAIA+GL++    +PIRI KNLRVC DCH+  KL+S  + RE+IVRD SRFHHF++
Sbjct: 719 HSERLAIAYGLMSTSEGTPIRITKNLRVCVDCHTFCKLVSKFFERELIVRDASRFHHFED 778

Query: 681 GSCSCKDFW 689
           G CSC DFW
Sbjct: 779 GVCSCGDFW 787



 Score =  185 bits (469), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 132/442 (29%), Positives = 221/442 (50%), Gaps = 17/442 (3%)

Query: 121 DNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVF 180
           D+FT PCV+K    +  I  G +IHGL+ K G+    FV +SLVSMYAK  +I   R++F
Sbjct: 9   DSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCNDILGARKLF 68

Query: 181 DAMDDK-DLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWT---------CLVDGFS 230
           D M+++ D+VSWN +I  Y   G+   A+ LF EM    + + T         C    F 
Sbjct: 69  DRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQACEDSSFK 128

Query: 231 KCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAG 290
           K G +EI   I       ++   NA++  +++ G +  A  +FD+++ +D ITWNSMIAG
Sbjct: 129 KLG-MEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAG 187

Query: 291 YELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVD 350
           +  NG + EAL+    +   ++ P++ +L+S L+A   L  L  G+ +H+Y +KN    +
Sbjct: 188 FTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNWLDSN 247

Query: 351 GVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCR 410
             +G  LI MYSKC  +  A  VF  +  K +  WT +I     +   T+AL L  K+  
Sbjct: 248 LRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLRKVQT 307

Query: 411 MGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLE 470
            GM    +     L ACS    ++  +      +     +  +++   ++D+    G + 
Sbjct: 308 KGMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKRGLSDLMMQNM--IIDVYADCGNIN 365

Query: 471 EAKSTIESMPMRPNFVIWMSLLSGARNHG--NKDIGEYAANNLIKVAPDTIGCYVVLSNI 528
            A    ES+  + + V W S++S   ++G  N+ +G +       V PD+I   V + + 
Sbjct: 366 YATRMFESIKCK-DVVSWTSMISCYVHNGLANEALGVFYLMKETSVEPDSIT-LVSILSA 423

Query: 529 YAAAGQWDKVSEVREMMKKRGF 550
            A+    +K  E+   + ++GF
Sbjct: 424 AASLSALNKGKEIHGFIFRKGF 445



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 132/469 (28%), Positives = 233/469 (49%), Gaps = 13/469 (2%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYV 98
           ++H L +K        +++ L+S+Y     N++  AR +FDR+ +   +V +N +I  Y 
Sbjct: 31  EIHGLIIKCGYDSIVFVANSLVSMYAK--CNDILGARKLFDRMNERNDVVSWNSIISAYS 88

Query: 99  FNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKF 158
            N +  EAL LF ++    +  + +TL   ++        K G +IH  + K     D +
Sbjct: 89  LNGQCMEALGLFREMQKAGVGANTYTLVAALQACEDSSFKKLGMEIHAAILKSNQVLDVY 148

Query: 159 VLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRD 218
           V ++LV+M+ +FG++    R+FD +D+KD ++WN +I G+ + G    A++ F  + D +
Sbjct: 149 VANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAGFTQNGLYNEALQFFCGLQDAN 208

Query: 219 L----FSWTCLVDGFSKCGKVEIAREIF-YRMPN---RNLVSWNAMINGYMKAGDVDSAC 270
           L     S   ++    + G +   +EI  Y M N    NL   N +I+ Y K   V  A 
Sbjct: 209 LKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAG 268

Query: 271 ELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLA 330
            +FD M  +DLI+W ++IA Y  N    EAL+LL  +    +  +   + S L A +GL 
Sbjct: 269 LVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLR 328

Query: 331 VLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIV 390
            L+  + +H Y +K G + D ++  ++I +Y+ CG+I  A  +F +I  K V  WT+MI 
Sbjct: 329 CLSHAKEVHGYTLKRG-LSDLMMQNMIIDVYADCGNINYATRMFESIKCKDVVSWTSMIS 387

Query: 391 GLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIE 450
               +G+A +AL +F  M    ++P +IT + +L+A +    +N G+     +    G  
Sbjct: 388 CYVHNGLANEALGVFYLMKETSVEPDSITLVSILSAAASLSALNKGKEIHGFIFRK-GFM 446

Query: 451 PTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
                   LVD+    G LE A         + + V+W ++++    HG
Sbjct: 447 LEGSTVNSLVDMYACCGSLENAYKVFICTRSK-SLVLWTTMINAYGMHG 494


>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
          Length = 748

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 259/679 (38%), Positives = 377/679 (55%), Gaps = 69/679 (10%)

Query: 9   SSPIHALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHI 68
           S P + L Q+ PS     +L    + +  +Q+H+  +KT L       S+L+        
Sbjct: 23  SDPPYKLLQNHPS---LTLLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPF 79

Query: 69  NNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCV 128
            NL YA  +F+ I Q P+  ++N +I+    +     A+  +  +L   + P+++T P +
Sbjct: 80  GNLSYALLLFESIEQ-PNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFL 138

Query: 129 IKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDL 188
           +K  A++GA +EGKQIHG V KLG   D FV +SL++MYA+ GE+     VF     +D 
Sbjct: 139 LKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDA 198

Query: 189 VSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR 248
           VS+  LI GY  +G ++ A +LF+E+P RD  SW  ++ G+++ G+ E A   F  M   
Sbjct: 199 VSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRA 258

Query: 249 NLV--------------------------SW-------------NAMINGYMKAGDVDSA 269
           N+                           SW             NA+I+ Y K GD+D A
Sbjct: 259 NVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKA 318

Query: 270 CELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGL 329
            +LF+ +  +D+I+WN MI GY     + EAL L   M   +V PND T VS L A A L
Sbjct: 319 RDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYL 378

Query: 330 AVLNKGRWMHSYIVKNGF-VVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAM 388
             L+ G+W+H+YI K    + +  L T LI MY+KCG+IE+A  VF  +  K +G W AM
Sbjct: 379 GALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAM 438

Query: 389 IVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYG 448
           I GL MHG A  AL+LF +M   G +P  ITF+GVL+ACSHAGLV  GR+ F+ M+ DY 
Sbjct: 439 ISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYD 498

Query: 449 IEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAA 508
           I P ++HYGC++D+L R G  +EA++ +++M M+P+  IW SLL   R HGN ++GE+AA
Sbjct: 499 ISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAA 558

Query: 509 NNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEF 568
            +L ++ P+  G YV+LSNIYA AG+WD V+ +R  +  +G +K                
Sbjct: 559 KHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKKX--------------- 603

Query: 569 VVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIA 628
                 +   DEI     E        G VPDT++VL  + D++ KE  L +HSE+LAIA
Sbjct: 604 ---QDIYKMLDEIDQSFGE------RPGXVPDTSEVLYDM-DEEWKEGSLSHHSEKLAIA 653

Query: 629 FGLINVKSRSPIRIVKNLR 647
           FGLI+ K  + IRIVKNLR
Sbjct: 654 FGLISTKPETTIRIVKNLR 672


>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 231/593 (38%), Positives = 345/593 (58%), Gaps = 42/593 (7%)

Query: 138 IKEGKQIHGLVFKLGFGFDKFVLSSLVSMYA--KFGEIDLGRRVFDAMDDKDLVSWNCLI 195
           + E KQ H  + +LG   D   +  ++   A  K G+++    VFD +   D   +N + 
Sbjct: 33  MAELKQYHSQIIRLGLSADNDAMGRVIKFCAISKSGDLNYALEVFDKIPHPDAYIYNTIF 92

Query: 196 DGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLV------------------------- 226
            GY++       + ++  M  + +    F++  L+                         
Sbjct: 93  RGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFG 152

Query: 227 -DGFS---------KCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDM 276
            DGFS             +E AR +F  MP R++VSW ++I GY + G VD A E+F+ M
Sbjct: 153 ADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDVVSWTSLITGYSQWGFVDKAREVFELM 212

Query: 277 EIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGR 336
             R+ ++WN+MIA Y  + R  EA  L + M + +V+ +     S LSA  GL  L +G+
Sbjct: 213 PERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQGK 272

Query: 337 WMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHG 396
           W+H YI K+G  +D  L T +I MY KCG +E A  VF  + +K +  W  MI GL MHG
Sbjct: 273 WIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHG 332

Query: 397 MATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHY 456
               A++LF +M R  + P  ITF+ VL+AC+H+GLV +G+ YF  M    G++P +EH+
Sbjct: 333 KGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHF 392

Query: 457 GCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAP 516
           GC+VD+L R G LEEA+  I  MP+ P+  +  +L+   R HGN ++GE     +I++ P
Sbjct: 393 GCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGEQIGKKVIELEP 452

Query: 517 DTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHP 576
              G YV+L+N+YA+AG+W+ V++VR++M  RG +K PG S IE    + EF+ G ++HP
Sbjct: 453 HNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESESGVDEFIAGGRAHP 512

Query: 577 QTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKS 636
           Q  EI++KL E+   +++ G+VPDT  VL  I D++EKE  L  HSE+LAIAFGL+  K 
Sbjct: 513 QAKEIYAKLDEILETIRSIGYVPDTDGVLHDI-DEEEKENPLYYHSEKLAIAFGLLKTKP 571

Query: 637 RSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
              +RI KNLR+C DCH  +KL+S +Y+REII+RD +RFHHF+ G CSCKD+W
Sbjct: 572 GETLRISKNLRICRDCHQASKLISKVYDREIIIRDRNRFHHFRMGGCSCKDYW 624


>gi|326488203|dbj|BAJ89940.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 236/571 (41%), Positives = 351/571 (61%), Gaps = 10/571 (1%)

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD 187
           +++     G+++ G+Q+HG +   G G D  + + LV +YA  G++   RR+FD M  ++
Sbjct: 68  ILQSCVASGSLRAGRQLHGRLLVSGLGPDTVLSTKLVDLYAACGQVGHARRLFDGMPKRN 127

Query: 188 LVSWNCLIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREIFY 243
           +  WN LI  Y ++G  E A++L+  M +     D F++  ++   +    +E  RE+  
Sbjct: 128 VFLWNVLIRAYAREGPREAAVRLYRGMVEHGVEPDNFTYPLVLKACAALLDLETGREVHQ 187

Query: 244 RMPN----RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFME 299
           R+      +++     +++ Y K G VD A  +FD + +RD + WNSMIA Y  NGR ME
Sbjct: 188 RVSGTRWGQDVFVCAGVVDMYAKCGCVDDARAVFDGIAVRDAVVWNSMIAAYGQNGRPME 247

Query: 300 ALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQ 359
           AL L   M    + P  ATLVSA+SA A  A L +GR +H +  + GF +   L T L+ 
Sbjct: 248 ALALCRDMAANGIGPTIATLVSAVSAAADAAALPRGRELHGFGWRRGFGLQDKLKTSLVD 307

Query: 360 MYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKM-CRMGMKPTAI 418
           MY+K G ++ A  +F  + K+++  W AMI G GMHG A +AL LFNKM     + P  I
Sbjct: 308 MYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHADEALALFNKMKGDAQVTPDNI 367

Query: 419 TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIES 478
           TF+GVL+AC+H G+V + + +F +M+N Y I+PT++HY C++D+L  TG  EEA   I+ 
Sbjct: 368 TFVGVLSACNHGGMVEEAKEFFYLMVNAYSIKPTVQHYTCVIDVLGHTGRFEEAYDLIKG 427

Query: 479 MPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKV 538
           M + P+  IW +LL+G + H N ++GE A   LI++ P+  G YV LSNIYA +G+W+K 
Sbjct: 428 MSIEPDSGIWGALLNGCKIHKNVELGELALQKLIELEPEDAGNYVHLSNIYAQSGKWEKA 487

Query: 539 SEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHV 598
           + VR++M  RG +K    S IE +G  H F+VGD SHP++DEI+ +L  +   +  AG+V
Sbjct: 488 ARVRKLMTNRGLKKILACSWIELKGKTHGFLVGDASHPRSDEIYGELERLEGLMSDAGYV 547

Query: 599 PDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKL 658
           PD   V   ++D  EK   + +HSERLAIAFGLI+    + + + KNLRVC DCH V KL
Sbjct: 548 PDIIPVFHNVDDD-EKRNMVRSHSERLAIAFGLISTPPGTKLLVTKNLRVCEDCHVVIKL 606

Query: 659 LSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           +S I  REII+RD +R+HHF NG CSCKD+W
Sbjct: 607 ISQIVQREIIIRDVNRYHHFVNGECSCKDYW 637



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 121/454 (26%), Positives = 200/454 (44%), Gaps = 56/454 (12%)

Query: 31  SSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLY 90
           S + +  +QLH   + + L   + +S++L+ LY       + +AR +FD + +  ++ L+
Sbjct: 75  SGSLRAGRQLHGRLLVSGLGPDTVLSTKLVDLYAA--CGQVGHARRLFDGMPKR-NVFLW 131

Query: 91  NLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFK 150
           N+LI+ Y        A+ L+  +++  + PDNFT P V+K  A L  ++ G+++H  V  
Sbjct: 132 NVLIRAYAREGPREAAVRLYRGMVEHGVEPDNFTYPLVLKACAALLDLETGREVHQRVSG 191

Query: 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
             +G D FV + +V MYAK G +D  R VFD +  +D V WN +I  Y + G    A+ L
Sbjct: 192 TRWGQDVFVCAGVVDMYAKCGCVDDARAVFDGIAVRDAVVWNSMIAAYGQNGRPMEALAL 251

Query: 211 FDEMP--------------------------DRDL--FSW-----------TCLVDGFSK 231
             +M                            R+L  F W           T LVD ++K
Sbjct: 252 CRDMAANGIGPTIATLVSAVSAAADAAALPRGRELHGFGWRRGFGLQDKLKTSLVDMYAK 311

Query: 232 CGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDME-----IRDLITWNS 286
            G V++AR +F ++  R LVSWNAMI GY   G  D A  LF+ M+       D IT+  
Sbjct: 312 SGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHADEALALFNKMKGDAQVTPDNITFVG 371

Query: 287 MIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNG 346
           +++     G   EA E    M+    +       + +  V G    + GR+  +Y +  G
Sbjct: 372 VLSACNHGGMVEEAKEFFYLMVNAYSIKPTVQHYTCVIDVLG----HTGRFEEAYDLIKG 427

Query: 347 FVVD---GVLGTLL--IQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQA 401
             ++   G+ G LL   +++      E AL     +  +  G++  +       G   +A
Sbjct: 428 MSIEPDSGIWGALLNGCKIHKNVELGELALQKLIELEPEDAGNYVHLSNIYAQSGKWEKA 487

Query: 402 LDLFNKMCRMGMKPTAITFIGVLNACSHAGLVND 435
             +   M   G+K         L   +H  LV D
Sbjct: 488 ARVRKLMTNRGLKKILACSWIELKGKTHGFLVGD 521



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 83/180 (46%), Gaps = 2/180 (1%)

Query: 320 VSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK 379
            S L +      L  GR +H  ++ +G   D VL T L+ +Y+ CG +  A  +F  + K
Sbjct: 66  TSILQSCVASGSLRAGRQLHGRLLVSGLGPDTVLSTKLVDLYAACGQVGHARRLFDGMPK 125

Query: 380 KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRY 439
           + V  W  +I      G    A+ L+  M   G++P   T+  VL AC+    +  GR  
Sbjct: 126 RNVFLWNVLIRAYAREGPREAAVRLYRGMVEHGVEPDNFTYPLVLKACAALLDLETGREV 185

Query: 440 FNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
              +      +      G +VD+  + G +++A++  + + +R + V+W S+++    +G
Sbjct: 186 HQRVSGTRWGQDVFVCAG-VVDMYAKCGCVDDARAVFDGIAVR-DAVVWNSMIAAYGQNG 243


>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 659

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 251/650 (38%), Positives = 374/650 (57%), Gaps = 21/650 (3%)

Query: 57  SRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDR 116
           SRLL         NL    ++F+R +    +  +N +I     +  S EAL  F  +   
Sbjct: 14  SRLLHTERHTERQNL---TTLFNRYVDKTDVFSWNSVIADLARSGDSAEALRAFSSMRKL 70

Query: 117 FLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLG 176
            L P   + PC IK  + L  I  GKQ H   F  G+  D FV S+L+ MY+  G+++  
Sbjct: 71  SLYPTRSSFPCAIKACSSLLDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDA 130

Query: 177 RRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDRDLF-SWTCLVDGF 229
           R+VFD +  +++VSW  +I GY   G    A+ LF ++       D  +F     +V   
Sbjct: 131 RKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVI 190

Query: 230 SKCGKV-------EIAREIFYRMPNRNLVSWNAMINGYMKAGD--VDSACELFDDMEIRD 280
           S C +V        I   +  R  +R +   N +++ Y K G+  V  A ++FD +  +D
Sbjct: 191 SACSRVAAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKD 250

Query: 281 LITWNSMIAGYELNGRFMEALELLETMLIGDVLP-NDATLVSALSAVAGLAVLNKGRWMH 339
            +++NS+++ Y  +G   EA ++   ++   V+  N  TL + L AV+    L  G+ +H
Sbjct: 251 RVSYNSIMSVYAQSGMSNEAFDVFRRLIKEKVVTFNCITLSTVLLAVSHSGALRIGKCIH 310

Query: 340 SYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMAT 399
             +++ G   D ++GT +I MY KCG +E+A   F  +  K V  WTAMI G GMHG A 
Sbjct: 311 DQVIRMGLEDDVIVGTSIIDMYCKCGRVETARLAFDRMKNKNVRSWTAMIAGYGMHGHAA 370

Query: 400 QALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCL 459
           +AL+LF  M   G++P  ITF+ VL ACSHAGL + G  +FN M   +G+EP +EHYGC+
Sbjct: 371 KALELFPAMIDSGVRPNYITFVSVLAACSHAGLHDVGWHWFNAMKGRFGVEPGLEHYGCM 430

Query: 460 VDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTI 519
           VD+L R G+L++A   I+ M M P+ +IW SLL+  R H N ++ E +   L ++ P   
Sbjct: 431 VDLLGRAGFLQKAYDLIQKMKMEPDSIIWSSLLAACRIHKNVELAEISVARLFELDPSNC 490

Query: 520 GCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTD 579
           G Y++LS+IYA +G+W  V  VR  MK RG  K PG S +E  G +H F++GD+ HPQ +
Sbjct: 491 GYYMLLSHIYADSGRWKDVERVRMTMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQRE 550

Query: 580 EIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSP 639
           +I+  L+E+  KL  AG+V +T+ V   + D++EKE  L  HSE+LAIAFG++N    S 
Sbjct: 551 KIYEFLAELNRKLLEAGYVSNTSSVCHDV-DEEEKEMTLRVHSEKLAIAFGIMNTVPGST 609

Query: 640 IRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           + +VKNLRVC+DCH+V KL+S I +RE +VRD  RFHHFK+G CSC D+W
Sbjct: 610 VNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGFCSCGDYW 659



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 145/314 (46%), Gaps = 22/314 (7%)

Query: 37  TQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKC 96
           T+ +H+  +K        + + LL  Y       +  AR IFD+I+     V YN ++  
Sbjct: 202 TESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDR-VSYNSIMSV 260

Query: 97  YVFNQRSHEALTLFCDLLDRFLLPDN-FTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF 155
           Y  +  S+EA  +F  L+   ++  N  TL  V+   +  GA++ GK IH  V ++G   
Sbjct: 261 YAQSGMSNEAFDVFRRLIKEKVVTFNCITLSTVLLAVSHSGALRIGKCIHDQVIRMGLED 320

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP 215
           D  V +S++ MY K G ++  R  FD M +K++ SW  +I GY   G    A++LF  M 
Sbjct: 321 DVIVGTSIIDMYCKCGRVETARLAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMI 380

Query: 216 DR----DLFSWTCLVDGFSKCGKVEIAREIFYRMPNR-----NLVSWNAMINGYMKAGDV 266
           D     +  ++  ++   S  G  ++    F  M  R      L  +  M++   +AG +
Sbjct: 381 DSGVRPNYITFVSVLAACSHAGLHDVGWHWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFL 440

Query: 267 DSACELFDDMEIR-DLITWNSMIAGYELNGRFMEALELLETML--IGDVLPNDATLVSAL 323
             A +L   M++  D I W+S++A      R  + +EL E  +  + ++ P++      L
Sbjct: 441 QKAYDLIQKMKMEPDSIIWSSLLAAC----RIHKNVELAEISVARLFELDPSNCGYYMLL 496

Query: 324 SAVAGLAVLNKGRW 337
           S +      + GRW
Sbjct: 497 SHIYA----DSGRW 506


>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
          Length = 671

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 224/473 (47%), Positives = 317/473 (67%), Gaps = 2/473 (0%)

Query: 218 DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDME 277
           D +  + L+  ++    +  A+++F     R++VSWNAMI+GY+K  ++  A  +FD M 
Sbjct: 200 DSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFDRMV 259

Query: 278 IRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRW 337
            RD+I+WN+MI GY + G+  EAL L + M    V P +AT+VS LSA A L  L+KG  
Sbjct: 260 CRDVISWNTMINGYAICGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLH 319

Query: 338 MHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGM 397
           +H+YI  N   V+ ++GT L+ MY+KCG I  A  VF A+  K V  W  +I G+ +HG 
Sbjct: 320 LHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGN 379

Query: 398 ATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYG 457
             +A  LF +M   G++P  ITF+ +L+ACSHAG+V++G++  + M + YGIEP +EHYG
Sbjct: 380 VKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYG 439

Query: 458 CLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPD 517
           C++D+L R G+LEEA   I +MPM PN     +LL G R HGN ++GE     LI + P 
Sbjct: 440 CVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPC 499

Query: 518 TIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQ 577
             G Y++LSNIYAAA +WD   +VR +MK  G  K PG S IE +G++H FV GD SHP+
Sbjct: 500 HSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPE 559

Query: 578 TDEIHSKLSEMRNKLKAA-GHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKS 636
           +++I+ KL+E+  +LK+A G+  DT  VLL +E++ +KE  L  HSE+LAIA+GL+++ S
Sbjct: 560 SNKIYEKLNEIHTRLKSAIGYSADTGNVLLDMEEE-DKEHALAVHSEKLAIAYGLLHLDS 618

Query: 637 RSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           +  IRIVKNLRVC DCH V KL+S +Y REIIVRD +RFHHF++G CSC DFW
Sbjct: 619 KEAIRIVKNLRVCRDCHHVIKLISKVYGREIIVRDRNRFHHFEDGECSCLDFW 671



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 123/419 (29%), Positives = 189/419 (45%), Gaps = 73/419 (17%)

Query: 66  PHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTL 125
           P    L YA++IF   LQ+P   LYN LI+    ++   EAL L+  +L   L PD+ T 
Sbjct: 111 PFPTFLAYAKTIFHH-LQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTY 169

Query: 126 PCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD 185
           P VIK          G  +H  V K GF  D +++SSL+ +YA   ++   +++F+    
Sbjct: 170 PFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSA 229

Query: 186 KDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM 245
           +D+VSWN +IDGYVK  E+  A  +FD M  RD+ SW  +++G++ CGK   A  +F +M
Sbjct: 230 RDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQM 289

Query: 246 ------------------------------------PNR---NLVSWNAMINGYMKAGDV 266
                                                NR   N +   A+++ Y K G +
Sbjct: 290 RAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKI 349

Query: 267 DSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326
             A ++F+ ME +D++ WN++IAG  ++G   EA +L + M    V PND T V+ LSA 
Sbjct: 350 SLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSAC 409

Query: 327 AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWT 386
           +   ++++G+                   LL  M S  G IE            KV H+ 
Sbjct: 410 SHAGMVDEGQ------------------KLLDCMSSSYG-IEP-----------KVEHYG 439

Query: 387 AMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN 445
            +I  L   G   +A++L      M M+P       +L  C   G    G      +IN
Sbjct: 440 CVIDLLARAGFLEEAMELIGT---MPMEPNPSALGALLGGCRIHGNFELGEMVGKRLIN 495


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 238/617 (38%), Positives = 359/617 (58%), Gaps = 7/617 (1%)

Query: 80  RILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIK 139
           R +     + +N ++ CYV N    EA+    ++L     PD+  +  +      LG + 
Sbjct: 324 REIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLL 383

Query: 140 EGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYV 199
            GK++H    K     D  V ++L+ MY K   I+    VFD M  KD +SW  +I  Y 
Sbjct: 384 NGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITCYA 443

Query: 200 KKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREIF-YRMPNR--NLVS 252
           +      A+++F E        D      +++  S    + +A+++  Y + N   +LV 
Sbjct: 444 QSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGLETILLAKQLHCYAIRNGLLDLVV 503

Query: 253 WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDV 312
            N +I+ Y + G+V  + ++F+ +E +D++TW SMI  Y  +G   EAL L   M   DV
Sbjct: 504 KNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGLLNEALVLFAEMQSTDV 563

Query: 313 LPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALT 372
            P+   LVS L A+ GL+ L KG+ +H ++++  F ++  + + L+ MYS CGS+  AL 
Sbjct: 564 QPDSVALVSILGAIGGLSSLAKGKEVHGFLIRRNFHMEEAIVSSLVDMYSGCGSLSGALK 623

Query: 373 VFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGL 432
           VF A+  K +  WTAMI   GMHG   QA+DLF +M + G+ P  ++F+ +L ACSH+ L
Sbjct: 624 VFNAVKCKDMVLWTAMINATGMHGHGKQAIDLFKRMLQTGVTPDHVSFLALLYACSHSKL 683

Query: 433 VNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLL 492
           VN+G+ Y +MM++ Y +EP  EHY C+VD+L R+G  EEA   I+SMP++P  V+W SLL
Sbjct: 684 VNEGKCYLDMMMSTYRLEPWQEHYACVVDLLGRSGQTEEAYEFIKSMPLKPKSVVWCSLL 743

Query: 493 SGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRK 552
              R H N ++   AAN L+++ PD  G YV++SN++A  G+W+   EVR  + +RG RK
Sbjct: 744 GACRVHKNHELAVVAANRLLELEPDNPGNYVLVSNVFAEMGKWNNAKEVRARISERGLRK 803

Query: 553 DPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQK 612
           DP  S IE    +H F   D SH   + I+ KL+E+  +L+  G   + T+ +L    ++
Sbjct: 804 DPACSWIEIGNNVHTFTTRDNSHRDAERINLKLAEITERLRKEGGYTEDTRSVLHDVSEE 863

Query: 613 EKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDN 672
           EK   L  HSERLAI+FGLIN +   P+RI KNLRVC DCH  TKL+S +++R+I+VRD 
Sbjct: 864 EKVDVLHRHSERLAISFGLINTRPGMPLRIAKNLRVCGDCHEFTKLVSKLFDRDIVVRDA 923

Query: 673 SRFHHFKNGSCSCKDFW 689
           +RFHHF  GSCSC DFW
Sbjct: 924 NRFHHFSGGSCSCGDFW 940



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 147/532 (27%), Positives = 255/532 (47%), Gaps = 32/532 (6%)

Query: 39  QLHALSVKTNLIYHSG--ISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKC 96
           Q+HA +V T  +      ++++LL +Y       +  AR +FD  +   ++  +N LI  
Sbjct: 79  QVHAHAVATGSLEGDDGFLATKLLFMY--GKCGRVADARLLFDG-MSSRTVFSWNALIGA 135

Query: 97  YVFNQRSHEALTLFCDL---LDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGF 153
           Y+ +  + EAL ++  +       + PD  TL  V+K +   G  + G ++HGL  K G 
Sbjct: 136 YLSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKASGVEGDGRCGCEVHGLAVKHGL 195

Query: 154 GFDKFVLSSLVSMYAKFGEIDLGRRVFDAM-DDKDLVSWNCLIDGYVKKGEVEVAMKLFD 212
               FV ++L++MYAK G +D   RVF+ M D +D+ SWN +I G ++ G    A+ LF 
Sbjct: 196 DRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQNGMFLQALDLFR 255

Query: 213 EMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNL------------VSWNAMINGY 260
            M  R + S    ++ ++  G +++  E+      R L            +  NA++  Y
Sbjct: 256 GM-QRAVLS----MNSYTTVGVLQVCTELAQLNLGRELHAALLKSGSEVNIQCNALLVMY 310

Query: 261 MKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLV 320
            K G VDSA  +F +++ +D I+WNSM++ Y  NG + EA+E +  ML G   P+ A +V
Sbjct: 311 TKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIV 370

Query: 321 SALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKK 380
           S  SAV  L  L  G+ +H+Y +K     D  +G  L+ MY KC  IE +  VF  +  K
Sbjct: 371 SLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIK 430

Query: 381 KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYF 440
               WT +I          +AL++F +  + G+K   +    +L ACS    +   ++  
Sbjct: 431 DHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGLETILLAKQLH 490

Query: 441 NMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG- 499
              I +  ++  +++   ++DI    G +  +    E++  + + V W S+++   N G 
Sbjct: 491 CYAIRNGLLDLVVKNR--IIDIYGECGEVYHSLKMFETVEQK-DIVTWTSMINCYANSGL 547

Query: 500 -NKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGF 550
            N+ +  +A      V PD++    +L  I        K  EV   + +R F
Sbjct: 548 LNEALVLFAEMQSTDVQPDSVALVSILGAI-GGLSSLAKGKEVHGFLIRRNF 598


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 239/662 (36%), Positives = 396/662 (59%), Gaps = 15/662 (2%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +QLH   +K+     + + + L++ Y+      +  AR +FD + +   ++ +N +I  Y
Sbjct: 215 EQLHGFILKSGFGERNSVGNSLVAFYLKNQ--RVDSARKVFDEMTER-DVISWNSIINGY 271

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
           V N  + + L++F  +L   +  D  T+  V  G A    I  G+ +H +  K  F  + 
Sbjct: 272 VSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRED 331

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
              ++L+ MY+K G++D  + VF  M D+ +VS+  +I GY ++G    A+KLF+EM + 
Sbjct: 332 RFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEE 391

Query: 218 ----DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNL-----VSWNAMINGYMKAGDVDS 268
               D+++ T +++  ++   ++  + +   +   +L     VS NA+++ Y K G +  
Sbjct: 392 GISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVS-NALMDMYAKCGSMQE 450

Query: 269 ACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL-PNDATLVSALSAVA 327
           A  +F +M ++D+I+WN++I GY  N    EAL L   +L      P++ T+   L A A
Sbjct: 451 AELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACA 510

Query: 328 GLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTA 387
            L+  +KGR +H YI++NG+  D  +   L+ MY+KCG++  A  +F  I+ K +  WT 
Sbjct: 511 SLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTV 570

Query: 388 MIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDY 447
           MI G GMHG   +A+ LFN+M + G++   I+F+ +L ACSH+GLV++G R+FN+M ++ 
Sbjct: 571 MIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHEC 630

Query: 448 GIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYA 507
            IEPT+EHY C+VD+L RTG L +A   IE+MP+ P+  IW +LL G R H +  + E  
Sbjct: 631 KIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKV 690

Query: 508 ANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHE 567
           A  + ++ P+  G YV+++NIYA A +W++V  +R+ + +RG RK+PG S IE +G ++ 
Sbjct: 691 AEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNI 750

Query: 568 FVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAI 627
           FV GD S+P+T+ I + L ++R ++   G+ P T   L+  E+  EKE  L  HSE+LA+
Sbjct: 751 FVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEM-EKEEALCGHSEKLAM 809

Query: 628 AFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKD 687
           A G+I+      IR+ KNLRVC DCH + K +S +  REI++RD++RFH FK+G CSC+ 
Sbjct: 810 ALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRG 869

Query: 688 FW 689
           FW
Sbjct: 870 FW 871



 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 133/479 (27%), Positives = 235/479 (49%), Gaps = 16/479 (3%)

Query: 31  SSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLY 90
           S + K+ +++         +  S + S+L  +Y +    +L  A  +FD +    +L  +
Sbjct: 107 SKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTN--CGDLKEASRVFDEVKIEKAL-FW 163

Query: 91  NLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFK 150
           N+L+     +     ++ LF  ++   +  D++T  CV K  + L ++  G+Q+HG + K
Sbjct: 164 NILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILK 223

Query: 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
            GFG    V +SLV+ Y K   +D  R+VFD M ++D++SWN +I+GYV  G  E  + +
Sbjct: 224 SGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSV 283

Query: 211 FDEM----PDRDLFSWTCLVDGFSKCGKVEIAREI----FYRMPNRNLVSWNAMINGYMK 262
           F +M     + DL +   +  G +    + + R +         +R     N +++ Y K
Sbjct: 284 FVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSK 343

Query: 263 AGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSA 322
            GD+DSA  +F +M  R ++++ SMIAGY   G   EA++L E M    + P+  T+ + 
Sbjct: 344 CGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAV 403

Query: 323 LSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKV 382
           L+  A   +L++G+ +H +I +N    D  +   L+ MY+KCGS++ A  VF  +  K +
Sbjct: 404 LNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDI 463

Query: 383 GHWTAMIVGLGMHGMATQALDLFNKMCRMG-MKPTAITFIGVLNACSHAGLVNDGRRYFN 441
             W  +I G   +  A +AL LFN +       P   T   VL AC+     + GR    
Sbjct: 464 ISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHG 523

Query: 442 -MMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
            +M N Y  +  + +   LVD+  + G L  A    + +  + + V W  +++G   HG
Sbjct: 524 YIMRNGYFSDRHVAN--SLVDMYAKCGALLLAHMLFDDIASK-DLVSWTVMIAGYGMHG 579



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 131/451 (29%), Positives = 232/451 (51%), Gaps = 28/451 (6%)

Query: 121 DNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVF 180
           D  TL  V++  A   ++K+GK++   +   GF  D  + S L  MY   G++    RVF
Sbjct: 93  DPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVF 152

Query: 181 DAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM----PDRDLFSWTCLVDGFSKCGKVE 236
           D +  +  + WN L++   K G+   ++ LF +M     + D ++++C+   FS    V 
Sbjct: 153 DEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVH 212

Query: 237 IAREIF-----YRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGY 291
              ++           RN V  N+++  Y+K   VDSA ++FD+M  RD+I+WNS+I GY
Sbjct: 213 GGEQLHGFILKSGFGERNSVG-NSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGY 271

Query: 292 ELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDG 351
             NG   + L +   ML+  +  + AT+VS  +  A   +++ GR +HS  VK  F  + 
Sbjct: 272 VSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRED 331

Query: 352 VLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRM 411
                L+ MYSKCG ++SA  VFR +S + V  +T+MI G    G+A +A+ LF +M   
Sbjct: 332 RFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEE 391

Query: 412 GMKPTAITFIGVLNACSHAGLVNDGRRYFNMMI-NDYGIEPTIEHYGCLVDILCRTGYLE 470
           G+ P   T   VLN C+   L+++G+R    +  ND G +  + +   L+D+  + G ++
Sbjct: 392 GISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSN--ALMDMYAKCGSMQ 449

Query: 471 EAKSTIESMPMRPNFVIWMSLLSG-ARN-HGNKDIGEYAANNLI----KVAPD--TIGCY 522
           EA+     M ++ + + W +++ G ++N + N+ +  +   NL+    + +PD  T+ C 
Sbjct: 450 EAELVFSEMRVK-DIISWNTIIGGYSKNCYANEALSLF---NLLLEEKRFSPDERTVACV 505

Query: 523 VVLSNIYAAAGQWDKVSEVREMMKKRGFRKD 553
           +      A+   +DK  E+   + + G+  D
Sbjct: 506 LPAC---ASLSAFDKGREIHGYIMRNGYFSD 533



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 106/227 (46%), Gaps = 6/227 (2%)

Query: 279 RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWM 338
           R +   N+ +  +  +G    A++LL      D+ P   TL S L   A    L  G+ +
Sbjct: 59  RSVTDANTQLRRFCESGNLENAVKLLCVSGKWDIDPR--TLCSVLQLCADSKSLKDGKEV 116

Query: 339 HSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMA 398
            ++I  NGFV+D  LG+ L  MY+ CG ++ A  VF  +  +K   W  ++  L   G  
Sbjct: 117 DNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDF 176

Query: 399 TQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIND-YGIEPTIEHYG 457
           + ++ LF KM   G++  + TF  V  + S    V+ G +    ++   +G   ++ +  
Sbjct: 177 SGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGN-- 234

Query: 458 CLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIG 504
            LV    +   ++ A+   + M  R + + W S+++G  ++G  + G
Sbjct: 235 SLVAFYLKNQRVDSARKVFDEMTER-DVISWNSIINGYVSNGLAEKG 280


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 271/759 (35%), Positives = 401/759 (52%), Gaps = 111/759 (14%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +Q+H   VK  L++H  + + L+ +Y      N+   R +FD  +    +V +N L+  Y
Sbjct: 122 EQVHCQCVKCGLVHHLSVGNSLVDMYTKT--GNVRDGRRVFDE-MGDRDVVSWNSLLTGY 178

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
            +N+ + +   LFC +      PD +T+  VI   A  GA+  G QIH LV KLGF  ++
Sbjct: 179 SWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGFETER 238

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM--- 214
            V +SL+SM +K G +   R VFD M++KD VSWN +I G+V  G+   A + F+ M   
Sbjct: 239 LVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLA 298

Query: 215 ---PDRDLFS---------------------------------WTCLVDGFSKCGKVEIA 238
              P    F+                                  T L+   +KC +++ A
Sbjct: 299 GAKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDA 358

Query: 239 REIFYRMPN-RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDL----ITWNSMI----- 288
             +F  M   +++VSW AMI+GY++ GD D A  LF  M    +     T+++++     
Sbjct: 359 FSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILTVQHA 418

Query: 289 ------------AGYELNGRFMEAL-----------------ELLET--------MLIG- 310
                         YE +     AL                 EL+ET        ML G 
Sbjct: 419 VFISEIHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGY 478

Query: 311 -------------------DVLPNDATLVSALSA-VAGLAVLNKGRWMHSYIVKNGFVVD 350
                               + PN+ T  S ++A  A  A + +G+  H+Y +K      
Sbjct: 479 AQAGETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQFHAYAIKLRLNNA 538

Query: 351 GVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCR 410
             + + L+ +Y+K G+IESA  +F+   ++ +  W +MI G   HG A +AL++F +M +
Sbjct: 539 LCVSSSLVTLYAKRGNIESAHEIFKRQKERDLVSWNSMISGYAQHGQAKKALEVFEEMQK 598

Query: 411 MGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLE 470
             ++  AITFIGV++AC+HAGLV  G+ YFN+MIND+ I PT+EHY C++D+  R G L 
Sbjct: 599 RNLEVDAITFIGVISACAHAGLVGKGQNYFNIMINDHHINPTMEHYSCMIDLYSRAGMLG 658

Query: 471 EAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYA 530
           +A   I  MP  P   +W  +L+ +R H N ++G+ AA  +I + P     YV+LSNIYA
Sbjct: 659 KAMDIINGMPFPPAATVWRIVLAASRVHRNIELGKLAAEKIISLEPQHSAAYVLLSNIYA 718

Query: 531 AAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRN 590
           AAG W +   VR++M KR  +K+PG S IE +   + F+ GD SHP +D I+SKLSE+  
Sbjct: 719 AAGNWHEKVNVRKLMDKRRVKKEPGYSWIEVKNKTYSFLAGDLSHPLSDHIYSKLSELNT 778

Query: 591 KLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCN 650
           +L+  G+ PDT  V   IED+ +KE  L +HSERLAIAFGLI      P++IVKNLRVC 
Sbjct: 779 RLRDVGYQPDTNYVFHDIEDE-QKETILSHHSERLAIAFGLIATLPEIPLQIVKNLRVCG 837

Query: 651 DCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           DCHS  KL+S +  R I+VRD++RFHHFK G CSC D+W
Sbjct: 838 DCHSFIKLVSLVEKRYIVVRDSNRFHHFKGGLCSCGDYW 876



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 137/461 (29%), Positives = 222/461 (48%), Gaps = 27/461 (5%)

Query: 54  GISSRLLSLYVDPHINNLHYARSIFDRILQHP--SLVLYNLLIKCYVFNQRSHEALTLFC 111
            +++R L    DP      +A+ +FD   Q P   L  +N L+  Y    ++ EAL LF 
Sbjct: 40  ALNARTLLRDSDPR-----FAQQLFD---QTPLRDLKQHNQLLFRYSRCDQTQEALHLFV 91

Query: 112 DLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFG 171
            L    L PD++T+ CV+   A       G+Q+H    K G      V +SLV MY K G
Sbjct: 92  SLYRSGLSPDSYTMSCVLSVCAGSFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTG 151

Query: 172 EIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVD 227
            +  GRRVFD M D+D+VSWN L+ GY      +   +LF  M       D ++ + ++ 
Sbjct: 152 NVRDGRRVFDEMGDRDVVSWNSLLTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIA 211

Query: 228 GFSKCGKVEIAREIFYRM-----PNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLI 282
             +  G V I  +I   +         LV  N++I+   K+G +  A  +FD+ME +D +
Sbjct: 212 ALANQGAVAIGMQIHALVVKLGFETERLVC-NSLISMLSKSGMLRDARVVFDNMENKDSV 270

Query: 283 TWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYI 342
           +WNSMIAG+ +NG+ +EA E    M +    P  AT  S + + A L  L   R +H   
Sbjct: 271 SWNSMIAGHVINGQDLEAFETFNNMQLAGAKPTHATFASVIKSCASLKELGLVRVLHCKT 330

Query: 343 VKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAI-SKKKVGHWTAMIVGLGMHGMATQA 401
           +K+G   +  + T L+   +KC  I+ A ++F  +   + V  WTAMI G   +G   QA
Sbjct: 331 LKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQA 390

Query: 402 LDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVD 461
           ++LF+ M R G+KP   T+  +L    HA  +++     +  +     E +      L+D
Sbjct: 391 VNLFSLMRREGVKPNHFTYSTILTV-QHAVFISE----IHAEVIKTNYEKSSSVGTALLD 445

Query: 462 ILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKD 502
              + G + +A    E +  + + + W ++L+G    G  +
Sbjct: 446 AFVKIGNISDAVKVFELIETK-DVIAWSAMLAGYAQAGETE 485



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 118/255 (46%), Gaps = 3/255 (1%)

Query: 261 MKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLV 320
           ++  D   A +LFD   +RDL   N ++  Y    +  EAL L  ++    + P+  T+ 
Sbjct: 47  LRDSDPRFAQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMS 106

Query: 321 SALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKK 380
             LS  AG      G  +H   VK G V    +G  L+ MY+K G++     VF  +  +
Sbjct: 107 CVLSVCAGSFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDR 166

Query: 381 KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYF 440
            V  W +++ G   +    Q  +LF  M   G +P   T   V+ A ++ G V  G +  
Sbjct: 167 DVVSWNSLLTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIH 226

Query: 441 NMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGN 500
            +++   G E        L+ +L ++G L +A+   ++M  + + V W S+++G   +G 
Sbjct: 227 ALVVK-LGFETERLVCNSLISMLSKSGMLRDARVVFDNMENKDS-VSWNSMIAGHVING- 283

Query: 501 KDIGEYAANNLIKVA 515
           +D+  +   N +++A
Sbjct: 284 QDLEAFETFNNMQLA 298



 Score = 45.8 bits (107), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 78/185 (42%), Gaps = 33/185 (17%)

Query: 31  SSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLY 90
           +++ ++ +Q HA ++K  L     +SS L++LY      N+  A  IF R  +   LV +
Sbjct: 517 TASVEQGKQFHAYAIKLRLNNALCVSSSLVTLYAKR--GNIESAHEIFKR-QKERDLVSW 573

Query: 91  NLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFK 150
           N +I  Y  + ++ +AL +F ++  R L  D  T   VI   A  G + +G+    ++  
Sbjct: 574 NSMISGYAQHGQAKKALEVFEEMQKRNLEVDAITFIGVISACAHAGLVGKGQNYFNIMIN 633

Query: 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
                                         D   +  +  ++C+ID Y + G +  AM +
Sbjct: 634 ------------------------------DHHINPTMEHYSCMIDLYSRAGMLGKAMDI 663

Query: 211 FDEMP 215
            + MP
Sbjct: 664 INGMP 668


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 231/639 (36%), Positives = 359/639 (56%), Gaps = 50/639 (7%)

Query: 100 NQRSHEALTLFCD---------LLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFK 150
           ++R  EA+ + C          +L +   P       +I+   +   +++GK++H  +  
Sbjct: 39  HKRFDEAIHILCQQNRLKEALQILHQIDKPSASVYSTLIQSCIKSRLLQQGKKVHQHIKL 98

Query: 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
            GF    F+L+ L+ MYAK   +   +++FD M ++DL SWN LI GY K G ++ A  L
Sbjct: 99  SGFVPGLFILNRLLEMYAKCDSLMDSQKLFDEMPERDLCSWNILISGYAKMGLLQEAKSL 158

Query: 211 FDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMP------------------------ 246
           FD+MP+RD FSWT ++ G+ +  +   A E+F  M                         
Sbjct: 159 FDKMPERDNFSWTAMISGYVRHDRPNEALELFRMMKRSDNSKSNKFTVSSALAAAAAVPC 218

Query: 247 ----------------NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAG 290
                           + + V W+A+ + Y K G ++ A  +FD M  RD++TW +MI  
Sbjct: 219 LRIGKEIHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDR 278

Query: 291 YELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVD 350
           Y  +GR  E  +L   +L   + PN+ T    L+A A       G+ +H Y+ + GF   
Sbjct: 279 YFQDGRRKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPF 338

Query: 351 GVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCR 410
               + L+ MYSKCG++ SA  VF+   +  +  WT++I G   +G   +A+  F  + +
Sbjct: 339 SFAASALVHMYSKCGNMVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVK 398

Query: 411 MGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLE 470
            G +P  ITF+GVL+AC+HAGLV+ G  YF+ +   YG+  T +HY C++D+L R+G  +
Sbjct: 399 SGTQPDHITFVGVLSACAHAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQFD 458

Query: 471 EAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYA 530
           EA++ I  M M+P+  +W SLL G R HGN  + + AA  L ++ P+    YV L+NIYA
Sbjct: 459 EAENIISKMSMKPDKFLWASLLGGCRIHGNLKLAQRAAEALFEIEPENPATYVTLANIYA 518

Query: 531 AAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRN 590
            AG W +V+++R+ M  RG  K PG S I  +  +H F+VGD SHP++ EI+  L ++  
Sbjct: 519 TAGMWSEVAKIRKTMDDRGVVKKPGLSWIAIKRDVHVFLVGDDSHPKSKEINEFLGKLSK 578

Query: 591 KLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCN 650
           ++K  G VPDT  VL  +ED+ +KE  L  HSE+LA+AFG+I+    +PI++ KNLR C 
Sbjct: 579 RMKEEGFVPDTNFVLHDVEDE-QKEQNLSYHSEKLAVAFGIISTPEGTPIKVFKNLRTCV 637

Query: 651 DCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           DCH+  K +S I NR+IIVRD++RFH F++G CSC+D+W
Sbjct: 638 DCHTAIKFISKITNRKIIVRDSNRFHFFEDGHCSCRDYW 676


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
          Length = 1047

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 238/660 (36%), Positives = 376/660 (56%), Gaps = 12/660 (1%)

Query: 38   QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
            QQLHA + K     +  I   LL+LY     +++  A + F    +  ++VL+N+++  Y
Sbjct: 392  QQLHAYTTKLGFASNDKIEGALLNLYA--KCSDIETALNYFLET-EVENVVLWNVMLVAY 448

Query: 98   VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
                    +  +F  +    ++P+ +T P ++K   RLG ++ G+QIH  + K  F  + 
Sbjct: 449  GLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNA 508

Query: 158  FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
            +V S L+ MYAK G++D    +      KD+VSW  +I GY +    + A+  F +M DR
Sbjct: 509  YVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDR 568

Query: 218  DLFS-WTCLVDGFSKCGKVEIARE-------IFYRMPNRNLVSWNAMINGYMKAGDVDSA 269
             + S    L +  S C  ++  +E             + +L   NA++  Y K G+++ A
Sbjct: 569  GIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSKCGNIEEA 628

Query: 270  CELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGL 329
               F+  E  D I WN++++G++ +G   EAL +   M    +  N+ T  SA+ A +  
Sbjct: 629  YLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAASET 688

Query: 330  AVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMI 389
            A + +G+ +H+ I K G+  +  +   +I MY+KCGSI  A   F  +S K    W AMI
Sbjct: 689  ANMKQGKQVHAVITKTGYDSETEVCNAIISMYAKCGSISDAKKQFLELSMKNEVSWNAMI 748

Query: 390  VGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGI 449
                 HG  ++ALD F++M    ++P  +T +GVL+ACSH GLV+ G  YF  M  +YG+
Sbjct: 749  NAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIEYFESMNTEYGL 808

Query: 450  EPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAAN 509
             P  EHY C+VD+L R G L  AK  I  MP+ P+ ++W +LLS    H N +IGE+AA+
Sbjct: 809  APKPEHYVCVVDMLTRAGLLSRAKDFILEMPIEPDALVWRTLLSACVVHKNMEIGEFAAH 868

Query: 510  NLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFV 569
            +L+++ P+    YV+LSN+YA   +WD     R+ MK++G +K+PG S IE +  +H F 
Sbjct: 869  HLLELEPEDSATYVLLSNLYAVCRKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFY 928

Query: 570  VGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAF 629
            VGD++HP  DEIH    ++  +    G+V D   +L  ++ Q++K+  +  HSE+LAI+F
Sbjct: 929  VGDQNHPLADEIHEYFKDLTKRASEIGYVQDCFSLLSELQ-QEQKDPTIFIHSEKLAISF 987

Query: 630  GLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            GL+++ +  PI ++KNLRVCNDCH   K +S + NREIIVRD  RFHHF+ G+CSCKD+W
Sbjct: 988  GLLSLPATMPINVMKNLRVCNDCHDWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1047



 Score =  152 bits (383), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 124/488 (25%), Positives = 231/488 (47%), Gaps = 22/488 (4%)

Query: 28  LKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSL 87
           LK + +  E ++LH+  +K     ++ +S +LL  Y+     +L  A  +FD + +  ++
Sbjct: 78  LKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYL--FKGDLDGALKVFDEMPER-TI 134

Query: 88  VLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEG--KQIH 145
             +N +IK       S +   LF  +++  + P+  T   V++ A R G++     +QIH
Sbjct: 135 FTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLE-ACRGGSVAFDVVEQIH 193

Query: 146 GLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVE 205
             +   G G    V + L+ +Y++ G +D  RRVFD +  KD  SW  +I G + K E E
Sbjct: 194 ARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISG-LSKNECE 252

Query: 206 V-AMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS----WNAM 256
           V A++LF +M    +    ++++ ++    K   +EI  ++   +      S     NA+
Sbjct: 253 VEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNAL 312

Query: 257 INGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPND 316
           ++ Y   G + SA  +F +M  RD +T+N++I G    G   +A+EL + M +  + P+ 
Sbjct: 313 VSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDS 372

Query: 317 ATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRA 376
            TL S + A +    L  G+ +H+Y  K GF  +  +   L+ +Y+KC  IE+AL  F  
Sbjct: 373 NTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLE 432

Query: 377 ISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDG 436
              + V  W  M+V  G+      +  +F +M    + P   T+  +L  C   G +  G
Sbjct: 433 TEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELG 492

Query: 437 RRYFNMMINDYGIEPTIEHYGC--LVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG 494
            +  + +I        +  Y C  L+D+  + G L+ A   +     + + V W ++++G
Sbjct: 493 EQIHSQIIK---TSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGK-DVVSWTTMIAG 548

Query: 495 ARNHGNKD 502
              +   D
Sbjct: 549 YTQYNFDD 556



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 115/498 (23%), Positives = 212/498 (42%), Gaps = 108/498 (21%)

Query: 120 PDNFTLPCVIKGAARL-GAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRR 178
           P++ TL  +++G  +  G++ EG+++H  + KLGF                         
Sbjct: 65  PNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGF------------------------- 99

Query: 179 VFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGF---SKCGKV 235
                 D +      L+D Y+ KG+++ A+K+FDEMP+R +F+W  ++      S  GKV
Sbjct: 100 ------DNNACLSEKLLDFYLFKGDLDGALKVFDEMPERTIFTWNKMIKELASRSLSGKV 153

Query: 236 -------------------------------------EIAREIFYRMPNRNLVSWNAMIN 258
                                                +I   I Y+   ++ +  N +I+
Sbjct: 154 FCLFGRMVNENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARIIYQGLGKSTIVCNPLID 213

Query: 259 GYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDAT 318
            Y + G VD A  +FD + ++D  +W +MI+G   N   +EA+ L   M +  ++P    
Sbjct: 214 LYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFCDMYVLGIMPTPYA 273

Query: 319 LVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS 378
             S LSA   +  L  G  +H  ++K GF  D  +   L+ +Y   GS+ SA  +F  +S
Sbjct: 274 FSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMS 333

Query: 379 KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR 438
           ++    +  +I GL   G   +A++LF +M   G++P + T   ++ ACS  G +  G++
Sbjct: 334 QRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQ 393

Query: 439 Y------FNMMIND---------------------YGIEPTIEHYGCLVDILCRTGYLEE 471
                       ND                     Y +E  +E+      +L   G L++
Sbjct: 394 LHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDD 453

Query: 472 AKST------IESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYV-- 523
            +++      ++   + PN   + S+L      G+ ++GE   + +IK +   +  YV  
Sbjct: 454 LRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQ-LNAYVCS 512

Query: 524 VLSNIYAAAGQWDKVSEV 541
           VL ++YA  G+ D   ++
Sbjct: 513 VLIDMYAKLGKLDTAWDI 530


>gi|356528388|ref|XP_003532785.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Glycine max]
          Length = 721

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 246/673 (36%), Positives = 375/673 (55%), Gaps = 66/673 (9%)

Query: 67  HINN--LHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFT 124
           H+NN  L  AR+IFD+I   P + LY +++  Y  N R  EA+    DL  R    D  +
Sbjct: 65  HLNNRSLDEARAIFDQI-PTPHVSLYTIMLHAYAQNHRLREAI----DLFRRIPFKDVVS 119

Query: 125 LPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYA------KFGEIDLGRR 178
              +IKG    G I   +++          FD+    ++VS         + G +     
Sbjct: 120 WNSIIKGCLHCGDIVTARKL----------FDEMPRRTVVSWTTLVDGLLRLGIVQEAET 169

Query: 179 VFDAMD--DKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVE 236
           +F AM+  D+D+ +WN +I GY   G V+ A++LF +MP RD+ SW+ ++ G    GK E
Sbjct: 170 LFWAMEPMDRDVAAWNAMIHGYCSNGRVDDALQLFCQMPSRDVISWSSMIAGLDHNGKSE 229

Query: 237 IAREIFYRM-----------------PNRNLVSWN-----------------------AM 256
            A  +F  M                     + +W                        ++
Sbjct: 230 QALVLFRDMVASGVCLSSGVLVCGLSAAAKIPAWRVGIQIHCSVFKLGDWHFDEFVSASL 289

Query: 257 INGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPND 316
           +  Y     +++AC +F ++  + ++ W +++ GY LN +  EALE+   M+  DV+PN+
Sbjct: 290 VTFYAGCKQMEAACRVFGEVVYKSVVIWTALLTGYGLNDKHREALEVFGEMMRIDVVPNE 349

Query: 317 ATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRA 376
           ++  SAL++  GL  + +G+ +H+  VK G    G +G  L+ MYSKCG +  A+ VF+ 
Sbjct: 350 SSFTSALNSCCGLEDIERGKVIHAAAVKMGLESGGYVGGSLVVMYSKCGYVSDAVYVFKG 409

Query: 377 ISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDG 436
           I++K V  W ++IVG   HG    AL LFN+M R G+ P  IT  G+L+ACSH+G++   
Sbjct: 410 INEKNVVSWNSVIVGCAQHGCGMWALALFNQMLREGVDPDGITVTGLLSACSHSGMLQKA 469

Query: 437 RRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGAR 496
           R +F        +  TIEHY  +VD+L R G LEEA++ + SMPM+ N ++W++LLS  R
Sbjct: 470 RCFFRYFGQKRSVTLTIEHYTSMVDVLGRCGELEEAEAVVMSMPMKANSMVWLALLSACR 529

Query: 497 NHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGS 556
            H N D+ + AAN + ++ PD    YV+LSN+YA++ +W +V+ +R  MK  G  K PGS
Sbjct: 530 KHSNLDLAKRAANQIFEIEPDCSAAYVLLSNLYASSSRWAEVALIRRKMKHNGVVKKPGS 589

Query: 557 SSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEA 616
           S +  +G  H+F+  D+SHP  ++I+ KL  +  KLK  G+VPD    L  +E + +KE 
Sbjct: 590 SWLTLKGQKHKFLSADRSHPLAEKIYQKLEWLGVKLKELGYVPDQQFALHDVETE-QKEE 648

Query: 617 ELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFH 676
            L  HSERLAIAFGL++    S I ++KNLRVC DCH+  KL++ I +REI+VRD+SRFH
Sbjct: 649 MLSYHSERLAIAFGLLSTVEGSAITVMKNLRVCGDCHNAIKLMAKIVDREIVVRDSSRFH 708

Query: 677 HFKNGSCSCKDFW 689
            FKNG CSC D+W
Sbjct: 709 DFKNGICSCGDYW 721


>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 595

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 232/596 (38%), Positives = 351/596 (58%), Gaps = 45/596 (7%)

Query: 138 IKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAK--FGEIDLGRRVFDAMDDKDLVSWNCLI 195
           +K+ KQI   + K     +  + +  +++      G++   +RVF+ +   +   WN +I
Sbjct: 1   MKQLKQIQAQMIKTAIITEPKLATKFLTLCTSPHVGDLLYAQRVFNGITSPNTFMWNAII 60

Query: 196 DGYVKKGEVEVAMKLFDEMPDR-------------------------------------- 217
             Y    E E+A   + +M                                         
Sbjct: 61  RAYSNSDEPELAFLSYQQMLSSSVPHNSYTFPFLLRACRNLLAMGEALQVHGLVIKLGFG 120

Query: 218 -DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDM 276
            D+F+   L+  ++ CG++  AR++F  +P R+ VSWN MI+GY+K+GDV +A  +F DM
Sbjct: 121 SDVFALNALLHVYALCGEIHCARQLFDNIPERDAVSWNIMIDGYIKSGDVKTAYGVFLDM 180

Query: 277 EIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGR 336
            ++++++W S+I+G    G+ +EAL L   M       +   + S L+A A L  L++GR
Sbjct: 181 PLKNVVSWTSLISGLVEAGQSVEALSLCYEMQNAGFELDGVAIASLLTACANLGALDQGR 240

Query: 337 WMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAI--SKKKVGHWTAMIVGLGM 394
           W+H Y++ NG  VD V+G  L+ MY KCG +E AL+VF  +  ++K V  WTAMI G  +
Sbjct: 241 WLHFYVLNNGVDVDRVIGCALVNMYVKCGDMEEALSVFGKLKGNQKDVYIWTAMIDGFAI 300

Query: 395 HGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIE 454
           HG   +AL+ FN+M R G++P +ITF  VL ACS+ GLV +G+  F  M   Y + P+IE
Sbjct: 301 HGRGVEALEWFNRMRREGIRPNSITFTAVLRACSYGGLVEEGKELFKSMKCFYNVNPSIE 360

Query: 455 HYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKV 514
           HYGC+VD+L R+G L+EAK  I+ MPM+P+ VIW +LL     H +  +G     +L++V
Sbjct: 361 HYGCMVDLLGRSGRLDEAKELIKKMPMKPSAVIWGALLKACWIHRDFLLGSQVGAHLVEV 420

Query: 515 APDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKS 574
             D  G Y+ L+ I AA G+W + +EVR  MK  G    PG SS+   G++HEF+ G + 
Sbjct: 421 DSDHSGRYIQLATILAAEGKWKEAAEVRLKMKSLGVPISPGKSSVTLNGIVHEFLAGHQD 480

Query: 575 HPQTDEIHSKLSEMRNKLKA-AGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLIN 633
           HPQ ++I  KL ++  +L+   G+ P T  +LL +E++ EKE  +  HSE+LAIAFGLIN
Sbjct: 481 HPQMEQIQLKLKQIAERLRQDEGYEPATKDLLLDLENE-EKETAMAQHSEKLAIAFGLIN 539

Query: 634 VKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            K  + IR++KNLR+C DCH+V KL+S IY+REII+RD  RFHHF++GSCSCKD+W
Sbjct: 540 TKPGTTIRVIKNLRICRDCHTVAKLVSQIYSREIIMRDRVRFHHFRDGSCSCKDYW 595



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 120/434 (27%), Positives = 209/434 (48%), Gaps = 75/434 (17%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           K+ +Q+ A  +KT +I    ++++ L+L   PH+ +L YA+ +F+ I   P+  ++N +I
Sbjct: 2   KQLKQIQAQMIKTAIITEPKLATKFLTLCTSPHVGDLLYAQRVFNGITS-PNTFMWNAII 60

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
           + Y  +     A   +  +L   +  +++T P +++    L A+ E  Q+HGLV KLGFG
Sbjct: 61  RAYSNSDEPELAFLSYQQMLSSSVPHNSYTFPFLLRACRNLLAMGEALQVHGLVIKLGFG 120

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
            D F L++L+ +YA  GEI   R++FD + ++D VSWN +IDGY+K G+V+ A  +F +M
Sbjct: 121 SDVFALNALLHVYALCGEIHCARQLFDNIPERDAVSWNIMIDGYIKSGDVKTAYGVFLDM 180

Query: 215 PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNL------------------------ 250
           P +++ SWT L+ G  + G+   A  + Y M N                           
Sbjct: 181 PLKNVVSWTSLISGLVEAGQSVEALSLCYEMQNAGFELDGVAIASLLTACANLGALDQGR 240

Query: 251 ---------------VSWNAMINGYMKAGDVDSACELFDDME--IRDLITWNSMIAGYEL 293
                          V   A++N Y+K GD++ A  +F  ++   +D+  W +MI G+ +
Sbjct: 241 WLHFYVLNNGVDVDRVIGCALVNMYVKCGDMEEALSVFGKLKGNQKDVYIWTAMIDGFAI 300

Query: 294 NGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVL 353
           +GR +EALE    M    + PN  T  + L A +   ++ +G+ +   +           
Sbjct: 301 HGRGVEALEWFNRMRREGIRPNSITFTAVLRACSYGGLVEEGKELFKSM----------- 349

Query: 354 GTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGM 413
                    KC         F  ++   + H+  M+  LG  G   +A +L  K   M M
Sbjct: 350 ---------KC---------FYNVN-PSIEHYGCMVDLLGRSGRLDEAKELIKK---MPM 387

Query: 414 KPTAITFIGVLNAC 427
           KP+A+ +  +L AC
Sbjct: 388 KPSAVIWGALLKAC 401


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 245/661 (37%), Positives = 387/661 (58%), Gaps = 15/661 (2%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +++H L VK+         + L ++Y       ++ AR +FDR+ +   LV +N ++  Y
Sbjct: 155 KEIHGLLVKSGFSLDLFAMTGLENMYAK--CRQVNEARKVFDRMPER-DLVSWNTIVAGY 211

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
             N  +  AL +   + +  L P   T+  V+   + L  I  GK+IHG   + GF    
Sbjct: 212 SQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLV 271

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
            + ++LV MYAK G ++  R++FD M ++++VSWN +ID YV+    + AM +F +M D 
Sbjct: 272 NISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDE 331

Query: 218 DLFSWTCLVDGF----SKCGKVEIAREIFYRMP-----NRNLVSWNAMINGYMKAGDVDS 268
            +      V G     +  G +E  R I +++      +RN+   N++I+ Y K  +VD+
Sbjct: 332 GVKPTDVSVMGALHACADLGDLERGRFI-HKLSVELGLDRNVSVVNSLISMYCKCKEVDT 390

Query: 269 ACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAG 328
           A  +F  ++ R L++WN+MI G+  NGR ++AL     M    V P+  T VS ++A+A 
Sbjct: 391 AASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAE 450

Query: 329 LAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAM 388
           L++ +  +W+H  ++++    +  + T L+ MY+KCG+I  A  +F  +S++ V  W AM
Sbjct: 451 LSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAM 510

Query: 389 IVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYG 448
           I G G HG    AL+LF +M +  +KP  +TF+ V++ACSH+GLV  G + F MM  +Y 
Sbjct: 511 IDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYS 570

Query: 449 IEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAA 508
           IE +++HYG +VD+L R G L EA   I  MP++P   ++ ++L   + H N +  E AA
Sbjct: 571 IELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAA 630

Query: 509 NNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEF 568
             L ++ PD  G +V+L+NIY AA  W+KV +VR  M ++G RK PG S +E +  +H F
Sbjct: 631 ERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSF 690

Query: 569 VVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIA 628
             G  +HP + +I++ L ++   +K AG+VPDT  VL    D KE+   L  HSE+LAI+
Sbjct: 691 FSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVLGVENDVKEQ--LLSTHSEKLAIS 748

Query: 629 FGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDF 688
           FGL+N  + + I + KNLRVC DCH+ TK +S +  REI+VRD  RFHHFKNG+CSC D+
Sbjct: 749 FGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGDY 808

Query: 689 W 689
           W
Sbjct: 809 W 809



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 130/512 (25%), Positives = 235/512 (45%), Gaps = 75/512 (14%)

Query: 27  ILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPS 86
           +L+  S+ KE +Q+  L  K  L       ++L+SL+      ++  A  +F+ I    +
Sbjct: 43  LLERCSSLKELRQILPLVFKNGLYQEHFFQTKLVSLFC--RYGSVDEAARVFEPIDSKLN 100

Query: 87  LVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHG 146
            VLY+ ++K +       +AL  F  +    + P  +    ++K       ++ GK+IHG
Sbjct: 101 -VLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHG 159

Query: 147 LVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEV 206
           L+ K GF  D F ++ L +MYAK  +++  R+VFD M ++DLVSWN ++ GY + G   +
Sbjct: 160 LLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARM 219

Query: 207 AMKLFDEMPDRDLFS---------------------------------------WTCLVD 227
           A+++   M + +L                                          T LVD
Sbjct: 220 ALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVD 279

Query: 228 GFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSM 287
            ++KCG +E AR++F  M  RN+VSWN+MI+ Y++                         
Sbjct: 280 MYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQ------------------------- 314

Query: 288 IAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGF 347
                 N    EA+ + + ML   V P D +++ AL A A L  L +GR++H   V+ G 
Sbjct: 315 ------NENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGL 368

Query: 348 VVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNK 407
             +  +   LI MY KC  +++A ++F  +  + +  W AMI+G   +G    AL+ F++
Sbjct: 369 DRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQ 428

Query: 408 MCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTG 467
           M    +KP   T++ V+ A +   + +   ++ + ++    ++  +     LVD+  + G
Sbjct: 429 MRSRTVKPDTFTYVSVITAIAELSITHHA-KWIHGVVMRSCLDKNVFVTTALVDMYAKCG 487

Query: 468 YLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
            +  A+   + M  R +   W +++ G   HG
Sbjct: 488 AIMIARLIFDMMSER-HVTTWNAMIDGYGTHG 518


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 258/688 (37%), Positives = 390/688 (56%), Gaps = 44/688 (6%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +QLH  S++      +  ++ L+++Y    +  +  ++++F+  +    +V +N +I  +
Sbjct: 217 KQLHGYSLRVG-DQKTFTNNALMAMYAK--LGRVDDSKALFESFVDR-DMVSWNTMISSF 272

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLG-FGFD 156
             + R  EAL  F  ++   +  D  T+  V+   + L  +  GK+IH  V +      +
Sbjct: 273 SQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIEN 332

Query: 157 KFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD 216
            FV S+LV MY    +++ GRRVFD +  + +  WN +I GY + G  E A+ LF EM  
Sbjct: 333 SFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIK 392

Query: 217 RD--LFSWTCLVDGFSKCGKVEI----------AREIFYRMPNRNLVSWNAMINGYMKAG 264
               L + T +      C   E           A ++ ++    +    NA+++ Y + G
Sbjct: 393 VAGLLPNTTTMASVMPACVHCEAFSNKESIHGYAVKLGFK---EDRYVQNALMDMYSRMG 449

Query: 265 DVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETM----------------- 307
            +D +  +FD ME+RD ++WN+MI GY L+GR+  AL LL  M                 
Sbjct: 450 KMDISETIFDSMEVRDRVSWNTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDE 509

Query: 308 LIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSI 367
             G   PN  TL++ L   A LA + KG+ +H+Y ++N    D  +G+ L+ MY+KCG +
Sbjct: 510 KGGPYKPNAITLMTVLPGCAALAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCL 569

Query: 368 ESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMC----RMG-MKPTAITFIG 422
             +  VF  +  K V  W  +I+  GMHG   +AL+LF  M     R G  KP  +TFI 
Sbjct: 570 NLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFIT 629

Query: 423 VLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMR 482
           V  ACSH+GL+++G   F  M +D+G+EPT +HY C+VD+L R G LEEA   + +MP  
Sbjct: 630 VFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAE 689

Query: 483 PNFV-IWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEV 541
            + V  W SLL   R H N ++GE AA NL+ + P+    YV+LSNIY++AG W+K  EV
Sbjct: 690 FDKVGAWSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEV 749

Query: 542 REMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDT 601
           R+ M++ G +K+PG S IE R  +H+F+ GD SHPQ++++H  L  +  K++  G+VPDT
Sbjct: 750 RKNMRQMGVKKEPGCSWIEFRDEVHKFMAGDVSHPQSEQLHGFLETLSEKMRKEGYVPDT 809

Query: 602 TQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSG 661
           + VL  + D+ EKE  L  HSE+LAIAFG++N    + IR+ KNLRVCNDCH+ TK +S 
Sbjct: 810 SCVLHNV-DEDEKENLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHAATKFISK 868

Query: 662 IYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           I  REIIVRD  RFHHFK G+CSC D+W
Sbjct: 869 IMEREIIVRDVRRFHHFKEGTCSCGDYW 896



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 118/404 (29%), Positives = 207/404 (51%), Gaps = 17/404 (4%)

Query: 105 EALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKF-VLSSL 163
           EA++ + ++      PDNF  P V+K  + L  +K G+QIH    K G+G     V ++L
Sbjct: 75  EAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTL 134

Query: 164 VSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFD--EMPDRDLFS 221
           V+MY K G I    +VFD + D+D VSWN  I    +  + E A++ F   +M + +L S
Sbjct: 135 VNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRFEKWEQALEAFRAMQMENMELSS 194

Query: 222 WTCLVDGFSKCGKVEIAREI---------FYRMPNRNLVSWNAMINGYMKAGDVDSACEL 272
           +T LV     C  + +   +           R+ ++   + NA++  Y K G VD +  L
Sbjct: 195 FT-LVSVALACSNLGVMHGLRLGKQLHGYSLRVGDQKTFTNNALMAMYAKLGRVDDSKAL 253

Query: 273 FDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVL 332
           F+    RD+++WN+MI+ +  + RF EAL     M++  V  +  T+ S L A + L  L
Sbjct: 254 FESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERL 313

Query: 333 NKGRWMHSYIVKNG-FVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVG 391
           + G+ +H+Y+++N   + +  +G+ L+ MY  C  +ES   VF  I  +++  W AMI G
Sbjct: 314 DVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISG 373

Query: 392 LGMHGMATQALDLFNKMCRM-GMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIE 450
              +G+  +AL LF +M ++ G+ P   T   V+ AC H    ++        +   G +
Sbjct: 374 YARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCEAFSNKESIHGYAVK-LGFK 432

Query: 451 PTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG 494
                   L+D+  R G ++ +++  +SM +R + V W ++++G
Sbjct: 433 EDRYVQNALMDMYSRMGKMDISETIFDSMEVR-DRVSWNTMITG 475



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 130/499 (26%), Positives = 228/499 (45%), Gaps = 37/499 (7%)

Query: 35  KETQQLHALSVKTNLIYHS-GISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLL 93
           K  +Q+HA +VK      S  +++ L+++Y       +     +FDRI      V +N  
Sbjct: 109 KTGEQIHAAAVKFGYGSSSVTVANTLVNMY--GKCGGIGDVCKVFDRITDRDQ-VSWNSF 165

Query: 94  IKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLG---AIKEGKQIHGLVFK 150
           I      ++  +AL  F  +    +   +FTL  V    + LG    ++ GKQ+HG   +
Sbjct: 166 IAALCRFEKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLR 225

Query: 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
           +G     F  ++L++MYAK G +D  + +F++  D+D+VSWN +I  + +      A+  
Sbjct: 226 VG-DQKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAF 284

Query: 211 FD----EMPDRDLFSWTCLVDGFSKCGKVEIAREIF-YRMPNRNLVS----WNAMINGYM 261
           F     E  + D  +   ++   S   ++++ +EI  Y + N +L+      +A+++ Y 
Sbjct: 285 FRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYC 344

Query: 262 KAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALEL-LETMLIGDVLPNDATLV 320
               V+S   +FD +  R +  WN+MI+GY  NG   +AL L +E + +  +LPN  T+ 
Sbjct: 345 NCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMA 404

Query: 321 SALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKK 380
           S + A       +    +H Y VK GF  D  +   L+ MYS+ G ++ + T+F ++  +
Sbjct: 405 SVMPACVHCEAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVR 464

Query: 381 KVGHWTAMIVGLGMHGMATQALDLFNKMCRM-----------------GMKPTAITFIGV 423
               W  MI G  + G  + AL L ++M RM                   KP AIT + V
Sbjct: 465 DRVSWNTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTV 524

Query: 424 LNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRP 483
           L  C+    +  G+      I +  +   I     LVD+  + G L  ++     MP + 
Sbjct: 525 LPGCAALAAIAKGKEIHAYAIRNM-LASDITVGSALVDMYAKCGCLNLSRRVFNEMPNK- 582

Query: 484 NFVIWMSLLSGARNHGNKD 502
           N + W  L+     HG  +
Sbjct: 583 NVITWNVLIMACGMHGKGE 601



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 99/220 (45%), Gaps = 9/220 (4%)

Query: 279 RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWM 338
           R   +W   +     +  F EA+     M +    P++    + L AV+GL  L  G  +
Sbjct: 55  RSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQI 114

Query: 339 HSYIVKNGFVVDGV-LGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGM 397
           H+  VK G+    V +   L+ MY KCG I     VF  I+ +    W + I  L     
Sbjct: 115 HAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRFEK 174

Query: 398 ATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDY----GIEPTI 453
             QAL+ F  M    M+ ++ T + V  ACS+ G+++  R      ++ Y    G + T 
Sbjct: 175 WEQALEAFRAMQMENMELSSFTLVSVALACSNLGVMHGLR--LGKQLHGYSLRVGDQKTF 232

Query: 454 EHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLS 493
            +   L+ +  + G ++++K+  ES   R + V W +++S
Sbjct: 233 TN-NALMAMYAKLGRVDDSKALFESFVDR-DMVSWNTMIS 270


>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
 gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 259/697 (37%), Positives = 383/697 (54%), Gaps = 49/697 (7%)

Query: 1   MQTQTLQHSSPIHALQQHLPSRLHWNILKFSSTHKETQQLHA-LSVKTNLIYHSGISSRL 59
           + TQ  Q S    AL + L ++    IL  +   K  ++LH+ + +  NL  +  +  +L
Sbjct: 22  LTTQKPQLSPKFTALTEDLCNK----ILDVNPDAKTLKKLHSKILIDQNLHPNPSLGIKL 77

Query: 60  LSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLL 119
           +  Y         Y R IFD I    ++V +N++I+ YV N    +AL +F  + ++   
Sbjct: 78  MRAYA--ACGEPCYTRHIFDEITDK-NVVFFNVMIRSYVNNGLYQDALLVFKTMANQGFY 134

Query: 120 PDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRV 179
           PDN+T PCV+K  +  G +  G QIHG V KLG   + ++ + LVSMY K   +D  RRV
Sbjct: 135 PDNYTYPCVLKACSVSGNLWVGLQIHGAVVKLGLDMNLYIGNGLVSMYGKCKWLDAARRV 194

Query: 180 FDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAR 239
                                           DEMP RD+ SW  +V G+++ G+   A 
Sbjct: 195 L-------------------------------DEMPGRDMVSWNSMVAGYAQNGRFNDAL 223

Query: 240 EIFYRMPNRNLVSWNAMINGYMKAGDVDSACE-------LFDDMEIRDLITWNSMIAGYE 292
           ++   M +  L   +A   G +     +++C+       +F  ++ + LI+WN MIA Y 
Sbjct: 224 KLCREMEDLKLKP-DAGTMGSLLPAVTNTSCDNVLYVKDMFVKLKEKSLISWNVMIAVYV 282

Query: 293 LNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV 352
            N    EA++L   M +  V P+  ++ S L A   L+    GR +H Y+ +     + +
Sbjct: 283 NNAMPNEAVDLYLQMQVHGVEPDAVSISSVLPACGDLSAAVLGRRIHEYVERKKLRPNLL 342

Query: 353 LGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG 412
           L   LI MY+KCG ++ A  VF  +  + V  WT+MI   GM G    A+ LF KM   G
Sbjct: 343 LENALIDMYAKCGCLKEARAVFDQMMFRDVVSWTSMISAYGMSGQGKDAVALFKKMRDSG 402

Query: 413 MKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEA 472
             P  I F+ VL ACSHAGLV++GR  FN+M  +YGI P IEHY C+VD+L R G ++EA
Sbjct: 403 FTPDWIAFVSVLAACSHAGLVDEGRYCFNLMA-EYGITPGIEHYNCMVDLLGRAGKIDEA 461

Query: 473 KSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAA 532
                 MPM PN  +W SLLS  R + + +I   AA++L ++AP+  G YV+LSNIYA A
Sbjct: 462 YHLTRQMPMEPNERVWGSLLSACRVYSSMNIALLAADHLFQLAPEQSGYYVLLSNIYAKA 521

Query: 533 GQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKL 592
           G+W  V  VR +M  +G +K PG+S++E    ++ F+ GD+SH Q+ EI+  L  +  ++
Sbjct: 522 GRWQDVETVRSIMNSKGIKKIPGNSNVEINDHVYTFLAGDQSHTQSKEIYKALGVLVGRM 581

Query: 593 KAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDC 652
           K  G++P+T   L  +E++ +KE  L  HSE+LAI F ++N K  S IRI KN+RVC DC
Sbjct: 582 KELGYMPETDSALHDVEEE-DKECHLAVHSEKLAIVFAILNTKPGSTIRITKNIRVCGDC 640

Query: 653 HSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           H  TKL+S I  REII+RD  RFHHF++G CSC D+W
Sbjct: 641 HVATKLISKIAEREIIIRDTHRFHHFRDGVCSCGDYW 677


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 247/660 (37%), Positives = 383/660 (58%), Gaps = 12/660 (1%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +++H L +K  L      ++ L+ +Y       +  A ++F  I  HP +V +N +I   
Sbjct: 203 RKIHGLMLKMGLDLDQFSANALVDMY--SKAGEIEGAVAVFQDI-AHPDVVSWNAIIAGC 259

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
           V +  +  AL L  ++      P+ FTL   +K  A +G  + G+Q+H  + K+    D 
Sbjct: 260 VLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDL 319

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
           F    LV MY+K   +D  RR +D+M  KD+++WN LI GY + G+   A+ LF +M   
Sbjct: 320 FAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSE 379

Query: 218 DL-FSWTCL---VDGFSKCGKVEIAREIFYRMPNRNLVS----WNAMINGYMKAGDVDSA 269
           D+ F+ T L   +   +    +++ ++I        + S     N++++ Y K   +D A
Sbjct: 380 DIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEA 439

Query: 270 CELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGL 329
            ++F++    DL+ + SMI  Y   G   EAL+L   M   D+ P+     S L+A A L
Sbjct: 440 SKIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANL 499

Query: 330 AVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMI 389
           +   +G+ +H + +K GF+ D      L+ MY+KCGSIE A   F  I  + +  W+AMI
Sbjct: 500 SAYEQGKQLHVHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMI 559

Query: 390 VGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGI 449
            G   HG   +AL LFN+M R G+ P  IT + VL AC+HAGLVN+G++YF  M   +GI
Sbjct: 560 GGYAQHGHGKEALRLFNQMLRDGVPPNHITLVSVLCACNHAGLVNEGKQYFEKMEVMFGI 619

Query: 450 EPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAAN 509
           +PT EHY C++D+L R+G L EA   + S+P   +  +W +LL  AR H N ++G+ AA 
Sbjct: 620 KPTQEHYACMIDLLGRSGKLNEAVELVNSIPFEADGFVWGALLGAARIHKNIELGQKAAK 679

Query: 510 NLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFV 569
            L  + P+  G +V+L+NIYA+AG W+ V++VR+ MK    +K+PG S IE +  ++ F+
Sbjct: 680 MLFDLEPEKSGTHVLLANIYASAGMWENVAKVRKFMKDSKVKKEPGMSWIEIKDKVYTFI 739

Query: 570 VGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAF 629
           VGD+SH ++DEI++KL ++ + L  AG+     ++ +   D+ EKE  L +HSE+LA+AF
Sbjct: 740 VGDRSHSRSDEIYAKLDQLGDLLSKAGY-SSIVEIDIHNVDKSEKEKLLYHHSEKLAVAF 798

Query: 630 GLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           GLI      PIR+ KNLR+C DCH+  K +  I +REIIVRD +RFHHFK+GSCSC D+W
Sbjct: 799 GLIATPPGGPIRVKKNLRICVDCHTFFKFVCKIVSREIIVRDINRFHHFKDGSCSCGDYW 858



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 140/566 (24%), Positives = 258/566 (45%), Gaps = 84/566 (14%)

Query: 26  NILKFSSTHKET---QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRIL 82
           ++LK  S  ++    +++H ++V T       +++ L+ +Y    +  L  +R +F  I+
Sbjct: 87  SVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGL--LDDSRRLFGGIV 144

Query: 83  QHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGK 142
           +  ++V +N L  CYV ++   EA+ LF +++   ++P+ F++  ++   A L     G+
Sbjct: 145 ER-NVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAGLQEGDLGR 203

Query: 143 QIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKG 202
           +IHGL+ K+G   D+F  ++LV MY+K GEI+    VF  +   D+VSWN +I G V   
Sbjct: 204 KIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHD 263

Query: 203 EVEVAMKLFDEM------PD---------------------------------RDLFSWT 223
             ++A+ L DEM      P+                                  DLF+  
Sbjct: 264 CNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAV 323

Query: 224 CLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLIT 283
            LVD +SKC  ++ AR  +  MP +++++WNA+I+GY + GD                  
Sbjct: 324 GLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGD------------------ 365

Query: 284 WNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIV 343
                         ++A+ L   M   D+  N  TL + L +VA L  +   + +H+  +
Sbjct: 366 -------------HLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISI 412

Query: 344 KNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALD 403
           K+G   D  +   L+  Y KC  I+ A  +F   + + +  +T+MI     +G   +AL 
Sbjct: 413 KSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEALK 472

Query: 404 LFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDIL 463
           L+ +M    +KP       +LNAC++      G++     I  +G    I     LV++ 
Sbjct: 473 LYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIK-FGFMCDIFASNSLVNMY 531

Query: 464 CRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIK--VAPDTIGC 521
            + G +E+A      +P R   V W +++ G   HG+        N +++  V P+    
Sbjct: 532 AKCGSIEDADRAFSEIPNR-GIVSWSAMIGGYAQHGHGKEALRLFNQMLRDGVPPN---- 586

Query: 522 YVVLSNIYAAAGQWDKVSEVREMMKK 547
           ++ L ++  A      V+E ++  +K
Sbjct: 587 HITLVSVLCACNHAGLVNEGKQYFEK 612



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 143/525 (27%), Positives = 244/525 (46%), Gaps = 16/525 (3%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYV 98
           +LHA  +K        + + L++LY         YAR + D       +V ++ L+  YV
Sbjct: 2   ELHAHLIKFGFSRDPSLRNHLVTLY--SKCRRFGYARKLVDES-SELDVVSWSSLLSGYV 58

Query: 99  FNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKF 158
            N    EAL +F ++    +  + FT P V+K  +    +  G+++HG+    GF  D F
Sbjct: 59  QNGFVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGF 118

Query: 159 VLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRD 218
           V ++LV MYAK G +D  RR+F  + ++++VSWN L   YV+      A+ LF EM    
Sbjct: 119 VANTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSG 178

Query: 219 L----FSWTCLVDGFSKCGKVEIAREIFYRMPNRNL----VSWNAMINGYMKAGDVDSAC 270
           +    FS + +++  +   + ++ R+I   M    L     S NA+++ Y KAG+++ A 
Sbjct: 179 IMPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAV 238

Query: 271 ELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLA 330
            +F D+   D+++WN++IAG  L+     AL LL+ M      PN  TL SAL A A + 
Sbjct: 239 AVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMG 298

Query: 331 VLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIV 390
               GR +HS ++K     D      L+ MYSKC  ++ A   + ++ KK +  W A+I 
Sbjct: 299 FKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALIS 358

Query: 391 GLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIE 450
           G    G    A+ LF+KM    +     T   VL + +    +   ++   + I   GI 
Sbjct: 359 GYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKS-GIY 417

Query: 451 PTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKD--IGEYAA 508
                   L+D   +  +++EA    E      + V + S+++    +G+ +  +  Y  
Sbjct: 418 SDFYVINSLLDTYGKCNHIDEASKIFEERTWE-DLVAYTSMITAYSQYGDGEEALKLYLQ 476

Query: 509 NNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKD 553
                + PD   C  +L N  A    +++  ++     K GF  D
Sbjct: 477 MQDADIKPDPFICSSLL-NACANLSAYEQGKQLHVHAIKFGFMCD 520


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 246/658 (37%), Positives = 386/658 (58%), Gaps = 12/658 (1%)

Query: 40  LHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVF 99
           +H   +K    +    ++ L+ +Y    + +L  A S+F++I Q P +V +N +I   V 
Sbjct: 280 IHGYLIKLGYDWDPFSANALVDMYAK--VGDLADAISVFEKIKQ-PDIVSWNAVIAGCVL 336

Query: 100 NQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFV 159
           ++   +AL L   +    + P+ FTL   +K  A +G  + G+Q+H  + K+    D FV
Sbjct: 337 HEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFV 396

Query: 160 LSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL 219
              LV MY+K   ++  R  F+ + +KDL++WN +I GY +  E   A+ LF EM    +
Sbjct: 397 SVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGI 456

Query: 220 -FSWTCL---VDGFSKCGKVEIAREI----FYRMPNRNLVSWNAMINGYMKAGDVDSACE 271
            F+ T L   +   +    V + R++         + ++   N++I+ Y K   V+ A  
Sbjct: 457 GFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAER 516

Query: 272 LFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAV 331
           +F++  I DL+++ SMI  Y   G+  EAL+L   M   ++ P+     S L+A A L+ 
Sbjct: 517 IFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSA 576

Query: 332 LNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVG 391
             +G+ +H +I+K GFV+D   G  L+ MY+KCGSI+ A   F  ++++ +  W+AMI G
Sbjct: 577 FEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGG 636

Query: 392 LGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP 451
           L  HG   QAL LFN+M + G+ P  IT + VL AC+HAGLV + + YF  M   +G +P
Sbjct: 637 LAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKP 696

Query: 452 TIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNL 511
             EHY C++D+L R G + EA   +  MP   N  +W +LL  AR H + ++G  AA  L
Sbjct: 697 MQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEML 756

Query: 512 IKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVG 571
             + P+  G +V+L+NIYA+AG+W+ V+EVR +M+    +K+PG S IE +  ++ F+VG
Sbjct: 757 FILEPEKSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVG 816

Query: 572 DKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGL 631
           D+SH ++ EI++KL E+ + +  AG+VP   ++ L   +Q EKE  L +HSE+LA+AFGL
Sbjct: 817 DRSHYRSQEIYAKLDELSDLMDKAGYVP-MVEIDLHDVEQSEKELLLYHHSEKLAVAFGL 875

Query: 632 INVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           I     +PIR+ KNLRVC DCH+  K +  I +REIIVRD +RFHHFK+GSCSC D+W
Sbjct: 876 IATPQGAPIRVKKNLRVCVDCHTAFKYICKIVSREIIVRDINRFHHFKDGSCSCGDYW 933



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 101/396 (25%), Positives = 195/396 (49%), Gaps = 11/396 (2%)

Query: 108 TLFCDLLDRF-LLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSM 166
           T   +L+D+    P + +   ++       +++ G QIH  + K G   D  + + L+++
Sbjct: 41  TAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINL 100

Query: 167 YAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM----PDRDLFSW 222
           Y+K       R++ D   + DLVSW+ LI GY + G    A+  F EM       + F++
Sbjct: 101 YSKCRNFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTF 160

Query: 223 TCLVDGFSKCGKVEIAREIFYRMP----NRNLVSWNAMINGYMKAGDVDSACELFDDMEI 278
           + ++   S    + I +++   +       ++   N ++  Y K  +   +  LFD++  
Sbjct: 161 SSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPE 220

Query: 279 RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWM 338
           R++++WN++ + Y       EA+ L   M++  + PN+ +L S ++A  GL   ++G+ +
Sbjct: 221 RNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKII 280

Query: 339 HSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMA 398
           H Y++K G+  D      L+ MY+K G +  A++VF  I +  +  W A+I G  +H   
Sbjct: 281 HGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHH 340

Query: 399 TQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGC 458
            QAL+L  +M R G+ P   T    L AC+  GL   GR+  + ++    +E  +     
Sbjct: 341 EQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMK-MDMESDLFVSVG 399

Query: 459 LVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG 494
           LVD+  +   LE+A+     +P + + + W +++SG
Sbjct: 400 LVDMYSKCDLLEDARMAFNLLPEK-DLIAWNAIISG 434


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 239/662 (36%), Positives = 396/662 (59%), Gaps = 15/662 (2%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +QLH   +K+     + + + L++ Y+      +  AR +FD + +   ++ +N +I  Y
Sbjct: 64  EQLHGFILKSGFGERNSVGNSLVAFYLKNQ--RVDSARKVFDEMTER-DVISWNSIINGY 120

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
           V N  + + L++F  +L   +  D  T+  V  G A    I  G+ +H +  K  F  + 
Sbjct: 121 VSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRED 180

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
              ++L+ MY+K G++D  + VF  M D+ +VS+  +I GY ++G    A+KLF+EM + 
Sbjct: 181 RFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEE 240

Query: 218 ----DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNL-----VSWNAMINGYMKAGDVDS 268
               D+++ T +++  ++   ++  + +   +   +L     VS NA+++ Y K G +  
Sbjct: 241 GISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVS-NALMDMYAKCGSMQE 299

Query: 269 ACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL-PNDATLVSALSAVA 327
           A  +F +M ++D+I+WN++I GY  N    EAL L   +L      P++ T+   L A A
Sbjct: 300 AELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACA 359

Query: 328 GLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTA 387
            L+  +KGR +H YI++NG+  D  +   L+ MY+KCG++  A  +F  I+ K +  WT 
Sbjct: 360 SLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTV 419

Query: 388 MIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDY 447
           MI G GMHG   +A+ LFN+M + G++   I+F+ +L ACSH+GLV++G R+FN+M ++ 
Sbjct: 420 MIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHEC 479

Query: 448 GIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYA 507
            IEPT+EHY C+VD+L RTG L +A   IE+MP+ P+  IW +LL G R H +  + E  
Sbjct: 480 KIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKV 539

Query: 508 ANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHE 567
           A  + ++ P+  G YV+++NIYA A +W++V  +R+ + +RG RK+PG S IE +G ++ 
Sbjct: 540 AEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNI 599

Query: 568 FVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAI 627
           FV GD S+P+T+ I + L ++R ++   G+ P T   L+  E+  EKE  L  HSE+LA+
Sbjct: 600 FVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEM-EKEEALCGHSEKLAM 658

Query: 628 AFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKD 687
           A G+I+      IR+ KNLRVC DCH + K +S +  REI++RD++RFH FK+G CSC+ 
Sbjct: 659 ALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRG 718

Query: 688 FW 689
           FW
Sbjct: 719 FW 720



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 125/432 (28%), Positives = 215/432 (49%), Gaps = 14/432 (3%)

Query: 78  FDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGA 137
           FD +    +L  +N+L+     +     ++ LF  ++   +  D++T  CV K  + L +
Sbjct: 1   FDEVKIEKAL-FWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRS 59

Query: 138 IKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDG 197
           +  G+Q+HG + K GFG    V +SLV+ Y K   +D  R+VFD M ++D++SWN +I+G
Sbjct: 60  VHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIING 119

Query: 198 YVKKGEVEVAMKLFDEM----PDRDLFSWTCLVDGFSKCGKVEIAREI----FYRMPNRN 249
           YV  G  E  + +F +M     + DL +   +  G +    + + R +         +R 
Sbjct: 120 YVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRE 179

Query: 250 LVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLI 309
               N +++ Y K GD+DSA  +F +M  R ++++ SMIAGY   G   EA++L E M  
Sbjct: 180 DRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEE 239

Query: 310 GDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIES 369
             + P+  T+ + L+  A   +L++G+ +H +I +N    D  +   L+ MY+KCGS++ 
Sbjct: 240 EGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQE 299

Query: 370 ALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG-MKPTAITFIGVLNACS 428
           A  VF  +  K +  W  +I G   +  A +AL LFN +       P   T   VL AC+
Sbjct: 300 AELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACA 359

Query: 429 HAGLVNDGRRYFN-MMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVI 487
                + GR     +M N Y  +  + +   LVD+  + G L  A    + +  + + V 
Sbjct: 360 SLSAFDKGREIHGYIMRNGYFSDRHVAN--SLVDMYAKCGALLLAHMLFDDIASK-DLVS 416

Query: 488 WMSLLSGARNHG 499
           W  +++G   HG
Sbjct: 417 WTVMIAGYGMHG 428


>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
          Length = 987

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 263/760 (34%), Positives = 398/760 (52%), Gaps = 109/760 (14%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINN--LHYARSIFDRI-LQHPSLVLYNLLI 94
           + +HA +VK  L+  + + + LL+ Y    ++      AR +FD I     +   +N L+
Sbjct: 229 RAIHAHAVKAGLLVSTYLCNNLLAYYASVGVSRGCFREARCLFDDIPYARRNAFTWNSLL 288

Query: 95  KCYVFNQRSHEALTLFCDLLDR------------------------FL-------LPDNF 123
             Y  + R  +A  +F ++ DR                        FL        P  F
Sbjct: 289 SLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMVSEGFAPSQF 348

Query: 124 TLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAM 183
           TL  V+   A + A   G+++H  V KLG      V +S++ MY K G+ +  R VF+ M
Sbjct: 349 TLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAETARAVFERM 408

Query: 184 D-------------------------------DKDLVSWNCLIDGYVKKGEVEVAMKLFD 212
                                           ++ +VSWN +I GY + G   +A+K F 
Sbjct: 409 QVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQNGLDGMALKFFS 468

Query: 213 EM-------PD--------------------RDLFSW-------------TCLVDGFSKC 232
            M       PD                    + + S+               L+  ++K 
Sbjct: 469 RMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQIMNALISTYAKS 528

Query: 233 GKVEIAREIFYR--MPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAG 290
           G VE AR I  +  + + N++S+ A++ GY+K GD   A E+FD M  RD+I W +MI G
Sbjct: 529 GSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIMNNRDVIAWTAMIVG 588

Query: 291 YELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVD 350
           Y  NG+  EA+EL  +M++    PN  TL + LSA A LA L+ G+ +H   +++     
Sbjct: 589 YHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAYLDYGKQIHCKAIRSLQEQS 648

Query: 351 GVLGTLLIQMYSKCGSIESALTVFRAIS-KKKVGHWTAMIVGLGMHGMATQALDLFNKMC 409
             +   +I +Y++ GS+  A  VF  I  +K+   WT+MIV +  HG+  QA+ LF +M 
Sbjct: 649 VSVSNAIITVYARSGSVPLARRVFDQICWRKETITWTSMIVAMAQHGLGEQAVVLFEEMV 708

Query: 410 RMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYL 469
           R+G+KP  IT++GVL+AC+HAG V+ G+RY+  M N++GI P + HY C+VD+  R G L
Sbjct: 709 RVGVKPDHITYVGVLSACAHAGFVDKGKRYYEQMQNEHGIVPQMSHYACMVDLHARAGLL 768

Query: 470 EEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIY 529
            EA   I+ MP+ P+ V+W SLL+  R   N D+ E AA  L+ + P   G Y  L+N+Y
Sbjct: 769 TEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAGKLLSIDPHNSGAYSALANVY 828

Query: 530 AAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMR 589
           +A G+W+  + + ++ K +G +K+ G S    RG +H F   D  HPQ D I+ K +EM 
Sbjct: 829 SACGRWNDAARIWKLRKDKGVKKETGFSWTHVRGKVHVFGADDVLHPQRDSIYRKAAEMW 888

Query: 590 NKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVC 649
            ++K AG VPD   VL  ++D+  KE  L  HSE+LAIAFGLI+   ++ +RI+KNLRVC
Sbjct: 889 EEIKKAGFVPDLNSVLHDVDDEL-KEELLSRHSEKLAIAFGLISTPEKTTLRIMKNLRVC 947

Query: 650 NDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           NDCH+  K +S   +REIIVRD +RFHHF++G CSCKD+W
Sbjct: 948 NDCHTAIKFISKFVDREIIVRDATRFHHFRDGYCSCKDYW 987



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 132/522 (25%), Positives = 220/522 (42%), Gaps = 122/522 (23%)

Query: 141 GKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLG-----RRVFDAMD--DKDLVSWNC 193
           G+ IH    K G     ++ ++L++ YA  G +  G     R +FD +    ++  +WN 
Sbjct: 228 GRAIHAHAVKAGLLVSTYLCNNLLAYYASVG-VSRGCFREARCLFDDIPYARRNAFTWNS 286

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM------PN 247
           L+  Y K G +  A  +F EMPDRD  SWT ++ G ++ G+   A + F  M      P+
Sbjct: 287 LLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMVSEGFAPS 346

Query: 248 R----NLVS-----------------------------WNAMINGYMKAGDVDSACELFD 274
           +    N++S                              N+++  Y K GD ++A  +F+
Sbjct: 347 QFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAETARAVFE 406

Query: 275 DMEI-------------------------------RDLITWNSMIAGYELNGRFMEALEL 303
            M++                               R +++WN++IAGY  NG    AL+ 
Sbjct: 407 RMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQNGLDGMALKF 466

Query: 304 LETMLIGDVLPNDA-TLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYS 362
              ML    +  DA T+ S LSA A L +L  G+ MHSYI++ G      +   LI  Y+
Sbjct: 467 FSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQIMNALISTYA 526

Query: 363 KCGSIES---------------------------------ALTVFRAISKKKVGHWTAMI 389
           K GS+E+                                 A  +F  ++ + V  WTAMI
Sbjct: 527 KSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIMNNRDVIAWTAMI 586

Query: 390 VGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGI 449
           VG   +G   +A++LF  M  +G +P + T   VL+AC+    ++ G++     I     
Sbjct: 587 VGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAYLDYGKQIHCKAIRSLQ- 645

Query: 450 EPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAA- 508
           E ++     ++ +  R+G +  A+   + +  R   + W S++     HG   +GE A  
Sbjct: 646 EQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETITWTSMIVAMAQHG---LGEQAVV 702

Query: 509 --NNLIKVA--PDTIGCYVVLSNIYAAAGQWDKVSEVREMMK 546
               +++V   PD I  YV + +  A AG  DK     E M+
Sbjct: 703 LFEEMVRVGVKPDHI-TYVGVLSACAHAGFVDKGKRYYEQMQ 743


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 249/686 (36%), Positives = 389/686 (56%), Gaps = 76/686 (11%)

Query: 78  FDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGA 137
           FD++ Q  S V +  +I  Y    + H+A+ +  D++   + P  FTL  V+   A    
Sbjct: 103 FDQLPQRDS-VSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRC 161

Query: 138 IKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAK---------------------------- 169
           ++ GK++H  + KLG   +  V +SL++MYAK                            
Sbjct: 162 METGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIAL 221

Query: 170 ---FGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM-------PDRDL 219
               G++DL    F+ M ++D+V+WN +I G+ ++G    A+ +F +M       PDR  
Sbjct: 222 HMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFT 281

Query: 220 FS---------------------------------WTCLVDGFSKCGKVEIAREIFYRMP 246
            +                                    L+  +S+CG VE AR +  +  
Sbjct: 282 LASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRG 341

Query: 247 NRNLV--SWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELL 304
            ++L    + A+++GY+K GD++ A  +F  ++ RD++ W +MI GYE +G + EA+ L 
Sbjct: 342 TKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLF 401

Query: 305 ETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKC 364
            +M+ G   PN  TL + LS  + LA L+ G+ +H   VK+G +    +   LI MY+K 
Sbjct: 402 RSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKA 461

Query: 365 GSIESALTVFRAIS-KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGV 423
           G+I SA   F  I  ++    WT+MI+ L  HG A +AL+LF  M   G++P  IT++GV
Sbjct: 462 GNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGV 521

Query: 424 LNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRP 483
            +AC+HAGLVN GR+YF+MM +   I PT+ HY C+VD+  R G L+EA+  IE MP+ P
Sbjct: 522 FSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEP 581

Query: 484 NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVRE 543
           + V W SLLS  R H N D+G+ AA  L+ + P+  G Y  L+N+Y+A G+W++ +++R+
Sbjct: 582 DVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRK 641

Query: 544 MMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQ 603
            MK    +K+ G S IE +  +H F V D +HP+ +EI+  + ++ +++K  G+VPDT  
Sbjct: 642 SMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTAS 701

Query: 604 VLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIY 663
           VL  +E++  KE  L +HSE+LAIAFGLI+   ++ +RI+KNLRVCNDCH+  K +S + 
Sbjct: 702 VLHDLEEEV-KEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLV 760

Query: 664 NREIIVRDNSRFHHFKNGSCSCKDFW 689
            REIIVRD +RFHHFK+G CSC+D+W
Sbjct: 761 GREIIVRDTTRFHHFKDGFCSCRDYW 786



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 135/543 (24%), Positives = 221/543 (40%), Gaps = 142/543 (26%)

Query: 144 IHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGE 203
           +H  V K G  F  +++++L+++Y+K G     R++FD M  +   SWN ++  Y K+G+
Sbjct: 36  VHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGD 95

Query: 204 VEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM------PNR--------- 248
           ++   + FD++P RD  SWT ++ G+   G+   A  +   M      P +         
Sbjct: 96  MDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLAS 155

Query: 249 ------------------------NLVSWNAMINGYMKAGD------------------- 265
                                   N+   N+++N Y K GD                   
Sbjct: 156 VAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSW 215

Query: 266 ------------VDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL 313
                       +D A   F+ M  RD++TWNSMI+G+   G  + AL++   ML   +L
Sbjct: 216 NAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLL 275

Query: 314 -PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESAL- 371
            P+  TL S LSA A L  L  G+ +HS+IV  GF + G++   LI MYS+CG +E+A  
Sbjct: 276 SPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARR 335

Query: 372 --------------------------------TVFRAISKKKVGHWTAMIVGLGMHGMAT 399
                                            +F ++  + V  WTAMIVG   HG   
Sbjct: 336 LIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYG 395

Query: 400 QALDLFNKMCRMGMKPTAITFIGVLNACS-----------HAGLVNDGRRY----FNMMI 444
           +A++LF  M   G +P + T   +L+  S           H   V  G  Y     N +I
Sbjct: 396 EAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALI 455

Query: 445 NDYGIEPTIE----------------HYGCLVDILCRTGYLEEAKSTIESMPM---RPNF 485
             Y     I                  +  ++  L + G+ EEA    E+M M   RP+ 
Sbjct: 456 TMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDH 515

Query: 486 VIWMSLLSGARNHGNKDIGEY---AANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVR 542
           + ++ + S   + G  + G        ++ K+ P T+  Y  + +++  AG   +  E  
Sbjct: 516 ITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIP-TLSHYACMVDLFGRAGLLQEAQEFI 574

Query: 543 EMM 545
           E M
Sbjct: 575 EKM 577



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 95/221 (42%), Gaps = 19/221 (8%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +Q+H  +VK+  IY   +S+ L+++Y      N+  A   FD I      V +  +I   
Sbjct: 433 KQIHGSAVKSGEIYSVSVSNALITMYAKA--GNITSASRAFDLIRCERDTVSWTSMIIAL 490

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
             +  + EAL LF  +L   L PD+ T   V       G + +G+Q     F +    DK
Sbjct: 491 AQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQ----YFDMMKDVDK 546

Query: 158 FV-----LSSLVSMYAKFGEIDLGRRVFDAMD-DKDLVSWN-----CLIDGYVKKGEVEV 206
            +      + +V ++ + G +   +   + M  + D+V+W      C +   +  G+V  
Sbjct: 547 IIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAA 606

Query: 207 AMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPN 247
              L  E  +   +S   L + +S CGK E A +I   M +
Sbjct: 607 ERLLLLEPENSGAYS--ALANLYSACGKWEEAAKIRKSMKD 645


>gi|413934850|gb|AFW69401.1| hypothetical protein ZEAMMB73_719952 [Zea mays]
          Length = 742

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 268/735 (36%), Positives = 395/735 (53%), Gaps = 85/735 (11%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVD--PHINNLHYARSIFDRILQHPSLVLYNL 92
           ++  QLHAL   +  I H   +  LLS   +      +L Y  S+FDR+    + +    
Sbjct: 13  RQASQLHALLTTSGRIAHRPSAEHLLSSLTNTISAPRHLRYVLSLFDRLPHSTTFLFDTA 72

Query: 93  LIKCYVFNQRS-HEALTL-------------------------------FCDLLD----R 116
           L  C   +  + H  L L                                C +L     R
Sbjct: 73  LRACLQASAGADHPVLLLRRMRSGGVRTGAFTFHFVFRCCAAGARARAGLCLMLHAACLR 132

Query: 117 FLLPDNFTLPC--VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEID 174
            +LP    L    +I   A +G   + ++     F      D  V ++++    ++G +D
Sbjct: 133 TMLPSAAPLVANPLIHMYASMGLTDDARR----AFDEIPAKDAVVWATVIGGLVRWGLLD 188

Query: 175 LGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PD------------ 216
             RR+     ++++VSW  LI GY + G    A+  F+ M      PD            
Sbjct: 189 EARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPDEVAVIGALSACS 248

Query: 217 ----------------RDLFSWT-----CLVDGFSKCGKVEIAREIFYRM-PNRNLVSWN 254
                           +     T      L+D ++KCG +  A+ +F  +   +    WN
Sbjct: 249 KLKNLDLGRLLHLLVGQKRIRMTDNLVVALIDMYAKCGDIAQAQAVFDAVGRGQKPEPWN 308

Query: 255 AMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLP 314
           A+I+GY K G VD A  LFD M  RD+IT+NSMI GY  +GR  +AL+L   M    +  
Sbjct: 309 AIIDGYCKLGHVDVARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQMRRHGMRA 368

Query: 315 NDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVF 374
           ++ T+VS L+A A L  L  GR +H+ I +     D  LGT L+ MY KCG ++ A  VF
Sbjct: 369 DNFTVVSLLTACASLGALPHGRALHASIEQRIVEEDVYLGTALLDMYMKCGRVDEATAVF 428

Query: 375 RAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVN 434
             + ++ V  WTAMI GL  +GM   AL+ F +M R G +PT++T+I VL ACSH+ L++
Sbjct: 429 HRMGERDVHTWTAMIAGLAFNGMGKDALESFCQMKRDGFQPTSVTYIAVLTACSHSSLLD 488

Query: 435 DGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG 494
           +GR +FN M + + + P +EHYGC++D+L R+G L+EA   +++MPM+PN VIW S+LS 
Sbjct: 489 EGRLHFNEMRSLHKLHPQVEHYGCMIDLLARSGLLDEAMHLVQTMPMQPNAVIWGSILSA 548

Query: 495 ARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDP 554
            R H N D+  +AA +L+K+AP+    YV L NIY  + QW     VR +M++RG +K  
Sbjct: 549 CRVHKNIDLARHAAEHLLKLAPEEDAVYVQLYNIYIDSRQWADAKRVRMLMEERGVKKTA 608

Query: 555 GSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEK 614
           G SSI   G +H+FV  D+SHP T EI + + E+  +LK+ G+ P T+++ + + D++EK
Sbjct: 609 GYSSITVAGQVHKFVANDQSHPWTLEIMAMMEEIACRLKSVGYSPVTSRIAVDV-DEEEK 667

Query: 615 EAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSR 674
           E  L  HSE++AIAFGLI++    PI IVKNLRVC DCHS  KL+S ++NREIIVRD SR
Sbjct: 668 EQALLAHSEKIAIAFGLISLPPSLPIHIVKNLRVCEDCHSAIKLVSQLWNREIIVRDRSR 727

Query: 675 FHHFKNGSCSCKDFW 689
           FHHF++G+CSC DFW
Sbjct: 728 FHHFRDGACSCNDFW 742


>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 252/695 (36%), Positives = 385/695 (55%), Gaps = 61/695 (8%)

Query: 55  ISSRLLSLYVDP-----HINNLHYARS-IFDRILQHPSLVLYNLLIKCYVFNQRSHEALT 108
           IS    +L+V P       N+L Y    IF R      LV  NL   C         + T
Sbjct: 4   ISKTTPNLWVSPPHQIHRENSLTYPNGFIFFRPSSKTPLVSSNLYHSCATIGTSVLPSET 63

Query: 109 LFCDLLD------RFLLPDNF------------------TLPCVIKGAARLGAIKEGKQI 144
           + C + D      RF    N                   T   V++  A L +I++G++I
Sbjct: 64  IDCKITDYNIEICRFCELGNLRRAMELINQSPKPDLELRTYCSVLQLCADLKSIQDGRRI 123

Query: 145 HGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKG-- 202
           H ++       D  + S LV MY   G++  GRR+FD + ++ +  WN L++GY K G  
Sbjct: 124 HSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNF 183

Query: 203 ----------------EVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM- 245
                            VE A KLFDE+ DRD+ SW  ++ G+   G  E   ++F +M 
Sbjct: 184 RESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQML 243

Query: 246 ---PNRNLVSW--------NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELN 294
               N +L +         N +++ Y K+G+++SA ++F+ M  R +++W SMIAGY   
Sbjct: 244 LLGINTDLATMVSVELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYARE 303

Query: 295 GRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLG 354
           G    ++ L   M   D+ PN  T+   L A A LA L +G+ +H +I++NGF +D  + 
Sbjct: 304 GLSDMSVRLFHEMEKEDLFPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVA 363

Query: 355 TLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMK 414
             L+ MY KCG++  A  +F  I +K +  WT MI G GMHG  ++A+  FN+M   G++
Sbjct: 364 NALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIE 423

Query: 415 PTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKS 474
           P  ++FI +L ACSH+GL+++G  +FNMM N+  IEP  EHY C+VD+L R G L +A  
Sbjct: 424 PDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYK 483

Query: 475 TIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQ 534
            I+ MP+ P+  IW +LL G R + +  + E  A ++ ++ P+  G YV+L+NIYA A +
Sbjct: 484 FIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEK 543

Query: 535 WDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKA 594
           W++V ++RE + +RG RK+PG S IE +G +H FV GD SHP  ++I   L + R ++K 
Sbjct: 544 WEEVKKLRERIGRRGLRKNPGCSWIEIKGKVHIFVTGDSSHPLANKIELLLKKTRTRMKE 603

Query: 595 AGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHS 654
            GH P     L+  +D  EKE  L  HSE++A+AFG++++     +R+ KNLRVC DCH 
Sbjct: 604 EGHFPKMRYALIKADDT-EKEMALCGHSEKIAMAFGILSLPPGKTVRVTKNLRVCGDCHE 662

Query: 655 VTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           + K +S +  R+II+RD++RFHHFK+GSCSC+  W
Sbjct: 663 MAKFMSKMVKRDIILRDSNRFHHFKDGSCSCRGHW 697



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 130/265 (49%), Gaps = 13/265 (4%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHIN--NLHYARSIFDRILQHPSLVLYNLLIK 95
           +Q+  L + T+L     +   L +  +D +    NL+ A  +F+ + +  S+V +  +I 
Sbjct: 240 EQMLLLGINTDLATMVSVELTLNNCLLDMYSKSGNLNSAIQVFETMGER-SVVSWTSMIA 298

Query: 96  CYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF 155
            Y     S  ++ LF ++    L P++ T+ C++   A L A++ G++IHG + + GF  
Sbjct: 299 GYAREGLSDMSVRLFHEMEKEDLFPNSITMACILPACASLAALERGQEIHGHILRNGFSL 358

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP 215
           D+ V ++LV MY K G + L R +FD + +KDLVSW  +I GY   G    A+  F+EM 
Sbjct: 359 DRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMR 418

Query: 216 DR----DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS-----WNAMINGYMKAGDV 266
           +     D  S+  ++   S  G ++     F  M N   +      +  +++   +AG++
Sbjct: 419 NSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNL 478

Query: 267 DSACELFDDMEIR-DLITWNSMIAG 290
             A +    M I  D   W +++ G
Sbjct: 479 SKAYKFIKMMPIEPDATIWGALLCG 503


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 250/663 (37%), Positives = 382/663 (57%), Gaps = 36/663 (5%)

Query: 59  LLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFL 118
           L+++Y    +  L  A+S+   + +   LV +N +I  +  N+R  EAL     ++   +
Sbjct: 156 LMAMYA--KLGRLDDAKSLL-VLFEDRDLVTWNSMISSFSQNERFMEALMFLRLMVLEGV 212

Query: 119 LPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFD-KFVLSSLVSMYAKFGEIDLGR 177
            PD  T   V+   + L  ++ GK+IH    +     +  FV S+LV MY   G+++ GR
Sbjct: 213 KPDGVTFASVLPACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQVESGR 272

Query: 178 RVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD-----RDLFSWTCLVDGFSKC 232
            VFD++ D+ +  WN +I GY +    E A+ LF EM        +  + + +V  + +C
Sbjct: 273 LVFDSVLDRKIGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRC 332

Query: 233 GKVEIAREIFYRMPNRNLVS----WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMI 288
             +     I   +  R L +     NA+I+ Y + GD+ ++  +FD ME RD+++WN++I
Sbjct: 333 EGISRKEGIHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTII 392

Query: 289 AGYELNGRFMEALELLETM--------LIGD--------VLPNDATLVSALSAVAGLAVL 332
             Y + GR  +AL LL  M          GD          PN  TL++ L   A L+ L
Sbjct: 393 TSYVICGRSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSAL 452

Query: 333 NKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGL 392
            KG+ +H+Y ++N       +G+ L+ MY+KCG +  A  VF  +  + V  W  +I+  
Sbjct: 453 AKGKEIHAYAIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIRNVITWNVIIMAY 512

Query: 393 GMHGMATQALDLFNKMCRMG-----MKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDY 447
           GMHG   ++L+LF  M   G     +KPT +TFI +  +CSH+G+V++G   F+ M N++
Sbjct: 513 GMHGKGKESLELFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDEGLSLFHKMKNEH 572

Query: 448 GIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFV-IWMSLLSGARNHGNKDIGEY 506
           GIEP  +HY C+VD++ R G +EEA   + +MP   + V  W SLL   R + N +IGE 
Sbjct: 573 GIEPAPDHYACIVDLVGRAGKVEEAYGLVNTMPSGFDKVGAWSSLLGACRIYHNIEIGEI 632

Query: 507 AANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLH 566
           AA NL+++ PD    YV+LSNIY++AG WDK   +R  MK  G +K+PG S IE+   +H
Sbjct: 633 AAENLLQLQPDVASHYVLLSNIYSSAGLWDKAMNLRRRMKAMGVKKEPGCSWIEYGDEVH 692

Query: 567 EFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLA 626
           +F+ GD SHPQ++++H  L  +  +LK  G+VPDT  VL  I D++EKE  L  HSE+LA
Sbjct: 693 KFLAGDLSHPQSEKLHDFLETLSERLKKEGYVPDTACVLHDI-DEEEKETILCGHSEKLA 751

Query: 627 IAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCK 686
           IAFG++N    + IR+ KNLRVCNDCH+ +K +S I +REII+RD  RFHHFK+G+CSC 
Sbjct: 752 IAFGILNTPPGTTIRVAKNLRVCNDCHTASKFISKIEDREIILRDARRFHHFKDGTCSCG 811

Query: 687 DFW 689
           D+W
Sbjct: 812 DYW 814



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 125/388 (32%), Positives = 193/388 (49%), Gaps = 16/388 (4%)

Query: 120 PDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG-FDKFVL-SSLVSMYAKFGEIDLGR 177
           PDNF  P V+K  A +  +  GKQIH  VFK G+G F    + ++LV+MY K G +    
Sbjct: 8   PDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLGDAY 67

Query: 178 RVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFD-------EMPDRDLFSWTCLVDGFS 230
           +VFD + ++D VSWN +I    +  E EVA+K F        E     L S         
Sbjct: 68  KVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACSNLR 127

Query: 231 KCGKVEIAREIF---YRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSM 287
           K   + + ++I    +R  +    S NA++  Y K G +D A  L    E RDL+TWNSM
Sbjct: 128 KRDGLWLGKQIHGCCFRKGHWRTFSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSM 187

Query: 288 IAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGF 347
           I+ +  N RFMEAL  L  M++  V P+  T  S L A + L +L  G+ +H+Y ++   
Sbjct: 188 ISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTDD 247

Query: 348 VVD-GVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFN 406
           V++   +G+ L+ MY  CG +ES   VF ++  +K+G W AMI G        +AL LF 
Sbjct: 248 VIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALMLFI 307

Query: 407 KM-CRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCR 465
           +M    G+   A T   ++ A      ++        +I   G+E        L+D+  R
Sbjct: 308 EMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVIK-RGLETNRYLQNALIDMYSR 366

Query: 466 TGYLEEAKSTIESMPMRPNFVIWMSLLS 493
            G ++ +K   +SM  R + V W ++++
Sbjct: 367 MGDIKTSKRIFDSMEDR-DIVSWNTIIT 393


>gi|224116778|ref|XP_002331875.1| predicted protein [Populus trichocarpa]
 gi|222875393|gb|EEF12524.1| predicted protein [Populus trichocarpa]
          Length = 675

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 258/670 (38%), Positives = 378/670 (56%), Gaps = 63/670 (9%)

Query: 67  HINN--LHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFT 124
           H+ N  L  AR IFD+I   P+L LY  +I  Y  N R  +AL LF    DR  + D  +
Sbjct: 22  HLKNQRLDQARLIFDKI-PSPNLHLYTKMIAGYTRNDRLCDALKLF----DRMSVRDVVS 76

Query: 125 LPCVIKGAARLGAIKEGKQIHGLVFKLGFGFD----KFVLS--SLVSMYAKFGEIDLGRR 178
              +IKG    G +       G+  +L   FD    K V+S  ++V+ Y KFG ++L +R
Sbjct: 77  WNSMIKGCLDCGNL-------GMATRL---FDEMPEKNVISWTTMVNGYLKFGRVELAQR 126

Query: 179 VFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIA 238
           +F  M  KD+ +WN ++ GY + G VE  ++LF+EMP RD+ SWT ++ G    GK E A
Sbjct: 127 LFLDMHVKDVAAWNAMVHGYFENGRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEA 186

Query: 239 REIFYRM------PN-----------RNLVSWN----------------------AMING 259
             +F +M      P             N V +N                      ++I  
Sbjct: 187 LFVFKKMLRSGVEPTWSTFACVLSACANAVEFNLGVQVHGHVVKLGCFFHEFISVSLITF 246

Query: 260 YMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATL 319
           Y     ++ A ++F++   ++++ W +++  Y  N +  +AL +   M     LPN +T 
Sbjct: 247 YANCMKIEHAHKIFNETLTKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGALPNQSTF 306

Query: 320 VSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK 379
              L A  GL  L+KG+ +H+  +K G   D  +G  L+ MY++CG++ SA+ VFR I++
Sbjct: 307 SITLKACCGLEALDKGKEIHTMAIKLGLETDVFVGNSLVVMYTECGNVNSAVAVFRNINE 366

Query: 380 KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRY 439
           K +  W ++IVG   HG    AL  FN+M R G+ P  ITF G+L+ACS +G++  GR +
Sbjct: 367 KDIVSWNSIIVGSAQHGFGLWALIFFNQMIRRGVDPNEITFTGLLSACSRSGMLLKGRCF 426

Query: 440 FNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
           F  +          +HY C+VDIL R G L+EA+  +  MP++ N +IW++LLS  R H 
Sbjct: 427 FEYISRYKSNVLRPQHYACMVDILGRCGKLDEAEELVRYMPVKANSMIWLALLSACRVHS 486

Query: 500 NKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSI 559
           N ++ E AA +++ + P+    YV+LSNIYA+AG+W  VS +R  MK+ G  K PGSS +
Sbjct: 487 NLEVAERAAKHILDLEPNCSSAYVLLSNIYASAGRWADVSRMRVKMKQGGLVKQPGSSWV 546

Query: 560 EHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELE 619
             RG  HEF+  D+SHP ++ I+ KL  +  KLK  G+VPD    L  +ED+ +KE  L 
Sbjct: 547 VLRGKKHEFLSADRSHPLSERIYEKLDWLGKKLKEFGYVPDQKFALHDVEDE-QKEEMLS 605

Query: 620 NHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFK 679
            HSERLAIAFGL++    S I ++KNLRVC DCHSV KL+S I  R+I+VRD+ RFHHFK
Sbjct: 606 FHSERLAIAFGLVSTVEGSTITVMKNLRVCGDCHSVIKLMSKIVGRKIVVRDSGRFHHFK 665

Query: 680 NGSCSCKDFW 689
           NG CSC D+W
Sbjct: 666 NGICSCSDYW 675



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 98/373 (26%), Positives = 159/373 (42%), Gaps = 64/373 (17%)

Query: 189 VSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR 248
           +S+   +  ++K   ++ A  +FD++P  +L  +T ++ G+++  ++  A ++F RM  R
Sbjct: 13  LSYTTSLANHLKNQRLDQARLIFDKIPSPNLHLYTKMIAGYTRNDRLCDALKLFDRMSVR 72

Query: 249 NLVSWNAMI-------------------------------NGYMKAGDVDSACELFDDME 277
           ++VSWN+MI                               NGY+K G V+ A  LF DM 
Sbjct: 73  DVVSWNSMIKGCLDCGNLGMATRLFDEMPEKNVISWTTMVNGYLKFGRVELAQRLFLDMH 132

Query: 278 IRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL------------------------ 313
           ++D+  WN+M+ GY  NGR  E + L E M + DV+                        
Sbjct: 133 VKDVAAWNAMVHGYFENGRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFKK 192

Query: 314 -------PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGS 366
                  P  +T    LSA A     N G  +H ++VK G      +   LI  Y+ C  
Sbjct: 193 MLRSGVEPTWSTFACVLSACANAVEFNLGVQVHGHVVKLGCFFHEFISVSLITFYANCMK 252

Query: 367 IESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNA 426
           IE A  +F     K V  WTA++     +     AL +F  M +MG  P   TF   L A
Sbjct: 253 IEHAHKIFNETLTKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGALPNQSTFSITLKA 312

Query: 427 CSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFV 486
           C     ++ G+    M I   G+E  +     LV +    G +  A +   ++  + + V
Sbjct: 313 CCGLEALDKGKEIHTMAIK-LGLETDVFVGNSLVVMYTECGNVNSAVAVFRNINEK-DIV 370

Query: 487 IWMSLLSGARNHG 499
            W S++ G+  HG
Sbjct: 371 SWNSIIVGSAQHG 383



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 148/311 (47%), Gaps = 23/311 (7%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYV 98
           Q+H   VK    +H  IS  L++ Y +     + +A  IF+  L   ++V +  L+  YV
Sbjct: 223 QVHGHVVKLGCFFHEFISVSLITFYAN--CMKIEHAHKIFNETLT-KNVVKWTALLTAYV 279

Query: 99  FNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKF 158
           +N +  +AL +F D+     LP+  T    +K    L A+ +GK+IH +  KLG   D F
Sbjct: 280 WNNKHQDALRVFGDMTKMGALPNQSTFSITLKACCGLEALDKGKEIHTMAIKLGLETDVF 339

Query: 159 VLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRD 218
           V +SLV MY + G ++    VF  +++KD+VSWN +I G  + G    A+  F++M  R 
Sbjct: 340 VGNSLVVMYTECGNVNSAVAVFRNINEKDIVSWNSIIVGSAQHGFGLWALIFFNQMIRRG 399

Query: 219 L----FSWTCLVDGFSKCGKVEIAREIF-----YRMPNRNLVSWNAMINGYMKAGDVDSA 269
           +     ++T L+   S+ G +   R  F     Y+        +  M++   + G +D A
Sbjct: 400 VDPNEITFTGLLSACSRSGMLLKGRCFFEYISRYKSNVLRPQHYACMVDILGRCGKLDEA 459

Query: 270 CELFDDMEIRDLITWNSMIAGYELNG-RFMEALELLETML--IGDVLPNDATLVSALSAV 326
            EL   M ++     NSMI    L+  R    LE+ E     I D+ PN ++    LS +
Sbjct: 460 EELVRYMPVKA----NSMIWLALLSACRVHSNLEVAERAAKHILDLEPNCSSAYVLLSNI 515

Query: 327 AGLAVLNKGRW 337
              A    GRW
Sbjct: 516 YASA----GRW 522


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 249/670 (37%), Positives = 376/670 (56%), Gaps = 18/670 (2%)

Query: 31  SSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLY 90
           S   K+ Q +H+L +K     +  I   L+ +Y    +     A  +F + ++ P +V++
Sbjct: 327 SKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGL--AIDAIGVF-KTIKKPDIVVW 383

Query: 91  NLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFK 150
           + LI C     +S E++ LF  +     LP+ +T+  ++  A   G ++ G+ IH  V+K
Sbjct: 384 SALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWK 443

Query: 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
            GF  D  V ++LV+MY K G +  G +++++M D+DL+SWN  + G    G  +  + +
Sbjct: 444 YGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTI 503

Query: 211 FDEM------PDRDLF-----SWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMING 259
           F  M      P+   F     S +CL D     G+   A  I  ++ + N V   A+I+ 
Sbjct: 504 FYHMLEEGFIPNMYTFISILGSCSCLFD--VHYGRQVHAHIIKNQLDDNNFVC-TALIDM 560

Query: 260 YMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATL 319
           Y K   ++ A   F+ + +RDL TW  +I  Y    +  +AL     M    V PN+ TL
Sbjct: 561 YAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTL 620

Query: 320 VSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK 379
              LS  + LA L  G+ +HS + K+G V D  +G+ L+ MY+KCG +E A  +F A+ +
Sbjct: 621 AGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIR 680

Query: 380 KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRY 439
           +    W  +I G   +G   +AL  F  M   G+ P  +TF G+L+ACSH GLV +G+ +
Sbjct: 681 RDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEH 740

Query: 440 FNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
           FN M  D+GI PT++H  C+VDIL R G  +E +  I+ M +  N +IW ++L  ++ H 
Sbjct: 741 FNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGASKMHN 800

Query: 500 NKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSI 559
           N  +GE AAN L ++ P+    Y++LSNI+A  G+WD V  VR +M  +G +K+PG S +
Sbjct: 801 NLVLGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKKEPGCSWV 860

Query: 560 EHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELE 619
           E  G +H FV  D SHPQ  EIH KL E+  +L +  +VP T  VL  + + ++KE  L 
Sbjct: 861 EANGQVHTFVSHDYSHPQIQEIHLKLDELDRELASIQYVPKTEYVLHNVGETEKKE-NLR 919

Query: 620 NHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFK 679
            HSERLA+ F LI+  S   IRI KNLR+C DCH V K +S I N+EI+VRD  RFHHFK
Sbjct: 920 FHSERLALGFALISTSSEKKIRIFKNLRICRDCHDVMKHISSITNQEIVVRDVRRFHHFK 979

Query: 680 NGSCSCKDFW 689
           NG+CSC DFW
Sbjct: 980 NGACSCNDFW 989



 Score =  196 bits (497), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 147/537 (27%), Positives = 259/537 (48%), Gaps = 26/537 (4%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +Q+HA + K  L+    + S L+ LY       +  A  +F  + +    V +N+L+  Y
Sbjct: 233 KQMHAQAFKLGLLLDLFVGSALVDLYAK--CGEIELASKMFIGMPEQND-VTWNVLLNGY 289

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
                    L LFC +++  +  + FTL  V+KG A    +K+G+ IH L+ K G+  ++
Sbjct: 290 AQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNE 349

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLF------ 211
           F+   LV MY+K G       VF  +   D+V W+ LI    ++G+ E ++KLF      
Sbjct: 350 FIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLG 409

Query: 212 DEMPDRDLFSWTCLVDGFSKCGKVEIAREIF-----YRMPNRNLVSWNAMINGYMKAGDV 266
           D +P++  ++   L+   +  G ++  + I      Y       VS NA++  YMK G V
Sbjct: 410 DTLPNQ--YTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVS-NALVTMYMKNGCV 466

Query: 267 DSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326
               +L++ M  RDLI+WN+ ++G    G +   L +   ML    +PN  T +S L + 
Sbjct: 467 HDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSC 526

Query: 327 AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWT 386
           + L  ++ GR +H++I+KN    +  + T LI MY+KC  +E A   F  +S + +  WT
Sbjct: 527 SCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWT 586

Query: 387 AMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIND 446
            +I          +AL+ F +M + G+KP   T  G L+ CS    +  G++  +M+   
Sbjct: 587 VIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKS 646

Query: 447 YGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG-ARN-HGNKDIG 504
             +         LVD+  + G +EEA++  E++ +R + + W +++ G A+N  GNK + 
Sbjct: 647 GHVSDMFVG-SALVDMYAKCGCMEEAEALFEAL-IRRDTIAWNTIICGYAQNGQGNKALT 704

Query: 505 EYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEH 561
            +       ++PD     V  + I +A      V E +E      +R    S +++H
Sbjct: 705 AFRMMLDEGISPDG----VTFTGILSACSHQGLVEEGKEHFNSM-YRDFGISPTVDH 756



 Score =  189 bits (480), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 137/484 (28%), Positives = 242/484 (50%), Gaps = 22/484 (4%)

Query: 37  TQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKC 96
            + +H L VK  +   S +   L+++Y     +   YAR +  + +    +V +  LI+ 
Sbjct: 131 AKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSA--YARLVLAK-MPDRDVVSWTALIQG 187

Query: 97  YVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFD 156
            V    +++++ LF ++ +  ++P+ FTL   +K  +   A+  GKQ+H   FKLG   D
Sbjct: 188 LVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLD 247

Query: 157 KFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD 216
            FV S+LV +YAK GEI+L  ++F  M +++ V+WN L++GY ++G+V   +KLF  M +
Sbjct: 248 LFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMME 307

Query: 217 RDL----FSWTCLVDGFS-----KCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVD 267
            D+    F+ T ++ G +     K G+V I   I       N      +++ Y K G   
Sbjct: 308 LDVKCNEFTLTTVLKGCANSKNLKQGQV-IHSLIIKCGYEGNEFIGCGLVDMYSKCGLAI 366

Query: 268 SACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVA 327
            A  +F  ++  D++ W+++I   +  G+  E+++L   M +GD LPN  T+ S LSA  
Sbjct: 367 DAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAAT 426

Query: 328 GLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTA 387
               L  G+ +H+ + K GF  D  +   L+ MY K G +     ++ ++  + +  W A
Sbjct: 427 NTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNA 486

Query: 388 MIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDY 447
            + GL   GM  + L +F  M   G  P   TFI +L +CS    V+ GR+    +I + 
Sbjct: 487 YLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKN- 545

Query: 448 GIEPTIEHYGC--LVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGE 505
             +    ++ C  L+D+  +  YLE+A      + +R  F  W  +++   N+   + GE
Sbjct: 546 --QLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFT-WTVIIT---NYAQTNQGE 599

Query: 506 YAAN 509
            A N
Sbjct: 600 KALN 603



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 79/182 (43%), Gaps = 6/182 (3%)

Query: 321 SALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKK 380
           S L   A    L   + +H  IVK+    D  L   L+ +Y+KC     A  V   +  +
Sbjct: 117 SMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDR 176

Query: 381 KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYF 440
            V  WTA+I GL   G A  ++ LF +M   G+ P   T    L ACS    ++ G++  
Sbjct: 177 DVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQ-- 234

Query: 441 NMMINDYGIEPTIEHY--GCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNH 498
            M    + +   ++ +    LVD+  + G +E A      MP   N V W  LL+G    
Sbjct: 235 -MHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMP-EQNDVTWNVLLNGYAQR 292

Query: 499 GN 500
           G+
Sbjct: 293 GD 294


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 258/727 (35%), Positives = 391/727 (53%), Gaps = 55/727 (7%)

Query: 4   QTLQHSSPIHALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLY 63
           +TL H  P + L   L +         +  H   +++       NL  ++ + S L    
Sbjct: 33  RTLPHPPPTYLLNHLLTA------YGKAGRHARARRVFDAMPHPNLFTYNALLSTL---- 82

Query: 64  VDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL--DRFLLPD 121
              H   L    ++F  + Q   +V YN +I  +       +A+ ++  LL  D  + P 
Sbjct: 83  --AHARLLSDMEALFASMTQR-DIVSYNAVIAGFSGGGSHAQAVRVYLALLQADSSVRPS 139

Query: 122 NFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFD 181
             T+  ++  A+ LG    GKQ H  + +LGFG + FV S LV MYAK   +   +R FD
Sbjct: 140 RITMSTMVMAASALGDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFD 199

Query: 182 AMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREI 241
            +D K++V +N +I G ++   VE A +LF+ M DRD  +WT +V GF++ G    A EI
Sbjct: 200 EVDSKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEI 259

Query: 242 FYRMP---------------------------------------NRNLVSWNAMINGYMK 262
           F RM                                        + N+   +A+++ Y K
Sbjct: 260 FRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSK 319

Query: 263 AGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSA 322
              +  A  +F  M  +++I+W ++I GY  NG   EA+ +   M    + P+D TL S 
Sbjct: 320 CRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSV 379

Query: 323 LSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKV 382
           +S+ A LA L +G   H   + +G +    +   L+ +Y KCGSIE A  +F  +S    
Sbjct: 380 ISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQ 439

Query: 383 GHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNM 442
             WTA++ G    G A + +DLF KM   G+KP  +TFIGVL+ACS AG V  GR YF+ 
Sbjct: 440 VSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHS 499

Query: 443 MINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKD 502
           M  D+GI P  +HY C++D+  R+G L+EA+  I+ MPM P+ + W +LLS  R  G+ +
Sbjct: 500 MQKDHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDME 559

Query: 503 IGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHR 562
           IG++AA NL+++ P     YV+L +++AA GQW++V+++R  M+ R  +K+PG S I+++
Sbjct: 560 IGKWAAENLLEIDPQNPASYVLLCSMHAAKGQWNEVAQLRRGMRDRQVKKEPGCSWIKYK 619

Query: 563 GVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHS 622
             +H F   D+SHP +  I+ KL  + +K+   G+ PD + VL  + D  +K   + +HS
Sbjct: 620 NKVHIFSADDQSHPCSKGIYEKLEWLNSKMLEEGYKPDVSSVLHDVAD-TDKVHMVSHHS 678

Query: 623 ERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGS 682
           E+LAIAFGLI V    PIRIVKNLRVC DCH+ TK +S I  R+I+VRD  RFH F +G 
Sbjct: 679 EKLAIAFGLIFVPQEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSDGV 738

Query: 683 CSCKDFW 689
           CSC DFW
Sbjct: 739 CSCGDFW 745


>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Glycine max]
          Length = 622

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 213/475 (44%), Positives = 311/475 (65%), Gaps = 2/475 (0%)

Query: 216 DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDD 275
           ++D +    LV  ++  G +  AR +F RM   ++VSW  MI GY + GD  SA ELFD 
Sbjct: 149 EQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAGYHRCGDAKSARELFDR 208

Query: 276 MEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKG 335
           M  R+L+TW++MI+GY  N  F +A+E  E +    V+ N+  +V  +S+ A L  L  G
Sbjct: 209 MPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMVGVISSCAHLGALAMG 268

Query: 336 RWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMH 395
              H Y+++N   ++ +LGT ++ MY++CG++E A+ VF  + +K V  WTA+I GL MH
Sbjct: 269 EKAHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKDVLCWTALIAGLAMH 328

Query: 396 GMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEH 455
           G A +AL  F++M + G  P  ITF  VL ACSHAG+V  G   F  M  D+G+EP +EH
Sbjct: 329 GYAEKALWYFSEMAKKGFVPRDITFTAVLTACSHAGMVERGLEIFESMKRDHGVEPRLEH 388

Query: 456 YGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVA 515
           YGC+VD+L R G L +A+  +  MP++PN  IW +LL   R H N ++GE     L+++ 
Sbjct: 389 YGCMVDLLGRAGKLRKAEKFVLKMPVKPNAPIWRALLGACRIHKNVEVGERVGKILLEMQ 448

Query: 516 PDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSH 575
           P+  G YV+LSNIYA A +W  V+ +R+MMK +G RK PG S IE  G +HEF +GDK+H
Sbjct: 449 PEYSGHYVLLSNIYARANKWKDVTVMRQMMKDKGVRKPPGYSLIEIDGKVHEFTIGDKTH 508

Query: 576 PQTDEIHSKLSE-MRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINV 634
           P+ ++I     + +  K+K AG+V +T + +  I D++EKE  L  HSE+LAIA+G++ +
Sbjct: 509 PEIEKIERIWEDIILPKIKLAGYVGNTAETMFDI-DEEEKEGALHRHSEKLAIAYGIMKI 567

Query: 635 KSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           ++ +PIRIVKNLRVC DCH+ TKL+S ++  E+IVRD +RFHHFK G+CSC D+W
Sbjct: 568 RAPTPIRIVKNLRVCEDCHTATKLISKVFEVELIVRDRNRFHHFKEGTCSCMDYW 622



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 130/485 (26%), Positives = 219/485 (45%), Gaps = 87/485 (17%)

Query: 27  ILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPS 86
           +L+  S  ++ + +HA  ++T+L +    +SRL++  +D   N LHYA  +  +I Q+P+
Sbjct: 23  LLECCSNARDLKIIHAHMLRTHLFFDVFAASRLIAFCIDSTTNLLHYAIRVASQI-QNPN 81

Query: 87  LVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHG 146
           L +YN LI+    ++    +   +   L   LLPDN T P ++K  A+L     G Q HG
Sbjct: 82  LFIYNALIRGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQLENAPMGMQTHG 141

Query: 147 LVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEV 206
              K GF  D +V +SLV MYA  G+I+  R VF  M   D+VSW C+I GY + G+ + 
Sbjct: 142 QAIKHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAGYHRCGDAKS 201

Query: 207 AMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIF------------------------ 242
           A +LFD MP+R+L +W+ ++ G+++    E A E F                        
Sbjct: 202 ARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMVGVISSCAH 261

Query: 243 ------------YRMPNR---NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSM 287
                       Y M N+   NL+   A+++ Y + G+V+ A  +F+ +  +D++ W ++
Sbjct: 262 LGALAMGEKAHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKDVLCWTAL 321

Query: 288 IAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGF 347
           IAG  ++G   +AL     M     +P D T  + L+A                      
Sbjct: 322 IAGLAMHGYAEKALWYFSEMAKKGFVPRDITFTAVLTAC--------------------- 360

Query: 348 VVDGVLGTLLIQMYSKCGSIESALTVFRAISK-----KKVGHWTAMIVGLGMHGMATQAL 402
                         S  G +E  L +F ++ +      ++ H+  M+  LG  G   +A 
Sbjct: 361 --------------SHAGMVERGLEIFESMKRDHGVEPRLEHYGCMVDLLGRAGKLRKAE 406

Query: 403 DLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIE-HYGCLVD 461
                + +M +KP A  +  +L AC     V  G R   +++    ++P    HY  L +
Sbjct: 407 KF---VLKMPVKPNAPIWRALLGACRIHKNVEVGERVGKILLE---MQPEYSGHYVLLSN 460

Query: 462 ILCRT 466
           I  R 
Sbjct: 461 IYARA 465


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 249/697 (35%), Positives = 380/697 (54%), Gaps = 74/697 (10%)

Query: 32  STHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYN 91
           S  K    LHA S+      +  + S L+ LY     + + YAR +FD + +  + VL+N
Sbjct: 122 SNDKHLMLLHAHSIIDGYGSNVFVGSALVDLYCK--FSRVVYARKVFDGMPERDT-VLWN 178

Query: 92  LLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKL 151
            +I   V N    +++ LF +++   +  D+ T+  V+  AA L  +K G  I  L  K+
Sbjct: 179 TMINGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKI 238

Query: 152 GFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLF 211
           GFGF  +VL+ L+S+Y+K G+++  R +F  ++  DL+++N +I G+   G  E ++KLF
Sbjct: 239 GFGFCDYVLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLF 298

Query: 212 DEM----------------PDRDLFS---WTCLVDGF--------------------SKC 232
            E+                P    F      C + GF                    +K 
Sbjct: 299 RELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKL 358

Query: 233 GKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYE 292
            ++++AR +F   P + +V+WNAMI+GY + G  ++A  LF +                 
Sbjct: 359 NEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKE----------------- 401

Query: 293 LNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV 352
                         M+  +  PN  T+ + LSA A L  L+ G+W+H  I       +  
Sbjct: 402 --------------MMKTEFTPNAVTITTILSACAQLGSLSFGKWVHHLIKSENLEPNIY 447

Query: 353 LGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG 412
           + T L+ MY+KCG+I  A  +F ++S+K    W  MI G G+HG   +AL L+N+M  +G
Sbjct: 448 VSTALVDMYAKCGNISEAWQLFDSMSEKNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLG 507

Query: 413 MKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEA 472
             P+A+TF+ VL ACSHAGLV +G   F+ M+N Y IEP IEHY C+VDIL R+G LE+A
Sbjct: 508 YNPSAVTFLSVLYACSHAGLVGEGEEIFHNMVNKYRIEPLIEHYACMVDILGRSGQLEKA 567

Query: 473 KSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAA 532
              I+ MP+ P   +W +LL     H + DI   A+  L ++ P ++G YV+LSNIY+  
Sbjct: 568 LEFIKKMPVEPGPAVWGTLLGACMIHKDTDIARLASERLFELDPGSVGYYVLLSNIYSVE 627

Query: 533 GQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKL 592
             + K + +R+++KKR   K PG + IE  G  H FV GD+SH    +I++KL ++  K+
Sbjct: 628 RNFPKAASIRQVVKKRKLAKSPGCTLIEVNGTPHVFVSGDRSHSHATDIYAKLEKLTGKM 687

Query: 593 KAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDC 652
           +  G+  +T   L  +E++ EKE  +  HSE+LAIAFGLI  +  + IRI+KNLRVC DC
Sbjct: 688 REMGYQAETVPALHDVEEE-EKELAVNVHSEKLAIAFGLITTEPGNEIRIIKNLRVCLDC 746

Query: 653 HSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           H+ TK +S I  R I+VRD +RFHHFK+G CSC D+W
Sbjct: 747 HTATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 783



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 106/448 (23%), Positives = 185/448 (41%), Gaps = 44/448 (9%)

Query: 143 QIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKG 202
           Q H      G+ FD   L+ L      F      R +F ++   D+  +N L+ G+    
Sbjct: 30  QTHAQFILNGYRFDLATLTKLTQKLFDFSATRHARALFFSVPKPDIFLFNVLVRGFSLND 89

Query: 203 EVEVAMKLFDEM-------PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNA 255
               ++ L+  +       PD   +++        K   +  A  I       N+   +A
Sbjct: 90  SPSSSISLYTHLRRNTNLSPDNFTYAFAVAACSNDKHLMLLHAHSIIDGY-GSNVFVGSA 148

Query: 256 MINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPN 315
           +++ Y K   V  A ++FD M  RD + WN+MI G   N  F ++++L   M+   V  +
Sbjct: 149 LVDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLVKNCCFDDSIQLFREMVADGVRVD 208

Query: 316 DATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFR 375
            +T+ + L A A L  L  G  +    +K GF     + T LI +YSKCG + +A  +FR
Sbjct: 209 SSTVTAVLPAAAELQELKVGMGIQCLALKIGFGFCDYVLTGLISLYSKCGDVNTARLLFR 268

Query: 376 AISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN---------- 425
            I++  +  + AMI G   +G    ++ LF ++   G + ++ T +G++           
Sbjct: 269 RINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSGERVSSSTIVGLIPLHSPFGHLHL 328

Query: 426 ACS-HAGLVNDG-------RRYFNMMIN------------DYGIEPTIEHYGCLVDILCR 465
           ACS H   V  G          F  + N            D   E T+  +  ++    +
Sbjct: 329 ACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQ 388

Query: 466 TGYLEEAKSTIESM---PMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCY 522
            G  E A S  + M      PN V   ++LS     G+   G++  ++LIK        Y
Sbjct: 389 NGSTETAISLFKEMMKTEFTPNAVTITTILSACAQLGSLSFGKW-VHHLIKSENLEPNIY 447

Query: 523 V--VLSNIYAAAGQWDKVSEVREMMKKR 548
           V   L ++YA  G   +  ++ + M ++
Sbjct: 448 VSTALVDMYAKCGNISEAWQLFDSMSEK 475


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 244/623 (39%), Positives = 366/623 (58%), Gaps = 39/623 (6%)

Query: 105 EALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF--------- 155
           EA++ + ++      PDNF  P V+K  + L  +K G+QIH    K G+G          
Sbjct: 75  EAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTL 134

Query: 156 -----------DK-FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGE 203
                      DK F  ++L++MYAK G +D  + +F++  D+D+VSWN +I  + +   
Sbjct: 135 VNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDR 194

Query: 204 VEVAMKLFD----EMPDRDLFSWTCLVDGFSKCGKVEIAREIF-YRMPNRNLVS----WN 254
              A+  F     E  + D  +   ++   S   ++++ +EI  Y + N +L+      +
Sbjct: 195 FSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGS 254

Query: 255 AMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALEL-LETMLIGDVL 313
           A+++ Y     V+S   +FD +  R +  WN+MI+GY  NG   +AL L +E + +  +L
Sbjct: 255 ALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLL 314

Query: 314 PNDATLVSALSA-VAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALT 372
           PN  T+ S + A V  LA + KG+ +H+Y ++N    D  +G+ L+ MY+KCG +  +  
Sbjct: 315 PNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRR 374

Query: 373 VFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMC----RMG-MKPTAITFIGVLNAC 427
           VF  +  K V  W  +I+  GMHG   +AL+LF  M     R G  KP  +TFI V  AC
Sbjct: 375 VFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAAC 434

Query: 428 SHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFV- 486
           SH+GL+++G   F  M +D+G+EPT +HY C+VD+L R G LEEA   + +MP   + V 
Sbjct: 435 SHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVG 494

Query: 487 IWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMK 546
            W SLL   R H N ++GE AA NL+ + P+    YV+LSNIY++AG W+K  EVR+ M+
Sbjct: 495 AWSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMR 554

Query: 547 KRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLL 606
           + G +K+PG S IE R  +H+F+ GD SHPQ++++H  L  +  K++  G+VPDT+ VL 
Sbjct: 555 QMGVKKEPGCSWIEFRDEVHKFMAGDVSHPQSEQLHGFLETLSEKMRKEGYVPDTSCVLH 614

Query: 607 CIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNRE 666
            + D+ EKE  L  HSE+LAIAFG++N    + IR+ KNLRVCNDCH+ TK +S I  RE
Sbjct: 615 NV-DEDEKENLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHAATKFISKIMERE 673

Query: 667 IIVRDNSRFHHFKNGSCSCKDFW 689
           IIVRD  RFHHFK G+CSC D+W
Sbjct: 674 IIVRDVRRFHHFKEGTCSCGDYW 696



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/264 (22%), Positives = 104/264 (39%), Gaps = 25/264 (9%)

Query: 279 RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWM 338
           R   +W   +     +  F EA+     M +    P++    + L AV+GL  L  G  +
Sbjct: 55  RSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQI 114

Query: 339 HSYIVKNGFVVDGV-LGTLLIQMYSKCGSI--------------------ESALTVFRAI 377
           H+  VK G+    V +   L+ MY KCG I                    + +  +F + 
Sbjct: 115 HAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFESF 174

Query: 378 SKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGR 437
             + +  W  MI         ++AL  F  M   G++   +T   VL ACSH   ++ G+
Sbjct: 175 VDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGK 234

Query: 438 RYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARN 497
                ++ +  +         LVD+ C    +E  +   + +  R    +W +++SG   
Sbjct: 235 EIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGR-RIELWNAMISGYAR 293

Query: 498 HGNKDIGEYAANNLIKVA---PDT 518
           +G  +        +IKVA   P+T
Sbjct: 294 NGLDEKALILFIEMIKVAGLLPNT 317


>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
          Length = 582

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 211/439 (48%), Positives = 295/439 (67%), Gaps = 2/439 (0%)

Query: 252 SWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGD 311
           ++N +I  Y +AG +  A  LFD+M  R+ ++W++M+ GY   G   EAL +   M   D
Sbjct: 145 TFNTLITAYARAGRLADARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARMQAED 204

Query: 312 VLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESAL 371
           V P+D  LV  L+A A    L +G+W+H Y+  +G  ++   GT L+ MYSKCG ++ A+
Sbjct: 205 VRPDDTVLVGVLAACAQHGALEQGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQLAM 264

Query: 372 TVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAG 431
            VF  +  K V  WT MI GL MHG  ++A+ LF +M   G++P  I FIGVL AC+HAG
Sbjct: 265 DVFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIRPDDIAFIGVLCACTHAG 324

Query: 432 LVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSL 491
           LV+ GR  F+ M+  YGI+P IEHYGC+VD+L R G+L EAK  I+ MPM P+ +IW +L
Sbjct: 325 LVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGFLYEAKEMIQKMPMEPDALIWGAL 384

Query: 492 LSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFR 551
           ++G R H N +  EY A + I + PD  G YV+LSNIYAA+G+     E+R +M+++G  
Sbjct: 385 MAGCRFHKNVEFAEYVAKHWILLEPDKSGAYVLLSNIYAASGRHASAREIRHLMREKGVD 444

Query: 552 KDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLK-AAGHVPDTTQVLLCIED 610
           K PG S++E  GV+H+F+VGD SHP+  +I SK  E+  +++   G++PD  +VLL IE+
Sbjct: 445 KTPGCSTVEVNGVIHQFIVGDLSHPRIKDILSKWYEIDTRIRLEEGYIPDMKEVLLDIEE 504

Query: 611 QKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVR 670
           + EKE  L  HSE+LAIAF LI++    PIRI KNLRVC+DCH VTKL+S +Y REI+VR
Sbjct: 505 E-EKEGALSRHSEKLAIAFALISISDNMPIRIFKNLRVCHDCHHVTKLISKVYGREIVVR 563

Query: 671 DNSRFHHFKNGSCSCKDFW 689
           D +RFH FK G+CSCKD+W
Sbjct: 564 DRTRFHLFKEGTCSCKDYW 582



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 99/388 (25%), Positives = 163/388 (42%), Gaps = 81/388 (20%)

Query: 86  SLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGK--- 142
           S+ L++ LI+    + R H AL L+  LL   LLP   TLP ++K  A   A+       
Sbjct: 36  SVELHDALIRALSRSARPHLALPLYAHLLRAGLLPTPHTLPSLLKSMALSPAVPGAAVLA 95

Query: 143 -QIHGLVFKLGFGFDKFVLSS--LVSMYAKF-GEIDLGRRVFDAMDDKDLVSWNCLIDGY 198
             +H    KL  G D+FVL S  L+ ++A F G +  G  +       D  ++N LI  Y
Sbjct: 96  LTVHTHAVKL--GLDRFVLVSNALIRVHAGFLGSLADGLLLLRTAAAVDASTFNTLITAY 153

Query: 199 VKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR---------- 248
            + G +  A  LFDEMP R+  SW+ +V+G+ + G    A  IF RM             
Sbjct: 154 ARAGRLADARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARMQAEDVRPDDTVLV 213

Query: 249 -----------------------------NLVSWNAMINGYMKAGDVDSACELFDDMEIR 279
                                        NL    A+++ Y K G+V  A ++F+ M+ +
Sbjct: 214 GVLAACAQHGALEQGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQLAMDVFERMQYK 273

Query: 280 DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMH 339
           +++ W +MI G  ++GR  EA+ L   M    + P+D   +  L A     +++KGR + 
Sbjct: 274 NVLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIRPDDIAFIGVLCACTHAGLVDKGRELF 333

Query: 340 SYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMAT 399
             +V+   +                              K K+ H+  M+  L  +G   
Sbjct: 334 DSMVRKYGI------------------------------KPKIEHYGCMVDLLARNGFLY 363

Query: 400 QALDLFNKMCRMGMKPTAITFIGVLNAC 427
           +A ++  K   M M+P A+ +  ++  C
Sbjct: 364 EAKEMIQK---MPMEPDALIWGALMAGC 388



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 118/242 (48%), Gaps = 15/242 (6%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           AR++FD +    + V ++ ++  YV      EAL +F  +    + PD+  L  V+   A
Sbjct: 162 ARALFDEMPARNA-VSWSAMVNGYVQAGDGREALRIFARMQAEDVRPDDTVLVGVLAACA 220

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
           + GA+++GK +HG +   G   + F  ++LV MY+K GE+ L   VF+ M  K++++W  
Sbjct: 221 QHGALEQGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQLAMDVFERMQYKNVLAWTT 280

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREIFYRMPNR- 248
           +I G    G    A+ LF +M       D  ++  ++   +  G V+  RE+F  M  + 
Sbjct: 281 MIKGLAMHGRGSEAVMLFAQMESSGIRPDDIAFIGVLCACTHAGLVDKGRELFDSMVRKY 340

Query: 249 ----NLVSWNAMINGYMKAGDVDSACELFDDMEIR-DLITWNSMIAGYELNGRFMEALEL 303
                +  +  M++   + G +  A E+   M +  D + W +++AG     RF + +E 
Sbjct: 341 GIKPKIEHYGCMVDLLARNGFLYEAKEMIQKMPMEPDALIWGALMAGC----RFHKNVEF 396

Query: 304 LE 305
            E
Sbjct: 397 AE 398



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 95/388 (24%), Positives = 156/388 (40%), Gaps = 77/388 (19%)

Query: 219 LFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEI 278
           +F     VD  S+CG+             R +V   A +   + +G +  + EL D    
Sbjct: 1   MFGVAGYVDLLSRCGEA------------RAIVRIQAAL---LTSGQLPRSVELHD---- 41

Query: 279 RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS------AVAGLAVL 332
                  ++I     + R   AL L   +L   +LP   TL S L       AV G AVL
Sbjct: 42  -------ALIRALSRSARPHLALPLYAHLLRAGLLPTPHTLPSLLKSMALSPAVPGAAVL 94

Query: 333 NKGRWMHSYIVKNGF------------VVDGVLGTL--------------------LIQM 360
                +H++ VK G             V  G LG+L                    LI  
Sbjct: 95  --ALTVHTHAVKLGLDRFVLVSNALIRVHAGFLGSLADGLLLLRTAAAVDASTFNTLITA 152

Query: 361 YSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITF 420
           Y++ G +  A  +F  +  +    W+AM+ G    G   +AL +F +M    ++P     
Sbjct: 153 YARAGRLADARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARMQAEDVRPDDTVL 212

Query: 421 IGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP 480
           +GVL AC+  G +  G ++ +  +  +GI+  +     LVD+  + G ++ A    E M 
Sbjct: 213 VGVLAACAQHGALEQG-KWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQLAMDVFERMQ 271

Query: 481 MRPNFVIWMSLLSGARNH--GNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKV 538
            + N + W +++ G   H  G++ +  +A      + PD I    VL      AG  DK 
Sbjct: 272 YK-NVLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIRPDDIAFIGVLCAC-THAGLVDKG 329

Query: 539 SEVRE-MMKKRGFRKDPGSSSIEHRGVL 565
            E+ + M++K G +       IEH G +
Sbjct: 330 RELFDSMVRKYGIK-----PKIEHYGCM 352


>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Cucumis sativus]
          Length = 614

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 254/659 (38%), Positives = 369/659 (55%), Gaps = 67/659 (10%)

Query: 33  THKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNL 92
           T KE +Q+H   V   L+ +  +  + ++     +  NL Y+  I D+  + P+L   N 
Sbjct: 21  TLKELKQIHTQLVINGLLNNRELLGQFVASIAVRNPTNLLYSNQILDQCAK-PTLFALNS 79

Query: 93  LIKCYVFNQRSHEALTLFCDLL--DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFK 150
           +I+ Y  +   H++   +  +L  +  + PDN+T   +++  A+  A + G  +HG + K
Sbjct: 80  MIRAYSKSLTPHKSFQFYNKILQSNDVMSPDNYTFNFLVRTCAQ-SACEAGPAVHGALIK 138

Query: 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
            GF +                                        D +V+ G +     +
Sbjct: 139 HGFEY----------------------------------------DPHVESGLI----FM 154

Query: 211 FDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSAC 270
           + EM        +CL    S C +V      F  +   +LV    M++   K GD+  A 
Sbjct: 155 YAEM--------SCL----SSCHRV------FESVQKPDLVCQTTMVSACAKCGDIGFAR 196

Query: 271 ELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLA 330
            LFD M  RD ++WN+MIAGY   G+  EAL L + M +  V  N+ +++S ++A   L 
Sbjct: 197 NLFDSMPQRDFVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKVNEVSMISVVTACTHLG 256

Query: 331 VLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIV 390
            L++G+W H+YI KN   +   LGT L+ MY KCG+++ AL VF  +++K V  W+  I 
Sbjct: 257 ALDQGKWAHAYIEKNKIQMTVNLGTALVDMYFKCGNVDRALKVFWEMNEKNVYTWSTAIG 316

Query: 391 GLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIE 450
           GL M+G   + L+LF+ M   G+ P  ITFI VL  CS  G V++GR +F+ M  D+GIE
Sbjct: 317 GLAMNGYGQKCLELFSFMKHEGIAPNEITFISVLKGCSVVGFVDEGRSHFDSMKRDHGIE 376

Query: 451 PTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANN 510
           P +EHYGC+VD+  R G LEEA + I +MP++P+   W +LL+  R + N ++GE+A+  
Sbjct: 377 PRLEHYGCMVDLYGRAGRLEEALNFINTMPLKPHAGAWGALLNACRMYKNMELGEFASRK 436

Query: 511 LIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVV 570
           LI+V     G YV LSNIYA  G WD+VS VR+ MK  G  K PG S +E  G +HEF  
Sbjct: 437 LIEVEGKNHGAYVSLSNIYADTGNWDRVSNVRQSMKAEGISKLPGCSVMEVNGEVHEFFS 496

Query: 571 GDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFG 630
           GDKSHP  D I +   E+  +LK AG+V  T  VL  IE++ EKE  L  HSE++AIAFG
Sbjct: 497 GDKSHPSYDVIETMWGEISKRLKLAGYVASTNSVLFDIEEE-EKEDALCKHSEKMAIAFG 555

Query: 631 LINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           L ++K   PIRIVKNLR+C DCH V+K++S I+ REIIVRD +RFHHFK+G CSCKDFW
Sbjct: 556 LFSLKEGLPIRIVKNLRICWDCHDVSKMISKIFEREIIVRDRNRFHHFKDGECSCKDFW 614


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 244/657 (37%), Positives = 391/657 (59%), Gaps = 16/657 (2%)

Query: 40  LHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVF 99
           +  + +K ++I ++G    LLS+Y     N L   R IFD+++   + V +N +I  Y  
Sbjct: 242 IEKIGIKKDVIVNNG----LLSMYC--KFNGLIDGRRIFDKMVLRDA-VSWNTMICGYSQ 294

Query: 100 NQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFV 159
                E++ LF +++++F  PD  T+  +++    LG ++ GK +H  +   G+  D   
Sbjct: 295 VGLYEESIKLFMEMVNQFK-PDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTA 353

Query: 160 LSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR-- 217
            + L++MYAK G +   + VF  M  KD VSWN +I+ Y++ G  + AMKLF  M     
Sbjct: 354 SNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTDVK 413

Query: 218 -DLFSWTCLVDGFSKCGKVEIAREIFYRMP----NRNLVSWNAMINGYMKAGDVDSACEL 272
            D  ++  L+   ++ G + + +E+   +     N N+V  N +++ Y K G++  + ++
Sbjct: 414 PDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKV 473

Query: 273 FDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVL 332
           F++M+ RD+ITWN++IA    +      L ++  M    V P+ AT++S L   + LA  
Sbjct: 474 FENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAK 533

Query: 333 NKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGL 392
            +G+ +H  I K G   D  +G +LI+MYSKCGS+ ++  VF+ +  K V  WTA+I   
Sbjct: 534 RQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISAC 593

Query: 393 GMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT 452
           GM+G   +A+  F +M   G+ P  + F+ ++ ACSH+GLV +G  YF+ M  DY IEP 
Sbjct: 594 GMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPR 653

Query: 453 IEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLI 512
           IEHY C+VD+L R+  L++A+  I SMP++P+  IW +LLS  R  G+ +I E  +  +I
Sbjct: 654 IEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERII 713

Query: 513 KVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGD 572
           ++ PD  G YV++SNIYAA G+WD+V  +R+ +K RG +KDPG S +E +  ++ F  G 
Sbjct: 714 ELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGT 773

Query: 573 KSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLI 632
           K   Q +E++  L  +   +   G++ +   VL  I D+ EK   L  HSERLAIAFGL+
Sbjct: 774 KFFEQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDI-DEDEKRDILCGHSERLAIAFGLL 832

Query: 633 NVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           N K  +P++++KNLRVC DCH+VTK +S I  RE++VRD +RFH FK+G+CSC D+W
Sbjct: 833 NTKPGTPLQVMKNLRVCEDCHTVTKYISKIVQRELLVRDANRFHVFKDGACSCGDYW 889



 Score =  204 bits (520), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 140/480 (29%), Positives = 239/480 (49%), Gaps = 15/480 (3%)

Query: 55  ISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL 114
           I + L+ +Y     N+L  AR +F+  +    +V +N LI  Y  N   +EAL ++    
Sbjct: 152 IGNALIDMYC--RFNDLDKARKVFEE-MPLRDVVSWNSLISGYNANGYWNEALEIYYRFR 208

Query: 115 DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEID 174
           +  ++PD++T+  V++    LG+++EG  IHGL+ K+G   D  V + L+SMY KF  + 
Sbjct: 209 NLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLI 268

Query: 175 LGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR---DLFSWTCLVDGFSK 231
            GRR+FD M  +D VSWN +I GY + G  E ++KLF EM ++   DL + T ++     
Sbjct: 269 DGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQFKPDLLTITSILQACGH 328

Query: 232 CGKVEIAREIFYRMPNR----NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSM 287
            G +E  + +   M       +  + N +IN Y K G++ ++ E+F  M+ +D ++WNSM
Sbjct: 329 LGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSM 388

Query: 288 IAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGF 347
           I  Y  NG F EA++L + M+  DV P+  T V  LS    L  L+ G+ +H  + K GF
Sbjct: 389 INVYIQNGSFDEAMKLFK-MMKTDVKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGF 447

Query: 348 VVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNK 407
             + V+   L+ MY+KCG +  +L VF  +  + +  W  +I            L + ++
Sbjct: 448 NSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISR 507

Query: 408 MCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTG 467
           M   G+ P   T + +L  CS       G+   +  I   G+E  +     L+++  + G
Sbjct: 508 MRTEGVTPDMATMLSILPVCSLLAAKRQGKE-IHGCIFKLGLESDVPVGNVLIEMYSKCG 566

Query: 468 YLEEAKSTIESMPMRPNFVIWMSLLS--GARNHGNKDIGEYAANNLIKVAPDTIGCYVVL 525
            L  +    + M  + + V W +L+S  G    G K +  +       + PD +    ++
Sbjct: 567 SLRNSFQVFKLMKTK-DVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAII 625



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 128/485 (26%), Positives = 246/485 (50%), Gaps = 14/485 (2%)

Query: 28  LKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSL 87
           L  ++T  +  +LH+L +   L +    S++L++ Y   H  +   + S+F       ++
Sbjct: 23  LASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYA--HFRDPTSSFSVFRLASPSNNV 80

Query: 88  VLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGL 147
            L+N +I+    N    EAL+L+ +     L PD +T P VI   A L   +  K IH  
Sbjct: 81  YLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDR 140

Query: 148 VFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVA 207
           V  +GFG D ++ ++L+ MY +F ++D  R+VF+ M  +D+VSWN LI GY   G    A
Sbjct: 141 VLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEA 200

Query: 208 MKLFDEMPD----RDLFSWTCLVDGFSKCGKVE---IAREIFYRMP-NRNLVSWNAMING 259
           ++++    +     D ++ + ++      G VE   I   +  ++   ++++  N +++ 
Sbjct: 201 LEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSM 260

Query: 260 YMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATL 319
           Y K   +     +FD M +RD ++WN+MI GY   G + E+++L   M +    P+  T+
Sbjct: 261 YCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEM-VNQFKPDLLTI 319

Query: 320 VSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK 379
            S L A   L  L  G+++H Y++ +G+  D     +LI MY+KCG++ ++  VF  +  
Sbjct: 320 TSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKC 379

Query: 380 KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRY 439
           K    W +MI     +G   +A+ LF KM +  +KP ++T++ +L+  +  G ++ G+  
Sbjct: 380 KDSVSWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGDLHLGKE- 437

Query: 440 FNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
            +  +   G    I     LVD+  + G + ++    E+M  R + + W ++++   +  
Sbjct: 438 LHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKAR-DIITWNTIIASCVHSE 496

Query: 500 NKDIG 504
           + ++G
Sbjct: 497 DCNLG 501



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 110/425 (25%), Positives = 194/425 (45%), Gaps = 22/425 (5%)

Query: 143 QIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFD-AMDDKDLVSWNCLIDGYVKK 201
           ++H L+  LG        + L++ YA F +      VF  A    ++  WN +I      
Sbjct: 34  KLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVYLWNSIIRALTHN 93

Query: 202 GEVEVAMKLFDEMP----DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPN----RNLVSW 253
           G    A+ L+ E        D +++  +++  +     E+A+ I  R+ +     +L   
Sbjct: 94  GLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIG 153

Query: 254 NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL 313
           NA+I+ Y +  D+D A ++F++M +RD+++WNS+I+GY  NG + EALE+        V+
Sbjct: 154 NALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVV 213

Query: 314 PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTV 373
           P+  T+ S L A  GL  + +G  +H  I K G   D ++   L+ MY K   +     +
Sbjct: 214 PDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRI 273

Query: 374 FRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLV 433
           F  +  +    W  MI G    G+  +++ LF +M     KP  +T   +L AC H G +
Sbjct: 274 FDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ-FKPDLLTITSILQACGHLGDL 332

Query: 434 NDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLS 493
             G+   + MI   G E        L+++  + G L  ++     M  + + V W S+++
Sbjct: 333 EFGKYVHDYMITS-GYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDS-VSWNSMIN 390

Query: 494 GARNHGNKDIGEYAANNLIK-----VAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548
               +G+ D     A  L K     V PD++  YV+L ++    G      E+   + K 
Sbjct: 391 VYIQNGSFD----EAMKLFKMMKTDVKPDSV-TYVMLLSMSTQLGDLHLGKELHCDLAKM 445

Query: 549 GFRKD 553
           GF  +
Sbjct: 446 GFNSN 450



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 122/244 (50%), Gaps = 15/244 (6%)

Query: 318 TLVSALS-AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFR- 375
           TL S++S A+A  A   +   +HS I+  G     +    LI  Y+      S+ +VFR 
Sbjct: 14  TLFSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRL 73

Query: 376 AISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVN- 434
           A     V  W ++I  L  +G+ ++AL L+++  R+ ++P   TF  V+NAC  AGL++ 
Sbjct: 74  ASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINAC--AGLLDF 131

Query: 435 DGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG 494
           +  +  +  + D G    +     L+D+ CR   L++A+   E MP+R + V W SL+SG
Sbjct: 132 EMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLR-DVVSWNSLISG 190

Query: 495 ARNHG--NKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSE---VREMMKKRG 549
              +G  N+ +  Y     + V PD+      +S++  A G    V E   +  +++K G
Sbjct: 191 YNANGYWNEALEIYYRFRNLGVVPDS----YTMSSVLRACGGLGSVEEGDIIHGLIEKIG 246

Query: 550 FRKD 553
            +KD
Sbjct: 247 IKKD 250


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 257/762 (33%), Positives = 395/762 (51%), Gaps = 113/762 (14%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPH--INNLHYARSIFDRI-LQHPSLVLYNLLI 94
           + +HA +VK  L+  + + + LLS Y +       L  AR +FD I L   ++  +N L+
Sbjct: 46  RAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFDEIPLARRNVFTWNSLL 105

Query: 95  KCYVFNQRSHEALTLFCDLLDR-------------------------------FLLPDNF 123
             +  + R  +A  +F ++ +R                                  P  F
Sbjct: 106 SMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQF 165

Query: 124 TLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAK-------------- 169
           TL  V+   A   A   G+++H  V KLG G    V +S+++MY K              
Sbjct: 166 TLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERM 225

Query: 170 -----------------FGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFD 212
                             G +DL   +F++M D+ +VSWN +I GY + G    A+KLF 
Sbjct: 226 PVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFS 285

Query: 213 EM-------PDRDLFSWT-----------------------------------CLVDGFS 230
            M       PD   F+ T                                    L+  ++
Sbjct: 286 RMLHESSMAPDE--FTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYA 343

Query: 231 KCGKVEIAREIFYRM--PNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMI 288
           K G VE AR I  +    + N++S+ A++ GY+K GD++SA E+F  M  RD++ W +MI
Sbjct: 344 KSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMI 403

Query: 289 AGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFV 348
            GYE NGR  EA++L  +M+     PN  TL + LS  A LA L+ G+ +H   +++   
Sbjct: 404 VGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLE 463

Query: 349 VDGVLGTLLIQMYSKCGSIESALTVFRAIS-KKKVGHWTAMIVGLGMHGMATQALDLFNK 407
               +   +I MY++ GS   A  +F  +  +K+   WT+MIV L  HG   +A+ LF +
Sbjct: 464 QSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEE 523

Query: 408 MCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTG 467
           M R G++P  IT++GVL+ACSHAG VN+G+RY++ + N++ I P + HY C+VD+L R G
Sbjct: 524 MLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAG 583

Query: 468 YLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSN 527
              EA+  I  MP+ P+ + W SLLS  R H N ++ E AA  L+ + P+  G Y  ++N
Sbjct: 584 LFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIAN 643

Query: 528 IYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSE 587
           +Y+A G+W   + + +  K++  RK+ G S    R  +H F   D  HPQ D +++  + 
Sbjct: 644 VYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAAR 703

Query: 588 MRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLR 647
           M  ++K AG VPD   VL  ++D+  KE  L  HSE+LAIAFGLI+   ++ +R++KNLR
Sbjct: 704 MWEEIKGAGFVPDLQSVLHDVDDEL-KEELLSRHSEKLAIAFGLISTPEKTTLRVMKNLR 762

Query: 648 VCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           VCNDCH+  K +S + +REIIVRD +RFHHF++G CSCKD+W
Sbjct: 763 VCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 804



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 125/509 (24%), Positives = 211/509 (41%), Gaps = 116/509 (22%)

Query: 130 KGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKF----GEIDLGRRVFD--AM 183
           + AA  GA   G+ IH    K G     ++ ++L+S Y +     G +   RR+FD   +
Sbjct: 37  QTAANPGA---GRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFDEIPL 93

Query: 184 DDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFY 243
             +++ +WN L+  + K G +  A  +F EMP+RD  SWT +V G ++ G+   A +   
Sbjct: 94  ARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLL 153

Query: 244 RM------PNR----NLVS-----------------------------WNAMINGYMKAG 264
            M      P +    N++S                              N+++N Y K G
Sbjct: 154 DMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCG 213

Query: 265 DVDSACELFDDMEI-------------------------------RDLITWNSMIAGYEL 293
           D ++A  +F+ M +                               R +++WN+MIAGY  
Sbjct: 214 DSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQ 273

Query: 294 NGRFMEALELLETML-IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV 352
           NG   +AL+L   ML    + P++ T+ S LSA A L  +  G+ +H+YI++     +  
Sbjct: 274 NGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQ 333

Query: 353 LGTLLIQMYSKCGSI---------------------------------ESALTVFRAISK 379
           +   LI  Y+K GS+                                 ESA  +F  ++ 
Sbjct: 334 VTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNN 393

Query: 380 KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRY 439
           + V  WTAMIVG   +G   +A+DLF  M   G +P + T   VL+ C+    ++ G++ 
Sbjct: 394 RDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQI 453

Query: 440 FNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
               I    +E +      ++ +  R+G    A+   + +  R   + W S++     HG
Sbjct: 454 HCRAIRSL-LEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHG 512

Query: 500 NKD--IGEYAANNLIKVAPDTIGCYVVLS 526
             +  +G +       V PD I    VLS
Sbjct: 513 QGEEAVGLFEEMLRAGVEPDRITYVGVLS 541


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 262/707 (37%), Positives = 384/707 (54%), Gaps = 64/707 (9%)

Query: 41  HALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHP--SLVLYNLLIKCYV 98
           HALS  T  + +  + + L+++Y      +L  AR +FD +   P   +V +N +I+ Y 
Sbjct: 150 HALSRVTGFMSNVFVGNALVAMY--SRCGSLSDARKVFDEM---PVWDVVSWNSIIESYA 204

Query: 99  FNQRSHEALTLFCDLLDRF-LLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
              +   AL +F  + + F   PD+ TL  V+   A +G    GKQ HG         + 
Sbjct: 205 KLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNM 264

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
           FV + LV MYAKFG +D    VF  M  KD+VSWN ++ GY + G  E A++LF++M + 
Sbjct: 265 FVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEE 324

Query: 218 ----DLFSWTCLVDGFSKCG----KVEIAREIFYRMPNRNLVSW---------------- 253
               D+ +W+  + G+++ G     + + R++       N V+                 
Sbjct: 325 KIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHG 384

Query: 254 --------------------------NAMINGYMKAGDVDSACELFDDMEI--RDLITWN 285
                                     N +I+ Y K   VD A  +FD +    RD++TW 
Sbjct: 385 KEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWT 444

Query: 286 SMIAGYELNGRFMEALELLETMLIGD--VLPNDATLVSALSAVAGLAVLNKGRWMHSYIV 343
            MI GY  +G   +ALELL  M   D    PN  T+  AL A A LA L+ G+ +H+Y +
Sbjct: 445 VMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALSIGKQIHAYAL 504

Query: 344 KNGF-VVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQAL 402
           +N    V   +   LI MY+KCG I  A  VF  + +K    WT+++ G GMHG   +AL
Sbjct: 505 RNQQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNMMEKNEVTWTSLMTGYGMHGYGEEAL 564

Query: 403 DLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDI 462
            +F +M R+G K   +T + VL ACSH+G+++ G  YFN M  D+G+ P  EHY CLVD+
Sbjct: 565 GIFEEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTDFGVSPGPEHYACLVDL 624

Query: 463 LCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCY 522
           L R G L  A   IE MPM P  V+W++LLS  R HG  ++GEYAA  + ++A +  G Y
Sbjct: 625 LGRAGRLNAALRLIEEMPMEPPPVVWVALLSCCRIHGKVELGEYAAKKITELASNNDGSY 684

Query: 523 VVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIH 582
            +LSN+YA AG+W  V+ +R +M+ +G +K PG S +E       F VGDK+HP   EI+
Sbjct: 685 TLLSNMYANAGRWKDVTRIRSLMRHKGIKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIY 744

Query: 583 SKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRI 642
             LS+   ++K  G+VP+T   L  ++D+ EK+  L  HSE+LA+A+G++     + IRI
Sbjct: 745 QVLSDHMQRIKDIGYVPETGFALHDVDDE-EKDDLLFEHSEKLALAYGILTTPQGAAIRI 803

Query: 643 VKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            KNLRVC DCH+    +S I + EII+RD+SRFHHFKNG CSCK +W
Sbjct: 804 TKNLRVCGDCHTAFTYMSRIIDHEIILRDSSRFHHFKNGLCSCKGYW 850



 Score =  232 bits (592), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 172/573 (30%), Positives = 279/573 (48%), Gaps = 74/573 (12%)

Query: 55  ISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVL-YNLLIKCYVFNQRSHEALTLFCDL 113
           ++S L+S Y+   +  L +A S+  R     + V  +N LI+ Y  N R+++ L+ FC +
Sbjct: 61  LTSHLISTYIS--LGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGNNGRANKCLSSFCLM 118

Query: 114 LDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEI 173
                 PDN+T P V K    + +++ G   H L    GF  + FV ++LV+MY++ G +
Sbjct: 119 HSLSWTPDNYTFPFVFKACGEISSVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRCGSL 178

Query: 174 DLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM-------PD---------- 216
              R+VFD M   D+VSWN +I+ Y K G+ ++A+++F +M       PD          
Sbjct: 179 SDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPP 238

Query: 217 -----------------------RDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSW 253
                                  +++F   CLVD ++K G ++ A  +F  MP +++VSW
Sbjct: 239 CASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSW 298

Query: 254 NAMINGYMKAGDVDSACELFDDMEIR----DLITWNSMIAGYELNGRFMEALELLETMLI 309
           NAM+ GY + G  + A  LF+ M+      D++TW++ I+GY   G   EAL +   ML 
Sbjct: 299 NAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLS 358

Query: 310 GDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIV-------KNGFVVDGVLGTLLIQMYS 362
             + PN+ TL+S LS  A +  L  G+ +H Y +       KNG   + ++   LI MY+
Sbjct: 359 SGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYA 418

Query: 363 KCGSIESALTVFRAISKKK--VGHWTAMIVGLGMHGMATQALDLFNKM----CRMGMKPT 416
           KC  ++ A  +F ++S K+  V  WT MI G   HG A +AL+L ++M    C+   +P 
Sbjct: 419 KCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQ--TRPN 476

Query: 417 AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTI 476
           A T    L AC+    ++ G++     + +      +    CL+D+  + G + +A+   
Sbjct: 477 AFTISCALVACASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDARLVF 536

Query: 477 ESMPMRPNFVIWMSLLSGARNH--GNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAA--A 532
           ++M M  N V W SL++G   H  G + +G +     I    D +   VVL   YA   +
Sbjct: 537 DNM-MEKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVL---YACSHS 592

Query: 533 GQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVL 565
           G  D+  E    MK   F   PG    EH   L
Sbjct: 593 GMIDQGMEYFNRMKT-DFGVSPGP---EHYACL 621



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 109/429 (25%), Positives = 178/429 (41%), Gaps = 74/429 (17%)

Query: 137 AIKEGKQIHGLVFKLGFGFDKFVLSS-LVSMYAKFG----EIDLGRRVFDAMDDKDLVSW 191
            I + K IH  +  L FG     L+S L+S Y   G     + L RR      D  +  W
Sbjct: 40  TISQVKLIHQKL--LSFGILTLNLTSHLISTYISLGCLSHAVSLLRRF--PPSDAGVYHW 95

Query: 192 NCLIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKCGKVEIAR-----E 240
           N LI  Y   G     +  F  M      PD   F +      F  CG++   R      
Sbjct: 96  NSLIRSYGNNGRANKCLSSFCLMHSLSWTPDNYTFPFV-----FKACGEISSVRCGDSSH 150

Query: 241 IFYRMPN--RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFM 298
              R+     N+   NA++  Y + G +  A ++FD+M + D+++WNS+I  Y   G+  
Sbjct: 151 ALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPK 210

Query: 299 EALELLETMLIG-DVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLL 357
            ALE+   M       P+D TLV+ L   A +   + G+  H + V +  + +  +G  L
Sbjct: 211 MALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCL 270

Query: 358 IQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKM--------- 408
           + MY+K G ++ A TVF  +  K V  W AM+ G    G    A+ LF +M         
Sbjct: 271 VDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDV 330

Query: 409 ----------------------CRM----GMKPTAITFIGVLNACSHAGLVNDGRRY--- 439
                                 CR     G+KP  +T I VL+ C+  G +  G+     
Sbjct: 331 VTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCY 390

Query: 440 -----FNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRPNFVIWMSLLS 493
                 ++  N +G E  + +   L+D+  +   ++ A++  +S+ P   + V W  ++ 
Sbjct: 391 AIKYPMDLRKNGHGDENMVINQ--LIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIG 448

Query: 494 GARNHGNKD 502
           G   HG+ +
Sbjct: 449 GYSQHGDAN 457


>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
          Length = 635

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 241/589 (40%), Positives = 341/589 (57%), Gaps = 38/589 (6%)

Query: 138 IKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDG 197
           ++   ++H    + G   D+ V   L   YA    +DL   +     D   V +   I  
Sbjct: 48  LRRTGELHAAAVRAGVDGDRAVGFRLQRAYAASDRLDLTVTLLRLTPDPTTVFYTSAIHA 107

Query: 198 YVKKGEVEVAMKLFDEMPDR------------------------------------DLFS 221
           +  +G    A+ L  EM  R                                    D + 
Sbjct: 108 HSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPACHGLALGRALHAYAFKLALAGDSYV 167

Query: 222 WTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDL 281
            T L+  +++ G  + AR +F  MP+ ++V   AM+  Y K G +D A ELFD M  +D 
Sbjct: 168 ATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDF 227

Query: 282 ITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSY 341
           I WN+MI GY  +GR  EAL L   ML   V P++  ++ ALSAVA L     GRW+HSY
Sbjct: 228 ICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSY 287

Query: 342 IVKNGFV-VDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQ 400
           +  +  V ++  +GT LI MY KCGS+E A++VF +I  K +  W AMI G  MHG + +
Sbjct: 288 VKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRK 347

Query: 401 ALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLV 460
           AL++F+++   G+ PT ITFIG+LNACSH+GLV++G ++F  M  +Y I P IEHYGC+V
Sbjct: 348 ALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMV 407

Query: 461 DILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIG 520
           D+L R G +EEA   ++SM + P+ V+W+SLL+  R H N  +G+  A+ L+       G
Sbjct: 408 DLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADYLVAGGLANSG 467

Query: 521 CYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDE 580
            Y++LSNIYAA G W++V+ VR MMK  G +K+PG S+IE    ++EFV GD SHP+TDE
Sbjct: 468 MYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVYEFVAGDMSHPRTDE 527

Query: 581 IHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPI 640
           I++ L +M   +K  GHVP T  VL  + D+  KE  L  HSE+LA+AFGLI+      I
Sbjct: 528 IYAMLEKMNGIVKEQGHVPQTELVLHDL-DEVTKEKALAVHSEKLAVAFGLISTAPGETI 586

Query: 641 RIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           +IVKNLR C DCH+V KL+S I  R+I+ RD +RFHHF +GSC+C D+W
Sbjct: 587 KIVKNLRACADCHAVLKLISKITGRKIVFRDRNRFHHFVDGSCTCGDYW 635



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 115/464 (24%), Positives = 192/464 (41%), Gaps = 81/464 (17%)

Query: 6   LQHSSPIHALQQH--LPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLY 63
           L  SS     QQH  L +     +L   +T + T +LHA +V+  +     +  RL   Y
Sbjct: 18  LPSSSASTGGQQHGVLTADRVAGLLTGCATLRRTGELHAAAVRAGVDGDRAVGFRLQRAY 77

Query: 64  VDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNF 123
                + L    ++  R+   P+ V Y   I  +        AL L  ++L R L+P + 
Sbjct: 78  AAS--DRLDLTVTLL-RLTPDPTTVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSH 134

Query: 124 TLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAM 183
           TL   +     L     G+ +H   FKL    D +V ++L+ MYA+ G+ D  R +FD M
Sbjct: 135 TLSSSLPACHGLAL---GRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDEM 191

Query: 184 DDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFY 243
            D  +V    ++  Y K G ++ A +LFD MP +D   W  ++DG+++ G+   A  +F 
Sbjct: 192 PDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFR 251

Query: 244 RM-----------------------------------PNRNLVSWN-----AMINGYMKA 263
            M                                    N   V  N     A+I+ Y K 
Sbjct: 252 WMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKC 311

Query: 264 GDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSAL 323
           G ++ A  +F+ +  +D++ WN+MI GY ++G   +ALE+   +    + P D T +  L
Sbjct: 312 GSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLL 371

Query: 324 SAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVG 383
           +A +           HS +V  G            Q +    S+E    +       K+ 
Sbjct: 372 NACS-----------HSGLVDEGH-----------QFFQ---SMEEEYAIV-----PKIE 401

Query: 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNAC 427
           H+  M+  LG  G+  +A  L   M    + P  + ++ +L AC
Sbjct: 402 HYGCMVDLLGRAGLIEEAFHLVQSMT---IAPDTVMWVSLLAAC 442


>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
          Length = 634

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 241/589 (40%), Positives = 341/589 (57%), Gaps = 38/589 (6%)

Query: 138 IKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDG 197
           ++   ++H    + G   D+ V   L   YA    +DL   +     D   V +   I  
Sbjct: 47  LRRTGELHAAAVRAGVDGDRAVGFRLQRAYAASDRLDLTVTLLRLTPDPTTVFYTSAIHA 106

Query: 198 YVKKGEVEVAMKLFDEMPDR------------------------------------DLFS 221
           +  +G    A+ L  EM  R                                    D + 
Sbjct: 107 HSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPACHGLALGRALHAYAFKLALAGDSYV 166

Query: 222 WTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDL 281
            T L+  +++ G  + AR +F  MP+ ++V   AM+  Y K G +D A ELFD M  +D 
Sbjct: 167 ATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDF 226

Query: 282 ITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSY 341
           I WN+MI GY  +GR  EAL L   ML   V P++  ++ ALSAVA L     GRW+HSY
Sbjct: 227 ICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSY 286

Query: 342 IVKNGFV-VDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQ 400
           +  +  V ++  +GT LI MY KCGS+E A++VF +I  K +  W AMI G  MHG + +
Sbjct: 287 VKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRK 346

Query: 401 ALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLV 460
           AL++F+++   G+ PT ITFIG+LNACSH+GLV++G ++F  M  +Y I P IEHYGC+V
Sbjct: 347 ALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMV 406

Query: 461 DILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIG 520
           D+L R G +EEA   ++SM + P+ V+W+SLL+  R H N  +G+  A+ L+       G
Sbjct: 407 DLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADYLVAGGLANSG 466

Query: 521 CYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDE 580
            Y++LSNIYAA G W++V+ VR MMK  G +K+PG S+IE    ++EFV GD SHP+TDE
Sbjct: 467 MYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVYEFVAGDMSHPRTDE 526

Query: 581 IHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPI 640
           I++ L +M   +K  GHVP T  VL  + D+  KE  L  HSE+LA+AFGLI+      I
Sbjct: 527 IYAMLEKMNGIVKEQGHVPQTELVLHDL-DEVTKEKALAVHSEKLAVAFGLISTAPGETI 585

Query: 641 RIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           +IVKNLR C DCH+V KL+S I  R+I+ RD +RFHHF +GSC+C D+W
Sbjct: 586 KIVKNLRACADCHAVLKLISKITGRKIVFRDRNRFHHFVDGSCTCGDYW 634



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 115/464 (24%), Positives = 192/464 (41%), Gaps = 81/464 (17%)

Query: 6   LQHSSPIHALQQH--LPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLY 63
           L  SS     QQH  L +     +L   +T + T +LHA +V+  +     +  RL   Y
Sbjct: 17  LPSSSASTGGQQHGVLTADRVAGLLTGCATLRRTGELHAAAVRAGVDGDRAVGFRLQRAY 76

Query: 64  VDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNF 123
                + L    ++  R+   P+ V Y   I  +        AL L  ++L R L+P + 
Sbjct: 77  AAS--DRLDLTVTLL-RLTPDPTTVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSH 133

Query: 124 TLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAM 183
           TL   +     L     G+ +H   FKL    D +V ++L+ MYA+ G+ D  R +FD M
Sbjct: 134 TLSSSLPACHGLAL---GRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDEM 190

Query: 184 DDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFY 243
            D  +V    ++  Y K G ++ A +LFD MP +D   W  ++DG+++ G+   A  +F 
Sbjct: 191 PDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFR 250

Query: 244 RM-----------------------------------PNRNLVSWN-----AMINGYMKA 263
            M                                    N   V  N     A+I+ Y K 
Sbjct: 251 WMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKC 310

Query: 264 GDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSAL 323
           G ++ A  +F+ +  +D++ WN+MI GY ++G   +ALE+   +    + P D T +  L
Sbjct: 311 GSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLL 370

Query: 324 SAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVG 383
           +A +           HS +V  G            Q +    S+E    +       K+ 
Sbjct: 371 NACS-----------HSGLVDEGH-----------QFFQ---SMEEEYAIV-----PKIE 400

Query: 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNAC 427
           H+  M+  LG  G+  +A  L   M    + P  + ++ +L AC
Sbjct: 401 HYGCMVDLLGRAGLIEEAFHLVQSMT---IAPDTVMWVSLLAAC 441


>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
          Length = 649

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 243/646 (37%), Positives = 367/646 (56%), Gaps = 43/646 (6%)

Query: 84  HPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQ 143
           H   +L  +  +C V  +   +A+  +  +L R  +PD +T P ++K  AR  +    + 
Sbjct: 7   HARRLLEGIPRRCLVAAR--EDAVAGYARMLARGAMPDAYTFPPLLKAVARGSSAAPVRA 64

Query: 144 IHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVK--- 200
           +H  V K G G +  V +SLV+ YA  G+    R +    +    V WN LI G+ +   
Sbjct: 65  VHAHVVKFGMGRNAHVATSLVTAYAAGGDGAAARALLSERERDTPVVWNALISGHNRCRR 124

Query: 201 ---------------------------------KGEVEVAMKLFDEMPDR----DLFSWT 223
                                             G+V + M++   +       DL    
Sbjct: 125 FGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDVLLGMQVHGRVVGSGVLPDLRVEN 184

Query: 224 CLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLIT 283
            LVD +++C  +E A ++F  M  R++VSW ++++G  + G VD A +LF  M  RD ++
Sbjct: 185 ALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLTRLGRVDEARDLFGRMPERDTVS 244

Query: 284 WNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIV 343
           W +MI GY    RF EALE+   M   +V  ++ T+VS ++A A L  L  G W+  Y+ 
Sbjct: 245 WTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMVSVITACAQLGALEMGEWVRVYMS 304

Query: 344 KNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALD 403
           + G  +D  +G  LI MYSKCGSIE AL VF+ +  +    WTA+I+GL ++G   +A++
Sbjct: 305 RQGIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHRDKFTWTAIILGLAVNGYGEEAIE 364

Query: 404 LFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDIL 463
           +F++M  +   P  +TFIGVL AC+HAGLV+ GR +F  M   Y I P + HYGC++D+ 
Sbjct: 365 MFHRMIGVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMRETYNIAPNVVHYGCIIDLF 424

Query: 464 CRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYV 523
            R G + EA   I+ MPM PN  IW +LL+  R HGN +IGE     L+++ P+    Y 
Sbjct: 425 GRAGKITEALDAIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVTERLLQMDPENSTVYT 484

Query: 524 VLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHS 583
           +LSNIYA   +W+ V  +R  + ++G +K+PG S IE  G++HEFV GD+SHP + EI+ 
Sbjct: 485 LLSNIYAKCNRWEDVRRLRHTIMEKGIKKEPGCSLIEMNGIIHEFVAGDQSHPMSKEIYC 544

Query: 584 KLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIV 643
           KL  + N L   G+ PD T+V +    ++EK+  L  HSE+LAIAF L++ +  + IRIV
Sbjct: 545 KLESIINDLNNVGYFPDVTEVFV-EVAEEEKQKVLFWHSEKLAIAFALLSSEPNTVIRIV 603

Query: 644 KNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           KNLR+C DCH+  KL+S +Y RE++VRD +RFHHF++G CSCKD+W
Sbjct: 604 KNLRMCLDCHNAIKLISRLYGREVVVRDRTRFHHFRHGFCSCKDYW 649


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 241/628 (38%), Positives = 365/628 (58%), Gaps = 10/628 (1%)

Query: 70  NLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVI 129
           N+  AR +FD I     +V +  ++ CY  N    E+L LF  +      P+NFT+   +
Sbjct: 186 NVDVARHVFDDICC-KDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGAL 244

Query: 130 KGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLV 189
           K    L A   GK +HG   K  +  D FV  +L+ +YAK GEI   +R+F+ M   DL+
Sbjct: 245 KSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLI 304

Query: 190 SWNCLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRM 245
            W+ +I  Y +    + A+ LF  M    +    F++  ++   +    +++ ++I   +
Sbjct: 305 PWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCV 364

Query: 246 P----NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEAL 301
                N N+   NA+++ Y K G+++++ +LF+++  R+ +TWN++I GY   G    A+
Sbjct: 365 LKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAM 424

Query: 302 ELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMY 361
            L   ML  D+ P + T  S L A A LA L  G  +HS  +K  +  D V+   LI MY
Sbjct: 425 NLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVVANSLIDMY 484

Query: 362 SKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFI 421
           +KCG I  A   F  ++K+    W AMI G  MHGM+ +AL+LF+ M     KP  +TF+
Sbjct: 485 AKCGRINDARLTFDKMNKRDEVSWNAMICGYSMHGMSMEALNLFDMMQHTDCKPNKLTFV 544

Query: 422 GVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPM 481
           GVL+ACS+AGL+  G+ +F  M  DY I+P IEHY C+V +L R G  +EA   I  +  
Sbjct: 545 GVLSACSNAGLLYKGQAHFESMSKDYDIKPCIEHYTCMVWLLGRLGRFDEAMKLIGEIAY 604

Query: 482 RPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEV 541
           +P+ ++W +LL     H   D+G   A +++++ P     +V+LSN+YA AG+WD V+ V
Sbjct: 605 QPSVMVWRALLGACVIHKKVDLGRVCAQHVLEMEPHDDATHVLLSNMYATAGRWDNVAFV 664

Query: 542 REMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDT 601
           R+ M+K+  RK+PG S +E++GV+H F VGD SHP    I + L  +  K + AG+VPD 
Sbjct: 665 RKYMQKKKVRKEPGLSWVENQGVVHYFSVGDTSHPDIKLICAMLEWLNKKTRDAGYVPDC 724

Query: 602 TQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSG 661
             VLL ++D  EKE  L  HSERLA+A+GLI       IRI+KNLR+C DCH+V KL+S 
Sbjct: 725 NAVLLDVQDD-EKERHLWVHSERLALAYGLIRTPLSCSIRIIKNLRICIDCHTVMKLISK 783

Query: 662 IYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           +  REI++RD +RFHHF++G CSC D+W
Sbjct: 784 VVQREIVIRDINRFHHFRHGVCSCGDYW 811



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 98/377 (25%), Positives = 182/377 (48%), Gaps = 13/377 (3%)

Query: 141 GKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVK 200
           GK +H  + K G   D F  + L++ Y +   +    ++FD M   + +S+  L  GY +
Sbjct: 54  GKHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSR 113

Query: 201 KGEVEVAM----KLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREI---FYRMPNR-NLVS 252
             +   A+    ++F E  + + F +T L+          +   +    Y++ +  +   
Sbjct: 114 DHQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFV 173

Query: 253 WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDV 312
             A+I+ Y   G+VD A  +FDD+  +D+++W  M+A Y  N  + E+L+L   M I   
Sbjct: 174 GTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGY 233

Query: 313 LPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALT 372
            PN+ T+  AL +  GL   N G+ +H   +K  +  D  +G  L+++Y+K G I  A  
Sbjct: 234 KPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQR 293

Query: 373 VFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGL 432
           +F  + K  +  W+ MI        + +ALDLF +M +  + P   TF  VL AC+ +  
Sbjct: 294 LFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVS 353

Query: 433 VNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLL 492
           ++ G++  + ++  +G+   +     ++D+  + G +E +    E +P R N V W +++
Sbjct: 354 LDLGKQIHSCVLK-FGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDR-NDVTWNTII 411

Query: 493 SGARNHGNKDIGEYAAN 509
            G    G+   GE A N
Sbjct: 412 VGYVQLGD---GERAMN 425


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 242/616 (39%), Positives = 361/616 (58%), Gaps = 9/616 (1%)

Query: 82  LQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEG 141
           +  P +V +N +I   V ++++  AL L   +    + P  FTL   +K  A +G +K G
Sbjct: 249 IPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLG 308

Query: 142 KQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKK 201
           +Q+H  + K+    D FV   L+ MY+K G +   R VFD M  KD++ WN +I GY   
Sbjct: 309 RQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNC 368

Query: 202 GEVEVAMKLFDEMPDRDL-FSWTCL------VDGFSKCGKVEIAREIFYRMPNR-NLVSW 253
           G    AM LF  M    L F+ T L        G    G  E    I  +   + +    
Sbjct: 369 GYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYVA 428

Query: 254 NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL 313
           N++++ Y K   ++ A ++F+     DL+ + SMI  Y   G   EAL++   M   D+ 
Sbjct: 429 NSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIK 488

Query: 314 PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTV 373
           P+     S  +A A L+   +G+ +H +++K G + D   G  L+ MY+KCGSI+ A  +
Sbjct: 489 PDAFIFSSLFNACANLSAYEQGKQIHVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDASCI 548

Query: 374 FRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLV 433
           F  IS + +  W+AMI GL  HG   +AL LF +M + G+ P  IT + VL+AC+HAGLV
Sbjct: 549 FNEISWRGIVSWSAMIGGLAQHGHGRKALQLFYQMLKNGILPNHITLVSVLSACNHAGLV 608

Query: 434 NDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLS 493
            + RR+F +M   +GI PT EHY C+VDIL R G L+EA   ++ MP + +  +W +LL 
Sbjct: 609 TEARRFFGLMEKLFGITPTQEHYACMVDILGRVGRLDEAMVLVKEMPFQASAAVWGALLG 668

Query: 494 GARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKD 553
            AR H N ++G +AA  L+ + P+  G +++L+NIYA+ G WD V++VR  MK    +K+
Sbjct: 669 AARIHKNIELGRHAAEMLLTLEPEKSGTHILLANIYASTGMWDNVAKVRRSMKNSLVKKE 728

Query: 554 PGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKE 613
           PG S IE +  ++ F+VGD+SHP++ EI+ KL ++R +L +AG+VP     L  +E Q E
Sbjct: 729 PGMSWIELKDKVYTFIVGDRSHPRSKEIYVKLDDLRERLTSAGYVPMIETDLHDVE-QIE 787

Query: 614 KEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNS 673
           KE  L +HSE+LA+AFGLI     +PIR+ KNLRVC DCH+  K +S + +REIIVRD +
Sbjct: 788 KEQLLWHHSEKLAVAFGLIATPPGAPIRVKKNLRVCIDCHTAFKFISKVASREIIVRDIN 847

Query: 674 RFHHFKNGSCSCKDFW 689
           RFHHF++GSCSC D+W
Sbjct: 848 RFHHFRDGSCSCGDYW 863



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 105/402 (26%), Positives = 195/402 (48%), Gaps = 10/402 (2%)

Query: 107 LTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSM 166
           + L  +++   + P+ F+L  V+   A L     G ++HG + KLG+  D F  ++L+ M
Sbjct: 173 VALVTEMISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANALLDM 232

Query: 167 YAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD----RDLFSW 222
           YAK G  +    VF  +   D+VSWN +I G V   + ++A+KL  +M        +F+ 
Sbjct: 233 YAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTL 292

Query: 223 TCLVDGFSKCGKVEIAREIFYRMPNRNLVSWN----AMINGYMKAGDVDSACELFDDMEI 278
           +  +   +  G V++ R++   +   ++   +     +I+ Y K G +  A  +FD M  
Sbjct: 293 SSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPX 352

Query: 279 RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWM 338
           +D+I WNS+I+GY   G  +EA+ L   M    +  N  TL + L + AG         +
Sbjct: 353 KDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGFCEQV 412

Query: 339 HSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMA 398
           H+  +K+G+  DG +   L+  Y KC  +E A  VF     + +  +T+MI     +G+ 
Sbjct: 413 HTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLG 472

Query: 399 TQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGC 458
            +AL ++ +M    +KP A  F  + NAC++      G++  ++ +   G+   +     
Sbjct: 473 EEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQ-IHVHVLKCGLLSDVFAGNS 531

Query: 459 LVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGN 500
           LV++  + G +++A      +  R   V W +++ G   HG+
Sbjct: 532 LVNMYAKCGSIDDASCIFNEISWR-GIVSWSAMIGGLAQHGH 572



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/283 (30%), Positives = 147/283 (51%), Gaps = 11/283 (3%)

Query: 226 VDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEI----RDL 281
           V+ +SKC    +AR++       +LVSW+A+I+GY++ G  + A   + +M +     + 
Sbjct: 89  VNLYSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNE 148

Query: 282 ITWNSMIAGYELN-----GRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGR 336
            T++S++ G  L      G+ +  + L+  M+   + PN+ +L + L+A AGL   N G 
Sbjct: 149 FTFSSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGM 208

Query: 337 WMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHG 396
            +H Y++K G+  D      L+ MY+K G  E+A+ VF  I K  +  W A+I G  +H 
Sbjct: 209 KVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHE 268

Query: 397 MATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHY 456
               AL L  KM    + P+  T    L AC+  GLV  GR+  + ++    +EP     
Sbjct: 269 KNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMK-MDMEPDSFVG 327

Query: 457 GCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
             L+D+  + G L++A+   + MP + + ++W S++SG  N G
Sbjct: 328 VGLIDMYSKCGLLQDARMVFDLMPXK-DVIVWNSIISGYSNCG 369



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 182/371 (49%), Gaps = 13/371 (3%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           K  +QLH+  +K ++   S +   L+ +Y    +  L  AR +FD ++    ++++N +I
Sbjct: 306 KLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGL--LQDARMVFD-LMPXKDVIVWNSII 362

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
             Y       EA++LF ++    L  +  TL  ++K  A   A    +Q+H +  K G+ 
Sbjct: 363 SGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQ 422

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
           +D +V +SL+  Y K   ++   +VF+    +DLV++  +I  Y + G  E A+K++  M
Sbjct: 423 YDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRM 482

Query: 215 PDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS----WNAMINGYMKAGDV 266
            DRD+    F ++ L +  +     E  ++I   +    L+S     N+++N Y K G +
Sbjct: 483 QDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCGLLSDVFAGNSLVNMYAKCGSI 542

Query: 267 DSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326
           D A  +F+++  R +++W++MI G   +G   +AL+L   ML   +LPN  TLVS LSA 
Sbjct: 543 DDASCIFNEISWRGIVSWSAMIGGLAQHGHGRKALQLFYQMLKNGILPNHITLVSVLSAC 602

Query: 327 AGLAVLNKGRWMHSYIVK-NGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS-KKKVGH 384
               ++ + R     + K  G          ++ +  + G ++ A+ + + +  +     
Sbjct: 603 NHAGLVTEARRFFGLMEKLFGITPTQEHYACMVDILGRVGRLDEAMVLVKEMPFQASAAV 662

Query: 385 WTAMIVGLGMH 395
           W A++    +H
Sbjct: 663 WGALLGAARIH 673



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 115/448 (25%), Positives = 201/448 (44%), Gaps = 69/448 (15%)

Query: 164 VSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM----PDRDL 219
           V++Y+K     + R++     + DLVSW+ LI GYV+ G  E A+  + EM       + 
Sbjct: 89  VNLYSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNE 148

Query: 220 FSWTCLVDGFSKCGKVEIAREIFYRM------------PNR------------------- 248
           F+++ ++ G S    +E+ ++I +R+            PN                    
Sbjct: 149 FTFSSVLKGCSLTRNLELGKQI-HRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYG 207

Query: 249 --------------NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELN 294
                         +  S NA+++ Y K+G  ++A  +F ++   D+++WN++IAG  L+
Sbjct: 208 MKVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLH 267

Query: 295 GRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLG 354
            +   AL+LL  M    V P+  TL SAL A A + ++  GR +HS ++K     D  +G
Sbjct: 268 EKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVG 327

Query: 355 TLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMK 414
             LI MYSKCG ++ A  VF  +  K V  W ++I G    G   +A+ LF  M + G++
Sbjct: 328 VGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLE 387

Query: 415 PTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYG----CLVDILCRTGYLE 470
               T   +L   S AG   +G   F   ++   I+   ++ G     L+D   +   LE
Sbjct: 388 FNQTTLSTILK--STAGSQANG---FCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLE 442

Query: 471 EAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIK-----VAPDTIGCYVVL 525
           +A    E  P   + V + S+++    +G   +GE A    ++     + PD    +  L
Sbjct: 443 DAAKVFEVCPAE-DLVAYTSMITAYSQYG---LGEEALKMYLRMQDRDIKPDAF-IFSSL 497

Query: 526 SNIYAAAGQWDKVSEVREMMKKRGFRKD 553
            N  A    +++  ++   + K G   D
Sbjct: 498 FNACANLSAYEQGKQIHVHVLKCGLLSD 525


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 249/664 (37%), Positives = 388/664 (58%), Gaps = 16/664 (2%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVD-PHINNLHYARSIFDRILQHPSLVLYNLL 93
           K+ +++H L +      +  + + ++SLY     I+N   A  +F+R +QH  LV +  L
Sbjct: 162 KKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDN---AYKMFER-MQHKDLVSWTTL 217

Query: 94  IKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGF 153
           +  Y  N  +  AL L   + +    PD+ TL  ++   A + A++ G+ IHG  F+ GF
Sbjct: 218 VAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGF 277

Query: 154 GFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDE 213
                V ++L+ MY K G   + R VF  M  K +VSWN +IDG  + GE E A   F +
Sbjct: 278 ESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLK 337

Query: 214 MPDR-DLFSWTCLVDGFSKCGKV-EIAREIF-YRMPNR-----NLVSWNAMINGYMKAGD 265
           M D  ++ +   ++     C  + ++ R  F +++ ++     N+   N++I+ Y K   
Sbjct: 338 MLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKR 397

Query: 266 VDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSA 325
           VD A  +F+++E  + +TWN+MI GY  NG   EAL L   M    +  +  TLV  ++A
Sbjct: 398 VDIAASIFNNLEKTN-VTWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITA 456

Query: 326 VAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHW 385
           +A  +V  + +W+H   V+     +  + T L+ MY+KCG+I++A  +F  + ++ V  W
Sbjct: 457 LADFSVNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQERHVITW 516

Query: 386 TAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN 445
            AMI G G HG+  + LDLFN+M +  +KP  ITF+ V++ACSH+G V +G   F  M  
Sbjct: 517 NAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISACSHSGFVEEGLLLFKSMQE 576

Query: 446 DYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGE 505
           DY +EPT++HY  +VD+L R G L++A + I+ MP++P   +  ++L   + H N ++GE
Sbjct: 577 DYYLEPTMDHYSAMVDLLGRAGQLDDAWNFIQEMPIKPGISVLGAMLGACKIHKNVELGE 636

Query: 506 YAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVL 565
            AA  L K+ PD  G +V+L+NIYA+   WDKV++VR  M+ +G  K PG S +E R  +
Sbjct: 637 KAAQKLFKLDPDEGGYHVLLANIYASNSMWDKVAKVRTAMEDKGLHKTPGCSWVELRNEI 696

Query: 566 HEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERL 625
           H F  G  +HP++ +I++ L  + +++KAAG+VPD   +    ED K++   L +HSERL
Sbjct: 697 HTFYSGSTNHPESKKIYAFLETLGDEIKAAGYVPDPDSIHDVEEDVKKQ--LLSSHSERL 754

Query: 626 AIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSC 685
           AIAFGL+N    + + I KNLRVC DCH  TK +S +  REIIVRD  RFHHFKNGSCSC
Sbjct: 755 AIAFGLLNTSPGTTLHIRKNLRVCGDCHDTTKYISLVTGREIIVRDLRRFHHFKNGSCSC 814

Query: 686 KDFW 689
            D+W
Sbjct: 815 GDYW 818



 Score =  178 bits (451), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 138/507 (27%), Positives = 244/507 (48%), Gaps = 31/507 (6%)

Query: 8   HSSPIHALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPH 67
           +S P        PS +   +L+  ++ KE  Q+    +K          ++++SL+    
Sbjct: 37  NSIPTRVYSHRHPSVV---LLENCTSKKELYQILPFIIKNGFYNEHLFQTKVISLFCKFG 93

Query: 68  INNLHYARSIFDRILQHPSL---VLYNLLIKCYVFNQRSHEALTLF----CDLLDRFLLP 120
            N      S   R+ +H  L   VLY++++K Y  N    +AL  F    CD + R ++ 
Sbjct: 94  SN------SEAARVFEHVELKLDVLYHIMLKGYAKNSSLGDALCFFLRMMCDEV-RLVVG 146

Query: 121 DNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVF 180
           D     C+++       +K+G++IHGL+   GF  + FV+++++S+YAK  +ID   ++F
Sbjct: 147 D---YACLLQLCGENLDLKKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMF 203

Query: 181 DAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVE 236
           + M  KDLVSW  L+ GY + G  + A++L  +M +     D  +   ++   +    + 
Sbjct: 204 ERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALR 263

Query: 237 IAREIF---YRMPNRNLVS-WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYE 292
           I R I    +R    +LV+  NA+++ Y K G    A  +F  M  + +++WN+MI G  
Sbjct: 264 IGRSIHGYAFRSGFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCA 323

Query: 293 LNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV 352
            NG   EA      ML    +P   T++  L A A L  L +G ++H  + K     +  
Sbjct: 324 QNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVS 383

Query: 353 LGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG 412
           +   LI MYSKC  ++ A ++F  + K  V  W AMI+G   +G   +AL+LF  M   G
Sbjct: 384 VMNSLISMYSKCKRVDIAASIFNNLEKTNVT-WNAMILGYAQNGCVKEALNLFCMMQSQG 442

Query: 413 MKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEA 472
           +K    T +GV+ A +    VN   ++ + +     ++  +     LVD+  + G ++ A
Sbjct: 443 IKLDCFTLVGVITALADFS-VNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTA 501

Query: 473 KSTIESMPMRPNFVIWMSLLSGARNHG 499
           +   + M  R + + W +++ G   HG
Sbjct: 502 RKLFDMMQER-HVITWNAMIDGYGTHG 527


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 242/657 (36%), Positives = 391/657 (59%), Gaps = 16/657 (2%)

Query: 40  LHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVF 99
           +  + +K ++I ++G    LLS+Y     N L   R IFD+++   + V +N +I  Y  
Sbjct: 301 IEKIGIKKDVIVNNG----LLSMYC--KFNGLIDGRRIFDKMVLRDA-VSWNTMICGYSQ 353

Query: 100 NQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFV 159
                E++ LF +++++F  PD  T+  +++    LG ++ GK +H  +   G+  D   
Sbjct: 354 VGLYEESIKLFMEMVNQFK-PDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTA 412

Query: 160 LSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP---D 216
            + L++MYAK G +   + VF  M  KD VSWN +I+ Y++ G  + AMKLF  M     
Sbjct: 413 SNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTDVK 472

Query: 217 RDLFSWTCLVDGFSKCGKVEIAREIFYRMP----NRNLVSWNAMINGYMKAGDVDSACEL 272
            D  ++  L+   ++ G + + +E+   +     N N+V  N +++ Y K G++  + ++
Sbjct: 473 PDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKV 532

Query: 273 FDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVL 332
           F++M+ RD+ITWN++IA    +      L ++  M    V P+ AT++S L   + LA  
Sbjct: 533 FENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAK 592

Query: 333 NKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGL 392
            +G+ +H  I K G   D  +G +LI+MYSKCGS+ ++  VF+ +  K V  WTA+I   
Sbjct: 593 RQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISAC 652

Query: 393 GMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT 452
           GM+G   +A+  F +M   G+ P  + F+ ++ ACSH+GLV +G  YF+ M  DY IEP 
Sbjct: 653 GMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPR 712

Query: 453 IEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLI 512
           IEHY C+VD+L R+  L++A+  I SMP++P+  IW +LLS  R  G+ +I +  +  +I
Sbjct: 713 IEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAQRVSERII 772

Query: 513 KVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGD 572
           ++ PD  G YV++SN+YAA G+WD+V  +R+ +K RG +KDPG S +E +  ++ F  G 
Sbjct: 773 ELNPDDTGYYVLVSNVYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGT 832

Query: 573 KSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLI 632
           K   Q +E++  L  +   +   G++ +   VL  I D+ EK   L  HSERLAIAFGL+
Sbjct: 833 KFSEQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDI-DEDEKRDILCGHSERLAIAFGLL 891

Query: 633 NVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           N K  +P++++KNLRVC DCH+VTK +S I  RE++VRD +RFH FK+G+CSC D+W
Sbjct: 892 NTKPGTPLQVMKNLRVCEDCHTVTKYISKIXQRELLVRDANRFHVFKDGACSCGDYW 948



 Score =  205 bits (521), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 140/480 (29%), Positives = 238/480 (49%), Gaps = 15/480 (3%)

Query: 55  ISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL 114
           I + L+ +Y     N+L  AR +F+  +    +V +N LI  Y  N   +EAL ++    
Sbjct: 211 IGNALIDMYC--RFNDLDKARKVFEE-MPLRDVVSWNSLISGYNANGYWNEALEIYYRFR 267

Query: 115 DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEID 174
           +  ++PD++T+  V++    LG+++EG  IHGL+ K+G   D  V + L+SMY KF  + 
Sbjct: 268 NLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLI 327

Query: 175 LGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR---DLFSWTCLVDGFSK 231
            GRR+FD M  +D VSWN +I GY + G  E ++KLF EM ++   DL + T ++     
Sbjct: 328 DGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQFKPDLLTITSILQACGH 387

Query: 232 CGKVEIAREIFYRMPNR----NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSM 287
            G +E  + +   M       +  + N +IN Y K G++ ++ E+F  M+ +D ++WNSM
Sbjct: 388 LGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSM 447

Query: 288 IAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGF 347
           I  Y  NG F EA++L + M+  DV P+  T V  LS    L  L  G+ +H  + K GF
Sbjct: 448 INVYIQNGSFDEAMKLFK-MMKTDVKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGF 506

Query: 348 VVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNK 407
             + V+   L+ MY+KCG +  +L VF  +  + +  W  +I            L + ++
Sbjct: 507 NSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISR 566

Query: 408 MCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTG 467
           M   G+ P   T + +L  CS       G+   +  I   G+E  +     L+++  + G
Sbjct: 567 MRTEGVTPDMATMLSILPVCSLLAAKRQGKE-IHGCIFKLGLESDVPVGNVLIEMYSKCG 625

Query: 468 YLEEAKSTIESMPMRPNFVIWMSLLS--GARNHGNKDIGEYAANNLIKVAPDTIGCYVVL 525
            L  +    + M  + + V W +L+S  G    G K +  +       + PD +    ++
Sbjct: 626 SLRNSFQVFKLMKTK-DVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAII 684



 Score =  192 bits (487), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 127/485 (26%), Positives = 244/485 (50%), Gaps = 14/485 (2%)

Query: 28  LKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSL 87
           L  ++T  +  +LH+L +   L +    S++L++ Y   H  +   + S+F       ++
Sbjct: 82  LASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYA--HFRDPTSSFSVFRLASPSNNV 139

Query: 88  VLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGL 147
             +N +I+    N    EAL+L+ +     L PD +T P VI   A L   +  K IH  
Sbjct: 140 YXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDR 199

Query: 148 VFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVA 207
           V  +GFG D ++ ++L+ MY +F ++D  R+VF+ M  +D+VSWN LI GY   G    A
Sbjct: 200 VLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEA 259

Query: 208 MKLFDEMPD----RDLFSWTCLVDGFSKCGKVE---IAREIFYRMP-NRNLVSWNAMING 259
           ++++    +     D ++ + ++      G VE   I   +  ++   ++++  N +++ 
Sbjct: 260 LEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSM 319

Query: 260 YMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATL 319
           Y K   +     +FD M +RD ++WN+MI GY   G + E+++L   M +    P+  T+
Sbjct: 320 YCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEM-VNQFKPDLLTI 378

Query: 320 VSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK 379
            S L A   L  L  G+++H Y++ +G+  D     +LI MY+KCG++ ++  VF  +  
Sbjct: 379 TSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKC 438

Query: 380 KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRY 439
           K    W +MI     +G   +A+ LF KM +  +KP ++T++ +L+  +  G +  G+  
Sbjct: 439 KDSVSWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGDLXLGKE- 496

Query: 440 FNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
            +  +   G    I     LVD+  + G + ++    E+M  R + + W ++++   +  
Sbjct: 497 LHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKAR-DIITWNTIIASCVHSE 555

Query: 500 NKDIG 504
           + ++G
Sbjct: 556 DCNLG 560



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 111/440 (25%), Positives = 197/440 (44%), Gaps = 22/440 (5%)

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFD-AMDDK 186
           + +  A      +  ++H L+  LG        + L++ YA F +      VF  A    
Sbjct: 78  ISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPSN 137

Query: 187 DLVSWNCLIDGYVKKGEVEVAMKLFDEMP----DRDLFSWTCLVDGFSKCGKVEIAREIF 242
           ++  WN +I      G    A+ L+ E        D +++  +++  +     E+A+ I 
Sbjct: 138 NVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIH 197

Query: 243 YRMP----NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFM 298
            R+       +L   NA+I+ Y +  D+D A ++F++M +RD+++WNS+I+GY  NG + 
Sbjct: 198 DRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWN 257

Query: 299 EALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLI 358
           EALE+        V+P+  T+ S L A  GL  + +G  +H  I K G   D ++   L+
Sbjct: 258 EALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLL 317

Query: 359 QMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI 418
            MY K   +     +F  +  +    W  MI G    G+  +++ LF +M     KP  +
Sbjct: 318 SMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ-FKPDLL 376

Query: 419 TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIES 478
           T   +L AC H G +  G+   + MI   G E        L+++  + G L  ++     
Sbjct: 377 TITSILQACGHLGDLEFGKYVHDYMITS-GYECDTTASNILINMYAKCGNLLASQEVFSG 435

Query: 479 MPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIK-----VAPDTIGCYVVLSNIYAAAG 533
           M  + + V W S+++    +G+ D     A  L K     V PD++  YV+L ++    G
Sbjct: 436 MKCKDS-VSWNSMINVYIQNGSFD----EAMKLFKMMKTDVKPDSV-TYVMLLSMSTQLG 489

Query: 534 QWDKVSEVREMMKKRGFRKD 553
                 E+   + K GF  +
Sbjct: 490 DLXLGKELHCDLAKMGFNSN 509



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 147/323 (45%), Gaps = 39/323 (12%)

Query: 254 NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMI---------------AGYELNGRFM 298
           N  I G ++    D++C  +D   I++L    S +                  +L  R M
Sbjct: 3   NKTIGGCIRTPCPDASCRYYD--WIKNLYELKSRVHSSGNYVDHQRREFYTSTKLFSRVM 60

Query: 299 EALELLETMLIGDVLPNDATLVSALS-AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLL 357
           + L +L          +  TL S++S A+A  A   +   +HS I+  G     +    L
Sbjct: 61  KTLRVLHEC-------SRQTLFSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKL 113

Query: 358 IQMYSKCGSIESALTVFR-AISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT 416
           I  Y+      S+ +VFR A     V  W ++I  L  +G+ ++AL L+++  R+ ++P 
Sbjct: 114 IAKYAHFRDPTSSFSVFRLASPSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPD 173

Query: 417 AITFIGVLNACSHAGLVN-DGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKST 475
             TF  V+NAC  AGL++ +  +  +  +   G    +     L+D+ CR   L++A+  
Sbjct: 174 TYTFPSVINAC--AGLLDFEMAKSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKV 231

Query: 476 IESMPMRPNFVIWMSLLSGARNHG--NKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAG 533
            E MP+R + V W SL+SG   +G  N+ +  Y     + V PD+      +S++  A G
Sbjct: 232 FEEMPLR-DVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDS----YTMSSVLRACG 286

Query: 534 QWDKVSE---VREMMKKRGFRKD 553
               V E   +  +++K G +KD
Sbjct: 287 GLGSVEEGDIIHGLIEKIGIKKD 309


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 250/693 (36%), Positives = 384/693 (55%), Gaps = 76/693 (10%)

Query: 71  LHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIK 130
           L  A  +F+  +  P  V +  +I  Y    +   A+ +F +++   + P  FTL  V+ 
Sbjct: 95  LEEAHRVFEE-MPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNVLA 153

Query: 131 GAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGE------------------ 172
             A +  +  G+++H  V K G      V +SL++MYAK G+                  
Sbjct: 154 SCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKSTSS 213

Query: 173 -------------IDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM----- 214
                        +DL +  F+ M ++D+VSWN +I GY + G    A+ +F +M     
Sbjct: 214 WNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSS 273

Query: 215 --PDR-------------------------------DLFSWT--CLVDGFSKCGKVEIAR 239
             PD+                               D F      L+  +SK G VEIA+
Sbjct: 274 SKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQ 333

Query: 240 EIFYR--MPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRF 297
           +I  +  + N +++++ A+++GY+K GD++ A  +FD + +RD++ W +MI GY  NG  
Sbjct: 334 KIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFN 393

Query: 298 MEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLL 357
            +A+EL  +M+     PN+ TL + LS  + LA L+ GR +H+   ++G      +   L
Sbjct: 394 QDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASATRSGNASSVSVSNAL 453

Query: 358 IQMYSKCGSIESALTVFRAIS-KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT 416
           I MY+K GSI  A  VF  I  K+    WT+MI+ L  HG+  +AL LF +M   G+KP 
Sbjct: 454 ITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFERMLENGIKPD 513

Query: 417 AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTI 476
            IT++GVL+AC+H GLV  GR Y+N+M N + I PT  HY C++D+  R G L+EA + I
Sbjct: 514 HITYVGVLSACTHVGLVEQGRSYYNLMQNAHKIIPTPSHYACMIDLFGRAGLLQEAHAFI 573

Query: 477 ESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWD 536
           E+MP+ P+ + W SLL+  + H N ++ E AA  L+ + P+  G Y  L+N+Y+A GQW+
Sbjct: 574 ENMPIEPDVIAWGSLLASCKVHKNVELAEVAAERLLLIEPENSGAYSALANVYSACGQWE 633

Query: 537 KVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAG 596
             + +R+ MK +G +KD G S ++ +  +H F V D  HPQ D I+  ++++  ++K  G
Sbjct: 634 NAANIRKSMKDKGVKKDQGFSWVQIKNKVHIFGVDDGLHPQRDAIYEMMAKIWKEIKKMG 693

Query: 597 HVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVT 656
            VPDT  VL  +E++  KE  L +HSE+LAIAFGLI     + +RI+KNLRVCNDCHS  
Sbjct: 694 FVPDTESVLHDLEEEL-KEQILSHHSEKLAIAFGLICTPENTTLRIMKNLRVCNDCHSAI 752

Query: 657 KLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           K +S +  REIIVRD +RFHHFKNG CSC+D+W
Sbjct: 753 KFISKLVGREIIVRDATRFHHFKNGLCSCRDYW 785



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 134/495 (27%), Positives = 216/495 (43%), Gaps = 113/495 (22%)

Query: 141 GKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVK 200
           GK IH  + K G     F++++L++ YAK G I    RVFD M  K + SWN ++ GY K
Sbjct: 32  GKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYAK 91

Query: 201 KGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM------PNR------ 248
            G +E A ++F+EMP+ D  SWT ++ G+++ G+ E A  +F  M      P +      
Sbjct: 92  GGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNV 151

Query: 249 -----------------------NLVSW----NAMINGYMKAGDVDSACELFDDMEI--- 278
                                   L S+    N+++N Y K+GD  +A  +FD M++   
Sbjct: 152 LASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKST 211

Query: 279 ----------------------------RDLITWNSMIAGYELNGRFMEALELLETMLI- 309
                                       RD+++WN+MI+GY  +G   EAL++   ML+ 
Sbjct: 212 SSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMD 271

Query: 310 GDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIE- 368
               P+  TL SALSA A L  L  G+ +H++I++  F   G +G  LI MYSK G +E 
Sbjct: 272 SSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEI 331

Query: 369 --------------------------------SALTVFRAISKKKVGHWTAMIVGLGMHG 396
                                            A  +F ++  + V  WTAMIVG   +G
Sbjct: 332 AQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNG 391

Query: 397 MATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHY 456
               A++LF  M + G KP   T   +L+  S    ++ GR+  +      G   ++   
Sbjct: 392 FNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQ-IHASATRSGNASSVSVS 450

Query: 457 GCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIK--- 513
             L+ +  ++G + +A+     +  + + + W S++     HG   +GE A     +   
Sbjct: 451 NALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHG---LGEEALTLFERMLE 507

Query: 514 --VAPDTIGCYVVLS 526
             + PD I    VLS
Sbjct: 508 NGIKPDHITYVGVLS 522



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 83/357 (23%), Positives = 163/357 (45%), Gaps = 49/357 (13%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLY-----------------------------VDPHI 68
           +Q+HA  ++T       + + L+S+Y                             +D ++
Sbjct: 298 KQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYV 357

Query: 69  N--NLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLP 126
              +++ AR IFD  L+   +V +  +I  YV N  + +A+ LF  ++     P+N+TL 
Sbjct: 358 KLGDINPARRIFDS-LRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLA 416

Query: 127 CVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD-D 185
            ++  ++ L ++  G+QIH    + G      V ++L++MYAK G I+  R VF+ +   
Sbjct: 417 TMLSVSSSLASLDHGRQIHASATRSGNASSVSVSNALITMYAKSGSINDARWVFNLIHWK 476

Query: 186 KDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREI 241
           +D ++W  +I    + G  E A+ LF+ M +     D  ++  ++   +  G VE  R  
Sbjct: 477 RDTITWTSMIIALAQHGLGEEALTLFERMLENGIKPDHITYVGVLSACTHVGLVEQGRSY 536

Query: 242 FYRMPNRNLV-----SWNAMINGYMKAGDVDSACELFDDMEIR-DLITWNSMIAGYELNG 295
           +  M N + +      +  MI+ + +AG +  A    ++M I  D+I W S++A  +++ 
Sbjct: 537 YNLMQNAHKIIPTPSHYACMIDLFGRAGLLQEAHAFIENMPIEPDVIAWGSLLASCKVHK 596

Query: 296 RFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV 352
               A    E +L+  + P ++   SAL+ V        G+W ++  ++      GV
Sbjct: 597 NVELAEVAAERLLL--IEPENSGAYSALANVYSAC----GQWENAANIRKSMKDKGV 647


>gi|222641236|gb|EEE69368.1| hypothetical protein OsJ_28705 [Oryza sativa Japonica Group]
          Length = 662

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 239/569 (42%), Positives = 334/569 (58%), Gaps = 8/569 (1%)

Query: 124 TLPCVIKGAAR-LGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDA 182
           T  C++ G AR LG + + + +    F      D    ++L+S +   G+ D  RR+F +
Sbjct: 99  TYNCLLAGYARALGRLADARHL----FDRIPTPDAVSYNTLLSCHFASGDADGARRLFAS 154

Query: 183 MDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIF 242
           M  +D+VSWN ++ G  K G VE A  +F  MP R+  SW  +V GF+    +  A E F
Sbjct: 155 MPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVSWNAMVSGFACSRDMSAAEEWF 214

Query: 243 YRMPNR-NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEAL 301
              P + + V W AM++GYM  G+V  A E F+ M +R+L++WN+++AGY  N    +AL
Sbjct: 215 RNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDAL 274

Query: 302 ELLETMLI-GDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQM 360
            L  TM+   +V PN +TL S L   + L+ L  G+ +H + +K     +  +GT L+ M
Sbjct: 275 RLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSM 334

Query: 361 YSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITF 420
           Y KCG + SA  +F  +  + V  W AMI G   HG   +A++LF +M   G++P  ITF
Sbjct: 335 YCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITF 394

Query: 421 IGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP 480
           + VL AC H GL + G R F  M   YGIEP ++HY C+VD+LCR G LE A   I SMP
Sbjct: 395 VAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMP 454

Query: 481 MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSE 540
             P+   + +LL+  R + N +  E AA  LI+  P + G YV L+NIYA A QWD VS 
Sbjct: 455 FEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAGANQWDDVSR 514

Query: 541 VREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPD 600
           VR  MK     K PG S IE +GV+HEF   D+ HPQ   IH KL ++  ++KA G+VPD
Sbjct: 515 VRRWMKDNAVVKTPGYSWIEIKGVMHEFRSNDRLHPQLYLIHEKLGQLAERMKAMGYVPD 574

Query: 601 TTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLS 660
              VL  + D+  K   L  HSE+LAI+FGLI+      +RI KNLRVC DCH+  K++S
Sbjct: 575 LDFVLHDV-DETLKVQMLMRHSEKLAISFGLISTAPGMTLRIFKNLRVCGDCHNAAKVIS 633

Query: 661 GIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            I +REII+RD +RFHHF+ G CSC D+W
Sbjct: 634 KIEDREIILRDTTRFHHFRGGHCSCGDYW 662



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 87/299 (29%), Positives = 136/299 (45%), Gaps = 50/299 (16%)

Query: 68  INNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPC 127
           +  L  AR +FDRI   P  V YN L+ C+  +  +  A  LF  +  R    D  +   
Sbjct: 111 LGRLADARHLFDRI-PTPDAVSYNTLLSCHFASGDADGARRLFASMPVR----DVVSWNT 165

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVF-DAMDDK 186
           ++ G ++ GA++E K     VF      +    +++VS +A   ++      F +A +  
Sbjct: 166 MVSGLSKSGAVEEAKA----VFLAMPVRNSVSWNAMVSGFACSRDMSAAEEWFRNAPEKG 221

Query: 187 DLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM- 245
           D V W  ++ GY+  G V  A++ F+ MP R+L SW  +V G+ K    + A  +F  M 
Sbjct: 222 DAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMV 281

Query: 246 ------PN---------------------------------RNLVSWNAMINGYMKAGDV 266
                 PN                                 RNL    ++++ Y K GD+
Sbjct: 282 REANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDL 341

Query: 267 DSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSA 325
            SAC+LF +M  RD++ WN+MI+GY  +G   EA+ L E M    V PN  T V+ L+A
Sbjct: 342 SSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTA 400



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 115/228 (50%), Gaps = 13/228 (5%)

Query: 59  LLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL-DRF 117
           ++S Y+D  I N+  A   F+ +    +LV +N ++  YV N  + +AL LF  ++ +  
Sbjct: 229 MVSGYMD--IGNVVKAIEYFEAMPVR-NLVSWNAVVAGYVKNSHADDALRLFRTMVREAN 285

Query: 118 LLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGR 177
           + P+  TL  V+ G + L A+  GKQIH    KL    +  V +SLVSMY K G++    
Sbjct: 286 VQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSAC 345

Query: 178 RVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL-FSWTCLVDGFSKC---G 233
           ++F  M  +D+V+WN +I GY + G+ + A+ LF+ M D  +  +W   V   + C   G
Sbjct: 346 KLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTG 405

Query: 234 KVEIAREIFYRMP-----NRNLVSWNAMINGYMKAGDVDSACELFDDM 276
             +     F  M         +  ++ M++   +AG ++ A +L   M
Sbjct: 406 LCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSM 453



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 66/304 (21%), Positives = 110/304 (36%), Gaps = 65/304 (21%)

Query: 257 INGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELN-GRFMEALELLETMLIGDVLPN 315
           +   ++ GD+  A E F     +   T+N ++AGY    GR  +A  L + +   D +  
Sbjct: 73  VAAAVRRGDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIPTPDAVSY 132

Query: 316 DA------------------------------TLVSALSAVA----------GLAVLNKG 335
           +                               T+VS LS              + V N  
Sbjct: 133 NTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSV 192

Query: 336 RWMHSYIVKNGFVV------------------DGVLGTLLIQMYSKCGSIESALTVFRAI 377
            W     + +GF                    D VL T ++  Y   G++  A+  F A+
Sbjct: 193 SW---NAMVSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAM 249

Query: 378 SKKKVGHWTAMIVGLGMHGMATQALDLFNKMCR-MGMKPTAITFIGVLNACSHAGLVNDG 436
             + +  W A++ G   +  A  AL LF  M R   ++P A T   VL  CS+   +  G
Sbjct: 250 PVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFG 309

Query: 437 RRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGAR 496
           ++     +    +   +     LV + C+ G L  A      M  R + V W +++SG  
Sbjct: 310 KQIHQWCMK-LPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTR-DVVAWNAMISGYA 367

Query: 497 NHGN 500
            HG+
Sbjct: 368 QHGD 371


>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Glycine max]
          Length = 711

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 241/629 (38%), Positives = 366/629 (58%), Gaps = 13/629 (2%)

Query: 64  VDPHINN--LHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPD 121
           +  HI N  L  AR +FD  +   ++V +  +++ YV N    EA  LF  +  + ++  
Sbjct: 93  ISGHIKNGMLSEARRVFD-TMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKNVV-- 149

Query: 122 NFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFD 181
             +   ++ G  + G + + +++    F +    D   +++++  Y + G +D  R +FD
Sbjct: 150 --SWTVMLGGLLQEGRVDDARKL----FDMMPEKDVVAVTNMIGGYCEEGRLDEARALFD 203

Query: 182 AMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREI 241
            M  +++V+W  ++ GY + G+V+VA KLF+ MP+R+  SWT ++ G++  G++  A  +
Sbjct: 204 EMPKRNVVTWTAMVSGYARNGKVDVARKLFEVMPERNEVSWTAMLLGYTHSGRMREASSL 263

Query: 242 FYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEAL 301
           F  MP + +V  N MI G+   G+VD A  +F  M+ RD  TW++MI  YE  G  +EAL
Sbjct: 264 FDAMPVKPVVVCNEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAMIKVYERKGYELEAL 323

Query: 302 ELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMY 361
            L   M    +  N  +L+S LS    LA L+ G+ +H+ +V++ F  D  + ++LI MY
Sbjct: 324 GLFRRMQREGLALNFPSLISVLSVCVSLASLDHGKQVHAQLVRSEFDQDLYVASVLITMY 383

Query: 362 SKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFI 421
            KCG++  A  VF     K V  W +MI G   HG+  +AL++F+ MC  G+ P  +TFI
Sbjct: 384 VKCGNLVRAKQVFNRFPLKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVPPDDVTFI 443

Query: 422 GVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPM 481
           GVL+ACS++G V +G   F  M   Y +EP IEHY CLVD+L R   + EA   +E MPM
Sbjct: 444 GVLSACSYSGKVKEGLELFETMKCKYQVEPGIEHYACLVDLLGRADQVNEAMKLVEKMPM 503

Query: 482 RPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEV 541
            P+ ++W +LL   R H   D+ E A   L ++ P   G YV+LSN+YA  G+W  V  +
Sbjct: 504 EPDAIVWGALLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSNMYAYKGRWRDVEVL 563

Query: 542 REMMKKRGFRKDPGSSSIEHRGVLHEFVVGD-KSHPQTDEIHSKLSEMRNKLKAAGHVPD 600
           RE +K R   K PG S IE    +H F  GD K HP+   I   L ++   L+ AG+ PD
Sbjct: 564 REKIKARSVTKLPGCSWIEVEKKVHMFTGGDSKGHPEQPIIMKMLEKLGGLLREAGYCPD 623

Query: 601 TTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLS 660
            + VL  + D++EK   L  HSE+LA+A+GL+ V    PIR++KNLRVC DCHS  KL++
Sbjct: 624 GSFVLHDV-DEEEKTHSLGYHSEKLAVAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIA 682

Query: 661 GIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            +  REII+RD +RFHHFK+G CSCKD+W
Sbjct: 683 KVTGREIILRDANRFHHFKDGHCSCKDYW 711



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 139/505 (27%), Positives = 238/505 (47%), Gaps = 69/505 (13%)

Query: 70  NLHYARSIFDRI-LQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCV 128
            L +AR +FD   L H ++  +N ++  Y   ++  EAL LF  +  R  +  N      
Sbjct: 37  QLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKMPQRNTVSWN------ 90

Query: 129 IKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDL 188
                                             L+S + K G +   RRVFD M D+++
Sbjct: 91  ---------------------------------GLISGHIKNGMLSEARRVFDTMPDRNV 117

Query: 189 VSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR 248
           VSW  ++ GYV+ G+V  A +LF  MP +++ SWT ++ G  + G+V+ AR++F  MP +
Sbjct: 118 VSWTSMVRGYVRNGDVAEAERLFWHMPHKNVVSWTVMLGGLLQEGRVDDARKLFDMMPEK 177

Query: 249 NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETML 308
           ++V+   MI GY + G +D A  LFD+M  R+++TW +M++GY  NG+   A +L E   
Sbjct: 178 DVVAVTNMIGGYCEEGRLDEARALFDEMPKRNVVTWTAMVSGYARNGKVDVARKLFE--- 234

Query: 309 IGDVLP--NDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDG-VLGTLLIQMYSKCG 365
              V+P  N+ +  + L     L   + GR   +  + +   V   V+   +I  +   G
Sbjct: 235 ---VMPERNEVSWTAML-----LGYTHSGRMREASSLFDAMPVKPVVVCNEMIMGFGLNG 286

Query: 366 SIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN 425
            ++ A  VF+ + ++  G W+AMI      G   +AL LF +M R G+     + I VL+
Sbjct: 287 EVDKARRVFKGMKERDNGTWSAMIKVYERKGYELEALGLFRRMQREGLALNFPSLISVLS 346

Query: 426 ACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNF 485
            C     ++ G++    ++     +  +     L+ +  + G L  AK      P++ + 
Sbjct: 347 VCVSLASLDHGKQVHAQLVRSE-FDQDLYVASVLITMYVKCGNLVRAKQVFNRFPLK-DV 404

Query: 486 VIWMSLLSGARNHGNKDIGEYAANNL-----IKVAPDTIGCYVVLSNIYAAAGQWDKVSE 540
           V+W S+++G   HG   +GE A N         V PD +    VLS   + +G+  +  E
Sbjct: 405 VMWNSMITGYSQHG---LGEEALNVFHDMCSSGVPPDDVTFIGVLSAC-SYSGKVKEGLE 460

Query: 541 VREMMKKRGFRKDPGSSSIEHRGVL 565
           + E MK + ++ +PG   IEH   L
Sbjct: 461 LFETMKCK-YQVEPG---IEHYACL 481


>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
          Length = 1740

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 243/624 (38%), Positives = 359/624 (57%), Gaps = 43/624 (6%)

Query: 74   ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
             R IFD I +  ++V +N++I+ YV N    +AL +F ++    + PD++T PCV+K ++
Sbjct: 1079 TRHIFDEIPKK-NVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASS 1137

Query: 134  RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
                +  G QIH  V ++G   + FV + L+SMY K G                     C
Sbjct: 1138 GSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCG---------------------C 1176

Query: 194  LIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSW 253
            L++          A ++ DZMP RD+ SW  LV G ++ G+ + A E+   M    L   
Sbjct: 1177 LVE----------ACRVLDZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPD 1226

Query: 254  NAMINGYMKAGDVDSAC--------ELFDDMEIRDLITWNSMIAGYELNGRFMEALELLE 305
               +   + A  V + C        E+F  +  + L++WN MIA Y  N    EA+++  
Sbjct: 1227 AGTMASLLPA--VTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFL 1284

Query: 306  TMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCG 365
             M    V P+  ++ S L A   L+ L  GR +H Y+V+     + +L   LI MY+KCG
Sbjct: 1285 QMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCG 1344

Query: 366  SIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN 425
             +E A  VF  +  + V  WT+MI   GM+G    A+ LF++M  +G+ P +I F+ VL+
Sbjct: 1345 CLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLS 1404

Query: 426  ACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNF 485
            ACSHAGL+++GR YF +M  +  I P IEH+ C+VD+L R G ++EA   I+ MPM PN 
Sbjct: 1405 ACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNE 1464

Query: 486  VIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMM 545
             +W +LLS  R + N  IG  AA+ L ++ P+  G YV+LSNIYA AG+W+ V+ VR +M
Sbjct: 1465 RVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIYAKAGRWEDVTTVRSIM 1524

Query: 546  KKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVL 605
            K +G +K PG S+ E    +H F+ GD+SHPQ+ +I+ +L  +  K+K AG+VP+T   L
Sbjct: 1525 KTKGIKKMPGVSNFELDNRVHTFLAGDQSHPQSKQIYEELDVLVGKMKEAGYVPETDSAL 1584

Query: 606  LCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNR 665
              +E++ +KE  L  HSE+LAIAF ++N    SPIRI KNLRVC DCH   KL+S I  R
Sbjct: 1585 HDVEEE-DKECHLAVHSEKLAIAFAILNTAPGSPIRITKNLRVCGDCHIAAKLISKIVGR 1643

Query: 666  EIIVRDNSRFHHFKNGSCSCKDFW 689
            EI +RD +RFHHF NG CSC D+W
Sbjct: 1644 EITIRDTNRFHHFYNGVCSCGDYW 1667



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 82/355 (23%), Positives = 156/355 (43%), Gaps = 31/355 (8%)

Query: 18   HLPSR--LHWNIL--------KFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPH 67
             +P R  + WN L        +F    +  +++  L +K +    +G  + LL    +  
Sbjct: 1186 ZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPD----AGTMASLLPAVTNTC 1241

Query: 68   INNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPC 127
            ++N+ + + +F + L + SLV +N++I  Y+ N    EA+ +F  + D  + PD  ++  
Sbjct: 1242 LDNVSFVKEMFMK-LANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIAS 1300

Query: 128  VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD 187
            V+     L A+  G++IH  V +     +  + ++L+ MYAK G ++  R VFD M  +D
Sbjct: 1301 VLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRD 1360

Query: 188  LVSWNCLIDGYVKKGEVEVAMKLFDEMPD----RDLFSWTCLVDGFSKCGKVEIAREIFY 243
            +VSW  +I  Y   G+   A+ LF  M D     D  ++  ++   S  G ++  R  F 
Sbjct: 1361 VVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFK 1420

Query: 244  RMPNR-----NLVSWNAMINGYMKAGDVDSACELFDDMEIR-DLITWNSMIAGYELNGRF 297
             M         +  +  M++   +AG VD A      M +  +   W ++++   +    
Sbjct: 1421 LMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSACRVYSNM 1480

Query: 298  MEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV 352
            +  + LL    +  + P  +     LS +   A    GRW     V++     G+
Sbjct: 1481 I--IGLLAADQLFQLCPEQSGYYVLLSNIYAKA----GRWEDVTTVRSIMKTKGI 1529



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 89/179 (49%)

Query: 256  MINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPN 315
            ++  Y   G+  S   +FD++  ++++ +N MI  Y  N  + +AL + + M    + P+
Sbjct: 1066 LMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPD 1125

Query: 316  DATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFR 375
              T    L A +G   L  G  +H+ +V+ G  ++  +G  LI MY KCG +  A  V  
Sbjct: 1126 HYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLD 1185

Query: 376  AISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVN 434
             +  + V  W +++ G   +G    AL++  +M  +G+KP A T   +L A ++  L N
Sbjct: 1186 ZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDN 1244


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 235/660 (35%), Positives = 378/660 (57%), Gaps = 12/660 (1%)

Query: 38   QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
            QQLHA + K     ++ I   LL+LY      ++  A   F    +  ++VL+N+++  Y
Sbjct: 409  QQLHAYTTKLGFASNNKIEGALLNLYAK--CADIETALDYFLET-EVENVVLWNVMLVAY 465

Query: 98   VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
                    +  +F  +    ++P+ +T P ++K   RLG ++ G+QIH  + K  F  + 
Sbjct: 466  GLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNA 525

Query: 158  FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
            +V S L+ MYAK G++D    +      KD+VSW  +I GY +    + A+  F +M DR
Sbjct: 526  YVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDR 585

Query: 218  DLFS-WTCLVDGFSKCGKVEIARE-------IFYRMPNRNLVSWNAMINGYMKAGDVDSA 269
             + S    L +  S C  ++  +E             + +L   NA++  Y + G ++ +
Sbjct: 586  GIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEES 645

Query: 270  CELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGL 329
               F+  E  D I WN++++G++ +G   EAL +   M    +  N+ T  SA+ A +  
Sbjct: 646  YLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASET 705

Query: 330  AVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMI 389
            A + +G+ +H+ I K G+  +  +   LI MY+KCGSI  A   F  +S K    W A+I
Sbjct: 706  ANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAII 765

Query: 390  VGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGI 449
                 HG  ++ALD F++M    ++P  +T +GVL+ACSH GLV+ G  YF  M ++YG+
Sbjct: 766  NAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGL 825

Query: 450  EPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAAN 509
             P  EHY C+VD+L R G L  AK  I+ MP++P+ ++W +LLS    H N +IGE+AA+
Sbjct: 826  SPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAH 885

Query: 510  NLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFV 569
            +L+++ P+    YV+LSN+YA + +WD     R+ MK++G +K+PG S IE +  +H F 
Sbjct: 886  HLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFY 945

Query: 570  VGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAF 629
            VGD++HP  DEIH    ++  +    G+V D   +L  ++  ++K+  +  HSE+LAI+F
Sbjct: 946  VGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQ-HEQKDPIIFIHSEKLAISF 1004

Query: 630  GLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            GL+++ +  PI ++KNLRVCNDCH+  K +S + NREIIVRD  RFHHF+ G+CSCKD+W
Sbjct: 1005 GLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1064



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 123/488 (25%), Positives = 230/488 (47%), Gaps = 22/488 (4%)

Query: 28  LKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSL 87
           LK + +  E ++LH+  +K  L  +  +S +L   Y+     +L+ A  +FD + +  ++
Sbjct: 95  LKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYL--FKGDLYGAFKVFDEMPER-TI 151

Query: 88  VLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEG--KQIH 145
             +N +IK         E   LF  ++   + P+  T   V++ A R G++     +QIH
Sbjct: 152 FTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLE-ACRGGSVAFDVVEQIH 210

Query: 146 GLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVE 205
             +   G      V + L+ +Y++ G +DL RRVFD +  KD  SW  +I G + K E E
Sbjct: 211 ARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISG-LSKNECE 269

Query: 206 V-AMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS----WNAM 256
             A++LF +M    +    ++++ ++    K   +EI  ++   +      S     NA+
Sbjct: 270 AEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNAL 329

Query: 257 INGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPND 316
           ++ Y   G++ SA  +F +M  RD +T+N++I G    G   +A+EL + M +  + P+ 
Sbjct: 330 VSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDS 389

Query: 317 ATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRA 376
            TL S + A +    L +G+ +H+Y  K GF  +  +   L+ +Y+KC  IE+AL  F  
Sbjct: 390 NTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLE 449

Query: 377 ISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDG 436
              + V  W  M+V  G+      +  +F +M    + P   T+  +L  C   G +  G
Sbjct: 450 TEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELG 509

Query: 437 RRYFNMMINDYGIEPTIEHYGC--LVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG 494
            +  + +I        +  Y C  L+D+  + G L+ A   +     + + V W ++++G
Sbjct: 510 EQIHSQIIK---TNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGK-DVVSWTTMIAG 565

Query: 495 ARNHGNKD 502
              +   D
Sbjct: 566 YTQYNFDD 573


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 247/661 (37%), Positives = 382/661 (57%), Gaps = 13/661 (1%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           KE +++H   +K     ++ + + L++ Y       +  A ++FD  L  P +V +N +I
Sbjct: 212 KECKRVHGYVLKLGFGSNTAVVNSLIAAYFK--FGGVESAHNLFDE-LSEPDVVSWNSMI 268

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
              V N  S   L +F  +L   +  D  TL  V+   A +G +  G+ +HG   K  F 
Sbjct: 269 NGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFS 328

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
            +    ++L+ MY+K G ++    VF  M D  +VSW  +I  YV++G    A+ LFDEM
Sbjct: 329 EEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEM 388

Query: 215 PDR----DLFSWTCLVDGFSKCGKVEIAREIF-YRMPN---RNLVSWNAMINGYMKAGDV 266
             +    D+++ T +V   +    ++  R++  Y + N    NL   NA+IN Y K G V
Sbjct: 389 QSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSV 448

Query: 267 DSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326
           + A  +F  + ++D+++WN+MI GY  N    EALEL   M      P+D T+   L A 
Sbjct: 449 EEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQ-KQFKPDDITMACVLPAC 507

Query: 327 AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWT 386
           AGLA L+KGR +H +I++ G+  D  +   L+ MY+KCG +  A  +F  I KK +  WT
Sbjct: 508 AGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWT 567

Query: 387 AMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIND 446
            MI G GMHG   +A+  FN+M   G++P   +F  +LNACSH+GL+N+G ++FN M N+
Sbjct: 568 VMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNACSHSGLLNEGWKFFNSMRNE 627

Query: 447 YGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEY 506
            G+EP +EHY C+VD+L R G L +A   IESMP++P+  IW  LLSG R H +  + E 
Sbjct: 628 CGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEK 687

Query: 507 AANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLH 566
            A ++ ++ PD    YVVL+N+YA A +W++V ++R+ M+KRGF+++PG S IE  G  +
Sbjct: 688 VAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFN 747

Query: 567 EFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLA 626
            FV G+  HPQ  +I   LS++  +++   +      VL+  ED  EKE     HSE+ A
Sbjct: 748 IFVAGNSKHPQAKKIDVLLSKLTMQMQNEDYSSMFRYVLI-NEDDMEKEMIQCGHSEKSA 806

Query: 627 IAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCK 686
           +AFG++N+     +R+ KN RVC DCH + K +S     EI++RD++RFHHFK+G CSC+
Sbjct: 807 MAFGILNLPPGRTVRVSKNRRVCGDCHEMGKFMSKTTKMEIVLRDSNRFHHFKDGLCSCR 866

Query: 687 D 687
           D
Sbjct: 867 D 867



 Score =  219 bits (558), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 144/494 (29%), Positives = 258/494 (52%), Gaps = 18/494 (3%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           ++ +++H++ +   +     + ++L+ +YV+    +L   R IFD+I+ +  + L+NLL+
Sbjct: 111 EDGKRVHSVIISNGISVDEALGAKLVFMYVN--CGDLVQGRKIFDKIM-NDKVFLWNLLM 167

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
             Y       E+++LF  +    ++ + +T  CV+K  A LG +KE K++HG V KLGFG
Sbjct: 168 SEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFG 227

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
            +  V++SL++ Y KFG ++    +FD + + D+VSWN +I+G V  G     +++F +M
Sbjct: 228 SNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQM 287

Query: 215 ----PDRDLFSWTCLVDGFSKCGKVEIAREI----FYRMPNRNLVSWNAMINGYMKAGDV 266
                + DL +   ++   +  G + + R +         +  +V  N +++ Y K G++
Sbjct: 288 LILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNL 347

Query: 267 DSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326
           + A E+F  M    +++W S+IA Y   G + +A+ L + M    V P+  T+ S + A 
Sbjct: 348 NGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHAC 407

Query: 327 AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWT 386
           A  + L+KGR +HSY++KNG   +  +   LI MY+KCGS+E A  VF  I  K +  W 
Sbjct: 408 ACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWN 467

Query: 387 AMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIND 446
            MI G   + +  +AL+LF  M +   KP  IT   VL AC+    ++ GR     ++  
Sbjct: 468 TMIGGYSQNLLPNEALELFLDMQKQ-FKPDDITMACVLPACAGLAALDKGREIHGHILRR 526

Query: 447 YGIEPTIEHYGC-LVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNH--GNKDI 503
                   H  C LVD+  + G L  A+   + +P + + + W  +++G   H  GN+ I
Sbjct: 527 GYFSDL--HVACALVDMYAKCGLLVLAQLLFDMIP-KKDLISWTVMIAGYGMHGFGNEAI 583

Query: 504 GEYAANNLIKVAPD 517
             +    +  + PD
Sbjct: 584 STFNEMRIAGIEPD 597



 Score =  188 bits (478), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 124/435 (28%), Positives = 223/435 (51%), Gaps = 12/435 (2%)

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD 187
           V++  A   ++++GK++H ++   G   D+ + + LV MY   G++  GR++FD + +  
Sbjct: 100 VLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDK 159

Query: 188 LVSWNCLIDGYVKKGEVEVAMKLFDEMPD----RDLFSWTCLVDGFSKCGKVEIAREIF- 242
           +  WN L+  Y K G    ++ LF +M       + +++TC++  F+  GKV+  + +  
Sbjct: 160 VFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHG 219

Query: 243 YRMP---NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFME 299
           Y +      N    N++I  Y K G V+SA  LFD++   D+++WNSMI G  +NG    
Sbjct: 220 YVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGN 279

Query: 300 ALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQ 359
            LE+   MLI  V  +  TLVS L A A +  L+ GR +H + VK  F  + V    L+ 
Sbjct: 280 GLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLD 339

Query: 360 MYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAIT 419
           MYSKCG++  A  VF  +    +  WT++I      G+ + A+ LF++M   G++P   T
Sbjct: 340 MYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYT 399

Query: 420 FIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM 479
              +++AC+ +  ++ GR   + +I + G+   +     L+++  + G +EEA+     +
Sbjct: 400 VTSIVHACACSSSLDKGRDVHSYVIKN-GMGSNLPVTNALINMYAKCGSVEEARLVFSKI 458

Query: 480 PMRPNFVIWMSLLSG-ARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKV 538
           P++ + V W +++ G ++N    +  E   +   +  PD I    VL    A     DK 
Sbjct: 459 PVK-DIVSWNTMIGGYSQNLLPNEALELFLDMQKQFKPDDITMACVLPAC-AGLAALDKG 516

Query: 539 SEVREMMKKRGFRKD 553
            E+   + +RG+  D
Sbjct: 517 REIHGHILRRGYFSD 531



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 92/215 (42%), Gaps = 4/215 (1%)

Query: 285 NSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVK 344
           N+ I  +   G    A+ELL      ++  N  +  S L   A    L  G+ +HS I+ 
Sbjct: 65  NAKINKFCEMGDLRNAIELLTKSKSYELGLN--SYCSVLQLCAEKKSLEDGKRVHSVIIS 122

Query: 345 NGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDL 404
           NG  VD  LG  L+ MY  CG +     +F  I   KV  W  ++      G   +++ L
Sbjct: 123 NGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSL 182

Query: 405 FNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILC 464
           F KM ++G+     TF  VL   +  G V + +R    ++   G          L+    
Sbjct: 183 FKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLK-LGFGSNTAVVNSLIAAYF 241

Query: 465 RTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
           + G +E A +  + +   P+ V W S+++G   +G
Sbjct: 242 KFGGVESAHNLFDELS-EPDVVSWNSMINGCVVNG 275


>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Glycine max]
          Length = 628

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 249/658 (37%), Positives = 372/658 (56%), Gaps = 64/658 (9%)

Query: 32  STHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYN 91
           STH    Q+HA  ++  L +H  ++ +L   Y    + +LH++ ++F R   +P++ L+ 
Sbjct: 35  STH-HLLQIHAALLRRGLHHHPILNFKLQRSYAS--LGHLHHSVTLFHRT-PNPNVFLWT 90

Query: 92  LLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKL 151
            +I  +      H AL+ +  +L   + P+ FTL  ++K       +   + +H    K 
Sbjct: 91  HIINAHAHFDLFHHALSYYSQMLTHPIQPNAFTLSSLLKACT----LHPARAVHSHAIKF 146

Query: 152 GFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLF 211
           G     +V + LV                               D Y + G+V  A KLF
Sbjct: 147 GLSSHLYVSTGLV-------------------------------DAYARGGDVASAQKLF 175

Query: 212 DEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACE 271
           D MP+R L S+T ++  ++K G +  AR +F  M  +++V WN MI+GY + G  + A  
Sbjct: 176 DAMPERSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALV 235

Query: 272 LFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAV 331
            F                         + + ++     G V PN+ T+V+ LS+   +  
Sbjct: 236 FFR------------------------KMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGA 271

Query: 332 LNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVG 391
           L  G+W+HSY+  NG  V+  +GT L+ MY KCGS+E A  VF  +  K V  W +MI+G
Sbjct: 272 LECGKWVHSYVENNGIKVNVRVGTALVDMYCKCGSLEDARKVFDVMEGKDVVAWNSMIMG 331

Query: 392 LGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP 451
            G+HG + +AL LF++MC +G+KP+ ITF+ VL AC+HAGLV+ G   F+ M + YG+EP
Sbjct: 332 YGIHGFSDEALQLFHEMCCIGVKPSDITFVAVLTACAHAGLVSKGWEVFDSMKDGYGMEP 391

Query: 452 TIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNL 511
            +EHYGC+V++L R G ++EA   + SM + P+ V+W +LL   R H N  +GE  A  L
Sbjct: 392 KVEHYGCMVNLLGRAGRMQEAYDLVRSMEVEPDPVLWGTLLWACRIHSNVSLGEEIAEIL 451

Query: 512 IKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVG 571
           +     + G YV+LSN+YAAA  W  V++VR MMK  G  K+PG SSIE +  +HEFV G
Sbjct: 452 VSNGLASSGTYVLLSNMYAAARNWVGVAKVRSMMKGSGVEKEPGCSSIEVKNRVHEFVAG 511

Query: 572 DKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGL 631
           D+ HP++ +I+S L +M   LK   + P T  VL  I +Q EKE  LE HSE+LA+AFGL
Sbjct: 512 DRRHPRSKDIYSMLEKMNGWLKERHYTPKTDAVLHDIGEQ-EKEQSLEVHSEKLALAFGL 570

Query: 632 INVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           I+    + I+IVKNLRVC DCH+V K++S I  R+II+RD +RFHHF+NGSCSC+D+W
Sbjct: 571 ISTSPGAAIKIVKNLRVCLDCHAVMKIMSKISGRKIIMRDRNRFHHFENGSCSCRDYW 628


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 254/729 (34%), Positives = 406/729 (55%), Gaps = 94/729 (12%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNL----HYARSIFDRILQHPSLVLYNLL 93
           +QLHA  +  +L +H+   + L++     H   L    HY   +F+  L +P++ ++  +
Sbjct: 18  RQLHAQIIHNSLHHHNYWVALLIN-----HCTRLRAPPHYTHLLFNSTL-NPNVFVFTSM 71

Query: 94  IKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGF 153
           ++ Y   Q   + + ++  +    + PD F  P +IK A        G   H  V KLG 
Sbjct: 72  LRFYSHLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKSAG-----TGGIGFHAHVLKLGH 126

Query: 154 GFDKFVLSSLVSMYAKFGEIDLGRRVFD-------------------------------- 181
           G D FV ++++ MYA+ G I   R+VFD                                
Sbjct: 127 GSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLF 186

Query: 182 -AMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIARE 240
             M ++++++W  ++ GY K  ++E A + FD MP+R + SW  ++ G+++ G  E A  
Sbjct: 187 DVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALR 246

Query: 241 IFYRMPNRNL----VSW-----------------------------------NAMINGYM 261
           +F  M N  +     +W                                    A+++ Y 
Sbjct: 247 LFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFVRTALLDMYA 306

Query: 262 KAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL-PNDATLV 320
           K GD+DSA +LF+ M  R+++TWNSMIAGY  NG+   A+EL + M+    L P++ T+V
Sbjct: 307 KFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMV 366

Query: 321 SALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKK 380
           S +SA   L  L  G W+  ++ +N   +       +I MYS+CGS+E A  VF+ ++ +
Sbjct: 367 SVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATR 426

Query: 381 KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYF 440
            V  +  +I G   HG   +A++L + M   G++P  +TFIGVL ACSHAGL+ +GR+ F
Sbjct: 427 DVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVF 486

Query: 441 NMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGN 500
             +      +P I+HY C+VD+L R G LE+AK T+E MPM P+  ++ SLL+ +R H  
Sbjct: 487 ESIK-----DPAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQ 541

Query: 501 KDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIE 560
            ++GE AAN L ++ PD  G +++LSNIYA+AG+W  V  +RE MKK G +K  G S +E
Sbjct: 542 VELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVE 601

Query: 561 HRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELEN 620
           + G LH+F+V D+SH ++D+I+  L E+R K++ AG++ D + VL  +E+++++E  +  
Sbjct: 602 YGGKLHKFIVADRSHERSDDIYQLLIELRKKMREAGYIADKSCVLRDVEEEEKEEI-VGT 660

Query: 621 HSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKN 680
           HSE+LAI + L+  ++ + IR+VKNLRVC DCH+  K++S +  R IIVRDN+RFH F +
Sbjct: 661 HSEKLAICYALLVSEAGAVIRVVKNLRVCWDCHTAIKMISKLEGRVIIVRDNNRFHCFND 720

Query: 681 GSCSCKDFW 689
           G CSCKD+W
Sbjct: 721 GLCSCKDYW 729


>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 236/561 (42%), Positives = 339/561 (60%), Gaps = 10/561 (1%)

Query: 137 AIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLID 196
           AIK GKQ+H  V   GFGFD  + + LV++Y     +   R +FD +   ++  WN LI 
Sbjct: 90  AIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDRIPKHNIFLWNVLIR 149

Query: 197 GYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPN----R 248
           GY   G  E A++L+ +M D  L    F++  ++   +    +E  REI   +      +
Sbjct: 150 GYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEK 209

Query: 249 NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETML 308
           ++    A+I+ Y K G V SA E+FD + +RD + WNSM+A Y  NG     L L   M+
Sbjct: 210 DVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGHPDACLSLCSEMV 269

Query: 309 IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIE 368
           +  + P +ATLV+A+SA A  A L +GR +H    +  F     + T L+ MY+KCGS+ 
Sbjct: 270 LTGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEFESHDKVKTALVDMYAKCGSVR 329

Query: 369 SALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACS 428
            A  +F  +  K+V  W AMI G  MHG AT+ALDLF +M R+  KP  ITF+GVL+ACS
Sbjct: 330 VARNLFERLGVKRVVSWNAMITGYAMHGHATEALDLFEEMNRVA-KPDHITFVGVLSACS 388

Query: 429 HAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIW 488
           H GL+ +G  +F  MI DY I+PT++HY C+VD+L  +G L+EA + I  M + P+  +W
Sbjct: 389 HGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSGVW 448

Query: 489 MSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548
            +LL+  + H N ++GE A   LI++ PD  G YV+LSNIYA AG+W+ V+++R++M  R
Sbjct: 449 GALLNSCKIHANVELGEIALERLIELEPDDAGNYVILSNIYAQAGKWEGVAKLRKLMTDR 508

Query: 549 GFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCI 608
             +K    S IE +  +H F+ GD SHP +DEI+S+L  +   +K AG+ P T  V   +
Sbjct: 509 RLKKSIACSWIEVKNKVHAFLSGDTSHPLSDEIYSELERVGGLMKEAGYSPSTGSVFHDV 568

Query: 609 EDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREII 668
           ED  EK   + +HSERLAIAFGLI+    + + I KNLR+C DCH   K +S I  REI 
Sbjct: 569 EDD-EKANMVCSHSERLAIAFGLISTPPGTRLLITKNLRICEDCHVAIKFISKITEREIT 627

Query: 669 VRDNSRFHHFKNGSCSCKDFW 689
           VRD +R+HHFK+G CSC D+W
Sbjct: 628 VRDVNRYHHFKDGVCSCGDYW 648



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 104/316 (32%), Positives = 159/316 (50%), Gaps = 45/316 (14%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           K  +QLHA        + + I+++L++LY     ++L  AR +FDRI +H ++ L+N+LI
Sbjct: 92  KPGKQLHAQVCLAGFGFDTVIATKLVNLYCV--CDSLSSARLLFDRIPKH-NIFLWNVLI 148

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
           + Y +N     A+ L+  + D  L+PDNFT P V+K  A L AI+ G++IH  V + G+ 
Sbjct: 149 RGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWE 208

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
            D FV ++L+ MYAK G +   R VFD +  +D V WN ++  Y + G  +  + L  EM
Sbjct: 209 KDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGHPDACLSLCSEM 268

Query: 215 --------------------------PDRDL--FSW-----------TCLVDGFSKCGKV 235
                                       R+L   SW           T LVD ++KCG V
Sbjct: 269 VLTGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEFESHDKVKTALVDMYAKCGSV 328

Query: 236 EIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDME---IRDLITWNSMIAGYE 292
            +AR +F R+  + +VSWNAMI GY   G    A +LF++M      D IT+  +++   
Sbjct: 329 RVARNLFERLGVKRVVSWNAMITGYAMHGHATEALDLFEEMNRVAKPDHITFVGVLSACS 388

Query: 293 LNGRFMEALELLETML 308
             G   E     ETM+
Sbjct: 389 HGGLLEEGWMFFETMI 404



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 129/273 (47%), Gaps = 16/273 (5%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           AR +FD+IL   + VL+N ++  Y  N      L+L  +++   L P   TL   I  +A
Sbjct: 230 AREVFDKILVRDA-VLWNSMLAAYSQNGHPDACLSLCSEMVLTGLRPTEATLVTAISASA 288

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
              A+ +G+++HGL ++  F     V ++LV MYAK G + + R +F+ +  K +VSWN 
Sbjct: 289 DNAALPQGRELHGLSWRQEFESHDKVKTALVDMYAKCGSVRVARNLFERLGVKRVVSWNA 348

Query: 194 LIDGYVKKGEVEVAMKLFDEM---PDRDLFSWTCLVDGFSKCGKVEIAREIFYRM----- 245
           +I GY   G    A+ LF+EM      D  ++  ++   S  G +E     F  M     
Sbjct: 349 MITGYAMHGHATEALDLFEEMNRVAKPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYK 408

Query: 246 PNRNLVSWNAMINGYMKAGDVDSACELFDDMEI-RDLITWNSMIAGYELNGRFMEALELL 304
            +  +  +  M++    +G +D A  L   M++  D   W +++   +++         L
Sbjct: 409 IDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSGVWGALLNSCKIHANVELGEIAL 468

Query: 305 ETMLIGDVLPNDATLVSALSAVAGLAVLNKGRW 337
           E ++  ++ P+DA     LS +   A    G+W
Sbjct: 469 ERLI--ELEPDDAGNYVILSNIYAQA----GKW 495



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 87/189 (46%), Gaps = 2/189 (1%)

Query: 314 PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTV 373
           P  +   S L +      +  G+ +H+ +   GF  D V+ T L+ +Y  C S+ SA  +
Sbjct: 73  PTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLL 132

Query: 374 FRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLV 433
           F  I K  +  W  +I G   +G    A+ L+ +M   G+ P   TF  VL AC+    +
Sbjct: 133 FDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAI 192

Query: 434 NDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLS 493
             GR     ++   G E  +     L+D+  + G +  A+   + + +R + V+W S+L+
Sbjct: 193 EHGREIHEHVVQT-GWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVR-DAVLWNSMLA 250

Query: 494 GARNHGNKD 502
               +G+ D
Sbjct: 251 AYSQNGHPD 259


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 242/624 (38%), Positives = 360/624 (57%), Gaps = 10/624 (1%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           AR +FD +L+  + VL+N ++   V N    EA+ +F D++   +  D+ T+  V+ G A
Sbjct: 160 ARKVFDGMLERDT-VLWNTMVSGLVKNSCFDEAILIFGDMVKGGIGFDSTTVAAVLPGVA 218

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
            L  +  G  I  L  K+GF    +V++ L  +Y+K GEI+  R +F  +   DLVS+N 
Sbjct: 219 ELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYNA 278

Query: 194 LIDGYVKKGEVEVAMKLFDEM----PDRDLFSWTCLVDGFSKCGKVEIAREIF----YRM 245
           +I GY    E E +++LF E+       +  S   L+  F   G + + R I        
Sbjct: 279 MISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSG 338

Query: 246 PNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLE 305
              N     A+   Y +  +++SA  LFD+   + L +WN+MI+GY  NG   +A+ L +
Sbjct: 339 VVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQ 398

Query: 306 TMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCG 365
            M   +V PN  T+ S LSA A L  L+ G+W+H  I +  F  +  + T LI MY+KCG
Sbjct: 399 EMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINRESFESNIFVSTALIDMYAKCG 458

Query: 366 SIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN 425
           SI  A  +F  + +K    W AMI G G+HG   +AL+LFN+M    + PT +TF+ VL 
Sbjct: 459 SITEAQRLFSMMPEKNAVTWNAMISGYGLHGYGHEALNLFNEMLHSRVSPTGVTFLSVLY 518

Query: 426 ACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNF 485
           ACSHAGLV +G   F  M++D+G EP  EHY C+VD+L R G L++A   I  MP+ P  
Sbjct: 519 ACSHAGLVREGDEIFRSMVHDHGFEPLPEHYACMVDLLGRAGNLDKALDFIRKMPVEPGP 578

Query: 486 VIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMM 545
            +W +LL     H + ++   A++ L ++ P  +G YV+LSNIY+A   + + + VR ++
Sbjct: 579 PVWGALLGACMIHKDANLARLASDKLFELDPQNVGYYVLLSNIYSAGQNYPEAASVRGVV 638

Query: 546 KKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVL 605
           K+R   K PG + IE    LH F  GD+SHPQ   I++ L ++  K++ AG   +T   L
Sbjct: 639 KRRKLAKTPGCTLIEVANTLHIFTSGDQSHPQATAIYAMLEKLTGKMREAGFQTETGTAL 698

Query: 606 LCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNR 665
             +E++ EKE  ++ HSE+LAIAFGLI  +  + IRI+KNLRVC DCH+ TK +S I  R
Sbjct: 699 HDVEEE-EKELMVKVHSEKLAIAFGLITSEPGTEIRIIKNLRVCLDCHNATKFISKITER 757

Query: 666 EIIVRDNSRFHHFKNGSCSCKDFW 689
            I+VRD +RFHHFK+G CSC D+W
Sbjct: 758 VIVVRDANRFHHFKDGICSCGDYW 781



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 147/533 (27%), Positives = 244/533 (45%), Gaps = 85/533 (15%)

Query: 67  HINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLL-PDNFTL 125
           H+  +  A  +F  I  +P L LYN+LI+ +  N     A++L+  L     L PDNFT 
Sbjct: 54  HLKAIDQASLLFSTI-PNPDLFLYNVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDNFTY 112

Query: 126 PCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD 185
             VI GA+ LG          +    GFG D FV S++V+ Y KF  +   R+VFD M +
Sbjct: 113 AFVISGASSLGLGLLLHAHSIVA---GFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLE 169

Query: 186 KDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD--------------------RDL------ 219
           +D V WN ++ G VK    + A+ +F +M                      +DL      
Sbjct: 170 RDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGI 229

Query: 220 -------------FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDV 266
                        +  T L   +SKCG++E AR +F ++   +LVS+NAMI+GY    + 
Sbjct: 230 QCLAMKVGFHSHAYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNET 289

Query: 267 DSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326
           +S+  LF ++          +++G ++                     N +++V  +   
Sbjct: 290 ESSVRLFKEL----------LVSGEKV---------------------NSSSIVGLIPVF 318

Query: 327 AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWT 386
                L+  R +H +  K+G V +  + T L  +YS+   IESA  +F   S+K +  W 
Sbjct: 319 FPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLASWN 378

Query: 387 AMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIND 446
           AMI G   +G+  +A+ LF +M +  ++P  +T   +L+AC+  G ++ G ++ + +IN 
Sbjct: 379 AMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLG-KWVHDLINR 437

Query: 447 YGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEY 506
              E  I     L+D+  + G + EA+     MP + N V W +++SG   HG       
Sbjct: 438 ESFESNIFVSTALIDMYAKCGSITEAQRLFSMMPEK-NAVTWNAMISGYGLHGYGHEALN 496

Query: 507 AANNLI--KVAPDTIGCYVVLSNIYAA--AGQWDKVSEV-REMMKKRGFRKDP 554
             N ++  +V+P  +     LS +YA   AG   +  E+ R M+   GF   P
Sbjct: 497 LFNEMLHSRVSPTGV---TFLSVLYACSHAGLVREGDEIFRSMVHDHGFEPLP 546


>gi|356568485|ref|XP_003552441.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g23330-like [Glycine max]
          Length = 1011

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 244/705 (34%), Positives = 391/705 (55%), Gaps = 59/705 (8%)

Query: 40   LHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVF 99
            LHAL VK   +     ++ LL+LY     NN+ +A+ +FD I Q  +   + +LI  +  
Sbjct: 311  LHALYVKNGSLQTLNPANHLLTLYAKS--NNMAHAQKLFDEIPQRNTQT-WTILISGFAR 367

Query: 100  NQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFV 159
               S     LF ++  +   P+ +TL  V+K  +    ++ GK +H  + + G   D  +
Sbjct: 368  AGSSEMVFNLFREMQAKGACPNQYTLSSVLKCCSLDNNLQLGKGVHAWMLRNGIDVDVVL 427

Query: 160  LSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL 219
             +S++ +Y K    +   R+F+ M++ D+VSWN +I  Y++ G+VE ++ +F  +P +D+
Sbjct: 428  GNSILDLYLKCKVFEYAERLFELMNEGDVVSWNIMIGAYLRAGDVEKSLDMFRRLPYKDV 487

Query: 220  FSWTCLVDGFSKCGKVEIAREIFYRM----PNRNLVSWN--------------------- 254
             SW  +VDG  +CG    A E  Y M       + V+++                     
Sbjct: 488  VSWNTIVDGLLQCGYERHALEQLYCMVECGTEFSAVTFSIALILASSLSHVELGRQLHGM 547

Query: 255  --------------AMINGYMKAGDVDSACELFDDMEI----------------RDLITW 284
                          +++  Y K G +D A  +  D+ +                  +++W
Sbjct: 548  VLKFGFDSDGFIRSSLVEMYCKCGRMDKASIILRDVPLDVLRKGNARVSYKEPKAGIVSW 607

Query: 285  NSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVK 344
             SM++GY  NG++ + L+    M+   V+ +  T+ + +SA A   +L  GR +H+Y+ K
Sbjct: 608  GSMVSGYVWNGKYEDGLKTFRLMVRELVVVDIRTVTTIISACANAGILEFGRHVHAYVQK 667

Query: 345  NGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDL 404
             G  +D  +G+ LI MYSK GS++ A  VFR  ++  +  WT+MI G  +HG    A+ L
Sbjct: 668  IGHRIDAYVGSSLIDMYSKSGSLDDAWMVFRQSNEPNIVMWTSMISGYALHGQGMHAIGL 727

Query: 405  FNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILC 464
            F +M   G+ P  +TF+GVLNACSHAGL+ +G RYF MM + Y I P +EH   +VD+  
Sbjct: 728  FEEMLNQGIIPNEVTFLGVLNACSHAGLIEEGCRYFRMMKDAYCINPGVEHCTSMVDLYG 787

Query: 465  RTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVV 524
            R G+L + K+ I    +     +W S LS  R H N ++G++ +  L++VAP   G YV+
Sbjct: 788  RAGHLTKTKNFIFKNGISHLTSVWKSFLSSCRLHKNVEMGKWVSEMLLQVAPSDPGAYVL 847

Query: 525  LSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSK 584
            LSN+ A+  +WD+ + VR +M +RG +K PG S I+ +  +H FV+GD+SHPQ DEI+S 
Sbjct: 848  LSNMCASNHRWDEAARVRSLMHQRGVKKQPGQSWIQLKDQIHTFVMGDRSHPQDDEIYSY 907

Query: 585  LSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVK 644
            L  +  +LK  G+  D   V+  +E++ + E  + +HSE+LA+ FG+IN  +R+PIRI+K
Sbjct: 908  LDILIGRLKEIGYSFDVKLVMQDVEEE-QGEVLISHHSEKLAVVFGIINTANRTPIRIIK 966

Query: 645  NLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            NLR+C DCH+  K  S + +REIIVRD  RFHHFK+GSCSC D+W
Sbjct: 967  NLRICTDCHNFIKYASQLLDREIIVRDIHRFHHFKHGSCSCGDYW 1011



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 139/314 (44%), Gaps = 26/314 (8%)

Query: 27  ILKFSSTHKET-QQLHALSVKTNLIYHSGISSRLLSLYV-------------DPHINNLH 72
           IL  S +H E  +QLH + +K        I S L+ +Y              D  ++ L 
Sbjct: 530 ILASSLSHVELGRQLHGMVLKFGFDSDGFIRSSLVEMYCKCGRMDKASIILRDVPLDVLR 589

Query: 73  YARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGA 132
              +          +V +  ++  YV+N +  + L  F  ++   ++ D  T+  +I   
Sbjct: 590 KGNARVSYKEPKAGIVSWGSMVSGYVWNGKYEDGLKTFRLMVRELVVVDIRTVTTIISAC 649

Query: 133 ARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWN 192
           A  G ++ G+ +H  V K+G   D +V SSL+ MY+K G +D    VF   ++ ++V W 
Sbjct: 650 ANAGILEFGRHVHAYVQKIGHRIDAYVGSSLIDMYSKSGSLDDAWMVFRQSNEPNIVMWT 709

Query: 193 CLIDGYVKKGEVEVAMKLFDEMPDRDLF----SWTCLVDGFSKCGKVEIAREIFYRMP-- 246
            +I GY   G+   A+ LF+EM ++ +     ++  +++  S  G +E     F  M   
Sbjct: 710 SMISGYALHGQGMHAIGLFEEMLNQGIIPNEVTFLGVLNACSHAGLIEEGCRYFRMMKDA 769

Query: 247 ---NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLIT-WNSMIAGYELNGRFMEALE 302
              N  +    +M++ Y +AG +           I  L + W S ++   L+ + +E  +
Sbjct: 770 YCINPGVEHCTSMVDLYGRAGHLTKTKNFIFKNGISHLTSVWKSFLSSCRLH-KNVEMGK 828

Query: 303 LLETMLIGDVLPND 316
            +  ML+  V P+D
Sbjct: 829 WVSEMLL-QVAPSD 841


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 235/660 (35%), Positives = 378/660 (57%), Gaps = 12/660 (1%)

Query: 38   QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
            QQLHA + K     ++ I   LL+LY      ++  A   F    +  ++VL+N+++  Y
Sbjct: 369  QQLHAYTTKLGFASNNKIEGALLNLYA--KCADIETALDYFLET-EVENVVLWNVMLVAY 425

Query: 98   VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
                    +  +F  +    ++P+ +T P ++K   RLG ++ G+QIH  + K  F  + 
Sbjct: 426  GLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNA 485

Query: 158  FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
            +V S L+ MYAK G++D    +      KD+VSW  +I GY +    + A+  F +M DR
Sbjct: 486  YVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDR 545

Query: 218  DLFS-WTCLVDGFSKCGKVEIARE-------IFYRMPNRNLVSWNAMINGYMKAGDVDSA 269
             + S    L +  S C  ++  +E             + +L   NA++  Y + G ++ +
Sbjct: 546  GIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEES 605

Query: 270  CELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGL 329
               F+  E  D I WN++++G++ +G   EAL +   M    +  N+ T  SA+ A +  
Sbjct: 606  YLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASET 665

Query: 330  AVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMI 389
            A + +G+ +H+ I K G+  +  +   LI MY+KCGSI  A   F  +S K    W A+I
Sbjct: 666  ANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAII 725

Query: 390  VGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGI 449
                 HG  ++ALD F++M    ++P  +T +GVL+ACSH GLV+ G  YF  M ++YG+
Sbjct: 726  NAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGL 785

Query: 450  EPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAAN 509
             P  EHY C+VD+L R G L  AK  I+ MP++P+ ++W +LLS    H N +IGE+AA+
Sbjct: 786  SPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAH 845

Query: 510  NLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFV 569
            +L+++ P+    YV+LSN+YA + +WD     R+ MK++G +K+PG S IE +  +H F 
Sbjct: 846  HLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFY 905

Query: 570  VGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAF 629
            VGD++HP  DEIH    ++  +    G+V D   +L  ++  ++K+  +  HSE+LAI+F
Sbjct: 906  VGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQ-HEQKDPIIFIHSEKLAISF 964

Query: 630  GLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            GL+++ +  PI ++KNLRVCNDCH+  K +S + NREIIVRD  RFHHF+ G+CSCKD+W
Sbjct: 965  GLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1024



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 123/488 (25%), Positives = 230/488 (47%), Gaps = 22/488 (4%)

Query: 28  LKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSL 87
           LK + +  E ++LH+  +K  L  +  +S +L   Y+     +L+ A  +FD + +  ++
Sbjct: 55  LKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYL--FKGDLYGAFKVFDEMPER-TI 111

Query: 88  VLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEG--KQIH 145
             +N +IK         E   LF  ++   + P+  T   V++ A R G++     +QIH
Sbjct: 112 FTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLE-ACRGGSVAFDVVEQIH 170

Query: 146 GLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVE 205
             +   G      V + L+ +Y++ G +DL RRVFD +  KD  SW  +I G + K E E
Sbjct: 171 ARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISG-LSKNECE 229

Query: 206 V-AMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS----WNAM 256
             A++LF +M    +    ++++ ++    K   +EI  ++   +      S     NA+
Sbjct: 230 AEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNAL 289

Query: 257 INGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPND 316
           ++ Y   G++ SA  +F +M  RD +T+N++I G    G   +A+EL + M +  + P+ 
Sbjct: 290 VSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDS 349

Query: 317 ATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRA 376
            TL S + A +    L +G+ +H+Y  K GF  +  +   L+ +Y+KC  IE+AL  F  
Sbjct: 350 NTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLE 409

Query: 377 ISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDG 436
              + V  W  M+V  G+      +  +F +M    + P   T+  +L  C   G +  G
Sbjct: 410 TEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELG 469

Query: 437 RRYFNMMINDYGIEPTIEHYGC--LVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG 494
            +  + +I        +  Y C  L+D+  + G L+ A   +     + + V W ++++G
Sbjct: 470 EQIHSQIIK---TNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGK-DVVSWTTMIAG 525

Query: 495 ARNHGNKD 502
              +   D
Sbjct: 526 YTQYNFDD 533


>gi|357507741|ref|XP_003624159.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87162577|gb|ABD28372.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499174|gb|AES80377.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 755

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 239/687 (34%), Positives = 383/687 (55%), Gaps = 60/687 (8%)

Query: 59  LLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHE-ALTLFCDLLDRF 117
           LL+LYV    +NL +A  +FD I  H +   + +LI  +     S E   +LF ++    
Sbjct: 73  LLTLYVKS--SNLDHAHKLFDEI-THKNTQTWTILISGFARAAGSSELVFSLFREMQADG 129

Query: 118 LLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGR 177
             P+ +TL  V+K  +R   I+ GK IH  + + G G D  + +S++ +Y K  E +   
Sbjct: 130 ACPNQYTLSSVLKCCSRENNIQFGKGIHAWILRNGVGGDVVLENSILDLYLKCKEFEYAE 189

Query: 178 RVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGK--- 234
             F+ M +KD+VSWN +I  Y+++G+VE ++++F   P++D+ SW  ++DG  +CG    
Sbjct: 190 SFFELMIEKDVVSWNIMIGAYLREGDVEKSLEMFRNFPNKDVVSWNTIIDGLIQCGYERL 249

Query: 235 --------------------------------VEIAREIFYRMPNRNLVS----WNAMIN 258
                                           VE+ R++  R+    L S     ++++ 
Sbjct: 250 ALEQLYCMVAHGTEFSPVTFSIALILVSSLSLVEVGRQLHGRVLTFGLNSDGYIRSSLVE 309

Query: 259 GYMKAGDVDSACELFDDMEIRDL----------------ITWNSMIAGYELNGRFMEALE 302
            Y K G +D A  +  D+ +  L                ++W+SM++GY  NG++ + ++
Sbjct: 310 MYGKCGRMDKASTILKDVPLNFLRKGNFGVTCKEPKARMVSWSSMVSGYVWNGKYEDGMK 369

Query: 303 LLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYS 362
              +M+   ++ +  T+ + +SA A   +L  G+ +H+YI K G  +D  +G+ LI MYS
Sbjct: 370 TFRSMVCELIVVDIRTVATIISACANAGILEFGKQIHAYIQKIGLRIDAYVGSSLIDMYS 429

Query: 363 KCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIG 422
           K GS++ AL +F  I +  V  WT+MI G  +HG   +A+ LF  M  +G+ P  +TF+G
Sbjct: 430 KSGSLDDALMIFEQIKEPNVVLWTSMISGCALHGQGKEAISLFEGMLNLGIIPNEVTFVG 489

Query: 423 VLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMR 482
           VLNACSH GL+ +G RYF MM + Y I P +EHY  +V++  R G+L EAK+ I    + 
Sbjct: 490 VLNACSHVGLIEEGCRYFRMMKDTYHINPEVEHYTSMVNLYGRAGHLIEAKNFIFENSIS 549

Query: 483 PNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVR 542
               +W S LS  R H N ++G+  +  L++ AP     Y++LSN+ ++  QWD+ + VR
Sbjct: 550 HFTSVWRSFLSSCRLHKNFNMGKSVSEMLLQSAPSDPDAYILLSNMCSSNHQWDEAAIVR 609

Query: 543 EMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTT 602
            +M +RG +K PG S ++ +  +H F VGD+SHPQ  EI+S L  +  +LK  G+  D  
Sbjct: 610 SLMYQRGVKKQPGQSWVQLKDQIHSFTVGDRSHPQDKEIYSYLDSLIGRLKEIGYSLDAK 669

Query: 603 QVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGI 662
            V+  +E++ + E  + +HSE+LA+ F +IN   R+PIRI+KNLR+CNDCH+  K  S +
Sbjct: 670 LVMQDVEEE-QGEVLISHHSEKLALVFSIINTSPRTPIRIMKNLRICNDCHNFFKYASQL 728

Query: 663 YNREIIVRDNSRFHHFKNGSCSCKDFW 689
             REIIVRD  RFHHFK  SCSC ++W
Sbjct: 729 LEREIIVRDTHRFHHFKQSSCSCGEYW 755



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 97/437 (22%), Positives = 192/437 (43%), Gaps = 69/437 (15%)

Query: 126 PC-VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSS---LVSMYAKFGEIDLGRRVFD 181
           PC  +     +G+    + +HG  FK G      +L+S   L+++Y K   +D   ++FD
Sbjct: 35  PCSFLHSTTSIGSPPSLRALHGHYFKKG---SLQILNSANYLLTLYVKSSNLDHAHKLFD 91

Query: 182 AMDDKDLVSWNCLIDGYVKK-GEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKCGK 234
            +  K+  +W  LI G+ +  G  E+   LF EM      P++  ++ + ++   S+   
Sbjct: 92  EITHKNTQTWTILISGFARAAGSSELVFSLFREMQADGACPNQ--YTLSSVLKCCSRENN 149

Query: 235 VEIAREIFYRMPNR----NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAG 290
           ++  + I   +       ++V  N++++ Y+K  + + A   F+ M  +D+++WN MI  
Sbjct: 150 IQFGKGIHAWILRNGVGGDVVLENSILDLYLKCKEFEYAESFFELMIEKDVVSWNIMIGA 209

Query: 291 YELNGRFMEALELLETMLIGDVLP-------------------------------NDATL 319
           Y   G   ++LE+       DV+                                +  T 
Sbjct: 210 YLREGDVEKSLEMFRNFPNKDVVSWNTIIDGLIQCGYERLALEQLYCMVAHGTEFSPVTF 269

Query: 320 VSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAI-- 377
             AL  V+ L+++  GR +H  ++  G   DG + + L++MY KCG ++ A T+ + +  
Sbjct: 270 SIALILVSSLSLVEVGRQLHGRVLTFGLNSDGYIRSSLVEMYGKCGRMDKASTILKDVPL 329

Query: 378 --------------SKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGV 423
                          K ++  W++M+ G   +G     +  F  M    +     T   +
Sbjct: 330 NFLRKGNFGVTCKEPKARMVSWSSMVSGYVWNGKYEDGMKTFRSMVCELIVVDIRTVATI 389

Query: 424 LNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRP 483
           ++AC++AG++  G++  +  I   G+         L+D+  ++G L++A    E +   P
Sbjct: 390 ISACANAGILEFGKQ-IHAYIQKIGLRIDAYVGSSLIDMYSKSGSLDDALMIFEQIK-EP 447

Query: 484 NFVIWMSLLSGARNHGN 500
           N V+W S++SG   HG 
Sbjct: 448 NVVLWTSMISGCALHGQ 464



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 85/361 (23%), Positives = 152/361 (42%), Gaps = 51/361 (14%)

Query: 250 LVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFME-ALELLETML 308
           L S N ++  Y+K+ ++D A +LFD++  ++  TW  +I+G+       E    L   M 
Sbjct: 67  LNSANYLLTLYVKSSNLDHAHKLFDEITHKNTQTWTILISGFARAAGSSELVFSLFREMQ 126

Query: 309 IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKC---- 364
                PN  TL S L   +    +  G+ +H++I++NG   D VL   ++ +Y KC    
Sbjct: 127 ADGACPNQYTLSSVLKCCSRENNIQFGKGIHAWILRNGVGGDVVLENSILDLYLKCKEFE 186

Query: 365 ---------------------------GSIESALTVFRAISKKKVGHWTAMIVGLGMHGM 397
                                      G +E +L +FR    K V  W  +I GL   G 
Sbjct: 187 YAESFFELMIEKDVVSWNIMIGAYLREGDVEKSLEMFRNFPNKDVVSWNTIIDGLIQCGY 246

Query: 398 ATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYG 457
              AL+    M   G + + +TF   L   S   LV  GR+    ++  +G+        
Sbjct: 247 ERLALEQLYCMVAHGTEFSPVTFSIALILVSSLSLVEVGRQLHGRVLT-FGLNSDGYIRS 305

Query: 458 CLVDILCRTGYLEEAKSTIESMPM----RPNF-----------VIWMSLLSGARNHGNKD 502
            LV++  + G +++A + ++ +P+    + NF           V W S++SG   +G  +
Sbjct: 306 SLVEMYGKCGRMDKASTILKDVPLNFLRKGNFGVTCKEPKARMVSWSSMVSGYVWNGKYE 365

Query: 503 IGEYAANNLI-KVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDP--GSSSI 559
            G     +++ ++    I     + +  A AG  +   ++   ++K G R D   GSS I
Sbjct: 366 DGMKTFRSMVCELIVVDIRTVATIISACANAGILEFGKQIHAYIQKIGLRIDAYVGSSLI 425

Query: 560 E 560
           +
Sbjct: 426 D 426



 Score = 43.9 bits (102), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 56/104 (53%), Gaps = 3/104 (2%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +Q+HA   K  L   + + S L+ +Y      +L  A  IF++I + P++VL+  +I   
Sbjct: 403 KQIHAYIQKIGLRIDAYVGSSLIDMYSKS--GSLDDALMIFEQI-KEPNVVLWTSMISGC 459

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEG 141
             + +  EA++LF  +L+  ++P+  T   V+   + +G I+EG
Sbjct: 460 ALHGQGKEAISLFEGMLNLGIIPNEVTFVGVLNACSHVGLIEEG 503


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 256/734 (34%), Positives = 392/734 (53%), Gaps = 86/734 (11%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +Q+H + V +       +++ L+ +Y     +    ++ +FD I +  ++V +N L  CY
Sbjct: 177 KQVHGVVVVSGFEGDVFVANTLVVMYAK--CDEFLDSKRLFDEIPER-NVVSWNALFSCY 233

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
           V      EA+ LF +++   + P+ F+L  ++     L     GK IHG + KLG+ +D 
Sbjct: 234 VQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDP 293

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP-- 215
           F  ++LV MYAK G++     VF+ +   D+VSWN +I G V     E A++L  +M   
Sbjct: 294 FSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRQ 353

Query: 216 ----------DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGD 265
                     + DLF    LVD +SKC  +E AR  F  +P ++L++WNA+I+GY +  +
Sbjct: 354 LHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWE 413

Query: 266 VDSACELFDDMEIR---------------------------------------DLITWNS 286
              A  LF +M                                          D+   NS
Sbjct: 414 DMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNS 473

Query: 287 MIAGYELNGRFMEALELLETMLIGDVL-------------------------------PN 315
           +I  Y       +A  + E   IGD++                               P+
Sbjct: 474 LIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPD 533

Query: 316 DATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFR 375
                S L+A A L+   +G+ +H +I+K GFV+D   G  L+ MY+KCGSI+ A   F 
Sbjct: 534 RFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFS 593

Query: 376 AISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVND 435
            ++++ +  W+AMI GL  HG   QAL LFN+M + G+ P  IT + VL AC+HAGLV +
Sbjct: 594 ELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTE 653

Query: 436 GRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGA 495
            + YF  M   +G +P  EHY C++D+L R G + EA   +  MP   N  +W +LL  A
Sbjct: 654 AKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAA 713

Query: 496 RNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPG 555
           R H + ++G  AA  L  + P+  G +V+L+NIYA+AG+W+ V+EVR +M+    +K+PG
Sbjct: 714 RIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPG 773

Query: 556 SSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKE 615
            S IE +  ++ F+VGD+SH ++ EI++KL E+ + +  AG+VP   ++ L   +Q EKE
Sbjct: 774 MSWIEVKDKVYTFLVGDRSHYRSQEIYAKLDELSDLMDKAGYVP-MVEIDLHDVEQSEKE 832

Query: 616 AELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRF 675
             L +HSE+LA+AFGLI     +PIR+ KNLRVC DCH+  K +  I +REIIVRD +RF
Sbjct: 833 LLLYHHSEKLAVAFGLIATPQGAPIRVKKNLRVCVDCHTAFKYICKIVSREIIVRDINRF 892

Query: 676 HHFKNGSCSCKDFW 689
           HHFK+GSCSC D+W
Sbjct: 893 HHFKDGSCSCGDYW 906



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/353 (25%), Positives = 172/353 (48%), Gaps = 17/353 (4%)

Query: 108 TLFCDLLDRF-LLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSM 166
           T   +L+D+    P + +   ++       +++ G QIH  + K G   D  + + L+++
Sbjct: 41  TAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINL 100

Query: 167 YAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM----PDRDLFSW 222
           Y+K       R++ D   + DLVSW+ LI GY + G    A+  F EM       + F++
Sbjct: 101 YSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTF 160

Query: 223 TCLVDGFSKCGKVEIAREIFYRMP----NRNLVSWNAMINGYMKAGDVDSACELFDDMEI 278
           + ++   S    + I +++   +       ++   N ++  Y K  +   +  LFD++  
Sbjct: 161 SSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPE 220

Query: 279 RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWM 338
           R++++WN++ + Y       EA+ L   M++  + PN+ +L S ++A  GL   ++G+ +
Sbjct: 221 RNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKII 280

Query: 339 HSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMA 398
           H Y++K G+  D      L+ MY+K G +  A++VF  I +  +  W A+I G  +H   
Sbjct: 281 HGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHH 340

Query: 399 TQALDLFNKMCR--------MGMKPTAITFIGVLNACSHAGLVNDGRRYFNMM 443
            QAL+L  +M R        M M+      +G+++  S   L+ D R  FN++
Sbjct: 341 EQALELLGQMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLL 393



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 83/184 (45%), Gaps = 2/184 (1%)

Query: 310 GDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIES 369
           G+  P   +    LS       L  G  +H++I K+G   D  +   LI +YSKC     
Sbjct: 50  GNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGY 109

Query: 370 ALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSH 429
           A  +    S+  +  W+A+I G   +G+   AL  F++M  +G+K    TF  VL ACS 
Sbjct: 110 ARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSI 169

Query: 430 AGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWM 489
              +  G++   +++   G E  +     LV +  +     ++K   + +P R N V W 
Sbjct: 170 VKDLRIGKQVHGVVVVS-GFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPER-NVVSWN 227

Query: 490 SLLS 493
           +L S
Sbjct: 228 ALFS 231


>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 240/568 (42%), Positives = 346/568 (60%), Gaps = 16/568 (2%)

Query: 137 AIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYA--KFGEIDLGRRVFDAMDDKDLVSWNCL 194
           +I + KQ H L+ +     +    S L+S  A    G+++  R++F  M + D    N +
Sbjct: 23  SISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNTM 82

Query: 195 IDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAR----EIFYRMP 246
           I GY +      A+ L+  M +R    D +++  ++   ++ G V++ R    E+     
Sbjct: 83  IRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGF 142

Query: 247 NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLET 306
             +L   NA+I  Y   G    AC++FD+  +RD++TWN MI  +   G   +A +LL+ 
Sbjct: 143 GSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDE 202

Query: 307 MLIGDVL-PNDATLVSALSAVAGLAVLNKGRWMHSY---IVKNGFVVDGVLGTLLIQMYS 362
           M   D L P++ T+VS + A A L  L +G+++HSY   + K     D VL T L+ MY+
Sbjct: 203 MTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELDKFEINCDLVLETALVDMYA 262

Query: 363 KCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIG 422
           KCGSI+ AL VFR +  + V  W A+I GL MHG    A+ LF++M    + P  +TFI 
Sbjct: 263 KCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIA 322

Query: 423 VLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMR 482
           +L ACSHAGLV++G   F  M N + IEP +EHYGC+VD+LCR   +++A + IE+MP++
Sbjct: 323 LLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIK 382

Query: 483 PNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVR 542
            N V+W +LL   R+ G+ D+ E     +I++ PD+ G YV+LSN+YA   QWD   ++R
Sbjct: 383 ANSVLWATLLGACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLR 442

Query: 543 EMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKA-AGHVPDT 601
           + MK +G  K PG S IE  G++H+FV GD+SH QT++I++ + EM  ++    GHVP T
Sbjct: 443 KQMKNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTRRVNLDGGHVPGT 502

Query: 602 TQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSG 661
             VL  IE++ EKE  L  HSE+LAIA GLI+  S SPIRIVKNLRVCNDCHS  K+ S 
Sbjct: 503 ANVLFDIEEE-EKEHSLFLHSEKLAIALGLISTPSGSPIRIVKNLRVCNDCHSFLKVTSK 561

Query: 662 IYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           +YNREI+ RD SRFHHFK GSCSC DFW
Sbjct: 562 VYNREIVARDRSRFHHFKEGSCSCMDFW 589



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 105/331 (31%), Positives = 169/331 (51%), Gaps = 52/331 (15%)

Query: 28  LKFSSTH----KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQ 83
           + F  TH     +T+Q HAL ++T+L+++   SS+L+S     H  +L+YAR +F + +Q
Sbjct: 14  VDFLKTHCTSISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQ-MQ 72

Query: 84  HPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQ 143
           +P   + N +I+ Y  +Q  +EA++L+  +++R +  DN+T P V+   ARLGA+K G++
Sbjct: 73  NPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRR 132

Query: 144 IHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGE 203
            H  V K GFG D FV+++L+  Y   G       VFD    +D+V+WN +I+ ++ KG 
Sbjct: 133 FHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGL 192

Query: 204 VEVAMKLFDEM-------PDR------------------------------------DLF 220
            E A  L DEM       PD                                     DL 
Sbjct: 193 SEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELDKFEINCDLV 252

Query: 221 SWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDME--- 277
             T LVD ++KCG +++A ++F RM  RN+ +WNA+I G    G  + A  LFD ME   
Sbjct: 253 LETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDK 312

Query: 278 -IRDLITWNSMIAGYELNGRFMEALELLETM 307
            + D +T+ +++      G   E L + + M
Sbjct: 313 LMPDDVTFIALLCACSHAGLVDEGLAMFQAM 343


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 234/612 (38%), Positives = 371/612 (60%), Gaps = 15/612 (2%)

Query: 88  VLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGL 147
           VL+  ++  Y  N   ++A+  F  +  + +  + +T P ++   + + A   G+Q+HG 
Sbjct: 231 VLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGF 290

Query: 148 VFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVA 207
           + K GFG + +V S+LV MYAK G++   + + + M+D D+VSWN L+ G+V+ G  E A
Sbjct: 291 IVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEA 350

Query: 208 MKLFDEMPDRDL----FSW----TCLVDGFSKCGKVE--IAREIFYRMPNRNLVSWNAMI 257
           ++LF  M  R++    +++     C V G      V   I +  F    N  LVS NA++
Sbjct: 351 LRLFKNMHGRNMKIDDYTFPSVLNCCVVGSINPKSVHGLIIKTGF---ENYKLVS-NALV 406

Query: 258 NGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDA 317
           + Y K GD+D A  +F+ M  +D+I+W S++ GY  N    E+L++   M +  V P+  
Sbjct: 407 DMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQF 466

Query: 318 TLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAI 377
            + S LSA A L +L  G+ +H   +K+G      +   L+ MY+KCG ++ A  +F ++
Sbjct: 467 IVASILSACAELTLLEFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSM 526

Query: 378 SKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGR 437
             K V  WTA+IVG   +G    +L  ++ M   G +P  ITFIG+L ACSHAGLV++GR
Sbjct: 527 QVKDVITWTAIIVGYAQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFACSHAGLVDEGR 586

Query: 438 RYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARN 497
           +YF  M   YGI+P  EHY C++D+  R+G L+EAK  ++ M ++P+  +W SLLS  R 
Sbjct: 587 KYFQQMNKVYGIKPGPEHYACMIDLFGRSGKLDEAKQLLDQMDVKPDATVWKSLLSACRV 646

Query: 498 HGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSS 557
           H N ++ E AA NL ++ P     YV+LSN+Y+A+ +W+ V+++R++MK +G  K+PG S
Sbjct: 647 HENLELAERAATNLFELEPMNAMPYVMLSNMYSASRKWNDVAKIRKLMKSKGIVKEPGCS 706

Query: 558 SIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAE 617
            +E    ++ F+  D+ HP+  EI++K+ E+  ++K AG+VPD +  L  + D++ KE  
Sbjct: 707 WLEINSRVNTFISDDRGHPREAEIYTKIDEIILRIKEAGYVPDMSFSLHDM-DKEGKEVG 765

Query: 618 LENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHH 677
           L  HSE+LA+AFGL+     +PIRI KNLRVC DCHS  K +S ++ R II+RD++ FHH
Sbjct: 766 LAYHSEKLAVAFGLLAAPPSAPIRIFKNLRVCGDCHSAMKYISRVFTRHIILRDSNCFHH 825

Query: 678 FKNGSCSCKDFW 689
           F+ G CSC D+W
Sbjct: 826 FREGECSCGDYW 837



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 108/405 (26%), Positives = 199/405 (49%), Gaps = 14/405 (3%)

Query: 105 EALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLV 164
           EA  LF  +         FTL  V++  + LG I+ G+ IHG V K GF  + FV++ LV
Sbjct: 145 EAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLV 204

Query: 165 SMYAKFGEIDLGRRVFDAM--DDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL--- 219
            MYAK   +     +F  +  D K+ V W  ++ GY + G+   A++ F  M  + +   
Sbjct: 205 DMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECN 264

Query: 220 -FSWTCLVDGFS----KCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFD 274
            +++  ++   S    +C   ++   I       N+   +A+++ Y K GD+ +A  + +
Sbjct: 265 QYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLE 324

Query: 275 DMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNK 334
            ME  D+++WNS++ G+  +G   EAL L + M   ++  +D T  S L+     ++  K
Sbjct: 325 TMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCCVVGSINPK 384

Query: 335 GRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGM 394
              +H  I+K GF    ++   L+ MY+K G ++ A TVF  + +K V  WT+++ G   
Sbjct: 385 S--VHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQ 442

Query: 395 HGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIE 454
           +    ++L +F  M   G+ P       +L+AC+   L+  G++     I   G+  +  
Sbjct: 443 NNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDFIKS-GLRWSQS 501

Query: 455 HYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
            Y  LV +  + G L++A +   SM ++ + + W +++ G   +G
Sbjct: 502 VYNSLVAMYAKCGCLDDADAIFVSMQVK-DVITWTAIIVGYAQNG 545



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 89/277 (32%), Positives = 144/277 (51%), Gaps = 4/277 (1%)

Query: 225 LVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITW 284
           L++  SK G+V  AR++F +MP ++  SWN MI+ Y+  G +  A ELFD    +  ITW
Sbjct: 71  LLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSCKSSITW 130

Query: 285 NSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVK 344
           +S+I+GY   G  +EA +L  +M +     +  TL S L   + L ++  G  +H ++VK
Sbjct: 131 SSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVK 190

Query: 345 NGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGH--WTAMIVGLGMHGMATQAL 402
           NGF  +  + T L+ MY+KC  +  A  +F+ +   +  H  WTAM+ G   +G   +A+
Sbjct: 191 NGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAV 250

Query: 403 DLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDI 462
           + F  M   G++    TF  +L ACS       G +    ++   G    +     LVD+
Sbjct: 251 EFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKS-GFGSNVYVQSALVDM 309

Query: 463 LCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
             + G L+ AK+ +E+M    + V W SL+ G   HG
Sbjct: 310 YAKCGDLKNAKNMLETME-DDDVVSWNSLMVGFVRHG 345



 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 114/416 (27%), Positives = 192/416 (46%), Gaps = 52/416 (12%)

Query: 161 SSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLF 220
           + L++  +K G+++  R++FD M  KD  SWN +I  YV  G +  A +LFD    +   
Sbjct: 69  NQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSCKSSI 128

Query: 221 SWTCLVDGFSKCG-KVEIAREIFYRM-------------------PNRNLVSWNAMING- 259
           +W+ ++ G+ K G KVE A ++F  M                    +  L+    MI+G 
Sbjct: 129 TWSSIISGYCKFGCKVE-AFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGF 187

Query: 260 -------------------YMKAGDVDSACELFDDMEI--RDLITWNSMIAGYELNGRFM 298
                              Y K   V  A  LF  +E   ++ + W +M+ GY  NG   
Sbjct: 188 VVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGY 247

Query: 299 EALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLI 358
           +A+E    M    V  N  T  + L+A + +     G  +H +IVK+GF  +  + + L+
Sbjct: 248 KAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSALV 307

Query: 359 QMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI 418
            MY+KCG +++A  +   +    V  W +++VG   HG+  +AL LF  M    MK    
Sbjct: 308 DMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDY 367

Query: 419 TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIES 478
           TF  VLN C   G +N   +  + +I   G E        LVD+  +TG ++ A +  E 
Sbjct: 368 TFPSVLNCCV-VGSINP--KSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEK 424

Query: 479 MPMRPNFVIWMSLLSG-ARNHGNKD-IGEYAANNLIKVAPDTIGCYVVLSNIYAAA 532
           M +  + + W SL++G A+N+ +++ +  +    +  V PD    ++V S + A A
Sbjct: 425 M-LEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQ---FIVASILSACA 476



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 142/278 (51%), Gaps = 17/278 (6%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           + +H L +KT    +  +S+ L+ +Y      ++  A ++F+++L+   ++ +  L+  Y
Sbjct: 384 KSVHGLIIKTGFENYKLVSNALVDMYA--KTGDMDCAYTVFEKMLE-KDVISWTSLVTGY 440

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
             N    E+L +FCD+    + PD F +  ++   A L  ++ GKQ+H    K G  + +
Sbjct: 441 AQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDFIKSGLRWSQ 500

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
            V +SLV+MYAK G +D    +F +M  KD+++W  +I GY + G+   ++K +D M   
Sbjct: 501 SVYNSLVAMYAKCGCLDDADAIFVSMQVKDVITWTAIIVGYAQNGKGRNSLKFYDAMVSS 560

Query: 218 ----DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS-----WNAMINGYMKAGDVDS 268
               D  ++  L+   S  G V+  R+ F +M     +      +  MI+ + ++G +D 
Sbjct: 561 GTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKPGPEHYACMIDLFGRSGKLDE 620

Query: 269 ACELFDDMEIR-DLITWNSMIAGYELNGRFMEALELLE 305
           A +L D M+++ D   W S+++      R  E LEL E
Sbjct: 621 AKQLLDQMDVKPDATVWKSLLSA----CRVHENLELAE 654


>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 255/665 (38%), Positives = 364/665 (54%), Gaps = 70/665 (10%)

Query: 26  NILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHP 85
           ++L   ST +   +LHA  V+  L     ++ RL   Y       L ++ ++  R  + P
Sbjct: 29  SLLAACSTARRASELHAAVVRKGLDSDRAVAFRLQRAYAAS--GRLDHSLTLLGRT-KDP 85

Query: 86  SLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIH 145
           + + Y   I  +         L L  D+L   LLP   TL   +     L     G+ +H
Sbjct: 86  TTIFYTSAIHAHSSRGLHLPGLALLSDMLSEGLLPTAHTLSASLPACRGLSL---GRALH 142

Query: 146 GLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVE 205
              FKL    D +V ++                               L+  Y + G+  
Sbjct: 143 AYAFKLALSGDSYVATA-------------------------------LLSMYARAGDAA 171

Query: 206 VAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGD 265
            A  LFDEMPD                                ++VS  AM+  Y   G 
Sbjct: 172 AARALFDEMPDP-------------------------------HVVSVTAMLTCYANMGA 200

Query: 266 VDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSA 325
           +D A  LFD +  +D I WN+MI GY  +G+  EAL+L   ML     P++ T+V  LSA
Sbjct: 201 LDDARRLFDGLPRKDFICWNAMIDGYTQHGKPNEALQLFRRMLRSSAEPDEVTVVLVLSA 260

Query: 326 VAGLAVLNKGRWMHSYIVKNGFVVDGV-LGTLLIQMYSKCGSIESALTVFRAISKKKVGH 384
           VA L  +  G+W+HSY+  +  V   V + T L+ MY KCGS+E A+ VF  I  K +  
Sbjct: 261 VAQLGTVESGKWLHSYVKNSRCVQLNVRVATALVDMYCKCGSLEDAVAVFHGIGNKDIVV 320

Query: 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMI 444
           W AMI G  MHG + +AL++F ++   G+ PT ITFIG+LNACSH+GLV +GR +F  M 
Sbjct: 321 WNAMINGYAMHGDSRKALEMFVQLRDQGLWPTDITFIGLLNACSHSGLVEEGRSFFQSME 380

Query: 445 NDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIG 504
           ++YGI+P IEHYGC+VD+L R G +EEA   ++S+ + P+ V+W+SLL+  R H N  +G
Sbjct: 381 HEYGIDPKIEHYGCMVDLLGRAGLIEEAFHLVQSLTITPDAVMWVSLLAACRLHKNMALG 440

Query: 505 EYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGV 564
           +  A+ L+       G Y++LSNIYAA G+W++V+ VR MMK  G +K+PG S+IE    
Sbjct: 441 QRIADFLVANGLANSGMYILLSNIYAAVGKWEEVARVRSMMKASGIQKEPGCSAIEIDRK 500

Query: 565 LHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSER 624
           ++EFV GD SHP TDEI++ L +M   +K  GHVP T  VL  + D+  KE  L  HSE+
Sbjct: 501 VYEFVAGDMSHPCTDEIYAMLDKMNALVKEHGHVPQTELVLHDL-DEATKEKALAVHSEK 559

Query: 625 LAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCS 684
           LA+AFGLI+ +  S I+IVKNLR C+DCH+V KL+S I +R+I+ RD +RFHHF +GSC+
Sbjct: 560 LAVAFGLISSRPGSTIKIVKNLRACSDCHAVLKLISKITSRKIVFRDRNRFHHFVDGSCT 619

Query: 685 CKDFW 689
           C D+W
Sbjct: 620 CGDYW 624



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/247 (19%), Positives = 94/247 (38%), Gaps = 34/247 (13%)

Query: 322 ALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKK 381
           A S +A  +   +   +H+ +V+ G   D  +   L + Y+  G ++ +LT+        
Sbjct: 27  AASLLAACSTARRASELHAAVVRKGLDSDRAVAFRLQRAYAASGRLDHSLTLLGRTKDPT 86

Query: 382 VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRY-F 440
              +T+ I      G+    L L + M   G+ PTA T    L AC    L      Y F
Sbjct: 87  TIFYTSAIHAHSSRGLHLPGLALLSDMLSEGLLPTAHTLSASLPACRGLSLGRALHAYAF 146

Query: 441 NMMIN--------------------------DYGIEPTIEHYGCLVDILCRTGYLEEAKS 474
            + ++                          D   +P +     ++      G L++A+ 
Sbjct: 147 KLALSGDSYVATALLSMYARAGDAAAARALFDEMPDPHVVSVTAMLTCYANMGALDDARR 206

Query: 475 TIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVA--PDTIGCYVVLSNI---- 528
             + +P R +F+ W +++ G   HG  +        +++ +  PD +   +VLS +    
Sbjct: 207 LFDGLP-RKDFICWNAMIDGYTQHGKPNEALQLFRRMLRSSAEPDEVTVVLVLSAVAQLG 265

Query: 529 YAAAGQW 535
              +G+W
Sbjct: 266 TVESGKW 272


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 247/661 (37%), Positives = 380/661 (57%), Gaps = 13/661 (1%)

Query: 35   KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
            KE +++H   +K     ++ + + L++ Y       +  A ++FD  L  P +V +N +I
Sbjct: 487  KECKRVHGYVLKLGFGSNTAVVNSLIAAYF--KFGGVESAHNLFDE-LSEPDVVSWNSMI 543

Query: 95   KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
               V N  S   L +F  +L   +  D  TL  V+   A +G +  G+ +HG   K  F 
Sbjct: 544  NGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFS 603

Query: 155  FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
             +    ++L+ MY+K G ++    VF  M D  +VSW   I  YV++G    A+ LFDEM
Sbjct: 604  EEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEM 663

Query: 215  PDR----DLFSWTCLVDGFSKCGKVEIAREIF-YRMPN---RNLVSWNAMINGYMKAGDV 266
              +    D+++ T +V   +    ++  R++  Y + N    NL   NA+IN Y K G V
Sbjct: 664  QSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSV 723

Query: 267  DSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326
            + A  +F  + ++D+++WN+MI GY  N    EALEL   M      P+D T+   L A 
Sbjct: 724  EEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQ-KQFKPDDITMACVLPAC 782

Query: 327  AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWT 386
            AGLA L+KGR +H +I++ G+  D  +   L+ MY+KCG +  A  +F  I KK +  WT
Sbjct: 783  AGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWT 842

Query: 387  AMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIND 446
             MI G GMHG   +A+  FN+M   G++P   +F  +LNACSH+GL+N+G ++FN M N+
Sbjct: 843  VMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLLNEGWKFFNSMRNE 902

Query: 447  YGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEY 506
             G+EP +EHY C+VD+L R G L +A   IESMP++P+  IW  LLSG R H +  + E 
Sbjct: 903  CGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEK 962

Query: 507  AANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLH 566
             A ++ ++ PD    YVVL+N+YA A +W++V ++R+ M+KRGF+++PG S IE  G  +
Sbjct: 963  VAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFN 1022

Query: 567  EFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLA 626
             FV G+  HPQ   I   L ++  +++   +      VL+  ED  EKE     HSE+ A
Sbjct: 1023 IFVAGNSKHPQAKRIDVLLRKLTMQMQNEDYFSMFRYVLI-NEDDMEKEMIQCGHSEKSA 1081

Query: 627  IAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCK 686
            +AFG++N+     +R+ KN RVC DCH + K +S    REI++RD++RFHHFK+G CSC+
Sbjct: 1082 MAFGILNLPPGRTVRVSKNQRVCGDCHEMGKFMSKTTKREIVLRDSNRFHHFKDGLCSCR 1141

Query: 687  D 687
            D
Sbjct: 1142 D 1142



 Score =  222 bits (566), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 146/503 (29%), Positives = 262/503 (52%), Gaps = 18/503 (3%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           ++ +++H++ +   +     + ++L+ +YV+    +L   R IFD+I+ +  + L+NLL+
Sbjct: 386 EDGKRVHSVIISNGISIDEALGAKLVFMYVN--CGDLVQGRKIFDKIM-NDKVFLWNLLM 442

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
             Y       E+++LF  +    ++ + +T  CV+K  A LG +KE K++HG V KLGFG
Sbjct: 443 SEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFG 502

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
            +  V++SL++ Y KFG ++    +FD + + D+VSWN +I+G V  G     +++F +M
Sbjct: 503 SNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQM 562

Query: 215 ----PDRDLFSWTCLVDGFSKCGKVEIAREI----FYRMPNRNLVSWNAMINGYMKAGDV 266
                + DL +   ++  ++  G + + R +         +  +V  N +++ Y K G++
Sbjct: 563 LILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNL 622

Query: 267 DSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326
           + A E+F  M    +++W S IA Y   G + +A+ L + M    V P+  T+ S + A 
Sbjct: 623 NGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHAC 682

Query: 327 AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWT 386
           A  + L+KGR +HSY++KNG   +  +   LI MY+KCGS+E A  VF  I  K +  W 
Sbjct: 683 ACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWN 742

Query: 387 AMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIND 446
            MI G   + +  +AL+LF  M +   KP  IT   VL AC+    ++ GR     ++  
Sbjct: 743 TMIGGYSQNSLPNEALELFLDMQKQ-FKPDDITMACVLPACAGLAALDKGREIHGHILRR 801

Query: 447 YGIEPTIEHYGC-LVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNH--GNKDI 503
                   H  C LVD+  + G L  A+   + +P + + + W  +++G   H  GN+ I
Sbjct: 802 GYFSDL--HVACALVDMYAKCGLLVLAQLLFDMIP-KKDLISWTVMIAGYGMHGFGNEAI 858

Query: 504 GEYAANNLIKVAPDTIGCYVVLS 526
             +    +  + PD     V+L+
Sbjct: 859 STFNEMRIAGIEPDESSFSVILN 881



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 124/435 (28%), Positives = 222/435 (51%), Gaps = 12/435 (2%)

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD 187
           V++  A   ++++GK++H ++   G   D+ + + LV MY   G++  GR++FD + +  
Sbjct: 375 VLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDK 434

Query: 188 LVSWNCLIDGYVKKGEVEVAMKLFDEMPD----RDLFSWTCLVDGFSKCGKVEIAREIF- 242
           +  WN L+  Y K G    ++ LF +M       + +++TC++  F+  GKV+  + +  
Sbjct: 435 VFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHG 494

Query: 243 YRMP---NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFME 299
           Y +      N    N++I  Y K G V+SA  LFD++   D+++WNSMI G  +NG    
Sbjct: 495 YVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGN 554

Query: 300 ALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQ 359
            LE+   MLI  V  +  TLVS L A A +  L+ GR +H + VK  F  + V    L+ 
Sbjct: 555 GLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLD 614

Query: 360 MYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAIT 419
           MYSKCG++  A  VF  +    +  WT+ I      G+ + A+ LF++M   G++P   T
Sbjct: 615 MYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYT 674

Query: 420 FIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM 479
              +++AC+ +  ++ GR   + +I + G+   +     L+++  + G +EEA+     +
Sbjct: 675 VTSIVHACACSSSLDKGRDVHSYVIKN-GMGSNLPVTNALINMYAKCGSVEEARLVFSKI 733

Query: 480 PMRPNFVIWMSLLSG-ARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKV 538
           P++ + V W +++ G ++N    +  E   +   +  PD I    VL    A     DK 
Sbjct: 734 PVK-DIVSWNTMIGGYSQNSLPNEALELFLDMQKQFKPDDITMACVLPAC-AGLAALDKG 791

Query: 539 SEVREMMKKRGFRKD 553
            E+   + +RG+  D
Sbjct: 792 REIHGHILRRGYFSD 806



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 92/215 (42%), Gaps = 4/215 (1%)

Query: 285 NSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVK 344
           N+ I  +   G    A+ELL      ++  N  +  S L   A    L  G+ +HS I+ 
Sbjct: 340 NAKINKFCEMGDLRNAIELLTKSKSYELGLN--SYCSVLQLCAEKKSLEDGKRVHSVIIS 397

Query: 345 NGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDL 404
           NG  +D  LG  L+ MY  CG +     +F  I   KV  W  ++      G   +++ L
Sbjct: 398 NGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSL 457

Query: 405 FNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILC 464
           F KM ++G+     TF  VL   +  G V + +R    ++   G          L+    
Sbjct: 458 FKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLK-LGFGSNTAVVNSLIAAYF 516

Query: 465 RTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
           + G +E A +  + +   P+ V W S+++G   +G
Sbjct: 517 KFGGVESAHNLFDELS-EPDVVSWNSMINGCVVNG 550


>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 580

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 233/581 (40%), Positives = 343/581 (59%), Gaps = 18/581 (3%)

Query: 121 DNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLV--SMYAKFGEIDLGRR 178
           D  +L   IK   R+G +K    I   + +     D F+ S L+  S     G +    R
Sbjct: 6   DQGSLVAAIKRCTRVGDLK---AIQAHMVRANLTQDTFLTSKLIESSAVTLSGHVAYAHR 62

Query: 179 VFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKC 232
           +F      +L  WN +I GY        A+ L+ +M      P+   F +  ++    K 
Sbjct: 63  IFSCTHHPNLFMWNTIIRGYSISDSPITAIALYRDMFLCGISPNSYTFGF--VLKACCKL 120

Query: 233 GKVEIAREIFYRMPNRNLVSWNAMING----YMKAGDVDSACELFDDMEIRDLITWNSMI 288
            ++   +E+  ++    L     ++NG    Y   G +D AC +FD+M   D  +W++M+
Sbjct: 121 LRLCEGQELHSQIVKVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMV 180

Query: 289 AGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFV 348
           +GY  NG+ +EAL+L   M   +V  +  TL S +     L  L+ G+W+HSY+ K G  
Sbjct: 181 SGYAQNGQAVEALKLFREMQAENVSSDAFTLASVVGVCGDLGALDLGKWVHSYMDKEGVK 240

Query: 349 VDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKM 408
           +D VLGT L+ MYSKCGS+++AL VF+ ++++ V  W+ MI G  +HG   +AL LF+ M
Sbjct: 241 IDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTAWSTMIAGYAIHGHGEKALQLFDAM 300

Query: 409 CRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGY 468
            R    P  +TF  VL+ACSH+GLV  G + F  M  +Y I P I+HYGC+VD+ CR G 
Sbjct: 301 KRSKTIPNCVTFTSVLSACSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGM 360

Query: 469 LEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNI 528
           +  A   I++MP+ PN V+W +LL   + HG KD+GE+ +  ++K+ P +   YV++SN+
Sbjct: 361 VGHAHKFIQTMPIEPNVVLWRTLLGACKTHGYKDLGEHISRKILKLDPSSPENYVLVSNV 420

Query: 529 YAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEM 588
           YA+ G+W  V +VR +MK +  +K  G SSIE   ++H+F++GD+SHP+ ++I+  L +M
Sbjct: 421 YASLGRWSSVCQVRSLMKDKAPKKQHGWSSIEINFMVHKFIMGDESHPEREKIYGMLHQM 480

Query: 589 RNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRV 648
             KLK  GHV  T  VL  I D++EKE  L  HSERLAIA+GL++  + SPIRIVKNLRV
Sbjct: 481 ARKLKQVGHVNSTVDVLHDI-DEEEKEYALGLHSERLAIAYGLLHTPNGSPIRIVKNLRV 539

Query: 649 CNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           C DCH V KL+S +YNREIIVRD  RFHHF+   CSC D+W
Sbjct: 540 CRDCHEVIKLISEVYNREIIVRDRVRFHHFRERGCSCNDYW 580



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 160/308 (51%), Gaps = 9/308 (2%)

Query: 36  ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIK 95
           + + + A  V+ NL   + ++S+L+         ++ YA  IF     HP+L ++N +I+
Sbjct: 22  DLKAIQAHMVRANLTQDTFLTSKLIESSAVTLSGHVAYAHRIFS-CTHHPNLFMWNTIIR 80

Query: 96  CYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF 155
            Y  +     A+ L+ D+    + P+++T   V+K   +L  + EG+++H  + K+G  F
Sbjct: 81  GYSISDSPITAIALYRDMFLCGISPNSYTFGFVLKACCKLLRLCEGQELHSQIVKVGLDF 140

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP 215
           +  +++ L+ +YA  G +D    +FD M + D  SW+ ++ GY + G+   A+KLF EM 
Sbjct: 141 ETPLVNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYAQNGQAVEALKLFREMQ 200

Query: 216 ----DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR----NLVSWNAMINGYMKAGDVD 267
                 D F+   +V      G +++ + +   M       ++V   A++  Y K G +D
Sbjct: 201 AENVSSDAFTLASVVGVCGDLGALDLGKWVHSYMDKEGVKIDVVLGTALVGMYSKCGSLD 260

Query: 268 SACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVA 327
           +A ++F  M  RD+  W++MIAGY ++G   +AL+L + M     +PN  T  S LSA +
Sbjct: 261 NALKVFQGMAERDVTAWSTMIAGYAIHGHGEKALQLFDAMKRSKTIPNCVTFTSVLSACS 320

Query: 328 GLAVLNKG 335
              ++ KG
Sbjct: 321 HSGLVEKG 328


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 243/662 (36%), Positives = 380/662 (57%), Gaps = 12/662 (1%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           KE   +H +  K  +     I + LLS+Y       L  AR +F ++    S V +N +I
Sbjct: 239 KEGVAVHGVIEKIGIAGDVIIGNGLLSMYF--KFERLREARRVFSKMAVKDS-VTWNTMI 295

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
             Y    R   ++ LF D++D F+ PD  ++   I+   + G ++ GK +H  +   GF 
Sbjct: 296 CGYAQLGRHEASVKLFMDMIDGFV-PDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFE 354

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
            D    + L+ MYAK G++   + VFD    KD V+WN LI+GY + G  +  ++ F  M
Sbjct: 355 CDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMM 414

Query: 215 P---DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPN----RNLVSWNAMINGYMKAGDVD 267
                 D  ++  L+  FS+   +   R I   +        L+  N++++ Y K G++D
Sbjct: 415 KMERKPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMD 474

Query: 268 SACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVA 327
              ++F  M   D+I+WN++IA            +++  M    ++P++AT++  L   +
Sbjct: 475 DLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCS 534

Query: 328 GLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTA 387
            LAV  +G+ +H YI K+GF  +  +G  LI+MYSKCGS+E+ + VF+ + +K V  WTA
Sbjct: 535 LLAVRRQGKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTA 594

Query: 388 MIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDY 447
           +I   GM+G   +AL  F  M   G+ P ++ FI  + ACSH+G+V +G R+F+ M  DY
Sbjct: 595 LISAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDY 654

Query: 448 GIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYA 507
            +EP +EHY C+VD+L R+G L +A+  I SMPM+P+  +W +LLS  R  GN +I +  
Sbjct: 655 NLEPRMEHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRV 714

Query: 508 ANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHE 567
           +  ++++  D  G YV++SNIYA  G+WD+V  VR  MK +G +K+PGSS IE +  ++ 
Sbjct: 715 SKKILELNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYV 774

Query: 568 FVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAI 627
           F  GDKS  Q D++   L  +   +   G+V D    L  +E+  +++  L  HSERLAI
Sbjct: 775 FRTGDKSFEQYDKVKDLLEYLVRLMAKEGYVADLQFALHDVEEDDKRDM-LCGHSERLAI 833

Query: 628 AFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKD 687
           AFGL+N K  SP+ ++KNLRVC DCH+VTK ++ I  REI+VRD +RFH FK+G+CSC D
Sbjct: 834 AFGLLNTKPGSPLLVMKNLRVCGDCHTVTKYITKIMQREILVRDANRFHRFKDGACSCGD 893

Query: 688 FW 689
            W
Sbjct: 894 HW 895



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 140/475 (29%), Positives = 235/475 (49%), Gaps = 15/475 (3%)

Query: 55  ISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL 114
           I + L+ +Y      +L  AR +F+ +    S V +N LI  Y  N    +AL ++    
Sbjct: 158 IGNALIDMY--SRFVDLDNARYVFEEMSNRDS-VSWNSLISGYCSNGFWEDALDMYHKFR 214

Query: 115 DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEID 174
              ++PD FT+  V+     L A+KEG  +HG++ K+G   D  + + L+SMY KF  + 
Sbjct: 215 MTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLR 274

Query: 175 LGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD---RDLFSWTCLVDGFSK 231
             RRVF  M  KD V+WN +I GY + G  E ++KLF +M D    D+ S T  +    +
Sbjct: 275 EARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMIDGFVPDMLSITSTIRACGQ 334

Query: 232 CGKVEIAREIFYRMPNR----NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSM 287
            G +++ + +   +       + V+ N +I+ Y K GD+ +A E+FD  + +D +TWNS+
Sbjct: 335 SGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSL 394

Query: 288 IAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGF 347
           I GY  +G + E LE  + M + +  P+  T V  LS  + LA +N+GR +H  ++K GF
Sbjct: 395 INGYTQSGYYKEGLESFKMMKM-ERKPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGF 453

Query: 348 VVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNK 407
             + ++G  L+ +Y+KCG ++  L VF  +S   +  W  +I         T    + N+
Sbjct: 454 EAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINE 513

Query: 408 MCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTG 467
           M   G+ P   T +G+L  CS   +   G+     +    G E  +     L+++  + G
Sbjct: 514 MRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKS-GFESNVPIGNALIEMYSKCG 572

Query: 468 YLEEAKSTIESMPMRPNFVIWMSLLS--GARNHGNKDIGEYAANNLIKVAPDTIG 520
            LE      + M  + + V W +L+S  G    G K +  +    L  V PD++ 
Sbjct: 573 SLENCIKVFKYMKEK-DVVTWTALISAFGMYGEGKKALKAFQDMELSGVLPDSVA 626



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 139/510 (27%), Positives = 252/510 (49%), Gaps = 29/510 (5%)

Query: 20  PSR--LHWNILKFSSTHKETQQL---HALSVKTNLIYHSGISSRLLSLYVDPHINNLHYA 74
           PS+  L  ++LK  S+ K T QL   H+L + + L      S +L+S Y    + +   +
Sbjct: 16  PSQEFLRSSLLKTLSSAKNTPQLRTVHSLIITSGLSLSVIFSGKLISKYA--QVKDPISS 73

Query: 75  RSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAAR 134
            S+F  I    ++ L+N +I+    N    +AL  + ++ ++ L PD FT P VI   AR
Sbjct: 74  VSVFRSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCAR 133

Query: 135 LGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCL 194
           +  ++ G  +H    ++GF  D ++ ++L+ MY++F ++D  R VF+ M ++D VSWN L
Sbjct: 134 ILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSL 193

Query: 195 IDGYVKKGEVEVAMKLFDE------MPDRDLFSWTCLVDGFSKCGKVEIARE------IF 242
           I GY   G  E A+ ++ +      +PD    S   L      CG +   +E      + 
Sbjct: 194 ISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLA-----CGSLMAVKEGVAVHGVI 248

Query: 243 YRMP-NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEAL 301
            ++    +++  N +++ Y K   +  A  +F  M ++D +TWN+MI GY   GR   ++
Sbjct: 249 EKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASV 308

Query: 302 ELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMY 361
           +L   M+ G V P+  ++ S + A      L  G+++H Y++ +GF  D V   +LI MY
Sbjct: 309 KLFMDMIDGFV-PDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMY 367

Query: 362 SKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFI 421
           +KCG + +A  VF     K    W ++I G    G   + L+ F KM +M  KP ++TF+
Sbjct: 368 AKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESF-KMMKMERKPDSVTFV 426

Query: 422 GVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPM 481
            +L+  S    +N GR     +I  +G E  +     L+D+  + G +++       M  
Sbjct: 427 LLLSIFSQLADINQGRGIHCDVIK-FGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSA 485

Query: 482 RPNFVIWMSLLSGARNHGNKDIGEYAANNL 511
             + + W ++++ + +  +  +G    N +
Sbjct: 486 H-DIISWNTVIASSVHFDDCTVGFQMINEM 514


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 234/661 (35%), Positives = 383/661 (57%), Gaps = 13/661 (1%)

Query: 38   QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
            +Q+H + V++ L     + + L+++YV     ++  AR++F + +    LV +N +I   
Sbjct: 926  KQIHGIVVRSGLDQVVSVGNCLINMYV--KTGSVSRARTVFWQ-MNEVDLVSWNTMISGC 982

Query: 98   VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGA-IKEGKQIHGLVFKLGFGFD 156
              +     ++ +F DLL   LLPD FT+  V++  + LG       QIH    K G   D
Sbjct: 983  ALSGLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLD 1042

Query: 157  KFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD 216
             FV ++L+ +Y+K G+++    +F   D  DL SWN ++ GY+  G+   A++L+  M +
Sbjct: 1043 SFVSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQE 1102

Query: 217  R-DLFSWTCLVDGFSKCGKV-------EIAREIFYRMPNRNLVSWNAMINGYMKAGDVDS 268
              +  +   L +     G +       +I   +  R  N +L   + +++ Y+K G+++S
Sbjct: 1103 SGERANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMES 1162

Query: 269  ACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAG 328
            A  +F+++   D + W +MI+G   NG+   AL     M +  V P++ T  + + A + 
Sbjct: 1163 ARRIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSL 1222

Query: 329  LAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAM 388
            L  L +GR +H+  VK     D  + T L+ MY+KCG+IE A  +F+  +  ++  W AM
Sbjct: 1223 LTALEQGRQIHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNAM 1282

Query: 389  IVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYG 448
            IVGL  HG A +AL  F +M   G+ P  +TFIGVL+ACSH+GLV++    F  M   YG
Sbjct: 1283 IVGLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIYG 1342

Query: 449  IEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAA 508
            IEP IEHY CLVD L R G + EA+  I SMP   +  ++ +LL+  R   +++ G+  A
Sbjct: 1343 IEPEIEHYSCLVDALSRAGRIREAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVA 1402

Query: 509  NNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEF 568
              L+ + P     YV+LSN+YAAA QW+ V+  R MM+K   +KDPG S ++ +  +H F
Sbjct: 1403 EKLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKANVKKDPGFSWVDLKNKVHLF 1462

Query: 569  VVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIA 628
            V GD+SH +TD I++K+  +  +++  G++PDT   L+ +E++ +KE  L  HSE+LAIA
Sbjct: 1463 VAGDRSHEETDVIYNKVEYIMKRIREEGYLPDTDFALVDVEEE-DKECSLYYHSEKLAIA 1521

Query: 629  FGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDF 688
            +GL+     + +R++KNLRVC DCH+  K +S ++ RE+++RD +RFHHF++G CSC D+
Sbjct: 1522 YGLMKTPPSTTLRVIKNLRVCGDCHNAIKYISKVFEREVVLRDANRFHHFRSGVCSCGDY 1581

Query: 689  W 689
            W
Sbjct: 1582 W 1582



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 136/582 (23%), Positives = 236/582 (40%), Gaps = 118/582 (20%)

Query: 141  GKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD--KDLVSWNCLIDGY 198
            GK+ H  +   G   D+F+ ++L++MY+K G +   R++FD   D  +DLV+WN ++  +
Sbjct: 645  GKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDTSRDLVTWNAILSAH 704

Query: 199  VKKGE----------------------VEVAMKLFDEMPDR---------------DLFS 221
              K                            M L    P                 D+F 
Sbjct: 705  ADKARDGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAESLHGYAVKIGLQWDVFV 764

Query: 222  WTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELF-------- 273
               LV+ ++K G++  AR +F  M  R++V WN M+  Y+  G    A  LF        
Sbjct: 765  AGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEALLLFSEFNRTGL 824

Query: 274  --DDMEI-------------------------------------RDLITWNSMIAGYELN 294
              DD+ +                                      D+I WN  ++ +   
Sbjct: 825  RPDDVTLCTLARVVKSKQNVLEWQLKQLKAYGTKLFMYDDDDDGSDVIAWNKTLSWFLQR 884

Query: 295  GRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLG 354
            G   EA++    M+   V  +  T V  LS VAGL  L  G+ +H  +V++G      +G
Sbjct: 885  GETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIHGIVVRSGLDQVVSVG 944

Query: 355  TLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMK 414
              LI MY K GS+  A TVF  +++  +  W  MI G  + G+   ++ +F  + R G+ 
Sbjct: 945  NCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECSVGMFVDLLRGGLL 1004

Query: 415  PTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP--TIEHY--GCLVDILCRTGYLE 470
            P   T   VL ACS  G    G  +    I+   ++    ++ +    L+D+  ++G +E
Sbjct: 1005 PDQFTVASVLRACSSLG----GGCHLATQIHACAMKAGVVLDSFVSTTLIDVYSKSGKME 1060

Query: 471  EAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIG---CYVVLSN 527
            EA+    +     +   W +++     HG    G++     + +     G     + L+N
Sbjct: 1061 EAEFLFVNQDGF-DLASWNAMM-----HGYIVSGDFPKALRLYILMQESGERANQITLAN 1114

Query: 528  IYAAAG---QWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSK 584
               AAG      +  +++ ++ KRGF  D    S    GVL  ++       +  E+ S 
Sbjct: 1115 AAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVIS----GVLDMYL-------KCGEMESA 1163

Query: 585  LSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLA 626
               + N++ +   V  TT +  C+E+ +E+ A    H  RL+
Sbjct: 1164 -RRIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLS 1204


>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
 gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
          Length = 818

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 255/719 (35%), Positives = 399/719 (55%), Gaps = 70/719 (9%)

Query: 26  NILKFSSTHKETQQLHALSVKTNLIYHSGISS------RLLSLYVDPHINNLHYARSIFD 79
           ++L   S+  + +++H      N +++SG+ S       L+++Y      ++  A+ +F 
Sbjct: 115 SVLGACSSLAQGREIH------NRVFYSGLDSFQSLANALVTMYA--RFGSVGDAKRMF- 165

Query: 80  RILQHPSLVLYNLLIKCYVFNQRSHEALTLF----CDLLDRFLLPDNFTLPCVIKGAARL 135
           + LQ      +N +I  +  +     AL +F    CD+      P++ T   VI G +  
Sbjct: 166 QSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCDMK-----PNSTTYINVISGFSTP 220

Query: 136 GAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLI 195
             + EG++IH  +   GF  D  V ++L++MY K G     R VFD M  +D+VSWN +I
Sbjct: 221 EVLPEGRKIHAEIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMI 280

Query: 196 DGYVKKGEVEVAMKLFDEMP---------------------------------------D 216
             YV+ G+   A++L+ ++                                        D
Sbjct: 281 GCYVQNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLD 340

Query: 217 RDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAG---DVDSACELF 273
            ++   T LV+ ++KCG +E AR++F  M NR+ V+W+ +I  Y   G   D   A ++F
Sbjct: 341 SEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVF 400

Query: 274 DDMEIRDLITWNSMIAGYELNGRFMEALELLETML-IGDVLPNDATLVSALSAVAGLAVL 332
           D +  RD I WN+MI  Y  NG  + A+++   M     + P+  T ++ L A A L  L
Sbjct: 401 DRLGSRDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRL 460

Query: 333 NKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGL 392
           ++ + +H+ I ++    + V+   LI MY++CGS+E A  +F A  +K V  WTAM+   
Sbjct: 461 SEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAF 520

Query: 393 GMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT 452
             +G   +ALDLF +M   G+KP  +T+  +L  C+H G +  G RYF  M   +G+ PT
Sbjct: 521 SQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHGLAPT 580

Query: 453 IEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLI 512
            +H+  +VD+L R+G L +AK  +ESMP  P+ V WM+ L+  R HG  ++GE AA  + 
Sbjct: 581 ADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVY 640

Query: 513 KVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGD 572
           ++ P +   Y+ +SNIYAA G W+KV+ VR+ M++RG +K PG S IE  G LHEF  G 
Sbjct: 641 ELDPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFSSGG 700

Query: 573 KSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLI 632
           K HP+TDEI  +L+ +   ++AAG+VPDT  VL  +  + EKE  L  HSE++AIAFGL+
Sbjct: 701 KYHPRTDEICEELTRLHGLMRAAGYVPDTKAVLHDV-SEGEKETMLLYHSEKMAIAFGLV 759

Query: 633 NVK-SRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHF-KNGSCSCKDFW 689
           + + S  PIR+VKNLRVC+DCH+ TK ++ I  R+II+RD +RFH F  +G CSC D+W
Sbjct: 760 SSRGSGEPIRVVKNLRVCSDCHTATKFIARIAGRDIILRDCNRFHRFSSDGKCSCGDYW 818



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 145/510 (28%), Positives = 254/510 (49%), Gaps = 52/510 (10%)

Query: 55  ISSRLLSLYVDPHINNLHYARSIFDRI-LQHPSLVLYNLLIKCYVFNQRSHEALTLFCDL 113
           + + L+S+Y     ++L  ARS+F+ +  +  ++V +N +I  Y  N  S EAL L+  +
Sbjct: 44  VGNALISMY--GKCDSLVDARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRM 101

Query: 114 LDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEI 173
             + L  D+ T   V+   + L    +G++IH  VF  G    + + ++LV+MYA+FG +
Sbjct: 102 NLQGLGTDHVTFVSVLGACSSLA---QGREIHNRVFYSGLDSFQSLANALVTMYARFGSV 158

Query: 174 DLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP---DRDLFSWTCLVDGFS 230
              +R+F ++  +D  SWN +I  + + G+   A+++F EM      +  ++  ++ GFS
Sbjct: 159 GDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCDMKPNSTTYINVISGFS 218

Query: 231 KCGKVEIAREIFYRMP----NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNS 286
               +   R+I   +     + +LV   A+IN Y K G    A E+FD M+ RD+++WN 
Sbjct: 219 TPEVLPEGRKIHAEIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNV 278

Query: 287 MIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNG 346
           MI  Y  NG F EALEL + + +       AT VS L A + +  L +GR +HS+I++ G
Sbjct: 279 MIGCYVQNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERG 338

Query: 347 FVVDGVLGTLLIQMYSKCGSIESALTVFRAISKK-------------------------- 380
              +  + T L+ MY+KCGS+E A  VF A+  +                          
Sbjct: 339 LDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARK 398

Query: 381 ---KVGH-----WTAMIVGLGMHGMATQALDLFNKMC-RMGMKPTAITFIGVLNACSHAG 431
              ++G      W AMI     +G A  A+ +F +M    G+KP A+TFI VL AC+  G
Sbjct: 399 VFDRLGSRDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLG 458

Query: 432 LVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSL 491
            +++  +  +  I++  +E  +     L+++  R G LEEA+    +   +   V W ++
Sbjct: 459 RLSE-VKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEK-TVVSWTAM 516

Query: 492 LSGARNHGN--KDIGEYAANNLIKVAPDTI 519
           ++    +G   + +  +   +L  V PD +
Sbjct: 517 VAAFSQYGRYAEALDLFQEMDLEGVKPDDV 546



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 129/442 (29%), Positives = 211/442 (47%), Gaps = 11/442 (2%)

Query: 120 PDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRV 179
           PDN T   V+   +  G + EG+ +H  +    F  D  V ++L+SMY K   +   R V
Sbjct: 5   PDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSV 64

Query: 180 FDAMD--DKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFS-WTCLVDGFSKCGKVE 236
           F++MD   +++VSWN +I  Y + G    A+ L+  M  + L +     V     C  + 
Sbjct: 65  FESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSLA 124

Query: 237 IAREIFYRMPNRNLVSW----NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYE 292
             REI  R+    L S+    NA++  Y + G V  A  +F  ++ RD  +WN++I  + 
Sbjct: 125 QGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHS 184

Query: 293 LNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV 352
            +G +  AL + + M   D+ PN  T ++ +S  +   VL +GR +H+ IV NGF  D V
Sbjct: 185 QSGDWSGALRIFKEMKC-DMKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDSDLV 243

Query: 353 LGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG 412
           + T LI MY KCGS   A  VF  + K+ +  W  MI     +G   +AL+L+ K+   G
Sbjct: 244 VATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEG 303

Query: 413 MKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEA 472
            K T  TF+ +L ACS    +  GR   + ++ + G++  +     LV++  + G LEEA
Sbjct: 304 FKRTKATFVSILGACSSVKALAQGRLVHSHIL-ERGLDSEVAVATALVNMYAKCGSLEEA 362

Query: 473 KSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAA 532
           +    +M  R + V W +L+    ++G       A     ++      C+  +   Y   
Sbjct: 363 RKVFNAMKNR-DAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTICWNAMITTYVQN 421

Query: 533 GQWDKVSEV-REMMKKRGFRKD 553
           G      ++ REM    G + D
Sbjct: 422 GCAVAAMKIFREMTGAAGLKPD 443



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 116/278 (41%), Gaps = 48/278 (17%)

Query: 311 DVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESA 370
           D  P++ T ++ L + +    + +GR +H  I  + F  D ++G  LI MY KC S+  A
Sbjct: 2   DRQPDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDA 61

Query: 371 LTVFRAIS--KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACS 428
            +VF ++   ++ V  W AMI     +G +T+AL L+ +M   G+    +TF+ VL ACS
Sbjct: 62  RSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACS 121

Query: 429 HAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP-------- 480
               +  GR   N +    G++        LV +  R G + +AK   +S+         
Sbjct: 122 S---LAQGREIHNRVFYS-GLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWN 177

Query: 481 -------------------------MRPNFVIWMSLLSGARN-----HGNKDIGEYAANN 510
                                    M+PN   +++++SG         G K   E  AN 
Sbjct: 178 AVILAHSQSGDWSGALRIFKEMKCDMKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANG 237

Query: 511 LIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548
                   +     L N+Y   G   +  EV + MKKR
Sbjct: 238 F----DSDLVVATALINMYGKCGSSHEAREVFDKMKKR 271


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 256/762 (33%), Positives = 394/762 (51%), Gaps = 113/762 (14%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPH--INNLHYARSIFDRI-LQHPSLVLYNLLI 94
           + +HA +VK  L+  + + + LLS Y +       L  AR +FD I L   ++  +N L+
Sbjct: 46  RAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFDEIPLARRNVFTWNSLL 105

Query: 95  KCYVFNQRSHEALTLFCDLLDR-------------------------------FLLPDNF 123
             +  + R  +A  +F ++ +R                                  P  F
Sbjct: 106 SMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQF 165

Query: 124 TLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAK-------------- 169
           TL  V+   A   A   G+++H  V KLG G    V +S+++MY K              
Sbjct: 166 TLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAETASTVFERM 225

Query: 170 -----------------FGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFD 212
                             G +DL   +F++M  + +VSWN +I GY + G    A+KLF 
Sbjct: 226 PVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLFS 285

Query: 213 EM-------PDRDLFSWT-----------------------------------CLVDGFS 230
            M       PD   F+ T                                    L+  ++
Sbjct: 286 RMLHESSMAPDE--FTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYA 343

Query: 231 KCGKVEIAREIFYRM--PNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMI 288
           K G VE AR I  +    + N++S+ A++ GY+K GD++SA E+F  M  RD++ W +MI
Sbjct: 344 KSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMI 403

Query: 289 AGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFV 348
            GYE NGR  EA++L  +M+     PN  TL + LS  A LA L+ G+ +H   +++   
Sbjct: 404 VGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLE 463

Query: 349 VDGVLGTLLIQMYSKCGSIESALTVFRAIS-KKKVGHWTAMIVGLGMHGMATQALDLFNK 407
               +   +I MY++ GS   A  +F  +  +K+   WT+MIV L  HG   +A+ LF +
Sbjct: 464 RSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEE 523

Query: 408 MCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTG 467
           M R G++P  IT++GVL+ACSHAG VN+G+RY++ + N++ I P + HY C+VD+L R G
Sbjct: 524 MLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAG 583

Query: 468 YLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSN 527
              EA+  I  MP+ P+ + W SLLS  R H N ++ E AA  L+ + P+  G Y  ++N
Sbjct: 584 LFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIAN 643

Query: 528 IYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSE 587
           +Y+A G+W   + + +  K++  RK+ G S    R  +H F   D  HPQ D +++  + 
Sbjct: 644 VYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAAR 703

Query: 588 MRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLR 647
           M  ++K AG VPD   VL  ++D+  KE  L  HSE+LAIAFGLI+   ++ +R++KNLR
Sbjct: 704 MWEEIKGAGFVPDLQSVLHDVDDEL-KEELLSRHSEKLAIAFGLISTPEKTTLRVMKNLR 762

Query: 648 VCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           VCNDCH+  K +S + +REIIVRD +RFHHF++G CSCKD+W
Sbjct: 763 VCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 804



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 125/509 (24%), Positives = 211/509 (41%), Gaps = 116/509 (22%)

Query: 130 KGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKF----GEIDLGRRVFD--AM 183
           + AA  GA   G+ IH    K G     ++ ++L+S Y +     G +   RR+FD   +
Sbjct: 37  QTAANPGA---GRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFDEIPL 93

Query: 184 DDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFY 243
             +++ +WN L+  + K G +  A  +F EMP+RD  SWT +V G ++ G+   A +   
Sbjct: 94  ARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLL 153

Query: 244 RM------PNR----NLVS-----------------------------WNAMINGYMKAG 264
            M      P +    N++S                              N+++N Y K G
Sbjct: 154 DMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCG 213

Query: 265 DVDSACELFDDMEI-------------------------------RDLITWNSMIAGYEL 293
           D ++A  +F+ M +                               R +++WN+MIAGY  
Sbjct: 214 DAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQ 273

Query: 294 NGRFMEALELLETML-IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV 352
           NG   +AL+L   ML    + P++ T+ S LSA A L  +  G+ +H+YI++     +  
Sbjct: 274 NGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQ 333

Query: 353 LGTLLIQMYSKCGSI---------------------------------ESALTVFRAISK 379
           +   LI  Y+K GS+                                 ESA  +F  ++ 
Sbjct: 334 VTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNN 393

Query: 380 KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRY 439
           + V  WTAMIVG   +G   +A+DLF  M   G +P + T   VL+ C+    ++ G++ 
Sbjct: 394 RDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQI 453

Query: 440 FNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
               I    +E +      ++ +  R+G    A+   + +  R   + W S++     HG
Sbjct: 454 HCRAIRSL-LERSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHG 512

Query: 500 NKD--IGEYAANNLIKVAPDTIGCYVVLS 526
             +  +G +       V PD I    VLS
Sbjct: 513 QGEEAVGLFEEMLRAGVEPDRITYVGVLS 541


>gi|27817913|dbj|BAC55678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|37806252|dbj|BAC99769.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 613

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 239/569 (42%), Positives = 334/569 (58%), Gaps = 8/569 (1%)

Query: 124 TLPCVIKGAAR-LGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDA 182
           T  C++ G AR LG + + + +    F      D    ++L+S +   G+ D  RR+F +
Sbjct: 50  TYNCLLAGYARALGRLADARHL----FDRIPTPDAVSYNTLLSCHFASGDADGARRLFAS 105

Query: 183 MDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIF 242
           M  +D+VSWN ++ G  K G VE A  +F  MP R+  SW  +V GF+    +  A E F
Sbjct: 106 MPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVSWNAMVSGFACSRDMSAAEEWF 165

Query: 243 YRMPNR-NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEAL 301
              P + + V W AM++GYM  G+V  A E F+ M +R+L++WN+++AGY  N    +AL
Sbjct: 166 RNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDAL 225

Query: 302 ELLETMLI-GDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQM 360
            L  TM+   +V PN +TL S L   + L+ L  G+ +H + +K     +  +GT L+ M
Sbjct: 226 RLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSM 285

Query: 361 YSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITF 420
           Y KCG + SA  +F  +  + V  W AMI G   HG   +A++LF +M   G++P  ITF
Sbjct: 286 YCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITF 345

Query: 421 IGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP 480
           + VL AC H GL + G R F  M   YGIEP ++HY C+VD+LCR G LE A   I SMP
Sbjct: 346 VAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMP 405

Query: 481 MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSE 540
             P+   + +LL+  R + N +  E AA  LI+  P + G YV L+NIYA A QWD VS 
Sbjct: 406 FEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAGANQWDDVSR 465

Query: 541 VREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPD 600
           VR  MK     K PG S IE +GV+HEF   D+ HPQ   IH KL ++  ++KA G+VPD
Sbjct: 466 VRRWMKDNAVVKTPGYSWIEIKGVMHEFRSNDRLHPQLYLIHEKLGQLAERMKAMGYVPD 525

Query: 601 TTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLS 660
              VL  + D+  K   L  HSE+LAI+FGLI+      +RI KNLRVC DCH+  K++S
Sbjct: 526 LDFVLHDV-DETLKVQMLMRHSEKLAISFGLISTAPGMTLRIFKNLRVCGDCHNAAKVIS 584

Query: 661 GIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            I +REII+RD +RFHHF+ G CSC D+W
Sbjct: 585 KIEDREIILRDTTRFHHFRGGHCSCGDYW 613



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 87/299 (29%), Positives = 136/299 (45%), Gaps = 50/299 (16%)

Query: 68  INNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPC 127
           +  L  AR +FDRI   P  V YN L+ C+  +  +  A  LF  +  R    D  +   
Sbjct: 62  LGRLADARHLFDRI-PTPDAVSYNTLLSCHFASGDADGARRLFASMPVR----DVVSWNT 116

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVF-DAMDDK 186
           ++ G ++ GA++E K     VF      +    +++VS +A   ++      F +A +  
Sbjct: 117 MVSGLSKSGAVEEAKA----VFLAMPVRNSVSWNAMVSGFACSRDMSAAEEWFRNAPEKG 172

Query: 187 DLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM- 245
           D V W  ++ GY+  G V  A++ F+ MP R+L SW  +V G+ K    + A  +F  M 
Sbjct: 173 DAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMV 232

Query: 246 ------PN---------------------------------RNLVSWNAMINGYMKAGDV 266
                 PN                                 RNL    ++++ Y K GD+
Sbjct: 233 REANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDL 292

Query: 267 DSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSA 325
            SAC+LF +M  RD++ WN+MI+GY  +G   EA+ L E M    V PN  T V+ L+A
Sbjct: 293 SSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTA 351



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 115/228 (50%), Gaps = 13/228 (5%)

Query: 59  LLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL-DRF 117
           ++S Y+D  I N+  A   F+ +    +LV +N ++  YV N  + +AL LF  ++ +  
Sbjct: 180 MVSGYMD--IGNVVKAIEYFEAMPVR-NLVSWNAVVAGYVKNSHADDALRLFRTMVREAN 236

Query: 118 LLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGR 177
           + P+  TL  V+ G + L A+  GKQIH    KL    +  V +SLVSMY K G++    
Sbjct: 237 VQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSAC 296

Query: 178 RVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL-FSWTCLVDGFSKC---G 233
           ++F  M  +D+V+WN +I GY + G+ + A+ LF+ M D  +  +W   V   + C   G
Sbjct: 297 KLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTG 356

Query: 234 KVEIAREIFYRMPNRNLVS-----WNAMINGYMKAGDVDSACELFDDM 276
             +     F  M     +      ++ M++   +AG ++ A +L   M
Sbjct: 357 LCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSM 404



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 66/304 (21%), Positives = 110/304 (36%), Gaps = 65/304 (21%)

Query: 257 INGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELN-GRFMEALELLETMLIGDVLPN 315
           +   ++ GD+  A E F     +   T+N ++AGY    GR  +A  L + +   D +  
Sbjct: 24  VAAAVRRGDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIPTPDAVSY 83

Query: 316 DA------------------------------TLVSALSAVA----------GLAVLNKG 335
           +                               T+VS LS              + V N  
Sbjct: 84  NTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSV 143

Query: 336 RWMHSYIVKNGFVV------------------DGVLGTLLIQMYSKCGSIESALTVFRAI 377
            W     + +GF                    D VL T ++  Y   G++  A+  F A+
Sbjct: 144 SW---NAMVSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAM 200

Query: 378 SKKKVGHWTAMIVGLGMHGMATQALDLFNKMCR-MGMKPTAITFIGVLNACSHAGLVNDG 436
             + +  W A++ G   +  A  AL LF  M R   ++P A T   VL  CS+   +  G
Sbjct: 201 PVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFG 260

Query: 437 RRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGAR 496
           ++     +    +   +     LV + C+ G L  A      M  R + V W +++SG  
Sbjct: 261 KQIHQWCMK-LPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTR-DVVAWNAMISGYA 318

Query: 497 NHGN 500
            HG+
Sbjct: 319 QHGD 322


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 253/702 (36%), Positives = 389/702 (55%), Gaps = 70/702 (9%)

Query: 55  ISSRLLSLYVDPHINNLHYARSIFDRILQH--PSLVLYNLLIKCYVFNQRSHEALTLFCD 112
           I + L+++Y      +L  A  IFD I Q     ++ +N ++  +V +  +  AL LF  
Sbjct: 192 ICNALVAMY--SRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSK 249

Query: 113 L-LDRFLLPDN-----FTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSM 166
           + L     P N      ++  ++     L A+ + K++HG   + G   D FV ++L+  
Sbjct: 250 MTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDA 309

Query: 167 YAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR----DLFSW 222
           YAK G ++   +VF+ M+ KD+VSWN ++ GY + G  E A +LF  M       D+ +W
Sbjct: 310 YAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTW 369

Query: 223 TCLVDGFSKCGKVEIAREIFYRM------PN----------------------------- 247
           T ++ G+S+ G    A  +F +M      PN                             
Sbjct: 370 TAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLK 429

Query: 248 --------------RNLVSWNAMINGYMKAGDVDSACELFDD--MEIRDLITWNSMIAGY 291
                          +L+ +NA+I+ Y K     +A  +FDD  +E R+++TW  MI G+
Sbjct: 430 NCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGH 489

Query: 292 ELNGRFMEALELLETMLIGD--VLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVV 349
              G   +AL+L   M+     V PN  T+   L A A LA +  G+ +H+Y++++    
Sbjct: 490 AQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYE 549

Query: 350 DGV--LGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNK 407
                +   LI MYSKCG +++A  VF ++S+K    WT+M+ G GMHG  ++ALD+F+K
Sbjct: 550 SSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDK 609

Query: 408 MCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTG 467
           M + G  P  ITF+ VL ACSH G+V+ G  YF+ M  DYG+ P  EHY C +D+L R+G
Sbjct: 610 MRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSG 669

Query: 468 YLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSN 527
            L++A  T++ MPM P  V+W++LLS  R H N ++ E+A N L+++  +  G Y ++SN
Sbjct: 670 RLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISN 729

Query: 528 IYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSE 587
           IYA AG+W  V+ +R +MKK G +K PG S ++ +     F VGD+SHP + +I++ L  
Sbjct: 730 IYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLES 789

Query: 588 MRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLR 647
           + +++KA G+VP+T   L  + D++EK   L  HSE+LA+A+GL+      PIRI KNLR
Sbjct: 790 LIDRIKAMGYVPETNFALHDV-DEEEKNNLLVEHSEKLALAYGLLTTSPGCPIRITKNLR 848

Query: 648 VCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           VC DCHS    +S I + EI+VRD SRFHHFKNGSCSC  +W
Sbjct: 849 VCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 890



 Score =  228 bits (580), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 153/522 (29%), Positives = 254/522 (48%), Gaps = 71/522 (13%)

Query: 73  YARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGA 132
           YA  + +R+   P+ V +NLLI+ ++   R   A+ + C +L     PD+FTLP V+K  
Sbjct: 107 YALLVLERVTPSPA-VWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLKAC 165

Query: 133 ARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK---DLV 189
             L + + G   HGL+   GF  + F+ ++LV+MY++ G ++    +FD +  +   D++
Sbjct: 166 GELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVI 225

Query: 190 SWNCLIDGYVKKGEVEVAMKLFDEM-------------------------------PDR- 217
           SWN ++  +VK      A+ LF +M                               P   
Sbjct: 226 SWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTK 285

Query: 218 -------------DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAG 264
                        D+F    L+D ++KCG +E A ++F  M  +++VSWNAM+ GY ++G
Sbjct: 286 EVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSG 345

Query: 265 DVDSACELFDDMEIR----DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLV 320
           + ++A ELF +M       D++TW ++IAGY   G   EAL L   M+    LPN  T++
Sbjct: 346 NFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTII 405

Query: 321 SALSAVAGLAVLNKGRWMHSYIVKNGFVV----------DGVLGTLLIQMYSKCGSIESA 370
           S LSA A L   ++G  +H+Y +KN  +           D ++   LI MYSKC S ++A
Sbjct: 406 SVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAA 465

Query: 371 LTVFRAI--SKKKVGHWTAMIVGLGMHGMATQALDLFNKMCR--MGMKPTAITFIGVLNA 426
            ++F  I   ++ V  WT MI G   +G +  AL LF +M     G+ P A T   +L A
Sbjct: 466 RSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMA 525

Query: 427 CSHAGLVNDGRRYFNMMINDYGIEPTIEHYG-CLVDILCRTGYLEEAKSTIESMPMRPNF 485
           C+H   +  G++    ++  +  E +      CL+D+  + G ++ A+   +SM  + + 
Sbjct: 526 CAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQK-SA 584

Query: 486 VIWMSLLSGARNHGNKDIGEYAANNLIKVA--PDTIGCYVVL 525
           + W S+++G   HG         + + K    PD I   VVL
Sbjct: 585 ISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVL 626



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 101/409 (24%), Positives = 178/409 (43%), Gaps = 72/409 (17%)

Query: 161 SSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------ 214
           + +V+ Y   G  D    V + +     V WN LI  ++K+G ++ A+ +   M      
Sbjct: 93  TGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTR 152

Query: 215 PDRDLFSWTCLVDGFSKCGKVEIAR--EIFYRMP-----NRNLVSWNAMINGYMKAGDVD 267
           PD   F+   L      CG++   R    F+ +        N+   NA++  Y + G ++
Sbjct: 153 PDH--FT---LPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLE 207

Query: 268 SACELFDDMEIR---DLITWNSMIAGYELNGRFMEALELLETM-LIGDVLPNDA-----T 318
            A  +FD++  R   D+I+WNS+++ +  +     AL+L   M LI    P +      +
Sbjct: 208 EASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIIS 267

Query: 319 LVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS 378
           +V+ L A   L  + + + +H   ++NG   D  +G  LI  Y+KCG +E+A+ VF  + 
Sbjct: 268 IVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMME 327

Query: 379 KKKV--------GH---------------------------WTAMIVGLGMHGMATQALD 403
            K V        G+                           WTA+I G    G + +AL+
Sbjct: 328 FKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALN 387

Query: 404 LFNKMCRMGMKPTAITFIGVLNACSHAGLVNDG--------RRYFNMMINDYGIE-PTIE 454
           LF +M   G  P  +T I VL+AC+  G  + G        +     + ND+G E   + 
Sbjct: 388 LFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLM 447

Query: 455 HYGCLVDILCRTGYLEEAKSTIESMPMRP-NFVIWMSLLSGARNHGNKD 502
            Y  L+D+  +    + A+S  + +P+   N V W  ++ G   +G+ +
Sbjct: 448 VYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSN 496



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 63/150 (42%), Gaps = 3/150 (2%)

Query: 347 FVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFN 406
           F+    LGT ++  Y  CG+ + AL V   ++      W  +I      G    A+++  
Sbjct: 85  FISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSC 144

Query: 407 KMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRT 466
           +M R G +P   T   VL AC        G  +  ++  + G E  +     LV +  R 
Sbjct: 145 RMLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCN-GFESNVFICNALVAMYSRC 203

Query: 467 GYLEEAKSTIESMPMR--PNFVIWMSLLSG 494
           G LEEA    + +  R   + + W S++S 
Sbjct: 204 GSLEEASMIFDEITQRGIDDVISWNSIVSA 233


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 250/697 (35%), Positives = 391/697 (56%), Gaps = 52/697 (7%)

Query: 33  THKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNL 92
           +  + QQLHA  +K      S + +  L L +  HIN LH +  +F+ I   P+L  +  
Sbjct: 21  SRSQAQQLHAQVLK---FQASSLCNLSLLLSIYSHINLLHDSLRLFNTIHFPPALA-WKS 76

Query: 93  LIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLG 152
           +I+CY  +   H++L  F  +L   L PD+   P V+K  A L  +  G+ +HG + ++G
Sbjct: 77  VIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESLHGYIIRVG 136

Query: 153 FGFDKFVLSSLVSMYAKF-------------GEI-------------------DLGRRVF 180
             FD +  ++L++MY+K              GE+                   D  R++F
Sbjct: 137 LDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLSEDSVRKIF 196

Query: 181 DAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVE 236
           + M +KDLVSWN +I G  + G  E  +++  EM   +L    F+ + ++   ++   + 
Sbjct: 197 EMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVDIS 256

Query: 237 IAREI----FYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYE 292
             +EI      +  + ++   +++I+ Y K   V  +C +F  +  RD I+WNS+IAG  
Sbjct: 257 RGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCV 316

Query: 293 LNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV 352
            NG F E L     ML+  + P   +  S + A A L  L+ G+ +H YI +NGF  +  
Sbjct: 317 QNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIF 376

Query: 353 LGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG 412
           + + L+ MY+KCG+I +A  +F  +  + +  WTAMI+G  +HG A  A++LF +M   G
Sbjct: 377 IASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEG 436

Query: 413 MKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEA 472
           +K        VL ACSH GLV++  +YFN M  D+GI P +EHY  + D+L R G LEEA
Sbjct: 437 IK-------AVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEA 489

Query: 473 KSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAA 532
              I  M + P   IW +LLS  R H N D+ E  AN +++V P+  G Y++L+NIY+AA
Sbjct: 490 YDFICGMHIGPTGSIWATLLSACRVHKNIDMAEKVANRILEVDPNNTGAYILLANIYSAA 549

Query: 533 GQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKL 592
            +W + ++ R  M++ G RK P  S IE +  ++ F+ GD+SHP  ++I   +  +   +
Sbjct: 550 RRWKEAAKWRASMRRIGIRKTPACSWIEVKNKVYAFMAGDESHPCYEKIREAMEVLVELM 609

Query: 593 KAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDC 652
           +  G+VPDT++V   +E++++K   + +HSERLAI FG+IN  +   IR+ KNLRVC DC
Sbjct: 610 EKEGYVPDTSEVHHDVEEEQKKYL-VCSHSERLAIVFGIINTPAGMTIRVTKNLRVCTDC 668

Query: 653 HSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           H+ TK +S I  REI+VRDNSRFHHFKNG+CSC D+W
Sbjct: 669 HTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDYW 705


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 234/602 (38%), Positives = 362/602 (60%), Gaps = 11/602 (1%)

Query: 90  YNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVF 149
           +N +I  +  N  +  AL +   +    +  D  T+  ++   A+   +  G  IH  V 
Sbjct: 190 WNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVL 249

Query: 150 KLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMK 209
           K G   D FV ++L++MY+KFG +   + VFD M+ +DLVSWN +I  Y +  +   A++
Sbjct: 250 KHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALR 309

Query: 210 LFDEMP----DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR-----NLVSWNAMINGY 260
            F  M       DL +   L   FS+     I+R I   +  R     ++V  NA++N Y
Sbjct: 310 FFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMY 369

Query: 261 MKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETML-IGDVLPNDATL 319
            K G ++ A  +FD +  +D I+WN+++ GY  NG   EA++    M    D +PN  T 
Sbjct: 370 AKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTW 429

Query: 320 VSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK 379
           VS + A + +  L +G  +H+ ++KN   +D  + T LI +Y KCG +E A+++F  I +
Sbjct: 430 VSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPR 489

Query: 380 KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRY 439
                W A+I  LG+HG   +AL LF  M    +K   ITF+ +L+ACSH+GLV++G++ 
Sbjct: 490 DTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKC 549

Query: 440 FNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
           F++M  +YGI+P+++HYGC+VD+L R GYLE+A   + +MP++P+  IW +LLS  + +G
Sbjct: 550 FDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYG 609

Query: 500 NKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSI 559
           N ++G  A++ L++V  + +G YV+LSNIYA   +W+ V +VR + + RG RK PG SS+
Sbjct: 610 NAELGTLASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSV 669

Query: 560 EHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELE 619
                   F  G+++HP+  EI+ +L  +  K+K+ G+VPD + V   IE+  EKE  L 
Sbjct: 670 VVGSKAEVFYTGNQTHPKYTEIYKELKVLSAKMKSLGYVPDYSFVYQDIEED-EKEQILN 728

Query: 620 NHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFK 679
           +HSERLAIAFG+I+   RSPIRI KNLRVC DCH+ TK +S I  REI+VRD++RFHHFK
Sbjct: 729 SHSERLAIAFGIISTPPRSPIRIFKNLRVCGDCHNATKYISRISEREIVVRDSNRFHHFK 788

Query: 680 NG 681
           +G
Sbjct: 789 DG 790



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 144/478 (30%), Positives = 245/478 (51%), Gaps = 24/478 (5%)

Query: 37  TQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKC 96
           T++LHAL +      +  +S++L++LYV     ++  +RS FD I    ++  +N +I  
Sbjct: 38  TKKLHALLLVFGKSQNIVLSTKLINLYVTH--GDISLSRSTFDYI-HKKNIFSWNSIISA 94

Query: 97  YVFNQRSHEALTLFCDLLDR----FLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLG 152
           YV   + HEA+     L        L PD +T P ++K    L    +GK++H  VFK+G
Sbjct: 95  YVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSL---VDGKKVHCCVFKMG 151

Query: 153 FGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFD 212
           F  D FV +SLV +Y+++G +D+  +VF  M  KD+ SWN +I G+ + G    A+ + +
Sbjct: 152 FEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLN 211

Query: 213 EMPDRDLFSWTCLVDG-FSKCGK-------VEIAREIFYRMPNRNLVSWNAMINGYMKAG 264
            M    +   T  V      C +       V I   +     + ++   NA+IN Y K G
Sbjct: 212 RMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFG 271

Query: 265 DVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS 324
            +  A  +FD ME+RDL++WNS+IA YE N     AL   + M +G + P+  T+VS  S
Sbjct: 272 RLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTS 331

Query: 325 AVAGLAVLNKGRWMHSYIVKNGFV-VDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVG 383
             + L+     R +  ++++  ++  D V+G  L+ MY+K G +  A TVF  + +K   
Sbjct: 332 IFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTI 391

Query: 384 HWTAMIVGLGMHGMATQALDLFNKM--CRMGMKPTAITFIGVLNACSHAGLVNDGRRYFN 441
            W  ++ G   +G+A++A+D +N M  CR  + P   T++ ++ A SH G +  G +   
Sbjct: 392 SWNTLVTGYTQNGLASEAIDAYNMMEECRDTI-PNQGTWVSIIPAYSHVGALQQGMKIHA 450

Query: 442 MMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
            +I +  +   +    CL+D+  + G LE+A S    +P R   V W ++++    HG
Sbjct: 451 KLIKN-SLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIP-RDTSVPWNAIIASLGIHG 506



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 106/436 (24%), Positives = 199/436 (45%), Gaps = 30/436 (6%)

Query: 138 IKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDG 197
           +   K++H L+   G   +  + + L+++Y   G+I L R  FD +  K++ SWN +I  
Sbjct: 35  VNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISA 94

Query: 198 YVKKGEVEVAMKLFDEM----------PDRDLF-----SWTCLVDGFSKCGKVEIAREIF 242
           YV+ G+   AM   +++          PD   F     +   LVDG     KV     +F
Sbjct: 95  YVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVDG----KKVHCC--VF 148

Query: 243 YRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALE 302
                 ++    ++++ Y + G +D A ++F DM ++D+ +WN+MI+G+  NG    AL 
Sbjct: 149 KMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALG 208

Query: 303 LLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYS 362
           +L  M    V  +  T+ S L   A    +  G  +H +++K+G   D  +   LI MYS
Sbjct: 209 VLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYS 268

Query: 363 KCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIG 422
           K G ++ A  VF  +  + +  W ++I     +   + AL  F  M   G++P  +T + 
Sbjct: 269 KFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVS 328

Query: 423 VLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMR 482
           + +  S        R     +I    ++  +     LV++  + GY+  A +  + +P R
Sbjct: 329 LTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLP-R 387

Query: 483 PNFVIWMSLLSGARNHG--NKDIGEYAANNLIKVAPDTI---GCYVVLSNIYAAAGQWDK 537
            + + W +L++G   +G  ++ I  Y   N+++   DTI   G +V +   Y+  G   +
Sbjct: 388 KDTISWNTLVTGYTQNGLASEAIDAY---NMMEECRDTIPNQGTWVSIIPAYSHVGALQQ 444

Query: 538 VSEVREMMKKRGFRKD 553
             ++   + K     D
Sbjct: 445 GMKIHAKLIKNSLYLD 460


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 253/702 (36%), Positives = 389/702 (55%), Gaps = 70/702 (9%)

Query: 55  ISSRLLSLYVDPHINNLHYARSIFDRILQH--PSLVLYNLLIKCYVFNQRSHEALTLFCD 112
           I + L+++Y      +L  A  IFD I Q     ++ +N ++  +V +  +  AL LF  
Sbjct: 199 ICNALVAMY--SRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSK 256

Query: 113 L-LDRFLLPDN-----FTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSM 166
           + L     P N      ++  ++     L A+ + K++HG   + G   D FV ++L+  
Sbjct: 257 MTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDA 316

Query: 167 YAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR----DLFSW 222
           YAK G ++   +VF+ M+ KD+VSWN ++ GY + G  E A +LF  M       D+ +W
Sbjct: 317 YAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTW 376

Query: 223 TCLVDGFSKCGKVEIAREIFYRM------PN----------------------------- 247
           T ++ G+S+ G    A  +F +M      PN                             
Sbjct: 377 TAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLK 436

Query: 248 --------------RNLVSWNAMINGYMKAGDVDSACELFDD--MEIRDLITWNSMIAGY 291
                          +L+ +NA+I+ Y K     +A  +FDD  +E R+++TW  MI G+
Sbjct: 437 NCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGH 496

Query: 292 ELNGRFMEALELLETMLIGD--VLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVV 349
              G   +AL+L   M+     V PN  T+   L A A LA +  G+ +H+Y++++    
Sbjct: 497 AQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYE 556

Query: 350 DGV--LGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNK 407
                +   LI MYSKCG +++A  VF ++S+K    WT+M+ G GMHG  ++ALD+F+K
Sbjct: 557 SSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDK 616

Query: 408 MCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTG 467
           M + G  P  ITF+ VL ACSH G+V+ G  YF+ M  DYG+ P  EHY C +D+L R+G
Sbjct: 617 MRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSG 676

Query: 468 YLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSN 527
            L++A  T++ MPM P  V+W++LLS  R H N ++ E+A N L+++  +  G Y ++SN
Sbjct: 677 RLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISN 736

Query: 528 IYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSE 587
           IYA AG+W  V+ +R +MKK G +K PG S ++ +     F VGD+SHP + +I++ L  
Sbjct: 737 IYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLES 796

Query: 588 MRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLR 647
           + +++KA G+VP+T   L  + D++EK   L  HSE+LA+A+GL+      PIRI KNLR
Sbjct: 797 LIDRIKAMGYVPETNFALHDV-DEEEKNNLLVEHSEKLALAYGLLTTSPGCPIRITKNLR 855

Query: 648 VCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           VC DCHS    +S I + EI+VRD SRFHHFKNGSCSC  +W
Sbjct: 856 VCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 897



 Score =  228 bits (580), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 153/522 (29%), Positives = 254/522 (48%), Gaps = 71/522 (13%)

Query: 73  YARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGA 132
           YA  + +R+   P+ V +NLLI+ ++   R   A+ + C +L     PD+FTLP V+K  
Sbjct: 114 YALLVLERVTPSPA-VWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLKAC 172

Query: 133 ARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK---DLV 189
             L + + G   HGL+   GF  + F+ ++LV+MY++ G ++    +FD +  +   D++
Sbjct: 173 GELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVI 232

Query: 190 SWNCLIDGYVKKGEVEVAMKLFDEM-------------------------------PDR- 217
           SWN ++  +VK      A+ LF +M                               P   
Sbjct: 233 SWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTK 292

Query: 218 -------------DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAG 264
                        D+F    L+D ++KCG +E A ++F  M  +++VSWNAM+ GY ++G
Sbjct: 293 EVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSG 352

Query: 265 DVDSACELFDDMEIR----DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLV 320
           + ++A ELF +M       D++TW ++IAGY   G   EAL L   M+    LPN  T++
Sbjct: 353 NFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTII 412

Query: 321 SALSAVAGLAVLNKGRWMHSYIVKNGFVV----------DGVLGTLLIQMYSKCGSIESA 370
           S LSA A L   ++G  +H+Y +KN  +           D ++   LI MYSKC S ++A
Sbjct: 413 SVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAA 472

Query: 371 LTVFRAI--SKKKVGHWTAMIVGLGMHGMATQALDLFNKMCR--MGMKPTAITFIGVLNA 426
            ++F  I   ++ V  WT MI G   +G +  AL LF +M     G+ P A T   +L A
Sbjct: 473 RSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMA 532

Query: 427 CSHAGLVNDGRRYFNMMINDYGIEPTIEHYG-CLVDILCRTGYLEEAKSTIESMPMRPNF 485
           C+H   +  G++    ++  +  E +      CL+D+  + G ++ A+   +SM  + + 
Sbjct: 533 CAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQK-SA 591

Query: 486 VIWMSLLSGARNHGNKDIGEYAANNLIKVA--PDTIGCYVVL 525
           + W S+++G   HG         + + K    PD I   VVL
Sbjct: 592 ISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVL 633



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 101/409 (24%), Positives = 178/409 (43%), Gaps = 72/409 (17%)

Query: 161 SSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------ 214
           + +V+ Y   G  D    V + +     V WN LI  ++K+G ++ A+ +   M      
Sbjct: 100 TGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTR 159

Query: 215 PDRDLFSWTCLVDGFSKCGKVEIAR--EIFYRMP-----NRNLVSWNAMINGYMKAGDVD 267
           PD   F+   L      CG++   R    F+ +        N+   NA++  Y + G ++
Sbjct: 160 PDH--FT---LPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLE 214

Query: 268 SACELFDDMEIR---DLITWNSMIAGYELNGRFMEALELLETM-LIGDVLPNDA-----T 318
            A  +FD++  R   D+I+WNS+++ +  +     AL+L   M LI    P +      +
Sbjct: 215 EASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIIS 274

Query: 319 LVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS 378
           +V+ L A   L  + + + +H   ++NG   D  +G  LI  Y+KCG +E+A+ VF  + 
Sbjct: 275 IVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMME 334

Query: 379 KKKV--------GH---------------------------WTAMIVGLGMHGMATQALD 403
            K V        G+                           WTA+I G    G + +AL+
Sbjct: 335 FKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALN 394

Query: 404 LFNKMCRMGMKPTAITFIGVLNACSHAGLVNDG--------RRYFNMMINDYGIE-PTIE 454
           LF +M   G  P  +T I VL+AC+  G  + G        +     + ND+G E   + 
Sbjct: 395 LFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLM 454

Query: 455 HYGCLVDILCRTGYLEEAKSTIESMPMRP-NFVIWMSLLSGARNHGNKD 502
            Y  L+D+  +    + A+S  + +P+   N V W  ++ G   +G+ +
Sbjct: 455 VYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSN 503



 Score = 52.4 bits (124), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 63/150 (42%), Gaps = 3/150 (2%)

Query: 347 FVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFN 406
           F+    LGT ++  Y  CG+ + AL V   ++      W  +I      G    A+++  
Sbjct: 92  FISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSC 151

Query: 407 KMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRT 466
           +M R G +P   T   VL AC        G  +  ++  + G E  +     LV +  R 
Sbjct: 152 RMLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCN-GFESNVFICNALVAMYSRC 210

Query: 467 GYLEEAKSTIESMPMR--PNFVIWMSLLSG 494
           G LEEA    + +  R   + + W S++S 
Sbjct: 211 GSLEEASMIFDEITQRGIDDVISWNSIVSA 240


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 238/669 (35%), Positives = 387/669 (57%), Gaps = 21/669 (3%)

Query: 35  KETQQLHALSVKTNLI-YHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLL 93
           K+ Q LHA+ ++T L+ +   + + L+++Y      +L  AR  FD  +   +LV +N L
Sbjct: 75  KQGQLLHAMILETRLLEFDIILGTALITMYA--RCRDLELARKTFDE-MGKKTLVTWNAL 131

Query: 94  IKCYVFNQRSHEALTLFCDLLDRF---LLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFK 150
           I  Y  N     AL ++ D++ +    + PD  T    +     +G I +G++I      
Sbjct: 132 IAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQGREIEARTVA 191

Query: 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
            G+  D  V ++L++MY+K G ++  R+VFD + ++D+++WN +I GY K+G    A++L
Sbjct: 192 SGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALEL 251

Query: 211 FDEM----PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPN----RNLVSWNAMINGYMK 262
           F  M    P  ++ ++  L+   +    +E  R I  ++       +LV  N ++N Y K
Sbjct: 252 FQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLVIGNVLLNMYTK 311

Query: 263 -AGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVS 321
            +  ++ A ++F+ M  RD+ITWN +I  Y   G+  +AL++ + M + +V PN+ TL +
Sbjct: 312 CSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSN 371

Query: 322 ALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKK 381
            LSA A L    +G+ +H+ I       D VL   L+ MY++CGS++  + VF AI  K 
Sbjct: 372 VLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKS 431

Query: 382 VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFN 441
           +  W+ +I     HG +   L+ F ++ + G+    +T +  L+ACSH G++ +G + F 
Sbjct: 432 LVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQTFL 491

Query: 442 MMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNK 501
            M+ D+G+ P   H+ C+VD+L R G LE A++ I  MP  P+ V W SLLSG + H + 
Sbjct: 492 SMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDT 551

Query: 502 DIGEYAANNLIKV-APDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIE 560
                 A+ L ++ + D      +LSN+YA AG+WD   +VR+   +R  RK+PG S IE
Sbjct: 552 KRAARVADKLFELESEDEHSTVTLLSNVYAEAGRWD---DVRKTRNRRAARKNPGCSYIE 608

Query: 561 HRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELEN 620
               +HEFV GDKSHP+ + I +++  +  ++K AG+VPD   VL  ++++ EKE  L  
Sbjct: 609 INDTVHEFVAGDKSHPEEELIAAEIKRLSKQMKDAGYVPDMRMVLHNVKEE-EKEQMLCY 667

Query: 621 HSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKN 680
           HSE+LAIA+GLI+    +P+ IVKNLR C DCH+  K +S I  R+I+VRD++RFHHF+N
Sbjct: 668 HSEKLAIAYGLISTPPGTPLHIVKNLRACVDCHAAAKFISRIVGRKIVVRDSTRFHHFEN 727

Query: 681 GSCSCKDFW 689
           GSCSCKD+W
Sbjct: 728 GSCSCKDYW 736



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 132/437 (30%), Positives = 225/437 (51%), Gaps = 17/437 (3%)

Query: 82  LQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEG 141
           ++HP+ V + L++  +  N    EAL  +  ++   L PD       I   +    +K+G
Sbjct: 18  IEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMFVVAIGVCSSSKDLKQG 77

Query: 142 KQIHGLVFKLG-FGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVK 200
           + +H ++ +     FD  + ++L++MYA+  +++L R+ FD M  K LV+WN LI GY +
Sbjct: 78  QLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWNALIAGYSR 137

Query: 201 KGEVEVAMKLFDEM---------PDRDLFS---WTCLVDGFSKCGKVEIAREIFYRMPNR 248
            G+   A+K++ +M         PD   FS   + C V G    G+   AR +     + 
Sbjct: 138 NGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQGREIEARTVASGYASD 197

Query: 249 NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETML 308
           ++V  NA+IN Y K G ++SA ++FD ++ RD+I WN+MI+GY   G   +ALEL + M 
Sbjct: 198 SIVQ-NALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMG 256

Query: 309 IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKC-GSI 367
             D  PN  T +  L+A   L  L +GR +H  + ++G+  D V+G +L+ MY+KC  S+
Sbjct: 257 PNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLVIGNVLLNMYTKCSSSL 316

Query: 368 ESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNAC 427
           E A  VF  +  + V  W  +IV    +G A  ALD+F +M    + P  IT   VL+AC
Sbjct: 317 EEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSAC 376

Query: 428 SHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVI 487
           +  G    G +  + +I     +  +     L+++  R G L++      ++  + + V 
Sbjct: 377 AVLGAKRQG-KAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDK-SLVS 434

Query: 488 WMSLLSGARNHGNKDIG 504
           W +L++    HG+   G
Sbjct: 435 WSTLIAAYAQHGHSRTG 451



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 117/381 (30%), Positives = 188/381 (49%), Gaps = 21/381 (5%)

Query: 166 MYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDRDL 219
           MY K G +     VF A++  + VSW  ++  + + G    A+  +  M      PD  +
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 220 FS---WTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDM 276
           F      C      K G++  A  +  R+   +++   A+I  Y +  D++ A + FD+M
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 277 EIRDLITWNSMIAGYELNGRFMEALELLETMLIGD---VLPNDATLVSALSAVAGLAVLN 333
             + L+TWN++IAGY  NG    AL++ + M+      + P+  T  SAL A   +  ++
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDIS 180

Query: 334 KGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLG 393
           +GR + +  V +G+  D ++   LI MYSKCGS+ESA  VF  +  + V  W  MI G  
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYA 240

Query: 394 MHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTI 453
             G ATQAL+LF +M     KP  +TFIG+L AC++   +  GR     +  D G E  +
Sbjct: 241 KQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVRED-GYESDL 299

Query: 454 EHYGCLVDILCR-TGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGN-KD-IGEYAANN 510
                L+++  + +  LEEA+   E M  R + + W  L+     +G  KD +  +    
Sbjct: 300 VIGNVLLNMYTKCSSSLEEARQVFERMRTR-DVITWNILIVAYVQYGQAKDALDIFKQMQ 358

Query: 511 LIKVAPDTIGCYVVLSNIYAA 531
           L  VAP+ I     LSN+ +A
Sbjct: 359 LENVAPNEI----TLSNVLSA 375


>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
 gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
          Length = 703

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 241/682 (35%), Positives = 379/682 (55%), Gaps = 65/682 (9%)

Query: 67  HINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLP 126
            +  +  AR+IFD  LQ  ++  +N ++  Y  N+R  EA  LF  + +R    +  +  
Sbjct: 28  RLGQIDRARNIFDD-LQSKTVTSWNAIVAGYFHNKRPAEAQKLFDKMPER----NTISWN 82

Query: 127 CVIKGAARLGAIKEGKQI---------------------HGLVFKLGFGFDKFVLSSLVS 165
            ++ G  + G I E +++                      GL+ +    F +    ++VS
Sbjct: 83  GLVSGYVKNGMISEARKVFDKMPERNVVSWTSMVRGYVQEGLIDEAELLFWRMPEKNVVS 142

Query: 166 MYAKFG------EIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL 219
                G       +D  RR+FD +  KD+V+   +I G   +G +  A ++FDEMP R++
Sbjct: 143 WTVMLGGLIEDGRVDEARRLFDMIPVKDVVASTNMIGGLCSEGRLSEAREIFDEMPQRNV 202

Query: 220 FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELF------ 273
            +WT ++ G++   KV++AR++F  MP++N V+W AM+ GY ++G ++ A ELF      
Sbjct: 203 VAWTSMISGYAMNNKVDVARKLFEVMPDKNEVTWTAMLKGYTRSGRINEAAELFKAMPVK 262

Query: 274 -------------------------DDMEIRDLITWNSMIAGYELNGRFMEALELLETML 308
                                    D M+ +D  TW+++I  YE  G  +EAL L   M 
Sbjct: 263 PVAACNGMIMGFGLNGEVGKARWVFDQMKEKDDGTWSALIKIYERKGFELEALALFSLMQ 322

Query: 309 IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIE 368
              V PN  +++S LS    LA L+ GR +HS +V++ F +D  + ++LI MY KCG + 
Sbjct: 323 REGVRPNFPSIISILSVCGSLASLDHGRQVHSQLVRSHFDLDIYVSSVLITMYIKCGDLV 382

Query: 369 SALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACS 428
           +   VF   S K +  W ++I G   HG   +AL++F++M   G  P  ITFIGVL+AC 
Sbjct: 383 TGKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHEMFSSGAAPDEITFIGVLSACG 442

Query: 429 HAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIW 488
           + G V +G   F  M + Y ++   EHY C+VD+L R G L EA + IE+MP+  + ++W
Sbjct: 443 YTGKVKEGLEIFESMKSKYQVDQKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVW 502

Query: 489 MSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548
            +LLS  R H N D+ E AA  L+++ P + G Y++LSN+YA+  +W  V+E+R+ M+ R
Sbjct: 503 GALLSACRTHKNLDLAEIAAKKLLQLEPSSAGPYILLSNLYASQSRWKDVAELRKTMRAR 562

Query: 549 GFRKDPGSSSIEHRGVLHEFV-VGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLC 607
              K PG S IE    +H F   G  SHP+ + I  KL ++   L+ AG+ PD + V+  
Sbjct: 563 NVSKSPGCSWIEVDNKVHMFTGGGSASHPEHEMIMKKLEKLGASLREAGYCPDGSFVMHD 622

Query: 608 IEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREI 667
           + D+++K   L +HSE++A+A+GL+ V    PIR++KNLRVC DCHS  KL++ +  REI
Sbjct: 623 V-DEEDKVHSLRHHSEKMAVAYGLLKVPVGKPIRVMKNLRVCGDCHSAIKLIAQVTGREI 681

Query: 668 IVRDNSRFHHFKNGSCSCKDFW 689
           I+RD +RFHHFK+G CSC+DFW
Sbjct: 682 ILRDANRFHHFKDGLCSCRDFW 703



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 121/447 (27%), Positives = 204/447 (45%), Gaps = 78/447 (17%)

Query: 164 VSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWT 223
           +S +A+ G+ID  R +FD +  K + SWN ++ GY        A KLFD+MP+R+  SW 
Sbjct: 23  ISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKLFDKMPERNTISWN 82

Query: 224 CLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLIT 283
            LV G+ K G +  AR++F +MP RN+VSW +M+ GY++ G +D A  LF  M  +++++
Sbjct: 83  GLVSGYVKNGMISEARKVFDKMPERNVVSWTSMVRGYVQEGLIDEAELLFWRMPEKNVVS 142

Query: 284 WNSMIAGYELNGRFMEALELLETMLIGDVLPN------------------------DATL 319
           W  M+ G   +GR  EA  L + + + DV+ +                           +
Sbjct: 143 WTVMLGGLIEDGRVDEARRLFDMIPVKDVVASTNMIGGLCSEGRLSEAREIFDEMPQRNV 202

Query: 320 VSALSAVAGLAVLNKGRWMHSYIVKNGFVV----DGVLGTLLIQMYSKCGSIESALTVFR 375
           V+  S ++G A+ NK       + +  F V    + V  T +++ Y++ G I  A  +F+
Sbjct: 203 VAWTSMISGYAMNNK-----VDVARKLFEVMPDKNEVTWTAMLKGYTRSGRINEAAELFK 257

Query: 376 AISKKKVGHWTAMIVGLGMH-------------------------------GMATQALDL 404
           A+  K V     MI+G G++                               G   +AL L
Sbjct: 258 AMPVKPVAACNGMIMGFGLNGEVGKARWVFDQMKEKDDGTWSALIKIYERKGFELEALAL 317

Query: 405 FNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILC 464
           F+ M R G++P   + I +L+ C     ++ GR+  + ++  +  +  I     L+ +  
Sbjct: 318 FSLMQREGVRPNFPSIISILSVCGSLASLDHGRQVHSQLVRSH-FDLDIYVSSVLITMYI 376

Query: 465 RTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKV-----APDTI 519
           + G L   K   +    + + V+W S+++G   HG    GE A     ++     APD I
Sbjct: 377 KCGDLVTGKRVFDRFSSK-DIVMWNSIIAGYAQHG---FGEKALEVFHEMFSSGAAPDEI 432

Query: 520 GCYVVLSNIYAAAGQWDKVSEVREMMK 546
               VLS    A G   KV E  E+ +
Sbjct: 433 TFIGVLS----ACGYTGKVKEGLEIFE 455


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 254/707 (35%), Positives = 374/707 (52%), Gaps = 86/707 (12%)

Query: 68  INNLHYARSIFDRI-LQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLP 126
           + NL   R IF+   L     V YN +I  Y  N   H AL LF  +      PD+FT  
Sbjct: 92  LGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFT 151

Query: 127 CVIKGAAR-LGAIKEGKQIHGLVFKLGFG-FDKFVLSSLVSMYAK--------------- 169
            V+      +G  ++  Q+H  V K G G     VL++L+S+Y K               
Sbjct: 152 SVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGISCSAMVSA 211

Query: 170 ---FGEI-------------------DL--GRRVFDAMDDKDLVSWNCLIDGYVKKGEVE 205
              F E+                   DL   R VF+AM +    +WN +I GYV  G  +
Sbjct: 212 RKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQ 271

Query: 206 VAMKL----------FDEMPDRDLFSWTCLVDGFS------------------------- 230
            A+ L          FD++    + S    V  F                          
Sbjct: 272 EALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYILKNELNPNHSFCLSVS 331

Query: 231 --------KCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLI 282
                   K  KV+ AR+IFY MP RN+++WNA+++GY+ AG ++ A   F++M +++L+
Sbjct: 332 NALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLL 391

Query: 283 TWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYI 342
           T   MI+G   NG   E L+L + M +    P D     AL+A + L  L  GR +H+ +
Sbjct: 392 TLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQL 451

Query: 343 VKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQAL 402
           V  G+     +G  +I MY+KCG +E+A +VF  +    +  W +MI  LG HG   +A+
Sbjct: 452 VHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAI 511

Query: 403 DLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDI 462
           +LF++M + G+ P  ITF+ VL ACSHAGLV  GR YFN M+  YGI P  +HY  +VD+
Sbjct: 512 ELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDL 571

Query: 463 LCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCY 522
            CR G    A+  I+SMP +P   +W +LL+G R HGN D+G  AA  L K+ P   G Y
Sbjct: 572 FCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTY 631

Query: 523 VVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIH 582
           V+LSNIYA  G+W++V++VR++M+ +  RK+P  S IE    +H F+V D  HP+   ++
Sbjct: 632 VLLSNIYADVGRWNEVAKVRKLMRDQAVRKEPACSWIEVENKVHVFMVDDDVHPEVLSVY 691

Query: 583 SKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRI 642
             L ++  ++K  G++PDT  VL  +E  ++KE  L  HSE+LA+ FG++ +   + +R+
Sbjct: 692 RYLEQLGLEMKKLGYIPDTKFVLHDME-YEQKEHALSTHSEKLAVGFGIMKLPPGATVRV 750

Query: 643 VKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            KN+R+C DCH+  K +S +  REIIVRD  RFHHFKNG CSC+D+W
Sbjct: 751 FKNIRICGDCHNAFKFMSKVARREIIVRDRKRFHHFKNGDCSCRDYW 797



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 117/507 (23%), Positives = 198/507 (39%), Gaps = 125/507 (24%)

Query: 141 GKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVK 200
            + +H  +   GF      L+ L+ MY K   +   R++F+ + + D ++   LI  Y  
Sbjct: 32  ARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNLVYARQLFEEIPNPDAIARTTLITAYCA 91

Query: 201 KGEVEVAMKLFDEMP--DRDLFSWTCLVDGFSKCGKVEIAREIF-------YRMPNRNLV 251
            G +E+  ++F+  P   RD   +  ++ G++  G    A E+F       +R  +    
Sbjct: 92  LGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFT 151

Query: 252 S----------------------------------WNAMINGYMK-AGDVDSAC------ 270
           S                                   NA+++ Y+K A ++  +C      
Sbjct: 152 SVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGISCSAMVSA 211

Query: 271 -ELFDDMEIRDLITWNSMIAGY----ELNGR---------------------------FM 298
            +LFD+M  RD +TW +MI GY    +LNG                            F 
Sbjct: 212 RKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQ 271

Query: 299 EALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKN------GFVVDGV 352
           EAL L   M    +  +D T  + +SA A +     G+ +H+YI+KN       F +   
Sbjct: 272 EALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYILKNELNPNHSFCLS-- 329

Query: 353 LGTLLIQMYSKCGSIESALTVFRAISKKKVGHW--------------------------- 385
           +   LI +Y K   ++ A  +F A+  + +  W                           
Sbjct: 330 VSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKN 389

Query: 386 ----TAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFN 441
               T MI GL  +G   + L LF +M   G +P    F G L ACS  G + +GR+   
Sbjct: 390 LLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHA 449

Query: 442 MMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLS--GARNHG 499
            +++  G E ++     ++ +  + G +E A+S   +MP   + V W S+++  G   HG
Sbjct: 450 QLVH-LGYESSLSVGNAMISMYAKCGVVEAAESVFVTMP-SVDLVSWNSMIAALGQHGHG 507

Query: 500 NKDIGEYAANNLIKVAPDTIGCYVVLS 526
            K I  +       V PD I    VL+
Sbjct: 508 VKAIELFDQMLKEGVFPDRITFLTVLT 534


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 248/663 (37%), Positives = 367/663 (55%), Gaps = 22/663 (3%)

Query: 40  LHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVF 99
           LHA S+   +  +  + S ++ LY          AR +FD ++     VL+N +I  +  
Sbjct: 135 LHAHSIVDGVASNLFVGSAIVDLYFK--FTRAELARKVFD-VMPERDTVLWNTMISGFSR 191

Query: 100 NQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFV 159
           N    +++ +F D+LD  L  D+ TL  V+   A L   + G  I  L  K G   D +V
Sbjct: 192 NSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYV 251

Query: 160 LSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL 219
           L+ L+S+Y+K G+   GR +FD +D  DL+S+N +I GY    E E A+ LF     R+L
Sbjct: 252 LTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLF-----REL 306

Query: 220 FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWN-------------AMINGYMKAGDV 266
            +    V+  +  G + +     +   +R + + +             A+   Y +  +V
Sbjct: 307 LASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEV 366

Query: 267 DSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326
             A +LFD+   + L +WN+MI+GY  NG    A+ L + M+   + PN  T+ S LSA 
Sbjct: 367 QFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMM-PQLSPNPVTVTSILSAC 425

Query: 327 AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWT 386
           A L  L+ G+W+H  I       +  + T L+ MY+KCGSI  A  +F  +  K V  W 
Sbjct: 426 AQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWN 485

Query: 387 AMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIND 446
           AMI G G+HG   +AL LF +M + G+ PT +TF+ +L ACSH+GLV++G   F+ M N+
Sbjct: 486 AMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANN 545

Query: 447 YGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEY 506
           YG +P  EHY C+VDIL R G L  A   IE MP+ P   +W +LL     H N ++   
Sbjct: 546 YGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANV 605

Query: 507 AANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLH 566
           A+  L ++ P+ +G YV+LSNIY+    + K + VR+++KKR   K PG + IE     +
Sbjct: 606 ASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQY 665

Query: 567 EFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLA 626
            F  GD+SHPQ   I   L ++  K++ AG+  +T    L   + +EKE  +  HSE+LA
Sbjct: 666 VFTSGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEKLA 725

Query: 627 IAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCK 686
           IAFGLI+ K  + IRI+KNLRVC DCH+ TK +S I  R I+VRD +RFHHFKNG CSC 
Sbjct: 726 IAFGLISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGICSCG 785

Query: 687 DFW 689
           D+W
Sbjct: 786 DYW 788



 Score =  159 bits (401), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 126/502 (25%), Positives = 222/502 (44%), Gaps = 80/502 (15%)

Query: 43  LSVKTNLIYHSGISSRLLSLYVDPH----INNLHYARSIFDRILQHPSLVLYNLLIKCYV 98
           L ++  LI H GI   L S+    H    +  + + R +F+++   P L L+N+LI+ + 
Sbjct: 31  LQIQAQLILH-GIHYDLSSITKLTHKFFDLGAVAHVRQLFNKV-SKPDLFLFNVLIRGFS 88

Query: 99  FNQRSHEALTLFCDLLDRF-LLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
            N     ++ L+  L     L PDNFT    I  A+RL   + G  +H      G   + 
Sbjct: 89  DNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNL 148

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD- 216
           FV S++V +Y KF   +L R+VFD M ++D V WN +I G+ +    E ++++F +M D 
Sbjct: 149 FVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDV 208

Query: 217 --------------------------------------RDLFSWTCLVDGFSKCGKVEIA 238
                                                  D++  T L+  +SKCGK    
Sbjct: 209 GLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKG 268

Query: 239 REIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFM 298
           R +F ++   +L+S+NAMI+GY    + +SA  LF     R+L+     +          
Sbjct: 269 RILFDQIDQPDLISYNAMISGYTFNHETESAVTLF-----RELLASGQRV---------- 313

Query: 299 EALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLI 358
                           N +TLV  +        L   R + +  +K G ++   + T L 
Sbjct: 314 ----------------NSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALT 357

Query: 359 QMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI 418
            +Y +   ++ A  +F    +K +  W AMI G   +G+  +A+ LF +M    + P  +
Sbjct: 358 TVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPV 416

Query: 419 TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIES 478
           T   +L+AC+  G ++ G ++ + +I    +E  +     LVD+  + G + EA+   + 
Sbjct: 417 TVTSILSACAQLGALSIG-KWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDL 475

Query: 479 MPMRPNFVIWMSLLSGARNHGN 500
           M +  N V W ++++G   HG+
Sbjct: 476 M-VDKNVVTWNAMITGYGLHGH 496


>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 226/573 (39%), Positives = 343/573 (59%), Gaps = 30/573 (5%)

Query: 120 PDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRV 179
           P+ F    +I+G A  G + E    +  + + G G   F  S+L         +DLG++V
Sbjct: 105 PNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQV 164

Query: 180 FDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAR 239
                     +   LI G+                   DL+    ++D + KCG +  AR
Sbjct: 165 H---------AQTILIGGFAS-----------------DLYVGNSMIDLYVKCGFLGCAR 198

Query: 240 EIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFME 299
           ++F  M  R++VSW  +I  Y K GD++SA  LFDD+ ++D++ W +M+ GY  NGR  E
Sbjct: 199 KVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKE 258

Query: 300 ALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDG--VLGTLL 357
           ALE  + M    +  ++ TL   +SA A L  +    W+     ++GF   G  V+G+ L
Sbjct: 259 ALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSAL 318

Query: 358 IQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA 417
           I MYSKCGS + A  VF  + ++ V  +++MI+G  MHG A  AL LF+ M +  ++P  
Sbjct: 319 IDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNK 378

Query: 418 ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIE 477
           +TFIG+L+ACSHAGLV  GR+ F  M   +G+ P+ +HY C+VD+L R G LEEA   ++
Sbjct: 379 VTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVK 438

Query: 478 SMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDK 537
           +MPM PN  +W +LL   R HGN DI + AAN L K+ P+ IG Y++LSNIYA+AG+W++
Sbjct: 439 TMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFKLEPNGIGNYILLSNIYASAGRWEE 498

Query: 538 VSEVREMMKKRGFRKDPGSSSIEHR-GVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAG 596
           VS++R++++++GF+K+PG S  E + G +H+F  GD +HP++ EI   L ++  +L++ G
Sbjct: 499 VSKLRKVIREKGFKKNPGCSWFEGKNGEIHDFFAGDTTHPRSSEIRQALKQLIERLRSHG 558

Query: 597 HVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVT 656
           + P+       + D  EKE  L +HSE+LA+A+GL+  ++   I+I+KN+R+C DCH+V 
Sbjct: 559 YKPNLGSAPYDLTDD-EKERILMSHSEKLALAYGLLCTEAGDTIKIMKNIRICEDCHNVM 617

Query: 657 KLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
              S I  REIIVRDN RFHHF NG+CSC +FW
Sbjct: 618 CAASEITGREIIVRDNMRFHHFHNGTCSCGNFW 650



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 121/479 (25%), Positives = 225/479 (46%), Gaps = 52/479 (10%)

Query: 1   MQTQTLQHSSPIHALQQHLPSRLHW---NILKFSSTHKETQQLHALSVKTNLIYHSGISS 57
           +QT+   +  P   LQ H    L W   +IL   +   + +Q+HA  ++  L   S + +
Sbjct: 20  LQTRGSPNFIPFPQLQ-HQRKLLEWRLMSILHDCTLFSQIKQVHAHIIRNGLSQCSYVLT 78

Query: 58  RLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRF 117
           +L+ +     +    Y   +F ++  +P+  L+  +I+ Y       E+   +  +    
Sbjct: 79  KLIRMLTKVDVPMGSYPLLVFGQV-NYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDG 137

Query: 118 LLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKL-GFGFDKFVLSSLVSMYAKFGEIDLG 176
           + P +FT   + K       +  GKQ+H     + GF  D +V +S++ +Y K G +   
Sbjct: 138 VGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCA 197

Query: 177 RRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVE 236
           R+VFD M ++D+VSW  LI  Y K G++E A  LFD++P +D+ +WT +V G+++ G+ +
Sbjct: 198 RKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPK 257

Query: 237 IAREIFYRM-----------------------------------------PNRNLVSWNA 255
            A E F +M                                         P+ N+V  +A
Sbjct: 258 EALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSA 317

Query: 256 MINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPN 315
           +I+ Y K G  D A ++F+ M+ R++ +++SMI GY ++GR   AL+L   ML  ++ PN
Sbjct: 318 LIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPN 377

Query: 316 DATLVSALSAVAGLAVLNKGRWMHSYIVK-NGFVVDGVLGTLLIQMYSKCGSIESALTVF 374
             T +  LSA +   ++ +GR + + + K  G          ++ +  + G +E AL + 
Sbjct: 378 KVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLV 437

Query: 375 RAIS-KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI-TFIGVLNACSHAG 431
           + +  +   G W A++    +HG    A    N++ +  ++P  I  +I + N  + AG
Sbjct: 438 KTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFK--LEPNGIGNYILLSNIYASAG 494



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 124/311 (39%), Gaps = 40/311 (12%)

Query: 272 LFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAV 331
           +F  +   +   W +MI GY L G   E+      M    V P   T  +   A      
Sbjct: 98  VFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALN 157

Query: 332 LNKGRWMHSY-IVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGH------ 384
           ++ G+ +H+  I+  GF  D  +G  +I +Y KCG +  A  VF  +S++ V        
Sbjct: 158 MDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIV 217

Query: 385 -------------------------WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAIT 419
                                    WTAM+ G   +G   +AL+ F KM  +GM+   +T
Sbjct: 218 AYAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVT 277

Query: 420 FIGVLNACSHAGLVNDGRRYFNMM-INDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIES 478
             GV++AC+  G V       ++   + +G    +     L+D+  + G  +EA    E 
Sbjct: 278 LAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEV 337

Query: 479 MPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIK--VAPDTIGCYVVLSNIYAAAGQWD 536
           M  R N   + S++ G   HG         ++++K  + P+     V    I +A     
Sbjct: 338 MKER-NVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNK----VTFIGILSACSHAG 392

Query: 537 KVSEVREMMKK 547
            V + R++  K
Sbjct: 393 LVEQGRQLFAK 403



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 101/223 (45%), Gaps = 12/223 (5%)

Query: 336 RWMHSYIVKNGFVVDGVLGTLLIQMYSKC----GSIESALTVFRAISKKKVGHWTAMIVG 391
           + +H++I++NG      + T LI+M +K     GS    L VF  ++      WTAMI G
Sbjct: 59  KQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSY--PLLVFGQVNYPNPFLWTAMIRG 116

Query: 392 LGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP 451
             + G+ +++ + + +M R G+ P + TF  +  AC  A  ++ G++     I   G   
Sbjct: 117 YALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFAS 176

Query: 452 TIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNL 511
            +     ++D+  + G+L  A+   + M  R + V W  L+     +G+ +    +A+ L
Sbjct: 177 DLYVGNSMIDLYVKCGFLGCARKVFDEMSER-DVVSWTELIVAYAKYGDME----SASGL 231

Query: 512 IKVAP-DTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKD 553
               P   +  +  +   YA  G+  +  E  + M+  G   D
Sbjct: 232 FDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETD 274


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 240/702 (34%), Positives = 391/702 (55%), Gaps = 51/702 (7%)

Query: 33  THKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNL 92
           +  + +QLHA  ++T  + H+  +S ++S+Y +  + +         + L+ P ++ +  
Sbjct: 20  SKSQAKQLHAQFIRTQSLSHTS-ASIVISIYTNLKLLHEALLLF---KTLKSPPVLAWKS 75

Query: 93  LIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLG 152
           +I+C+       +AL  F ++      PD+   P V+K    +  ++ G+ +HG + +LG
Sbjct: 76  VIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLG 135

Query: 153 FGFDKFVLSSLVSMYAK-------------------------------------FGEIDL 175
              D +  ++L++MYAK                                     FG ID 
Sbjct: 136 MDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFG-IDS 194

Query: 176 GRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSK 231
            RRVF+ M  KD+VS+N +I GY + G  E A+++  EM   DL    F+ + ++  FS+
Sbjct: 195 VRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSE 254

Query: 232 CGKVEIAREIFYRMPNRNLVS----WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSM 287
              V   +EI   +  + + S     +++++ Y K+  ++ +  +F  +  RD I+WNS+
Sbjct: 255 YVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSL 314

Query: 288 IAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGF 347
           +AGY  NGR+ EAL L   M+   V P      S + A A LA L+ G+ +H Y+++ GF
Sbjct: 315 VAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGF 374

Query: 348 VVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNK 407
             +  + + L+ MYSKCG+I++A  +F  ++      WTA+I+G  +HG   +A+ LF +
Sbjct: 375 GSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEE 434

Query: 408 MCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTG 467
           M R G+KP  + F+ VL ACSH GLV++   YFN M   YG+   +EHY  + D+L R G
Sbjct: 435 MKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAG 494

Query: 468 YLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSN 527
            LEEA + I  M + P   +W +LLS    H N ++ E  A  +  V  + +G YV++ N
Sbjct: 495 KLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCN 554

Query: 528 IYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSE 587
           +YA+ G+W +++++R  M+K+G RK P  S IE +   H FV GD+SHP  D+I+  L  
Sbjct: 555 MYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKA 614

Query: 588 MRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLR 647
           +  +++  G+V DT+ VL  ++++ ++E  L  HSERLA+AFG+IN +  + IR+ KN+R
Sbjct: 615 VMEQMEKEGYVADTSGVLHDVDEEHKREL-LFGHSERLAVAFGIINTEPGTTIRVTKNIR 673

Query: 648 VCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           +C DCH   K +S I  REIIVRDNSRFHHF  G+CSC D+W
Sbjct: 674 ICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 237/669 (35%), Positives = 388/669 (57%), Gaps = 21/669 (3%)

Query: 35  KETQQLHALSVKTNLI-YHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLL 93
           K+ Q LHA+ ++T L+ +   + + L+++Y      +L  AR  FD  +   +LV +N L
Sbjct: 75  KQGQLLHAMILETQLLEFDIILGTALITMYA--RCRDLELARKTFDE-MGKKTLVTWNAL 131

Query: 94  IKCYVFNQRSHEALTLFCDLLDRF---LLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFK 150
           I  Y  N     AL ++ D++ +    + PD  T    +   + +G I +G++I      
Sbjct: 132 IAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQGREIEARTVA 191

Query: 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
            G+  D  V ++L++MY+K G ++  R+VFD + ++D+++WN +I GY K+G    A++L
Sbjct: 192 SGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALEL 251

Query: 211 FDEM----PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR----NLVSWNAMINGYMK 262
           F  M    P  ++ ++  L+   +    +E  R I  ++       +LV  N ++N Y K
Sbjct: 252 FQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVIGNVLLNMYTK 311

Query: 263 -AGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVS 321
            +  ++ A ++F+ +  RD+ITWN +I  Y   G+  +AL++ + M + +V PN+ TL +
Sbjct: 312 CSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSN 371

Query: 322 ALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKK 381
            LSA A L    +G+ +H+ I       D VL   L+ MY++CGS++  + VF AI  K 
Sbjct: 372 VLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKS 431

Query: 382 VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFN 441
           +  W+ +I     HG +   L+ F ++ + G+    +T +  L+ACSH G++ +G + F 
Sbjct: 432 LVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQSFL 491

Query: 442 MMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNK 501
            M+ D+G+ P   H+ C+VD+L R G LE A++ I  MP  P+ V W SLLSG + H + 
Sbjct: 492 SMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDT 551

Query: 502 DIGEYAANNLIKV-APDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIE 560
                 A+ L ++ + D      +LSN+YA AG+WD   +VR+   +R  RK+PG S IE
Sbjct: 552 KRAARVADKLFELESEDEHSTVTLLSNVYAEAGRWD---DVRKTRNRRAARKNPGCSYIE 608

Query: 561 HRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELEN 620
               +HEFV GDKSHP+ + I +++  +  ++K AG+VPD   VL  ++++ EKE  L  
Sbjct: 609 INDTVHEFVAGDKSHPEEELIAAEIKRLSKQMKDAGYVPDMRMVLHNVKEE-EKEQMLCY 667

Query: 621 HSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKN 680
           HSE+LAIA+GLI+    +P+ IVKNLR C DCH+  K +S I  R+I+VRD++RFHHF+N
Sbjct: 668 HSEKLAIAYGLISTPPGTPLHIVKNLRACVDCHAAAKFISRIVGRKIVVRDSTRFHHFEN 727

Query: 681 GSCSCKDFW 689
           GSCSCKD+W
Sbjct: 728 GSCSCKDYW 736



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 132/437 (30%), Positives = 225/437 (51%), Gaps = 17/437 (3%)

Query: 82  LQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEG 141
           ++HP+ V + L++  +  N    EAL  +  ++   L PD       I   +    +K+G
Sbjct: 18  IEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMFVVAIGVCSSSKDLKQG 77

Query: 142 KQIHGLVFKLG-FGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVK 200
           + +H ++ +     FD  + ++L++MYA+  +++L R+ FD M  K LV+WN LI GY +
Sbjct: 78  QLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWNALIAGYSR 137

Query: 201 KGEVEVAMKLFDEM---------PDRDLFS---WTCLVDGFSKCGKVEIAREIFYRMPNR 248
            G+   A+K++ +M         PD   FS   + C V G    G+   AR +     + 
Sbjct: 138 NGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQGREIEARTVASGYASD 197

Query: 249 NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETML 308
           ++V  NA+IN Y K G ++SA ++FD ++ RD+I WN+MI+GY   G   +ALEL + M 
Sbjct: 198 SIVQ-NALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMG 256

Query: 309 IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKC-GSI 367
             D  PN  T +  L+A   L  L +GR +H  + ++G+  D V+G +L+ MY+KC  S+
Sbjct: 257 PNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVIGNVLLNMYTKCSSSL 316

Query: 368 ESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNAC 427
           E A  VF  +  + V  W  +IV    +G A  ALD+F +M    + P  IT   VL+AC
Sbjct: 317 EEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSAC 376

Query: 428 SHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVI 487
           +  G    G +  + +I     +  +     L+++  R G L++      ++  + + V 
Sbjct: 377 AVLGAKRQG-KAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDK-SLVS 434

Query: 488 WMSLLSGARNHGNKDIG 504
           W +L++    HG+   G
Sbjct: 435 WSTLIAAYAQHGHSRTG 451



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 114/381 (29%), Positives = 191/381 (50%), Gaps = 21/381 (5%)

Query: 166 MYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDRDL 219
           MY K G +     VF A++  + VSW  ++  + + G    A+  +  M      PD  +
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 220 FS---WTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDM 276
           F      C      K G++  A  +  ++   +++   A+I  Y +  D++ A + FD+M
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 277 EIRDLITWNSMIAGYELNGRFMEALELLETMLIGD---VLPNDATLVSALSAVAGLAVLN 333
             + L+TWN++IAGY  NG    AL++ + M+      + P+  T  SAL A + +  ++
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDIS 180

Query: 334 KGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLG 393
           +GR + +  V +G+  D ++   LI MYSKCGS+ESA  VF  +  + V  W  MI G  
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYA 240

Query: 394 MHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTI 453
             G ATQAL+LF +M     KP  +TFIG+L AC++   +  G R  +  + ++G E  +
Sbjct: 241 KQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQG-RAIHRKVKEHGYESDL 299

Query: 454 EHYGCLVDILCR-TGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGN-KD-IGEYAANN 510
                L+++  + +  LEEA+   E +  R + + W  L+     +G  KD +  +    
Sbjct: 300 VIGNVLLNMYTKCSSSLEEARQVFERLRTR-DVITWNILIVAYVQYGQAKDALDIFKQMQ 358

Query: 511 LIKVAPDTIGCYVVLSNIYAA 531
           L  VAP+ I     LSN+ +A
Sbjct: 359 LENVAPNEI----TLSNVLSA 375


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 248/663 (37%), Positives = 367/663 (55%), Gaps = 22/663 (3%)

Query: 40  LHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVF 99
           LHA S+   +  +  + S ++ LY          AR +FD ++     VL+N +I  +  
Sbjct: 135 LHAHSIVDGVASNLFVGSAIVDLYFK--FTRAELARKVFD-VMPERDTVLWNTMISGFSR 191

Query: 100 NQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFV 159
           N    +++ +F D+LD  L  D+ TL  V+   A L   + G  I  L  K G   D +V
Sbjct: 192 NSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYV 251

Query: 160 LSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL 219
           L+ L+S+Y+K G+   GR +FD +D  DL+S+N +I GY    E E A+ LF     R+L
Sbjct: 252 LTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLF-----REL 306

Query: 220 FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWN-------------AMINGYMKAGDV 266
            +    V+  +  G + +     +   +R + + +             A+   Y +  +V
Sbjct: 307 LASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEV 366

Query: 267 DSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326
             A +LFD+   + L +WN+MI+GY  NG    A+ L + M+   + PN  T+ S LSA 
Sbjct: 367 QFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMM-PQLSPNPVTVTSILSAC 425

Query: 327 AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWT 386
           A L  L+ G+W+H  I       +  + T L+ MY+KCGSI  A  +F  +  K V  W 
Sbjct: 426 AQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWN 485

Query: 387 AMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIND 446
           AMI G G+HG   +AL LF +M + G+ PT +TF+ +L ACSH+GLV++G   F+ M N+
Sbjct: 486 AMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANN 545

Query: 447 YGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEY 506
           YG +P  EHY C+VDIL R G L  A   IE MP+ P   +W +LL     H N ++   
Sbjct: 546 YGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANV 605

Query: 507 AANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLH 566
           A+  L ++ P+ +G YV+LSNIY+    + K + VR+++KKR   K PG + IE     +
Sbjct: 606 ASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQY 665

Query: 567 EFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLA 626
            F  GD+SHPQ   I   L ++  K++ AG+  +T    L   + +EKE  +  HSE+LA
Sbjct: 666 VFTSGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEKLA 725

Query: 627 IAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCK 686
           IAFGLI+ K  + IRI+KNLRVC DCH+ TK +S I  R I+VRD +RFHHFKNG CSC 
Sbjct: 726 IAFGLISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGICSCG 785

Query: 687 DFW 689
           D+W
Sbjct: 786 DYW 788



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 126/502 (25%), Positives = 223/502 (44%), Gaps = 80/502 (15%)

Query: 43  LSVKTNLIYHSGISSRLLSLYVDPH----INNLHYARSIFDRILQHPSLVLYNLLIKCYV 98
           L ++  LI H GI   L S+    H    +  + + R +F+++   P L L+N+LI+ + 
Sbjct: 31  LQIQAQLILH-GIHYDLSSITKLTHKFFDLGAVAHVRQLFNKV-SKPDLFLFNVLIRGFS 88

Query: 99  FNQRSHEALTLFCDLLDRF-LLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
            N     ++ L+  L  +  L PDNFT    I  A+RL   + G  +H      G   + 
Sbjct: 89  DNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNL 148

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD- 216
           FV S++V +Y KF   +L R+VFD M ++D V WN +I G+ +    E ++++F +M D 
Sbjct: 149 FVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDV 208

Query: 217 --------------------------------------RDLFSWTCLVDGFSKCGKVEIA 238
                                                  D++  T L+  +SKCGK    
Sbjct: 209 GLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKG 268

Query: 239 REIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFM 298
           R +F ++   +L+S+NAMI+GY    + +SA  LF     R+L+     +          
Sbjct: 269 RILFDQIDQPDLISYNAMISGYTFNHETESAVTLF-----RELLASGQRV---------- 313

Query: 299 EALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLI 358
                           N +TLV  +        L   R + +  +K G ++   + T L 
Sbjct: 314 ----------------NSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALT 357

Query: 359 QMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI 418
            +Y +   ++ A  +F    +K +  W AMI G   +G+  +A+ LF +M    + P  +
Sbjct: 358 TVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPV 416

Query: 419 TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIES 478
           T   +L+AC+  G ++ G ++ + +I    +E  +     LVD+  + G + EA+   + 
Sbjct: 417 TVTSILSACAQLGALSIG-KWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDL 475

Query: 479 MPMRPNFVIWMSLLSGARNHGN 500
           M +  N V W ++++G   HG+
Sbjct: 476 M-VDKNVVTWNAMITGYGLHGH 496


>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 261/756 (34%), Positives = 412/756 (54%), Gaps = 116/756 (15%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLS----LYVDPHINNLHYARSIFDRILQHPSLVLYNLL 93
           +QLHA  +  +L +H+   + L++    L   PH     Y   +F+  L +P++ ++  +
Sbjct: 18  RQLHAQIIHNSLHHHNYWVALLINHCTRLRAPPH-----YTHLLFNSTL-NPNVFVFTSM 71

Query: 94  IKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGA--------------------- 132
           ++ Y   Q   + + +F  +    + PD F  P +IK A                     
Sbjct: 72  LRFYSHLQDHAKVVLMFEHMQGCGVRPDAFVYPILIKSAGNGGIGFHAHVLKLGHGSDAF 131

Query: 133 ---------ARLGAIKEGKQIHGLV-----------------------------FKLGFG 154
                    ARLG I   +++   +                             F +   
Sbjct: 132 VRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFDVMPE 191

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
            +    +++V+ YAK  +++  RR FD M ++ +VSWN ++ GY + G  E  ++LFDEM
Sbjct: 192 RNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFDEM 251

Query: 215 ------PDR---------------------------------DLFSWTCLVDGFSKCGKV 235
                 PD                                  + F  T L+D ++KCG +
Sbjct: 252 VNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCFVRTALLDMYAKCGSI 311

Query: 236 EIAREIFYRM-PNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELN 294
             AR IF  +   RN V+WNAMI+ Y + G++DSA ELF+ M  R+++TWNSMIAGY  N
Sbjct: 312 GAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYAQN 371

Query: 295 GRFMEALELLETMLIGDVL-PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVL 353
           G+   A+EL + M+    L P++ T+VS +SA   L  L  G W+  ++ +N   +    
Sbjct: 372 GQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISG 431

Query: 354 GTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGM 413
              +I MYS+CGS+E A  VF+ ++ + V  +  +I G   HG   +A++L + M   G+
Sbjct: 432 HNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGI 491

Query: 414 KPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAK 473
           +P  +TFIGVL ACSHAGL+ +GR+ F  +      +P I+HY C+VD+L R G LE+AK
Sbjct: 492 EPDRVTFIGVLTACSHAGLLEEGRKVFESIK-----DPAIDHYACMVDLLGRVGELEDAK 546

Query: 474 STIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAG 533
            T+E MPM P+  ++ SLL+ +R H   ++GE AAN L ++ PD  G +++LSNIYA+AG
Sbjct: 547 RTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAG 606

Query: 534 QWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLK 593
           +W  V  +RE MKK G +K  G S +E+ G LH+F+V D+SH ++D+I+  L E+R K++
Sbjct: 607 RWKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIELRKKMR 666

Query: 594 AAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCH 653
            AG++ D + VL  +E+++++E  +  HSE+LAI + L+  ++ + IR+VKNLRVC DCH
Sbjct: 667 EAGYIADKSCVLRDVEEEEKEEI-VGTHSEKLAICYALLVSEAGAVIRVVKNLRVCWDCH 725

Query: 654 SVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           +  K++S +  R IIVRDN+RFH F +G CSCKD+W
Sbjct: 726 TAIKMISKLEGRVIIVRDNNRFHCFNDGLCSCKDYW 761


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 252/666 (37%), Positives = 368/666 (55%), Gaps = 17/666 (2%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           +  +QLHAL +       + +++ L+++Y       L +A  +FD + Q  +LV +  +I
Sbjct: 22  RRGKQLHALLICAGYTPCTFLTNHLVNMY--SKCGELDHALKLFDTMPQR-NLVSWTAMI 78

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
                N +  EA+  FC +     +P  F     I+  A LG+I+ GKQ+H L  K G G
Sbjct: 79  SGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIG 138

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
            + FV S+L  MY+K G +    +VF+ M  KD VSW  +IDGY K GE E A+  F +M
Sbjct: 139 SELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKM 198

Query: 215 PDRDL-FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSW---------NAMINGYMKAG 264
            D ++      L      CG ++  +  F R  + ++V           NA+ + Y KAG
Sbjct: 199 IDEEVTIDQHVLCSTLGACGALKACK--FGRSVHSSVVKLGFESDIFVGNALTDMYSKAG 256

Query: 265 DVDSACELFD-DMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSAL 323
           D++SA  +F  D E R+++++  +I GY    +  + L +   +    + PN+ T  S +
Sbjct: 257 DMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLI 316

Query: 324 SAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVG 383
            A A  A L +G  +H+ ++K  F  D  + ++L+ MY KCG +E A+  F  I      
Sbjct: 317 KACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEI 376

Query: 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMM 443
            W +++   G HG+   A+ +F +M   G+KP AITFI +L  CSHAGLV +G  YF  M
Sbjct: 377 AWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSM 436

Query: 444 INDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDI 503
              YG+ P  EHY C++D+L R G L+EAK  I  MP  PN   W S L   R HG+K++
Sbjct: 437 DKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEM 496

Query: 504 GEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRG 563
           G+ AA  L+K+ P   G  V+LSNIYA   QW+ V  VR  M+    +K PG S ++   
Sbjct: 497 GKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGY 556

Query: 564 VLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSE 623
             H F   D SHP+   I+ KL  + +++KAAG+VP T  V L ++D   KE  L  HSE
Sbjct: 557 KTHVFGAEDWSHPRKSAIYEKLDTLLDQIKAAGYVPRTDSVPLDMDDSM-KEKLLHRHSE 615

Query: 624 RLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSC 683
           R+A+AF LI++    PI + KNLRVC DCHS  K +S +  R+IIVRDNSRFHHF +GSC
Sbjct: 616 RIAVAFALISMPIGKPIIVKKNLRVCVDCHSAIKFISKVTGRKIIVRDNSRFHHFTDGSC 675

Query: 684 SCKDFW 689
           SC D+W
Sbjct: 676 SCGDYW 681



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 119/423 (28%), Positives = 190/423 (44%), Gaps = 75/423 (17%)

Query: 118 LLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGR 177
           +L D   L  VI+  A+   ++ GKQ+H L+   G+    F+ + LV+MY+K GE+D   
Sbjct: 1   MLRDTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHAL 60

Query: 178 RVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLF------DEMPDR-------------- 217
           ++FD M  ++LVSW  +I G  +  +   A++ F       E+P +              
Sbjct: 61  KLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLG 120

Query: 218 -------------------DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMIN 258
                              +LF  + L D +SKCG +  A ++F  MP ++ VSW AMI+
Sbjct: 121 SIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMID 180

Query: 259 GYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDAT 318
           GY K G+                               F EAL   + M+  +V  +   
Sbjct: 181 GYSKIGE-------------------------------FEEALLAFKKMIDEEVTIDQHV 209

Query: 319 LVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS 378
           L S L A   L     GR +HS +VK GF  D  +G  L  MYSK G +ESA  VF   S
Sbjct: 210 LCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDS 269

Query: 379 K-KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGR 437
           + + V  +T +I G        + L +F ++ R G++P   TF  ++ AC++   +  G 
Sbjct: 270 ECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGT 329

Query: 438 R-YFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGAR 496
           + +  +M  ++  +P +     LVD+  + G LE+A    + +   P  + W SL+S   
Sbjct: 330 QLHAQVMKINFDEDPFVSSI--LVDMYGKCGLLEQAIQAFDEIG-DPTEIAWNSLVSVFG 386

Query: 497 NHG 499
            HG
Sbjct: 387 QHG 389


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 254/707 (35%), Positives = 373/707 (52%), Gaps = 86/707 (12%)

Query: 68  INNLHYARSIFDRI-LQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLP 126
           + NL   R IF+   L     V YN +I  Y  N   H AL LF  +      PD+FT  
Sbjct: 92  LGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFT 151

Query: 127 CVIKGAAR-LGAIKEGKQIHGLVFKLGFG-FDKFVLSSLVSMYAK--------------- 169
            V+      +G  ++  Q+H  V K G G     VL++L+S+Y K               
Sbjct: 152 SVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGIPCSAMVSA 211

Query: 170 ---FGEI-------------------DL--GRRVFDAMDDKDLVSWNCLIDGYVKKGEVE 205
              F E+                   DL   R VF+AM +    +WN +I GYV  G  +
Sbjct: 212 RKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQ 271

Query: 206 VAMKL----------FDEMPDRDLFSWTCLVDGFS------------------------- 230
            A+ L          FD++    + S    V  F                          
Sbjct: 272 EALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYILKNELNPNHSFCLSVS 331

Query: 231 --------KCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLI 282
                   K  KV+ AR+IFY MP RN+++WNA+++GY+ AG ++ A   F++M +++L+
Sbjct: 332 NALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLL 391

Query: 283 TWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYI 342
           T   MI+G   NG   E L+L + M +    P D     AL+A + L  L  GR +H+ +
Sbjct: 392 TLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQL 451

Query: 343 VKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQAL 402
           V  G+     +G  +I MY+KCG +E+A +VF  +    +  W +MI  LG HG   +A+
Sbjct: 452 VHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAI 511

Query: 403 DLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDI 462
           +LF++M + G+ P  ITF+ VL ACSHAGLV  GR YFN M+  YGI P  +HY  +VD+
Sbjct: 512 ELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDL 571

Query: 463 LCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCY 522
            CR G    A+  I+SMP +P   +W +LL+G R HGN D+G  AA  L K+ P   G Y
Sbjct: 572 FCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTY 631

Query: 523 VVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIH 582
           V+LSNIYA  G+W+ V++VR++M+ +  RK+P  S IE    +H F+V D  HP+   ++
Sbjct: 632 VLLSNIYADVGRWNDVAKVRKLMRDQAVRKEPACSWIEVENKVHVFMVDDDVHPEVLSVY 691

Query: 583 SKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRI 642
             L ++  ++K  G++PDT  VL  +E  ++KE  L  HSE+LA+ FG++ +   + +R+
Sbjct: 692 RYLEQLGLEMKKLGYIPDTKFVLHDME-YEQKEHALSTHSEKLAVGFGIMKLPPDATVRV 750

Query: 643 VKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            KN+R+C DCH+  K +S +  REIIVRD  RFHHFKNG CSC+D+W
Sbjct: 751 FKNIRICGDCHNAFKFMSKVARREIIVRDRKRFHHFKNGDCSCRDYW 797



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 119/509 (23%), Positives = 200/509 (39%), Gaps = 129/509 (25%)

Query: 141 GKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVK 200
            + +H  +   GF      L+ L+ MY K   +   R++F+ + + D ++   LI  Y  
Sbjct: 32  ARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNVVYARQLFEEIPNPDAIARTTLITAYCA 91

Query: 201 KGEVEVAMKLFDEMP--DRDLFSWTCLVDGFSKCGKVEIAREIF-------YRMPNRNLV 251
            G +E+  ++F+  P   RD   +  ++ G++  G    A E+F       +R  +    
Sbjct: 92  LGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFT 151

Query: 252 S----------------------------------WNAMINGYMKAGD--------VDSA 269
           S                                   NA+++ Y+K           + SA
Sbjct: 152 SVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGIPCSAMVSA 211

Query: 270 CELFDDMEIRDLITWNSMIAGY----ELNGR---------------------------FM 298
            +LFD+M  RD +TW +MI GY    +LNG                            F 
Sbjct: 212 RKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQ 271

Query: 299 EALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKN------GFVVDGV 352
           EAL L   M    +  +D T  + +SA A +     G+ MH+YI+KN       F +   
Sbjct: 272 EALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYILKNELNPNHSFCLS-- 329

Query: 353 LGTLLIQMYSKCGSIESALTVFRAISKKKVGHW--------------------------- 385
           +   LI +Y K   ++ A  +F A+  + +  W                           
Sbjct: 330 VSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKN 389

Query: 386 ----TAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFN 441
               T MI GL  +G   + L LF +M   G +P    F G L ACS  G + +GR+   
Sbjct: 390 LLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHA 449

Query: 442 MMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLS--GARNHG 499
            +++  G E ++     ++ +  + G +E A+S   +MP   + V W S+++  G   HG
Sbjct: 450 QLVH-LGYESSLSVGNAMISMYAKCGVVEAAESVFVTMP-SVDLVSWNSMIAALGQHGHG 507

Query: 500 NKDIGEYAANNLIK--VAPDTIGCYVVLS 526
            K I  +  + ++K  V PD I    VL+
Sbjct: 508 VKAIELF--DQMLKEGVFPDRITFLTVLT 534


>gi|302760843|ref|XP_002963844.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
 gi|300169112|gb|EFJ35715.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
          Length = 781

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 248/689 (35%), Positives = 400/689 (58%), Gaps = 27/689 (3%)

Query: 19  LPSRLHW----NILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYA 74
           +P+++ +    N    + + K+  ++H   ++        + + L+++Y     N     
Sbjct: 102 MPTKVTYVAILNACASTESLKDGMEIHGQILQQGFEGDVFVGTALINMY-----NKCGSV 156

Query: 75  RSIFD--RILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGA 132
           R  +D  + L+H  +V +  +I   V + +   A  L+  +    ++P+  TL  V    
Sbjct: 157 RGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAY 216

Query: 133 ARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWN 192
                + EGK ++GLV       D  V++S V+M+   G +   RR+F+ M D+D+V+WN
Sbjct: 217 GDPNYLSEGKFVYGLVSSGVMESDVRVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWN 276

Query: 193 CLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKC-----GKV--EIAREI 241
            +I  YV+      A++LF  +    +     ++  +++ ++       GKV  E+ +E 
Sbjct: 277 IVITLYVQNENFGEAVRLFGRLQQDGVKANDITFVLMLNVYTSLTSLAKGKVIHELVKEA 336

Query: 242 FYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEAL 301
            Y   +R+ V   A+++ Y +      A ++F DM  +D+ITW  M   Y  NG   EAL
Sbjct: 337 GY---DRDAVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEAL 393

Query: 302 ELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMY 361
           +L + M +    P  ATLV+ L   A LA L KGR +HS+I++N F ++ V+ T LI MY
Sbjct: 394 QLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENRFRMEMVVETALINMY 453

Query: 362 SKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFI 421
            KCG +  A++VF  ++K+ +  W +M+     HG   + L LFN+M   G+K  A++F+
Sbjct: 454 GKCGKMAEAMSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGVKADAVSFV 513

Query: 422 GVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP- 480
            VL+A SH+G V DG +YF  M+ D+ I PT E YGC+VD+L R G ++EA   +  +  
Sbjct: 514 SVLSALSHSGSVTDGYQYFVAMLQDFSITPTPELYGCVVDLLGRAGRIQEAVDIVLKLSG 573

Query: 481 MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSE 540
             P+ ++WM+LL   R H   D  + AA  +++  P   G YVVLSN+YAAAG WD V+ 
Sbjct: 574 CLPDGILWMTLLGACRTHNKTDQAKAAAEQVLERDPSHSGAYVVLSNVYAAAGDWDGVNR 633

Query: 541 VREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPD 600
           +R++M+ RG +K+PG SSIE    +HEF+ GD+SHP+   I+++L  + ++++AAG++PD
Sbjct: 634 MRKLMRSRGVKKEPGRSSIEILNRVHEFLEGDRSHPRRHPIYAELDVLNSEMRAAGYIPD 693

Query: 601 TTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLS 660
           T  +L  +ED++ KE  L  HSERLAIAFGLI+    +P+R++KNLRVC+DCH+ TK +S
Sbjct: 694 TKMILHDVEDER-KEDMLFYHSERLAIAFGLISTPPGTPLRVIKNLRVCSDCHTATKYIS 752

Query: 661 GIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            +  REI+VRD  RFH+FK+G CSCKD+W
Sbjct: 753 KLRGREILVRDTHRFHNFKDGRCSCKDYW 781



 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 130/466 (27%), Positives = 222/466 (47%), Gaps = 15/466 (3%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           A+ +F+ IL+   +  +  +I  Y        AL +F  + +  ++P   T   ++   A
Sbjct: 58  AQQVFE-ILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACA 116

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
              ++K+G +IHG + + GF  D FV ++L++MY K G +      F  ++ +D+VSW  
Sbjct: 117 STESLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTA 176

Query: 194 LIDGYVKKGEVEVAMKLFDEMP-DRDLFSWTCLVDGFSKCGKVEIARE--IFYRMPNRNL 250
           +I   V+  +  +A  L+  M  D  + +   L   F+  G      E    Y + +  +
Sbjct: 177 MIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKFVYGLVSSGV 236

Query: 251 VS-----WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLE 305
           +       N+ +N +  AG +  A  LF+DM  RD++TWN +I  Y  N  F EA+ L  
Sbjct: 237 MESDVRVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFG 296

Query: 306 TMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCG 365
            +    V  ND T V  L+    L  L KG+ +H  + + G+  D V+ T L+ +Y +C 
Sbjct: 297 RLQQDGVKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDAVVATALMSLYGRCE 356

Query: 366 SIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN 425
           +   A  +F  +  K V  WT M V    +G   +AL LF +M   G +PT+ T + VL+
Sbjct: 357 APGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLD 416

Query: 426 ACSHAGLVNDGRRYFNMMI-NDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPN 484
            C+H   +  GR+  + +I N + +E  +E    L+++  + G + EA S  E M  R +
Sbjct: 417 TCAHLAALQKGRQIHSHIIENRFRMEMVVE--TALINMYGKCGKMAEAMSVFEKMAKR-D 473

Query: 485 FVIWMSLLSGARNHGNKD--IGEYAANNLIKVAPDTIGCYVVLSNI 528
            ++W S+L     HG  D  +  +    L  V  D +    VLS +
Sbjct: 474 ILVWNSMLGAYAQHGYYDETLQLFNQMQLDGVKADAVSFVSVLSAL 519



 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 158/347 (45%), Gaps = 15/347 (4%)

Query: 215 PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNA----MINGYMKAGDVDSAC 270
           PD   F    L+   S    V+  R + + + +R     N     +I  Y + G V  A 
Sbjct: 2   PDTAFF--VALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQ 59

Query: 271 ELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLA 330
           ++F+ +E +D+  W  MI  Y   G +  AL +   M   DV+P   T V+ L+A A   
Sbjct: 60  QVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTE 119

Query: 331 VLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIV 390
            L  G  +H  I++ GF  D  +GT LI MY+KCGS+  A   F+ +  + V  WTAMI 
Sbjct: 120 SLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIA 179

Query: 391 GLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIE 450
               H     A  L+ +M   G+ P  IT   V NA      +++G+  +  +++   +E
Sbjct: 180 ACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKFVYG-LVSSGVME 238

Query: 451 PTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANN 510
             +      V++    G L +A+   E M  R + V W  +++      N++ GE A   
Sbjct: 239 SDVRVMNSAVNMFGNAGLLGDARRLFEDMVDR-DVVTWNIVITLYVQ--NENFGE-AVRL 294

Query: 511 LIKVAPDTIGC----YVVLSNIYAAAGQWDKVSEVREMMKKRGFRKD 553
             ++  D +      +V++ N+Y +     K   + E++K+ G+ +D
Sbjct: 295 FGRLQQDGVKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRD 341



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 149/314 (47%), Gaps = 8/314 (2%)

Query: 120 PDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRV 179
           PD      +++  +    +  G+++H  V   GF  +  V   L+ MYA+ G +   ++V
Sbjct: 2   PDTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQV 61

Query: 180 FDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLF-SWTCLVDGFSKCGK---- 234
           F+ ++ KD+ +W  +I  Y ++G+ + A+ +F +M + D+  +    V   + C      
Sbjct: 62  FEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESL 121

Query: 235 ---VEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGY 291
              +EI  +I  +    ++    A+IN Y K G V  A + F  +E RD+++W +MIA  
Sbjct: 122 KDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAAC 181

Query: 292 ELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDG 351
             + +F  A  L   M +  V+PN  TL +  +A      L++G++++  +       D 
Sbjct: 182 VQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKFVYGLVSSGVMESDV 241

Query: 352 VLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRM 411
            +    + M+   G +  A  +F  +  + V  W  +I     +    +A+ LF ++ + 
Sbjct: 242 RVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQD 301

Query: 412 GMKPTAITFIGVLN 425
           G+K   ITF+ +LN
Sbjct: 302 GVKANDITFVLMLN 315



 Score = 40.8 bits (94), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 59/142 (41%), Gaps = 5/142 (3%)

Query: 414 KPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAK 473
           KP    F+ +L  CS A  V+ GRR  +  + D G E      G L+ +  + G + EA+
Sbjct: 1   KPDTAFFVALLQRCSSAKNVDHGRR-VHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQ 59

Query: 474 STIESMPMRPNFVIWMSLLSGARNHGNKD--IGEYAANNLIKVAPDTIGCYVVLSNIYAA 531
              E +  R +   W  ++      G+ D  +G +       V P  +  YV + N  A+
Sbjct: 60  QVFEILE-RKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKV-TYVAILNACAS 117

Query: 532 AGQWDKVSEVREMMKKRGFRKD 553
                   E+   + ++GF  D
Sbjct: 118 TESLKDGMEIHGQILQQGFEGD 139


>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 243/669 (36%), Positives = 381/669 (56%), Gaps = 44/669 (6%)

Query: 59  LLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFL 118
           L+ +YV      +  AR +FD+ +Q   LV + ++I  Y    +++E+L LF  + +  +
Sbjct: 199 LVDMYVK--CREIEDARFLFDK-MQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGV 255

Query: 119 LPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRR 178
           +PD   +  V+   A+LGA+ + + I   + +  F  D  + ++++ MYAK G ++  R 
Sbjct: 256 VPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESARE 315

Query: 179 VFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKC 232
           +FD M++K+++SW+ +I  Y   G+   A+ LF  M      PD+   +   L+     C
Sbjct: 316 IFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDK--ITLASLLYACINC 373

Query: 233 GKVEIAREIFYRMPN----RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMI 288
             +   R++  +       +NL+  N +++ Y     +D A  LFD M +RD ++W+ M+
Sbjct: 374 RNLTQVRQVHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWSVMV 433

Query: 289 AGYELNGRFM----------------------------EALELLETMLIGDVLPNDATLV 320
            G+   G +M                            E+L L + M    V+P+   +V
Sbjct: 434 GGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFCGNANESLVLFDKMREEGVVPDKVAMV 493

Query: 321 SALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKK 380
           + + A A L  ++K R +  YI +  F +D +LGT +I M++KCG +ESA  +F  + +K
Sbjct: 494 TVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEK 553

Query: 381 KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYF 440
            V  W+AMI   G HG   +ALDLF  M R G+ P  IT + +L ACSHAGLV +G R+F
Sbjct: 554 NVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFF 613

Query: 441 NMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGN 500
           ++M  DY +   ++HY C+VD+L R G L+EA   IESM +  +  +W + L   R H +
Sbjct: 614 SLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKD 673

Query: 501 KDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIE 560
             + E AA +L+++ P   G Y++LSNIYA AG+W+ V++ R++M +R  +K PG + IE
Sbjct: 674 VVLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIE 733

Query: 561 HRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELEN 620
                H+F VGD +HP++ EI+  L  + NKL+  G+VPDT  VL  + D++ K   L +
Sbjct: 734 VDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDV-DEELKIGILYS 792

Query: 621 HSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKN 680
           HSE+LAIAFGLI     +PIRI+KNLRVC DCH+  KL+S I  R IIVRD +RFHHFK 
Sbjct: 793 HSEKLAIAFGLIATPEHTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRDANRFHHFKE 852

Query: 681 GSCSCKDFW 689
           G+CSC D+W
Sbjct: 853 GACSCGDYW 861



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 98/296 (33%), Positives = 151/296 (51%), Gaps = 25/296 (8%)

Query: 138 IKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDG 197
           + + +Q+H      G   +  V + L+  Y+ +  +D    +FD M  +D VSW+ ++ G
Sbjct: 94  LTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGG 153

Query: 198 YVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMP-----NRNLVS 252
           + K G+       F E+                +CG    AR   Y +P      R+L +
Sbjct: 154 FAKVGDYINCFGTFRELI---------------RCG----ARPDNYTLPFVIRACRDLKN 194

Query: 253 WN-AMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGD 311
              A+++ Y+K  +++ A  LFD M+ RDL+TW  MI GY   G+  E+L L E M    
Sbjct: 195 LQMALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEG 254

Query: 312 VLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESAL 371
           V+P+   +V+ + A A L  ++K R +  YI +  F +D +LGT +I MY+KCG +ESA 
Sbjct: 255 VVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAR 314

Query: 372 TVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNAC 427
            +F  + +K V  W+AMI   G HG   +ALDLF  M   GM P  IT   +L AC
Sbjct: 315 EIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYAC 370



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 131/534 (24%), Positives = 243/534 (45%), Gaps = 71/534 (13%)

Query: 7   QHSSPIHALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDP 66
           + SS  H LQ+  P + + + L       + +Q+HA +    ++ +  ++++L+  Y   
Sbjct: 68  EESSKFHFLQRLNP-KFYISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFY--S 124

Query: 67  HINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLP 126
           +   L  A  +FD +    S V +++++  +            F +L+     PDN+TLP
Sbjct: 125 YYRALDDAYGLFDGMCVRDS-VSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLP 183

Query: 127 CVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK 186
            VI+    L                     K +  +LV MY K  EI+  R +FD M ++
Sbjct: 184 FVIRACRDL---------------------KNLQMALVDMYVKCREIEDARFLFDKMQER 222

Query: 187 DLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREIF 242
           DLV+W  +I GY + G+   ++ LF++M +     D  +   +V   +K G +  AR I 
Sbjct: 223 DLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIID 282

Query: 243 YRMPNR----NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFM 298
             +  +    +++   AMI+ Y K G V+SA E+FD ME +++I+W++MIA Y  +G+  
Sbjct: 283 DYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGR 342

Query: 299 EALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLI 358
           +AL+L   ML   +LP+  TL S L A      L + R +H+    +G + + ++   L+
Sbjct: 343 KALDLFRMMLSSGMLPDKITLASLLYACINCRNLTQVRQVHAQASVHGMLQNLIVANKLV 402

Query: 359 QMYSKCGSIESALTVFRAISKKKVGHWTAMIVG--------------------------- 391
             YS   +++ A  +F  +  +    W+ M+ G                           
Sbjct: 403 HFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNY 462

Query: 392 -LGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDY--- 447
            L   G A ++L LF+KM   G+ P  +  + V+ AC+  G ++  R      I+DY   
Sbjct: 463 TLPFCGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKAR-----TIDDYIQR 517

Query: 448 -GIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGN 500
              +  +     ++D+  + G +E A+   + M  + N + W ++++    HG 
Sbjct: 518 KKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEK-NVISWSAMIAAYGYHGQ 570


>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
 gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
          Length = 818

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 255/719 (35%), Positives = 398/719 (55%), Gaps = 70/719 (9%)

Query: 26  NILKFSSTHKETQQLHALSVKTNLIYHSGISS------RLLSLYVDPHINNLHYARSIFD 79
           ++L   S+  + +++H      N +++SG+ S       L+++Y      ++  A+ +F 
Sbjct: 115 SVLGACSSLAQGREIH------NRVFYSGLDSFQSLANALVTMYA--RFGSVGDAKRMF- 165

Query: 80  RILQHPSLVLYNLLIKCYVFNQRSHEALTLF----CDLLDRFLLPDNFTLPCVIKGAARL 135
           + LQ      +N +I  +  +     AL +F    CD+      P++ T   VI G +  
Sbjct: 166 QSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCDVK-----PNSTTYINVISGFSTP 220

Query: 136 GAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLI 195
             + EG++IH  +   GF  D  V ++L++MY K G     R VFD M  +D+VSWN +I
Sbjct: 221 EVLPEGRKIHAEIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMI 280

Query: 196 DGYVKKGEVEVAMKLFDEMP---------------------------------------D 216
             YV  G+   A++L+ ++                                        D
Sbjct: 281 GCYVLNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLD 340

Query: 217 RDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAG---DVDSACELF 273
            ++   T LV+ ++KCG +E AR++F  M NR+ V+W+ +I  Y   G   D   A ++F
Sbjct: 341 SEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVF 400

Query: 274 DDMEIRDLITWNSMIAGYELNGRFMEALELLETML-IGDVLPNDATLVSALSAVAGLAVL 332
           D +  RD I+WN+MI  Y  NG  + A+++   M     + P+  T ++ L A A L  L
Sbjct: 401 DRLGSRDTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRL 460

Query: 333 NKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGL 392
           ++ + +H+ I ++    + V+   LI MY++CGS+E A  +F A  +K V  WTAM+   
Sbjct: 461 SEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAF 520

Query: 393 GMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT 452
             +G   +ALDLF +M   G+KP  +T+  +L  C+H G +  G RYF  M   + + PT
Sbjct: 521 SQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHALAPT 580

Query: 453 IEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLI 512
            +H+  +VD+L R+G L +AK  +ESMP  P+ V WM+ L+  R HG  ++GE AA  + 
Sbjct: 581 ADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVY 640

Query: 513 KVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGD 572
           ++ P +   Y+ +SNIYAA G W+KV+ VR+ M++RG +K PG S IE  G LHEF  G 
Sbjct: 641 ELDPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFSSGG 700

Query: 573 KSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLI 632
           K HP+TDEI  +L+ +   ++AAG+VPDT  VL  +  + EKE  L  HSE++AIAFGL+
Sbjct: 701 KYHPRTDEICEELTRLHGLMRAAGYVPDTKAVLHDV-SEGEKETMLLYHSEKMAIAFGLV 759

Query: 633 NVK-SRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHF-KNGSCSCKDFW 689
           + + S  PIR+VKNLRVC+DCH+ TK ++ I  R+IIVRD +RFH F  +G CSC D+W
Sbjct: 760 SSRGSGEPIRVVKNLRVCSDCHTATKFIARIAGRDIIVRDCNRFHRFSSDGKCSCGDYW 818



 Score =  206 bits (524), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 146/510 (28%), Positives = 255/510 (50%), Gaps = 52/510 (10%)

Query: 55  ISSRLLSLYVDPHINNLHYARSIFDRI-LQHPSLVLYNLLIKCYVFNQRSHEALTLFCDL 113
           + + L+S+Y     ++L  ARS+F+ +  +  ++V +N +I  Y  N  S EAL L+  +
Sbjct: 44  VGNALISMY--GKCDSLVDARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRM 101

Query: 114 LDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEI 173
             + L  D+ T   V+   + L    +G++IH  VF  G    + + ++LV+MYA+FG +
Sbjct: 102 NLQGLGTDHVTFVSVLGACSSLA---QGREIHNRVFYSGLDSFQSLANALVTMYARFGSV 158

Query: 174 DLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP---DRDLFSWTCLVDGFS 230
              +R+F ++  +D  SWN +I  + + G+   A+++F EM      +  ++  ++ GFS
Sbjct: 159 GDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCDVKPNSTTYINVISGFS 218

Query: 231 KCGKVEIAREIFYRMP----NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNS 286
               +   R+I   +     + +LV   A+IN Y K G    A E+FD M+ RD+++WN 
Sbjct: 219 TPEVLPEGRKIHAEIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNV 278

Query: 287 MIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNG 346
           MI  Y LNG F EALEL + + +       AT VS L A + +  L +GR +HS+I++ G
Sbjct: 279 MIGCYVLNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERG 338

Query: 347 FVVDGVLGTLLIQMYSKCGSIESALTVFRAISKK-------------------------- 380
              +  + T L+ MY+KCGS+E A  VF A+  +                          
Sbjct: 339 LDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARK 398

Query: 381 ---KVG-----HWTAMIVGLGMHGMATQALDLFNKMC-RMGMKPTAITFIGVLNACSHAG 431
              ++G      W AMI     +G A  A+ +F +M    G+KP A+TFI VL AC+  G
Sbjct: 399 VFDRLGSRDTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLG 458

Query: 432 LVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSL 491
            +++  +  +  I++  +E  +     L+++  R G LEEA+    +   +   V W ++
Sbjct: 459 RLSE-VKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEK-TVVSWTAM 516

Query: 492 LSGARNHGN--KDIGEYAANNLIKVAPDTI 519
           ++    +G   + +  +   +L  V PD +
Sbjct: 517 VAAFSQYGRYAEALDLFQEMDLEGVKPDDV 546



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 127/403 (31%), Positives = 200/403 (49%), Gaps = 21/403 (5%)

Query: 120 PDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRV 179
           PDN T   V+   +  G + EG+ +H  +    F  D  V ++L+SMY K   +   R V
Sbjct: 5   PDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSV 64

Query: 180 FDAMD--DKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFS-WTCLVDGFSKCGKVE 236
           F++MD   +++VSWN +I  Y + G    A+ L+  M  + L +     V     C  + 
Sbjct: 65  FESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSLA 124

Query: 237 IAREIFYRMPNRNLVSW----NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYE 292
             REI  R+    L S+    NA++  Y + G V  A  +F  ++ RD  +WN++I  + 
Sbjct: 125 QGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHS 184

Query: 293 LNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV 352
            +G +  AL + + M   DV PN  T ++ +S  +   VL +GR +H+ IV NGF  D V
Sbjct: 185 QSGDWSGALRIFKEMKC-DVKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTDLV 243

Query: 353 LGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG 412
           + T LI MY KCGS   A  VF  + K+ +  W  MI    ++G   +AL+L+ K+   G
Sbjct: 244 VATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEG 303

Query: 413 MKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEA 472
            K T  TF+ +L ACS    +  GR   + ++ + G++  +     LV++  + G LEEA
Sbjct: 304 FKRTKATFVSILGACSSVKALAQGRLVHSHIL-ERGLDSEVAVATALVNMYAKCGSLEEA 362

Query: 473 KSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVA 515
           +    +M  R + V W +L           IG YA+N   K A
Sbjct: 363 RKVFNAMKNR-DAVAWSTL-----------IGAYASNGYGKDA 393



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 117/279 (41%), Gaps = 50/279 (17%)

Query: 311 DVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESA 370
           D  P++ T ++ L + +    + +GR +H  I  + F  D ++G  LI MY KC S+  A
Sbjct: 2   DRQPDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDA 61

Query: 371 LTVFRAIS--KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACS 428
            +VF ++   ++ V  W AMI     +G +T+AL L+ +M   G+    +TF+ VL ACS
Sbjct: 62  RSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACS 121

Query: 429 HAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMR------ 482
               +  GR   N +    G++        LV +  R G + +AK   +S+  R      
Sbjct: 122 S---LAQGREIHNRVFYS-GLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWN 177

Query: 483 ---------------------------PNFVIWMSLLSGARN-----HGNKDIGEYAANN 510
                                      PN   +++++SG         G K   E  AN 
Sbjct: 178 AVILAHSQSGDWSGALRIFKEMKCDVKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANG 237

Query: 511 LIKVAPDT-IGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548
                 DT +     L N+Y   G   +  EV + MKKR
Sbjct: 238 F-----DTDLVVATALINMYGKCGSSHEAREVFDKMKKR 271


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 240/658 (36%), Positives = 383/658 (58%), Gaps = 11/658 (1%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYV 98
           Q+H + VK  L     +S+ L++LY+     N+  AR +FD+  +  S+V +N +I  Y 
Sbjct: 215 QVHTVVVKNGLDKTIPVSNSLINLYL--KCGNVRKARILFDKT-EVKSVVTWNSMISGYA 271

Query: 99  FNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKF 158
            N    EAL +F  +   ++     +   VIK  A L  ++  +Q+H  V K GF FD+ 
Sbjct: 272 ANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQN 331

Query: 159 VLSSLVSMYAKFGEIDLGRRVFDAMD-DKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
           + ++L+  Y+K   +    R+F  +    ++VSW  +I G+++    E A+ LF EM  +
Sbjct: 332 IRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRK 391

Query: 218 DL----FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELF 273
            +    F+++ ++         E+  ++      R+     A+++ Y+K G V+ A ++F
Sbjct: 392 GVRPNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVF 451

Query: 274 DDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGL-AVL 332
             ++ +D++ W++M+AGY   G    A+++   +  G + PN+ T  S L+  A   A +
Sbjct: 452 SGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASM 511

Query: 333 NKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGL 392
            +G+  H + +K+       + + L+ MY+K G+IESA  VF+   +K +  W +MI G 
Sbjct: 512 GQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGY 571

Query: 393 GMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT 452
             HG A +ALD+F +M +  +K   +TFIGV  AC+HAGLV +G +YF++M+ D  I PT
Sbjct: 572 AQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPT 631

Query: 453 IEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLI 512
            EH  C+VD+  R G LE+A   IE+MP      IW ++L+  R H   ++G  AA  +I
Sbjct: 632 KEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKII 691

Query: 513 KVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGD 572
            + P+    YV+LSN+YA +G W + ++VR++M +R  +K+PG S IE +   + F+ GD
Sbjct: 692 AMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGD 751

Query: 573 KSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLI 632
           +SHP  D+I+ KL ++  +LK  G+ PDT+ VL  I+D+  KEA L  HSERLAIAFGLI
Sbjct: 752 RSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDE-HKEAVLAQHSERLAIAFGLI 810

Query: 633 NVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHF-KNGSCSCKDFW 689
                SP+ I+KNLRVC DCH V KL++ I  REI+VRD++RFHHF  +G CSC DFW
Sbjct: 811 ATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 127/462 (27%), Positives = 226/462 (48%), Gaps = 16/462 (3%)

Query: 50  IYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTL 109
           IY +G++   +  +     + L+ A ++FD+          +LL   +  + R+ EA  L
Sbjct: 22  IYANGVAQVRIYCFGTVSSSRLYNAHNLFDKSPGRDRESYISLLFG-FSRDGRTQEAKRL 80

Query: 110 FCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAK 169
           F ++    +  D      V+K +A L     G+Q+H    K GF  D  V +SLV  Y K
Sbjct: 81  FLNIHRLGMEMDCSIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMK 140

Query: 170 FGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCL 225
                 GR+VFD M ++++V+W  LI GY +    +  + LF  M +     + F++   
Sbjct: 141 GSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAA 200

Query: 226 VDGFSKCG----KVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDL 281
           +   ++ G     +++   +     ++ +   N++IN Y+K G+V  A  LFD  E++ +
Sbjct: 201 LGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSV 260

Query: 282 ITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSY 341
           +TWNSMI+GY  NG  +EAL +  +M +  V  ++++  S +   A L  L     +H  
Sbjct: 261 VTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCS 320

Query: 342 IVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS-KKKVGHWTAMIVGLGMHGMATQ 400
           +VK GF+ D  + T L+  YSKC ++  AL +F+ I     V  WTAMI G   +    +
Sbjct: 321 VVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEE 380

Query: 401 ALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLV 460
           A+DLF++M R G++P   T+  +L A     +++    +  ++  +Y    T+     L+
Sbjct: 381 AVDLFSEMKRKGVRPNEFTYSVILTALP---VISPSEVHAQVVKTNYERSSTVGT--ALL 435

Query: 461 DILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKD 502
           D   + G +EEA      +  + + V W ++L+G    G  +
Sbjct: 436 DAYVKLGKVEEAAKVFSGIDDK-DIVAWSAMLAGYAQTGETE 476



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 129/504 (25%), Positives = 232/504 (46%), Gaps = 26/504 (5%)

Query: 12  IHALQQHLPSRLHWNILKFSSTHKET---QQLHALSVKTNLIYHSGISSRLLSLYVDPHI 68
           IH L   +   +  ++LK S+T  +    +QLH   +K   +    + + L+  Y+    
Sbjct: 84  IHRLGMEMDCSIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKG-- 141

Query: 69  NNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCV 128
           +N    R +FD  ++  ++V +  LI  Y  N  + E LTLF  + +    P++FT    
Sbjct: 142 SNFKDGRKVFDE-MKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAA 200

Query: 129 IKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDL 188
           +   A  G    G Q+H +V K G      V +SL+++Y K G +   R +FD  + K +
Sbjct: 201 LGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSV 260

Query: 189 VSWNCLIDGYVKKGEVEVAMKLFDEMP-DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPN 247
           V+WN +I GY   G    A+ +F  M  +    S +        C  ++  R  F    +
Sbjct: 261 VTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELR--FTEQLH 318

Query: 248 RNLVSW---------NAMINGYMKAGDVDSACELFDDME-IRDLITWNSMIAGYELNGRF 297
            ++V +          A++  Y K   +  A  LF ++  + ++++W +MI+G+  N   
Sbjct: 319 CSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGK 378

Query: 298 MEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLL 357
            EA++L   M    V PN+ T    L+A   L V++    +H+ +VK  +     +GT L
Sbjct: 379 EEAVDLFSEMKRKGVRPNEFTYSVILTA---LPVISPSE-VHAQVVKTNYERSSTVGTAL 434

Query: 358 IQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA 417
           +  Y K G +E A  VF  I  K +  W+AM+ G    G    A+ +F ++ + G+KP  
Sbjct: 435 LDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNE 494

Query: 418 ITFIGVLNACSHAGL-VNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTI 476
            TF  +LN C+     +  G+++    I    ++ ++     L+ +  + G +E A+   
Sbjct: 495 FTFSSILNVCAATNASMGQGKQFHGFAIKSR-LDSSLCVSSALLTMYAKKGNIESAEEVF 553

Query: 477 ESMPMRPNFVIWMSLLSGARNHGN 500
           +    + + V W S++SG   HG 
Sbjct: 554 KRQREK-DLVSWNSMISGYAQHGQ 576


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 237/634 (37%), Positives = 373/634 (58%), Gaps = 18/634 (2%)

Query: 70  NLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVI 129
           +L  A  +F+++ +  + V + L+I   +    + EA+ LF D++     PD FTL  VI
Sbjct: 220 DLVSAFKVFEKMPERNA-VTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVI 278

Query: 130 KGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKF---GEIDLGRRVFDAMDDK 186
              A +  +  G+Q+H    + G   D+ V   L++MYAK    G +   R++FD + D 
Sbjct: 279 SACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDH 338

Query: 187 DLVSWNCLIDGYVKKGEV-EVAMKLFDEM------PDRDLFSWTCLVDGFSKCGKVEIAR 239
           ++ SW  +I GYV+KG   E A+ LF  M      P+   F+++  +   +    + I  
Sbjct: 339 NVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNH--FTFSSTLKACANLAALRIGE 396

Query: 240 EIFYRMPNRNLVS----WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNG 295
           ++F         S     N++I+ Y ++G +D A + FD +  ++LI++N++I  Y  N 
Sbjct: 397 QVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNL 456

Query: 296 RFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGT 355
              EALEL   +    +  +  T  S LS  A +  + KG  +H+ ++K+G  ++  +  
Sbjct: 457 NSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCN 516

Query: 356 LLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKP 415
            LI MYS+CG+IESA  VF  +  + V  WT++I G   HG ATQAL+LF+KM   G++P
Sbjct: 517 ALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRP 576

Query: 416 TAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKST 475
             +T+I VL+ACSH GLVN+G ++F  M  ++G+ P +EHY C+VDIL R+G L EA   
Sbjct: 577 NEVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQF 636

Query: 476 IESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQW 535
           I SMP + + ++W + L   R HGN ++G++AA  +I+  P     Y++LSN+YA+  +W
Sbjct: 637 INSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASISKW 696

Query: 536 DKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAA 595
           D+VS +R+ MK++   K+ G S +E    +H+F VGD SHP+  EI+ +L  +  K+K  
Sbjct: 697 DEVSNIRKAMKEKXLIKEAGCSWVEVENKVHKFYVGDTSHPKAAEIYDELQNLSVKIKKL 756

Query: 596 GHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSV 655
           G+VP+   VL  +E++ +KE  L  HSE++A+AFGLI+     PIR+ KNLR+C DCHS 
Sbjct: 757 GYVPNLDFVLHDVEEE-QKEKLLFQHSEKIAVAFGLISTSKMKPIRVFKNLRICGDCHSA 815

Query: 656 TKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            K +S    REIIVRD +RFHH K+G CSC ++W
Sbjct: 816 IKYISMATGREIIVRDANRFHHIKDGRCSCNEYW 849



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 127/504 (25%), Positives = 218/504 (43%), Gaps = 61/504 (12%)

Query: 100 NQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFV 159
           N R H+A++    ++ +   PD  T    +K   R  +   G  +H  + +     D   
Sbjct: 44  NGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVT 103

Query: 160 LSSLVSMYAKFGEIDLGRRVFDAM-DDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRD 218
           L+SL+S+Y+K G+ +    +F  M   +DL+SW+ ++  +        A+  F +M +  
Sbjct: 104 LNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENG 163

Query: 219 LF-SWTCLVDGFSKCGKVE---IAREIFYRMPNRNLVSWN-----AMINGYMKA-GDVDS 268
            + +  C       C   E   +   IF  +     +  +      +I+ ++K  GD+ S
Sbjct: 164 YYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVS 223

Query: 269 ACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAG 328
           A ++F+ M  R+ +TW  MI      G   EA++L   M+     P+  TL   +SA A 
Sbjct: 224 AFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACAN 283

Query: 329 LAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKC---GSIESALTVFRAISKKKVGHW 385
           + +L  G+ +HS  +++G  +D  +G  LI MY+KC   GS+ +A  +F  I    V  W
Sbjct: 284 MELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSW 343

Query: 386 TAMIVG-LGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSH--------------- 429
           TAMI G +   G   +ALDLF  M    + P   TF   L AC++               
Sbjct: 344 TAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAV 403

Query: 430 --------------------AGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYL 469
                               +G ++D R+ F+++      E  +  Y  ++D   +    
Sbjct: 404 KLGFSSVNCVANSLISMYARSGRIDDARKAFDIL-----FEKNLISYNTVIDAYAKNLNS 458

Query: 470 EEAK---STIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIK--VAPDTIGCYVV 524
           EEA    + IE   M  +   + SLLSGA + G    GE     +IK  +  +   C  +
Sbjct: 459 EEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNAL 518

Query: 525 LSNIYAAAGQWDKVSEVREMMKKR 548
           +S +Y+  G  +   +V E M+ R
Sbjct: 519 IS-MYSRCGNIESAFQVFEDMEDR 541



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 51/254 (20%), Positives = 111/254 (43%), Gaps = 17/254 (6%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +Q+HA  +K+ L  +  + + L+S+Y      N+  A  +F+  ++  +++ +  +I  +
Sbjct: 497 EQIHARVIKSGLKLNQSVCNALISMY--SRCGNIESAFQVFED-MEDRNVISWTSIITGF 553

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEG-KQIHGLVFKLGFGFD 156
             +  + +AL LF  +L+  + P+  T   V+   + +G + EG K    +  + G    
Sbjct: 554 AKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPR 613

Query: 157 KFVLSSLVSMYAKFGEIDLGRRVFDAMDDK-DLVSWNCLIDGYVKKGEVEV---AMKLFD 212
               + +V +  + G +    +  ++M  K D + W   +      G +E+   A K+  
Sbjct: 614 MEHYACIVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMII 673

Query: 213 EMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLV-----SWNAMINGYMK--AGD 265
           E    D  ++  L + ++   K +    I   M  + L+     SW  + N   K   GD
Sbjct: 674 EQEPHDPAAYILLSNLYASISKWDEVSNIRKAMKEKXLIKEAGCSWVEVENKVHKFYVGD 733

Query: 266 VD--SACELFDDME 277
                A E++D+++
Sbjct: 734 TSHPKAAEIYDELQ 747


>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 630

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 264/685 (38%), Positives = 383/685 (55%), Gaps = 72/685 (10%)

Query: 8   HSSPIHALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLY-VDP 66
           H++   + +   P +L    +  S +  E  Q+HA  ++ NL+ H       L L+    
Sbjct: 15  HATATASFRNPPPEKLAV-FIDNSHSVDEVLQIHAAILRHNLLIHPRYPVLNLKLHRAYA 73

Query: 67  HINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLP 126
               + ++ ++F + +  P L L+   I     N    +A  L+  LL   + P+ FT  
Sbjct: 74  SHGKIRHSLALFHQTID-PDLFLFTAAINTASINGLKDQAFLLYVQLLSSQINPNEFTFS 132

Query: 127 CVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK 186
            ++K  +     K GK IH  V                    KFG   LG          
Sbjct: 133 SILKSCS----TKSGKLIHTHVL-------------------KFG---LG---------- 156

Query: 187 DLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMP 246
                   +D YV  G                      LVD ++K G V  A+++F RMP
Sbjct: 157 --------LDPYVATG----------------------LVDIYAKGGDVVSAQKVFDRMP 186

Query: 247 NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLET 306
            R+LVS  AMI  Y K G+V++A  LFD M  RD+++WN MI GY  +G   +AL L + 
Sbjct: 187 ERSLVSSTAMITCYAKQGNVEAARALFDRMCERDIVSWNVMIDGYSQHGFPSDALMLFQK 246

Query: 307 MLI-GDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCG 365
           +L  G   P++ T+V+ALSA + +  L  GRW+H ++  +   ++  + T LI MYSKCG
Sbjct: 247 LLADGKPKPDEITVVAALSACSQIGALETGRWIHVFVNSSRIRLNVKVCTALIDMYSKCG 306

Query: 366 SIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRM-GMKPTAITFIGVL 424
           S+E A+ VF    +K +  W AMI G  MHG +  AL LF++M  + G++PT ITFIG L
Sbjct: 307 SLEEAVLVFNDTPRKDIVAWNAMITGYAMHGYSQDALRLFDEMQGITGLQPTDITFIGTL 366

Query: 425 NACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPN 484
            AC+HAGLVN+G + F  M  +YGI+P IEHYGCLV +L R G L+ A   I++M M  +
Sbjct: 367 QACAHAGLVNEGIQIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYEIIKNMNMEAD 426

Query: 485 FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREM 544
            V+W S+L   + HG   +G+  A  LI       G YV+LSNIYA  G ++ V++VR +
Sbjct: 427 SVLWSSVLGSCKLHGEFMLGKEIAEYLIGQNISNSGIYVLLSNIYALVGDYEGVAKVRNL 486

Query: 545 MKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQV 604
           MK++G  K+PG S+IE    +HEF  GD+ H ++ EI++ L +M  ++K+ G+VP+T  V
Sbjct: 487 MKEKGIVKEPGISTIEIDNKVHEFRAGDREHLKSKEIYTMLRKMSERIKSHGYVPNTNTV 546

Query: 605 LLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYN 664
           L  +E + EKE  L+ HSERLAIA+GLI+ K  SP++I KNLRVC+DCH+VTKL+S I  
Sbjct: 547 LHDLE-ETEKERSLQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITG 605

Query: 665 REIIVRDNSRFHHFKNGSCSCKDFW 689
           R+I++RD +RFHHF +GSCSC DFW
Sbjct: 606 RKIVMRDRNRFHHFSDGSCSCDDFW 630


>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Glycine max]
          Length = 616

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 221/467 (47%), Positives = 310/467 (66%), Gaps = 1/467 (0%)

Query: 223 TCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLI 282
           T LV  +++ G +     +F      +LV+  AM+N   K GD+D A ++FD+M  RD +
Sbjct: 151 TGLVFMYAELGCLSSCHNVFDGAVEPDLVTQTAMLNACAKCGDIDFARKMFDEMPERDHV 210

Query: 283 TWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYI 342
           TWN+MIAGY   GR  EAL++   M +  V  N+ ++V  LSA   L VL+ GRW+H+Y+
Sbjct: 211 TWNAMIAGYAQCGRSREALDVFHLMQMEGVKLNEVSMVLVLSACTHLQVLDHGRWVHAYV 270

Query: 343 VKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQAL 402
            +    +   LGT L+ MY+KCG+++ A+ VF  + ++ V  W++ I GL M+G   ++L
Sbjct: 271 ERYKVRMTVTLGTALVDMYAKCGNVDRAMQVFWGMKERNVYTWSSAIGGLAMNGFGEESL 330

Query: 403 DLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDI 462
           DLFN M R G++P  ITFI VL  CS  GLV +GR++F+ M N YGI P +EHYG +VD+
Sbjct: 331 DLFNDMKREGVQPNGITFISVLKGCSVVGLVEEGRKHFDSMRNVYGIGPQLEHYGLMVDM 390

Query: 463 LCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCY 522
             R G L+EA + I SMPMRP+   W +LL   R + NK++GE A   ++++     G Y
Sbjct: 391 YGRAGRLKEALNFINSMPMRPHVGAWSALLHACRMYKNKELGEIAQRKIVELEDKNDGAY 450

Query: 523 VVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIH 582
           V+LSNIYA    W+ VS +R+ MK +G +K PG S IE  G +HEF+VGDKSHP+ DEI 
Sbjct: 451 VLLSNIYADYKNWESVSSLRQTMKAKGVKKLPGCSVIEVDGEVHEFIVGDKSHPRYDEIE 510

Query: 583 SKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRI 642
            KL E+   L+ +G+V +T  VL  IE++ EKE  L  HSE++AIAFGLI++K   PIR+
Sbjct: 511 MKLEEISKCLRLSGYVANTNPVLFDIEEE-EKEDALSKHSEKVAIAFGLISLKGVVPIRV 569

Query: 643 VKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           V NLR+C DCH+V K++S I+NREIIVRD +RFHHFK+G CSCKD+W
Sbjct: 570 VMNLRICWDCHNVAKMISKIFNREIIVRDRNRFHHFKDGECSCKDYW 616



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 114/418 (27%), Positives = 203/418 (48%), Gaps = 53/418 (12%)

Query: 26  NILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQH- 84
           ++L   +T KE +Q+HA  V   ++ +     + ++     +  NL YA    +++L H 
Sbjct: 14  SLLNSCTTLKEMKQIHAQLVVKGILNNPHFHGQFVATIALHNTTNLDYA----NKLLNHN 69

Query: 85  --PSLVLYNLLIKCYVFNQRSHEALTLFCDLL---DRFLLPDNFTLPCVIKGAARLGAIK 139
             P+L   N +I+ Y  +    ++   + ++L   +  L PDN+T   +++  A+L A  
Sbjct: 70  NNPTLFTLNSMIRAYSKSSTPSKSFHFYANILHSNNNNLSPDNYTFTFLVRTCAQLQAHV 129

Query: 140 EGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYV 199
            G  +HG V K GF  D  V + LV MYA+ G +     VFD   + DLV+   +++   
Sbjct: 130 TGLCVHGAVIKHGFELDPHVQTGLVFMYAELGCLSSCHNVFDGAVEPDLVTQTAMLNACA 189

Query: 200 KKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR----NLVS--- 252
           K G+++ A K+FDEMP+RD  +W  ++ G+++CG+   A ++F+ M       N VS   
Sbjct: 190 KCGDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALDVFHLMQMEGVKLNEVSMVL 249

Query: 253 ---------------W-----------------NAMINGYMKAGDVDSACELFDDMEIRD 280
                          W                  A+++ Y K G+VD A ++F  M+ R+
Sbjct: 250 VLSACTHLQVLDHGRWVHAYVERYKVRMTVTLGTALVDMYAKCGNVDRAMQVFWGMKERN 309

Query: 281 LITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHS 340
           + TW+S I G  +NG   E+L+L   M    V PN  T +S L   + + ++ +GR  H 
Sbjct: 310 VYTWSSAIGGLAMNGFGEESLDLFNDMKREGVQPNGITFISVLKGCSVVGLVEEGR-KHF 368

Query: 341 YIVKNGFVVDGVLG--TLLIQMYSKCGSIESALTVFRAIS-KKKVGHWTAMIVGLGMH 395
             ++N + +   L    L++ MY + G ++ AL    ++  +  VG W+A++    M+
Sbjct: 369 DSMRNVYGIGPQLEHYGLMVDMYGRAGRLKEALNFINSMPMRPHVGAWSALLHACRMY 426



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 79/344 (22%), Positives = 141/344 (40%), Gaps = 57/344 (16%)

Query: 265 DVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGD---VLPNDATLVS 321
           ++D A +L +      L T NSMI  Y  +    ++      +L  +   + P++ T   
Sbjct: 58  NLDYANKLLNHNNNPTLFTLNSMIRAYSKSSTPSKSFHFYANILHSNNNNLSPDNYTFTF 117

Query: 322 ALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMY-------------------- 361
            +   A L     G  +H  ++K+GF +D  + T L+ MY                    
Sbjct: 118 LVRTCAQLQAHVTGLCVHGAVIKHGFELDPHVQTGLVFMYAELGCLSSCHNVFDGAVEPD 177

Query: 362 -----------SKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCR 410
                      +KCG I+ A  +F  + ++    W AMI G    G + +ALD+F+ M  
Sbjct: 178 LVTQTAMLNACAKCGDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALDVFHLMQM 237

Query: 411 MGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLE 470
            G+K   ++ + VL+AC+H  +++ G R+ +  +  Y +  T+     LVD+  + G ++
Sbjct: 238 EGVKLNEVSMVLVLSACTHLQVLDHG-RWVHAYVERYKVRMTVTLGTALVDMYAKCGNVD 296

Query: 471 EAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIK--VAPDTI-------GC 521
            A      M  R N   W S + G   +G  +      N++ +  V P+ I       GC
Sbjct: 297 RAMQVFWGMKER-NVYTWSSAIGGLAMNGFGEESLDLFNDMKREGVQPNGITFISVLKGC 355

Query: 522 YVV------------LSNIYAAAGQWDKVSEVREMMKKRGFRKD 553
            VV            + N+Y    Q +    + +M  + G  K+
Sbjct: 356 SVVGLVEEGRKHFDSMRNVYGIGPQLEHYGLMVDMYGRAGRLKE 399


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 255/730 (34%), Positives = 399/730 (54%), Gaps = 75/730 (10%)

Query: 31  SSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLY 90
           S    + ++LH L +KT     + +S+ L++ Y    + NL YA  +FD I Q P+L  +
Sbjct: 18  SQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYK--LGNLAYAHHVFDHIPQ-PNLFSW 74

Query: 91  NLLIKCY-----------VFN--------------------QRSHEALTLFCDLL-DRFL 118
           N ++  Y           +FN                        +A+ ++  +L D  +
Sbjct: 75  NTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLMLKDAAM 134

Query: 119 LPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRR 178
             +  T   ++   ++   +  G+QI+G + K GFG D FV S LV MY K G I   +R
Sbjct: 135 NLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKR 194

Query: 179 VFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIA 238
            FD M ++++V  N +I G ++ G +E + +LF  + +RD  SWT ++ G  + G    A
Sbjct: 195 YFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREA 254

Query: 239 REIFYRMP---------------------------------------NRNLVSWNAMING 259
            ++F  M                                          N+   +A+++ 
Sbjct: 255 LDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDM 314

Query: 260 YMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATL 319
           Y K   + SA  +F  M  +++I+W +M+ GY  NG   EA+++   M    V P+D TL
Sbjct: 315 YSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTL 374

Query: 320 VSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK 379
            S +S+ A LA L +G   H   + +G +    +   LI +Y KCGS E++  +F  ++ 
Sbjct: 375 GSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFTEMNI 434

Query: 380 KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRY 439
           +    WTA++ G    G A + + LF +M   G+KP  +TFIGVL+ACS AGLV  G +Y
Sbjct: 435 RDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACSRAGLVEKGLQY 494

Query: 440 FNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
           F  MI ++GI P ++H  C++D+L R G LEEA++ I +MP  P+ V W +LLS  R HG
Sbjct: 495 FESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVGWATLLSSCRVHG 554

Query: 500 NKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSI 559
           + +IG++AA++LI + P     YV+LS++YA+ G+WDKV+++R  M+ +  RK+PG S I
Sbjct: 555 DMEIGKWAADSLIALEPQNPASYVLLSSLYASKGKWDKVAQLRRGMRDKRVRKEPGYSWI 614

Query: 560 EHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELE 619
           +++G +H F   D+S P   +I+++L ++  K+   G+VPD + VL  +E + EK   L 
Sbjct: 615 KYKGKVHVFSADDQSSPFLGQIYAELEKLNYKMIEEGYVPDMSSVLHDVE-ESEKIKMLN 673

Query: 620 NHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFK 679
           +HSE+LAIAFGLI V    PIR++KNLRVC DCH+ TK +S I  REI+VRD  RFH FK
Sbjct: 674 HHSEKLAIAFGLIFVPPGLPIRVIKNLRVCGDCHNATKFISKITQREILVRDAVRFHLFK 733

Query: 680 NGSCSCKDFW 689
           +G+CSC DFW
Sbjct: 734 DGTCSCGDFW 743


>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 678

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 243/624 (38%), Positives = 358/624 (57%), Gaps = 43/624 (6%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
            R IFD I +  ++V +N++I+ YV N    +AL +F ++    + PD++T PCV+K ++
Sbjct: 90  TRHIFDEIPKK-NVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASS 148

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
               +  G QIH  V ++G   + FV + L+SMY K G                     C
Sbjct: 149 GSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCG---------------------C 187

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSW 253
           L++          A ++ D+MP RD+ SW  LV G ++ G+ + A E+   M    L   
Sbjct: 188 LVE----------ACRVLDQMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPD 237

Query: 254 NAMINGYMKAGDVDSAC--------ELFDDMEIRDLITWNSMIAGYELNGRFMEALELLE 305
              +   + A  V + C        E+F  +  + L++WN MIA Y  N    EA+++  
Sbjct: 238 AGTMASLLPA--VTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFL 295

Query: 306 TMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCG 365
            M    V P+  ++ S L A   L+ L  GR +H Y+V+     + +L   LI MY+KCG
Sbjct: 296 QMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCG 355

Query: 366 SIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN 425
            +E A  VF  +  + V  WT+MI   GM+G    A+ LF++M  +G+ P +I F+ VL+
Sbjct: 356 CLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLS 415

Query: 426 ACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNF 485
           ACSHAGL+++GR YF +M  +  I P IEH+ C+VD+L R G ++EA   I+ MPM PN 
Sbjct: 416 ACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNE 475

Query: 486 VIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMM 545
            +W +LLS  R + N  IG  AA+ L ++ P+  G YV+LSNIYA AG+W+ V+ VR +M
Sbjct: 476 RVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIYAKAGRWEDVTTVRSIM 535

Query: 546 KKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVL 605
           K +G +K PG S+ E    +H F+ GD+SHPQ+ +I+ +L     K+K AG+VP+T   L
Sbjct: 536 KTKGIKKMPGVSNFELDNRVHTFLAGDQSHPQSKQIYEELDVSVGKMKEAGYVPETDSAL 595

Query: 606 LCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNR 665
             +E++ +KE  L  HSE+LAIAF ++N    SPIRI KNLRVC DCH   KL+S I  R
Sbjct: 596 HDVEEE-DKECHLAVHSEKLAIAFAILNTAPGSPIRITKNLRVCGDCHIAAKLISKIVGR 654

Query: 666 EIIVRDNSRFHHFKNGSCSCKDFW 689
           EI +RD +RFHHF NG CSC D+W
Sbjct: 655 EITIRDTNRFHHFYNGVCSCGDYW 678



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 82/355 (23%), Positives = 156/355 (43%), Gaps = 31/355 (8%)

Query: 18  HLPSR--LHWNIL--------KFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPH 67
            +P R  + WN L        +F    +  +++  L +K +    +G  + LL    +  
Sbjct: 197 QMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPD----AGTMASLLPAVTNTC 252

Query: 68  INNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPC 127
           ++N+ + + +F + L + SLV +N++I  Y+ N    EA+ +F  + D  + PD  ++  
Sbjct: 253 LDNVSFVKEMFMK-LANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIAS 311

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD 187
           V+     L A+  G++IH  V +     +  + ++L+ MYAK G ++  R VFD M  +D
Sbjct: 312 VLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRD 371

Query: 188 LVSWNCLIDGYVKKGEVEVAMKLFDEMPD----RDLFSWTCLVDGFSKCGKVEIAREIFY 243
           +VSW  +I  Y   G+   A+ LF  M D     D  ++  ++   S  G ++  R  F 
Sbjct: 372 VVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFK 431

Query: 244 RMPNR-----NLVSWNAMINGYMKAGDVDSACELFDDMEIR-DLITWNSMIAGYELNGRF 297
            M         +  +  M++   +AG VD A      M +  +   W ++++   +    
Sbjct: 432 LMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSACRVYSNM 491

Query: 298 MEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV 352
           +  + LL    +  + P  +     LS +   A    GRW     V++     G+
Sbjct: 492 I--IGLLAADQLFQLCPEQSGYYVLLSNIYAKA----GRWEDVTTVRSIMKTKGI 540



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 89/179 (49%)

Query: 256 MINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPN 315
           ++  Y   G+  S   +FD++  ++++ +N MI  Y  N  + +AL + + M    + P+
Sbjct: 77  LMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPD 136

Query: 316 DATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFR 375
             T    L A +G   L  G  +H+ +V+ G  ++  +G  LI MY KCG +  A  V  
Sbjct: 137 HYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLD 196

Query: 376 AISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVN 434
            +  + V  W +++ G   +G    AL++  +M  +G+KP A T   +L A ++  L N
Sbjct: 197 QMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDN 255


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 240/662 (36%), Positives = 380/662 (57%), Gaps = 16/662 (2%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +++HA+ ++T        ++ L+ +Y    + ++  A  +F ++ +   +V +N  I   
Sbjct: 222 RKVHAMVIRTGYDKDVFTANALVDMY--SKLGDIRMAAVVFGKVPE-TDVVSWNAFISGC 278

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
           V +     AL L   +    L+P+ FTL  ++K  A  GA   G+QIHG + K     D 
Sbjct: 279 VLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDN 338

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
           ++   LV MYAK G +D  ++VFD +  +DLV WN LI G     +   A+ LF  M   
Sbjct: 339 YIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKE 398

Query: 218 D----------LFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVD 267
                      +   T  ++  S   +V    E    + + ++V  N +I+ Y K   ++
Sbjct: 399 GFDVNRTTLAAVLKSTASLEAISDTRQVHALAEKLGFLSDSHVV--NGLIDSYWKCDCLN 456

Query: 268 SACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVA 327
            A  +F+     D+I + SMI          +A++L   ML   + P+   L S L+A A
Sbjct: 457 YAYRVFEKHGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACA 516

Query: 328 GLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTA 387
            L+   +G+ +H++++K  F+ D   G  L+  Y+KCGSIE A   F  + +K V  W+A
Sbjct: 517 SLSAYEQGKQVHAHLIKRQFMSDVFAGNALVYTYAKCGSIEDADLAFSGLPEKGVVSWSA 576

Query: 388 MIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDY 447
           MI GL  HG   +ALD+F++M    + P  IT   VL AC+HAGLV++ +RYFN M   +
Sbjct: 577 MIGGLAQHGHGKRALDVFHRMVDEHISPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMF 636

Query: 448 GIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYA 507
           GIE T EHY C++D+L R G L++A   + SMP + N  +W +LL+ +R H + ++G  A
Sbjct: 637 GIERTEEHYACMIDLLGRAGKLDDAMELVNSMPFQTNAAVWGALLAASRVHRDPELGRLA 696

Query: 508 ANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHE 567
           A  L  + P+  G +V+L+N YA+AG WD V++VR++MK    +K+P  S +E +  +H 
Sbjct: 697 AEKLFILEPEKSGTHVLLANTYASAGMWDDVAKVRKLMKDSKVKKEPAMSWVELKDKVHT 756

Query: 568 FVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAI 627
           F+VGDKSHP+  +I++KL E+ + +  AG+VP+  +V L   D+ EKE  L +HSERLA+
Sbjct: 757 FIVGDKSHPRARDIYAKLDELGDLMTKAGYVPN-VEVDLHDVDKNEKELLLSHHSERLAV 815

Query: 628 AFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKD 687
           AF LI+  + +PIR+ KNLR+C DCH+  K +S I +REII+RD +RFHHF++G+CSC+D
Sbjct: 816 AFALISTPAGAPIRVKKNLRICRDCHAAFKFISDIVSREIIIRDINRFHHFRDGACSCRD 875

Query: 688 FW 689
           +W
Sbjct: 876 YW 877



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 131/482 (27%), Positives = 223/482 (46%), Gaps = 12/482 (2%)

Query: 27  ILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPS 86
           +LK +       QLHAL++ T L     +++ L+++Y       +  AR +FD      +
Sbjct: 109 VLKCAPDAGFGTQLHALAMATGLGGDIFVANALVAMY--GGFGFVDEARMVFDEAGCERN 166

Query: 87  LVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHG 146
            V +N L+  YV N R   A+ +F +++   + P+ F   CV+        ++ G+++H 
Sbjct: 167 TVSWNGLMSAYVKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHA 226

Query: 147 LVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEV 206
           +V + G+  D F  ++LV MY+K G+I +   VF  + + D+VSWN  I G V  G  + 
Sbjct: 227 MVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQH 286

Query: 207 AMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWN----AMIN 258
           A++L  +M    L    F+ + ++   +  G   + R+I   M   N  S N     +++
Sbjct: 287 ALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVD 346

Query: 259 GYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDAT 318
            Y K G +D A ++FD +  RDL+ WN++I+G     +  EAL L   M       N  T
Sbjct: 347 MYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTT 406

Query: 319 LVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS 378
           L + L + A L  ++  R +H+   K GF+ D  +   LI  Y KC  +  A  VF    
Sbjct: 407 LAAVLKSTASLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHG 466

Query: 379 KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR 438
              +  +T+MI  L        A+ LF +M R G+ P       +LNAC+       G++
Sbjct: 467 SYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQ 526

Query: 439 YFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNH 498
               +I    +         LV    + G +E+A      +P +   V W +++ G   H
Sbjct: 527 VHAHLIKRQFMSDVFAG-NALVYTYAKCGSIEDADLAFSGLPEK-GVVSWSAMIGGLAQH 584

Query: 499 GN 500
           G+
Sbjct: 585 GH 586



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 131/425 (30%), Positives = 211/425 (49%), Gaps = 23/425 (5%)

Query: 27  ILKFSSTHKETQ--QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQH 84
           + ++++T    Q   +HA  +K+ L   +   + LLS Y    +     AR +FD I   
Sbjct: 11  LTRYAATQSLLQGAHIHAHLLKSGLF--AVFRNHLLSFYSKCRLPG--SARRVFDEI-PD 65

Query: 85  PSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQI 144
           P  V ++ L+  Y  N    +AL  F  +    +  + F LP V+K A   G    G Q+
Sbjct: 66  PCHVSWSSLVTAYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVLKCAPDAGF---GTQL 122

Query: 145 HGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFD-AMDDKDLVSWNCLIDGYVKKGE 203
           H L    G G D FV ++LV+MY  FG +D  R VFD A  +++ VSWN L+  YVK   
Sbjct: 123 HALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKNDR 182

Query: 204 VEVAMKLFDEM------PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMP----NRNLVSW 253
              A+K+F EM      P+   F ++C+V+  +    +E  R++   +     ++++ + 
Sbjct: 183 CSHAVKVFGEMVWGGVQPNE--FGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTA 240

Query: 254 NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL 313
           NA+++ Y K GD+  A  +F  +   D+++WN+ I+G  L+G    ALELL  M    ++
Sbjct: 241 NALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLV 300

Query: 314 PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTV 373
           PN  TL S L A AG    N GR +H ++VK     D  +   L+ MY+K G ++ A  V
Sbjct: 301 PNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKV 360

Query: 374 FRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLV 433
           F  I ++ +  W A+I G        +AL LF +M + G      T   VL + +    +
Sbjct: 361 FDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAI 420

Query: 434 NDGRR 438
           +D R+
Sbjct: 421 SDTRQ 425



 Score = 99.0 bits (245), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 130/267 (48%), Gaps = 17/267 (6%)

Query: 36  ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPS--LVLYNLL 93
           +T+Q+HAL+ K   +  S + + L+  Y     + L+YA  +F++   H S  ++ +  +
Sbjct: 422 DTRQVHALAEKLGFLSDSHVVNGLIDSYWK--CDCLNYAYRVFEK---HGSYDIIAFTSM 476

Query: 94  IKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGF 153
           I          +A+ LF ++L + L PD F L  ++   A L A ++GKQ+H  + K  F
Sbjct: 477 ITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQF 536

Query: 154 GFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDE 213
             D F  ++LV  YAK G I+     F  + +K +VSW+ +I G  + G  + A+ +F  
Sbjct: 537 MSDVFAGNALVYTYAKCGSIEDADLAFSGLPEKGVVSWSAMIGGLAQHGHGKRALDVFHR 596

Query: 214 MPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMP-----NRNLVSWNAMINGYMKAG 264
           M D  +     + T ++   +  G V+ A+  F  M       R    +  MI+   +AG
Sbjct: 597 MVDEHISPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIERTEEHYACMIDLLGRAG 656

Query: 265 DVDSACELFDDMEIR-DLITWNSMIAG 290
            +D A EL + M  + +   W +++A 
Sbjct: 657 KLDDAMELVNSMPFQTNAAVWGALLAA 683


>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 886

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 238/671 (35%), Positives = 372/671 (55%), Gaps = 55/671 (8%)

Query: 59  LLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFL 118
           +L  Y   H   + +A  IF + +    +V +N++I     + R  EAL +  D+  + +
Sbjct: 231 MLVGYAKSH--GVDHALEIF-KSMPERDVVSWNMVISALSKSGRVREALDMVVDMHGKGV 287

Query: 119 LPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRR 178
            PD+ T    +   ARL +++ GKQ+H  V +     D +V S++V +YAK G     +R
Sbjct: 288 RPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGCFKEAKR 347

Query: 179 VFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDG------ 228
           VF ++ D++ VSW  LI G+++ G    +++LF++M       D F+   L+ G      
Sbjct: 348 VFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLISGCCNTMD 407

Query: 229 -----------------------------FSKCGKVEIAREIFYRMPNRNLVSWNAMING 259
                                        ++KCG ++ A  IF  M  R++VSW  MI  
Sbjct: 408 ICLGSQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDIVSWTGMITA 467

Query: 260 YMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLI-GDVLPNDAT 318
           Y + G++  A E FDDM  R++ITWN+M+  Y  +G   + L++   ML   DV+P+  T
Sbjct: 468 YSQVGNIAKAREFFDDMSTRNVITWNAMLGAYIQHGAEEDGLKMYSDMLTEKDVIPDWVT 527

Query: 319 LVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS 378
            V+     A +     G  +  + VK G ++D  +   +I MYSKCG I  A   F  +S
Sbjct: 528 YVTLFRGCADIGANKLGDQIIGHTVKVGLILDTSVVNAVITMYSKCGRISEARKAFDFLS 587

Query: 379 KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR 438
           +K +  W AMI G   HGM  QA+++F+ +   G KP  I+++ VL+ CSH+GLV +G+ 
Sbjct: 588 RKDLVSWNAMITGYSQHGMGKQAIEIFDDILNKGAKPDYISYVAVLSGCSHSGLVEEGKF 647

Query: 439 YFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNH 498
           YF+MM  D+ I P +EH+ C+VD+L R G+L EAK+ I+ MPM+P   +W +LLS  + H
Sbjct: 648 YFDMMKRDHNISPGLEHFSCMVDLLGRAGHLIEAKNLIDEMPMKPTAEVWGALLSACKTH 707

Query: 499 GNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSS 558
           GN D+ E AA +L  +     G Y++L+ +YA AG+ D  ++VR++M+ +G +K PG S 
Sbjct: 708 GNNDLAELAAKHLFDLDSPGSGGYMLLAKMYADAGKSDDSAQVRKLMRDKGIKKSPGYSW 767

Query: 559 IEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAEL 618
           +E    +H F   D SHPQ   I  KL E+  K+   G+V            + E     
Sbjct: 768 MEVNNRVHVFKAEDVSHPQVIAIREKLDELMEKIAHLGYV------------RTESPRSE 815

Query: 619 ENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHF 678
            +HSE+LA+AFG++++ +  PI I+KNLR+C+DCH+V KL+S + +RE ++RD  RFHHF
Sbjct: 816 IHHSEKLAVAFGIMSLPAWMPIHIMKNLRICDDCHTVIKLISTVTDREFVIRDGVRFHHF 875

Query: 679 KNGSCSCKDFW 689
           K GSCSC D+W
Sbjct: 876 KGGSCSCMDYW 886



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 96/376 (25%), Positives = 175/376 (46%), Gaps = 46/376 (12%)

Query: 167 YAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEV---------------------- 204
           YAK G +     +F  M  +D+ SWN ++ GY + G+                       
Sbjct: 102 YAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVSMRQTGDSLPNAFT 161

Query: 205 --------------EVAMKL------FDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYR 244
                         EVA++L      FD   D D+   T LVD   +CG ++ A + F R
Sbjct: 162 FGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDV--QTALVDMLVRCGAMDFASKQFSR 219

Query: 245 MPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELL 304
           + N  ++  N+M+ GY K+  VD A E+F  M  RD+++WN +I+    +GR  EAL+++
Sbjct: 220 IKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALSKSGRVREALDMV 279

Query: 305 ETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKC 364
             M    V P+  T  S+L+A A L+ L  G+ +H  +++N   +D  + + ++++Y+KC
Sbjct: 280 VDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKC 339

Query: 365 GSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVL 424
           G  + A  VF ++  +    WT +I G   +G  +++++LFN+M    M         ++
Sbjct: 340 GCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLI 399

Query: 425 NACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPN 484
           + C +   +  G +  ++ +   G    +     L+ +  + G L+ A+     M  R +
Sbjct: 400 SGCCNTMDICLGSQLHSLCLKS-GHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAER-D 457

Query: 485 FVIWMSLLSGARNHGN 500
            V W  +++     GN
Sbjct: 458 IVSWTGMITAYSQVGN 473


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 226/573 (39%), Positives = 342/573 (59%), Gaps = 30/573 (5%)

Query: 120 PDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRV 179
           P+ F    +I+G A  G + E    +  + + G G   F  S+L         +DLG++V
Sbjct: 105 PNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQV 164

Query: 180 FDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAR 239
                     +   LI G+                   DL+    ++D + KCG +  AR
Sbjct: 165 H---------AQTILIGGFAS-----------------DLYVGNSMIDLYVKCGFLGCAR 198

Query: 240 EIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFME 299
           ++F  M  R++VSW  +I  Y K GD++SA  LFDD+  +D++ W +M+ GY  NGR  E
Sbjct: 199 KVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKE 258

Query: 300 ALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDG--VLGTLL 357
           ALE  + M    +  ++ TL   +SA A L  +    W+     ++GF   G  V+G+ L
Sbjct: 259 ALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSAL 318

Query: 358 IQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA 417
           I MYSKCGS + A  VF  + ++ V  +++MI+G  MHG A  AL LF+ M +  ++P  
Sbjct: 319 IDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNK 378

Query: 418 ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIE 477
           +TFIG+L+ACSHAGLV  GR+ F  M   +G+ P+ +HY C+VD+L R G LEEA   ++
Sbjct: 379 VTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVK 438

Query: 478 SMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDK 537
           +MPM PN  +W +LL   R HGN DI + AAN L K+ P+ IG Y++LSNIYA+AG+W++
Sbjct: 439 TMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFKLEPNGIGNYILLSNIYASAGRWEE 498

Query: 538 VSEVREMMKKRGFRKDPGSSSIEHR-GVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAG 596
           VS++R++++++GF+K+PG S  E + G +H+F  GD +HP++ EI   L ++  +L++ G
Sbjct: 499 VSKLRKVIREKGFKKNPGCSWFEGKNGEIHDFFAGDTTHPRSSEIRQALKQLIERLRSHG 558

Query: 597 HVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVT 656
           + P+       + D  EKE  L +HSE+LA+A+GL+  ++   I+I+KN+R+C DCH+V 
Sbjct: 559 YKPNLGSAPYDLTDD-EKERILMSHSEKLALAYGLLCTEAGDTIKIMKNIRICEDCHNVM 617

Query: 657 KLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
              S I  REIIVRDN RFHHF NG+CSC +FW
Sbjct: 618 CAASEITGREIIVRDNMRFHHFHNGTCSCGNFW 650



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 121/479 (25%), Positives = 225/479 (46%), Gaps = 52/479 (10%)

Query: 1   MQTQTLQHSSPIHALQQHLPSRLHW---NILKFSSTHKETQQLHALSVKTNLIYHSGISS 57
           +QT+   +  P   LQ H    L W   +IL   +   + +Q+HA  ++  L   S + +
Sbjct: 20  LQTRGSPNFIPFPQLQ-HQRKLLEWRLMSILHDCTLFSQIKQVHAHIIRNGLSQCSYVLT 78

Query: 58  RLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRF 117
           +L+ +     +    Y   +F ++  +P+  L+  +I+ Y       E+   +  +    
Sbjct: 79  KLIRMLTKVDVPMGSYPLLVFGQV-NYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDG 137

Query: 118 LLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKL-GFGFDKFVLSSLVSMYAKFGEIDLG 176
           + P +FT   + K       +  GKQ+H     + GF  D +V +S++ +Y K G +   
Sbjct: 138 VGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCA 197

Query: 177 RRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVE 236
           R+VFD M ++D+VSW  LI  Y K G++E A  LFD++P +D+ +WT +V G+++ G+ +
Sbjct: 198 RKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPK 257

Query: 237 IAREIFYRM-----------------------------------------PNRNLVSWNA 255
            A E F +M                                         P+ N+V  +A
Sbjct: 258 EALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSA 317

Query: 256 MINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPN 315
           +I+ Y K G  D A ++F+ M+ R++ +++SMI GY ++GR   AL+L   ML  ++ PN
Sbjct: 318 LIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPN 377

Query: 316 DATLVSALSAVAGLAVLNKGRWMHSYIVK-NGFVVDGVLGTLLIQMYSKCGSIESALTVF 374
             T +  LSA +   ++ +GR + + + K  G          ++ +  + G +E AL + 
Sbjct: 378 KVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLV 437

Query: 375 RAIS-KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI-TFIGVLNACSHAG 431
           + +  +   G W A++    +HG    A    N++ +  ++P  I  +I + N  + AG
Sbjct: 438 KTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFK--LEPNGIGNYILLSNIYASAG 494



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 124/311 (39%), Gaps = 40/311 (12%)

Query: 272 LFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAV 331
           +F  +   +   W +MI GY L G   E+      M    V P   T  +   A      
Sbjct: 98  VFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALN 157

Query: 332 LNKGRWMHSY-IVKNGFVVDGVLGTLLIQMYSKC-------------------------- 364
           ++ G+ +H+  I+  GF  D  +G  +I +Y KC                          
Sbjct: 158 MDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIV 217

Query: 365 -----GSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAIT 419
                G +ESA  +F  +  K +  WTAM+ G   +G   +AL+ F KM  +GM+   +T
Sbjct: 218 AYAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVT 277

Query: 420 FIGVLNACSHAGLVNDGRRYFNMM-INDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIES 478
             GV++AC+  G V       ++   + +G    +     L+D+  + G  +EA    E 
Sbjct: 278 LAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEV 337

Query: 479 MPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIK--VAPDTIGCYVVLSNIYAAAGQWD 536
           M  R N   + S++ G   HG         ++++K  + P+     V    I +A     
Sbjct: 338 MKER-NVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNK----VTFIGILSACSHAG 392

Query: 537 KVSEVREMMKK 547
            V + R++  K
Sbjct: 393 LVEQGRQLFAK 403



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 101/223 (45%), Gaps = 12/223 (5%)

Query: 336 RWMHSYIVKNGFVVDGVLGTLLIQMYSKC----GSIESALTVFRAISKKKVGHWTAMIVG 391
           + +H++I++NG      + T LI+M +K     GS    L VF  ++      WTAMI G
Sbjct: 59  KQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSY--PLLVFGQVNYPNPFLWTAMIRG 116

Query: 392 LGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP 451
             + G+ +++ + + +M R G+ P + TF  +  AC  A  ++ G++     I   G   
Sbjct: 117 YALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFAS 176

Query: 452 TIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNL 511
            +     ++D+  + G+L  A+   + M  R + V W  L+     +G+ +    +A+ L
Sbjct: 177 DLYVGNSMIDLYVKCGFLGCARKVFDEMSER-DVVSWTELIVAYAKYGDME----SASGL 231

Query: 512 IKVAPDT-IGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKD 553
               P   +  +  +   YA  G+  +  E  + M+  G   D
Sbjct: 232 FDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETD 274


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 236/634 (37%), Positives = 373/634 (58%), Gaps = 18/634 (2%)

Query: 70  NLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVI 129
           +L  A  +F+++ +  + V + L+I   +    + EA+ LF +++     PD FTL  VI
Sbjct: 220 DLVSAFKVFEKMPERNA-VTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVI 278

Query: 130 KGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKF---GEIDLGRRVFDAMDDK 186
              A +  +  G+Q+H    + G   D+ V   L++MYAK    G +   R++FD + D 
Sbjct: 279 SACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDH 338

Query: 187 DLVSWNCLIDGYVKKGEV-EVAMKLFDEM------PDRDLFSWTCLVDGFSKCGKVEIAR 239
           ++ SW  +I GYV+KG   E A+ LF  M      P+   F+++  +   +    + I  
Sbjct: 339 NVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNH--FTFSSTLKACANLAALRIGE 396

Query: 240 EIFYRMPNRNLVS----WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNG 295
           ++F         S     N++I+ Y ++G +D A + FD +  ++LI++N++I  Y  N 
Sbjct: 397 QVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNL 456

Query: 296 RFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGT 355
              EALEL   +    +  +  T  S LS  A +  + KG  +H+ ++K+G  ++  +  
Sbjct: 457 NSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCN 516

Query: 356 LLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKP 415
            LI MYS+CG+IESA  VF  +  + V  WT++I G   HG ATQAL+LF+KM   G++P
Sbjct: 517 ALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRP 576

Query: 416 TAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKST 475
             +T+I VL+ACSH GLVN+G ++F  M  ++G+ P +EHY C+VDIL R+G L EA   
Sbjct: 577 NLVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQF 636

Query: 476 IESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQW 535
           I SMP + + ++W + L   R HGN ++G++AA  +I+  P     Y++LSN+YA+  +W
Sbjct: 637 INSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASTSKW 696

Query: 536 DKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAA 595
           D+VS +R+ MK++   K+ G S +E    +H+F VGD SHP+  EI+ +L  +  K+K  
Sbjct: 697 DEVSNIRKAMKEKNLIKEAGCSWVEVENKVHKFYVGDTSHPKAAEIYDELQNLSVKIKKL 756

Query: 596 GHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSV 655
           G+VP+   VL  +E++ +KE  L  HSE++A+AFGLI+     PIR+ KNLR+C DCHS 
Sbjct: 757 GYVPNLDFVLHDVEEE-QKEKLLFQHSEKIAVAFGLISTSKMKPIRVFKNLRICGDCHSA 815

Query: 656 TKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            K +S    REIIVRD +RFHH K+G CSC ++W
Sbjct: 816 IKYISMATGREIIVRDANRFHHIKDGRCSCNEYW 849



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 127/504 (25%), Positives = 219/504 (43%), Gaps = 61/504 (12%)

Query: 100 NQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFV 159
           N R H+A++    ++ +   PD  T    +K   R  +   G  +H  + +     D   
Sbjct: 44  NGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVT 103

Query: 160 LSSLVSMYAKFGEIDLGRRVFDAM-DDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRD 218
           L+SL+S+Y+K G+ +    +F  M   +DL+SW+ ++  +        A+  F +M +  
Sbjct: 104 LNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENG 163

Query: 219 LF-SWTCLVDGFSKCGKVE---IAREIFYRMPNRNLVSWN-----AMINGYMKA-GDVDS 268
            + +  C       C   E   +   IF  +     +  +      +I+ ++K  GD+ S
Sbjct: 164 YYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVS 223

Query: 269 ACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAG 328
           A ++F+ M  R+ +TW  MI      G   EA++L   M++    P+  TL   +SA A 
Sbjct: 224 AFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACAN 283

Query: 329 LAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKC---GSIESALTVFRAISKKKVGHW 385
           + +L  G+ +HS  +++G  +D  +G  LI MY+KC   GS+ +A  +F  I    V  W
Sbjct: 284 MELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSW 343

Query: 386 TAMIVG-LGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSH--------------- 429
           TAMI G +   G   +ALDLF  M    + P   TF   L AC++               
Sbjct: 344 TAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAV 403

Query: 430 --------------------AGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYL 469
                               +G ++D R+ F+++      E  +  Y  ++D   +    
Sbjct: 404 KLGFSSVNCVANSLISMYARSGRIDDARKAFDIL-----FEKNLISYNTVIDAYAKNLNS 458

Query: 470 EEAK---STIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIK--VAPDTIGCYVV 524
           EEA    + IE   M  +   + SLLSGA + G    GE     +IK  +  +   C  +
Sbjct: 459 EEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNAL 518

Query: 525 LSNIYAAAGQWDKVSEVREMMKKR 548
           +S +Y+  G  +   +V E M+ R
Sbjct: 519 IS-MYSRCGNIESAFQVFEDMEDR 541



 Score = 47.0 bits (110), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 52/254 (20%), Positives = 112/254 (44%), Gaps = 17/254 (6%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +Q+HA  +K+ L  +  + + L+S+Y      N+  A  +F+  ++  +++ +  +I  +
Sbjct: 497 EQIHARVIKSGLKLNQSVCNALISMY--SRCGNIESAFQVFED-MEDRNVISWTSIITGF 553

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEG-KQIHGLVFKLGFGFD 156
             +  + +AL LF  +L+  + P+  T   V+   + +G + EG K    +  + G    
Sbjct: 554 AKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPR 613

Query: 157 KFVLSSLVSMYAKFGEIDLGRRVFDAMDDK-DLVSWNCLIDGYVKKGEVEV---AMKLFD 212
               + +V +  + G +    +  ++M  K D + W   +      G +E+   A K+  
Sbjct: 614 MEHYACMVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMII 673

Query: 213 EMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLV-----SWNAMINGYMK--AGD 265
           E    D  ++  L + ++   K +    I   M  +NL+     SW  + N   K   GD
Sbjct: 674 EQEPHDPAAYILLSNLYASTSKWDEVSNIRKAMKEKNLIKEAGCSWVEVENKVHKFYVGD 733

Query: 266 VD--SACELFDDME 277
                A E++D+++
Sbjct: 734 TSHPKAAEIYDELQ 747


>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
 gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 220/472 (46%), Positives = 314/472 (66%), Gaps = 1/472 (0%)

Query: 218 DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDME 277
           +LF    +++ +  CG++  A  +F +MP R+ V+WN +I    K GD+D A   F  M 
Sbjct: 44  NLFLQNMILNLYGLCGEMGDAMLLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMP 103

Query: 278 IRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRW 337
            +++ +W SMI+G+   G+  EA++L   +    V PN+ T+VS L+A A L  L+ GR 
Sbjct: 104 NKNVRSWTSMISGFVQCGKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRI 163

Query: 338 MHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGM 397
           +H Y  K+GF  +  +   LI MY KCG +E+A  VF  + ++ V  W+AMI GL MHG 
Sbjct: 164 VHEYSTKSGFKRNVHVCNTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQ 223

Query: 398 ATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYG 457
           A +AL LF++M ++G+KP  +TFIG+L+ACSH GL+++GRR+F  M  DYG+ P IEHYG
Sbjct: 224 AEEALCLFSEMIKLGVKPNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYG 283

Query: 458 CLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPD 517
           C+VD+  R G LEEA   I SMP++PN V+W +LL G + H N D+ E A  +L ++ P 
Sbjct: 284 CVVDLFSRAGLLEEAHEFILSMPIKPNGVVWGALLGGCKVHKNIDLAEEAIKHLSELDPL 343

Query: 518 TIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQ 577
             G YVV+SNIYA A +W+  + VR++MK RG +K  G SSI   GV+HEFV GD++HPQ
Sbjct: 344 NDGYYVVISNIYAEAERWEDAARVRKLMKDRGVKKTSGWSSITVNGVVHEFVAGDQTHPQ 403

Query: 578 TDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSR 637
            ++I     ++  K+K  G+ P T+ VLL +E +KEKE  L  HSE+LA+ FGL+     
Sbjct: 404 AEDICKIWDKLLVKMKRRGYAPKTSVVLLDME-EKEKEKFLYRHSEKLAVVFGLMTTPEG 462

Query: 638 SPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           +PIRI+KNLRVC DCH+  K++SGI +REIIVRD +RFH F++G CSC+DFW
Sbjct: 463 TPIRIMKNLRVCEDCHAALKIISGIVSREIIVRDRNRFHCFRDGQCSCRDFW 514



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/319 (28%), Positives = 163/319 (51%), Gaps = 41/319 (12%)

Query: 118 LLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGR 177
           +LPD FT   V+K   +L  +  GK IHGL  KLGFG + F+ + ++++Y   GE+    
Sbjct: 6   VLPDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGEMGDAM 65

Query: 178 RVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEI 237
            +F+ M  +D V+WN +I    K+G+++ A   F  MP++++ SWT ++ GF +CGK   
Sbjct: 66  LLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNE 125

Query: 238 AREIFYRM------PN---------------------------------RNLVSWNAMIN 258
           A ++F ++      PN                                 RN+   N +I+
Sbjct: 126 AIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTLID 185

Query: 259 GYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDAT 318
            Y+K G +++A  +F +ME R +++W++MIAG  ++G+  EAL L   M+   V PN  T
Sbjct: 186 MYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVKPNGVT 245

Query: 319 LVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLG-TLLIQMYSKCGSIESALTVFRAI 377
            +  L A + + ++++GR   + +  +  V+  +     ++ ++S+ G +E A     ++
Sbjct: 246 FIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHEFILSM 305

Query: 378 SKKKVG-HWTAMIVGLGMH 395
             K  G  W A++ G  +H
Sbjct: 306 PIKPNGVVWGALLGGCKVH 324



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 102/223 (45%), Gaps = 41/223 (18%)

Query: 90  YNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVF 149
           +  +I  +V   + +EA+ LF  L D  + P+  T+  V+   A LG +  G+ +H    
Sbjct: 110 WTSMISGFVQCGKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYST 169

Query: 150 KLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMK 209
           K GF  +  V ++L+ MY K G ++  RRVF  M+++ +VSW+ +I G    G+ E A+ 
Sbjct: 170 KSGFKRNVHVCNTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALC 229

Query: 210 LFDEM------PD--------------------RDLFS--------------WTCLVDGF 229
           LF EM      P+                    R  F+              + C+VD F
Sbjct: 230 LFSEMIKLGVKPNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLF 289

Query: 230 SKCGKVEIAREIFYRMPNR-NLVSWNAMINGYMKAGDVDSACE 271
           S+ G +E A E    MP + N V W A++ G     ++D A E
Sbjct: 290 SRAGLLEEAHEFILSMPIKPNGVVWGALLGGCKVHKNIDLAEE 332



 Score = 40.8 bits (94), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 40/202 (19%), Positives = 84/202 (41%), Gaps = 34/202 (16%)

Query: 40  LHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVF 99
           +H  S K+    +  + + L+ +YV      L  AR +F   ++  ++V ++ +I     
Sbjct: 164 VHEYSTKSGFKRNVHVCNTLIDMYV--KCGCLENARRVFYE-MEERTVVSWSAMIAGLAM 220

Query: 100 NQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFV 159
           + ++ EAL LF +++   + P+  T   ++   + +G I EG++                
Sbjct: 221 HGQAEEALCLFSEMIKLGVKPNGVTFIGLLHACSHMGLIDEGRRF--------------- 265

Query: 160 LSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR-D 218
                SM A +G I              +  + C++D + + G +E A +    MP + +
Sbjct: 266 ---FASMTADYGVI------------PQIEHYGCVVDLFSRAGLLEEAHEFILSMPIKPN 310

Query: 219 LFSWTCLVDGFSKCGKVEIARE 240
              W  L+ G      +++A E
Sbjct: 311 GVVWGALLGGCKVHKNIDLAEE 332


>gi|108862088|gb|ABA96198.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 247/596 (41%), Positives = 348/596 (58%), Gaps = 20/596 (3%)

Query: 106 ALTLFCDLLDRFLLPDNFTLPCVIKGAARLG-AIKEGKQIHGLVFKLGFGFDKFVLSSLV 164
           AL L C L +    P + T P  +K A+RL   ++ G+Q+H    KL    +  VL+SL+
Sbjct: 105 ALRLHCLLPN----PSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLL 160

Query: 165 SMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGE----VEVAMKLFDEMPDRDLF 220
           ++YA+ G +   +RVFD M     VSW  LI  Y+  G+    V VA   F      D F
Sbjct: 161 TLYARCGLLHRAQRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSF 220

Query: 221 SWTCLVDGFSKCGKVE--IAREIFYRMPNRNLVSWN-----AMINGYMKAGDVDSACELF 273
           +    V   + C +V      E  +R   +  ++ +     A ++ Y+K G++  A E+F
Sbjct: 221 T---AVRVLTACARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVF 277

Query: 274 DDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLN 333
           D M  +D + W +M+ GY  NG   EAL+L   M    V P+   +  ALSA   L  L+
Sbjct: 278 DKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALD 337

Query: 334 KGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLG 393
            GR     +  + F+ + VLGT LI MY+KCGS   A  VF+ + KK +  W AMI+GLG
Sbjct: 338 LGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLG 397

Query: 394 MHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTI 453
           M G    A  L  +M + G+K    TFIG+L +C+H GL+ DGRRYF+ M   Y I P I
Sbjct: 398 MTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRI 457

Query: 454 EHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIK 513
           EHYGC+VD+L R G L+EA   I+ MPM  N VI  +LL G + H N ++ E+    LI+
Sbjct: 458 EHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAVILGALLGGCKIHRNAELAEHVLTQLIR 517

Query: 514 VAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDK 573
           + P   G YV+LSNIY+  G+W+  +++R  MK++G  K P  S +E  G +HEF VGDK
Sbjct: 518 LEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKEKGVEKVPACSWVEFEGKVHEFRVGDK 577

Query: 574 SHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLIN 633
           SHP +D+I+ KL E+  ++K  G+ P T  V+  +ED+ EKE  L +HSE+LAIAF L+ 
Sbjct: 578 SHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDE-EKEHTLVHHSEKLAIAFNLLV 636

Query: 634 VKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
                 IR+ KNLRVC+DCH+  KL+S I +REIIVRDN+RFH F++GSCSC D+W
Sbjct: 637 TGPGETIRVTKNLRVCSDCHTAIKLISRITHREIIVRDNNRFHCFRDGSCSCNDYW 692



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/343 (28%), Positives = 157/343 (45%), Gaps = 22/343 (6%)

Query: 12  IHALQQHL----PSRLHWNILKFSSTH-----KETQQLHALSVKTNLIYHSGISSRLLSL 62
           +HAL+ H     PS L + I   S++      +  +QLHA S+K     +  + + LL+L
Sbjct: 103 LHALRLHCLLPNPSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTL 162

Query: 63  YVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDN 122
           Y       LH A+ +FD  + HPS V +  LI  Y+      EA+ +  +     + PD+
Sbjct: 163 YA--RCGLLHRAQRVFDE-MPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDS 219

Query: 123 FTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDA 182
           FT   V+   AR+  +  G+ +     + G     FV ++ V +Y K GE+   R VFD 
Sbjct: 220 FTAVRVLTACARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDK 279

Query: 183 MDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIA 238
           M DKD V+W  ++ GY   G    A+ LF  M       D ++    +   ++ G +++ 
Sbjct: 280 MRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLG 339

Query: 239 REIFYRMPN-----RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYEL 293
           R+   RM +      N V   A+I+ Y K G    A  +F  M  +D+I WN+MI G  +
Sbjct: 340 RQAI-RMVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGM 398

Query: 294 NGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGR 336
            G    A  L+  M    V  ND T +  L +     ++  GR
Sbjct: 399 TGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGR 441


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 260/708 (36%), Positives = 383/708 (54%), Gaps = 60/708 (8%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +  HALS+ T  I +  + + L+++Y      +L  AR +FD  +    +V +N +I+ Y
Sbjct: 147 ESAHALSLVTGFISNVFVGNALVAMY--SRCRSLSDARKVFDE-MSVWDVVSWNSIIESY 203

Query: 98  VFNQRSHEALTLFCDLLDRF-LLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFD 156
               +   AL +F  + + F   PDN TL  V+   A LG    GKQ+H          +
Sbjct: 204 AKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQN 263

Query: 157 KFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD 216
            FV + LV MYAK G +D    VF  M  KD+VSWN ++ GY + G  E A++LF++M +
Sbjct: 264 MFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQE 323

Query: 217 R----DLFSWTCLVDGFSKCG----KVEIAREIFYRMPNRNLVSW--------------- 253
                D+ +W+  + G+++ G     + + R++       N V+                
Sbjct: 324 EKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMH 383

Query: 254 ---------------------------NAMINGYMKAGDVDSACELFDDMEI--RDLITW 284
                                      N +I+ Y K   VD+A  +FD +    RD++TW
Sbjct: 384 GKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTW 443

Query: 285 NSMIAGYELNGRFMEALELLETMLIGD--VLPNDATLVSALSAVAGLAVLNKGRWMHSYI 342
             MI GY  +G   +ALELL  M   D    PN  T+  AL A A LA L  G+ +H+Y 
Sbjct: 444 TVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYA 503

Query: 343 VKNGF-VVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQA 401
           ++N    V   +   LI MY+KCGSI  A  VF  +  K    WT+++ G GMHG   +A
Sbjct: 504 LRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEA 563

Query: 402 LDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVD 461
           L +F++M R+G K   +T + VL ACSH+G+++ G  YFN M   +G+ P  EHY CLVD
Sbjct: 564 LGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVD 623

Query: 462 ILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGC 521
           +L R G L  A   IE MPM P  V+W++ LS  R HG  ++GEYAA  + ++A +  G 
Sbjct: 624 LLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGS 683

Query: 522 YVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEI 581
           Y +LSN+YA AG+W  V+ +R +M+ +G +K PG S +E       F VGDK+HP   EI
Sbjct: 684 YTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEI 743

Query: 582 HSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIR 641
           +  L +   ++K  G+VP+T   L  ++D+ EK+  L  HSE+LA+A+G++     + IR
Sbjct: 744 YQVLLDHMQRIKDIGYVPETGFALHDVDDE-EKDDLLFEHSEKLALAYGILTTPQGAAIR 802

Query: 642 IVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           I KNLRVC DCH+    +S I + +II+RD+SRFHHFKNGSCSCK +W
Sbjct: 803 ITKNLRVCGDCHTAFTYMSRIIDHDIILRDSSRFHHFKNGSCSCKGYW 850



 Score =  228 bits (581), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 171/573 (29%), Positives = 276/573 (48%), Gaps = 74/573 (12%)

Query: 55  ISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVL-YNLLIKCYVFNQRSHEALTLFCDL 113
           ++S L+S Y+   +  L +A S+  R     + V  +N LI+ Y  N  +++ L LF  +
Sbjct: 61  LTSHLISTYIS--VGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLM 118

Query: 114 LDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEI 173
                 PDN+T P V K    + +++ G+  H L    GF  + FV ++LV+MY++   +
Sbjct: 119 HSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSL 178

Query: 174 DLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM-------PD---------- 216
              R+VFD M   D+VSWN +I+ Y K G+ +VA+++F  M       PD          
Sbjct: 179 SDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPP 238

Query: 217 -----------------------RDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSW 253
                                  +++F   CLVD ++KCG ++ A  +F  M  +++VSW
Sbjct: 239 CASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSW 298

Query: 254 NAMINGYMKAGDVDSACELFDDMEIR----DLITWNSMIAGYELNGRFMEALELLETMLI 309
           NAM+ GY + G  + A  LF+ M+      D++TW++ I+GY   G   EAL +   ML 
Sbjct: 299 NAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLS 358

Query: 310 GDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIV-------KNGFVVDGVLGTLLIQMYS 362
             + PN+ TL+S LS  A +  L  G+ +H Y +       KNG   + ++   LI MY+
Sbjct: 359 SGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYA 418

Query: 363 KCGSIESALTVFRAISKKK--VGHWTAMIVGLGMHGMATQALDLFNKM----CRMGMKPT 416
           KC  +++A  +F ++S K+  V  WT MI G   HG A +AL+L ++M    C+   +P 
Sbjct: 419 KCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQ--TRPN 476

Query: 417 AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTI 476
           A T    L AC+    +  G++     + +      +    CL+D+  + G + +A+   
Sbjct: 477 AFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVF 536

Query: 477 ESMPMRPNFVIWMSLLSGARNH--GNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAA--A 532
           ++M M  N V W SL++G   H  G + +G +     I    D +   VVL   YA   +
Sbjct: 537 DNM-MAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVL---YACSHS 592

Query: 533 GQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVL 565
           G  D+  E    MK   F   PG    EH   L
Sbjct: 593 GMIDQGMEYFNRMKTV-FGVSPGP---EHYACL 621



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 112/428 (26%), Positives = 182/428 (42%), Gaps = 74/428 (17%)

Query: 138 IKEGKQIHGLVFKLGFGFDKFVLSS-LVSMYAKFG----EIDLGRRVFDAMDDKDLVSWN 192
           I + K IH  +  L FG     L+S L+S Y   G     + L RR      D  +  WN
Sbjct: 41  ISQVKLIHQKL--LSFGILTLNLTSHLISTYISVGCLSHAVSLLRRF--PPSDAGVYHWN 96

Query: 193 CLIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKCGKVEIAR--EIFYR 244
            LI  Y   G     + LF  M      PD   F +      F  CG++   R  E  + 
Sbjct: 97  SLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFV-----FKACGEISSVRCGESAHA 151

Query: 245 MP-----NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFME 299
           +        N+   NA++  Y +   +  A ++FD+M + D+++WNS+I  Y   G+   
Sbjct: 152 LSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKV 211

Query: 300 ALELLETMLIG-DVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLI 358
           ALE+   M       P++ TLV+ L   A L   + G+ +H + V +  + +  +G  L+
Sbjct: 212 ALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLV 271

Query: 359 QMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKM---------- 408
            MY+KCG ++ A TVF  +S K V  W AM+ G    G    A+ LF KM          
Sbjct: 272 DMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVV 331

Query: 409 ---------------------CRM----GMKPTAITFIGVLNACSHAGLVNDGRRY---- 439
                                CR     G+KP  +T I VL+ C+  G +  G+      
Sbjct: 332 TWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYA 391

Query: 440 ----FNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRPNFVIWMSLLSG 494
                ++  N +G E  + +   L+D+  +   ++ A++  +S+ P   + V W  ++ G
Sbjct: 392 IKYPIDLRKNGHGDENMVINQ--LIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGG 449

Query: 495 ARNHGNKD 502
              HG+ +
Sbjct: 450 YSQHGDAN 457



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 112/465 (24%), Positives = 196/465 (42%), Gaps = 101/465 (21%)

Query: 33  THKETQQLHALSVKTNLIYHSGISSRLLSLYVD--------------------------- 65
           TH   +QLH  +V + +I +  + + L+ +Y                             
Sbjct: 244 THSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVA 303

Query: 66  --PHINNLHYARSIFDRILQHP---SLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLP 120
               I     A  +F+++ +      +V ++  I  Y      +EAL +   +L   + P
Sbjct: 304 GYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKP 363

Query: 121 DNFTLPCVIKGAARLGAIKEGKQIHGLVFKL-------GFGFDKFVLSSLVSMYAKFGEI 173
           +  TL  V+ G A +GA+  GK+IH    K        G G +  V++ L+ MYAK  ++
Sbjct: 364 NEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKV 423

Query: 174 DLGRRVFDAMD--DKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL------FSWTCL 225
           D  R +FD++   ++D+V+W  +I GY + G+   A++L  EM + D       F+ +C 
Sbjct: 424 DTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCA 483

Query: 226 VDGFSKCGKVEIAREIF-YRMPNRN----LVSWNAMINGYMKAGDVDSACELFDDMEIRD 280
           +   +    + I ++I  Y + N+     L   N +I+ Y K G +  A  +FD+M  ++
Sbjct: 484 LVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKN 543

Query: 281 LITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHS 340
            +TW S++ GY ++G   EAL + + M                                 
Sbjct: 544 EVTWTSLMTGYGMHGYGEEALGIFDEMR-------------------------------- 571

Query: 341 YIVKNGFVVDGVLGTLLIQMY--SKCGSIESALTVFRAISKKKVG------HWTAMIVGL 392
              + GF +DGV  TLL+ +Y  S  G I+  +  F  + K   G      H+  ++  L
Sbjct: 572 ---RIGFKLDGV--TLLVVLYACSHSGMIDQGMEYFNRM-KTVFGVSPGPEHYACLVDLL 625

Query: 393 GMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGR 437
           G  G    AL L  +   M M+P  + ++  L+ C   G V  G 
Sbjct: 626 GRAGRLNAALRLIEE---MPMEPPPVVWVAFLSCCRIHGKVELGE 667


>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
          Length = 616

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 235/591 (39%), Positives = 339/591 (57%), Gaps = 41/591 (6%)

Query: 140 EGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVF-DAMDDKDLVSWNCLIDGY 198
           E KQIH  + K G   D + ++  +S             VF +  D  D   WN +I G 
Sbjct: 26  ELKQIHARMLKSGLLQDPYAMTKFLSFCLSSSFSSYAHDVFFNGFDRPDTFLWNLMIRGL 85

Query: 199 VKKGEVEVAMKLFDEM------------P---------------------------DRDL 219
               + + ++ L+  M            P                             D+
Sbjct: 86  SCSDQPDRSLLLYHRMLCCSAPHNAYTFPFLLKACSNLSAFQETTQIHAHITKFGYGHDI 145

Query: 220 FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDM-EI 278
           ++   L++ ++  G  + A  +F R+   + VSWN++I GY+KAG++D A  LF  M E 
Sbjct: 146 YAVNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNSVIKGYVKAGEMDMALTLFRKMPEK 205

Query: 279 RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWM 338
            + I+W +MI+GY   G   EAL+L   M   +V P++ +L SALSA + L  L +G+W+
Sbjct: 206 NNAISWTTMISGYVQAGMNKEALQLFHEMQNSNVPPDNVSLASALSACSQLGALEQGKWI 265

Query: 339 HSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMA 398
           HSY  K    +D VL  +LI MY+KCG +E AL VF+ +  K V  WTA+I G   HG+ 
Sbjct: 266 HSYANKTRTRIDSVLCCVLIDMYAKCGEMEEALGVFKNMKTKSVQVWTALISGYAYHGLG 325

Query: 399 TQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGC 458
            +A+  F +M  MG+KP AITF  VL ACS+ GLV +G+  FN +  DY ++PTIEHYGC
Sbjct: 326 REAISKFLEMQNMGVKPNAITFTAVLTACSYTGLVEEGKSVFNTIERDYNLKPTIEHYGC 385

Query: 459 LVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDT 518
           +VD+L R G L EA   I+ MP++PN VIW SLL   + H N ++GE     LI++  + 
Sbjct: 386 MVDLLGRAGLLNEANRFIQKMPLKPNAVIWGSLLKACQIHKNIELGEKIGEILIEMDSNH 445

Query: 519 IGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQT 578
            G YV ++NI+A   +WDK +E R +M+++G  K PG S+I   G  HEF+ GD+SH + 
Sbjct: 446 GGRYVHMANIHAMGKKWDKAAETRRLMREQGVVKVPGCSAISLEGTTHEFLAGDRSHAEI 505

Query: 579 DEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRS 638
            EI +K   +R KL+  G+VP+   +LL + D +EKEA +  HSE+LAI +GL+  K  +
Sbjct: 506 QEIRTKWRFVRRKLEENGYVPELEDMLLDLVDDEEKEAIVHQHSEKLAITYGLMKTKPGT 565

Query: 639 PIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            IRI+KNLRVC DCH V  L+S IY R+I++RD +RFHHFK+G CSC D+W
Sbjct: 566 TIRIMKNLRVCKDCHKVMNLISKIYKRDIVMRDRTRFHHFKDGKCSCGDYW 616



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 111/446 (24%), Positives = 192/446 (43%), Gaps = 85/446 (19%)

Query: 28  LKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSL 87
           L+   T  E +Q+HA  +K+ L+      ++ LS  +    +   YA  +F      P  
Sbjct: 18  LQKCPTEVELKQIHARMLKSGLLQDPYAMTKFLSFCLS--SSFSSYAHDVFFNGFDRPDT 75

Query: 88  VLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGL 147
            L+NL+I+    + +   +L L+  +L      + +T P ++K  + L A +E  QIH  
Sbjct: 76  FLWNLMIRGLSCSDQPDRSLLLYHRMLCCSAPHNAYTFPFLLKACSNLSAFQETTQIHAH 135

Query: 148 VFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVA 207
           + K G+G D + ++SL++ YA  G       +FD + + D VSWN +I GYVK GE+++A
Sbjct: 136 ITKFGYGHDIYAVNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNSVIKGYVKAGEMDMA 195

Query: 208 MKLFDEMPDR-DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWN------------ 254
           + LF +MP++ +  SWT ++ G+ + G  + A ++F+ M N N+   N            
Sbjct: 196 LTLFRKMPEKNNAISWTTMISGYVQAGMNKEALQLFHEMQNSNVPPDNVSLASALSACSQ 255

Query: 255 ---------------------------AMINGYMKAGDVDSACELFDDMEIRDLITWNSM 287
                                       +I+ Y K G+++ A  +F +M+ + +  W ++
Sbjct: 256 LGALEQGKWIHSYANKTRTRIDSVLCCVLIDMYAKCGEMEEALGVFKNMKTKSVQVWTAL 315

Query: 288 IAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGF 347
           I+GY  +G   EA+     M    V PN  T  + L+A                      
Sbjct: 316 ISGYAYHGLGREAISKFLEMQNMGVKPNAITFTAVLTAC--------------------- 354

Query: 348 VVDGVLGTLLIQMYSKCGSIESALTVFRAIS-----KKKVGHWTAMIVGLGMHGMATQAL 402
                         S  G +E   +VF  I      K  + H+  M+  LG  G+  +A 
Sbjct: 355 --------------SYTGLVEEGKSVFNTIERDYNLKPTIEHYGCMVDLLGRAGLLNEAN 400

Query: 403 DLFNKMCRMGMKPTAITFIGVLNACS 428
               K   M +KP A+ +  +L AC 
Sbjct: 401 RFIQK---MPLKPNAVIWGSLLKACQ 423


>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
          Length = 698

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 243/692 (35%), Positives = 371/692 (53%), Gaps = 80/692 (11%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           AR +F  + +  + V + +++       R  EA+    D+      P  FTL  V+   A
Sbjct: 11  ARGVFAEMPERDA-VSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCA 69

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAK------------------------ 169
              A   G+++H  V KLG G    V +S+++MY K                        
Sbjct: 70  VTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNA 129

Query: 170 -------FGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM-------P 215
                   G +DL   +F++M D+ +VSWN +I GY + G    A+KLF  M       P
Sbjct: 130 MVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAP 189

Query: 216 DRDLFSWT-----------------------------------CLVDGFSKCGKVEIARE 240
           D   F+ T                                    L+  ++K G VE AR 
Sbjct: 190 DE--FTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARR 247

Query: 241 IFYRM--PNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFM 298
           I  +    + N++S+ A++ GY+K GD++SA E+F  M  RD++ W +MI GYE NGR  
Sbjct: 248 IMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRND 307

Query: 299 EALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLI 358
           EA++L  +M+     PN  TL + LS  A LA L+ G+ +H   +++       +   +I
Sbjct: 308 EAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAII 367

Query: 359 QMYSKCGSIESALTVFRAIS-KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA 417
            MY++ GS   A  +F  +  +K+   WT+MIV L  HG   +A+ LF +M R G++P  
Sbjct: 368 TMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDR 427

Query: 418 ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIE 477
           IT++GVL+ACSHAG VN+G+RY++ + N++ I P + HY C+VD+L R G   EA+  I 
Sbjct: 428 ITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIR 487

Query: 478 SMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDK 537
            MP+ P+ + W SLLS  R H N ++ E AA  L+ + P+  G Y  ++N+Y+A G+W  
Sbjct: 488 RMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSD 547

Query: 538 VSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGH 597
            + + +  K++  RK+ G S    R  +H F   D  HPQ D +++  + M  ++K AG 
Sbjct: 548 AARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMWEEIKGAGF 607

Query: 598 VPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTK 657
           VPD   VL  ++D+  KE  L  HSE+LAIAFGLI+   ++ +R++KNLRVCNDCH+  K
Sbjct: 608 VPDLQSVLHDVDDEL-KEELLSRHSEKLAIAFGLISTPEKTTLRVMKNLRVCNDCHAAIK 666

Query: 658 LLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            +S + +REIIVRD +RFHHF++G CSCKD+W
Sbjct: 667 AISKVTDREIIVRDATRFHHFRDGLCSCKDYW 698



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 119/436 (27%), Positives = 191/436 (43%), Gaps = 76/436 (17%)

Query: 166 MYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMK-LFDEMPD-------- 216
           M+AK G +   R VF  M ++D VSW  ++ G  + G    A+K L D   D        
Sbjct: 1   MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 60

Query: 217 -----------------RDLFSW-------TC------LVDGFSKCGKVEIAREIFYRMP 246
                            R + S+       +C      +++ + KCG  E A  +F RMP
Sbjct: 61  LTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMP 120

Query: 247 NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLET 306
            R++ SWNAM++     G +D A  LF+ M  R +++WN+MIAGY  NG   +AL+L   
Sbjct: 121 VRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSR 180

Query: 307 ML-IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCG 365
           ML    + P++ T+ S LSA A L  +  G+ +H+YI++     +  +   LI  Y+K G
Sbjct: 181 MLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSG 240

Query: 366 SI---------------------------------ESALTVFRAISKKKVGHWTAMIVGL 392
           S+                                 ESA  +F  ++ + V  WTAMIVG 
Sbjct: 241 SVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGY 300

Query: 393 GMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT 452
             +G   +A+DLF  M   G +P + T   VL+ C+    ++ G++     I    +E +
Sbjct: 301 EQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSL-LEQS 359

Query: 453 IEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKD--IGEYAANN 510
                 ++ +  R+G    A+   + +  R   + W S++     HG  +  +G +    
Sbjct: 360 SSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEML 419

Query: 511 LIKVAPDTIGCYVVLS 526
              V PD I    VLS
Sbjct: 420 RAGVEPDRITYVGVLS 435


>gi|125551253|gb|EAY96962.1| hypothetical protein OsI_18881 [Oryza sativa Indica Group]
          Length = 822

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 235/632 (37%), Positives = 365/632 (57%), Gaps = 24/632 (3%)

Query: 70  NLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVI 129
           +L  AR +FD +++  ++V++ LLI  YV  + + EA+ LF D L+    PD +T+  +I
Sbjct: 203 DLASARKVFDGLIEK-TVVVWTLLISRYVQGECAEEAVELFLDFLEDGFEPDRYTMSSMI 261

Query: 130 KGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAK--FGE-IDLGRRVFDAMDDK 186
                LG+++ G Q+H L  ++G   D  V   LV MYAK   G+ +D   +VF+ M   
Sbjct: 262 SACTELGSVRLGLQLHSLALRMGLASDACVSCGLVDMYAKSNIGQAMDYANKVFERMPKN 321

Query: 187 DLVSWNCLIDGYVKKGEVE-VAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREI 241
           D++SW  LI GYV+ G  E   M LF EM +  +     +++ ++   +     +  R++
Sbjct: 322 DVISWTALISGYVQSGVQENKVMALFGEMLNESIKPNHITYSSILKSCASISDHDSGRQV 381

Query: 242 FYRMPNRNLVSW----NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRF 297
              +   N  S     NA+++ Y ++G ++ A  +F+ +  R +I   +    + L+ R 
Sbjct: 382 HAHVIKSNQASAHTVGNALVSMYAESGCMEEARRVFNQLYERSMIPCITEGRDFPLDHRI 441

Query: 298 MEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLL 357
           +            DV  + +T  S +SA A + +L KG+ +H+  +K GF  D  +   L
Sbjct: 442 VRM----------DVGISSSTFASLISAAASVGMLTKGQQLHAMSLKAGFGSDRFVSNSL 491

Query: 358 IQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA 417
           + MYS+CG +E A   F  +  + V  WT+MI GL  HG A +AL LF+ M   G+KP  
Sbjct: 492 VSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPND 551

Query: 418 ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIE 477
           +T+I VL+ACSH GLV +G+ YF  M  D+G+ P +EHY C+VD+L R+G ++EA   I 
Sbjct: 552 VTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGIVKEALEFIN 611

Query: 478 SMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDK 537
            MP++ + ++W +LL   R+H N ++GE  A N++++ P     YV+LSN+YA AG WD+
Sbjct: 612 EMPLKADALVWKTLLGACRSHDNIEVGEITAKNVVELEPRDPAPYVLLSNLYADAGLWDE 671

Query: 538 VSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGH 597
           V+ +R  M+     K+ G S +E     HEF  GD SHP+  +I+ KL  +  ++K  G+
Sbjct: 672 VARIRSAMRDNNLNKETGLSWMEVENTTHEFRAGDTSHPRAQDIYGKLDTLVRQIKGMGY 731

Query: 598 VPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTK 657
           VPDT+ VL  + D+  KE  L  HSE++A+AFGLI   +  PIRI KNLRVC DCHS  K
Sbjct: 732 VPDTSIVLHDMSDEL-KEQYLLQHSEKIAVAFGLITTSAPKPIRIFKNLRVCADCHSAIK 790

Query: 658 LLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            +S    REII+RD++RFH  K+G CSC ++W
Sbjct: 791 YMSKATRREIILRDSNRFHRMKDGECSCGEYW 822



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 88/364 (24%), Positives = 165/364 (45%), Gaps = 19/364 (5%)

Query: 136 GAIKEGKQIHGLVFKLGF-GFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD-KDLVSWNC 193
           G ++ G+ +H  + +      D  V +SL+++Y++ G +   R VFD M   +D+VSW  
Sbjct: 62  GDLRLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTA 121

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDRDLF--SWTCLVDGFS------KCGKVEIAREIFYRM 245
           +     + G    ++ L  EM +  L   ++T      +       C    +   + ++M
Sbjct: 122 MASCLARNGAERGSLLLIGEMLESGLLPNAYTLCAAAHACFPHELYCLVGGVVLGLVHKM 181

Query: 246 P--NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALEL 303
                ++   +A+I+   + GD+ SA ++FD +  + ++ W  +I+ Y       EA+EL
Sbjct: 182 GLWGTDVAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEL 241

Query: 304 LETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSK 363
               L     P+  T+ S +SA   L  +  G  +HS  ++ G   D  +   L+ MY+K
Sbjct: 242 FLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGLASDACVSCGLVDMYAK 301

Query: 364 CG---SIESALTVFRAISKKKVGHWTAMIVGLGMHGMA-TQALDLFNKMCRMGMKPTAIT 419
                +++ A  VF  + K  V  WTA+I G    G+   + + LF +M    +KP  IT
Sbjct: 302 SNIGQAMDYANKVFERMPKNDVISWTALISGYVQSGVQENKVMALFGEMLNESIKPNHIT 361

Query: 420 FIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYG-CLVDILCRTGYLEEAKSTIES 478
           +  +L +C+     + GR+    +I     + +    G  LV +   +G +EEA+     
Sbjct: 362 YSSILKSCASISDHDSGRQVHAHVIKSN--QASAHTVGNALVSMYAESGCMEEARRVFNQ 419

Query: 479 MPMR 482
           +  R
Sbjct: 420 LYER 423



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/274 (24%), Positives = 131/274 (47%), Gaps = 33/274 (12%)

Query: 32  STHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYN 91
           S H   +Q+HA  +K+N      + + L+S+Y +     +  AR +F+++ +        
Sbjct: 373 SDHDSGRQVHAHVIKSNQASAHTVGNALVSMYAES--GCMEEARRVFNQLYERS------ 424

Query: 92  LLIKCYVFNQR---SHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLV 148
            +I C    +     H  + +   +        + T   +I  AA +G + +G+Q+H + 
Sbjct: 425 -MIPCITEGRDFPLDHRIVRMDVGI-------SSSTFASLISAAASVGMLTKGQQLHAMS 476

Query: 149 FKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAM 208
            K GFG D+FV +SLVSMY++ G ++   R F+ + D++++SW  +I G  K G  E A+
Sbjct: 477 LKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERAL 536

Query: 209 KLFDEM------PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRN-----LVSWNAMI 257
            LF +M      P+    ++  ++   S  G V   +E F  M   +     +  +  M+
Sbjct: 537 SLFHDMILTGVKPND--VTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMV 594

Query: 258 NGYMKAGDVDSACELFDDMEIR-DLITWNSMIAG 290
           +   ++G V  A E  ++M ++ D + W +++  
Sbjct: 595 DLLARSGIVKEALEFINEMPLKADALVWKTLLGA 628



 Score = 47.0 bits (110), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 106/247 (42%), Gaps = 27/247 (10%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           QQLHA+S+K        +S+ L+S+Y       L  A   F+  L+  +++ +  +I   
Sbjct: 470 QQLHAMSLKAGFGSDRFVSNSLVSMY--SRCGYLEDACRSFNE-LKDRNVISWTSMISGL 526

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQI-------HGLVFK 150
             +  +  AL+LF D++   + P++ T   V+   + +G ++EGK+        HGL+ +
Sbjct: 527 AKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPR 586

Query: 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK-DLVSWNCLIDGYVKKGEVEVA-- 207
           +         + +V + A+ G +       + M  K D + W  L+        +EV   
Sbjct: 587 MEH------YACMVDLLARSGIVKEALEFINEMPLKADALVWKTLLGACRSHDNIEVGEI 640

Query: 208 -MKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNL-----VSWNAMINGY- 260
             K   E+  RD   +  L + ++  G  +    I   M + NL     +SW  + N   
Sbjct: 641 TAKNVVELEPRDPAPYVLLSNLYADAGLWDEVARIRSAMRDNNLNKETGLSWMEVENTTH 700

Query: 261 -MKAGDV 266
             +AGD 
Sbjct: 701 EFRAGDT 707


>gi|115483184|ref|NP_001065185.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|78708963|gb|ABB47938.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113639794|dbj|BAF27099.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|125575555|gb|EAZ16839.1| hypothetical protein OsJ_32311 [Oryza sativa Japonica Group]
 gi|215704329|dbj|BAG93763.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 681

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 230/578 (39%), Positives = 350/578 (60%), Gaps = 10/578 (1%)

Query: 120 PDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRV 179
           PD+ T    +   ARLG ++ G+ +    F  G+  D FV SSL+ +YA++G +    +V
Sbjct: 106 PDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVKV 165

Query: 180 FDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKV 235
           F  M  +D V+W+ ++ G+V  G+   A++++  M +     D      ++   +    V
Sbjct: 166 FVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNV 225

Query: 236 EIAREI---FYRMPNR-NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGY 291
            +   +     R   R ++V+  ++++ Y K G +D AC +F  M  R+ ++W++MI+G+
Sbjct: 226 RMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGF 285

Query: 292 ELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDG 351
             NG+  EAL L   M    + P+   LVSAL A + +  L  GR +H +IV+  F  + 
Sbjct: 286 AQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRR-FDFNC 344

Query: 352 VLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRM 411
           +LGT  I MYSKCGS+ SA  +F  IS + +  W AMI   G HG    AL LF +M   
Sbjct: 345 ILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNET 404

Query: 412 GMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEE 471
           GM+P   TF  +L+A SH+GLV +G+ +F  M+N + I P  +HY CLVD+L R+G +EE
Sbjct: 405 GMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVEE 464

Query: 472 AKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAA 531
           A   + SM   P   IW++LLSG  N+   ++GE  A+N++++ PD +G   ++SN+YAA
Sbjct: 465 ASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYAA 524

Query: 532 AGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNK 591
             +WDKV +VR++MK  G +K PG SSIE RG  H FV+ D+SHPQ +EI SK++++  +
Sbjct: 525 TKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHVFVMEDQSHPQREEIVSKVAKLDLE 584

Query: 592 LKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCND 651
           ++  G++P T  V   +E++  KE +L  HSERLAIAFGL+N    + + I+KNLRVC D
Sbjct: 585 MRKMGYIPRTEFVYHDLEEEV-KEQQLSYHSERLAIAFGLLNTGPGTRLVIIKNLRVCGD 643

Query: 652 CHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           CH   K +S I +REI+VRD  RFHHFK+G CSC+D+W
Sbjct: 644 CHDAIKYISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681


>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 226/547 (41%), Positives = 329/547 (60%), Gaps = 41/547 (7%)

Query: 183 MDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDR------------------- 217
           +D  ++ SWN +I    + G+   A++ F  M      P+R                   
Sbjct: 36  VDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSG 95

Query: 218 --------------DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKA 263
                         DLF  + LVD +SKCG++  AR +F  + +RN+VSW +MI GY++ 
Sbjct: 96  RQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQN 155

Query: 264 GDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLI-GDVLPNDATLVSA 322
            D   A  +FD M  RD+I+WNS+IA Y  NG   E++E+   M+  G++  N  TL + 
Sbjct: 156 DDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAV 215

Query: 323 LSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKV 382
           L A A       G+ +H  ++K G   +  +GT +I MY KCG +E A   F  + +K V
Sbjct: 216 LLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNV 275

Query: 383 GHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNM 442
             W+AM+ G GMHG A +AL++F +M   G+KP  ITF+ VL ACSHAGL+ +G  +F  
Sbjct: 276 KSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKA 335

Query: 443 MINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKD 502
           M +++ +EP +EHYGC+VD+L R GYL+EA   I+ M +RP+FV+W +LL   R H N D
Sbjct: 336 MSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVD 395

Query: 503 IGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHR 562
           +GE +A  L ++ P   G YV+LSNIYA AG+W+ V  +R +MK  G  K PG S ++ +
Sbjct: 396 LGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVDIK 455

Query: 563 GVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHS 622
           G +H F+VGD+ HPQ ++I+  L ++  KL+  G+VPD T VL  +   +EKE  L  HS
Sbjct: 456 GRVHVFLVGDREHPQHEKIYEYLEKLSMKLQEVGYVPDMTSVLHDV-GHEEKEMVLRVHS 514

Query: 623 ERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGS 682
           E+LA+AFG++N    + I I+KNLRVC DCH+  K +S I +REI+VRD+ RFHHF++G 
Sbjct: 515 EKLAVAFGIMNTVPGTTIHIIKNLRVCGDCHTAIKFISKIVDREIVVRDSKRFHHFRDGL 574

Query: 683 CSCKDFW 689
           CSC D+W
Sbjct: 575 CSCGDYW 581



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 105/392 (26%), Positives = 176/392 (44%), Gaps = 73/392 (18%)

Query: 76  SIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARL 135
           ++F++ +   ++  +N +I     +  S EAL  F  +    L P+  T PC IK  + L
Sbjct: 30  TLFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSAL 89

Query: 136 GAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLI 195
             +  G+Q H      GF  D FV S+LV MY+K GE+   R +FD +  +++VSW  +I
Sbjct: 90  LDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMI 149

Query: 196 DGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNA 255
            GYV+  +   A+++FD M +RD+ SW  ++  +++ G    + EIF+RM     +++NA
Sbjct: 150 TGYVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNA 209

Query: 256 ----------------------------------------MINGYMKAGDVDSACELFDD 275
                                                   +I+ Y K G V+ A + FD 
Sbjct: 210 VTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDR 269

Query: 276 MEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKG 335
           M  +++ +W++M+AGY ++G   EALE+   M +  V PN  T VS L+A +   +L +G
Sbjct: 270 MREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEG 329

Query: 336 RWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMH 395
            W     + + F V+                               V H+  M+  LG  
Sbjct: 330 -WHWFKAMSHEFDVE-----------------------------PGVEHYGCMVDLLGRA 359

Query: 396 GMATQALDLFNKMCRMGMKPTAITFIGVLNAC 427
           G   +A DL      M ++P  + +  +L AC
Sbjct: 360 GYLKEAFDLIKG---MKLRPDFVVWGALLGAC 388



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 75/306 (24%), Positives = 136/306 (44%), Gaps = 49/306 (16%)

Query: 27  ILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPS 86
           +L   S  +  QQ      + +L     +SS L+ +Y       L  AR++FD I  H +
Sbjct: 89  LLDLHSGRQAHQQALIFGFEPDLF----VSSALVDMY--SKCGELRDARTLFDEI-SHRN 141

Query: 87  LVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDN------------------------ 122
           +V +  +I  YV N  +H AL +F  + +R ++  N                        
Sbjct: 142 IVSWTSMITGYVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVK 201

Query: 123 --------FTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEID 174
                    TL  V+   A  G+ + GK IH  V K+G   + FV +S++ MY K G+++
Sbjct: 202 DGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVE 261

Query: 175 LGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP----DRDLFSWTCLVDGFS 230
           + R+ FD M +K++ SW+ ++ GY   G  + A+++F EM       +  ++  ++   S
Sbjct: 262 MARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACS 321

Query: 231 KCGKVEIAREIFYRMPNRNLVS-----WNAMINGYMKAGDVDSACELFDDMEIR-DLITW 284
             G +E     F  M +   V      +  M++   +AG +  A +L   M++R D + W
Sbjct: 322 HAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVW 381

Query: 285 NSMIAG 290
            +++  
Sbjct: 382 GALLGA 387


>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 689

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 241/627 (38%), Positives = 353/627 (56%), Gaps = 49/627 (7%)

Query: 109 LFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYA 168
           L   +L  F  P ++    + +   R   IK G+Q H  +   G   + F+ + +V+MYA
Sbjct: 66  LLQPILQHFPHPSSYAP--IFQFLTRHNFIKLGQQAHAQIVLHGLQPNAFLAAKMVAMYA 123

Query: 169 KFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKG---------EVEVAMKLFDEMPDR-- 217
             G++D    VFD +D+   + +N +I  Y + G         E    M     + D   
Sbjct: 124 SSGDLDSAVVVFDRIDNPSSLLYNSIIRAYTRHGXXXXXXXXLEAYARMHFLGLLGDNFT 183

Query: 218 -------------------------------DLFSWTCLVDGFSKCGKVEIAREIFYRMP 246
                                          D +    L+D + KCG +  AR++F +M 
Sbjct: 184 LPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMI 243

Query: 247 NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLET 306
            R++ SWNA+I GYMK G++  A +LF+ ME R++++W +MI+GY  NG   +AL L + 
Sbjct: 244 VRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDE 303

Query: 307 MLI--GDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKC 364
           ML    ++ PN  T+VS L A A  A L +GR +H +    G  ++  + T L  MY+KC
Sbjct: 304 MLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKC 363

Query: 365 GSIESALTVFRAISK--KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIG 422
            S+  A   F  I++  K +  W  MI     HG   +A+ +F  M R G++P A+TF+G
Sbjct: 364 YSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMG 423

Query: 423 VLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMR 482
           +L+ CSH+GL++ G  +FN M   + +EP +EHY C+VD+L R G L EAK  I  MPM+
Sbjct: 424 LLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKELISQMPMQ 483

Query: 483 PNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVR 542
               +W +LL+  R+H N +I E AA  L  + PD  G YV+LSN+YA AG W++V ++R
Sbjct: 484 AGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVLLSNLYAEAGMWEEVKKLR 543

Query: 543 EMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTT 602
            ++K +G +K PG S IE  G  H F+  DKSHPQ  EI+  L  +  K+K AG++PDT+
Sbjct: 544 ALLKYQGMKKSPGCSWIEINGKSHLFMGADKSHPQAKEIYKFLEALPEKIKMAGYIPDTS 603

Query: 603 QVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGI 662
            VL  I ++ EKE  L  HSE+LAIAFGL+N +    +R+ KNLR+C DCH+ TK +S I
Sbjct: 604 FVLHDISEE-EKEYNLTTHSEKLAIAFGLLNTRPGVVLRVTKNLRICGDCHAATKFISKI 662

Query: 663 YNREIIVRDNSRFHHFKNGSCSCKDFW 689
           Y REIIVRD +RFH FK+GSCSC D+W
Sbjct: 663 YEREIIVRDLNRFHCFKDGSCSCGDYW 689



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 141/516 (27%), Positives = 226/516 (43%), Gaps = 96/516 (18%)

Query: 12  IHALQQHLPSRLHWN-ILKFSSTH---KETQQLHALSVKTNLIYHSGISSRLLSLYVDPH 67
           +  + QH P    +  I +F + H   K  QQ HA  V   L  ++ ++++++++Y    
Sbjct: 67  LQPILQHFPHPSSYAPIFQFLTRHNFIKLGQQAHAQIVLHGLQPNAFLAAKMVAMYASS- 125

Query: 68  INNLHYARSIFDRILQHPSLVLYNLLIKCYV---FNQRSHEALTLFCDLLDRFLLPDNFT 124
             +L  A  +FDRI  +PS +LYN +I+ Y            L  +  +    LL DNFT
Sbjct: 126 -GDLDSAVVVFDRI-DNPSSLLYNSIIRAYTRHGXXXXXXXXLEAYARMHFLGLLGDNFT 183

Query: 125 LPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD 184
           LP V+K  A L  +  G+ +HG   ++G   D +V +SL+ MY K G I   R++FD M 
Sbjct: 184 LPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMI 243

Query: 185 DKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYR 244
            +D+ SWN LI GY+K+GE+ VA  LF+ M  R++ SWT ++ G+++ G  E A  +F  
Sbjct: 244 VRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDE 303

Query: 245 M--------PN---------------------------------RNLVSWNAMINGYMKA 263
           M        PN                                  N     A+   Y K 
Sbjct: 304 MLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKC 363

Query: 264 GDVDSACELFDDMEI--RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVS 321
             +  A   FD +    ++LI WN+MI  Y  +G  +EA+ + E ML   V P+  T + 
Sbjct: 364 YSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMG 423

Query: 322 ALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKK 381
            LS  +           HS ++  G           +  ++  G+I S         + +
Sbjct: 424 LLSGCS-----------HSGLIDAG-----------LNHFNDMGTIHSV--------EPR 453

Query: 382 VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNAC-SHAGLVN---DGR 437
           V H+  ++  LG  G   +A +L ++   M M+     +  +L AC SH  L       R
Sbjct: 454 VEHYACVVDLLGRAGRLVEAKELISQ---MPMQAGPSVWGALLAACRSHRNLEIAELAAR 510

Query: 438 RYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAK 473
           R F +  ++ G      +Y  L ++    G  EE K
Sbjct: 511 RLFVLEPDNSG------NYVLLSNLYAEAGMWEEVK 540


>gi|115486938|ref|NP_001065956.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|113648463|dbj|BAF28975.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|125578262|gb|EAZ19408.1| hypothetical protein OsJ_34963 [Oryza sativa Japonica Group]
          Length = 645

 Score =  444 bits (1141), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 247/596 (41%), Positives = 348/596 (58%), Gaps = 20/596 (3%)

Query: 106 ALTLFCDLLDRFLLPDNFTLPCVIKGAARLG-AIKEGKQIHGLVFKLGFGFDKFVLSSLV 164
           AL L C L +    P + T P  +K A+RL   ++ G+Q+H    KL    +  VL+SL+
Sbjct: 58  ALRLHCLLPN----PSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLL 113

Query: 165 SMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGE----VEVAMKLFDEMPDRDLF 220
           ++YA+ G +   +RVFD M     VSW  LI  Y+  G+    V VA   F      D F
Sbjct: 114 TLYARCGLLHRAQRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSF 173

Query: 221 SWTCLVDGFSKCGKVE--IAREIFYRMPNRNLVSWN-----AMINGYMKAGDVDSACELF 273
           +    V   + C +V      E  +R   +  ++ +     A ++ Y+K G++  A E+F
Sbjct: 174 T---AVRVLTACARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVF 230

Query: 274 DDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLN 333
           D M  +D + W +M+ GY  NG   EAL+L   M    V P+   +  ALSA   L  L+
Sbjct: 231 DKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALD 290

Query: 334 KGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLG 393
            GR     +  + F+ + VLGT LI MY+KCGS   A  VF+ + KK +  W AMI+GLG
Sbjct: 291 LGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLG 350

Query: 394 MHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTI 453
           M G    A  L  +M + G+K    TFIG+L +C+H GL+ DGRRYF+ M   Y I P I
Sbjct: 351 MTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRI 410

Query: 454 EHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIK 513
           EHYGC+VD+L R G L+EA   I+ MPM  N VI  +LL G + H N ++ E+    LI+
Sbjct: 411 EHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAVILGALLGGCKIHRNAELAEHVLTQLIR 470

Query: 514 VAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDK 573
           + P   G YV+LSNIY+  G+W+  +++R  MK++G  K P  S +E  G +HEF VGDK
Sbjct: 471 LEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKEKGVEKVPACSWVEFEGKVHEFRVGDK 530

Query: 574 SHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLIN 633
           SHP +D+I+ KL E+  ++K  G+ P T  V+  +ED+ EKE  L +HSE+LAIAF L+ 
Sbjct: 531 SHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDE-EKEHTLVHHSEKLAIAFNLLV 589

Query: 634 VKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
                 IR+ KNLRVC+DCH+  KL+S I +REIIVRDN+RFH F++GSCSC D+W
Sbjct: 590 TGPGETIRVTKNLRVCSDCHTAIKLISRITHREIIVRDNNRFHCFRDGSCSCNDYW 645



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/343 (28%), Positives = 157/343 (45%), Gaps = 22/343 (6%)

Query: 12  IHALQQHL----PSRLHWNILKFSSTH-----KETQQLHALSVKTNLIYHSGISSRLLSL 62
           +HAL+ H     PS L + I   S++      +  +QLHA S+K     +  + + LL+L
Sbjct: 56  LHALRLHCLLPNPSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTL 115

Query: 63  YVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDN 122
           Y       LH A+ +FD  + HPS V +  LI  Y+      EA+ +  +     + PD+
Sbjct: 116 YA--RCGLLHRAQRVFDE-MPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDS 172

Query: 123 FTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDA 182
           FT   V+   AR+  +  G+ +     + G     FV ++ V +Y K GE+   R VFD 
Sbjct: 173 FTAVRVLTACARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDK 232

Query: 183 MDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIA 238
           M DKD V+W  ++ GY   G    A+ LF  M       D ++    +   ++ G +++ 
Sbjct: 233 MRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLG 292

Query: 239 REIFYRMPN-----RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYEL 293
           R+   RM +      N V   A+I+ Y K G    A  +F  M  +D+I WN+MI G  +
Sbjct: 293 RQAI-RMVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGM 351

Query: 294 NGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGR 336
            G    A  L+  M    V  ND T +  L +     ++  GR
Sbjct: 352 TGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGR 394


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 254/726 (34%), Positives = 392/726 (53%), Gaps = 59/726 (8%)

Query: 11  PIHALQQHLPSRLHWNILKFSSTH-----KETQQLHALSVKTNLIYHSGISSRLLSLYVD 65
           PI  +QQ       WN  K SS +     +E  QL  L   T +  +  I + L+S    
Sbjct: 51  PIQDVQQ-------WN-QKLSSANSPYPLQEAVQLFYLMRHTRIRLNQFIFASLIS--AA 100

Query: 66  PHINNLHYARSIFDRILQH---PSLVLYNLLIKCYVFNQRSHEALTLF------------ 110
             + + HY  SI   + ++     +++ N  +  Y+  Q        F            
Sbjct: 101 ASLGDNHYGESIHACVCKYGFESDILISNAFVTMYMKTQSVENGWQFFKAMMIENLASRN 160

Query: 111 -----------CDLLDRFLL--------PDNFTLPCVIKGAARLGAIKEGKQIHGLVFKL 151
                      CD   R L+        P+ +T   ++K  A  G + EGK IHG V K 
Sbjct: 161 NLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKS 220

Query: 152 GFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLF 211
           G   D  + +SLV++YAK G  +   +VF  + ++D+VSW  LI G+V +G     +++F
Sbjct: 221 GINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEG-YGSGLRIF 279

Query: 212 DEMP----DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNL----VSWNAMINGYMKA 263
           ++M     + +++++  ++   S    V++ +++  ++   +L        A+++ Y K 
Sbjct: 280 NQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKN 339

Query: 264 GDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSAL 323
             ++ A  +F+ +  RDL  W  ++AGY  +G+  +A++    M    V PN+ TL S+L
Sbjct: 340 RFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSL 399

Query: 324 SAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVG 383
           S  + +A L+ GR +HS  +K G   D  + + L+ MY+KCG +E A  VF  +  +   
Sbjct: 400 SGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTV 459

Query: 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMM 443
            W  +I G   HG   +AL  F  M   G  P  +TFIGVL+ACSH GL+ +G+++FN +
Sbjct: 460 SWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSL 519

Query: 444 INDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDI 503
              YGI PTIEHY C+VDIL R G   E +S IE M +  N +IW ++L   + HGN + 
Sbjct: 520 SKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEF 579

Query: 504 GEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRG 563
           GE AA  L ++ P+    Y++LSN++AA G WD V+ VR +M  RG +K+PG S +E  G
Sbjct: 580 GERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNG 639

Query: 564 VLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSE 623
            +H F+  D SHP+  EIH KL ++  KL + G+ P+T  VL  + D +EK+  L  HSE
Sbjct: 640 QVHVFLSHDGSHPKIREIHLKLQDLHQKLMSVGYTPNTDHVLHNVSD-REKQELLFYHSE 698

Query: 624 RLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSC 683
           RLA+AF L++  +R  IRI KNLR+C DCH   K +S I N+E++VRD + FHHFKNGSC
Sbjct: 699 RLALAFALLSTSTRKTIRIFKNLRICGDCHDFMKSISEITNQELVVRDINCFHHFKNGSC 758

Query: 684 SCKDFW 689
           SC++FW
Sbjct: 759 SCQNFW 764



 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 103/387 (26%), Positives = 178/387 (45%), Gaps = 16/387 (4%)

Query: 142 KQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKK 201
           K+I   V K G   D  + SSLV++Y K   +   R+V + M  +D+  WN  +      
Sbjct: 9   KKIIFRVIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSP 68

Query: 202 GEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIF-----YRMPNRNLVS 252
             ++ A++LF  M    +    F +  L+   +  G       I      Y   +  L+S
Sbjct: 69  YPLQEAVQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILIS 128

Query: 253 WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDV 312
            NA +  YMK   V++  + F  M I +L + N++++G+       +   +L  +L+   
Sbjct: 129 -NAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGF 187

Query: 313 LPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALT 372
            PN  T +S L   A    LN+G+ +H  ++K+G   D  L   L+ +Y+KCGS   A  
Sbjct: 188 EPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACK 247

Query: 373 VFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGL 432
           VF  I ++ V  WTA+I G    G  +  L +FN+M   G  P   TFI +L +CS    
Sbjct: 248 VFGEIPERDVVSWTALITGFVAEGYGS-GLRIFNQMLAEGFNPNMYTFISILRSCSSLSD 306

Query: 433 VNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLL 492
           V+ G++    ++ +  ++        LVD+  +  +LE+A++    +  R  F  W  ++
Sbjct: 307 VDLGKQVHAQIVKN-SLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFA-WTVIV 364

Query: 493 SGARNHGNKDIGEYAANNLIKVAPDTI 519
           +G    G    GE A    I++  + +
Sbjct: 365 AGYAQDGQ---GEKAVKCFIQMQREGV 388



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 122/264 (46%), Gaps = 10/264 (3%)

Query: 237 IAREIFYRM------PNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAG 290
           I ++I +R+      P+ +L  W++++N Y+K   +  A ++ ++M I+D+  WN  ++ 
Sbjct: 7   ILKKIIFRVIKNGICPDSHL--WSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSS 64

Query: 291 YELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVD 350
                   EA++L   M    +  N     S +SA A L   + G  +H+ + K GF  D
Sbjct: 65  ANSPYPLQEAVQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESD 124

Query: 351 GVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCR 410
            ++    + MY K  S+E+    F+A+  + +     ++ G        Q   +  ++  
Sbjct: 125 ILISNAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLV 184

Query: 411 MGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLE 470
            G +P   TFI +L  C+  G +N+G+     +I   GI P    +  LV++  + G   
Sbjct: 185 EGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKS-GINPDSHLWNSLVNVYAKCGSAN 243

Query: 471 EAKSTIESMPMRPNFVIWMSLLSG 494
            A      +P R + V W +L++G
Sbjct: 244 YACKVFGEIPER-DVVSWTALITG 266


>gi|12039323|gb|AAG46111.1|AC073166_9 hypothetical protein [Oryza sativa Japonica Group]
          Length = 787

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 254/678 (37%), Positives = 390/678 (57%), Gaps = 14/678 (2%)

Query: 20  PSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFD 79
           P RL  +    S++ +   +LHAL + ++   H+ ISS L + Y      +L  A S   
Sbjct: 10  PRRLLSSSAAASASARTLARLHALLIVSSSASHTLISS-LAAAYA--RAGDLAAAESTLT 66

Query: 80  RILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIK 139
                 S+  +N +I  +        AL +F   L     PD+ T    +   ARLG ++
Sbjct: 67  ATAASSSIAAWNAIIAAHSRRGSPASALRVF-RALPPAARPDSTTFTLALSACARLGDLR 125

Query: 140 EGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYV 199
            G+ +    F  G+  D FV SSL+ +YA++G +    +VF  M  +D V+W+ ++ G+V
Sbjct: 126 GGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFV 185

Query: 200 KKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREI---FYRMPNR-NLV 251
             G+   A++++  M +     D      ++   +    V +   +     R   R ++V
Sbjct: 186 SAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVV 245

Query: 252 SWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGD 311
           +  ++++ Y K G +D AC +F  M  R+ ++W++MI+G+  NG+  EAL L   M    
Sbjct: 246 TATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASG 305

Query: 312 VLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESAL 371
           + P+   LVSAL A + +  L  GR +H +IV+  F  + +LGT  I MYSKCGS+ SA 
Sbjct: 306 IQPDSGALVSALLACSNIGFLKLGRSVHGFIVRR-FDFNCILGTAAIDMYSKCGSLASAQ 364

Query: 372 TVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAG 431
            +F  IS + +  W AMI   G HG    AL LF +M   GM+P   TF  +L+A SH+G
Sbjct: 365 MLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSG 424

Query: 432 LVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSL 491
           LV +G+ +F  M+N + I P  +HY CLVD+L R+G +EEA   + SM   P   IW++L
Sbjct: 425 LVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVAL 484

Query: 492 LSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFR 551
           LSG  N+   ++GE  A+N++++ PD +G   ++SN+YAA  +WDKV +VR++MK  G +
Sbjct: 485 LSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYAATKKWDKVRQVRKLMKDSGSK 544

Query: 552 KDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQ 611
           K PG SSIE RG  H FV+ D+SHPQ +EI SK++++  +++  G++P T  V   +E++
Sbjct: 545 KMPGCSSIEIRGTRHVFVMEDQSHPQREEIVSKVAKLDLEMRKMGYIPRTEFVYHDLEEE 604

Query: 612 KEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRD 671
             KE +L  HSERLAIAFGL+N    + + I+KNLRVC DCH   K +S I +REI+VRD
Sbjct: 605 V-KEQQLSYHSERLAIAFGLLNTGPGTRLVIIKNLRVCGDCHDAIKYISKIADREIVVRD 663

Query: 672 NSRFHHFKNGSCSCKDFW 689
             RFHHFK+G CSC+D+W
Sbjct: 664 AKRFHHFKDGVCSCRDYW 681


>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 889

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 229/644 (35%), Positives = 366/644 (56%), Gaps = 54/644 (8%)

Query: 87  LVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHG 146
           +V +N+++     + R+ EAL++  D+ +R +  D+ T    +   A+L ++  GKQ+H 
Sbjct: 259 VVSWNMMVSALSQSGRAREALSVAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHA 318

Query: 147 LVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEV 206
            V +     D +V S++V +YAK G     RRVF ++ D++ VSW  LI G+++ G    
Sbjct: 319 QVIRSLPCIDPYVASAMVELYAKCGCFKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSE 378

Query: 207 AMKLFDEMPDR----DLFSWTCLVDG---------------------------------- 228
           +++LF++M       D F+   ++ G                                  
Sbjct: 379 SLELFNQMRAELMTVDQFALATIISGCSNRMDMCLARQLHSLSLKSGHTRAVVISNSLIS 438

Query: 229 -FSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSM 287
            ++KCG ++ A  IF  M  R++VSW  M+  Y + G++  A E FD M  R++ITWN+M
Sbjct: 439 MYAKCGNLQNAESIFSSMEERDIVSWTGMLTAYSQVGNIGKAREFFDGMSTRNVITWNAM 498

Query: 288 IAGYELNGRFMEALELLETMLI-GDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNG 346
           +  Y  +G   + L++   ML   DV+P+  T V+     A +     G  +  + VK G
Sbjct: 499 LGAYIQHGAEEDGLKMYSAMLTEKDVIPDWVTYVTLFRGCADMGANKLGDQITGHTVKVG 558

Query: 347 FVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFN 406
            ++D  +   +I MYSKCG I  A  +F  +S+K +  W AMI G   HGM  QA+++F+
Sbjct: 559 LILDTSVMNAVITMYSKCGRISEARKIFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFD 618

Query: 407 KMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRT 466
            M + G KP  I+++ VL++CSH+GLV +G+ YF+M+  D+ + P +EH+ C+VD+L R 
Sbjct: 619 DMLKKGAKPDYISYVAVLSSCSHSGLVQEGKFYFDMLKRDHNVSPGLEHFSCMVDLLARA 678

Query: 467 GYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKV-APDTIGCYVVL 525
           G L EAK+ I+ MPM+P   +W +LLS  + HGN ++ E AA +L  + +PD+ G Y++L
Sbjct: 679 GNLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNELAELAAKHLFDLDSPDS-GGYMLL 737

Query: 526 SNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKL 585
           + IYA AG+    ++VR++M+ +G +K+PG S +E +  +H F   D SHPQ   I  KL
Sbjct: 738 AKIYADAGKSVDSAQVRKLMRDKGIKKNPGYSWMEVKNKVHVFKAEDVSHPQVIAIREKL 797

Query: 586 SEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKN 645
            E+  K+   G+V            + E      +HSE+LA+AFG++N+ +  PI I+KN
Sbjct: 798 DELMEKIAQLGYV------------RTESLRSEIHHSEKLAVAFGIMNLPAWMPIHIMKN 845

Query: 646 LRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           LR+C DCH+V KL+S +  RE ++RD  RFHHFK GSCSC D+W
Sbjct: 846 LRICGDCHTVIKLISTVTGREFVIRDAVRFHHFKGGSCSCGDYW 889



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 127/537 (23%), Positives = 226/537 (42%), Gaps = 83/537 (15%)

Query: 68  INNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRF-LLPDNFTLP 126
           + +L  A  +F R+ +   +  +N L+  Y  + R  +A+  F  +      LP+ FT  
Sbjct: 108 LGSLSDAEELFGRMPRR-DVTSWNTLMSGYYQSGRFLDAMESFVSMRRSGDSLPNAFTFG 166

Query: 127 CVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK 186
           C +K    LG  +   Q+ GL+ K GF  D  V + +V M+ + G +D   + F  ++  
Sbjct: 167 CAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCGAVDFASKQFSQIERP 226

Query: 187 DLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMP 246
            +   N ++ GY K   V+ A++LF+ MP+RD+ SW  +V   S+ G+   A  +   M 
Sbjct: 227 TVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMH 286

Query: 247 NRNL-------------------VSW--------------------NAMINGYMKAGDVD 267
           NR +                   + W                    +AM+  Y K G   
Sbjct: 287 NRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGCFK 346

Query: 268 SACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVA 327
            A  +F  +  R+ ++W  +I G+   G F E+LEL   M    +  +   L + +S  +
Sbjct: 347 EARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISGCS 406

Query: 328 GLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTA 387
               +   R +HS  +K+G     V+   LI MY+KCG++++A ++F ++ ++ +  WT 
Sbjct: 407 NRMDMCLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVSWTG 466

Query: 388 MIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDY 447
           M+      G   +A + F+ M         IT+  +L A    G   DG + ++ M+ + 
Sbjct: 467 MLTAYSQVGNIGKAREFFDGMS----TRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEK 522

Query: 448 GIEPTIEHY-----GC------------------------------LVDILCRTGYLEEA 472
            + P    Y     GC                              ++ +  + G + EA
Sbjct: 523 DVIPDWVTYVTLFRGCADMGANKLGDQITGHTVKVGLILDTSVMNAVITMYSKCGRISEA 582

Query: 473 KSTIESMPMRPNFVIWMSLLSGARNHG-NKDIGEYAANNLIKVA-PDTIGCYVVLSN 527
           +   + +  R + V W ++++G   HG  K   E   + L K A PD I    VLS+
Sbjct: 583 RKIFDFLS-RKDLVSWNAMITGYSQHGMGKQAIEIFDDMLKKGAKPDYISYVAVLSS 638



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 99/374 (26%), Positives = 174/374 (46%), Gaps = 42/374 (11%)

Query: 167 YAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLF-------DEMPDRDL 219
           YAK G +     +F  M  +D+ SWN L+ GY + G    AM+ F       D +P+   
Sbjct: 105 YAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMRRSGDSLPNAFT 164

Query: 220 FS----------W-----------------------TCLVDGFSKCGKVEIAREIFYRMP 246
           F           W                       T +VD F +CG V+ A + F ++ 
Sbjct: 165 FGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCGAVDFASKQFSQIE 224

Query: 247 NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLET 306
              +   N+M+ GY K+  VD A ELF+ M  RD+++WN M++    +GR  EAL +   
Sbjct: 225 RPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVD 284

Query: 307 MLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGS 366
           M    V  +  T  S+L+A A L+ L  G+ +H+ ++++   +D  + + ++++Y+KCG 
Sbjct: 285 MHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGC 344

Query: 367 IESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNA 426
            + A  VF ++  +    WT +I G   +G  +++L+LFN+M    M         +++ 
Sbjct: 345 FKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISG 404

Query: 427 CSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFV 486
           CS+   +   R+  ++ +   G    +     L+ +  + G L+ A+S   SM  R + V
Sbjct: 405 CSNRMDMCLARQLHSLSLKS-GHTRAVVISNSLISMYAKCGNLQNAESIFSSMEER-DIV 462

Query: 487 IWMSLLSGARNHGN 500
            W  +L+     GN
Sbjct: 463 SWTGMLTAYSQVGN 476



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 100/434 (23%), Positives = 186/434 (42%), Gaps = 76/434 (17%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +QLHA  +++       ++S ++ LY          AR +F   L+  + V + +LI  +
Sbjct: 314 KQLHAQVIRSLPCIDPYVASAMVELYAK--CGCFKEARRVFSS-LRDRNTVSWTVLIGGF 370

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
           +      E+L LF  +    +  D F L  +I G +    +   +Q+H L  K G     
Sbjct: 371 LQYGCFSESLELFNQMRAELMTVDQFALATIISGCSNRMDMCLARQLHSLSLKSGHTRAV 430

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
            + +SL+SMYAK G +     +F +M+++D+VSW  ++  Y + G +  A + FD M  R
Sbjct: 431 VISNSLISMYAKCGNLQNAESIFSSMEERDIVSWTGMLTAYSQVGNIGKAREFFDGMSTR 490

Query: 218 DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLV--SW---------------------- 253
           ++ +W  ++  + + G  E   +++  M     V   W                      
Sbjct: 491 NVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIPDWVTYVTLFRGCADMGANKLGDQI 550

Query: 254 ----------------NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRF 297
                           NA+I  Y K G +  A ++FD +  +DL++WN+MI GY  +G  
Sbjct: 551 TGHTVKVGLILDTSVMNAVITMYSKCGRISEARKIFDFLSRKDLVSWNAMITGYSQHGMG 610

Query: 298 MEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLL 357
            +A+E+ + ML     P+  + V+ LS+ +   ++ +G++    + ++  V  G      
Sbjct: 611 KQAIEIFDDMLKKGAKPDYISYVAVLSSCSHSGLVQEGKFYFDMLKRDHNVSPG------ 664

Query: 358 IQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA 417
                                   + H++ M+  L   G   +A +L ++   M MKPTA
Sbjct: 665 ------------------------LEHFSCMVDLLARAGNLIEAKNLIDE---MPMKPTA 697

Query: 418 ITFIGVLNACSHAG 431
             +  +L+AC   G
Sbjct: 698 EVWGALLSACKTHG 711



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 148/300 (49%), Gaps = 43/300 (14%)

Query: 37  TQQLHALSVKTNLIYHSGISSRLLSLYVD-----------------------------PH 67
            +QLH+LS+K+       IS+ L+S+Y                                 
Sbjct: 414 ARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVSWTGMLTAYSQ 473

Query: 68  INNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL-DRFLLPDNFTLP 126
           + N+  AR  FD  +   +++ +N ++  Y+ +    + L ++  +L ++ ++PD  T  
Sbjct: 474 VGNIGKAREFFDG-MSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIPDWVTYV 532

Query: 127 CVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK 186
            + +G A +GA K G QI G   K+G   D  V++++++MY+K G I   R++FD +  K
Sbjct: 533 TLFRGCADMGANKLGDQITGHTVKVGLILDTSVMNAVITMYSKCGRISEARKIFDFLSRK 592

Query: 187 DLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREIF 242
           DLVSWN +I GY + G  + A+++FD+M  +    D  S+  ++   S  G V+  +  +
Sbjct: 593 DLVSWNAMITGYSQHGMGKQAIEIFDDMLKKGAKPDYISYVAVLSSCSHSGLVQEGK-FY 651

Query: 243 YRMPNRN------LVSWNAMINGYMKAGDVDSACELFDDMEIRDLI-TWNSMIAGYELNG 295
           + M  R+      L  ++ M++   +AG++  A  L D+M ++     W ++++  + +G
Sbjct: 652 FDMLKRDHNVSPGLEHFSCMVDLLARAGNLIEAKNLIDEMPMKPTAEVWGALLSACKTHG 711


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 245/657 (37%), Positives = 381/657 (57%), Gaps = 10/657 (1%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYV 98
           Q+H + +K+ L     + + ++++Y    +  +  A+++FD  +++ + V +N +I  +V
Sbjct: 214 QVHTMVIKSGLDSTIFVGNSMVNMYSKSLM--VSDAKAVFDS-MENRNAVSWNSMIAGFV 270

Query: 99  FNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKF 158
            N    EA  LF  +    +         VIK  A +  +   KQ+H  V K G  FD  
Sbjct: 271 TNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLN 330

Query: 159 VLSSLVSMYAKFGEIDLGRRVFDAMDD-KDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
           + ++L+  Y+K  EID   ++F  M   +++VSW  +I GYV+ G  + AM LF +M   
Sbjct: 331 IKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRRE 390

Query: 218 DL----FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELF 273
            +    F+++ ++   +     +I   +       +     A+ + Y K GD + A ++F
Sbjct: 391 GVRPNHFTYSTILTANAAVSPSQIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIF 450

Query: 274 DDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAG-LAVL 332
           + ++ +D++ W++M++GY   G    A+++   +    V PN+ T  S L+A A   A +
Sbjct: 451 ELIDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASV 510

Query: 333 NKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGL 392
            +G+  HS  +K+GF     + + L+ MY+K G+IESA  VF+    + +  W +MI G 
Sbjct: 511 EQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGY 570

Query: 393 GMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT 452
             HG   ++L +F +M    ++   ITFIGV++AC+HAGLVN+G+RYF++M+ DY I PT
Sbjct: 571 AQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPT 630

Query: 453 IEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLI 512
           +EHY C+VD+  R G LE+A   I  MP      IW +LL+  R H N  +GE AA  LI
Sbjct: 631 MEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLI 690

Query: 513 KVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGD 572
            + P     YV+LSNIYA AG W + ++VR++M  +  +K+ G S IE +     F+ GD
Sbjct: 691 SLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTFSFMAGD 750

Query: 573 KSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLI 632
            SHPQ+D I+ KL E+  +LK AG+ PDT  VL  +E++  KE  L  HSERLAIAFGLI
Sbjct: 751 LSHPQSDRIYLKLEELSIRLKDAGYYPDTKYVLHDVEEE-HKEVILSQHSERLAIAFGLI 809

Query: 633 NVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
                +PI+IVKNLRVC DCH+V KL+S I  R+I+VRD++RFHHFK GSCSC D+W
Sbjct: 810 ATPPGTPIQIVKNLRVCGDCHTVIKLISKIEGRDIVVRDSNRFHHFKGGSCSCGDYW 866



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 135/437 (30%), Positives = 214/437 (48%), Gaps = 16/437 (3%)

Query: 73  YARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGA 132
           +++ +FD   Q   L   N L+  +  N ++ EAL LF  L       D  +L CV+K  
Sbjct: 44  HSQQLFDETPQQ-GLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVC 102

Query: 133 ARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWN 192
             L     GKQ+H    K GF  D  V +SLV MY K   ++ G RVFD M  K++VSW 
Sbjct: 103 GCLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWT 162

Query: 193 CLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNR 248
            L+ GY + G  E A+KLF +M    +    F++  ++ G +  G VE   ++   +   
Sbjct: 163 SLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKS 222

Query: 249 NLVSW----NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELL 304
            L S     N+M+N Y K+  V  A  +FD ME R+ ++WNSMIAG+  NG  +EA EL 
Sbjct: 223 GLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELF 282

Query: 305 ETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKC 364
             M +  V        + +   A +  ++  + +H  ++KNG   D  + T L+  YSKC
Sbjct: 283 YRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKC 342

Query: 365 GSIESALTVFRAI-SKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGV 423
             I+ A  +F  +   + V  WTA+I G   +G   +A++LF +M R G++P   T+  +
Sbjct: 343 SEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTI 402

Query: 424 LNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRP 483
           L A      V+  + +  ++  +Y   P++     L D   + G   EA    E +  + 
Sbjct: 403 LTA---NAAVSPSQIHALVVKTNYENSPSVGT--ALSDSYSKIGDANEAAKIFELIDEK- 456

Query: 484 NFVIWMSLLSGARNHGN 500
           + V W ++LSG    G+
Sbjct: 457 DIVAWSAMLSGYAQMGD 473



 Score =  166 bits (419), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 131/503 (26%), Positives = 221/503 (43%), Gaps = 81/503 (16%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +Q+H   +K   +    + + L+ +Y+     ++     +FD  ++  ++V +  L+  Y
Sbjct: 112 KQVHCQCIKCGFVEDVSVGTSLVDMYMKTE--SVEDGERVFDE-MRVKNVVSWTSLLAGY 168

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
             N  + +AL LF  +    + P+ FT   V+ G A  GA+++G Q+H +V K G     
Sbjct: 169 RQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTI 228

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM--- 214
           FV +S+V+MY+K   +   + VFD+M++++ VSWN +I G+V  G    A +LF  M   
Sbjct: 229 FVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLE 288

Query: 215 ------------------------------------PDRDLFSWTCLVDGFSKCGKVEIA 238
                                                D DL   T L+  +SKC +++ A
Sbjct: 289 GVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDA 348

Query: 239 REIFYRMPN-RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRF 297
            ++F  M   +N+VSW A+I+GY++ G  D A  LF  M                     
Sbjct: 349 FKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRRE------------------ 390

Query: 298 MEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLL 357
                         V PN  T  + L+A A ++       +H+ +VK  +     +GT L
Sbjct: 391 -------------GVRPNHFTYSTILTANAAVS----PSQIHALVVKTNYENSPSVGTAL 433

Query: 358 IQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA 417
              YSK G    A  +F  I +K +  W+AM+ G    G    A+ +F ++ + G++P  
Sbjct: 434 SDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVEPNE 493

Query: 418 ITFIGVLNACSH-AGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTI 476
            TF  VLNAC+     V  G+++ +  I   G    +     LV +  + G +E A    
Sbjct: 494 FTFSSVLNACAAPTASVEQGKQFHSCSIKS-GFSNALCVSSALVTMYAKRGNIESANEVF 552

Query: 477 ESMPMRPNFVIWMSLLSGARNHG 499
           +    R + V W S++SG   HG
Sbjct: 553 KRQVDR-DLVSWNSMISGYAQHG 574



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 124/249 (49%), Gaps = 1/249 (0%)

Query: 254 NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL 313
            ++++ YMK   V+    +FD+M ++++++W S++AGY  NG   +AL+L   M +  + 
Sbjct: 131 TSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIK 190

Query: 314 PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTV 373
           PN  T  + L  +A    + KG  +H+ ++K+G      +G  ++ MYSK   +  A  V
Sbjct: 191 PNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAV 250

Query: 374 FRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLV 433
           F ++  +    W +MI G   +G+  +A +LF +M   G+K T   F  V+  C++   +
Sbjct: 251 FDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEM 310

Query: 434 NDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLS 493
           +  ++    +I + G +  +     L+    +   +++A      M    N V W +++S
Sbjct: 311 SFAKQLHCQVIKN-GSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIIS 369

Query: 494 GARNHGNKD 502
           G   +G  D
Sbjct: 370 GYVQNGRTD 378



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 154/323 (47%), Gaps = 19/323 (5%)

Query: 20  PSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFD 79
           P+   ++ +  ++      Q+HAL VKTN      + + L   Y    I + + A  IF+
Sbjct: 394 PNHFTYSTILTANAAVSPSQIHALVVKTNYENSPSVGTALSDSY--SKIGDANEAAKIFE 451

Query: 80  RILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKG-AARLGAI 138
            ++    +V ++ ++  Y        A+ +F  L    + P+ FT   V+   AA   ++
Sbjct: 452 -LIDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASV 510

Query: 139 KEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGY 198
           ++GKQ H    K GF     V S+LV+MYAK G I+    VF    D+DLVSWN +I GY
Sbjct: 511 EQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGY 570

Query: 199 VKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNR-----N 249
            + G  + ++K+F+EM  ++L     ++  ++   +  G V   +  F  M         
Sbjct: 571 AQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPT 630

Query: 250 LVSWNAMINGYMKAGDVDSACELFDDMEIRDLIT-WNSMIAGYELNGRFMEALELLETML 308
           +  ++ M++ Y +AG ++ A +L + M      T W +++A   ++   ++  EL    L
Sbjct: 631 MEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLN-VQLGELAAEKL 689

Query: 309 IGDVLPNDAT---LVSALSAVAG 328
           I  + P D+    L+S + A AG
Sbjct: 690 I-SLQPQDSAAYVLLSNIYATAG 711


>gi|115471325|ref|NP_001059261.1| Os07g0239600 [Oryza sativa Japonica Group]
 gi|33146689|dbj|BAC80084.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50510012|dbj|BAD30625.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610797|dbj|BAF21175.1| Os07g0239600 [Oryza sativa Japonica Group]
          Length = 720

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 238/664 (35%), Positives = 367/664 (55%), Gaps = 49/664 (7%)

Query: 71  LHYARSIFDRILQHPSLV--LYNLLIKCYVFNQRSHEALTLFCDLL-DRFLLPDNFTLPC 127
            H AR +FD   + P+    ++ L I       R  + +  F ++L +    P+ F L  
Sbjct: 61  FHDARGVFD---ERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEATPNAFVLAA 117

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD 187
           V++  A +G ++ GK++HG + + G   D  + ++++ MYAK G+ +  RRVF AM ++D
Sbjct: 118 VVRCCAGMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRVFGAMAERD 177

Query: 188 LVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPN 247
            VSWN  I   ++ G++  +M+LFDE P RD  SW  ++ G  + G    A     RM  
Sbjct: 178 AVSWNIAIGACIQSGDILGSMQLFDESPLRDTTSWNTIISGLMRSGHAADALSHLRRMAQ 237

Query: 248 RNLV---------------------------------------SWNAMINGYMKAGDVDS 268
             +V                                         +++++ Y K G +++
Sbjct: 238 AGVVFNHYTYSTAFVLAGMLLLPDLGRQLHGRVLIAALEGDAFVRSSLMDMYCKCGLLEA 297

Query: 269 ACELFDDME--IRDL-ITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSA 325
           A  +FD      RD+   W++M+AGY  NGR  EAL+L   ML   V  +  TL S  +A
Sbjct: 298 AASVFDHWSPLTRDMNFAWSTMVAGYVQNGREEEALDLFRRMLREGVAADRFTLTSVAAA 357

Query: 326 VAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHW 385
            A + ++ +GR +H  + K  + +D  L + ++ MY+KCG++E A ++F     K +  W
Sbjct: 358 CANVGMVEQGRQVHGCVEKLWYKLDAPLASAIVDMYAKCGNLEDARSIFDRACTKNIAVW 417

Query: 386 TAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN 445
           T+M+     HG    A++LF +M    M P  IT +GVL+ACSH GLV++G  YF  M  
Sbjct: 418 TSMLCSYASHGQGRIAIELFERMTAEKMTPNEITLVGVLSACSHVGLVSEGELYFKQMQE 477

Query: 446 DYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGE 505
           +YGI P+IEHY C+VD+  R+G L++AK+ IE   +    ++W +LLS  R H + +  +
Sbjct: 478 EYGIVPSIEHYNCIVDLYGRSGLLDKAKNFIEENNINHEAIVWKTLLSACRLHQHNEYAK 537

Query: 506 YAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVL 565
            A+  L+++     G YV+LSNIYA   +W    E+R  M++R  RK PG S I  +  +
Sbjct: 538 LASEKLVQLEQCDAGSYVMLSNIYATNNKWHDTFELRVSMQERKVRKQPGRSWIHLKNTV 597

Query: 566 HEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERL 625
           H FV GD SHPQ+ EI++ L ++  +LK  G+   T  V+  +ED+ ++E  L+ HSE+L
Sbjct: 598 HTFVAGDASHPQSAEIYAYLEKLVERLKEIGYTSRTDLVVHDVEDE-QRETALKFHSEKL 656

Query: 626 AIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSC 685
           AIAFG+I+  S +P+RI KNLRVC DCH   K +S    REI+VRD  RFHHFK+ SCSC
Sbjct: 657 AIAFGIISTPSGTPLRIFKNLRVCEDCHEAIKYISLATGREIVVRDLYRFHHFKDASCSC 716

Query: 686 KDFW 689
           +DFW
Sbjct: 717 EDFW 720



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 118/441 (26%), Positives = 207/441 (46%), Gaps = 41/441 (9%)

Query: 93  LIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLG 152
           +++ +V  +R H+A  +F +   R      +TL   I G AR G   +G +    +   G
Sbjct: 51  VLRFWVRRRRFHDARGVFDERPTR--TAPVWTL--TISGCARRGRYADGMRAFAEMLAEG 106

Query: 153 FGF-DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLF 211
               + FVL+++V   A  G+++ G+RV                 G++ +  V +     
Sbjct: 107 EATPNAFVLAAVVRCCAGMGDVESGKRV----------------HGWMLRNGVHL----- 145

Query: 212 DEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACE 271
                 D+     ++D ++KCG+ E AR +F  M  R+ VSWN  I   +++GD+  + +
Sbjct: 146 ------DVVLCNAVLDMYAKCGQFERARRVFGAMAERDAVSWNIAIGACIQSGDILGSMQ 199

Query: 272 LFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAV 331
           LFD+  +RD  +WN++I+G   +G   +AL  L  M    V+ N  T  +A      L +
Sbjct: 200 LFDESPLRDTTSWNTIISGLMRSGHAADALSHLRRMAQAGVVFNHYTYSTAFVLAGMLLL 259

Query: 332 LNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVF---RAISKKKVGHWTAM 388
            + GR +H  ++      D  + + L+ MY KCG +E+A +VF     +++     W+ M
Sbjct: 260 PDLGRQLHGRVLIAALEGDAFVRSSLMDMYCKCGLLEAAASVFDHWSPLTRDMNFAWSTM 319

Query: 389 IVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIND-Y 447
           + G   +G   +ALDLF +M R G+     T   V  AC++ G+V  GR+    +    Y
Sbjct: 320 VAGYVQNGREEEALDLFRRMLREGVAADRFTLTSVAAACANVGMVEQGRQVHGCVEKLWY 379

Query: 448 GIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYA 507
            ++  +     +VD+  + G LE+A+S  +    + N  +W S+L    +HG   I    
Sbjct: 380 KLDAPLA--SAIVDMYAKCGNLEDARSIFDRACTK-NIAVWTSMLCSYASHGQGRIAIEL 436

Query: 508 ANNLI--KVAPDTIGCYVVLS 526
              +   K+ P+ I    VLS
Sbjct: 437 FERMTAEKMTPNEITLVGVLS 457



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 130/269 (48%), Gaps = 14/269 (5%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRI--LQHPSLVLYNLLIK 95
           +QLH   +   L   + + S L+ +Y    +  L  A S+FD    L       ++ ++ 
Sbjct: 264 RQLHGRVLIAALEGDAFVRSSLMDMYCKCGL--LEAAASVFDHWSPLTRDMNFAWSTMVA 321

Query: 96  CYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF 155
            YV N R  EAL LF  +L   +  D FTL  V    A +G +++G+Q+HG V KL +  
Sbjct: 322 GYVQNGREEEALDLFRRMLREGVAADRFTLTSVAAACANVGMVEQGRQVHGCVEKLWYKL 381

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP 215
           D  + S++V MYAK G ++  R +FD    K++  W  ++  Y   G+  +A++LF+ M 
Sbjct: 382 DAPLASAIVDMYAKCGNLEDARSIFDRACTKNIAVWTSMLCSYASHGQGRIAIELFERMT 441

Query: 216 DRDLF-SWTCLVDGFSKCGKVEIARE---IFYRMPNR-----NLVSWNAMINGYMKAGDV 266
              +  +   LV   S C  V +  E    F +M        ++  +N +++ Y ++G +
Sbjct: 442 AEKMTPNEITLVGVLSACSHVGLVSEGELYFKQMQEEYGIVPSIEHYNCIVDLYGRSGLL 501

Query: 267 DSACELFDDMEI-RDLITWNSMIAGYELN 294
           D A    ++  I  + I W ++++   L+
Sbjct: 502 DKAKNFIEENNINHEAIVWKTLLSACRLH 530


>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g16835, mitochondrial; AltName: Full=Protein DYW10;
           Flags: Precursor
 gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 656

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 232/535 (43%), Positives = 322/535 (60%), Gaps = 2/535 (0%)

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP 215
           D F  + ++S Y +    +  +  FD M  KD  SWN +I GY ++GE+E A +LF  M 
Sbjct: 123 DTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSMM 182

Query: 216 DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDD 275
           +++  SW  ++ G+ +CG +E A   F   P R +V+W AMI GYMKA  V+ A  +F D
Sbjct: 183 EKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKD 242

Query: 276 MEI-RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNK 334
           M + ++L+TWN+MI+GY  N R  + L+L   ML   + PN + L SAL   + L+ L  
Sbjct: 243 MTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQL 302

Query: 335 GRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGM 394
           GR +H  + K+    D    T LI MY KCG +  A  +F  + KK V  W AMI G   
Sbjct: 303 GRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQ 362

Query: 395 HGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIE 454
           HG A +AL LF +M    ++P  ITF+ VL AC+HAGLVN G  YF  M+ DY +EP  +
Sbjct: 363 HGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPD 422

Query: 455 HYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKV 514
           HY C+VD+L R G LEEA   I SMP RP+  ++ +LL   R H N ++ E+AA  L+++
Sbjct: 423 HYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQL 482

Query: 515 APDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKS 574
                  YV L+NIYA+  +W+ V+ VR+ MK+    K PG S IE R  +H F   D+ 
Sbjct: 483 NSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIEIRNKVHHFRSSDRI 542

Query: 575 HPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINV 634
           HP+ D IH KL E+  K+K AG+ P+    L  +E++ +KE  L  HSE+LA+AFG I +
Sbjct: 543 HPELDSIHKKLKELEKKMKLAGYKPELEFALHNVEEE-QKEKLLLWHSEKLAVAFGCIKL 601

Query: 635 KSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
              S I++ KNLR+C DCH   K +S I  REIIVRD +RFHHFK+GSCSC D+W
Sbjct: 602 PQGSQIQVFKNLRICGDCHKAIKFISEIEKREIIVRDTTRFHHFKDGSCSCGDYW 656



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 157/346 (45%), Gaps = 14/346 (4%)

Query: 184 DDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSK-CGKVEIAREIF 242
           D   +   N +I   V+ G+++ A+++F  M  ++  +W  L+ G SK   ++  A ++F
Sbjct: 57  DQDQIFPLNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLF 116

Query: 243 YRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALE 302
             +P  +  S+N M++ Y++  + + A   FD M  +D  +WN+MI GY   G   +A E
Sbjct: 117 DEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARE 176

Query: 303 LLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYS 362
           L  +M+      N+ +  + +S       L K     S+  K   V   V  T +I  Y 
Sbjct: 177 LFYSMM----EKNEVSWNAMISGYIECGDLEKA----SHFFKVAPVRGVVAWTAMITGYM 228

Query: 363 KCGSIESALTVFRAIS-KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFI 421
           K   +E A  +F+ ++  K +  W AMI G   +      L LF  M   G++P +    
Sbjct: 229 KAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLS 288

Query: 422 GVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPM 481
             L  CS    +  GR+  + +++   +   +     L+ + C+ G L +A    E M  
Sbjct: 289 SALLGCSELSALQLGRQ-IHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMK- 346

Query: 482 RPNFVIWMSLLSGARNHGNKDIGEYAANNLI--KVAPDTIGCYVVL 525
           + + V W +++SG   HGN D        +I  K+ PD I    VL
Sbjct: 347 KKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVL 392



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/215 (31%), Positives = 107/215 (49%), Gaps = 9/215 (4%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           A ++F  +  + +LV +N +I  YV N R  + L LF  +L+  + P++  L   + G +
Sbjct: 236 AEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCS 295

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
            L A++ G+QIH +V K     D   L+SL+SMY K GE+    ++F+ M  KD+V+WN 
Sbjct: 296 ELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNA 355

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDRDLF-SWTCLVDGFSKC---GKVEIAREIFYRMPNRN 249
           +I GY + G  + A+ LF EM D  +   W   V     C   G V I    F  M    
Sbjct: 356 MISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDY 415

Query: 250 LVS-----WNAMINGYMKAGDVDSACELFDDMEIR 279
            V      +  M++   +AG ++ A +L   M  R
Sbjct: 416 KVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFR 450


>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Glycine max]
          Length = 617

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 223/608 (36%), Positives = 349/608 (57%), Gaps = 47/608 (7%)

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDL---GRRVFDAMD 184
           V++   R  ++ + K++H  ++        +VL+ L+ +      + L    R +F  + 
Sbjct: 11  VVRILERCSSLNQAKEVHAQIYIKNLQQSSYVLTKLLRLVTALPHVPLHSYPRLLFSQLH 70

Query: 185 DKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR--------------------------- 217
             +  +W  LI  Y  +G +  A+  +  M  R                           
Sbjct: 71  TPNPFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRHSALGAQ 130

Query: 218 -------------DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAG 264
                        DL+    ++D + KCG +  AR +F  MP R+++SW  +I  Y + G
Sbjct: 131 LHAQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIVAYTRIG 190

Query: 265 DVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS 324
           D+ +A +LFD + ++D++TW +M+ GY  N   M+ALE+   +    V  ++ TLV  +S
Sbjct: 191 DMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVGVIS 250

Query: 325 AVAGLAVLNKGRWMHSYIVKNGF-VVDGVL-GTLLIQMYSKCGSIESALTVFRAISKKKV 382
           A A L       W+      +GF V D VL G+ LI MYSKCG++E A  VF+ + ++ V
Sbjct: 251 ACAQLGASKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMRERNV 310

Query: 383 GHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNM 442
             +++MIVG  +HG A  A+ LF  M   G+KP  +TF+GVL ACSHAGLV+ G++ F  
Sbjct: 311 FSYSSMIVGFAIHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQGQQLFAS 370

Query: 443 MINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKD 502
           M   YG+ PT E Y C+ D+L R GYLE+A   +E+MPM  +  +W +LL  +  HGN D
Sbjct: 371 MEKCYGVAPTAELYACMTDLLSRAGYLEKALQLVETMPMESDGAVWGALLGASHVHGNPD 430

Query: 503 IGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHR 562
           + E A+  L ++ PD IG Y++LSN YA+AG+WD VS+VR++++++  +K+PG S +E +
Sbjct: 431 VAEIASKRLFELEPDNIGNYLLLSNTYASAGRWDDVSKVRKLLREKNLKKNPGWSWVEAK 490

Query: 563 -GVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENH 621
            G++H+FV GD SHP+ +EI  +L+++  +LK  G+ P+ + +   I D +EK   L  H
Sbjct: 491 NGMIHKFVAGDVSHPKINEIKKELNDLLERLKGIGYQPNLSSLPYGIND-REKRLLLMAH 549

Query: 622 SERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNG 681
           SE+LA+AFGL++    S I+I+KNLR+C DCH V    S +  R+I+VRDN+RFHHF NG
Sbjct: 550 SEKLALAFGLLSTDVGSTIKIMKNLRICEDCHIVMCGASKVTGRKIVVRDNTRFHHFLNG 609

Query: 682 SCSCKDFW 689
           +CSC +FW
Sbjct: 610 ACSCSNFW 617


>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 663

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 246/619 (39%), Positives = 355/619 (57%), Gaps = 51/619 (8%)

Query: 117 FLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLG 176
           F LP + T   ++K    L  IK   QIH  V   G   +  +L  L+  Y     +   
Sbjct: 50  FSLPSHSTFVQLLKKRPSLTQIK---QIHAQVVTHGLAQNTSLLGPLIHSYIGCRNLSFA 106

Query: 177 RRVFDAMDD-KDLVSWNCLIDGYVKKGEVEVAMKLFDEM--------------------- 214
           R VFD        + WN +I  Y K    + ++ LF +M                     
Sbjct: 107 RIVFDQFPSLPPTIIWNLMIQAYSKTPSSQESLYLFHQMLAHGRPTSADKYTFTFVFTAC 166

Query: 215 ---P------------------DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSW 253
              P                  + D+F    LV+ +S   ++  A+ +F  MP R++++W
Sbjct: 167 SRHPTLRGYGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRDVITW 226

Query: 254 NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGD-V 312
            +++ GY   G++  A ELFD M  R+ ++W  M+AGY  +  + EAL+    ML  D V
Sbjct: 227 TSVVKGYAMRGELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEV 286

Query: 313 LPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALT 372
            PN+A LVS LSA A L  L++G+W+H YI KN  ++   + T LI MY+KCG I+ A  
Sbjct: 287 KPNEAVLVSILSACAHLGALDQGKWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARR 346

Query: 373 VFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGL 432
           VF  + K+ +  WT+MI GL MHG+  + L  F++M   G KP  IT +GVLN CSH+GL
Sbjct: 347 VFDGLHKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPDDITLLGVLNGCSHSGL 406

Query: 433 VNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLL 492
           V +G   F+ MI  +GI P +EHYGCL+D+L R G LE A   I+SMPM P+ V W +LL
Sbjct: 407 VEEGLSIFHDMIPLWGIVPKLEHYGCLIDLLGRAGRLESAFEAIKSMPMEPDVVAWRALL 466

Query: 493 SGARNHGNKDIGEYAANNLIKVAPDTI-GCYVVLSNIYAAAGQWDKVSEVREMMKKRGFR 551
           S  R HG+ D+GE   N++ ++ P +  G YV+LSN+YA+ GQW+ V++VR+ M +RG  
Sbjct: 467 SACRIHGDVDLGERIINHIAELCPGSHGGGYVLLSNLYASMGQWESVTKVRKAMSQRGSE 526

Query: 552 KDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLK-AAGHVPDTTQVLLCIED 610
             PG S IE  GV+HEF+  DK HP+  EI+ KL+E+  ++    G+VP T QVL  + +
Sbjct: 527 GCPGCSWIEIDGVVHEFLAADKLHPRISEINKKLNEVLRRISIEGGYVPSTKQVLFDL-N 585

Query: 611 QKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVR 670
           +++KE  +  HSE+LA+AFGL++ +  + IRI KNLR C DCHS  K +S ++NREI+VR
Sbjct: 586 EEDKEQAVSWHSEKLAVAFGLLSTQEGT-IRITKNLRTCEDCHSAMKTISLVFNREIVVR 644

Query: 671 DNSRFHHFKNGSCSCKDFW 689
           D SRFH F+ G+CSC D+W
Sbjct: 645 DRSRFHTFRYGNCSCTDYW 663



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 122/416 (29%), Positives = 197/416 (47%), Gaps = 47/416 (11%)

Query: 26  NILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHP 85
            +LK   +  + +Q+HA  V   L  ++ +   L+  Y+     NL +AR +FD+    P
Sbjct: 60  QLLKKRPSLTQIKQIHAQVVTHGLAQNTSLLGPLIHSYIG--CRNLSFARIVFDQFPSLP 117

Query: 86  SLVLYNLLIKCYVFNQRSHEALTLFCDLL--DRFLLPDNFTLPCVIKGAARLGAIK-EGK 142
             +++NL+I+ Y     S E+L LF  +L   R    D +T   V    +R   ++  G+
Sbjct: 118 PTIIWNLMIQAYSKTPSSQESLYLFHQMLAHGRPTSADKYTFTFVFTACSRHPTLRGYGE 177

Query: 143 QIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKG 202
            +HG+V K G+  D FV +SLV+MY+ F  +   +RVFD M  +D+++W  ++ GY  +G
Sbjct: 178 NVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRDVITWTSVVKGYAMRG 237

Query: 203 EVEVAMKLFDEMPDRDLFSWTCLVDGF--------------------------------- 229
           E+  A +LFD MP R+  SW  +V G+                                 
Sbjct: 238 ELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVKPNEAVLVSIL 297

Query: 230 SKC---GKVEIAREI-FYRMPNRNLVSWN---AMINGYMKAGDVDSACELFDDMEIRDLI 282
           S C   G ++  + I  Y   NR L+S N   A+I+ Y K G +D A  +FD +  RDL+
Sbjct: 298 SACAHLGALDQGKWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRVFDGLHKRDLL 357

Query: 283 TWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKG-RWMHSY 341
           TW SMI+G  ++G   E L     ML     P+D TL+  L+  +   ++ +G    H  
Sbjct: 358 TWTSMISGLSMHGLGAECLWTFSEMLAEGFKPDDITLLGVLNGCSHSGLVEEGLSIFHDM 417

Query: 342 IVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS-KKKVGHWTAMIVGLGMHG 396
           I   G V        LI +  + G +ESA    +++  +  V  W A++    +HG
Sbjct: 418 IPLWGIVPKLEHYGCLIDLLGRAGRLESAFEAIKSMPMEPDVVAWRALLSACRIHG 473



 Score = 47.4 bits (111), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 39/183 (21%), Positives = 80/183 (43%), Gaps = 5/183 (2%)

Query: 36  ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIK 95
           + + +H    K  ++  S IS+ L+ +Y       +  AR +FD  L    L+ +  +I 
Sbjct: 308 QGKWIHVYIDKNRILLSSNISTALIDMYAK--CGRIDCARRVFDG-LHKRDLLTWTSMIS 364

Query: 96  CYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQI-HGLVFKLGFG 154
               +    E L  F ++L     PD+ TL  V+ G +  G ++EG  I H ++   G  
Sbjct: 365 GLSMHGLGAECLWTFSEMLAEGFKPDDITLLGVLNGCSHSGLVEEGLSIFHDMIPLWGIV 424

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMD-DKDLVSWNCLIDGYVKKGEVEVAMKLFDE 213
                   L+ +  + G ++       +M  + D+V+W  L+      G+V++  ++ + 
Sbjct: 425 PKLEHYGCLIDLLGRAGRLESAFEAIKSMPMEPDVVAWRALLSACRIHGDVDLGERIINH 484

Query: 214 MPD 216
           + +
Sbjct: 485 IAE 487


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 229/625 (36%), Positives = 367/625 (58%), Gaps = 32/625 (5%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           A  +FD++     ++ +N +I  YV N  +   L ++  ++   +  D  T+  V+ G A
Sbjct: 204 AFELFDKLCDR-DVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCA 262

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
             G +  GK +H L  K  F       ++L+ MY+K G++D   RVF+ M ++++VSW  
Sbjct: 263 NSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTS 322

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREI--FYRMPN 247
           +I GY + G  + A+KL  +M       D+ + T ++   ++ G ++  +++  + +  N
Sbjct: 323 MIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANN 382

Query: 248 --RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLE 305
              NL   NA+++ Y K G +++A  +F  M ++D+I+WN+MI                 
Sbjct: 383 MESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMI----------------- 425

Query: 306 TMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCG 365
               G++ P+  T+   L A A L+ L +G+ +H YI++NG+  D  +   L+ +Y KCG
Sbjct: 426 ----GELKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCG 481

Query: 366 SIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN 425
            +  A  +F  I  K +  WT MI G GMHG   +A+  FN+M   G++P  ++FI +L 
Sbjct: 482 VLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILY 541

Query: 426 ACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNF 485
           ACSH+GL+  G R+F +M ND+ IEP +EHY C+VD+L RTG L +A   +E++P+ P+ 
Sbjct: 542 ACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFMETLPIAPDA 601

Query: 486 VIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMM 545
            IW +LL G RN+ + ++ E  A  + ++ P+  G YV+L+NIYA A +W++V  +RE +
Sbjct: 602 TIWGALLCGCRNYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRLREKI 661

Query: 546 KKRGFRKDPGSSSIEHRGVLHEFVVG-DKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQV 604
            K+G RK+PG S IE +G ++ FV G + SHP +  I S L +MR K+K  GH P T   
Sbjct: 662 GKQGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKNIESLLKKMRRKMKEEGHFPKTKYA 721

Query: 605 LLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYN 664
           L+   D+ +KE  L  HSE+LA+AFGL+ +  R  IR+ KNLRVC DCH + K +S    
Sbjct: 722 LI-NADEMQKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETR 780

Query: 665 REIIVRDNSRFHHFKNGSCSCKDFW 689
           REI++RD++RFHHFK+G CSC+ FW
Sbjct: 781 REIVLRDSNRFHHFKDGYCSCRGFW 805



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 84/288 (29%), Positives = 146/288 (50%), Gaps = 22/288 (7%)

Query: 225 LVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDV------------------ 266
           LV  ++ CG ++  R +F  M  +N+  WN M++ Y K GD                   
Sbjct: 140 LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGK 199

Query: 267 --DSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS 324
             +SA ELFD +  RD+I+WNSMI+GY  NG     L + + M+   +  + AT++S L 
Sbjct: 200 RPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLV 259

Query: 325 AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGH 384
             A    L+ G+ +HS  +K+ F         L+ MYSKCG ++ AL VF  + ++ V  
Sbjct: 260 GCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVS 319

Query: 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMI 444
           WT+MI G    G +  A+ L  +M + G+K   +    +L+AC+ +G +++G+   +  I
Sbjct: 320 WTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHD-YI 378

Query: 445 NDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLL 492
               +E  +     L+D+  + G +E A S   +M ++ + + W +++
Sbjct: 379 KANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVK-DIISWNTMI 425



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 119/325 (36%), Gaps = 87/325 (26%)

Query: 229 FSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMI 288
           FS C  + I+     R  +  +  +NA I  + + GD+++A EL              M 
Sbjct: 46  FSSCIPIRISATP-TRTIDHQVTDYNAKILHFCQLGDLENAMELI------------CMC 92

Query: 289 AGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFV 348
              E           LET   G V          L   AGL     G+ +HS I  N   
Sbjct: 93  QKSE-----------LETKTYGSV----------LQLCAGLKSFTDGKKVHSIIKSNSVG 131

Query: 349 VDGVLGTLLIQMYSKCGSIESALTVFRAISKK-------------KVG------------ 383
           VDG LG  L+  Y+ CG ++    VF  + KK             K+G            
Sbjct: 132 VDGALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIM 191

Query: 384 --------------------------HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA 417
                                      W +MI G   +G+  + L ++ +M  +G+    
Sbjct: 192 VEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDL 251

Query: 418 ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIE 477
            T I VL  C+++G ++ G+   ++ I     E  I     L+D+  + G L+ A    E
Sbjct: 252 ATIISVLVGCANSGTLSLGKAVHSLAIKS-SFERRINFSNTLLDMYSKCGDLDGALRVFE 310

Query: 478 SMPMRPNFVIWMSLLSGARNHGNKD 502
            M  R N V W S+++G    G  D
Sbjct: 311 KMGER-NVVSWTSMIAGYTRDGRSD 334


>gi|115462637|ref|NP_001054918.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|48475165|gb|AAT44234.1| unknown protein, contains PPR repeat [Oryza sativa Japonica Group]
 gi|113578469|dbj|BAF16832.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|215695208|dbj|BAG90399.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630605|gb|EEE62737.1| hypothetical protein OsJ_17540 [Oryza sativa Japonica Group]
          Length = 822

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 234/632 (37%), Positives = 364/632 (57%), Gaps = 24/632 (3%)

Query: 70  NLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVI 129
           +L  AR +FD +++  ++V++ LLI  YV  + + EA+ +F D L+    PD +T+  +I
Sbjct: 203 DLASARKVFDGLIE-KTVVVWTLLISRYVQGECAEEAVEIFLDFLEDGFEPDRYTMSSMI 261

Query: 130 KGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFG---EIDLGRRVFDAMDDK 186
                LG+++ G Q+H L  ++GF  D  V   LV MYAK      +D   +VF+ M   
Sbjct: 262 SACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYAKSNIEQAMDYANKVFERMRKN 321

Query: 187 DLVSWNCLIDGYVKKGEVE-VAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREI 241
           D++SW  LI GYV+ G  E   M LF EM +  +     +++ ++   +     +  R++
Sbjct: 322 DVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHITYSSILKACANISDHDSGRQV 381

Query: 242 FYRMPNRNLVSW----NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRF 297
              +   N  +     NA+++ Y ++G ++ A  +F+ +  R +I+  +      L+ R 
Sbjct: 382 HAHVIKSNQAAAHTVGNALVSMYAESGCMEEARRVFNQLYERSMISCITEGRDAPLDHRI 441

Query: 298 MEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLL 357
                        D+  + +T  S +SA A + +L KG+ +H+  +K GF  D  +   L
Sbjct: 442 GRM----------DMGISSSTFASLISAAASVGMLTKGQQLHAMTLKAGFGSDRFVSNSL 491

Query: 358 IQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA 417
           + MYS+CG +E A   F  +  + V  WT+MI GL  HG A +AL LF+ M   G+KP  
Sbjct: 492 VSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPND 551

Query: 418 ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIE 477
           +T+I VL+ACSH GLV +G+ YF  M  D+G+ P +EHY C+VD+L R+G ++EA   I 
Sbjct: 552 VTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGLVKEALEFIN 611

Query: 478 SMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDK 537
            MP++ + ++W +LL   R+H N ++GE AA N+I++ P     YV+LSN+YA AG WD+
Sbjct: 612 EMPLKADALVWKTLLGACRSHDNIEVGEIAAKNVIELEPRDPAPYVLLSNLYADAGLWDE 671

Query: 538 VSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGH 597
           V+ +R  M+     K+ G S +E     HEF  GD SHP+  +I+ KL  +  ++K  G+
Sbjct: 672 VARIRSAMRDNNLNKETGLSWMEVENTTHEFRAGDTSHPRAQDIYGKLDTLVGEIKGMGY 731

Query: 598 VPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTK 657
           VPDT+ VL  + D+  KE  L  HSE++A+AFGLI   +  PIRI KNLRVC DCHS  K
Sbjct: 732 VPDTSIVLHDMSDEL-KEQYLLQHSEKIAVAFGLITTSAPKPIRIFKNLRVCADCHSAIK 790

Query: 658 LLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            +S    REII+RD++RFH  K+G CSC ++W
Sbjct: 791 YMSKATRREIILRDSNRFHRMKDGECSCGEYW 822



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 129/495 (26%), Positives = 245/495 (49%), Gaps = 44/495 (8%)

Query: 55  ISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL 114
           +++ LL+LY       +  AR++FD +     +V +  +  C   N    E+L L  ++L
Sbjct: 86  VANSLLTLY--SRCGAVASARNVFDGMRGLRDIVSWTAMASCLARNGAERESLLLIGEML 143

Query: 115 DRFLLPDNFTLPCVIKGAARLGAI--KEGKQIHGLVFKLG-FGFDKFVLSSLVSMYAKFG 171
           +  LLP+ +TL C +  A     +    G  + GLV K+G +G D  V S+L+ M A+ G
Sbjct: 144 ESGLLPNAYTL-CAVAHACFPHELYCLVGGVVLGLVHKMGLWGTDIAVGSALIDMLARNG 202

Query: 172 EIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCL 225
           ++   R+VFD + +K +V W  LI  YV+    E A+++F +       PDR  ++ + +
Sbjct: 203 DLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIFLDFLEDGFEPDR--YTMSSM 260

Query: 226 VDGFSKCGKVEIAREIFYRMPNRNLVSWNA-----MINGYMKAG---DVDSACELFDDME 277
           +   ++ G V +  ++ + +  R   + +A     +++ Y K+     +D A ++F+ M 
Sbjct: 261 ISACTELGSVRLGLQL-HSLALRMGFASDACVSCGLVDMYAKSNIEQAMDYANKVFERMR 319

Query: 278 IRDLITWNSMIAGYELNG-RFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGR 336
             D+I+W ++I+GY  +G +  + + L   ML   + PN  T  S L A A ++  + GR
Sbjct: 320 KNDVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHITYSSILKACANISDHDSGR 379

Query: 337 WMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHG 396
            +H++++K+       +G  L+ MY++ G +E A  VF  + ++             M  
Sbjct: 380 QVHAHVIKSNQAAAHTVGNALVSMYAESGCMEEARRVFNQLYERS------------MIS 427

Query: 397 MATQALD--LFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN-DYGIEPTI 453
             T+  D  L +++ RM M  ++ TF  +++A +  G++  G++   M +   +G +  +
Sbjct: 428 CITEGRDAPLDHRIGRMDMGISSSTFASLISAAASVGMLTKGQQLHAMTLKAGFGSDRFV 487

Query: 454 EHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG--NKDIGEYAANNL 511
            +   LV +  R GYLE+A  +   +  R N + W S++SG   HG   + +  +    L
Sbjct: 488 SN--SLVSMYSRCGYLEDACRSFNELKDR-NVISWTSMISGLAKHGYAERALSLFHDMIL 544

Query: 512 IKVAPDTIGCYVVLS 526
             V P+ +    VLS
Sbjct: 545 TGVKPNDVTYIAVLS 559



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 104/438 (23%), Positives = 195/438 (44%), Gaps = 35/438 (7%)

Query: 136 GAIKEGKQIHGLVFKLGF-GFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD-KDLVSWNC 193
           G ++ G+ +H  + +      D  V +SL+++Y++ G +   R VFD M   +D+VSW  
Sbjct: 62  GDLRLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTA 121

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDRDLF--SWTCLVDGFS------KCGKVEIAREIFYRM 245
           +     + G    ++ L  EM +  L   ++T      +       C    +   + ++M
Sbjct: 122 MASCLARNGAERESLLLIGEMLESGLLPNAYTLCAVAHACFPHELYCLVGGVVLGLVHKM 181

Query: 246 P--NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALEL 303
                ++   +A+I+   + GD+ SA ++FD +  + ++ W  +I+ Y       EA+E+
Sbjct: 182 GLWGTDIAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEI 241

Query: 304 LETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSK 363
               L     P+  T+ S +SA   L  +  G  +HS  ++ GF  D  +   L+ MY+K
Sbjct: 242 FLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYAK 301

Query: 364 CGSIESAL----TVFRAISKKKVGHWTAMIVGLGMHGMA-TQALDLFNKMCRMGMKPTAI 418
             +IE A+     VF  + K  V  WTA+I G    G+   + + LF +M    +KP  I
Sbjct: 302 -SNIEQAMDYANKVFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHI 360

Query: 419 TFIGVLNACSHAGLVNDGRR-YFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIE 477
           T+  +L AC++    + GR+ + +++ ++     T+ +   LV +   +G +EEA+    
Sbjct: 361 TYSSILKACANISDHDSGRQVHAHVIKSNQAAAHTVGN--ALVSMYAESGCMEEARRVFN 418

Query: 478 SMPMRPNFVIWMSLLSGARNH--GNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQW 535
            +  R              +H  G  D+G         ++  T   +  L +  A+ G  
Sbjct: 419 QLYERSMISCITEGRDAPLDHRIGRMDMG---------ISSST---FASLISAAASVGML 466

Query: 536 DKVSEVREMMKKRGFRKD 553
            K  ++  M  K GF  D
Sbjct: 467 TKGQQLHAMTLKAGFGSD 484



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 149/313 (47%), Gaps = 32/313 (10%)

Query: 32  STHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYN 91
           S H   +Q+HA  +K+N      + + L+S+Y +     +  AR +F+++ +        
Sbjct: 373 SDHDSGRQVHAHVIKSNQAAAHTVGNALVSMYAES--GCMEEARRVFNQLYERS------ 424

Query: 92  LLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKL 151
            +I C    +     L      +D  +    F    +I  AA +G + +G+Q+H +  K 
Sbjct: 425 -MISC--ITEGRDAPLDHRIGRMDMGISSSTFA--SLISAAASVGMLTKGQQLHAMTLKA 479

Query: 152 GFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLF 211
           GFG D+FV +SLVSMY++ G ++   R F+ + D++++SW  +I G  K G  E A+ LF
Sbjct: 480 GFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLF 539

Query: 212 DEM------PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRN-----LVSWNAMINGY 260
            +M      P+    ++  ++   S  G V   +E F  M   +     +  +  M++  
Sbjct: 540 HDMILTGVKPND--VTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLL 597

Query: 261 MKAGDVDSACELFDDMEIR-DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDAT- 318
            ++G V  A E  ++M ++ D + W +++     +   +E  E+    +I ++ P D   
Sbjct: 598 ARSGLVKEALEFINEMPLKADALVWKTLLGACRSHDN-IEVGEIAAKNVI-ELEPRDPAP 655

Query: 319 --LVSALSAVAGL 329
             L+S L A AGL
Sbjct: 656 YVLLSNLYADAGL 668


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 230/625 (36%), Positives = 366/625 (58%), Gaps = 32/625 (5%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           A  +FD++     ++ +N +I  YV N  +   L ++  ++   +  D  T+  V+ G A
Sbjct: 204 AFELFDKLCDR-DVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCA 262

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
             G +  GK +H L  K  F       ++L+ MY+K G++D   RVF+ M ++++VSW  
Sbjct: 263 NSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTS 322

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREI--FYRMPN 247
           +I GY + G  + A+KL  +M       D+ + T ++   ++ G ++  +++  + +  N
Sbjct: 323 MIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANN 382

Query: 248 --RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLE 305
              NL   NA+++ Y K G +++A  +F  M ++D+I+WN+MI                 
Sbjct: 383 MESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMI----------------- 425

Query: 306 TMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCG 365
               G++ P+  T+   L A A L+ L +G+ +H YI++NG+  D  +   L+ +Y KCG
Sbjct: 426 ----GELKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCG 481

Query: 366 SIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN 425
            +  A  +F  I  K +  WT MI G GMHG   +A+  FN+M   G++P  ++FI +L 
Sbjct: 482 VLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILY 541

Query: 426 ACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNF 485
           ACSH+GL+  G R+F +M ND+ IEP +EHY C+VD+L RTG L +A   IE++P+ P+ 
Sbjct: 542 ACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDA 601

Query: 486 VIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMM 545
            IW +LL G RN+ + ++ E  A  + ++ P+  G YV+L+NIYA A +W++V  +RE +
Sbjct: 602 TIWGALLCGCRNYHDIELAEKVAERVFELEPENSGYYVLLANIYAEAEKWEEVKRLREKI 661

Query: 546 KKRGFRKDPGSSSIEHRGVLHEFVVG-DKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQV 604
            K+G RK+PG S IE +G ++ FV G + SHP +  I S L +MR K+K  GH P T   
Sbjct: 662 GKQGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKNIESLLKKMRRKMKEEGHFPKTKYA 721

Query: 605 LLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYN 664
           L+   D+ +KE  L  HSE+LA+AFGL+ +  R  IR+ KNLRVC DCH + K +S    
Sbjct: 722 LI-NADEMQKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETR 780

Query: 665 REIIVRDNSRFHHFKNGSCSCKDFW 689
           REI++RD +RFHHFK+G CSC+ FW
Sbjct: 781 REIVLRDPNRFHHFKDGYCSCRGFW 805



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 84/288 (29%), Positives = 146/288 (50%), Gaps = 22/288 (7%)

Query: 225 LVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDV------------------ 266
           LV  ++ CG ++  R +F  M  +N+  WN M++ Y K GD                   
Sbjct: 140 LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGK 199

Query: 267 --DSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS 324
             +SA ELFD +  RD+I+WNSMI+GY  NG     L + + M+   +  + AT++S L 
Sbjct: 200 RPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLV 259

Query: 325 AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGH 384
             A    L+ G+ +HS  +K+ F         L+ MYSKCG ++ AL VF  + ++ V  
Sbjct: 260 GCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVS 319

Query: 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMI 444
           WT+MI G    G +  A+ L  +M + G+K   +    +L+AC+ +G +++G+   +  I
Sbjct: 320 WTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHD-YI 378

Query: 445 NDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLL 492
               +E  +     L+D+  + G +E A S   +M ++ + + W +++
Sbjct: 379 KANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVK-DIISWNTMI 425



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 74/325 (22%), Positives = 117/325 (36%), Gaps = 87/325 (26%)

Query: 229 FSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMI 288
           FS C  + I+     R  +  +  +NA I  + + GD+++A EL              M 
Sbjct: 46  FSSCIPIRISATP-TRTIDHQVTDYNAKILHFCQLGDLENAMELI------------CMC 92

Query: 289 AGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFV 348
              EL  +                     T  S L   AGL     G+ +HS I  N   
Sbjct: 93  KKSELETK---------------------TYSSVLQLCAGLKSFTDGKKVHSIIKSNSVG 131

Query: 349 VDGVLGTLLIQMYSKCGSIESALTVFRAISKK-------------KVG------------ 383
           VD  LG  L+  Y+ CG ++    VF  + KK             K+G            
Sbjct: 132 VDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIM 191

Query: 384 --------------------------HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA 417
                                      W +MI G   +G+  + L ++ +M  +G+    
Sbjct: 192 VEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDL 251

Query: 418 ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIE 477
            T I VL  C+++G ++ G+   ++ I     E  I     L+D+  + G L+ A    E
Sbjct: 252 ATIISVLVGCANSGTLSLGKAVHSLAIKS-SFERRINFSNTLLDMYSKCGDLDGALRVFE 310

Query: 478 SMPMRPNFVIWMSLLSGARNHGNKD 502
            M  R N V W S+++G    G  D
Sbjct: 311 KMGER-NVVSWTSMIAGYTRDGRSD 334


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 228/609 (37%), Positives = 352/609 (57%), Gaps = 7/609 (1%)

Query: 88  VLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGL 147
           + +N ++ CYV N+   EA+  F +++     PD+  +  ++     LG +  G+++H  
Sbjct: 331 ISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGREVHAY 390

Query: 148 VFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVA 207
             K     D  + ++L+ MY K   ++   RVFD M  KD VSW  +I  Y +      A
Sbjct: 391 AVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIACYAQSSRYSEA 450

Query: 208 MKLF----DEMPDRDLFSWTCLVDGFSKCGKVEIAREIF-YRMPNR--NLVSWNAMINGY 260
           +  F     E    D      +++  S    + + +++  Y + N   +L+  N +I+ Y
Sbjct: 451 IGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQVHSYAIRNGLLDLILKNRIIDIY 510

Query: 261 MKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLV 320
            + G+V  A  +F+ ++ +D++TW SM+  +  NG   EA+ L   ML   + P+   LV
Sbjct: 511 GECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKMLNAGIQPDSVALV 570

Query: 321 SALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKK 380
             L A+AGL+ L KG+ +H ++++  F V+G + + L+ MYS CGS+  AL VF     K
Sbjct: 571 GILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAVVSSLVDMYSGCGSMNYALKVFDEAKCK 630

Query: 381 KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYF 440
            V  WTAMI   GMHG   QA+ +F +M   G+ P  ++F+ +L ACSH+ LV++G+ Y 
Sbjct: 631 DVVLWTAMINATGMHGHGKQAIYIFKRMLETGVSPDHVSFLALLYACSHSKLVDEGKFYL 690

Query: 441 NMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGN 500
           +MM++ Y ++P  EHY C+VD+L R+G  EEA   I+SMP+ P  V+W +LL   R H N
Sbjct: 691 DMMVSKYKLQPWQEHYACVVDLLGRSGQTEEAYKFIKSMPLEPKSVVWCALLGACRIHKN 750

Query: 501 KDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIE 560
            ++   A + L+++ PD  G YV++SN++A  G+W+ V E+R  M ++G RKDP  S IE
Sbjct: 751 HELAMIATDKLLELEPDNPGNYVLVSNVFAEMGKWNNVKEIRTKMTEQGLRKDPACSWIE 810

Query: 561 HRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELEN 620
               +H F   D SH  +  IH KL+E+  KL+  G   + T  +L    ++EK   L  
Sbjct: 811 IGNTVHTFTARDHSHRDSQAIHLKLAEITEKLRREGQYVEDTSFVLHDVSEEEKIDLLHR 870

Query: 621 HSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKN 680
           HSERLAI+FGLI+  S +P+RI KNLRVC DCH  TKL+S ++ REI+VRD +RFHHF  
Sbjct: 871 HSERLAISFGLISTASGTPLRIAKNLRVCGDCHEFTKLVSKLFEREIVVRDANRFHHFSG 930

Query: 681 GSCSCKDFW 689
           G+CSC DFW
Sbjct: 931 GTCSCGDFW 939



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 138/515 (26%), Positives = 240/515 (46%), Gaps = 33/515 (6%)

Query: 36  ETQQLHALSVKTNLIYHSG---ISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNL 92
           E +QLHA +V T  +       ++++LL +Y       L  A  +FD +    ++  +N 
Sbjct: 73  EGRQLHAHAVATGALGDDDAGFLATKLLFMY--GKCGRLPDAHRLFDGMPAR-TVFSWNA 129

Query: 93  LIKCYVFNQRSHEALTLFCDLLDRFLL----PDNFTLPCVIKGAARLGAIKEGKQIHGLV 148
           LI   + +  + EA+ ++  +     +    PD  TL  V+K     G  + G ++HGL 
Sbjct: 130 LIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEGDGRCGSEVHGLA 189

Query: 149 FKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAM-DDKDLVSWNCLIDGYVKKGEVEVA 207
            K G      V ++LV MYAK G +D   RVF+ M D +D+ SWN  I G V+ G    A
Sbjct: 190 VKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCVQNGMFLEA 249

Query: 208 MKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNL------------VSWNA 255
           + LF  M   D FS    ++ ++  G +++  E+      R L            +  NA
Sbjct: 250 LDLFRRM-QSDGFS----MNSYTTVGVLQVCAELAQLNHGRELHAALLKCGTEFNIQCNA 304

Query: 256 MINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPN 315
           ++  Y + G VDSA  +F ++  +D I+WNSM++ Y  N  + EA++    M+     P+
Sbjct: 305 LLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPD 364

Query: 316 DATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFR 375
            A +VS LSAV  L  L  GR +H+Y VK     D  +   L+ MY KC S+E +  VF 
Sbjct: 365 HACIVSLLSAVGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFD 424

Query: 376 AISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVND 435
            +  K    WT +I         ++A+  F    + G+K   +    +L ACS    ++ 
Sbjct: 425 RMRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISL 484

Query: 436 GRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGA 495
            ++  +  I +  ++  +++   ++DI    G +  A +  E M  + + V W S+++  
Sbjct: 485 LKQVHSYAIRNGLLDLILKNR--IIDIYGECGEVCYALNIFE-MLDKKDIVTWTSMVNCF 541

Query: 496 RNHG--NKDIGEYAANNLIKVAPDTIGCYVVLSNI 528
             +G  ++ +  +       + PD++    +L  I
Sbjct: 542 AENGLLHEAVALFGKMLNAGIQPDSVALVGILGAI 576



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 97/177 (54%), Gaps = 4/177 (2%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +Q+H+ +++  L+    + +R++ +Y +     + YA +IF+ +L    +V +  ++ C+
Sbjct: 486 KQVHSYAIRNGLL-DLILKNRIIDIYGE--CGEVCYALNIFE-MLDKKDIVTWTSMVNCF 541

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
             N   HEA+ LF  +L+  + PD+  L  ++   A L ++ +GK+IHG + +  F  + 
Sbjct: 542 AENGLLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVEG 601

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
            V+SSLV MY+  G ++   +VFD    KD+V W  +I+     G  + A+ +F  M
Sbjct: 602 AVVSSLVDMYSGCGSMNYALKVFDEAKCKDVVLWTAMINATGMHGHGKQAIYIFKRM 658



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 78/184 (42%), Gaps = 8/184 (4%)

Query: 323 LSAVAGLAVLNKGRWMHSYIVKNGFVVD---GVLGTLLIQMYSKCGSIESALTVFRAISK 379
           L  VA    +++GR +H++ V  G + D   G L T L+ MY KCG +  A  +F  +  
Sbjct: 62  LDLVAVRRAVSEGRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDAHRLFDGMPA 121

Query: 380 KKVGHWTAMIVGLGMHGMATQALDLFNKMCR----MGMKPTAITFIGVLNACSHAGLVND 435
           + V  W A+I      G A +A+ ++  M       G  P   T   VL AC   G    
Sbjct: 122 RTVFSWNALIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEGDGRC 181

Query: 436 GRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGA 495
           G     + +   G++ +      LV +  + G L+ A    E M    +   W S +SG 
Sbjct: 182 GSEVHGLAVKS-GLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGC 240

Query: 496 RNHG 499
             +G
Sbjct: 241 VQNG 244


>gi|302780040|ref|XP_002971795.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
 gi|300160927|gb|EFJ27544.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
          Length = 782

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 247/689 (35%), Positives = 399/689 (57%), Gaps = 27/689 (3%)

Query: 19  LPSRLHW----NILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYA 74
           +P+++ +    N    + + K+  ++H   ++        + + L+++Y     N     
Sbjct: 103 MPTKVTYVAILNACASTESLKDGMEIHGQILQQGFEGDVFVGTALINMY-----NKCGSV 157

Query: 75  RSIFD--RILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGA 132
           R  +D  + L+H  +V +  +I   V + +   A  L+  +    ++P+  TL  V    
Sbjct: 158 RGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAY 217

Query: 133 ARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWN 192
                + EGK I+ LV       D  V++S ++M+   G +   RR+F+ M D+D+V+WN
Sbjct: 218 GDPHYLSEGKFIYSLVSSRVMESDVRVMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWN 277

Query: 193 CLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKC-----GKV--EIAREI 241
            +I  YV+      A++LF  +    +     ++  +++ ++       GKV  E+ +E 
Sbjct: 278 IVITFYVQNENFGEAVRLFGRLQQDGIKANDITFVLMLNVYTSLTSLAKGKVIHELVKEA 337

Query: 242 FYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEAL 301
            Y   +R++V   A+++ Y +      A ++F DM  +D+ITW  M   Y  NG   EAL
Sbjct: 338 GY---DRDVVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEAL 394

Query: 302 ELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMY 361
           +L + M +    P  ATLV+ L   A LA L KGR +HS+I++NGF ++ V+ T LI MY
Sbjct: 395 QLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENGFRMEMVVETALINMY 454

Query: 362 SKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFI 421
            KCG +  A +VF  ++K+ +  W +M+     HG   + L LFN+M   G K  A++F+
Sbjct: 455 GKCGKMAEARSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGEKADAVSFV 514

Query: 422 GVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP- 480
            VL+A SH+G V DG +YF  M+ D+ I PT E YGC+VD+L R G ++EA   +  +  
Sbjct: 515 SVLSALSHSGSVTDGYQYFVAMLQDFSITPTPELYGCVVDLLGRAGRIQEAVDIVLKLSG 574

Query: 481 MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSE 540
             P+ ++WM+LL   R H   D  + AA  +++  P   G YVVLSN+YAAAG WD V+ 
Sbjct: 575 CLPDGILWMTLLGACRTHNKTDQAKAAAEQVLERDPSHSGAYVVLSNVYAAAGDWDGVNR 634

Query: 541 VREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPD 600
           +R++M+ RG +K+PG SSIE    +HEF+ GD+SHP+   I+++L  + ++++AAG++PD
Sbjct: 635 MRKLMRSRGVKKEPGRSSIEILNRVHEFLEGDRSHPRRHPIYAELDVLNSEMRAAGYIPD 694

Query: 601 TTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLS 660
           T  +L  +ED++ KE  L  HSERLAIAFGL++    +P+R++KNLRVC+DCH+ TK +S
Sbjct: 695 TKMILHDVEDER-KEDMLFYHSERLAIAFGLMSTPPGTPLRVIKNLRVCSDCHTATKYIS 753

Query: 661 GIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            +  REI+VRD  RFH+FK+G CSCKD+W
Sbjct: 754 KLRGREILVRDTHRFHNFKDGRCSCKDYW 782



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 123/438 (28%), Positives = 213/438 (48%), Gaps = 13/438 (2%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           A+ +F+ IL+   +  +  +I  Y        AL +F  + +  ++P   T   ++   A
Sbjct: 59  AQQVFE-ILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACA 117

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
              ++K+G +IHG + + GF  D FV ++L++MY K G +      F  ++ +D+VSW  
Sbjct: 118 STESLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTA 177

Query: 194 LIDGYVKKGEVEVAMKLFDEMP-DRDLFSWTCLVDGFSKCGKVEIARE-------IFYRM 245
           +I   V+  +  +A  L+  M  D  + +   L   F+  G      E       +  R+
Sbjct: 178 MIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKFIYSLVSSRV 237

Query: 246 PNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLE 305
              ++   N+ +N +  AG +  A  LF+DM  RD++TWN +I  Y  N  F EA+ L  
Sbjct: 238 MESDVRVMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFG 297

Query: 306 TMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCG 365
            +    +  ND T V  L+    L  L KG+ +H  + + G+  D V+ T L+ +Y +C 
Sbjct: 298 RLQQDGIKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDVVVATALMSLYGRCE 357

Query: 366 SIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN 425
           +   A  +F  +  K V  WT M V    +G   +AL LF +M   G +PT+ T + VL+
Sbjct: 358 APGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLD 417

Query: 426 ACSHAGLVNDGRRYFNMMI-NDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPN 484
            C+H   +  GR+  + +I N + +E  +E    L+++  + G + EA+S  E M  R +
Sbjct: 418 TCAHLAALQKGRQIHSHIIENGFRMEMVVE--TALINMYGKCGKMAEARSVFEKMAKR-D 474

Query: 485 FVIWMSLLSGARNHGNKD 502
            ++W S+L     HG  D
Sbjct: 475 ILVWNSMLGAYAQHGYYD 492



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 159/347 (45%), Gaps = 15/347 (4%)

Query: 215 PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNA----MINGYMKAGDVDSAC 270
           PD   F    L+   S    V+  R + + + +R     N     +I  Y + G V  A 
Sbjct: 3   PDTAFF--VALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQ 60

Query: 271 ELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLA 330
           ++F+ +E +D+  W  MI  Y   G +  AL +   M   DV+P   T V+ L+A A   
Sbjct: 61  QVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTE 120

Query: 331 VLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIV 390
            L  G  +H  I++ GF  D  +GT LI MY+KCGS+  A   F+ +  + V  WTAMI 
Sbjct: 121 SLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIA 180

Query: 391 GLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIE 450
               H     A  L+ +M   G+ P  IT   V NA      +++G+  ++ +++   +E
Sbjct: 181 ACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKFIYS-LVSSRVME 239

Query: 451 PTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANN 510
             +      +++    G L +A+   E M  R + V W  +++      N++ GE A   
Sbjct: 240 SDVRVMNSAMNMFGNAGLLGDARRLFEDMVDR-DVVTWNIVITFYVQ--NENFGE-AVRL 295

Query: 511 LIKVAPDTIGC----YVVLSNIYAAAGQWDKVSEVREMMKKRGFRKD 553
             ++  D I      +V++ N+Y +     K   + E++K+ G+ +D
Sbjct: 296 FGRLQQDGIKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRD 342



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 150/314 (47%), Gaps = 8/314 (2%)

Query: 120 PDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRV 179
           PD      +++  +    +  G+++H  V   GF  +  V   L+ MYA+ G +   ++V
Sbjct: 3   PDTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQQV 62

Query: 180 FDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLF-SWTCLVDGFSKCGK---- 234
           F+ ++ KD+ +W  +I  Y ++G+ + A+ +F +M + D+  +    V   + C      
Sbjct: 63  FEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESL 122

Query: 235 ---VEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGY 291
              +EI  +I  +    ++    A+IN Y K G V  A + F  +E RD+++W +MIA  
Sbjct: 123 KDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAAC 182

Query: 292 ELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDG 351
             + +F  A  L   M +  V+PN  TL +  +A      L++G++++S +       D 
Sbjct: 183 VQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKFIYSLVSSRVMESDV 242

Query: 352 VLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRM 411
            +    + M+   G +  A  +F  +  + V  W  +I     +    +A+ LF ++ + 
Sbjct: 243 RVMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQD 302

Query: 412 GMKPTAITFIGVLN 425
           G+K   ITF+ +LN
Sbjct: 303 GIKANDITFVLMLN 316


>gi|357501931|ref|XP_003621254.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355496269|gb|AES77472.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 700

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 238/673 (35%), Positives = 383/673 (56%), Gaps = 30/673 (4%)

Query: 31  SSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLY 90
           SSTH   ++ + + + +           L++LYV    + L  AR +FD  +   S+V Y
Sbjct: 44  SSTHHSYREFNIIQLNS-----------LINLYVK--CSKLRLARYLFDE-MSLRSVVSY 89

Query: 91  NLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFK 150
           N+L+  Y+ +    E + LF +++     P+ +    V+   A  G + EG Q HG +FK
Sbjct: 90  NVLMGGYLHSGEHLEVVKLFKNMVSSLYQPNEYVFTTVLSACAHSGRVFEGMQCHGFLFK 149

Query: 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAM-----DDKDLVSWNCLIDGYVKKGEVE 205
            G  F  FV SSLV MY+K   +DL  +V ++      +D D   +N +++  V+ G + 
Sbjct: 150 FGLVFHHFVKSSLVHMYSKCFHVDLALQVLESEHGNIDNDNDAFCYNSVLNALVESGRLG 209

Query: 206 VAMKLFDEMPDRDLFSWTCL--VDGFSKCGKV-------EIAREIFYRMPNRNLVSWNAM 256
            A+++   M D  +  W  +  V     CG++       ++  ++       ++   + +
Sbjct: 210 EAVEVLGRMVDEGVV-WDSVTYVSVMGLCGQIRDLGLGLQVHAQLLKGGLTFDVFVGSML 268

Query: 257 INGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPND 316
           ++ + K GDV SA ++FD ++ R+++ W S++  Y  NG F E L LL  M     + N+
Sbjct: 269 VDMFGKCGDVLSARKVFDGLQNRNVVVWTSLMTAYLQNGEFEETLNLLSCMDREGTMSNE 328

Query: 317 ATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRA 376
            T    L+A AG+A L  G  +H+ + K G     ++G  LI MYSKCG I+S+  VF  
Sbjct: 329 FTFAVLLNAFAGMAALRHGDLLHARVEKLGIKNRVIVGNALINMYSKCGCIDSSYDVFFD 388

Query: 377 ISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDG 436
           +  + +  W AMI G   HG+  QAL LF  M   G  P  +TF+GVL+AC+H  LVN+G
Sbjct: 389 MRNRDIITWNAMICGYSQHGLGKQALLLFQDMLSAGECPNHVTFVGVLSACAHLALVNEG 448

Query: 437 RRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGAR 496
             Y N ++  + +EP +EHY C+V +LCR G LEEA++ + +  ++ + V W  LL+   
Sbjct: 449 FYYLNQLMKHFKVEPGLEHYTCVVAVLCRAGMLEEAENFMRTTQVKWDVVAWRVLLNACN 508

Query: 497 NHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGS 556
            H N ++G   A  ++++ P  +G Y +LSN+YA A  WD V+ +R+MM++R  +K+PG 
Sbjct: 509 IHRNYNLGTKIAETILQMDPRDMGTYTLLSNMYAKARSWDSVTMIRKMMRERNVKKEPGV 568

Query: 557 SSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEA 616
           S IE R  +H F     +HP+  +I++K+  +   +K  G+VP+   VL  +ED+ +KE+
Sbjct: 569 SWIEIRNAVHVFSSDGSNHPECIQIYNKVQLLLEMIKQLGYVPNIEAVLHDVEDE-QKES 627

Query: 617 ELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFH 676
            L  HSE+LAIA+GL+ + S +PIR++KNLR+C DCH+  KL+S + NR IIVRD SRFH
Sbjct: 628 YLNYHSEKLAIAYGLMKIPSPAPIRVIKNLRICEDCHTAVKLISKVTNRLIIVRDASRFH 687

Query: 677 HFKNGSCSCKDFW 689
           HF++G+C+C D W
Sbjct: 688 HFRDGTCTCTDHW 700


>gi|357112489|ref|XP_003558041.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Brachypodium distachyon]
          Length = 706

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 233/606 (38%), Positives = 357/606 (58%), Gaps = 10/606 (1%)

Query: 85  PSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQI 144
           PS+V +  L++ YV +    +A+ LF  + +R    ++ T   ++ G    G + E +++
Sbjct: 110 PSVVSFTSLLRGYVRHGLLADAIRLFHQMPER----NHVTYTVLLGGFLDAGRVNEARKL 165

Query: 145 HGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEV 204
               F      D    ++++S Y + G I   R +FD M  +++VSW  +I GY + G+V
Sbjct: 166 ----FDEMPDKDVVARTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGKV 221

Query: 205 EVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAG 264
            +A KLF+ MPDR+  SWT ++ G+ + G VE A ++F  MP+  + + NAM+ G+ + G
Sbjct: 222 ILARKLFEVMPDRNEVSWTAMLVGYIQAGHVEDAEDLFNAMPDHPVAACNAMMVGFGQHG 281

Query: 265 DVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS 324
            VD+A  +F+ M  RD  TW++MI  YE N   MEAL     ML   + PN  + +S L+
Sbjct: 282 MVDAAKAMFERMCARDDGTWSAMIKVYEQNEFLMEALSTFREMLCRGIRPNYTSFISILT 341

Query: 325 AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGH 384
             A LA  + GR +H+ +++  F  D    + LI MY KCG+++ A  VF     K V  
Sbjct: 342 VCAALATADYGRELHAAMLRCSFDTDVFAVSALITMYIKCGNLDKAKRVFNMFEPKDVVM 401

Query: 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMI 444
           W +MI G   HG+  +AL +F+ +    M P  IT+IGVL ACS+ G V +GR  FN M 
Sbjct: 402 WNSMITGYAQHGLGEEALGIFDDLRLARMAPDGITYIGVLTACSYTGKVKEGREIFNSMG 461

Query: 445 NDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIG 504
            +  I     HY C+VD+L R G ++EA   I +MP+ P+ +IW +L+   R H N +I 
Sbjct: 462 MNSSIRLGAAHYSCMVDLLGRAGLVDEALDLINNMPVEPDAIIWGALMGACRMHKNAEIA 521

Query: 505 EYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGV 564
           E AA  L+++ P + G YV+LS+IY + G+W+  S++R+ +  R   K PG S IE+  +
Sbjct: 522 EVAAKKLLELEPGSAGPYVLLSHIYTSTGRWEDASDMRKFISSRNLNKSPGCSWIEYNKM 581

Query: 565 LHEFVVGDK-SHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSE 623
           +H F  GD  SHP+   I + L E+   L  +G+  D + VL  + D+++K   L  HSE
Sbjct: 582 VHLFTSGDVLSHPEHAIILNMLEELDGLLMESGYSADGSFVLHDV-DEEQKAQSLRYHSE 640

Query: 624 RLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSC 683
           R A+A+GL+ V +  PIR++KNLRVC DCHS  KL++ I +REII+RD +RFHHFK+G C
Sbjct: 641 RQAVAYGLLKVPAGMPIRVMKNLRVCGDCHSAIKLITKITSREIILRDANRFHHFKDGLC 700

Query: 684 SCKDFW 689
           SC+D+W
Sbjct: 701 SCRDYW 706



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 125/476 (26%), Positives = 212/476 (44%), Gaps = 64/476 (13%)

Query: 118 LLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVL------SSLVSMYAKFG 171
            LP + T P V+   AR+  +     I G        FD   L      ++L++ Y +  
Sbjct: 8   FLPSS-TAPAVVAANARIAWLVRAGNIEGA----RAAFDAMPLRTTASYNALIAGYFRNH 62

Query: 172 EIDLGRRVFDAMDDKDLVSWNCLID---------------------------------GY 198
             D    +F  M  +DL S+N LI                                  GY
Sbjct: 63  LPDAALGLFHRMPSRDLGSYNALIAGLSLRRHTLPDAAAALASIPLPPSVVSFTSLLRGY 122

Query: 199 VKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMIN 258
           V+ G +  A++LF +MP+R+  ++T L+ GF   G+V  AR++F  MP++++V+  AM++
Sbjct: 123 VRHGLLADAIRLFHQMPERNHVTYTVLLGGFLDAGRVNEARKLFDEMPDKDVVARTAMLS 182

Query: 259 GYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDAT 318
           GY +AG +  A  LFD+M  R++++W +MI+GY  NG+ + A +L E M   + +   A 
Sbjct: 183 GYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGKVILARKLFEVMPDRNEVSWTAM 242

Query: 319 LVSALSA--VAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRA 376
           LV  + A  V     L      H     N  +V           + + G +++A  +F  
Sbjct: 243 LVGYIQAGHVEDAEDLFNAMPDHPVAACNAMMVG----------FGQHGMVDAAKAMFER 292

Query: 377 ISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDG 436
           +  +  G W+AMI     +    +AL  F +M   G++P   +FI +L  C+     + G
Sbjct: 293 MCARDDGTWSAMIKVYEQNEFLMEALSTFREMLCRGIRPNYTSFISILTVCAALATADYG 352

Query: 437 RRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGAR 496
           R     M+     +  +     L+ +  + G L++AK    +M    + V+W S+++G  
Sbjct: 353 RELHAAMLR-CSFDTDVFAVSALITMYIKCGNLDKAKRVF-NMFEPKDVVMWNSMITGYA 410

Query: 497 NH--GNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGF 550
            H  G + +G +    L ++APD I    VL+    A     KV E RE+    G 
Sbjct: 411 QHGLGEEALGIFDDLRLARMAPDGITYIGVLT----ACSYTGKVKEGREIFNSMGM 462


>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 247/689 (35%), Positives = 368/689 (53%), Gaps = 89/689 (12%)

Query: 88  VLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEG--KQIH 145
           V YN +I  +  +   H AL LF  +     +PD FT   V+ GA  L A +E   +Q+H
Sbjct: 96  VSYNAMITAFSHSHDGHAALQLFVQMKRLGFVPDPFTFSSVL-GALSLIADEETHCQQLH 154

Query: 146 GLVFKLGFGFDKFVLSSLVSMYAK-------------------FGEIDLGRR-------- 178
             VFK G      VL++L+S Y                     F E   GRR        
Sbjct: 155 CEVFKWGALSVPSVLNALMSCYVSCASSPLVNSCVLMAAARKLFDEAPPGRRDEPAWTTI 214

Query: 179 ---------------VFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP----DRDL 219
                          + + M D   V+WN +I GYV +G  E A  L   M       D 
Sbjct: 215 IAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDE 274

Query: 220 FSWTCLVDG---------------------------------------FSKCGKVEIARE 240
           +++T ++                                         +++CGK+  AR 
Sbjct: 275 YTYTSVISAASNAGLFNIGRQVHAYVLRTVVQPSGHFVLSVNNALITLYTRCGKLVEARR 334

Query: 241 IFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEA 300
           +F +MP ++LVSWNA+++G + A  ++ A  +F +M +R L+TW  MI+G   NG   E 
Sbjct: 335 VFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVRSLLTWTVMISGLAQNGFGEEG 394

Query: 301 LELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQM 360
           L+L   M +  + P D     A+++ + L  L+ G+ +HS I++ G      +G  LI M
Sbjct: 395 LKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNGQQLHSQIIQLGHDSSLSVGNALITM 454

Query: 361 YSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITF 420
           YS+CG +E+A TVF  +       W AMI  L  HG   QA+ L+ KM +  + P  ITF
Sbjct: 455 YSRCGLVEAADTVFLTMPYVDSVSWNAMIAALAQHGHGVQAIQLYEKMLKEDILPDRITF 514

Query: 421 IGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP 480
           + +L+ACSHAGLV +GR YF+ M   YGI P  +HY  L+D+LCR G   EAK+  ESMP
Sbjct: 515 LTILSACSHAGLVKEGRHYFDTMRVCYGITPEEDHYSRLIDLLCRAGMFSEAKNVTESMP 574

Query: 481 MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSE 540
             P   IW +LL+G   HGN ++G  AA+ L+++ P   G Y+ LSN+YAA GQWD+V+ 
Sbjct: 575 FEPGAPIWEALLAGCWIHGNMELGIQAADRLLELMPQQDGTYISLSNMYAALGQWDEVAR 634

Query: 541 VREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPD 600
           VR++M++RG +K+PG S IE   ++H F+V D  HP+   ++  L ++ ++++  G+VPD
Sbjct: 635 VRKLMRERGVKKEPGCSWIEVENMVHVFLVDDAVHPEVHAVYRYLEQLVHEMRKLGYVPD 694

Query: 601 TTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLS 660
           T  VL  +E + +KE  L  HSE+LA+ +G++ +   + IR+ KNLR+C DCH+  K +S
Sbjct: 695 TKFVLHDMESE-QKEYALSTHSEKLAVVYGIMKLPLGATIRVFKNLRICGDCHNAFKYIS 753

Query: 661 GIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            + +REIIVRD  RFHHF+NG CSC ++W
Sbjct: 754 KVVDREIIVRDRKRFHHFRNGECSCSNYW 782



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 112/515 (21%), Positives = 202/515 (39%), Gaps = 123/515 (23%)

Query: 133 ARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWN 192
           A+L      + +H  +   GF     +++ L+  Y K   I   R +FD +   D+V+  
Sbjct: 7   AQLSHTSFARAVHAHILTSGFKPFPLIINRLIDHYCKSFNIPYARYLFDKIPKPDIVAAT 66

Query: 193 CLIDGYVKKGEVEVAMKLFDEMP--DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNL 250
            ++  Y   G +++A +LF+  P   RD  S+  ++  FS       A ++F +M     
Sbjct: 67  TMLSAYSAAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKRLGF 126

Query: 251 VS-------------------------------W---------NAMINGYMKAGD----- 265
           V                                W         NA+++ Y+         
Sbjct: 127 VPDPFTFSSVLGALSLIADEETHCQQLHCEVFKWGALSVPSVLNALMSCYVSCASSPLVN 186

Query: 266 ----VDSACELFDDMEI--RDLITWNSMIAGYELNGRFMEALELLE-----------TML 308
               + +A +LFD+     RD   W ++IAGY  N   + A ELLE            M+
Sbjct: 187 SCVLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMI 246

Query: 309 IG-----------DVLP---------NDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFV 348
            G           D+L          ++ T  S +SA +   + N GR +H+Y+++    
Sbjct: 247 SGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLRTVVQ 306

Query: 349 VDG----VLGTLLIQMYSKCGS-------------------------------IESALTV 373
             G     +   LI +Y++CG                                IE A ++
Sbjct: 307 PSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSI 366

Query: 374 FRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLV 433
           FR +  + +  WT MI GL  +G   + L LFN+M   G++P    + G + +CS  G +
Sbjct: 367 FREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGSL 426

Query: 434 NDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLS 493
           ++G++  + +I   G + ++     L+ +  R G +E A +   +MP   + V W ++++
Sbjct: 427 DNGQQLHSQIIQ-LGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYVDS-VSWNAMIA 484

Query: 494 GARNHGNKDIGEYAANNLIK--VAPDTIGCYVVLS 526
               HG+          ++K  + PD I    +LS
Sbjct: 485 ALAQHGHGVQAIQLYEKMLKEDILPDRITFLTILS 519


>gi|302791503|ref|XP_002977518.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
 gi|300154888|gb|EFJ21522.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
          Length = 652

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 230/642 (35%), Positives = 373/642 (58%), Gaps = 29/642 (4%)

Query: 59  LLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFL 118
           +LS+Y      +L  A+ +FDR+ +  SL  +  L+  +  +    EA TLF  + +R L
Sbjct: 29  MLSIYA--RSGDLSNAKGVFDRMPRW-SLGSWTALLSAFALSGHHEEAKTLFDTMQERDL 85

Query: 119 LPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKF------VLSSLVSMYAKFGE 172
           +     L  +    A    I++ K          + FD+         +++++  A+ G+
Sbjct: 86  IAWTIMLTVL----ATFSNIEDAK----------YHFDQMPERDLVAWTAMLAANAERGQ 131

Query: 173 IDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKC 232
           ++  R  FD M +++L SW  L+  Y + G+V+ A ++FD MP+ +L +WT ++ G+S  
Sbjct: 132 MENARETFDQMPERNLFSWTSLLSAYGRSGDVKAAGRVFDSMPEWNLVAWTAMLTGYSLS 191

Query: 233 GKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYE 292
           G V  A+  F  MP R+L++W AM++ Y   G +    E+F  M  RDLI+W +M+A   
Sbjct: 192 GDVVRAKRAFDSMPERDLIAWTAMLSAYAFNGHLRYTREIFQRMPERDLISWATMVAALV 251

Query: 293 LNGRFMEALELLETM-----LIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGF 347
            N    E+ EL + M     L   + PN  T ++ L A + L  L +GR +H+ + + GF
Sbjct: 252 ENDLLEESKELFDRMPRHCALSKGMTPNRVTFITLLDACSFLGALAEGRKIHAAVAERGF 311

Query: 348 VVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNK 407
             D V+   L+  Y +CG++  A  VF  + ++ V  W++MI      G   +A++L+++
Sbjct: 312 DTDLVVSNALVNFYGRCGALGDAKIVFDGMRRRDVISWSSMISAFAQRGRVDEAMELYHR 371

Query: 408 MCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTG 467
           M   G  P  I FI VL ACS++G+V     +F  ++ D  +EPT+EHY C+VD+L R G
Sbjct: 372 MLSEGTLPDDIIFISVLFACSNSGVVEASGDFFRSIVGDTQVEPTLEHYACMVDVLGRAG 431

Query: 468 YLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSN 527
            L +A+  +  MP  P  +++M++LS  + + + + GE AA  + ++ P+    Y+ L+N
Sbjct: 432 KLRDAEDLLRLMPFHPGPLLYMTMLSACKLYTDVERGEAAAEVVFELDPENSSPYITLAN 491

Query: 528 IYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSE 587
           IY+AA +    + +R++M++RG +K PG S IE    +HEF+ GDK HPQ DEI++++  
Sbjct: 492 IYSAAKRPKDAARIRKLMEERGIKKKPGCSWIEVLDRVHEFIAGDKMHPQRDEIYAEIQR 551

Query: 588 MRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLR 647
           +  ++K AG+  DT  VL  +E + EKE  L  HSE+LAIAFGLI+    +P+RIVKNLR
Sbjct: 552 LGRQMKEAGYFQDTKVVLQDVE-EDEKENLLWYHSEKLAIAFGLISTPPGAPLRIVKNLR 610

Query: 648 VCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           VC+DCH+ TK++S +  REI+VRD +RFHHF+NG CSC D+W
Sbjct: 611 VCSDCHAATKVISKVTGREILVRDTNRFHHFQNGMCSCNDYW 652



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 103/374 (27%), Positives = 184/374 (49%), Gaps = 19/374 (5%)

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
           RLG ++  +QI   +       D F    ++S+YA+ G++   + VFD M    L SW  
Sbjct: 4   RLGCVERARQIFDAIADR----DSFSWGIMLSIYARSGDLSNAKGVFDRMPRWSLGSWTA 59

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSW 253
           L+  +   G  E A  LFD M +RDL +WT ++   +    +E A+  F +MP R+LV+W
Sbjct: 60  LLSAFALSGHHEEAKTLFDTMQERDLIAWTIMLTVLATFSNIEDAKYHFDQMPERDLVAW 119

Query: 254 NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL 313
            AM+    + G +++A E FD M  R+L +W S+++ Y  +G    A  + ++M   +++
Sbjct: 120 TAMLAANAERGQMENARETFDQMPERNLFSWTSLLSAYGRSGDVKAAGRVFDSMPEWNLV 179

Query: 314 PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTV 373
              A L     +++G  V  K R   S   +     D +  T ++  Y+  G +     +
Sbjct: 180 AWTAMLTG--YSLSGDVVRAK-RAFDSMPER-----DLIAWTAMLSAYAFNGHLRYTREI 231

Query: 374 FRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCR-----MGMKPTAITFIGVLNACS 428
           F+ + ++ +  W  M+  L  + +  ++ +LF++M R      GM P  +TFI +L+ACS
Sbjct: 232 FQRMPERDLISWATMVAALVENDLLEESKELFDRMPRHCALSKGMTPNRVTFITLLDACS 291

Query: 429 HAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIW 488
             G + +GR+  +  + + G +  +     LV+   R G L +AK   + M  R + + W
Sbjct: 292 FLGALAEGRK-IHAAVAERGFDTDLVVSNALVNFYGRCGALGDAKIVFDGM-RRRDVISW 349

Query: 489 MSLLSGARNHGNKD 502
            S++S     G  D
Sbjct: 350 SSMISAFAQRGRVD 363


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 257/727 (35%), Positives = 385/727 (52%), Gaps = 55/727 (7%)

Query: 4   QTLQHSSPIHALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLY 63
           +TL H  P H L   L +         +  H   +++   +   NL  ++ + S L    
Sbjct: 33  RTLPHPPPTHLLNHLLTA------YGKAGRHARARRVFDATPHPNLFTYNALLSTL---- 82

Query: 64  VDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL--DRFLLPD 121
              H   L    S+F  + Q  + V YN +I  +        A+ L+  LL     + P 
Sbjct: 83  --AHARLLDDMDSLFASMAQRDT-VSYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPS 139

Query: 122 NFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFD 181
             T+  ++  A+ LG    G+Q H  + +LGFG + FV S LV MYAK G I   +RVFD
Sbjct: 140 RITMSAMVMAASALGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFD 199

Query: 182 AMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREI 241
            MD K++V +N +I G ++   VE A +LF+ M DRD  +WT +V GF++ G    A   
Sbjct: 200 EMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNF 259

Query: 242 FYRMP---------------------------------------NRNLVSWNAMINGYMK 262
           F RM                                        + N+   +A+++ Y K
Sbjct: 260 FRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSK 319

Query: 263 AGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSA 322
              +  A   F  M  +++I+W ++I GY  NG   EA+ +   M    + P+D TL S 
Sbjct: 320 CRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSV 379

Query: 323 LSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKV 382
           +S+ A LA L +G   H   + +G +    +   L+ +Y KCGSIE A  +F  +     
Sbjct: 380 ISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQ 439

Query: 383 GHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNM 442
             WTA++ G    G A + +DLF KM    +KP  +TFIGVL+ACS AG V  G  YF+ 
Sbjct: 440 VSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVLSACSRAGFVEKGCSYFHS 499

Query: 443 MINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKD 502
           M  D+GI P  +HY C++D+  R+G L+EA+  I+ MPM P+ + W +LLS  R  G+ +
Sbjct: 500 MQKDHGIVPIDDHYTCMIDLYSRSGRLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDME 559

Query: 503 IGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHR 562
           IG++AA NL+++ P     YV+L +++A  G W++V+++R  M+ R  +K+PG S I+++
Sbjct: 560 IGQWAAENLLEIDPQNPASYVLLCSMHATKGNWNQVAQLRRGMRDRQVKKEPGCSWIKYK 619

Query: 563 GVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHS 622
             +H F   D+SHP +  I+ KL  + +K+   G+ PD + VL  + D  +K   + +HS
Sbjct: 620 NKVHIFSADDQSHPFSKGIYEKLEWLNSKMLEEGYKPDVSSVLHDVAD-TDKVHMVSHHS 678

Query: 623 ERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGS 682
           E+LAIAFGL+ V    PIRIVKNLRVC DCH+ TKL+S I  R+I+VRD  RFH F NG 
Sbjct: 679 EKLAIAFGLMFVPHEMPIRIVKNLRVCVDCHNATKLISKITGRDILVRDAVRFHKFSNGV 738

Query: 683 CSCKDFW 689
           CSC DFW
Sbjct: 739 CSCGDFW 745


>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1217

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 249/697 (35%), Positives = 384/697 (55%), Gaps = 48/697 (6%)

Query: 2   QTQTLQHSSPIHAL-QQHLPSRLHWNILKFSSTHKETQQL---HALSVKTNLIYHSGISS 57
           QT+ +  S P   L Q++ P    + + +   T+ + + L   H+  +  +L Y+S +  
Sbjct: 20  QTRKVTSSVPKLELDQKNSPKETAFMLGQVLDTYPDLKTLRTVHSRIISEDLRYNSSLGV 79

Query: 58  RLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRF 117
           +L+  Y    + ++  AR +FD I +  ++++ N++I+ YV N    E + +F  +    
Sbjct: 80  KLMRAYAS--LKDVATARKVFDEIPER-NVIIINVMIRSYVNNGFYREGIQVFGTMCSCH 136

Query: 118 LLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGR 177
           + PD++T PCV+K  +  G I  GK+IHG   K+G     FV + LVSMY K G +   R
Sbjct: 137 VKPDHYTFPCVLKACSCSGNIVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEAR 196

Query: 178 RVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEI 237
            V D                               EM  RD+ SW  LV G+++  + + 
Sbjct: 197 LVLD-------------------------------EMSRRDVVSWNSLVAGYAQNQRFDD 225

Query: 238 AREIFYRMPNRNLVSWNAMINGYMKA------GDVDSACELFDDMEIRDLITWNSMIAGY 291
           A E+   M +  +      +   + A       +V    ++F  M  + L++WN MI  Y
Sbjct: 226 ALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVY 285

Query: 292 ELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDG 351
             N   +EA+EL   M      P+  ++ S L A    + L+ G+ +H YI +   + + 
Sbjct: 286 MKNAMPVEAVELYSGMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNL 345

Query: 352 VLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRM 411
           +L   LI MY+KCG ++ A  VF  +  + V  WTAMI   G  G    A+ LF+KM   
Sbjct: 346 LLENALIDMYAKCGCLDRARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKMQDS 405

Query: 412 GMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEE 471
           G+ P +I F+  L ACSHAGL+ +GR  F +M + Y I P +EH  C+VD+L R G ++E
Sbjct: 406 GLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKE 465

Query: 472 AKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAA 531
           A   I+ MPM PN  +W +LL   R H N DIG  AA+ L ++AP+  G YV+LSNIYA 
Sbjct: 466 AYKFIQEMPMEPNERVWGALLGACRVHSNTDIGLLAADKLFQLAPEQSGYYVLLSNIYAK 525

Query: 532 AGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNK 591
           AG+W++V+ +R +MK +G +K+PG+S++E   ++H F+VGD+SHPQ+ EI+ +L  +  K
Sbjct: 526 AGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSAEIYRELDVLVKK 585

Query: 592 LKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVK---SRSPIRIVKNLRV 648
           +K  G+VPD+   L  +E++ +KE  L  HSE+LAI F L+N +   S + IRI KNLR+
Sbjct: 586 MKELGYVPDSESALHDVEEE-DKETHLAVHSEKLAIVFALMNTEEEDSNNAIRITKNLRI 644

Query: 649 CNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSC 685
           C DCH   KL+S I +REII+RD +RFH F+ G CSC
Sbjct: 645 CGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSC 681


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 243/666 (36%), Positives = 388/666 (58%), Gaps = 24/666 (3%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           QQ+H +++K  L     +S+ L+++Y    +  +  AR++F+ + +   L+ +N +I   
Sbjct: 342 QQVHCMALKLGLDLMLTVSNSLINMYC--KLRKIGLARTVFNNMSER-DLISWNSVIAGI 398

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLG-AIKEGKQIHGLVFKLGFGFD 156
             +    EA+ LF  LL   L PD++T+  V+K A+ L   +   KQIH    K     D
Sbjct: 399 AQSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVAD 458

Query: 157 KFVLSSLVSMYA-----KFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLF 211
            FV ++L+  Y+     K  E+  GR  FD      LV+WN ++ GY +  +    ++LF
Sbjct: 459 SFVSTALIDAYSRNRCMKEAEVLFGRNNFD------LVAWNAMMSGYTQSHDGHKTLELF 512

Query: 212 DEMPDR----DLFSWTCLVDGFSKCGKVEIAREI--FYRMPNRNLVSW--NAMINGYMKA 263
             M  +    D F+   ++        +   +++  +      +L  W  + +++ Y+K 
Sbjct: 513 ALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKC 572

Query: 264 GDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSAL 323
           GD+ +A   FD + + D + W ++I+G   NG    AL +   M +  VLP++ T+ +  
Sbjct: 573 GDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLA 632

Query: 324 SAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVG 383
            A + L  L +GR +H+  +K     D  +GT L+ MY+KCGSI+ A  +F+ I    + 
Sbjct: 633 KASSCLTALEQGRQIHANALKLNCTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNIT 692

Query: 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMM 443
            W AM+VGL  HG   +AL LF +M  +G+KP  +TFIGVL+ACSH+GLV++  +Y   M
Sbjct: 693 AWNAMLVGLAQHGEGKEALQLFKQMESLGIKPDKVTFIGVLSACSHSGLVSEAYKYIRSM 752

Query: 444 INDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDI 503
             DYGI+P IEHY CL D L R G ++EA++ I+SM M  +  ++ +LL+  R  G+ + 
Sbjct: 753 HRDYGIKPEIEHYSCLADALGRAGLVKEAENLIDSMSMEASASMYRTLLAACRVQGDTET 812

Query: 504 GEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRG 563
           G+  A  L+++ P     YV+LSN+YAAA +WD++   R MMK    +KDPG S IE + 
Sbjct: 813 GKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKN 872

Query: 564 VLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSE 623
            +H FVV D+S+PQT+ I+ K+ +M   +K  G+VP+T   L+ +E++ EKE  L  HSE
Sbjct: 873 KIHLFVVDDRSNPQTELIYKKVKDMIRDIKQEGYVPETDFTLVDVEEE-EKERALYYHSE 931

Query: 624 RLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSC 683
           +LA+AFGL++    +PIR++KNLRVC DCH+  K +S +Y+REI++RD +RFH FK+G C
Sbjct: 932 KLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYISKVYDREIVLRDANRFHRFKDGIC 991

Query: 684 SCKDFW 689
           SC D+W
Sbjct: 992 SCGDYW 997



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 131/521 (25%), Positives = 229/521 (43%), Gaps = 85/521 (16%)

Query: 91  NLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFK 150
           N ++  Y+   +    L  F D+++  L  D  T   V+  A RL ++  G+Q+H +  K
Sbjct: 291 NKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVHCMALK 350

Query: 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEV-AMK 209
           LG      V +SL++MY K  +I L R VF+ M ++DL+SWN +I G + + ++EV A+ 
Sbjct: 351 LGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAG-IAQSDLEVEAVC 409

Query: 210 LFDEM------PDR----------------------------------DLFSWTCLVDGF 229
           LF ++      PD                                   D F  T L+D +
Sbjct: 410 LFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFVSTALIDAY 469

Query: 230 SKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIA 289
           S+   ++ A  +F R  N +LV+WNAM++GY ++ D     ELF  M             
Sbjct: 470 SRNRCMKEAEVLFGR-NNFDLVAWNAMMSGYTQSHDGHKTLELFALM------------- 515

Query: 290 GYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVV 349
            ++   R                  +D TL + L     L  +N+G+ +H+Y +K+G+ +
Sbjct: 516 -HKQGER-----------------SDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDL 557

Query: 350 DGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMC 409
           D  + + ++ MY KCG + +A   F +I       WT +I G   +G   +AL +F++M 
Sbjct: 558 DLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEERALHVFSQMR 617

Query: 410 RMGMKPTAITFIGVLNACSHAGLVNDGRR-YFNMMINDYGIEPTIEHYGCLVDILCRTGY 468
            MG+ P   T   +  A S    +  GR+ + N +  +   +P +     LVD+  + G 
Sbjct: 618 LMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTSDPFVG--TSLVDMYAKCGS 675

Query: 469 LEEAKSTIESMPMRPNFVIWMSLLSGARNH--GNKDIGEYAANNLIKVAPDTIGCYVVLS 526
           +++A    + + M  N   W ++L G   H  G + +  +     + + PD +    VLS
Sbjct: 676 IDDAYCLFKRIEMM-NITAWNAMLVGLAQHGEGKEALQLFKQMESLGIKPDKVTFIGVLS 734

Query: 527 NIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHE 567
               +    +    +R M +  G + +     IEH   L +
Sbjct: 735 ACSHSGLVSEAYKYIRSMHRDYGIKPE-----IEHYSCLAD 770



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 116/440 (26%), Positives = 200/440 (45%), Gaps = 56/440 (12%)

Query: 26  NILKFSSTHKE----TQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRI 81
           ++LK +S+  E    ++Q+H  ++KTN +  S +S+ L+  Y       +  A  +F R 
Sbjct: 428 SVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFVSTALIDAYSRNRC--MKEAEVLFGR- 484

Query: 82  LQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEG 141
             +  LV +N ++  Y  +   H+ L LF  +  +    D+FTL  V+K    L AI +G
Sbjct: 485 -NNFDLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQG 543

Query: 142 KQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKK 201
           KQ+H    K G+  D +V S ++ MY K G++   +  FD++   D V+W  LI G ++ 
Sbjct: 544 KQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIEN 603

Query: 202 GEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS--- 252
           GE E A+ +F +M      PD   F+   L    S    +E  R+I       N  S   
Sbjct: 604 GEEERALHVFSQMRLMGVLPDE--FTIATLAKASSCLTALEQGRQIHANALKLNCTSDPF 661

Query: 253 -WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGD 311
              ++++ Y K G +D A  LF  +E+ ++  WN+M+ G   +G   EAL+L + M    
Sbjct: 662 VGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKEALQLFKQMESLG 721

Query: 312 VLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESAL 371
           + P+  T +  LSA +           HS +V   +         +  M+   G      
Sbjct: 722 IKPDKVTFIGVLSACS-----------HSGLVSEAY-------KYIRSMHRDYG------ 757

Query: 372 TVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAG 431
                  K ++ H++ +   LG  G+  +A +L +    M M+ +A  +  +L AC   G
Sbjct: 758 ------IKPEIEHYSCLADALGRAGLVKEAENLIDS---MSMEASASMYRTLLAACRVQG 808

Query: 432 LVNDGRRYFNMMINDYGIEP 451
               G+R    ++    +EP
Sbjct: 809 DTETGKRVATKLLE---LEP 825



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 121/461 (26%), Positives = 209/461 (45%), Gaps = 46/461 (9%)

Query: 59  LLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFN-----QRSHEALTLFCDL 113
           L+S+Y      +L YAR +FD++ +   LV +N ++  Y  +     +   EA  LF  L
Sbjct: 87  LISMY--SKCGSLTYARRVFDKMPER-DLVSWNSILAAYAQSSEGVVENVKEAFLLFRIL 143

Query: 114 LDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEI 173
               +     TL  ++K     G +   +  HG   K+G   D FV  +LV++Y KFG++
Sbjct: 144 RQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKIGLDGDDFVAGALVNIYLKFGKV 203

Query: 174 DLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCG 233
             GR +F+ M  +D+V WN ++  Y++ G  E A+ L        L              
Sbjct: 204 KEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHTSGLH------------- 250

Query: 234 KVEIAREIFYRMPNRNLVSWNAMING-YMKAGDVDSACELFDDMEIRDLITWNSMIAGYE 292
                 EI  R+ +R        I+G   +AG V S     D   + ++I+ N +++GY 
Sbjct: 251 ----PNEITLRLLSR--------ISGDDSEAGQVKSFENGNDASAVSEIISRNKILSGYL 298

Query: 293 LNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV 352
             G++   L+    M+  D+  +  T +  L+    L  L  G+ +H   +K G  +   
Sbjct: 299 HAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVHCMALKLGLDLMLT 358

Query: 353 LGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG 412
           +   LI MY K   I  A TVF  +S++ +  W ++I G+    +  +A+ LF ++ R G
Sbjct: 359 VSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCG 418

Query: 413 MKPTAITFIGVLNACSH--AGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLE 470
           +KP   T   VL A S    GL    + + + +  +   +  +     L+D   R   ++
Sbjct: 419 LKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFVS--TALIDAYSRNRCMK 476

Query: 471 EAKSTIESMPMRPNF--VIWMSLLSG-ARNH-GNKDIGEYA 507
           EA    E +  R NF  V W +++SG  ++H G+K +  +A
Sbjct: 477 EA----EVLFGRNNFDLVAWNAMMSGYTQSHDGHKTLELFA 513



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 82/182 (45%), Gaps = 11/182 (6%)

Query: 246 PNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGR-FMEALELL 304
           P R LV  N +I+ Y K G +  A  +FD M  RDL++WNS++A Y  +    +E ++  
Sbjct: 79  PERFLV--NNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYAQSSEGVVENVK-- 134

Query: 305 ETMLIGDVLPNDATLVSALSAVAGLAV-LNKG-----RWMHSYIVKNGFVVDGVLGTLLI 358
           E  L+  +L  D    S ++    L + L+ G        H Y  K G   D  +   L+
Sbjct: 135 EAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKIGLDGDDFVAGALV 194

Query: 359 QMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI 418
            +Y K G ++    +F  +  + V  W  M+      G   +A+DL +     G+ P  I
Sbjct: 195 NIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHTSGLHPNEI 254

Query: 419 TF 420
           T 
Sbjct: 255 TL 256


>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Vitis vinifera]
          Length = 615

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 247/660 (37%), Positives = 371/660 (56%), Gaps = 66/660 (10%)

Query: 32  STHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYN 91
           +T +E +Q+H   +   L+    +  + ++     + NNLHY+  + D   Q+P+L  +N
Sbjct: 20  TTLRELKQIHTQLLINGLLNDPQLVGQFVASIALNNPNNLHYSNQVLDNS-QNPTLFTFN 78

Query: 92  LLIKCYVFNQRSHEALTLFCDLLDR--FLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVF 149
            +I+ +  +   H +   +  +L    +L PDN+T   +++ +A+L A   G        
Sbjct: 79  SMIRAHSKSSTPHRSFHFYSRILHSAGYLAPDNYTFTFLVRTSAQLLAHGTG-------- 130

Query: 150 KLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMK 209
                      SS+     K+G        F+              D +V+ G       
Sbjct: 131 -----------SSVHGAAVKYG--------FE-------------YDPHVQSG------- 151

Query: 210 LFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSA 269
                          L+  +++ G ++    +F  +   +LV   AM++   K GDV  A
Sbjct: 152 ---------------LIYMYAELGGLDACHRVFSSICEPDLVCQTAMVSACAKMGDVGFA 196

Query: 270 CELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGL 329
            +LFD M  +D I WN+MI+GY   G+  EAL L   M    V  N+ ++VS LSA + L
Sbjct: 197 RKLFDKMSHKDPIAWNAMISGYVQCGQSREALSLFNLMQREGVKVNEVSMVSVLSACSHL 256

Query: 330 AVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMI 389
             L++GRW H+YI +N   +   LGT LI MY+KCG++  A+ VF  + +K V  W++ I
Sbjct: 257 GALDQGRWAHAYIERNKLRMTLTLGTALIDMYAKCGNMNKAMEVFWGMKEKNVYTWSSAI 316

Query: 390 VGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGI 449
            GL M+G   + L+LF+ M +  ++P  ITF+ VL  CS  GLV +GR++F  M   YGI
Sbjct: 317 GGLAMNGAGEKCLELFSLMKQDSVQPNEITFVSVLRGCSVVGLVEEGRKHFESMSKVYGI 376

Query: 450 EPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAAN 509
           EP +EHYGC+VD+  R G+L+EA + I SMP+RP+   W +LL+  + + N ++GE A+ 
Sbjct: 377 EPRLEHYGCMVDLYGRAGHLDEALNFINSMPVRPHVGAWGALLNACKIYRNMEMGELASR 436

Query: 510 NLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFV 569
            ++++     G YV+LSNIYA +  WD+VS VR+ M  +G RK PG S IE  G +HEF 
Sbjct: 437 KIVELEAKNHGAYVLLSNIYADSKDWDRVSNVRQTMNVKGVRKQPGCSVIEVGGEVHEFF 496

Query: 570 VGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAF 629
           VGDKSHP+  EI   L E+  +LK +G+V +T  V   IE++ EKE  L  HSE++AIAF
Sbjct: 497 VGDKSHPRYAEIQVMLGEISRRLKLSGYVANTNPVFFDIEEE-EKEDALCMHSEKIAIAF 555

Query: 630 GLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           GLI++    PIRIVKNLRVC DCH  TK++S  +NREI+VRD +RFHHF++G CSCK +W
Sbjct: 556 GLISLSPDVPIRIVKNLRVCWDCHDATKMISKAFNREIVVRDRNRFHHFRDGECSCKGYW 615


>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
 gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
          Length = 569

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 223/534 (41%), Positives = 326/534 (61%), Gaps = 1/534 (0%)

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP 215
           D    ++++S Y +   ++  +  F+ M  KD  SWN +I G+ +  +++ A  LF  MP
Sbjct: 37  DAVSYNTMLSCYVRNSNMERAQAFFEDMPIKDTPSWNTMITGFAQNQQMDKARDLFLIMP 96

Query: 216 DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDD 275
            +++ +W  ++ G+ +CG ++ A ++F + P +++V+W AMI GYMK G +  A  LF+ 
Sbjct: 97  TKNVVTWNAMISGYVECGDLDSALKLFEKAPFKSVVAWTAMITGYMKLGRIGLAERLFEK 156

Query: 276 MEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKG 335
           M  ++L+TWN+MIAGY  N R  + ++L  TM+   + PN +TL SAL   + L+ L  G
Sbjct: 157 MPEKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGFGIQPNSSTLSSALLGCSELSALQLG 216

Query: 336 RWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMH 395
           R +H  + K+    D   GT LI MY KCG +E    +F  + ++ V  W AMI G   H
Sbjct: 217 RQVHQLVCKSPLCDDTTAGTSLISMYCKCGVLEDGWKLFVQVPRRDVVTWNAMISGYAQH 276

Query: 396 GMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEH 455
           G   +AL LF++M   GMKP  ITF+ VL AC+HAG  + G +YF+ M  DYG+    +H
Sbjct: 277 GEGKKALGLFDEMIEKGMKPDWITFVAVLMACNHAGFTDLGVKYFHSMAKDYGLVAKPDH 336

Query: 456 YGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVA 515
           Y C+VD+L R G L EA   IE MP +P+  ++ +LL   R H N ++ E+A+  L+ + 
Sbjct: 337 YTCMVDLLGRAGKLVEAVDLIEKMPFKPHAAVFGTLLGACRIHKNTEMAEFASQKLLNLD 396

Query: 516 PDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSH 575
           P +   YV L+N+YAA  +WD V+ VR+ MK     K PG S IE + + H+F  GDK H
Sbjct: 397 PASATGYVQLANVYAATKRWDHVARVRKSMKSCKVVKTPGYSWIEVKSMAHQFRSGDKFH 456

Query: 576 PQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVK 635
           P+   IH KL E+  K+K AG+VPD    L  + ++ +KE  L  HSE+LAIA+GLI + 
Sbjct: 457 PELASIHGKLKELEKKMKLAGYVPDLEFALHDVGEE-QKEQLLLWHSEKLAIAYGLIKLP 515

Query: 636 SRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
             +PIR+ KNLRVC DCH   K +S I  REIIVRD +RFHHFK+G CSC D+W
Sbjct: 516 PGTPIRVFKNLRVCGDCHRAIKYISQIERREIIVRDTTRFHHFKDGHCSCADYW 569



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 145/315 (46%), Gaps = 13/315 (4%)

Query: 214 MPDRDLFSWTCLVDGFSKC-GKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACEL 272
           M  +   +W  ++ G SK  GK++ A+E+F ++P  + VS+N M++ Y++  +++ A   
Sbjct: 1   MTLKTTVTWNSVLAGMSKKRGKLKEAQELFVKIPEPDAVSYNTMLSCYVRNSNMERAQAF 60

Query: 273 FDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVL 332
           F+DM I+D  +WN+MI G+  N +  +A +L   M   +V+  +A ++S       L   
Sbjct: 61  FEDMPIKDTPSWNTMITGFAQNQQMDKARDLFLIMPTKNVVTWNA-MISGYVECGDLDSA 119

Query: 333 NKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGL 392
            K       + +       V  T +I  Y K G I  A  +F  + +K +  W AMI G 
Sbjct: 120 LK-------LFEKAPFKSVVAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGY 172

Query: 393 GMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT 452
             +  A   + LF  M   G++P + T    L  CS    +  GR+   ++      + T
Sbjct: 173 IENHRAEDGVKLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDT 232

Query: 453 IEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNH--GNKDIGEYAANN 510
                 L+ + C+ G LE+       +P R + V W +++SG   H  G K +G +    
Sbjct: 233 TAGTS-LISMYCKCGVLEDGWKLFVQVPRR-DVVTWNAMISGYAQHGEGKKALGLFDEMI 290

Query: 511 LIKVAPDTIGCYVVL 525
              + PD I    VL
Sbjct: 291 EKGMKPDWITFVAVL 305



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 116/215 (53%), Gaps = 10/215 (4%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           A  +F+++ +  +LV +N +I  Y+ N R+ + + LF  ++   + P++ TL   + G +
Sbjct: 150 AERLFEKMPEK-NLVTWNAMIAGYIENHRAEDGVKLFRTMVGFGIQPNSSTLSSALLGCS 208

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
            L A++ G+Q+H LV K     D    +SL+SMY K G ++ G ++F  +  +D+V+WN 
Sbjct: 209 ELSALQLGRQVHQLVCKSPLCDDTTAGTSLISMYCKCGVLEDGWKLFVQVPRRDVVTWNA 268

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDRDLFS-WTCLVDGFSKC---GKVEIAREIFYRMP-NR 248
           +I GY + GE + A+ LFDEM ++ +   W   V     C   G  ++  + F+ M  + 
Sbjct: 269 MISGYAQHGEGKKALGLFDEMIEKGMKPDWITFVAVLMACNHAGFTDLGVKYFHSMAKDY 328

Query: 249 NLVS----WNAMINGYMKAGDVDSACELFDDMEIR 279
            LV+    +  M++   +AG +  A +L + M  +
Sbjct: 329 GLVAKPDHYTCMVDLLGRAGKLVEAVDLIEKMPFK 363


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 242/625 (38%), Positives = 366/625 (58%), Gaps = 31/625 (4%)

Query: 80  RILQHPSLVLYNLLIKCYVFN-QRSHEALTLFCDLLDRF-LLPDNFTLPCVIKGAARLGA 137
           R +  PS ++      C+ ++  R+  A+    D ++R  +  D  T   +IK  +  GA
Sbjct: 15  RYVADPSPLVNEFANFCHQWDLHRAMRAM----DAMERHGVFADAITYSELIKCCSARGA 70

Query: 138 IKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDG 197
           ++EGK++H  +F  G+    FV+++L++MY KF  ++    +FD M ++++VSW  +I  
Sbjct: 71  VQEGKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISA 130

Query: 198 YVKK---GEVEVAMKLFDEMPDRDLFSWTCLV---DGFSK-----CG--KVEIAREIFYR 244
           Y  K     ++  + +F E    ++F+++ ++   DG        CG  K  +  ++F R
Sbjct: 131 YSNKLNDKALKCLILMFREGVRPNMFTYSSVLRACDGLPNLRQLHCGIIKTGLESDVFVR 190

Query: 245 MPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELL 304
                    +A+I+ Y K  D+D+A  +FD+M  RDL+ WNS+I G+  N    EAL L 
Sbjct: 191 ---------SALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLF 241

Query: 305 ETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKC 364
           + M     L + ATL S L A  GLA+L  GR +H +++K  F  D +L   LI MY KC
Sbjct: 242 KRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHVLK--FDQDLILNNALIDMYCKC 299

Query: 365 GSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVL 424
           GS+E A + F  + +K V  W+ M+ GL  +G + QAL+LF  M   G +P  IT +GVL
Sbjct: 300 GSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFESMKESGSRPNYITVLGVL 359

Query: 425 NACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPN 484
            ACSHAGLV  G  YF  M   +G++P  EHYGCL+D+L R G L+EA   I  M   P+
Sbjct: 360 FACSHAGLVEKGWYYFRSMKKLFGVDPGREHYGCLIDLLGRAGRLDEAVKLIHEMECEPD 419

Query: 485 FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREM 544
            V W +LL   R H N D+  YAA  +I++ P+  G Y++LSNIYA   +W+ V+EVR+ 
Sbjct: 420 SVTWRTLLGACRVHRNVDLAIYAAKKIIELEPEDAGTYILLSNIYANTQRWEDVAEVRKT 479

Query: 545 MKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQV 604
           M  RG RK PG S IE    +H F++GD SHP+ +EI  +L+++  ++   G+VPDT  V
Sbjct: 480 MTNRGIRKTPGCSWIEVDKQIHVFILGDTSHPKIEEIVQRLNDLIERVMGVGYVPDTNFV 539

Query: 605 LLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYN 664
           L  +E + +KE  L  HSE+LAI FGL+N+     +RI KNLR+C DCH   K++S + +
Sbjct: 540 LQDLEGE-QKEDSLRYHSEKLAIMFGLMNLSREKTVRIRKNLRICGDCHVFAKVVSRMEH 598

Query: 665 REIIVRDNSRFHHFKNGSCSCKDFW 689
           R I++RD  R+HHF++G CSC D+W
Sbjct: 599 RSIVIRDPIRYHHFQDGVCSCGDYW 623



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 146/330 (44%), Gaps = 25/330 (7%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +QLH   +KT L     + S L+ +Y     ++L  A  +FD +     LV++N +I  +
Sbjct: 172 RQLHCGIIKTGLESDVFVRSALIDVY--SKWSDLDNALGVFDEMPTR-DLVVWNSIIGGF 228

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
             N   +EAL LF  +     L D  TL  V++    L  ++ G+Q+H  V K  F  D 
Sbjct: 229 AQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHVLK--FDQDL 286

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
            + ++L+ MY K G ++     F  M +KD++SW+ ++ G  + G    A++LF+ M + 
Sbjct: 287 ILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFESMKES 346

Query: 218 ----DLFSWTCLVDGFSKCGKVEIAREIFYRM-------PNRNLVSWNAMINGYMKAGDV 266
               +  +   ++   S  G VE     F  M       P R    +  +I+   +AG +
Sbjct: 347 GSRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGRE--HYGCLIDLLGRAGRL 404

Query: 267 DSACELFDDMEIR-DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSA 325
           D A +L  +ME   D +TW +++    ++      L +     I ++ P DA     LS 
Sbjct: 405 DEAVKLIHEMECEPDSVTWRTLLGACRVHRNV--DLAIYAAKKIIELEPEDAGTYILLSN 462

Query: 326 VAGLAVLNKGRWMHSYIVKNGFVVDGVLGT 355
           +      N  RW     V+      G+  T
Sbjct: 463 IYA----NTQRWEDVAEVRKTMTNRGIRKT 488


>gi|296087881|emb|CBI35164.3| unnamed protein product [Vitis vinifera]
          Length = 663

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 242/603 (40%), Positives = 346/603 (57%), Gaps = 63/603 (10%)

Query: 94  IKCYVFNQRSHEALTLFCDLLDRFLLPD---NFTLPCVIKGAARLGAIKEGKQIHGLVFK 150
           I  ++     H AL +  +     L P    NF    VI    +    +    ++  + K
Sbjct: 97  IHAHIIKTHFHHALQIPLNDFPSGLSPSAQWNF----VITSYTKRNQPRNALNVYAQLRK 152

Query: 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYV-KKGEVEVAMK 209
           + F  D F+  S++    +     LG+                 I G+V KKG       
Sbjct: 153 MDFEVDNFMAPSVLKACGQVSWTQLGKE----------------IHGFVLKKGL------ 190

Query: 210 LFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSW----NAMINGYMKAGD 265
                 DRD+F    L+  + +C  VE AR +F +M  R++VSW     A+++ Y K G 
Sbjct: 191 ------DRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWIPTTTALLDMYAKCGH 244

Query: 266 VDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSA 325
           +  A +LF+ +  + +++W +MIAG   + R  E  +L   M   ++ PN+ T+      
Sbjct: 245 LGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITM------ 298

Query: 326 VAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHW 385
                 LNK R            VD +L T L+ MY+KCG I +A  +F     + +  W
Sbjct: 299 ------LNKER----------VEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMW 342

Query: 386 TAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN 445
            A+I G  MHG   +ALD+F +M R G+KP  ITFIG+L+ACSHAGLV +G++ F  M++
Sbjct: 343 NAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVH 402

Query: 446 DYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGE 505
            +G+ P IEHYGC+VD+L R G L+EA   I+SMP++PN ++W +L++  R H N  +GE
Sbjct: 403 TFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGE 462

Query: 506 YAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVL 565
            AA  L+++ P+  G  V++SNIYAAA +W   + VR+ MK  G +K+PG S IE  G +
Sbjct: 463 LAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTV 522

Query: 566 HEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERL 625
           HEF++GD+SHPQ   I+  L+EMR KL  AG+VPDT+ VLL I D++EKE  L  HSE+L
Sbjct: 523 HEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLNI-DEEEKETALTYHSEKL 581

Query: 626 AIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSC 685
           A+AFGLI+    +PIRIVKNLRVCNDCH+ TKLLS IY R IIVRD +RFHHF+ G CSC
Sbjct: 582 AMAFGLISTAPSTPIRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSC 641

Query: 686 KDF 688
            D+
Sbjct: 642 GDY 644



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 114/439 (25%), Positives = 199/439 (45%), Gaps = 61/439 (13%)

Query: 12  IHALQQHLPSRLHWNILKFS-----------STHKETQQLHALSVKTNLIYHSGISSRLL 60
           I  LQ H  S L +N                ST ++T+Q+HA  +KT+  +H  +   L 
Sbjct: 58  IQQLQHHPHSTLKFNPTPLQTPPTSPSQHDLSTLEQTKQIHAHIIKTH--FHHALQIPL- 114

Query: 61  SLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLP 120
                   N+     S        PS   +N +I  Y    +   AL ++  L       
Sbjct: 115 --------NDFPSGLS--------PS-AQWNFVITSYTKRNQPRNALNVYAQLRKMDFEV 157

Query: 121 DNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVF 180
           DNF  P V+K   ++   + GK+IHG V K G   D FV ++L+ MY +   ++  R VF
Sbjct: 158 DNFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVF 217

Query: 181 DAMDDKDLVSW----NCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVE 236
           D M ++D+VSW      L+D Y K G + +A +LF+ +  + + SWT ++ G  +  ++E
Sbjct: 218 DKMMERDVVSWIPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLE 277

Query: 237 IAREIFYRMPNRNL-----------------VSWNAMINGYMKAGDVDSACELFDDMEIR 279
              ++F RM   N+                 +   A+++ Y K GD+++A  LF +   R
Sbjct: 278 EGTKLFIRMQEENIFPNEITMLNKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISR 337

Query: 280 DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMH 339
           D+  WN++I G+ ++G   EAL++   M    V PND T +  L A +   ++ +G+ + 
Sbjct: 338 DICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLF 397

Query: 340 SYIVKN-GFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS-KKKVGHWTAMIVGLGMHG- 396
             +V   G V        ++ +  + G ++ A  + +++  K     W A++    +H  
Sbjct: 398 EKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKN 457

Query: 397 ------MATQALDLFNKMC 409
                  ATQ L++  + C
Sbjct: 458 PQLGELAATQLLEIEPENC 476


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 240/658 (36%), Positives = 381/658 (57%), Gaps = 11/658 (1%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYV 98
           Q+H + VK  L     +S+ L++LY+     N+  AR +FD+  +  S+V +N +I  Y 
Sbjct: 219 QVHTVVVKNGLDKTIPVSNSLINLYL--KCGNVRKARILFDKT-EVKSVVTWNSMISGYA 275

Query: 99  FNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKF 158
            N    EAL +F  +    +     +   +IK  A L  ++  +Q+H  V K GF FD+ 
Sbjct: 276 ANGLDLEALGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQN 335

Query: 159 VLSSLVSMYAK-FGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
           + ++L+  Y+K    +D  R   +     ++VSW  +I G+++    E A+ LF EM  +
Sbjct: 336 IRTALMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRK 395

Query: 218 DL----FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELF 273
            +    F+++ ++         E+  ++      R+     A+++ Y+K G VD A ++F
Sbjct: 396 GVRPNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVF 455

Query: 274 DDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGL-AVL 332
             ++ +D++ W++M+AGY   G    A+++   +  G V PN+ T  S L+  A   A +
Sbjct: 456 SGIDNKDIVAWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVCAATTASM 515

Query: 333 NKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGL 392
            +G+  H + +K+       + + L+ MY+K G IESA  VF+   +K +  W +MI G 
Sbjct: 516 GQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGHIESAEEVFKRQREKDLVSWNSMISGY 575

Query: 393 GMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT 452
             HG A +ALD+F +M +  +K  ++TFIGV  AC+HAGLV +G +YF++M+ D  I PT
Sbjct: 576 AQHGQAMKALDVFKEMKKRKVKMDSVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPT 635

Query: 453 IEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLI 512
            EH  C+VD+  R G LE+A   I++MP      IW ++L+  R H   ++G  AA  +I
Sbjct: 636 KEHNSCMVDLYSRAGQLEKAMKVIDNMPNLAGSTIWRTILAACRVHKKTELGRLAAEKII 695

Query: 513 KVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGD 572
            + P+    YV+LSN+YA +G W + ++VR++M +R  +K+PG S IE +   + F+ GD
Sbjct: 696 AMIPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYAFLAGD 755

Query: 573 KSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLI 632
           +SHP  D+I+ KL ++  +LK  G+ PDT+ VL  I+D+  KEA L  HSERLAIAFGLI
Sbjct: 756 RSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDE-HKEAVLAQHSERLAIAFGLI 814

Query: 633 NVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHF-KNGSCSCKDFW 689
                SP+ I+KNLRVC DCH V KL++ I  REI+VRD++RFHHF  +G CSC DFW
Sbjct: 815 ATPKGSPLLIIKNLRVCGDCHVVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 872



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 133/474 (28%), Positives = 228/474 (48%), Gaps = 19/474 (4%)

Query: 69  NNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCV 128
           + L+YA ++FD+         Y  L+  +  + R+ EA  LF ++    +  D      V
Sbjct: 45  SRLYYAHNLFDKSPDRDRES-YTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFSSV 103

Query: 129 IKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDL 188
           +K +A L     G+Q+H    K GF  D  V +SLV  Y K      GR VFD M ++++
Sbjct: 104 LKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNV 163

Query: 189 VSWNCLIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCG----KVEIARE 240
           V+W  LI GY +    E  + LF  M D     + F++   +   ++ G     +++   
Sbjct: 164 VTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTV 223

Query: 241 IFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEA 300
           +     ++ +   N++IN Y+K G+V  A  LFD  E++ ++TWNSMI+GY  NG  +EA
Sbjct: 224 VVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEA 283

Query: 301 LELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQM 360
           L +  +M +  V  ++++  S +   A L  L     +H  +VK GFV D  + T L+  
Sbjct: 284 LGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVA 343

Query: 361 YSKCGSIESALTVFRAIS-KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAIT 419
           YSKC ++  AL +F+       V  WTAMI G   +    +A+ LF++M R G++P   T
Sbjct: 344 YSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFT 403

Query: 420 FIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM 479
           +  +L A     +++    +  ++  +Y    T+     L+D   + G ++EA      +
Sbjct: 404 YSVILTALP---VISPSEVHAQVVKTNYERSSTVGT--ALLDAYVKLGKVDEAAKVFSGI 458

Query: 480 PMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIK--VAPDTIGCYVVLSNIYAA 531
             + + V W ++L+G    G  +      + L K  V P+      +L N+ AA
Sbjct: 459 DNK-DIVAWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSIL-NVCAA 510



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 128/504 (25%), Positives = 232/504 (46%), Gaps = 26/504 (5%)

Query: 12  IHALQQHLPSRLHWNILKFSSTHKET---QQLHALSVKTNLIYHSGISSRLLSLYVDPHI 68
           I  L   +   +  ++LK S+T  +    +QLH   +K   +    + + L+  Y+    
Sbjct: 88  IQHLGMEMDCSIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKG-- 145

Query: 69  NNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCV 128
           +N    R++FD  ++  ++V +  LI  Y  N  + E LTLF  + D    P++FT    
Sbjct: 146 SNFKDGRNVFDE-MKERNVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAA 204

Query: 129 IKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDL 188
           +   A  G    G Q+H +V K G      V +SL+++Y K G +   R +FD  + K +
Sbjct: 205 LGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSV 264

Query: 189 VSWNCLIDGYVKKGEVEVAMKLFDEMP-DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPN 247
           V+WN +I GY   G    A+ +F  M  +    S +        C  ++  R  F    +
Sbjct: 265 VTWNSMISGYAANGLDLEALGMFYSMRLNHVRLSESSFASIIKLCANLKELR--FTEQLH 322

Query: 248 RNLVSW---------NAMINGYMKAGDVDSACELFDDME-IRDLITWNSMIAGYELNGRF 297
            ++V +          A++  Y K   +  A  LF +   + ++++W +MI+G+  N   
Sbjct: 323 CSVVKYGFVFDQNIRTALMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGK 382

Query: 298 MEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLL 357
            EA+ L   M    V PN+ T    L+A   L V++    +H+ +VK  +     +GT L
Sbjct: 383 EEAVGLFSEMKRKGVRPNEFTYSVILTA---LPVISPSE-VHAQVVKTNYERSSTVGTAL 438

Query: 358 IQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA 417
           +  Y K G ++ A  VF  I  K +  W+AM+ G    G    A+ +F+++ + G+KP  
Sbjct: 439 LDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNE 498

Query: 418 ITFIGVLNACSH-AGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTI 476
            TF  +LN C+     +  G+++    I    ++ ++     L+ +  + G++E A+   
Sbjct: 499 FTFSSILNVCAATTASMGQGKQFHGFAIKSR-LDSSLCVSSALLTMYAKKGHIESAEEVF 557

Query: 477 ESMPMRPNFVIWMSLLSGARNHGN 500
           +    + + V W S++SG   HG 
Sbjct: 558 KRQREK-DLVSWNSMISGYAQHGQ 580


>gi|147798551|emb|CAN72187.1| hypothetical protein VITISV_012899 [Vitis vinifera]
          Length = 690

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 242/593 (40%), Positives = 345/593 (58%), Gaps = 52/593 (8%)

Query: 27  ILKFSSTHKETQQLHALSVKTNLIYHSGISSRL-LSLYVDPHINNLHYARSIF------D 79
           +L  S T  +  Q+H+  + T  I +  +++R+ L+     H   + +AR +F       
Sbjct: 76  LLPKSKTLHDVNQIHSRLITTGFINNPSLTTRIILNFSSSSHKPLVEFARYLFMSRHFGR 135

Query: 80  RILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIK 139
           +  +  +  L+N +IK +   +   EA  +F  +L+  +  D F+   V+K  +RLG IK
Sbjct: 136 KHRKQDNPFLWNAIIKSFSHGEDPXEAFXIFNLMLENGVCVDKFSFSLVLKACSRLGLIK 195

Query: 140 EGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYV 199
           EG QIHGL+  +  G D F+ + L+ +Y + G + + R++FD M  +D VS+N +IDGYV
Sbjct: 196 EGMQIHGLLGXMEIGSDVFLQNCLMCLYLRCGCLGIARQLFDRMMXRDSVSFNSMIDGYV 255

Query: 200 KKGEVE----------------------------------VAMKLFDEMPDRDLFSWTCL 225
           K G V+                                  VA +LF+EMP RDL SW  +
Sbjct: 256 KHGMVKSARELFDVMPMEQKNLISWNSMISGYARSEEGLRVAWELFEEMPKRDLISWNSM 315

Query: 226 VDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWN 285
           +DG  KCGK+E A  +F  MP R++VSW  M++GY K G++D A  LFD+M  RD+I+ N
Sbjct: 316 IDGCVKCGKMENAHHLFNXMPKRDVVSWANMVDGYAKLGEIDIARGLFDEMPERDVISCN 375

Query: 286 SMIAGYELNGRFMEALELLETML-IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVK 344
           +M+AGY  NG  MEAL     ML   ++ P +ATL+  LSA+A L   ++G  +H YI  
Sbjct: 376 AMMAGYVQNGXLMEALXFFHDMLSXKELFPXNATLLITLSAIAQLGHFDEGVALHCYIED 435

Query: 345 NGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDL 404
           NGF +   LG  LI MY+KCGSI++AL          + HW A+J GL +HG+   A +L
Sbjct: 436 NGFSLSEKLGXALIDMYAKCGSIDNAL----------IDHWNAIJXGLAIHGLGEVAFEL 485

Query: 405 FNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILC 464
           F +M ++ +KP  ITFIGVLNAC+HAGLV +G   F +M   + +EP ++HYGC+VDIL 
Sbjct: 486 FMEMEKLFVKPBDITFIGVLNACNHAGLVKEGLMXFXLMRXVHKVEPKLQHYGCMVDILG 545

Query: 465 RTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVV 524
           R G++EE K  +E MP+ PN V+W +LLS  RNH N  IGE  A +LI V       YV+
Sbjct: 546 RAGHVEEXKKFVEKMPIEPNDVVWRTLLSACRNHENFTIGEPVAKHLISVDSYNPSSYVL 605

Query: 525 LSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQ 577
           LSNIYA  G W+ V  +R MMK+R  +K PG S IE  G +HEF V DKSHPQ
Sbjct: 606 LSNIYAXFGMWNDVYRIRMMMKQRDLKKIPGCSQIELEGNVHEFFVRDKSHPQ 658


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 246/666 (36%), Positives = 373/666 (56%), Gaps = 18/666 (2%)

Query: 31  SSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLY 90
           S   K+ Q +H+L +K     +  I   L+ +Y    +     A  +F + ++ P +V++
Sbjct: 327 SKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGL--AIDAIGVF-KTIKKPDIVVW 383

Query: 91  NLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFK 150
           + LI C     +S E++ LF  +     LP+ +T+  ++  A   G ++ G+ IH  V+K
Sbjct: 384 SALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWK 443

Query: 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
            GF  D  V ++LV+MY K G +  G +++++M D+DL+SWN  + G    G  +  + +
Sbjct: 444 YGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTI 503

Query: 211 FDEM------PDRDLF-----SWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMING 259
           F  M      P+   F     S +CL D     G+   A  I  ++ + N V   A+I+ 
Sbjct: 504 FYHMLEEGFIPNMYTFISILGSCSCLFD--VHYGRQVHAHIIKNQLDDNNFVC-TALIDM 560

Query: 260 YMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATL 319
           Y K   ++ A   F+ + +RDL TW  +I  Y    +  +AL     M    V PN+ TL
Sbjct: 561 YAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTL 620

Query: 320 VSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK 379
              LS  + LA L  G+ +HS + K+G V D  +G+ L+ MY+KCG +E A  +F A+ +
Sbjct: 621 AGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIR 680

Query: 380 KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRY 439
           +    W  +I G   +G   +AL  F  M   G+ P  +TF G+L+ACSH GLV +G+ +
Sbjct: 681 RDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEH 740

Query: 440 FNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
           FN M  D+GI PT++H  C+VDIL R G  +E +  I+ M +  N +IW ++L  ++ H 
Sbjct: 741 FNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGASKMHN 800

Query: 500 NKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSI 559
           N  +GE AAN L ++ P+    Y++LSNI+A  G+WD V  VR +M  +G +K+PG S +
Sbjct: 801 NLVLGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKKEPGCSWV 860

Query: 560 EHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELE 619
           E  G +H FV  D SHPQ  EIH KL E+  +L +  +VP T  VL  + + ++KE  L 
Sbjct: 861 EANGQVHTFVSHDYSHPQIQEIHLKLDELDRELASIQYVPKTEYVLHNVGETEKKE-NLR 919

Query: 620 NHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFK 679
            HSERLA+ F LI+  S   IRI KNLR+C DCH V K +S I N+EI+VRD  RFHHFK
Sbjct: 920 FHSERLALGFALISTSSEKKIRIFKNLRICRDCHDVMKHISSITNQEIVVRDVRRFHHFK 979

Query: 680 NGSCSC 685
           NG+CSC
Sbjct: 980 NGACSC 985



 Score =  195 bits (496), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 147/537 (27%), Positives = 259/537 (48%), Gaps = 26/537 (4%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +Q+HA + K  L+    + S L+ LY       +  A  +F  + +    V +N+L+  Y
Sbjct: 233 KQMHAQAFKLGLLLDLFVGSALVDLYAK--CGEIELASKMFIGMPEQND-VTWNVLLNGY 289

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
                    L LFC +++  +  + FTL  V+KG A    +K+G+ IH L+ K G+  ++
Sbjct: 290 AQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNE 349

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLF------ 211
           F+   LV MY+K G       VF  +   D+V W+ LI    ++G+ E ++KLF      
Sbjct: 350 FIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLG 409

Query: 212 DEMPDRDLFSWTCLVDGFSKCGKVEIAREIF-----YRMPNRNLVSWNAMINGYMKAGDV 266
           D +P++  ++   L+   +  G ++  + I      Y       VS NA++  YMK G V
Sbjct: 410 DTLPNQ--YTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVS-NALVTMYMKNGCV 466

Query: 267 DSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326
               +L++ M  RDLI+WN+ ++G    G +   L +   ML    +PN  T +S L + 
Sbjct: 467 HDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSC 526

Query: 327 AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWT 386
           + L  ++ GR +H++I+KN    +  + T LI MY+KC  +E A   F  +S + +  WT
Sbjct: 527 SCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWT 586

Query: 387 AMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIND 446
            +I          +AL+ F +M + G+KP   T  G L+ CS    +  G++  +M+   
Sbjct: 587 VIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKS 646

Query: 447 YGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG-ARN-HGNKDIG 504
             +         LVD+  + G +EEA++  E++ +R + + W +++ G A+N  GNK + 
Sbjct: 647 GHVSDMFVG-SALVDMYAKCGCMEEAEALFEAL-IRRDTIAWNTIICGYAQNGQGNKALT 704

Query: 505 EYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEH 561
            +       ++PD     V  + I +A      V E +E      +R    S +++H
Sbjct: 705 AFRMMLDEGISPDG----VTFTGILSACSHQGLVEEGKEHFNSM-YRDFGISPTVDH 756



 Score =  189 bits (479), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 137/484 (28%), Positives = 242/484 (50%), Gaps = 22/484 (4%)

Query: 37  TQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKC 96
            + +H L VK  +   S +   L+++Y     +   YAR +  + +    +V +  LI+ 
Sbjct: 131 AKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSA--YARLVLAK-MPDRDVVSWTALIQG 187

Query: 97  YVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFD 156
            V    +++++ LF ++ +  ++P+ FTL   +K  +   A+  GKQ+H   FKLG   D
Sbjct: 188 LVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLD 247

Query: 157 KFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD 216
            FV S+LV +YAK GEI+L  ++F  M +++ V+WN L++GY ++G+V   +KLF  M +
Sbjct: 248 LFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMME 307

Query: 217 RDL----FSWTCLVDGFS-----KCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVD 267
            D+    F+ T ++ G +     K G+V I   I       N      +++ Y K G   
Sbjct: 308 LDVKCNEFTLTTVLKGCANSKNLKQGQV-IHSLIIKCGYEGNEFIGCGLVDMYSKCGLAI 366

Query: 268 SACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVA 327
            A  +F  ++  D++ W+++I   +  G+  E+++L   M +GD LPN  T+ S LSA  
Sbjct: 367 DAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAAT 426

Query: 328 GLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTA 387
               L  G+ +H+ + K GF  D  +   L+ MY K G +     ++ ++  + +  W A
Sbjct: 427 NTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNA 486

Query: 388 MIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDY 447
            + GL   GM  + L +F  M   G  P   TFI +L +CS    V+ GR+    +I + 
Sbjct: 487 YLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKN- 545

Query: 448 GIEPTIEHYGC--LVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGE 505
             +    ++ C  L+D+  +  YLE+A      + +R  F  W  +++   N+   + GE
Sbjct: 546 --QLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFT-WTVIIT---NYAQTNQGE 599

Query: 506 YAAN 509
            A N
Sbjct: 600 KALN 603



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 79/182 (43%), Gaps = 6/182 (3%)

Query: 321 SALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKK 380
           S L   A    L   + +H  IVK+    D  L   L+ +Y+KC     A  V   +  +
Sbjct: 117 SMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDR 176

Query: 381 KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYF 440
            V  WTA+I GL   G A  ++ LF +M   G+ P   T    L ACS    ++ G++  
Sbjct: 177 DVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQ-- 234

Query: 441 NMMINDYGIEPTIEHY--GCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNH 498
            M    + +   ++ +    LVD+  + G +E A      MP   N V W  LL+G    
Sbjct: 235 -MHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMP-EQNDVTWNVLLNGYAQR 292

Query: 499 GN 500
           G+
Sbjct: 293 GD 294


>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 802

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 256/762 (33%), Positives = 390/762 (51%), Gaps = 112/762 (14%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLY---VDPHINNLHYARSIFDRI-LQHPSLVLYNLL 93
           + +HA +VK  L+  + + + LLS Y             AR +FD I     ++  +N L
Sbjct: 43  RAIHARAVKAGLLASAYLCNNLLSYYAGPAAGGGGGFREARRLFDEIPAAQRNVFTWNSL 102

Query: 94  IKCY-----------VFNQ--------------------RSHEALTLFCDLLDRFLLPDN 122
           +  Y           VF +                    R  EA+ +F D++   L P  
Sbjct: 103 LSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLDMVTDGLSPTQ 162

Query: 123 FTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDA 182
           FTL  V+   A   A   G+++H  V KLG      V +S+++MY K G+ +  R VF+ 
Sbjct: 163 FTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKCGDAETARAVFER 222

Query: 183 MDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGF------------- 229
           M ++ + SWN ++      G +++A+ LF+ MPDR + SW  ++ G+             
Sbjct: 223 MPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGLNAKALWFF 282

Query: 230 --------------------SKC---GKVEIAREIFY-----RMPNRNLVSWNAMINGYM 261
                               S C   G V I +++       RMP    V+ NA+I+ Y 
Sbjct: 283 SRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSRMPYIGQVT-NALISMYA 341

Query: 262 KAGDVDS---------------------------------ACELFDDMEIRDLITWNSMI 288
           K+G V++                                 A E+FD M  RD++ W +MI
Sbjct: 342 KSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHAREMFDVMSNRDVVAWTAMI 401

Query: 289 AGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFV 348
            GYE NG   EA+EL   M+     PN  T+ + LS  A LA L  G+ +H   +++   
Sbjct: 402 VGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLACLEYGKQIHCKAIRSLQE 461

Query: 349 VDGVLGTLLIQMYSKCGSIESALTVF-RAISKKKVGHWTAMIVGLGMHGMATQALDLFNK 407
               +   ++ MY++ GS+  A  VF R   +K+   WT+MIV L  HG+   A+ LF +
Sbjct: 462 QSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIVALAQHGLGEDAVGLFEE 521

Query: 408 MCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTG 467
           M R+G+KP  ITF+GVL+AC+H G V++G+RYF  + + +GI P + HY C+VD+L R G
Sbjct: 522 MLRVGVKPDRITFVGVLSACTHVGFVDEGKRYFQQLQDKHGIVPEMSHYACMVDLLARAG 581

Query: 468 YLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSN 527
              EA+  I+ MP+ P+ + W SLLS  R H N D+ E AA  L+ + P   G Y  LSN
Sbjct: 582 LFSEAQEFIQQMPVEPDAIAWGSLLSACRVHKNADLAELAAEKLLSIDPGNSGAYSALSN 641

Query: 528 IYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSE 587
           +Y+A G+W+  +++ +  K +  +K+ G S       +H F   D  HPQ D ++   ++
Sbjct: 642 VYSACGRWNDAAKIWKRRKDKSVKKETGFSWTHIGNRVHVFGADDVLHPQRDTVYRTAAK 701

Query: 588 MRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLR 647
           M + +K AG VPD   VL  ++D+  KE  L  HSE+LAIAFGL++   ++ +RI+KNLR
Sbjct: 702 MWDDIKKAGFVPDLQSVLHDVDDEL-KEEMLSRHSEKLAIAFGLVSTPEKTTLRIMKNLR 760

Query: 648 VCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           VCNDCH+  K +S + +REII+RD +RFHHFK+G CSCKD+W
Sbjct: 761 VCNDCHTAIKFISKVADREIILRDATRFHHFKDGFCSCKDYW 802



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 133/510 (26%), Positives = 213/510 (41%), Gaps = 117/510 (22%)

Query: 130 KGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDL-----GRRVFDAMD 184
           + AA  GA   G+ IH    K G     ++ ++L+S YA             RR+FD + 
Sbjct: 34  QTAANPGA---GRAIHARAVKAGLLASAYLCNNLLSYYAGPAAGGGGGFREARRLFDEIP 90

Query: 185 --DKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIF 242
              +++ +WN L+  Y K G +  A  +F EMP+RD  SWT +V G ++ G+   A ++F
Sbjct: 91  AAQRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMF 150

Query: 243 YRM------PNR----NLVS-----------------------------WNAMINGYMKA 263
             M      P +    N++S                              N+++N Y K 
Sbjct: 151 LDMVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKC 210

Query: 264 GD-------------------------------VDSACELFDDMEIRDLITWNSMIAGYE 292
           GD                               +D A  LF++M  R +++WN++IAGY 
Sbjct: 211 GDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYN 270

Query: 293 LNGRFMEALELLETML-IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDG 351
            NG   +AL     ML    + P++ T+ S LSA A L +++ G+ +H+YI+++     G
Sbjct: 271 QNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSRMPYIG 330

Query: 352 VLGTLLIQMYSKCGSIESALTV---------------------------------FRAIS 378
            +   LI MY+K GS+E+A  V                                 F  +S
Sbjct: 331 QVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHAREMFDVMS 390

Query: 379 KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR 438
            + V  WTAMIVG   +G   +A++LF  M R G +P + T   VL+ C+    +  G++
Sbjct: 391 NRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLACLEYGKQ 450

Query: 439 YFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNH 498
                I     E +      +V +  R+G L  A+   + +  R   V W S++     H
Sbjct: 451 IHCKAIRSLQ-EQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIVALAQH 509

Query: 499 --GNKDIGEYAANNLIKVAPDTIGCYVVLS 526
             G   +G +     + V PD I    VLS
Sbjct: 510 GLGEDAVGLFEEMLRVGVKPDRITFVGVLS 539


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 251/715 (35%), Positives = 396/715 (55%), Gaps = 63/715 (8%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHP--SLVLYNL 92
           +    +HA+     L  +  I + ++++Y       L  A  +FD +L+     +V +N 
Sbjct: 144 RHGASVHAIVCANGLGSNVFICNSIVAMY--GRCGALDDAHQMFDEVLERKIEDIVSWNS 201

Query: 93  LIKCYVFNQRSHEALTLFCDLLDRF---LLPDNFTLPCVIKGAARLGAIKEGKQIHGLVF 149
           ++  YV   +S  AL +   + + +   L PD  TL  ++   A + A++ GKQ+HG   
Sbjct: 202 ILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSV 261

Query: 150 KLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMK 209
           + G   D FV ++LVSMYAK  +++   +VF+ +  KD+VSWN ++ GY + G  + A+ 
Sbjct: 262 RNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALS 321

Query: 210 LFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRM------PN------------ 247
           LF  M + D+     +W+ ++ G+++ G    A ++F +M      PN            
Sbjct: 322 LFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCA 381

Query: 248 ----------------------------RNLVSWNAMINGYMKAGDVDSACELFDDMEIR 279
                                        +L+  N +I+ Y K      A  +FD +E +
Sbjct: 382 SVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGK 441

Query: 280 D--LITWNSMIAGYELNGRFMEALELLETMLI--GDVLPNDATLVSALSAVAGLAVLNKG 335
           D  ++TW  MI GY  +G   +AL+L   +      + PN  TL  AL A A L  L  G
Sbjct: 442 DKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLG 501

Query: 336 RWMHSYIVKNGFVVDGV-LGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGM 394
           R +H+Y ++N    + + +G  LI MYSK G I++A  VF  +  + V  WT+++ G GM
Sbjct: 502 RQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLRNVVSWTSLMTGYGM 561

Query: 395 HGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIE 454
           HG   +AL LF++M ++G     ITF+ VL ACSH+G+V+ G  YF+ M+  +GI P  E
Sbjct: 562 HGRGEEALHLFDQMQKLGFAVDGITFLVVLYACSHSGMVDQGMIYFHDMVKGFGITPGAE 621

Query: 455 HYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKV 514
           HY C+VD+L R G L EA   I++M M P  V+W++LLS +R H N ++GEYAA+ L ++
Sbjct: 622 HYACMVDLLGRAGRLNEAMELIKNMSMEPTAVVWVALLSASRIHANIELGEYAASKLTEL 681

Query: 515 APDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKS 574
             +  G Y +LSN+YA A +W  V+ +R +MK  G RK PG S I+ +     F VGD+S
Sbjct: 682 GAENDGSYTLLSNLYANARRWKDVARIRSLMKHTGIRKRPGCSWIQGKKSTTTFFVGDRS 741

Query: 575 HPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINV 634
           HP++++I++ L ++  ++K  G+VP T+  L  ++D+ EK   L  HSE+LA+A+G++  
Sbjct: 742 HPESEQIYNLLLDLIKRIKDMGYVPQTSFALHDVDDE-EKGDLLFEHSEKLAVAYGILTT 800

Query: 635 KSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
               PIRI KNLR+C DCHS    +S I + EI++RD+SRFHHFK GSCSC+ +W
Sbjct: 801 APGQPIRIHKNLRICGDCHSALTYISMIIDHEIVLRDSSRFHHFKKGSCSCRSYW 855



 Score =  222 bits (565), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 161/549 (29%), Positives = 267/549 (48%), Gaps = 72/549 (13%)

Query: 74  ARSIFDRIL-QHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGA 132
           A S+  R++  H ++  +N LI+  V      + L  +C +     LPD++T P V+K  
Sbjct: 78  AVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKAC 137

Query: 133 ARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK---DLV 189
             + +++ G  +H +V   G G + F+ +S+V+MY + G +D   ++FD + ++   D+V
Sbjct: 138 GEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIV 197

Query: 190 SWNCLIDGYVKKGEVEVAMKLFDEM---------PDR----------------------- 217
           SWN ++  YV+ G+   A+++   M         PD                        
Sbjct: 198 SWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVH 257

Query: 218 ----------DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVD 267
                     D+F    LV  ++KC K+  A ++F  +  +++VSWNAM+ GY + G  D
Sbjct: 258 GFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFD 317

Query: 268 SACELFDDMEIRDL----ITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSAL 323
           SA  LF  M+  D+    ITW+++IAGY   G   EAL++   M +  + PN  TL S L
Sbjct: 318 SALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLL 377

Query: 324 SAVAGLAVLNKGRWMHSYIVKNGFVV-------DGVLGTLLIQMYSKCGSIESALTVFRA 376
           S  A +  L  G+  H+Y++KN   +       D ++   LI MY+KC S   A ++F +
Sbjct: 378 SGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDS 437

Query: 377 IS--KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRM--GMKPTAITFIGVLNACSHAGL 432
           I    K V  WT MI G   HG A  AL LF ++ +    +KP A T    L AC+  G 
Sbjct: 438 IEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGE 497

Query: 433 VNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLL 492
           +  GR+     + +      +    CL+D+  ++G ++ A++  ++M +R N V W SL+
Sbjct: 498 LRLGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLR-NVVSWTSLM 556

Query: 493 SGARNHGNKDIGEYAANNLIKV--APDTIGCYVVLSNIYAA--AGQWDK-VSEVREMMKK 547
           +G   HG  +   +  + + K+  A D I   VVL   YA   +G  D+ +    +M+K 
Sbjct: 557 TGYGMHGRGEEALHLFDQMQKLGFAVDGITFLVVL---YACSHSGMVDQGMIYFHDMVK- 612

Query: 548 RGFRKDPGS 556
            GF   PG+
Sbjct: 613 -GFGITPGA 620


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 251/666 (37%), Positives = 366/666 (54%), Gaps = 17/666 (2%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           +  +QLHAL +       + +++ L+++Y       L +A  +FD + Q  +LV +  +I
Sbjct: 22  RRGKQLHALLICAGYTPCTFLTNHLVNMY--SKCGELDHALKLFDTMPQR-NLVSWTAMI 78

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
                N +  EA+  FC +     +P  F     I+  A LG+I+ GKQ+H L  K G G
Sbjct: 79  SGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIG 138

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
            + FV S+L  MY+K G +    +VF+ M  KD VSW  +IDGY K GE E A+  F +M
Sbjct: 139 SELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKM 198

Query: 215 PDRDL-FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSW---------NAMINGYMKAG 264
            D ++      L      CG ++  +  F R  + ++V           NA+ + Y KAG
Sbjct: 199 IDEEVTIDQHVLCSTLGACGALKACK--FGRSVHSSVVKLGFESDIFVGNALTDMYSKAG 256

Query: 265 DVDSACELFD-DMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSAL 323
           D++SA  +F  D E R+++++  +I GY    +  + L +   +    + PN+ T  S +
Sbjct: 257 DMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLI 316

Query: 324 SAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVG 383
            A A  A L +G  +H+ ++K  F  D  + ++L+ MY KCG +E A+  F  I      
Sbjct: 317 KACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEHAIQAFDEIGDPTEI 376

Query: 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMM 443
            W +++   G HG+   A+  F +M   G+KP AITFI +L  CSHAGLV +G  YF  M
Sbjct: 377 AWNSLVSVFGQHGLGKDAIKFFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSM 436

Query: 444 INDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDI 503
              YG+ P  EHY C++D+L R G L+EAK  I  MP  PN   W S L   R HG+K++
Sbjct: 437 DKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEM 496

Query: 504 GEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRG 563
           G+ AA  L+K+ P   G  V+LSNIYA   QW+ V  VR  M+    +K PG S ++   
Sbjct: 497 GKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGY 556

Query: 564 VLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSE 623
             H F   D SH +   I+ KL  + +++KAAG+VP T  V L ++D   KE  L  HSE
Sbjct: 557 KTHVFGAEDWSHXRKSAIYEKLDXLLDQIKAAGYVPXTDSVPLDMDDXM-KEKLLHRHSE 615

Query: 624 RLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSC 683
           R+A+AF LI++    PI + KNLRVC DCHS  K +S +  R+IIVRDNSRFHHF +GSC
Sbjct: 616 RIAVAFALISMPIGKPIIVKKNLRVCVDCHSAIKFISKVTGRKIIVRDNSRFHHFTDGSC 675

Query: 684 SCKDFW 689
           SC D+W
Sbjct: 676 SCGDYW 681



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 119/423 (28%), Positives = 189/423 (44%), Gaps = 75/423 (17%)

Query: 118 LLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGR 177
           +L D   L  VI+  A+   ++ GKQ+H L+   G+    F+ + LV+MY+K GE+D   
Sbjct: 1   MLRDTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHAL 60

Query: 178 RVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLF------DEMPDR-------------- 217
           ++FD M  ++LVSW  +I G  +  +   A++ F       E+P +              
Sbjct: 61  KLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLG 120

Query: 218 -------------------DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMIN 258
                              +LF  + L D +SKCG +  A ++F  MP ++ VSW AMI+
Sbjct: 121 SIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMID 180

Query: 259 GYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDAT 318
           GY K G+                               F EAL   + M+  +V  +   
Sbjct: 181 GYSKIGE-------------------------------FEEALLAFKKMIDEEVTIDQHV 209

Query: 319 LVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS 378
           L S L A   L     GR +HS +VK GF  D  +G  L  MYSK G +ESA  VF   S
Sbjct: 210 LCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDS 269

Query: 379 K-KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGR 437
           + + V  +T +I G        + L +F ++ R G++P   TF  ++ AC++   +  G 
Sbjct: 270 ECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGT 329

Query: 438 R-YFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGAR 496
           + +  +M  ++  +P +     LVD+  + G LE A    + +   P  + W SL+S   
Sbjct: 330 QLHAQVMKINFDEDPFVSSI--LVDMYGKCGLLEHAIQAFDEIG-DPTEIAWNSLVSVFG 386

Query: 497 NHG 499
            HG
Sbjct: 387 QHG 389


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 251/667 (37%), Positives = 375/667 (56%), Gaps = 21/667 (3%)

Query: 35  KETQQLHALSVKTNLIYHSGISS--RLLSLYVDPHINNLHYARSIFDRILQHPS--LVLY 90
           K   Q+H+  V TN   H+ +++   LL LY      ++H+   +F+    HPS  +V +
Sbjct: 114 KHATQIHSQLVTTN--NHASLANINTLLLLYAK--CGSIHHTLLLFN-TYPHPSTNVVTW 168

Query: 91  NLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFK 150
             LI     + +  +ALT F  +    + P++FT   ++   A    + EG+QIH L+ K
Sbjct: 169 TTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLSEGQQIHALIHK 228

Query: 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
             F  D FV ++L+ MYAK G + L   VFD M  ++LVSWN +I G+VK      A+ +
Sbjct: 229 HCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKNKLYGRAIGV 288

Query: 211 FDEM----PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSW----NAMINGYMK 262
           F E+    PD+   S + ++   +   +++  +++   +  R LV      N++++ Y K
Sbjct: 289 FREVLSLGPDQ--VSISSVLSACAGLVELDFGKQVHGSIVKRGLVGLVYVKNSLVDMYCK 346

Query: 263 AGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSA 322
            G  + A +LF     RD++TWN MI G      F +A    + M+   V P++A+  S 
Sbjct: 347 CGLFEDATKLFCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAMIREGVEPDEASYSSL 406

Query: 323 LSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKV 382
             A A +A L +G  +HS+++K G V +  + + L+ MY KCGS+  A  VFR   +  V
Sbjct: 407 FHASASIAALTQGTMIHSHVLKTGHVKNSRISSSLVTMYGKCGSMLDAYQVFRETKEHNV 466

Query: 383 GHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNM 442
             WTAMI     HG A +A+ LF +M   G+ P  ITF+ VL+ACSH G ++DG +YFN 
Sbjct: 467 VCWTAMITVFHQHGCANEAIKLFEEMLNEGVVPEYITFVSVLSACSHTGKIDDGFKYFNS 526

Query: 443 MINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKD 502
           M N + I+P +EHY C+VD+L R G LEEA   IESMP  P+ ++W +LL     H N +
Sbjct: 527 MANVHNIKPGLEHYACMVDLLGRVGRLEEACRFIESMPFEPDSLVWGALLGACGKHANVE 586

Query: 503 IGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHR 562
           +G   A  L K+ PD  G Y++LSNIY   G  ++  EVR +M   G RK+ G S I+ +
Sbjct: 587 MGREVAERLFKLEPDNPGNYMLLSNIYIRHGMLEEADEVRRLMGINGVRKESGCSWIDVK 646

Query: 563 GVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHS 622
                F   D+SH +T EI+  L +++  +K  G+V +T      +E  +E+   L  HS
Sbjct: 647 NRTFVFNANDRSHSRTQEIYGMLQKLKELIKRRGYVAETQFATNSVEGSEEQ--SLWCHS 704

Query: 623 ERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGS 682
           E+LA+AFGL+ +   SP+RI KNLR C DCH+V K  S I+ REIIVRD +RFH F NGS
Sbjct: 705 EKLALAFGLLVLPPGSPVRIKKNLRTCGDCHTVMKFASEIFQREIIVRDINRFHRFTNGS 764

Query: 683 CSCKDFW 689
           CSC D+W
Sbjct: 765 CSCMDYW 771


>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
 gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g49142
 gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
          Length = 686

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 248/702 (35%), Positives = 384/702 (54%), Gaps = 49/702 (6%)

Query: 2   QTQTLQHSSPIHALQQHLPSRLHWNILKFSSTHKETQQL---HALSVKTNLIYHSGISSR 58
           Q++ +  S P   L Q  P    + + +   T+ + + L   H+  +  +L  +S +  +
Sbjct: 20  QSRKVSSSLPKLELDQKSPQETVFLLGQVLDTYPDIRTLRTVHSRIILEDLRCNSSLGVK 79

Query: 59  LLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFL 118
           L+  Y    + ++  AR +FD I +  ++++ N++I+ YV N    E + +F  +    +
Sbjct: 80  LMRAYAS--LKDVASARKVFDEIPER-NVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNV 136

Query: 119 LPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRR 178
            PD++T PCV+K  +  G I  G++IHG   K+G     FV + LVSMY K G +   R 
Sbjct: 137 RPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARL 196

Query: 179 VFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIA 238
           V D                               EM  RD+ SW  LV G+++  + + A
Sbjct: 197 VLD-------------------------------EMSRRDVVSWNSLVVGYAQNQRFDDA 225

Query: 239 REIFYRMPNRNLVSWNAMINGYMKA------GDVDSACELFDDMEIRDLITWNSMIAGYE 292
            E+   M +  +      +   + A       +V    ++F  M  + L++WN MI  Y 
Sbjct: 226 LEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYM 285

Query: 293 LNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV 352
            N   +EA+EL   M      P+  ++ S L A    + L+ G+ +H YI +   + + +
Sbjct: 286 KNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLL 345

Query: 353 LGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG 412
           L   LI MY+KCG +E A  VF  +  + V  WTAMI   G  G    A+ LF+K+   G
Sbjct: 346 LENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSG 405

Query: 413 MKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEA 472
           + P +I F+  L ACSHAGL+ +GR  F +M + Y I P +EH  C+VD+L R G ++EA
Sbjct: 406 LVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEA 465

Query: 473 KSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAA 532
              I+ M M PN  +W +LL   R H + DIG  AA+ L ++AP+  G YV+LSNIYA A
Sbjct: 466 YRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKA 525

Query: 533 GQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKL 592
           G+W++V+ +R +MK +G +K+PG+S++E   ++H F+VGD+SHPQ+DEI+ +L  +  K+
Sbjct: 526 GRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYRELDVLVKKM 585

Query: 593 KAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVK-----SRSPIRIVKNLR 647
           K  G+VPD+   L  +E++ +KE  L  HSE+LAI F L+N K     S + IRI KNLR
Sbjct: 586 KELGYVPDSESALHDVEEE-DKETHLAVHSEKLAIVFALMNTKEEEEDSNNTIRITKNLR 644

Query: 648 VCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           +C DCH   KL+S I +REII+RD +RFH F+ G CSC D+W
Sbjct: 645 ICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSCGDYW 686


>gi|225441789|ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
          Length = 564

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 233/565 (41%), Positives = 345/565 (61%), Gaps = 22/565 (3%)

Query: 142 KQIHGLVF-------KLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCL 194
           +QIH  +         + FG  K +    +S Y   G+ID  R++F  +   ++ SWN +
Sbjct: 5   RQIHARLLTHAMPISSISFGLCKIIGFCALSPY---GDIDYARKLFSQIQRPNIFSWNSM 61

Query: 195 IDGYVK-KGEVEVAMKLFDEM-----PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR 248
           I G  + +   +  + LF +M     P+ + F+   ++   S    +E  +++   +   
Sbjct: 62  IRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSALEEGQQVHANVLKS 121

Query: 249 NLVS----WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELL 304
              S      A++N Y K  D+  A ++FD++  R+L+ W++MI+GY   G   EAL L 
Sbjct: 122 GFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGLVNEALGLF 181

Query: 305 ETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKC 364
             M    V+P++ T+VS +SA A    L+ G+W+H+YI K     D  L T L+ MY+KC
Sbjct: 182 RDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLELSTALVNMYAKC 241

Query: 365 GSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVL 424
           G IE A  VF A+  K    W++MIVGL ++G+A  AL+ F +M    +KP  +TFIGVL
Sbjct: 242 GCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVL 301

Query: 425 NACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPN 484
           +AC+H+GLV++GRRY++ M+ ++GI P++E YGC+VD+LCR   +E+A + +E+MP+ PN
Sbjct: 302 SACAHSGLVSEGRRYWSSML-EFGIVPSMELYGCMVDLLCRASLVEDACTLVETMPISPN 360

Query: 485 FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREM 544
            VIW +LL G +   N D  E  A  L+++ P     Y++LSN+YA+  QW+K+S+VR+ 
Sbjct: 361 PVIWRTLLVGCKKSKNLDKSEVVAQRLLELEPHNAENYILLSNLYASMSQWEKMSQVRKK 420

Query: 545 MKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQV 604
           MK  G +  PG SSIE  G++HEFV+GD SHP+  E+   L ++  ++ A GH P  + V
Sbjct: 421 MKGMGIKAVPGCSSIEVDGLVHEFVMGDWSHPEAMEVREILRDISKRVHAVGHQPGISDV 480

Query: 605 LLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYN 664
           L  + D+ EKE  L  HSERLAIA+GL+  K+   IRIVKNLRVC DCH VTK++S  Y 
Sbjct: 481 LHNVVDE-EKENALCEHSERLAIAYGLLKTKTPMAIRIVKNLRVCGDCHEVTKIISAEYR 539

Query: 665 REIIVRDNSRFHHFKNGSCSCKDFW 689
           REIIVRD  RFH F NGSCSC+DFW
Sbjct: 540 REIIVRDRVRFHKFVNGSCSCRDFW 564



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 104/335 (31%), Positives = 178/335 (53%), Gaps = 16/335 (4%)

Query: 70  NLHYARSIFDRILQHPSLVLYNLLIK-CYVFNQRSHEALTLFCDLLDR-FLLPDNFTLPC 127
           ++ YAR +F +I Q P++  +N +I+ C      S E + LF  ++ R +  P+ FT+  
Sbjct: 39  DIDYARKLFSQI-QRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAF 97

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD 187
           V+K  + + A++EG+Q+H  V K GFG   FV ++LV+ YAK  +I L  +VFD + D++
Sbjct: 98  VLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRN 157

Query: 188 LVSWNCLIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREIFY 243
           LV+W+ +I GY + G V  A+ LF +M       D  +   ++   +  G ++  + +  
Sbjct: 158 LVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHA 217

Query: 244 RMPNRNLVSWN-----AMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFM 298
            + N+ L+  +     A++N Y K G ++ A E+FD M ++D   W+SMI G  +NG   
Sbjct: 218 YI-NKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAE 276

Query: 299 EALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLI 358
           +ALE    M    V PN  T +  LSA A   ++++GR   S +++ G V    L   ++
Sbjct: 277 DALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSMLEFGIVPSMELYGCMV 336

Query: 359 QMYSKCGSIESALTVFRA--ISKKKVGHWTAMIVG 391
            +  +   +E A T+     IS   V  W  ++VG
Sbjct: 337 DLLCRASLVEDACTLVETMPISPNPV-IWRTLLVG 370


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 226/557 (40%), Positives = 339/557 (60%), Gaps = 11/557 (1%)

Query: 142  KQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKK 201
            K+ H  +F  G  +D  +L+    MY  F  ID    VF+ + +     WN +I G+   
Sbjct: 737  KKTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATD 796

Query: 202  GEVEVAMKLFDEM------PDRDLFSW---TCLVDGFSKCGKVEIAREIFYRMPNRNLVS 252
            G    +++L+ +M      PD+  F +   +C      + GKV I + +     + +L  
Sbjct: 797  GRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKV-IHQHLVCCGCSNDLFV 855

Query: 253  WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDV 312
              A+++ Y K GD+++A  +FD M +RDL++W SMI+GY  NG   E L   + M    V
Sbjct: 856  DAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGV 915

Query: 313  LPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALT 372
            +PN  +++S L A   L  L KG W HSY+++ GF  D ++ T ++ MYSKCGS++ A  
Sbjct: 916  IPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARC 975

Query: 373  VFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGL 432
            +F   + K +  W+AMI   G+HG   +A+DLF++M + G++P+ +TF  VL+ACSH+GL
Sbjct: 976  LFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGL 1035

Query: 433  VNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLL 492
            + +G+ YF +M  ++ I   + +Y C+VD+L R G L EA   IE+MP+ P+  IW SLL
Sbjct: 1036 LEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLL 1095

Query: 493  SGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRK 552
               R H N D+ E  A++L  + P   G +V+LSNIYAA  +W++V +VR+MM +RG  K
Sbjct: 1096 GACRIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGANK 1155

Query: 553  DPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQK 612
              G S +E+   +H+F VGD+SHPQ +++++KL E+   +K  G+VP T  VL  IE++ 
Sbjct: 1156 IQGFSLVEYDNQVHKFGVGDRSHPQWEKLYAKLEELAAPMKHLGYVPLTDFVLHDIEEEA 1215

Query: 613  EKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDN 672
             KEA L  HSERLAIAFGLIN    + +RI KNLR+C DCH+  KL+S I NR I+VRD 
Sbjct: 1216 -KEAALSYHSERLAIAFGLINTSPGTTLRITKNLRICGDCHNAIKLISKIVNRVILVRDM 1274

Query: 673  SRFHHFKNGSCSCKDFW 689
             RFH F++G CSC D+W
Sbjct: 1275 HRFHRFEDGVCSCGDYW 1291



 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 181/560 (32%), Positives = 308/560 (55%), Gaps = 21/560 (3%)

Query: 55  ISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDL- 113
           + S L+ LY       +  A  +F+   Q P  VL+  ++  Y  N    EAL LF  + 
Sbjct: 141 VGSALVELY--SKCGQMGEALKVFEE-FQRPDTVLWTSMVTGYQQNNDPEEALALFSQMV 197

Query: 114 -LDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGE 172
            +D  +L D  TL  V+   A+L  +K G  +HGLV +  F  D  +++SL+++YAK G 
Sbjct: 198 MMDCVVL-DPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGC 256

Query: 173 IDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLF-SWTCLVDGFSK 231
             +   +F  M +KD++SW+ +I  Y        A+ LF EM ++    +   +V     
Sbjct: 257 EKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQA 316

Query: 232 CGKVEIAREIFYRMPNRNLVSW----------NAMINGYMKAGDVDSACELFDDMEIRDL 281
           C    ++R +        +  W           A+I+ YMK    D A +LF  +  +D+
Sbjct: 317 CA---VSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDV 373

Query: 282 ITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSY 341
           ++W ++++GY  NG   +++ +   ML   + P+   +V  L+A + L +  +   +H Y
Sbjct: 374 VSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGY 433

Query: 342 IVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQA 401
           +V++GF  +  +G  LI++YSKCGS+  A+ +F+ +  + V  W++MI   G+HG   +A
Sbjct: 434 VVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEA 493

Query: 402 LDLFNKMCRMG-MKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLV 460
           L++F++M +   ++P  +TF+ +L+ACSHAGLV +G + F+ M++DY + P  EH+G +V
Sbjct: 494 LEIFDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDYQLRPDSEHFGIMV 553

Query: 461 DILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIG 520
           D+L R G L +A   I  MP+     +W +LL   R H N ++GE AA NL  + P   G
Sbjct: 554 DLLGRIGQLGKAMDIINRMPIPAGPHVWGALLGACRIHHNIEMGEAAAKNLFWLDPSHAG 613

Query: 521 CYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDE 580
            Y++LSNIYA  G+WD V+E+R  +K+RG +K  G S +E RG +H F+  D+ HP + +
Sbjct: 614 YYILLSNIYAVDGKWDNVAELRTRIKERGLKKMFGQSMVEVRGGVHSFLASDRFHPDSQK 673

Query: 581 IHSKLSEMRNKLKAAGHVPD 600
           I+  L ++  ++    ++PD
Sbjct: 674 IYELLRKLEAQMGKEVYIPD 693



 Score =  211 bits (537), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 158/557 (28%), Positives = 263/557 (47%), Gaps = 30/557 (5%)

Query: 26  NILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHP 85
           ++ +  +  +   QLH+   KT +++ +  +++L SLY      +L  AR +FD    HP
Sbjct: 9   DLFQACNNGRSVSQLHSQVFKTGILHDTFFATKLNSLYAK--CASLQAARKVFDET-PHP 65

Query: 86  SLVLYNLLIKCYVFNQRSHEALTLF----CDLLDRFLLPDNFTLPCVIKGAARLGAIKEG 141
           ++ L+N  ++ Y   ++  E L LF    C   +    PDNFT+P  +K  A L  ++ G
Sbjct: 66  NVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEA---PDNFTIPIALKACAGLRMLELG 122

Query: 142 KQIHGLVFKLG-FGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVK 200
           K IHG   K    G D FV S+LV +Y+K G++    +VF+     D V W  ++ GY +
Sbjct: 123 KVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQ 182

Query: 201 KGEVEVAMKLFDEMPDRD--LFSWTCLVDGFSKCGKVEIARE-------IFYRMPNRNLV 251
             + E A+ LF +M   D  +     LV   S C ++   +        +  R  + +L 
Sbjct: 183 NNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLP 242

Query: 252 SWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGD 311
             N+++N Y K G    A  LF  M  +D+I+W++MIA Y  N    EAL L   M+   
Sbjct: 243 LVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKR 302

Query: 312 VLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESAL 371
             PN  T+VSAL A A    L +G+ +H   V  GF +D  + T LI MY KC   + A+
Sbjct: 303 FEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAV 362

Query: 372 TVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAG 431
            +F+ + KK V  W A++ G   +GMA +++ +F  M   G++P A+  + +L A S  G
Sbjct: 363 DLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELG 422

Query: 432 LVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSL 491
           +          ++   G    +     L+++  + G L +A    + M +R + VIW S+
Sbjct: 423 IFQQALCLHGYVVRS-GFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVR-DVVIWSSM 480

Query: 492 LSGARNHGNKDIGEYAANNLIK---VAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548
           ++    HG         + ++K   V P+ +    +LS    A    + +     M+   
Sbjct: 481 IAAYGIHGRGGEALEIFDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDY 540

Query: 549 GFRKDPGSSSIEHRGVL 565
             R D      EH G++
Sbjct: 541 QLRPDS-----EHFGIM 552



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 110/429 (25%), Positives = 181/429 (42%), Gaps = 106/429 (24%)

Query: 38   QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
            ++ HA      L Y S I ++   +YV    N +  A  +F+ I  +P   L+N++I+ +
Sbjct: 737  KKTHAKIFAYGLQYDSRILTKFAIMYVS--FNRIDAASIVFEDI-PNPCSFLWNVMIRGF 793

Query: 98   VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
              + R   +L L+  ++++ L PD F  P  +K  A L  ++ GK IH  +   G   D 
Sbjct: 794  ATDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDL 853

Query: 158  FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM--- 214
            FV ++LV MYAK G+I+  R VFD M  +DLVSW  +I GY   G     +  FD M   
Sbjct: 854  FVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSS 913

Query: 215  ---PDR---------------------------------DLFSWTCLVDGFSKCGKVEIA 238
               P+R                                 D+   T ++D +SKCG +++A
Sbjct: 914  GVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLA 973

Query: 239  REIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFM 298
            R +F     ++LV W+AMI  Y                             G   +GR  
Sbjct: 974  RCLFDETAGKDLVCWSAMIASY-----------------------------GIHGHGR-- 1002

Query: 299  EALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLI 358
            +A++L + M+   V P+  T    LSA +   +L +G+ M+  ++   FV+         
Sbjct: 1003 KAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGK-MYFQLMTEEFVI--------- 1052

Query: 359  QMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI 418
                                 +K+ ++  M+  LG  G  ++A+DL      M ++P A 
Sbjct: 1053 --------------------ARKLSNYACMVDLLGRAGQLSEAVDLIEN---MPVEPDAS 1089

Query: 419  TFIGVLNAC 427
             +  +L AC
Sbjct: 1090 IWGSLLGAC 1098


>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 237/638 (37%), Positives = 350/638 (54%), Gaps = 50/638 (7%)

Query: 100 NQRSHEALTLFC---------DLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFK 150
           ++R  E + LFC         D L R   P       +I    R   ++ GK++H     
Sbjct: 32  HRRFEEIIELFCQQNRLKEAVDYLHRIPQPSPRLYSTLIAACLRHRKLELGKRVHAHTKA 91

Query: 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
             F     + + L+ MYAK G +   + +FD +  KDL SWN +I GY   G +E A KL
Sbjct: 92  SNFIPGIVISNRLIHMYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARKL 151

Query: 211 FDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM-----PNRNL--------------- 250
           FDEMP RD FSW  ++ G+   G    A ++F  M      N N+               
Sbjct: 152 FDEMPHRDNFSWNAVISGYVSQGWYMEALDLFRMMQENESSNCNMFTLSSALAAAAAISS 211

Query: 251 --------------------VSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAG 290
                               V W A+++ Y K G ++ A  +FD M  +D+++W +MI  
Sbjct: 212 LRRGKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHR 271

Query: 291 YELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVD 350
              +GR  E   L   ++   V PN+ T    L+A A LA    G+ +H Y+ + G+   
Sbjct: 272 CFEDGRKKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPF 331

Query: 351 GVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCR 410
               + L+ +YSKCG+ E+A  VF  + +  +  WT++IVG   +G    AL  F  + R
Sbjct: 332 SFAASALVHVYSKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLR 391

Query: 411 MGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLE 470
            G KP  ITF+GVL+AC+HAGLV+ G  YF+ +   +G+  T +HY C++D+L R+G  +
Sbjct: 392 SGTKPDEITFVGVLSACTHAGLVDIGLEYFHSVKEKHGLVHTADHYACVIDLLARSGRFK 451

Query: 471 EAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYA 530
           EA++ I++MPM+P+  +W SLL G R HGN ++ E AA  L ++ P+    Y+ LSNIYA
Sbjct: 452 EAENIIDNMPMKPDKFLWASLLGGCRIHGNIELAERAAKALFELEPENPATYITLSNIYA 511

Query: 531 AAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRN 590
            AG W + ++VR  M  RG  K PG S IE +  +H F+VGD SHP+  +IH  L E+  
Sbjct: 512 NAGLWTEETKVRNDMDNRGIVKKPGKSWIEIKRQVHVFLVGDTSHPKISDIHEYLGELSK 571

Query: 591 KLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCN 650
           K+K  G+V DT  VL  +E++ +KE  +  HSE+LA+AFG+I+    +PI++ KNLR C 
Sbjct: 572 KMKEEGYVADTNFVLHDVEEE-QKEQNIFYHSEKLAVAFGIISTSPGTPIKVFKNLRTCV 630

Query: 651 DCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDF 688
           DCH+  K +S I  R+IIVRD++RFH F +GSCSCKD+
Sbjct: 631 DCHNAMKYISKIVQRKIIVRDSNRFHCFVDGSCSCKDY 668


>gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410
 gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana]
 gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 705

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 224/618 (36%), Positives = 367/618 (59%), Gaps = 12/618 (1%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           AR +FD ++   ++V +  L+K YV N +   A +LF  + ++    +  +   ++ G  
Sbjct: 98  ARKVFD-LMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEK----NKVSWTVMLIGFL 152

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
           + G I +  +++ ++       D    +S++    K G +D  R +FD M ++ +++W  
Sbjct: 153 QDGRIDDACKLYEMIPDK----DNIARTSMIHGLCKEGRVDEAREIFDEMSERSVITWTT 208

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSW 253
           ++ GY +   V+ A K+FD MP++   SWT ++ G+ + G++E A E+F  MP + +++ 
Sbjct: 209 MVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAEELFEVMPVKPVIAC 268

Query: 254 NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL 313
           NAMI+G  + G++  A  +FD M+ R+  +W ++I  +E NG  +EAL+L   M    V 
Sbjct: 269 NAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVR 328

Query: 314 PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTV 373
           P   TL+S LS  A LA L+ G+ +H+ +V+  F VD  + ++L+ MY KCG +  +  +
Sbjct: 329 PTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLI 388

Query: 374 FRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG-MKPTAITFIGVLNACSHAGL 432
           F     K +  W ++I G   HG+  +AL +F +M   G  KP  +TF+  L+ACS+AG+
Sbjct: 389 FDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGM 448

Query: 433 VNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLL 492
           V +G + +  M + +G++P   HY C+VD+L R G   EA   I+SM + P+  +W SLL
Sbjct: 449 VEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLL 508

Query: 493 SGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRK 552
              R H   D+ E+ A  LI++ P+  G Y++LSN+YA+ G+W  V+E+R++MK R  RK
Sbjct: 509 GACRTHSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWADVAELRKLMKTRLVRK 568

Query: 553 DPGSSSIEHRGVLHEFVVGD-KSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQ 611
            PG S  E    +H F  G   SHP+ + I   L E+   L+ AG+ PD +  L  + D+
Sbjct: 569 SPGCSWTEVENKVHAFTRGGINSHPEQESILKILDELDGLLREAGYNPDCSYALHDV-DE 627

Query: 612 KEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRD 671
           +EK   L+ HSERLA+A+ L+ +    PIR++KNLRVC+DCH+  K++S +  REII+RD
Sbjct: 628 EEKVNSLKYHSERLAVAYALLKLSEGIPIRVMKNLRVCSDCHTAIKIISKVKEREIILRD 687

Query: 672 NSRFHHFKNGSCSCKDFW 689
            +RFHHF+NG CSCKD+W
Sbjct: 688 ANRFHHFRNGECSCKDYW 705



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 119/411 (28%), Positives = 205/411 (49%), Gaps = 58/411 (14%)

Query: 133 ARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDL---GRRVFDAMDDKDLV 189
           +R+G I E +       KL    D   +SS  SM A +    +    R++FD M D++++
Sbjct: 28  SRIGKIHEAR-------KLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNII 80

Query: 190 SWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRN 249
           SWN L+ GY+K GE++ A K+FD MP+R++ SWT LV G+   GKV++A  +F++MP +N
Sbjct: 81  SWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKN 140

Query: 250 LVSWNAMINGYMKAGDVDSAC-------------------------------ELFDDMEI 278
            VSW  M+ G+++ G +D AC                               E+FD+M  
Sbjct: 141 KVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMSE 200

Query: 279 RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWM 338
           R +ITW +M+ GY  N R  +A ++       DV+P + T VS  S + G   +  GR  
Sbjct: 201 RSVITWTTMVTGYGQNNRVDDARKIF------DVMP-EKTEVSWTSMLMGY--VQNGRIE 251

Query: 339 HSYIVKNGFVVDGVLG-TLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGM 397
            +  +     V  V+    +I    + G I  A  VF ++ ++    W  +I     +G 
Sbjct: 252 DAEELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGF 311

Query: 398 ATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN-DYGIEPTIEHY 456
             +ALDLF  M + G++PT  T I +L+ C+    ++ G++    ++   + ++  +   
Sbjct: 312 ELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVA-- 369

Query: 457 GCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYA 507
             L+ +  + G L ++K   +  P + + ++W S++SG  +HG   +GE A
Sbjct: 370 SVLMTMYIKCGELVKSKLIFDRFPSK-DIIMWNSIISGYASHG---LGEEA 416



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 119/293 (40%), Gaps = 54/293 (18%)

Query: 254 NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL 313
           N  I    + G +  A +LFD  + + + +WNSM+AGY  N    +A +L + M      
Sbjct: 21  NVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEM------ 74

Query: 314 PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTV 373
             D  ++S               W       NG          L+  Y K G I+ A  V
Sbjct: 75  -PDRNIIS---------------W-------NG----------LVSGYMKNGEIDEARKV 101

Query: 374 FRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLV 433
           F  + ++ V  WTA++ G   +G    A  LF KM         +  IG L      G +
Sbjct: 102 FDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVSWTVMLIGFL----QDGRI 157

Query: 434 NDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLS 493
           +D  + + M+ +   I  T   +G     LC+ G ++EA+   + M  R + + W ++++
Sbjct: 158 DDACKLYEMIPDKDNIARTSMIHG-----LCKEGRVDEAREIFDEMSER-SVITWTTMVT 211

Query: 494 GARNHGNKDIGEYAANNLIKVAPD-TIGCYVVLSNIYAAAGQWDKVSEVREMM 545
           G   +   D     A  +  V P+ T   +  +   Y   G+ +   E+ E+M
Sbjct: 212 GYGQNNRVD----DARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAEELFEVM 260


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 228/625 (36%), Positives = 366/625 (58%), Gaps = 32/625 (5%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           A  +FD++     ++ +N +I  YV N  +   L ++  ++   +  D  T+  V+ G A
Sbjct: 204 ASELFDKLCDR-DVISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCA 262

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
             G +  GK +H L  K  F       ++L+ MY+K G++D   RVF+ M ++++VSW  
Sbjct: 263 NSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTS 322

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREI--FYRMPN 247
           +I GY + G  + A++L  +M       D+ + T ++   ++ G ++  +++  + +  N
Sbjct: 323 MIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKANN 382

Query: 248 --RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLE 305
              NL   NA+++ Y K G +D A  +F  M ++D+I+WN+MI                 
Sbjct: 383 MESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMI----------------- 425

Query: 306 TMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCG 365
               G++ P+  T+   L A A L+ L +G+ +H YI++NG+  D  +   L+ +Y KCG
Sbjct: 426 ----GELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCG 481

Query: 366 SIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN 425
            +  A  +F  I  K +  WT MI G GMHG   +A+  FN+M   G++P  ++FI +L 
Sbjct: 482 VLGLARLLFDMIPSKDLVSWTVMISGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILY 541

Query: 426 ACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNF 485
           ACSH+GL+  G R+F +M ND+ IEP +EHY C+VD+L RTG L +A   IE++P+ P+ 
Sbjct: 542 ACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDA 601

Query: 486 VIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMM 545
            IW +LL G R + + ++ E  A  + ++ P+  G YV+L+NIYA A +W++V  +RE +
Sbjct: 602 TIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKI 661

Query: 546 KKRGFRKDPGSSSIEHRGVLHEFVVG-DKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQV 604
            K+G RK+PG S IE +G ++ FV G + SHP + +I S L +MR K+K  G+ P T   
Sbjct: 662 GKKGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKYA 721

Query: 605 LLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYN 664
           L+   D+ +KE  L  HSE+LA+AFGL+ +  R  +R+ KNLRVC DCH + K +S    
Sbjct: 722 LI-NADEMQKEMALCGHSEKLAMAFGLLALPPRKTVRVTKNLRVCGDCHEMAKFMSKETR 780

Query: 665 REIIVRDNSRFHHFKNGSCSCKDFW 689
           REI++RD++RFHHFKNG CSC+ FW
Sbjct: 781 REIVLRDSNRFHHFKNGYCSCRGFW 805



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 84/288 (29%), Positives = 147/288 (51%), Gaps = 22/288 (7%)

Query: 225 LVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDV------------------ 266
           LV  ++ CG ++  R +F  M  +N+  WN M++ Y K GD                   
Sbjct: 140 LVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGK 199

Query: 267 --DSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS 324
             +SA ELFD +  RD+I+WNSMI+GY  NG     LE+ + M+   +  + AT++S L 
Sbjct: 200 RPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLV 259

Query: 325 AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGH 384
             A    L+ G+ +HS  +K+ F         L+ MYSKCG ++ AL VF  + ++ V  
Sbjct: 260 GCANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVS 319

Query: 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMI 444
           WT+MI G    G +  A+ L  +M + G+K   +    +L+AC+ +G +++G+   +  I
Sbjct: 320 WTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHD-YI 378

Query: 445 NDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLL 492
               +E  +     L+D+  + G ++ A S   +M ++ + + W +++
Sbjct: 379 KANNMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVK-DIISWNTMI 425


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 243/656 (37%), Positives = 371/656 (56%), Gaps = 37/656 (5%)

Query: 67  HINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRF-LLPDNFTL 125
           H+  LH    I       P  + +  +IKCY  +     +L  F +LL  F + PD    
Sbjct: 23  HVKQLH--AQIVKTTKATPHSLAWICIIKCYASHGLLRHSLASF-NLLRSFGISPDRHLF 79

Query: 126 PCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFG-------------- 171
           P +++ +         + +H  V +LGF FD +  ++L++MY+KF               
Sbjct: 80  PSLLRASTLFKHFNLAQSLHAAVIRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARH 139

Query: 172 --------EIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL---- 219
                   +ID  R++FD M  +D+VSWN +I G  + G  E A+ +  EM   +L    
Sbjct: 140 NHNNKYSVKIDSVRKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDS 199

Query: 220 FSWTCLVDGFSKCGKVEIAREIF-YRMP---NRNLVSWNAMINGYMKAGDVDSACELFDD 275
           F+ + ++  F++   V   +EI  Y +    ++++   +++I+ Y K   V+ +   F  
Sbjct: 200 FTLSSILPIFTEHANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHL 259

Query: 276 MEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKG 335
           +  RD I+WNS+IAG   NGRF + L     ML   V P   +  S + A A L  LN G
Sbjct: 260 LSNRDAISWNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLG 319

Query: 336 RWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS--KKKVGHWTAMIVGLG 393
           + +H+YI++ GF  +  + + L+ MY+KCG+I+ A  +F  I    + +  WTA+I+G  
Sbjct: 320 KQLHAYIIRLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCA 379

Query: 394 MHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTI 453
           MHG A  A+ LF +M   G+KP  + F+ VL ACSHAGLV++G +YFN M  D+G+ P +
Sbjct: 380 MHGHALDAVSLFEEMLVDGVKPCYVAFMAVLTACSHAGLVDEGWKYFNSMQRDFGVAPGL 439

Query: 454 EHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIK 513
           EHY  + D+L R G LEEA   I +M   P   +W +LL+  R H N ++ E   N ++ 
Sbjct: 440 EHYAAVADLLGRAGRLEEAYDFISNMGEEPTGSVWSTLLAACRAHKNIELAEKVVNKILL 499

Query: 514 VAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDK 573
           V P  +G +V++SNIY+AA +W   +++R  M+K G +K P  S IE    +H F+ GDK
Sbjct: 500 VDPGNMGAHVIMSNIYSAAQRWRDAAKLRVRMRKTGLKKTPACSWIEVGNKVHTFLAGDK 559

Query: 574 SHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLIN 633
           SHP  D+I+  L+ +  +++  G+V DT +VL  + D++ K   L  HSERLAIAFG+I+
Sbjct: 560 SHPYYDKINEALNILLEQMEKEGYVLDTNEVLHDV-DEEHKRDLLRTHSERLAIAFGIIS 618

Query: 634 VKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
             S + IR++KN+RVC DCH+  K ++ I  REIIVRDNSRFHHFKNGSCSC D+W
Sbjct: 619 TTSGTTIRVIKNIRVCVDCHTAIKFMAKIVGREIIVRDNSRFHHFKNGSCSCGDYW 674


>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 623

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 226/599 (37%), Positives = 353/599 (58%), Gaps = 8/599 (1%)

Query: 9   SSPIHALQQHLPSRL----HWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYV 64
           S+ I  L    P RL      ++L+   T K+  Q+ A  +     Y+  I+ +L+++  
Sbjct: 22  STEIDYLAPKPPHRLLEERFISLLQSCKTSKQVHQIQAQIIANGFQYNEYITPKLVTICA 81

Query: 65  DPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFT 124
              +  + YAR +FD+I   P++ L+N + + Y  ++   E + LF  +    + P+ FT
Sbjct: 82  T--LKRMTYARQLFDQI-PDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFT 138

Query: 125 LPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD 184
            P V+K   ++ A+ EG+Q+H  + K GF  + FV ++L+ MY+  G +    ++F  M 
Sbjct: 139 FPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMF 198

Query: 185 DKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYR 244
           ++++V+W  +I+GY+   ++  A +LFD  P+RD+  W  +V G+ + G +  AR++F+ 
Sbjct: 199 ERNVVAWTSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFHE 258

Query: 245 MPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELL 304
           MPNR+++ WN ++ GY   G+V++   LF++M  R++ +WN++I GY  NG F E L   
Sbjct: 259 MPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSF 318

Query: 305 ETMLI-GDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSK 363
           + ML   DV PNDATLV+ LSA A L  L+ G+W+H Y   +G   +  +G  L+ MY+K
Sbjct: 319 KRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAK 378

Query: 364 CGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGV 423
           CG IE+A++VFR +  K +  W  +I GL MH     AL+LF +M   G KP  ITFIG+
Sbjct: 379 CGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGI 438

Query: 424 LNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRP 483
           L AC+H GLV DG  YF  M +DY I P IEHYGC+VD+L R G LE+A + +  MP+  
Sbjct: 439 LCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEA 498

Query: 484 NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVRE 543
           + VIW  LL   R + N ++ E A   LI++ P     YV+LSNIY  AG+W+ V+ ++ 
Sbjct: 499 DGVIWAGLLGACRIYKNVELAELALQRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKV 558

Query: 544 MMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTT 602
            M+  GF+K PG S IE    + EF   D+ HPQ +EI+  L  +   L++ G+VPD T
Sbjct: 559 AMRDTGFKKLPGCSLIEVNDAVVEFYSLDERHPQIEEIYGVLRGLVKVLRSFGYVPDLT 617


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 238/663 (35%), Positives = 369/663 (55%), Gaps = 12/663 (1%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           +E + LHAL++++       +   L+ +Y       ++ A  +F +I ++P +V ++ +I
Sbjct: 68  REGKVLHALALRSGCEIDEFLGCSLVDMY--SKCGTVYDALKVFTKI-RNPDVVAWSAMI 124

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
                     EA  LF  +  +   P+ FTL  ++  A  +G ++ G+ IHG + K GF 
Sbjct: 125 TGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGFE 184

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
            D  V + L+ MY K   ++ G +VF+AM + DLVSWN L+ G+          ++F +M
Sbjct: 185 SDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQM 244

Query: 215 P----DRDLFSWTCLVDGFSKCGKVEIARE----IFYRMPNRNLVSWNAMINGYMKAGDV 266
                  ++F++  ++   S     E  ++    I     + +     A+++ Y KA  +
Sbjct: 245 LLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCL 304

Query: 267 DSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326
           + A   FD +  RD+ +W  +I+GY    +  +A++    M    + PN+ TL S LS  
Sbjct: 305 EDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGC 364

Query: 327 AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWT 386
           + +A L  GR +H+  VK G   D  +G+ L+ +Y KCG +E A  +F+ +  + +  W 
Sbjct: 365 SHMATLENGRQLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGLISRDIVSWN 424

Query: 387 AMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIND 446
            +I G   HG   +AL+ F  M   G+ P   TFIGVL+ACS  GLV +G++ F+ M   
Sbjct: 425 TIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSACSFMGLVEEGKKRFDSMSKI 484

Query: 447 YGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEY 506
           YGI P+IEHY C+VDIL R G   E K  IE M + P  +IW ++L   + HGN D GE 
Sbjct: 485 YGINPSIEHYACMVDILGRAGKFNEVKIFIEEMNLTPYSLIWETVLGACKLHGNVDFGEK 544

Query: 507 AANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLH 566
           AA  L ++ P     Y++LSNI+A+ G+WD V  +R +M  RG +K+PG S +E  G +H
Sbjct: 545 AAKKLFEMEPMMDSSYILLSNIFASKGRWDDVRNIRALMTSRGIKKEPGCSWVEVDGQVH 604

Query: 567 EFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLA 626
            F+  D SHP+  EI++KL ++   L + G+VP T  VL  + + KEK   L  HSERLA
Sbjct: 605 VFLSQDGSHPKIREIYAKLDKLGQSLMSIGYVPKTEVVLHNVSN-KEKMEHLYYHSERLA 663

Query: 627 IAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCK 686
           ++F L++  +  PIRI KNLR+C DCH   KL+S I N+EI+VRD  RFHHFK G+CSC+
Sbjct: 664 LSFALLSTNAVKPIRIFKNLRICEDCHDFMKLISDITNQEIVVRDIRRFHHFKRGTCSCQ 723

Query: 687 DFW 689
           D W
Sbjct: 724 DRW 726



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 123/430 (28%), Positives = 212/430 (49%), Gaps = 24/430 (5%)

Query: 88  VLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGL 147
           V +N L+  Y       + L LFC + +       FTL  V+KG A  G+++EGK +H L
Sbjct: 17  VSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCANTGSLREGKVLHAL 76

Query: 148 VFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVA 207
             + G   D+F+  SLV MY+K G +    +VF  + + D+V+W+ +I G  ++G  + A
Sbjct: 77  ALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAMITGLDQQGHGQEA 136

Query: 208 MKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREIF-----YRMPNRNLVSWNAMIN 258
            +LF  M  +    + F+ + LV   +  G +   + I      Y   + NLVS N +I 
Sbjct: 137 AELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGFESDNLVS-NPLIM 195

Query: 259 GYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDAT 318
            YMK+  V+   ++F+ M   DL++WN++++G+  +        +   ML+    PN  T
Sbjct: 196 MYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFT 255

Query: 319 LVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS 378
            +S L + + L     G+ +H++I+KN    D  +GT L+ MY+K   +E A   F  + 
Sbjct: 256 FISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRLV 315

Query: 379 KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR 438
            + +  WT +I G      A +A+  F +M R G+KP   T    L+ CSH   + +GR+
Sbjct: 316 NRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQ 375

Query: 439 YFNMMINDYGIEPTIEHYG------CLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLL 492
                   + +     H+G       LVD+  + G +E A++  + +  R + V W +++
Sbjct: 376 L-------HAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGLISR-DIVSWNTII 427

Query: 493 SGARNHGNKD 502
           SG   HG  +
Sbjct: 428 SGYSQHGQGE 437



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 155/331 (46%), Gaps = 12/331 (3%)

Query: 173 IDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDG 228
           ++L  R+F  M +K+ VSWN L++GY + G+ +  +KLF +M + +     F+ + ++ G
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKG 60

Query: 229 FSKCGKVEIAREIFYRMPNRNLVSWN-----AMINGYMKAGDVDSACELFDDMEIRDLIT 283
            +  G +   + + + +  R+    +     ++++ Y K G V  A ++F  +   D++ 
Sbjct: 61  CANTGSLREGK-VLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVA 119

Query: 284 WNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIV 343
           W++MI G +  G   EA EL   M      PN  TL S +S    +  L  G+ +H  I 
Sbjct: 120 WSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCIC 179

Query: 344 KNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALD 403
           K GF  D ++   LI MY K   +E    VF A++   +  W A++ G        +   
Sbjct: 180 KYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPR 239

Query: 404 LFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDIL 463
           +F +M   G KP   TFI VL +CS       G++    +I +   +        LVD+ 
Sbjct: 240 IFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTA-LVDMY 298

Query: 464 CRTGYLEEAKSTIESMPMRPNFVIWMSLLSG 494
            +   LE+A    + +  R  F  W  ++SG
Sbjct: 299 AKARCLEDAGVAFDRLVNRDIFS-WTVIISG 328



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 107/227 (47%), Gaps = 14/227 (6%)

Query: 32  STHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYN 91
           +T +  +QLHA++VK        + S L+ LY       + +A +IF  ++    +V +N
Sbjct: 368 ATLENGRQLHAVAVKAGHFGDIFVGSALVDLY--GKCGCMEHAEAIFKGLISR-DIVSWN 424

Query: 92  LLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKL 151
            +I  Y  + +  +AL  F  +L   ++PD  T   V+   + +G ++EGK+    + K+
Sbjct: 425 TIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSACSFMGLVEEGKKRFDSMSKI 484

Query: 152 GFGFDKFV--LSSLVSMYAKFGEIDLGRRVFDAMDDK------DLVSWNCLIDGYVKKGE 203
            +G +  +   + +V +  + G+ +  +   + M+        + V   C + G V  GE
Sbjct: 485 -YGINPSIEHYACMVDILGRAGKFNEVKIFIEEMNLTPYSLIWETVLGACKLHGNVDFGE 543

Query: 204 VEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNL 250
            + A KLF+  P  D  S+  L + F+  G+ +  R I   M +R +
Sbjct: 544 -KAAKKLFEMEPMMDS-SYILLSNIFASKGRWDDVRNIRALMTSRGI 588


>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 683

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 236/609 (38%), Positives = 347/609 (56%), Gaps = 47/609 (7%)

Query: 28  LKFSSTHKETQQLHALSVKTNLIYHSGISS--RLLSLYVDPHINNLHYARSIFDRILQHP 85
           LK   +    +Q+HA   +  L  H  I S  +L++   DP   NL+YA  +F + +++P
Sbjct: 44  LKSCKSMTHLKQIHAQIFRVGL--HQDIVSLNKLMAFCTDPFNGNLNYAEKMF-KYIRYP 100

Query: 86  SLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIH 145
            L++YNL+IK +         L LF  L +  L PDNFT P V K    LG + + +++ 
Sbjct: 101 CLLIYNLIIKAFAKKGNYKRTLVLFSKLREDGLWPDNFTYPFVFKAIGYLGEVSKAEKLR 160

Query: 146 GLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVE 205
           GLV K G  FD +V +SL+ MYA+    D+ + +FD M D+D++SWN +I GYVK    E
Sbjct: 161 GLVTKTGLEFDTYVRNSLIDMYAQLALTDVMKMLFDEMPDRDVISWNVMISGYVKCRRFE 220

Query: 206 VAMKLFDEM-------PD---------------------------RDLFSWT-----CLV 226
            A+ +F  M       PD                           RD   +T      L+
Sbjct: 221 DAINVFCRMQEESGLMPDEATVVSTLSACTALKRLELGKKIHHYVRDNVKFTPIIGNALL 280

Query: 227 DGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNS 286
           D + KCG + IAR +F  MP++N++ W  M++GY   G+++ A ELF+   IRD++ W +
Sbjct: 281 DMYCKCGCLSIARAVFEEMPSKNVICWTTMVSGYANCGELEEARELFEGSPIRDVVIWTA 340

Query: 287 MIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNG 346
           MI GY    RF EA+ L   M I  V P+   +VS L+  A    + +G+W+H +I +N 
Sbjct: 341 MINGYVQFNRFDEAVALFREMQIRKVKPDKFIVVSLLTGCAQTGAIEQGKWIHEFIDENR 400

Query: 347 FVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFN 406
             +D V+GT LI+MY+KCG IE AL +F  +  K    WT++I GL M+G  ++AL+LF+
Sbjct: 401 IPIDAVVGTALIEMYAKCGFIEKALEIFYGLRVKDTASWTSIICGLAMNGKTSKALELFS 460

Query: 407 KMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRT 466
           KM + G++P  ITFIGVL+ACSH GLV +GR++FN M  +Y I+P +EHYGCLVD+L R 
Sbjct: 461 KMKQAGVRPDDITFIGVLSACSHGGLVEEGRKFFNSMRMEYQIKPKVEHYGCLVDLLGRA 520

Query: 467 GYLEEAKSTIESMPMRPNFV---IWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYV 523
           G L EA+  I+ +P     +   ++ SLLS  R +GN ++GE  A  L+K        + 
Sbjct: 521 GLLNEAEELIKKIPDENKAITVPLYGSLLSACRIYGNVEMGERVAKQLVKFESSDSSVHT 580

Query: 524 VLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHS 583
           +L+NIYA A +W+ V++VR  MK  G +K PG SSIE   ++HEF  G  SHP+  EI+ 
Sbjct: 581 LLANIYAFADRWEDVTKVRRKMKDLGVKKTPGCSSIEVDSIIHEFFSGHPSHPEMREIYY 640

Query: 584 KLSEMRNKL 592
            L+ M   L
Sbjct: 641 MLNIMAKPL 649


>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
 gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
 gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
 gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 246/669 (36%), Positives = 386/669 (57%), Gaps = 30/669 (4%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           QQ+H +++K  L     +S+ L+++Y    +    +AR++FD + +   L+ +N +I   
Sbjct: 335 QQVHCMALKLGLDLMLTVSNSLINMYC--KLRKFGFARTVFDNMSER-DLISWNSVIAGI 391

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLG-AIKEGKQIHGLVFKLGFGFD 156
             N    EA+ LF  LL   L PD +T+  V+K A+ L   +   KQ+H    K+    D
Sbjct: 392 AQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSD 451

Query: 157 KFVLSSLVSMYA-----KFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLF 211
            FV ++L+  Y+     K  EI   R  FD      LV+WN ++ GY +  +    +KLF
Sbjct: 452 SFVSTALIDAYSRNRCMKEAEILFERHNFD------LVAWNAMMAGYTQSHDGHKTLKLF 505

Query: 212 DEMPDR----DLFSWTCLVDGFSKCG---KVEIAREI--FYRMPNRNLVSW--NAMINGY 260
             M  +    D F+   L   F  CG    +   +++  +      +L  W  + +++ Y
Sbjct: 506 ALMHKQGERSDDFT---LATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMY 562

Query: 261 MKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLV 320
           +K GD+ +A   FD + + D + W +MI+G   NG    A  +   M +  VLP++ T+ 
Sbjct: 563 VKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIA 622

Query: 321 SALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKK 380
           +   A + L  L +GR +H+  +K     D  +GT L+ MY+KCGSI+ A  +F+ I   
Sbjct: 623 TLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMM 682

Query: 381 KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYF 440
            +  W AM+VGL  HG   + L LF +M  +G+KP  +TFIGVL+ACSH+GLV++  ++ 
Sbjct: 683 NITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHM 742

Query: 441 NMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGN 500
             M  DYGI+P IEHY CL D L R G +++A++ IESM M  +  ++ +LL+  R  G+
Sbjct: 743 RSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGD 802

Query: 501 KDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIE 560
            + G+  A  L+++ P     YV+LSN+YAAA +WD++   R MMK    +KDPG S IE
Sbjct: 803 TETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIE 862

Query: 561 HRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELEN 620
            +  +H FVV D+S+ QT+ I+ K+ +M   +K  G+VP+T   L+ +E++ EKE  L  
Sbjct: 863 VKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLVDVEEE-EKERALYY 921

Query: 621 HSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKN 680
           HSE+LA+AFGL++    +PIR++KNLRVC DCH+  K ++ +YNREI++RD +RFH FK+
Sbjct: 922 HSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRDANRFHRFKD 981

Query: 681 GSCSCKDFW 689
           G CSC D+W
Sbjct: 982 GICSCGDYW 990



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 127/484 (26%), Positives = 224/484 (46%), Gaps = 23/484 (4%)

Query: 97  YVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFD 156
           Y+ + +    L  F D+++  +  D  T   ++  A ++ ++  G+Q+H +  KLG    
Sbjct: 290 YLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLM 349

Query: 157 KFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKG-EVEVA---MKLFD 212
             V +SL++MY K  +    R VFD M ++DL+SWN +I G  + G EVE     M+L  
Sbjct: 350 LTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLR 409

Query: 213 EMPDRDLFSWTCLVDGFSKCGK-VEIAREIFYRMPNRNLVS----WNAMINGYMKAGDVD 267
                D ++ T ++   S   + + +++++       N VS      A+I+ Y +   + 
Sbjct: 410 CGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMK 469

Query: 268 SACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVA 327
            A  LF+     DL+ WN+M+AGY  +    + L+L   M       +D TL +      
Sbjct: 470 EAEILFERHNF-DLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCG 528

Query: 328 GLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTA 387
            L  +N+G+ +H+Y +K+G+ +D  + + ++ MY KCG + +A   F +I       WT 
Sbjct: 529 FLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTT 588

Query: 388 MIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR-YFNMMIND 446
           MI G   +G   +A  +F++M  MG+ P   T   +  A S    +  GR+ + N +  +
Sbjct: 589 MISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLN 648

Query: 447 YGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGN--KDIG 504
              +P +     LVD+  + G +++A    + + M  N   W ++L G   HG   + + 
Sbjct: 649 CTNDPFVG--TSLVDMYAKCGSIDDAYCLFKRIEMM-NITAWNAMLVGLAQHGEGKETLQ 705

Query: 505 EYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPG-SSSIEHRG 563
            +     + + PD +    VLS    A      VSE  + M  R    D G    IEH  
Sbjct: 706 LFKQMKSLGIKPDKVTFIGVLS----ACSHSGLVSEAYKHM--RSMHGDYGIKPEIEHYS 759

Query: 564 VLHE 567
            L +
Sbjct: 760 CLAD 763



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 141/578 (24%), Positives = 245/578 (42%), Gaps = 75/578 (12%)

Query: 59  LLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRS-----HEALTLFCDL 113
           L+S+Y      +L YAR +FD+ +    LV +N ++  Y  +         +A  LF  L
Sbjct: 80  LISMY--SKCGSLTYARRVFDK-MPDRDLVSWNSILAAYAQSSECVVENIQQAFLLFRIL 136

Query: 114 LDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEI 173
               +     TL  ++K     G +   +  HG   K+G   D+FV  +LV++Y KFG++
Sbjct: 137 RQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIGLDGDEFVAGALVNIYLKFGKV 196

Query: 174 DLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCG 233
             G+ +F+ M  +D+V WN ++  Y++ G  E A+ L        L              
Sbjct: 197 KEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGL-------------- 242

Query: 234 KVEIAREIFYRMPNRNLVSWNAMING-YMKAGDVDSACELFDDMEIRDLITWNSMIAGYE 292
                       PN   +   A I+G    AG V S     D   + ++I  N  ++ Y 
Sbjct: 243 -----------NPNEITLRLLARISGDDSDAGQVKSFANGNDASSVSEIIFRNKGLSEYL 291

Query: 293 LNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV 352
            +G++   L+    M+  DV  +  T +  L+    +  L  G+ +H   +K G  +   
Sbjct: 292 HSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLT 351

Query: 353 LGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG 412
           +   LI MY K      A TVF  +S++ +  W ++I G+  +G+  +A+ LF ++ R G
Sbjct: 352 VSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCG 411

Query: 413 MKPTAITFIGVLNACSH--AGLVNDGRRYFNMM----INDYGIEPTIEHYGCLVDILCRT 466
           +KP   T   VL A S    GL    + + + +    ++D  +         L+D   R 
Sbjct: 412 LKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTA------LIDAYSRN 465

Query: 467 GYLEEAKSTIESMPMRPNF--VIWMSLLSG-ARNH-GNKDIGEYAANNLIKVAPDTIGCY 522
             ++EA+   E    R NF  V W ++++G  ++H G+K +  +A  +      D     
Sbjct: 466 RCMKEAEILFE----RHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDF--- 518

Query: 523 VVLSNIYAAAG---QWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFV-VGDKSHPQT 578
             L+ ++   G     ++  +V     K G+  D   SS    G+L  +V  GD S  Q 
Sbjct: 519 -TLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSS----GILDMYVKCGDMSAAQF 573

Query: 579 DEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEA 616
                      + +     V  TT +  CIE+ +E+ A
Sbjct: 574 ---------AFDSIPVPDDVAWTTMISGCIENGEEERA 602


>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 829

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 236/628 (37%), Positives = 373/628 (59%), Gaps = 20/628 (3%)

Query: 75  RSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAAR 134
           R +FD + +  ++V++ LLI  Y  +  S EA+ LF D+L+    PD +TL  ++     
Sbjct: 209 RRVFDGLFER-TVVVWTLLITRYAQSGYSDEAVELFLDMLENGFQPDQYTLSSMLSACTE 267

Query: 135 LGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKF---GEIDLGRRVFDAMDDKDLVSW 191
           LG+ + G+Q+H L  +LG   D  V   LV MYAK      +   R VF+ M   ++++W
Sbjct: 268 LGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYAKSHNGQSLHNAREVFNRMPKHNVMAW 327

Query: 192 NCLIDGYVKKGEVE-VAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMP 246
             L+ GYV++G  +   M LF +M +  +     +++ ++   +  G  +  R+I     
Sbjct: 328 TALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKACANLGDQDSGRQIHTHCV 387

Query: 247 NRNL----VSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALE 302
             NL    V  NA+++ Y ++G ++ A   FD +  +++++++  + G   +  + +   
Sbjct: 388 KSNLADLNVVGNALVSMYAESGSIEEARHAFDQLYEKNMVSFSGNLDGDGRSNTYQD--Y 445

Query: 303 LLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYS 362
            +E M +G    +  T  S +SA A + +L KG+ +H+  +K GF  D  +G  L+ MYS
Sbjct: 446 QIERMELG---ISTFTFGSLISAAASVGMLTKGQRLHALSLKAGFGSDRAIGNSLVSMYS 502

Query: 363 KCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIG 422
           +CG +  A  VF  ++   V  WT+MI GL  HG A +AL+LF+ M   G+KP  +T+I 
Sbjct: 503 RCGYLVDACQVFDEMNDHNVISWTSMISGLAKHGYAARALELFHDMIAAGVKPNDVTYIA 562

Query: 423 VLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMR 482
           VL+ACSHAGLV +G+ +F MM   +G+ P +EHY C+VD+L R+G +E+A   I  MP +
Sbjct: 563 VLSACSHAGLVKEGKEHFRMMQKHHGLIPRMEHYACMVDLLGRSGLVEDALDFINEMPCQ 622

Query: 483 PNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVR 542
            + ++W +LL   + H N DIGE AAN++I++ P     YV+LSN+YA AG WD+V+ +R
Sbjct: 623 VDALVWKTLLGACKTHNNMDIGEIAANHVIQLEPQDPAPYVLLSNLYAEAGLWDQVARIR 682

Query: 543 EMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTT 602
            +M+ +   K+ G S +     +HEF  GD SHPQ +EI++KL  +  ++K  G+VPDT+
Sbjct: 683 SLMRDKNLMKEKGLSWMHVDNTIHEFRAGDTSHPQAEEIYTKLETLIREIKVMGYVPDTS 742

Query: 603 QVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRS-PIRIVKNLRVCNDCHSVTKLLSG 661
            VL  + D+  KE  L  HSE++A+AFGLI+  S + PIRI KNLRVC DCHS  K +S 
Sbjct: 743 VVLHDMSDEL-KELCLLQHSEKIAVAFGLISCTSATKPIRIFKNLRVCVDCHSALKYVSK 801

Query: 662 IYNREIIVRDNSRFHHFKNGSCSCKDFW 689
              REII+RD++RFH  K+G CSC ++W
Sbjct: 802 ATGREIILRDSNRFHRMKDGECSCGEYW 829



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 155/567 (27%), Positives = 246/567 (43%), Gaps = 102/567 (17%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRI-LQHPSLVLYNLLIKCY 97
           Q H L   + L   + +++ LL+LY     + +  ARS+FD + +    LV +  +  C 
Sbjct: 70  QGHLLRTGSLLETDAVVANSLLTLY--SKCSAVAAARSVFDGMPVGLRDLVSWTAMASCL 127

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKG--AARLGAIKEGKQIHGLVFKLGF-G 154
             N    EAL LF + L+  LLP+ FTL    +   A+ L  +  G  + GLVFKLGF G
Sbjct: 128 SRNGAEAEALRLFGETLEEGLLPNAFTLCAATQACFASELFHLA-GGAVLGLVFKLGFWG 186

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
            D  V  +L+ M+AK G++   RRVFD + ++ +V W  LI  Y + G  + A++LF +M
Sbjct: 187 TDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVELFLDM 246

Query: 215 ------PDRDLFS---WTCL---------------------VDGFSKCGKVEI------- 237
                 PD+   S     C                       D    CG V++       
Sbjct: 247 LENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYAKSHNG 306

Query: 238 -----AREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYE 292
                ARE+F RMP  N+++W A+++GY++ G  D+                        
Sbjct: 307 QSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDN------------------------ 342

Query: 293 LNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV 352
                 + + L   ML   + PN  T  S L A A L   + GR +H++ VK+      V
Sbjct: 343 ------QVMILFCKMLNEGIRPNHITYSSMLKACANLGDQDSGRQIHTHCVKSNLADLNV 396

Query: 353 LGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG 412
           +G  L+ MY++ GSIE A   F  + +K +  ++  + G    G +    D   ++ RM 
Sbjct: 397 VGNALVSMYAESGSIEEARHAFDQLYEKNMVSFSGNLDG---DGRSNTYQDY--QIERME 451

Query: 413 MKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN-DYGIEPTIEHYGCLVDILCRTGYLEE 471
           +  +  TF  +++A +  G++  G+R   + +   +G +  I +   LV +  R GYL +
Sbjct: 452 LGISTFTFGSLISAAASVGMLTKGQRLHALSLKAGFGSDRAIGN--SLVSMYSRCGYLVD 509

Query: 472 AKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNL--------IKVAPDTIGCYV 523
           A    + M    N + W S++SG   HG      YAA  L          V P+ +    
Sbjct: 510 ACQVFDEMN-DHNVISWTSMISGLAKHG------YAARALELFHDMIAAGVKPNDVTYIA 562

Query: 524 VLSNIYAAAGQWDKVSEVREMMKKRGF 550
           VLS    A    +     R M K  G 
Sbjct: 563 VLSACSHAGLVKEGKEHFRMMQKHHGL 589



 Score =  125 bits (314), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 117/441 (26%), Positives = 194/441 (43%), Gaps = 38/441 (8%)

Query: 138 IKEGKQIHGLVFKLG--FGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD--KDLVSWNC 193
           I  G+ + G + + G     D  V +SL+++Y+K   +   R VFD M    +DLVSW  
Sbjct: 63  IHLGRALQGHLLRTGSLLETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTA 122

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVE--IAREIFYRMPNR--- 248
           +     + G    A++LF E  +  L     L + F+ C   +   A E+F+        
Sbjct: 123 MASCLSRNGAEAEALRLFGETLEEGL-----LPNAFTLCAATQACFASELFHLAGGAVLG 177

Query: 249 ---NLVSWN-------AMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFM 298
               L  W        A+I+ + K GD+ +   +FD +  R ++ W  +I  Y  +G   
Sbjct: 178 LVFKLGFWGTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSD 237

Query: 299 EALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLI 358
           EA+EL   ML     P+  TL S LSA   L     G+ +HS  ++ G   D  +   L+
Sbjct: 238 EAVELFLDMLENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLV 297

Query: 359 QMYSKC---GSIESALTVFRAISKKKVGHWTAMIVGLGMHG-MATQALDLFNKMCRMGMK 414
            MY+K     S+ +A  VF  + K  V  WTA++ G    G    Q + LF KM   G++
Sbjct: 298 DMYAKSHNGQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIR 357

Query: 415 PTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKS 474
           P  IT+  +L AC++ G  + GR+     +     +  +     LV +   +G +EEA+ 
Sbjct: 358 PNHITYSSMLKACANLGDQDSGRQIHTHCVKSNLADLNVVG-NALVSMYAESGSIEEARH 416

Query: 475 TIESMPMRPNFVIWMSLLSG-ARNHGNKDIGEYAANNL-IKVAPDTIGCYVVLSNIYAAA 532
             + +    N V +   L G  R++  +D   Y    + + ++  T G  +   +  A+ 
Sbjct: 417 AFDQL-YEKNMVSFSGNLDGDGRSNTYQD---YQIERMELGISTFTFGSLI---SAAASV 469

Query: 533 GQWDKVSEVREMMKKRGFRKD 553
           G   K   +  +  K GF  D
Sbjct: 470 GMLTKGQRLHALSLKAGFGSD 490


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 251/702 (35%), Positives = 387/702 (55%), Gaps = 70/702 (9%)

Query: 55  ISSRLLSLYVDPHINNLHYARSIFDRILQH--PSLVLYNLLIKCYVFNQRSHEALTLFCD 112
           I + L+++Y      +L  A  IFD I Q     ++ +N ++  +V +  +  AL LF  
Sbjct: 154 ICNALVAMY--SRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSK 211

Query: 113 L-LDRFLLPDN-----FTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSM 166
           + L     P N      ++  ++     L A+ + K++HG   + G   D FV ++L+  
Sbjct: 212 MTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDA 271

Query: 167 YAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR----DLFSW 222
           YAK G ++   +VF+ M+ KD+VSWN ++ GY + G  + A +LF  M       D+ +W
Sbjct: 272 YAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTW 331

Query: 223 TCLVDGFSKCGKVEIAREIFYRM------PN----------------------------- 247
           T ++ G+S+ G    A  +F +M      PN                             
Sbjct: 332 TAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLK 391

Query: 248 --------------RNLVSWNAMINGYMKAGDVDSACELFDD--MEIRDLITWNSMIAGY 291
                          +L+ +NA+I+ Y K     +A  +FDD  +E R+++TW  MI G+
Sbjct: 392 NCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGH 451

Query: 292 ELNGRFMEALELLETMLIGD--VLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVV 349
              G   +AL+L   M+     V PN  T+   L A A LA +  G+ +H+Y++++    
Sbjct: 452 AQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYD 511

Query: 350 DGV--LGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNK 407
                +   LI MYSKCG +++A  VF ++S+K    WT+M+ G GMHG  ++ALD+F+K
Sbjct: 512 SSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDK 571

Query: 408 MCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTG 467
           M + G  P  ITF+ VL ACSH G+V+ G  YF+ M  DYG+ P  EHY   +D+L R G
Sbjct: 572 MRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFG 631

Query: 468 YLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSN 527
            L++A  T++ MPM P  V+W++LLS  R H N ++ E+A N L+++  +  G Y ++SN
Sbjct: 632 RLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISN 691

Query: 528 IYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSE 587
           IYA AG+W  V+ +R +MKK G +K PG S ++ +     F VGD+SHP + +I++ L  
Sbjct: 692 IYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLES 751

Query: 588 MRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLR 647
           + +++KA G+VP+T   L  + D++EK   L  HSE+LA+A+GL+      PIRI KNLR
Sbjct: 752 LIDRIKAMGYVPETNFALHDV-DEEEKNNLLVEHSEKLALAYGLLTTFPGCPIRITKNLR 810

Query: 648 VCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           VC DCHS    +S I + EI+VRD SRFHHFKNGSCSC  +W
Sbjct: 811 VCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 852



 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 149/522 (28%), Positives = 252/522 (48%), Gaps = 71/522 (13%)

Query: 73  YARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGA 132
           YA  + +R+   P+ V +NLLI+ ++   R   A+ + C +L      D+FTLP V+K  
Sbjct: 69  YALLVLERVTPSPA-VWWNLLIREHIKQGRLDSAINVSCRMLRAGTRLDHFTLPHVLKAC 127

Query: 133 ARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK---DLV 189
             L + + G   HGL+   GF  + F+ ++LV+MY++ G ++    +FD +  +   D++
Sbjct: 128 GELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVI 187

Query: 190 SWNCLIDGYVKKGEVEVAMKLFDEM-------------------------------PDR- 217
           SWN ++  +VK      A+ LF +M                               P   
Sbjct: 188 SWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTK 247

Query: 218 -------------DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAG 264
                        D+F    L+D ++KCG +E A ++F  M  +++VSWNAM+ GY ++G
Sbjct: 248 EVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSG 307

Query: 265 DVDSACELFDDMEIR----DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLV 320
           +  +A ELF +M       D++TW ++IAGY   G   EAL +   M+    LPN  T++
Sbjct: 308 NFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTII 367

Query: 321 SALSAVAGLAVLNKGRWMHSYIVKNGFVV----------DGVLGTLLIQMYSKCGSIESA 370
           S LSA A L   ++G  +H+Y +KN  +           D ++   LI MYSKC S ++A
Sbjct: 368 SVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAA 427

Query: 371 LTVFRAI--SKKKVGHWTAMIVGLGMHGMATQALDLFNKMCR--MGMKPTAITFIGVLNA 426
            ++F  I   ++ V  WT MI G   +G +  AL LF +M     G+ P A T   +L A
Sbjct: 428 RSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMA 487

Query: 427 CSHAGLVNDGRRYFNMMINDYGIEPTIEHYG-CLVDILCRTGYLEEAKSTIESMPMRPNF 485
           C+H   +  G++    ++  +  + +      CL+++  + G ++ A+   +SM  + + 
Sbjct: 488 CAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQK-SA 546

Query: 486 VIWMSLLSGARNHGNKDIGEYAANNLIKVA--PDTIGCYVVL 525
           + W S+++G   HG         + + K    PD I   VVL
Sbjct: 547 ISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVL 588



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 99/407 (24%), Positives = 178/407 (43%), Gaps = 68/407 (16%)

Query: 161 SSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM----PD 216
           + +V+ Y   G  D    V + +     V WN LI  ++K+G ++ A+ +   M      
Sbjct: 55  TGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTR 114

Query: 217 RDLFSWTCLVDGFSKCGKVEIAR--EIFYRMP-----NRNLVSWNAMINGYMKAGDVDSA 269
            D F+   L      CG++   R    F+ +        N+   NA++  Y + G ++ A
Sbjct: 115 LDHFT---LPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEA 171

Query: 270 CELFDDMEIR---DLITWNSMIAGYELNGRFMEALELLETM-LIGDVLPNDA-----TLV 320
             +FD++  R   D+I+WNS+++ +  +     AL+L   M LI    P +      ++V
Sbjct: 172 SMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIV 231

Query: 321 SALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKK 380
           + L A   L  + + + +H   ++NG  +D  +G  LI  Y+KCG +E+A+ VF  +  K
Sbjct: 232 NILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFK 291

Query: 381 KV--------GH---------------------------WTAMIVGLGMHGMATQALDLF 405
            V        G+                           WTA+I G    G + +AL++F
Sbjct: 292 DVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVF 351

Query: 406 NKMCRMGMKPTAITFIGVLNACSHAGLVNDG--------RRYFNMMINDYGIE-PTIEHY 456
            +M   G  P  +T I VL+AC+  G  + G        +     + ND+G E   +  Y
Sbjct: 352 RQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVY 411

Query: 457 GCLVDILCRTGYLEEAKSTIESMPMRP-NFVIWMSLLSGARNHGNKD 502
             L+D+  +    + A+S  + +P+   N V W  ++ G   +G+ +
Sbjct: 412 NALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSN 458



 Score = 47.8 bits (112), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 62/150 (41%), Gaps = 3/150 (2%)

Query: 347 FVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFN 406
           F+    LGT ++  Y  CG+ + AL V   ++      W  +I      G    A+++  
Sbjct: 47  FISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSC 106

Query: 407 KMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRT 466
           +M R G +    T   VL AC        G  +  ++  + G E  +     LV +  R 
Sbjct: 107 RMLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCN-GFESNVFICNALVAMYSRC 165

Query: 467 GYLEEAKSTIESMPMR--PNFVIWMSLLSG 494
           G LEEA    + +  R   + + W S++S 
Sbjct: 166 GSLEEASMIFDEITQRGIDDVISWNSIVSA 195


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Glycine max]
          Length = 1047

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 240/660 (36%), Positives = 378/660 (57%), Gaps = 12/660 (1%)

Query: 38   QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
            +Q H+ ++K  +     +   LL LYV    +++  A   F    +  ++VL+N+++  Y
Sbjct: 392  KQFHSYAIKAGMSSDIILEGALLDLYVK--CSDIKTAHEFFLST-ETENVVLWNVMLVAY 448

Query: 98   VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
                  +E+  +F  +    + P+ FT P +++  + L A+  G+QIH  V K GF F+ 
Sbjct: 449  GLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNV 508

Query: 158  FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
            +V S L+ MYAK G++D   ++F  + +KD+VSW  +I GY +  +   A+ LF EM D+
Sbjct: 509  YVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQ 568

Query: 218  DLFSWTC-LVDGFSKCGKVE-------IAREIFYRMPNRNLVSWNAMINGYMKAGDVDSA 269
             + S         S C  ++       I  +      + +L   NA+++ Y + G V  A
Sbjct: 569  GIHSDNIGFASAISACAGIQALNQGQQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDA 628

Query: 270  CELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGL 329
               FD +  +D I+WNS+I+G+  +G   EAL L   M       N  T   A+SA A +
Sbjct: 629  YFAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANV 688

Query: 330  AVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMI 389
            A +  G+ +H+ I+K G   +  +  +LI +Y+KCG+I+ A   F  + +K    W AM+
Sbjct: 689  ANVKLGKQIHAMIIKTGHDSETEVSNVLITLYAKCGNIDDAERQFFEMPEKNEISWNAML 748

Query: 390  VGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGI 449
             G   HG   +AL LF  M ++G+ P  +TF+GVL+ACSH GLV++G +YF  M   +G+
Sbjct: 749  TGYSQHGHGFKALSLFEDMKQLGVLPNHVTFVGVLSACSHVGLVDEGIKYFQSMREVHGL 808

Query: 450  EPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAAN 509
             P  EHY C+VD+L R+G L  A+  +E MP++P+ ++  +LLS    H N DIGE+AA+
Sbjct: 809  VPKPEHYACVVDLLGRSGLLSRARRFVEEMPIQPDAMVCRTLLSACIVHKNIDIGEFAAS 868

Query: 510  NLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFV 569
            +L+++ P     YV+LSN+YA  G+W      R+MMK RG +K+PG S IE    +H F 
Sbjct: 869  HLLELEPKDSATYVLLSNMYAVTGKWGCRDRTRQMMKDRGVKKEPGRSWIEVNNSVHAFF 928

Query: 570  VGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAF 629
             GD+ HP  D+I+  L ++       G++P T  +L   E +++   ++  HSE+LAIAF
Sbjct: 929  AGDQKHPNVDKIYEYLRDLNELAAENGYIPQTNSLLNDAERRQKGPTQI-IHSEKLAIAF 987

Query: 630  GLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            GL+++ S +PI + KNLRVC DCH+  K +S I +R I+VRD+ RFHHFK G CSCKD+W
Sbjct: 988  GLLSLSSSTPIHVFKNLRVCGDCHNWIKYVSKISDRVIVVRDSYRFHHFKGGICSCKDYW 1047



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 131/503 (26%), Positives = 246/503 (48%), Gaps = 15/503 (2%)

Query: 34  HKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLL 93
           +K  +QLH L +K      + + + L++LY    + N   A  +F+ +LQ    V YN L
Sbjct: 287 YKVGEQLHGLVLKQGFSLETYVCNALVTLY--SRLGNFIPAEQVFNAMLQRDE-VSYNSL 343

Query: 94  IKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGF 153
           I        S +AL LF  +    L PD  T+  ++   + +GA+  GKQ H    K G 
Sbjct: 344 ISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGM 403

Query: 154 GFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDE 213
             D  +  +L+ +Y K  +I      F + + +++V WN ++  Y     +  + K+F +
Sbjct: 404 SSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQ 463

Query: 214 MP----DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR----NLVSWNAMINGYMKAGD 265
           M     + + F++  ++   S    V++  +I  ++       N+   + +I+ Y K G 
Sbjct: 464 MQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGK 523

Query: 266 VDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSA 325
           +D A ++F  ++ +D+++W +MIAGY  + +F EAL L + M    +  ++    SA+SA
Sbjct: 524 LDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISA 583

Query: 326 VAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHW 385
            AG+  LN+G+ +H+    +G+  D  +G  L+ +Y++CG +  A   F  I  K    W
Sbjct: 584 CAGIQALNQGQQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNISW 643

Query: 386 TAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN 445
            ++I G    G   +AL LF++M + G +  + TF   ++A ++   V  G++   M+I 
Sbjct: 644 NSLISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVANVKLGKQIHAMIIK 703

Query: 446 DYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGN--KDI 503
             G +   E    L+ +  + G +++A+     MP + N + W ++L+G   HG+  K +
Sbjct: 704 T-GHDSETEVSNVLITLYAKCGNIDDAERQFFEMPEK-NEISWNAMLTGYSQHGHGFKAL 761

Query: 504 GEYAANNLIKVAPDTIGCYVVLS 526
             +     + V P+ +    VLS
Sbjct: 762 SLFEDMKQLGVLPNHVTFVGVLS 784



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 122/475 (25%), Positives = 224/475 (47%), Gaps = 26/475 (5%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYV 98
           +LH   +K        +  RL+ LY+     +L  A ++FD +   P L  +N ++  +V
Sbjct: 89  KLHGKILKMGFCAEVVLCERLMDLYIA--FGDLDGAVTVFDEMPVRP-LSCWNKVLHRFV 145

Query: 99  FNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEG--KQIHGLVFKLGFGFD 156
             + +   L LF  +L   + PD  T   V++G    G +     ++IH      G+   
Sbjct: 146 AGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRGCGG-GDVPFHCVEKIHARTITHGYENS 204

Query: 157 KFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD 216
            FV + L+ +Y K G ++  ++VFD +  +D VSW  ++ G  + G  E A+ LF +M  
Sbjct: 205 LFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHT 264

Query: 217 RDLFSWTCLVDG-FSKCGKVEIAREIFYRMPNR----------NLVSW--NAMINGYMKA 263
             ++    +     S C KVE     FY++  +          +L ++  NA++  Y + 
Sbjct: 265 SGVYPTPYIFSSVLSACTKVE-----FYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRL 319

Query: 264 GDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSAL 323
           G+   A ++F+ M  RD +++NS+I+G    G   +ALEL + M +  + P+  T+ S L
Sbjct: 320 GNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLL 379

Query: 324 SAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVG 383
           SA + +  L  G+  HSY +K G   D +L   L+ +Y KC  I++A   F +   + V 
Sbjct: 380 SACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVV 439

Query: 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMM 443
            W  M+V  G+     ++  +F +M   G++P   T+  +L  CS    V+ G +    +
Sbjct: 440 LWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQV 499

Query: 444 INDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNH 498
           +   G +  +     L+D+  + G L+ A      +  + + V W ++++G   H
Sbjct: 500 LKT-GFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEK-DVVSWTAMIAGYAQH 552



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 110/431 (25%), Positives = 198/431 (45%), Gaps = 28/431 (6%)

Query: 77  IFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLG 136
            F + L+H + + Y      Y  ++     +     + +R +  ++ T   ++ G    G
Sbjct: 28  FFQKFLEHNTALSY-----AYSNDEGEANGINFLHLMEERGVRANSQTYLWLLDGCLSSG 82

Query: 137 AIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLID 196
              +G ++HG + K+GF  +  +   L+ +Y  FG++D    VFD M  + L  WN ++ 
Sbjct: 83  WFSDGWKLHGKILKMGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLH 142

Query: 197 GYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKCGKVEI---------AREI 241
            +V        + LF  M      PD   ++          CG  ++         AR I
Sbjct: 143 RFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGV-----LRGCGGGDVPFHCVEKIHARTI 197

Query: 242 FYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEAL 301
            +   N +L   N +I+ Y K G ++SA ++FD ++ RD ++W +M++G   +G   EA+
Sbjct: 198 THGYEN-SLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAV 256

Query: 302 ELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMY 361
            L   M    V P      S LSA   +     G  +H  ++K GF ++  +   L+ +Y
Sbjct: 257 LLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLY 316

Query: 362 SKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFI 421
           S+ G+   A  VF A+ ++    + ++I GL   G + +AL+LF KMC   +KP  +T  
Sbjct: 317 SRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVA 376

Query: 422 GVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPM 481
            +L+ACS  G +  G+++ +  I   G+   I   G L+D+  +   ++ A     S   
Sbjct: 377 SLLSACSSVGALLVGKQFHSYAIKA-GMSSDIILEGALLDLYVKCSDIKTAHEFFLSTET 435

Query: 482 RPNFVIWMSLL 492
             N V+W  +L
Sbjct: 436 E-NVVLWNVML 445


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 245/660 (37%), Positives = 361/660 (54%), Gaps = 73/660 (11%)

Query: 70  NLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVI 129
           N+  AR +FD I     +V +  ++ CY  N    ++L LFC +      P+NFT+   +
Sbjct: 154 NVDAARQVFDGIY-FKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMGYRPNNFTISAAL 212

Query: 130 KGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLV 189
           K    L A K GK +HG   K+ +                               D+DL 
Sbjct: 213 KSCNGLEAFKVGKSVHGCALKVCY-------------------------------DRDLY 241

Query: 190 SWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM---- 245
               L++ Y K GE+  A + F+EMP  DL  W+ ++  +++  K + A E+F RM    
Sbjct: 242 VGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSS 301

Query: 246 ---PNR---------------------------------NLVSWNAMINGYMKAGDVDSA 269
              PN                                  N+   NA+++ Y K G+++++
Sbjct: 302 VVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENS 361

Query: 270 CELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGL 329
            +LF     ++ + WN++I GY   G   +AL L   ML  D+ P + T  S L A A L
Sbjct: 362 VKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASL 421

Query: 330 AVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMI 389
             L  GR +HS  +K  +  D V+   LI MY+KCG I+ A   F  + K+    W A+I
Sbjct: 422 VALEPGRQIHSLTIKTMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALI 481

Query: 390 VGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGI 449
            G  +HG+  +AL+LF+ M +   KP  +TF+GVL+ACS+AGL++ GR +F  M+ DYGI
Sbjct: 482 CGYSIHGLGMEALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGI 541

Query: 450 EPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAAN 509
           EP IEHY C+V +L R+G  +EA   I  +P +P+ ++W +LL     H N D+G+  A 
Sbjct: 542 EPCIEHYTCMVWLLGRSGQFDEAVKLIGEIPFQPSVMVWRALLGACVIHKNLDLGKVCAQ 601

Query: 510 NLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFV 569
            ++++ P     +V+LSN+YA A +WD V+ VR+ MKK+  +K+PG S +E++GV+H F 
Sbjct: 602 RVLEMEPQDDATHVLLSNMYATAKRWDNVAYVRKNMKKKKVKKEPGLSWVENQGVVHYFT 661

Query: 570 VGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAF 629
           VGD SHP    I + L  +  K + AG+VPD + VLL +ED  EKE  L  HSERLA+AF
Sbjct: 662 VGDTSHPNIKLIFAMLEWLYKKTRDAGYVPDCSVVLLDVEDD-EKERLLWMHSERLALAF 720

Query: 630 GLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           GLI + S   IRI+KNLR+C DCH+V KL+S I  REI++RD +RFHHF+ G CSC D+W
Sbjct: 721 GLIQIPSGCSIRIIKNLRICVDCHAVIKLVSKIVQREIVIRDINRFHHFRQGVCSCGDYW 780



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 97/366 (26%), Positives = 164/366 (44%), Gaps = 51/366 (13%)

Query: 187 DLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKV----------- 235
           DL + N L++ YV  G +E A KLFDEMP  +  S+  L  GFS+  +            
Sbjct: 37  DLFAQNILLNTYVHFGFLEDASKLFDEMPLTNTVSFVTLAQGFSRSHQFQRARRLLLRLF 96

Query: 236 ----EIAREIF-----------------------YRMPNR-NLVSWNAMINGYMKAGDVD 267
               E+ + +F                       Y++ ++ +     A+I+ Y   G+VD
Sbjct: 97  REGYEVNQFVFTTLLKLLVSMDLADTCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVD 156

Query: 268 SACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVA 327
           +A ++FD +  +D+++W  M+A Y  N    ++L L   M I    PN+ T+ +AL +  
Sbjct: 157 AARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCN 216

Query: 328 GLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTA 387
           GL     G+ +H   +K  +  D  +G  L+++Y+K G I  A   F  + K  +  W+ 
Sbjct: 217 GLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSL 276

Query: 388 MIVGLGMHGMATQALDLFNKMCRMGMK----PTAITFIGVLNACSHAGLVNDGRRYFNMM 443
           MI        + +AL+LF   CRM       P   TF  VL AC+   L+N G +  + +
Sbjct: 277 MISRYAQSDKSKEALELF---CRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCV 333

Query: 444 INDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDI 503
           +   G++  +     L+D+  + G +E +           N V W +++ G    G+   
Sbjct: 334 LK-VGLDSNVFVSNALMDVYAKCGEIENSVKLFTG-STEKNEVAWNTIIVGYVQLGD--- 388

Query: 504 GEYAAN 509
           GE A N
Sbjct: 389 GEKALN 394


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 251/702 (35%), Positives = 387/702 (55%), Gaps = 70/702 (9%)

Query: 55  ISSRLLSLYVDPHINNLHYARSIFDRILQH--PSLVLYNLLIKCYVFNQRSHEALTLFCD 112
           I + L+++Y      +L  A  IFD I Q     ++ +N ++  +V +  +  AL LF  
Sbjct: 47  ICNALVAMY--SRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSK 104

Query: 113 L-LDRFLLPDN-----FTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSM 166
           + L     P N      ++  ++     L A+ + K++HG   + G   D FV ++L+  
Sbjct: 105 MTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDA 164

Query: 167 YAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR----DLFSW 222
           YAK G ++   +VF+ M+ KD+VSWN ++ GY + G  + A +LF  M       D+ +W
Sbjct: 165 YAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTW 224

Query: 223 TCLVDGFSKCGKVEIAREIFYRM------PN----------------------------- 247
           T ++ G+S+ G    A  +F +M      PN                             
Sbjct: 225 TAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLK 284

Query: 248 --------------RNLVSWNAMINGYMKAGDVDSACELFDD--MEIRDLITWNSMIAGY 291
                          +L+ +NA+I+ Y K     +A  +FDD  +E R+++TW  MI G+
Sbjct: 285 NCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGH 344

Query: 292 ELNGRFMEALELLETMLIGD--VLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVV 349
              G   +AL+L   M+     V PN  T+   L A A LA +  G+ +H+Y++++    
Sbjct: 345 AQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYD 404

Query: 350 DGV--LGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNK 407
                +   LI MYSKCG +++A  VF ++S+K    WT+M+ G GMHG  ++ALD+F+K
Sbjct: 405 SSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDK 464

Query: 408 MCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTG 467
           M + G  P  ITF+ VL ACSH G+V+ G  YF+ M  DYG+ P  EHY   +D+L R G
Sbjct: 465 MRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFG 524

Query: 468 YLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSN 527
            L++A  T++ MPM P  V+W++LLS  R H N ++ E+A N L+++  +  G Y ++SN
Sbjct: 525 RLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISN 584

Query: 528 IYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSE 587
           IYA AG+W  V+ +R +MKK G +K PG S ++ +     F VGD+SHP + +I++ L  
Sbjct: 585 IYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLES 644

Query: 588 MRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLR 647
           + +++KA G+VP+T   L  + D++EK   L  HSE+LA+A+GL+      PIRI KNLR
Sbjct: 645 LIDRIKAMGYVPETNFALHDV-DEEEKNNLLVEHSEKLALAYGLLTTFPGCPIRITKNLR 703

Query: 648 VCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           VC DCHS    +S I + EI+VRD SRFHHFKNGSCSC  +W
Sbjct: 704 VCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 745



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 136/474 (28%), Positives = 228/474 (48%), Gaps = 70/474 (14%)

Query: 121 DNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVF 180
           D+FTLP V+K    L + + G   HGL+   GF  + F+ ++LV+MY++ G ++    +F
Sbjct: 9   DHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIF 68

Query: 181 DAMDDK---DLVSWNCLIDGYVKKGEVEVAMKLFDEM----------------------- 214
           D +  +   D++SWN ++  +VK      A+ LF +M                       
Sbjct: 69  DEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILP 128

Query: 215 --------PDR--------------DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS 252
                   P                D+F    L+D ++KCG +E A ++F  M  +++VS
Sbjct: 129 ACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVS 188

Query: 253 WNAMINGYMKAGDVDSACELFDDMEIR----DLITWNSMIAGYELNGRFMEALELLETML 308
           WNAM+ GY ++G+  +A ELF +M       D++TW ++IAGY   G   EAL +   M+
Sbjct: 189 WNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMI 248

Query: 309 IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVV----------DGVLGTLLI 358
               LPN  T++S LSA A L   ++G  +H+Y +KN  +           D ++   LI
Sbjct: 249 FSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALI 308

Query: 359 QMYSKCGSIESALTVFRAI--SKKKVGHWTAMIVGLGMHGMATQALDLFNKMCR--MGMK 414
            MYSKC S ++A ++F  I   ++ V  WT MI G   +G +  AL LF +M     G+ 
Sbjct: 309 DMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVA 368

Query: 415 PTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYG-CLVDILCRTGYLEEAK 473
           P A T   +L AC+H   +  G++    ++  +  + +      CL+++  + G ++ A+
Sbjct: 369 PNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTAR 428

Query: 474 STIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVA--PDTIGCYVVL 525
              +SM  + + + W S+++G   HG         + + K    PD I   VVL
Sbjct: 429 HVFDSMSQK-SAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVL 481


>gi|326506208|dbj|BAJ86422.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 582

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 216/467 (46%), Positives = 297/467 (63%), Gaps = 2/467 (0%)

Query: 225 LVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITW 284
           L+  +S CG +  AR++F   P  ++++WN ++ GY +  D  +  E F  M  RD ++W
Sbjct: 116 LIHAYSVCGMLFDARKVFDHGPEVDMIAWNCLLRGYAQGRDTGALREFFAQMPARDSVSW 175

Query: 285 NSMIAGYELNGRFMEALELLETMLIG-DVLPNDATLVSALSAVAGLAVLNKGRWMHSYIV 343
           N++IA    NG   EA+ +   ML   +  P+  TLVS +SA+A L  L +G W H+Y+ 
Sbjct: 176 NTVIAWCVANGEHEEAVAVFREMLASNECQPDRVTLVSVISAIAYLGALAQGLWAHAYVC 235

Query: 344 KNGFVVDGVLGTLLIQMYSKCGSIESALTVFR-AISKKKVGHWTAMIVGLGMHGMATQAL 402
           +    VD  L + LI MYSKCG IE A+ VF  + + + V  W AM+ G    G + +AL
Sbjct: 236 RKEIEVDEKLSSALINMYSKCGFIEGAVYVFENSCALRSVDTWNAMLAGFTASGCSERAL 295

Query: 403 DLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDI 462
           +LF +M   G  P  ITF  +LNACSH G V +G  YF  M N   IEP I HYGC+VD+
Sbjct: 296 ELFTRMESSGFVPNKITFNTLLNACSHGGFVEEGIGYFERMTNSSSIEPDIAHYGCMVDL 355

Query: 463 LCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCY 522
            CR G  E+A+  I+ MPM P+  +W +L+   R + N ++G+ A + LI+ AP+    Y
Sbjct: 356 FCRAGLFEKAEEMIQMMPMEPDAAVWKALVGACRTYSNFELGKKAGHRLIEAAPNDHAGY 415

Query: 523 VVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIH 582
           V+LSNIYA  G W  V +VR++M   G +K PGSSSIE  GV+HEF+ GDKSH +  +++
Sbjct: 416 VLLSNIYALDGNWKGVYKVRKLMLNCGVQKVPGSSSIELDGVIHEFISGDKSHSRKRDVY 475

Query: 583 SKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRI 642
             LSE+  +LK AG+ PDT+QVLL I+D+  KE+ L  HSERLA+AFGLI+    +PIRI
Sbjct: 476 EMLSEICQQLKVAGYAPDTSQVLLDIDDEDVKESSLALHSERLALAFGLISTAPGTPIRI 535

Query: 643 VKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           VKNLRVC DCH+  KLLS IY R I+VRD +RFH F+ GSCSC D+W
Sbjct: 536 VKNLRVCGDCHNAIKLLSKIYGRCIMVRDANRFHRFREGSCSCGDYW 582



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 93/365 (25%), Positives = 147/365 (40%), Gaps = 74/365 (20%)

Query: 104 HEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSL 163
           H AL LF  LL     PD       +   AR  A     Q+HG   K G    + V + L
Sbjct: 57  HLALRLFDHLLRSGADPDPIAYALALARCARERAYPAAAQLHGHAAKRGAASHRRVRNGL 116

Query: 164 VSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWT 223
           +  Y+  G +   R+VFD   + D+++WNCL+ GY +  +     + F +MP RD  SW 
Sbjct: 117 IHAYSVCGMLFDARKVFDHGPEVDMIAWNCLLRGYAQGRDTGALREFFAQMPARDSVSWN 176

Query: 224 CLVDGFSKCGKVEIAREIFYRM-------PNR-NLVS---------------W------- 253
            ++      G+ E A  +F  M       P+R  LVS               W       
Sbjct: 177 TVIAWCVANGEHEEAVAVFREMLASNECQPDRVTLVSVISAIAYLGALAQGLWAHAYVCR 236

Query: 254 ----------NAMINGYMKAGDVDSACELFDD-MEIRDLITWNSMIAGYELNGRFMEALE 302
                     +A+IN Y K G ++ A  +F++   +R + TWN+M+AG+  +G    ALE
Sbjct: 237 KEIEVDEKLSSALINMYSKCGFIEGAVYVFENSCALRSVDTWNAMLAGFTASGCSERALE 296

Query: 303 LLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYS 362
           L   M     +PN  T  + L+A +                  GFV +G+      +  +
Sbjct: 297 LFTRMESSGFVPNKITFNTLLNACS----------------HGGFVEEGI---GYFERMT 337

Query: 363 KCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIG 422
              SIE             + H+  M+      G+  +A ++      M M+P A  +  
Sbjct: 338 NSSSIE-----------PDIAHYGCMVDLFCRAGLFEKAEEMIQM---MPMEPDAAVWKA 383

Query: 423 VLNAC 427
           ++ AC
Sbjct: 384 LVGAC 388


>gi|115473893|ref|NP_001060545.1| Os07g0662700 [Oryza sativa Japonica Group]
 gi|24414187|dbj|BAC22429.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113612081|dbj|BAF22459.1| Os07g0662700 [Oryza sativa Japonica Group]
 gi|125559498|gb|EAZ05034.1| hypothetical protein OsI_27217 [Oryza sativa Indica Group]
 gi|125601406|gb|EAZ40982.1| hypothetical protein OsJ_25464 [Oryza sativa Japonica Group]
          Length = 544

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 224/501 (44%), Positives = 318/501 (63%), Gaps = 7/501 (1%)

Query: 192 NCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLV 251
           N LI  Y   G V+ A ++FD M  RD  S+  ++   +  G V  AR +F R+P+   V
Sbjct: 48  NALIQAYAASGLVDDARRVFDGMSHRDTVSFNSMIHAHAMSGDVVSARRLFERVPSPTPV 107

Query: 252 SWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGD 311
           +W +M+ G  +AGDV +A  LF++M +RDL++WN+M++G   N R +EAL L   M+   
Sbjct: 108 TWTSMVAGLCRAGDVAAARRLFEEMPVRDLVSWNAMMSGLAGNRRPVEALCLFRRMMAEG 167

Query: 312 VLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVV--DGVLGTLLIQMYSKCGSIES 369
             PN  T++SAL+A AG   L  G+W+H+++ +       D  LGT L+ MY+KCG++E 
Sbjct: 168 FAPNRGTVLSALAACAGAGALETGKWIHAFVERKRLFRWWDEFLGTALLDMYAKCGAVEL 227

Query: 370 ALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKM-CRMGMKPTAITFIGVLNACS 428
           AL VF  +  +    W AMI GL M+G + +ALD+F KM     + P  +TF+GVL ACS
Sbjct: 228 ALDVFTKLRSRNTCTWNAMINGLAMNGYSAKALDMFRKMELDRTVVPDEVTFVGVLLACS 287

Query: 429 HAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIW 488
           H G V+ GR +F+M+   YGI   +EHY C+VD+L R+G+L+EA   I  MPM+P+ V+W
Sbjct: 288 HGGFVDVGREHFHMIEKKYGIRLILEHYACMVDLLARSGHLQEAHKIIAGMPMKPDAVVW 347

Query: 489 MSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548
            +LL G R H +  + E A + +        G +V+LSN+YAA G+W  V +VR  M+ +
Sbjct: 348 RALLGGCRLHKDVKMAETAISEMEATCS---GDHVLLSNLYAAVGRWSGVEDVRRTMRSK 404

Query: 549 GFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCI 608
           G  K PG SSIE    +HEFV GDKSHP  ++IH+KL+E+  +++  G+V +T +V   +
Sbjct: 405 GIEKIPGCSSIEINDSIHEFVSGDKSHPSYNDIHAKLAEISARMQQQGYVTETAEVFYDV 464

Query: 609 EDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREII 668
           E++ EKE  L +HSE+LAIAFGLI       IRIVKNLR C DCH   KL+S IY+ EI+
Sbjct: 465 EEE-EKEQALGHHSEKLAIAFGLIGGPPNVAIRIVKNLRFCADCHKFAKLVSQIYHWEIV 523

Query: 669 VRDNSRFHHFKNGSCSCKDFW 689
           VRD +RFHHF  G+CSC DFW
Sbjct: 524 VRDRARFHHFTEGACSCNDFW 544



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 143/345 (41%), Gaps = 80/345 (23%)

Query: 144 IHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVS------------- 190
           +H L+ KLG      V ++L+  YA  G +D  RRVFD M  +D VS             
Sbjct: 31  LHALLVKLGLQPYARVHNALIQAYAASGLVDDARRVFDGMSHRDTVSFNSMIHAHAMSGD 90

Query: 191 ------------------WNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKC 232
                             W  ++ G  + G+V  A +LF+EMP RDL SW  ++ G +  
Sbjct: 91  VVSARRLFERVPSPTPVTWTSMVAGLCRAGDVAAARRLFEEMPVRDLVSWNAMMSGLAGN 150

Query: 233 GKVEIAREIFYRM------PNRNLV----------------SW----------------- 253
            +   A  +F RM      PNR  V                 W                 
Sbjct: 151 RRPVEALCLFRRMMAEGFAPNRGTVLSALAACAGAGALETGKWIHAFVERKRLFRWWDEF 210

Query: 254 --NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETM-LIG 310
              A+++ Y K G V+ A ++F  +  R+  TWN+MI G  +NG   +AL++   M L  
Sbjct: 211 LGTALLDMYAKCGAVELALDVFTKLRSRNTCTWNAMINGLAMNGYSAKALDMFRKMELDR 270

Query: 311 DVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLG--TLLIQMYSKCGSIE 368
            V+P++ T V  L A +    ++ GR  H ++++  + +  +L     ++ + ++ G ++
Sbjct: 271 TVVPDEVTFVGVLLACSHGGFVDVGR-EHFHMIEKKYGIRLILEHYACMVDLLARSGHLQ 329

Query: 369 SALTVFRAIS-KKKVGHWTAMIVGLGMH---GMATQALDLFNKMC 409
            A  +   +  K     W A++ G  +H    MA  A+      C
Sbjct: 330 EAHKIIAGMPMKPDAVVWRALLGGCRLHKDVKMAETAISEMEATC 374



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 148/323 (45%), Gaps = 33/323 (10%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           AR +F+ +     LV +N ++     N+R  EAL LF  ++     P+  T+   +   A
Sbjct: 125 ARRLFEEMPVR-DLVSWNAMMSGLAGNRRPVEALCLFRRMMAEGFAPNRGTVLSALAACA 183

Query: 134 RLGAIKEGKQIHGLV--FKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSW 191
             GA++ GK IH  V   +L   +D+F+ ++L+ MYAK G ++L   VF  +  ++  +W
Sbjct: 184 GAGALETGKWIHAFVERKRLFRWWDEFLGTALLDMYAKCGAVELALDVFTKLRSRNTCTW 243

Query: 192 NCLIDGYVKKGEVEVAMKLFDEMP-DR----DLFSWTCLVDGFSKCGKVEIAREIFYRMP 246
           N +I+G    G    A+ +F +M  DR    D  ++  ++   S  G V++ RE F+ + 
Sbjct: 244 NAMINGLAMNGYSAKALDMFRKMELDRTVVPDEVTFVGVLLACSHGGFVDVGREHFHMIE 303

Query: 247 NRN-----LVSWNAMINGYMKAGDVDSACELFDDMEIR-DLITWNSMIAGYELNGRFMEA 300
            +      L  +  M++   ++G +  A ++   M ++ D + W +++ G  L+    + 
Sbjct: 304 KKYGIRLILEHYACMVDLLARSGHLQEAHKIIAGMPMKPDAVVWRALLGGCRLH----KD 359

Query: 301 LELLETML--IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLI 358
           +++ ET +  +      D  L+S L A         GRW     V+      G      I
Sbjct: 360 VKMAETAISEMEATCSGDHVLLSNLYAAV-------GRWSGVEDVRRTMRSKG------I 406

Query: 359 QMYSKCGSIESALTVFRAISKKK 381
           +    C SIE   ++   +S  K
Sbjct: 407 EKIPGCSSIEINDSIHEFVSGDK 429



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 4/106 (3%)

Query: 338 MHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGM 397
           +H+ +VK G      +   LIQ Y+  G ++ A  VF  +S +    + +MI    M G 
Sbjct: 31  LHALLVKLGLQPYARVHNALIQAYAASGLVDDARRVFDGMSHRDTVSFNSMIHAHAMSGD 90

Query: 398 ATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMM 443
              A  LF ++      PT +T+  ++     AG V   RR F  M
Sbjct: 91  VVSARRLFERV----PSPTPVTWTSMVAGLCRAGDVAAARRLFEEM 132


>gi|413938666|gb|AFW73217.1| hypothetical protein ZEAMMB73_724608 [Zea mays]
          Length = 610

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 228/536 (42%), Positives = 312/536 (58%), Gaps = 3/536 (0%)

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP 215
           D    ++L+S +   G+ID  RRVF  M  KD+ SWN ++ G  K G  E A  +F  MP
Sbjct: 76  DTVSYNTLLSCHFACGDIDGARRVFSTMPVKDVTSWNTMVSGLSKNGASEEAAAMFRIMP 135

Query: 216 DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR-NLVSWNAMINGYMKAGDVDSACELFD 274
            R+  SW  +V   +  G +  A ++F   P + + + W AM++GYM  G+V  A E F 
Sbjct: 136 VRNAVSWNAMVAALACSGDMGAAEDLFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEFFG 195

Query: 275 DMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL-PNDATLVSALSAVAGLAVLN 333
            M +R+L++WN+++AGY  N R  +AL + +TM+   ++ PN +TL S L   + L+ L 
Sbjct: 196 AMPVRNLVSWNAVVAGYVKNSRADDALRVFKTMVEDSIVQPNASTLSSVLLGCSNLSALG 255

Query: 334 KGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLG 393
            GR +H + +K     +  +GT L+ MY KCG +  A  VF  +S K +  W AMI G  
Sbjct: 256 FGRQVHQWCMKLPLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMSTKDIVAWNAMISGYA 315

Query: 394 MHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTI 453
            HG   QA+ LF KM   G+ P  IT + VL AC H GL + G + F  M   Y IEP I
Sbjct: 316 QHGGGMQAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYKIEPQI 375

Query: 454 EHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIK 513
           +HY C+VD+LCR G LE A + I SMP  P+   + +LL+  R + N +  E+AA  LI+
Sbjct: 376 DHYSCMVDLLCRAGLLERAVNMIHSMPFEPHPSAYGTLLTACRVYKNLEFAEFAARKLIE 435

Query: 514 VAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDK 573
             P   G YV L+NIYA A +W  VS VR  MK     K PG S +E +GV HEF   D+
Sbjct: 436 QDPQNAGAYVQLANIYAVANKWADVSRVRRWMKDNAVVKTPGYSWMEIKGVRHEFRSNDR 495

Query: 574 SHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLIN 633
            HPQ   IH KL  ++  +KA G+VPD    L  +ED   K   L  HSE+LAIAFGLI+
Sbjct: 496 LHPQLGLIHDKLDRLQMLMKAMGYVPDLDFALHDVEDSL-KSQMLMRHSEKLAIAFGLIS 554

Query: 634 VKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
                 +RI KNLR+C DCH+  KL+S I +REII+RD +RFHHF+ G CSC D+W
Sbjct: 555 TSPGMTLRIFKNLRICGDCHNAAKLISKIEDREIILRDTTRFHHFRGGHCSCGDYW 610



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 139/293 (47%), Gaps = 50/293 (17%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           AR +FD I  HP  V YN L+ C+        A  +F  +     + D  +   ++ G +
Sbjct: 65  ARRLFDSI-PHPDTVSYNTLLSCHFACGDIDGARRVFSTM----PVKDVTSWNTMVSGLS 119

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVF-DAMDDKDLVSWN 192
           + GA +E   +    F++    +    +++V+  A  G++     +F +A +  D + W 
Sbjct: 120 KNGASEEAAAM----FRIMPVRNAVSWNAMVAALACSGDMGAAEDLFRNAPEKTDAILWT 175

Query: 193 CLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM------- 245
            ++ GY+  G V+ AM+ F  MP R+L SW  +V G+ K  + + A  +F  M       
Sbjct: 176 AMVSGYMDTGNVQKAMEFFGAMPVRNLVSWNAVVAGYVKNSRADDALRVFKTMVEDSIVQ 235

Query: 246 PN---------------------------------RNLVSWNAMINGYMKAGDVDSACEL 272
           PN                                 RN+    ++++ Y K GD++ AC++
Sbjct: 236 PNASTLSSVLLGCSNLSALGFGRQVHQWCMKLPLSRNVTVGTSLLSMYCKCGDLNDACKV 295

Query: 273 FDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSA 325
           FD+M  +D++ WN+MI+GY  +G  M+A++L E M    V+P+  TL++ L+A
Sbjct: 296 FDEMSTKDIVAWNAMISGYAQHGGGMQAIKLFEKMKDEGVVPDWITLLAVLTA 348



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/339 (23%), Positives = 158/339 (46%), Gaps = 17/339 (5%)

Query: 195 IDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCG---KVEIAREIFYRMPNRNLV 251
           +   V++G++  A + F     +   ++ CL+ G++K     ++  AR +F  +P+ + V
Sbjct: 19  VAAAVRRGDLAGAEEAFASTQLKTTTTYNCLLAGYAKASGLIRLADARRLFDSIPHPDTV 78

Query: 252 SWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGD 311
           S+N +++ +   GD+D A  +F  M ++D+ +WN+M++G   NG   EA  +   M + +
Sbjct: 79  SYNTLLSCHFACGDIDGARRVFSTMPVKDVTSWNTMVSGLSKNGASEEAAAMFRIMPVRN 138

Query: 312 VLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGF-VVDGVLGTLLIQMYSKCGSIESA 370
            +  +A +V+AL+    +            + +N     D +L T ++  Y   G+++ A
Sbjct: 139 AVSWNA-MVAALACSGDMGAAED-------LFRNAPEKTDAILWTAMVSGYMDTGNVQKA 190

Query: 371 LTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGM-KPTAITFIGVLNACSH 429
           +  F A+  + +  W A++ G   +  A  AL +F  M    + +P A T   VL  CS+
Sbjct: 191 MEFFGAMPVRNLVSWNAVVAGYVKNSRADDALRVFKTMVEDSIVQPNASTLSSVLLGCSN 250

Query: 430 AGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWM 489
              +  GR+     +    +   +     L+ + C+ G L +A    + M  + + V W 
Sbjct: 251 LSALGFGRQVHQWCMK-LPLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMSTK-DIVAWN 308

Query: 490 SLLSGARNHGN--KDIGEYAANNLIKVAPDTIGCYVVLS 526
           +++SG   HG   + I  +       V PD I    VL+
Sbjct: 309 AMISGYAQHGGGMQAIKLFEKMKDEGVVPDWITLLAVLT 347



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 98/178 (55%), Gaps = 5/178 (2%)

Query: 57  SRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL-D 115
           + ++S Y+D    N+  A   F  +    +LV +N ++  YV N R+ +AL +F  ++ D
Sbjct: 175 TAMVSGYMD--TGNVQKAMEFFGAMPVR-NLVSWNAVVAGYVKNSRADDALRVFKTMVED 231

Query: 116 RFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDL 175
             + P+  TL  V+ G + L A+  G+Q+H    KL    +  V +SL+SMY K G+++ 
Sbjct: 232 SIVQPNASTLSSVLLGCSNLSALGFGRQVHQWCMKLPLSRNVTVGTSLLSMYCKCGDLND 291

Query: 176 GRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLF-SWTCLVDGFSKC 232
             +VFD M  KD+V+WN +I GY + G    A+KLF++M D  +   W  L+   + C
Sbjct: 292 ACKVFDEMSTKDIVAWNAMISGYAQHGGGMQAIKLFEKMKDEGVVPDWITLLAVLTAC 349


>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Glycine max]
          Length = 693

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 227/610 (37%), Positives = 343/610 (56%), Gaps = 41/610 (6%)

Query: 120 PDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRV 179
           P       +I    R  A++ G+++H       F    F+ + L+ MYAK G +   + +
Sbjct: 85  PSARVYSTLIAACVRHRALELGRRVHAHTKASNFVPGVFISNRLLDMYAKCGSLVDAQML 144

Query: 180 FDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAR 239
           FD M  +DL SWN +I GY K G +E A KLFDEMP RD FSW   + G+    +   A 
Sbjct: 145 FDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQRDNFSWNAAISGYVTHNQPREAL 204

Query: 240 EIFYRMP----------------------------------------NRNLVSWNAMING 259
           E+F  M                                         N + V W+A+++ 
Sbjct: 205 ELFRVMQRHERSSSNKFTLSSALAASAAIPCLRLGKEIHGYLIRTELNLDEVVWSALLDL 264

Query: 260 YMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATL 319
           Y K G +D A  +FD M+ RD+++W +MI     +GR  E   L   ++   V PN+ T 
Sbjct: 265 YGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFEDGRREEGFLLFRDLMQSGVRPNEYTF 324

Query: 320 VSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK 379
              L+A A  A  + G+ +H Y++  G+       + L+ MYSKCG+   A  VF  + +
Sbjct: 325 AGVLNACADHAAEHLGKEVHGYMMHAGYDPGSFAISALVHMYSKCGNTRVARRVFNEMHQ 384

Query: 380 KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRY 439
             +  WT++IVG   +G   +AL  F  + + G KP  +T++GVL+AC+HAGLV+ G  Y
Sbjct: 385 PDLVSWTSLIVGYAQNGQPDEALHFFELLLQSGTKPDQVTYVGVLSACTHAGLVDKGLEY 444

Query: 440 FNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
           F+ +   +G+  T +HY C++D+L R+G  +EA++ I++MP++P+  +W SLL G R HG
Sbjct: 445 FHSIKEKHGLMHTADHYACVIDLLARSGRFKEAENIIDNMPVKPDKFLWASLLGGCRIHG 504

Query: 500 NKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSI 559
           N ++ + AA  L ++ P+    Y+ L+NIYA AG W +V+ VR+ M   G  K PG S I
Sbjct: 505 NLELAKRAAKALYEIEPENPATYITLANIYANAGLWSEVANVRKDMDNMGIVKKPGKSWI 564

Query: 560 EHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELE 619
           E +  +H F+VGD SHP+T +IH  L E+  K+K  G+VPDT  VL  +E++ +KE  L 
Sbjct: 565 EIKRQVHVFLVGDTSHPKTSDIHEFLGELSKKIKEEGYVPDTNFVLHDVEEE-QKEQNLV 623

Query: 620 NHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFK 679
            HSE+LA+ FG+I+    +PI++ KNLR C DCH+  K +S I  R+I VRD++RFH F+
Sbjct: 624 YHSEKLAVVFGIISTPPGTPIKVFKNLRTCVDCHTAIKYISKIVQRKITVRDSNRFHCFE 683

Query: 680 NGSCSCKDFW 689
           +GSCSCKD+W
Sbjct: 684 DGSCSCKDYW 693



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 118/490 (24%), Positives = 194/490 (39%), Gaps = 108/490 (22%)

Query: 18  HLPS-RLHWNILKFSSTHKETQ---QLHALSVKTNLIYHSGISSRLLSLY------VDPH 67
           H PS R++  ++     H+  +   ++HA +  +N +    IS+RLL +Y      VD  
Sbjct: 83  HRPSARVYSTLIAACVRHRALELGRRVHAHTKASNFVPGVFISNRLLDMYAKCGSLVDAQ 142

Query: 68  -----------------------INNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSH 104
                                  +  L  AR +FD + Q  +   +N  I  YV + +  
Sbjct: 143 MLFDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQRDNFS-WNAAISGYVTHNQPR 201

Query: 105 EALTLFCDLLDRFLLPDN-FTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSL 163
           EAL LF  +        N FTL   +  +A +  ++ GK+IHG + +     D+ V S+L
Sbjct: 202 EALELFRVMQRHERSSSNKFTLSSALAASAAIPCLRLGKEIHGYLIRTELNLDEVVWSAL 261

Query: 164 VSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------P-- 215
           + +Y K G +D  R +FD M D+D+VSW  +I    + G  E    LF ++      P  
Sbjct: 262 LDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFEDGRREEGFLLFRDLMQSGVRPNE 321

Query: 216 -------------------------------DRDLFSWTCLVDGFSKCGKVEIAREIFYR 244
                                          D   F+ + LV  +SKCG   +AR +F  
Sbjct: 322 YTFAGVLNACADHAAEHLGKEVHGYMMHAGYDPGSFAISALVHMYSKCGNTRVARRVFNE 381

Query: 245 MPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELL 304
           M   +LVSW ++I GY + G  D                               EAL   
Sbjct: 382 MHQPDLVSWTSLIVGYAQNGQPD-------------------------------EALHFF 410

Query: 305 ETMLIGDVLPNDATLVSALSAVAGLAVLNKG-RWMHSYIVKNGFVVDGVLGTLLIQMYSK 363
           E +L     P+  T V  LSA     +++KG  + HS   K+G +        +I + ++
Sbjct: 411 ELLLQSGTKPDQVTYVGVLSACTHAGLVDKGLEYFHSIKEKHGLMHTADHYACVIDLLAR 470

Query: 364 CGSIESALTVFRAISKKKVGH-WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIG 422
            G  + A  +   +  K     W +++ G  +HG    A      +  +  +  A T+I 
Sbjct: 471 SGRFKEAENIIDNMPVKPDKFLWASLLGGCRIHGNLELAKRAAKALYEIEPENPA-TYIT 529

Query: 423 VLNACSHAGL 432
           + N  ++AGL
Sbjct: 530 LANIYANAGL 539



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 146/311 (46%), Gaps = 21/311 (6%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +++H   ++T L     + S LL LY      +L  AR IFD++     +    ++ +C+
Sbjct: 240 KEIHGYLIRTELNLDEVVWSALLDLY--GKCGSLDEARGIFDQMKDRDVVSWTTMIHRCF 297

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
             + R  E   LF DL+   + P+ +T   V+   A   A   GK++HG +   G+    
Sbjct: 298 E-DGRREEGFLLFRDLMQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHAGYDPGS 356

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM--- 214
           F +S+LV MY+K G   + RRVF+ M   DLVSW  LI GY + G+ + A+  F+ +   
Sbjct: 357 FAISALVHMYSKCGNTRVARRVFNEMHQPDLVSWTSLIVGYAQNGQPDEALHFFELLLQS 416

Query: 215 -PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNA-----MINGYMKAGDVDS 268
               D  ++  ++   +  G V+   E F+ +  ++ +   A     +I+   ++G    
Sbjct: 417 GTKPDQVTYVGVLSACTHAGLVDKGLEYFHSIKEKHGLMHTADHYACVIDLLARSGRFKE 476

Query: 269 ACELFDDMEIR-DLITWNSMIAGYELNGRFMEALELLETMLIGDVLP-NDATLVSALSAV 326
           A  + D+M ++ D   W S++ G  ++G    A    + +   ++ P N AT ++  +  
Sbjct: 477 AENIIDNMPVKPDKFLWASLLGGCRIHGNLELAKRAAKALY--EIEPENPATYITLANIY 534

Query: 327 AGLAVLNKGRW 337
           A     N G W
Sbjct: 535 A-----NAGLW 540



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 3/113 (2%)

Query: 296 RFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGT 355
           R  EA+ELL      D  P+     + ++A      L  GR +H++   + FV    +  
Sbjct: 70  RVKEAVELLHRT---DHRPSARVYSTLIAACVRHRALELGRRVHAHTKASNFVPGVFISN 126

Query: 356 LLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKM 408
            L+ MY+KCGS+  A  +F  +  + +  W  MIVG    G   QA  LF++M
Sbjct: 127 RLLDMYAKCGSLVDAQMLFDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEM 179


>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
 gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
          Length = 632

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 249/679 (36%), Positives = 374/679 (55%), Gaps = 78/679 (11%)

Query: 22  RLHWNILKFSSTHKETQ--QLHALSVKTNLIYHSGISSRLLSLYVDPHINN-LHYARSIF 78
           ++H     F      +Q  Q H+  ++  L  H+ +   L++       ++ L YA  +F
Sbjct: 21  QMHVEPFHFEKCQSMSQLRQYHSQIIRLGLSSHNHLIPPLINFCARASTSDALTYALKLF 80

Query: 79  DRILQHPSLVLYNLLIKCYVFNQ--RSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLG 136
           D I Q P   LYN +IK ++ +Q   ++  L L+  +L   +LP+NFT P ++    +  
Sbjct: 81  DSIPQ-PDAFLYNTIIKGFLHSQLLPTNSILLLYSHMLQNSVLPNNFTFPSLLIACRK-- 137

Query: 137 AIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLID 196
            I+ G QIH  +F                   KFG        F A      V  N LI 
Sbjct: 138 -IQHGMQIHAHLF-------------------KFG--------FGAHS----VCLNSLIH 165

Query: 197 GYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAM 256
            YV           F  +                     E AR +F+ +P+ + VSW ++
Sbjct: 166 MYVT----------FQAL---------------------EEARRVFHTIPHPDSVSWTSL 194

Query: 257 INGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLI--GDVLP 314
           I+GY K G +D A  +F  M  ++  +WN+M+A Y    RF EA  L + M     +VL 
Sbjct: 195 ISGYSKWGLIDEAFTIFQLMPQKNSASWNAMMAAYVQTNRFHEAFALFDRMKAENNNVL- 253

Query: 315 NDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVF 374
           +     + LSA  GL  L++G+W+H YI +NG  +D  L T ++ MY KCG +E AL VF
Sbjct: 254 DKFVATTMLSACTGLGALDQGKWIHEYIKRNGIELDSKLTTAIVDMYCKCGCLEKALQVF 313

Query: 375 RAISK--KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGL 432
            ++    + +  W  MI GL MHG    A+ LF +M R  + P  ITF+ +L AC+H+GL
Sbjct: 314 HSLPLPCRWISSWNCMIGGLAMHGNGEAAIQLFKEMERQRVAPDDITFLNLLTACAHSGL 373

Query: 433 VNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLL 492
           V +GR YF+ MI  YGIEP +EH+GC+VD+L R G + EA+  I+ MP+ P+  +  +LL
Sbjct: 374 VEEGRNYFSYMIRVYGIEPRMEHFGCMVDLLGRAGMVPEARKLIDEMPVSPDVTVLGTLL 433

Query: 493 SGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRK 552
              + H N ++GE     +I++ P+  G YV+L+N+YA AG+W+  ++VR++M  RG +K
Sbjct: 434 GACKKHRNIELGEEIGRRVIELEPNNSGRYVLLANLYANAGKWEDAAKVRKLMDDRGVKK 493

Query: 553 DPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLC--IED 610
            PG S IE +G +HEF+ G+++HPQ  E+H+K+ EM   LK+ G+V DT  VL     ++
Sbjct: 494 APGFSMIELQGTVHEFIAGERNHPQAKELHAKVYEMLEHLKSVGYVADTNGVLHGHDFDE 553

Query: 611 QKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVR 670
           +++ E  L  HSE+LAIAFGL   K    +RI+KNLR+C DCH   KL+S +++REIIVR
Sbjct: 554 EEDGENPLYYHSEKLAIAFGLSRTKPGETLRILKNLRICEDCHHACKLISTVFDREIIVR 613

Query: 671 DNSRFHHFKNGSCSCKDFW 689
           D +RFH FK G CSC+D+W
Sbjct: 614 DRTRFHRFKMGQCSCQDYW 632


>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
          Length = 941

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 227/623 (36%), Positives = 358/623 (57%), Gaps = 8/623 (1%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           A  +F +I +    + +N ++ CYV N    EA+  F ++L     PD+  +  +     
Sbjct: 320 ALRVFGQIAE-KDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALG 378

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
            L  +  G++ H    K     D  V ++L+ MY K G I+   +VF++M  +D +SW  
Sbjct: 379 HLSRLNNGREFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHISWTT 438

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGF--SKCG--KVEIAREIF-YRMPNR 248
           ++  + +      A+++  E+    +   + ++     + CG   + + +++  Y + N 
Sbjct: 439 ILACFAQSSRHSEALEMILELQKEGIMVDSMMIGSILETCCGLKSISLLKQVHCYAIRNG 498

Query: 249 --NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLET 306
             +L+  N +I+ Y + G+ D +  LF  +E +D+++W SMI     NGR   A+ L   
Sbjct: 499 LLDLILENRLIDIYGECGEFDHSLNLFQRVEKKDIVSWTSMINCCTNNGRLNGAVFLFTE 558

Query: 307 MLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGS 366
           M   ++ P+   LVS L A+AGL+ L KG+ +H ++++  F ++G + + L+ MYS CGS
Sbjct: 559 MQKANIQPDSVALVSILVAIAGLSSLTKGKQVHGFLIRRNFPIEGPVVSSLVDMYSGCGS 618

Query: 367 IESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNA 426
           +  A+ VF     K V  WTAMI   GMHG   QA+DLF +M + G+ P  ++F+ +L A
Sbjct: 619 MNYAIRVFERAKCKDVVLWTAMINATGMHGHGKQAIDLFKRMLQTGLTPDHVSFLALLYA 678

Query: 427 CSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFV 486
           CSH+ LV +G+ Y ++M++ Y ++P  EHY C+VDIL R+G  EEA   I++MPM P   
Sbjct: 679 CSHSKLVEEGKHYLDIMVSKYRLKPWQEHYACVVDILGRSGQTEEAYEFIKTMPMDPKSA 738

Query: 487 IWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMK 546
           +W +LL   R H N  +   AAN L+++ PD  G Y+++SN++A  G+W+   E R  M 
Sbjct: 739 VWCALLGACRVHRNYGLAVVAANKLLELEPDNPGNYILVSNVFAEMGKWNNAKETRTRMA 798

Query: 547 KRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLL 606
           +RG RK+P  S IE    +H F  GD  H  ++ IH KLSE+   L+  G   + T+ +L
Sbjct: 799 ERGLRKNPACSWIEIGNNIHTFTSGDYCHRDSEAIHLKLSEITEMLRREGGYVEDTRFVL 858

Query: 607 CIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNRE 666
               ++EK   L  HSER+AIAFGLI+ +   PIRI KNLRVC DCH  TKL+S ++ R+
Sbjct: 859 HDTSEEEKIDMLHKHSERIAIAFGLISTRPGMPIRIAKNLRVCGDCHEFTKLVSKLFERD 918

Query: 667 IIVRDNSRFHHFKNGSCSCKDFW 689
           I+VRD +RFHHF  GSCSC+DFW
Sbjct: 919 IVVRDANRFHHFSGGSCSCEDFW 941



 Score =  172 bits (436), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 135/552 (24%), Positives = 261/552 (47%), Gaps = 28/552 (5%)

Query: 20  PSRLHW----NILKFSSTHKETQQLHALSVKTNLIYHSG---ISSRLLSLYVDPHINNLH 72
           P+R H+    +++       E +Q+HA +V T  +       ++++L+ +Y       + 
Sbjct: 55  PAREHYGWVLDLVAARRAAAEGRQVHAHAVTTGSLNEDDDGFLATKLVFMY--GRCGRVD 112

Query: 73  YARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFL---LPDNFTLPCVI 129
            AR +F+ +    ++  +N L+  Y+ +  + EA+ ++  +         PD  TL  V+
Sbjct: 113 DARRLFNGMPAR-TVFSWNALVGAYLSSGSAGEAMRVYGAMRASAAPGSAPDGCTLASVL 171

Query: 130 KGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAM--DDKD 187
           K     G  + G ++HGL  K+G      V ++L+ MYAK G +D   RVF+ +  D +D
Sbjct: 172 KACGAEGDGRCGGEVHGLAVKVGLDKSTLVANALIGMYAKCGLLDSALRVFEWLQQDARD 231

Query: 188 LVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREI-- 241
           + SWN ++ G V+ G    A+ LF  M         ++   ++   ++ G + + RE+  
Sbjct: 232 VASWNSVVSGCVQNGRTLEALALFRGMQSAGFPMNSYTSVAVLQVCAELGLLSLGRELHA 291

Query: 242 -FYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEA 300
              +  +   +  NA++  Y K G VDSA  +F  +  +D I+WNSM++ Y  N  + EA
Sbjct: 292 ALLKCGSELNIQCNALLVMYAKYGRVDSALRVFGQIAEKDYISWNSMLSCYVQNSFYAEA 351

Query: 301 LELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQM 360
           ++    ML     P+ A +VS  SA+  L+ LN GR  H+Y +K     D  +G  L+ M
Sbjct: 352 IDFFGEMLQHGFQPDHACVVSLSSALGHLSRLNNGREFHAYAIKQRLHTDLQVGNTLMDM 411

Query: 361 YSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITF 420
           Y KCGSIE +  VF ++  +    WT ++         ++AL++  ++ + G+   ++  
Sbjct: 412 YIKCGSIECSAKVFESMGIRDHISWTTILACFAQSSRHSEALEMILELQKEGIMVDSMMI 471

Query: 421 IGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP 480
             +L  C     ++  ++     I +  ++  +E+   L+DI    G  + + +  + + 
Sbjct: 472 GSILETCCGLKSISLLKQVHCYAIRNGLLDLILENR--LIDIYGECGEFDHSLNLFQRVE 529

Query: 481 MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIK--VAPDTIGCYVVLSNIYAAAGQWDKV 538
            + + V W S+++   N+G  +   +    + K  + PD++    +L  I A      K 
Sbjct: 530 -KKDIVSWTSMINCCTNNGRLNGAVFLFTEMQKANIQPDSVALVSILVAI-AGLSSLTKG 587

Query: 539 SEVREMMKKRGF 550
            +V   + +R F
Sbjct: 588 KQVHGFLIRRNF 599


>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
            repeat-containing protein At3g23330 [Vitis vinifera]
          Length = 1008

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 248/732 (33%), Positives = 395/732 (53%), Gaps = 67/732 (9%)

Query: 19   LPSRLHWNILKFSST------HKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLH 72
            L S  +  +  FSST      +  ++ LHA  +K   +   G  + LL+LY      NL 
Sbjct: 283  LSSYFYPPLXYFSSTFSDSMNYPNSEVLHAKLIKNGCVGIRG--NHLLNLYAKSQ--NLE 338

Query: 73   YARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKG- 131
             A  +F+ I Q   +  + +LI  +     S + L LF  + D+ + P+ FTL  V+K  
Sbjct: 339  QAHKMFEEIPQ-TDVFSWTVLISGFARIGLSADVLGLFTKMQDQGVCPNQFTLSIVLKSC 397

Query: 132  AARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSW 191
            ++ +   + GK IHG + + G   D  + +S++  Y K        ++F  M +KD VSW
Sbjct: 398  SSNVNDSRIGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAEKLFGLMAEKDTVSW 457

Query: 192  NCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM----PN 247
            N ++  Y++ G+++ ++ LF ++P +D  SW  ++DG  + G   +A E+ Y+M    P 
Sbjct: 458  NIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVALELLYKMVAAGPA 517

Query: 248  RNLVSW-----------------------------------NAMINGYMKAGDVDSACEL 272
             N +++                                   N++I+ Y K G+++ A  +
Sbjct: 518  FNKLTFSIALVLASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCKCGEMEKASVI 577

Query: 273  FD---------------DMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDA 317
            F                D  + + ++W+SM++GY  NGRF +AL+    M+   V  +  
Sbjct: 578  FKHLPQESSMMNSEESCDDAVVESVSWSSMVSGYVQNGRFEDALKTFSFMICSQVEVDKF 637

Query: 318  TLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAI 377
            TL S +SA A   VL  GR +H YI K G  +D  LG+ +I MY KCGS+  A  +F   
Sbjct: 638  TLTSVVSACASAGVLELGRQVHGYIQKIGHGLDVFLGSSIIDMYVKCGSLNDAWLIFNQA 697

Query: 378  SKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGR 437
              + V  WT+MI G  +HG   +A+ LF  M   G+ P  ++F+GVL ACSHAGL+ +G 
Sbjct: 698  KDRNVVLWTSMISGCALHGQGREAVRLFELMINEGITPNEVSFVGVLTACSHAGLLEEGC 757

Query: 438  RYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARN 497
            +YF +M   YGI P  EH+ C+VD+  R G L E K  I +  +     +W S LS  R 
Sbjct: 758  KYFRLMREVYGIRPGAEHFTCMVDLYGRAGRLNEIKEFIHNNAISKLSSVWRSFLSSCRV 817

Query: 498  HGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSS 557
            H N ++G +    L+++ P   G Y++ S+I A   +W++ +++R +M++RG +K+P  S
Sbjct: 818  HKNIEMGIWVCKKLLELEPFDAGPYILFSSICATEHRWEEAAKIRSLMQQRGVKKNPSQS 877

Query: 558  SIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAE 617
             I+ +  +H FV+GD+SHPQ  +I+S L E+  +LK  G+  D T V+  +E Q++++  
Sbjct: 878  WIQLKNQVHSFVMGDRSHPQDTKIYSYLDELIGRLKEIGYSTDVTPVMQDVE-QEQRQVL 936

Query: 618  LENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHH 677
            L  HSE+LAIA+G+I+    +PIR++KNLRVC DCH+  K  S +  REII+RD  RFHH
Sbjct: 937  LGYHSEKLAIAYGIISTAPGTPIRVMKNLRVCIDCHNFIKYASELLGREIIIRDIHRFHH 996

Query: 678  FKNGSCSCKDFW 689
            FK+G CSC D+W
Sbjct: 997  FKHGHCSCADYW 1008


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 241/662 (36%), Positives = 374/662 (56%), Gaps = 16/662 (2%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +Q+HA+ V+         ++ L+ +YV   +  +  A  IF++ +    +V +N LI   
Sbjct: 222 RQVHAMVVRMGYEKDVFTANALVDMYVK--MGRVDIASVIFEK-MPDSDVVSWNALISGC 278

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
           V N   H A+ L   +    L+P+ F L  ++K  A  GA   G+QIHG + K     D 
Sbjct: 279 VLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDD 338

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
           ++   LV MYAK   +D   +VFD M  +DL+ WN LI G    G  + A  +F  +   
Sbjct: 339 YIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKE 398

Query: 218 DL----------FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVD 267
            L             T  ++  S   +V    E    + + ++V  N +I+ Y K   + 
Sbjct: 399 GLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVV--NGLIDSYWKCSCLS 456

Query: 268 SACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVA 327
            A  +F++    D+I   SMI           A++L   ML   + P+   L S L+A A
Sbjct: 457 DAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACA 516

Query: 328 GLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTA 387
            L+   +G+ +H++++K  F+ D   G  L+  Y+KCGSIE A   F ++ ++ V  W+A
Sbjct: 517 SLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSA 576

Query: 388 MIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDY 447
           MI GL  HG   +AL+LF +M   G+ P  IT   VL AC+HAGLV++ +RYFN M   +
Sbjct: 577 MIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMF 636

Query: 448 GIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYA 507
           GI+ T EHY C++D+L R G L++A   + SMP + N  +W +LL  +R H + ++G+ A
Sbjct: 637 GIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVHKDPELGKLA 696

Query: 508 ANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHE 567
           A  L  + P+  G +V+L+N YA++G W++V++VR++MK    +K+P  S +E +  +H 
Sbjct: 697 AEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEVKDKVHT 756

Query: 568 FVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAI 627
           F+VGDKSHP T EI+SKL E+ + +  AG++P+   V L   D+ EKE  L +HSERLA+
Sbjct: 757 FIVGDKSHPMTKEIYSKLDELGDLMSKAGYIPN-VDVDLHDLDRSEKELLLSHHSERLAV 815

Query: 628 AFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKD 687
           AF L++    +PIR+ KNLR+C DCH   K +S I +REII+RD +RFHHF++G+CSC D
Sbjct: 816 AFALLSTPPGAPIRVKKNLRICRDCHMAFKFISNIVSREIIIRDINRFHHFRDGTCSCGD 875

Query: 688 FW 689
           +W
Sbjct: 876 YW 877



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 133/482 (27%), Positives = 225/482 (46%), Gaps = 12/482 (2%)

Query: 27  ILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPS 86
           +LK     +   Q+HA+++ T       +++ L+++Y       +  AR +FD      +
Sbjct: 109 VLKCVPDAQLGAQVHAMAMATGFGSDVFVANALVAMY--GGFGFMDDARRVFDEAGSERN 166

Query: 87  LVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHG 146
            V +N L+  YV N +  +A+ +F +++   + P  F   CV+        I  G+Q+H 
Sbjct: 167 AVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHA 226

Query: 147 LVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEV 206
           +V ++G+  D F  ++LV MY K G +D+   +F+ M D D+VSWN LI G V  G    
Sbjct: 227 MVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHR 286

Query: 207 AMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWN----AMIN 258
           A++L  +M    L    F  + ++   +  G  ++ R+I   M   N  S +     +++
Sbjct: 287 AIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVD 346

Query: 259 GYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDAT 318
            Y K   +D A ++FD M  RDLI WN++I+G    GR  EA  +   +    +  N  T
Sbjct: 347 MYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTT 406

Query: 319 LVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS 378
           L + L + A L   +  R +H+   K GF+ D  +   LI  Y KC  +  A+ VF   S
Sbjct: 407 LAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECS 466

Query: 379 KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR 438
              +   T+MI  L        A+ LF +M R G++P       +LNAC+       G++
Sbjct: 467 SGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQ 526

Query: 439 YFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNH 498
               +I    +         LV    + G +E+A+    S+P R   V W +++ G   H
Sbjct: 527 VHAHLIKRQFMSDAFAG-NALVYTYAKCGSIEDAELAFSSLPER-GVVSWSAMIGGLAQH 584

Query: 499 GN 500
           G+
Sbjct: 585 GH 586



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 123/401 (30%), Positives = 205/401 (51%), Gaps = 21/401 (5%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYV 98
            LHA  +K+  +  + + + L+S Y          AR +FD I   P  V ++ L+  Y 
Sbjct: 25  HLHANLLKSGFL--ASLRNHLISFY--SKCRRPCCARRVFDEI-PDPCHVSWSSLVTAYS 79

Query: 99  FNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGA--ARLGAIKEGKQIHGLVFKLGFGFD 156
            N     A+  F  +    +  + F LP V+K    A+LGA     Q+H +    GFG D
Sbjct: 80  NNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDAQLGA-----QVHAMAMATGFGSD 134

Query: 157 KFVLSSLVSMYAKFGEIDLGRRVFD-AMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP 215
            FV ++LV+MY  FG +D  RRVFD A  +++ VSWN L+  YVK  +   A+++F EM 
Sbjct: 135 VFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMV 194

Query: 216 DRDL----FSWTCLVDGFSKCGKVEIAREI---FYRMP-NRNLVSWNAMINGYMKAGDVD 267
              +    F ++C+V+  +    ++  R++     RM   +++ + NA+++ Y+K G VD
Sbjct: 195 WSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVD 254

Query: 268 SACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVA 327
            A  +F+ M   D+++WN++I+G  LNG    A+ELL  M    ++PN   L S L A A
Sbjct: 255 IASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACA 314

Query: 328 GLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTA 387
           G    + GR +H +++K     D  +G  L+ MY+K   ++ A+ VF  +S + +  W A
Sbjct: 315 GAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNA 374

Query: 388 MIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACS 428
           +I G    G   +A  +F  + + G+     T   VL + +
Sbjct: 375 LISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTA 415



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 130/266 (48%), Gaps = 17/266 (6%)

Query: 37  TQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKC 96
           T+Q+HAL+ K   I+ + + + L+  Y     + L  A  +F+       + + +++   
Sbjct: 423 TRQVHALAEKIGFIFDAHVVNGLIDSYWK--CSCLSDAIRVFEECSSGDIIAVTSMIT-- 478

Query: 97  YVFNQRSH--EALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
              +Q  H   A+ LF ++L + L PD F L  ++   A L A ++GKQ+H  + K  F 
Sbjct: 479 -ALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFM 537

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
            D F  ++LV  YAK G I+     F ++ ++ +VSW+ +I G  + G  + A++LF  M
Sbjct: 538 SDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRM 597

Query: 215 PDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMP-----NRNLVSWNAMINGYMKAGD 265
            D  +     + T ++   +  G V+ A+  F  M      +R    ++ MI+   +AG 
Sbjct: 598 VDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGK 657

Query: 266 VDSACELFDDMEIR-DLITWNSMIAG 290
           +D A EL + M  + +   W +++  
Sbjct: 658 LDDAMELVNSMPFQANASVWGALLGA 683



 Score = 45.8 bits (107), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 95/240 (39%), Gaps = 11/240 (4%)

Query: 317 ATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRA 376
            T+   L+  A    L  G  +H+ ++K+GF+    L   LI  YSKC     A  VF  
Sbjct: 5   GTISQQLTRYAAAQALLPGAHLHANLLKSGFLAS--LRNHLISFYSKCRRPCCARRVFDE 62

Query: 377 ISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDG 436
           I       W++++     +G+   A+  F+ M   G+         VL     A L   G
Sbjct: 63  IPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDAQL---G 119

Query: 437 RRYFNM-MINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG- 494
            +   M M   +G +  + +   LV +    G++++A+   +      N V W  L+S  
Sbjct: 120 AQVHAMAMATGFGSDVFVAN--ALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAY 177

Query: 495 ARNHGNKD-IGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKD 553
            +N    D I  +       + P   G   V+ N    +   D   +V  M+ + G+ KD
Sbjct: 178 VKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVV-NACTGSRNIDAGRQVHAMVVRMGYEKD 236


>gi|356531902|ref|XP_003534515.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g23330-like [Glycine max]
          Length = 1011

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 241/705 (34%), Positives = 388/705 (55%), Gaps = 59/705 (8%)

Query: 40   LHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVF 99
            LHALSVK   +     ++ LL+LYV    +N+ +AR +FD I Q  +   + +LI  +  
Sbjct: 311  LHALSVKNGSLQTLNSANYLLTLYVKS--SNMDHARKLFDEIPQRNTQT-WTILISGFSR 367

Query: 100  NQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFV 159
               S     LF ++  +   P+ +TL  + K  +    ++ GK +H  + + G   D  +
Sbjct: 368  AGSSEVVFKLFREMRAKGACPNQYTLSSLFKCCSLDINLQLGKGVHAWMLRNGIDADVVL 427

Query: 160  LSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL 219
             +S++ +Y K    +   RVF+ M++ D+VSWN +I  Y++ G+VE ++ +F  +P +D+
Sbjct: 428  GNSILDLYLKCKVFEYAERVFELMNEGDVVSWNIMISAYLRAGDVEKSLDMFRRLPYKDV 487

Query: 220  FSWTCLVDGFSKCGKVEIAREIFYRMPN-------------------------------- 247
             SW  +VDG  + G    A E  Y M                                  
Sbjct: 488  VSWNTIVDGLMQFGYERQALEQLYCMVECGTEFSVVTFSIALILSSSLSLVELGRQLHGM 547

Query: 248  -------RNLVSWNAMINGYMKAGDVDSACELFDDMEI----------------RDLITW 284
                   R+    ++++  Y K G +D+A  +  D+ +                  +++W
Sbjct: 548  VLKFGFCRDGFIRSSLVEMYCKCGRMDNASIVLKDVPLDFLKNGNAGVTCKELKAGIVSW 607

Query: 285  NSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVK 344
              M++GY  NG++ + L+    M+   V+ +  T+ + +SA A   +L  GR +H+Y  K
Sbjct: 608  GLMVSGYVWNGKYEDGLKTFRLMVRELVVVDIRTVTTIISACANAGILEFGRHVHAYNHK 667

Query: 345  NGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDL 404
             G  +D  +G+ LI MYSK GS++ A T+FR  ++  +  WT+MI G  +HG   QA+ L
Sbjct: 668  IGHRIDAYVGSSLIDMYSKSGSLDDAWTIFRQTNEPNIVFWTSMISGCALHGQGKQAICL 727

Query: 405  FNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILC 464
            F +M   G+ P  +TF+GVLNAC HAGL+ +G RYF MM + Y I P +EH   +VD+  
Sbjct: 728  FEEMLNQGIIPNEVTFLGVLNACCHAGLLEEGCRYFRMMKDAYCINPGVEHCTSMVDLYG 787

Query: 465  RTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVV 524
            R G+L E K+ I    +     +W S LS  R H N ++G++ +  L++VAP   G YV+
Sbjct: 788  RAGHLTETKNFIFENGISHLTSVWKSFLSSCRLHKNVEMGKWVSEMLLQVAPSDPGAYVL 847

Query: 525  LSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSK 584
            LSN+ A+  +WD+ + VR +M +RG +K PG S I+ +  +H F++GD+SHPQ +EI+S 
Sbjct: 848  LSNMCASNHRWDEAARVRSLMHQRGIKKQPGQSWIQLKDQIHTFIMGDRSHPQDEEIYSY 907

Query: 585  LSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVK 644
            L  +  +LK  G+  D   V+  +E++ + E  + +HSE+LA+ FG+IN  +R+PIRI+K
Sbjct: 908  LDILIGRLKEIGYSFDVKLVMQDVEEE-QGEVLISHHSEKLAVVFGIINTANRTPIRIIK 966

Query: 645  NLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            NLR+C DCH+  K  S + +REII+RD  RFHHFK+G CSC D+W
Sbjct: 967  NLRICTDCHNFIKYASQLLDREIILRDIHRFHHFKHGGCSCGDYW 1011


>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
 gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 241/667 (36%), Positives = 372/667 (55%), Gaps = 39/667 (5%)

Query: 26  NILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHP 85
           NI K  +T K   Q+HA  +K  L     I+ +LL        ++L YA  +F R   +P
Sbjct: 13  NICKSLTTFK---QIHANVLKLGLESDPFIAGKLLHHCAISLSDSLDYACRLF-RYTPNP 68

Query: 86  SLVLYNLLIKCYVFNQRSHEALTLFCDLL-DRFLLPDNFTLPCVIKGAARLGAIKEGKQI 144
            + ++N LI+    + R  ++L  F ++  + F  PD+F+   ++K AA L +++ G Q+
Sbjct: 69  DVFMHNTLIRGLYESDRPQDSLLKFIEMRRNSFSPPDSFSFAFIVKAAANLRSVRVGIQL 128

Query: 145 HGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEV 204
           H      G     FV ++L+SMY + G +   R+VFD M + + ++WN ++    + G++
Sbjct: 129 HCQALVHGLDTHLFVGTTLISMYGECGFVGFARKVFDEMPEPNAIAWNAMVTACCRGGDM 188

Query: 205 EVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAG 264
           +   +LFD MP R+L SW  ++ G++K G++E+ARE+F  MP ++ VSW+ MI       
Sbjct: 189 KGGRELFDLMPVRNLMSWNVMLAGYTKAGELELAREMFLEMPMKDDVSWSTMI------- 241

Query: 265 DVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS 324
                                    G+  NG F EA      +    + PN+ +L   LS
Sbjct: 242 ------------------------VGFAHNGYFEEAFSFFRELQRKGMRPNETSLTGVLS 277

Query: 325 AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVF-RAISKKKVG 383
           A A    L  G+ +H +I K+G      +   L+  YSKCG++  A  VF R ++++ + 
Sbjct: 278 ACAQAGALEFGKILHGFIEKSGLAWIVSVNNALLDTYSKCGNVLMAQLVFERIMNERNIV 337

Query: 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMM 443
            WT+M+  L MHG   +A+ +F+KM   G++P  I FI +L ACSHAGLV  G  YF+ M
Sbjct: 338 SWTSMMAALAMHGHGEEAIGIFHKMEESGIRPDEIAFISLLYACSHAGLVEQGCEYFDKM 397

Query: 444 INDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDI 503
              Y IEP+IEHYGC+VD+  R G L++A   +  MP+    +IW +LL     HG+  +
Sbjct: 398 KGMYNIEPSIEHYGCMVDLYGRAGQLQKAYEFVCQMPIPCTAIIWRTLLGACSMHGDVKL 457

Query: 504 GEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRG 563
            E     L ++ P+    +V+LSN YA AG+W   + VR  M ++   K PG S IE   
Sbjct: 458 AEQVKERLSELDPNNSSDHVLLSNAYAVAGKWKDAASVRRSMTEQRITKTPGWSMIEVDK 517

Query: 564 VLHEFVVGDKSHPQTDEIHSKLSEMRNKLKA-AGHVPDTTQVLLCIEDQKEKEAELENHS 622
           +++ F+ G K +  T+E + KL E+  +L+   G+VP+  +VL  IE++ EKE  +  HS
Sbjct: 518 IMYTFLAGTKQYKITEEAYKKLKEIIRRLRVEGGYVPEIGRVLHDIEEE-EKEGSVSVHS 576

Query: 623 ERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGS 682
           E+LA+AFG+  +     IRIVKNLR+C DCH+V KL+S IY  EI+VRD SRFH FK+G 
Sbjct: 577 EKLAVAFGIARLCKGRTIRIVKNLRICRDCHAVMKLISQIYKVEIVVRDRSRFHSFKDGY 636

Query: 683 CSCKDFW 689
           CSC+D+W
Sbjct: 637 CSCRDYW 643


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 241/662 (36%), Positives = 374/662 (56%), Gaps = 16/662 (2%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +Q+HA+ V+         ++ L+ +YV   +  +  A  IF++ +    +V +N LI   
Sbjct: 129 RQVHAMVVRMGYEKDVFTANALVDMYV--KMGRVDIASVIFEK-MPDSDVVSWNALISGC 185

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
           V N   H A+ L   +    L+P+ F L  ++K  A  GA   G+QIHG + K     D 
Sbjct: 186 VLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDD 245

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
           ++   LV MYAK   +D   +VFD M  +DL+ WN LI G    G  + A  +F  +   
Sbjct: 246 YIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKE 305

Query: 218 DL----------FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVD 267
            L             T  ++  S   +V    E    + + ++V  N +I+ Y K   + 
Sbjct: 306 GLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVV--NGLIDSYWKCSCLS 363

Query: 268 SACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVA 327
            A  +F++    D+I   SMI           A++L   ML   + P+   L S L+A A
Sbjct: 364 DAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACA 423

Query: 328 GLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTA 387
            L+   +G+ +H++++K  F+ D   G  L+  Y+KCGSIE A   F ++ ++ V  W+A
Sbjct: 424 SLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSA 483

Query: 388 MIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDY 447
           MI GL  HG   +AL+LF +M   G+ P  IT   VL AC+HAGLV++ +RYFN M   +
Sbjct: 484 MIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMF 543

Query: 448 GIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYA 507
           GI+ T EHY C++D+L R G L++A   + SMP + N  +W +LL  +R H + ++G+ A
Sbjct: 544 GIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVHKDPELGKLA 603

Query: 508 ANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHE 567
           A  L  + P+  G +V+L+N YA++G W++V++VR++MK    +K+P  S +E +  +H 
Sbjct: 604 AEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEVKDKVHT 663

Query: 568 FVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAI 627
           F+VGDKSHP T EI+SKL E+ + +  AG++P+   V L   D+ EKE  L +HSERLA+
Sbjct: 664 FIVGDKSHPMTKEIYSKLDELGDLMSKAGYIPN-VDVDLHDLDRSEKELLLSHHSERLAV 722

Query: 628 AFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKD 687
           AF L++    +PIR+ KNLR+C DCH   K +S I +REII+RD +RFHHF++G+CSC D
Sbjct: 723 AFALLSTPPGAPIRVKKNLRICRDCHMAFKFISNIVSREIIIRDINRFHHFRDGTCSCGD 782

Query: 688 FW 689
           +W
Sbjct: 783 YW 784



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 133/482 (27%), Positives = 225/482 (46%), Gaps = 12/482 (2%)

Query: 27  ILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPS 86
           +LK     +   Q+HA+++ T       +++ L+++Y       +  AR +FD      +
Sbjct: 16  VLKCVPDAQLGAQVHAMAMATGFGSDVFVANALVAMY--GGFGFMDDARRVFDEAGSERN 73

Query: 87  LVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHG 146
            V +N L+  YV N +  +A+ +F +++   + P  F   CV+        I  G+Q+H 
Sbjct: 74  AVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHA 133

Query: 147 LVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEV 206
           +V ++G+  D F  ++LV MY K G +D+   +F+ M D D+VSWN LI G V  G    
Sbjct: 134 MVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHR 193

Query: 207 AMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWN----AMIN 258
           A++L  +M    L    F  + ++   +  G  ++ R+I   M   N  S +     +++
Sbjct: 194 AIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVD 253

Query: 259 GYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDAT 318
            Y K   +D A ++FD M  RDLI WN++I+G    GR  EA  +   +    +  N  T
Sbjct: 254 MYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTT 313

Query: 319 LVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS 378
           L + L + A L   +  R +H+   K GF+ D  +   LI  Y KC  +  A+ VF   S
Sbjct: 314 LAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECS 373

Query: 379 KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR 438
              +   T+MI  L        A+ LF +M R G++P       +LNAC+       G++
Sbjct: 374 SGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQ 433

Query: 439 YFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNH 498
               +I    +         LV    + G +E+A+    S+P R   V W +++ G   H
Sbjct: 434 VHAHLIKRQFMSDAFAG-NALVYTYAKCGSIEDAELAFSSLPER-GVVSWSAMIGGLAQH 491

Query: 499 GN 500
           G+
Sbjct: 492 GH 493



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 104/319 (32%), Positives = 172/319 (53%), Gaps = 16/319 (5%)

Query: 121 DNFTLPCVIKGA--ARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRR 178
           + F LP V+K    A+LGA     Q+H +    GFG D FV ++LV+MY  FG +D  RR
Sbjct: 9   NEFALPVVLKCVPDAQLGA-----QVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARR 63

Query: 179 VFD-AMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCG 233
           VFD A  +++ VSWN L+  YVK  +   A+++F EM    +    F ++C+V+  +   
Sbjct: 64  VFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSR 123

Query: 234 KVEIAREI---FYRMP-NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIA 289
            ++  R++     RM   +++ + NA+++ Y+K G VD A  +F+ M   D+++WN++I+
Sbjct: 124 NIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALIS 183

Query: 290 GYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVV 349
           G  LNG    A+ELL  M    ++PN   L S L A AG    + GR +H +++K     
Sbjct: 184 GCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADS 243

Query: 350 DGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMC 409
           D  +G  L+ MY+K   ++ A+ VF  +S + +  W A+I G    G   +A  +F  + 
Sbjct: 244 DDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLR 303

Query: 410 RMGMKPTAITFIGVLNACS 428
           + G+     T   VL + +
Sbjct: 304 KEGLGVNRTTLAAVLKSTA 322



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 126/264 (47%), Gaps = 13/264 (4%)

Query: 37  TQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKC 96
           T+Q+HAL+ K   I+ + + + L+  Y     + L  A  +F+       ++    +I  
Sbjct: 330 TRQVHALAEKIGFIFDAHVVNGLIDSYW--KCSCLSDAIRVFEEC-SSGDIIAVTSMITA 386

Query: 97  YVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFD 156
                    A+ LF ++L + L PD F L  ++   A L A ++GKQ+H  + K  F  D
Sbjct: 387 LSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSD 446

Query: 157 KFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD 216
            F  ++LV  YAK G I+     F ++ ++ +VSW+ +I G  + G  + A++LF  M D
Sbjct: 447 AFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVD 506

Query: 217 RDL----FSWTCLVDGFSKCGKVEIAREIFYRMP-----NRNLVSWNAMINGYMKAGDVD 267
             +     + T ++   +  G V+ A+  F  M      +R    ++ MI+   +AG +D
Sbjct: 507 EGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLD 566

Query: 268 SACELFDDMEIR-DLITWNSMIAG 290
            A EL + M  + +   W +++  
Sbjct: 567 DAMELVNSMPFQANASVWGALLGA 590


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 243/664 (36%), Positives = 363/664 (54%), Gaps = 46/664 (6%)

Query: 70  NLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLL-PDNFTLPCV 128
           +L  AR +FD+I Q P L  + +LI     + RS EA+  + D   +  + PD   L  V
Sbjct: 26  DLQRARHLFDKIPQ-PDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEPDKLLLLSV 84

Query: 129 IKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDL 188
            K  A L  +   K++H    + GF  D  + ++L+ MY K    +  R VF+ M  +D+
Sbjct: 85  AKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFEGMPFRDV 144

Query: 189 VSWNCLIDGYVKKGEVEVAMKLFDEM------PDR------------------------- 217
           +SW  +   YV  G +  A+  F +M      P+                          
Sbjct: 145 ISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLKSGREVHGF 204

Query: 218 --------DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSA 269
                   ++F  + LV+ ++ C  +  A+ +F  M  R+ VSWN +I  Y    + +  
Sbjct: 205 VVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYFLNKECEKG 264

Query: 270 CELFDDMEIR----DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSA 325
             +F  M       +  +WN++I G   NGR  +ALE+L  M      PN  T+ S L A
Sbjct: 265 LSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQITITSVLPA 324

Query: 326 VAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHW 385
              L  L  G+ +H YI ++ F  D    T L+ MY+KCG +E +  VF  ++K+    W
Sbjct: 325 CTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSRRVFSMMTKRDTVSW 384

Query: 386 TAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN 445
             MI+   MHG   +AL LF +M   G++P ++TF GVL+ CSH+ LV++G   F+ M  
Sbjct: 385 NTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDEGLLIFDSMSR 444

Query: 446 DYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGE 505
           D+ +EP  +H+ C+VD+L R G LEEA   I+ MP+ P    W +LL G R + N ++G 
Sbjct: 445 DHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPIEPTAGAWGALLGGCRVYKNVELGR 504

Query: 506 YAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVL 565
            AAN L ++  D  G YV+LSNI  +A  W + SE R++M+ RG  K+PG S I+ R  +
Sbjct: 505 IAANRLFEIESDNPGNYVLLSNILVSAKLWSEASETRKLMRDRGVTKNPGCSWIQVRNRV 564

Query: 566 HEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERL 625
           H FVVGDKS+ Q+DEI+  L  M  K++ AG++P+T  VL  + DQ+EKE  L NHSE+L
Sbjct: 565 HTFVVGDKSNDQSDEIYRFLDYMGEKMRIAGYLPNTDFVLQDV-DQEEKEEVLCNHSEKL 623

Query: 626 AIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSC 685
           A+AFG++N+   S IR+ KNLR+C DCH+  K ++ I   +IIVRD+ RFHHF++G CSC
Sbjct: 624 AVAFGVLNLNGESSIRVFKNLRICGDCHNAIKFMAKIVGVKIIVRDSLRFHHFRDGLCSC 683

Query: 686 KDFW 689
           +DFW
Sbjct: 684 QDFW 687



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 111/239 (46%), Gaps = 3/239 (1%)

Query: 257 INGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGD-VLPN 315
           I  Y  +GD+  A  LFD +   DL TW  +I+    +GR +EA++        + V P+
Sbjct: 18  IKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEPD 77

Query: 316 DATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFR 375
              L+S   A A L  +   + +H   ++ GF  D +LG  LI MY KC   E A  VF 
Sbjct: 78  KLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFE 137

Query: 376 AISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVND 435
            +  + V  WT+M       G+  +AL  F KM   G +P ++T   +L AC+    +  
Sbjct: 138 GMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLKS 197

Query: 436 GRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG 494
           GR     ++ + G+   +     LV++      + +A+   +SM  R + V W  L++ 
Sbjct: 198 GREVHGFVVRN-GMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRR-DTVSWNVLITA 254



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 85/198 (42%), Gaps = 15/198 (7%)

Query: 353 LGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFN----KM 408
           L    I++YS  G ++ A  +F  I +  +  WT +I  L  HG + +A+  +N    K 
Sbjct: 13  LALKFIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKN 72

Query: 409 CRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGY 468
           C   ++P  +  + V  AC+    V + +R     I  +G    +     L+D+  +   
Sbjct: 73  C---VEPDKLLLLSVAKACASLRDVMNAKRVHEDAIR-FGFCSDVLLGNALIDMYGKCRC 128

Query: 469 LEEAKSTIESMPMRPNFVIWMSLLSGARNHG--NKDIGEYAANNLIKVAPDTIGCYVVLS 526
            E A+   E MP R + + W S+ S   N G   + +G +    L    P++    V +S
Sbjct: 129 SEGARLVFEGMPFR-DVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNS----VTVS 183

Query: 527 NIYAAAGQWDKVSEVREM 544
           +I  A      +   RE+
Sbjct: 184 SILPACTDLKDLKSGREV 201


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 237/660 (35%), Positives = 367/660 (55%), Gaps = 40/660 (6%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +Q H+ ++K  +     +   LL LYV    +++  A   F                 CY
Sbjct: 372 KQFHSYAIKAGMTSDIVVEGSLLDLYVK--CSDIKTAHEFF----------------LCY 413

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
                 +++  +F  +    ++P+ FT P ++K    LGA   G+QIH  V K GF F+ 
Sbjct: 414 GQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNV 473

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
           +V S L+ MYAK G++D   ++F  + + D+VSW  +I GY +  +   A+ LF EM D+
Sbjct: 474 YVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQ 533

Query: 218 DLFSWTC-LVDGFSKCGKVEI---AREIFYRMP----NRNLVSWNAMINGYMKAGDVDSA 269
            + S         S C  ++     R+I  +      + +L   NA+++ Y + G V  A
Sbjct: 534 GIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYSDDLSIGNALVSLYARCGKVREA 593

Query: 270 CELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGL 329
              FD +  +D ++WNS+++G+  +G F EAL +   M    +  N  T  SA+SA A +
Sbjct: 594 YAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSAAANI 653

Query: 330 AVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMI 389
           A +  G+ +H  I K G+  +  +   LI +Y+KCG+I+                W +MI
Sbjct: 654 ANVRIGKQIHGMIRKTGYDSETEVSNALITLYAKCGTIDDI-------------SWNSMI 700

Query: 390 VGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGI 449
            G   HG   +AL LF  M ++ + P  +TF+GVL+ACSH GLV++G  YF  M   + +
Sbjct: 701 TGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLVDEGISYFRSMSEAHNL 760

Query: 450 EPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAAN 509
            P  EHY C+VD+L R+G L  AK  +E MP++P+ ++W +LLS    H N DIGE+AA+
Sbjct: 761 VPKPEHYACVVDLLGRSGLLSRAKRFVEEMPIQPDAMVWRTLLSACNVHKNIDIGEFAAS 820

Query: 510 NLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFV 569
           +L+++ P     YV++SN+YA +G+WD     R+MMK RG +K+PG S +E    +H F 
Sbjct: 821 HLLELEPKDSATYVLVSNMYAVSGKWDCRDRTRQMMKDRGVKKEPGRSWVEVDNSVHAFF 880

Query: 570 VGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAF 629
            GD++HP+ D I+  L  +  +    G+VP    +L   E +++   E+  HSERLAIAF
Sbjct: 881 AGDQNHPRADMIYEYLRGLDFRAAENGYVPRCNSLLSDAEIRQKDPTEII-HSERLAIAF 939

Query: 630 GLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           GL+++ S +P+ + KNLRVC DCH+  K +S I +R IIVRD+ RFHHFK GSCSCKD+W
Sbjct: 940 GLLSLTSSTPLYVFKNLRVCEDCHNWIKHVSKITDRVIIVRDSYRFHHFKVGSCSCKDYW 999



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 122/471 (25%), Positives = 221/471 (46%), Gaps = 44/471 (9%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +Q+HA ++ +     + I + L+ LY       L  A+ +F+ +    S V +  +I   
Sbjct: 184 EQIHAKTITSGFESSTFICNPLIDLYFKNGF--LSSAKKVFENLKARDS-VSWVAMISGL 240

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
             N    EA+ LFC +              V+    ++   + GKQ+HGLV K GF  + 
Sbjct: 241 SQNGYEEEAMLLFCQI--------------VLSACTKVEFFEFGKQLHGLVLKQGFSSET 286

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM--- 214
           +V ++LV++Y++ G +    ++F  M  +D VS+N LI G  ++G +  A+ LF +M   
Sbjct: 287 YVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLD 346

Query: 215 -PDRDLFSWTCLVDGFSKCGKVEIAREIF-YRMP---NRNLVSWNAMINGYMKAGDVDSA 269
               D  +   L+   +  G +   ++   Y +      ++V   ++++ Y+K  D+ +A
Sbjct: 347 CQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTA 406

Query: 270 CELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGL 329
            E F                 Y       ++ ++   M I  ++PN  T  S L     L
Sbjct: 407 HEFF---------------LCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTL 451

Query: 330 AVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMI 389
              + G  +H+ ++K GF  +  + ++LI MY+K G ++ AL +FR + +  V  WTAMI
Sbjct: 452 GATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMI 511

Query: 390 VGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR-YFNMMINDYG 448
            G   H   T+AL+LF +M   G+K   I F   ++AC+    ++ GR+ +    ++ Y 
Sbjct: 512 AGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYS 571

Query: 449 IEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
            + +I +   LV +  R G + EA +  + +  + N V W SL+SG    G
Sbjct: 572 DDLSIGN--ALVSLYARCGKVREAYAAFDQIYAKDN-VSWNSLVSGFAQSG 619



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 109/512 (21%), Positives = 222/512 (43%), Gaps = 65/512 (12%)

Query: 163 LVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL-FS 221
           L+  Y  FG+++    VFD M  + L  WN + + ++ +  +     LF  M  +++ F 
Sbjct: 103 LIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFD 162

Query: 222 WTCLVDGFSKCGKVEIAREIFYRMPNRNLVS--------WNAMINGYMKAGDVDSACELF 273
                     C    ++     ++  + + S         N +I+ Y K G + SA ++F
Sbjct: 163 ERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVF 222

Query: 274 DDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLN 333
           ++++ RD ++W +MI+G   NG   EA+ L   ++              LSA   +    
Sbjct: 223 ENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQIV--------------LSACTKVEFFE 268

Query: 334 KGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLG 393
            G+ +H  ++K GF  +  +   L+ +YS+ G++ SA  +F  +S++    + ++I GL 
Sbjct: 269 FGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLA 328

Query: 394 MHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTI 453
             G   +AL LF KM     KP  +T   +L+AC+  G + +G+++ +  I   G+   I
Sbjct: 329 QQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKA-GMTSDI 387

Query: 454 EHYGCLVDILCRTGYLEEAK-------------------STIESMPMRPNFVIWMSLLSG 494
              G L+D+  +   ++ A                    + ++   + PN   + S+L  
Sbjct: 388 VVEGSLLDLYVKCSDIKTAHEFFLCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKT 447

Query: 495 ARNHGNKDIGEYAANNLIKVAPDTIGCYV--VLSNIYAAAGQWDKVSEVREMMKKRGFRK 552
               G  D+GE     ++K        YV  VL ++YA  G+ D   ++        FR+
Sbjct: 448 CTTLGATDLGEQIHTQVLKTGFQ-FNVYVSSVLIDMYAKHGKLDHALKI--------FRR 498

Query: 553 DPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLC----- 607
              +  +    +    + G   H +  E  +   EM+++   + ++   + +  C     
Sbjct: 499 LKENDVVSWTAM----IAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQA 554

Query: 608 IEDQKEKEAE--LENHSERLAIAFGLINVKSR 637
           ++  ++  A+  L  +S+ L+I   L+++ +R
Sbjct: 555 LDQGRQIHAQSCLSGYSDDLSIGNALVSLYAR 586


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 248/733 (33%), Positives = 389/733 (53%), Gaps = 84/733 (11%)

Query: 36  ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIK 95
           +T Q HA  +K+       IS++L++ Y   + N  + A  +   I   P++  ++ LI 
Sbjct: 33  KTTQAHARILKSGAQNDGYISAKLIASY--SNYNCFNDADLVLQSI-PDPTIYSFSSLIY 89

Query: 96  CYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF 155
                +   +++ +F  +    L+PD+  LP + K  A L A K GKQIH +    G   
Sbjct: 90  ALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDM 149

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP 215
           D FV  S+  MY + G +   R+VFD M DKD+V+ + L+  Y +KG +E  +++  EM 
Sbjct: 150 DAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEME 209

Query: 216 ----DRDLFSWTCLVDGFSKCGKVEIAREIFYRM------PNRNLVS------------- 252
               + ++ SW  ++ GF++ G  + A  +F ++      P++  VS             
Sbjct: 210 SSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLN 269

Query: 253 --------------------WNAMINGYMKAGD--------------------------- 265
                                +AMI+ Y K+G                            
Sbjct: 270 MGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLS 329

Query: 266 ----VDSACELFD-----DMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPND 316
               VD A E+F+      ME+ ++++W S+IAG   NG+ +EALEL   M +  V PN 
Sbjct: 330 RNGLVDKALEMFELFKEQTMEL-NVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNH 388

Query: 317 ATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRA 376
            T+ S L A   +A L  GR  H + V+   + +  +G+ LI MY+KCG I  +  VF  
Sbjct: 389 VTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNM 448

Query: 377 ISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDG 436
           +  K +  W +++ G  MHG A + + +F  + R  +KP  I+F  +L+AC   GL ++G
Sbjct: 449 MPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEG 508

Query: 437 RRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGAR 496
            +YF MM  +YGI+P +EHY C+V++L R G L+EA   I+ MP  P+  +W +LL+  R
Sbjct: 509 WKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCR 568

Query: 497 NHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGS 556
              N D+ E AA  L  + P+  G YV+LSNIYAA G W +V  +R  M+  G +K+PG 
Sbjct: 569 LQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGC 628

Query: 557 SSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEA 616
           S I+ +  ++  + GDKSHPQ D+I  K+ E+  +++ +GH P+    L  +E+Q E+E 
Sbjct: 629 SWIQVKNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQ-EQEQ 687

Query: 617 ELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFH 676
            L  HSE+LA+ FGL+N    +P++++KNLR+C DCH+V K +S    REI +RD +RFH
Sbjct: 688 MLWGHSEKLAVVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFH 747

Query: 677 HFKNGSCSCKDFW 689
           HFK+G CSC DFW
Sbjct: 748 HFKDGICSCGDFW 760


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 241/658 (36%), Positives = 375/658 (56%), Gaps = 16/658 (2%)

Query: 45  VKTNLIYHSGISSRLL--SLYVDPHI--NNLHYARSIFDRILQHPSLVLYNLLIKCYVFN 100
           V+T +I   G  SRL+  +  VD +   N L  A  +F  + +  S V YN +I  Y  +
Sbjct: 171 VQTQII-KLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDS-VSYNAMITGYSKD 228

Query: 101 QRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVL 160
               +A+ LF ++ +  L P  FT   V+     L  I  G+QIH  V K  F ++ FV 
Sbjct: 229 GLDEKAVNLFVEMQNSGLKPTEFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVS 288

Query: 161 SSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP----D 216
           ++L+  Y+K   +   R++FD M ++D VS+N +I GY   G+ + A  LF E+     D
Sbjct: 289 NALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFD 348

Query: 217 RDLFSWTCLVDGFSKCGKVEIAREIFYRM----PNRNLVSWNAMINGYMKAGDVDSACEL 272
           R  F +  ++   S     E+ R+I  +      +  ++  N++++ Y K G  + A  +
Sbjct: 349 RKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMI 408

Query: 273 FDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVL 332
           F ++  R  + W +MI+ Y   G + E L+L   M    V+ + AT  S L A A +A L
Sbjct: 409 FTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASL 468

Query: 333 NKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGL 392
           + G+ +HS+I+K+GF+ +   G+ L+ +Y+KCGSI+ A+  F+ +  + +  W AMI   
Sbjct: 469 SLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAY 528

Query: 393 GMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT 452
             +G A   L  F +M   G++P +++F+GVL+ACSH+GLV +G  +FN M   Y ++P 
Sbjct: 529 AQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPR 588

Query: 453 IEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLI 512
            EHY  +VD+LCR+G   EA+  +  MP+ P+ ++W S+L+  R H N+++   AA+ L 
Sbjct: 589 REHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLF 648

Query: 513 KVAP-DTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVG 571
            +        YV +SNIYAAAGQW+ VS+V + M+ RG +K P  S +E +   H F   
Sbjct: 649 NMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWVEIKHETHMFSAN 708

Query: 572 DKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGL 631
           D+ HPQ +EI  K+  +   ++  G+ PDT+   L  ED+K K   L+ HSERLAIAF L
Sbjct: 709 DRCHPQIEEIRKKIDMLTKTMEELGYKPDTS-CALHNEDEKFKVESLKYHSERLAIAFAL 767

Query: 632 INVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           I+    SPI ++KNLR C DCH+  K++S I  REI VRD++RFHHF++G CSC DFW
Sbjct: 768 ISTPEGSPILVMKNLRACIDCHAAIKVISKIVGREITVRDSTRFHHFRDGFCSCGDFW 825



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 130/497 (26%), Positives = 226/497 (45%), Gaps = 26/497 (5%)

Query: 41  HALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFN 100
           H  +V TN+         ++S YV     NL  AR +FD +++  + V + +LI  Y   
Sbjct: 80  HKNTVSTNM---------MISGYVKS--GNLGEARKLFDGMVERTA-VTWTILIGGYSQL 127

Query: 101 QRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVL 160
            +  EA  LF  +      PD  T   ++ G        +  Q+   + KLG+     V 
Sbjct: 128 NQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVG 187

Query: 161 SSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL- 219
           ++LV  Y K   +DL  ++F  M + D VS+N +I GY K G  E A+ LF EM +  L 
Sbjct: 188 NTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLK 247

Query: 220 ---FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSW-----NAMINGYMKAGDVDSACE 271
              F++  ++        + + ++I   +   N V W     NA+++ Y K   V  A +
Sbjct: 248 PTEFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFV-WNVFVSNALLDFYSKHDSVIDARK 306

Query: 272 LFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAV 331
           LFD+M  +D +++N +I+GY  +G+   A +L   +             + LS  +    
Sbjct: 307 LFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLD 366

Query: 332 LNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVG 391
              GR +H+  +      + ++G  L+ MY+KCG  E A  +F  ++ +    WTAMI  
Sbjct: 367 WEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISA 426

Query: 392 LGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP 451
               G   + L LFNKM +  +     TF  +L A +    ++ G++  + +I   G   
Sbjct: 427 YVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKS-GFMS 485

Query: 452 TIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKD--IGEYAAN 509
            +     L+D+  + G +++A  T + MP R N V W +++S    +G  +  +  +   
Sbjct: 486 NVFSGSALLDVYAKCGSIKDAVQTFQEMPDR-NIVSWNAMISAYAQNGEAEATLKSFKEM 544

Query: 510 NLIKVAPDTIGCYVVLS 526
            L  + PD++    VLS
Sbjct: 545 VLSGLQPDSVSFLGVLS 561



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 103/395 (26%), Positives = 173/395 (43%), Gaps = 41/395 (10%)

Query: 144 IHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGE 203
           I   + K GF  D    +  V  + K GE+   R++F+ M  K+ VS N +I GYVK G 
Sbjct: 39  IDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGN 98

Query: 204 VEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMP----------------- 246
           +  A KLFD M +R   +WT L+ G+S+  + + A E+F +M                  
Sbjct: 99  LGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSG 158

Query: 247 ----------------------NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITW 284
                                 +  L+  N +++ Y K+  +D AC+LF +M   D +++
Sbjct: 159 CNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSY 218

Query: 285 NSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVK 344
           N+MI GY  +G   +A+ L   M    + P + T  + L A  GL  +  G+ +HS+++K
Sbjct: 219 NAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVLCANIGLDDIVLGQQIHSFVIK 278

Query: 345 NGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDL 404
             FV +  +   L+  YSK  S+  A  +F  + ++    +  +I G    G    A DL
Sbjct: 279 TNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDL 338

Query: 405 FNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILC 464
           F ++           F  +L+  S+      GR+     I     +  I     LVD+  
Sbjct: 339 FRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTA-DSEILVGNSLVDMYA 397

Query: 465 RTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
           + G  EEA+    ++  R + V W +++S     G
Sbjct: 398 KCGKFEEAEMIFTNLTHR-SAVPWTAMISAYVQKG 431



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 133/283 (46%), Gaps = 42/283 (14%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           QQ+H+  +KTN +++  +S+ LL  Y   H +++  AR +FD + +    V YN++I  Y
Sbjct: 270 QQIHSFVIKTNFVWNVFVSNALLDFY-SKH-DSVIDARKLFDEMPEQDG-VSYNVIISGY 326

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
            ++ +   A  LF +L         F    ++  A+     + G+QIH          + 
Sbjct: 327 AWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEI 386

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD- 216
            V +SLV MYAK G+ +    +F  +  +  V W  +I  YV+KG  E  ++LF++M   
Sbjct: 387 LVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQA 446

Query: 217 --------------------------------------RDLFSWTCLVDGFSKCGKVEIA 238
                                                  ++FS + L+D ++KCG ++ A
Sbjct: 447 SVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDA 506

Query: 239 REIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDL 281
            + F  MP+RN+VSWNAMI+ Y + G+ ++  + F +M +  L
Sbjct: 507 VQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGL 549


>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
          Length = 649

 Score =  437 bits (1124), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 225/582 (38%), Positives = 340/582 (58%), Gaps = 37/582 (6%)

Query: 143 QIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKG 202
           QIH  +   GF     + + L+++Y+ F + DL R VFD+  +   + WN +I  Y +  
Sbjct: 70  QIHAQIIVSGFKHHHSI-THLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSK 128

Query: 203 EVEVAMKLFDEMPD-----RDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMI 257
           +   A++++  M +     RD+F    LVD +SK G ++ ARE+F +MP R++V+WNAMI
Sbjct: 129 QYNEALEMYYCMVEKGGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMI 188

Query: 258 NGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL---- 313
            G  ++ D   A  +FD M  +D ++W +M+AGY  NG F+E LEL + M +G+V     
Sbjct: 189 AGLSQSEDPYVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVTWNVI 248

Query: 314 --------------------------PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGF 347
                                     PN  T VS L A A LA   +G   H+ I++ GF
Sbjct: 249 IAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGF 308

Query: 348 VVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNK 407
           + + ++G  LI MY+KCG ++ +  +F  +  K    W AM+ G  +HG   +A+ LF+ 
Sbjct: 309 LSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSL 368

Query: 408 MCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTG 467
           M    ++  +++F+ VL+AC HAGLV +GR+ F+ M + Y I+P +EHY C+VD+L R G
Sbjct: 369 MQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAG 428

Query: 468 YLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSN 527
             +E    I+ MP+ P+  +W +LL   R H N  +GE A ++L+K+ P     +VVLS+
Sbjct: 429 LFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSS 488

Query: 528 IYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSE 587
           IYA +G+W    + R  M   G +K PG S +E +  +H F VGDKSHPQ + +H   + 
Sbjct: 489 IYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNT 548

Query: 588 MRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLR 647
           +  K++  G+VPD + VL  +E++ +KE  L +HSERLAI F L+N    S I+IVKNLR
Sbjct: 549 LLEKMEKIGYVPDRSCVLQNVEEE-DKEMFLYSHSERLAITFALLNTPPGSTIQIVKNLR 607

Query: 648 VCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           VC DCH+ TK +S I  R IIVRD +RFHHF++G CSC D+W
Sbjct: 608 VCADCHTTTKFISKITTRRIIVRDATRFHHFEDGICSCNDYW 649



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 124/262 (47%), Gaps = 20/262 (7%)

Query: 88  VLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGL 147
           V +N++I  Y+ N  + EA++ F  +      P++ T   V+  AA L A +EG   H  
Sbjct: 243 VTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHAC 302

Query: 148 VFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVA 207
           + ++GF  +  V +SL+ MYAK G++D   ++F+ MD KD VSWN ++ GY   G  + A
Sbjct: 303 IIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRA 362

Query: 208 MKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREIFYRMPNR-----NLVSWNAMIN 258
           + LF  M +     D  S+  ++      G VE  R+IF+ M ++     +L  +  M++
Sbjct: 363 IALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVD 422

Query: 259 GYMKAGDVDSACELFDDMEIR-DLITWNSMIAGYELNGRFMEALELLETML--IGDVLPN 315
              +AG  D        M +  D   W +++     + R    ++L E  L  +  + P 
Sbjct: 423 LLGRAGLFDETLGFIKVMPVEPDAGVWGALLG----SCRMHSNVKLGEVALDHLVKLEPR 478

Query: 316 DATLVSALSAVAGLAVLNKGRW 337
           +      LS++        GRW
Sbjct: 479 NPAHFVVLSSIYA----QSGRW 496


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 252/708 (35%), Positives = 390/708 (55%), Gaps = 61/708 (8%)

Query: 40  LHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHP--SLVLYNLLIKCY 97
           +HA+   +   ++  + + L+S+Y          AR +FD + +     LV +N ++  Y
Sbjct: 148 VHAVVFASGFEWNVFVGNGLVSMY--GRCGAWENARQVFDEMRERGVGDLVSWNSIVAAY 205

Query: 98  VFNQRSHEALTLFCDLL-DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFD 156
           +    S  A+ +F  +  D  + PD  +L  V+   A +GA   GKQ+HG   + G   D
Sbjct: 206 MQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFED 265

Query: 157 KFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD 216
            FV +++V MYAK G ++   +VF+ M  KD+VSWN ++ GY + G  + A+ LF+++ +
Sbjct: 266 VFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIRE 325

Query: 217 R----DLFSWTCLVDGFSKCGKVEIAREIFYRM--------------------------- 245
                ++ +W+ ++ G+++ G    A ++F +M                           
Sbjct: 326 EKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLH 385

Query: 246 -------------------PNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRD--LITW 284
                              P  +L+  NA+I+ Y K     +A  +FD +  +D  ++TW
Sbjct: 386 GKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTW 445

Query: 285 NSMIAGYELNGRFMEALELLETMLIGD--VLPNDATLVSALSAVAGLAVLNKGRWMHSYI 342
             +I G   +G   EALEL   ML  D  V+PN  T+  AL A A L  L  GR +H+Y+
Sbjct: 446 TVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYV 505

Query: 343 VKNGFVVDGV-LGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQA 401
           ++N F    + +   LI MYSK G +++A  VF  + ++    WT+++ G GMHG   +A
Sbjct: 506 LRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEA 565

Query: 402 LDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVD 461
           L +F +M ++G+ P  +TF+ VL ACSH+G+V+ G  YFN M  D+G+ P  EHY C+VD
Sbjct: 566 LQIFYEMQKVGLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVD 625

Query: 462 ILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGC 521
           +L R G L+EA   I  MPM+P   +W++LLS  R + N ++GEYAAN L+++     G 
Sbjct: 626 LLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLELESGNDGS 685

Query: 522 YVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEI 581
           Y +LSNIYA A  W  V+ +R +MK  G +K PG S ++ R     F  GD SHP + +I
Sbjct: 686 YTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDWSHPMSQQI 745

Query: 582 HSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIR 641
           +  L ++  ++KA G+VPD    L  ++D+ EK   L  HSE+LA+A+G++     +PIR
Sbjct: 746 YDLLRDLMQRIKALGYVPDNRFALHDVDDE-EKGDLLSEHSEKLALAYGILTTAPGAPIR 804

Query: 642 IVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           I KNLR C DCHS    +S I   EIIVRD+SRFHHFKNGSCSC+ +W
Sbjct: 805 ITKNLRACGDCHSAFTYISIIIEHEIIVRDSSRFHHFKNGSCSCRGYW 852



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 162/532 (30%), Positives = 258/532 (48%), Gaps = 68/532 (12%)

Query: 57  SRLLSLYVDPHINNLHYARSIFDRILQHPS---LVLYNLLIKCYVFNQRSHEALTLFCDL 113
           + ++S+Y+    N+   A S+  R+  HPS   +  +N LI+  V      + L L+  +
Sbjct: 62  THIISMYLT--FNSPAKALSVLRRL--HPSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRM 117

Query: 114 LDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEI 173
                 PD++T P V+K    + + + G  +H +VF  GF ++ FV + LVSMY + G  
Sbjct: 118 QRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAW 177

Query: 174 DLGRRVFDAMDDK---DLVSWNCLIDGYVKKGEVEVAMKLFDEM-------PD------- 216
           +  R+VFD M ++   DLVSWN ++  Y++ G+   AMK+F+ M       PD       
Sbjct: 178 ENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNV 237

Query: 217 --------------------------RDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNL 250
                                      D+F    +VD ++KCG +E A ++F RM  +++
Sbjct: 238 LPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDV 297

Query: 251 VSWNAMINGYMKAGDVDSACELFDDMEIR----DLITWNSMIAGYELNGRFMEALELLET 306
           VSWNAM+ GY + G  D A  LF+ +       +++TW+++IAGY   G   EAL++   
Sbjct: 298 VSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQ 357

Query: 307 MLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVK-------NGFVVDGVLGTLLIQ 359
           M +    PN  TLVS LS  A    L  G+  H + +K       N    D ++   LI 
Sbjct: 358 MRLCGSEPNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALID 417

Query: 360 MYSKCGSIESALTVFRAISKK--KVGHWTAMIVGLGMHGMATQALDLFNKMCRMG--MKP 415
           MYSKC S ++A  +F  I  K   V  WT +I G   HG A +AL+LF++M +    + P
Sbjct: 418 MYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMP 477

Query: 416 TAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKST 475
            A T    L AC+  G +  GR+    ++ +      +    CL+D+  ++G ++ A+  
Sbjct: 478 NAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVV 537

Query: 476 IESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVA--PDTIGCYVVL 525
            ++M  R N V W SL++G   HG  +        + KV   PD +   VVL
Sbjct: 538 FDNMHQR-NGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVVL 588


>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 751

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 241/663 (36%), Positives = 366/663 (55%), Gaps = 17/663 (2%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +QLHA+ ++   + ++ +S+  L+LY       L Y   +FD++ Q  ++V +  +I  +
Sbjct: 95  KQLHAMLIRGGCLPNTFLSNHFLNLY--SKCGELDYTIKLFDKMSQR-NMVSWTSIITGF 151

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
             N R  EAL+ FC +     +   F L  V++    LGAI+ G Q+H LV K GFG + 
Sbjct: 152 AHNSRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLGAIQFGTQVHCLVVKCGFGCEL 211

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
           FV S+L  MY+K GE+    + F+ M  KD V W  +IDG+VK G+ + A+  + +M   
Sbjct: 212 FVGSNLTDMYSKCGELSDACKAFEEMPCKDAVLWTSMIDGFVKNGDFKKALTAYMKMVTD 271

Query: 218 DLF-SWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSW---------NAMINGYMKAGDVD 267
           D+F     L    S C  ++ +   F +  +  ++           NA+ + Y K+GD+ 
Sbjct: 272 DVFIDQHVLCSTLSACSALKASS--FGKSLHATILKLGFEYETFIGNALTDMYSKSGDMV 329

Query: 268 SACELFD-DMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326
           SA  +F    +   +++  ++I GY    +  +AL     +    + PN+ T  S + A 
Sbjct: 330 SASNVFQIHSDCISIVSLTAIIDGYVEMDQIEKALSTFVDLRRRGIEPNEFTFTSLIKAC 389

Query: 327 AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWT 386
           A  A L  G  +H  +VK  F  D  + + L+ MY KCG  + ++ +F  I       W 
Sbjct: 390 ANQAKLEHGSQLHGQVVKFNFKRDPFVSSTLVDMYGKCGLFDHSIQLFDEIENPDEIAWN 449

Query: 387 AMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIND 446
            ++     HG+   A++ FN M   G+KP A+TF+ +L  CSHAG+V DG  YF+ M   
Sbjct: 450 TLVGVFSQHGLGRNAIETFNGMIHRGLKPNAVTFVNLLKGCSHAGMVEDGLNYFSSMEKI 509

Query: 447 YGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEY 506
           YG+ P  EHY C++D+L R G L+EA+  I +MP  PN   W S L   + HG+ +  ++
Sbjct: 510 YGVVPKEEHYSCVIDLLGRAGKLKEAEDFINNMPFEPNVFGWCSFLGACKIHGDMERAKF 569

Query: 507 AANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLH 566
           AA+ L+K+ P+  G +V+LSNIYA   QW+ V  +R+M+K     K PG S ++ R   H
Sbjct: 570 AADKLMKLEPENSGAHVLLSNIYAKEKQWEDVQSLRKMIKDGNMNKLPGYSWVDIRNKTH 629

Query: 567 EFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLA 626
            F V D SHPQ  EI+ KL  + +++K  G+VP T  VL+ ++D   KE  L  HSER+A
Sbjct: 630 VFGVEDWSHPQKKEIYEKLDNLLDQIKRIGYVPQTESVLIDMDDNL-KEKLLHYHSERIA 688

Query: 627 IAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCK 686
           +AF L+   +  PI + KNLRVC+DCHS  K +S +  R IIVRD SRFHHF NGSCSC 
Sbjct: 689 VAFSLLTCPTGMPIIVKKNLRVCSDCHSALKFISKVTERNIIVRDISRFHHFSNGSCSCG 748

Query: 687 DFW 689
           D+W
Sbjct: 749 DYW 751



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 103/422 (24%), Positives = 183/422 (43%), Gaps = 75/422 (17%)

Query: 119 LPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRR 178
           L D  T+  +I+  AR   + +GKQ+H ++ + G   + F+ +  +++Y+K GE+D   +
Sbjct: 72  LSDTKTVAHLIQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGELDYTIK 131

Query: 179 VFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR--------------------- 217
           +FD M  +++VSW  +I G+      + A+  F +M                        
Sbjct: 132 LFDKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLGA 191

Query: 218 ------------------DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMING 259
                             +LF  + L D +SKCG++  A + F  MP ++ V W +MI+G
Sbjct: 192 IQFGTQVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEMPCKDAVLWTSMIDG 251

Query: 260 YMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATL 319
           ++K                               NG F +AL     M+  DV  +   L
Sbjct: 252 FVK-------------------------------NGDFKKALTAYMKMVTDDVFIDQHVL 280

Query: 320 VSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK 379
            S LSA + L   + G+ +H+ I+K GF  +  +G  L  MYSK G + SA  VF+  S 
Sbjct: 281 CSTLSACSALKASSFGKSLHATILKLGFEYETFIGNALTDMYSKSGDMVSASNVFQIHSD 340

Query: 380 -KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR 438
              +   TA+I G        +AL  F  + R G++P   TF  ++ AC++   +  G +
Sbjct: 341 CISIVSLTAIIDGYVEMDQIEKALSTFVDLRRRGIEPNEFTFTSLIKACANQAKLEHGSQ 400

Query: 439 YFNMMIN-DYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARN 497
               ++  ++  +P +     LVD+  + G  + +    + +   P+ + W +L+     
Sbjct: 401 LHGQVVKFNFKRDPFVS--STLVDMYGKCGLFDHSIQLFDEIE-NPDEIAWNTLVGVFSQ 457

Query: 498 HG 499
           HG
Sbjct: 458 HG 459



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 93/192 (48%), Gaps = 4/192 (2%)

Query: 310 GDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIES 369
           G  L +  T+   +   A    LNKG+ +H+ +++ G + +  L    + +YSKCG ++ 
Sbjct: 69  GHKLSDTKTVAHLIQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGELDY 128

Query: 370 ALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSH 429
            + +F  +S++ +  WT++I G   +    +AL  F +M   G   T      VL AC+ 
Sbjct: 129 TIKLFDKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFALSSVLQACTS 188

Query: 430 AGLVNDGRRYFNMMIN-DYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIW 488
            G +  G +   +++   +G E  +     L D+  + G L +A    E MP + + V+W
Sbjct: 189 LGAIQFGTQVHCLVVKCGFGCELFVGSN--LTDMYSKCGELSDACKAFEEMPCK-DAVLW 245

Query: 489 MSLLSGARNHGN 500
            S++ G   +G+
Sbjct: 246 TSMIDGFVKNGD 257


>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
          Length = 686

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 219/576 (38%), Positives = 343/576 (59%), Gaps = 4/576 (0%)

Query: 28  LKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSL 87
           ++   T K+  Q+ A  +     Y+  I+ +L+++     +  + YAR +FD+I   P++
Sbjct: 108 MRSCKTSKQVHQIQAQIIANGFQYNEYITPKLVTICAT--LKRMTYARQLFDQI-PDPNI 164

Query: 88  VLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGL 147
            L+N + + Y  ++   E + LF  +    + P+ FT P V+K   ++ A+ EG+Q+H  
Sbjct: 165 ALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCF 224

Query: 148 VFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVA 207
           + K GF  + FV ++L+ MY+  G +    ++F  M ++++V+W  +I+GY+   ++  A
Sbjct: 225 LIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSA 284

Query: 208 MKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVD 267
            +LFD  P+RD+  W  +V G+ + G +  AR++F  MPNR+++ WN ++ GY   G+V+
Sbjct: 285 RRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFXEMPNRDVMFWNTVLKGYATNGNVE 344

Query: 268 SACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLI-GDVLPNDATLVSALSAV 326
           +   LF++M  R++ +WN++I GY  NG F E L   + ML   DV PNDATLV+ LSA 
Sbjct: 345 ALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSAC 404

Query: 327 AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWT 386
           A L  L+ G+W+H Y   +G   +  +G  L+ MY+KCG IE+A++VFR +  K +  W 
Sbjct: 405 ARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWN 464

Query: 387 AMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIND 446
            +I GL MH     AL+LF +M   G KP  ITFIG+L AC+H GLV DG  YF  M +D
Sbjct: 465 TLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADD 524

Query: 447 YGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEY 506
           Y I P IEHYGC+VD+L R G LE+A + +  MP+  + VIW  LL   R + N ++ E 
Sbjct: 525 YLIMPQIEHYGCMVDMLARAGRLEQAXAFVRKMPVEADGVIWAGLLGACRIYKNVELAEL 584

Query: 507 AANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLH 566
           A   LI++ P     YV+LSNIY  AG+W+ V+ ++  M+  GF+K PG S IE    + 
Sbjct: 585 ALQRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLIEVNDAVV 644

Query: 567 EFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTT 602
           EF   D+ HPQ +EI+  L  +   L++ G+VPD T
Sbjct: 645 EFYSLDERHPQIEEIYGVLRGLVKVLRSFGYVPDLT 680


>gi|125547694|gb|EAY93516.1| hypothetical protein OsI_15309 [Oryza sativa Indica Group]
          Length = 613

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 237/575 (41%), Positives = 331/575 (57%), Gaps = 20/575 (3%)

Query: 124 TLPCVIKGAARL-GAIKEGKQIHGLVFKLGFGFDKFVLSSLVSM------YAKFGEIDLG 176
           T  C++ G AR  G + + + +          FD+     +VS       +   G+ D  
Sbjct: 50  TYNCLLAGYARAPGRLADARHL----------FDRIPTPDVVSYNTLLLCHFASGDADGA 99

Query: 177 RRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVE 236
           RR+F +M  +D+ SWN ++ G  K G VE A  +F  MP R+  SW  +V GF+  G + 
Sbjct: 100 RRLFASMPVRDVASWNTMVSGLSKSGAVEEAKVVFLAMPVRNSVSWNAMVSGFACSGDMS 159

Query: 237 IAREIFYRMPNR-NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNG 295
            A E F   P + + V W AM++GYM  G+V  A + F+ M +R+L++WN+++AGY  N 
Sbjct: 160 TAEEWFRNAPEKEDAVLWTAMVSGYMDIGNVVKAIKYFEAMPVRNLVSWNAVVAGYVKNS 219

Query: 296 RFMEALELLETMLI-GDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLG 354
              +AL L  TM+   +V PN +TL S L   + L+ L  G+ +H + +K     +  +G
Sbjct: 220 HADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLLLSRNLTVG 279

Query: 355 TLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMK 414
           T L+ MY KCG + SA  +F  +  + V  W AMI G   HG   +A++LF +M   G++
Sbjct: 280 TSLVSMYCKCGDLSSACILFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVE 339

Query: 415 PTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKS 474
           P  ITF+ VL AC H GL + G + F  M   YGIEP ++HY C+VD+LCR G LE A  
Sbjct: 340 PNWITFVVVLTACIHTGLCDFGIQCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVD 399

Query: 475 TIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQ 534
            I SMP  P+   + +LL+  R + N +  E AA  LI+  P + G YV L+NIYA A Q
Sbjct: 400 FIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAVANQ 459

Query: 535 WDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKA 594
           WD VS VR  MK     K PG S IE +GVLHEF   D+ HPQ   IH KL ++  ++K 
Sbjct: 460 WDDVSRVRRWMKDNTVVKTPGYSWIEIKGVLHEFRSNDRLHPQLYLIHEKLGQLAERMKE 519

Query: 595 AGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHS 654
            G+VPD   VL  + D+  K   L  HSE+LAIAFGLI+      +RI KNLRVC DCH+
Sbjct: 520 MGYVPDLDFVLHDV-DETMKVQMLMRHSEKLAIAFGLISTAHGMTLRIFKNLRVCGDCHN 578

Query: 655 VTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
             K++S I +REII+RD +RFHHF+ G CSC D+W
Sbjct: 579 AAKVISMIEDREIILRDTTRFHHFRGGHCSCDDYW 613



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 124/266 (46%), Gaps = 53/266 (19%)

Query: 57  SRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL-D 115
           + ++S Y+D  I N+  A   F+  +   +LV +N ++  YV N  + +AL LF  ++ +
Sbjct: 178 TAMVSGYMD--IGNVVKAIKYFE-AMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVRE 234

Query: 116 RFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDL 175
             + P+  TL  V+ G + L A+  GKQIH    KL    +  V +SLVSMY K G++  
Sbjct: 235 ANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLLLSRNLTVGTSLVSMYCKCGDLSS 294

Query: 176 GRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD------------------- 216
              +F  M  +D+V+WN +I GY + G+ + A+ LF+ M D                   
Sbjct: 295 ACILFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVVVLTACIH 354

Query: 217 --------------RDLFS-------WTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNA 255
                         ++L+        ++C+VD   + GK+E A +    MP      +  
Sbjct: 355 TGLCDFGIQCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDFIRSMP------FEP 408

Query: 256 MINGYMKAGDVDSACELFDDMEIRDL 281
             + Y   G + +AC ++ ++E  +L
Sbjct: 409 HPSAY---GTLLAACRVYKNLEFAEL 431


>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial [Vitis vinifera]
          Length = 875

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 249/667 (37%), Positives = 377/667 (56%), Gaps = 27/667 (4%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRI---LQHPSLVLYNLLI 94
           + +H   V+  +  ++ +++ L+ +Y    + +L+ A  +F+ +   +  P    +  +I
Sbjct: 221 RSVHGYVVRREIESNASLNNSLIVMY--GKLGDLYSAERLFENVPCRMTAP----WTPMI 274

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
            CY  +    EAL +F  + +  + P+  T+  V+   ARLG +KEG+ +HG V +    
Sbjct: 275 SCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIRRAMD 334

Query: 155 FD-KFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDE 213
            +  F+  +L+ +YA  G +    +VF+ + +K ++SWN LI  + + G+ E A+ LF +
Sbjct: 335 PELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQ 394

Query: 214 MPDRDLFS---------WTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAG 264
           M  + L             C    FS+ G  +I   I  +  N N    NA+I+ Y K G
Sbjct: 395 MQTQGLMPDSYSLASSLSACGTISFSQLG-AQIHGYII-KTGNFNDFVQNALIDMYAKCG 452

Query: 265 DVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS 324
            V SA ++F+ ++ + L+TWNSMI G+  NG  +EA+ L + M +  V  +  T +S + 
Sbjct: 453 FVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQ 512

Query: 325 AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGH 384
           A + L  L KG+W+H  ++  G   D  L T L  MYSKCG ++ A  VF  +S++ +  
Sbjct: 513 ACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVS 572

Query: 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMI 444
           W+ MI G GMHG     + LFN+M   G+KP  ITF+ +L+ACSHAG V +G+ YFN M 
Sbjct: 573 WSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKLYFNSM- 631

Query: 445 NDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIG 504
           +++G+EP  +H+ C+VD+L R G L  A   I S+P   N  IW +LL+G R H   DI 
Sbjct: 632 SEFGVEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALLNGCRIHKRIDII 691

Query: 505 EYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGV 564
           +    NL+ V     G Y +LSNIYA  G WDK  +VR MMK +G RK PG S+IE    
Sbjct: 692 KSIEKNLLDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGLRKVPGYSTIEIDKK 751

Query: 565 LHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGH--VPDTTQVLLCIEDQKEKEAELENHS 622
           ++ F  GD SH QT +I+  L   R+ + A  +   PD + V      +  KE  + +HS
Sbjct: 752 IYRFGPGDTSHSQTKDIYRFLENFRSLVHAQVYDSEPDNSIVG---TSKFNKENNVVSHS 808

Query: 623 ERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGS 682
           E+LAIAFG+IN +  + +RI KNLRVC DCHS  K+ S I  REII+RD +RFH F+NGS
Sbjct: 809 EKLAIAFGIINTRPGTTLRISKNLRVCRDCHSFAKIASKITGREIIMRDLNRFHCFRNGS 868

Query: 683 CSCKDFW 689
           CSC D+W
Sbjct: 869 CSCNDYW 875



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 128/488 (26%), Positives = 233/488 (47%), Gaps = 18/488 (3%)

Query: 23  LHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRIL 82
           L+  + +  +T     QLHA    T L  H   S++L+  Y    I     ++ +FD   
Sbjct: 3   LYMPLFRRCATSTTLTQLHAHLFITGLHRHPPASTKLIESYA--QIGIFESSKRVFD-TF 59

Query: 83  QHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL--DRFLLPDNFTLPCVIKGAARLGAIKE 140
             P   ++ +LIKCYV+     EA++L+ +++  D+  +  NF  P V+K  +  G +  
Sbjct: 60  PKPDSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQI-SNFVFPSVLKACSGFGDLSV 118

Query: 141 GKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVK 200
           G ++HG V K GF  D  V +SL+ MY +   +D   + FD M  +D+V+W+ ++  +V+
Sbjct: 119 GGKVHGRVIKCGFESDAVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQ 178

Query: 201 KGEVEVAMKLFDEM----PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS---- 252
            G+    + +F +M     + D  +   + +  S+ G + + R +   +  R + S    
Sbjct: 179 NGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNASL 238

Query: 253 WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDV 312
            N++I  Y K GD+ SA  LF+++  R    W  MI+ Y  +G F EAL +   M    +
Sbjct: 239 NNSLIVMYGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKM 298

Query: 313 LPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVD-GVLGTLLIQMYSKCGSIESAL 371
            PN  T+V  L A A L  + +GR +H ++++     +   LG  L+++Y+  G++    
Sbjct: 299 EPNQVTMVGVLCACARLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCH 358

Query: 372 TVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAG 431
            VF  I +K +  W  +I     +G   +AL LF +M   G+ P + +    L+AC    
Sbjct: 359 KVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTIS 418

Query: 432 LVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSL 491
               G +    +I        +++   L+D+  + G++  A    E +  + + V W S+
Sbjct: 419 FSQLGAQIHGYIIKTGNFNDFVQN--ALIDMYAKCGFVHSANKMFEKIKEK-SLVTWNSM 475

Query: 492 LSGARNHG 499
           + G   +G
Sbjct: 476 ICGFSQNG 483



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 103/370 (27%), Positives = 175/370 (47%), Gaps = 12/370 (3%)

Query: 143 QIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKG 202
           Q+H  +F  G        + L+  YA+ G  +  +RVFD     D   W  LI  YV  G
Sbjct: 19  QLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGG 78

Query: 203 EVEVAMKLFDEMPDRDL-----FSWTCLVDGFSKCGKVEIAREIFYRMPN----RNLVSW 253
             E A+ L+ EM  +D      F +  ++   S  G + +  ++  R+       + V  
Sbjct: 79  FFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKVHGRVIKCGFESDAVVE 138

Query: 254 NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL 313
            +++  Y +   +D AC+ FD M IRD++ W+S++  +  NG+  E L++   M+   V 
Sbjct: 139 TSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEAVE 198

Query: 314 PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTV 373
           P+  T++S   A + L  L  GR +H Y+V+     +  L   LI MY K G + SA  +
Sbjct: 199 PDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNASLNNSLIVMYGKLGDLYSAERL 258

Query: 374 FRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLV 433
           F  +  +    WT MI      G   +AL++F KM    M+P  +T +GVL AC+  G V
Sbjct: 259 FENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRV 318

Query: 434 NDGRRYFNMMINDYGIEPTIEHYG-CLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLL 492
            +GR     +I    ++P ++  G  L+++   TG L +     E++  +   + W +L+
Sbjct: 319 KEGRSVHGFVIRR-AMDPELDFLGPALMELYADTGNLRDCHKVFETIKEK-TILSWNTLI 376

Query: 493 SGARNHGNKD 502
           S    +G  +
Sbjct: 377 SIFTRNGQPE 386


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 245/660 (37%), Positives = 374/660 (56%), Gaps = 12/660 (1%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +Q+HA+ V+         ++ L+ +Y+   +  +  A  IF++ +    +V +N LI   
Sbjct: 222 RQVHAMVVRMGYDKDVFTANALVDMYMK--MGRVDIASVIFEK-MPDSDVVSWNALISGC 278

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
           V N   H A+ L   +    L+P+ FTL  ++K  +  GA   G+QIHG + K     D 
Sbjct: 279 VLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDD 338

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
           ++   LV MYAK   +D  R+VFD M  +DL+  N LI G    G  + A+ LF E+   
Sbjct: 339 YIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKE 398

Query: 218 DL-FSWTCLVDGFSKCGKVEIA---REIFYRMPNRNLV----SWNAMINGYMKAGDVDSA 269
            L  + T L         +E A   R++         +      N +I+ Y K   +  A
Sbjct: 399 GLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDA 458

Query: 270 CELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGL 329
             +F++    D+I   SMI           A++L   ML   + P+   L S L+A A L
Sbjct: 459 NRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASL 518

Query: 330 AVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMI 389
           +   +G+ +H++++K  F+ D   G  L+  Y+KCGSIE A   F ++ ++ V  W+AMI
Sbjct: 519 SAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMI 578

Query: 390 VGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGI 449
            GL  HG   +AL+LF +M   G+ P  IT   VL AC+HAGLV++ +RYFN M   +GI
Sbjct: 579 GGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGI 638

Query: 450 EPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAAN 509
           + T EHY C++D+L R G L++A   + SMP + N  IW +LL  +R H + ++G+ AA 
Sbjct: 639 DRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASRVHKDPELGKLAAE 698

Query: 510 NLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFV 569
            L  + P+  G +V+L+N YA+AG W++V++VR++MK    +K+P  S IE +  +H F+
Sbjct: 699 KLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEVKDKVHTFI 758

Query: 570 VGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAF 629
           VGDKSHP T EI++KL E+ + +  AG VP+   V L   D+ EKE  L +HSERLA+AF
Sbjct: 759 VGDKSHPMTKEIYAKLVELGDLMSKAGFVPN-VDVDLHDLDRSEKELLLSHHSERLAVAF 817

Query: 630 GLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            L++    +PIR+ KNLR+C DCH   K +S I +REII+RD +RFHHF++G+CSC D+W
Sbjct: 818 ALLSTPPGAPIRVKKNLRICRDCHVAFKFISKIVSREIIIRDINRFHHFRDGTCSCGDYW 877



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 135/482 (28%), Positives = 227/482 (47%), Gaps = 12/482 (2%)

Query: 27  ILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPS 86
           +LK     +   Q+HA+++ T       +++ L+++Y       +  AR +F+      +
Sbjct: 109 VLKCVPDARLGAQVHAMAMATGFGSDVFVANALVAMY--GGFGFMDDARRVFNEADSERN 166

Query: 87  LVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHG 146
            V +N L+  YV N +  +A+ +F +++   + P  F   CV+        I+ G+Q+H 
Sbjct: 167 AVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHA 226

Query: 147 LVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEV 206
           +V ++G+  D F  ++LV MY K G +D+   +F+ M D D+VSWN LI G V  G    
Sbjct: 227 MVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHR 286

Query: 207 AMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWN----AMIN 258
           A++L  +M    L    F+ + ++   S  G  ++ R+I   M   N  S +     +++
Sbjct: 287 AIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVD 346

Query: 259 GYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDAT 318
            Y K   +D A ++FD M  RDLI  N++I+G    GR  EAL L   +    +  N  T
Sbjct: 347 MYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTT 406

Query: 319 LVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS 378
           L + L + A L   +  R +H+  VK GF+ D  +   LI  Y KC  +  A  VF   S
Sbjct: 407 LAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECS 466

Query: 379 KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR 438
              +   T+MI  L        A+ LF +M R G++P       +LNAC+       G++
Sbjct: 467 SGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQ 526

Query: 439 YFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNH 498
               +I    +         LV    + G +E+A+    S+P R   V W +++ G   H
Sbjct: 527 VHAHLIKRQFMSDAFAG-NALVYTYAKCGSIEDAELAFSSLPER-GVVSWSAMIGGLAQH 584

Query: 499 GN 500
           G+
Sbjct: 585 GH 586



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 118/364 (32%), Positives = 191/364 (52%), Gaps = 17/364 (4%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGA- 132
           AR +FD I   P  V ++ L+  Y  N     A+  F  +    +  + F LP V+K   
Sbjct: 56  ARRVFDEI-PDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVP 114

Query: 133 -ARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD-DKDLVS 190
            ARLGA     Q+H +    GFG D FV ++LV+MY  FG +D  RRVF+  D +++ VS
Sbjct: 115 DARLGA-----QVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVS 169

Query: 191 WNCLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREI---FY 243
           WN L+  YVK  +   A+++F EM    +    F ++C+V+  +    +E  R++     
Sbjct: 170 WNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVV 229

Query: 244 RMP-NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALE 302
           RM  ++++ + NA+++ YMK G VD A  +F+ M   D+++WN++I+G  LNG    A+E
Sbjct: 230 RMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIE 289

Query: 303 LLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYS 362
           LL  M    ++PN  TL S L A +G    + GR +H +++K     D  +G  L+ MY+
Sbjct: 290 LLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYA 349

Query: 363 KCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIG 422
           K   ++ A  VF  +  + +    A+I G    G   +AL LF ++ + G+     T   
Sbjct: 350 KNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAA 409

Query: 423 VLNA 426
           VL +
Sbjct: 410 VLKS 413



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 127/264 (48%), Gaps = 13/264 (4%)

Query: 37  TQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKC 96
           T+Q+HAL+VK   I+ + + + L+  Y     + L  A  +F+       ++    +I  
Sbjct: 423 TRQVHALAVKIGFIFDAHVVNGLIDSYWK--CSCLSDANRVFEEC-SSGDIIACTSMITA 479

Query: 97  YVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFD 156
                    A+ LF ++L + L PD F L  ++   A L A ++GKQ+H  + K  F  D
Sbjct: 480 LSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSD 539

Query: 157 KFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD 216
            F  ++LV  YAK G I+     F ++ ++ +VSW+ +I G  + G  + A++LF  M D
Sbjct: 540 AFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVD 599

Query: 217 RDL----FSWTCLVDGFSKCGKVEIAREIFYRMP-----NRNLVSWNAMINGYMKAGDVD 267
             +     + T ++   +  G V+ A+  F  M      +R    ++ MI+   +AG +D
Sbjct: 600 EGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLD 659

Query: 268 SACELFDDMEIR-DLITWNSMIAG 290
            A EL + M  + +   W +++  
Sbjct: 660 DAMELVNSMPFQANASIWGALLGA 683



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 109/242 (45%), Gaps = 6/242 (2%)

Query: 254 NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL 313
           N +I+ Y K      A  +FD++     ++W+S++  Y  NG    A++    M    V 
Sbjct: 41  NHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVC 100

Query: 314 PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTV 373
            N+  L   L  V    +   G  +H+  +  GF  D  +   L+ MY   G ++ A  V
Sbjct: 101 CNEFALPVVLKCVPDARL---GAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRV 157

Query: 374 F-RAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGL 432
           F  A S++    W  ++     +     A+ +F +M   G++PT   F  V+NAC+ +  
Sbjct: 158 FNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRN 217

Query: 433 VNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLL 492
           +  GR+   M++   G +  +     LVD+  + G ++ A    E MP   + V W +L+
Sbjct: 218 IEAGRQVHAMVVR-MGYDKDVFTANALVDMYMKMGRVDIASVIFEKMP-DSDVVSWNALI 275

Query: 493 SG 494
           SG
Sbjct: 276 SG 277


>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
 gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 595

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 227/571 (39%), Positives = 344/571 (60%), Gaps = 18/571 (3%)

Query: 135 LGAIKEGKQIHGLVFKLGFGFD-----KFVLSSLVSMYAKFGEIDLGRRVFDAMDDK-DL 188
           + +I + +QIH    + G         K ++  LVS+ +    +    +VF  ++   ++
Sbjct: 27  VSSITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSP-PPMSYAHKVFSKIEKPINV 85

Query: 189 VSWNCLIDGYVKKGEVEVAMKLFDEMP-----DRDLFSWTCLVDGFSKCGKVEIAREIFY 243
             WN LI GY + G    A  L+ EM      + D  ++  L+   +    V +   I  
Sbjct: 86  FIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHS 145

Query: 244 RMPNRNLVSW----NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFME 299
            +      S     N++++ Y   GDV SA ++FD M  +DL+ WNS+I G+  NG+  E
Sbjct: 146 VVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEE 205

Query: 300 ALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQ 359
           AL L   M    + P+  T+VS LSA A +  L  G+ +H Y++K G   +     +L+ 
Sbjct: 206 ALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLD 265

Query: 360 MYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKM-CRMGMKPTAI 418
           +Y++CG +E A T+F  +  K    WT++IVGL ++G   +A++LF  M    G+ P  I
Sbjct: 266 LYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEI 325

Query: 419 TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIES 478
           TF+G+L ACSH G+V +G  YF  M  +Y IEP IEH+GC+VD+L R G +++A   I+S
Sbjct: 326 TFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKS 385

Query: 479 MPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKV 538
           MPM+PN VIW +LL     HG+ D+ E+A   ++++ P+  G YV+LSN+YA+  +W  V
Sbjct: 386 MPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDV 445

Query: 539 SEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHV 598
            ++R+ M + G +K PG S +E    +HEF++GDKSHPQ+D I++KL EM  +L++ G+V
Sbjct: 446 QKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYV 505

Query: 599 PDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKL 658
           P  + V + +E++ EKE  +  HSE++AIAF LI+   RSPI +VKNLRVC DCH   KL
Sbjct: 506 PQISNVYVDVEEE-EKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKL 564

Query: 659 LSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           +S +YNREI+VRD SRFHHFKNGSCSC+D+W
Sbjct: 565 VSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 110/417 (26%), Positives = 199/417 (47%), Gaps = 55/417 (13%)

Query: 32  STHKETQQLHALSVKTNL-IYHSGISSRLLSLYVD-PHINNLHYARSIFDRILQHPSLVL 89
           S+  + +Q+HA S++  + I  + +   L+   V  P    + YA  +F +I +  ++ +
Sbjct: 28  SSITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVFI 87

Query: 90  YNLLIKCYVFNQRSHEALTLFCDL-LDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLV 148
           +N LI+ Y     S  A +L+ ++ +   + PD  T P +IK    +  ++ G+ IH +V
Sbjct: 88  WNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVV 147

Query: 149 FKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAM 208
            + GFG   +V +SL+ +YA  G++    +VFD M +KDLV+WN +I+G+ + G+ E A+
Sbjct: 148 IRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEAL 207

Query: 209 KLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREIFYRMP----NRNLVSWNAMINGY 260
            L+ EM  +    D F+   L+   +K G + + + +   M      RNL S N +++ Y
Sbjct: 208 ALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLY 267

Query: 261 MKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGD-VLPNDATL 319
            + G V+ A  LFD+M  ++ ++W S+I G  +NG   EA+EL + M   + +LP + T 
Sbjct: 268 ARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITF 327

Query: 320 VSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK 379
           V  L A                                    S CG ++     FR + +
Sbjct: 328 VGILYAC-----------------------------------SHCGMVKEGFEYFRRMRE 352

Query: 380 K-----KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAG 431
           +     ++ H+  M+  L   G   +A +       M M+P  + +  +L AC+  G
Sbjct: 353 EYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKS---MPMQPNVVIWRTLLGACTVHG 406


>gi|108863919|gb|ABG22332.1| vegetative storage protein, putative [Oryza sativa Japonica Group]
          Length = 645

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 241/582 (41%), Positives = 340/582 (58%), Gaps = 16/582 (2%)

Query: 120 PDNFTLPCVIKGAARLG-AIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRR 178
           P + T+P  +K A+RL   ++ G+Q+H    KL    +  VL+SL+S+YAK G +   +R
Sbjct: 68  PSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQR 127

Query: 179 VFDAMDDKDLVSWNCLIDGYVKKGE----VEVAMKLFDEMPDRDLFSWTCLVDGFSKCGK 234
           VFD M     V W  LI  Y+  G+    V VA   F      D F+    V   + C +
Sbjct: 128 VFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFT---AVRVLTACAR 184

Query: 235 VE--IAREIFYRMPNRNLVSWN-----AMINGYMKAGDVDSACELFDDMEIRDLITWNSM 287
           +      E  +R   +  V+ +     A ++ Y+K G++  A E+FD M  +D + W +M
Sbjct: 185 IADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAM 244

Query: 288 IAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGF 347
           + GY  NG   EAL+L   M    + P+   +  ALSA   L  L+ GR     +  + F
Sbjct: 245 VGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEF 304

Query: 348 VVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNK 407
           + + VLGT LI MY+KCGS   A  VF+ + KK +  W AMI+GLGM G    A  L  +
Sbjct: 305 LDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQ 364

Query: 408 MCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTG 467
           M + G+K    TFIG+L +C+H GL+ DGRRYF+ M   Y I P IEHYGC+VD+L R G
Sbjct: 365 MEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAG 424

Query: 468 YLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSN 527
            L+EA   ++ MPM  N VI  +LL G + H N ++ E+    LI + P   G YV+LSN
Sbjct: 425 LLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSN 484

Query: 528 IYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSE 587
           IY+  G+W+  +++R  MK +G  K P  S +E  G +HEF VGDKSHP +D+I+ KL E
Sbjct: 485 IYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDE 544

Query: 588 MRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLR 647
           +  ++K  G+ P T  V+  +ED+ EKE  L +HSE+LAIAF L+       IR+ KNLR
Sbjct: 545 LGLEMKTMGYEPTTEVVMFDVEDE-EKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLR 603

Query: 648 VCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           VC+DCH+  KL+S I +REIIVRDN+RFH F++GSCSC D+W
Sbjct: 604 VCSDCHTAIKLVSRITHREIIVRDNNRFHCFRDGSCSCNDYW 645



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 101/343 (29%), Positives = 158/343 (46%), Gaps = 22/343 (6%)

Query: 12  IHALQQH--LPSRLHWNI---LKFSS----THKETQQLHALSVKTNLIYHSGISSRLLSL 62
           +HAL+ H  LP+  H  I   LK +S      +  +QLHA S+K     +  + + LLSL
Sbjct: 56  LHALRVHCLLPNPSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSL 115

Query: 63  YVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDN 122
           Y    +  LH A+ +FD  + HPS V +  LI  Y+      EA+ +  +     + PD+
Sbjct: 116 YAKCGL--LHRAQRVFDE-MPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDS 172

Query: 123 FTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDA 182
           FT   V+   AR+  +  G+ +     + G     FV ++ V +Y K GE+   R VFD 
Sbjct: 173 FTAVRVLTACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDK 232

Query: 183 MDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIA 238
           M  KD V+W  ++ GY   G    A+ LF  M       D ++    +   ++ G +++ 
Sbjct: 233 MRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLG 292

Query: 239 REIFYRMPN-----RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYEL 293
           R+   RM +      N V   A+I+ Y K G    A  +F  M  +D+I WN+MI G  +
Sbjct: 293 RQAI-RMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGM 351

Query: 294 NGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGR 336
            G    A  L+  M    V  ND T +  L +     ++  GR
Sbjct: 352 TGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGR 394


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 245/660 (37%), Positives = 374/660 (56%), Gaps = 12/660 (1%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +Q+HA+ V+         ++ L+ +Y+   +  +  A  IF++ +    +V +N LI   
Sbjct: 222 RQVHAMVVRMGYDKDVFTANALVDMYMK--MGRVDIASVIFEK-MPDSDVVSWNALISGC 278

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
           V N   H A+ L   +    L+P+ FTL  ++K  +  GA   G+QIHG + K     D 
Sbjct: 279 VLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDD 338

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
           ++   LV MYAK   +D  R+VFD M  +DL+  N LI G    G  + A+ LF E+   
Sbjct: 339 YIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKE 398

Query: 218 DL-FSWTCLVDGFSKCGKVEIA---REIFYRMPNRNLV----SWNAMINGYMKAGDVDSA 269
            L  + T L         +E A   R++         +      N +I+ Y K   +  A
Sbjct: 399 GLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDA 458

Query: 270 CELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGL 329
             +F++    D+I   SMI           A++L   ML   + P+   L S L+A A L
Sbjct: 459 NRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASL 518

Query: 330 AVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMI 389
           +   +G+ +H++++K  F+ D   G  L+  Y+KCGSIE A   F ++ ++ V  W+AMI
Sbjct: 519 SAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMI 578

Query: 390 VGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGI 449
            GL  HG   +AL+LF +M   G+ P  IT   VL AC+HAGLV++ +RYFN M   +GI
Sbjct: 579 GGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGI 638

Query: 450 EPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAAN 509
           + T EHY C++D+L R G L++A   + SMP + N  IW +LL  +R H + ++G+ AA 
Sbjct: 639 DRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASRVHKDPELGKLAAE 698

Query: 510 NLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFV 569
            L  + P+  G +V+L+N YA+AG W++V++VR++MK    +K+P  S IE +  +H F+
Sbjct: 699 KLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEVKDKVHTFI 758

Query: 570 VGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAF 629
           VGDKSHP T EI++KL E+ + +  AG VP+   V L   D+ EKE  L +HSERLA+AF
Sbjct: 759 VGDKSHPMTKEIYAKLVELGDLMSKAGFVPN-VDVDLHDLDRSEKELLLSHHSERLAVAF 817

Query: 630 GLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            L++    +PIR+ KNLR+C DCH   K +S I +REII+RD +RFHHF++G+CSC D+W
Sbjct: 818 ALLSTPPGAPIRVKKNLRICRDCHVAFKFISKIVSREIIIRDINRFHHFRDGTCSCGDYW 877



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 135/482 (28%), Positives = 227/482 (47%), Gaps = 12/482 (2%)

Query: 27  ILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPS 86
           +LK     +   Q+HA+++ T       +++ L+++Y       +  AR +F+      +
Sbjct: 109 VLKCVPDARLGAQVHAMAMATGFGSDVFVANALVAMY--GGFGFMDDARRVFNEADSERN 166

Query: 87  LVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHG 146
            V +N L+  YV N +  +A+ +F +++   + P  F   CV+        I+ G+Q+H 
Sbjct: 167 AVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHA 226

Query: 147 LVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEV 206
           +V ++G+  D F  ++LV MY K G +D+   +F+ M D D+VSWN LI G V  G    
Sbjct: 227 MVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHR 286

Query: 207 AMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWN----AMIN 258
           A++L  +M    L    F+ + ++   S  G  ++ R+I   M   N  S +     +++
Sbjct: 287 AIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVD 346

Query: 259 GYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDAT 318
            Y K   +D A ++FD M  RDLI  N++I+G    GR  EAL L   +    +  N  T
Sbjct: 347 MYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTT 406

Query: 319 LVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS 378
           L + L + A L   +  R +H+  VK GF+ D  +   LI  Y KC  +  A  VF   S
Sbjct: 407 LAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECS 466

Query: 379 KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR 438
              +   T+MI  L        A+ LF +M R G++P       +LNAC+       G++
Sbjct: 467 SGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQ 526

Query: 439 YFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNH 498
               +I    +         LV    + G +E+A+    S+P R   V W +++ G   H
Sbjct: 527 VHAHLIKRQFMSDAFAG-NALVYTYAKCGSIEDAELAFSSLPER-GVVSWSAMIGGLAQH 584

Query: 499 GN 500
           G+
Sbjct: 585 GH 586



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 118/364 (32%), Positives = 190/364 (52%), Gaps = 17/364 (4%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGA- 132
           AR  FD I   P  V ++ L+  Y  N     A+  F  +    +  + F LP V+K   
Sbjct: 56  ARRFFDEI-PDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVP 114

Query: 133 -ARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD-DKDLVS 190
            ARLGA     Q+H +    GFG D FV ++LV+MY  FG +D  RRVF+  D +++ VS
Sbjct: 115 DARLGA-----QVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVS 169

Query: 191 WNCLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREI---FY 243
           WN L+  YVK  +   A+++F EM    +    F ++C+V+  +    +E  R++     
Sbjct: 170 WNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVV 229

Query: 244 RMP-NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALE 302
           RM  ++++ + NA+++ YMK G VD A  +F+ M   D+++WN++I+G  LNG    A+E
Sbjct: 230 RMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIE 289

Query: 303 LLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYS 362
           LL  M    ++PN  TL S L A +G    + GR +H +++K     D  +G  L+ MY+
Sbjct: 290 LLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYA 349

Query: 363 KCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIG 422
           K   ++ A  VF  +  + +    A+I G    G   +AL LF ++ + G+     T   
Sbjct: 350 KNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAA 409

Query: 423 VLNA 426
           VL +
Sbjct: 410 VLKS 413



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 127/264 (48%), Gaps = 13/264 (4%)

Query: 37  TQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKC 96
           T+Q+HAL+VK   I+ + + + L+  Y     + L  A  +F+       ++    +I  
Sbjct: 423 TRQVHALAVKIGFIFDAHVVNGLIDSYWK--CSCLSDANRVFEEC-SSGDIIACTSMITA 479

Query: 97  YVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFD 156
                    A+ LF ++L + L PD F L  ++   A L A ++GKQ+H  + K  F  D
Sbjct: 480 LSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSD 539

Query: 157 KFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD 216
            F  ++LV  YAK G I+     F ++ ++ +VSW+ +I G  + G  + A++LF  M D
Sbjct: 540 AFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVD 599

Query: 217 RDL----FSWTCLVDGFSKCGKVEIAREIFYRMP-----NRNLVSWNAMINGYMKAGDVD 267
             +     + T ++   +  G V+ A+  F  M      +R    ++ MI+   +AG +D
Sbjct: 600 EGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLD 659

Query: 268 SACELFDDMEIR-DLITWNSMIAG 290
            A EL + M  + +   W +++  
Sbjct: 660 DAMELVNSMPFQANASIWGALLGA 683



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 108/242 (44%), Gaps = 6/242 (2%)

Query: 254 NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL 313
           N +I+ Y K      A   FD++     ++W+S++  Y  NG    A++    M    V 
Sbjct: 41  NHLISFYSKCRRPCCARRFFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVC 100

Query: 314 PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTV 373
            N+  L   L  V    +   G  +H+  +  GF  D  +   L+ MY   G ++ A  V
Sbjct: 101 CNEFALPVVLKCVPDARL---GAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRV 157

Query: 374 F-RAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGL 432
           F  A S++    W  ++     +     A+ +F +M   G++PT   F  V+NAC+ +  
Sbjct: 158 FNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRN 217

Query: 433 VNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLL 492
           +  GR+   M++   G +  +     LVD+  + G ++ A    E MP   + V W +L+
Sbjct: 218 IEAGRQVHAMVVR-MGYDKDVFTANALVDMYMKMGRVDIASVIFEKMP-DSDVVSWNALI 275

Query: 493 SG 494
           SG
Sbjct: 276 SG 277


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 249/724 (34%), Positives = 390/724 (53%), Gaps = 78/724 (10%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQH--PSLVLYNLLIK 95
           + LH L        +  + + L+++Y      +L  A  +FD I +     ++ +N ++ 
Sbjct: 169 RALHGLICCNGFESNVFVCNALVAMY--SRCGSLEDASLVFDEITRKGIDDVISWNSIVA 226

Query: 96  CYVFNQRSHEALTLFCDLL---------DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHG 146
            +V       AL LF ++          +R    D  ++  ++   A L A+ + K+IH 
Sbjct: 227 AHVKGSNPRTALELFSEMSMIVHEKATNER---SDIISIVNILPACASLKALPQIKEIHS 283

Query: 147 LVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEV 206
              + G   D FV ++L+  YAK G ++   +VF+ M+ KD+VSWN ++ GY + G    
Sbjct: 284 YAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGA 343

Query: 207 AMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREIFYRM------PNR-------- 248
           A +LF+ M       D+ +W+ ++ G+++ G  + A + F +M      PN         
Sbjct: 344 AFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLS 403

Query: 249 -------------------------------------NLVSWNAMINGYMKAGDVDSACE 271
                                                +L+ +NA+I+ Y K     +A  
Sbjct: 404 ACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARS 463

Query: 272 LFDDMEIRD--LITWNSMIAGYELNGRFMEALELLETMLIGD--VLPNDATLVSALSAVA 327
           +FD +  R+  ++TW  MI GY   G   +AL++   M+     V PN  T+   L A A
Sbjct: 464 IFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACA 523

Query: 328 GLAVLNKGRWMHSYIVKNGFVVDGV--LGTLLIQMYSKCGSIESALTVFRAISKKKVGHW 385
            LA L  G+ +H+Y+ ++      V  +   LI MYSKCG +++A  VF ++ K+    W
Sbjct: 524 HLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSW 583

Query: 386 TAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN 445
           T+M+ G GMHG   +ALD+F+KM + G  P  I+F+ +L ACSH+G+V+ G  YF++M  
Sbjct: 584 TSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLNYFDIMRR 643

Query: 446 DYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGE 505
           DY +  + EHY C++D+L R G L++A  TI+ MPM P+ VIW++LLS  R H N ++ E
Sbjct: 644 DYDVVASAEHYACVIDLLARCGRLDKAWKTIQEMPMEPSAVIWVALLSACRVHSNVELAE 703

Query: 506 YAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVL 565
           YA N L+ +  +  G Y ++SNIYA A +W  V+ +R++MKK G +K PG S ++ +   
Sbjct: 704 YALNKLVNMKAENDGSYTLISNIYANARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGT 763

Query: 566 HEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERL 625
             F VGD+SHP + EI+S L  +  ++K  G+VP+T   L  ++D+ EK   L  HSE+L
Sbjct: 764 ASFFVGDRSHPLSPEIYSLLERLIGRIKVMGYVPETNFALHDVDDE-EKNNLLSEHSEKL 822

Query: 626 AIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSC 685
           A+A+GL+      PIRI KNLRVC DCHS    +S I + EIIVRD+SRFHHFKNGSCSC
Sbjct: 823 ALAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIIVRDSSRFHHFKNGSCSC 882

Query: 686 KDFW 689
             +W
Sbjct: 883 GGYW 886



 Score =  229 bits (585), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 149/495 (30%), Positives = 250/495 (50%), Gaps = 71/495 (14%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           A S+ +R+   P+ V +NLL++ ++       A+ + C +L     PD+FTLP  +K   
Sbjct: 102 ALSVLERVTPSPA-VWWNLLVREHIKEGHLDRAIGVSCRMLRAGTKPDHFTLPYALKACG 160

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK---DLVS 190
            L +   G+ +HGL+   GF  + FV ++LV+MY++ G ++    VFD +  K   D++S
Sbjct: 161 ELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLVFDEITRKGIDDVIS 220

Query: 191 WNCLIDGYVKKGEVEVAMKLFDEM-------------------------------PD--- 216
           WN ++  +VK      A++LF EM                               P    
Sbjct: 221 WNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNILPACASLKALPQIKE 280

Query: 217 -----------RDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGD 265
                       D F    L+D ++KCG +  A ++F  M  +++VSWNAM+ GY ++G+
Sbjct: 281 IHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGN 340

Query: 266 VDSACELFDDMEIR----DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVS 321
             +A ELF++M       D+ITW+++IAGY   G   EAL+  + M++    PN  T++S
Sbjct: 341 FGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIIS 400

Query: 322 ALSAVAGLAVLNKGRWMHSYIVKNGFV------------VDGVLGTLLIQMYSKCGSIES 369
            LSA A L  L++G  +H+Y +K   +             D ++   LI MYSKC S ++
Sbjct: 401 LLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKA 460

Query: 370 ALTVFRAISKKK--VGHWTAMIVGLGMHGMATQALDLFNKMCR--MGMKPTAITFIGVLN 425
           A ++F +I +++  V  WT MI G   +G +  AL +F++M      + P A T   +L 
Sbjct: 461 ARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILM 520

Query: 426 ACSHAGLVNDGRRYFNMMINDYGIEPTIEHYG-CLVDILCRTGYLEEAKSTIESMPMRPN 484
           AC+H   +  G++    +   +  EP++     CL+D+  + G ++ A++  +SMP R N
Sbjct: 521 ACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKR-N 579

Query: 485 FVIWMSLLSGARNHG 499
            V W S++SG   HG
Sbjct: 580 EVSWTSMMSGYGMHG 594



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 106/439 (24%), Positives = 184/439 (41%), Gaps = 82/439 (18%)

Query: 161 SSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------ 214
           + +V+ Y   G       V + +     V WN L+  ++K+G ++ A+ +   M      
Sbjct: 87  TGVVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAGTK 146

Query: 215 PDRDLFSWTCLVDG--FSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACEL 272
           PD     +     G   S C    +   I       N+   NA++  Y + G ++ A  +
Sbjct: 147 PDHFTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLV 206

Query: 273 FDDME---IRDLITWNSMIAGYELNGRFMEALELLE--TMLIGDVLPND----ATLVSAL 323
           FD++    I D+I+WNS++A +        ALEL    +M++ +   N+     ++V+ L
Sbjct: 207 FDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNIL 266

Query: 324 SAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVG 383
            A A L  L + + +HSY ++NG   D  +   LI  Y+KCGS+  A+ VF  +  K V 
Sbjct: 267 PACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVV 326

Query: 384 HWTAM-----------------------------------IVGLGMHGMATQALDLFNKM 408
            W AM                                   I G    G + +ALD F +M
Sbjct: 327 SWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQM 386

Query: 409 CRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEH------------- 455
              G +P ++T I +L+AC+  G ++ G     M I+ Y ++  +               
Sbjct: 387 ILDGSEPNSVTIISLLSACASLGALSQG-----MEIHAYSLKKCLLSLDNDFGGDGDGED 441

Query: 456 ---YGCLVDILCRTGYLEEAKSTIESMPMRP-NFVIWMSLLSGARNHGNKDIGEYAANNL 511
              Y  L+D+  +    + A+S  +S+P R  N V W  ++ G   +G+       +N+ 
Sbjct: 442 LMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGD-------SNDA 494

Query: 512 IKVAPDTIG-CYVVLSNIY 529
           +K+  + I   Y V  N Y
Sbjct: 495 LKIFSEMISKPYAVAPNAY 513



 Score = 47.0 bits (110), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 64/152 (42%), Gaps = 3/152 (1%)

Query: 345 NGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDL 404
           + +V    LGT ++  Y  CG+ + AL+V   ++      W  ++      G   +A+ +
Sbjct: 77  HSYVSPKSLGTGVVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGV 136

Query: 405 FNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILC 464
             +M R G KP   T    L AC        GR    ++  + G E  +     LV +  
Sbjct: 137 SCRMLRAGTKPDHFTLPYALKACGELPSYCCGRALHGLICCN-GFESNVFVCNALVAMYS 195

Query: 465 RTGYLEEAKSTIESMPMR--PNFVIWMSLLSG 494
           R G LE+A    + +  +   + + W S+++ 
Sbjct: 196 RCGSLEDASLVFDEITRKGIDDVISWNSIVAA 227


>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
 gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
          Length = 654

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 239/657 (36%), Positives = 366/657 (55%), Gaps = 66/657 (10%)

Query: 36  ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIK 95
           + +Q+HA  +   L     + ++L+      +I    Y  SIF+++  +P+  LYN LI+
Sbjct: 61  QIKQVHARILLNGLDQSCYVLAKLIRTLTKLNIPVDPYPLSIFNQV-NYPNPFLYNALIR 119

Query: 96  CYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF 155
            Y+  +R  E+   +  +    ++P +FT   + K       +  G+QIHG    +G   
Sbjct: 120 GYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMDVGLGRQIHGQTILVG--- 176

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP 215
                         FGE              DL   N +ID Y+K               
Sbjct: 177 -------------GFGE--------------DLHVGNSMIDMYIK--------------- 194

Query: 216 DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDD 275
                           CG +E  R++F  MPNR+++SW  +I+ Y+K+G+++SA ELFD 
Sbjct: 195 ----------------CGFLECGRKVFDEMPNRDVISWTELISAYVKSGNMESAGELFDG 238

Query: 276 MEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKG 335
           + ++D++ W  M++G+  N +  EA+   E M    V  ++ TL+  +SA A L      
Sbjct: 239 LPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEITLIGVISACAQLGAAKYA 298

Query: 336 RWMHSYIVKNGFVVDG--VLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLG 393
            W+     K+ F      V+G+ LI MYSKCGS+  A  VF+ + ++ V  +++MI+G  
Sbjct: 299 DWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGMKERNVYSYSSMILGFA 358

Query: 394 MHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTI 453
           MHG    A+ LF++M +  +KP  +TFIGVL ACSHAG+V  G + F +M   YGI+P+ 
Sbjct: 359 MHGRVHDAMKLFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQGWQIFELMEKCYGIKPSA 418

Query: 454 EHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIK 513
           +HY C+VD+L R G L+EA   +++MP+ P+  +W +LL   R H + DI   AAN+L +
Sbjct: 419 DHYTCMVDLLGRAGRLQEAHELVKTMPIEPHGGVWGALLGACRIHKSPDIAAIAANHLFE 478

Query: 514 VAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIE-HRGVLHEFVVGD 572
           + P  IG Y++L+NIYA+ G+W+ VS VR++M+ RG RK+P  S IE  +G++HEF  GD
Sbjct: 479 LEPYCIGNYILLANIYASCGRWNDVSTVRKLMRTRGLRKNPAFSWIESEKGMVHEFFSGD 538

Query: 573 KSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLI 632
            +HP++ EI   L ++ ++L+A G+ P  + V   + D+ +K   L  HSE+LA+AFGLI
Sbjct: 539 MTHPRSGEIKQALEDLLDRLEAKGYQPHLSSVSYDVNDE-DKRRILMTHSEKLALAFGLI 597

Query: 633 NVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           +    S IRIVKNLR+C DCHSV    S I  REIIVRD  RFHHF +G CSC +FW
Sbjct: 598 STIPGSKIRIVKNLRICEDCHSVICGASQITGREIIVRDIMRFHHFHDGICSCGNFW 654


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 255/726 (35%), Positives = 391/726 (53%), Gaps = 75/726 (10%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           ++T+++H   +K        + + L+S Y     + + YAR +FD++ Q  +L  +N L+
Sbjct: 26  RDTKKIHCHIIKAFRNPEIFLLNNLVSAYAK--FDRITYARRVFDQMPQR-NLYSWNTLL 82

Query: 95  KCY-----------VFNQRSHEALTLFCDLLDR-----FLL-------------PDNF-- 123
             Y           VF+      +  +  L+       FLL             P N   
Sbjct: 83  SSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNR 142

Query: 124 -TLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDA 182
             L  ++  A++ G +  G Q+HG V K GF    FV S LV MY+K G +   R+ FD 
Sbjct: 143 IALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDE 202

Query: 183 MDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIF 242
           M +K++V +N LI G ++   +E + +LF +M ++D  SWT ++ GF++ G    A ++F
Sbjct: 203 MPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLF 262

Query: 243 YRMPNRNL---------------------------------------VSWNAMINGYMKA 263
             M   NL                                          +A+++ Y K 
Sbjct: 263 REMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKC 322

Query: 264 GDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSAL 323
             + SA  +F  M  +++++W +M+ GY  NG   EA+++   M    + P+D TL S +
Sbjct: 323 KSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVI 382

Query: 324 SAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVG 383
           S+ A LA L +G   H   + +G +    +   L+ +Y KCGSIE +  +F  +S     
Sbjct: 383 SSCANLASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEV 442

Query: 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMM 443
            WTA++ G    G A + L LF  M   G KP  +TFIGVL+ACS AGLV  G + F  M
Sbjct: 443 SWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQIFESM 502

Query: 444 INDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDI 503
           I ++ I P  +HY C++D+  R G LEEA+  I  MP  P+ + W SLLS  R H N +I
Sbjct: 503 IKEHRIIPIEDHYTCMIDLFSRAGRLEEARKFINKMPFSPDAIGWASLLSSCRFHRNMEI 562

Query: 504 GEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRG 563
           G++AA +L+K+ P     Y++LS+IYAA G+W++V+ +R+ M+ +G RK+PG S I+++ 
Sbjct: 563 GKWAAESLLKLEPHNTASYILLSSIYAAKGKWEEVANLRKGMRDKGLRKEPGCSWIKYKN 622

Query: 564 VLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSE 623
            +H F   D+S+P +D+I+S+L ++  K+   G+VPD   VL  ++D  EK   L +HSE
Sbjct: 623 QVHIFSADDQSNPFSDQIYSELEKLNYKMVQEGYVPDMNSVLHDVDDS-EKIKMLNHHSE 681

Query: 624 RLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSC 683
           +LAIAFGLI +    PIR+VKNLRVC DCH+ TK +S I  REI+VRD +RFH FK+G C
Sbjct: 682 KLAIAFGLIFIPPGLPIRVVKNLRVCGDCHNATKYISKITQREILVRDAARFHLFKDGRC 741

Query: 684 SCKDFW 689
           SC DFW
Sbjct: 742 SCGDFW 747


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 224/574 (39%), Positives = 346/574 (60%), Gaps = 16/574 (2%)

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD 187
           ++K    L  + EGK IH L+    F  D  + ++L+++YAK G++   R++FD M  +D
Sbjct: 21  LLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSRD 80

Query: 188 LVSWNCLIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKCGKVEI--AR 239
           +V+W  LI GY +    + A+ L  EM      P++  F+   L+   S  G  ++   R
Sbjct: 81  VVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQ--FTLASLLKAASGVGSTDVLQGR 138

Query: 240 EI----FYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNG 295
           ++         + N+    A+++ Y +   ++ A  +FD M  ++ ++WN++IAGY   G
Sbjct: 139 QLHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKG 198

Query: 296 RFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGT 355
           +  +A  L   ML  +V P   T  S L A A +  L +G+W+H+ ++K G  +   +G 
Sbjct: 199 QGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAFVGN 258

Query: 356 LLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKP 415
            L+ MY+K GSIE A  VF  ++K+ V  W +M+ G   HG+   AL  F +M R  + P
Sbjct: 259 TLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIAP 318

Query: 416 TAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKST 475
             ITF+ VL ACSHAGL+++GR YF+MM   Y +EP I HY  +VD+L R G+L+ A   
Sbjct: 319 NDITFLCVLTACSHAGLLDEGRHYFDMM-KKYNVEPQISHYVTMVDLLGRAGHLDRAIQF 377

Query: 476 IESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQW 535
           I  MP++P   +W +LL   R H N ++G YAA  + ++     G +V+L NIYA AG+W
Sbjct: 378 ISEMPIKPTAAVWGALLGACRMHKNMELGGYAAECIFELDSHYPGTHVLLYNIYALAGRW 437

Query: 536 DKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAA 595
           +  ++VR+MMK+ G +K+P  S +E    +H FV  D +HPQ  EIH+   ++ +K+K  
Sbjct: 438 NDAAKVRKMMKESGVKKEPACSWVEMENEVHVFVADDDAHPQRREIHNMWEQISDKIKEI 497

Query: 596 GHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSV 655
           G+VPD++ VLLC+ DQ+E+EA+L+ HSE+LA+AF L+N    S IRI KN+R+C DCHS 
Sbjct: 498 GYVPDSSHVLLCM-DQQEREAKLQYHSEKLALAFALLNTPPGSTIRIKKNIRICGDCHSA 556

Query: 656 TKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            K +S +  REIIVRD +RFHHF +G+CSC+D+W
Sbjct: 557 FKFVSKLVEREIIVRDTNRFHHFCDGACSCEDYW 590



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 89/332 (26%), Positives = 160/332 (48%), Gaps = 30/332 (9%)

Query: 36  ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIK 95
           + +QLH L ++     +  +S  +L +Y   H  +L  A+ IFD ++   + V +N LI 
Sbjct: 136 QGRQLHGLCLRYGYDSNVYVSCAILDMYARCH--HLEEAQLIFD-VMVSKNEVSWNALIA 192

Query: 96  CYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF 155
            Y    +  +A  LF ++L   + P +FT   V+   A +G++++GK +H L+ K G   
Sbjct: 193 GYARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKL 252

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP 215
             FV ++L+ MYAK G I+  ++VFD +  +D+VSWN ++ GY + G  +VA++ F+EM 
Sbjct: 253 VAFVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEML 312

Query: 216 DRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNRN----LVSWNAMINGYMKAGDVD 267
              +     ++ C++   S  G ++  R  F  M   N    +  +  M++   +AG +D
Sbjct: 313 RTRIAPNDITFLCVLTACSHAGLLDEGRHYFDMMKKYNVEPQISHYVTMVDLLGRAGHLD 372

Query: 268 SACELFDDMEIRDLIT-WNSMIAG------YELNGRFMEALELLETMLIGDVLPNDATLV 320
            A +   +M I+     W +++         EL G   E +  L++       P    L+
Sbjct: 373 RAIQFISEMPIKPTAAVWGALLGACRMHKNMELGGYAAECIFELDSH-----YPGTHVLL 427

Query: 321 SALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV 352
             + A+A       GRW  +  V+      GV
Sbjct: 428 YNIYALA-------GRWNDAAKVRKMMKESGV 452


>gi|414883627|tpg|DAA59641.1| TPA: hypothetical protein ZEAMMB73_113196 [Zea mays]
          Length = 637

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 212/473 (44%), Positives = 309/473 (65%), Gaps = 2/473 (0%)

Query: 218 DLFSWTCLVDGFSKCGKVEIAREIFYRMP-NRNLVSWNAMINGYMKAGDVDSACELFDDM 276
           DL+     +  +  CG V   R++F  +P  R++V+WNA++ GY++AG V  A E+FD M
Sbjct: 166 DLYVRNAQIHFYGVCGDVAAMRKVFDELPIVRDVVTWNAVLAGYVRAGMVGVAREVFDGM 225

Query: 277 EIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGR 336
            +RD ++W+++I GY   G    AL + + M+   V  N+A +V+ALSA A L +L +G+
Sbjct: 226 PVRDEVSWSTVIGGYVKEGEPEVALGVFKNMVAQGVKANEAAIVTALSAAAQLGLLEQGK 285

Query: 337 WMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHG 396
           ++H  + + G  +   LG  LI MYSKCGS+ +A  VF A+ ++ V  W +MI GL  HG
Sbjct: 286 FVHEVVKRVGMTMSVNLGAALIDMYSKCGSVAAAKEVFDAMPRRDVFAWNSMICGLATHG 345

Query: 397 MATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHY 456
           +   A+ LF K    G  PT+ITF+GVLNACS  GLV++GRRYF +M   Y IE  +EHY
Sbjct: 346 LGHDAVQLFEKFVSEGFCPTSITFVGVLNACSRTGLVDEGRRYFKLMAEKYDIESEMEHY 405

Query: 457 GCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAP 516
           GC+VD+L R G ++EA   IE M + P+ V+W ++LS  + HG  D+G    N LI++ P
Sbjct: 406 GCMVDLLSRAGLVQEAVELIEGMRIPPDPVLWGTILSACKRHGLVDLGITVGNKLIELDP 465

Query: 517 DTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHP 576
              G YV+L++IYA A +WD+V +VR++M  RG  K  G S +E  G++H+F+VGD +H 
Sbjct: 466 AHDGYYVLLASIYAKAKKWDEVRKVRKLMSNRGTSKSAGWSLMEAHGIVHKFLVGDMNHK 525

Query: 577 QTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKS 636
            +  I++ L  +  +L  AG+VPD + VL  I D+ EK   ++ HSERLAIA+G I V++
Sbjct: 526 DSARIYNMLCTINRRLAEAGYVPDVSSVLHDIGDE-EKVHAIKVHSERLAIAYGFIVVEA 584

Query: 637 RSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            SPIRIVKNL VC DCH  +K+++ ++ REI+VRD SRFHH K+G CSC D+W
Sbjct: 585 GSPIRIVKNLSVCGDCHEFSKMVTKVFGREIVVRDGSRFHHMKDGKCSCHDYW 637



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 101/383 (26%), Positives = 168/383 (43%), Gaps = 77/383 (20%)

Query: 141 GKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD-DKDLVSWNCLIDGYV 199
           G  +H L  K G   D +V ++ +  Y   G++   R+VFD +   +D+V+WN ++ GYV
Sbjct: 151 GTHVHALAVKAGAAGDLYVRNAQIHFYGVCGDVAAMRKVFDELPIVRDVVTWNAVLAGYV 210

Query: 200 KKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNL--------- 250
           + G V VA ++FD MP RD  SW+ ++ G+ K G+ E+A  +F  M  + +         
Sbjct: 211 RAGMVGVAREVFDGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNMVAQGVKANEAAIVT 270

Query: 251 ---------------------------VSWN---AMINGYMKAGDVDSACELFDDMEIRD 280
                                      +S N   A+I+ Y K G V +A E+FD M  RD
Sbjct: 271 ALSAAAQLGLLEQGKFVHEVVKRVGMTMSVNLGAALIDMYSKCGSVAAAKEVFDAMPRRD 330

Query: 281 LITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHS 340
           +  WNSMI G   +G   +A++L E  +     P   T V  L+A +   ++++GR    
Sbjct: 331 VFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCPTSITFVGVLNACSRTGLVDEGR---R 387

Query: 341 YIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQ 400
           Y              L+ + Y     IES +            H+  M+  L   G+  +
Sbjct: 388 YF------------KLMAEKY----DIESEME-----------HYGCMVDLLSRAGLVQE 420

Query: 401 ALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIE-HYGCL 459
           A++L      M + P  + +  +L+AC   GLV+ G    N +I    ++P  + +Y  L
Sbjct: 421 AVELIEG---MRIPPDPVLWGTILSACKRHGLVDLGITVGNKLIE---LDPAHDGYYVLL 474

Query: 460 VDILCRTGYLEEAKSTIESMPMR 482
             I  +    +E +   + M  R
Sbjct: 475 ASIYAKAKKWDEVRKVRKLMSNR 497



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 115/232 (49%), Gaps = 11/232 (4%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           AR +FD +      V ++ +I  YV       AL +F +++ + +  +   +   +  AA
Sbjct: 218 AREVFDGMPVRDE-VSWSTVIGGYVKEGEPEVALGVFKNMVAQGVKANEAAIVTALSAAA 276

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
           +LG +++GK +H +V ++G      + ++L+ MY+K G +   + VFDAM  +D+ +WN 
Sbjct: 277 QLGLLEQGKFVHEVVKRVGMTMSVNLGAALIDMYSKCGSVAAAKEVFDAMPRRDVFAWNS 336

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNR- 248
           +I G    G    A++LF++           ++  +++  S+ G V+  R  F  M  + 
Sbjct: 337 MICGLATHGLGHDAVQLFEKFVSEGFCPTSITFVGVLNACSRTGLVDEGRRYFKLMAEKY 396

Query: 249 ----NLVSWNAMINGYMKAGDVDSACELFDDMEI-RDLITWNSMIAGYELNG 295
                +  +  M++   +AG V  A EL + M I  D + W ++++  + +G
Sbjct: 397 DIESEMEHYGCMVDLLSRAGLVQEAVELIEGMRIPPDPVLWGTILSACKRHG 448


>gi|222615375|gb|EEE51507.1| hypothetical protein OsJ_32672 [Oryza sativa Japonica Group]
          Length = 1100

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 241/582 (41%), Positives = 340/582 (58%), Gaps = 16/582 (2%)

Query: 120  PDNFTLPCVIKGAARLG-AIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRR 178
            P + T+P  +K A+RL   ++ G+Q+H    KL    +  VL+SL+S+YAK G +   +R
Sbjct: 523  PSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQR 582

Query: 179  VFDAMDDKDLVSWNCLIDGYVKKGE----VEVAMKLFDEMPDRDLFSWTCLVDGFSKCGK 234
            VFD M     V W  LI  Y+  G+    V VA   F      D F+    V   + C +
Sbjct: 583  VFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFT---AVRVLTACAR 639

Query: 235  VE--IAREIFYRMPNRNLVSWN-----AMINGYMKAGDVDSACELFDDMEIRDLITWNSM 287
            +      E  +R   +  V+ +     A ++ Y+K G++  A E+FD M  +D + W +M
Sbjct: 640  IADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAM 699

Query: 288  IAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGF 347
            + GY  NG   EAL+L   M    + P+   +  ALSA   L  L+ GR     +  + F
Sbjct: 700  VGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEF 759

Query: 348  VVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNK 407
            + + VLGT LI MY+KCGS   A  VF+ + KK +  W AMI+GLGM G    A  L  +
Sbjct: 760  LDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQ 819

Query: 408  MCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTG 467
            M + G+K    TFIG+L +C+H GL+ DGRRYF+ M   Y I P IEHYGC+VD+L R G
Sbjct: 820  MEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAG 879

Query: 468  YLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSN 527
             L+EA   ++ MPM  N VI  +LL G + H N ++ E+    LI + P   G YV+LSN
Sbjct: 880  LLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSN 939

Query: 528  IYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSE 587
            IY+  G+W+  +++R  MK +G  K P  S +E  G +HEF VGDKSHP +D+I+ KL E
Sbjct: 940  IYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDE 999

Query: 588  MRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLR 647
            +  ++K  G+ P T  V+  +ED+ EKE  L +HSE+LAIAF L+       IR+ KNLR
Sbjct: 1000 LGLEMKTMGYEPTTEVVMFDVEDE-EKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLR 1058

Query: 648  VCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            VC+DCH+  KL+S I +REIIVRDN+RFH F++GSCSC D+W
Sbjct: 1059 VCSDCHTAIKLVSRITHREIIVRDNNRFHCFRDGSCSCNDYW 1100



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 101/343 (29%), Positives = 158/343 (46%), Gaps = 22/343 (6%)

Query: 12  IHALQQH--LPSRLHWNI---LKFSS----THKETQQLHALSVKTNLIYHSGISSRLLSL 62
           +HAL+ H  LP+  H  I   LK +S      +  +QLHA S+K     +  + + LLSL
Sbjct: 511 LHALRVHCLLPNPSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSL 570

Query: 63  YVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDN 122
           Y    +  LH A+ +FD  + HPS V +  LI  Y+      EA+ +  +     + PD+
Sbjct: 571 YAKCGL--LHRAQRVFDE-MPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDS 627

Query: 123 FTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDA 182
           FT   V+   AR+  +  G+ +     + G     FV ++ V +Y K GE+   R VFD 
Sbjct: 628 FTAVRVLTACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDK 687

Query: 183 MDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIA 238
           M  KD V+W  ++ GY   G    A+ LF  M       D ++    +   ++ G +++ 
Sbjct: 688 MRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLG 747

Query: 239 REIFYRMPN-----RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYEL 293
           R+   RM +      N V   A+I+ Y K G    A  +F  M  +D+I WN+MI G  +
Sbjct: 748 RQAI-RMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGM 806

Query: 294 NGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGR 336
            G    A  L+  M    V  ND T +  L +     ++  GR
Sbjct: 807 TGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGR 849


>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g68930
 gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
 gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 248/688 (36%), Positives = 373/688 (54%), Gaps = 74/688 (10%)

Query: 73  YARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDR-----FLLPDNFTLPC 127
           YAR +FDRI Q P+L  +N L+  Y       E  + F  L DR      +L + ++L  
Sbjct: 59  YARRVFDRIPQ-PNLFSWNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSG 117

Query: 128 VIKGAARL---------------------------GAIKEGKQIHGLVFKLGFGFDKFVL 160
           ++  A +                            G +  GKQIHG V KLGF     V 
Sbjct: 118 LVGAAVKAYNTMMRDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVG 177

Query: 161 SSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLF 220
           S L+ MYA  G I   ++VF  +DD++ V +N L+ G +  G +E A++LF  M ++D  
Sbjct: 178 SPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGM-EKDSV 236

Query: 221 SWTCLVDGFSKCGKVEIAREIFYRMPNRNL------------------------------ 250
           SW  ++ G ++ G  + A E F  M  + L                              
Sbjct: 237 SWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACI 296

Query: 251 ---------VSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEAL 301
                       +A+I+ Y K   +  A  +FD M+ +++++W +M+ GY   GR  EA+
Sbjct: 297 IRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAV 356

Query: 302 ELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMY 361
           ++   M    + P+  TL  A+SA A ++ L +G   H   + +G +    +   L+ +Y
Sbjct: 357 KIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLY 416

Query: 362 SKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFI 421
            KCG I+ +  +F  ++ +    WTAM+      G A + + LF+KM + G+KP  +T  
Sbjct: 417 GKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLT 476

Query: 422 GVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPM 481
           GV++ACS AGLV  G+RYF +M ++YGI P+I HY C++D+  R+G LEEA   I  MP 
Sbjct: 477 GVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPF 536

Query: 482 RPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEV 541
            P+ + W +LLS  RN GN +IG++AA +LI++ P     Y +LS+IYA+ G+WD V+++
Sbjct: 537 PPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQL 596

Query: 542 REMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDT 601
           R  M+++  +K+PG S I+ +G LH F   D+S P  D+I++KL E+ NK+   G+ PDT
Sbjct: 597 RRGMREKNVKKEPGQSWIKWKGKLHSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPDT 656

Query: 602 TQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSG 661
           + V   +E +  K   L  HSERLAIAFGLI V S  PIR+ KNLRVC DCH+ TK +S 
Sbjct: 657 SFVHHDVE-EAVKVKMLNYHSERLAIAFGLIFVPSGQPIRVGKNLRVCVDCHNATKHISS 715

Query: 662 IYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           +  REI+VRD  RFH FK+G+CSC DFW
Sbjct: 716 VTGREILVRDAVRFHRFKDGTCSCGDFW 743



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/322 (27%), Positives = 148/322 (45%), Gaps = 37/322 (11%)

Query: 214 MPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELF 273
           +P  + F +  +V  ++       AR +F R+P  NL SWN ++  Y KAG +      F
Sbjct: 36  LPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKAGLISEMESTF 95

Query: 274 DDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPN--DATLVSALSAVAGLAV 331
           + +  RD +TWN +I GY L+G    A++   TM+  D   N    TL++ L   +    
Sbjct: 96  EKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMM-RDFSANLTRVTLMTMLKLSSSNGH 154

Query: 332 LNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSK---------------------------- 363
           ++ G+ +H  ++K GF    ++G+ L+ MY+                             
Sbjct: 155 VSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGG 214

Query: 364 ---CGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITF 420
              CG IE AL +FR + K  V  W AMI GL  +G+A +A++ F +M   G+K     F
Sbjct: 215 LLACGMIEDALQLFRGMEKDSVS-WAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPF 273

Query: 421 IGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP 480
             VL AC   G +N+G++    +I     +  I     L+D+ C+   L  AK+  + M 
Sbjct: 274 GSVLPACGGLGAINEGKQIHACIIRT-NFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMK 332

Query: 481 MRPNFVIWMSLLSGARNHGNKD 502
            + N V W +++ G    G  +
Sbjct: 333 QK-NVVSWTAMVVGYGQTGRAE 353



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 156/313 (49%), Gaps = 21/313 (6%)

Query: 36  ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIK 95
           E +Q+HA  ++TN   H  + S L+ +Y       LHYA+++FDR+ Q  ++V +  ++ 
Sbjct: 288 EGKQIHACIIRTNFQDHIYVGSALIDMYCK--CKCLHYAKTVFDRMKQK-NVVSWTAMVV 344

Query: 96  CYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF 155
            Y    R+ EA+ +F D+    + PD++TL   I   A + +++EG Q HG     G   
Sbjct: 345 GYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIH 404

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP 215
              V +SLV++Y K G+ID   R+F+ M+ +D VSW  ++  Y + G     ++LFD+M 
Sbjct: 405 YVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMV 464

Query: 216 DRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNR-----NLVSWNAMINGYMKAGDV 266
              L     + T ++   S+ G VE  +  F  M +      ++  ++ MI+ + ++G +
Sbjct: 465 QHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRL 524

Query: 267 DSACELFDDMEI-RDLITWNSMIAGYELNGRFMEALELLETMLIGDV-LPNDATLVSALS 324
           + A    + M    D I W ++++     G         E+++  D   P   TL+S++ 
Sbjct: 525 EEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIY 584

Query: 325 AVAGLAVLNKGRW 337
           A       +KG+W
Sbjct: 585 A-------SKGKW 590



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 56/254 (22%), Positives = 110/254 (43%), Gaps = 37/254 (14%)

Query: 32  STHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYN 91
           S+ +E  Q H  ++ + LI++  +S+ L++LY      ++  +  +F+  +     V + 
Sbjct: 385 SSLEEGSQFHGKAITSGLIHYVTVSNSLVTLY--GKCGDIDDSTRLFNE-MNVRDAVSWT 441

Query: 92  LLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKL 151
            ++  Y    R+ E + LF  ++   L PD  TL  VI   +R G +++G++     FKL
Sbjct: 442 AMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQR----YFKL 497

Query: 152 GFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLF 211
                         M +++G +              +  ++C+ID + + G +E AM+  
Sbjct: 498 --------------MTSEYGIV------------PSIGHYSCMIDLFSRSGRLEEAMRFI 531

Query: 212 DEMP-DRDLFSWTCLVDGFSKCGKVEI---AREIFYRMPNRNLVSWNAMINGYMKAGDVD 267
           + MP   D   WT L+      G +EI   A E    +   +   +  + + Y   G  D
Sbjct: 532 NGMPFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWD 591

Query: 268 SACELFDDMEIRDL 281
           S  +L   M  +++
Sbjct: 592 SVAQLRRGMREKNV 605


>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
          Length = 505

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 215/483 (44%), Positives = 310/483 (64%), Gaps = 7/483 (1%)

Query: 212 DEMPDRDLFSW---TCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDS 268
           D +P +  FS    +C + G ++ G+     +I       +++    +++ Y K G V+ 
Sbjct: 25  DVLPSKTSFSLILRSCAISGEAQLGEA-FHCQIMKMGFEYDMILQTGLLDFYAKHGYVEE 83

Query: 269 ACELFDDMEIRDL--ITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326
           A  LFD+M  R+   +TWN+MI+ Y   G F  A+ + + M   +V P + T+VS LSA 
Sbjct: 84  ARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSAC 143

Query: 327 AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWT 386
           A L  L+ G W+H YI      +D VLG  LI MY KCG++E+A+ VF  +S+K +  W 
Sbjct: 144 AHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWN 203

Query: 387 AMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIND 446
           ++IVGLGM+G   +A+  F  M + G+KP  +TF+G+L+ CSH+GL++ G+RYF+ M+  
Sbjct: 204 SIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGV 263

Query: 447 YGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEY 506
           YG+EP +EHYGC+VD+L R GYL+EA   I +MPM+PN ++  SLL   + H +  +GE 
Sbjct: 264 YGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQ 323

Query: 507 AANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLH 566
               L+++ P   G YV LSN+YA+  +WD V+  R++M KRG  K PG SSIE   ++H
Sbjct: 324 VTQQLLELDPCDGGNYVFLSNLYASLSRWDDVNTCRKLMIKRGVHKTPGCSSIEVNNIVH 383

Query: 567 EFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLA 626
           EFV GD SHPQ  +I++ L E+  +LK  GHVP+T  VL  IE++ EKE  +  HSER+A
Sbjct: 384 EFVAGDTSHPQFTQINAFLDEIAKELKGQGHVPNTANVLHDIEEE-EKEGAIRYHSERIA 442

Query: 627 IAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCK 686
           +AFGL++      IR+VKNLR C+DCHS  KL+S  + REIIVRD  RFHHF+NGSCSC 
Sbjct: 443 VAFGLMSTPPGKTIRVVKNLRTCSDCHSAMKLISNAFKREIIVRDRKRFHHFRNGSCSCN 502

Query: 687 DFW 689
           D+W
Sbjct: 503 DYW 505



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 150/331 (45%), Gaps = 43/331 (12%)

Query: 107 LTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSM 166
           L  +  +L   +LP   +   +++  A  G  + G+  H  + K+GF +D  + + L+  
Sbjct: 15  LGFYSGMLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDF 74

Query: 167 YAKFGEIDLGRRVFDAMDDK--DLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL----F 220
           YAK G ++  R +FD M ++  + V+WN +I  YV+ GE   A+ +F +M   ++     
Sbjct: 75  YAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEV 134

Query: 221 SWTCLVDGFSKCGKVEIAREIFYRMPNRNL----VSWNAMINGYMKAGDVDSACELFDDM 276
           +   L+   +  G +++   I   +  + L    V  NA+I+ Y K G +++A ++F  +
Sbjct: 135 TMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGL 194

Query: 277 EIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGR 336
             +++  WNS+I G  +NGR  EA+     M    + P+  T V  LS  +   +L+ G+
Sbjct: 195 SRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQ 254

Query: 337 WMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHG 396
              S ++       GV G                        +  V H+  M+  LG  G
Sbjct: 255 RYFSEML-------GVYGL-----------------------EPGVEHYGCMVDLLGRAG 284

Query: 397 MATQALDLFNKMCRMGMKPTAITFIGVLNAC 427
              +AL+L      M MKP ++    +L AC
Sbjct: 285 YLKEALELIRA---MPMKPNSMVLGSLLRAC 312



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 122/286 (42%), Gaps = 20/286 (6%)

Query: 19  LPSRLHWN-ILKFSSTHKETQ---QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYA 74
           LPS+  ++ IL+  +   E Q     H   +K    Y   + + LL  Y       +  A
Sbjct: 27  LPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKH--GYVEEA 84

Query: 75  RSIFDRILQHPS-LVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           R++FD + +  S  V +N +I  YV       A+++F  +    + P   T+  ++   A
Sbjct: 85  RNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACA 144

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
            LGA+  G+ IHG +       D  + ++L+ MY K G ++    VF  +  K++  WN 
Sbjct: 145 HLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNS 204

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREIFYRMPN-- 247
           +I G    G  E A+  F  M       D  ++  ++ G S  G +   +  F  M    
Sbjct: 205 IIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVY 264

Query: 248 ---RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAG 290
                +  +  M++   +AG +  A EL   M ++     NSM+ G
Sbjct: 265 GLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKP----NSMVLG 306


>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 740

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 250/688 (36%), Positives = 375/688 (54%), Gaps = 74/688 (10%)

Query: 73  YARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDR-----FLLPDNFTLPC 127
           YAR +FD I Q P+L  +N L+  Y  +    E    F  L DR      +L + ++L  
Sbjct: 56  YARRVFDGIPQ-PNLFSWNNLLLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSG 114

Query: 128 VIKGAARL---------------------------GAIKEGKQIHGLVFKLGFGFDKFVL 160
           ++  A +                            G +  GKQIHG V KLGF     V 
Sbjct: 115 LVGAAVKAYNTMMKDFSSNLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVG 174

Query: 161 SSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLF 220
           S L+ MY+K G I   ++VF  +DD++ V +N L+ G +  G +E A++LF  M ++D  
Sbjct: 175 SPLLDMYSKVGCISDAKKVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGM-EKDSV 233

Query: 221 SWTCLVDGFSKCGKVEIAREIFYRMPNRNL------------------------------ 250
           SW+ ++ G ++ G  + A E F  M    L                              
Sbjct: 234 SWSAMIKGLAQNGMEKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACI 293

Query: 251 ---------VSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEAL 301
                       +A+I+ Y K   +  A  +FD M+ +++++W +M+ GY   GR  EA+
Sbjct: 294 IRTNLQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAV 353

Query: 302 ELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMY 361
           ++   M    + P+  TL  A+SA A ++ L +G   H   +  G +    +   L+ +Y
Sbjct: 354 KIFLDMQRSGIDPDHYTLGQAISACANISSLEEGSQFHGKAITAGLIHYITVSNSLVTLY 413

Query: 362 SKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFI 421
            KCG I+ +  +F  ++ +    WTAM+      G A +A+ LF+KM ++G+KP  +T  
Sbjct: 414 GKCGDIDDSTRLFNEMNVRDEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLT 473

Query: 422 GVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPM 481
           GV++ACS AGLV  G+RYF +MIN+YGI P+  HY C++D+  R+G +EEA   I  MP 
Sbjct: 474 GVISACSRAGLVEKGQRYFELMINEYGIVPSNGHYSCMIDLFSRSGRIEEAMGFINGMPF 533

Query: 482 RPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEV 541
           RP+ + W +LLS  RN GN +IG++AA +LI++ P     Y +LS+IYA+ G+WD V+++
Sbjct: 534 RPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDCVAQL 593

Query: 542 REMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDT 601
           R  MK++  RK+PG S I+ +G LH F   D+S P +D+I++KL E+  K+   G+ PDT
Sbjct: 594 RRGMKEKNVRKEPGQSWIKWKGKLHSFSADDESSPYSDQIYAKLEELYQKIIDNGYKPDT 653

Query: 602 TQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSG 661
           + V   +E +  K   L  HSERLAIAFGLI V S  PIR+ KNLRVC DCH+ TK +S 
Sbjct: 654 SFVHHDVE-EAVKIKMLNCHSERLAIAFGLIFVPSGLPIRVGKNLRVCVDCHNATKHISS 712

Query: 662 IYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           +  REI+VRD  RFH FK+G+CSC DFW
Sbjct: 713 VTGREILVRDAVRFHRFKDGTCSCGDFW 740



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 124/489 (25%), Positives = 207/489 (42%), Gaps = 85/489 (17%)

Query: 51  YHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLF 110
           Y+S    + + L    H+  +H       R L HP   L+N ++  Y   + S  A  +F
Sbjct: 5   YYSAQIKQCIGLGASRHVKMIH---GNIIRTLPHPETFLHNNIVHAYALIRSSIYARRVF 61

Query: 111 CDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKF 170
                     D    P                             + F  ++L+  Y+K 
Sbjct: 62  ----------DGIPQP-----------------------------NLFSWNNLLLAYSKS 82

Query: 171 GEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP--------------- 215
           G +    R F+ + D+D V+WN LI+GY   G V  A+K ++ M                
Sbjct: 83  GHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMKDFSSNLTRVTLMTM 142

Query: 216 -------------------------DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNL 250
                                    +  L   + L+D +SK G +  A+++FY + +RN 
Sbjct: 143 LKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISDAKKVFYGLDDRNT 202

Query: 251 VSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIG 310
           V +N ++ G +  G ++ A +LF  ME +D ++W++MI G   NG   EA+E    M I 
Sbjct: 203 VMYNTLMGGLLACGMIEDALQLFRGME-KDSVSWSAMIKGLAQNGMEKEAIECFREMKIE 261

Query: 311 DVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESA 370
            +  +     S L A  GL  +N GR +H+ I++        +G+ LI MY KC  +  A
Sbjct: 262 GLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDMYCKCKCLHYA 321

Query: 371 LTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHA 430
            TVF  + +K V  WTAM+VG G  G A +A+ +F  M R G+ P   T    ++AC++ 
Sbjct: 322 KTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAISACANI 381

Query: 431 GLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMS 490
             + +G ++    I   G+   I     LV +  + G ++++      M +R   V W +
Sbjct: 382 SSLEEGSQFHGKAITA-GLIHYITVSNSLVTLYGKCGDIDDSTRLFNEMNVRDE-VSWTA 439

Query: 491 LLSGARNHG 499
           ++S     G
Sbjct: 440 MVSAYAQFG 448



 Score =  129 bits (323), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 89/313 (28%), Positives = 158/313 (50%), Gaps = 21/313 (6%)

Query: 36  ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIK 95
           + +Q+HA  ++TNL  H  + S L+ +Y       LHYA+++FDR+ Q  ++V +  ++ 
Sbjct: 285 DGRQIHACIIRTNLQDHIYVGSALIDMYCK--CKCLHYAKTVFDRMKQ-KNVVSWTAMVV 341

Query: 96  CYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF 155
            Y    R+ EA+ +F D+    + PD++TL   I   A + +++EG Q HG     G   
Sbjct: 342 GYGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAISACANISSLEEGSQFHGKAITAGLIH 401

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP 215
              V +SLV++Y K G+ID   R+F+ M+ +D VSW  ++  Y + G    A++LFD+M 
Sbjct: 402 YITVSNSLVTLYGKCGDIDDSTRLFNEMNVRDEVSWTAMVSAYAQFGRAVEAIQLFDKMV 461

Query: 216 D----RDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLV-----SWNAMINGYMKAGDV 266
                 D  + T ++   S+ G VE  +  F  M N   +      ++ MI+ + ++G +
Sbjct: 462 QLGLKPDGVTLTGVISACSRAGLVEKGQRYFELMINEYGIVPSNGHYSCMIDLFSRSGRI 521

Query: 267 DSACELFDDMEIR-DLITWNSMIAGYELNGRFMEALELLETMLIGDV-LPNDATLVSALS 324
           + A    + M  R D I W ++++     G         E+++  D   P   TL+S++ 
Sbjct: 522 EEAMGFINGMPFRPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIY 581

Query: 325 AVAGLAVLNKGRW 337
           A       +KG+W
Sbjct: 582 A-------SKGKW 587



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/254 (22%), Positives = 108/254 (42%), Gaps = 37/254 (14%)

Query: 32  STHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYN 91
           S+ +E  Q H  ++   LI++  +S+ L++LY      ++  +  +F+  +     V + 
Sbjct: 382 SSLEEGSQFHGKAITAGLIHYITVSNSLVTLY--GKCGDIDDSTRLFNE-MNVRDEVSWT 438

Query: 92  LLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKL 151
            ++  Y    R+ EA+ LF  ++   L PD  TL  VI   +R G +++G++     F+L
Sbjct: 439 AMVSAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLTGVISACSRAGLVEKGQR----YFEL 494

Query: 152 GFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLF 211
                         M  ++G +                 ++C+ID + + G +E AM   
Sbjct: 495 --------------MINEYGIVPSNGH------------YSCMIDLFSRSGRIEEAMGFI 528

Query: 212 DEMPDR-DLFSWTCLVDGFSKCGKVEI---AREIFYRMPNRNLVSWNAMINGYMKAGDVD 267
           + MP R D   WT L+      G +EI   A E    +   +   +  + + Y   G  D
Sbjct: 529 NGMPFRPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWD 588

Query: 268 SACELFDDMEIRDL 281
              +L   M+ +++
Sbjct: 589 CVAQLRRGMKEKNV 602


>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
          Length = 1408

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 234/697 (33%), Positives = 374/697 (53%), Gaps = 91/697 (13%)

Query: 71   LHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIK 130
            L  A  +F   + +P  +L+N  I   + +++  + + LF  +   FL  +  T+  V++
Sbjct: 725  LEKANQVFHE-MPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQ 783

Query: 131  GAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK---- 186
               ++GA+   KQIHG VF+ G   D  + + L+SMY+K G+++L RRVFD+M+++    
Sbjct: 784  ACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSS 843

Query: 187  -------------------------------DLVSWNCLIDGYVKKGEVEVAMKLFDEMP 215
                                           D+V+WNCL+ G+   G  E  + +   M 
Sbjct: 844  WNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQ 903

Query: 216  ---------------------------------------DRDLFSWTCLVDGFSKCGKVE 236
                                                   D D++  T L+D + K   + 
Sbjct: 904  GEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLX 963

Query: 237  IAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIR----DLITWNSMIAGYE 292
             A+ +F  M NRN+ +WN++++GY   G  + A  L + ME      DL+TWN MI+GY 
Sbjct: 964  SAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYA 1023

Query: 293  LNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV 352
            + G   +A            +PN A++   L A A L++L KG+ +H   ++NGF+ D  
Sbjct: 1024 MWGCARKAF-----------MPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVF 1072

Query: 353  LGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG 412
            + T LI MYSK  S+++A  VFR I  K +  W  MI+G  + G+  +A+ +FN+M ++G
Sbjct: 1073 VATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVG 1132

Query: 413  MKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEA 472
            + P AITF  +L+AC ++GL+ +G +YF+ MI DY I P +EHY C+VD+L R GYL+EA
Sbjct: 1133 VGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEA 1192

Query: 473  KSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAA 532
               I +MP++P+  IW +LL   R H N    E AA NL K+ P+    Y+++ N+Y+  
Sbjct: 1193 WDLIHTMPLKPDATIWGALLGSCRIHKNLXFAETAAKNLFKLEPNNSANYILMMNLYSIF 1252

Query: 533  GQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKL 592
             +W+ +  +RE+M   G R     S I+    +H F   +K HP   +I+ +L ++ +++
Sbjct: 1253 NRWEDMDHLRELMGAAGVRNRQVWSWIQINQRVHVFSSDEKPHPDAGKIYFELYQLVSEM 1312

Query: 593  KAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDC 652
            K  G+VPD   V   + D+ EK+  L +H+E+LAI +GLI +K+  PIR++KN R+C+DC
Sbjct: 1313 KKLGYVPDVNCVYQNM-DEVEKQKILLSHTEKLAITYGLIKMKAGEPIRVIKNTRICSDC 1371

Query: 653  HSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            HS  K +S +  RE+ +RD  RFHHF+ G CSC DFW
Sbjct: 1372 HSAAKYISLVKARELFLRDGVRFHHFREGKCSCNDFW 1408



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 127/492 (25%), Positives = 219/492 (44%), Gaps = 71/492 (14%)

Query: 104  HEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSL 163
            H  L +F +L  + ++ D+      +K   R+  I  G +IHG + K GF  D ++  +L
Sbjct: 656  HIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCAL 715

Query: 164  VSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP-------- 215
            ++ Y +   ++   +VF  M + + + WN  I   ++  +++  ++LF +M         
Sbjct: 716  MNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAET 775

Query: 216  -------------------------------DRDLFSWTCLVDGFSKCGKVEIAREIFYR 244
                                           D D+     L+  +SK GK+E+AR +F  
Sbjct: 776  ATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDS 835

Query: 245  MPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDL----ITWNSMIAGYELNGRFMEA 300
            M NRN  SWN+MI+ Y   G ++ A  LF ++E  D+    +TWN +++G+ L+G   E 
Sbjct: 836  MENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEV 895

Query: 301  LELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQM 360
            L +L+ M      PN +++ S L A++ L  LN G+  H Y+++NGF  D  +GT LI M
Sbjct: 896  LNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDM 955

Query: 361  YSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITF 420
            Y K  S+ SA  VF  +  + +  W +++ G    GM   AL L N+M + G+KP  +T+
Sbjct: 956  YVKNHSLXSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTW 1015

Query: 421  IG------------------------VLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHY 456
             G                        +L AC+   L+  G+    + I +  IE      
Sbjct: 1016 NGMISGYAMWGCARKAFMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVAT 1075

Query: 457  GCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGAR--NHGNKDIGEYAANNLIKV 514
              L+D+  ++  L+ A      +  +     W  ++ G      G + I  +     + V
Sbjct: 1076 A-LIDMYSKSSSLKNAHKVFRRIQNK-TLASWNCMIMGFAIFGLGKEAISVFNEMQKVGV 1133

Query: 515  APDTIGCYVVLS 526
             PD I    +LS
Sbjct: 1134 GPDAITFTALLS 1145



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 90/404 (22%), Positives = 164/404 (40%), Gaps = 48/404 (11%)

Query: 162  SLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGY-VKKGEVEVAMKLFDEMPDRDL- 219
            +L+S Y  FG+      VF     ++ + WN  ++ +    G + + +++F E+  + + 
Sbjct: 612  NLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVV 671

Query: 220  FSWTCLVDGFSKCGKV-------EIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACEL 272
            F           C +V       EI   +  R  + ++    A++N Y +   ++ A ++
Sbjct: 672  FDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQV 731

Query: 273  FDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVL 332
            F +M   + + WN  I     + +  + +EL   M    +    AT+V  L A   +  L
Sbjct: 732  FHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGAL 791

Query: 333  NKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMI--- 389
            N  + +H Y+ + G   D  L   LI MYSK G +E A  VF ++  +    W +MI   
Sbjct: 792  NAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSY 851

Query: 390  VGLG--------------------------------MHGMATQALDLFNKMCRMGMKPTA 417
              LG                                +HG   + L++  +M   G KP +
Sbjct: 852  AALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNS 911

Query: 418  ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIE 477
             +   VL A S  G +N G+     ++ + G +  +     L+D+  +   L  A++  +
Sbjct: 912  SSMTSVLQAISELGFLNMGKETHGYVLRN-GFDCDVYVGTSLIDMYVKNHSLXSAQAVFD 970

Query: 478  SMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIK--VAPDTI 519
            +M  R N   W SL+SG    G  +      N + K  + PD +
Sbjct: 971  NMKNR-NIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLV 1013


>gi|297611064|ref|NP_001065554.2| Os11g0109600 [Oryza sativa Japonica Group]
 gi|255679703|dbj|BAF27399.2| Os11g0109600 [Oryza sativa Japonica Group]
          Length = 1124

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 241/582 (41%), Positives = 340/582 (58%), Gaps = 16/582 (2%)

Query: 120  PDNFTLPCVIKGAARLG-AIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRR 178
            P + T+P  +K A+RL   ++ G+Q+H    KL    +  VL+SL+S+YAK G +   +R
Sbjct: 547  PSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQR 606

Query: 179  VFDAMDDKDLVSWNCLIDGYVKKGE----VEVAMKLFDEMPDRDLFSWTCLVDGFSKCGK 234
            VFD M     V W  LI  Y+  G+    V VA   F      D F+    V   + C +
Sbjct: 607  VFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFT---AVRVLTACAR 663

Query: 235  VE--IAREIFYRMPNRNLVSWN-----AMINGYMKAGDVDSACELFDDMEIRDLITWNSM 287
            +      E  +R   +  V+ +     A ++ Y+K G++  A E+FD M  +D + W +M
Sbjct: 664  IADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAM 723

Query: 288  IAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGF 347
            + GY  NG   EAL+L   M    + P+   +  ALSA   L  L+ GR     +  + F
Sbjct: 724  VGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEF 783

Query: 348  VVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNK 407
            + + VLGT LI MY+KCGS   A  VF+ + KK +  W AMI+GLGM G    A  L  +
Sbjct: 784  LDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQ 843

Query: 408  MCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTG 467
            M + G+K    TFIG+L +C+H GL+ DGRRYF+ M   Y I P IEHYGC+VD+L R G
Sbjct: 844  MEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAG 903

Query: 468  YLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSN 527
             L+EA   ++ MPM  N VI  +LL G + H N ++ E+    LI + P   G YV+LSN
Sbjct: 904  LLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSN 963

Query: 528  IYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSE 587
            IY+  G+W+  +++R  MK +G  K P  S +E  G +HEF VGDKSHP +D+I+ KL E
Sbjct: 964  IYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDE 1023

Query: 588  MRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLR 647
            +  ++K  G+ P T  V+  +ED+ EKE  L +HSE+LAIAF L+       IR+ KNLR
Sbjct: 1024 LGLEMKTMGYEPTTEVVMFDVEDE-EKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLR 1082

Query: 648  VCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            VC+DCH+  KL+S I +REIIVRDN+RFH F++GSCSC D+W
Sbjct: 1083 VCSDCHTAIKLVSRITHREIIVRDNNRFHCFRDGSCSCNDYW 1124



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 101/343 (29%), Positives = 158/343 (46%), Gaps = 22/343 (6%)

Query: 12  IHALQQH--LPSRLHWNI---LKFSS----THKETQQLHALSVKTNLIYHSGISSRLLSL 62
           +HAL+ H  LP+  H  I   LK +S      +  +QLHA S+K     +  + + LLSL
Sbjct: 535 LHALRVHCLLPNPSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSL 594

Query: 63  YVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDN 122
           Y    +  LH A+ +FD  + HPS V +  LI  Y+      EA+ +  +     + PD+
Sbjct: 595 YAKCGL--LHRAQRVFDE-MPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDS 651

Query: 123 FTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDA 182
           FT   V+   AR+  +  G+ +     + G     FV ++ V +Y K GE+   R VFD 
Sbjct: 652 FTAVRVLTACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDK 711

Query: 183 MDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIA 238
           M  KD V+W  ++ GY   G    A+ LF  M       D ++    +   ++ G +++ 
Sbjct: 712 MRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLG 771

Query: 239 REIFYRMPN-----RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYEL 293
           R+   RM +      N V   A+I+ Y K G    A  +F  M  +D+I WN+MI G  +
Sbjct: 772 RQAI-RMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGM 830

Query: 294 NGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGR 336
            G    A  L+  M    V  ND T +  L +     ++  GR
Sbjct: 831 TGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGR 873


>gi|15218900|ref|NP_176180.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806498|sp|Q0WQW5.2|PPR85_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g59720, mitochondrial; Flags: Precursor
 gi|332195486|gb|AEE33607.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 638

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 233/579 (40%), Positives = 345/579 (59%), Gaps = 36/579 (6%)

Query: 142 KQIHGLVFKLGFGFDK---FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGY 198
           KQ+H    +  +  +    F+   ++ + + F +++   RVFD++++     WN LI   
Sbjct: 65  KQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRAC 124

Query: 199 VKK-GEVEVAMKLFDEM-------PDRDLFSWT----CLVDGFSKCGKV--EIAREIFYR 244
                  E A  L+ +M       PD+  F +       + GFS+  +V  +I +  F  
Sbjct: 125 AHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGF-- 182

Query: 245 MPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELL 304
               ++   N +I+ Y   G +D A ++FD+M  R L++WNSMI      G +  AL+L 
Sbjct: 183 --GGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLF 240

Query: 305 ETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFV---VDGVLGTLLIQMY 361
             M      P+  T+ S LSA AGL  L+ G W H+++++   V   +D ++   LI+MY
Sbjct: 241 REMQ-RSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMY 299

Query: 362 SKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMC--RMGMKPTAIT 419
            KCGS+  A  VF+ + K+ +  W AMI+G   HG A +A++ F++M   R  ++P ++T
Sbjct: 300 CKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVT 359

Query: 420 FIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM 479
           F+G+L AC+H G VN GR+YF+MM+ DY IEP +EHYGC+VD++ R GY+ EA   + SM
Sbjct: 360 FVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSM 419

Query: 480 PMRPNFVIWMSLLSGARNHGNK-DIGEYAANNLIKVAPDT-------IGCYVVLSNIYAA 531
           PM+P+ VIW SLL      G   ++ E  A N+I    D         G YV+LS +YA+
Sbjct: 420 PMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYAS 479

Query: 532 AGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNK 591
           A +W+ V  VR++M + G RK+PG SSIE  G+ HEF  GD SHPQT +I+ +L  + ++
Sbjct: 480 ASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQQLKVIDDR 539

Query: 592 LKAAGHVPDTTQV-LLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCN 650
           L++ G++PD +Q  L+   +   KE  L  HSERLAIAFGLIN+  ++PIRI KNLRVCN
Sbjct: 540 LRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQTPIRIFKNLRVCN 599

Query: 651 DCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           DCH VTKL+S ++N EIIVRD  RFHHFK+GSCSC D+W
Sbjct: 600 DCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 638



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 128/478 (26%), Positives = 196/478 (41%), Gaps = 122/478 (25%)

Query: 12  IHALQQHLPS----------RLHWNILKFSST---HKETQQLHALSVKTNLIYHSGISSR 58
           +H L  H+P             H  I   + T     + +QLHA +++T   Y    ++ 
Sbjct: 26  VHPLSPHIPPASSPSASTAGNHHQRIFSLAETCSDMSQLKQLHAFTLRTT--YPEEPATL 83

Query: 59  LLS---LYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLD 115
            L    L +    ++++YA  +FD I  H S +   L+  C     R  EA  L+  +L+
Sbjct: 84  FLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLE 143

Query: 116 RF-LLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEID 174
           R    PD  T P V+K  A +    EGKQ+H  + K GFG D +V + L+ +Y   G +D
Sbjct: 144 RGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLD 203

Query: 175 LGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM-----PD------------- 216
           L R+VFD M ++ LVSWN +ID  V+ GE + A++LF EM     PD             
Sbjct: 204 LARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQRSFEPDGYTMQSVLSACAG 263

Query: 217 -----------------------RDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSW 253
                                   D+     L++ + KCG + +A ++F  M  R+L SW
Sbjct: 264 LGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASW 323

Query: 254 NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL 313
           NAMI G+   G  + A   FD                     R ++  E        +V 
Sbjct: 324 NAMILGFATHGRAEEAMNFFD---------------------RMVDKRE--------NVR 354

Query: 314 PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTV 373
           PN  T V  L A      +NKGR     +V++                     IE AL  
Sbjct: 355 PNSVTFVGLLIACNHRGFVNKGRQYFDMMVRD-------------------YCIEPALE- 394

Query: 374 FRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAG 431
                     H+  ++  +   G  T+A+D+   +  M MKP A+ +  +L+AC   G
Sbjct: 395 ----------HYGCIVDLIARAGYITEAIDM---VMSMPMKPDAVIWRSLLDACCKKG 439


>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 632

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 240/621 (38%), Positives = 356/621 (57%), Gaps = 62/621 (9%)

Query: 70  NLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVI 129
           NL ++  IF+  L  P++  YN L+K +  +   H  ++ F + L   +LP N   P   
Sbjct: 73  NLRHSVLIFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQL---VLP-NAPNP--- 125

Query: 130 KGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLV 189
                                     D++  +S++   A   ++  G++V          
Sbjct: 126 --------------------------DEYTFTSVLKACAGLAQVLEGQKV---------- 149

Query: 190 SWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRN 249
             +C +  Y                 + +LF    LVD + K G   IA+++F  M  R+
Sbjct: 150 --HCFVTKY---------------GCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRD 192

Query: 250 LVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETML- 308
           +VSWN +I+GY  +G VD A  +FD M  ++L++W++MI+GY  N ++ +A+EL   M  
Sbjct: 193 VVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQMQH 252

Query: 309 IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIE 368
            G + PND TLVS LSA A L  L+ G+W+H +I +N   V   LG  L  MY+KCG + 
Sbjct: 253 EGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVL 312

Query: 369 SALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACS 428
            A  VF  + ++ V  W+ +I+GL M+G A +A + F +M   G++P  I+F+G+L AC+
Sbjct: 313 EAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACT 372

Query: 429 HAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIW 488
           HAGLV+ G  YF+MM   YGI P IEHYGC+VD+L R G L++A+S I SMPM+PN ++W
Sbjct: 373 HAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVW 432

Query: 489 MSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548
            +LL G R + + + GE     ++++  +  G  V L+N+YA+ G+ D  +  R  M+  
Sbjct: 433 GALLGGCRIYKDAERGERVVWRILELDSNHSGSLVYLANVYASMGRLDDAASCRLRMRDN 492

Query: 549 GFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCI 608
              K PG S IE    ++EF +GD SHPQ+  I+S + E++ K+K AG+ P T  V+  I
Sbjct: 493 KSMKTPGCSWIEINNSVYEFFMGDSSHPQSLRIYSMIRELKWKMKVAGYKPKTDLVIHNI 552

Query: 609 EDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREII 668
            D++EKE  L  HSE+LA+AFGLIN    + IRIVKNLRVCNDCH   K++S I  REI+
Sbjct: 553 -DEEEKEDALSTHSEKLALAFGLINTSEGTTIRIVKNLRVCNDCHDAIKIISKIVEREIV 611

Query: 669 VRDNSRFHHFKNGSCSCKDFW 689
           VRD SRFHHFK+G CSC D+W
Sbjct: 612 VRDRSRFHHFKDGKCSCNDYW 632


>gi|225427070|ref|XP_002275784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31920
           [Vitis vinifera]
 gi|297742017|emb|CBI33804.3| unnamed protein product [Vitis vinifera]
          Length = 605

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 227/563 (40%), Positives = 344/563 (61%), Gaps = 12/563 (2%)

Query: 138 IKEGKQIHGLVFKLGFGFDKFVLSSLVSMYA--KFGEIDLGRRVFDAMDDKDLVSWNCLI 195
           ++E KQ H  + KLG   D F  S+LV+  A   +G +D    +F  MD+     +N ++
Sbjct: 44  MEEFKQSHARILKLGLFGDSFCASNLVATCALSDWGSMDYACSIFRQMDELGSFQFNTMM 103

Query: 196 DGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLV 251
            G+VK    E A+  + EM +R    D F++  L+   ++   VE   ++   +    L 
Sbjct: 104 RGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLE 163

Query: 252 S----WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETM 307
           +     N++I+ Y K G++   C +F+ M  R + +W+++I  +   G + + L LL  M
Sbjct: 164 NDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSDCLRLLGDM 223

Query: 308 L-IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGS 366
              G     ++ LVS LSA   L  L+ GR +H ++++N   ++ ++ T LI+MY KCGS
Sbjct: 224 SNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCGS 283

Query: 367 IESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNA 426
           +   + +F+ ++KK    ++ MI GL MHG   + L +F +M   G++P  I ++GVLNA
Sbjct: 284 LYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLNA 343

Query: 427 CSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFV 486
           CSHAGLV +G + FN M  ++GIEPTI+HYGC+VD++ R G ++EA   I+SMPM PN V
Sbjct: 344 CSHAGLVQEGLQCFNRMKLEHGIEPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPNDV 403

Query: 487 IWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMK 546
           +W SLLS ++ H N   GE AA  L K+       YVVLSN+YA A +W+ V++ R  M 
Sbjct: 404 LWRSLLSASKVHNNLQAGEIAAKQLFKLDSQKASDYVVLSNMYAQAQRWEDVAKTRTNMF 463

Query: 547 KRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLL 606
            +G  + PG S +E +  +H FV  D  HPQ++ ++  L +M  +LK  G+ PDTTQV L
Sbjct: 464 SKGLSQRPGFSLVEVKRKMHRFVSQDAGHPQSESVYEMLYQMEWQLKFEGYSPDTTQV-L 522

Query: 607 CIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNRE 666
           C  D++EK+  L  HS++LAIA+ LI+    SPIRIV+NLR+CNDCH+ TKL+S I++RE
Sbjct: 523 CDVDEEEKKQRLSGHSQKLAIAYALIHTSQGSPIRIVRNLRMCNDCHTYTKLISIIFDRE 582

Query: 667 IIVRDNSRFHHFKNGSCSCKDFW 689
           I VRD  RFHHFK+G+CSC+D+W
Sbjct: 583 ITVRDRHRFHHFKDGACSCRDYW 605



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 103/371 (27%), Positives = 185/371 (49%), Gaps = 29/371 (7%)

Query: 26  NILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHP 85
           ++LK  S  +E +Q HA  +K  L   S  +S L++        ++ YA SIF ++ +  
Sbjct: 36  SLLKKCSNMEEFKQSHARILKLGLFGDSFCASNLVATCALSDWGSMDYACSIFRQMDELG 95

Query: 86  SLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIH 145
           S   +N +++ +V +  + EAL  + ++ +R + PDNFT P ++K  ARL A++EG Q+H
Sbjct: 96  SFQ-FNTMMRGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVH 154

Query: 146 GLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVE 205
             + KLG   D FV +SL+SMY K GEI +   VF+ M+++ + SW+ LI  +   G   
Sbjct: 155 AHILKLGLENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWS 214

Query: 206 VAMKLFDEMPDRDLF--SWTCLVDGFSKC---GKVEIAREI----FYRMPNRNLVSWNAM 256
             ++L  +M +   +    + LV   S C   G +++ R +       +   N++   ++
Sbjct: 215 DCLRLLGDMSNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVETSL 274

Query: 257 INGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPND 316
           I  Y+K G +     LF  M  ++ ++++ MI+G  ++G   E L +   ML   + P+D
Sbjct: 275 IEMYLKCGSLYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGREGLRIFTEMLEQGLEPDD 334

Query: 317 ATLVSALSAVA-------GLAVLNKGRWMHSY---IVKNGFVVDGVLGTLLIQMYSKCGS 366
              V  L+A +       GL   N+ +  H     I   G +VD         +  + G 
Sbjct: 335 IVYVGVLNACSHAGLVQEGLQCFNRMKLEHGIEPTIQHYGCMVD---------LMGRAGK 385

Query: 367 IESALTVFRAI 377
           I+ AL + +++
Sbjct: 386 IDEALELIKSM 396


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 225/625 (36%), Positives = 365/625 (58%), Gaps = 32/625 (5%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           A  +FD++     ++ +N +I  YV N  +   L ++  ++   +  D  T+  V+ G A
Sbjct: 66  ASELFDKLCDR-DVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCA 124

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
           + G +  GK +H L  K  F       ++L+ MY+K G++D   RVF+ M ++++VSW  
Sbjct: 125 KSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTS 184

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRN 249
           +I GY + G  + A+ L  +M       D+ + T ++   ++ G ++  +++   +   N
Sbjct: 185 MIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANN 244

Query: 250 LVS----WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLE 305
           + S     NA+++ Y K G ++ A  +F  M ++D+I+WN+M+                 
Sbjct: 245 MASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMV----------------- 287

Query: 306 TMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCG 365
               G++ P+  T+   L A A L+ L +G+ +H YI++NG+  D  +   L+ +Y KCG
Sbjct: 288 ----GELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCG 343

Query: 366 SIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN 425
            +  A  +F  I  K +  WT MI G GMHG   +A+  FN+M   G++P  ++FI +L 
Sbjct: 344 VLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILY 403

Query: 426 ACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNF 485
           ACSH+GL+  G R+F +M ND+ IEP +EHY C+VD+L RTG L +A   IE++P+ P+ 
Sbjct: 404 ACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDA 463

Query: 486 VIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMM 545
            IW +LL G R + + ++ E  A  + ++ P+  G YV+L+NIYA A +W++V  +RE +
Sbjct: 464 TIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKI 523

Query: 546 KKRGFRKDPGSSSIEHRGVLHEFVVG-DKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQV 604
            K+G RK+PG S IE +G ++ FV G + SHP + +I S L +MR K+K  G+ P T   
Sbjct: 524 GKKGLRKNPGCSWIEIKGRVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKYA 583

Query: 605 LLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYN 664
           L+   D+ +KE  L  HSE+LA+AFGL+ +  R  IR+ KNLRVC DCH + K +S    
Sbjct: 584 LIN-ADEMQKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETR 642

Query: 665 REIIVRDNSRFHHFKNGSCSCKDFW 689
           REI++RD++RFHHFK+G CSC+ FW
Sbjct: 643 REIVLRDSNRFHHFKDGYCSCRGFW 667



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 83/288 (28%), Positives = 145/288 (50%), Gaps = 22/288 (7%)

Query: 225 LVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDV------------------ 266
           LV  ++ CG ++  R +F  M  +N+  WN M++ Y K GD                   
Sbjct: 2   LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGK 61

Query: 267 --DSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS 324
             +SA ELFD +  RD+I+WNSMI+GY  NG     L + + M+   +  + AT++S L 
Sbjct: 62  RSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLV 121

Query: 325 AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGH 384
             A    L+ G+ +HS  +K+ F         L+ MYSKCG ++ AL VF  + ++ V  
Sbjct: 122 GCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVS 181

Query: 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMI 444
           WT+MI G    G +  A+ L  +M + G+K   +    +L+AC+ +G +++G+   +  I
Sbjct: 182 WTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHD-YI 240

Query: 445 NDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLL 492
               +   +     L+D+  + G +E A S   +M ++ + + W +++
Sbjct: 241 KANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVK-DIISWNTMV 287


>gi|449434268|ref|XP_004134918.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Cucumis sativus]
 gi|449533166|ref|XP_004173548.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Cucumis sativus]
          Length = 712

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 237/664 (35%), Positives = 369/664 (55%), Gaps = 68/664 (10%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           ARS+F++ +  P + LY ++I  Y    R  +AL LF ++  + L+  N     ++KG  
Sbjct: 69  ARSLFNK-MSSPGVNLYTMMIGGYADEGRLEDALKLFYEMPVKDLISWN----SMLKGCL 123

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYA------KFGEIDLGRRVFDAMDDKD 187
           + G +     +          FDK    ++VS         +FG +++   +F  M  KD
Sbjct: 124 KCGDLTMACNM----------FDKMSERNVVSWTTIINGLLEFGRVEVAECLFRVMPTKD 173

Query: 188 LVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPN 247
           + +WN ++ G+   G VE A++LF++MP+R++ SWT ++ G    G+   A  +F++M  
Sbjct: 174 VTAWNSMVHGFFSNGRVEDAIELFEKMPNRNVISWTSVIGGLDHNGRSFEALVVFHKM-- 231

Query: 248 RNLVSWNA------------------------------------------MINGYMKAGD 265
             L S+ A                                          +I+ Y     
Sbjct: 232 --LASFKATSSTLACALTACANICTPFIGVQIHGLIVKTGYCFNEYISASLISFYANCKL 289

Query: 266 VDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSA 325
           +D+A  +F+D   R+++ W +++ GY LN R  +AL++ + M+   VLPN ++L SAL++
Sbjct: 290 IDNASSIFNDNVSRNVVVWTALLTGYGLNCRHTDALQVFKGMMRMSVLPNQSSLTSALNS 349

Query: 326 VAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHW 385
             GL  +++GR +H+   K G   D  +   L+ MY+KCG I   + VF  +S+K V  W
Sbjct: 350 CCGLEAVDRGREVHAVAHKLGLESDIFVSNSLVVMYTKCGHINDGIAVFTRMSRKNVVSW 409

Query: 386 TAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN 445
            ++IVG   HG    AL LF +M R  + P  IT  G+L+AC H+G++  GR +F     
Sbjct: 410 NSIIVGCAQHGFGRWALTLFAQMIRTRVDPDEITLAGLLSACGHSGMLTKGRCFFKHFGK 469

Query: 446 DYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGE 505
           ++GIE T EHY  +VD+L R G LEEA++ I  MP + N+++W++LLS + NH N  + E
Sbjct: 470 NFGIEMTNEHYSSMVDLLGRYGQLEEAEALIHIMPGKANYMVWLALLSSSINHSNVHVAE 529

Query: 506 YAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVL 565
            AA  ++ + P+    Y +LSN+YA+ G+W +VS++R+ MK  G  K PGSS I  +G+ 
Sbjct: 530 RAAKCVLDLQPNCSAAYTLLSNLYASTGKWTEVSKIRKKMKDEGILKQPGSSWITIKGIK 589

Query: 566 HEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERL 625
           H F+ GD+SHP + +I+ KL  +  KLK  G+VPD       +E + +KE  L  HSERL
Sbjct: 590 HNFISGDQSHPLSRKIYQKLEWLGGKLKELGYVPDPKFSFHDVETE-QKEEMLSYHSERL 648

Query: 626 AIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSC 685
           AI FGLI+    S I ++KNLR+C DCH+  KL S +  REI+VRD SRFHHF NG+CSC
Sbjct: 649 AIGFGLISTVEGSTIIVMKNLRICGDCHNAVKLTSKVVGREIVVRDPSRFHHFHNGTCSC 708

Query: 686 KDFW 689
            D+W
Sbjct: 709 GDYW 712



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 125/422 (29%), Positives = 198/422 (46%), Gaps = 44/422 (10%)

Query: 163 LVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSW 222
           L+S + + G ID  R +F+ M    +  +  +I GY  +G +E A+KLF EMP +DL SW
Sbjct: 56  LLSFHLRNGRIDEARSLFNKMSSPGVNLYTMMIGGYADEGRLEDALKLFYEMPVKDLISW 115

Query: 223 TCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLI 282
             ++ G  KCG + +A  +F +M  RN+VSW  +ING ++ G V+ A  LF  M  +D+ 
Sbjct: 116 NSMLKGCLKCGDLTMACNMFDKMSERNVVSWTTIINGLLEFGRVEVAECLFRVMPTKDVT 175

Query: 283 TWNSMIAGYELNGRFMEALELLETM------------------------------LIGDV 312
            WNSM+ G+  NGR  +A+EL E M                              ++   
Sbjct: 176 AWNSMVHGFFSNGRVEDAIELFEKMPNRNVISWTSVIGGLDHNGRSFEALVVFHKMLASF 235

Query: 313 LPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALT 372
               +TL  AL+A A +     G  +H  IVK G+  +  +   LI  Y+ C  I++A +
Sbjct: 236 KATSSTLACALTACANICTPFIGVQIHGLIVKTGYCFNEYISASLISFYANCKLIDNASS 295

Query: 373 VFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGL 432
           +F     + V  WTA++ G G++   T AL +F  M RM + P   +    LN+C     
Sbjct: 296 IFNDNVSRNVVVWTALLTGYGLNCRHTDALQVFKGMMRMSVLPNQSSLTSALNSCCGLEA 355

Query: 433 VNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLL 492
           V+ GR   + + +  G+E  I     LV +  + G++ +  +    M  R N V W S++
Sbjct: 356 VDRGRE-VHAVAHKLGLESDIFVSNSLVVMYTKCGHINDGIAVFTRMS-RKNVVSWNSII 413

Query: 493 SGARNHGNKDIGEYAANNL-----IKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547
            G   HG    G +A          +V PD I     L+ + +A G    +++ R   K 
Sbjct: 414 VGCAQHG---FGRWALTLFAQMIRTRVDPDEI----TLAGLLSACGHSGMLTKGRCFFKH 466

Query: 548 RG 549
            G
Sbjct: 467 FG 468



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 127/272 (46%), Gaps = 44/272 (16%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYV 98
           Q+H L VKT   ++  IS+ L+S Y +  +  +  A SIF+  +   ++V++  L+  Y 
Sbjct: 260 QIHGLIVKTGYCFNEYISASLISFYANCKL--IDNASSIFNDNVSR-NVVVWTALLTGYG 316

Query: 99  FNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKF 158
            N R  +AL +F  ++   +LP+  +L   +     L A+  G+++H +  KLG   D F
Sbjct: 317 LNCRHTDALQVFKGMMRMSVLPNQSSLTSALNSCCGLEAVDRGREVHAVAHKLGLESDIF 376

Query: 159 VLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM---- 214
           V +SLV MY K G I+ G  VF  M  K++VSWN +I G  + G    A+ LF +M    
Sbjct: 377 VSNSLVVMYTKCGHINDGIAVFTRMSRKNVVSWNSIIVGCAQHGFGRWALTLFAQMIRTR 436

Query: 215 --PD--------------------RDLFS--------------WTCLVDGFSKCGKVEIA 238
             PD                    R  F               ++ +VD   + G++E A
Sbjct: 437 VDPDEITLAGLLSACGHSGMLTKGRCFFKHFGKNFGIEMTNEHYSSMVDLLGRYGQLEEA 496

Query: 239 REIFYRMPNR-NLVSWNAMINGYMKAGDVDSA 269
             + + MP + N + W A+++  +   +V  A
Sbjct: 497 EALIHIMPGKANYMVWLALLSSSINHSNVHVA 528



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 110/265 (41%), Gaps = 28/265 (10%)

Query: 254 NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL 313
           N +++ +++ G +D A  LF+ M    +  +  MI GY   GR  +AL+L   M + D++
Sbjct: 54  NYLLSFHLRNGRIDEARSLFNKMSSPGVNLYTMMIGGYADEGRLEDALKLFYEMPVKDLI 113

Query: 314 PNDATLVSALSAVAGLAVLNKGRWMHSY-IVKNGFVVDGVLG------------------ 354
             ++ L   L         N    M    +V    +++G+L                   
Sbjct: 114 SWNSMLKGCLKCGDLTMACNMFDKMSERNVVSWTTIINGLLEFGRVEVAECLFRVMPTKD 173

Query: 355 ----TLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCR 410
                 ++  +   G +E A+ +F  +  + V  WT++I GL  +G + +AL +F+KM  
Sbjct: 174 VTAWNSMVHGFFSNGRVEDAIELFEKMPNRNVISWTSVIGGLDHNGRSFEALVVFHKML- 232

Query: 411 MGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMI-NDYGIEPTIEHYGCLVDILCRTGYL 469
              K T+ T    L AC++      G +   +++   Y     I     L+        +
Sbjct: 233 ASFKATSSTLACALTACANICTPFIGVQIHGLIVKTGYCFNEYIS--ASLISFYANCKLI 290

Query: 470 EEAKSTIESMPMRPNFVIWMSLLSG 494
           + A S       R N V+W +LL+G
Sbjct: 291 DNASSIFNDNVSR-NVVVWTALLTG 314


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 251/708 (35%), Positives = 389/708 (54%), Gaps = 61/708 (8%)

Query: 40  LHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHP--SLVLYNLLIKCY 97
           +HA+   +   ++  + + L+S+Y          AR +FD + +     LV +N ++  Y
Sbjct: 167 VHAVVFASGFEWNVFVGNGLVSMY--GRCGAWENARQVFDEMRERGVGDLVSWNSIVAAY 224

Query: 98  VFNQRSHEALTLFCDLL-DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFD 156
           +    S  A+ +F  +  D  + PD  +L  V+   A +GA   GKQ+HG   + G   D
Sbjct: 225 MQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFED 284

Query: 157 KFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD 216
            FV +++V MYAK G ++   +VF+ M  KD+VSWN ++ GY + G  + A+ LF+++ +
Sbjct: 285 VFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIRE 344

Query: 217 R----DLFSWTCLVDGFSKCGKVEIAREIFYRM--------------------------- 245
                ++ +W+ ++ G+++ G    A ++F +M                           
Sbjct: 345 EKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLH 404

Query: 246 -------------------PNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRD--LITW 284
                              P  +L+  NA+I+ Y K     +A  +FD +  +D  ++TW
Sbjct: 405 GKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTW 464

Query: 285 NSMIAGYELNGRFMEALELLETMLIGD--VLPNDATLVSALSAVAGLAVLNKGRWMHSYI 342
             +I G   +G   EALEL   ML  D  V+PN  T+  AL A A L  L  GR +H+Y+
Sbjct: 465 TVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYV 524

Query: 343 VKNGFVVDGV-LGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQA 401
           ++N F    + +   LI MYSK G +++A  VF  + ++    WT+++ G GMHG   +A
Sbjct: 525 LRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEA 584

Query: 402 LDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVD 461
           L +F +M ++ + P  +TF+ VL ACSH+G+V+ G  YFN M  D+G+ P  EHY C+VD
Sbjct: 585 LQIFYEMQKVXLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVD 644

Query: 462 ILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGC 521
           +L R G L+EA   I  MPM+P   +W++LLS  R + N ++GEYAAN L+++     G 
Sbjct: 645 LLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLELESGNDGS 704

Query: 522 YVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEI 581
           Y +LSNIYA A  W  V+ +R +MK  G +K PG S ++ R     F  GD SHP + +I
Sbjct: 705 YTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDWSHPMSQQI 764

Query: 582 HSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIR 641
           +  L ++  ++KA G+VPD    L  ++D+ EK   L  HSE+LA+A+G++     +PIR
Sbjct: 765 YDLLRDLMQRIKALGYVPDNRFALHDVDDE-EKGDLLSEHSEKLALAYGILTTAPGAPIR 823

Query: 642 IVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           I KNLR C DCHS    +S I   EIIVRD+SRFHHFKNGSCSC+ +W
Sbjct: 824 ITKNLRACGDCHSAFTYISIIIEHEIIVRDSSRFHHFKNGSCSCRGYW 871



 Score =  218 bits (556), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 161/532 (30%), Positives = 260/532 (48%), Gaps = 68/532 (12%)

Query: 57  SRLLSLYVDPHINNLHYARSIFDRILQHPS---LVLYNLLIKCYVFNQRSHEALTLFCDL 113
           + ++S+Y+    N+   A S+  R+  HPS   +  +N LI+  V      + L L+  +
Sbjct: 81  THIISMYLT--FNSPAKALSVLRRL--HPSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRM 136

Query: 114 LDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEI 173
                 PD++T P V+K    + + + G  +H +VF  GF ++ FV + LVSMY + G  
Sbjct: 137 QRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAW 196

Query: 174 DLGRRVFDAMDDK---DLVSWNCLIDGYVKKGEVEVAMKLFDEM-------PD------- 216
           +  R+VFD M ++   DLVSWN ++  Y++ G+   AMK+F+ M       PD       
Sbjct: 197 ENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNV 256

Query: 217 --------------------------RDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNL 250
                                      D+F    +VD ++KCG +E A ++F RM  +++
Sbjct: 257 LPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDV 316

Query: 251 VSWNAMINGYMKAGDVDSACELFDDMEIR----DLITWNSMIAGYELNGRFMEALELLET 306
           VSWNAM+ GY + G  D A  LF+ +       +++TW+++IAGY   G   EAL++   
Sbjct: 317 VSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQ 376

Query: 307 MLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVK-------NGFVVDGVLGTLLIQ 359
           ML+    PN  TLVS LS  A    L  G+  H + +K       N    D ++   LI 
Sbjct: 377 MLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALID 436

Query: 360 MYSKCGSIESALTVFRAISKK--KVGHWTAMIVGLGMHGMATQALDLFNKMCRMG--MKP 415
           MYSKC S ++A  +F  I  K   V  WT +I G   HG A +AL+LF++M +    + P
Sbjct: 437 MYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMP 496

Query: 416 TAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKST 475
            A T    L AC+  G +  GR+    ++ +      +    CL+D+  ++G ++ A+  
Sbjct: 497 NAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVV 556

Query: 476 IESMPMRPNFVIWMSLLSGARNHGNKD--IGEYAANNLIKVAPDTIGCYVVL 525
            ++M  R N V W SL++G   HG  +  +  +     + + PD +   VVL
Sbjct: 557 FDNMHQR-NGVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVPDGVTFVVVL 607


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 240/619 (38%), Positives = 344/619 (55%), Gaps = 14/619 (2%)

Query: 82  LQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEG 141
           +   +LV +  +I     N +  EA+  FC +     +P  F     I+  A LG+I+ G
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60

Query: 142 KQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKK 201
           KQ+H L  K G G + FV S+L  MY+K G +    +VF+ M  KD VSW  +IDGY K 
Sbjct: 61  KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKI 120

Query: 202 GEVEVAMKLFDEMPDRDL-FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSW------- 253
           GE E A+  F +M D ++      L      CG ++  +  F R  + ++V         
Sbjct: 121 GEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACK--FGRSVHSSVVKLGFESDIF 178

Query: 254 --NAMINGYMKAGDVDSACELFD-DMEIRDLITWNSMIAGYELNGRFMEALELLETMLIG 310
             NA+ + Y KAGD++SA  +F  D E R+++++  +I GY    +  + L +   +   
Sbjct: 179 VGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQ 238

Query: 311 DVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESA 370
            + PN+ T  S + A A  A L +G  +H+ ++K  F  D  + ++L+ MY KCG +E A
Sbjct: 239 GIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQA 298

Query: 371 LTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHA 430
           +  F  I       W +++   G HG+   A+ +F +M   G+KP AITFI +L  CSHA
Sbjct: 299 IQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHA 358

Query: 431 GLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMS 490
           GLV +G  YF  M   YG+ P  EHY C++D+L R G L+EAK  I  MP  PN   W S
Sbjct: 359 GLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCS 418

Query: 491 LLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGF 550
            L   R HG+K++G+ AA  L+K+ P   G  V+LSNIYA   QW+ V  VR  M+    
Sbjct: 419 FLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNV 478

Query: 551 RKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIED 610
           +K PG S ++     H F   D SHP+   I+ KL  + +++KAAG+VP T  V L ++D
Sbjct: 479 KKLPGYSWVDVGYKTHVFGAEDWSHPRKSAIYEKLDTLLDQIKAAGYVPRTDSVPLDMDD 538

Query: 611 QKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVR 670
              KE  L  HSER+A+AF LI++    PI + KNLRVC DCHS  K +S +  R+IIVR
Sbjct: 539 SM-KEKLLHRHSERIAVAFALISMPIGKPIIVKKNLRVCVDCHSAIKFISKVTGRKIIVR 597

Query: 671 DNSRFHHFKNGSCSCKDFW 689
           DNSRFHHF +GSCSC D+W
Sbjct: 598 DNSRFHHFTDGSCSCGDYW 616



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 128/268 (47%), Gaps = 12/268 (4%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           + +H+  VK        + + L  +Y      ++  A ++F    +  ++V Y  LI  Y
Sbjct: 162 RSVHSSVVKLGFESDIFVGNALTDMY--SKAGDMESASNVFGIDSECRNVVSYTCLIDGY 219

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
           V  ++  + L++F +L  + + P+ FT   +IK  A   A+++G Q+H  V K+ F  D 
Sbjct: 220 VETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDP 279

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
           FV S LV MY K G ++   + FD + D   ++WN L+  + + G  + A+K+F+ M DR
Sbjct: 280 FVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDR 339

Query: 218 ----DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLV-----SWNAMINGYMKAGDVDS 268
               +  ++  L+ G S  G VE   + FY M     V      ++ +I+   +AG +  
Sbjct: 340 GVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKE 399

Query: 269 ACELFDDMEIR-DLITWNSMIAGYELNG 295
           A E  + M    +   W S +    ++G
Sbjct: 400 AKEFINRMPFEPNAFGWCSFLGACRIHG 427


>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Glycine max]
          Length = 820

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 234/630 (37%), Positives = 371/630 (58%), Gaps = 16/630 (2%)

Query: 70  NLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVI 129
           ++  AR +FD+ +QH +LV + L+I  Y       +A+ LFC LL     PD FTL  ++
Sbjct: 197 DIQSARMVFDK-MQHKNLVTWTLMITRYSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLL 255

Query: 130 KGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLV 189
                L     GKQ+H  V + G   D FV  +LV MYAK   ++  R++F+ M   +++
Sbjct: 256 SACVELEFFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHHNVM 315

Query: 190 SWNCLIDGYVKKGEVEVAMKLFDEM----PDRDLFSWTCLVDGFSKCGKVEIAREIFYRM 245
           SW  LI GYV+  + + A+KLF  M       + F+++ ++   +      I +++  + 
Sbjct: 316 SWTALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGIGKQLHGQT 375

Query: 246 PNRNLVS----WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEAL 301
               L +     N++IN Y ++G ++ A + F+ +  ++LI++N+     + N + +++ 
Sbjct: 376 IKLGLSTINCVGNSLINMYARSGTMECARKAFNILFEKNLISYNT---AADANAKALDSD 432

Query: 302 ELL--ETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQ 359
           E    E    G V  +  T    LS  A +  + KG  +H+ IVK+GF  +  +   LI 
Sbjct: 433 ESFNHEVEHTG-VGASPFTYACLLSGAACIGTIVKGEQIHALIVKSGFGTNLCINNALIS 491

Query: 360 MYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAIT 419
           MYSKCG+ E+AL VF  +  + V  WT++I G   HG AT+AL+LF +M  +G+KP  +T
Sbjct: 492 MYSKCGNKEAALQVFNDMGYRNVITWTSIISGFAKHGFATKALELFYEMLEIGVKPNEVT 551

Query: 420 FIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM 479
           +I VL+ACSH GL+++  ++FN M  ++ I P +EHY C+VD+L R+G L EA   I SM
Sbjct: 552 YIAVLSACSHVGLIDEAWKHFNSMHYNHSISPRMEHYACMVDLLGRSGLLLEAIEFINSM 611

Query: 480 PMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVS 539
           P   + ++W + L   R H N  +GE+AA  +++  P     Y++LSN+YA+ G+WD V+
Sbjct: 612 PFDADALVWRTFLGSCRVHRNTKLGEHAAKKILEREPHDPATYILLSNLYASEGRWDDVA 671

Query: 540 EVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVP 599
            +R+ MK++   K+ G S IE    +H+F VGD SHPQ  +I+ +L E+  K+K  G++P
Sbjct: 672 ALRKSMKQKKLIKETGYSWIEVDNQVHKFHVGDTSHPQARKIYDELDELALKIKNLGYIP 731

Query: 600 DTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLL 659
           +T  VL  +ED+ +KE  L  HSE++A+A+ LI+     PIR+ KNLRVC DCH+  K +
Sbjct: 732 NTDFVLHDVEDE-QKEQYLFQHSEKIAVAYALISTPKPKPIRVFKNLRVCGDCHTAIKYI 790

Query: 660 SGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           S +  REI+VRD +RFHH K+G CSC D+W
Sbjct: 791 SIVTGREIVVRDANRFHHIKDGKCSCNDYW 820



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 99/362 (27%), Positives = 173/362 (47%), Gaps = 18/362 (4%)

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD--D 185
           ++K   R G ++ GK +H  +   G   D  +L+SL+++Y+K G+ +    +F  M    
Sbjct: 45  LLKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNSLITLYSKCGDWENALSIFRNMGHHK 104

Query: 186 KDLVSWNCLIDGYVKKGEVEVAMKLFDEM---------PDRDLFSW---TCLVDGFSKCG 233
           +DLVSW+ +I  +        A+  F  M         P+   F+    +C    F   G
Sbjct: 105 RDLVSWSAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFTTG 164

Query: 234 KVEIAREIFYRMPNRNLVSWNAMINGYMKAG-DVDSACELFDDMEIRDLITWNSMIAGYE 292
               A  +     + ++    A+I+ + K G D+ SA  +FD M+ ++L+TW  MI  Y 
Sbjct: 165 LAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMITRYS 224

Query: 293 LNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV 352
             G   +A++L   +L+ +  P+  TL S LSA   L   + G+ +HS+++++G   D  
Sbjct: 225 QLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSACVELEFFSLGKQLHSWVIRSGLASDVF 284

Query: 353 LGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG 412
           +G  L+ MY+K  ++E++  +F  +    V  WTA+I G        +A+ LF  M    
Sbjct: 285 VGCTLVDMYAKSAAVENSRKIFNTMLHHNVMSWTALISGYVQSRQEQEAIKLFCNMLHGH 344

Query: 413 MKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYG-CLVDILCRTGYLEE 471
           + P   TF  VL AC+       G++     I   G+  TI   G  L+++  R+G +E 
Sbjct: 345 VTPNCFTFSSVLKACASLPDFGIGKQLHGQTIK-LGLS-TINCVGNSLINMYARSGTMEC 402

Query: 472 AK 473
           A+
Sbjct: 403 AR 404



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 141/300 (47%), Gaps = 15/300 (5%)

Query: 207 AMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNL----VSWNAMINGYMK 262
           A+   D      L   + L+    + G +E+ + + +++ +  L    V  N++I  Y K
Sbjct: 27  AISRLDLTTTSPLIKSSLLLKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNSLITLYSK 86

Query: 263 AGDVDSACELFDDM--EIRDLITWNSMIAGYELNGRFMEALELLETMLIGD---VLPNDA 317
            GD ++A  +F +M    RDL++W+++I+ +  N     AL     ML      + PN+ 
Sbjct: 87  CGDWENALSIFRNMGHHKRDLVSWSAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEY 146

Query: 318 TLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV-LGTLLIQMYSKCG-SIESALTVFR 375
              + L + +       G  + ++++K G+    V +G  LI M++K G  I+SA  VF 
Sbjct: 147 CFTALLRSCSNPLFFTTGLAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSARMVFD 206

Query: 376 AISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVND 435
            +  K +  WT MI      G+   A+DLF ++      P   T   +L+AC      + 
Sbjct: 207 KMQHKNLVTWTLMITRYSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSACVELEFFSL 266

Query: 436 GRRYFNMMINDYGIEPTIEHYGC-LVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG 494
           G++  + +I   G+   +   GC LVD+  ++  +E ++    +M +  N + W +L+SG
Sbjct: 267 GKQLHSWVIRS-GLASDV-FVGCTLVDMYAKSAAVENSRKIFNTM-LHHNVMSWTALISG 323


>gi|222622350|gb|EEE56482.1| hypothetical protein OsJ_05706 [Oryza sativa Japonica Group]
          Length = 799

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 268/723 (37%), Positives = 391/723 (54%), Gaps = 87/723 (12%)

Query: 33  THKETQQLHA-LSVKTNLIYHSGISSRLLSLYV---DPHINNLHYARSIFDRILQHPSLV 88
           T ++  +LHA L+   +L+ H   +  LL+  V   +PH  +L YA  +FDR+   PS  
Sbjct: 11  TVRQAAELHARLTTSGHLLLHPPSARHLLNSLVNCLEPHPLHLRYALHLFDRM--PPSTF 68

Query: 89  LYNLLIK-CYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIK---GAARLGAIKEGKQI 144
           L++  ++ C       H    LF  +    + PD FT   + K    ++R  ++     +
Sbjct: 69  LFDTALRACSRAGSDPHRPFLLFRRMRRAGVRPDGFTFHFLFKCSSSSSRPHSLLLCTML 128

Query: 145 HGLVFKLGF-GFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD---------------- 187
           H    +        FV +SL+ MY + G     RR FD +  KD                
Sbjct: 129 HAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGM 188

Query: 188 ---------------LVSWNCLIDGYVKKGEVEVAMKLFDEM------PD---------- 216
                          ++SW  LI  Y +      A+  F  M      PD          
Sbjct: 189 LCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSA 248

Query: 217 ----------RDLFSWT-------------CLVDGFSKCGKVEIAREIF---YRMPNRNL 250
                     R L                  L+D ++KCG    A+++F    R P    
Sbjct: 249 CAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQ- 307

Query: 251 VSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIG 310
            SWNA+I+GY K G VD A  LFD+ME+RD+IT+NSM+ GY  +G+  EAL L  +M   
Sbjct: 308 -SWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRH 366

Query: 311 DVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESA 370
           D+  ++ T+V+ L+A A L  L +GR +H+ I +     D  LGT L+ MY KCG ++ A
Sbjct: 367 DLRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEA 426

Query: 371 LTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHA 430
             VF+ + K+ V  WTAMI GL  +GM   AL+ F +M   G +P ++++I VL ACSH+
Sbjct: 427 TIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTACSHS 486

Query: 431 GLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMS 490
            L+N+GR YF+ M   Y I P IEHYGC++D+L R+G L+EA   +++MP++PN VIW S
Sbjct: 487 CLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQPNAVIWAS 546

Query: 491 LLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGF 550
           +LS  R H + D+ + AA +L+K+ PD  G YV L NIY  + QW+  S++R +M++R  
Sbjct: 547 ILSACRVHKHIDLAQCAAEHLLKLEPDEDGVYVQLYNIYIDSRQWENASKIRMLMEERQV 606

Query: 551 RKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIED 610
           +K  G SSI   G +H+FVV DKSHP+  EI + L E+ ++LK+ G+ P T+Q+ + + D
Sbjct: 607 KKTAGYSSITVAGQVHKFVVSDKSHPRILEIIAMLEEISHRLKSLGYSPLTSQITVDV-D 665

Query: 611 QKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVR 670
           ++EKE  L  HSE+LAIAFGLIN+    P+ I KNLRVC DCHS  KL+S ++NREIIVR
Sbjct: 666 EEEKEQALLAHSEKLAIAFGLINLAPNLPVHIRKNLRVCEDCHSAIKLISRLWNREIIVR 725

Query: 671 DNS 673
           D S
Sbjct: 726 DRS 728


>gi|110737061|dbj|BAF00484.1| hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 233/579 (40%), Positives = 345/579 (59%), Gaps = 36/579 (6%)

Query: 142 KQIHGLVFKLGFGFDK---FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGY 198
           KQ+H    +  +  +    F+   ++ + + F +++   RVFD++++     WN LI   
Sbjct: 56  KQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRAC 115

Query: 199 VKK-GEVEVAMKLFDEM-------PDRDLFSWT----CLVDGFSKCGKV--EIAREIFYR 244
                  E A  L+ +M       PD+  F +       + GFS+  +V  +I +  F  
Sbjct: 116 AHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGF-- 173

Query: 245 MPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELL 304
               ++   N +I+ Y   G +D A ++FD+M  R L++WNSMI      G +  AL+L 
Sbjct: 174 --GGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLF 231

Query: 305 ETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFV---VDGVLGTLLIQMY 361
             M      P+  T+ S LSA AGL  L+ G W H+++++   V   +D ++   LI+MY
Sbjct: 232 REMQ-RSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMY 290

Query: 362 SKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMC--RMGMKPTAIT 419
            KCGS+  A  VF+ + K+ +  W AMI+G   HG A +A++ F++M   R  ++P ++T
Sbjct: 291 CKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVT 350

Query: 420 FIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM 479
           F+G+L AC+H G VN GR+YF+MM+ DY IEP +EHYGC+VD++ R GY+ EA   + SM
Sbjct: 351 FVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSM 410

Query: 480 PMRPNFVIWMSLLSGARNHGNK-DIGEYAANNLIKVAPDT-------IGCYVVLSNIYAA 531
           PM+P+ VIW SLL      G   ++ E  A N+I    D         G YV+LS +YA+
Sbjct: 411 PMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYAS 470

Query: 532 AGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNK 591
           A +W+ V  VR++M + G RK+PG SSIE  G+ HEF  GD SHPQT +I+ +L  + ++
Sbjct: 471 ASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQQLKVIDDR 530

Query: 592 LKAAGHVPDTTQV-LLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCN 650
           L++ G++PD +Q  L+   +   KE  L  HSERLAIAFGLIN+  ++PIRI KNLRVCN
Sbjct: 531 LRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQTPIRIFKNLRVCN 590

Query: 651 DCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           DCH VTKL+S ++N EIIVRD  RFHHFK+GSCSC D+W
Sbjct: 591 DCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 629



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 128/478 (26%), Positives = 196/478 (41%), Gaps = 122/478 (25%)

Query: 12  IHALQQHLPS----------RLHWNILKFSST---HKETQQLHALSVKTNLIYHSGISSR 58
           +H L  H+P             H  I   + T     + +QLHA +++T   Y    ++ 
Sbjct: 17  VHPLSPHIPPASSPSASTAGNHHQRIFSLAETCSDMSQLKQLHAFTLRTT--YPEEPATL 74

Query: 59  LLS---LYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLD 115
            L    L +    ++++YA  +FD I  H S +   L+  C     R  EA  L+  +L+
Sbjct: 75  FLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLE 134

Query: 116 RF-LLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEID 174
           R    PD  T P V+K  A +    EGKQ+H  + K GFG D +V + L+ +Y   G +D
Sbjct: 135 RGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLD 194

Query: 175 LGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM-----PD------------- 216
           L R+VFD M ++ LVSWN +ID  V+ GE + A++LF EM     PD             
Sbjct: 195 LARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQRSFEPDGYTMQSVLSACAG 254

Query: 217 -----------------------RDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSW 253
                                   D+     L++ + KCG + +A ++F  M  R+L SW
Sbjct: 255 LGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASW 314

Query: 254 NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL 313
           NAMI G+   G  + A   FD                     R ++  E        +V 
Sbjct: 315 NAMILGFATHGRAEEAMNFFD---------------------RMVDKRE--------NVR 345

Query: 314 PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTV 373
           PN  T V  L A      +NKGR     +V++                     IE AL  
Sbjct: 346 PNSVTFVGLLIACNHRGFVNKGRQYFDMMVRD-------------------YCIEPALE- 385

Query: 374 FRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAG 431
                     H+  ++  +   G  T+A+D+   +  M MKP A+ +  +L+AC   G
Sbjct: 386 ----------HYGCIVDLIARAGYITEAIDM---VMSMPMKPDAVIWRSLLDACCKKG 430


>gi|8778758|gb|AAF79766.1|AC009317_25 T30E16.32 [Arabidopsis thaliana]
          Length = 695

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 233/579 (40%), Positives = 345/579 (59%), Gaps = 36/579 (6%)

Query: 142 KQIHGLVFKLGFGFDK---FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGY 198
           KQ+H    +  +  +    F+   ++ + + F +++   RVFD++++     WN LI   
Sbjct: 122 KQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRAC 181

Query: 199 VKK-GEVEVAMKLFDEM-------PDRDLFSWT----CLVDGFSKCGKV--EIAREIFYR 244
                  E A  L+ +M       PD+  F +       + GFS+  +V  +I +  F  
Sbjct: 182 AHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGF-- 239

Query: 245 MPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELL 304
               ++   N +I+ Y   G +D A ++FD+M  R L++WNSMI      G +  AL+L 
Sbjct: 240 --GGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLF 297

Query: 305 ETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFV---VDGVLGTLLIQMY 361
             M      P+  T+ S LSA AGL  L+ G W H+++++   V   +D ++   LI+MY
Sbjct: 298 REMQ-RSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMY 356

Query: 362 SKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMC--RMGMKPTAIT 419
            KCGS+  A  VF+ + K+ +  W AMI+G   HG A +A++ F++M   R  ++P ++T
Sbjct: 357 CKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVT 416

Query: 420 FIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM 479
           F+G+L AC+H G VN GR+YF+MM+ DY IEP +EHYGC+VD++ R GY+ EA   + SM
Sbjct: 417 FVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSM 476

Query: 480 PMRPNFVIWMSLLSGARNHGNK-DIGEYAANNLIKVAPDT-------IGCYVVLSNIYAA 531
           PM+P+ VIW SLL      G   ++ E  A N+I    D         G YV+LS +YA+
Sbjct: 477 PMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYAS 536

Query: 532 AGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNK 591
           A +W+ V  VR++M + G RK+PG SSIE  G+ HEF  GD SHPQT +I+ +L  + ++
Sbjct: 537 ASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQQLKVIDDR 596

Query: 592 LKAAGHVPDTTQV-LLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCN 650
           L++ G++PD +Q  L+   +   KE  L  HSERLAIAFGLIN+  ++PIRI KNLRVCN
Sbjct: 597 LRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQTPIRIFKNLRVCN 656

Query: 651 DCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           DCH VTKL+S ++N EIIVRD  RFHHFK+GSCSC D+W
Sbjct: 657 DCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 695



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 122/452 (26%), Positives = 191/452 (42%), Gaps = 109/452 (24%)

Query: 25  WNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLS---LYVDPHINNLHYARSIFDRI 81
           +++ +  S   + +QLHA +++T   Y    ++  L    L +    ++++YA  +FD I
Sbjct: 109 FSLAETCSDMSQLKQLHAFTLRTT--YPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSI 166

Query: 82  LQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRF-LLPDNFTLPCVIKGAARLGAIKE 140
             H S +   L+  C     R  EA  L+  +L+R    PD  T P V+K  A +    E
Sbjct: 167 ENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSE 226

Query: 141 GKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVK 200
           GKQ+H  + K GFG D +V + L+ +Y   G +DL R+VFD M ++ LVSWN +ID  V+
Sbjct: 227 GKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVR 286

Query: 201 KGEVEVAMKLFDEM-----PD------------------------------------RDL 219
            GE + A++LF EM     PD                                     D+
Sbjct: 287 FGEYDSALQLFREMQRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDV 346

Query: 220 FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIR 279
                L++ + KCG + +A ++F  M  R+L SWNAMI G+   G  + A   FD     
Sbjct: 347 LVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFD----- 401

Query: 280 DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMH 339
                           R ++  E        +V PN  T V  L A      +NKGR   
Sbjct: 402 ----------------RMVDKRE--------NVRPNSVTFVGLLIACNHRGFVNKGRQYF 437

Query: 340 SYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMAT 399
             +V++                     IE AL            H+  ++  +   G  T
Sbjct: 438 DMMVRD-------------------YCIEPALE-----------HYGCIVDLIARAGYIT 467

Query: 400 QALDLFNKMCRMGMKPTAITFIGVLNACSHAG 431
           +A+D+   +  M MKP A+ +  +L+AC   G
Sbjct: 468 EAIDM---VMSMPMKPDAVIWRSLLDACCKKG 496


>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Brachypodium distachyon]
          Length = 796

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 251/671 (37%), Positives = 369/671 (54%), Gaps = 22/671 (3%)

Query: 31  SSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLY 90
           S+     + LHAL+V +     + ++S L  LY    ++  + AR +FD +   P  VL+
Sbjct: 136 SAASAALRPLHALAVASGFAADNFVASALAKLYFT--LSRGNDARKVFDAV-PSPDTVLW 192

Query: 91  NLLIKCYVFNQRSHEALTLFCDLLDR-FLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVF 149
           N L+          EAL  F  +     + PD+ TL  V+  AA +     G+ +H    
Sbjct: 193 NTLLA----GLSGSEALEAFVRMAGAGSVRPDSTTLASVLPAAAEVANTTMGRCVHAFGE 248

Query: 150 KLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMK 209
           K G    + V++ L+S+YAK G+++  R +FD M+  DLV++N LI GY   G V  +++
Sbjct: 249 KCGLAQHEHVVTGLISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGMVGSSVE 308

Query: 210 LFDEMPDRDL----FSWTCLVDGFSKCGKVEIA----REIFYRMPNRNLVSWNAMINGYM 261
           LF E+    L     +   L+   S  G   +A      +     + N     A+   Y 
Sbjct: 309 LFKELVGMGLRPSSSTLVALIPVHSPFGHEPLAGCLHAHVVKAGLDANAPVSTALTTLYC 368

Query: 262 KAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVS 321
           +  D+DSA   FD M  + + +WN+MI+GY  NG    A+ L + M   +V PN  T+ S
Sbjct: 369 RFNDMDSARRAFDAMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALNVRPNPLTISS 428

Query: 322 ALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKK 381
           ALSA A L  L+ G+W+H  I      ++  + T LI MY KCGSI  A  +F ++  K 
Sbjct: 429 ALSACAQLGALSLGKWVHKIIANEKLELNVYVMTALIDMYVKCGSIAEARCIFDSMDNKN 488

Query: 382 VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFN 441
           V  W  MI G G+HG   +AL L+  M    + PT+ TF+ VL ACSH GLV +G   F 
Sbjct: 489 VVSWNVMISGYGLHGQGAEALKLYKDMMDAHLHPTSSTFLSVLYACSHGGLVKEGTTVFR 548

Query: 442 MMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP---MRPNFVIWMSLLSGARNH 498
            M +DYGI P IEH  C+VD+L R G L+EA   I   P   + P   IW +LL     H
Sbjct: 549 SMTSDYGITPGIEHCTCMVDLLGRAGQLKEAFELISEFPKSAVGPG--IWGALLGACMVH 606

Query: 499 GNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSS 558
            + D+ + A+  L ++ P+  G YV+LSN+Y +  Q+ + + VR+  K R   K PG + 
Sbjct: 607 KDGDLAKLASQKLFELEPENTGYYVLLSNLYTSKKQYSEAAVVRQEAKSRKLVKTPGCTL 666

Query: 559 IEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAEL 618
           IE     H F+ GD++HPQ+D I+  L ++  K+  AG+ PDT   L  +E++ EKE  +
Sbjct: 667 IEIGDRPHVFMAGDRAHPQSDAIYLYLEKLTAKMIEAGYRPDTEAALYDVEEE-EKEHMV 725

Query: 619 ENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHF 678
           + HSE+LAIAFGL+N +  + IRI+KNLRVC DCH+ TK++S +  R I+VRD SRFHHF
Sbjct: 726 KVHSEKLAIAFGLLNTEPGTEIRIIKNLRVCLDCHNATKIISKVTQRLIVVRDASRFHHF 785

Query: 679 KNGSCSCKDFW 689
           ++G CSC D+W
Sbjct: 786 RDGVCSCGDYW 796


>gi|357142905|ref|XP_003572732.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Brachypodium distachyon]
          Length = 669

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 239/567 (42%), Positives = 333/567 (58%), Gaps = 23/567 (4%)

Query: 141 GKQIHGLVFKLG-FGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYV 199
           G+Q+H L  + G F  D F  S+L+ MY         R+ FD +   + V    +  GYV
Sbjct: 108 GRQLHLLAIRSGLFPSDPFSASALLHMYNHCSRPIDARKAFDEIPSPNPVIITAMASGYV 167

Query: 200 KKGEVEVAMKLF------------DEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMP- 246
           +   V  ++ LF            DE      FS +  +     CG       +  +   
Sbjct: 168 RNNLVYPSLALFRKLIASGSATAVDEAAALVAFSASARI---PDCGITSSLHALVVKTGL 224

Query: 247 NRNLVSWNAMINGYMKAG--DVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELL 304
           + +    N M++ Y K G  D+ +A ++FD ME +D+++WNSMIA Y  NG   +AL L 
Sbjct: 225 DGDAGVVNTMLDAYAKGGRRDLGAARKVFDTME-KDVVSWNSMIALYAQNGMSADALGLY 283

Query: 305 ETML--IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYS 362
             ML   G +  N  TL + L A A    +  G+ +H+ +V+ G   +  +GT ++ MYS
Sbjct: 284 RKMLNVSGSIKCNAVTLSAILLACAHAGTIQTGKCIHNQVVRMGLEENVYVGTSVVDMYS 343

Query: 363 KCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIG 422
           KCG +E A   F+ I +K +  W+AMI G GMHG   +ALD+FN+MCR G  P  ITFI 
Sbjct: 344 KCGRVEMARKAFQKIKEKNILSWSAMITGYGMHGHGQEALDIFNEMCRSGQNPNYITFIS 403

Query: 423 VLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMR 482
           VL ACSHAGL++ GR ++N M   +GIEP +EHYGC+VD+L R G L+EA   I+ M ++
Sbjct: 404 VLAACSHAGLLDKGRYWYNAMKKRFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVK 463

Query: 483 PNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVR 542
           P+  IW +LLS  R H N ++ E +A  L ++     G YV+LSNIYA AG W  V  +R
Sbjct: 464 PDAAIWGALLSACRIHKNVELAEISAKRLFELDATNCGYYVLLSNIYAEAGMWKDVERMR 523

Query: 543 EMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTT 602
            ++K RG  K PG SS+E +G  H F VGDKSHPQ  EI+S L ++  K++ AG+VP+T 
Sbjct: 524 VLVKTRGIEKPPGYSSVELKGRTHLFYVGDKSHPQHKEIYSYLGKLLEKMQEAGYVPNTG 583

Query: 603 QVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGI 662
            VL  + D++EK + L  HSE+LAIAF L+N    S I ++KNLRVC DCH+  KL++ I
Sbjct: 584 SVLHDL-DEEEKASALHIHSEKLAIAFALMNSVPGSVIHVIKNLRVCTDCHTAIKLITKI 642

Query: 663 YNREIIVRDNSRFHHFKNGSCSCKDFW 689
             REIIVRD  RFHHFK+GSCSC D+W
Sbjct: 643 AQREIIVRDLQRFHHFKDGSCSCGDYW 669



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 97/374 (25%), Positives = 180/374 (48%), Gaps = 19/374 (5%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +QLH L++++ L      S+  L L++  H +    AR  FD I   P+ V+   +   Y
Sbjct: 109 RQLHLLAIRSGLFPSDPFSASAL-LHMYNHCSRPIDARKAFDEI-PSPNPVIITAMASGY 166

Query: 98  VFNQRSHEALTLFCDLL--DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF 155
           V N   + +L LF  L+        D          +AR+        +H LV K G   
Sbjct: 167 VRNNLVYPSLALFRKLIASGSATAVDEAAALVAFSASARIPDCGITSSLHALVVKTGLDG 226

Query: 156 DKFVLSSLVSMYAKFGEIDLG--RRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDE 213
           D  V+++++  YAK G  DLG  R+VFD M+ KD+VSWN +I  Y + G    A+ L+ +
Sbjct: 227 DAGVVNTMLDAYAKGGRRDLGAARKVFDTME-KDVVSWNSMIALYAQNGMSADALGLYRK 285

Query: 214 MPDR------DLFSWTCLVDGFSKCGKVEIAREI---FYRMP-NRNLVSWNAMINGYMKA 263
           M +       +  + + ++   +  G ++  + I     RM    N+    ++++ Y K 
Sbjct: 286 MLNVSGSIKCNAVTLSAILLACAHAGTIQTGKCIHNQVVRMGLEENVYVGTSVVDMYSKC 345

Query: 264 GDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSAL 323
           G V+ A + F  ++ +++++W++MI GY ++G   EAL++   M      PN  T +S L
Sbjct: 346 GRVEMARKAFQKIKEKNILSWSAMITGYGMHGHGQEALDIFNEMCRSGQNPNYITFISVL 405

Query: 324 SAVAGLAVLNKGRWMHSYIVKNGFVVDGVLG-TLLIQMYSKCGSIESALTVFRAIS-KKK 381
           +A +   +L+KGR+ ++ + K   +  GV     ++ +  + G ++ A  + + +  K  
Sbjct: 406 AACSHAGLLDKGRYWYNAMKKRFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPD 465

Query: 382 VGHWTAMIVGLGMH 395
              W A++    +H
Sbjct: 466 AAIWGALLSACRIH 479



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 137/266 (51%), Gaps = 14/266 (5%)

Query: 37  TQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKC 96
           T  LHAL VKT L   +G+ + +L  Y      +L  AR +FD + +   +V +N +I  
Sbjct: 212 TSSLHALVVKTGLDGDAGVVNTMLDAYAKGGRRDLGAARKVFDTMEK--DVVSWNSMIAL 269

Query: 97  YVFNQRSHEALTLFCDLLD--RFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
           Y  N  S +AL L+  +L+    +  +  TL  ++   A  G I+ GK IH  V ++G  
Sbjct: 270 YAQNGMSADALGLYRKMLNVSGSIKCNAVTLSAILLACAHAGTIQTGKCIHNQVVRMGLE 329

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
            + +V +S+V MY+K G +++ R+ F  + +K+++SW+ +I GY   G  + A+ +F+EM
Sbjct: 330 ENVYVGTSVVDMYSKCGRVEMARKAFQKIKEKNILSWSAMITGYGMHGHGQEALDIFNEM 389

Query: 215 ----PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR-----NLVSWNAMINGYMKAGD 265
                + +  ++  ++   S  G ++  R  +  M  R      +  +  M++   +AG 
Sbjct: 390 CRSGQNPNYITFISVLAACSHAGLLDKGRYWYNAMKKRFGIEPGVEHYGCMVDLLGRAGC 449

Query: 266 VDSACELFDDMEIR-DLITWNSMIAG 290
           +D A  L  +M+++ D   W ++++ 
Sbjct: 450 LDEAYGLIKEMKVKPDAAIWGALLSA 475


>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
          Length = 541

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 226/518 (43%), Positives = 318/518 (61%), Gaps = 22/518 (4%)

Query: 191 WNCLIDGYVK-----KGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKCGKVEIAR 239
           WN LI  +V+      G     + +F  M      PD   F +  L+  F+    + + R
Sbjct: 27  WNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPF--LLQSFASPSLLHLGR 84

Query: 240 EIFYRMPNRNLV----SWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNG 295
            +  ++    L        ++I+ Y  +G VD A  LF  M  R++I+W+ MI GY   G
Sbjct: 85  SVHAQILRFGLAIDPFVQTSLISMYSSSGLVDMARNLFAVMPERNVISWSCMINGYVRCG 144

Query: 296 RFMEALELLETML---IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV 352
           ++ EAL L   M    + DV PN+ T+   L+A   L  L  G+W H+YI K G  VD V
Sbjct: 145 QYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVV 204

Query: 353 LGTLLIQMYSKCGSIESALTVFRAISKKK-VGHWTAMIVGLGMHGMATQALDLFNKMCRM 411
           LGT LI MY+KCGS+E A  VF  +   K V  W+AMI GL MHG+A + + LF+KM   
Sbjct: 205 LGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQ 264

Query: 412 GMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEE 471
           G++P A+TF+ V  AC H GLV++G+ Y   M  DY I PTI+HYGC+VD+  R G ++E
Sbjct: 265 GVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKE 324

Query: 472 AKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAA 531
           A + ++SMPM P+ ++W +LLSG+R HG+ +  E A   LI++ P   G YV+LSN+YA 
Sbjct: 325 AWNVVKSMPMEPDVLVWGALLSGSRMHGDIETCELALKKLIELEPTNSGAYVLLSNVYAK 384

Query: 532 AGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNK 591
            G+W+ V  VR++M+  G +K PG S IE  GVLHEF VGD SHP+T +IH  L E+  +
Sbjct: 385 RGRWEDVRHVRDLMETMGIKKVPGCSLIEVGGVLHEFFVGDDSHPETRQIHMMLEEILER 444

Query: 592 LKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCND 651
           LK  G+V +T +VLL + D++ KE  L  HSE+LA+A+G +     +PIRIVKNLR+C D
Sbjct: 445 LKVEGYVGNTKEVLLDL-DEEGKELALSLHSEKLALAYGFLKTSPGTPIRIVKNLRICRD 503

Query: 652 CHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           CH   K++S +++REIIVRD +RFHHF  G CSC+D+W
Sbjct: 504 CHVAIKMISKVFDREIIVRDCNRFHHFTQGLCSCRDYW 541



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/339 (25%), Positives = 173/339 (51%), Gaps = 27/339 (7%)

Query: 82  LQHPSL--VLYNLLIKCYVFNQR-----SHEALTLFCDLLDRFLLPDNFTLPCVIKGAAR 134
             HP+L   L+N LI+ +V  +      +H  +++F  +    + PD  T P +++  A 
Sbjct: 17  FSHPTLESFLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFAS 76

Query: 135 LGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCL 194
              +  G+ +H  + + G   D FV +SL+SMY+  G +D+ R +F  M +++++SW+C+
Sbjct: 77  PSLLHLGRSVHAQILRFGLAIDPFVQTSLISMYSSSGLVDMARNLFAVMPERNVISWSCM 136

Query: 195 IDGYVKKGEVEVAMKLFDEM---------PDRDLFSWTCLVDGFSKCGKVEIAREIFYR- 244
           I+GYV+ G+ + A+ LF EM         P+   F+ + ++    + G +E  +      
Sbjct: 137 INGYVRCGQYKEALALFREMQMLGVNDVRPNE--FTMSGVLAACGRLGALEHGKWAHAYI 194

Query: 245 ----MPNRNLVSWNAMINGYMKAGDVDSACELFDDM-EIRDLITWNSMIAGYELNGRFME 299
               MP  ++V   A+I+ Y K G V+ A  +F ++   +D++ W++MI+G  ++G   E
Sbjct: 195 DKCGMPV-DVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEE 253

Query: 300 ALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLG-TLLI 358
            + L   M+   V PN  T ++   A     ++++G+     + ++  ++  +     ++
Sbjct: 254 CVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMV 313

Query: 359 QMYSKCGSIESALTVFRAIS-KKKVGHWTAMIVGLGMHG 396
            +Y + G I+ A  V +++  +  V  W A++ G  MHG
Sbjct: 314 DLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHG 352


>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Glycine max]
          Length = 1116

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 215/475 (45%), Positives = 310/475 (65%), Gaps = 5/475 (1%)

Query: 218 DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDME 277
           D F  T L++ +S CG    AR+ F  +   +L SWNA+I+   KAG +  A +LFD M 
Sbjct: 94  DPFVQTSLINMYSSCGTPTFARQAFDEITQPDLPSWNAIIHANAKAGMIHIARKLFDQMP 153

Query: 278 IRDLITWNSMIAGYELNGRFMEALEL---LETMLIGDVLPNDATLVSALSAVAGLAVLNK 334
            +++I+W+ MI GY   G +  AL L   L+T+    + PN+ T+ S LSA A L  L  
Sbjct: 154 EKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEFTMSSVLSACARLGALQH 213

Query: 335 GRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKK-VGHWTAMIVGLG 393
           G+W+H+YI K G  +D VLGT LI MY+KCGSIE A  +F  +  +K V  W+AMI    
Sbjct: 214 GKWVHAYIDKTGMKIDVVLGTSLIDMYAKCGSIERAKCIFDNLGPEKDVMAWSAMITAFS 273

Query: 394 MHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTI 453
           MHG++ + L+LF +M   G++P A+TF+ VL AC H GLV++G  YF  M+N+YG+ P I
Sbjct: 274 MHGLSEECLELFARMVNDGVRPNAVTFVAVLCACVHGGLVSEGNEYFKRMMNEYGVSPMI 333

Query: 454 EHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIK 513
           +HYGC+VD+  R G +E+A + ++SMPM P+ +IW +LL+GAR HG+ +  E A   L++
Sbjct: 334 QHYGCMVDLYSRAGRIEDAWNVVKSMPMEPDVMIWGALLNGARIHGDVETCEIAITKLLE 393

Query: 514 VAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDK 573
           + P     YV+LSN+YA  G+W +V  +R++M+ RG +K PG S +E  GV+ EF  GD 
Sbjct: 394 LDPANSSAYVLLSNVYAKLGRWREVRHLRDLMEVRGIKKLPGCSLVEVDGVIREFFAGDN 453

Query: 574 SHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLIN 633
           SHP+   ++  L E+  +L+  G+  +T +VLL + D++ KE  L  HSE+LAIA+  + 
Sbjct: 454 SHPELLNLYVMLDEIMKRLEKHGYERNTGEVLLDL-DEEGKEFALSLHSEKLAIAYCFLR 512

Query: 634 VKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDF 688
               + IRIVKNLR+C+DCH   K++S  +NREIIVRD +RFHHFKNG CSCKD+
Sbjct: 513 TSPGTTIRIVKNLRICSDCHVAIKIISKEFNREIIVRDCNRFHHFKNGLCSCKDY 567



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 104/375 (27%), Positives = 176/375 (46%), Gaps = 69/375 (18%)

Query: 84  HPSLVLYNLLIKCYVFNQ------RSH-------EALTLFCDLLDRFLLPDNFTLPCVIK 130
           HPSL L +  I+ +V+N       RS         AL+L+  +    +LPD  T P +++
Sbjct: 12  HPSLHLSHPNIESFVWNNLIRASTRSRVQNPAFPPALSLYLRMRLHAVLPDLHTFPFLLQ 71

Query: 131 GAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVS 190
               +     G+Q+H  +  LG   D FV +SL++MY+  G     R+ FD +   DL S
Sbjct: 72  S---INTPHRGRQLHAQILLLGLANDPFVQTSLINMYSSCGTPTFARQAFDEITQPDLPS 128

Query: 191 WNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM----- 245
           WN +I    K G + +A KLFD+MP++++ SW+C++ G+  CG+ + A  +F  +     
Sbjct: 129 WNAIIHANAKAGMIHIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEG 188

Query: 246 ----PNRNLVS----------------W-----------------NAMINGYMKAGDVDS 268
               PN   +S                W                  ++I+ Y K G ++ 
Sbjct: 189 SQLRPNEFTMSSVLSACARLGALQHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCGSIER 248

Query: 269 ACELFDDM-EIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVA 327
           A  +FD++   +D++ W++MI  + ++G   E LEL   M+   V PN  T V+ L A  
Sbjct: 249 AKCIFDNLGPEKDVMAWSAMITAFSMHGLSEECLELFARMVNDGVRPNAVTFVAVLCACV 308

Query: 328 GLAVLNKG-----RWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS-KKK 381
              ++++G     R M+ Y V       G     ++ +YS+ G IE A  V +++  +  
Sbjct: 309 HGGLVSEGNEYFKRMMNEYGVSPMIQHYGC----MVDLYSRAGRIEDAWNVVKSMPMEPD 364

Query: 382 VGHWTAMIVGLGMHG 396
           V  W A++ G  +HG
Sbjct: 365 VMIWGALLNGARIHG 379



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 148/296 (50%), Gaps = 21/296 (7%)

Query: 71  LHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLD---RFLLPDNFTLPC 127
           +H AR +FD++ +  +++ ++ +I  YV       AL+LF  L       L P+ FT+  
Sbjct: 142 IHIARKLFDQMPEK-NVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEFTMSS 200

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAM-DDK 186
           V+   ARLGA++ GK +H  + K G   D  + +SL+ MYAK G I+  + +FD +  +K
Sbjct: 201 VLSACARLGALQHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCGSIERAKCIFDNLGPEK 260

Query: 187 DLVSWNCLIDGYVKKGEVEVAMKLFDEMPD----RDLFSWTCLVDGFSKCGKVEIAREIF 242
           D+++W+ +I  +   G  E  ++LF  M +     +  ++  ++      G V    E F
Sbjct: 261 DVMAWSAMITAFSMHGLSEECLELFARMVNDGVRPNAVTFVAVLCACVHGGLVSEGNEYF 320

Query: 243 YRMPNRNLVS-----WNAMINGYMKAGDVDSACELFDDMEIR-DLITWNSMIAGYELNGR 296
            RM N   VS     +  M++ Y +AG ++ A  +   M +  D++ W +++ G  ++G 
Sbjct: 321 KRMMNEYGVSPMIQHYGCMVDLYSRAGRIEDAWNVVKSMPMEPDVMIWGALLNGARIHGD 380

Query: 297 FMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV 352
            +E  E+  T L+ ++ P +++    LS V        GRW     +++   V G+
Sbjct: 381 -VETCEIAITKLL-ELDPANSSAYVLLSNVYA----KLGRWREVRHLRDLMEVRGI 430



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 105/255 (41%), Gaps = 42/255 (16%)

Query: 283 TWNSMIAGYE----LNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWM 338
            WN++I         N  F  AL L   M +  VLP+  T    L ++      ++GR +
Sbjct: 26  VWNNLIRASTRSRVQNPAFPPALSLYLRMRLHAVLPDLHTFPFLLQSIN---TPHRGRQL 82

Query: 339 HSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMA 398
           H+ I+  G   D  + T LI MYS CG+   A   F  I++  +  W A+I      GM 
Sbjct: 83  HAQILLLGLANDPFVQTSLINMYSSCGTPTFARQAFDEITQPDLPSWNAIIHANAKAGMI 142

Query: 399 TQALDLFNKM---------CRM-------------------------GMKPTAITFIGVL 424
             A  LF++M         C +                          ++P   T   VL
Sbjct: 143 HIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEFTMSSVL 202

Query: 425 NACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPN 484
           +AC+  G +  G ++ +  I+  G++  +     L+D+  + G +E AK   +++    +
Sbjct: 203 SACARLGALQHG-KWVHAYIDKTGMKIDVVLGTSLIDMYAKCGSIERAKCIFDNLGPEKD 261

Query: 485 FVIWMSLLSGARNHG 499
            + W ++++    HG
Sbjct: 262 VMAWSAMITAFSMHG 276


>gi|449438512|ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
 gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
          Length = 667

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 225/601 (37%), Positives = 351/601 (58%), Gaps = 40/601 (6%)

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD 187
           +++   +LG++  GKQ+H L+   G   DKF+ + L++ Y+K G+      +F  M  ++
Sbjct: 68  LLQSCIKLGSLFGGKQVHSLIITSGGSKDKFISNHLLNFYSKLGQFKSSLVLFSNMPRRN 127

Query: 188 LVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM-- 245
           ++S+N LI+GY++ G++E A KLFDEM +R++ +W  ++ G ++    + A  +F  M  
Sbjct: 128 VMSFNILINGYLQLGDLESAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKEMYG 187

Query: 246 ----PN--------RNLVSWNAMING-------------------------YMKAGDVDS 268
               P+        R      +++ G                         Y+K+G +  
Sbjct: 188 LGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSLSD 247

Query: 269 ACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAG 328
             +L   M IR ++ WN++IAG   NG   E L     M +    P+  T VS LSA + 
Sbjct: 248 GEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLSACSE 307

Query: 329 LAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAM 388
           LA L +G+ +H+ ++K G      + + LI MYS+ G +E ++  F       V  W++M
Sbjct: 308 LATLGQGQQIHAEVIKAGASSVLAVVSSLISMYSRSGCLEDSIKAFVDRENFDVVLWSSM 367

Query: 389 IVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYG 448
           I   G HG   +AL+LF++M  + M+   +TF+ +L ACSH+GL   G  YF++M+  Y 
Sbjct: 368 IAAYGFHGRGEEALELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYFDLMVKKYK 427

Query: 449 IEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAA 508
           ++P IEHY C+VD+L R G LEEA+  I SMP++P+ +IW +LL+  + H   ++ E  +
Sbjct: 428 LKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVQPDGIIWKTLLAACKLHKEAEMAERIS 487

Query: 509 NNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEF 568
             +IK+ P     YV+LSNI+A+A  W  VS++R+ M+ R  RK+PG S +E + ++H+F
Sbjct: 488 EEIIKLDPLDAASYVLLSNIHASARNWLNVSQIRKAMRDRSVRKEPGISWLELKNLVHQF 547

Query: 569 VVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIA 628
            +GDKSHPQ  EI   L E+ ++LK  G+VP+   VL  + D +EKE  L +HSE+ AIA
Sbjct: 548 SMGDKSHPQYFEIDLYLKELMSELKQHGYVPELGSVLHDM-DNEEKEYNLAHHSEKFAIA 606

Query: 629 FGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDF 688
           F L+N     PIR++KNLRVC+DCH+  K +S I NREIIVRD SRFHHFK+G CSC ++
Sbjct: 607 FALMNTSENVPIRVMKNLRVCDDCHNAIKCISRIRNREIIVRDASRFHHFKDGECSCGNY 666

Query: 689 W 689
           W
Sbjct: 667 W 667



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 168/350 (48%), Gaps = 21/350 (6%)

Query: 67  HINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLP 126
            + +L  A+ +FD + +  ++  +N +I      + + +AL+LF ++     LPD FTL 
Sbjct: 140 QLGDLESAQKLFDEMSER-NIATWNAMIAGLTQFEFNKQALSLFKEMYGLGFLPDEFTLG 198

Query: 127 CVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK 186
            V++G A L ++  G+++H  + K GF     V SSL  MY K G +  G ++  +M  +
Sbjct: 199 SVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSLSDGEKLIKSMPIR 258

Query: 187 DLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKCGKV----- 235
            +V+WN LI G  + G  E  +  ++ M      PD+  F     V   S C ++     
Sbjct: 259 TVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITF-----VSVLSACSELATLGQ 313

Query: 236 --EIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYEL 293
             +I  E+     +  L   +++I+ Y ++G ++ + + F D E  D++ W+SMIA Y  
Sbjct: 314 GQQIHAEVIKAGASSVLAVVSSLISMYSRSGCLEDSIKAFVDRENFDVVLWSSMIAAYGF 373

Query: 294 NGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVL 353
           +GR  EALEL   M    +  N+ T +S L A +   +  KG      +VK   +   + 
Sbjct: 374 HGRGEEALELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYFDLMVKKYKLKPRIE 433

Query: 354 G-TLLIQMYSKCGSIESALTVFRAISKKKVG-HWTAMIVGLGMHGMATQA 401
             T ++ +  + G +E A  + R++  +  G  W  ++    +H  A  A
Sbjct: 434 HYTCVVDLLGRAGRLEEAEGMIRSMPVQPDGIIWKTLLAACKLHKEAEMA 483


>gi|147818712|emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]
          Length = 1072

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 260/726 (35%), Positives = 381/726 (52%), Gaps = 74/726 (10%)

Query: 29   KFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLV 88
            K  +T     QLHA    T L  H   S++L+  Y    I     ++ +FD     P   
Sbjct: 356  KRCATSTTLTQLHAHLFITGLHRHPPASTKLIESYA--QIGIFESSKRVFD-TFPKPDSF 412

Query: 89   LYNLLIKCYVF---------------------------------------------NQRS 103
            ++ +LIKCYV+                                             N ++
Sbjct: 413  MWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKNGQA 472

Query: 104  HEALTLFCDLLDRFLLPDNFTLPCVIKGAA--------RLGAIKEGKQIHGLVFKLGFGF 155
             E L +F  ++   + PD+ T+  V +  +        RLG +KEG+ +HG V +     
Sbjct: 473  SEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRLGRVKEGRSVHGFVIRRAMDP 532

Query: 156  D-KFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
            +  F+  +L+ +YA  G +    +VF+ + +K ++SWN LI  + + G+ E A+ LF +M
Sbjct: 533  ELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQM 592

Query: 215  PDRDLFS---------WTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGD 265
              + L             C    FS+ G  +I   I  +  N N    NA+I+ Y K G 
Sbjct: 593  QTQGLMPDSYSLASSLSACGTISFSQLG-AQIHGYII-KTGNFNDFVQNALIDMYAKCGF 650

Query: 266  VDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSA 325
            V SA ++F+ ++ + L+TWNSMI G+  NG  +EA+ L + M +  V  +  T +S + A
Sbjct: 651  VHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQA 710

Query: 326  VAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHW 385
             + L  L KG+W+H  ++  G   D  L T L  MYSKCG ++ A  VF  +S++ +  W
Sbjct: 711  CSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSW 770

Query: 386  TAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN 445
            + MI G GMHG     + LFN+M   G+KP  ITF+ +L+ACSHAG V +G+ YFN M +
Sbjct: 771  SVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKLYFNSM-S 829

Query: 446  DYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGE 505
            ++G+EP  +H+ C+VD+L R G L  A   I S+P   N  IW +LL+G R H   DI +
Sbjct: 830  EFGVEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALLNGCRIHKRIDIIK 889

Query: 506  YAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVL 565
                NL+ V     G Y +LSNIYA  G WDK  +VR MMK +G RK PG S+IE    +
Sbjct: 890  SIEKNLLDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGLRKVPGYSTIEIDKKI 949

Query: 566  HEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGH--VPDTTQVLLCIEDQKEKEAELENHSE 623
            + F  GD SH QT +I+  L   R+ + A  +   PD + V      +  KE  + +HSE
Sbjct: 950  YRFGPGDTSHSQTKDIYRFLENFRSLVHAQVYDSEPDNSIVGT---SKFNKENNVVSHSE 1006

Query: 624  RLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSC 683
            +LAIAFG+IN +  + +RI KNLRVC DCHS  K+ S I  REII+RD +RFH F+NGSC
Sbjct: 1007 KLAIAFGIINTRPGTTLRISKNLRVCRDCHSFAKIASKITGREIIMRDLNRFHCFRNGSC 1066

Query: 684  SCKDFW 689
            SC D+W
Sbjct: 1067 SCNDYW 1072


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 251/700 (35%), Positives = 381/700 (54%), Gaps = 66/700 (9%)

Query: 38   QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
            +Q+HA +++ N    +  ++ L+++Y    +  ++ A+++F  +     LV +N +I   
Sbjct: 454  KQVHAYTLR-NGDLRTYTNNALVTMYA--RLGRVNDAKALFG-VFDGKDLVSWNTVISSL 509

Query: 98   VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLG-FGFD 156
              N R  EAL     ++   + PD  TL  V+   ++L  ++ G++IH    + G    +
Sbjct: 510  SQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREIHCYALRNGDLIEN 569

Query: 157  KFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM-- 214
             FV ++LV MY    +   GR VFD +  + +  WN L+ GY +    + A++LF EM  
Sbjct: 570  SFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAGYARNEFDDQALRLFVEMIS 629

Query: 215  -----PD---------------------------------RDLFSWTCLVDGFSKCGKVE 236
                 P+                                 +D +    L+D +S+ G+VE
Sbjct: 630  ESEFCPNATTFASVLPACVRCKVFSDKEGIHGYIVKRGFGKDKYVQNALMDMYSRMGRVE 689

Query: 237  IAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGR 296
            I++ IF RM  R++VSWN MI G +  G  D A  L  +M+ R     +     YE +G 
Sbjct: 690  ISKTIFGRMNKRDIVSWNTMITGCIVCGRYDDALNLLHEMQRRQGEDGSDTFVDYEDDGG 749

Query: 297  FMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTL 356
                             PN  TL++ L   A LA L KG+ +H+Y VK    +D  +G+ 
Sbjct: 750  V-------------PFKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQKLAMDVAVGSA 796

Query: 357  LIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG---- 412
            L+ MY+KCG +  A  VF  +  + V  W  +I+  GMHG   +AL+LF  M   G    
Sbjct: 797  LVDMYAKCGCLNLASRVFDQMPIRNVITWNVLIMAYGMHGKGEEALELFRIMTAGGGSNR 856

Query: 413  --MKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLE 470
              ++P  +T+I +  ACSH+G+V++G   F+ M   +G+EP  +HY CLVD+L R+G ++
Sbjct: 857  EVIRPNEVTYIAIFAACSHSGMVDEGLHLFHTMKASHGVEPRGDHYACLVDLLGRSGRVK 916

Query: 471  EAKSTIESMPMRPNFV-IWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIY 529
            EA   I +MP   N V  W SLL   R H + + GE AA +L  + P+    YV++SNIY
Sbjct: 917  EAYELINTMPSNLNKVDAWSSLLGACRIHQSVEFGEIAAKHLFVLEPNVASHYVLMSNIY 976

Query: 530  AAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMR 589
            ++AG WD+   VR+ MK+ G RK+PG S IEH   +H+F+ GD SHPQ+ E+H  L  + 
Sbjct: 977  SSAGLWDQALGVRKKMKEMGVRKEPGCSWIEHGDEVHKFLSGDASHPQSKELHEYLETLS 1036

Query: 590  NKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVC 649
             +++  G+VPD + VL  ++D+ EKE  L  HSERLAIAFGL+N    + IR+ KNLRVC
Sbjct: 1037 QRMRKEGYVPDISCVLHNVDDE-EKETMLCGHSERLAIAFGLLNTPPGTTIRVAKNLRVC 1095

Query: 650  NDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            NDCH  TK++S I +REII+RD  RFHHF NG+CSC D+W
Sbjct: 1096 NDCHVATKIISKIVDREIILRDVRRFHHFANGTCSCGDYW 1135



 Score =  181 bits (460), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 126/388 (32%), Positives = 201/388 (51%), Gaps = 18/388 (4%)

Query: 121 DNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK--FVLSSLVSMYAKFGEIDLGRR 178
           DNF  P V+K AA +  +  GKQIH  VFK G        V +SLV+MY K G++   R+
Sbjct: 329 DNFAFPAVLKAAAAVHDLCLGKQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQ 388

Query: 179 VFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM--PDRDLFSWTCLVDGFSKC---- 232
           VFD + D+D VSWN +I    +  E E+++ LF  M   + D  S+T LV     C    
Sbjct: 389 VFDDIPDRDHVSWNSMIATLCRFEEWELSLHLFRLMLSENVDPTSFT-LVSVAHACSHVR 447

Query: 233 GKVEIAREIF-YRMPNRNLVSW--NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIA 289
           G V + +++  Y + N +L ++  NA++  Y + G V+ A  LF   + +DL++WN++I+
Sbjct: 448 GGVRLGKQVHAYTLRNGDLRTYTNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVIS 507

Query: 290 GYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNG-FV 348
               N RF EAL  +  M++  V P+  TL S L A + L  L  GR +H Y ++NG  +
Sbjct: 508 SLSQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREIHCYALRNGDLI 567

Query: 349 VDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKM 408
            +  +GT L+ MY  C   +    VF  + ++ V  W A++ G   +    QAL LF +M
Sbjct: 568 ENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAGYARNEFDDQALRLFVEM 627

Query: 409 CRMG-MKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN-DYGIEPTIEHYGCLVDILCRT 466
                  P A TF  VL AC    + +D       ++   +G +  +++   L+D+  R 
Sbjct: 628 ISESEFCPNATTFASVLPACVRCKVFSDKEGIHGYIVKRGFGKDKYVQN--ALMDMYSRM 685

Query: 467 GYLEEAKSTIESMPMRPNFVIWMSLLSG 494
           G +E +K+    M  R + V W ++++G
Sbjct: 686 GRVEISKTIFGRMNKR-DIVSWNTMITG 712



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 119/274 (43%), Gaps = 12/274 (4%)

Query: 276 MEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKG 335
           +E R    W  ++     +  F +A+     ML     P++    + L A A +  L  G
Sbjct: 290 VERRSPSQWIDLLRSQTHSSSFRDAISTYAAMLAAPAPPDNFAFPAVLKAAAAVHDLCLG 349

Query: 336 RWMHSYIVKNGFVVDG--VLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLG 393
           + +H+++ K G        +   L+ MY KCG + +A  VF  I  +    W +MI  L 
Sbjct: 350 KQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLC 409

Query: 394 MHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHA-GLVNDGRRYFNMMINDYGIEPT 452
                  +L LF  M    + PT+ T + V +ACSH  G V  G++     + +  +   
Sbjct: 410 RFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNGDLRTY 469

Query: 453 IEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG-ARNHGNKDIGEYAANNL 511
             +   LV +  R G + +AK+       + + V W +++S  ++N   ++   Y    +
Sbjct: 470 TNN--ALVTMYARLGRVNDAKALFGVFDGK-DLVSWNTVISSLSQNDRFEEALMYVYLMI 526

Query: 512 IK-VAPDTIGCYVVLSNIYAAAGQWDKVSEVREM 544
           +  V PD     V L+++  A  Q +++   RE+
Sbjct: 527 VDGVRPDG----VTLASVLPACSQLERLRIGREI 556


>gi|297833028|ref|XP_002884396.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330236|gb|EFH60655.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 882

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 239/663 (36%), Positives = 387/663 (58%), Gaps = 12/663 (1%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           K+ Q LH  ++K+ +   S +++ LL++Y+    +    AR +FD ++   S V YN +I
Sbjct: 224 KQGQGLHGFTLKSGVNSVSVVNNGLLAMYL--KFSRPTDARRVFDEMVVRDS-VTYNTMI 280

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
             Y+  +   E++ +F + LD+F  PD  T+  V+     L  +   K I+  + + GF 
Sbjct: 281 CGYLKLEMVEESVKMFLENLDQFK-PDILTVTSVLCACGHLRDLSLAKYIYNYMLRAGFV 339

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
            +  V + L+ +YAK G++   R VF++M+ KD VSWN +I GY++ G++  AMKLF  M
Sbjct: 340 LESTVKNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMM 399

Query: 215 ----PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR----NLVSWNAMINGYMKAGDV 266
                  D  ++  L+   ++   ++  + +           +L   NA+I+ Y K G+V
Sbjct: 400 MIMEEQADHITYLMLISLSTRLADLKFGKGLHSNGIKSGIYIDLSVSNALIDMYAKCGEV 459

Query: 267 DSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326
             + ++F+ M   D +TWN++I+     G F   L++   M    V+P+ AT +  L   
Sbjct: 460 GDSLKIFNSMGTLDTVTWNTVISACVRFGDFATGLQVTTQMRKNKVVPDMATFLVTLPMC 519

Query: 327 AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWT 386
           A LA    G+ +H  +++ G+  +  +G  LI+MYSKCG +ES+  VF  +S++ V  WT
Sbjct: 520 ASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLESSFRVFERMSRRDVVTWT 579

Query: 387 AMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIND 446
            MI   GM+G   +AL+ F  M + G+ P ++ FI ++ ACSH+GLV  G   F  M   
Sbjct: 580 GMIYAYGMYGEGEKALESFVDMEKSGIVPDSVVFIALIYACSHSGLVEKGLACFEKMKTH 639

Query: 447 YGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEY 506
           Y I+P IEHY C+VD+L R+  + +A+  I++MP+ P+  IW S+L   R  G+ +  E 
Sbjct: 640 YKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIEPDASIWASVLRACRTSGDMETAER 699

Query: 507 AANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLH 566
            +  +I++ PD  G  ++ SN YAA  +WDKVS +R+ ++ +  +K+PG S IE    +H
Sbjct: 700 VSRRIIELNPDDPGYSILASNAYAALRKWDKVSLIRKSVRDKHIKKNPGYSWIEIGKKVH 759

Query: 567 EFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLA 626
            F  GD S PQ++ IH  L  + + +   G++PD+ +V   +E+++EK   +  HSERLA
Sbjct: 760 VFCSGDDSAPQSEAIHKSLEILYSLMAKEGYIPDSREVSQNLEEEEEKRRLICGHSERLA 819

Query: 627 IAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCK 686
           IAFGL+N +  +P++++KNLRVC+DCH VTKL+S I  REI+VRD +RFH FK+G CSCK
Sbjct: 820 IAFGLLNTEPGTPLQVMKNLRVCSDCHEVTKLISKIVGREILVRDANRFHLFKDGICSCK 879

Query: 687 DFW 689
           D W
Sbjct: 880 DRW 882



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 140/528 (26%), Positives = 251/528 (47%), Gaps = 29/528 (5%)

Query: 15  LQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYA 74
           +Q  + S      L  SS   E +++HAL +   L      S +L+  Y   H      +
Sbjct: 1   MQTRVSSAFISRALSSSSNLNELRRIHALVISLGLDGSDFFSGKLIDKY--SHFRAPASS 58

Query: 75  RSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAAR 134
            S+F R+    ++ ++N +I+ +  N    +AL  +  L +  + PD +T P VIK  A 
Sbjct: 59  LSVFRRVSPAKNVYIWNSIIRAFSKNGWFPKALEFYGKLRESKVSPDKYTFPSVIKACAG 118

Query: 135 LGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCL 194
           L   + G  ++  + ++GF  D +V ++LV MY++ G +   R+VFD M  +DLVSWN L
Sbjct: 119 LFDAEMGDLVYKQILEMGFESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSL 178

Query: 195 IDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREI--FYRMPNR 248
           I GY   G  E A++++ E+ +     D F+ + ++  F+    V+  + +  F      
Sbjct: 179 ISGYSSHGYYEEALEIYHELRNSWIVPDSFTVSSVLPAFANLLVVKQGQGLHGFTLKSGV 238

Query: 249 NLVSW--NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGY-------ELNGRFME 299
           N VS   N ++  Y+K      A  +FD+M +RD +T+N+MI GY       E    F+E
Sbjct: 239 NSVSVVNNGLLAMYLKFSRPTDARRVFDEMVVRDSVTYNTMICGYLKLEMVEESVKMFLE 298

Query: 300 ALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQ 359
            L+  +        P+  T+ S L A   L  L+  +++++Y+++ GFV++  +  +LI 
Sbjct: 299 NLDQFK--------PDILTVTSVLCACGHLRDLSLAKYIYNYMLRAGFVLESTVKNILID 350

Query: 360 MYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAIT 419
           +Y+KCG + +A  VF ++  K    W ++I G    G   +A+ LF  M  M  +   IT
Sbjct: 351 VYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHIT 410

Query: 420 FIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM 479
           ++ +++  +    +  G+   +  I   GI   +     L+D+  + G + ++     SM
Sbjct: 411 YLMLISLSTRLADLKFGKGLHSNGIKS-GIYIDLSVSNALIDMYAKCGEVGDSLKIFNSM 469

Query: 480 PMRPNFVIWMSLLSGARNHGNKDIGEYAANNLI--KVAPDTIGCYVVL 525
               + V W +++S     G+   G      +   KV PD     V L
Sbjct: 470 GTL-DTVTWNTVISACVRFGDFATGLQVTTQMRKNKVVPDMATFLVTL 516


>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 255/782 (32%), Positives = 392/782 (50%), Gaps = 127/782 (16%)

Query: 31  SSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVL- 89
           S+T    + +HA  + +    ++ I +RL+++Y     +N+ YAR +FD+I + P +V  
Sbjct: 18  STTQIIARAVHAHILTSGFKPNTFILNRLINIYCKS--SNITYARKLFDKIPK-PDIVAR 74

Query: 90  --------------------------------YNLLIKCYVFNQRSHEALTLFCDLLDRF 117
                                           YN +I  Y      H AL LF  +    
Sbjct: 75  TTLLSAYSSSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYG 134

Query: 118 LLPDNFTLPCVIKGAARLG-AIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDL- 175
            LPD FT   V+   + +    +  + +H  V KLG      V ++L+S Y       L 
Sbjct: 135 FLPDPFTFSSVLSALSLIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVCCASSPLV 194

Query: 176 --------GRRVFDAMDDKDL---------------------------------VSWNCL 194
                    R+VFD      +                                 V+WN +
Sbjct: 195 KSSQLMASARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAM 254

Query: 195 IDGYVKKGEVEVAMKLFDEMP----DRDLFSWTCLVD---------GFSKCGK------- 234
           I GYV++G  E A   F  M       D +++T L+          G   CG+       
Sbjct: 255 ISGYVRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYIL 314

Query: 235 ---VEI------------------------AREIFYRMPNRNLVSWNAMINGYMKAGDVD 267
              VE                         AR +F +MP R+++SWNA+++GY+ A  ++
Sbjct: 315 RTVVEPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYVNAQRIE 374

Query: 268 SACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVA 327
            A  +F +M  R+++TW  MI+G   NG   E L+L   M    + P D     A++A +
Sbjct: 375 EANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACS 434

Query: 328 GLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTA 387
            L  L+ G+ +HS +++ G       G  LI MYS+CG +ESA +VF  +       W A
Sbjct: 435 VLGSLDNGQQIHSQVIRLGHDSGLSAGNALITMYSRCGVVESAESVFLTMPYVDSVSWNA 494

Query: 388 MIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDY 447
           MI  L  HG   +A++LF +M +  + P  ITF+ +L AC+HAGL+ +GR YF+ M   Y
Sbjct: 495 MIAALAQHGHGVKAIELFEQMMKEDILPDRITFLTILTACNHAGLIKEGRHYFDTMCTRY 554

Query: 448 GIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYA 507
           GI P  +HY  L+D+LCR G   +A+S I+SMP      IW +LL+G R HGN ++G  A
Sbjct: 555 GITPGEDHYARLIDLLCRAGMFLKAQSVIKSMPFEAGAPIWEALLAGCRIHGNMELGIQA 614

Query: 508 ANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHE 567
           A+ L+++ P   G Y++LSN+YAA GQWD+V+ VR +M++RG +K+PG S +E   ++H 
Sbjct: 615 ADRLLELIPGQDGTYIILSNMYAALGQWDEVARVRLLMRERGVKKEPGCSWVEVENMVHV 674

Query: 568 FVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAI 627
           F+V D  HP+   +++ L ++ N++K  G+VPDT  VL  +E +  KE  L  HSE+LA+
Sbjct: 675 FLVDDARHPEVQAVYTYLQQLVNEMKKLGYVPDTKFVLHDMESE-HKEHSLSTHSEKLAV 733

Query: 628 AFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKD 687
            +G++ +   + IR+ KNLR+C DCH+  K +S +  REI+VRD  RFHHFKNG CSC +
Sbjct: 734 VYGIMKLPLGATIRVFKNLRICGDCHNAFKYISKVVEREIVVRDRKRFHHFKNGECSCGN 793

Query: 688 FW 689
           +W
Sbjct: 794 YW 795


>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 595

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 227/564 (40%), Positives = 339/564 (60%), Gaps = 18/564 (3%)

Query: 142 KQIHGLVFKLGFGFD-----KFVLSSLVSMYAKFGEIDLGRRVFDAMDDK-DLVSWNCLI 195
           +QIH    + G         K ++  LVS+ +    +    +VF  ++   ++  WN LI
Sbjct: 34  RQIHAFSIRNGVSISDAELGKHLIFYLVSLPSP-PPMSYAHKVFSKIEKPINVFIWNTLI 92

Query: 196 DGYVKKGEVEVAMKLFDEMP-----DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNL 250
            GY + G    A+ L+ EM      + D  ++  L+    K   V +   I   +     
Sbjct: 93  RGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAVGKMADVRLGETIHSVVIRSGF 152

Query: 251 VSW----NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLET 306
            S     N++++ Y   GDV SA ++FD M  +DL+ WNS+I G+  NG+  EAL L   
Sbjct: 153 GSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTE 212

Query: 307 MLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGS 366
           M +  + P+  T+VS LSA A +  L  G+  H Y++K G   +     +L+ +Y++CG 
Sbjct: 213 MDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYMIKVGLTRNLHSSNVLLDLYARCGR 272

Query: 367 IESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKM-CRMGMKPTAITFIGVLN 425
           +E A T+F  +  K    WT++IVGL ++G+  +A++LF  M  + G+ P  ITF+G+L 
Sbjct: 273 VEEAKTLFDEMVDKNSVSWTSLIVGLAVNGLGKEAIELFKNMESKEGLLPCEITFVGILY 332

Query: 426 ACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNF 485
           ACSH G+V +G  YF  M  +Y IEP IEH+GC+VD+L R G +++A   I  MPM+PN 
Sbjct: 333 ACSHCGMVKEGFEYFRRMSEEYKIEPRIEHFGCMVDLLARAGQVKKAYEYILKMPMQPNV 392

Query: 486 VIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMM 545
           VIW +LL     HG+ D+ E A   ++++ P+  G YV+LSN+YA+  +W  V ++R+ M
Sbjct: 393 VIWRTLLGACTVHGDSDLAELARMKILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQM 452

Query: 546 KKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVL 605
            + G RK PG S +E    +HEF++GDKSHPQ D I++KL EM ++L+  G+VP  + V 
Sbjct: 453 LRDGVRKVPGHSLVEVGNRVHEFLMGDKSHPQNDMIYAKLKEMTDRLRLEGYVPQISNVY 512

Query: 606 LCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNR 665
           + +E++ EKE  L  HSE++AIAF LI+   R PIR+VKNL+VC DCH   KL+S +YNR
Sbjct: 513 VDVEEE-EKENALVYHSEKIAIAFMLISTPERWPIRVVKNLKVCADCHLAIKLVSKVYNR 571

Query: 666 EIIVRDNSRFHHFKNGSCSCKDFW 689
           EI+VRD SRFHHFKNGSCSC+D+W
Sbjct: 572 EIVVRDRSRFHHFKNGSCSCQDYW 595



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 111/417 (26%), Positives = 203/417 (48%), Gaps = 55/417 (13%)

Query: 32  STHKETQQLHALSVKTNL-IYHSGISSRLLSLYVD-PHINNLHYARSIFDRILQHPSLVL 89
           S+  + +Q+HA S++  + I  + +   L+   V  P    + YA  +F +I +  ++ +
Sbjct: 28  SSLTKLRQIHAFSIRNGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVFI 87

Query: 90  YNLLIKCYVFNQRSHEALTLFCDL-LDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLV 148
           +N LI+ Y     S  A++L+ ++    F+ PD  T P ++K   ++  ++ G+ IH +V
Sbjct: 88  WNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAVGKMADVRLGETIHSVV 147

Query: 149 FKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAM 208
            + GFG   +V +SL+ +YA  G++    +VFD M +KDLV+WN +I+G+ + G+ E A+
Sbjct: 148 IRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEAL 207

Query: 209 KLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREIFYRMP----NRNLVSWNAMINGY 260
            L+ EM  +    D F+   L+   +K G + + +     M      RNL S N +++ Y
Sbjct: 208 ALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYMIKVGLTRNLHSSNVLLDLY 267

Query: 261 MKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGD-VLPNDATL 319
            + G V+ A  LFD+M  ++ ++W S+I G  +NG   EA+EL + M   + +LP + T 
Sbjct: 268 ARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGLGKEAIELFKNMESKEGLLPCEITF 327

Query: 320 VSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK 379
           V  L A                                    S CG ++     FR +S+
Sbjct: 328 VGILYAC-----------------------------------SHCGMVKEGFEYFRRMSE 352

Query: 380 K-----KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAG 431
           +     ++ H+  M+  L   G   +A   +  + +M M+P  + +  +L AC+  G
Sbjct: 353 EYKIEPRIEHFGCMVDLLARAGQVKKA---YEYILKMPMQPNVVIWRTLLGACTVHG 406



 Score = 47.0 bits (110), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 88/207 (42%), Gaps = 10/207 (4%)

Query: 328 GLAVLNKGRWMHSYIVKNGF-VVDGVLGTLLIQMYSKCGS---IESALTVFRAISKK-KV 382
           G++ L K R +H++ ++NG  + D  LG  LI       S   +  A  VF  I K   V
Sbjct: 26  GVSSLTKLRQIHAFSIRNGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINV 85

Query: 383 GHWTAMIVGLGMHGMATQALDLFNKMCRMG-MKPTAITFIGVLNACSHAGLVNDGRRYFN 441
             W  +I G    G +  A+ L+ +M   G ++P   T+  +L A      V  G    +
Sbjct: 86  FIWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAVGKMADVRLGETIHS 145

Query: 442 MMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNK 501
           ++I   G    I     L+ +    G +  A    + MP + + V W S+++G   +G  
Sbjct: 146 VVIRS-GFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEK-DLVAWNSVINGFAENGKP 203

Query: 502 D--IGEYAANNLIKVAPDTIGCYVVLS 526
           +  +  Y   +L  + PD      +LS
Sbjct: 204 EEALALYTEMDLKGIKPDGFTIVSLLS 230


>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 591

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 227/561 (40%), Positives = 341/561 (60%), Gaps = 17/561 (3%)

Query: 142 KQIHGLVFKLGFGFD-----KFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLID 196
           KQIH    + G   +     K ++ ++VS+ A    +     VF  + + ++ +WN +I 
Sbjct: 35  KQIHAFSIRHGVSLNNPDMGKHLIFTIVSLSAP---MSYAYNVFTVIHNPNVFTWNTIIR 91

Query: 197 GYVKKGEVEVAMKLFDEMP----DRDLFSWTCLVDGFSKCGKV---EIAREIFYRMPNRN 249
           GY +      A   + +M     + D  ++  L+   SK   V   E    +  R    +
Sbjct: 92  GYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAISKSLNVREGEAIHSVTIRNGFES 151

Query: 250 LV-SWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETML 308
           LV   N++++ Y   GD +SA ++F+ M+ RDL+ WNSMI G+ LNGR  EAL L   M 
Sbjct: 152 LVFVQNSLLHIYAACGDTESAYKVFELMKERDLVAWNSMINGFALNGRPNEALTLFREMS 211

Query: 309 IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIE 368
           +  V P+  T+VS LSA A L  L  GR +H Y++K G   +  +   L+ +Y+KCG+I 
Sbjct: 212 VEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGLSKNSHVTNSLLDLYAKCGAIR 271

Query: 369 SALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACS 428
            A  VF  +S++    WT++IVGL ++G   +AL+LF +M   G+ P+ ITF+GVL ACS
Sbjct: 272 EAQRVFSEMSERNAVSWTSLIVGLAVNGFGEEALELFKEMEGQGLVPSEITFVGVLYACS 331

Query: 429 HAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIW 488
           H G++++G  YF  M  + GI P IEHYGC+VD+L R G +++A   I++MP++PN VIW
Sbjct: 332 HCGMLDEGFEYFRRMKEECGIIPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVIW 391

Query: 489 MSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548
            +LL     HG+  +GE A ++L+ + P   G YV+LSN+YA+  +W  V  +R  M K 
Sbjct: 392 RTLLGACTIHGHLGLGEIARSHLLNLEPKHSGDYVLLSNLYASERRWSDVQVIRRSMLKD 451

Query: 549 GFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCI 608
           G +K PG S +E    ++EF +GD+SHPQ+ ++++ L ++   LK  G+VP T  VL  I
Sbjct: 452 GVKKTPGYSLVELGNRVYEFTMGDRSHPQSQDVYALLEKITELLKLEGYVPHTANVLADI 511

Query: 609 EDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREII 668
           E++ EKE  L  HSE++AIAF L+N    +PIR++KNLRVC DCH   KL++ IY+REI+
Sbjct: 512 EEE-EKEQALSYHSEKVAIAFMLLNTPPGTPIRVMKNLRVCADCHMAIKLIAKIYDREIV 570

Query: 669 VRDNSRFHHFKNGSCSCKDFW 689
           +RD SRFHHF+ GSCSCKD+W
Sbjct: 571 IRDRSRFHHFRGGSCSCKDYW 591



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 107/428 (25%), Positives = 205/428 (47%), Gaps = 48/428 (11%)

Query: 26  NILKF--SSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQ 83
           ++L+F  SS HK  +Q+HA S++  +  ++    + L   +      + YA ++F  ++ 
Sbjct: 22  SLLQFCASSKHK-LKQIHAFSIRHGVSLNNPDMGKHLIFTIVSLSAPMSYAYNVFT-VIH 79

Query: 84  HPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQ 143
           +P++  +N +I+ Y  +     A   +  ++   + PD  T P ++K  ++   ++EG+ 
Sbjct: 80  NPNVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAISKSLNVREGEA 139

Query: 144 IHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGE 203
           IH +  + GF    FV +SL+ +YA  G+ +   +VF+ M ++DLV+WN +I+G+   G 
Sbjct: 140 IHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFELMKERDLVAWNSMINGFALNGR 199

Query: 204 VEVAMKLFDEMP----DRDLFSWTCLVDGFSKCGKVEIAREIFYRM----PNRNLVSWNA 255
              A+ LF EM     + D F+   L+   ++ G +E+ R +   +     ++N    N+
Sbjct: 200 PNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGLSKNSHVTNS 259

Query: 256 MINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPN 315
           +++ Y K G +  A  +F +M  R+ ++W S+I G  +NG   EALEL + M    ++P+
Sbjct: 260 LLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNGFGEEALELFKEMEGQGLVPS 319

Query: 316 DATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFR 375
           + T V  L A +   +L++G                       +M  +CG I        
Sbjct: 320 EITFVGVLYACSHCGMLDEGF------------------EYFRRMKEECGII-------- 353

Query: 376 AISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACS---HAGL 432
                ++ H+  M+  L   G+  QA +       M ++P A+ +  +L AC+   H GL
Sbjct: 354 ----PRIEHYGCMVDLLSRAGLVKQAYEYIQN---MPVQPNAVIWRTLLGACTIHGHLGL 406

Query: 433 VNDGRRYF 440
               R + 
Sbjct: 407 GEIARSHL 414



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 166/334 (49%), Gaps = 25/334 (7%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           +E + +H+++++        + + LL +Y      +   A  +F+ +++   LV +N +I
Sbjct: 135 REGEAIHSVTIRNGFESLVFVQNSLLHIYAA--CGDTESAYKVFE-LMKERDLVAWNSMI 191

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
             +  N R +EALTLF ++    + PD FT+  ++  +A LGA++ G+++H  + K+G  
Sbjct: 192 NGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGLS 251

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
            +  V +SL+ +YAK G I   +RVF  M +++ VSW  LI G    G  E A++LF EM
Sbjct: 252 KNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNGFGEEALELFKEM 311

Query: 215 PDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNR-----NLVSWNAMINGYMKAGD 265
             + L     ++  ++   S CG ++   E F RM         +  +  M++   +AG 
Sbjct: 312 EGQGLVPSEITFVGVLYACSHCGMLDEGFEYFRRMKEECGIIPRIEHYGCMVDLLSRAGL 371

Query: 266 VDSACELFDDMEIR-DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPN---DATLVS 321
           V  A E   +M ++ + + W +++    ++G      E+  + L+ ++ P    D  L+S
Sbjct: 372 VKQAYEYIQNMPVQPNAVIWRTLLGACTIHGHLGLG-EIARSHLL-NLEPKHSGDYVLLS 429

Query: 322 ALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGT 355
            L A       ++ RW    +++   + DGV  T
Sbjct: 430 NLYA-------SERRWSDVQVIRRSMLKDGVKKT 456


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 244/679 (35%), Positives = 394/679 (58%), Gaps = 25/679 (3%)

Query: 32  STHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYN 91
           + H   + +H  ++   L     +S+ LL +YV      L  A  IF  +     LV +N
Sbjct: 139 ADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVK--CACLPDAAHIFATMPAR-DLVAWN 195

Query: 92  LLIKCYVFNQRSHEALTLFCDLLDRF--LLPDNFTLPCVIKGAARLGAIKEGKQIHGLVF 149
            ++  Y  +   H A+     +  +   L P+  TL  ++   A+ GA+ +G  +H    
Sbjct: 196 AMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCI 255

Query: 150 KLGFGFDK----------FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYV 199
           +     ++           + ++L+ MYAK G +   RRVFDAM  ++ V+W+ LI G+V
Sbjct: 256 RACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFV 315

Query: 200 KKGEVEVAMKLFDEMPDRDL--FSWTCLVDGFSKCGKVEIAR--EIFYRMPNR-----NL 250
               +  A  LF  M  + L   S T +      C  ++  R  E  + +  +     +L
Sbjct: 316 LCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADL 375

Query: 251 VSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIG 310
            + N++++ Y KAG +D A  LFD+M ++D ++++++++GY  NGR  EA  + + M   
Sbjct: 376 TAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQAC 435

Query: 311 DVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESA 370
           +V P+ AT+VS + A + LA L  GR  H  ++  G   +  +   LI MY+KCG I+ +
Sbjct: 436 NVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLS 495

Query: 371 LTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHA 430
             VF  +  + +  W  MI G G+HG+  +A  LF +M  +G  P  +TFI +L+ACSH+
Sbjct: 496 RQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHS 555

Query: 431 GLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMS 490
           GLV +G+ +F++M + YG+ P +EHY C+VD+L R G+L+EA   I+SMP+R +  +W++
Sbjct: 556 GLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVA 615

Query: 491 LLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGF 550
           LL   R + N D+G+  +  + ++ P+  G +V+LSNIY+AAG++D+ +EVR + K +GF
Sbjct: 616 LLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGF 675

Query: 551 RKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIED 610
           +K PG S IE  G LH FV GD+SHPQ+ EI+ +L  +   +K  G+ PDT+ VL  +E+
Sbjct: 676 KKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEE 735

Query: 611 QKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVR 670
           +++++A L  HSE+LAIA+G++++     I + KNLRVC DCH+V K +S +  R IIVR
Sbjct: 736 EEKEKA-LICHSEKLAIAYGILSLSEDKTIFVTKNLRVCGDCHTVIKHISLVKRRAIIVR 794

Query: 671 DNSRFHHFKNGSCSCKDFW 689
           D +RFHHFKNG CSC DFW
Sbjct: 795 DANRFHHFKNGQCSCGDFW 813



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 109/248 (43%), Gaps = 14/248 (5%)

Query: 260 YMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEA--LELLETMLIGDVLPNDA 317
           ++ +G +  A  LFD +   D+ T+N +I  Y  +     A  L L   ML   V PN+ 
Sbjct: 67  HIASGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNY 126

Query: 318 TLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAI 377
           T   AL A + LA  + GR +H + +  G   D  + T L+ MY KC  +  A  +F  +
Sbjct: 127 TFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATM 186

Query: 378 SKKKVGHWTAMIVGLGMHGMATQALD--LFNKMCRMGMKPTAITFIGVLNACSHAGLVND 435
             + +  W AM+ G   HGM   A+   L  +M    ++P A T + +L   +  G +  
Sbjct: 187 PARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQ 246

Query: 436 GRRYFNMMI---------NDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFV 486
           G       I         +   +   +     L+D+  + G L  A+   ++MP R N V
Sbjct: 247 GTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPAR-NEV 305

Query: 487 IWMSLLSG 494
            W +L+ G
Sbjct: 306 TWSALIGG 313


>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 705

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 231/570 (40%), Positives = 334/570 (58%), Gaps = 27/570 (4%)

Query: 143 QIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK------DLVSWNCLID 196
           QIH L+ KLG   +  VL+   +  + F  +     V    D        D   +N LI 
Sbjct: 140 QIHSLILKLGLHHNPLVLTKFAATSSHFNAVHYASSVLFPNDQTTPPPSHDAFLFNTLIR 199

Query: 197 GYVKKGEVEV-AMKLFDEM------PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRN 249
            + +    +  A++ ++ M      P++  F++  ++   +   ++E+   +   M    
Sbjct: 200 AFAQTTHSKPHALRFYNTMRRHAVSPNK--FTFPFVLKACAGMMRLELGGAVHASMVKFG 257

Query: 250 LVS----WNAMINGYM------KAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFME 299
                   N +++ Y        +G V SA ++FD+  ++D +TW++MI GY   G    
Sbjct: 258 FEEDPHVRNTLVHMYCCCCQDGSSGPV-SAKKVFDESPVKDSVTWSAMIGGYARAGNSAR 316

Query: 300 ALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQ 359
           A+ L   M +  V P++ T+VS LSA A L  L  G+W+ SYI +   +    L   LI 
Sbjct: 317 AVTLFREMQVTGVCPDEITMVSVLSACADLGALELGKWLESYIERKNIMRSVELCNALID 376

Query: 360 MYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAIT 419
           M++KCG ++ A+ VFR +  + +  WT+MIVGL MHG   +A+ +F++M   G+ P  + 
Sbjct: 377 MFAKCGDVDRAVKVFREMKVRTIVSWTSMIVGLAMHGRGLEAVLVFDEMMEQGVDPDDVA 436

Query: 420 FIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM 479
           FIGVL+ACSH+GLV+ G  YFN M N + I P IEHYGC+VD+L R G + EA   + +M
Sbjct: 437 FIGVLSACSHSGLVDKGHYYFNTMENMFSIVPKIEHYGCMVDMLSRAGRVNEALEFVRAM 496

Query: 480 PMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVS 539
           P+ PN VIW S+++     G   +GE  A  LI+  P     YV+LSNIYA   +W+K +
Sbjct: 497 PVEPNQVIWRSIVTACHARGELKLGESVAKELIRREPSHESNYVLLSNIYAKLLRWEKKT 556

Query: 540 EVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVP 599
           +VREMM  +G RK PGS+ IE    ++EFV GDKSH Q  EI+  + EM  ++K AG+VP
Sbjct: 557 KVREMMDVKGMRKIPGSTMIEMNNEIYEFVAGDKSHDQYKEIYEMVEEMGREIKRAGYVP 616

Query: 600 DTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLL 659
            T+QVLL I D+++KE  L  HSE+LAIAF L++    +PIRIVKNLRVC DCHS TK +
Sbjct: 617 TTSQVLLDI-DEEDKEDALYRHSEKLAIAFALLSTPPGTPIRIVKNLRVCEDCHSATKFI 675

Query: 660 SGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           S +YNREI+VRD +RFHHFKNG CSC DFW
Sbjct: 676 SKVYNREIVVRDRNRFHHFKNGLCSCGDFW 705


>gi|5080805|gb|AAD39314.1|AC007258_3 Hypothetical protein [Arabidopsis thaliana]
          Length = 615

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 233/579 (40%), Positives = 345/579 (59%), Gaps = 36/579 (6%)

Query: 142 KQIHGLVFKLGFGFDK---FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGY 198
           KQ+H    +  +  +    F+   ++ + + F +++   RVFD++++     WN LI   
Sbjct: 42  KQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRAC 101

Query: 199 VKK-GEVEVAMKLFDEM-------PDRDLFSWT----CLVDGFSKCGKV--EIAREIFYR 244
                  E A  L+ +M       PD+  F +       + GFS+  +V  +I +  F  
Sbjct: 102 AHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGF-- 159

Query: 245 MPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELL 304
               ++   N +I+ Y   G +D A ++FD+M  R L++WNSMI      G +  AL+L 
Sbjct: 160 --GGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLF 217

Query: 305 ETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFV---VDGVLGTLLIQMY 361
             M      P+  T+ S LSA AGL  L+ G W H+++++   V   +D ++   LI+MY
Sbjct: 218 REMQ-RSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMY 276

Query: 362 SKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMC--RMGMKPTAIT 419
            KCGS+  A  VF+ + K+ +  W AMI+G   HG A +A++ F++M   R  ++P ++T
Sbjct: 277 CKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVT 336

Query: 420 FIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM 479
           F+G+L AC+H G VN GR+YF+MM+ DY IEP +EHYGC+VD++ R GY+ EA   + SM
Sbjct: 337 FVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSM 396

Query: 480 PMRPNFVIWMSLLSGARNHGNK-DIGEYAANNLIKVAPDT-------IGCYVVLSNIYAA 531
           PM+P+ VIW SLL      G   ++ E  A N+I    D         G YV+LS +YA+
Sbjct: 397 PMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYAS 456

Query: 532 AGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNK 591
           A +W+ V  VR++M + G RK+PG SSIE  G+ HEF  GD SHPQT +I+ +L  + ++
Sbjct: 457 ASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQQLKVIDDR 516

Query: 592 LKAAGHVPDTTQV-LLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCN 650
           L++ G++PD +Q  L+   +   KE  L  HSERLAIAFGLIN+  ++PIRI KNLRVCN
Sbjct: 517 LRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQTPIRIFKNLRVCN 576

Query: 651 DCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           DCH VTKL+S ++N EIIVRD  RFHHFK+GSCSC D+W
Sbjct: 577 DCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 615



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 125/455 (27%), Positives = 193/455 (42%), Gaps = 109/455 (23%)

Query: 22  RLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLS---LYVDPHINNLHYARSIF 78
           R+H  +L+  S   + +QLHA +++T   Y    ++  L    L +    ++++YA  +F
Sbjct: 26  RVHATVLQTCSDMSQLKQLHAFTLRTT--YPEEPATLFLYGKILQLSSSFSDVNYAFRVF 83

Query: 79  DRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRF-LLPDNFTLPCVIKGAARLGA 137
           D I  H S +   L+  C     R  EA  L+  +L+R    PD  T P V+K  A +  
Sbjct: 84  DSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFG 143

Query: 138 IKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDG 197
             EGKQ+H  + K GFG D +V + L+ +Y   G +DL R+VFD M ++ LVSWN +ID 
Sbjct: 144 FSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDA 203

Query: 198 YVKKGEVEVAMKLFDEM-----PD------------------------------------ 216
            V+ GE + A++LF EM     PD                                    
Sbjct: 204 LVRFGEYDSALQLFREMQRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVA 263

Query: 217 RDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDM 276
            D+     L++ + KCG + +A ++F  M  R+L SWNAMI G+   G  + A   FD  
Sbjct: 264 MDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFD-- 321

Query: 277 EIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGR 336
                              R ++  E        +V PN  T V  L A      +NKGR
Sbjct: 322 -------------------RMVDKRE--------NVRPNSVTFVGLLIACNHRGFVNKGR 354

Query: 337 WMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHG 396
                +V++                     IE AL            H+  ++  +   G
Sbjct: 355 QYFDMMVRD-------------------YCIEPALE-----------HYGCIVDLIARAG 384

Query: 397 MATQALDLFNKMCRMGMKPTAITFIGVLNACSHAG 431
             T+A+D+   +  M MKP A+ +  +L+AC   G
Sbjct: 385 YITEAIDM---VMSMPMKPDAVIWRSLLDACCKKG 416


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 240/661 (36%), Positives = 372/661 (56%), Gaps = 16/661 (2%)

Query: 40  LHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVF 99
           +H L+VK  L     +++ L+ +Y       L  A+ +FD+     ++V +N +I  Y  
Sbjct: 226 VHGLAVKLGLNEELMVNNSLIDMYSKCRF--LSEAQLLFDKN-DKKNIVSWNSMIGGYAR 282

Query: 100 NQRSHEALTLFCDLL--DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
            +       L   +   D  +  D FT+  V+        ++  K++HG  ++ G   ++
Sbjct: 283 EEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNE 342

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
            V ++ ++ Y + G +    RVFD MD K + SWN L+ GY +  +   A+ L+ +M D 
Sbjct: 343 LVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDS 402

Query: 218 ----DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWN-----AMINGYMKAGDVDS 268
               D F+   L+   S+   +    EI +    RN ++ +     ++++ Y+  G   +
Sbjct: 403 GLDPDWFTIGSLLLACSRMKSLHYGEEI-HGFALRNGLAVDPFIGISLLSLYICCGKPFA 461

Query: 269 ACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAG 328
           A  LFD ME R L++WN MIAGY  NG   EA+ L   ML   + P +  ++    A + 
Sbjct: 462 AQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQ 521

Query: 329 LAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAM 388
           L+ L  G+ +H + +K     D  + + +I MY+K G I  +  +F  + +K V  W  +
Sbjct: 522 LSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVI 581

Query: 389 IVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYG 448
           I G G+HG   +AL+LF KM R+G+KP   TF G+L ACSHAGLV DG  YFN M+N + 
Sbjct: 582 IAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHN 641

Query: 449 IEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAA 508
           IEP +EHY C+VD+L R G +++A   IE MP  P+  IW SLLS  R HGN  +GE  A
Sbjct: 642 IEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVA 701

Query: 509 NNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEF 568
           N L+++ P+    YV++SN++A +G+WD V  VR  MK  G +KD G S IE  G +H F
Sbjct: 702 NKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNF 761

Query: 569 VVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIA 628
           ++GD+  P+ +E+      +  K+ + G+ PDT  VL  +E++ +K   L  HSE+LAI+
Sbjct: 762 LIGDEMLPELEEVRETWRRLEVKISSIGYTPDTGSVLHDLEEE-DKIGILRGHSEKLAIS 820

Query: 629 FGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDF 688
           FGL+N     P+R+ KNLR+C DCH+  K +S + NR+I+VRDN RFHHF++G CSC D+
Sbjct: 821 FGLLNTAKGLPVRVYKNLRICGDCHNAAKFISKVVNRDIVVRDNKRFHHFRDGICSCGDY 880

Query: 689 W 689
           W
Sbjct: 881 W 881



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 134/549 (24%), Positives = 241/549 (43%), Gaps = 84/549 (15%)

Query: 38  QQLHAL-SVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKC 96
           ++LH + S  T       +++R++++Y      +   +R +FD+ L+  +L  +N ++  
Sbjct: 18  RRLHEMVSASTQFCNDFVLNTRIITMY--SMCGSPSDSRMVFDK-LRRKNLFQWNAIVSA 74

Query: 97  YVFNQRSHEALTLFCDLLDRFL-LPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF 155
           Y  N+   +A+++F +L+      PDNFTLPCVIK  A L  +  G+ IHG+  K+    
Sbjct: 75  YTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVS 134

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM- 214
           D FV ++L++MY K G ++   +VF+ M +++LVSWN +I G+ + G ++ +   F EM 
Sbjct: 135 DVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREML 194

Query: 215 -------PD---------------------------------RDLFSWTCLVDGFSKCGK 234
                  PD                                  +L     L+D +SKC  
Sbjct: 195 VGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRF 254

Query: 235 VEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELN 294
           +  A+ +F +   +N+VSWN+MI GY +  DV     L   M+  D              
Sbjct: 255 LSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTED-------------- 300

Query: 295 GRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLG 354
                            +  ++ T+++ L      + L   + +H Y  ++G   + ++ 
Sbjct: 301 ---------------AKMKADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVA 345

Query: 355 TLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMK 414
              I  Y++CG++ S+  VF  +  K V  W A++ G   +    +ALDL+ +M   G+ 
Sbjct: 346 NAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLD 405

Query: 415 PTAITFIGVLNACSHAGLVNDGRRYFNMMI-NDYGIEPTIEHYGCLVDILCRTGYLEEAK 473
           P   T   +L ACS    ++ G       + N   ++P I      + I C   +   A+
Sbjct: 406 PDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPF--AAQ 463

Query: 474 STIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAG 533
              + M  R + V W  +++G   +G  D    A N   ++  D I  Y +   I    G
Sbjct: 464 VLFDGMEHR-SLVSWNVMIAGYSQNGLPD---EAINLFRQMLSDGIQPYEI--AIMCVCG 517

Query: 534 QWDKVSEVR 542
              ++S +R
Sbjct: 518 ACSQLSALR 526



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 111/416 (26%), Positives = 200/416 (48%), Gaps = 21/416 (5%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           Q +H ++ K +L+    + + L+++Y    +  +  A  +F+ + +  +LV +N +I  +
Sbjct: 121 QIIHGMATKMDLVSDVFVGNALIAMYGKCGL--VEEAVKVFEHMPER-NLVSWNSIICGF 177

Query: 98  VFNQRSHEALTLFCDLL--DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF 155
             N    E+   F ++L  +   +PD  TL  V+   A    I++G  +HGL  KLG   
Sbjct: 178 SENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNE 237

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP 215
           +  V +SL+ MY+K   +   + +FD  D K++VSWN +I GY ++ +V     L  +M 
Sbjct: 238 ELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQ 297

Query: 216 DRDLFSWTCLVDGFSKCG--KVEIAREIFYRMPNRNLVSW-----------NAMINGYMK 262
             D        D F+      V + R     +   +  SW           NA I  Y +
Sbjct: 298 TEDA---KMKADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTR 354

Query: 263 AGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSA 322
            G + S+  +FD M+ + + +WN+++ GY  N    +AL+L   M    + P+  T+ S 
Sbjct: 355 CGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSL 414

Query: 323 LSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKV 382
           L A + +  L+ G  +H + ++NG  VD  +G  L+ +Y  CG   +A  +F  +  + +
Sbjct: 415 LLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSL 474

Query: 383 GHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR 438
             W  MI G   +G+  +A++LF +M   G++P  I  + V  ACS    +  G+ 
Sbjct: 475 VSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKE 530



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 79/168 (47%), Gaps = 6/168 (3%)

Query: 335 GRWMHSYI-VKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLG 393
           GR +H  +     F  D VL T +I MYS CGS   +  VF  + +K +  W A++    
Sbjct: 17  GRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYT 76

Query: 394 MHGMATQALDLFNKMCRMGM-KPTAITFIGVLNACSHAGLVNDG-RRYFNMMINDYGIEP 451
            + +   A+ +F+++  +   KP   T   V+ AC  AGL++ G  +  + M     +  
Sbjct: 77  RNELFEDAMSIFSELISVTEHKPDNFTLPCVIKAC--AGLLDLGLGQIIHGMATKMDLVS 134

Query: 452 TIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
            +     L+ +  + G +EEA    E MP R N V W S++ G   +G
Sbjct: 135 DVFVGNALIAMYGKCGLVEEAVKVFEHMPER-NLVSWNSIICGFSENG 181


>gi|414867547|tpg|DAA46104.1| TPA: hypothetical protein ZEAMMB73_772392 [Zea mays]
          Length = 677

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 223/579 (38%), Positives = 346/579 (59%), Gaps = 15/579 (2%)

Query: 120 PDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRV 179
           P++ T    +   ARLG +   + +    F  G+G D FV S+L+ +Y++ G ++   RV
Sbjct: 105 PNSTTFTLTLTACARLGDLDAAESVRVRAFAAGYGHDVFVCSALLHLYSRCGAMEEAIRV 164

Query: 180 FDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFS---------WTCLVDGFS 230
           FD M  KD V+W+ ++ G+V  G    A+ ++  M +  +             C+  G +
Sbjct: 165 FDGMPRKDRVAWSTMVAGFVTAGRPVEALAMYSRMREHGVSDDEVVMVGVIQACMSTGNA 224

Query: 231 KCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAG 290
           + G     R + + M   ++V+  ++++ Y K G +D AC++F  M  R+ +TW+++I+G
Sbjct: 225 RIGASVHGRLLRHCM-RMDVVTTTSLVSMYAKNGHLDVACQVFRMMPYRNDVTWSALISG 283

Query: 291 YELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVD 350
           +  NGR +EAL+L   +    + P    LVSAL A A +  L  G+ +H +I++      
Sbjct: 284 FAQNGRAVEALDLFRELQADGLQPCSWALVSALLACASVGFLKLGKSIHGFILRR-LEWQ 342

Query: 351 GVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCR 410
            +LGT ++ MYSKCGS+ESA  +F  +S + +  W A+I   G HG    AL LF ++  
Sbjct: 343 CILGTAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAIIACCGTHGCGHDALALFQELNE 402

Query: 411 MGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLE 470
            G+KP   TF  +L+A SH+GLV +G+ +F+ MI ++GIEP  +HY C+VD+L R+G +E
Sbjct: 403 TGIKPDHATFASLLSALSHSGLVEEGKFWFDRMIKEFGIEPAEKHYVCIVDLLARSGLVE 462

Query: 471 EAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYA 530
           EA   + SM   P   IW+ LLSG  N+   ++GE  A  ++++ P+ IG   ++SN+YA
Sbjct: 463 EANDMLASMQTEPTIAIWVILLSGCLNNKKLELGETIAKKILELRPEDIGVLALVSNLYA 522

Query: 531 AAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRN 590
           AA +WDKV E+R++MK  G +K PG S IE +G  H FV+ D+SHPQ  EI   ++++ +
Sbjct: 523 AAKKWDKVREIRKLMKDSGSKKVPGYSLIEVKGTRHAFVMEDQSHPQHREILKMVAKLNS 582

Query: 591 KLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCN 650
           +++  G+VP T  V     D  E +  L  HSERLAIAFGL+N    + + I+KNLRVC 
Sbjct: 583 EMRKLGYVPRTEFV---YHDLDEDQL-LSYHSERLAIAFGLLNTSPGTRLVIIKNLRVCG 638

Query: 651 DCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           DCH   K +S I +REI+VRD  RFHHFK+G+CSC D+W
Sbjct: 639 DCHDAIKYISKIVDREIVVRDAKRFHHFKDGACSCGDYW 677



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 168/352 (47%), Gaps = 12/352 (3%)

Query: 157 KFVLSSLVSMYAKFGEIDLGRRVF--DAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
           + +LSSL + YA+ G +D               + +WN L+  + + G    A+++F  +
Sbjct: 40  QHILSSLAAAYARAGALDAAESTLAASPSSPSSIAAWNGLLSAHSRAGAPGAALRVFRAL 99

Query: 215 PDR---DLFSWTCLVDGFSKCGKVEIAREIFYRM----PNRNLVSWNAMINGYMKAGDVD 267
           P     +  ++T  +   ++ G ++ A  +  R        ++   +A+++ Y + G ++
Sbjct: 100 PSSARPNSTTFTLTLTACARLGDLDAAESVRVRAFAAGYGHDVFVCSALLHLYSRCGAME 159

Query: 268 SACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVA 327
            A  +FD M  +D + W++M+AG+   GR +EAL +   M    V  ++  +V  + A  
Sbjct: 160 EAIRVFDGMPRKDRVAWSTMVAGFVTAGRPVEALAMYSRMREHGVSDDEVVMVGVIQACM 219

Query: 328 GLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTA 387
                  G  +H  ++++   +D V  T L+ MY+K G ++ A  VFR +  +    W+A
Sbjct: 220 STGNARIGASVHGRLLRHCMRMDVVTTTSLVSMYAKNGHLDVACQVFRMMPYRNDVTWSA 279

Query: 388 MIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDY 447
           +I G   +G A +ALDLF ++   G++P +   +  L AC+  G +  G+     ++   
Sbjct: 280 LISGFAQNGRAVEALDLFRELQADGLQPCSWALVSALLACASVGFLKLGKSIHGFILRRL 339

Query: 448 GIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
             +  +     ++D+  + G LE A+     +  R + V+W ++++    HG
Sbjct: 340 EWQCILG--TAVLDMYSKCGSLESARKLFNKLSSR-DLVLWNAIIACCGTHG 388



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 101/407 (24%), Positives = 189/407 (46%), Gaps = 22/407 (5%)

Query: 55  ISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL 114
           + S LL LY       +  A  +FD  +     V ++ ++  +V   R  EAL ++  + 
Sbjct: 144 VCSALLHLY--SRCGAMEEAIRVFDG-MPRKDRVAWSTMVAGFVTAGRPVEALAMYSRMR 200

Query: 115 DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEID 174
           +  +  D   +  VI+     G  + G  +HG + +     D    +SLVSMYAK G +D
Sbjct: 201 EHGVSDDEVVMVGVIQACMSTGNARIGASVHGRLLRHCMRMDVVTTTSLVSMYAKNGHLD 260

Query: 175 LGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL--FSW-------TCL 225
           +  +VF  M  ++ V+W+ LI G+ + G    A+ LF E+    L   SW        C 
Sbjct: 261 VACQVFRMMPYRNDVTWSALISGFAQNGRAVEALDLFRELQADGLQPCSWALVSALLACA 320

Query: 226 VDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWN 285
             GF K GK  I   I  R+  + ++   A+++ Y K G ++SA +LF+ +  RDL+ WN
Sbjct: 321 SVGFLKLGK-SIHGFILRRLEWQCILG-TAVLDMYSKCGSLESARKLFNKLSSRDLVLWN 378

Query: 286 SMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGR-WMHSYIVK 344
           ++IA    +G   +AL L + +    + P+ AT  S LSA++   ++ +G+ W    I +
Sbjct: 379 AIIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSALSHSGLVEEGKFWFDRMIKE 438

Query: 345 NGFVVDGVLGTLLIQMYSKCGSIESALTVFRAI-SKKKVGHWTAMIVGLGMHGMATQALD 403
            G          ++ + ++ G +E A  +  ++ ++  +  W  ++ G     +  + L+
Sbjct: 439 FGIEPAEKHYVCIVDLLARSGLVEEANDMLASMQTEPTIAIWVILLSGC----LNNKKLE 494

Query: 404 LFNKMCR--MGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYG 448
           L   + +  + ++P  I  + +++    A    D  R    ++ D G
Sbjct: 495 LGETIAKKILELRPEDIGVLALVSNLYAAAKKWDKVREIRKLMKDSG 541


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 244/679 (35%), Positives = 394/679 (58%), Gaps = 25/679 (3%)

Query: 32  STHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYN 91
           + H   + +H  ++   L     +S+ LL +YV      L  A  IF   +    LV +N
Sbjct: 24  ADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVK--CACLPDAAHIF-ATMPARDLVAWN 80

Query: 92  LLIKCYVFNQRSHEALTLFCDLLDRF--LLPDNFTLPCVIKGAARLGAIKEGKQIHGLVF 149
            ++  Y  +   H A+     +  +   L P+  TL  ++   A+ GA+ +G  +H    
Sbjct: 81  AMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCI 140

Query: 150 KLGFGFDK----------FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYV 199
           +     ++           + ++L+ MYAK G +   RRVFDAM  ++ V+W+ LI G+V
Sbjct: 141 RACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFV 200

Query: 200 KKGEVEVAMKLFDEMPDRDL--FSWTCLVDGFSKCGKVEIAR--EIFYRMPNR-----NL 250
               +  A  LF  M  + L   S T +      C  ++  R  E  + +  +     +L
Sbjct: 201 LCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADL 260

Query: 251 VSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIG 310
            + N++++ Y KAG +D A  LFD+M ++D ++++++++GY  NGR  EA  + + M   
Sbjct: 261 TAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQAC 320

Query: 311 DVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESA 370
           +V P+ AT+VS + A + LA L  GR  H  ++  G   +  +   LI MY+KCG I+ +
Sbjct: 321 NVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLS 380

Query: 371 LTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHA 430
             VF  +  + +  W  MI G G+HG+  +A  LF +M  +G  P  +TFI +L+ACSH+
Sbjct: 381 RQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHS 440

Query: 431 GLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMS 490
           GLV +G+ +F++M + YG+ P +EHY C+VD+L R G+L+EA   I+SMP+R +  +W++
Sbjct: 441 GLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVA 500

Query: 491 LLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGF 550
           LL   R + N D+G+  +  + ++ P+  G +V+LSNIY+AAG++D+ +EVR + K +GF
Sbjct: 501 LLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGF 560

Query: 551 RKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIED 610
           +K PG S IE  G LH FV GD+SHPQ+ EI+ +L  +   +K  G+ PDT+ VL  +E+
Sbjct: 561 KKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEE 620

Query: 611 QKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVR 670
           +++++A L  HSE+LAIA+G++++     I + KNLRVC DCH+V K +S +  R IIVR
Sbjct: 621 EEKEKA-LICHSEKLAIAYGILSLSEDKTIFVTKNLRVCGDCHTVIKHISLVKRRAIIVR 679

Query: 671 DNSRFHHFKNGSCSCKDFW 689
           D +RFHHFKNG CSC DFW
Sbjct: 680 DANRFHHFKNGQCSCGDFW 698



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 87/199 (43%), Gaps = 12/199 (6%)

Query: 307 MLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGS 366
           ML   V PN+ T   AL A + LA  + GR +H + +  G   D  + T L+ MY KC  
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 367 IESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALD--LFNKMCRMGMKPTAITFIGVL 424
           +  A  +F  +  + +  W AM+ G   HGM   A+   L  +M    ++P A T + +L
Sbjct: 61  LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALL 120

Query: 425 NACSHAGLVNDGRRYFNMMI---------NDYGIEPTIEHYGCLVDILCRTGYLEEAKST 475
              +  G +  G       I         +   +   +     L+D+  + G L  A+  
Sbjct: 121 PLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRV 180

Query: 476 IESMPMRPNFVIWMSLLSG 494
            ++MP R N V W +L+ G
Sbjct: 181 FDAMPAR-NEVTWSALIGG 198


>gi|297802258|ref|XP_002869013.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314849|gb|EFH45272.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 693

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 244/707 (34%), Positives = 378/707 (53%), Gaps = 67/707 (9%)

Query: 32  STHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYN 91
           S  ++    H L  K+NL+  S  S +  S             +  FD  L+   +V+  
Sbjct: 5   SNARKLSTFHGLIFKSNLLSSSYASQKRFS------------DKKFFDSKLEDGGVVVER 52

Query: 92  LLIKCYVFNQRSHEALTLFC---------DLLDRFLLPDNFTLPCVIKGAARLGAIKEGK 142
           L   C     R  EA+ + C          LL R   P   T   +I+  ++  A++EGK
Sbjct: 53  L---CRA--NRFGEAIDVLCGQKLLREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGK 107

Query: 143 QIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKG 202
           ++H  +   GF     + + ++ MYAK G +   R+VFD M ++D+ SWN +++GY + G
Sbjct: 108 KVHEHIRTSGFVPGIVIWNRILGMYAKCGSLVDARKVFDEMPERDVCSWNVMVNGYAEVG 167

Query: 203 EVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIF---YRMPNR----------- 248
            +E A  LFDEMP+RD +SWT +V G+ K  + E A  ++    R+PN            
Sbjct: 168 LLEEARNLFDEMPERDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSKPNIFTVSSAV 227

Query: 249 --------------------------NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLI 282
                                     + V W+++++ Y K G +D A  +FD +  +D++
Sbjct: 228 AAAAAIKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIIDKDVV 287

Query: 283 TWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYI 342
           +W SMI  Y  + R+ E   L   ++     PN+ T    L+A A L     GR +H Y+
Sbjct: 288 SWTSMIDRYFKSSRWREGFSLFSELIGSCERPNEYTFSGVLNACADLTTEELGRQVHGYM 347

Query: 343 VKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQAL 402
            + GF       + LI MY+KCG+IESA  V     K  +   T++I G   +G   +AL
Sbjct: 348 TRVGFDPYSFASSSLIDMYTKCGNIESARHVVDGCPKPDLVSLTSLIGGYAQNGKPDEAL 407

Query: 403 DLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDI 462
             F+ + + G KP  +TF+ VL+AC+HAGLV  G  +F  +   + +  T +HY CLVD+
Sbjct: 408 KYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHDLTHTSDHYTCLVDL 467

Query: 463 LCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCY 522
           L R+G  E+ KS +  MPM+P+  +W S+L G   +GN D+ E AA  L K+ P+    Y
Sbjct: 468 LARSGRFEQLKSVLSEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTY 527

Query: 523 VVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIH 582
           V ++NIYAAAG+W++  ++R+ M++ G  K PGSS  E +   H F+  D SHP  ++I 
Sbjct: 528 VTMANIYAAAGKWEEEGKMRKRMQEIGITKKPGSSWTEIKRKRHVFIAADTSHPMYNQII 587

Query: 583 SKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRI 642
             L E+R K+K  G+VP T+ VL  +ED+ +KE  L  HSE+LA+AF +++ +  + I++
Sbjct: 588 EFLGELRKKMKEEGYVPATSLVLHDVEDE-QKEENLVYHSEKLAVAFAILSTEEGTAIKV 646

Query: 643 VKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            KNLR C DCHS  K +S I  R+I +RD++RFH F+NG CSC+D+W
Sbjct: 647 FKNLRSCVDCHSAIKFISKITKRKITIRDSTRFHCFENGQCSCRDYW 693


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 244/679 (35%), Positives = 394/679 (58%), Gaps = 25/679 (3%)

Query: 32  STHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYN 91
           + H   + +H  ++   L     +S+ LL +YV      L  A  IF  +     LV +N
Sbjct: 139 ADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVK--CACLPDAAHIFATMPAR-DLVAWN 195

Query: 92  LLIKCYVFNQRSHEALTLFCDLLDRF--LLPDNFTLPCVIKGAARLGAIKEGKQIHGLVF 149
            ++  Y  +   H A+     +  +   L P+  TL  ++   A+ GA+ +G  +H    
Sbjct: 196 AMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYRI 255

Query: 150 KLGFGFDK----------FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYV 199
           +     ++           + ++L+ MYAK G +   RRVFDAM  ++ V+W+ LI G+V
Sbjct: 256 RACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFV 315

Query: 200 KKGEVEVAMKLFDEMPDRDL--FSWTCLVDGFSKCGKVEIAR--EIFYRMPNR-----NL 250
               +  A  LF  M  + L   S T +      C  ++  R  E  + +  +     +L
Sbjct: 316 LCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADL 375

Query: 251 VSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIG 310
            + N++++ Y KAG +D A  LFD+M ++D ++++++++GY  NGR  EA  + + M   
Sbjct: 376 TAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQAC 435

Query: 311 DVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESA 370
           +V P+ AT+VS + A + LA L  GR  H  ++  G   +  +   LI MY+KCG I+ +
Sbjct: 436 NVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLS 495

Query: 371 LTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHA 430
             VF  +  + +  W  MI G G+HG+  +A  LF +M  +G  P  +TFI +L+ACSH+
Sbjct: 496 RQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHS 555

Query: 431 GLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMS 490
           GLV +G+ +F++M + YG+ P +EHY C+VD+L R G+L+EA   I+SMP+R +  +W++
Sbjct: 556 GLVIEGKHWFHVMRHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVA 615

Query: 491 LLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGF 550
           LL   R + N D+G+  +  + ++ P+  G +V+LSNIY+AAG++D+ +EVR + K +GF
Sbjct: 616 LLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGF 675

Query: 551 RKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIED 610
           +K PG S IE  G LH FV GD+SHPQ+ EI+ +L  +   +K  G+ PDT+ VL  +E+
Sbjct: 676 KKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEE 735

Query: 611 QKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVR 670
           +++++A L  HSE+LAIA+G++++     I + KNLRVC DCH+V K +S +  R IIVR
Sbjct: 736 EEKEKA-LICHSEKLAIAYGILSLSEDKTIFVTKNLRVCGDCHTVIKHISLLKRRAIIVR 794

Query: 671 DNSRFHHFKNGSCSCKDFW 689
           D +RFHHFKNG CSC DFW
Sbjct: 795 DANRFHHFKNGQCSCGDFW 813



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 132/490 (26%), Positives = 232/490 (47%), Gaps = 36/490 (7%)

Query: 67  HINNLHYARS--IFDRILQHPSLVLYNLLIKCYVFNQRSHEA--LTLFCDLLDRFLLPDN 122
           HI + H +R+  +FD+I   P +  YN LI+ Y  +  +  A  L L+  +L   + P+N
Sbjct: 67  HIASGHLSRAHHLFDQI-PSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNN 125

Query: 123 FTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDA 182
           +T P  +K  + L     G+ IH      G   D FV ++L+ MY K   +     +F  
Sbjct: 126 YTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFAT 185

Query: 183 MDDKDLVSWNCLIDGYVKKGE--------VEVAMKLFDEMPDRDLFSWTCLVDGFSKCGK 234
           M  +DLV+WN ++ GY   G         + + M++    P+    +   L+   ++ G 
Sbjct: 186 MPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNAS--TLVALLPLLAQQGA 243

Query: 235 VEIAREIF-YRM-----PNRNLVS--------WNAMINGYMKAGDVDSACELFDDMEIRD 280
           +     +  YR+      NRN  S          A+++ Y K G +  A  +FD M  R+
Sbjct: 244 LAQGTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARN 303

Query: 281 LITWNSMIAGYELNGRFMEALELLETMLI-GDVLPNDATLVSALSAVAGLAVLNKGRWMH 339
            +TW+++I G+ L  R  +A  L + ML  G    +  ++ SAL A A L  L  G  +H
Sbjct: 304 EVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLH 363

Query: 340 SYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMAT 399
           + + K+G   D   G  L+ MY+K G I+ A+ +F  ++ K    ++A++ G   +G A 
Sbjct: 364 ALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAE 423

Query: 400 QALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGR-RYFNMMINDYGIEPTIEHYGC 458
           +A  +F KM    ++P A T + ++ ACSH   +  GR  + +++I     E +I     
Sbjct: 424 EAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSI--CNA 481

Query: 459 LVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNH--GNKDIGEYAANNLIKVAP 516
           L+D+  + G ++ ++     MP R + V W ++++G   H  G +    +   N +   P
Sbjct: 482 LIDMYAKCGRIDLSRQVFNMMPSR-DIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPP 540

Query: 517 DTIGCYVVLS 526
           D +    +LS
Sbjct: 541 DGVTFICLLS 550


>gi|125532805|gb|EAY79370.1| hypothetical protein OsI_34497 [Oryza sativa Indica Group]
          Length = 681

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 234/609 (38%), Positives = 345/609 (56%), Gaps = 72/609 (11%)

Query: 120 PDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRV 179
           PD+ T    +   ARLG ++ G+ +    F  G+  D FV SSL+ +YA++G        
Sbjct: 106 PDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWG-------- 157

Query: 180 FDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAR 239
             AM D                     A+K+FD MP RD  +W+ +V GF   G+   A 
Sbjct: 158 --AMGD---------------------AVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAI 194

Query: 240 EIFYRM--------------------PNRNL-------------------VSWNAMINGY 260
           +++ RM                      RN+                   V+  ++++ Y
Sbjct: 195 QMYRRMREDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMY 254

Query: 261 MKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLV 320
            K G +D AC +F  M  R+ ++W++MI+G+  NG+  EAL L   M    + P+   LV
Sbjct: 255 AKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALV 314

Query: 321 SALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKK 380
           SAL A + +  L  GR +H +IV+  F  + +LGT  I MYSKCGS+ SA  +F  IS +
Sbjct: 315 SALLACSNIGFLKLGRSVHGFIVRR-FDFNCILGTAAIDMYSKCGSLASAQMLFNMISDR 373

Query: 381 KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYF 440
            +  W AMI   G HG    AL LF +M   GM+P   TF  +L+A SH+GLV +G+ +F
Sbjct: 374 DLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWF 433

Query: 441 NMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGN 500
             M+N + I P  +HY CLVD+L R+G +EEA   + SM   P   IW++LLSG  N+  
Sbjct: 434 GCMVNHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKK 493

Query: 501 KDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIE 560
            ++GE  A+N++++ PD +G   ++SN+YAA  +WDKV +VR++MK  G +K PG SSIE
Sbjct: 494 LELGESIADNILELQPDDVGVLALVSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIE 553

Query: 561 HRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELEN 620
            RG  H F++ D+SHPQ +EI SK++++  +++  G++P T  V   +E++  KE +L  
Sbjct: 554 IRGTRHAFLMEDQSHPQREEIVSKVAKLDLEMRKMGYIPRTEFVYHDLEEEV-KEQQLSY 612

Query: 621 HSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKN 680
           HSE+LAIAFGL+N    + + I+KNLRVC DCH   K +S I +REI+VRD  RFHHFK+
Sbjct: 613 HSEKLAIAFGLLNTGPGTRLVIIKNLRVCGDCHDAIKYISKIADREIVVRDAKRFHHFKD 672

Query: 681 GSCSCKDFW 689
           G CSC+D+W
Sbjct: 673 GVCSCRDYW 681


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 246/631 (38%), Positives = 359/631 (56%), Gaps = 19/631 (3%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           A  +FD+I + P LV YN LI  Y     +  AL LF  + +  L  D FTL  VI    
Sbjct: 93  AHQLFDQIPE-PDLVSYNTLISAYADCGETAPALGLFSGMREMGLDMDGFTLSAVITACC 151

Query: 134 R-LGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD-KDLVSW 191
             +G I    Q+H +    GF     V ++L++ Y K G++D  +RVF  M   +D VSW
Sbjct: 152 DDVGLIG---QLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSW 208

Query: 192 NCLIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFS----KCGKVEIAREIFY 243
           N +I  Y +  E   A+ LF EM  R    D+F+   ++  F+      G ++   ++  
Sbjct: 209 NSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIK 268

Query: 244 RMPNRNLVSWNAMINGYMKAGDVDSAC-ELFDDMEIRDLITWNSMIAGYELNGRFME-AL 301
              ++N    + +I+ Y K G   S C ++F+++   DL+ WN+M++GY  N  F+E AL
Sbjct: 269 TGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDAL 328

Query: 302 ELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV-LGTLLIQM 360
           E    M      PND + V  +SA + L+  ++G+ +HS  +K+    + + +   LI M
Sbjct: 329 ECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAM 388

Query: 361 YSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITF 420
           YSKCG+++ A  +F  +++       +MI G   HG+  ++L LF  M    + PT+ITF
Sbjct: 389 YSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITF 448

Query: 421 IGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP 480
           I VL+AC+H G V +G  YFNMM   + IEP  EHY C++D+L R G L EA++ I  MP
Sbjct: 449 ISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMP 508

Query: 481 MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSE 540
             P  + W SLL   R HGN ++   AAN ++++ P     YVVLSN+YA+AG+W++V+ 
Sbjct: 509 FNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEEVAT 568

Query: 541 VREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPD 600
           VR+ M+ RG +K PG S IE +  +H FV  D SHP   EI+  L EM  K+K AG+VPD
Sbjct: 569 VRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSSHPMIKEIYEFLEEMSGKMKRAGYVPD 628

Query: 601 TTQVLLCIEDQK--EKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKL 658
               L+  +  +  EKE  L +HSE+LA+AFGLI+ K   P+ +VKNLR+C DCH+  K 
Sbjct: 629 VRWALVKDDGTRGGEKEIRLGHHSEKLAVAFGLISTKDGEPVLVVKNLRICGDCHNAIKF 688

Query: 659 LSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           +S I  REI VRD  RFH FK G CSC D+W
Sbjct: 689 ISAIAGREITVRDAHRFHCFKEGQCSCGDYW 719



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 119/459 (25%), Positives = 209/459 (45%), Gaps = 45/459 (9%)

Query: 138 IKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDG 197
           +  GK +H L  K       +  +  + +Y+K G +   R+ F  + D ++ S+N +I  
Sbjct: 24  LSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPNVFSFNAIIAA 83

Query: 198 YVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNL------- 250
           Y K+    +A +LFD++P+ DL S+  L+  ++ CG+   A  +F  M    L       
Sbjct: 84  YAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDMDGFTL 143

Query: 251 ---------------------VSW---------NAMINGYMKAGDVDSACELFDDM-EIR 279
                                VS          NA++  Y K GD+D A  +F  M  IR
Sbjct: 144 SAVITACCDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIR 203

Query: 280 DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMH 339
           D ++WNSMI  Y  +    +AL L + M+   +  +  TL S L+A   L  L+ G   H
Sbjct: 204 DEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFH 263

Query: 340 SYIVKNGFVVDGVLGTLLIQMYSKC-GSIESALTVFRAISKKKVGHWTAMIVGLGMH-GM 397
             ++K GF  +  +G+ LI +YSKC G +     VF  I++  +  W  M+ G   +   
Sbjct: 264 GQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEF 323

Query: 398 ATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYG 457
              AL+ F +M  +G +P   +F+ V++ACS+    + G++  ++ +        I    
Sbjct: 324 LEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDN 383

Query: 458 CLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLI--KVA 515
            L+ +  + G L++A+   + M    N V   S+++G   HG +    +    ++  ++A
Sbjct: 384 ALIAMYSKCGNLQDARRLFDRMA-EHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIA 442

Query: 516 PDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDP 554
           P +I    VLS   A  G+ ++      MMK++ F  +P
Sbjct: 443 PTSITFISVLSAC-AHTGRVEEGWNYFNMMKEK-FNIEP 479



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 144/318 (45%), Gaps = 20/318 (6%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYV 98
           Q H   +KT    +S + S L+ LY       +   R +F+ I + P LVL+N ++  Y 
Sbjct: 261 QFHGQLIKTGFHQNSHVGSGLIDLYSKCG-GGMSDCRKVFEEITE-PDLVLWNTMVSGYS 318

Query: 99  FNQRSHE-ALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
            N+   E AL  F  +      P++ +  CVI   + L +  +GKQIH L  K     ++
Sbjct: 319 QNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNR 378

Query: 158 F-VLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD 216
             V ++L++MY+K G +   RR+FD M + + VS N +I GY + G    ++ LF  M +
Sbjct: 379 ISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLE 438

Query: 217 RDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS-----WNAMINGYMKAGDVD 267
           R +     ++  ++   +  G+VE     F  M  +  +      ++ MI+   +AG + 
Sbjct: 439 RQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLS 498

Query: 268 SACELFDDMEIRD-LITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326
            A  L   M      I W S++     +G    A++    +L   + P++A     LS +
Sbjct: 499 EAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVL--QLEPSNAAPYVVLSNM 556

Query: 327 AGLAVLNKGRWMHSYIVK 344
              A    GRW     V+
Sbjct: 557 YASA----GRWEEVATVR 570


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 243/692 (35%), Positives = 377/692 (54%), Gaps = 76/692 (10%)

Query: 70  NLHYARSIFDRILQH--PSLVLYNLLIKCYVFNQRSHEALTLFCDLL---------DRFL 118
           +L  A  +FD I +     ++ +N ++  +V       AL LF ++          +R  
Sbjct: 199 SLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNER-- 256

Query: 119 LPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRR 178
             D  ++  ++   A L A+ + K+IH    + G   D FV ++L+  YAK G +     
Sbjct: 257 -SDIISIVNILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVN 315

Query: 179 VFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGK 234
           VF+ M+ KD+VSWN ++ GY + G+   A +LF  M       D+ +W+ ++ G+++ G 
Sbjct: 316 VFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGY 375

Query: 235 VEIAREIFYRM------PNR---------------------------------------- 248
            + A + F +M      PN                                         
Sbjct: 376 GQEALDTFQQMILYGSEPNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGG 435

Query: 249 -----NLVSWNAMINGYMKAGDVDSACELFDDMEIRD--LITWNSMIAGYELNGRFMEAL 301
                +LV  NA+I+ Y K     +A  +F+ +  R+  ++TW  MI GY   G   +AL
Sbjct: 436 DGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDAL 495

Query: 302 ELLETMLIGD--VLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV--LGTLL 357
           +L   M+     V PN  T+   L A A L+ L  G+ +H+Y+ ++      V  +   L
Sbjct: 496 KLFSEMISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCL 555

Query: 358 IQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA 417
           I MYSKCG +++A  VF ++ K+    WT+M+ G GMHG   +ALD+F+KM + G  P  
Sbjct: 556 IDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDD 615

Query: 418 ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIE 477
           I+F+ +L ACSH+G+V+ G  YF++M +DYG+  + +HY C++D+L R+G L++A  TI+
Sbjct: 616 ISFLVLLYACSHSGMVDQGLDYFDIMRSDYGVIASAQHYACVIDLLARSGRLDKAWKTIQ 675

Query: 478 SMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDK 537
            MPM P+  IW++LLS  R H N ++ EYA N L+ +  +  G Y ++SNIYA A +W  
Sbjct: 676 EMPMEPSAAIWVALLSACRVHSNVELAEYALNKLVSMKAENDGSYTLISNIYATARRWKD 735

Query: 538 VSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGH 597
           V+ +R++MKK G +K PG S ++ +     F VGD+SHP + EI+S L  +  ++K  G+
Sbjct: 736 VARIRQLMKKSGIKKRPGCSWVQGKKGTASFFVGDRSHPLSPEIYSLLERLIGRIKVMGY 795

Query: 598 VPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTK 657
           VP+T   L  ++D+ EK   L  HSE+LA+A+GL+      PIRI KNLRVC DCHS   
Sbjct: 796 VPETNFALHDVDDE-EKNNLLTEHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFI 854

Query: 658 LLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            +S I + EIIVRD+SRFHHFKNGSCSC  +W
Sbjct: 855 YISKIVDHEIIVRDSSRFHHFKNGSCSCGGYW 886



 Score =  233 bits (595), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 151/495 (30%), Positives = 245/495 (49%), Gaps = 71/495 (14%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           A S+ +R++  P+ V +NLL++ ++   R   A+ + C +L     PD+FTLP  +K   
Sbjct: 102 ALSVLERVVPSPA-VWWNLLVRAHIEEGRLDRAIGVSCRMLRAGTKPDHFTLPYALKACG 160

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK---DLVS 190
            L + + G   HGL+   GF  + FV ++LV+MY++ G ++    VFD +  K   D++S
Sbjct: 161 ELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLVFDEITRKGIDDVIS 220

Query: 191 WNCLIDGYVKKGEVEVAMKLFDEMPD---------------------------------- 216
           WN ++  +VK      A+ LF EM                                    
Sbjct: 221 WNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILPACASLKALPQTKE 280

Query: 217 -----------RDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGD 265
                       D F    L+D ++KCG ++ A  +F  M  +++VSWNAM+ GY ++G 
Sbjct: 281 IHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGK 340

Query: 266 VDSACELFDDMEIR----DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVS 321
             +A ELF +M       D+ITW+++IAGY   G   EAL+  + M++    PN  T++S
Sbjct: 341 FGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSVTIIS 400

Query: 322 ALSAVAGLAVLNKGRWMHSYIVKNGFV------------VDGVLGTLLIQMYSKCGSIES 369
            LSA A L  L++G   H+Y +K   +             D V+   LI MYSKC S ++
Sbjct: 401 LLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKA 460

Query: 370 ALTVFRAISKKK--VGHWTAMIVGLGMHGMATQALDLFNKMCR--MGMKPTAITFIGVLN 425
           A T+F +I +++  V  WT MI G   +G +  AL LF++M      + P A T   +L 
Sbjct: 461 ARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILM 520

Query: 426 ACSHAGLVNDGRRYFNMMINDYGIEPTIEHYG-CLVDILCRTGYLEEAKSTIESMPMRPN 484
           AC+H   +  G++    +   +  E ++     CL+D+  + G ++ A++  +SMP R N
Sbjct: 521 ACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMPKR-N 579

Query: 485 FVIWMSLLSGARNHG 499
            V W S++SG   HG
Sbjct: 580 EVSWTSMMSGYGMHG 594



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 101/442 (22%), Positives = 184/442 (41%), Gaps = 88/442 (19%)

Query: 161 SSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVE----VAMKLFDEMPD 216
           + +V+ Y   G       V + +     V WN L+  ++++G ++    V+ ++      
Sbjct: 87  TGVVASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRAGTK 146

Query: 217 RDLFSWTCLVDGFSKCGKVEIARE-------IFYRMPNRNLVSWNAMINGYMKAGDVDSA 269
            D F+   L      CG++   R        I       N+   NA++  Y ++G ++ A
Sbjct: 147 PDHFT---LPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDA 203

Query: 270 CELFDDME---IRDLITWNSMIAGYELNGRFMEALELLETM--LIGDVLPND----ATLV 320
             +FD++    I D+I+WNS++A +        AL+L   M  ++ +   N+     ++V
Sbjct: 204 SLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIV 263

Query: 321 SALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKK 380
           + L A A L  L + + +HSY ++NG   D  +   LI  Y+KCGS++ A+ VF  +  K
Sbjct: 264 NILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFK 323

Query: 381 KVGHWTAM-----------------------------------IVGLGMHGMATQALDLF 405
            V  W AM                                   I G    G   +ALD F
Sbjct: 324 DVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTF 383

Query: 406 NKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEH---------- 455
            +M   G +P ++T I +L+AC+  G ++ G     M  + Y ++  +            
Sbjct: 384 QQMILYGSEPNSVTIISLLSACASLGALSQG-----METHAYSLKKCLLSLDNDFGGDGD 438

Query: 456 ------YGCLVDILCRTGYLEEAKSTIESMPMRP-NFVIWMSLLSGARNHGNKDIGEYAA 508
                 +  L+D+  +    + A++   S+P R  N V W  ++ G   +G+       +
Sbjct: 439 GEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGD-------S 491

Query: 509 NNLIKVAPDTIG-CYVVLSNIY 529
           N+ +K+  + I   Y V  N Y
Sbjct: 492 NDALKLFSEMISKPYAVAPNAY 513



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 94/452 (20%), Positives = 188/452 (41%), Gaps = 69/452 (15%)

Query: 26  NILKFSSTHK---ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRIL 82
           NIL   ++ K   +T+++H+ +++      + + + L+  Y      ++  A ++F+ ++
Sbjct: 264 NILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAK--CGSMKDAVNVFN-VM 320

Query: 83  QHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGK 142
           +   +V +N ++  Y  + +   A  LF ++    +  D  T   VI G A+ G  +E  
Sbjct: 321 EFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEAL 380

Query: 143 QIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSW----------- 191
                +   G   +   + SL+S  A  G +  G         K L+S            
Sbjct: 381 DTFQQMILYGSEPNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGE 440

Query: 192 -----NCLIDGYVKKGEVEVAMKLFDEMP--DRDLFSWTCLVDGFSKCGKVEIAREIFYR 244
                N LID Y K    + A  +F+ +P  +R++ +WT ++ G+++ G    A ++F  
Sbjct: 441 DLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSE 500

Query: 245 M--------PNRNLVSW-----------------------------------NAMINGYM 261
           M        PN   +S                                    N +I+ Y 
Sbjct: 501 MISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYS 560

Query: 262 KAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVS 321
           K GDVD+A  +FD M  R+ ++W SM++GY ++GR  EAL++ + M     +P+D + + 
Sbjct: 561 KCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLV 620

Query: 322 ALSAVAGLAVLNKGRWMHSYIVKN-GFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS-K 379
            L A +   ++++G      +  + G +        +I + ++ G ++ A    + +  +
Sbjct: 621 LLYACSHSGMVDQGLDYFDIMRSDYGVIASAQHYACVIDLLARSGRLDKAWKTIQEMPME 680

Query: 380 KKVGHWTAMIVGLGMHGMATQALDLFNKMCRM 411
                W A++    +H     A    NK+  M
Sbjct: 681 PSAAIWVALLSACRVHSNVELAEYALNKLVSM 712



 Score = 47.8 bits (112), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 63/152 (41%), Gaps = 3/152 (1%)

Query: 345 NGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDL 404
           + +V    LGT ++  Y  CG+   AL+V   +       W  ++      G   +A+ +
Sbjct: 77  HSYVSPKSLGTGVVASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGV 136

Query: 405 FNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILC 464
             +M R G KP   T    L AC        G  +  ++  + G E  +     LV +  
Sbjct: 137 SCRMLRAGTKPDHFTLPYALKACGELPSYRSGSAFHGLICCN-GFESNVFVCNALVAMYS 195

Query: 465 RTGYLEEAKSTIESMPMR--PNFVIWMSLLSG 494
           R+G LE+A    + +  +   + + W S+++ 
Sbjct: 196 RSGSLEDASLVFDEITRKGIDDVISWNSIVAA 227


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 246/631 (38%), Positives = 359/631 (56%), Gaps = 19/631 (3%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           A  +FD+I + P LV YN LI  Y     +  AL LF  + +  L  D FTL  VI    
Sbjct: 93  AHQLFDQIPE-PDLVSYNTLISAYADCGETAPALGLFSGMREMGLDMDXFTLSAVITACC 151

Query: 134 R-LGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD-KDLVSW 191
             +G I    Q+H +    GF     V ++L++ Y K G++D  +RVF  M   +D VSW
Sbjct: 152 DDVGLIG---QLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSW 208

Query: 192 NCLIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFS----KCGKVEIAREIFY 243
           N +I  Y +  E   A+ LF EM  R    D+F+   ++  F+      G ++   ++  
Sbjct: 209 NSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIK 268

Query: 244 RMPNRNLVSWNAMINGYMKAGDVDSAC-ELFDDMEIRDLITWNSMIAGYELNGRFME-AL 301
              ++N    + +I+ Y K G   S C ++F+++   DL+ WN+M++GY  N  F+E AL
Sbjct: 269 TGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDAL 328

Query: 302 ELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV-LGTLLIQM 360
           E    M      PND + V  +SA + L+  ++G+ +HS  +K+    + + +   LI M
Sbjct: 329 ECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAM 388

Query: 361 YSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITF 420
           YSKCG+++ A  +F  +++       +MI G   HG+  ++L LF  M    + PT+ITF
Sbjct: 389 YSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITF 448

Query: 421 IGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP 480
           I VL+AC+H G V +G  YFNMM   + IEP  EHY C++D+L R G L EA++ I  MP
Sbjct: 449 ISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMP 508

Query: 481 MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSE 540
             P  + W SLL   R HGN ++   AAN ++++ P     YVVLSN+YA+AG+W++V+ 
Sbjct: 509 FNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEEVAT 568

Query: 541 VREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPD 600
           VR+ M+ RG +K PG S IE +  +H FV  D SHP   EI+  L EM  K+K AG+VPD
Sbjct: 569 VRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSSHPMIKEIYEFLEEMSGKMKRAGYVPD 628

Query: 601 TTQVLLCIEDQK--EKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKL 658
               L+  +  +  EKE  L +HSE+LA+AFGLI+ K   P+ +VKNLR+C DCH+  K 
Sbjct: 629 VRWALVKDDGTRGGEKEIRLGHHSEKLAVAFGLISTKDGEPVLVVKNLRICGDCHNAIKF 688

Query: 659 LSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           +S I  REI VRD  RFH FK G CSC D+W
Sbjct: 689 ISAIAGREITVRDAHRFHCFKEGQCSCGDYW 719



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 119/459 (25%), Positives = 209/459 (45%), Gaps = 45/459 (9%)

Query: 138 IKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDG 197
           +  GK +H L  K       +  +  + +Y+K G +   R+ F  + D ++ S+N +I  
Sbjct: 24  LSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPNVFSFNAIIAA 83

Query: 198 YVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNL------- 250
           Y K+    +A +LFD++P+ DL S+  L+  ++ CG+   A  +F  M    L       
Sbjct: 84  YAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDMDXFTL 143

Query: 251 ---------------------VSW---------NAMINGYMKAGDVDSACELFDDM-EIR 279
                                VS          NA++  Y K GD+D A  +F  M  IR
Sbjct: 144 SAVITACCDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIR 203

Query: 280 DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMH 339
           D ++WNSMI  Y  +    +AL L + M+   +  +  TL S L+A   L  L+ G   H
Sbjct: 204 DEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFH 263

Query: 340 SYIVKNGFVVDGVLGTLLIQMYSKC-GSIESALTVFRAISKKKVGHWTAMIVGLGMH-GM 397
             ++K GF  +  +G+ LI +YSKC G +     VF  I++  +  W  M+ G   +   
Sbjct: 264 GQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEF 323

Query: 398 ATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYG 457
              AL+ F +M  +G +P   +F+ V++ACS+    + G++  ++ +        I    
Sbjct: 324 LEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDN 383

Query: 458 CLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLI--KVA 515
            L+ +  + G L++A+   + M    N V   S+++G   HG +    +    ++  ++A
Sbjct: 384 ALIAMYSKCGNLQDARRLFDRMA-EHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIA 442

Query: 516 PDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDP 554
           P +I    VLS   A  G+ ++      MMK++ F  +P
Sbjct: 443 PTSITFISVLSAC-AHTGRVEEGWNYFNMMKEK-FNIEP 479



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 144/318 (45%), Gaps = 20/318 (6%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYV 98
           Q H   +KT    +S + S L+ LY       +   R +F+ I + P LVL+N ++  Y 
Sbjct: 261 QFHGQLIKTGFHQNSHVGSGLIDLYSKCG-GGMSDCRKVFEEITE-PDLVLWNTMVSGYS 318

Query: 99  FNQRSHE-ALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
            N+   E AL  F  +      P++ +  CVI   + L +  +GKQIH L  K     ++
Sbjct: 319 QNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNR 378

Query: 158 F-VLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD 216
             V ++L++MY+K G +   RR+FD M + + VS N +I GY + G    ++ LF  M +
Sbjct: 379 ISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLE 438

Query: 217 RDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS-----WNAMINGYMKAGDVD 267
           R +     ++  ++   +  G+VE     F  M  +  +      ++ MI+   +AG + 
Sbjct: 439 RQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLS 498

Query: 268 SACELFDDMEIRD-LITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326
            A  L   M      I W S++     +G    A++    +L   + P++A     LS +
Sbjct: 499 EAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVL--QLEPSNAAPYVVLSNM 556

Query: 327 AGLAVLNKGRWMHSYIVK 344
              A    GRW     V+
Sbjct: 557 YASA----GRWEEVATVR 570


>gi|414865824|tpg|DAA44381.1| TPA: hypothetical protein ZEAMMB73_039747 [Zea mays]
          Length = 645

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 232/566 (40%), Positives = 337/566 (59%), Gaps = 16/566 (2%)

Query: 137 AIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK-DLVSWNCLI 195
           A++ G+Q+H  +   G G D  + + LV +YA  G + L RRVFD M ++ ++  WN LI
Sbjct: 83  AVRPGRQLHARLLVSGTGLDAVLATRLVDLYASCGHVSLARRVFDEMPNQGNVFLWNVLI 142

Query: 196 DGYVKKGEVEVAMKLFDEM-------PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR 248
             Y + G  E A++L+  M       PD   F++  ++   +    +   RE+  R+   
Sbjct: 143 RAYARDGPCEAAIELYRAMLAYGSMKPDN--FTYPPVLKACAALLDLSAGREVHDRVMRT 200

Query: 249 NLVS----WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELL 304
           N  +       +I+ Y K G +D A  +F+D  IRD   WNSMIA    NGR  EAL L 
Sbjct: 201 NWATDVFVCTGLIDMYAKCGCMDEAWAVFNDTTIRDAAVWNSMIAACGQNGRPAEALTLC 260

Query: 305 ETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKC 364
             M    + P  ATLVSA+SA A  + L +GR +H Y  + GF     L T L+ MY+K 
Sbjct: 261 RNMAAEGIAPTIATLVSAISAAAVASALPRGRELHGYGWRRGFGSQDKLKTSLLDMYAKS 320

Query: 365 GSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKM-CRMGMKPTAITFIGV 423
           G +  A  +F  +  +++  W AMI G GMHG A  A +LF++M     + P  ITF+GV
Sbjct: 321 GWVMVAHVLFEQLLHRELISWNAMICGFGMHGHADHAFELFSRMRSEAQVMPDHITFVGV 380

Query: 424 LNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRP 483
           L+AC+H G+V + +  F++M+  Y I+PT++HY CLVD+L  +G  +EA   I+ M ++P
Sbjct: 381 LSACNHGGMVQEAKEVFDLMVTVYSIKPTVQHYTCLVDVLGHSGRFKEASDVIKGMLVKP 440

Query: 484 NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVRE 543
           +  IW +LL+G + H N ++ E A   LI++ P+  G YV+LSNIYA +G+W++ + VR+
Sbjct: 441 DSGIWGALLNGCKIHKNVELAELALQKLIELEPEDAGNYVLLSNIYAESGKWEEAARVRK 500

Query: 544 MMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQ 603
           +M  RG +K    S IE +G  H F+VGD SHP++D+I+ +L  +   +   G+VPDTT 
Sbjct: 501 LMTNRGLKKIIACSWIELKGKFHGFLVGDASHPRSDDIYEELERLEGLISQTGYVPDTTP 560

Query: 604 VLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIY 663
           V   +ED  EK   +  HSERLAIAFGLI+   R+ + + KNLRVC DCH V KL+S I 
Sbjct: 561 VFHNVEDD-EKRNMVWGHSERLAIAFGLISTPPRTKLLVTKNLRVCEDCHVVIKLISQIE 619

Query: 664 NREIIVRDNSRFHHFKNGSCSCKDFW 689
            REII+RD +R+HHF NG CSCKD W
Sbjct: 620 QREIIIRDVNRYHHFVNGECSCKDHW 645



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 101/376 (26%), Positives = 166/376 (44%), Gaps = 54/376 (14%)

Query: 30  FSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVL 89
            S   +  +QLHA  + +     + +++RL+ LY      ++  AR +FD +    ++ L
Sbjct: 80  LSRAVRPGRQLHARLLVSGTGLDAVLATRLVDLYAS--CGHVSLARRVFDEMPNQGNVFL 137

Query: 90  YNLLIKCYVFNQRSHEALTLFCDLLDR-FLLPDNFTLPCVIKGAARLGAIKEGKQIHGLV 148
           +N+LI+ Y  +     A+ L+  +L    + PDNFT P V+K  A L  +  G+++H  V
Sbjct: 138 WNVLIRAYARDGPCEAAIELYRAMLAYGSMKPDNFTYPPVLKACAALLDLSAGREVHDRV 197

Query: 149 FKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAM 208
            +  +  D FV + L+ MYAK G +D    VF+    +D   WN +I    + G    A+
Sbjct: 198 MRTNWATDVFVCTGLIDMYAKCGCMDEAWAVFNDTTIRDAAVWNSMIAACGQNGRPAEAL 257

Query: 209 KLFDEMP--------------------------DRDL--FSW-----------TCLVDGF 229
            L   M                            R+L  + W           T L+D +
Sbjct: 258 TLCRNMAAEGIAPTIATLVSAISAAAVASALPRGRELHGYGWRRGFGSQDKLKTSLLDMY 317

Query: 230 SKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDME-----IRDLITW 284
           +K G V +A  +F ++ +R L+SWNAMI G+   G  D A ELF  M      + D IT+
Sbjct: 318 AKSGWVMVAHVLFEQLLHRELISWNAMICGFGMHGHADHAFELFSRMRSEAQVMPDHITF 377

Query: 285 NSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVK 344
             +++     G   EA E+ + M+    +       + L  V G    + GR+  +  V 
Sbjct: 378 VGVLSACNHGGMVQEAKEVFDLMVTVYSIKPTVQHYTCLVDVLG----HSGRFKEASDVI 433

Query: 345 NGFVV---DGVLGTLL 357
            G +V    G+ G LL
Sbjct: 434 KGMLVKPDSGIWGALL 449



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 147/323 (45%), Gaps = 30/323 (9%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +++H   ++TN      + + L+ +Y       +  A ++F+      + V +N +I   
Sbjct: 191 REVHDRVMRTNWATDVFVCTGLIDMYAK--CGCMDEAWAVFNDTTIRDAAV-WNSMIAAC 247

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
             N R  EALTL  ++    + P   TL   I  AA   A+  G+++HG  ++ GFG   
Sbjct: 248 GQNGRPAEALTLCRNMAAEGIAPTIATLVSAISAAAVASALPRGRELHGYGWRRGFGSQD 307

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDE---- 213
            + +SL+ MYAK G + +   +F+ +  ++L+SWN +I G+   G  + A +LF      
Sbjct: 308 KLKTSLLDMYAKSGWVMVAHVLFEQLLHRELISWNAMICGFGMHGHADHAFELFSRMRSE 367

Query: 214 ---MPDRDLFSWTCLVDGFSKC---GKVEIAREIFYRMPN-----RNLVSWNAMINGYMK 262
              MPD   F     V   S C   G V+ A+E+F  M         +  +  +++    
Sbjct: 368 AQVMPDHITF-----VGVLSACNHGGMVQEAKEVFDLMVTVYSIKPTVQHYTCLVDVLGH 422

Query: 263 AGDVDSACELFDDMEIR-DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVS 321
           +G    A ++   M ++ D   W +++ G +++ + +E  EL    LI ++ P DA    
Sbjct: 423 SGRFKEASDVIKGMLVKPDSGIWGALLNGCKIH-KNVELAELALQKLI-ELEPEDAGNYV 480

Query: 322 ALSAVAGLAVLNKGRWMHSYIVK 344
            LS +        G+W  +  V+
Sbjct: 481 LLSNIYA----ESGKWEEAARVR 499


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 249/685 (36%), Positives = 389/685 (56%), Gaps = 29/685 (4%)

Query: 30  FSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVL 89
            S + ++ +QLHA  VKT    HS     +L L +  ++N L ++  +F+ +   P  + 
Sbjct: 21  LSVSTRQAKQLHAHIVKTKGTLHS---DNILVLSLYSNLNLLQHSLHLFNSLPSPPPPLA 77

Query: 90  YNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVF 149
           ++ +IKCY  +   H + + F  +    + P+    P ++K +  L   K    +H    
Sbjct: 78  WSSIIKCYTSHSLLHLSFSSFNSMRSLSVPPNRHVFPSLLKASTLLKHHKLAHSLHACTV 137

Query: 150 KLGFGFDKFVLSSLVSMYAKF-------------GE--IDLGRRVFDAMDDKDLVSWNCL 194
           +LG   D ++ ++L++ YAKF             GE  ID  ++VFD M  +D+VSWN +
Sbjct: 138 RLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSWNTV 197

Query: 195 IDGYVKKGEVEVAMKLFDEMPDR-----DLFSWTCLVDGFSKCGKVEIAREIF-YRMPNR 248
           I G+ + G    A+ +  EM        D F+ + ++  F++   V   +EI  Y + N 
Sbjct: 198 IAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHGYAVRNG 257

Query: 249 ---NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLE 305
              ++   +++I+ Y K   ++ +   F  +  +D I+WNS+IAG   NG F   L    
Sbjct: 258 FDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQNGEFDRGLGFFR 317

Query: 306 TMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCG 365
            ML  +V P   +  S + A A L  L+ GR +H  IV+ GF  +  + + L+ MY+KCG
Sbjct: 318 RMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDDNEFIASSLVDMYAKCG 377

Query: 366 SIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN 425
           +I+ A  VF  I K+ +  WTA+I+G  MHG A  A+ LF  M   G++P  + F+ VL 
Sbjct: 378 NIKMARYVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLFENMLEDGVRPCYVAFMAVLT 437

Query: 426 ACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP-MRPN 484
           ACSHAGLV++G RYFN M  D+GI P +EHY  + D+L R G LEEA   I +M  ++P 
Sbjct: 438 ACSHAGLVDEGWRYFNSMERDFGIAPGLEHYAAVADLLGRAGRLEEAYDFISNMRGVQPT 497

Query: 485 FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREM 544
             +W  LL+  R H + ++ E   + L+ V  + +G YV++SNIY+AA +W   + +R  
Sbjct: 498 GSVWSILLAACRAHKSVELAEKVLDKLLSVDSENMGAYVLMSNIYSAAQRWKDAARLRIH 557

Query: 545 MKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQV 604
           M+K+G +K P  S IE    +H F+ GDKSHP  D+I+  L  +  +++  G+V DT QV
Sbjct: 558 MRKKGLKKTPACSWIEVGNQVHTFMAGDKSHPYYDKINKALDVLLEQMEKEGYVIDTNQV 617

Query: 605 LLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYN 664
           L  ++++ ++E  L NHSERLAIA+G+I+  + + IR++KN+RVC DCH+  K ++ I  
Sbjct: 618 LHDVDEELKREL-LHNHSERLAIAYGIISTTAGTTIRVIKNIRVCADCHTAIKFITKIVG 676

Query: 665 REIIVRDNSRFHHFKNGSCSCKDFW 689
           REI VRDNSRFHHFKNGSCSC D+W
Sbjct: 677 REITVRDNSRFHHFKNGSCSCGDYW 701


>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 952

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 245/698 (35%), Positives = 377/698 (54%), Gaps = 47/698 (6%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           K  + +H  ++K  ++ +  +S+ L++LY       +  A+++FD ++ H +++ +N L 
Sbjct: 259 KSGKAIHGFALKHGMVENVFVSNALVNLY--ESCLCVREAQAVFD-LMPHRNVITWNSLA 315

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
            CYV      + L +F ++    + PD   +  ++   ++L  +K GK IHG   K G  
Sbjct: 316 SCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMV 375

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
            D FV ++LV++YA    +   + VFD M  +++V+WN L   YV  G  +  + +F EM
Sbjct: 376 EDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFREM 435

Query: 215 ------PD---------------------------------RDLFSWTCLVDGFSKCGKV 235
                 PD                                  D+F    L+  ++KC  V
Sbjct: 436 VLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRHGMVEDVFVCNALLSLYAKCVCV 495

Query: 236 EIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDM---EIR-DLITWNSMIAGY 291
             A+ +F  +P+R + SWN ++  Y    + +    +F  M   E++ D ITW+ +I G 
Sbjct: 496 REAQVVFDLIPHREVASWNGILTAYFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIGGC 555

Query: 292 ELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDG 351
             N R  EA+E+   M      P++ T+ S L A +    L  G+ +H Y+ ++    D 
Sbjct: 556 VKNSRIEEAMEIFRKMQTMGFKPDETTIYSILRACSLSECLRMGKEIHCYVFRHWKDWDL 615

Query: 352 VLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRM 411
                L+ MY+KCG +  +  VF  +  K V  W  MI   GMHG   +AL LF KM   
Sbjct: 616 ARTNALVDMYAKCGGLSLSRNVFDMMPIKDVFSWNTMIFANGMHGNGKEALSLFEKMLLS 675

Query: 412 GMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEE 471
            +KP + TF  VL+ACSH+ LV +G + FN M  D+ +EP  EHY C+VDI  R G LEE
Sbjct: 676 MVKPDSATFTCVLSACSHSMLVEEGVQIFNSMSRDHLVEPEAEHYTCVVDIYSRAGCLEE 735

Query: 472 AKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAA 531
           A   I+ MPM P  + W + L+G R + N ++ + +A  L ++ P+    YV L NI   
Sbjct: 736 AYGFIQRMPMEPTAIAWKAFLAGCRVYKNVELAKISAKKLFEIDPNGSANYVTLFNILVT 795

Query: 532 AGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNK 591
           A  W + S++R++MK+RG  K PG S       +H FV GDKS+ ++D+I++ L E+  K
Sbjct: 796 AKLWSEASKIRKLMKERGITKTPGCSWFHVGNRVHTFVAGDKSNMESDKIYNFLDELFAK 855

Query: 592 LKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCND 651
           +KAAG+ PDT  VL  I DQ+EK   L NHSE+LA+AFG++N+  +S IR+ KNLR+C D
Sbjct: 856 IKAAGYKPDTDYVLHDI-DQEEKAESLCNHSEKLAVAFGILNLNGQSTIRVFKNLRICGD 914

Query: 652 CHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           CH+  K +S +    I+VRD+ RFHHFKNG+CSCKDFW
Sbjct: 915 CHNAIKYMSNVVGVTIVVRDSLRFHHFKNGNCSCKDFW 952



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 133/540 (24%), Positives = 240/540 (44%), Gaps = 56/540 (10%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           K  +++H   V+  ++    +SS  ++ Y       +  A+++FD ++ H  +V +N L 
Sbjct: 158 KSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLC--VREAQTVFD-LMPHRDVVTWNSLS 214

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
            CYV      + L +F +++   + PD  T+ C++   + L  +K GK IHG   K G  
Sbjct: 215 SCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSGKAIHGFALKHGMV 274

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
            + FV ++LV++Y     +   + VFD M  +++++WN L   YV  G  +  + +F EM
Sbjct: 275 ENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREM 334

Query: 215 P----DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS----WNAMINGYMKAGDV 266
                  D  + + ++   S+   ++  + I        +V       A++N Y     V
Sbjct: 335 GLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCV 394

Query: 267 DSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326
             A  +FD M  R+++TWNS+ + Y   G   + L +   M++  V P+  T++S L A 
Sbjct: 395 REAQTVFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHAC 454

Query: 327 AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWT 386
           + L  L  G+ +H + V++G V D  +   L+ +Y+KC  +  A  VF  I  ++V  W 
Sbjct: 455 SDLQDLKSGKVIHGFAVRHGMVEDVFVCNALLSLYAKCVCVREAQVVFDLIPHREVASWN 514

Query: 387 AMIV----------GLGMHGMAT-------------------------QALDLFNKMCRM 411
            ++           GL M                              +A+++F KM  M
Sbjct: 515 GILTAYFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQTM 574

Query: 412 GMKPTAITFIGVLNACSHAGLVNDGRR---YFNMMINDYGIEPTIEHYGCLVDILCRTGY 468
           G KP   T   +L ACS +  +  G+    Y      D+ +  T      LVD+  + G 
Sbjct: 575 GFKPDETTIYSILRACSLSECLRMGKEIHCYVFRHWKDWDLART----NALVDMYAKCGG 630

Query: 469 LEEAKSTIESMPMRPNFVIWMSLLSGARNHGN--KDIGEYAANNLIKVAPDTIGCYVVLS 526
           L  +++  + MP++  F  W +++     HGN  + +  +    L  V PD+     VLS
Sbjct: 631 LSLSRNVFDMMPIKDVFS-WNTMIFANGMHGNGKEALSLFEKMLLSMVKPDSATFTCVLS 689



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 112/443 (25%), Positives = 197/443 (44%), Gaps = 15/443 (3%)

Query: 104 HEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSL 163
           +EA+ ++     R + PD      V K  A      + KQ H    + G   D  + ++ 
Sbjct: 22  NEAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSIGNAF 81

Query: 164 VSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP----DRDL 219
           +  Y K   ++  RRVFD +  +D+V+WN L   YV  G  +  + +F +M       + 
Sbjct: 82  IHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVKANP 141

Query: 220 FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS----WNAMINGYMKAGDVDSACELFDD 275
            + + ++ G S    ++  +EI   +    +V      +A +N Y K   V  A  +FD 
Sbjct: 142 LTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDL 201

Query: 276 MEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKG 335
           M  RD++TWNS+ + Y   G   + L +   M++  V P+  T+   LSA + L  L  G
Sbjct: 202 MPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSG 261

Query: 336 RWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMH 395
           + +H + +K+G V +  +   L+ +Y  C  +  A  VF  +  + V  W ++       
Sbjct: 262 KAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASCYVNC 321

Query: 396 GMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEH 455
           G   + L++F +M   G+KP  +    +L ACS    +  G+      +  +G+   +  
Sbjct: 322 GFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVK-HGMVEDVFV 380

Query: 456 YGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG--NKDIGEYAANNLIK 513
              LV++      + EA++  + MP R N V W SL S   N G   K +  +    L  
Sbjct: 381 CTALVNLYANCLCVREAQTVFDLMPHR-NVVTWNSLSSCYVNCGFPQKGLNVFREMVLNG 439

Query: 514 VAPDTIGCYVVLSNIYAAAGQWD 536
           V PD +    +LS ++A +   D
Sbjct: 440 VKPDLV---TMLSILHACSDLQD 459


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 220/571 (38%), Positives = 347/571 (60%), Gaps = 12/571 (2%)

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD 187
           +++  A  G +  G+ +HG   K    +     ++L+ MYAK G +D    VFD M  + 
Sbjct: 4   ILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSVRT 63

Query: 188 LVSWNCLIDGYVKKGEVEVAMKLFDEMPDR-----DLFSWTCLVDGFSKCGKVEIAREIF 242
           +V+W  LI  Y ++G  + A++LF EM DR     D+F+ T ++   +  G +E  +++ 
Sbjct: 64  VVTWTSLIAAYAREGLSDEAIRLFHEM-DREGVSPDIFTITTVLHACACNGSLENGKDVH 122

Query: 243 -YRMPN---RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFM 298
            Y   N    N+   NA+++ Y K G ++ A  +F +M ++D+I+WN+MI GY  N    
Sbjct: 123 NYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPN 182

Query: 299 EALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLI 358
           EAL L   M++ ++ P+  TL   L A A LA L++G+ +H +I++NGF  D  +   L+
Sbjct: 183 EALSLFGDMVL-EMKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVANALV 241

Query: 359 QMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI 418
            MY KCG    A  +F  I  K +  WT MI G GMHG    A+  FN+M + G++P  +
Sbjct: 242 DMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEV 301

Query: 419 TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIES 478
           +FI +L ACSH+GL+++G R+FN+M ++  ++P +EHY C+VD+L R+G L  A   I+S
Sbjct: 302 SFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIKS 361

Query: 479 MPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKV 538
           MP+ P+  IW +LLSG R H +  + E  A ++ ++ P+  G YV+L+N YA A +W++V
Sbjct: 362 MPIEPDATIWGALLSGCRIHHDVKLAEKVAEHVFELEPENTGYYVLLANTYAEAEKWEEV 421

Query: 539 SEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHV 598
            ++R+ + +RG +K+PG S IE +  +H F+ G+ SHPQ  +I   L  +R+K+K  G+ 
Sbjct: 422 KKLRQKIGRRGLKKNPGCSWIEVKSKVHIFLAGNSSHPQAKKIEVLLKRLRSKMKEEGYF 481

Query: 599 PDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKL 658
           P T   L+   D  +KE  L  HSE+LA+AFG++N+     IR+ KNLRVC DCH + K 
Sbjct: 482 PKTRYALI-NADSLQKETALCGHSEKLAMAFGILNLPPARTIRVSKNLRVCGDCHEMAKF 540

Query: 659 LSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           +S    REI++RD++RFHHFK+G C C+ FW
Sbjct: 541 ISKTLGREIVLRDSNRFHHFKDGVCCCRGFW 571



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/370 (25%), Positives = 176/370 (47%), Gaps = 18/370 (4%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           + +H   VK  + + +   + LL +Y    +  L  A  +FD ++   ++V +  LI  Y
Sbjct: 18  RAVHGSGVKACVHWKTTFCNTLLDMYAKCGV--LDGAILVFD-LMSVRTVVTWTSLIAAY 74

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
                S EA+ LF ++    + PD FT+  V+   A  G+++ GK +H  + +     + 
Sbjct: 75  AREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKDVHNYIRENDMQSNI 134

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM--- 214
           FV ++L+ MYAK G ++    VF  M  KD++SWN +I GY K      A+ LF +M   
Sbjct: 135 FVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMVLE 194

Query: 215 --PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS----WNAMINGYMKAGDVDS 268
             PD    +  C++   +    ++  +E+   +      S     NA+++ Y+K G    
Sbjct: 195 MKPDGTTLA--CILPACASLASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVL 252

Query: 269 ACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAG 328
           A  LFD +  +DLITW  MIAGY ++G    A+     M    + P++ + +S L A + 
Sbjct: 253 ARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSH 312

Query: 329 LAVLNKGRWMHSYIVKNGFVVDGVLG--TLLIQMYSKCGSIESALTVFRAIS-KKKVGHW 385
             +L++G W    ++++   V   L     ++ + ++ G +  A    +++  +     W
Sbjct: 313 SGLLDEG-WRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIKSMPIEPDATIW 371

Query: 386 TAMIVGLGMH 395
            A++ G  +H
Sbjct: 372 GALLSGCRIH 381


>gi|302800064|ref|XP_002981790.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
 gi|300150622|gb|EFJ17272.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
          Length = 611

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 237/601 (39%), Positives = 365/601 (60%), Gaps = 17/601 (2%)

Query: 105 EALTLFCDLLDRFLLPDNFTLPCVIKGAARLGA--IKEGKQIHGLVFKLGFGFDKFVLSS 162
           EAL  F  +      PD  T   ++   A++GA  I +G++IH      G   +  V ++
Sbjct: 12  EALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARISGLLPNVVVGTA 71

Query: 163 LVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR----- 217
           ++SMY K G +D  R  F+ +  K+ V+WN ++  Y   G    A++LF EM +R     
Sbjct: 72  VISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELFREMCERSRSAR 131

Query: 218 -DLFSWTCLVDGFSKCGKVEIAREIFYRMP------NRNLVSWNAMINGYMKAGDVDSAC 270
            D FS++  ++  S    +E  REI   +       ++++V   A++N Y K GD++ A 
Sbjct: 132 PDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLNMYSKCGDLEEAR 191

Query: 271 ELFDDME-IRDLITWNSMIAGYELNGRFMEALELLETML-IGDVLPNDATLVSALSAVAG 328
           ++FD +    D + WN+MIA Y  +GR  +AL+L  +M    D+ P   T V+ +   A 
Sbjct: 192 KVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAE 251

Query: 329 LAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAM 388
           L+ L +GR +H+ +    F  + ++   L+ MY KCG ++ AL VF ++  K    W  +
Sbjct: 252 LSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKLKDEISWNTI 311

Query: 389 IVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYG 448
           I     HG + QAL L+ +M   G+KPT +TF+G+L+ACSH GLV DG  YF  M +D+ 
Sbjct: 312 ISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGLDYFYRMQDDHR 371

Query: 449 IEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAA 508
           I+P++ H+GC++D+L R G L EA+  ++SMP++ N V WMSLL   + HG+   G  AA
Sbjct: 372 IKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGACKTHGDLKRGVRAA 431

Query: 509 NNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEF 568
           + ++   P T G YV+LSNIYAAAG+W  V ++R++M  RG +K PG S IE   V+HEF
Sbjct: 432 DQVVDRVPWTSGGYVLLSNIYAAAGRWKDVEKIRKIMAARGVKKSPGKSWIEIGDVVHEF 491

Query: 569 VVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIA 628
           V GD+SHPQ +EI+ +L +M  ++K  G+VPDT+ V   +E++++++  +  HSE+LAI 
Sbjct: 492 VSGDRSHPQGEEIYVELGKMVEEMKGLGYVPDTSSVFHDLEEEEKEDLLV-CHSEKLAIV 550

Query: 629 FGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDF 688
           +G + V  +S +RIVKNLRVC DCH+ TK +S I  R+I+VRD +RFH F+NGSCSC+D+
Sbjct: 551 YGNMVVPGKSMLRIVKNLRVCLDCHTATKFMSRITGRKIVVRDAARFHLFENGSCSCRDY 610

Query: 689 W 689
           W
Sbjct: 611 W 611



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 137/309 (44%), Gaps = 19/309 (6%)

Query: 55  ISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL 114
           + + LL++Y      +L  AR +FD I      V +N +I  Y  + R  +AL L+  + 
Sbjct: 173 VGTALLNMY--SKCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSMH 230

Query: 115 DRF-LLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEI 173
           D   L P   T   VI   A L A+K+G+ IH  V    F  +  V ++LV MY K G +
Sbjct: 231 DTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCL 290

Query: 174 DLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGF 229
           D    VF +M  KD +SWN +I  Y   G  + A+ L+ EM  + +     ++  L+   
Sbjct: 291 DEALDVFHSMKLKDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSAC 350

Query: 230 SKCGKVEIAREIFYRMPNRNLVS-----WNAMINGYMKAGDVDSACELFDDMEIR-DLIT 283
           S  G V    + FYRM + + +      +  +I+   + G +  A  +   M I+ + + 
Sbjct: 351 SHGGLVADGLDYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQ 410

Query: 284 WNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIV 343
           W S++   + +G     +   + ++  D +P  +     LS +   A    GRW     +
Sbjct: 411 WMSLLGACKTHGDLKRGVRAADQVV--DRVPWTSGGYVLLSNIYAAA----GRWKDVEKI 464

Query: 344 KNGFVVDGV 352
           +      GV
Sbjct: 465 RKIMAARGV 473


>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g18840-like [Vitis vinifera]
          Length = 536

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 217/545 (39%), Positives = 327/545 (60%), Gaps = 33/545 (6%)

Query: 29  KFSSTHKETQQLHALSVKTNLIYHSGISSRLL-SLYVDPHINNLHYARSIFDRILQHPSL 87
           + +++  E  Q HA  +K+ LI+ +  +SRL+ S+  + H   + YA SIF RI  +P+ 
Sbjct: 15  EMATSISELHQAHAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFSRI-PNPNS 73

Query: 88  VLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGL 147
            ++N +I+ Y  +     ALT+F  +L   +LPD +T    +K       ++EG+QIHG 
Sbjct: 74  YMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGH 133

Query: 148 VFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVA 207
           V K G G D F+ ++L+ +YA  G                     C+ D          A
Sbjct: 134 VLKTGLGDDLFIQNTLIHLYASCG---------------------CIED----------A 162

Query: 208 MKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVD 267
             L D M +RD+ SW  L+  +++ G +E+A  +F  M  RN+ SWN MI+GY+  G ++
Sbjct: 163 RHLLDRMLERDVVSWNALLSAYAERGLMELACHLFDEMTERNVESWNFMISGYVGVGLLE 222

Query: 268 SACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVA 327
            A  +F +  ++++++WN+MI GY   GRF E L L E M    V P++ TLVS LSA A
Sbjct: 223 EARRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACA 282

Query: 328 GLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTA 387
            +  L++G W+H+YI KNG  +DG + T L+ MYSKCGSIE AL VF +  +K +  W +
Sbjct: 283 HVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNS 342

Query: 388 MIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDY 447
           +I GL  HG    AL +F++M   G KP  +TF+ VL+ACS AGL+++GR  FN+M++ +
Sbjct: 343 IISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVH 402

Query: 448 GIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYA 507
           GI+PTIEHYGC+VD+L R G LEEA+  ++ MP +   V+W SLL   RNHGN ++ E  
Sbjct: 403 GIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWESLLGACRNHGNVELAERV 462

Query: 508 ANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHE 567
           A  L++++P     +V LSN+YA+ G+W  V EVR+ M+ +G RKDPG S IE  G ++E
Sbjct: 463 AQKLLELSPQESSSFVQLSNMYASMGRWKDVMEVRQKMRAQGVRKDPGCSMIEVDGTVYE 522

Query: 568 FVVGD 572
           F+ G+
Sbjct: 523 FLAGE 527


>gi|225442928|ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Vitis vinifera]
          Length = 703

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 237/680 (34%), Positives = 399/680 (58%), Gaps = 22/680 (3%)

Query: 26  NILKFSSTHKETQ---QLHALSVKTNLIYHSGIS--SRLLSLYVDPHINNLHYARSIFDR 80
            +LK S+  K  +    +HA  + TN      I   + L++LY     + +  AR +FD 
Sbjct: 30  QLLKVSADTKNLKFGKMIHAHLIITNQATKDNIVQVNSLINLYAK--CDQIMVARILFDG 87

Query: 81  ILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLD-RFLLPDNFTLPCVIKGAARLGAIK 139
            ++  ++V +  L+  Y  N    E L LF  ++   ++ P+ +    +I   +  G + 
Sbjct: 88  -MRKRNVVSWGALMAGYFHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSDSGQVV 146

Query: 140 EGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYV 199
           EG Q HG   K G  F ++V ++L+ MY++  ++     V+  +   D+ S+N +I+G +
Sbjct: 147 EGWQCHGYALKSGLVFHQYVKNALICMYSRRSDVKGAMSVWYEVPGLDVFSYNIIINGLL 206

Query: 200 KKGEVEVAMKLFDEMPDRDLFSW--TCLVDGFSKCGKVEIAR---EIFYRM-----PNRN 249
           + G    A+++ D M D +   W     V  F  C  ++  R   ++  RM        +
Sbjct: 207 ENGYPSEALEVLDRMVD-ECIVWDNVTYVTAFGLCSHLKDLRLGLQVHCRMFRTGAEYDS 265

Query: 250 LVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLI 309
            VS +A+I+ Y K G++ +A ++F+ ++ +++++W +++A Y  NG F EAL     M +
Sbjct: 266 FVS-SAIIDMYGKCGNILNARKVFNRLQTKNVVSWTAILAAYSQNGCFEEALNFFPEMEV 324

Query: 310 GDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIES 369
             +LPN+ T    L++ AG++ L  G+ +H+ I K+GF    ++G  LI MYSK GSIE+
Sbjct: 325 DGLLPNEYTFAVLLNSCAGISALGHGKLLHTRIKKSGFEDHIIVGNALINMYSKSGSIEA 384

Query: 370 ALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSH 429
           A  VF  +  +    W+AMI GL  HG+  +AL +F +M      P  +TF+GVL+AC+H
Sbjct: 385 AHKVFLEMICRDSITWSAMICGLSHHGLGREALVVFQEMLAAKECPHYVTFVGVLSACAH 444

Query: 430 AGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWM 489
            G V +G  Y N ++   GIEP +EHY C+V +LC+ G L+EA++ ++S P++ + V W 
Sbjct: 445 LGSVQEGFYYLNQLMKQTGIEPGVEHYTCIVGLLCKAGRLDEAENFMKSTPVKWDVVAWR 504

Query: 490 SLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRG 549
           +LLS    H N  +G+  A  ++++ P  +G Y++LSN+YA A +WD V ++R++M++R 
Sbjct: 505 TLLSACHVHQNYGLGKKVAELVLQMDPGDVGTYILLSNMYAKAKRWDGVVKIRKLMRERN 564

Query: 550 FRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIE 609
            +K+PG+S IE R  +H FV   K+HP++++I+ K+ E+   ++  G+VPD   V   +E
Sbjct: 565 VKKEPGASWIEIRNSIHVFVSEGKTHPESNQIYEKVQELLTMIRPMGYVPDIAAVFHDVE 624

Query: 610 DQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIV 669
           D++++E  +  HSE+LAIA+GL+   S +PIR++KNLR+C DCHS  KL+S + NR IIV
Sbjct: 625 DEQKREY-VSYHSEKLAIAYGLMKTPSGAPIRVIKNLRMCVDCHSAVKLISKVTNRMIIV 683

Query: 670 RDNSRFHHFKNGSCSCKDFW 689
           RD +RFH F +G CSC D+W
Sbjct: 684 RDANRFHCFGDGGCSCADYW 703


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 255/696 (36%), Positives = 376/696 (54%), Gaps = 49/696 (7%)

Query: 37  TQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKC 96
           T+ +   S+ TN+  H G+  RL+ + ++  + + + AR +FD I Q P     + LI  
Sbjct: 84  TEAMVPPSLPTNIPSHLGL--RLIRVALN--VGDFNRARQLFDNIPQ-PDPTTCSTLISA 138

Query: 97  YVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFD 156
              +  S+EA+ ++  L +R + PD        K  A  G     K++H    + G   D
Sbjct: 139 LTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSD 198

Query: 157 KFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM-- 214
            FV ++L+  Y K   ++  RRVFD +  +D+VSW  L   YVK G     M +F EM  
Sbjct: 199 VFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGW 258

Query: 215 ----PDR---------------------------------DLFSWTCLVDGFSKCGKVEI 237
               P+                                  +LF  + LV  ++KC  V  
Sbjct: 259 SGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVRE 318

Query: 238 AREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDME---IR-DLITWNSMIAGYEL 293
           AR +F  MP+R++VSWN ++  Y K  + +    LF  M    +R D  TWN++I G   
Sbjct: 319 ARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCME 378

Query: 294 NGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVL 353
           NGR  EA+E+   M      PN+ T+ S L A +    L  G+ +H Y+ ++  V D   
Sbjct: 379 NGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTS 438

Query: 354 GTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGM 413
            T L+ MY+KCG +  +  VF  + +K V  W  MI+   MHG   +AL LF+KM    +
Sbjct: 439 TTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRV 498

Query: 414 KPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAK 473
           +P ++TF GVL+ CSH+ LV +G + FN M  D+ +EP   HY C+VDI  R G L EA 
Sbjct: 499 QPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAY 558

Query: 474 STIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAG 533
             I+ MPM P    W +LL+  R + N ++ + +A  L ++ P+  G YV L NI   A 
Sbjct: 559 KFIQGMPMEPTASAWGALLAACRVYKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAK 618

Query: 534 QWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLK 593
            W + S+VR +MK+RG  K PG S ++    +H FVVGDKS+ ++D+I++ L E+  K+K
Sbjct: 619 MWSEASQVRILMKERGITKTPGCSWLQVGNKVHTFVVGDKSNIESDKIYNFLDELVEKMK 678

Query: 594 AAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCH 653
            AG+ PDT  VL  I DQ+EK   L NHSE+LA+AFG++N+  +S IR+ KNLR+C DCH
Sbjct: 679 MAGYKPDTDYVLQDI-DQEEKAESLCNHSEKLAVAFGILNLNGQSTIRVFKNLRICGDCH 737

Query: 654 SVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           +  K +S +    I+VRD+ RFHHFKNG+CSCKD W
Sbjct: 738 NAIKYMSKVVGVIIVVRDSLRFHHFKNGNCSCKDLW 773



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 137/301 (45%), Gaps = 48/301 (15%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           K  +++H  +V+  ++ +  + S L+SLY      ++  AR +FD ++ H  +V +N ++
Sbjct: 282 KSGKEIHGFAVRHGMVVNLFVCSALVSLYA--KCLSVREARMVFD-LMPHRDVVSWNGVL 338

Query: 95  KCYVFNQ-----------------------------------RSHEALTLFCDLLDRFLL 119
             Y  N+                                   RS EA+ +F  +      
Sbjct: 339 TAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFK 398

Query: 120 PDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRV 179
           P+  T+  ++   +    ++ GK+IH  VF+     D    ++L+ MYAK G+++L R V
Sbjct: 399 PNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNV 458

Query: 180 FDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM----PDRDLFSWTCLVDGFSKCGKV 235
           FD M  KD+V+WN +I      G  + A+ LFD+M       +  ++T ++ G S    V
Sbjct: 459 FDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLV 518

Query: 236 EIAREIFYRMPNRNLVS-----WNAMINGYMKAGDVDSACELFDDMEIRDLIT-WNSMIA 289
           E   +IF  M   +LV      ++ +++ Y +AG ++ A +    M +    + W +++A
Sbjct: 519 EEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLA 578

Query: 290 G 290
            
Sbjct: 579 A 579


>gi|225446691|ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
           [Vitis vinifera]
          Length = 657

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 222/588 (37%), Positives = 347/588 (59%), Gaps = 40/588 (6%)

Query: 141 GKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVK 200
           GKQ+H L+   G   DKF+ + L+++Y+K G++D    +F  M  K+++S N LI+GY +
Sbjct: 71  GKQLHSLIITSGCSSDKFISNHLLNLYSKCGQLDTAITLFGVMPRKNIMSCNILINGYFR 130

Query: 201 KGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM------PNR------ 248
            G+   A K+FDEMP+R++ +W  +V G  +    E    +F RM      P+       
Sbjct: 131 SGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEGLGLFSRMNELGFLPDEFALGSV 190

Query: 249 ---------------------------NLVSWNAMINGYMKAGDVDSACELFDDMEIRDL 281
                                      NLV  +++ + YMK G +     L   M  +++
Sbjct: 191 LRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAHMYMKCGSLGEGERLIRAMPSQNV 250

Query: 282 ITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSY 341
           + WN++IAG   NG   E L+    M +    P+  T VS +S+ + LA L +G+ +H+ 
Sbjct: 251 VAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKITFVSVISSCSELATLGQGQQIHAE 310

Query: 342 IVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQA 401
           ++K G  +   + + LI MYS+CG +E +L VF       V  W++MI   G HG   +A
Sbjct: 311 VIKAGASLIVSVISSLISMYSRCGCLEYSLKVFLECENGDVVCWSSMIAAYGFHGRGVEA 370

Query: 402 LDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVD 461
           +DLFN+M +  ++   +TF+ +L ACSH GL   G ++F++M+  YG++P +EHY C+VD
Sbjct: 371 IDLFNQMEQEKLEANDVTFLSLLYACSHCGLKEKGIKFFDLMVEKYGVKPRLEHYTCMVD 430

Query: 462 ILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGC 521
           +L R G +EEA++ I SMP++ + + W +LLS  + H   ++    +  + ++ P     
Sbjct: 431 LLGRYGSVEEAEALIRSMPVKADVITWKTLLSACKIHKKTEMARRISEEVFRLDPRDPVP 490

Query: 522 YVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEI 581
           YV+LSNI+A+  +WD VS+VR+ M+ R  +K+PG S +E +  +H+F +GDKSHP++ EI
Sbjct: 491 YVLLSNIHASDKRWDDVSDVRKAMRDRKLKKEPGISWLEVKNQIHQFCMGDKSHPKSVEI 550

Query: 582 HSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIR 641
            S L E+ +++K  G+VPD   VL  + D ++KE  L +HSE+LAIAF L+     +PIR
Sbjct: 551 ASYLRELTSEMKKRGYVPDIDSVLHDM-DVEDKEYSLVHHSEKLAIAFALLYTPVGTPIR 609

Query: 642 IVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           ++KNLRVC+DCH   K +S I NREIIVRD+SRFHHFKNG CSC D+W
Sbjct: 610 VIKNLRVCSDCHVAIKYISEISNREIIVRDSSRFHHFKNGRCSCGDYW 657



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 97/353 (27%), Positives = 174/353 (49%), Gaps = 21/353 (5%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           AR +FD + +  ++  +N ++   +  + + E L LF  + +   LPD F L  V++G A
Sbjct: 137 ARKMFDEMPER-NVATWNAMVAGLIQFEFNEEGLGLFSRMNELGFLPDEFALGSVLRGCA 195

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
            L A+  G+Q+HG V K GF F+  V+SSL  MY K G +  G R+  AM  +++V+WN 
Sbjct: 196 GLRALVAGRQVHGYVRKCGFEFNLVVVSSLAHMYMKCGSLGEGERLIRAMPSQNVVAWNT 255

Query: 194 LIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKCGKV-------EIARE 240
           LI G  + G  E  +  ++ M      PD+  F     V   S C ++       +I  E
Sbjct: 256 LIAGRAQNGYPEEVLDQYNMMKMAGFRPDKITF-----VSVISSCSELATLGQGQQIHAE 310

Query: 241 IFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEA 300
           +     +  +   +++I+ Y + G ++ + ++F + E  D++ W+SMIA Y  +GR +EA
Sbjct: 311 VIKAGASLIVSVISSLISMYSRCGCLEYSLKVFLECENGDVVCWSSMIAAYGFHGRGVEA 370

Query: 301 LELLETMLIGDVLPNDATLVSALSAVAGLAVLNKG-RWMHSYIVKNGFVVDGVLGTLLIQ 359
           ++L   M    +  ND T +S L A +   +  KG ++    + K G        T ++ 
Sbjct: 371 IDLFNQMEQEKLEANDVTFLSLLYACSHCGLKEKGIKFFDLMVEKYGVKPRLEHYTCMVD 430

Query: 360 MYSKCGSIESALTVFRAIS-KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRM 411
           +  + GS+E A  + R++  K  V  W  ++    +H     A  +  ++ R+
Sbjct: 431 LLGRYGSVEEAEALIRSMPVKADVITWKTLLSACKIHKKTEMARRISEEVFRL 483



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 100/242 (41%), Gaps = 37/242 (15%)

Query: 332 LNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKK----------- 380
           L+ G+ +HS I+ +G   D  +   L+ +YSKCG +++A+T+F  + +K           
Sbjct: 68  LSLGKQLHSLIITSGCSSDKFISNHLLNLYSKCGQLDTAITLFGVMPRKNIMSCNILING 127

Query: 381 --------------------KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITF 420
                                V  W AM+ GL       + L LF++M  +G  P     
Sbjct: 128 YFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEGLGLFSRMNELGFLPDEFAL 187

Query: 421 IGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP 480
             VL  C+    +  GR+     +   G E  +     L  +  + G L E +  I +MP
Sbjct: 188 GSVLRGCAGLRALVAGRQVHG-YVRKCGFEFNLVVVSSLAHMYMKCGSLGEGERLIRAMP 246

Query: 481 MRPNFVIWMSLLSGARNHGNKD--IGEYAANNLIKVAPDTIGCYVVLSNI--YAAAGQWD 536
            + N V W +L++G   +G  +  + +Y    +    PD I    V+S+    A  GQ  
Sbjct: 247 SQ-NVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKITFVSVISSCSELATLGQGQ 305

Query: 537 KV 538
           ++
Sbjct: 306 QI 307



 Score = 46.6 bits (109), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 103/262 (39%), Gaps = 42/262 (16%)

Query: 32  STHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYN 91
           +T  + QQ+HA  +K        + S L+S+Y       L Y+  +F    ++  +V ++
Sbjct: 299 ATLGQGQQIHAEVIKAGASLIVSVISSLISMY--SRCGCLEYSLKVFLEC-ENGDVVCWS 355

Query: 92  LLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKL 151
            +I  Y F+ R  EA+ LF  +    L  ++ T   ++   +  G  ++G +   L    
Sbjct: 356 SMIAAYGFHGRGVEAIDLFNQMEQEKLEANDVTFLSLLYACSHCGLKEKGIKFFDL---- 411

Query: 152 GFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLF 211
                         M  K+G                L  + C++D   + G VE A  L 
Sbjct: 412 --------------MVEKYGV------------KPRLEHYTCMVDLLGRYGSVEEAEALI 445

Query: 212 DEMPDR-DLFSWTCLVDGFSKCGKVEIAREI---FYRMPNRNLVSWNAMINGYMKAGDVD 267
             MP + D+ +W  L+       K E+AR I    +R+  R+ V +  + N +      D
Sbjct: 446 RSMPVKADVITWKTLLSACKIHKKTEMARRISEEVFRLDPRDPVPYVLLSNIHASDKRWD 505

Query: 268 SACELFDDMEIRDL-----ITW 284
              ++   M  R L     I+W
Sbjct: 506 DVSDVRKAMRDRKLKKEPGISW 527


>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2261; Flags: Precursor
 gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 237/656 (36%), Positives = 375/656 (57%), Gaps = 30/656 (4%)

Query: 55  ISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL 114
           +   L+ ++V    N+   A  +FD+ +   ++V + L+I   +      EA+  F D++
Sbjct: 204 VGCSLIDMFVKGE-NSFENAYKVFDK-MSELNVVTWTLMITRCMQMGFPREAIRFFLDMV 261

Query: 115 DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKF---G 171
                 D FTL  V    A L  +  GKQ+H    + G   D  V  SLV MYAK    G
Sbjct: 262 LSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDD--VECSLVDMYAKCSADG 319

Query: 172 EIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEV-AMKLFDEM-------PDRDLFSWT 223
            +D  R+VFD M+D  ++SW  LI GY+K   +   A+ LF EM       P+   FS  
Sbjct: 320 SVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFS-- 377

Query: 224 CLVDGFSKCGKV---EIAREIFYRMPNRNLVS----WNAMINGYMKAGDVDSACELFDDM 276
                F  CG +    + +++  +   R L S     N++I+ ++K+  ++ A   F+ +
Sbjct: 378 ---SAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESL 434

Query: 277 EIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGR 336
             ++L+++N+ + G   N  F +A +LL  +   ++  +  T  S LS VA +  + KG 
Sbjct: 435 SEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGE 494

Query: 337 WMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHG 396
            +HS +VK G   +  +   LI MYSKCGSI++A  VF  +  + V  WT+MI G   HG
Sbjct: 495 QIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHG 554

Query: 397 MATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHY 456
            A + L+ FN+M   G+KP  +T++ +L+ACSH GLV++G R+FN M  D+ I+P +EHY
Sbjct: 555 FAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHY 614

Query: 457 GCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAP 516
            C+VD+LCR G L +A   I +MP + + ++W + L   R H N ++G+ AA  ++++ P
Sbjct: 615 ACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDP 674

Query: 517 DTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHP 576
           +    Y+ LSNIYA AG+W++ +E+R  MK+R   K+ G S IE    +H+F VGD +HP
Sbjct: 675 NEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHP 734

Query: 577 QTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAE---LENHSERLAIAFGLIN 633
              +I+ +L  +  ++K  G+VPDT  VL  +E++ ++  +   L  HSE++A+AFGLI+
Sbjct: 735 NAHQIYDELDRLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEKIAVAFGLIS 794

Query: 634 VKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
                P+R+ KNLRVC DCH+  K +S +  REI++RD +RFHHFK+G CSC D+W
Sbjct: 795 TSKSRPVRVFKNLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFKDGKCSCNDYW 850



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 121/486 (24%), Positives = 214/486 (44%), Gaps = 66/486 (13%)

Query: 121 DNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVF 180
           D+ T   ++K   R    + GK +H  + +     D  + +SL+S+Y+K G+      VF
Sbjct: 61  DSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVF 120

Query: 181 DAM---DDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCG 233
           + M     +D+VSW+ ++  Y   G    A+K+F E  +  L    + +T ++   S   
Sbjct: 121 ETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSD 180

Query: 234 KVEIAR-EIFYRMPNRNLVS----WNAMINGYMKA-GDVDSACELFDDMEIRDLITWNSM 287
            V + R  + + M   +  S      ++I+ ++K     ++A ++FD M   +++TW  M
Sbjct: 181 FVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLM 240

Query: 288 IAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGF 347
           I      G   EA+     M++     +  TL S  SA A L  L+ G+ +HS+ +++G 
Sbjct: 241 ITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGL 300

Query: 348 VVDGVLGTLLIQMYSKC---GSIESALTVFRAISKKKVGHWTAMIVG-LGMHGMATQALD 403
           V D  +   L+ MY+KC   GS++    VF  +    V  WTA+I G +    +AT+A++
Sbjct: 301 VDD--VECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAIN 358

Query: 404 LFNKMCRMG-MKPTAITFIGVLNAC----------------------SHAGLVN------ 434
           LF++M   G ++P   TF     AC                      S++ + N      
Sbjct: 359 LFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMF 418

Query: 435 -------DGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRP---N 484
                  D +R F  +      E  +  Y   +D  CR    E+A   +  +  R    +
Sbjct: 419 VKSDRMEDAQRAFESL-----SEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVS 473

Query: 485 FVIWMSLLSGARNHGNKDIGEYAANNLIK--VAPDTIGCYVVLSNIYAAAGQWDKVSEVR 542
              + SLLSG  N G+   GE   + ++K  ++ +   C  ++S +Y+  G  D  S V 
Sbjct: 474 AFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALIS-MYSKCGSIDTASRVF 532

Query: 543 EMMKKR 548
             M+ R
Sbjct: 533 NFMENR 538



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 120/535 (22%), Positives = 224/535 (41%), Gaps = 83/535 (15%)

Query: 40  LHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFD--RILQHPSLVLYNLLIKCY 97
           +HA  ++ ++   S + + L+SLY      +   A  +F+  R      +V ++ ++ CY
Sbjct: 84  VHARLIEFDIEPDSVLYNSLISLYSKS--GDSAKAEDVFETMRRFGKRDVVSWSAMMACY 141

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLG-FGFD 156
             N R  +A+ +F + L+  L+P+++    VI+  +    +  G+   G + K G F  D
Sbjct: 142 GNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESD 201

Query: 157 KFVLSSLVSMYAKFGE--IDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
             V  SL+ M+ K GE   +   +VFD M + ++V+W  +I   ++ G    A++ F +M
Sbjct: 202 VCVGCSLIDMFVK-GENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDM 260

Query: 215 P--------------------------DRDLFSWT-----------CLVDGFSKC---GK 234
                                       + L SW             LVD ++KC   G 
Sbjct: 261 VLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDDVECSLVDMYAKCSADGS 320

Query: 235 VEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELN 294
           V+  R++F RM + +++SW A+I GYMK  ++ +                          
Sbjct: 321 VDDCRKVFDRMEDHSVMSWTALITGYMKNCNLAT-------------------------- 354

Query: 295 GRFMEALELLETMLI-GDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVL 353
               EA+ L   M+  G V PN  T  SA  A   L+    G+ +     K G   +  +
Sbjct: 355 ----EAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSV 410

Query: 354 GTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGM 413
              +I M+ K   +E A   F ++S+K +  +   + G   +    QA  L +++    +
Sbjct: 411 ANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITEREL 470

Query: 414 KPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAK 473
             +A TF  +L+  ++ G +  G +  + ++   G+         L+ +  + G ++ A 
Sbjct: 471 GVSAFTFASLLSGVANVGSIRKGEQIHSQVVK-LGLSCNQPVCNALISMYSKCGSIDTAS 529

Query: 474 STIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIK--VAPDTIGCYVVLS 526
                M  R N + W S+++G   HG         N +I+  V P+ +    +LS
Sbjct: 530 RVFNFMENR-NVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILS 583


>gi|225452922|ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
           [Vitis vinifera]
          Length = 594

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/556 (40%), Positives = 334/556 (60%), Gaps = 5/556 (0%)

Query: 32  STHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYN 91
           S+  + +Q+HA  +K NL   S +  +L++ +       +  A ++F++I Q P ++LYN
Sbjct: 28  SSLNQVKQIHAQVLKANLHRESFVGQKLIAAF--SLCRQMTLAVNVFNQI-QDPDVLLYN 84

Query: 92  LLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKL 151
            LI+ +V N     A ++F ++ D  +  DNFT P ++K  +    ++  + IH  V K+
Sbjct: 85  TLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVWVRVVEMIHAQVEKM 144

Query: 152 GFGFDKFVLSSLVSMYAKFG--EIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMK 209
           GF  D FV +SL+  Y K G   +   R+VF+ M ++D VSWN +I G VK GE+  A +
Sbjct: 145 GFCLDIFVPNSLIDSYFKCGLDGVAAARKVFEVMAERDTVSWNSMIGGLVKVGELGEARR 204

Query: 210 LFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSA 269
           LFDEMP+RD  SW  ++DG+ K G++  A E+F +MP RN+VSW+ M+ GY KAGD+D A
Sbjct: 205 LFDEMPERDTVSWNTILDGYVKAGEMNAAFELFEKMPARNVVSWSTMVLGYSKAGDMDMA 264

Query: 270 CELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGL 329
             LFD M +++L+ W  MI+GY   G   +A+ L   M    +  +D T++S LSA A  
Sbjct: 265 RILFDKMPVKNLVPWTIMISGYAEKGLAKDAINLYNQMEEAGLKFDDGTVISILSACAVS 324

Query: 330 AVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMI 389
            +L  G+ +H+ I +  F     +   LI MY+KCGS+E+AL++F  + +K V  W A+I
Sbjct: 325 GLLGLGKRVHASIERTRFKCSTPVSNALIDMYAKCGSLENALSIFHGMVRKDVVSWNAII 384

Query: 390 VGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGI 449
            GL MHG   +AL LF++M   G  P  +TF+GVL AC+HAG V++G  YF+ M  DYG+
Sbjct: 385 QGLAMHGHGEKALQLFSRMKGEGFVPDKVTFVGVLCACTHAGFVDEGLHYFHAMERDYGV 444

Query: 450 EPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAAN 509
            P +EHYGC+VD+L R G L+EA   + SMP+ PN +IW +LL   R H    + E   +
Sbjct: 445 PPEVEHYGCMVDLLGRGGRLKEAFRLVHSMPLEPNAIIWGTLLGACRMHSATGLAEEVFD 504

Query: 510 NLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFV 569
            L+K      G   +LSNIYAAAG WD  + +R  MK    +K  G SSIE    +HEF 
Sbjct: 505 RLVKSELSDSGNLSMLSNIYAAAGDWDNFANIRLRMKSTSIQKPSGGSSIEVDDEVHEFT 564

Query: 570 VGDKSHPQTDEIHSKL 585
           V D+SHP++D I+  +
Sbjct: 565 VFDRSHPKSDRIYKTI 580



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 110/410 (26%), Positives = 180/410 (43%), Gaps = 82/410 (20%)

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
           R  ++ + KQIH  V K     + FV   L++ ++   ++ L   VF+ + D D++ +N 
Sbjct: 26  RCSSLNQVKQIHAQVLKANLHRESFVGQKLIAAFSLCRQMTLAVNVFNQIQDPDVLLYNT 85

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDR------------------------------------ 217
           LI  +V+  E  +A  +F EM D                                     
Sbjct: 86  LIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVWVRVVEMIHAQVEKMG 145

Query: 218 ---DLFSWTCLVDGFSKCG--KVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACEL 272
              D+F    L+D + KCG   V  AR++F  M  R+ VSWN+MI G +K G++  A  L
Sbjct: 146 FCLDIFVPNSLIDSYFKCGLDGVAAARKVFEVMAERDTVSWNSMIGGLVKVGELGEARRL 205

Query: 273 FDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVL 332
           FD+M  RD ++WN+++ GY   G    A EL E M   +V+                   
Sbjct: 206 FDEMPERDTVSWNTILDGYVKAGEMNAAFELFEKMPARNVVS------------------ 247

Query: 333 NKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGL 392
               W                 + ++  YSK G ++ A  +F  +  K +  WT MI G 
Sbjct: 248 ----W-----------------STMVLGYSKAGDMDMARILFDKMPVKNLVPWTIMISGY 286

Query: 393 GMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT 452
              G+A  A++L+N+M   G+K    T I +L+AC+ +GL+  G+R  +  I     + +
Sbjct: 287 AEKGLAKDAINLYNQMEEAGLKFDDGTVISILSACAVSGLLGLGKR-VHASIERTRFKCS 345

Query: 453 IEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKD 502
                 L+D+  + G LE A S    M +R + V W +++ G   HG+ +
Sbjct: 346 TPVSNALIDMYAKCGSLENALSIFHGM-VRKDVVSWNAIIQGLAMHGHGE 394


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 229/617 (37%), Positives = 359/617 (58%), Gaps = 10/617 (1%)

Query: 82  LQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEG 141
           + H  +V +N +I          +A+ L   + +  + P++ T+  V+       A+  G
Sbjct: 170 MSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHG 229

Query: 142 KQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKK 201
           K +HG   +  F     V + L+ MYAK   +   R++FD M  ++ VSW+ +I GYV  
Sbjct: 230 KALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVAS 289

Query: 202 GEVEVAMKLFDEMPDRDLFSWTCLVDG--FSKCGKV-EIARE------IFYRMPNRNLVS 252
             ++ A++LFD+M  +D    T +  G     C K+ +++R       I       +++ 
Sbjct: 290 DCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILL 349

Query: 253 WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDV 312
            N +++ Y K G +D A   FD+M  +D ++++++++G   NG    AL +   M +  +
Sbjct: 350 GNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGI 409

Query: 313 LPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALT 372
            P+  T++  L A + LA L  G   H Y++  GF  D ++   LI MYSKCG I  A  
Sbjct: 410 DPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFARE 469

Query: 373 VFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGL 432
           VF  + +  +  W AMI+G G+HG+  +AL LF+ +  +G+KP  ITFI +L++CSH+GL
Sbjct: 470 VFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGL 529

Query: 433 VNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLL 492
           V +GR +F+ M  D+ I P +EH  C+VDIL R G ++EA   I +MP  P+  IW +LL
Sbjct: 530 VMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALL 589

Query: 493 SGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRK 552
           S  R H N ++GE  +  +  + P++ G +V+LSNIY+AAG+WD  + +R   K  G +K
Sbjct: 590 SACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKK 649

Query: 553 DPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQK 612
            PG S IE  G++H FV GD+SH Q  +I+ KL E+  ++K  G+  + + V   +E++ 
Sbjct: 650 IPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQAECSFVFQDVEEE- 708

Query: 613 EKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDN 672
           EKE  L  HSE+LAIAFG++N+K+  PI + KNLRVC DCH+  K ++ I  REI VRD 
Sbjct: 709 EKEQILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCGDCHTAIKFMTLITKREITVRDA 768

Query: 673 SRFHHFKNGSCSCKDFW 689
           +RFHHFKNG+C+C DFW
Sbjct: 769 NRFHHFKNGTCNCGDFW 785



 Score =  198 bits (503), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 153/539 (28%), Positives = 251/539 (46%), Gaps = 78/539 (14%)

Query: 31  SSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLY 90
           S +  E +++H   +K      S +  +L  LY+    N +  AR +FD I  +PS++L+
Sbjct: 21  SKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLS--CNQVVLARRLFDEI-PNPSVILW 77

Query: 91  NLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFK 150
           N +I+ Y +N     A+ L+  +L   + P+ +T P V+K  + L AI++G +IH     
Sbjct: 78  NQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKM 137

Query: 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
            G   D FV ++LV  YAK G +   +R+F +M  +D+V+WN +I G    G  + A++L
Sbjct: 138 FGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQL 197

Query: 211 FDEMP---------------------------------------DRDLFSWTCLVDGFSK 231
             +M                                        D  +   T L+D ++K
Sbjct: 198 IMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAK 257

Query: 232 CGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGY 291
           C  +  AR+IF  M  RN VSW+AMI GY+ +  +  A ELFD M ++D +         
Sbjct: 258 CQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMD-------- 309

Query: 292 ELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDG 351
                                 P   TL S L A A L  L++GR +H YI+K G V+D 
Sbjct: 310 ----------------------PTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDI 347

Query: 352 VLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRM 411
           +LG  L+ MY+KCG I+ A+  F  ++ K    ++A++ G   +G A  AL +F  M   
Sbjct: 348 LLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLS 407

Query: 412 GMKPTAITFIGVLNACSHAGLVNDGR-RYFNMMINDYGIEPTIEHYGCLVDILCRTGYLE 470
           G+ P   T +GVL ACSH   +  G   +  +++  +  +  I     L+D+  + G + 
Sbjct: 408 GIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLI--CNALIDMYSKCGKIS 465

Query: 471 EAKSTIESMPMRPNFVIWMSLLSGARNH--GNKDIGEYAANNLIKVAPDTIGCYVVLSN 527
            A+     M  R + V W +++ G   H  G + +G +     + + PD I    +LS+
Sbjct: 466 FAREVFNRMD-RHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSS 523



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 108/400 (27%), Positives = 189/400 (47%), Gaps = 17/400 (4%)

Query: 116 RFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDL 175
           RF + +N+    +++   +  ++ E K+IH    K     D  VL  L  +Y    ++ L
Sbjct: 4   RFEVKNNYLH--LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVL 61

Query: 176 GRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGF 229
            RR+FD + +  ++ WN +I  Y   G  + A+ L+  M      P++  +++  ++   
Sbjct: 62  ARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNK--YTYPFVLKAC 119

Query: 230 SKCGKVEIAREIFYRMPNRNLVS----WNAMINGYMKAGDVDSACELFDDMEIRDLITWN 285
           S    +E   EI        L S      A+++ Y K G +  A  LF  M  RD++ WN
Sbjct: 120 SGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWN 179

Query: 286 SMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKN 345
           +MIAG  L G   +A++L+  M    + PN +T+V  L  V     L  G+ +H Y V+ 
Sbjct: 180 AMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRR 239

Query: 346 GFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLF 405
            F    V+GT L+ MY+KC  +  A  +F  +  +    W+AMI G        +AL+LF
Sbjct: 240 SFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELF 299

Query: 406 NKMC-RMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILC 464
           ++M  +  M PT +T   VL AC+    ++ GR+    +I   G    I     L+ +  
Sbjct: 300 DQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIK-LGSVLDILLGNTLLSMYA 358

Query: 465 RTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIG 504
           + G +++A    + M  + + V + +++SG   +GN  + 
Sbjct: 359 KCGVIDDAIRFFDEMNPKDS-VSFSAIVSGCVQNGNAAVA 397


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 238/668 (35%), Positives = 374/668 (55%), Gaps = 23/668 (3%)

Query: 36  ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIK 95
           E  Q+H   VK        + + LL  Y      +L  A  +F  + +  + V +N L+ 
Sbjct: 157 EVAQVHGHVVKVGYDSTLMVCNSLLDSYCK--TRSLGLACHLFKHMAEKDN-VTFNALLT 213

Query: 96  CYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF 155
            Y     +H+A+ LF  + D    P  FT   V+    ++  I+ G+Q+H  V K  F +
Sbjct: 214 GYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVVKCNFVW 273

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP 215
           + FV ++L+  Y+K   I   R++F  M + D +S+N LI      G VE +++LF E+ 
Sbjct: 274 NVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWNGRVEESLELFRELQ 333

Query: 216 ----DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS----WNAMINGYMKAGDVD 267
               DR  F +  L+   +    +E+ R+I  +    + +S     N++++ Y K     
Sbjct: 334 FTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEVLVGNSLVDMYAKCDKFG 393

Query: 268 SACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVA 327
            A  +F D+  +  + W ++I+GY   G   + L+L   M    +  + AT  S L A A
Sbjct: 394 EANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRAKIGADSATYASILRACA 453

Query: 328 GLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTA 387
            LA L  G+ +HS I+++G + +   G+ L+ MY+KCGSI+ AL +F+ +  +    W A
Sbjct: 454 NLASLTLGKQLHSRIIRSGCLSNVFSGSALVDMYAKCGSIKEALQMFQEMPVRNSVSWNA 513

Query: 388 MIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDY 447
           +I     +G    AL  F +M   G++P +++F+ +L ACSH GLV +G +YFN M   Y
Sbjct: 514 LISAYAQNGDGGHALRSFEQMIHSGLQPNSVSFLSILCACSHCGLVEEGLQYFNSMTQVY 573

Query: 448 GIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYA 507
            +EP  EHY  +VD+LCR+G  +EA+  +  MP  P+ ++W S+L+  R H N+++   A
Sbjct: 574 KLEPRREHYASMVDMLCRSGRFDEAEKLMARMPFEPDEIMWSSILNSCRIHKNQELAIKA 633

Query: 508 ANNLIKV------APDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEH 561
           A+ L  +      AP     YV +SNIYAAAG+WD V +V++ +++RG RK P  S +E 
Sbjct: 634 ADQLFNMKGLRDAAP-----YVSMSNIYAAAGEWDSVGKVKKALRERGIRKVPAYSWVEI 688

Query: 562 RGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENH 621
           +   H F   D SHPQT EI  KL E+  +++  G+ PD+T  L  ++++ + E+ L+ H
Sbjct: 689 KQKTHVFSANDTSHPQTKEITRKLDELEKQMEEQGYKPDSTCALHNVDEEVKVES-LKYH 747

Query: 622 SERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNG 681
           SER+AIAF LI+    SPI ++KNLR CNDCH+  K++S I NREI VRD+SRFHHF +G
Sbjct: 748 SERIAIAFALISTPKGSPILVMKNLRACNDCHAAIKVISKIVNREITVRDSSRFHHFTDG 807

Query: 682 SCSCKDFW 689
           SCSCKD+W
Sbjct: 808 SCSCKDYW 815



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 126/440 (28%), Positives = 214/440 (48%), Gaps = 13/440 (2%)

Query: 70  NLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVI 129
           NL  ARS+FD ++Q  S+V + +LI  Y  + R  EA  LF D+    ++PD+ TL  ++
Sbjct: 88  NLSTARSLFDSMVQR-SVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMVPDHITLATLL 146

Query: 130 KGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLV 189
            G     ++ E  Q+HG V K+G+     V +SL+  Y K   + L   +F  M +KD V
Sbjct: 147 SGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNV 206

Query: 190 SWNCLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRM 245
           ++N L+ GY K+G    A+ LF +M D       F++  ++    +   +E  +++   +
Sbjct: 207 TFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFV 266

Query: 246 PNRNLVSW-----NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEA 300
              N V W     NA+++ Y K   +  A +LF +M   D I++N +I     NGR  E+
Sbjct: 267 VKCNFV-WNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWNGRVEES 325

Query: 301 LELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQM 360
           LEL   +             + LS  A    L  GR +HS  +    + + ++G  L+ M
Sbjct: 326 LELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEVLVGNSLVDM 385

Query: 361 YSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITF 420
           Y+KC     A  +F  ++ +    WTA+I G    G+    L LF +M R  +   + T+
Sbjct: 386 YAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRAKIGADSATY 445

Query: 421 IGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP 480
             +L AC++   +  G++  + +I   G    +     LVD+  + G ++EA    + MP
Sbjct: 446 ASILRACANLASLTLGKQLHSRIIRS-GCLSNVFSGSALVDMYAKCGSIKEALQMFQEMP 504

Query: 481 MRPNFVIWMSLLSGARNHGN 500
           +R N V W +L+S    +G+
Sbjct: 505 VR-NSVSWNALISAYAQNGD 523



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 64/194 (32%), Positives = 108/194 (55%)

Query: 233 GKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYE 292
           G +  AR++F  MP++N++S N MI GY+K+G++ +A  LFD M  R ++TW  +I GY 
Sbjct: 56  GDLGAARKLFDEMPHKNVISTNTMIMGYLKSGNLSTARSLFDSMVQRSVVTWTMLIGGYA 115

Query: 293 LNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV 352
            + RF+EA  L   M    ++P+  TL + LS       +N+   +H ++VK G+    +
Sbjct: 116 QHNRFLEAFNLFADMCRHGMVPDHITLATLLSGFTEFESVNEVAQVHGHVVKVGYDSTLM 175

Query: 353 LGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG 412
           +   L+  Y K  S+  A  +F+ +++K    + A++ G    G    A++LF KM  +G
Sbjct: 176 VCNSLLDSYCKTRSLGLACHLFKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLG 235

Query: 413 MKPTAITFIGVLNA 426
            +P+  TF  VL A
Sbjct: 236 FRPSEFTFAAVLTA 249



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/402 (22%), Positives = 169/402 (42%), Gaps = 41/402 (10%)

Query: 142 KQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKK 201
           + +   + K GF  +    +  V  + + G++   R++FD M  K+++S N +I GY+K 
Sbjct: 27  QHVDASMIKTGFDPNTCRFNFQVQTHLQRGDLGAARKLFDEMPHKNVISTNTMIMGYLKS 86

Query: 202 GEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS--------- 252
           G +  A  LFD M  R + +WT L+ G+++  +   A  +F  M    +V          
Sbjct: 87  GNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMVPDHITLATLL 146

Query: 253 ------------------------------WNAMINGYMKAGDVDSACELFDDMEIRDLI 282
                                          N++++ Y K   +  AC LF  M  +D +
Sbjct: 147 SGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNV 206

Query: 283 TWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYI 342
           T+N+++ GY   G   +A+ L   M      P++ T  + L+A   +  +  G+ +HS++
Sbjct: 207 TFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFV 266

Query: 343 VKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQAL 402
           VK  FV +  +   L+  YSK   I  A  +F  + +     +  +I     +G   ++L
Sbjct: 267 VKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWNGRVEESL 326

Query: 403 DLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDI 462
           +LF ++           F  +L+  +++  +  GR+  +  I    I   +     LVD+
Sbjct: 327 ELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEVLVG-NSLVDM 385

Query: 463 LCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIG 504
             +     EA      +  + + V W +L+SG    G  + G
Sbjct: 386 YAKCDKFGEANRIFADLAHQSS-VPWTALISGYVQKGLHEDG 426


>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 247/691 (35%), Positives = 369/691 (53%), Gaps = 49/691 (7%)

Query: 42  ALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQ 101
           A SV TN+  H G+  RLL   ++  + +   A+ +FD I Q P     + LI  +    
Sbjct: 57  APSVPTNIPSHLGL--RLLKAALN--VGDFRRAQQLFDNIPQ-PDPTTCSTLISAFTTRG 111

Query: 102 RSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLS 161
             +EA+ L+  L  R + P N     V K     G     K++H    + G   D F+ +
Sbjct: 112 LPNEAIRLYASLRARGIKPHNSVFLTVAKACGASGDASRVKEVHDDAIRCGMMSDAFLGN 171

Query: 162 SLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------P 215
           +L+  Y K   ++  RRVFD +  KD+VSW  +   YV  G   + + +F EM      P
Sbjct: 172 ALIHAYGKCKCVEGARRVFDDLVVKDVVSWTSMSSCYVNCGLPRLGLAVFCEMGWNGVKP 231

Query: 216 D---------------------------------RDLFSWTCLVDGFSKCGKVEIAREIF 242
           +                                  ++F  + LV  +++C  V+ AR +F
Sbjct: 232 NSVTLSSILPACSELKDLKSGRAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQARLVF 291

Query: 243 YRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIR----DLITWNSMIAGYELNGRFM 298
             MP+R++VSWN ++  Y    + D    LF  M  +    D  TWN++I G   NG+  
Sbjct: 292 DLMPHRDVVSWNGVLTAYFTNREYDKGLALFSQMSSKGVEADEATWNAVIGGCMENGQTE 351

Query: 299 EALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLI 358
           +A+E+L  M      PN  T+ S L A + L  L  G+ +H Y+ ++  + D    T L+
Sbjct: 352 KAVEMLRKMQNLGFKPNQITISSFLPACSILESLRMGKEVHCYVFRHWLIGDLTTMTALV 411

Query: 359 QMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI 418
            MY+KCG +  +  VF  I +K V  W  MI+   MHG   + L LF  M + G+KP ++
Sbjct: 412 YMYAKCGDLNLSRNVFDMICRKDVVAWNTMIIANAMHGNGREVLLLFESMLQSGIKPNSV 471

Query: 419 TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIES 478
           TF GVL+ CSH+ LV +G + FN M  D+ +EP   HY C+VD+  R G L EA   I+ 
Sbjct: 472 TFTGVLSGCSHSRLVEEGLQIFNSMGRDHLVEPDANHYACMVDVFSRAGRLHEAYEFIQR 531

Query: 479 MPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKV 538
           MPM P    W +LL   R + N ++ + +AN L ++ P+  G YV L NI   A  W + 
Sbjct: 532 MPMEPTASAWGALLGACRVYKNVELAKISANKLFEIEPNNPGNYVSLFNILVTAKLWSEA 591

Query: 539 SEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHV 598
           SE R +MK+RG  K PG S ++    +H FVVGDK++ ++D+I++ L E+  K+K+AG+ 
Sbjct: 592 SEARILMKERGITKTPGCSWLQVGDRVHTFVVGDKNNMESDKIYNFLDELGEKMKSAGYK 651

Query: 599 PDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKL 658
           PDT  VL  I DQ+EK   L +HSE+LA+AFG++N+  +S IR+ KNLR+C DCH+  K 
Sbjct: 652 PDTDYVLQDI-DQEEKAESLCSHSEKLAVAFGILNLNGQSSIRVFKNLRICGDCHNAIKY 710

Query: 659 LSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           +S +    IIVRD+ RFHHF+NG+CSC+D W
Sbjct: 711 VSKVVGVTIIVRDSLRFHHFRNGNCSCQDLW 741


>gi|356534289|ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Glycine max]
          Length = 591

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 224/572 (39%), Positives = 332/572 (58%), Gaps = 26/572 (4%)

Query: 142 KQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKK 201
           KQ+H  +   G  F  + LS L++  +KF        +F+ + +  L  +N LI      
Sbjct: 22  KQVHAQMLTTGLSFQTYYLSHLLNTSSKFAST-YAFTIFNHIPNPTLFLYNTLISSLTHH 80

Query: 202 G-EVEVAMKLFDEM-------PDRDLFSW---TCLVDGFSKCGKVEIAREIFYRMPNRNL 250
             ++ +A  L++ +       P+   F      C    + + G    A  + +  P  + 
Sbjct: 81  SDQIHLAFSLYNHILTHKTLQPNSFTFPSLFKACASHPWLQHGPPLHAHVLKFLQPPYDP 140

Query: 251 VSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRF------------- 297
              N+++N Y K G +  +  LFD +   DL TWN+M+A Y  +                
Sbjct: 141 FVQNSLLNFYAKYGKLCVSRYLFDQISEPDLATWNTMLAAYAQSASHVSYSTSFEDADMS 200

Query: 298 MEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLL 357
           +EAL L   M +  + PN+ TLV+ +SA + L  L++G W H Y+++N   ++  +GT L
Sbjct: 201 LEALHLFCDMQLSQIKPNEVTLVALISACSNLGALSQGAWAHGYVLRNNLKLNRFVGTAL 260

Query: 358 IQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA 417
           + MYSKCG +  A  +F  +S +    + AMI G  +HG   QAL+L+  M    + P  
Sbjct: 261 VDMYSKCGCLNLACQLFDELSDRDTFCYNAMIGGFAVHGHGNQALELYRNMKLEDLVPDG 320

Query: 418 ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIE 477
            T +  + ACSH GLV +G   F  M   +G+EP +EHYGCL+D+L R G L+EA+  ++
Sbjct: 321 ATIVVTMFACSHGGLVEEGLEIFESMKGVHGMEPKLEHYGCLIDLLGRAGRLKEAEERLQ 380

Query: 478 SMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDK 537
            MPM+PN ++W SLL  A+ HGN ++GE A  +LI++ P+T G YV+LSN+YA+ G+W+ 
Sbjct: 381 DMPMKPNAILWRSLLGAAKLHGNLEMGEAALKHLIELEPETSGNYVLLSNMYASIGRWND 440

Query: 538 VSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGH 597
           V  VR +MK  G  K PG S +E  G +HEF+ GDK+HP + EI+SK+ E+  +L   GH
Sbjct: 441 VKRVRMLMKDHGVDKLPGFSLVEINGAMHEFLTGDKAHPFSKEIYSKIGEINRRLLEYGH 500

Query: 598 VPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTK 657
            P T++VL  +E++ +KE  L  HSERLAIAF LI   S  PIRI+KNLRVC DCH++TK
Sbjct: 501 KPRTSEVLFDVEEE-DKEDFLSYHSERLAIAFALIASSSSMPIRIIKNLRVCGDCHAITK 559

Query: 658 LLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           L+S  Y R+IIVRD +RFHHFK+GSCSC D+W
Sbjct: 560 LISAAYQRDIIVRDRNRFHHFKDGSCSCLDYW 591



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 138/307 (44%), Gaps = 45/307 (14%)

Query: 13  HALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLH 72
           H   QH P  LH ++LKF                    Y   + + LL+ Y       L 
Sbjct: 117 HPWLQHGPP-LHAHVLKFLQP----------------PYDPFVQNSLLNFYAK--YGKLC 157

Query: 73  YARSIFDRILQHPSLVLYNLLIKCYVFNQRSH--------------EALTLFCDLLDRFL 118
            +R +FD+I + P L  +N ++  Y     SH              EAL LFCD+    +
Sbjct: 158 VSRYLFDQISE-PDLATWNTMLAAYA-QSASHVSYSTSFEDADMSLEALHLFCDMQLSQI 215

Query: 119 LPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRR 178
            P+  TL  +I   + LGA+ +G   HG V +     ++FV ++LV MY+K G ++L  +
Sbjct: 216 KPNEVTLVALISACSNLGALSQGAWAHGYVLRNNLKLNRFVGTALVDMYSKCGCLNLACQ 275

Query: 179 VFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFS--WTCLVDGF--SKCGK 234
           +FD + D+D   +N +I G+   G    A++L+  M   DL     T +V  F  S  G 
Sbjct: 276 LFDELSDRDTFCYNAMIGGFAVHGHGNQALELYRNMKLEDLVPDGATIVVTMFACSHGGL 335

Query: 235 VEIAREIFYRMP-----NRNLVSWNAMINGYMKAGDVDSACELFDDMEIR-DLITWNSMI 288
           VE   EIF  M         L  +  +I+   +AG +  A E   DM ++ + I W S++
Sbjct: 336 VEEGLEIFESMKGVHGMEPKLEHYGCLIDLLGRAGRLKEAEERLQDMPMKPNAILWRSLL 395

Query: 289 AGYELNG 295
              +L+G
Sbjct: 396 GAAKLHG 402


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 241/687 (35%), Positives = 397/687 (57%), Gaps = 21/687 (3%)

Query: 20  PSRLHWN-ILKFSSTHKET---QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYAR 75
           P+R  +  +LK  S  KE    +++H    +  L  +  +S+ L+  Y       L  A+
Sbjct: 117 PNRFTFPFVLKACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAK--CGCLDDAK 174

Query: 76  SIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARL 135
            +FD+ +    +V +N +I  +  ++ S++ +      +   + P++ T+  V+   A++
Sbjct: 175 EVFDK-MHKRDVVAWNSMISGFSLHEGSYDEVARLLVQMQNDVSPNSSTIVGVLPAVAQV 233

Query: 136 GAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD-DKDLVSWNCL 194
            +++ GK+IHG   + GF  D  V + ++ +Y K   ID  RR+FD M   K+ V+W+ +
Sbjct: 234 NSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAM 293

Query: 195 IDGYVKKGEVEVAMKLFDEM----PDRDLFSWTCLVDGFSKCGKV-EIAREIF---YRMP 246
           +  YV    +  A++LF ++     D  + S   L      C  + +++       Y + 
Sbjct: 294 VGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIK 353

Query: 247 N---RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALEL 303
           +    +L+  N +++ Y K G ++ A   F++M++RD +++ ++I+GY  NG   E L +
Sbjct: 354 SGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRM 413

Query: 304 LETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSK 363
              M +  + P  ATL S L A A LA L+ G   H Y +  GF  D ++   LI MY+K
Sbjct: 414 FLEMQLSGINPEKATLASVLPACAHLAGLHYGSCSHCYAIICGFTADTMICNALIDMYAK 473

Query: 364 CGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGV 423
           CG I++A  VF  + K+ +  W  MI+  G+HG+  +AL LF+ M   G+KP  +TFI +
Sbjct: 474 CGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQSEGLKPDDVTFICL 533

Query: 424 LNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRP 483
           ++ACSH+GLV +G+ +FN M  D+GI P +EHY C+VD+L R G  +E  S IE MP+ P
Sbjct: 534 ISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYACMVDLLSRAGLFKEVHSFIEKMPLEP 593

Query: 484 NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVRE 543
           +  +W +LLS  R + N ++GE  +  + K+ P++ G +V+LSN+Y+A G+WD  ++VR 
Sbjct: 594 DVRVWGALLSACRVYKNVELGEGVSKKIQKLGPESTGNFVLLSNMYSAVGRWDDAAQVRF 653

Query: 544 MMKKRGFRKDPGSSSIEHRGVLHEFVVGD-KSHPQTDEIHSKLSEMRNKLKAAGHVPDTT 602
             K++GF K PG S IE  GV+H F+ G  +SHPQ  +I +KL E+  ++K  G+  +++
Sbjct: 654 TQKEQGFEKSPGCSWIEISGVVHTFLGGGYRSHPQLTQISNKLDELLVEMKRLGYQAESS 713

Query: 603 QVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGI 662
            V   +E++ EKE  L  HSE+LAIAFG++++     I + KNLRVC DCH+  K +S +
Sbjct: 714 YVFQDVEEE-EKERVLLYHSEKLAIAFGILSLSPDKHIIVTKNLRVCGDCHTAIKFISLV 772

Query: 663 YNREIIVRDNSRFHHFKNGSCSCKDFW 689
             R+I VRD SRFHHFK+G C+C DFW
Sbjct: 773 TKRDITVRDASRFHHFKDGICNCGDFW 799



 Score =  189 bits (480), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 150/513 (29%), Positives = 253/513 (49%), Gaps = 40/513 (7%)

Query: 1   MQTQTLQHSSPIHALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLL 60
           +Q+++L     IH   QHL   LH        TH+           TNL        +L+
Sbjct: 20  IQSKSLFRGKLIH---QHLLKCLH-------RTHE-----------TNLTNFDVPFEKLV 58

Query: 61  SLYVDPHINNLHYARSIFDRILQHP-SLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLL 119
            LY+    + L  AR +FD++   P ++VL+NLLI+ Y +N    EA+ L+  +L   + 
Sbjct: 59  DLYIA--CSELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGIT 116

Query: 120 PDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRV 179
           P+ FT P V+K  + L    EG++IH  + +L    + +V ++LV  YAK G +D  + V
Sbjct: 117 PNRFTFPFVLKACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEV 176

Query: 180 FDAMDDKDLVSWNCLIDGY-VKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIA 238
           FD M  +D+V+WN +I G+ + +G  +   +L  +M +    + + +V       +V   
Sbjct: 177 FDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQMQNDVSPNSSTIVGVLPAVAQVNSL 236

Query: 239 R---EIFYRMPNR----NLVSWNAMINGYMKAGDVDSACELFDDMEI-RDLITWNSMIAG 290
           R   EI      R    ++V    +++ Y K   +D A  +FD M I ++ +TW++M+  
Sbjct: 237 RHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGA 296

Query: 291 YELNGRFMEALELLETMLI--GDVLPNDA-TLVSALSAVAGLAVLNKGRWMHSYIVKNGF 347
           Y +     EALEL   +L+   DV+   A TL + +   A L  L+ G  +H Y +K+GF
Sbjct: 297 YVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSGF 356

Query: 348 VVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNK 407
           V+D ++G  L+ MY+KCG I  A+  F  +  +    +TA+I G   +G + + L +F +
Sbjct: 357 VLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLE 416

Query: 408 MCRMGMKPTAITFIGVLNACSH-AGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRT 466
           M   G+ P   T   VL AC+H AGL      +   +I  +  +  I     L+D+  + 
Sbjct: 417 MQLSGINPEKATLASVLPACAHLAGLHYGSCSHCYAIICGFTADTMI--CNALIDMYAKC 474

Query: 467 GYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
           G ++ A+   + M  R   V W +++     HG
Sbjct: 475 GKIDTARKVFDRMHKR-GIVSWNTMIIAYGIHG 506



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 124/445 (27%), Positives = 203/445 (45%), Gaps = 62/445 (13%)

Query: 160 LSSLVSMYAKFGEIDLGRRVFDAMD--DKDLVSWNCLIDGYVKKGEVEVAMKLFDEM--- 214
              LV +Y    E+ + R VFD M    K++V WN LI  Y   G  E A+ L+ +M   
Sbjct: 54  FEKLVDLYIACSELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGY 113

Query: 215 ---PDRDLFSWTCLVDGFSKCGKVEIAREIF-----YRMPNRNLVSWNAMINGYMKAGDV 266
              P+R  F++  ++   S   +    REI       R+ +   VS  A+++ Y K G +
Sbjct: 114 GITPNR--FTFPFVLKACSALKEASEGREIHCDIKRLRLESNVYVS-TALVDFYAKCGCL 170

Query: 267 DSACELFDDMEIRDLITWNSMIAGYELN-GRFMEALELLETMLIGDVLPNDATLVSALSA 325
           D A E+FD M  RD++ WNSMI+G+ L+ G + E   LL  M   DV PN +T+V  L A
Sbjct: 171 DDAKEVFDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQMQ-NDVSPNSSTIVGVLPA 229

Query: 326 VAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVF--RAISKKKVG 383
           VA +  L  G+ +H + V+ GFV D V+GT ++ +Y KC  I+ A  +F    I K +V 
Sbjct: 230 VAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVT 289

Query: 384 HWTAMIVGLGMHGMATQALDLFNKMCRMG---MKPTAITFIGVLNACSHAGLVNDGRRYF 440
            W+AM+    +     +AL+LF ++  +    +  +A+T   V+  C++   ++ G    
Sbjct: 290 -WSAMVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLH 348

Query: 441 NMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGN 500
              I   G    +     L+ +  + G +  A      M +R + V + +++SG   +GN
Sbjct: 349 CYAIKS-GFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLR-DAVSFTAIISGYVQNGN 406

Query: 501 KDIG--EYAANNLIKVAPDTIG---------------------CYVV------------- 524
            + G   +    L  + P+                        CY +             
Sbjct: 407 SEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCSHCYAIICGFTADTMICNA 466

Query: 525 LSNIYAAAGQWDKVSEVREMMKKRG 549
           L ++YA  G+ D   +V + M KRG
Sbjct: 467 LIDMYAKCGKIDTARKVFDRMHKRG 491


>gi|242062682|ref|XP_002452630.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
 gi|241932461|gb|EES05606.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
          Length = 605

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 222/536 (41%), Positives = 310/536 (57%), Gaps = 3/536 (0%)

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP 215
           D    ++L+S +   G+ID   RVF  M  +D+ SWN ++ G  K G +E A  +F  MP
Sbjct: 71  DAVSYNTLLSCHFACGDIDGAWRVFSTMPVRDVTSWNTMVSGLSKNGAIEEAEAMFRAMP 130

Query: 216 DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR-NLVSWNAMINGYMKAGDVDSACELFD 274
            R+  SW  +V   +  G +  A  +F   P + + + W AM++GYM  G+V  A E F 
Sbjct: 131 ARNAVSWNAMVAARASSGDMGAAENLFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEYFR 190

Query: 275 DMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL-PNDATLVSALSAVAGLAVLN 333
            M +R+L++WN+++AGY  N R  +AL + +TM+   ++ PN +TL S L   + L+ L 
Sbjct: 191 AMPVRNLVSWNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLLGCSNLSALG 250

Query: 334 KGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLG 393
            GR +H + +K        +GT L+ MY KCG ++ A  +F  +  K +  W AMI G  
Sbjct: 251 FGRQVHQWCMKLPLGRSITVGTSLLSMYCKCGDLDDACKLFDEMHTKDIVAWNAMISGYA 310

Query: 394 MHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTI 453
            HG   +A+ LF KM   G+ P  IT + VL AC H GL + G + F  M   Y IEP +
Sbjct: 311 QHGGGRKAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYNIEPQV 370

Query: 454 EHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIK 513
           +HY C+VD+LCR G LE A + I SMP  P+   + +LL+  R + N +  E+AA  LI+
Sbjct: 371 DHYSCMVDLLCRAGLLERAVNMIHSMPFEPHPSAYGTLLTACRVYKNLEFAEFAARKLIE 430

Query: 514 VAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDK 573
             P   G YV L+NIYA A +WD VS VR  MK     K PG S +E +GV HEF   D+
Sbjct: 431 QDPQNAGAYVQLANIYAVANRWDDVSRVRRWMKDNAVVKTPGYSWMEIKGVRHEFRSNDR 490

Query: 574 SHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLIN 633
            HPQ D IH KL  +   +KA G+ PD    L  +E +  K   L  HSE+LAIAFGLI+
Sbjct: 491 LHPQLDLIHDKLDRLGKLMKAMGYSPDLDFALHDVE-ESLKSQMLMRHSEKLAIAFGLIS 549

Query: 634 VKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
                 +RI KNLR+C DCH+  KL+S I +REII+RD +RFHHF+ G CSC D+W
Sbjct: 550 TSPGMTLRIFKNLRICGDCHNAAKLISKIEDREIILRDTTRFHHFRGGHCSCGDYW 605



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 61/178 (34%), Positives = 99/178 (55%), Gaps = 5/178 (2%)

Query: 57  SRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL-D 115
           + ++S Y+D    N+  A   F R +   +LV +N ++  YV N R+ +AL +F  ++ D
Sbjct: 170 TAMVSGYMD--TGNVQKAMEYF-RAMPVRNLVSWNAVVAGYVKNSRAGDALRVFKTMVED 226

Query: 116 RFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDL 175
             + P+  TL  V+ G + L A+  G+Q+H    KL  G    V +SL+SMY K G++D 
Sbjct: 227 AIVQPNPSTLSSVLLGCSNLSALGFGRQVHQWCMKLPLGRSITVGTSLLSMYCKCGDLDD 286

Query: 176 GRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLF-SWTCLVDGFSKC 232
             ++FD M  KD+V+WN +I GY + G    A+KLF++M D  +   W  L+   + C
Sbjct: 287 ACKLFDEMHTKDIVAWNAMISGYAQHGGGRKAIKLFEKMKDEGVVPDWITLLAVLTAC 344



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 71/324 (21%), Positives = 125/324 (38%), Gaps = 65/324 (20%)

Query: 265 DVDSACELFDDMEIRDLITWNSMIAGYELN---GRFMEALELLETMLIGDVLPNDATLVS 321
           D+  A E F   +++   T+N ++AGY      GR  +A  L +++   D +  + TL+S
Sbjct: 22  DLAGAEEAFASTQLKTTTTYNCLLAGYAKASGPGRLADARRLFDSIPHPDAVSYN-TLLS 80

Query: 322 ----------ALSAVAGLAVLNKGRW--MHSYIVKNGFV--------------------- 348
                     A    + + V +   W  M S + KNG +                     
Sbjct: 81  CHFACGDIDGAWRVFSTMPVRDVTSWNTMVSGLSKNGAIEEAEAMFRAMPARNAVSWNAM 140

Query: 349 -----------------------VDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHW 385
                                   D +L T ++  Y   G+++ A+  FRA+  + +  W
Sbjct: 141 VAARASSGDMGAAENLFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEYFRAMPVRNLVSW 200

Query: 386 TAMIVGLGMHGMATQALDLFNKMCRMGM-KPTAITFIGVLNACSHAGLVNDGRRYFNMMI 444
            A++ G   +  A  AL +F  M    + +P   T   VL  CS+   +  GR+     +
Sbjct: 201 NAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLLGCSNLSALGFGRQVHQWCM 260

Query: 445 NDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGN--KD 502
               +  +I     L+ + C+ G L++A    + M  + + V W +++SG   HG   K 
Sbjct: 261 K-LPLGRSITVGTSLLSMYCKCGDLDDACKLFDEMHTK-DIVAWNAMISGYAQHGGGRKA 318

Query: 503 IGEYAANNLIKVAPDTIGCYVVLS 526
           I  +       V PD I    VL+
Sbjct: 319 IKLFEKMKDEGVVPDWITLLAVLT 342


>gi|345505216|gb|AEN99832.1| chlororespiratory reduction 4 [Capsella bursa-pastoris]
          Length = 617

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 237/591 (40%), Positives = 340/591 (57%), Gaps = 48/591 (8%)

Query: 26  NILKFSSTHKETQQLHALSVKTNLIYHSGISSRL-LSLYVDPHINNLHYARSIFDRI--- 81
            +L    T ++  ++HA  + T LI +S +S+R+ L+    P      +AR +F      
Sbjct: 20  QLLGRCKTSEDVSKIHARLITTGLIKNSNLSTRIVLAFAASPRPYLAEFARLVFREYHVC 79

Query: 82  -------LQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAAR 134
                  ++ P   L+N +IK +   +   +AL LFC +L+  +  D F++  V+K  +R
Sbjct: 80  SSSPGGEVEDP--FLWNAVIKSHSHGKDPKQALLLFCLMLENGVSVDKFSMSLVLKACSR 137

Query: 135 LGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCL 194
           LG +K G QIHG++ K G   D F+ + L+ +Y K G +   R++FD M  +D VS+N +
Sbjct: 138 LGFVKGGLQIHGILRKTGLCSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSFNSM 197

Query: 195 IDGYVKKGEVEVAMKLFD----------------------------------EMPDRDLF 220
           IDGYVK+G +E A +LFD                                  EMP++DL 
Sbjct: 198 IDGYVKRGLIESARELFDLMPREVKNLISWNSIISGYAQTSDGVDIASNLFAEMPEKDLI 257

Query: 221 SWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRD 280
           SW  ++DG+ K G++E A+++F  MP R++V+W  MI+GY K G V  A  LFD M  RD
Sbjct: 258 SWNSMIDGYVKHGRIEDAKDLFDAMPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMPHRD 317

Query: 281 LITWNSMIAGYELNGRFMEALELLETMLIGDVL-PNDATLVSALSAVAGLAVLNKGRWMH 339
           ++++NSM+AGY  N   MEALE+   M     L P++ TLV  LSA+A L  L+K   MH
Sbjct: 318 VVSYNSMMAGYVQNKYHMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMH 377

Query: 340 SYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMAT 399
            YIV+  F + G LG  LI MYSKCGSI+ A+ VF  I  K + HW AMI GL +HG+  
Sbjct: 378 LYIVEKQFFLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGE 437

Query: 400 QALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCL 459
            A D+  ++ R  +KP  ITF+GVLNACSH+GLV +G   F +M   + IEP ++HYGC+
Sbjct: 438 SAFDMLLQIERRSIKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCM 497

Query: 460 VDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTI 519
           VDIL R+G +E AK+ I+ MP+ PN VIW + L+   +H   + GE    +LI  A    
Sbjct: 498 VDILSRSGSIELAKNLIQEMPIEPNDVIWRTFLTACNHHKEFETGELVGKHLILQAGYNP 557

Query: 520 GCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVV 570
             YV+LSN+YA+ G+W  V  +R MMK+R   K PG S IE  G +HEF V
Sbjct: 558 SSYVLLSNMYASFGKWKDVRRIRTMMKERKIEKIPGCSWIELDGRVHEFFV 608


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 237/670 (35%), Positives = 355/670 (52%), Gaps = 79/670 (11%)

Query: 98  VFNQRSH--EALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF 155
           +F++ +H    + +F  +L + ++PD+  LP VIK  A L A++ GKQ+H      G G 
Sbjct: 48  IFSKLNHFGHVIRVFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQMHCFALVSGLGL 107

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK----------------------------- 186
           D  VLSSL+ MY +F  +   R VFD +                                
Sbjct: 108 DSVVLSSLLHMYVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELFYQTR 167

Query: 187 ------DLVSWNCLIDGYVKKGEVEVAMKLFDEM------PD------------------ 216
                 +LVSWN +I G+ + G    A+ +F  M      PD                  
Sbjct: 168 DLGVELNLVSWNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPL 227

Query: 217 ---------------RDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYM 261
                           D F  + L+D + KC        +F  M   ++ + NA++ G  
Sbjct: 228 MGIQIHCYVIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLS 287

Query: 262 KAGDVDSACELFDDMEIRDL--ITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATL 319
           + G VD+A E+F   +  DL  ++W SMIA    NG+ MEALEL   M I  V PN  T+
Sbjct: 288 RNGLVDNALEVFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTI 347

Query: 320 VSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK 379
              L A   +A L  G+  H + ++NG   D  +G+ LI MY+KCG + ++   F  +  
Sbjct: 348 PCLLPACGNIAALLHGKAAHCFSLRNGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPN 407

Query: 380 KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRY 439
           + +  W +++ G  MHG   +A+++F  M R G KP  ++F  VL+AC+  GL  +G  Y
Sbjct: 408 RNLVSWNSLMAGYAMHGKTFEAINIFELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWFY 467

Query: 440 FNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
           F+ M  ++G+E  +EHY C+V +L R+G LEEA + I+ MP  P+  +W +LLS  R H 
Sbjct: 468 FDSMSRNHGVEARMEHYSCMVTLLGRSGRLEEAYAMIKQMPFEPDSCVWGALLSSCRVHN 527

Query: 500 NKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSI 559
             D+GE AA  + ++ P   G Y++LSNIYA+   W +V  VR+MM+ RG +K+PG S I
Sbjct: 528 RVDLGEIAAKRVFELEPRNPGNYILLSNIYASKAMWVEVDMVRDMMRSRGLKKNPGYSWI 587

Query: 560 EHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELE 619
           E +  +H  + GD SHPQ  +I  KL+++  ++K +G+VP T  VL  +E+Q +KE  L 
Sbjct: 588 EIKNKVHMLLAGDSSHPQMPQIIEKLAKLTVEMKKSGYVPHTDFVLQDVEEQ-DKEQILC 646

Query: 620 NHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFK 679
            HSE+LA+  GL+N K   P++++KNLR+C DCH+V K +S    REI VRD +RFH FK
Sbjct: 647 GHSEKLAVVLGLLNTKPGFPLQVIKNLRICRDCHAVIKFISDFEKREIFVRDTNRFHQFK 706

Query: 680 NGSCSCKDFW 689
            G CSC D+W
Sbjct: 707 GGVCSCGDYW 716


>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 235/580 (40%), Positives = 342/580 (58%), Gaps = 10/580 (1%)

Query: 29  KFSSTHKET-----QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQ 83
           K    HK T     +++HA  +K NL     ++ +L+S +   H  NL  A ++F++I Q
Sbjct: 26  KLQDLHKCTDFNHIKEVHAQIIKRNLHNDLYVAPKLISAFSLCHQMNL--AVNVFNQI-Q 82

Query: 84  HPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQ 143
            P++ LYN LI+ +V N +S +A   F D+    L  DNFT P ++K     G +   + 
Sbjct: 83  DPNVHLYNTLIRAHVQNSQSLKAFATFFDMQKNGLFADNFTYPFLLKACNGKGWLPTVQM 142

Query: 144 IHGLVFKLGFGFDKFVLSSLVSMYAKFG--EIDLGRRVFDAMDDKDLVSWNCLIDGYVKK 201
           IH  V K GF  D FV +SL+  Y+K G   ++   ++F  M +KDLVSWN +I G VK 
Sbjct: 143 IHCHVEKYGFFGDLFVPNSLIDSYSKCGLLGVNYAMKLFMEMGEKDLVSWNSMIGGLVKA 202

Query: 202 GEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYM 261
           G++  A KLFDEM +RD  SW  ++DG+ K G++  A  +F +MP RN+VSW+ M++GY 
Sbjct: 203 GDLGRARKLFDEMAERDAVSWNTILDGYVKAGEMSQAFNLFEKMPERNVVSWSTMVSGYC 262

Query: 262 KAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVS 321
           K GD++ A  LFD M  ++L+TW  +I+G+   G   EA  L   M    + P+D TL+S
Sbjct: 263 KTGDMEMARMLFDKMPFKNLVTWTIIISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLIS 322

Query: 322 ALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKK 381
            L+A A   +L  G+ +H+ I K        +   L+ MY+KCG ++ AL++F  +S + 
Sbjct: 323 ILAACAESGLLVLGKKVHASIKKIRIKCSVNVSNALVDMYAKCGRVDKALSIFNEMSMRD 382

Query: 382 VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFN 441
           +  W  M+ GL MHG   +A+ LF+KM + G KP  +T I +L AC+HAG V+ G  YFN
Sbjct: 383 LVSWNCMLQGLAMHGHGEKAIQLFSKMQQEGFKPDKVTLIAILCACTHAGFVDQGLSYFN 442

Query: 442 MMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNK 501
            M  D+GI P IEHYGC++D+L R G LEEA   ++SMPM PN VIW +LL   R H   
Sbjct: 443 SMERDHGIVPHIEHYGCMIDLLGRGGRLEEAFRLVQSMPMEPNDVIWGTLLGACRVHNAV 502

Query: 502 DIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEH 561
            + E   + LI +     G Y +LSNI+AAAG W+ V+ +R  MK  G +K  G+SSIE 
Sbjct: 503 PLAEKVLDRLITLEQSDPGNYSMLSNIFAAAGDWNSVANMRLQMKSTGVQKPSGASSIEL 562

Query: 562 RGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDT 601
              +HEF V DKSHP+TD+I+  L ++   LK   + P+ 
Sbjct: 563 DDEVHEFTVFDKSHPETDKIYQILVKLGQDLKQVAYAPEA 602


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 245/732 (33%), Positives = 389/732 (53%), Gaps = 82/732 (11%)

Query: 36  ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIK 95
           +T Q HA  +K+       IS++L++ Y   + N  + A  I   I   P++  ++ LI 
Sbjct: 33  KTTQAHARILKSGAQNDGYISAKLIASY--SNYNCFNDADLILQSI-PDPTVYSFSSLIY 89

Query: 96  CYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF 155
                +   +++ +F  +    L+PD   LP + K  A L A K GKQIH +    G   
Sbjct: 90  ALTKAKLFSQSIGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDM 149

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP 215
           D FV  SL  MY + G +   R+VFD M +KD+V+ + L+ GY +KG +E  +++  EM 
Sbjct: 150 DAFVQGSLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEME 209

Query: 216 ----DRDLFSWTCLVDGFSKCGKVEIAREIFYRM------PNRNLVS------------- 252
               + ++ SW  ++ GF++ G  + A  +F +M      P++  VS             
Sbjct: 210 KSGIEPNIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLN 269

Query: 253 --------------------WNAMINGYMKAGDVDSACELFDDMEIRD------------ 280
                                +AM++ Y K+G V    +LFD+ E+ +            
Sbjct: 270 MGRQIHGYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLS 329

Query: 281 -----------------------LITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDA 317
                                  +++W S+IAG   NG+ +EALEL   M +  V PN  
Sbjct: 330 RNGLVDKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRV 389

Query: 318 TLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAI 377
           T+ S L A   +A L  GR  H + V+   + D  +G+ LI MY+KCG I+ +  VF  +
Sbjct: 390 TIPSMLPACGNIAALGHGRSTHGFAVRVHLLDDVHVGSALIDMYAKCGRIKMSQIVFNMM 449

Query: 378 SKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGR 437
             K +  W +++ G  MHG A + + +F  + R  +KP  I+F  +L+AC   GL ++G 
Sbjct: 450 PTKNLVCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGW 509

Query: 438 RYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARN 497
           +YFNMM  +YGI+P +EHY C+V++L R G L+EA   I+ +P  P+  +W +LL+  R 
Sbjct: 510 KYFNMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEIPFEPDSCVWGALLNSCRL 569

Query: 498 HGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSS 557
             N D+ E AA  L  + P+  G YV++SNIYAA G W +V  +R  M+  G +K+PG S
Sbjct: 570 QNNVDLAEIAAQKLFHLEPENPGTYVLMSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCS 629

Query: 558 SIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAE 617
            I+ +  ++  +  DKSHPQ D+I  K+ E+  +++ +GH P+    L  +E+Q++++  
Sbjct: 630 WIQVKNKVYTLLACDKSHPQIDQITEKMDEISEEMRKSGHRPNLDFALQDVEEQEQEQM- 688

Query: 618 LENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHH 677
           L  HSE+LA+ FGL+N    +P++++KNLR+C DCH+V K +S    REI +RD +RFHH
Sbjct: 689 LWGHSEKLAVVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHH 748

Query: 678 FKNGSCSCKDFW 689
           FK+G CSC DFW
Sbjct: 749 FKDGICSCGDFW 760


>gi|242035229|ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
 gi|241918863|gb|EER92007.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
          Length = 684

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 226/579 (39%), Positives = 341/579 (58%), Gaps = 12/579 (2%)

Query: 120 PDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRV 179
           PD+ T    +   ARLG +   + +    F  G+G D FV S+L+ +Y++ G +    RV
Sbjct: 109 PDSTTFTLALTACARLGDLDAAEAVRVRAFAAGYGRDVFVCSALLHVYSRCGAMGDAIRV 168

Query: 180 FDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFS---------WTCLVDGFS 230
           FD M  KD V+W+ ++ G+V  G    A+ ++  M +  +             C + G +
Sbjct: 169 FDGMPRKDHVAWSTMVAGFVSAGRPVEALGMYSRMREHGVAEDEVVMVGVIQACTLTGNT 228

Query: 231 KCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAG 290
           + G     R + + M   ++V   ++++ Y K G  D A ++F  M  R+ ++WN++I+G
Sbjct: 229 RMGASVHGRFLRHGM-RMDVVIATSLVDMYAKNGHFDVARQVFRMMPYRNAVSWNALISG 287

Query: 291 YELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVD 350
           +  NG   EAL+L   M    + P+   LVSAL A A +  L  G+ +H +I++      
Sbjct: 288 FAQNGHADEALDLFREMSTSGLQPDSGALVSALLACADVGFLKLGKSIHGFILRR-LEFQ 346

Query: 351 GVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCR 410
            +LGT ++ MYSKCGS+ESA  +F  +S + +  W AMI   G HG    AL LF ++  
Sbjct: 347 CILGTAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAMIACCGTHGCGHDALALFQELNE 406

Query: 411 MGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLE 470
            G+KP   TF  +L+A SH+GLV +G+ +F+ MI ++GIEPT +H  C+VD+L R+G +E
Sbjct: 407 TGIKPDHATFASLLSALSHSGLVEEGKFWFDRMITEFGIEPTEKHCVCVVDLLARSGLVE 466

Query: 471 EAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYA 530
           EA   + SM   P   IW++LLSG  N+   ++GE  A  +++  P+ IG   ++SN+YA
Sbjct: 467 EANEMLASMHTEPTIPIWVALLSGCLNNKKLELGETIAKKILESQPEDIGVLALVSNLYA 526

Query: 531 AAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRN 590
           AA +WDKV E+R++MK  G +K PG S IE  G  H FV+ D+SHPQ  EI   +S++  
Sbjct: 527 AAKKWDKVREIRKLMKDSGSKKVPGYSLIEVHGTRHAFVMEDQSHPQHQEILKMISKLSF 586

Query: 591 KLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCN 650
           +++  G+VP T  V   + D+  KE  L  HSERLAIAFGL+N    + + I+KNLRVC 
Sbjct: 587 EMRKMGYVPRTEFVYHDL-DEDVKEQLLSYHSERLAIAFGLLNTSPGTRLVIIKNLRVCG 645

Query: 651 DCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           DCH   K +S I +REI+VRD  RFHHFK+G+CSC D+W
Sbjct: 646 DCHDAIKYISKIVDREIVVRDAKRFHHFKDGACSCGDYW 684



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/315 (28%), Positives = 155/315 (49%), Gaps = 13/315 (4%)

Query: 88  VLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGL 147
           V ++ ++  +V   R  EAL ++  + +  +  D   +  VI+     G  + G  +HG 
Sbjct: 178 VAWSTMVAGFVSAGRPVEALGMYSRMREHGVAEDEVVMVGVIQACTLTGNTRMGASVHGR 237

Query: 148 VFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVA 207
             + G   D  + +SLV MYAK G  D+ R+VF  M  ++ VSWN LI G+ + G  + A
Sbjct: 238 FLRHGMRMDVVIATSLVDMYAKNGHFDVARQVFRMMPYRNAVSWNALISGFAQNGHADEA 297

Query: 208 MKLFDEM------PDRDLFS---WTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMIN 258
           + LF EM      PD          C   GF K GK  I   I  R+  + ++   A+++
Sbjct: 298 LDLFREMSTSGLQPDSGALVSALLACADVGFLKLGK-SIHGFILRRLEFQCILG-TAVLD 355

Query: 259 GYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDAT 318
            Y K G ++SA +LF+ +  RDL+ WN+MIA    +G   +AL L + +    + P+ AT
Sbjct: 356 MYSKCGSLESARKLFNKLSSRDLVLWNAMIACCGTHGCGHDALALFQELNETGIKPDHAT 415

Query: 319 LVSALSAVAGLAVLNKGR-WMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAI 377
             S LSA++   ++ +G+ W    I + G          ++ + ++ G +E A  +  ++
Sbjct: 416 FASLLSALSHSGLVEEGKFWFDRMITEFGIEPTEKHCVCVVDLLARSGLVEEANEMLASM 475

Query: 378 -SKKKVGHWTAMIVG 391
            ++  +  W A++ G
Sbjct: 476 HTEPTIPIWVALLSG 490



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 134/281 (47%), Gaps = 23/281 (8%)

Query: 64  VDPHINNLHY--ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPD 121
           VD +  N H+  AR +F R++ + + V +N LI  +  N  + EAL LF ++    L PD
Sbjct: 254 VDMYAKNGHFDVARQVF-RMMPYRNAVSWNALISGFAQNGHADEALDLFREMSTSGLQPD 312

Query: 122 NFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFD 181
           +  L   +   A +G +K GK IHG + +    F   + ++++ MY+K G ++  R++F+
Sbjct: 313 SGALVSALLACADVGFLKLGKSIHGFILRR-LEFQCILGTAVLDMYSKCGSLESARKLFN 371

Query: 182 AMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKCGKV 235
            +  +DLV WN +I      G    A+ LF E+      PD   F+   L+   S  G V
Sbjct: 372 KLSSRDLVLWNAMIACCGTHGCGHDALALFQELNETGIKPDHATFA--SLLSALSHSGLV 429

Query: 236 EIAREIFYRMPNRNLVSWN-----AMINGYMKAGDVDSACELFDDMEIRDLIT-WNSMIA 289
           E  +  F RM     +         +++   ++G V+ A E+   M     I  W ++++
Sbjct: 430 EEGKFWFDRMITEFGIEPTEKHCVCVVDLLARSGLVEEANEMLASMHTEPTIPIWVALLS 489

Query: 290 GYELNGRFMEALELLETMLIGDVLPNDA---TLVSALSAVA 327
           G  LN + +E  E +   ++ +  P D     LVS L A A
Sbjct: 490 GC-LNNKKLELGETIAKKIL-ESQPEDIGVLALVSNLYAAA 528



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/280 (22%), Positives = 115/280 (41%), Gaps = 36/280 (12%)

Query: 225 LVDGFSKCGKVEIAREIFYRMPNRN--LVSWNAMINGYMKAGDVDSACELFDDMEIRDLI 282
           L   +++ G ++ A       P+    + +WNA++    +AG   +A  +F         
Sbjct: 50  LAAAYARVGALDAAESTLAASPSSRSCIPAWNALLAARSRAGSPGAALRVF--------- 100

Query: 283 TWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYI 342
                                    L     P+  T   AL+A A L  L+    +    
Sbjct: 101 -----------------------RALPSSARPDSTTFTLALTACARLGDLDAAEAVRVRA 137

Query: 343 VKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQAL 402
              G+  D  + + L+ +YS+CG++  A+ VF  + +K    W+ M+ G    G   +AL
Sbjct: 138 FAAGYGRDVFVCSALLHVYSRCGAMGDAIRVFDGMPRKDHVAWSTMVAGFVSAGRPVEAL 197

Query: 403 DLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDI 462
            ++++M   G+    +  +GV+ AC+  G    G       +  +G+   +     LVD+
Sbjct: 198 GMYSRMREHGVAEDEVVMVGVIQACTLTGNTRMGASVHGRFLR-HGMRMDVVIATSLVDM 256

Query: 463 LCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKD 502
             + G+ + A+     MP R N V W +L+SG   +G+ D
Sbjct: 257 YAKNGHFDVARQVFRMMPYR-NAVSWNALISGFAQNGHAD 295


>gi|195611854|gb|ACG27757.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 633

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 239/593 (40%), Positives = 335/593 (56%), Gaps = 47/593 (7%)

Query: 143 QIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKG 202
           +IH    +     DK V   L   YA  G +DL   +     D   V +   I  +  +G
Sbjct: 42  EIHAAAVRASVDQDKAVAFRLQRAYAASGRLDLAVALLRRTPDPTAVFYTSAIHAHSSRG 101

Query: 203 EVEVAMKLFDEM--------PDRDLFSWT-----CLVDGFSKCG---KVEIAREIFYRM- 245
               A+ L  EM        P     S +     CL  G +  G   K+ ++ E +    
Sbjct: 102 LHRAALALLSEMLLSRHGLLPTAHTLSASLPACGCLAVGRALHGYAVKLALSGEPYVATA 161

Query: 246 ----------------------PNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLIT 283
                                 P+ ++VS  AM++ Y K G +D A  LFD +  +DL+ 
Sbjct: 162 LLGMYARAGEAAAARALFDGMRPDPHVVSVTAMLSCYAKMGQLDDARGLFDALPRKDLVC 221

Query: 284 WNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIV 343
           WN+M+ GY  +GR  EAL L   ML   V P++ ++V ALSAVA L     GRW+HS++ 
Sbjct: 222 WNAMMDGYTQHGRPSEALRLFRQMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVA 281

Query: 344 KNG----FVVDGVLGTLLIQMYSKCGSIESALTVFRAIS---KKKVGHWTAMIVGLGMHG 396
             G      ++  +GT L+ MY KCGS+E A+ VFR +     + V  W AMI G  MHG
Sbjct: 282 NGGRRARVRLNARVGTALVDMYYKCGSLEEAVAVFRDLGGGGDRDVVAWNAMINGYAMHG 341

Query: 397 MATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHY 456
            + +AL+ F ++   G+ PT ITFIGVLNACSH+GLV++GR  F  M  +YGI P +EHY
Sbjct: 342 RSREALEAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRALFAAMEEEYGIVPKVEHY 401

Query: 457 GCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAP 516
           GC+VD+L R G +EEA   ++SM  +P+  +W SLL   R H N  +G+  A+ L+    
Sbjct: 402 GCMVDLLGRAGRVEEAFDLVQSMKAKPDAAMWASLLGACRLHKNLALGQRVADYLVGNGL 461

Query: 517 DTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHP 576
              G YV+LSN+YAAAG+W +V  VR MM+  G +K+PG S++E    + EFV GD+SHP
Sbjct: 462 ANSGTYVLLSNMYAAAGKWREVGRVRSMMRASGVQKEPGCSAVEVGRRVVEFVAGDRSHP 521

Query: 577 QTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKS 636
           ++ EI++KL E+ +  +A GHVP T  VL  ++D   KE  L  HSE+LA+AFGLI+   
Sbjct: 522 RSAEIYAKLEEVNSIARARGHVPHTELVLHDLDDAA-KERALAVHSEKLALAFGLISTPP 580

Query: 637 RSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           R+ I+IVKNLR C DCH+V KL+S    R+I+ RD +RFHHF +GSCSC D+W
Sbjct: 581 RTGIKIVKNLRACADCHAVLKLVSEATGRKIVFRDRNRFHHFVDGSCSCGDYW 633



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 114/450 (25%), Positives = 186/450 (41%), Gaps = 88/450 (19%)

Query: 27  ILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPS 86
           +L   ++     ++HA +V+ ++     ++ RL   Y       L  A ++  R    P+
Sbjct: 30  LLAGCASASRAAEIHAAAVRASVDQDKAVAFRLQRAYAAS--GRLDLAVALLRRT-PDPT 86

Query: 87  LVLYNLLIKCYVFNQRSHEALTLFCD-LLDRF-LLPDNFTLPCVIKGAARLGAIKEGKQI 144
            V Y   I  +        AL L  + LL R  LLP   TL   +      G +  G+ +
Sbjct: 87  AVFYTSAIHAHSSRGLHRAALALLSEMLLSRHGLLPTAHTLSASLPA---CGCLAVGRAL 143

Query: 145 HGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAM-DDKDLVSWNCLIDGYVKKGE 203
           HG   KL    + +V ++L+ MYA+ GE    R +FD M  D  +VS   ++  Y K G+
Sbjct: 144 HGYAVKLALSGEPYVATALLGMYARAGEAAAARALFDGMRPDPHVVSVTAMLSCYAKMGQ 203

Query: 204 VEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM------PN---------- 247
           ++ A  LFD +P +DL  W  ++DG+++ G+   A  +F +M      P+          
Sbjct: 204 LDDARGLFDALPRKDLVCWNAMMDGYTQHGRPSEALRLFRQMLRSGVEPDEVSVVLALSA 263

Query: 248 ----------------------RNLVSWN-----AMINGYMKAGDVDSACELFDDM---E 277
                                 R  V  N     A+++ Y K G ++ A  +F D+    
Sbjct: 264 VAQLGTAESGRWLHSFVANGGRRARVRLNARVGTALVDMYYKCGSLEEAVAVFRDLGGGG 323

Query: 278 IRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRW 337
            RD++ WN+MI GY ++GR  EALE    +    + P D T +  L+A +   ++++GR 
Sbjct: 324 DRDVVAWNAMINGYAMHGRSREALEAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGR- 382

Query: 338 MHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGM 397
                             L   M  + G +             KV H+  M+  LG  G 
Sbjct: 383 -----------------ALFAAMEEEYGIV------------PKVEHYGCMVDLLGRAGR 413

Query: 398 ATQALDLFNKMCRMGMKPTAITFIGVLNAC 427
             +A DL      M  KP A  +  +L AC
Sbjct: 414 VEEAFDLVQS---MKAKPDAAMWASLLGAC 440



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 92/380 (24%), Positives = 162/380 (42%), Gaps = 64/380 (16%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYV-----------------DPHI------------ 68
           + LH  +VK  L     +++ LL +Y                  DPH+            
Sbjct: 141 RALHGYAVKLALSGEPYVATALLGMYARAGEAAAARALFDGMRPDPHVVSVTAMLSCYAK 200

Query: 69  -NNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPC 127
              L  AR +FD  L    LV +N ++  Y  + R  EAL LF  +L   + PD  ++  
Sbjct: 201 MGQLDDARGLFD-ALPRKDLVCWNAMMDGYTQHGRPSEALRLFRQMLRSGVEPDEVSVVL 259

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLG----FGFDKFVLSSLVSMYAKFGEIDLGRRVFDAM 183
            +   A+LG  + G+ +H  V   G       +  V ++LV MY K G ++    VF  +
Sbjct: 260 ALSAVAQLGTAESGRWLHSFVANGGRRARVRLNARVGTALVDMYYKCGSLEEAVAVFRDL 319

Query: 184 ---DDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLF----SWTCLVDGFSKCGKVE 236
               D+D+V+WN +I+GY   G    A++ F ++  + L+    ++  +++  S  G V+
Sbjct: 320 GGGGDRDVVAWNAMINGYAMHGRSREALEAFGQLRAQGLWPTDITFIGVLNACSHSGLVD 379

Query: 237 IAREIFYRMPNR-----NLVSWNAMINGYMKAGDVDSACELFDDMEIR-DLITWNSMIAG 290
             R +F  M         +  +  M++   +AG V+ A +L   M+ + D   W S++  
Sbjct: 380 EGRALFAAMEEEYGIVPKVEHYGCMVDLLGRAGRVEEAFDLVQSMKAKPDAAMWASLLGA 439

Query: 291 YELNGRFMEALELLETMLIGDVLPNDAT--LVSALSAVAGLAVLNKGRWMHSYIVKNGFV 348
             L+ + +   + +   L+G+ L N  T  L+S + A A       G+W     V++   
Sbjct: 440 CRLH-KNLALGQRVADYLVGNGLANSGTYVLLSNMYAAA-------GKWREVGRVRSMMR 491

Query: 349 VDGVLGTLLIQMYSKCGSIE 368
             GV      Q    C ++E
Sbjct: 492 ASGV------QKEPGCSAVE 505


>gi|79329389|ref|NP_001031987.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171830|sp|Q9FND7.1|PP410_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g40405
 gi|10178152|dbj|BAB11597.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007161|gb|AED94544.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 211/474 (44%), Positives = 304/474 (64%), Gaps = 1/474 (0%)

Query: 216 DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDD 275
           D D    T L+  +++ G ++   ++F  +P  + V   AM+    + GDV  A +LF+ 
Sbjct: 140 DNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDVVFARKLFEG 199

Query: 276 MEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKG 335
           M  RD I WN+MI+GY   G   EAL +   M +  V  N   ++S LSA   L  L++G
Sbjct: 200 MPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQG 259

Query: 336 RWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMH 395
           RW HSYI +N   +   L T L+ +Y+KCG +E A+ VF  + +K V  W++ + GL M+
Sbjct: 260 RWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMN 319

Query: 396 GMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEH 455
           G   + L+LF+ M + G+ P A+TF+ VL  CS  G V++G+R+F+ M N++GIEP +EH
Sbjct: 320 GFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEH 379

Query: 456 YGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVA 515
           YGCLVD+  R G LE+A S I+ MPM+P+  +W SLL  +R + N ++G  A+  ++++ 
Sbjct: 380 YGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLASKKMLELE 439

Query: 516 PDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSH 575
               G YV+LSNIYA +  WD VS VR+ MK +G RK PG S +E  G +HEF VGDKSH
Sbjct: 440 TANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSH 499

Query: 576 PQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVK 635
           P+  +I +   ++  +L+ AG+  DTT V+  I D++EKE  L  HSE+ AIAFG++++K
Sbjct: 500 PKYTQIDAVWKDISRRLRLAGYKADTTPVMFDI-DEEEKEDALCLHSEKAAIAFGIMSLK 558

Query: 636 SRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
              PIRIVKNLRVC DCH V+ ++S I+NREIIVRD +RFHHFK+G CSC  FW
Sbjct: 559 EDVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDGHCSCNGFW 612



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/402 (25%), Positives = 189/402 (47%), Gaps = 48/402 (11%)

Query: 33  THKETQQLHA-LSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYN 91
           T KE +Q+HA L V   L     +   + ++ +  H   L YA  I DR  + P+L   N
Sbjct: 18  TFKEVRQIHAKLYVDGTLKDDHLVGHFVKAVALSDH-KYLDYANQILDRS-EKPTLFALN 75

Query: 92  LLIKCYVFNQRSHEALTLFCDLLDRF--LLPDNFTLPCVIKGAARLGAIKEGKQIHGLVF 149
            +I+ +  +    ++   +  +L     L PDN+T+  +++    L   + G Q+HG+  
Sbjct: 76  SMIRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACTGLRMRETGLQVHGMTI 135

Query: 150 KLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMK 209
           + GF  D  V + L+S+YA+ G +D   +VF+++   D V    ++    + G+V  A K
Sbjct: 136 RRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDVVFARK 195

Query: 210 LFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMP----------------------- 246
           LF+ MP+RD  +W  ++ G+++ G+   A  +F+ M                        
Sbjct: 196 LFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGA 255

Query: 247 -----------NRNLVS-----WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAG 290
                       RN +         +++ Y K GD++ A E+F  ME +++ TW+S + G
Sbjct: 256 LDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNG 315

Query: 291 YELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVD 350
             +NG   + LEL   M    V PN  T VS L   + +  +++G+  H   ++N F ++
Sbjct: 316 LAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQ-RHFDSMRNEFGIE 374

Query: 351 GVLG--TLLIQMYSKCGSIESALTVFRAIS-KKKVGHWTAMI 389
             L     L+ +Y++ G +E A+++ + +  K     W++++
Sbjct: 375 PQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLL 416


>gi|147811587|emb|CAN70294.1| hypothetical protein VITISV_005974 [Vitis vinifera]
          Length = 562

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 224/563 (39%), Positives = 341/563 (60%), Gaps = 12/563 (2%)

Query: 138 IKEGKQIHGLVFKLGFGFDKFVLSSLVSMYA--KFGEIDLGRRVFDAMDDKDLVSWNCLI 195
           ++E KQ H  + K G   D F  S+LV+  A   +G +D    +F  MD+     +N ++
Sbjct: 1   MEEFKQSHARILKXGLFXDSFCASNLVATCALSDWGSMDYACSIFRQMDEPGSFZFNTMM 60

Query: 196 DGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLV 251
            G+VK    E A+  + EM +R    D F++  L+   ++   VE   ++   +    L 
Sbjct: 61  RGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLE 120

Query: 252 S----WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETM 307
           +     N++I+ Y K G++   C +F+ M  R + +W+++I  +   G + + L LL  M
Sbjct: 121 NDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSDCLRLLGDM 180

Query: 308 L-IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGS 366
              G     ++ LVS LSA   L  L+ GR +H ++++N   ++ ++ T LI+MY KCG 
Sbjct: 181 SNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCGX 240

Query: 367 IESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNA 426
           +   + +F+ ++KK    ++ MI GL MHG   + L +F +M   G++P  I ++GVLNA
Sbjct: 241 LYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLNA 300

Query: 427 CSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFV 486
           CSHAGLV +G + FN M  ++GIEPTI+HYGC+VD++ R G ++EA   I+SMPM PN V
Sbjct: 301 CSHAGLVQEGLQCFNRMKLEHGIEPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPNDV 360

Query: 487 IWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMK 546
           +W SLLS ++ H N   GE AA  L K+       YVVLSN+YA A +W+ V+  R  M 
Sbjct: 361 LWRSLLSASKVHNNLQAGEIAAKQLFKLDSQKASDYVVLSNMYAQAQRWEDVARTRTNMF 420

Query: 547 KRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLL 606
            +G  + PG S +E +  +H FV  D  HPQ++ ++  L +M  +LK  G+ PDTTQV L
Sbjct: 421 SKGLSQRPGFSLVEVKRKMHRFVSQDAGHPQSESVYEMLYQMEWQLKFEGYXPDTTQV-L 479

Query: 607 CIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNRE 666
           C  D++EK+  L  HS++LAIA+ LI+    SP+RIV+NLR+CNDCH+ TKL+S I++RE
Sbjct: 480 CDVDEEEKKQRLSGHSQKLAIAYALIHTSQGSPVRIVRNLRMCNDCHTYTKLISIIFDRE 539

Query: 667 IIVRDNSRFHHFKNGSCSCKDFW 689
           I VRD  RFHHFK+G+CSC+D+W
Sbjct: 540 ITVRDRHRFHHFKDGACSCRDYW 562



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 95/353 (26%), Positives = 180/353 (50%), Gaps = 11/353 (3%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           +E +Q HA  +K  L   S  +S L++        ++ YA SIF R +  P    +N ++
Sbjct: 2   EEFKQSHARILKXGLFXDSFCASNLVATCALSDWGSMDYACSIF-RQMDEPGSFZFNTMM 60

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
           + +V +  + EAL  + ++ +R + PDNFT P ++K  ARL A++EG Q+H  + KLG  
Sbjct: 61  RGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLE 120

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
            D FV +SL+SMY K GEI +   VF+ M+++ + SW+ LI  +   G     ++L  +M
Sbjct: 121 NDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSDCLRLLGDM 180

Query: 215 PDRDLF--SWTCLVDGFSKC---GKVEIAREI----FYRMPNRNLVSWNAMINGYMKAGD 265
            +   +    + LV   S C   G +++ R +       +   N++   ++I  Y+K G 
Sbjct: 181 SNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCGX 240

Query: 266 VDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSA 325
           +     LF  M  ++ ++++ MI+G  ++G   E L +   ML   + P+D   V  L+A
Sbjct: 241 LYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLNA 300

Query: 326 VAGLAVLNKG-RWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAI 377
            +   ++ +G +  +   +++G          ++ +  + G I+ AL + +++
Sbjct: 301 CSHAGLVQEGLQCFNRMKLEHGIEPTIQHYGCMVDLMGRAGKIDEALELIKSM 353


>gi|359483597|ref|XP_002272690.2| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial [Vitis vinifera]
          Length = 676

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 244/686 (35%), Positives = 371/686 (54%), Gaps = 70/686 (10%)

Query: 51  YHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLF 110
           Y S I+  L +  +D        AR++FD++   P + LY ++I  Y  N R   AL LF
Sbjct: 14  YQSMITDHLRNQRIDE-------ARTVFDKV-SFPDVYLYTMMITGYARNYRFDHALQLF 65

Query: 111 CDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSM---- 166
            ++     + D  +   +IKG      +   +++          FD+    S+VS     
Sbjct: 66  YEMP----VKDVVSWNSMIKGCFDCADLTMARKL----------FDEMPERSVVSWTTMI 111

Query: 167 --YAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTC 224
             + +FG+I++   +F  M  +D+ +WN +I GY   G VE  ++LF EMP R++ SWT 
Sbjct: 112 NGFLQFGKIEVAEGLFYKMPFRDIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTS 171

Query: 225 LVDGFSKCGKVEIAREIFYRM--------PNRNLV------------------------- 251
           ++ G  + G+ E A  +F +M        P  +                           
Sbjct: 172 MIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANASALYQGVQIHAHVFK 231

Query: 252 ---SWNAMING-----YMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALEL 303
              S++A I+      Y     ++ +  +F      +++ W +++ GY LN +  +AL++
Sbjct: 232 LGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKV 291

Query: 304 LETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSK 363
              M+   VLPN ++  SAL++  GL  L+ GR +H+  VK G   D  +G  LI MY +
Sbjct: 292 FGEMMREGVLPNQSSFTSALNSCCGLEALDWGREIHTAAVKLGLETDVFVGNSLIVMYYR 351

Query: 364 CGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGV 423
           CG++   + +F+ ISKK +  W ++IVG   HG    AL  FN+M R  ++P  ITF G+
Sbjct: 352 CGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGL 411

Query: 424 LNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRP 483
           L+ACSH+G+   GR  F     +   E  ++HY C+VDIL R+G LEEA+  I +MP++ 
Sbjct: 412 LSACSHSGMSQKGRCLFKYFSENKSAEVKLDHYACMVDILGRSGKLEEAEELIRNMPVKA 471

Query: 484 NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVRE 543
           N ++W+ LLS    H   ++ E AA  +I + P     YV+LSN+YA+A +W  VS +R 
Sbjct: 472 NSMVWLVLLSACTMHSKLEVAERAAKCIIDLEPHCSSAYVLLSNLYASASRWSDVSRIRR 531

Query: 544 MMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQ 603
            MK+RG  K PG S I  +G  +EF+ GD+SHP +D I+ KL  +  KLK  G+VPD   
Sbjct: 532 EMKQRGITKQPGRSWITIKGWRNEFLSGDRSHPSSDRIYQKLEWLGGKLKELGYVPDQRF 591

Query: 604 VLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIY 663
            L  +ED+ +KE  L  HSERLAI FGLI+    S I ++KNLRVC DCHS  KL++ I 
Sbjct: 592 ALHDVEDE-QKEVMLSYHSERLAIGFGLISTVEGSTITVMKNLRVCGDCHSAIKLIAKIV 650

Query: 664 NREIIVRDNSRFHHFKNGSCSCKDFW 689
            R+IIVRD++RFHHF +G CSC D+W
Sbjct: 651 RRKIIVRDSTRFHHFMDGRCSCGDYW 676



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 115/400 (28%), Positives = 187/400 (46%), Gaps = 37/400 (9%)

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
           F  F   S+++ + +   ID  R VFD +   D+  +  +I GY +    + A++LF EM
Sbjct: 9   FCTFSYQSMITDHLRNQRIDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEM 68

Query: 215 PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFD 274
           P +D+ SW  ++ G   C  + +AR++F  MP R++VSW  MING+++ G ++ A  LF 
Sbjct: 69  PVKDVVSWNSMIKGCFDCADLTMARKLFDEMPERSVVSWTTMINGFLQFGKIEVAEGLFY 128

Query: 275 DMEIRDLITWNSMIAGYELNGRFMEALELLETM----------LIG-------------- 310
            M  RD+  WNSMI GY  NGR  + L L + M          +IG              
Sbjct: 129 KMPFRDIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGL 188

Query: 311 ---------DVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMY 361
                    +V P  +T    ++A A  + L +G  +H+++ K G+  D  +   LI  Y
Sbjct: 189 FRQMMGCGVEVKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFY 248

Query: 362 SKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFI 421
           + C  +E +L VF       V  WTA++ G G++     AL +F +M R G+ P   +F 
Sbjct: 249 ANCKQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFT 308

Query: 422 GVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPM 481
             LN+C     ++ GR      +   G+E  +     L+ +  R G L +     + +  
Sbjct: 309 SALNSCCGLEALDWGREIHTAAVK-LGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRIS- 366

Query: 482 RPNFVIWMSLLSGARNHGNKDIGEYAANNLIK--VAPDTI 519
           + N V W S++ G   HG         N +++  V PD I
Sbjct: 367 KKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEI 406


>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 617

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 229/587 (39%), Positives = 357/587 (60%), Gaps = 14/587 (2%)

Query: 20  PSRLHW-NILKFSSTHKETQQLHALSVKT--NLIYHSGISSRLLSLYVDPHINNLHYARS 76
           P +L + + L+   + K  +Q+HA  +KT  +      IS+RL +L       +  YA S
Sbjct: 20  PHKLSFLSTLQTCKSIKGLKQIHASIIKTMPSPDAQLTISTRLSALCAQSLPIDPRYALS 79

Query: 77  IFDRILQHPSLVLYNLLIK-CYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARL 135
           +  + L+ P+L LYN +I+     N  S E L ++  +L + ++PDN+T+P V+K  A  
Sbjct: 80  LLAQ-LRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAES 138

Query: 136 GAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLI 195
            A++EG+++HG   K+G   D +V ++L+ MYA    I   R+VFD    +DLVSW  +I
Sbjct: 139 RAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMI 198

Query: 196 DGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREI---FYRMPNR 248
            GYVK G     + LF EM   +L     +   ++   ++ G + + R++     R  N 
Sbjct: 199 QGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNSNV 258

Query: 249 NLVSW--NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLET 306
           NL  +  NA+++ Y+K GD + A ++F +M ++++++WNSMI+G    G+F E+L +   
Sbjct: 259 NLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRK 318

Query: 307 MLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGS 366
           M    V P+D TLV+ L++ A L VL  G+W+H+Y+ +N    DG +G  L+ MY+KCGS
Sbjct: 319 MQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGS 378

Query: 367 IESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNA 426
           I+ A  VF+A+++K V  +TAMIVGL MHG   +ALDLF++M +MG++P  +TF+GVL A
Sbjct: 379 IDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTA 438

Query: 427 CSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFV 486
           CSH GLV +GR+YF  M   Y + P +EHYGC+VD+L R G + EA+  I +MP+ P+  
Sbjct: 439 CSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAF 498

Query: 487 IWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMK 546
           +  +LL   + HG  ++GE     + K+ P   G YV++SNIY++A +W    ++R+ MK
Sbjct: 499 VLGALLGACKIHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKLRKTMK 558

Query: 547 KRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLK 593
           +R   K PG SSIE  GV+HEF  GDKSHP+  EI+  L E+ + LK
Sbjct: 559 ERNLEKTPGCSSIELDGVIHEFQKGDKSHPKIKEIYKLLDEIMSHLK 605


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 242/671 (36%), Positives = 376/671 (56%), Gaps = 44/671 (6%)

Query: 59  LLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL-DRF 117
           LLS Y    +  L   + +FD +  H  +V +N L+  Y  N    E++ ++  +L D  
Sbjct: 77  LLSAY--SKLGYLQDMQRVFDSMPNH-DVVSWNSLLSGYAGNGLISESVRVYNMMLKDGS 133

Query: 118 LLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGR 177
           +  +  T   ++  ++  G +  G+QIHG +FK G+    FV S LV MYAK G I+   
Sbjct: 134 VNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDAN 193

Query: 178 RVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEI 237
           R+F+ + +K++V +N +I G ++   +  A +LFD MP++D  SWT ++ G ++ G  + 
Sbjct: 194 RIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKE 253

Query: 238 AREIFYRMP---------------------------------------NRNLVSWNAMIN 258
           A + F  M                                          N+   +A+++
Sbjct: 254 AVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLD 313

Query: 259 GYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDAT 318
            Y K  +V  A  +F  M  +++I+W +M+ GY  NG   EA+ +   M   ++ P+D T
Sbjct: 314 MYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFT 373

Query: 319 LVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS 378
           L S +S+ A LA L +G   H   + +G +    +   LI +Y KCGS+E A  +F  + 
Sbjct: 374 LGSVISSCANLASLEEGAQFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMK 433

Query: 379 KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR 438
            +    WTA++ G    G A + + LF  M   G+ P  +TF+GVL+ACS AGLV  G  
Sbjct: 434 IRDEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDGVTFVGVLSACSRAGLVEKGYH 493

Query: 439 YFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNH 498
           YF  M+ ++ I P  +HY C++D+L R G LEEAK+ I  MP  P+ + W +LLS  R +
Sbjct: 494 YFECMVKEHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQMPFSPDAIGWATLLSSCRLN 553

Query: 499 GNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSS 558
           GN +IG++AA +L K+ P     Y++LS+IYAA G+WD V+++R+ M++ G +K+PG S 
Sbjct: 554 GNLEIGKWAAESLHKLEPQNPASYILLSSIYAAKGKWDDVAKLRKGMREMGVKKEPGHSW 613

Query: 559 IEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAEL 618
           I+++  +H F   D+S P +D+I++KL  +  K+   G+VPD + VL  +E + EK   L
Sbjct: 614 IKYKNKVHIFSADDRSSPFSDQIYAKLESLYLKMIEEGYVPDMSFVLHDVE-KSEKIKML 672

Query: 619 ENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHF 678
            +HSE+LAIAFGL+ +     IR+VKNLRVC DCH+ TK +S I  REI+VRD  RFH F
Sbjct: 673 NHHSEKLAIAFGLLFIPDGLQIRVVKNLRVCGDCHNATKYISRITQREILVRDAVRFHLF 732

Query: 679 KNGSCSCKDFW 689
           K+G CSC DFW
Sbjct: 733 KDGVCSCGDFW 743



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 124/460 (26%), Positives = 219/460 (47%), Gaps = 48/460 (10%)

Query: 109 LFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYA 168
           L C ++     P+ F    +I    +LG +K  + +   + +       F  ++L+S Y+
Sbjct: 27  LHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIPQPNL----FSWNTLLSAYS 82

Query: 169 KFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM-------------- 214
           K G +   +RVFD+M + D+VSWN L+ GY   G +  ++++++ M              
Sbjct: 83  KLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNLNRITFS 142

Query: 215 ------PDRD--------------------LFSWTCLVDGFSKCGKVEIAREIFYRMPNR 248
                  +R                     LF  + LVD ++K G +  A  IF  +P +
Sbjct: 143 TMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEK 202

Query: 249 NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETML 308
           N+V +N MI G ++   +  A +LFD+M  +D I+W ++I G   NG F EA++  + M 
Sbjct: 203 NIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMG 262

Query: 309 IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIE 368
           I     +  T  S L+A  G   L++G+ +H+YI++  +  +  +G+ L+ MY KC +++
Sbjct: 263 IEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVK 322

Query: 369 SALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACS 428
            A  VFR +  K V  WTAM+VG G +G + +A+ +F  M R  + P   T   V+++C+
Sbjct: 323 YAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCA 382

Query: 429 HAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIW 488
           +   + +G ++    +   G+   +     L+ +  + G LE A      M +R   V W
Sbjct: 383 NLASLEEGAQFHGQALAS-GLICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDE-VSW 440

Query: 489 MSLLSGARNHG--NKDIGEYAANNLIKVAPDTIGCYVVLS 526
            +L+SG    G  N+ I  +       + PD +    VLS
Sbjct: 441 TALVSGYAQFGKANETISLFETMLAHGIVPDGVTFVGVLS 480



 Score = 50.1 bits (118), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 53/246 (21%), Positives = 99/246 (40%), Gaps = 37/246 (15%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           +E  Q H  ++ + LI    +S+ L++LY      +L +A  +F   ++    V +  L+
Sbjct: 388 EEGAQFHGQALASGLICFVTVSNALITLY--GKCGSLEHAHQLFHE-MKIRDEVSWTALV 444

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
             Y    +++E ++LF  +L   ++PD  T   V+   +R G +++G             
Sbjct: 445 SGYAQFGKANETISLFETMLAHGIVPDGVTFVGVLSACSRAGLVEKG------------- 491

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
                       Y  F  +    R+    D      + C+ID   + G +E A    ++M
Sbjct: 492 ------------YHYFECMVKEHRITPIPD-----HYTCMIDLLSRAGRLEEAKNFINQM 534

Query: 215 P-DRDLFSWTCLVDGFSKCGKVEI---AREIFYRMPNRNLVSWNAMINGYMKAGDVDSAC 270
           P   D   W  L+      G +EI   A E  +++  +N  S+  + + Y   G  D   
Sbjct: 535 PFSPDAIGWATLLSSCRLNGNLEIGKWAAESLHKLEPQNPASYILLSSIYAAKGKWDDVA 594

Query: 271 ELFDDM 276
           +L   M
Sbjct: 595 KLRKGM 600


>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
 gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/539 (40%), Positives = 331/539 (61%), Gaps = 15/539 (2%)

Query: 163 LVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSW 222
           LVS Y + G I   R+VFD M ++++VSW  +I GYV++G +E A  LF  MP+R++ SW
Sbjct: 31  LVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGYVQEGLIEEAELLFWRMPERNVVSW 90

Query: 223 TCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLI 282
           T ++ G  + G+V+ AR++F  MP +++V+   MI+G    G +  A E+FD+M  R+++
Sbjct: 91  TVMLGGLIEDGRVDEARQLFDMMPVKDVVASTNMIDGLCSEGRLIEAREIFDEMPQRNVV 150

Query: 283 TWNSMIAG-------------YELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGL 329
            W SMI+G             YE  G  +EAL L   M    V P+  +++S LS    L
Sbjct: 151 AWTSMISGEKDDGTWSTMIKIYERKGFELEALALFSLMQREGVRPSFPSVISVLSVCGSL 210

Query: 330 AVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMI 389
           A L+ GR +HS +V++ F +D  + ++LI MY KCG + +A  VF   S K +  W ++I
Sbjct: 211 ASLDHGRQVHSQLVRSQFDIDIYVSSVLITMYIKCGDLVTAKRVFDRFSSKDIVMWNSII 270

Query: 390 VGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGI 449
            G   HG   +AL++F+ M    + P  ITFIGVL+ACS+ G V +G   F  M + Y +
Sbjct: 271 AGYAQHGFGEKALEVFHDMFSSSIAPDEITFIGVLSACSYTGKVKEGLEIFESMKSKYQV 330

Query: 450 EPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAAN 509
           +P  EHY C+VD+L R G L EA + IE+MP+  + ++W +LL   R H N D+ E AA 
Sbjct: 331 DPKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLGACRTHKNLDLAEIAAK 390

Query: 510 NLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFV 569
            L+++ P+  G Y++LSN+Y++  +W  V E+R+ M+ +  RK PG S IE    +H F 
Sbjct: 391 KLLQLEPNNAGPYILLSNLYSSQSRWKDVVELRKTMRAKNLRKSPGCSWIEVDKKVHIFS 450

Query: 570 -VGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIA 628
             G  SHP+ + I  KL ++   L+ AG+ PD + V+  + D++EK   L +HSE+LA+A
Sbjct: 451 GGGSTSHPEHEMILKKLGKLGALLREAGYCPDGSFVMHDV-DEEEKVHSLRDHSEKLAVA 509

Query: 629 FGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKD 687
           +GL+ V    PIR++KNLRVC D HS  KL++ +  REII+RD +RFHHFK+G CSC D
Sbjct: 510 YGLLKVPEGMPIRVMKNLRVCGDSHSTIKLIAQVTGREIILRDTNRFHHFKDGLCSCSD 568



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 101/361 (27%), Positives = 175/361 (48%), Gaps = 34/361 (9%)

Query: 197 GYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAM 256
           GY +      A KLFD+MP+ +  SW  LV G+ + G +  AR++F +MP RN+VSW AM
Sbjct: 3   GYFQNKRPREARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPERNVVSWTAM 62

Query: 257 INGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPND 316
           I GY++ G ++ A  LF  M  R++++W  M+ G   +GR  EA +L + M + DV    
Sbjct: 63  IRGYVQEGLIEEAELLFWRMPERNVVSWTVMLGGLIEDGRVDEARQLFDMMPVKDV---- 118

Query: 317 ATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLG-TLLIQMYSKCGSIESALTVFR 375
              V++ + + GL   ++GR + +  + +      V+  T +I                 
Sbjct: 119 ---VASTNMIDGLC--SEGRLIEAREIFDEMPQRNVVAWTSMIS---------------- 157

Query: 376 AISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVND 435
              +K  G W+ MI      G   +AL LF+ M R G++P+  + I VL+ C     ++ 
Sbjct: 158 --GEKDDGTWSTMIKIYERKGFELEALALFSLMQREGVRPSFPSVISVLSVCGSLASLDH 215

Query: 436 GRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGA 495
           GR+  + ++     +  I     L+ +  + G L  AK   +    + + V+W S+++G 
Sbjct: 216 GRQVHSQLVRSQ-FDIDIYVSSVLITMYIKCGDLVTAKRVFDRFSSK-DIVMWNSIIAGY 273

Query: 496 RNHGNKDIGEYAANNLI--KVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKD 553
             HG  +      +++    +APD I    VLS   +  G+  +  E+ E MK + ++ D
Sbjct: 274 AQHGFGEKALEVFHDMFSSSIAPDEITFIGVLSAC-SYTGKVKEGLEIFESMKSK-YQVD 331

Query: 554 P 554
           P
Sbjct: 332 P 332



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 113/241 (46%), Gaps = 26/241 (10%)

Query: 74  ARSIFDRILQHPSLV------------LYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPD 121
           AR IFD + Q   +              ++ +IK Y       EAL LF  +    + P 
Sbjct: 137 AREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEALALFSLMQREGVRPS 196

Query: 122 NFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFD 181
             ++  V+     L ++  G+Q+H  + +  F  D +V S L++MY K G++   +RVFD
Sbjct: 197 FPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVLITMYIKCGDLVTAKRVFD 256

Query: 182 AMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKCGKV 235
               KD+V WN +I GY + G  E A+++F +M      PD   F    ++   S  GKV
Sbjct: 257 RFSSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAPDEITF--IGVLSACSYTGKV 314

Query: 236 EIAREIFYRMPNRNLVS-----WNAMINGYMKAGDVDSACELFDDMEIR-DLITWNSMIA 289
           +   EIF  M ++  V      +  M++   +AG ++ A  L ++M +  D I W +++ 
Sbjct: 315 KEGLEIFESMKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLG 374

Query: 290 G 290
            
Sbjct: 375 A 375



 Score = 92.4 bits (228), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 92/419 (21%), Positives = 178/419 (42%), Gaps = 79/419 (18%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           +E ++L     +TN I  +G    L+S YV   +  +  AR +FD++ +  ++V +  +I
Sbjct: 11  REARKLFDKMPETNTISWNG----LVSGYVQNGM--ISEARKVFDKMPER-NVVSWTAMI 63

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
           + YV      EA  LF  + +R ++    +   ++ G    G + E +Q+    F +   
Sbjct: 64  RGYVQEGLIEEAELLFWRMPERNVV----SWTVMLGGLIEDGRVDEARQL----FDMMPV 115

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFD-- 212
            D    ++++      G +   R +FD M  +++V+W  +I G    G     +K+++  
Sbjct: 116 KDVVASTNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERK 175

Query: 213 --EMPDRDLF----------SWTCLVDGFSKCGKV-------EIAREIFYRMPNRNLVSW 253
             E+    LF          S+  ++   S CG +       ++  ++     + ++   
Sbjct: 176 GFELEALALFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVS 235

Query: 254 NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL 313
           + +I  Y+K GD+ +A  +FD    +D++ WNS+IAGY  +G   +ALE+   M    + 
Sbjct: 236 SVLITMYIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIA 295

Query: 314 PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTV 373
           P++ T +  LSA                                    S  G ++  L +
Sbjct: 296 PDEITFIGVLSAC-----------------------------------SYTGKVKEGLEI 320

Query: 374 FRAISKK-----KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNAC 427
           F ++  K     K  H+  M+  LG  G   +A++L      M ++  AI +  +L AC
Sbjct: 321 FESMKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNLIEN---MPVEADAIVWGALLGAC 376


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 229/617 (37%), Positives = 358/617 (58%), Gaps = 10/617 (1%)

Query: 82  LQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEG 141
           + H  +V +N +I          +A+ L   + +  + P++ T+  V+       A+  G
Sbjct: 170 MSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHG 229

Query: 142 KQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKK 201
           K +HG   +  F     V + L+ MYAK   +   R++FD M  ++ VSW+ +I GYV  
Sbjct: 230 KALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXS 289

Query: 202 GEVEVAMKLFDEMPDRDLFSWTCLVDG--FSKCGKV-EIARE------IFYRMPNRNLVS 252
             ++ A++LFD+M  +D    T +  G     C K+ +++R       I       +++ 
Sbjct: 290 DCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILL 349

Query: 253 WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDV 312
            N +++ Y K G +D A   FD M  +D ++++++++G   NG    AL +   M +  +
Sbjct: 350 GNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGI 409

Query: 313 LPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALT 372
            P+  T++  L A + LA L  G   H Y++  GF  D ++   LI MYSKCG I  A  
Sbjct: 410 DPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFARE 469

Query: 373 VFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGL 432
           VF  + +  +  W AMI+G G+HG+  +AL LF+ +  +G+KP  ITFI +L++CSH+GL
Sbjct: 470 VFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGL 529

Query: 433 VNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLL 492
           V +GR +F+ M  D+ I P +EH  C+VDIL R G ++EA   I +MP  P+  IW +LL
Sbjct: 530 VMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALL 589

Query: 493 SGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRK 552
           S  R H N ++GE  +  +  + P++ G +V+LSNIY+AAG+WD  + +R   K  G +K
Sbjct: 590 SACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKK 649

Query: 553 DPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQK 612
            PG S IE  G++H FV GD+SH Q  +I+ KL E+  ++K  G+  + + V   +E++ 
Sbjct: 650 IPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQAECSFVFQDVEEE- 708

Query: 613 EKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDN 672
           EKE  L  HSE+LAIAFG++N+K+  PI + KNLRVC DCH+  K ++ I  REI VRD 
Sbjct: 709 EKEQILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCGDCHAAIKFMTVITKREITVRDA 768

Query: 673 SRFHHFKNGSCSCKDFW 689
           +RFHHFKNG+C+C DFW
Sbjct: 769 NRFHHFKNGTCNCGDFW 785



 Score =  198 bits (504), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 153/539 (28%), Positives = 251/539 (46%), Gaps = 78/539 (14%)

Query: 31  SSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLY 90
           S +  E +++H   +K      S +  +L  LY+    N +  AR +FD I  +PS++L+
Sbjct: 21  SKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLS--CNQVVLARRLFDEI-PNPSVILW 77

Query: 91  NLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFK 150
           N +I+ Y +N     A+ L+  +L   + P+ +T P V+K  + L AI++G +IH     
Sbjct: 78  NQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKM 137

Query: 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
            G   D FV ++LV  YAK G +   +R+F +M  +D+V+WN +I G    G  + A++L
Sbjct: 138 FGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQL 197

Query: 211 FDEMP---------------------------------------DRDLFSWTCLVDGFSK 231
             +M                                        D  +   T L+D ++K
Sbjct: 198 IMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAK 257

Query: 232 CGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGY 291
           C  +  AR+IF  M  RN VSW+AMI GY+ +  +  A ELFD M ++D +         
Sbjct: 258 CQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMD-------- 309

Query: 292 ELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDG 351
                                 P   TL S L A A L  L++GR +H YI+K G V+D 
Sbjct: 310 ----------------------PTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDI 347

Query: 352 VLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRM 411
           +LG  L+ MY+KCG I+ A+  F  ++ K    ++A++ G   +G A  AL +F  M   
Sbjct: 348 LLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLS 407

Query: 412 GMKPTAITFIGVLNACSHAGLVNDGR-RYFNMMINDYGIEPTIEHYGCLVDILCRTGYLE 470
           G+ P   T +GVL ACSH   +  G   +  +++  +  +  I     L+D+  + G + 
Sbjct: 408 GIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLI--CNALIDMYSKCGKIS 465

Query: 471 EAKSTIESMPMRPNFVIWMSLLSGARNH--GNKDIGEYAANNLIKVAPDTIGCYVVLSN 527
            A+     M  R + V W +++ G   H  G + +G +     + + PD I    +LS+
Sbjct: 466 FAREVFNRMD-RHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSS 523


>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 226/564 (40%), Positives = 340/564 (60%), Gaps = 22/564 (3%)

Query: 142 KQIHGLVFKLGF-----GFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLID 196
           KQIH    + G       F+K ++ +LVS+ A    +    ++F+ +   ++ +WN +I 
Sbjct: 52  KQIHAFSIRHGVPPQNPDFNKHLIFALVSLSAP---MSFAAQIFNQIQAPNIFTWNTMIR 108

Query: 197 GYVKKGEVEVAMKLFDEM-------PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRN 249
           G+ +      A++LF +M       PD   F +  L    +K   V +   I   +    
Sbjct: 109 GFAESENPSPAVELFSQMHAASSILPDTHTFPF--LFKAVAKLMDVSLGEGIHSVVVRNG 166

Query: 250 LVSW----NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLE 305
             S     N++++ Y   G + SA ++F+ M  RD + WNS+I G+ LNG   EAL L  
Sbjct: 167 FDSLRFVQNSLVHMYSVLGSLXSAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYR 226

Query: 306 TMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCG 365
            M    V P+  T+VS LSA   L  L  G  +H Y+VK G V +      L+ +YSKCG
Sbjct: 227 EMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCG 286

Query: 366 SIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN 425
           +   A  VF  + ++ V  WT++IVGL ++G+  +AL LF ++ R G+KP+ ITF+GVL 
Sbjct: 287 NFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLY 346

Query: 426 ACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNF 485
           ACSH G++++G  YF  M  +YGI P IEH+GC+VD+LCR G + +A   I +MP+ PN 
Sbjct: 347 ACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNA 406

Query: 486 VIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMM 545
           VIW +LL     HG+ ++GE A   + ++     G +V+LSN+YA+  +W  V  VR++M
Sbjct: 407 VIWRTLLGACTIHGHLELGEVARAEIQRLEQRHSGDFVLLSNLYASERRWLDVQNVRKIM 466

Query: 546 KKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVL 605
             +G +K PG S +E +  ++EF++GD+SHPQ++E ++ L+++   LK  G+VP T  VL
Sbjct: 467 LMKGVKKTPGYSLVELKNRVYEFIMGDRSHPQSEETYAMLAKITQLLKIEGYVPRTVNVL 526

Query: 606 LCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNR 665
             IE++ EKE  L +H+E++AIAF L+N    +PIRI+KNLRVC DCH   KL+S ++ R
Sbjct: 527 ADIEEE-EKETALSHHTEKVAIAFMLVNTPPGTPIRIMKNLRVCADCHLAIKLISKVFER 585

Query: 666 EIIVRDNSRFHHFKNGSCSCKDFW 689
           EIIVRD SRFHHFK+GSCSCKD+W
Sbjct: 586 EIIVRDRSRFHHFKDGSCSCKDYW 609



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 162/313 (51%), Gaps = 10/313 (3%)

Query: 32  STHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYN 91
           S+  + +Q+HA S++  +   +   ++ L   +      + +A  IF++I Q P++  +N
Sbjct: 46  SSQSKLKQIHAFSIRHGVPPQNPDFNKHLIFALVSLSAPMSFAAQIFNQI-QAPNIFTWN 104

Query: 92  LLIKCYVFNQRSHEALTLFCDL-LDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFK 150
            +I+ +  ++    A+ LF  +     +LPD  T P + K  A+L  +  G+ IH +V +
Sbjct: 105 TMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVR 164

Query: 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
            GF   +FV +SLV MY+  G +    +VF+ M  +D V+WN +I+G+   G    A+ L
Sbjct: 165 NGFDSLRFVQNSLVHMYSVLGSLXSAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTL 224

Query: 211 FDEMP----DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLV----SWNAMINGYMK 262
           + EM     + D F+   L+    + G + +   +   M    LV    + NA+++ Y K
Sbjct: 225 YREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHASNALLDLYSK 284

Query: 263 AGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSA 322
            G+   A ++FD+ME R +++W S+I G  +NG   EAL+L   +    + P++ T V  
Sbjct: 285 CGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGV 344

Query: 323 LSAVAGLAVLNKG 335
           L A +   +L++G
Sbjct: 345 LYACSHCGMLDEG 357



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/329 (22%), Positives = 153/329 (46%), Gaps = 21/329 (6%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           + +H++ V+        + + L+ +Y    + +L  A  +F+ I+ +   V +N +I  +
Sbjct: 156 EGIHSVVVRNGFDSLRFVQNSLVHMY--SVLGSLXSAYQVFE-IMSYRDRVAWNSVINGF 212

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
             N   +EALTL+ ++    + PD FT+  ++     LGA+  G+++H  + K+G   ++
Sbjct: 213 ALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQ 272

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
              ++L+ +Y+K G     ++VFD M+++ +VSW  LI G    G    A+KLF E+  +
Sbjct: 273 HASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQ 332

Query: 218 DL----FSWTCLVDGFSKCGKVEIAREIFYRMPNR-----NLVSWNAMINGYMKAGDVDS 268
            L     ++  ++   S CG ++     F RM         +     M++   +AG V  
Sbjct: 333 GLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVGD 392

Query: 269 ACELFDDMEI-RDLITWNSMIAGYELNGRF-MEALELLETMLIGDVLPNDATLVSALSAV 326
           A +   +M +  + + W +++    ++G   +  +   E   +      D  L+S L A 
Sbjct: 393 AYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVARAEIQRLEQRHSGDFVLLSNLYA- 451

Query: 327 AGLAVLNKGRWMHSYIVKNGFVVDGVLGT 355
                 ++ RW+    V+   ++ GV  T
Sbjct: 452 ------SERRWLDVQNVRKIMLMKGVKKT 474


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 254/689 (36%), Positives = 373/689 (54%), Gaps = 49/689 (7%)

Query: 44  SVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRS 103
           S+ TN+  H G+  RL+ + ++  + + + AR +FD I Q P     + LI     +  S
Sbjct: 5   SLPTNIPSHLGL--RLIRVALN--VGDFNRARQLFDNIPQ-PDPTTCSTLISALTTHGLS 59

Query: 104 HEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSL 163
           +EA+ ++  L +R + PD        K  A  G     K++H    + G   D FV ++L
Sbjct: 60  NEAIKIYSSLQERGIKPDMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNAL 119

Query: 164 VSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDR 217
           +  Y K   ++  RRVFD +  +D+VSW  L   YVK G     M +F EM      P+ 
Sbjct: 120 IHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNP 179

Query: 218 ---------------------------------DLFSWTCLVDGFSKCGKVEIAREIFYR 244
                                            +LF  + LV  ++KC  V  AR +F  
Sbjct: 180 MTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDL 239

Query: 245 MPNRNLVSWNAMINGYMKAGDVDSACELFDDME---IR-DLITWNSMIAGYELNGRFMEA 300
           MP+R++VSWN ++  Y K  + +    LF  M    +R D  TWN++I G   NGR  EA
Sbjct: 240 MPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEA 299

Query: 301 LELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQM 360
           +E+   M      PN+ T+ S L A +    L  G+ +H Y+ ++  V D    T L+ M
Sbjct: 300 VEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYM 359

Query: 361 YSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITF 420
           Y+KCG +  +  VF  + +K V  W  MI+   MHG   +AL LF+KM    ++P ++TF
Sbjct: 360 YAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTF 419

Query: 421 IGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP 480
            GVL+ CSH+ LV +G + FN M  D+ +EP   HY C+VDI  R G L EA   I+ MP
Sbjct: 420 TGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMP 479

Query: 481 MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSE 540
           M P    W +LL+  R + N ++ + +A  L ++ P+  G YV L NI   A  W + S+
Sbjct: 480 MEPTASAWGALLAACRVYKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQ 539

Query: 541 VREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPD 600
           VR +MK+RG  K PG S ++    +H FVVGDKS+ ++D+I++ L E+  K+K AG+ PD
Sbjct: 540 VRILMKERGITKTPGCSWLQVGNKVHTFVVGDKSNIESDKIYNFLDELVEKMKMAGYKPD 599

Query: 601 TTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLS 660
           T  VL  I DQ+EK   L NHSE+LA+AFG++N+  +S IR+ KNLR+C DCH+  K +S
Sbjct: 600 TDYVLQDI-DQEEKAESLCNHSEKLAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMS 658

Query: 661 GIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            +    I+VRD+ RFHHFKNG+CSCKD W
Sbjct: 659 KVVGVIIVVRDSLRFHHFKNGNCSCKDLW 687



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 137/301 (45%), Gaps = 48/301 (15%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           K  +++H  +V+  ++ +  + S L+SLY      ++  AR +FD ++ H  +V +N ++
Sbjct: 196 KSGKEIHGFAVRHGMVVNLFVCSALVSLYA--KCLSVREARMVFD-LMPHRDVVSWNGVL 252

Query: 95  KCYVFNQ-----------------------------------RSHEALTLFCDLLDRFLL 119
             Y  N+                                   RS EA+ +F  +      
Sbjct: 253 TAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFK 312

Query: 120 PDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRV 179
           P+  T+  ++   +    ++ GK+IH  VF+     D    ++L+ MYAK G+++L R V
Sbjct: 313 PNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNV 372

Query: 180 FDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM----PDRDLFSWTCLVDGFSKCGKV 235
           FD M  KD+V+WN +I      G  + A+ LFD+M       +  ++T ++ G S    V
Sbjct: 373 FDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLV 432

Query: 236 EIAREIFYRMPNRNLVS-----WNAMINGYMKAGDVDSACELFDDMEIRDLIT-WNSMIA 289
           E   +IF  M   +LV      ++ +++ Y +AG ++ A +    M +    + W +++A
Sbjct: 433 EEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLA 492

Query: 290 G 290
            
Sbjct: 493 A 493


>gi|357519251|ref|XP_003629914.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523936|gb|AET04390.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 244/689 (35%), Positives = 372/689 (53%), Gaps = 54/689 (7%)

Query: 47  TNLIYHSGISSRLLSLYVDPHINN--LHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSH 104
           T LI +   SS  L+     H+ N  L  AR++F++I   P + LY  L+  Y  N   H
Sbjct: 47  TTLIQNPKSSSTSLNFTFLNHLKNQKLDSARAVFNKI-PSPHVSLYTKLLLAYAHNNNLH 105

Query: 105 EALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLV 164
           EA+ LF  +       D  +   VIK +          ++    F      +    ++++
Sbjct: 106 EAINLFNQIPSN--TKDTISWNSVIKASIICNDFVTAVKL----FDEMPQRNSISWTTII 159

Query: 165 SMYAKFGEIDLGRRVFDAMD--DKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSW 222
             +   G ++   R F+AM   DKD+ +WN +++GY   G V  A++LF +MP RD+ SW
Sbjct: 160 HGFLSTGRVNEAERFFNAMPYVDKDVATWNAMVNGYCNNGRVNDALRLFCQMPSRDVISW 219

Query: 223 TCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNA--------------------------- 255
           T ++ G  + GK   A   F  M   + V  ++                           
Sbjct: 220 TSIIVGLDRNGKSYQALFFFKNMVGFSGVGISSTTLVCGLSAAAKILDFYAGIQIHCCMF 279

Query: 256 ---------------MINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEA 300
                          ++  Y     +  AC++F +   ++++ W +++ G  LN + +EA
Sbjct: 280 KFGFCCGLDEFVSASLVTFYASCKRMGDACKVFGETVCKNVVVWTALLTGCGLNDKHVEA 339

Query: 301 LELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQM 360
           LE+   M+  +V+PN+++  SAL++  GL  L KGR +H+  +K G       G  L+ M
Sbjct: 340 LEVFSEMMRFNVVPNESSFTSALNSCVGLEDLEKGRVIHAAGIKMGLENAVYTGNSLVVM 399

Query: 361 YSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITF 420
           YSKCG I  AL VF+ I +K V  W ++IVG   HG  T AL LF +M R G++   IT 
Sbjct: 400 YSKCGFIGDALCVFKGICEKNVVSWNSVIVGCAQHGCGTWALVLFKEMLREGVESDEITL 459

Query: 421 IGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP 480
            G+L+ACS +G++   R +F        ++ T+EHY C+VD+L R G +EEA++   SMP
Sbjct: 460 TGLLSACSRSGMLQKARCFFGYFARKRSMKLTVEHYACMVDVLGRCGEVEEAEALATSMP 519

Query: 481 MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSE 540
           +  N ++W+ LLS  R H + D+ E AA  + ++ PD    YV+LSN+YA++ +W +V+ 
Sbjct: 520 VEANSMVWLVLLSACRVHSSLDVAERAAKRIFEMEPDCSAAYVLLSNLYASSRRWLEVAR 579

Query: 541 VREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPD 600
           +R  MK  G  K PGSS I  +G+ HEF+  D+SHP T+EI+ KL  +  KL+  G++PD
Sbjct: 580 IRMKMKHNGIVKQPGSSWITLKGMRHEFLSADRSHPLTEEIYEKLVWLGVKLRELGYIPD 639

Query: 601 TTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLS 660
               L  +E ++ +E  L  HSERLAIAFGL++    S I I+KNLRVC DCH+   L++
Sbjct: 640 QQFALHDVEIEQNEEM-LSYHSERLAIAFGLLSTVEGSTITIMKNLRVCGDCHTAITLMA 698

Query: 661 GIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            I NREI+VRD+SRFHHFKNG CSC D+W
Sbjct: 699 KIVNREIVVRDSSRFHHFKNGICSCGDYW 727


>gi|297740626|emb|CBI30808.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 241/675 (35%), Positives = 368/675 (54%), Gaps = 65/675 (9%)

Query: 64  VDPHINN--LHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPD 121
           +  H+ N  +  AR++FD++   P + LY ++I  Y  N R   AL LF ++     + D
Sbjct: 2   ITDHLRNQRIDEARTVFDKV-SFPDVYLYTMMITGYARNYRFDHALQLFYEMP----VKD 56

Query: 122 NFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSM------YAKFGEIDL 175
             +   +IKG      +   +++          FD+    S+VS       + +FG+I++
Sbjct: 57  VVSWNSMIKGCFDCADLTMARKL----------FDEMPERSVVSWTTMINGFLQFGKIEV 106

Query: 176 GRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKV 235
              +F  M  +D+ +WN +I GY   G VE  ++LF EMP R++ SWT ++ G  + G+ 
Sbjct: 107 AEGLFYKMPFRDIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRS 166

Query: 236 EIAREIFYRM--------PNRNLV----------------------------SWNAMING 259
           E A  +F +M        P  +                              S++A I+ 
Sbjct: 167 EEALGLFRQMMGCGVEVKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISA 226

Query: 260 -----YMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLP 314
                Y     ++ +  +F      +++ W +++ GY LN +  +AL++   M+   VLP
Sbjct: 227 ALITFYANCKQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLP 286

Query: 315 NDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVF 374
           N ++  SAL++  GL  L+ GR +H+  VK G   D  +G  LI MY +CG++   + +F
Sbjct: 287 NQSSFTSALNSCCGLEALDWGREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIF 346

Query: 375 RAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVN 434
           + ISKK +  W ++IVG   HG    AL  FN+M R  ++P  ITF G+L+ACSH+G+  
Sbjct: 347 KRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQ 406

Query: 435 DGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG 494
            GR  F     +   E  ++HY C+VDIL R+G LEEA+  I +MP++ N ++W+ LLS 
Sbjct: 407 KGRCLFKYFSENKSAEVKLDHYACMVDILGRSGKLEEAEELIRNMPVKANSMVWLVLLSA 466

Query: 495 ARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDP 554
              H   ++ E AA  +I + P     YV+LSN+YA+A +W  VS +R  MK+RG  K P
Sbjct: 467 CTMHSKLEVAERAAKCIIDLEPHCSSAYVLLSNLYASASRWSDVSRIRREMKQRGITKQP 526

Query: 555 GSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEK 614
           G S I  +G  +EF+ GD+SHP +D I+ KL  +  KLK  G+VPD    L  +ED+ +K
Sbjct: 527 GRSWITIKGWRNEFLSGDRSHPSSDRIYQKLEWLGGKLKELGYVPDQRFALHDVEDE-QK 585

Query: 615 EAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSR 674
           E  L  HSERLAI FGLI+    S I ++KNLRVC DCHS  KL++ I  R+IIVRD++R
Sbjct: 586 EVMLSYHSERLAIGFGLISTVEGSTITVMKNLRVCGDCHSAIKLIAKIVRRKIIVRDSTR 645

Query: 675 FHHFKNGSCSCKDFW 689
           FHHF +G CSC D+W
Sbjct: 646 FHHFMDGRCSCGDYW 660


>gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 758

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 216/579 (37%), Positives = 349/579 (60%), Gaps = 4/579 (0%)

Query: 27  ILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPS 86
           +L+    ++   Q+ A  V   L ++  ++   ++         +H+AR +FD+I Q P+
Sbjct: 18  LLRSCKNYERLHQIQAQIVTHGLEHNDFVAPNFIT--TCSRFKRIHHARKLFDKIPQ-PN 74

Query: 87  LVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHG 146
              +N + + Y+ N    + + LF +L     +P+ FT P +IK   +L  ++EG+++H 
Sbjct: 75  TATWNAMFRGYLQNGHHRDTVVLFGELNRIAGMPNCFTFPMIIKSCGKLEGVREGEEVHC 134

Query: 147 LVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEV 206
              K GF  + FV +SL+ MY+K G ++   +VF  M ++++V W  +I+GY+  G+V  
Sbjct: 135 CATKHGFKSNSFVATSLIDMYSKKGCVEDAYKVFGEMHERNVVVWTAIINGYILCGDVVS 194

Query: 207 AMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDV 266
             +LFD  P+RD+  W+ L+ G+ +   +  ARE+F +MPNR+ +SWNAM+NGY   G+V
Sbjct: 195 GRRLFDLAPERDVVMWSVLISGYIESKNMAAARELFDKMPNRDTMSWNAMLNGYAVNGEV 254

Query: 267 DSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLI-GDVLPNDATLVSALSA 325
           +   ++FD+M  R++ +WN +I GY  NG F E LE  + ML+ G V+PND TLV+ LSA
Sbjct: 255 EMFEKVFDEMPERNVFSWNGLIGGYVKNGLFSETLESFKRMLVEGHVIPNDFTLVAVLSA 314

Query: 326 VAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHW 385
            + L  L+ G+W+H Y    G+  +  +G +LI MY+KCG IE+A+ VF  + +K +  W
Sbjct: 315 CSRLGALDMGKWVHVYAESIGYKGNLFVGNVLIDMYAKCGVIENAVVVFNCLDRKDIISW 374

Query: 386 TAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN 445
             +I GL +HG A  AL +F++M   G +P  +TF+G+L+AC+H GLV DG  YF  M++
Sbjct: 375 NTIINGLAIHGHAPDALGMFDRMKSEGEEPDGVTFVGILSACTHMGLVKDGFLYFKSMVD 434

Query: 446 DYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGE 505
            Y I P IEHYGC+VD+L R G L++A + I  MP+ P+ VIW +LL   R + N +I E
Sbjct: 435 HYSIVPQIEHYGCMVDLLGRAGLLDQALNFIRKMPIEPDAVIWAALLGACRLYKNVEIAE 494

Query: 506 YAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVL 565
            A   LI++ P+    +V++SNIY   G+ + V+ ++  M+  GFRK PG S IE    +
Sbjct: 495 LALQRLIELEPNNPANFVMVSNIYKDLGRSEDVARLKIAMRDTGFRKLPGCSVIECNDSV 554

Query: 566 HEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQV 604
            EF   D+ H +T+ I+  L  +   L++ G+VP+ + V
Sbjct: 555 VEFYSLDERHSETESIYRVLKGLTMLLRSHGYVPNLSDV 593


>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
          Length = 785

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 227/612 (37%), Positives = 351/612 (57%), Gaps = 14/612 (2%)

Query: 87  LVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHG 146
           L++ N L+  Y  + R    L L C L       D+FT   V+     L  I  G+QIH 
Sbjct: 179 LIVGNTLVDSYCKSNR----LDLACQLFKEMPEIDSFTFAAVLCANIGLDDIVLGQQIHS 234

Query: 147 LVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEV 206
            V K  F ++ FV ++L+  Y+K   +   R++FD M ++D VS+N +I GY   G+ + 
Sbjct: 235 FVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKY 294

Query: 207 AMKLFDEMP----DRDLFSWTCLVDGFSKCGKVEIAREIFYRM----PNRNLVSWNAMIN 258
           A  LF E+     DR  F +  ++   S     E+ R+I  +      +  ++  N++++
Sbjct: 295 AFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVD 354

Query: 259 GYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDAT 318
            Y K G  + A  +F ++  R  + W +MI+ Y   G + E L+L   M    V+ + AT
Sbjct: 355 MYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQAT 414

Query: 319 LVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS 378
             S L A A +A L+ G+ +HS+I+K+GF+ +   G+ L+ +Y+KCGSI+ A+  F+ + 
Sbjct: 415 FASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMP 474

Query: 379 KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR 438
            + +  W AMI     +G A   L  F +M   G++P +++F+GVL+ACSH+GLV +G  
Sbjct: 475 DRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLW 534

Query: 439 YFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNH 498
           +FN M   Y ++P  EHY  +VD+LCR+G   EA+  +  MP+ P+ ++W S+L+  R H
Sbjct: 535 HFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIH 594

Query: 499 GNKDIGEYAANNLIKVAP-DTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSS 557
            N+++   AA+ L  +        YV +SNIYAAAGQW+ VS+V + M+ RG +K P  S
Sbjct: 595 KNQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYS 654

Query: 558 SIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAE 617
            +E +   H F   D+ HPQ +EI  K+  +   ++  G+ PDT+   L  ED+K K   
Sbjct: 655 WVEIKHETHMFSANDRCHPQIEEIRKKIDMLTKTMEELGYKPDTS-CALHNEDEKFKVES 713

Query: 618 LENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHH 677
           L+ HSERLAIAF LI+    SPI ++KNLR C DCH+  K++S I  REI VRD++RFHH
Sbjct: 714 LKYHSERLAIAFALISTPEGSPILVMKNLRACIDCHAAIKVISKIVGREITVRDSTRFHH 773

Query: 678 FKNGSCSCKDFW 689
           F++G CSC DFW
Sbjct: 774 FRDGFCSCGDFW 785



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 133/283 (46%), Gaps = 42/283 (14%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           QQ+H+  +KTN +++  +S+ LL  Y   H +++  AR +FD + +    V YN++I  Y
Sbjct: 230 QQIHSFVIKTNFVWNVFVSNALLDFY-SKH-DSVIDARKLFDEMPEQDG-VSYNVIISGY 286

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
            ++ +   A  LF +L         F    ++  A+     + G+QIH          + 
Sbjct: 287 AWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEI 346

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD- 216
            V +SLV MYAK G+ +    +F  +  +  V W  +I  YV+KG  E  ++LF++M   
Sbjct: 347 LVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQA 406

Query: 217 --------------------------------------RDLFSWTCLVDGFSKCGKVEIA 238
                                                  ++FS + L+D ++KCG ++ A
Sbjct: 407 SVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDA 466

Query: 239 REIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDL 281
            + F  MP+RN+VSWNAMI+ Y + G+ ++  + F +M +  L
Sbjct: 467 VQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGL 509



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 95/364 (26%), Positives = 160/364 (43%), Gaps = 14/364 (3%)

Query: 144 IHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGE 203
           I   + K GF  D    +  V  + K GE+   R++F+ M  K+ VS N +I GYVK G 
Sbjct: 34  IDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGN 93

Query: 204 VEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM------PNR-NLVSWNAM 256
           +  A KLFD M +R   +WT L+ G+S+  + + A E+F +M      P+    V+  + 
Sbjct: 94  LGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSG 153

Query: 257 INGYMKAGDVDSA-CELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPN 315
            NG+     +     ++        LI  N+++  Y  + R   A +L + M   D    
Sbjct: 154 CNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSF-- 211

Query: 316 DATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFR 375
             T  + L A  GL  +  G+ +HS+++K  FV +  +   L+  YSK  S+  A  +F 
Sbjct: 212 --TFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFD 269

Query: 376 AISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVND 435
            + ++    +  +I G    G    A DLF ++           F  +L+  S+      
Sbjct: 270 EMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEM 329

Query: 436 GRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGA 495
           GR+     I     +  I     LVD+  + G  EEA+    ++  R + V W +++S  
Sbjct: 330 GRQIHAQTIVTTA-DSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHR-SAVPWTAMISAY 387

Query: 496 RNHG 499
              G
Sbjct: 388 VQKG 391



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 123/263 (46%), Gaps = 17/263 (6%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +Q+HA ++ T       + + L+ +Y          A  IF   L H S V +  +I  Y
Sbjct: 331 RQIHAQTIVTTADSEILVGNSLVDMYA--KCGKFEEAEMIFTN-LTHRSAVPWTAMISAY 387

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
           V      E L LF  +    ++ D  T   +++ +A + ++  GKQ+H  + K GF  + 
Sbjct: 388 VQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNV 447

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP-- 215
           F  S+L+ +YAK G I    + F  M D+++VSWN +I  Y + GE E  +K F EM   
Sbjct: 448 FSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLS 507

Query: 216 --DRDLFSWTCLVDGFSKCGKVEIA-------REIFYRMPNRNLVSWNAMINGYMKAGDV 266
               D  S+  ++   S  G VE          +I+   P R    + ++++   ++G  
Sbjct: 508 GLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRRE--HYASVVDMLCRSGRF 565

Query: 267 DSACELFDDMEIR-DLITWNSMI 288
           + A +L  +M I  D I W+S++
Sbjct: 566 NEAEKLMAEMPIDPDEIMWSSVL 588


>gi|15228590|ref|NP_187008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207453|sp|Q9SS60.1|PP210_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g03580
 gi|6091764|gb|AAF03474.1|AC009327_13 hypothetical protein [Arabidopsis thaliana]
 gi|28393735|gb|AAO42278.1| unknown protein [Arabidopsis thaliana]
 gi|29824355|gb|AAP04138.1| unknown protein [Arabidopsis thaliana]
 gi|332640438|gb|AEE73959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 882

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 237/663 (35%), Positives = 386/663 (58%), Gaps = 12/663 (1%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           K+ Q LH  ++K+ +     +++ L+++Y+         AR +FD +    S V YN +I
Sbjct: 224 KQGQGLHGFALKSGVNSVVVVNNGLVAMYL--KFRRPTDARRVFDEMDVRDS-VSYNTMI 280

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
             Y+  +   E++ +F + LD+F  PD  T+  V++    L  +   K I+  + K GF 
Sbjct: 281 CGYLKLEMVEESVRMFLENLDQFK-PDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFV 339

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
            +  V + L+ +YAK G++   R VF++M+ KD VSWN +I GY++ G++  AMKLF  M
Sbjct: 340 LESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMM 399

Query: 215 ----PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR----NLVSWNAMINGYMKAGDV 266
                  D  ++  L+   ++   ++  + +           +L   NA+I+ Y K G+V
Sbjct: 400 MIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEV 459

Query: 267 DSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326
             + ++F  M   D +TWN++I+     G F   L++   M   +V+P+ AT +  L   
Sbjct: 460 GDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMC 519

Query: 327 AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWT 386
           A LA    G+ +H  +++ G+  +  +G  LI+MYSKCG +E++  VF  +S++ V  WT
Sbjct: 520 ASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWT 579

Query: 387 AMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIND 446
            MI   GM+G   +AL+ F  M + G+ P ++ FI ++ ACSH+GLV++G   F  M   
Sbjct: 580 GMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLACFEKMKTH 639

Query: 447 YGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEY 506
           Y I+P IEHY C+VD+L R+  + +A+  I++MP++P+  IW S+L   R  G+ +  E 
Sbjct: 640 YKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIKPDASIWASVLRACRTSGDMETAER 699

Query: 507 AANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLH 566
            +  +I++ PD  G  ++ SN YAA  +WDKVS +R+ +K +   K+PG S IE    +H
Sbjct: 700 VSRRIIELNPDDPGYSILASNAYAALRKWDKVSLIRKSLKDKHITKNPGYSWIEVGKNVH 759

Query: 567 EFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLA 626
            F  GD S PQ++ I+  L  + + +   G++PD  +V   +E+++EK   +  HSERLA
Sbjct: 760 VFSSGDDSAPQSEAIYKSLEILYSLMAKEGYIPDPREVSQNLEEEEEKRRLICGHSERLA 819

Query: 627 IAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCK 686
           IAFGL+N +  +P++++KNLRVC DCH VTKL+S I  REI+VRD +RFH FK+G+CSCK
Sbjct: 820 IAFGLLNTEPGTPLQVMKNLRVCGDCHEVTKLISKIVGREILVRDANRFHLFKDGTCSCK 879

Query: 687 DFW 689
           D W
Sbjct: 880 DRW 882



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 141/528 (26%), Positives = 249/528 (47%), Gaps = 29/528 (5%)

Query: 15  LQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYA 74
           +Q  + S      L  SS   E +++HAL +   L      S +L+  Y   H      +
Sbjct: 1   MQTRVSSPFISRALSSSSNLNELRRIHALVISLGLDSSDFFSGKLIDKY--SHFREPASS 58

Query: 75  RSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAAR 134
            S+F R+    ++ L+N +I+ +  N    EAL  +  L +  + PD +T P VIK  A 
Sbjct: 59  LSVFRRVSPAKNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAG 118

Query: 135 LGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCL 194
           L   + G  ++  +  +GF  D FV ++LV MY++ G +   R+VFD M  +DLVSWN L
Sbjct: 119 LFDAEMGDLVYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSL 178

Query: 195 IDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREI----FYRMP 246
           I GY   G  E A++++ E+ +     D F+ + ++  F     V+  + +         
Sbjct: 179 ISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGV 238

Query: 247 NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGY-------ELNGRFME 299
           N  +V  N ++  Y+K      A  +FD+M++RD +++N+MI GY       E    F+E
Sbjct: 239 NSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLE 298

Query: 300 ALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQ 359
            L+  +        P+  T+ S L A   L  L+  +++++Y++K GFV++  +  +LI 
Sbjct: 299 NLDQFK--------PDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILID 350

Query: 360 MYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAIT 419
           +Y+KCG + +A  VF ++  K    W ++I G    G   +A+ LF  M  M  +   IT
Sbjct: 351 VYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHIT 410

Query: 420 FIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM 479
           ++ +++  +    +  G+   +  I   GI   +     L+D+  + G + ++     SM
Sbjct: 411 YLMLISVSTRLADLKFGKGLHSNGIKS-GICIDLSVSNALIDMYAKCGEVGDSLKIFSSM 469

Query: 480 PMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIK--VAPDTIGCYVVL 525
               + V W +++S     G+   G      + K  V PD     V L
Sbjct: 470 GT-GDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTL 516


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 243/642 (37%), Positives = 348/642 (54%), Gaps = 41/642 (6%)

Query: 88  VLYNLLIKCYVFNQRSHEALTLFCDLL-DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHG 146
           V YN LI  +        ++ L+  LL +  + P   TL  +I  A+ L     G  +H 
Sbjct: 111 VSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHSVHC 170

Query: 147 LVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEV 206
            V +LGFG   FV S LV MYAK G I   RRVF  M+ K +V +N LI G ++   +E 
Sbjct: 171 QVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIED 230

Query: 207 AMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR------------------ 248
           A  LF  M DRD  +WT +V G ++ G    A ++F RM                     
Sbjct: 231 AKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGA 290

Query: 249 ---------------------NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSM 287
                                N+   +A+++ Y K   +  A  +F  M  R++I+W +M
Sbjct: 291 LAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAM 350

Query: 288 IAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGF 347
           I GY  N    EA+     M +  + P+D TL S +S+ A LA L +G   H   + +G 
Sbjct: 351 IVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGL 410

Query: 348 VVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNK 407
           +    +   L+ +Y KCGSIE A  +F  +S      WTA++ G    G A + +DLF K
Sbjct: 411 MRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEK 470

Query: 408 MCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTG 467
           M   G+KP  +TFIGVL+ACS AGLV  G  YF+ M  D+GI P  +HY C++D+  R+G
Sbjct: 471 MLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSG 530

Query: 468 YLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSN 527
             +EA+  I+ MP  P+   W +LLS  R  GN +IG++AA NL++  P     YV+L +
Sbjct: 531 RFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCS 590

Query: 528 IYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSE 587
           ++AA GQW +V+ +R  M+ R  +K+PG S I+++  +H F   D+SHP +  I+ KL  
Sbjct: 591 MHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSSRIYEKLEW 650

Query: 588 MRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLR 647
           + +K+   G+ PD + VL  + D  +K   + +HSE+LAIAFGLI V    PIRIVKNLR
Sbjct: 651 LNSKMAEEGYKPDVSSVLHDVAD-ADKVHMISHHSEKLAIAFGLIFVPQEMPIRIVKNLR 709

Query: 648 VCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           VC DCH+ TK +S I  R+I+VRD  RFH F +G+CSC DFW
Sbjct: 710 VCVDCHNATKFISKITGRDILVRDAVRFHKFSDGTCSCGDFW 751



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 128/486 (26%), Positives = 211/486 (43%), Gaps = 81/486 (16%)

Query: 138 IKEGKQIHGLVFKLGF-GFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLID 196
           ++    +H L+ K        F+L+ L++ YAK G +   RRVFD M D +L + N L+ 
Sbjct: 28  VRVAGAVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLS 87

Query: 197 GYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCG----KVEIAREIFYR---MPNRN 249
                  V    +LF  MP+RD  S+  L+ GFS  G     V++ R +       P R 
Sbjct: 88  ALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRI 147

Query: 250 LVSW---------------------------------NAMINGYMKAGDVDSACELFDDM 276
            +S                                  + +++ Y K G +  A  +F +M
Sbjct: 148 TLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEM 207

Query: 277 EI-------------------------------RDLITWNSMIAGYELNGRFMEALELLE 305
           E                                RD ITW +M+ G   NG  +EAL++  
Sbjct: 208 EAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFR 267

Query: 306 TMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCG 365
            M    V  +  T  S L+A   LA L +G+ +H+YI +  +  +  +G+ L+ MYSKC 
Sbjct: 268 RMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCR 327

Query: 366 SIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN 425
           SI  A  VFR ++ + +  WTAMIVG G +  + +A+  F++M   G+KP   T   V++
Sbjct: 328 SIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVIS 387

Query: 426 ACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNF 485
           +C++   + +G ++  + +   G+   I     LV +  + G +E+A    + M      
Sbjct: 388 SCANLASLEEGAQFHCLALVS-GLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQ- 445

Query: 486 VIWMSLLSGARNHGNK----DIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEV 541
           V W +L++G    G      D+ E    N +K  PD +    VLS   + AG  +K  + 
Sbjct: 446 VSWTALVTGYAQFGKAKETIDLFEKMLANGLK--PDGVTFIGVLSAC-SRAGLVEKGCDY 502

Query: 542 REMMKK 547
            + M+K
Sbjct: 503 FDSMQK 508



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 86/340 (25%), Positives = 157/340 (46%), Gaps = 17/340 (5%)

Query: 40  LHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVF 99
              +  KT ++Y++ I+  L    ++        A+ +F  ++   S+  +  ++     
Sbjct: 204 FQEMEAKTVVMYNTLITGLLRCKMIED-------AKGLFQLMVDRDSIT-WTTMVTGLTQ 255

Query: 100 NQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFV 159
           N    EAL +F  +    +  D +T   ++     L A++EGKQIH  + +  +  + FV
Sbjct: 256 NGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFV 315

Query: 160 LSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP---- 215
            S+LV MY+K   I L   VF  M  ++++SW  +I GY +    E A++ F EM     
Sbjct: 316 GSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGI 375

Query: 216 DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSW----NAMINGYMKAGDVDSACE 271
             D F+   ++   +    +E   +         L+ +    NA++  Y K G ++ A  
Sbjct: 376 KPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHR 435

Query: 272 LFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAV 331
           LFD+M   D ++W +++ GY   G+  E ++L E ML   + P+  T +  LSA +   +
Sbjct: 436 LFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGL 495

Query: 332 LNKG-RWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESA 370
           + KG  +  S    +G V      T +I +YS+ G  + A
Sbjct: 496 VEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEA 535



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 141/308 (45%), Gaps = 38/308 (12%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           +E +Q+HA   +T    +  + S L+ +Y      ++  A ++F R+    +++ +  +I
Sbjct: 295 EEGKQIHAYITRTWYEDNVFVGSALVDMY--SKCRSIRLAEAVFRRMTCR-NIISWTAMI 351

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
             Y  N  S EA+  F ++    + PD+FTL  VI   A L +++EG Q H L    G  
Sbjct: 352 VGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLM 411

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
               V ++LV++Y K G I+   R+FD M   D VSW  L+ GY + G+ +  + LF++M
Sbjct: 412 RYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKM 471

Query: 215 PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFD 274
                     L +G    G                 V++  +++   +AG V+  C+ FD
Sbjct: 472 ----------LANGLKPDG-----------------VTFIGVLSACSRAGLVEKGCDYFD 504

Query: 275 DMEIRDLIT-----WNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGL 329
            M+    I      +  MI  Y  +GRF EA E ++ M         ATL+S+      +
Sbjct: 505 SMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNM 564

Query: 330 AVLNKGRW 337
            +   G+W
Sbjct: 565 EI---GKW 569


>gi|15223594|ref|NP_176062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173061|sp|Q9FXB9.1|PPR84_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g56690, mitochondrial; Flags: Precursor
 gi|9954744|gb|AAG09095.1|AC009323_6 Hypothetical protein [Arabidopsis thaliana]
 gi|332195302|gb|AEE33423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 235/656 (35%), Positives = 375/656 (57%), Gaps = 17/656 (2%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           KE +QL     + N++  +G    L+S Y+   +  +  AR++F+ ++   ++V +  ++
Sbjct: 65  KEARQLFDEMSERNVVSWNG----LVSGYIKNRM--IVEARNVFE-LMPERNVVSWTAMV 117

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
           K Y+      EA +LF  + +R    +  +   +  G    G I + ++++ ++      
Sbjct: 118 KGYMQEGMVGEAESLFWRMPER----NEVSWTVMFGGLIDDGRIDKARKLYDMMPVK--- 170

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
            D    ++++    + G +D  R +FD M ++++V+W  +I GY +   V+VA KLF+ M
Sbjct: 171 -DVVASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVM 229

Query: 215 PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFD 274
           P++   SWT ++ G++  G++E A E F  MP + +++ NAMI G+ + G++  A  +FD
Sbjct: 230 PEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVGFGEVGEISKARRVFD 289

Query: 275 DMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNK 334
            ME RD  TW  MI  YE  G  +EAL+L   M    V P+  +L+S LS  A LA L  
Sbjct: 290 LMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQY 349

Query: 335 GRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGM 394
           GR +H+++V+  F  D  + ++L+ MY KCG +  A  VF   S K +  W ++I G   
Sbjct: 350 GRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYAS 409

Query: 395 HGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIE 454
           HG+  +AL +F++M   G  P  +T I +L ACS+AG + +G   F  M + + + PT+E
Sbjct: 410 HGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVE 469

Query: 455 HYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKV 514
           HY C VD+L R G +++A   IESM ++P+  +W +LL   + H   D+ E AA  L + 
Sbjct: 470 HYSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFEN 529

Query: 515 APDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGD-K 573
            PD  G YV+LS+I A+  +W  V+ VR+ M+     K PG S IE    +H F  G  K
Sbjct: 530 EPDNAGTYVLLSSINASRSKWGDVAVVRKNMRTNNVSKFPGCSWIEVGKKVHMFTRGGIK 589

Query: 574 SHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLIN 633
           +HP+   I   L +    L+ AG+ PD + VL  + D++EK   L  HSERLA+A+GL+ 
Sbjct: 590 NHPEQAMILMMLEKTDGLLREAGYSPDCSHVLHDV-DEEEKVDSLSRHSERLAVAYGLLK 648

Query: 634 VKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           +    PIR++KNLRVC DCH+  KL+S +  REII+RD +RFHHF NG CSC+D+W
Sbjct: 649 LPEGVPIRVMKNLRVCGDCHAAIKLISKVTEREIILRDANRFHHFNNGECSCRDYW 704



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 114/408 (27%), Positives = 188/408 (46%), Gaps = 52/408 (12%)

Query: 133 ARLGAIKEGKQI-HGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSW 191
           +R+G I E ++    L FK    ++     S+VS Y   G     R++FD M ++++VSW
Sbjct: 28  SRIGKINEARKFFDSLQFKAIGSWN-----SIVSGYFSNGLPKEARQLFDEMSERNVVSW 82

Query: 192 NCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLV 251
           N L+ GY+K   +  A  +F+ MP+R++ SWT +V G+ + G V  A  +F+RMP RN V
Sbjct: 83  NGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPERNEV 142

Query: 252 SWNA-------------------------------MINGYMKAGDVDSACELFDDMEIRD 280
           SW                                 MI G  + G VD A  +FD+M  R+
Sbjct: 143 SWTVMFGGLIDDGRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVDEARLIFDEMRERN 202

Query: 281 LITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHS 340
           ++TW +MI GY  N R   A +L E M        + T VS  S + G  +   GR   +
Sbjct: 203 VVTWTTMITGYRQNNRVDVARKLFEVM-------PEKTEVSWTSMLLGYTL--SGRIEDA 253

Query: 341 YIVKNGFVVDGVLG-TLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMAT 399
                   +  V+    +I  + + G I  A  VF  +  +    W  MI      G   
Sbjct: 254 EEFFEVMPMKPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFEL 313

Query: 400 QALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCL 459
           +ALDLF +M + G++P+  + I +L+ C+    +  GR+    ++     +  +     L
Sbjct: 314 EALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVR-CQFDDDVYVASVL 372

Query: 460 VDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYA 507
           + +  + G L +AK   +    + + ++W S++SG  +HG   +GE A
Sbjct: 373 MTMYVKCGELVKAKLVFDRFSSK-DIIMWNSIISGYASHG---LGEEA 416



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 105/376 (27%), Positives = 179/376 (47%), Gaps = 23/376 (6%)

Query: 164 VSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWT 223
           +S  ++ G+I+  R+ FD++  K + SWN ++ GY   G  + A +LFDEM +R++ SW 
Sbjct: 24  ISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERNVVSWN 83

Query: 224 CLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLIT 283
            LV G+ K   +  AR +F  MP RN+VSW AM+ GYM+ G V  A  LF  M  R+ ++
Sbjct: 84  GLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPERNEVS 143

Query: 284 WNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIV 343
           W  M  G   +GR  +A +L + M + DV       V++ + + GL    +GR   + ++
Sbjct: 144 WTVMFGGLIDDGRIDKARKLYDMMPVKDV-------VASTNMIGGLC--REGRVDEARLI 194

Query: 344 KNGFVVDGVLG-TLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQAL 402
            +      V+  T +I  Y +   ++ A  +F  + +K    WT+M++G  + G    A 
Sbjct: 195 FDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAE 254

Query: 403 DLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDI 462
           + F     M MKP  I    ++      G ++  RR F++M +          +  ++  
Sbjct: 255 EFFEV---MPMKPV-IACNAMIVGFGEVGEISKARRVFDLMEDRDNAT-----WRGMIKA 305

Query: 463 LCRTGYLEEAKSTIESMP---MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVA-PDT 518
             R G+  EA      M    +RP+F   +S+LS      +   G     +L++    D 
Sbjct: 306 YERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDD 365

Query: 519 IGCYVVLSNIYAAAGQ 534
           +    VL  +Y   G+
Sbjct: 366 VYVASVLMTMYVKCGE 381



 Score = 48.5 bits (114), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 82/192 (42%), Gaps = 16/192 (8%)

Query: 351 GVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCR 410
           GV  +  I   S+ G I  A   F ++  K +G W +++ G   +G+  +A  LF++M  
Sbjct: 17  GVNCSFEISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMS- 75

Query: 411 MGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLE 470
              +   +++ G+++      ++ + R  F +M      E  +  +  +V    + G + 
Sbjct: 76  ---ERNVVSWNGLVSGYIKNRMIVEARNVFELM-----PERNVVSWTAMVKGYMQEGMVG 127

Query: 471 EAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYA 530
           EA+S    MP R N V W  +  G  + G  D     A  L  + P  +   V  +N+  
Sbjct: 128 EAESLFWRMPER-NEVSWTVMFGGLIDDGRID----KARKLYDMMP--VKDVVASTNMIG 180

Query: 531 AAGQWDKVSEVR 542
              +  +V E R
Sbjct: 181 GLCREGRVDEAR 192


>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 250/710 (35%), Positives = 400/710 (56%), Gaps = 58/710 (8%)

Query: 1   MQTQTLQHSSPIHALQQHLPSRLHW--NILKFSSTHKETQQLHA-LSVKTNLIYHSGISS 57
           ++++ L H S  H +   LPS  H+  ++L+  ++    + +H+ LS +  L++     +
Sbjct: 4   LKSRALHHLSHTHKVLA-LPSLHHFYDHLLQCCTSLTTLKLIHSSLSTRGFLLHTPHFLA 62

Query: 58  RLLSLYVDPHINNLHYARSIFDRIL-------QHPSLVLYNLLIKCYVFNQRSHEALTLF 110
           RL+ LY    + +LH AR++FD          Q P+  L N +++ Y    RS+EA+ L+
Sbjct: 63  RLIILY--SKLGDLHSARTLFDHRHHHHHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLY 120

Query: 111 CDLLDRFLLPDNFTLPCVIK-GAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAK 169
             +    +  +NFT P V+K  A+ LGA+  G+ +HG V + GFG D FV ++LV M   
Sbjct: 121 IYMQRMGVGVNNFTYPFVLKVCASELGAVF-GEVVHGQVVRTGFGSDLFVEAALVDM--- 176

Query: 170 FGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGF 229
                                       Y K GE+  A ++FD M  RD+  WT ++  +
Sbjct: 177 ----------------------------YAKCGEIGDAHEVFDRMLIRDVVCWTAMITLY 208

Query: 230 SKCGKVEIAREIFYRMPNRNL----VSWNAMINGYMKAGD----VDSACELFDDMEIRDL 281
            +  +   A  +F +M         ++  ++ +   + GD    +  A  +FD ME R+ 
Sbjct: 209 EQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISRARLVFDRMEERNG 268

Query: 282 ITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSY 341
           I+WNSM++GY  NGR  +AL L   M   +  PN  T +  +SA + L   + GR +H++
Sbjct: 269 ISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNF 328

Query: 342 IVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFR--AISKKKVGHWTAMIVGLGMHGMAT 399
           ++ +   +D  L   ++ MY KCG +++A+ +F    + ++ V  W  +I G G+HG   
Sbjct: 329 VISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGK 388

Query: 400 QALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCL 459
           +AL+LF++M   G++P  ITF  +L+ACSHAGL+++GR+ F  M     + P ++HY C+
Sbjct: 389 EALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADM-TKLSVRPEMKHYACM 447

Query: 460 VDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTI 519
           VD+L R G+L EA   I+ +P RP+  +W +LL   R HGN ++GE AANNL ++ P+  
Sbjct: 448 VDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTELGEIAANNLFQLEPEHT 507

Query: 520 GCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTD 579
           G YV++SNIYAA+ +W +V  VR+ MK RG +K    S IE    +H F   D+S P   
Sbjct: 508 GYYVLMSNIYAASNKWKEVEMVRQNMKSRGLKKPAAFSVIEFGTEVHGFHTADQSSPYYR 567

Query: 580 EIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSP 639
           E++ K+  +  ++K  G+VPD + VL  +E + +KE  L  HSE+LA+AFG++ +    P
Sbjct: 568 EVYRKVESLAIEMKMVGYVPDLSCVLHDVEPE-DKEHLLNYHSEKLAVAFGIMKMDQGMP 626

Query: 640 IRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           I++ KNLRVC+DCH   K +S IY R+IIVRD +RFHHF+ G CSC D+W
Sbjct: 627 IQVTKNLRVCSDCHWAFKFISSIYGRKIIVRDGNRFHHFQGGRCSCGDYW 676


>gi|345505204|gb|AEN99826.1| chlororespiratory reduction 4, partial [Aethionema cordifolium]
          Length = 587

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 241/579 (41%), Positives = 330/579 (56%), Gaps = 43/579 (7%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNL-HYARSIFDRI----LQHPSL-- 87
           +  +Q+HA  +KT  I +S +++R++  +       L  +AR +F         H  +  
Sbjct: 4   RRCEQIHARLIKTGFIQNSNLTTRIVLAFAASRRPYLAEFARCVFQNYHSCSFAHGEVED 63

Query: 88  -VLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHG 146
             L+N +IK +        AL  FC +L+  +  D F+L  V+K  +RLG ++EG QIHG
Sbjct: 64  PFLWNAVIKSHSHGVDPKRALIWFCLMLENGVSVDKFSLSLVLKACSRLGFVQEGMQIHG 123

Query: 147 LVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKG---- 202
            + K G   D F+ + L+ +Y K G +   R++FD M  +D VS+N +IDGYVK G    
Sbjct: 124 FLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGLIGS 183

Query: 203 ------------------------------EVEVAMKLFDEMPDRDLFSWTCLVDGFSKC 232
                                          V +A KLF EMP++DL SW  L+DG+ K 
Sbjct: 184 ARELFDLMPKEMKNLISWNSMISGYAQTSDGVNIASKLFAEMPEKDLISWNSLIDGYVKH 243

Query: 233 GKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYE 292
           G++E A+++FY MP R++V+W  MI+GY K G V  A  LFD M  RD++ +NSM+AGY 
Sbjct: 244 GRMEDAKDLFYVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHRDVVAYNSMMAGYV 303

Query: 293 LNGRFMEALELLETMLIGDVL-PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDG 351
            N   MEALE+   M     L P++ TLV  LSA+A L  L+K   M+ YIV+  F + G
Sbjct: 304 QNKYHMEALEIFNNMEKDSHLSPDETTLVIVLSAIAQLGRLSKAMSMNKYIVEKSFPLGG 363

Query: 352 VLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRM 411
            LG  LI M+SKCGSI+ A++VF  I  K + HW AMI GL +HG    A D+  ++ R 
Sbjct: 364 KLGVALIDMHSKCGSIQQAISVFEGIKNKSIDHWNAMIGGLAIHGHGELAFDMLMQIERC 423

Query: 412 GMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEE 471
            +KP  ITFIGVLNACSH+GLV +G   F +M   + IEP ++HYGC+VDIL R+G +E 
Sbjct: 424 SIKPDDITFIGVLNACSHSGLVKEGLLSFELMRRKHKIEPRLQHYGCIVDILSRSGSIEL 483

Query: 472 AKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAA 531
           AK  IE MPM PN VIW + L   RN    +IGE  A +LI  A      YV+LSN+YA+
Sbjct: 484 AKHLIEDMPMEPNDVIWRTFLIACRNRKEFEIGELVAKHLILQAGYNPSSYVLLSNMYAS 543

Query: 532 AGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVV 570
            G W  V  VR MMK+R   K PG S IE  G +HEF V
Sbjct: 544 LGMWKDVRRVRMMMKQRKLHKIPGCSWIELDGNVHEFFV 582


>gi|302793246|ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
 gi|300153737|gb|EFJ20374.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
          Length = 687

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 234/628 (37%), Positives = 354/628 (56%), Gaps = 16/628 (2%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           AR +FD  +   S+  +N +I  Y  ++RS EA  +F  +       D  T   ++    
Sbjct: 64  ARKVFDG-MPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDACV 122

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
               ++ GK +   + +  F  D FV ++L++MYA+    +   +VF  M  K+L++W+ 
Sbjct: 123 NPENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLITWSA 182

Query: 194 LIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPN 247
           +I  +   G    A++ F  M      P+R  F    L++GF+    +E    I   +  
Sbjct: 183 IITAFADHGHCGEALRYFRMMQQEGILPNRVTF--ISLLNGFTTPSGLEELSRIHLLITE 240

Query: 248 RNL----VSWNAMIN--GYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEAL 301
             L       NA++N  G  + G++D A  +  +M+ + +  WN +I GY L+GR  EAL
Sbjct: 241 HGLDDTTTMSNALVNVYGRCETGELDVAEVILQEMDEQQITAWNVLINGYTLHGRSREAL 300

Query: 302 ELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMY 361
           E  + + +  +  +  T +S L+A      L +G+ +HS  V+ G   D ++   L  MY
Sbjct: 301 ETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMY 360

Query: 362 SKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFI 421
           SKCGS+E+A  +F ++  +    W  M+     HG + + L L  KM + G+K   ITF+
Sbjct: 361 SKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFV 420

Query: 422 GVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPM 481
            VL++CSHAGL+ +G +YF+ + +D GIE   EHYGCLVD+L R G L+EA+  I  MP 
Sbjct: 421 SVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPS 480

Query: 482 RPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEV 541
            P  V W SLL   R H + D G+ AA  L+++ P      VVLSNIY+  G W   +++
Sbjct: 481 EPEIVTWASLLGACRVHKDLDRGKLAARKLLELDPGNSSASVVLSNIYSERGDWKNAAKL 540

Query: 542 REMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDT 601
           R  M  R  +K PG SSI+ +  +HEF V D SHP+  EI+ K+ E+   ++ AG+VPDT
Sbjct: 541 RRAMASRRVKKVPGISSIQVKNKVHEFRVRDTSHPRAAEIYDKVEELCFAMREAGYVPDT 600

Query: 602 TQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSG 661
             VL  + D+++KE+ L  HSE+LAIAFGLI+   +S + I KNLRVC DCH+ TK +S 
Sbjct: 601 KMVLHDV-DEEQKESLLAYHSEKLAIAFGLISTPEKSSLHIFKNLRVCEDCHTATKFISK 659

Query: 662 IYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           I  REI+VRDN RFHHF++GSCSCKD+W
Sbjct: 660 ITGREIVVRDNHRFHHFRDGSCSCKDYW 687



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 94/407 (23%), Positives = 173/407 (42%), Gaps = 74/407 (18%)

Query: 137 AIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLID 196
           A+++GK IH  V +     D FV ++LV+ Y K G +   R+VFD M  + + +WN +I 
Sbjct: 25  ALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMIS 84

Query: 197 GYVKKGEVEVAMKLFDEMP------DR--------------------------------- 217
            Y        A  +F  M       DR                                 
Sbjct: 85  AYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDACVNPENLQHGKHVRESISETSFEL 144

Query: 218 DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDME 277
           DLF  T L+  +++C   E A ++F RM  +NL++W+A+I  +                 
Sbjct: 145 DLFVGTALITMYARCRSPENAAQVFGRMKQKNLITWSAIITAFAD--------------- 189

Query: 278 IRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRW 337
                           +G   EAL     M    +LPN  T +S L+     + L +   
Sbjct: 190 ----------------HGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSR 233

Query: 338 MHSYIVKNGFVVDGVLGTLLIQMYSKC--GSIESALTVFRAISKKKVGHWTAMIVGLGMH 395
           +H  I ++G      +   L+ +Y +C  G ++ A  + + + ++++  W  +I G  +H
Sbjct: 234 IHLLITEHGLDDTTTMSNALVNVYGRCETGELDVAEVILQEMDEQQITAWNVLINGYTLH 293

Query: 396 GMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEH 455
           G + +AL+ + ++    +    +TFI VLNAC+ +  + +G+   +  + + G++  +  
Sbjct: 294 GRSREALETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAV-ECGLDSDVIV 352

Query: 456 YGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKD 502
              L ++  + G +E A+   +SMP+R + V W  +L     HG  +
Sbjct: 353 KNALTNMYSKCGSMENARRIFDSMPIR-SAVSWNGMLQAYAQHGESE 398



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 95/194 (48%), Gaps = 2/194 (1%)

Query: 307 MLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGS 366
           ML+  V  N  T ++ L++V     L KG+++HS + ++   +D  + T L+  Y+KCGS
Sbjct: 1   MLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGS 60

Query: 367 IESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNA 426
           +  A  VF  +  + VG W +MI    +   + +A  +F +M   G +   +TF+ +L+A
Sbjct: 61  LTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDA 120

Query: 427 CSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFV 486
           C +   +  G ++    I++   E  +     L+ +  R    E A      M  + N +
Sbjct: 121 CVNPENLQHG-KHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQK-NLI 178

Query: 487 IWMSLLSGARNHGN 500
            W ++++   +HG+
Sbjct: 179 TWSAIITAFADHGH 192


>gi|326522230|dbj|BAK04243.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 628

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 206/464 (44%), Positives = 300/464 (64%), Gaps = 1/464 (0%)

Query: 226 VDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWN 285
           V  ++  G V   R  F  + + ++V   AM+      GDVD+A ELFD M  RD + WN
Sbjct: 166 VSMYAAVGDVGAVRAAFAEIVSPDVVCVTAMLGALSAGGDVDTARELFDGMPQRDHVAWN 225

Query: 286 SMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKN 345
           +M+ GY   GR  EAL L + M    V  ++ TLVS L+A A +  L +G W+HSY+   
Sbjct: 226 AMLTGYVRVGRSREALGLFDEMQKAGVAVSEVTLVSVLTACAQMGALERGMWVHSYVCSR 285

Query: 346 GFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLF 405
           G  V   LGT L+ MYSKCG +  ++ VF  + ++ +  WT+ + GL M+GM  + L+LF
Sbjct: 286 GMRVSVTLGTALVDMYSKCGVVTMSMEVFETMRERNIYTWTSALSGLAMNGMGEECLELF 345

Query: 406 NKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCR 465
            +M   GM+P  +TF+ VL  CS AGLV +GR  F+ M + + +EP +EHYGC+VD+  R
Sbjct: 346 KRMESAGMEPNGVTFVAVLRGCSVAGLVEEGRACFDSMKDKHKVEPWLEHYGCMVDLYGR 405

Query: 466 TGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVL 525
            G L++A   I SMP+ P+  +W +LL+ +R H N D+G++A + L ++       +V+L
Sbjct: 406 AGRLDDAVDFINSMPVEPHEGVWGALLNASRIHNNVDLGKHAMHKLTEIESKNDAAHVLL 465

Query: 526 SNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKL 585
           SNIYA +  W  VS+VR MMK +G +K PG S+IE  G +HEF VG KSHP+  +I + L
Sbjct: 466 SNIYAESHNWKGVSKVRNMMKSKGVKKMPGCSAIEVDGKVHEFFVGSKSHPRYKDIQTML 525

Query: 586 SEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKN 645
           +EM ++L+  G+  +T +VL  IE++ EKE  +  HSE+LA+AFGLI +   + IRIVKN
Sbjct: 526 AEMSHRLRLQGYAANTKEVLFDIEEE-EKEGAISLHSEKLALAFGLITLPEDTVIRIVKN 584

Query: 646 LRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           LRVC DCH  TKL+S +++REI++RD +RFHHFK+G+CSC+D+W
Sbjct: 585 LRVCKDCHDYTKLISKVFDREIVMRDRNRFHHFKHGACSCRDYW 628



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 128/305 (41%), Gaps = 51/305 (16%)

Query: 143 QIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKG 202
            +H   F+ G   D  V S  VSMYA  G++   R  F  +   D+V    ++      G
Sbjct: 145 SVHAAAFQHGHATDPHVQSGAVSMYAAVGDVGAVRAAFAEIVSPDVVCVTAMLGALSAGG 204

Query: 203 EVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR-------NLVS--- 252
           +V+ A +LFD MP RD  +W  ++ G+ + G+   A  +F  M           LVS   
Sbjct: 205 DVDTARELFDGMPQRDHVAWNAMLTGYVRVGRSREALGLFDEMQKAGVAVSEVTLVSVLT 264

Query: 253 ------------W-----------------NAMINGYMKAGDVDSACELFDDMEIRDLIT 283
                       W                  A+++ Y K G V  + E+F+ M  R++ T
Sbjct: 265 ACAQMGALERGMWVHSYVCSRGMRVSVTLGTALVDMYSKCGVVTMSMEVFETMRERNIYT 324

Query: 284 WNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIV 343
           W S ++G  +NG   E LEL + M    + PN  T V+ L   +   ++ +GR     + 
Sbjct: 325 WTSALSGLAMNGMGEECLELFKRMESAGMEPNGVTFVAVLRGCSVAGLVEEGRACFDSM- 383

Query: 344 KNGFVVDGVLG--TLLIQMYSKCGSIESALTVFRAIS-KKKVGHWTAMI--------VGL 392
           K+   V+  L     ++ +Y + G ++ A+    ++  +   G W A++        V L
Sbjct: 384 KDKHKVEPWLEHYGCMVDLYGRAGRLDDAVDFINSMPVEPHEGVWGALLNASRIHNNVDL 443

Query: 393 GMHGM 397
           G H M
Sbjct: 444 GKHAM 448



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 103/214 (48%), Gaps = 10/214 (4%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           AR +FD + Q    V +N ++  YV   RS EAL LF ++    +     TL  V+   A
Sbjct: 209 ARELFDGMPQRDH-VAWNAMLTGYVRVGRSREALGLFDEMQKAGVAVSEVTLVSVLTACA 267

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
           ++GA++ G  +H  V   G      + ++LV MY+K G + +   VF+ M ++++ +W  
Sbjct: 268 QMGALERGMWVHSYVCSRGMRVSVTLGTALVDMYSKCGVVTMSMEVFETMRERNIYTWTS 327

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNRN 249
            + G    G  E  ++LF  M    +     ++  ++ G S  G VE  R  F  M +++
Sbjct: 328 ALSGLAMNGMGEECLELFKRMESAGMEPNGVTFVAVLRGCSVAGLVEEGRACFDSMKDKH 387

Query: 250 LVS-----WNAMINGYMKAGDVDSACELFDDMEI 278
            V      +  M++ Y +AG +D A +  + M +
Sbjct: 388 KVEPWLEHYGCMVDLYGRAGRLDDAVDFINSMPV 421


>gi|357139833|ref|XP_003571481.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Brachypodium distachyon]
          Length = 617

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 222/538 (41%), Positives = 317/538 (58%), Gaps = 5/538 (0%)

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDD--KDLVSWNCLIDGYVKKGEVEVAMKLFDE 213
           D    ++L+S +   G++   R +F AM    +++ SWN ++ G  + G V  A  +F  
Sbjct: 81  DAVSYNTLLSCHFAAGDVRGARDLFAAMPATARNVTSWNTMLSGLSRSGAVGEARAVFLA 140

Query: 214 MPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR-NLVSWNAMINGYMKAGDVDSACEL 272
           MP R+  SW  +V  F+  G +  A E F   P++ N V W AM++GYM +G V+ A + 
Sbjct: 141 MPARNSISWNAMVSCFAHAGDMCAAEECFEDAPDKENAVLWTAMVSGYMDSGHVEKAMQF 200

Query: 273 FDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLI-GDVLPNDATLVSALSAVAGLAV 331
           F+ M +R L++WN+++AGY  N R  +AL + +TM+   DV PN++TL S L   + L+ 
Sbjct: 201 FEAMPVRSLVSWNAVVAGYVKNSRAEDALWVFKTMVRDADVRPNESTLSSVLLGCSNLSA 260

Query: 332 LNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVG 391
           L  GR +H +  K         GT L+ MY KCG ++ A  +F  +  + V  W AMI G
Sbjct: 261 LGFGRQVHQWCTKLPLSRRVTAGTSLVSMYCKCGDLDGACKLFSEMRIRDVIAWNAMISG 320

Query: 392 LGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP 451
              HG   +A++LF KM   G++P  ITF+ VL AC H G+ + G + F  M   YGIE 
Sbjct: 321 YAHHGDGREAIELFEKMKSQGVEPNWITFVAVLTACIHTGMCDFGMQCFERMQEVYGIEA 380

Query: 452 TIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNL 511
            ++HY C+VD+LCR G LE A S I SMP +P+   + +LL+ +R + N +  E+AA  L
Sbjct: 381 RVDHYSCMVDLLCRAGSLERAVSLIRSMPFQPHPSAYGTLLNASRVYKNMEFAEFAAGKL 440

Query: 512 IKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVG 571
           I+  P   G YV L+NIYA A QW  VS VR  MK     K PG S +E  GV+H F   
Sbjct: 441 IEQNPQNAGAYVQLANIYAVANQWADVSRVRRWMKDNAVVKTPGYSWVEINGVIHVFRSN 500

Query: 572 DKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGL 631
           D+ HPQ   IH +L ++  ++KA G+VPD    L  + D+  K   L  HSE+LAIAFGL
Sbjct: 501 DRLHPQLSLIHERLCQLEERMKAMGYVPDLDFALHDV-DESLKVQMLMRHSEKLAIAFGL 559

Query: 632 INVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           ++      +RI KNLRVC DCH+  KL+S I +REII+RD +RFHHF++G CSC D+W
Sbjct: 560 LSTAPGITLRIFKNLRVCGDCHTAAKLISKIEDREIILRDTTRFHHFRSGHCSCGDYW 617



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 117/232 (50%), Gaps = 11/232 (4%)

Query: 59  LLSLYVDPHINNLHYARSI-FDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL-DR 116
           L +  V  ++++ H  +++ F   +   SLV +N ++  YV N R+ +AL +F  ++ D 
Sbjct: 180 LWTAMVSGYMDSGHVEKAMQFFEAMPVRSLVSWNAVVAGYVKNSRAEDALWVFKTMVRDA 239

Query: 117 FLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLG 176
            + P+  TL  V+ G + L A+  G+Q+H    KL         +SLVSMY K G++D  
Sbjct: 240 DVRPNESTLSSVLLGCSNLSALGFGRQVHQWCTKLPLSRRVTAGTSLVSMYCKCGDLDGA 299

Query: 177 RRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL-FSWTCLVDGFSKC--- 232
            ++F  M  +D+++WN +I GY   G+   A++LF++M  + +  +W   V   + C   
Sbjct: 300 CKLFSEMRIRDVIAWNAMISGYAHHGDGREAIELFEKMKSQGVEPNWITFVAVLTACIHT 359

Query: 233 GKVEIAREIFYRMP-----NRNLVSWNAMINGYMKAGDVDSACELFDDMEIR 279
           G  +   + F RM         +  ++ M++   +AG ++ A  L   M  +
Sbjct: 360 GMCDFGMQCFERMQEVYGIEARVDHYSCMVDLLCRAGSLERAVSLIRSMPFQ 411



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 122/266 (45%), Gaps = 12/266 (4%)

Query: 238 AREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDME--IRDLITWNSMIAGYELNG 295
           AR +F R+P  + VS+N +++ +  AGDV  A +LF  M    R++ +WN+M++G   +G
Sbjct: 70  ARHLFDRIPRPDAVSYNTLLSCHFAAGDVRGARDLFAAMPATARNVTSWNTMLSGLSRSG 129

Query: 296 RFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGT 355
              EA  +   M   + +  +A +VS  +    +    +               + VL T
Sbjct: 130 AVGEARAVFLAMPARNSISWNA-MVSCFAHAGDMCAAEE------CFEDAPDKENAVLWT 182

Query: 356 LLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCR-MGMK 414
            ++  Y   G +E A+  F A+  + +  W A++ G   +  A  AL +F  M R   ++
Sbjct: 183 AMVSGYMDSGHVEKAMQFFEAMPVRSLVSWNAVVAGYVKNSRAEDALWVFKTMVRDADVR 242

Query: 415 PTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKS 474
           P   T   VL  CS+   +  GR+  +       +   +     LV + C+ G L+ A  
Sbjct: 243 PNESTLSSVLLGCSNLSALGFGRQ-VHQWCTKLPLSRRVTAGTSLVSMYCKCGDLDGACK 301

Query: 475 TIESMPMRPNFVIWMSLLSGARNHGN 500
               M +R + + W +++SG  +HG+
Sbjct: 302 LFSEMRIR-DVIAWNAMISGYAHHGD 326


>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 226/564 (40%), Positives = 340/564 (60%), Gaps = 22/564 (3%)

Query: 142 KQIHGLVFKLGF-----GFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLID 196
           KQIH    + G       F+K ++ +LVS+ A    +    ++F+ +   ++ +WN +I 
Sbjct: 52  KQIHAFSIRHGVPPQNPDFNKHLIFALVSLSAP---MSFAAQIFNQIQAPNIFTWNTMIR 108

Query: 197 GYVKKGEVEVAMKLFDEM-------PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRN 249
           G+ +      A++LF +M       PD   F +  L    +K   V +   I   +    
Sbjct: 109 GFAESENPSPAVELFSQMHAASSILPDTHTFPF--LFKAVAKLMDVSLGEGIHSVVVRNG 166

Query: 250 LVSW----NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLE 305
             S     N++++ Y   G  +SA ++F+ M  RD + WNS+I G+ LNG   EAL L  
Sbjct: 167 FDSLRFVQNSLVHMYSVFGFAESAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYR 226

Query: 306 TMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCG 365
            M    V P+  T+VS LSA   L  L  G  +H Y+VK G V +      L+ +YSKCG
Sbjct: 227 EMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCG 286

Query: 366 SIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN 425
           +   A  VF  + ++ V  WT++IVGL ++G+  +AL LF ++ R G+KP+ ITF+GVL 
Sbjct: 287 NFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLY 346

Query: 426 ACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNF 485
           ACSH G++++G  YF  M  +YGI P IEH+GC+VD+LCR G + +A   I +MP+ PN 
Sbjct: 347 ACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNA 406

Query: 486 VIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMM 545
           VIW +LL     HG+ ++GE A   + ++     G +V+LSN+YA+  +W  V  VR++M
Sbjct: 407 VIWRTLLGACTIHGHLELGEVARAEIQRLEQRHSGDFVLLSNLYASERRWLDVQNVRKIM 466

Query: 546 KKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVL 605
             +G +K PG S +E +  ++EF++GD+SHPQ++E ++ L+++   LK  G+VP T  VL
Sbjct: 467 LMKGVKKTPGYSLVELKNRVYEFIMGDRSHPQSEETYAMLAKITQLLKIEGYVPRTVNVL 526

Query: 606 LCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNR 665
             IE++ EKE  L +H+E++AIAF L+N    +PIRI+KNLRVC DCH   KL+S ++ R
Sbjct: 527 ADIEEE-EKETALSHHTEKVAIAFMLVNTPPGTPIRIMKNLRVCADCHLAIKLISKVFER 585

Query: 666 EIIVRDNSRFHHFKNGSCSCKDFW 689
           EIIVRD SRFHHFK+GSCSCKD+W
Sbjct: 586 EIIVRDRSRFHHFKDGSCSCKDYW 609



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 89/313 (28%), Positives = 163/313 (52%), Gaps = 10/313 (3%)

Query: 32  STHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYN 91
           S+  + +Q+HA S++  +   +   ++ L   +      + +A  IF++I Q P++  +N
Sbjct: 46  SSQSKLKQIHAFSIRHGVPPQNPDFNKHLIFALVSLSAPMSFAAQIFNQI-QAPNIFTWN 104

Query: 92  LLIKCYVFNQRSHEALTLFCDL-LDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFK 150
            +I+ +  ++    A+ LF  +     +LPD  T P + K  A+L  +  G+ IH +V +
Sbjct: 105 TMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVR 164

Query: 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
            GF   +FV +SLV MY+ FG  +   +VF+ M  +D V+WN +I+G+   G    A+ L
Sbjct: 165 NGFDSLRFVQNSLVHMYSVFGFAESAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTL 224

Query: 211 FDEMP----DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLV----SWNAMINGYMK 262
           + EM     + D F+   L+    + G + +   +   M    LV    + NA+++ Y K
Sbjct: 225 YREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHASNALLDLYSK 284

Query: 263 AGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSA 322
            G+   A ++FD+ME R +++W S+I G  +NG   EAL+L   +    + P++ T V  
Sbjct: 285 CGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGV 344

Query: 323 LSAVAGLAVLNKG 335
           L A +   +L++G
Sbjct: 345 LYACSHCGMLDEG 357



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 137/293 (46%), Gaps = 19/293 (6%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           A  +F+ I+ +   V +N +I  +  N   +EALTL+ ++    + PD FT+  ++    
Sbjct: 190 AYQVFE-IMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACV 248

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
            LGA+  G+++H  + K+G   ++   ++L+ +Y+K G     ++VFD M+++ +VSW  
Sbjct: 249 ELGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTS 308

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNR- 248
           LI G    G    A+KLF E+  + L     ++  ++   S CG ++     F RM    
Sbjct: 309 LIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEY 368

Query: 249 ----NLVSWNAMINGYMKAGDVDSACELFDDMEI-RDLITWNSMIAGYELNGRF-MEALE 302
                +     M++   +AG V  A +   +M +  + + W +++    ++G   +  + 
Sbjct: 369 GILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVA 428

Query: 303 LLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGT 355
             E   +      D  L+S L A       ++ RW+    V+   ++ GV  T
Sbjct: 429 RAEIQRLEQRHSGDFVLLSNLYA-------SERRWLDVQNVRKIMLMKGVKKT 474


>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
          Length = 643

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 237/624 (37%), Positives = 352/624 (56%), Gaps = 37/624 (5%)

Query: 102 RSHEALTLFCDLLDRFL------LPDN---FTLPCVIKGAARLGAIKEGKQIHGLVFKLG 152
           R+  A   FCD +  FL       P +    +LP  +K  A LG    G  +H L  + G
Sbjct: 21  RAAAAEGHFCDAVSLFLRMRASAAPRSSVPASLPAALKSCAALGLSALGASLHALAIRSG 80

Query: 153 FGFDKFVLSSLVSMYAKF----------GEIDLG---------RRVFDAMDDKDLVSWNC 193
              D+F  ++L+++Y K             +D+          R+VFD M ++D+VSWN 
Sbjct: 81  AFADRFTANALLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEMIERDVVSWNT 140

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREI----FYRM 245
           L+ G  ++G    A+    +M       D F+ + ++  F++C  V+   E+    F   
Sbjct: 141 LVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEVHGFAFRNG 200

Query: 246 PNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLE 305
            + ++   +++I+ Y      D + ++FD++ +RD I WNS++AG   NG   EAL +  
Sbjct: 201 FDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQNGSVEEALGIFR 260

Query: 306 TMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCG 365
            ML   V P   T  S +     LA L  G+ +H+Y++  GF  +  + + LI MY KCG
Sbjct: 261 RMLQAGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVICGGFEDNVFISSSLIDMYCKCG 320

Query: 366 SIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN 425
            I  A  +F  +S   V  WTAMI+G  +HG A +AL LF +M     KP  ITF+ VL 
Sbjct: 321 EISIAHCIFDKMSSPDVVSWTAMIMGYALHGPAREALVLFERMELGNAKPNHITFLAVLT 380

Query: 426 ACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNF 485
           ACSHAGLV+ G +YF  M N YGI PT+EH+  L D L R G L+EA + I  M ++P  
Sbjct: 381 ACSHAGLVDKGWKYFKSMSNHYGIVPTLEHFAALADTLGRAGELDEAYNFISKMQIKPTA 440

Query: 486 VIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMM 545
            +W +LL   R H N  + E  A  ++++ P +IG +VVLSN+Y+A+G+W++ + +RE M
Sbjct: 441 SVWSTLLRACRVHKNTMLAEEVAKKIMELEPRSIGSHVVLSNMYSASGRWNEAAHLRESM 500

Query: 546 KKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVL 605
           +K+G +KDP  S IE +  LH FV  D+SHP  D I   L+    ++   GHVP+T  V 
Sbjct: 501 RKKGMKKDPACSWIEVKSKLHVFVAHDRSHPWYDRIIDALNAFSEQMAREGHVPNTEDVF 560

Query: 606 LCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNR 665
             IE++  K   L  HSE+LAI FG+I+  + + IR++KNLRVC DCH+VTK +S + +R
Sbjct: 561 QDIEEE-HKSYVLCGHSEKLAIVFGIISTPAGTKIRVMKNLRVCIDCHTVTKFISKLADR 619

Query: 666 EIIVRDNSRFHHFKNGSCSCKDFW 689
           EI+VRD +RFHHFK+G+CSC DFW
Sbjct: 620 EIVVRDANRFHHFKDGNCSCGDFW 643


>gi|242041565|ref|XP_002468177.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
 gi|241922031|gb|EER95175.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
          Length = 640

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 230/567 (40%), Positives = 335/567 (59%), Gaps = 18/567 (3%)

Query: 137 AIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK-DLVSWNCLI 195
           A++ G+Q+H  +   G G D  + + LV +YA  G + + RR+FD M ++ ++  WN LI
Sbjct: 78  AVRPGRQLHARLLVSGLGLDAVLATRLVDLYASCGLVSVARRLFDEMPNQGNVFLWNVLI 137

Query: 196 DGYVKKGEVEVAMKLFDEM-----PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNL 250
             Y + G  E A++L+ EM      + D F++  ++   +    +   RE+  R+     
Sbjct: 138 RAYARDGPREAAIELYREMLACGSMEPDNFTYPPVLKACAALLDLGAGREVHDRVMR--- 194

Query: 251 VSWNA-------MINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALEL 303
            SW A       +I+ Y K G VD A  +FD   +RD + WNSMIA    NGR  EAL L
Sbjct: 195 TSWAADVFVCAGLIDMYAKCGCVDEAWAVFDSTTVRDAVVWNSMIAACGQNGRPAEALAL 254

Query: 304 LETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSK 363
              M    + P   TLVSA+SA A    L +GR +H Y  + GF     L T L+ MY+K
Sbjct: 255 CRNMAAEGIAPTIVTLVSAISAAADAGALPRGRELHGYGWRRGFGSQDKLKTSLLDMYAK 314

Query: 364 CGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKM-CRMGMKPTAITFIG 422
            G +  A  +F  +  +++  W AMI G GMHG A  A +LF +M     + P  ITF+G
Sbjct: 315 SGWVTVARVLFDQLFHRELISWNAMICGFGMHGHADHACELFRRMRNEAQVMPDHITFVG 374

Query: 423 VLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMR 482
           VL+AC+H G+V + +  F++M+  Y I+P ++HY CLVD+L  +G  +EA   I+ M ++
Sbjct: 375 VLSACNHGGMVQEAKEVFDLMVTVYSIKPMVQHYTCLVDVLGHSGRFKEASDVIKGMLVK 434

Query: 483 PNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVR 542
           P+  IW +LL+G + H N ++ E A + LI++ P+  G YV+LSNIYA +G+W++ + VR
Sbjct: 435 PDSGIWGALLNGCKIHKNVELAELALHKLIELEPEDAGNYVLLSNIYAQSGKWEEAARVR 494

Query: 543 EMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTT 602
           ++M  RG +K    S IE +G  H F+VGD SHP++DEI+ +L  +   +   G+VPDTT
Sbjct: 495 KLMTNRGLKKIIACSWIELKGKSHGFLVGDASHPRSDEIYEELERLEGLISQTGYVPDTT 554

Query: 603 QVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGI 662
            V   +ED  EK   +  HSERLAIAFGLI+    + + + KNLRVC DCH V KL+S I
Sbjct: 555 SVFHNVEDD-EKRNMVRGHSERLAIAFGLISTPPGTKLLVTKNLRVCEDCHVVIKLISQI 613

Query: 663 YNREIIVRDNSRFHHFKNGSCSCKDFW 689
             REII+RD +R+HHF NG CSCKD W
Sbjct: 614 EQREIIIRDVNRYHHFVNGECSCKDHW 640



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 121/457 (26%), Positives = 199/457 (43%), Gaps = 56/457 (12%)

Query: 30  FSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVL 89
            S   +  +QLHA  + + L   + +++RL+ LY    + ++  AR +FD +    ++ L
Sbjct: 75  LSRAVRPGRQLHARLLVSGLGLDAVLATRLVDLYASCGLVSV--ARRLFDEMPNQGNVFL 132

Query: 90  YNLLIKCYVFNQRSHEALTLFCDLLD-RFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLV 148
           +N+LI+ Y  +     A+ L+ ++L    + PDNFT P V+K  A L  +  G+++H  V
Sbjct: 133 WNVLIRAYARDGPREAAIELYREMLACGSMEPDNFTYPPVLKACAALLDLGAGREVHDRV 192

Query: 149 FKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAM 208
            +  +  D FV + L+ MYAK G +D    VFD+   +D V WN +I    + G    A+
Sbjct: 193 MRTSWAADVFVCAGLIDMYAKCGCVDEAWAVFDSTTVRDAVVWNSMIAACGQNGRPAEAL 252

Query: 209 KLFDEMP--------------------------DRDL--FSW-----------TCLVDGF 229
            L   M                            R+L  + W           T L+D +
Sbjct: 253 ALCRNMAAEGIAPTIVTLVSAISAAADAGALPRGRELHGYGWRRGFGSQDKLKTSLLDMY 312

Query: 230 SKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDME-----IRDLITW 284
           +K G V +AR +F ++ +R L+SWNAMI G+   G  D ACELF  M      + D IT+
Sbjct: 313 AKSGWVTVARVLFDQLFHRELISWNAMICGFGMHGHADHACELFRRMRNEAQVMPDHITF 372

Query: 285 NSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVK 344
             +++     G   EA E+ + M+    +       + L  V G    + GR+  +  V 
Sbjct: 373 VGVLSACNHGGMVQEAKEVFDLMVTVYSIKPMVQHYTCLVDVLG----HSGRFKEASDVI 428

Query: 345 NGFVV---DGVLGTLL--IQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMAT 399
            G +V    G+ G LL   +++      E AL     +  +  G++  +       G   
Sbjct: 429 KGMLVKPDSGIWGALLNGCKIHKNVELAELALHKLIELEPEDAGNYVLLSNIYAQSGKWE 488

Query: 400 QALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDG 436
           +A  +   M   G+K         L   SH  LV D 
Sbjct: 489 EAARVRKLMTNRGLKKIIACSWIELKGKSHGFLVGDA 525


>gi|15235472|ref|NP_195434.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097747|sp|O23169.1|PP353_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g37170
 gi|2464864|emb|CAB16758.1| putative protein [Arabidopsis thaliana]
 gi|7270666|emb|CAB80383.1| putative protein [Arabidopsis thaliana]
 gi|332661361|gb|AEE86761.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 691

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 230/637 (36%), Positives = 353/637 (55%), Gaps = 50/637 (7%)

Query: 102 RSHEALTLFC---------DLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLG 152
           R  EA+ + C          LL R   P   T   +I+  ++  A++EGK++H  +   G
Sbjct: 56  RFGEAIDVLCGQKLLREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSG 115

Query: 153 FGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFD 212
           F     + + L+ MYAK G +   R+VFD M ++DL SWN +++GY + G +E A KLFD
Sbjct: 116 FVPGIVIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFD 175

Query: 213 EMPDRDLFSWTCLVDGFSKCGKVEIAREIF---YRMPNR--------------------- 248
           EM ++D +SWT +V G+ K  + E A  ++    R+PN                      
Sbjct: 176 EMTEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIR 235

Query: 249 ----------------NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYE 292
                           + V W+++++ Y K G +D A  +FD +  +D+++W SMI  Y 
Sbjct: 236 RGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYF 295

Query: 293 LNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV 352
            + R+ E   L   ++     PN+ T    L+A A L     G+ +H Y+ + GF     
Sbjct: 296 KSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSF 355

Query: 353 LGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG 412
             + L+ MY+KCG+IESA  V     K  +  WT++I G   +G   +AL  F+ + + G
Sbjct: 356 ASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSG 415

Query: 413 MKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEA 472
            KP  +TF+ VL+AC+HAGLV  G  +F  +   + +  T +HY CLVD+L R+G  E+ 
Sbjct: 416 TKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQL 475

Query: 473 KSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAA 532
           KS I  MPM+P+  +W S+L G   +GN D+ E AA  L K+ P+    YV ++NIYAAA
Sbjct: 476 KSVISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIYAAA 535

Query: 533 GQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKL 592
           G+W++  ++R+ M++ G  K PGSS  E +   H F+  D SHP  ++I   L E+R K+
Sbjct: 536 GKWEEEGKMRKRMQEIGVTKRPGSSWTEIKRKRHVFIAADTSHPMYNQIVEFLRELRKKM 595

Query: 593 KAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDC 652
           K  G+VP T+ VL  +ED+ +KE  L  HSE+LA+AF +++ +  + I++ KNLR C DC
Sbjct: 596 KEEGYVPATSLVLHDVEDE-QKEENLVYHSEKLAVAFAILSTEEGTAIKVFKNLRSCVDC 654

Query: 653 HSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           H   K +S I  R+I VRD++RFH F+NG CSC D+W
Sbjct: 655 HGAIKFISNITKRKITVRDSTRFHCFENGQCSCGDYW 691



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 95/373 (25%), Positives = 178/373 (47%), Gaps = 15/373 (4%)

Query: 71  LHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFL--LPDNFTLPCV 128
           L  AR +FD + +  S   +  ++  YV   +  EAL L+  L+ R     P+ FT+   
Sbjct: 167 LEEARKLFDEMTEKDSYS-WTAMVTGYVKKDQPEEALVLY-SLMQRVPNSRPNIFTVSIA 224

Query: 129 IKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDL 188
           +  AA +  I+ GK+IHG + + G   D+ + SSL+ MY K G ID  R +FD + +KD+
Sbjct: 225 VAAAAAVKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDV 284

Query: 189 VSWNCLIDGYVKKGEVEVAMKLFDEM----PDRDLFSWTCLVDGFSKCGKVEIAREIFYR 244
           VSW  +ID Y K         LF E+       + +++  +++  +     E+ +++   
Sbjct: 285 VSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGY 344

Query: 245 MPNRNLVSW----NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEA 300
           M       +    +++++ Y K G+++SA  + D     DL++W S+I G   NG+  EA
Sbjct: 345 MTRVGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEA 404

Query: 301 LELLETMLIGDVLPNDATLVSALSAVAGLAVLNKG-RWMHSYIVKNGFVVDGVLGTLLIQ 359
           L+  + +L     P+  T V+ LSA     ++ KG  + +S   K+         T L+ 
Sbjct: 405 LKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVD 464

Query: 360 MYSKCGSIESALTVFRAISKKKVGH-WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI 418
           + ++ G  E   +V   +  K     W +++ G   +G    A +   ++ ++  +   +
Sbjct: 465 LLARSGRFEQLKSVISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPE-NPV 523

Query: 419 TFIGVLNACSHAG 431
           T++ + N  + AG
Sbjct: 524 TYVTMANIYAAAG 536



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 143/318 (44%), Gaps = 49/318 (15%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           +  +++H   V+  L     + S L+ +Y       +  AR+IFD+I++   +V +  +I
Sbjct: 235 RRGKEIHGHIVRAGLDSDEVLWSSLMDMY--GKCGCIDEARNIFDKIVEK-DVVSWTSMI 291

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
             Y  + R  E  +LF +L+     P+ +T   V+   A L   + GKQ+HG + ++GF 
Sbjct: 292 DRYFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFD 351

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
              F  SSLV MY K G I+  + V D     DLVSW  LI G  + G+ + A+K FD +
Sbjct: 352 PYSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLL 411

Query: 215 ------PDRDLF----------------------------------SWTCLVDGFSKCGK 234
                 PD   F                                   +TCLVD  ++ G+
Sbjct: 412 LKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGR 471

Query: 235 VEIAREIFYRMPNR-NLVSWNAMINGYMKAGDVD----SACELFDDMEIRDLITWNSMIA 289
            E  + +   MP + +   W +++ G    G++D    +A ELF  +E  + +T+ +M  
Sbjct: 472 FEQLKSVISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELF-KIEPENPVTYVTMAN 530

Query: 290 GYELNGRFMEALELLETM 307
            Y   G++ E  ++ + M
Sbjct: 531 IYAAAGKWEEEGKMRKRM 548


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 236/625 (37%), Positives = 358/625 (57%), Gaps = 12/625 (1%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDR-FLLPDNFTLPCVIKGA 132
           AR +FDR+      V +N L+  Y  N  +  A+ +   + +     PD+ TL  V+   
Sbjct: 113 ARRVFDRMPVRDR-VAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPAC 171

Query: 133 ARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWN 192
           A   A+   ++ H    + G      V ++++  Y K G+I   R VFD M  K+ VSWN
Sbjct: 172 ANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWN 231

Query: 193 CLIDGYVKKGEVEVAMKLFDEMPDRDL-FSWTCLVDGFSKCGKVEI------AREIFYRM 245
            +IDGY + G+   A+ LF+ M +  +  +   ++     CG++          E+  R+
Sbjct: 232 AMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRI 291

Query: 246 P-NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELL 304
             + N+   NA+I  Y K   VD A  +FD+++ R  ++WN+MI G   NG   +A+ L 
Sbjct: 292 GLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLF 351

Query: 305 ETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKC 364
             M + +V P+  TLVS + A+A ++   + RW+H Y ++     D  + T LI MY+KC
Sbjct: 352 TRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKC 411

Query: 365 GSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVL 424
           G +  A  +F +  ++ V  W AMI G G HG    A++LF +M  +G+ P   TF+ VL
Sbjct: 412 GRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVL 471

Query: 425 NACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPN 484
           +ACSHAGLV++GR YF  M  DYG+EP +EHYG +VD+L R G L+EA + I+ MPM P 
Sbjct: 472 SACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPG 531

Query: 485 FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREM 544
             ++ ++L   + H N ++ E +A  + ++ P     +V+L+NIYA A  W  V+ VR  
Sbjct: 532 LSVYGAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTA 591

Query: 545 MKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQV 604
           M+K G +K PG S I+ +  +H F  G  +H Q  EI+S+L+++  ++KA G+VPDT  +
Sbjct: 592 MEKNGLQKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLIEEIKAVGYVPDTDSI 651

Query: 605 LLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYN 664
               +D K +   L  HSE+LAIAFGLI     + I+I KNLRVCNDCH+ TKL+S +  
Sbjct: 652 HDVEDDVKAQ--LLNTHSEKLAIAFGLIRTAPGTTIQIKKNLRVCNDCHNATKLISLVTG 709

Query: 665 REIIVRDNSRFHHFKNGSCSCKDFW 689
           REII+RD  RFHHFK+G CSC D+W
Sbjct: 710 REIIMRDIQRFHHFKDGKCSCGDYW 734



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 130/506 (25%), Positives = 208/506 (41%), Gaps = 88/506 (17%)

Query: 106 ALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVS 165
           AL  F  +      P   T   ++K  A  G +  G+ +H  +   G   +    ++L +
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 166 MYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLF-------DEMPDR- 217
           MYAK       RRVFD M  +D V+WN L+ GY + G   +AM++         E PD  
Sbjct: 103 MYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSI 162

Query: 218 DLFS--------------------------------WTCLVDGFSKCGKVEIAREIFYRM 245
            L S                                 T ++D + KCG +  AR +F  M
Sbjct: 163 TLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWM 222

Query: 246 PNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLE 305
           P +N VSWNAMI+GY + GD                                 EAL L  
Sbjct: 223 PTKNSVSWNAMIDGYAQNGDS-------------------------------REALALFN 251

Query: 306 TMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCG 365
            M+   V   D ++++AL A   L  L++G  +H  +V+ G   +  +   LI MYSKC 
Sbjct: 252 RMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCK 311

Query: 366 SIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN 425
            ++ A  VF  + ++    W AMI+G   +G +  A+ LF +M    +KP + T + V+ 
Sbjct: 312 RVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIP 371

Query: 426 ACSHAGLVNDGRRYFNMMINDYGIEPTIEH----YGCLVDILCRTGYLEEAKSTIESMPM 481
           A +        R      I+ Y I   ++        L+D+  + G +  A+    S   
Sbjct: 372 ALADISDPLQAR-----WIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARE 426

Query: 482 RPNFVIWMSLLSGARNH--GNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVS 539
           R + + W +++ G  +H  G   +  +     I + P+      VLS   + AG  D+  
Sbjct: 427 R-HVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSAC-SHAGLVDEGR 484

Query: 540 EVREMMKKRGFRKDPGSSSIEHRGVL 565
           E    MK+  +  +PG   +EH G +
Sbjct: 485 EYFTSMKE-DYGLEPG---MEHYGTM 506


>gi|449479821|ref|XP_004155717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 745

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 246/663 (37%), Positives = 377/663 (56%), Gaps = 36/663 (5%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           ++LH  + K        + + L+++Y       L  AR +FD++ +   +V +  ++ CY
Sbjct: 108 RELHGFAQKNGFASDVFVCNALMNMY--EKCGCLVSARLVFDQMPER-DVVSWTTMLGCY 164

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
           V ++   EAL L  ++    +      L  +I     L  +K G+ +HG + +   G +K
Sbjct: 165 VRSKAFGEALRLVREMQFVGVKLSGVALISLIAVFGNLLDMKSGRAVHGYIVR-NVGDEK 223

Query: 158 FVLS---SLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
             +S   +L+ MY K G +   +R+FD +  + +VSW  +I G ++   ++   K F+ M
Sbjct: 224 MEVSMTTALIDMYCKGGCLASAQRLFDRLSKRSVVSWTVMIAGCIRSCRLDEGAKNFNRM 283

Query: 215 PDRDLF-SWTCLVDGFSKCGKVEIAR--EIFYRMPNRN-----LVSWNAMINGYMKAGDV 266
            +  LF +   L+   ++CG V      + F+    RN     L    A+I+ Y K G V
Sbjct: 284 LEEKLFPNEITLLSLITECGFVGTLDLGKWFHAYLLRNGFGMSLALVTALIDMYGKCGQV 343

Query: 267 DSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326
             A  LF+ ++ +D+  W+ +I+ Y       +   L   ML  DV PN+ T+VS LS  
Sbjct: 344 GYARALFNGVKKKDVKIWSVLISAYAHVSCMDQVFNLFVEMLNNDVKPNNVTMVSLLSLC 403

Query: 327 AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWT 386
           A    L+ G+W H+YI ++G  VD +L T LI MY+KCG +  A ++F    ++ +  W 
Sbjct: 404 AEAGALDLGKWTHAYINRHGLEVDVILETALINMYAKCGDVTIARSLFNEAMQRDIRMWN 463

Query: 387 AMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIND 446
            M+ G  MHG   +AL+LF++M   G++P  ITF+ + +ACSH+GL              
Sbjct: 464 TMMAGFSMHGCGKEALELFSEMESHGVEPNDITFVSIFHACSHSGL-------------- 509

Query: 447 YGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEY 506
                 +EHYGCLVD+L R G+L+EA + IE+MPMRPN +IW +LL+  + H N  +GE 
Sbjct: 510 ------MEHYGCLVDLLGRAGHLDEAHNIIENMPMRPNTIIWGALLAACKLHKNLALGEV 563

Query: 507 AANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLH 566
           AA  ++++ P   G  V+ SNIYA+A +W+ V+ VRE M   G +K+PG S IE  G +H
Sbjct: 564 AARKILELDPQNCGYSVLKSNIYASAKRWNDVTSVREAMSHSGMKKEPGLSWIEVSGSVH 623

Query: 567 EFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLA 626
            F  GDK+  QT +++  ++EM  KL+ +G+ P+T  VLL I D++EKE+ L  HSE+LA
Sbjct: 624 HFKSGDKACTQTTKVYEMVTEMCIKLRESGYTPNTAAVLLNI-DEEEKESALSYHSEKLA 682

Query: 627 IAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCK 686
            AFGLI+    +PIRIVKNLR+C+DCH+ TKLLS IY R IIVRD +RFHHF  G CSC 
Sbjct: 683 TAFGLISTAPGTPIRIVKNLRICDDCHAATKLLSKIYGRTIIVRDRNRFHHFSEGYCSCM 742

Query: 687 DFW 689
            +W
Sbjct: 743 GYW 745



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 133/476 (27%), Positives = 228/476 (47%), Gaps = 36/476 (7%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           ++T QLHA  +KT               + +PH     +++S F           YNLLI
Sbjct: 23  QQTHQLHAHFIKTQ--------------FHNPHP---FFSQSHFTPEAN------YNLLI 59

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLP-DNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGF 153
             Y  N     +   +  +        DNF LP ++K  A+  +   G+++HG   K GF
Sbjct: 60  SSYTNNHLPQASFNCYLHMRSNDAAALDNFILPSLLKACAQASSGDLGRELHGFAQKNGF 119

Query: 154 GFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDE 213
             D FV ++L++MY K G +   R VFD M ++D+VSW  ++  YV+      A++L  E
Sbjct: 120 ASDVFVCNALMNMYEKCGCLVSARLVFDQMPERDVVSWTTMLGCYVRSKAFGEALRLVRE 179

Query: 214 MPDRDL----FSWTCLVDGFSKCGKVEIAREIF-YRMPN-----RNLVSWNAMINGYMKA 263
           M    +     +   L+  F     ++  R +  Y + N       +    A+I+ Y K 
Sbjct: 180 MQFVGVKLSGVALISLIAVFGNLLDMKSGRAVHGYIVRNVGDEKMEVSMTTALIDMYCKG 239

Query: 264 GDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSAL 323
           G + SA  LFD +  R +++W  MIAG   + R  E  +    ML   + PN+ TL+S +
Sbjct: 240 GCLASAQRLFDRLSKRSVVSWTVMIAGCIRSCRLDEGAKNFNRMLEEKLFPNEITLLSLI 299

Query: 324 SAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVG 383
           +    +  L+ G+W H+Y+++NGF +   L T LI MY KCG +  A  +F  + KK V 
Sbjct: 300 TECGFVGTLDLGKWFHAYLLRNGFGMSLALVTALIDMYGKCGQVGYARALFNGVKKKDVK 359

Query: 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMM 443
            W+ +I          Q  +LF +M    +KP  +T + +L+ C+ AG ++ G ++ +  
Sbjct: 360 IWSVLISAYAHVSCMDQVFNLFVEMLNNDVKPNNVTMVSLLSLCAEAGALDLG-KWTHAY 418

Query: 444 INDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
           IN +G+E  +     L+++  + G +  A+S      M+ +  +W ++++G   HG
Sbjct: 419 INRHGLEVDVILETALINMYAKCGDVTIARSLFNE-AMQRDIRMWNTMMAGFSMHG 473



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 93/204 (45%), Gaps = 4/204 (1%)

Query: 319 LVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS 378
           L S L A A  +  + GR +H +  KNGF  D  +   L+ MY KCG + SA  VF  + 
Sbjct: 91  LPSLLKACAQASSGDLGRELHGFAQKNGFASDVFVCNALMNMYEKCGCLVSARLVFDQMP 150

Query: 379 KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR 438
           ++ V  WT M+          +AL L  +M  +G+K + +  I ++    +   +  GR 
Sbjct: 151 ERDVVSWTTMLGCYVRSKAFGEALRLVREMQFVGVKLSGVALISLIAVFGNLLDMKSGRA 210

Query: 439 YFNMMINDYGIEP-TIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARN 497
               ++ + G E   +     L+D+ C+ G L  A+   + +  R + V W  +++G   
Sbjct: 211 VHGYIVRNVGDEKMEVSMTTALIDMYCKGGCLASAQRLFDRLSKR-SVVSWTVMIAGCIR 269

Query: 498 HGNKDIGEYAANNLI--KVAPDTI 519
               D G    N ++  K+ P+ I
Sbjct: 270 SCRLDEGAKNFNRMLEEKLFPNEI 293


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 237/655 (36%), Positives = 359/655 (54%), Gaps = 72/655 (10%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           AR +FD I ++  +V +  ++ CYV N+   E+L LF  +      P+NFT   V+K   
Sbjct: 199 ARQVFDAI-EYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACV 257

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
            L     GK +HG  FK  +  + FV   L                              
Sbjct: 258 GLEVFNVGKAVHGCAFKTSYLEELFVGVEL------------------------------ 287

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM------PN 247
            ID Y+K G+V+ A+++F+EMP  D+  W+ ++  +++  + E A E+F RM      PN
Sbjct: 288 -IDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPN 346

Query: 248 R---------------------------------NLVSWNAMINGYMKAGDVDSACELFD 274
           +                                 N+   NA+++ Y K G ++++ +LF 
Sbjct: 347 QFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFS 406

Query: 275 DMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNK 334
           +      ++WN++I GY   G   +AL L + ML   V   + T  S L A AG+A L  
Sbjct: 407 ESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEP 466

Query: 335 GRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGM 394
           G  +HS  VK  +  + V+G  LI MY+KCG+I+ A  VF  + +     W AMI G  +
Sbjct: 467 GSQIHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYSV 526

Query: 395 HGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIE 454
           HG+  +AL  F  M     KP  +TF+G+L+ACS+AGL++ G+ YF  M+ +Y IEP  E
Sbjct: 527 HGLYGEALKTFESMLETECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEYDIEPCAE 586

Query: 455 HYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKV 514
           HY C+V +L R+G+L++A   +  +P  P+ ++W +LLS    H + ++G  +A  ++++
Sbjct: 587 HYTCMVWLLGRSGHLDKAAKLVHEIPFEPSVMVWRALLSACVIHNDVELGRISAQRVLEI 646

Query: 515 APDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKS 574
            P+    +V+LSNIYA A +W  V+ +R  MK++G RK+PG S IE++G +H F VGD S
Sbjct: 647 EPEDEATHVLLSNIYANARRWGNVASIRTSMKRKGIRKEPGLSWIENQGRVHYFSVGDTS 706

Query: 575 HPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINV 634
           HP T  I+  L  +  K +  G+VPD + VLL +ED  +KE  L  HSERLA+A+GLI  
Sbjct: 707 HPDTKLINGMLEWLNMKARNEGYVPDFSSVLLDVED-VDKEQRLWVHSERLALAYGLIRT 765

Query: 635 KSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            S SP+RI+KNLR+C DCH+  KL+S I  R+II+RD +RFHHF  G CSC D+W
Sbjct: 766 PSISPLRIIKNLRICADCHAAIKLISKIVQRDIIIRDMNRFHHFHEGICSCGDYW 820



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 133/451 (29%), Positives = 220/451 (48%), Gaps = 17/451 (3%)

Query: 59  LLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFL 118
           LL+ YV    ++L  A  +FD +    + V +  LI+ Y    R  EA+ LF  L     
Sbjct: 85  LLNFYVK--YDSLPDAAKLFDEMPDRNT-VSFVTLIQGYSQCLRFSEAIGLFSRLQGEGH 141

Query: 119 LPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRR 178
             + F    V+K        K G  +H  V+KLGF  D FV ++L+  Y+  G  +  R+
Sbjct: 142 ELNPFVFSTVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQ 201

Query: 179 VFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKC 232
           VFDA++ KD+VSW  ++  YV+    E ++KLF  M      P+   F++  ++      
Sbjct: 202 VFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNN--FTFASVLKACVGL 259

Query: 233 GKVEIAREI----FYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMI 288
               + + +    F       L     +I+ Y+K+GDVD A ++F++M   D+I W+ MI
Sbjct: 260 EVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMI 319

Query: 289 AGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFV 348
           A Y  + +  EA+E+   M  G VLPN  TL S L A A L  L  G  +H ++VK G  
Sbjct: 320 ARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLD 379

Query: 349 VDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKM 408
           ++  +   L+ MY+KCG +E++L +F          W  +IVG    G   +AL LF  M
Sbjct: 380 MNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDM 439

Query: 409 CRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGY 468
               ++ T +T+  VL AC+    +  G +  ++ +     + T+     L+D+  + G 
Sbjct: 440 LECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIYDKNTVVG-NALIDMYAKCGN 498

Query: 469 LEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
           +++A+   + M    + V W +++SG   HG
Sbjct: 499 IKDARLVFD-MLREHDQVSWNAMISGYSVHG 528



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 104/391 (26%), Positives = 176/391 (45%), Gaps = 45/391 (11%)

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK----DLVSWNCLIDGYVKKGEVEVAMKL 210
           F+ ++  SL+    + G+   G+ +   +  K    DL + N L++ YVK   +  A KL
Sbjct: 42  FNTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVKYDSLPDAAKL 101

Query: 211 FDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRN--------------LVS--W- 253
           FDEMPDR+  S+  L+ G+S+C +   A  +F R+                  LVS  W 
Sbjct: 102 FDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEWA 161

Query: 254 ----------------------NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGY 291
                                  A+I+ Y   G  + A ++FD +E +D+++W  M+A Y
Sbjct: 162 KLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACY 221

Query: 292 ELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDG 351
             N  F E+L+L   M I    PN+ T  S L A  GL V N G+ +H    K  ++ + 
Sbjct: 222 VENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEEL 281

Query: 352 VLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRM 411
            +G  LI +Y K G ++ AL VF  + K  V  W+ MI        + +A+++F +M R 
Sbjct: 282 FVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRG 341

Query: 412 GMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEE 471
            + P   T   +L AC+    +  G +  +  +   G++  +     L+D+  + G +E 
Sbjct: 342 LVLPNQFTLASLLQACASLVDLQLGNQ-IHCHVVKVGLDMNVFVSNALMDMYAKCGRMEN 400

Query: 472 AKSTIESMPMRPNFVIWMSLLSGARNHGNKD 502
           +       P   + V W +++ G    GN +
Sbjct: 401 SLQLFSESPNCTD-VSWNTVIVGYVQAGNGE 430



 Score = 42.7 bits (99), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 3/104 (2%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYV 98
           Q+H+LSVKT    ++ + + L+ +Y      N+  AR +FD + +H   V +N +I  Y 
Sbjct: 469 QIHSLSVKTIYDKNTVVGNALIDMYAK--CGNIKDARLVFDMLREHDQ-VSWNAMISGYS 525

Query: 99  FNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGK 142
            +    EAL  F  +L+    PD  T   ++   +  G +  G+
Sbjct: 526 VHGLYGEALKTFESMLETECKPDKVTFVGILSACSNAGLLDRGQ 569


>gi|414885893|tpg|DAA61907.1| TPA: hypothetical protein ZEAMMB73_945776 [Zea mays]
          Length = 584

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 212/468 (45%), Positives = 300/468 (64%), Gaps = 3/468 (0%)

Query: 225 LVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMK-AGDVDSACELFDDMEIRDLIT 283
           LV  ++ CG +  AR +F    + ++V+WN ++ GY +  GD D   + F  M  RD ++
Sbjct: 117 LVHAYAVCGMLPHARRVFDGGTDNDMVAWNCLLRGYAQEGGDEDLLRDFFARMPSRDSVS 176

Query: 284 WNSMIAGYELNGRFMEALELLETMLIG-DVLPNDATLVSALSAVAGLAVLNKGRWMHSYI 342
           WN++++   +NG + EA+ +   ML   +  P+  TLVS +SA+A L  L  G W H+Y+
Sbjct: 177 WNTVLSWCVVNGEYDEAIAVFREMLASQECQPDRVTLVSVVSAIAYLGALAHGLWAHAYV 236

Query: 343 VKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS-KKKVGHWTAMIVGLGMHGMATQA 401
            +    V+  L + LI MYSKCG IE A+ VF  +  K+ +  W AM+ G   +G + +A
Sbjct: 237 FRKCIEVEEKLSSALINMYSKCGFIEGAVYVFDNVGGKRSLDTWNAMLAGFTANGYSERA 296

Query: 402 LDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVD 461
           L+LF +M    + P  ITF  VLNACSH GLV +G +YF  M   YGIEP I HYGC+VD
Sbjct: 297 LELFTRMESTRLMPNKITFNTVLNACSHGGLVEEGMKYFQRMSRFYGIEPDIAHYGCMVD 356

Query: 462 ILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGC 521
           + CR G  E+A+  I++MPM P+  +  +LL   R H N ++G+   + LI+ A +    
Sbjct: 357 LFCRAGMFEKAEEIIQTMPMEPDASMLKALLGACRTHKNLELGKKVGHRLIEAAANDHAG 416

Query: 522 YVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEI 581
           YV+LSNIYA  G W  V +VR++M  RG  K PGSSS+E  GV+HEF+ GDKSH +  +I
Sbjct: 417 YVLLSNIYALDGNWGGVHKVRKLMLDRGVLKTPGSSSVELNGVIHEFISGDKSHSRKRDI 476

Query: 582 HSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIR 641
           +  L E+  +LK++G+ PDT+QVLL I+D+  KE+ L  HSE+LAIAFGLI+    +PIR
Sbjct: 477 YKMLGEICQQLKSSGYTPDTSQVLLDIDDEDVKESSLALHSEKLAIAFGLISTAPGTPIR 536

Query: 642 IVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           +V NLR+C DCH+  KL+S IY R IIVRD +RFHHF+ GSCSC D+W
Sbjct: 537 VVNNLRICGDCHNAIKLISKIYGRCIIVRDANRFHHFRKGSCSCGDYW 584



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 133/318 (41%), Gaps = 44/318 (13%)

Query: 104 HEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGF-GFDKFVLSS 162
           H AL LF  LL     PD           AR        Q+H    K G     + V   
Sbjct: 57  HLALRLFDHLLRSGADPDPAAYELAFASCARARDRATAAQLHAHAAKRGLVASHRRVRCR 116

Query: 163 LVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMK-LFDEMPDRDLFS 221
           LV  YA  G +   RRVFD   D D+V+WNCL+ GY ++G  E  ++  F  MP RD  S
Sbjct: 117 LVHAYAVCGMLPHARRVFDGGTDNDMVAWNCLLRGYAQEGGDEDLLRDFFARMPSRDSVS 176

Query: 222 WTCLVDGFSKCGKVEIAREIFYRM-------PNR-NLVS---------------W----- 253
           W  ++      G+ + A  +F  M       P+R  LVS               W     
Sbjct: 177 WNTVLSWCVVNGEYDEAIAVFREMLASQECQPDRVTLVSVVSAIAYLGALAHGLWAHAYV 236

Query: 254 ------------NAMINGYMKAGDVDSACELFDDM-EIRDLITWNSMIAGYELNGRFMEA 300
                       +A+IN Y K G ++ A  +FD++   R L TWN+M+AG+  NG    A
Sbjct: 237 FRKCIEVEEKLSSALINMYSKCGFIEGAVYVFDNVGGKRSLDTWNAMLAGFTANGYSERA 296

Query: 301 LELLETMLIGDVLPNDATLVSALSAVAGLAVLNKG-RWMHSYIVKNGFVVDGVLGTLLIQ 359
           LEL   M    ++PN  T  + L+A +   ++ +G ++        G   D      ++ 
Sbjct: 297 LELFTRMESTRLMPNKITFNTVLNACSHGGLVEEGMKYFQRMSRFYGIEPDIAHYGCMVD 356

Query: 360 MYSKCGSIESALTVFRAI 377
           ++ + G  E A  + + +
Sbjct: 357 LFCRAGMFEKAEEIIQTM 374



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 103/215 (47%), Gaps = 12/215 (5%)

Query: 75  RSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL-DRFLLPDNFTLPCVIKGAA 133
           R  F R+    S V +N ++   V N    EA+ +F ++L  +   PD  TL  V+   A
Sbjct: 163 RDFFARMPSRDS-VSWNTVLSWCVVNGEYDEAIAVFREMLASQECQPDRVTLVSVVSAIA 221

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK-DLVSWN 192
            LGA+  G   H  VF+     ++ + S+L++MY+K G I+    VFD +  K  L +WN
Sbjct: 222 YLGALAHGLWAHAYVFRKCIEVEEKLSSALINMYSKCGFIEGAVYVFDNVGGKRSLDTWN 281

Query: 193 CLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMP-- 246
            ++ G+   G  E A++LF  M    L     ++  +++  S  G VE   + F RM   
Sbjct: 282 AMLAGFTANGYSERALELFTRMESTRLMPNKITFNTVLNACSHGGLVEEGMKYFQRMSRF 341

Query: 247 ---NRNLVSWNAMINGYMKAGDVDSACELFDDMEI 278
                ++  +  M++ + +AG  + A E+   M +
Sbjct: 342 YGIEPDIAHYGCMVDLFCRAGMFEKAEEIIQTMPM 376


>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
          Length = 694

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 230/557 (41%), Positives = 329/557 (59%), Gaps = 25/557 (4%)

Query: 139 KEGKQIHGLVFKLGFGFDKFVLSSLVSMYA--KFGEIDLGRRVFDAMDDKDLVSWNCLID 196
           K+ KQIH  + + G  FD F  S L++  A   F  +D  ++VFD +   +L +WN LI 
Sbjct: 49  KQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIR 108

Query: 197 GYVKKGEVEVAMKLFDEM----PD-RDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLV 251
            Y        ++ +F  M    PD  D F++  L+   S+  ++   +  F+ M  + L+
Sbjct: 109 AYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKA-FHGMVIKVLL 167

Query: 252 S-----WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLET 306
                  N++I+ Y K G++     +F +   RD+++WNSMI  +   G   EALEL + 
Sbjct: 168 GSDVFILNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITAFVQGGCPEEALELFQE 227

Query: 307 MLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGS 366
           M   +V PN  T+V  LSA A  +    GRW+HSYI +N       L   ++ MY+KCGS
Sbjct: 228 METQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIXESLTLSNAMLDMYTKCGS 287

Query: 367 IESALTVFRAISKKKVGHWTAMIVG------------LGMHGMATQALDLFNKMCRMGMK 414
           +E A  +F  + +K +  WT M+VG            L MHG    A+ LF+KM    +K
Sbjct: 288 VEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGLAMHGHGKDAIALFSKMQEDKVK 347

Query: 415 PTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKS 474
           P A+TF  +L ACSH GLV +GR +FN M   YG+ P ++HY C+VDIL R G LEEA  
Sbjct: 348 PNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVE 407

Query: 475 TIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQ 534
            IE MPM P   +W +LL     H N  + E A + LI++ P   G YV+LSNIYA AG+
Sbjct: 408 LIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGK 467

Query: 535 WDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKA 594
           WD+VS +R++M+  G +K+PG SSIE  G++HEF+VGD SHP   +I++KL E+  +L+ 
Sbjct: 468 WDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPSAKKIYAKLDEIVARLET 527

Query: 595 AGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHS 654
            G+VP+ + +L  +E++  KE  L  HSE+LAIAFGLI+     PIRIVKNLRVC DCHS
Sbjct: 528 IGYVPNKSHLLQLVEEEDVKEQALFLHSEKLAIAFGLISTGQSQPIRIVKNLRVCGDCHS 587

Query: 655 VTKLLSGIYNREIIVRD 671
           V KL+S +Y+REI++RD
Sbjct: 588 VAKLVSKLYDREILLRD 604



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 131/418 (31%), Positives = 205/418 (49%), Gaps = 55/418 (13%)

Query: 32  STHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYN 91
           S  K+ +Q+HA  ++T L +    +SRL++        +L YA+ +FD+I  HP+L  +N
Sbjct: 46  SETKQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQI-PHPNLYTWN 104

Query: 92  LLIKCYVFNQRSHEALTLFCDLLDRFL-LPDNFTLPCVIKGAARLGAIKEGKQIHGLVFK 150
            LI+ Y  +   H++L +F  +L +    PD FT P +IK A+ L  +  GK  HG+V K
Sbjct: 105 TLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIK 164

Query: 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
           +  G D F+L+SL+  YAK GE+ LG RVF     +D+VSWN +I  +V+ G  E A++L
Sbjct: 165 VLLGSDVFILNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITAFVQGGCPEEALEL 224

Query: 211 FDEMPDRDL-FSWTCLVDGFSKCGK---VEIAREIF-YRMPNR---NLVSWNAMINGYMK 262
           F EM  +++  +   +V   S C K    E  R +  Y   NR   +L   NAM++ Y K
Sbjct: 225 FQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIXESLTLSNAMLDMYTK 284

Query: 263 AGDVDSACELFDDMEIRDLITWNSMIAGY------------ELNGRFMEALELLETMLIG 310
            G V+ A  LFD M  +D+++W +M+ GY             ++G   +A+ L   M   
Sbjct: 285 CGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGLAMHGHGKDAIALFSKMQED 344

Query: 311 DVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESA 370
            V PN  T  + L A + + ++ +GR                  T   QM    G +   
Sbjct: 345 KVKPNAVTFTNILCACSHVGLVEEGR------------------TFFNQMELVYGVLPG- 385

Query: 371 LTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACS 428
                      V H+  M+  LG  G+  +A++L  K   M M P A  +  +L AC+
Sbjct: 386 -----------VKHYACMVDILGRAGLLEEAVELIEK---MPMAPAASVWGALLGACT 429


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 242/702 (34%), Positives = 372/702 (52%), Gaps = 82/702 (11%)

Query: 69  NNLHYARSIFDRILQ-HPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDR-FLLPDNFTLP 126
             L  A S FD + Q     VL+N +I  Y     +  A+ +F  LL    L PD+++  
Sbjct: 102 GRLPAAVSFFDAVPQARRDTVLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFT 161

Query: 127 CVIKGAARLG--AIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDL---GRRVFD 181
            ++  A  L   +++   Q+   V K G G    V ++LV++Y K   ++     R+V D
Sbjct: 162 ALLSAAGHLPNISVRHCAQLQCSVLKSGAGGVLSVSNALVALYMKCEALEATRDARKVLD 221

Query: 182 AMDDKDLVSW-------------------------------NCLIDGYVKKGEVEVAMKL 210
            M DKD ++W                               N +I GYV  G V  A +L
Sbjct: 222 EMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAFEL 281

Query: 211 FDEM-------------------------------------------PDRDLFSWTCLVD 227
           F  M                                           P+  L     LV 
Sbjct: 282 FRRMVLERVPLDEFTFTSVLSACANAGFFAHGKSVHGQITRLQPNFVPEAALPVNNALVT 341

Query: 228 GFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSM 287
            +SKCG + +AR IF  M ++++VSWN +++GY+++  +D A E+F++M  ++ ++W  M
Sbjct: 342 LYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVM 401

Query: 288 IAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGF 347
           ++GY   G   +AL+L   M   DV P D T   A+SA   L  L  G+ +H ++V+ GF
Sbjct: 402 VSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACGELGSLKHGKQLHGHLVQLGF 461

Query: 348 VVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNK 407
                 G  LI MY++CG+++ A  +F  +       W AMI  LG HG   +AL+LF++
Sbjct: 462 EGSNSAGNALITMYARCGAVKEANLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDR 521

Query: 408 MCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTG 467
           M   G+ P  I+F+ VL AC+H+GLV++G +YF  M  D+GI P  +HY  L+D+L R G
Sbjct: 522 MVAEGIYPDRISFLTVLTACNHSGLVDEGFQYFESMKRDFGIIPGEDHYTRLIDLLGRAG 581

Query: 468 YLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSN 527
            + EA+  I++MP  P   IW ++LSG R  G+ ++G +AA+ L K+ P   G Y++LSN
Sbjct: 582 RIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSN 641

Query: 528 IYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSE 587
            Y+AAG+W   + VR++M+ RG +K+PG S IE    +H FVVGD  HP+  +++  L  
Sbjct: 642 TYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHVFVVGDTKHPEAHKVYKFLEM 701

Query: 588 MRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLR 647
           +  +++  G+VPDT  VL  +E   +KE  L  HSERLA+ FGL+ +   + + ++KNLR
Sbjct: 702 VGARMRKLGYVPDTKVVLHDMEPH-QKEHILFAHSERLAVGFGLLKLPPGATVTVLKNLR 760

Query: 648 VCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           +C+DCH+V   +S    REI+VRD  RFHHFK+G CSC ++W
Sbjct: 761 ICDDCHAVMMFMSKAVGREIVVRDVRRFHHFKDGECSCGNYW 802


>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 224/625 (35%), Positives = 363/625 (58%), Gaps = 32/625 (5%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           A  +FD++     ++ +N +I  YV N  +   L ++  ++   +  D  T+  V+ G A
Sbjct: 204 ASELFDKLCDR-DVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCA 262

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
             G +  GK +H L  K  F       ++L+ MY+K G++D   RVF+ M ++++VSW  
Sbjct: 263 NSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTS 322

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRN 249
           +I GY + G  + A+ L  +M       D+ + T ++   ++ G ++  +++   +   N
Sbjct: 323 MIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANN 382

Query: 250 LVS----WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLE 305
           + S     NA+++ Y K G ++ A  +F  M ++D+I+WN+M+                 
Sbjct: 383 MASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMV----------------- 425

Query: 306 TMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCG 365
               G++ P+  T+   L A A L+ L +G+ +H YI++NG+  D  +   L+ +Y KCG
Sbjct: 426 ----GELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCG 481

Query: 366 SIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN 425
            +  A  +F  I  K +  WT MI G GMHG   +A+  FN+M   G++P  ++FI +L 
Sbjct: 482 VLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILY 541

Query: 426 ACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNF 485
           ACSH+GL+  G R+F +M ND+ IEP +EHY C+VD+L RTG L +A   IE++P+ P+ 
Sbjct: 542 ACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDA 601

Query: 486 VIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMM 545
            IW +LL G R + + ++ E  A  + ++ P+  G YV+L+NIYA A + ++V  +RE +
Sbjct: 602 TIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKREEVKRMREKI 661

Query: 546 KKRGFRKDPGSSSIEHRGVLHEFVVG-DKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQV 604
            K+G RK+PG S IE +G ++ FV G + SHP + +I S L +MR K+K  G+ P T   
Sbjct: 662 GKKGLRKNPGCSWIEIKGRVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKYA 721

Query: 605 LLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYN 664
           L+   D+ +KE  L  HSE+LA+AFGL+ +  R  IR+ KNLRVC DCH + K +S    
Sbjct: 722 LI-NADEMQKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETR 780

Query: 665 REIIVRDNSRFHHFKNGSCSCKDFW 689
           REI++RD++RFHHFK+G CSC+ FW
Sbjct: 781 REIVLRDSNRFHHFKDGYCSCRGFW 805



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 83/288 (28%), Positives = 145/288 (50%), Gaps = 22/288 (7%)

Query: 225 LVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDV------------------ 266
           LV  ++ CG ++  R +F  M  +N+  WN M++ Y K GD                   
Sbjct: 140 LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGK 199

Query: 267 --DSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS 324
             +SA ELFD +  RD+I+WNSMI+GY  NG     L + + M+   +  + AT++S L 
Sbjct: 200 RPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLV 259

Query: 325 AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGH 384
             A    L+ G+ +HS  +K+ F         L+ MYSKCG ++ AL VF  + ++ V  
Sbjct: 260 GCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVS 319

Query: 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMI 444
           WT+MI G    G +  A+ L  +M + G+K   +    +L+AC+ +G +++G+   +  I
Sbjct: 320 WTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHD-YI 378

Query: 445 NDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLL 492
               +   +     L+D+  + G +E A S   +M ++ + + W +++
Sbjct: 379 KANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVK-DIISWNTMV 425



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 118/325 (36%), Gaps = 87/325 (26%)

Query: 229 FSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMI 288
           F  C  V I+     R  +  +  +NA I  + + GD+++A EL              M 
Sbjct: 46  FRSCIPVRISATP-TRTIDHQVTDYNAKILHFCQLGDLENAMELV------------CMC 92

Query: 289 AGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFV 348
              E           LET   G V          L   AGL  L  G+ +HS I  N   
Sbjct: 93  QKSE-----------LETKTYGSV----------LQLCAGLKSLTDGKKVHSIIKSNSVG 131

Query: 349 VDGVLGTLLIQMYSKCGSIESALTVFRAISKK-------------KVG------------ 383
           VD  LG  L+  Y+ CG ++    VF  + KK             K+G            
Sbjct: 132 VDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIM 191

Query: 384 --------------------------HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA 417
                                      W +MI G   +G+  + L ++ +M  +G+    
Sbjct: 192 VEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDL 251

Query: 418 ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIE 477
            T I VL  C+++G ++ G+   ++ I     E  I     L+D+  + G L+ A    E
Sbjct: 252 ATIISVLVGCANSGTLSLGKAVHSLAIKS-SFERRINFSNTLLDMYSKCGDLDGALRVFE 310

Query: 478 SMPMRPNFVIWMSLLSGARNHGNKD 502
            M  R N V W S+++G    G  D
Sbjct: 311 KMGER-NVVSWTSMIAGYTRDGWSD 334


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 236/625 (37%), Positives = 358/625 (57%), Gaps = 12/625 (1%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDR-FLLPDNFTLPCVIKGA 132
           AR +FDR+      V +N L+  Y  N  +  A+ +   + +     PD+ TL  V+   
Sbjct: 113 ARRVFDRMPVRDR-VAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPAC 171

Query: 133 ARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWN 192
           A   A+   ++ H    + G      V ++++  Y K G+I   R VFD M  K+ VSWN
Sbjct: 172 ANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWN 231

Query: 193 CLIDGYVKKGEVEVAMKLFDEMPDRDL-FSWTCLVDGFSKCGKVEI------AREIFYRM 245
            +IDGY + G+   A+ LF+ M +  +  +   ++     CG++          E+  R+
Sbjct: 232 AMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRI 291

Query: 246 P-NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELL 304
             + N+   NA+I  Y K   VD A  +FD+++ R  ++WN+MI G   NG   +A+ L 
Sbjct: 292 GLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLF 351

Query: 305 ETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKC 364
             M + +V P+  TLVS + A+A ++   + RW+H Y ++     D  + T LI MY+KC
Sbjct: 352 TRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKC 411

Query: 365 GSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVL 424
           G +  A  +F +  ++ V  W AMI G G HG    A++LF +M  +G+ P   TF+ VL
Sbjct: 412 GRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVL 471

Query: 425 NACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPN 484
           +ACSHAGLV++GR YF  M  DYG+EP +EHYG +VD+L R G L+EA + I+ MPM P 
Sbjct: 472 SACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPG 531

Query: 485 FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREM 544
             ++ ++L   + H N ++ E +A  + ++ P     +V+L+NIYA A  W  V+ VR  
Sbjct: 532 LSVYGAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTA 591

Query: 545 MKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQV 604
           M+K G +K PG S I+ +  +H F  G  +H Q  EI+S+L+++  ++KA G+VPDT  +
Sbjct: 592 MEKNGLQKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLIEEIKAVGYVPDTDSI 651

Query: 605 LLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYN 664
               +D K +   L  HSE+LAIAFGLI     + I+I KNLRVCNDCH+ TKL+S +  
Sbjct: 652 HDVEDDVKAQ--LLNTHSEKLAIAFGLIRTAPGTTIQIKKNLRVCNDCHNATKLISLVTG 709

Query: 665 REIIVRDNSRFHHFKNGSCSCKDFW 689
           REII+RD  RFHHFK+G CSC D+W
Sbjct: 710 REIIMRDIQRFHHFKDGKCSCGDYW 734



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 130/506 (25%), Positives = 208/506 (41%), Gaps = 88/506 (17%)

Query: 106 ALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVS 165
           AL  F  +      P   T   ++K  A  G +  G+ +H  +   G   +    ++L +
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 166 MYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLF-------DEMPDR- 217
           MYAK       RRVFD M  +D V+WN L+ GY + G   +AM++         E PD  
Sbjct: 103 MYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSI 162

Query: 218 DLFS--------------------------------WTCLVDGFSKCGKVEIAREIFYRM 245
            L S                                 T ++D + KCG +  AR +F  M
Sbjct: 163 TLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWM 222

Query: 246 PNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLE 305
           P +N VSWNAMI+GY + GD                                 EAL L  
Sbjct: 223 PTKNSVSWNAMIDGYAQNGDS-------------------------------REALALFN 251

Query: 306 TMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCG 365
            M+   V   D ++++AL A   L  L++G  +H  +V+ G   +  +   LI MYSKC 
Sbjct: 252 RMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCK 311

Query: 366 SIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN 425
            ++ A  VF  + ++    W AMI+G   +G +  A+ LF +M    +KP + T + V+ 
Sbjct: 312 RVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIP 371

Query: 426 ACSHAGLVNDGRRYFNMMINDYGIEPTIEH----YGCLVDILCRTGYLEEAKSTIESMPM 481
           A +        R      I+ Y I   ++        L+D+  + G +  A+    S   
Sbjct: 372 ALADISDPLQAR-----WIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARE 426

Query: 482 RPNFVIWMSLLSGARNH--GNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVS 539
           R + + W +++ G  +H  G   +  +     I + P+      VLS   + AG  D+  
Sbjct: 427 R-HVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSAC-SHAGLVDEGR 484

Query: 540 EVREMMKKRGFRKDPGSSSIEHRGVL 565
           E    MK+  +  +PG   +EH G +
Sbjct: 485 EYFTSMKE-DYGLEPG---MEHYGTM 506


>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
          Length = 485

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 212/444 (47%), Positives = 295/444 (66%), Gaps = 2/444 (0%)

Query: 247 NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLET 306
           + NL   NA+++ Y K  D++SA E+F+ +  +D+++W SM++G   +G F E+L L   
Sbjct: 43  DENLSVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRK 102

Query: 307 MLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGS 366
           M +  + P++ TLV  LSA A    L++G+++H  I K     D VL T L+ MY+KCGS
Sbjct: 103 MQLHKIEPDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGS 162

Query: 367 IESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNA 426
           I+ AL VFR +  + V  W AMI GL MHG    A+ LF++M    + P  +TFI +L A
Sbjct: 163 IDLALQVFRRMRVRNVFTWNAMIGGLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCA 222

Query: 427 CSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFV 486
           CSHAGLV++G   F  M N + IEP +EHYGC+VD+LCR   +++A + IE+MP++ N V
Sbjct: 223 CSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSV 282

Query: 487 IWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMK 546
           +W +LL   R+ G+ D+ E     +I++ PD+ G YV+LSN+YA   QWD   ++R+ MK
Sbjct: 283 LWATLLGACRSGGHFDLAEKIXRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMK 342

Query: 547 KRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKA-AGHVPDTTQVL 605
            +G  K PG S IE  G++H+FV GD+SH QT++I++ + EM  ++    GHVP T  VL
Sbjct: 343 NKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTRRVNLDGGHVPGTANVL 402

Query: 606 LCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNR 665
             IE++ EKE  L  HSE+LAIA GLI+  S SPIRIVKNLRVCNDCHS  K+ S +YNR
Sbjct: 403 FDIEEE-EKEHSLFLHSEKLAIALGLISTPSGSPIRIVKNLRVCNDCHSFLKVTSKVYNR 461

Query: 666 EIIVRDNSRFHHFKNGSCSCKDFW 689
           EI+ RD SRFHHFK GSCSC DFW
Sbjct: 462 EIVARDRSRFHHFKEGSCSCMDFW 485



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 133/259 (51%), Gaps = 9/259 (3%)

Query: 309 IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIE 368
           + ++ P++ T+VS + A A L  L +G+ +HSY  + G   +  +   ++ MY KC  IE
Sbjct: 4   LDNLRPDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIE 63

Query: 369 SALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACS 428
           SA  VF  I +K V  WT+M+ GL   G   ++L LF KM    ++P  IT +GVL+AC+
Sbjct: 64  SAQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACA 123

Query: 429 HAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIW 488
             G ++ G +Y +++I+ + I   +     LVD+  + G ++ A      M +R N   W
Sbjct: 124 QTGALDQG-KYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVR-NVFTW 181

Query: 489 MSLLSG--ARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMK 546
            +++ G     HG   I  +      K+ PD +  ++ L    + AG  D+   + + MK
Sbjct: 182 NAMIGGLAMHGHGEDAISLFDQMEXDKLMPDDV-TFIALLCACSHAGLVDEGLAMFQAMK 240

Query: 547 KRGFRKDPGSSSIEHRGVL 565
            + F+ +P    +EH G +
Sbjct: 241 NK-FQIEP---RMEHYGCV 255



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 110/233 (47%), Gaps = 43/233 (18%)

Query: 118 LLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGR 177
           L PD  T+  ++   A+LG ++ GK +H    +LG   +  V ++++ MY K  +I+  +
Sbjct: 7   LRPDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIESAQ 66

Query: 178 RVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDR-------------- 217
            VF+ + +KD++SW  ++ G  K G  + ++ LF +M      PD               
Sbjct: 67  EVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACAQTG 126

Query: 218 -------------------DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMIN 258
                              DL   T LVD ++KCG +++A ++F RM  RN+ +WNAMI 
Sbjct: 127 ALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNAMIG 186

Query: 259 GYMKAGDVDSACELFDDME----IRDLITWNSMIAGYELNGRFMEALELLETM 307
           G    G  + A  LFD ME    + D +T+ +++      G   E L + + M
Sbjct: 187 GLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAM 239



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 130/268 (48%), Gaps = 13/268 (4%)

Query: 40  LHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVF 99
           LH+ S +  L  +  +++ +L +Y     +++  A+ +F+RI +   ++ +  ++     
Sbjct: 33  LHSYSKELGLDENLSVNNAILDMYC--KCDDIESAQEVFNRI-REKDVLSWTSMLSGLAK 89

Query: 100 NQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFV 159
           +    E+L LF  +    + PD  TL  V+   A+ GA+ +GK IH L+ K     D  +
Sbjct: 90  SGYFQESLALFRKMQLHKIEPDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVL 149

Query: 160 LSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL 219
            ++LV MYAK G IDL  +VF  M  +++ +WN +I G    G  E A+ LFD+M    L
Sbjct: 150 ETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNAMIGGLAMHGHGEDAISLFDQMEXDKL 209

Query: 220 F----SWTCLVDGFSKCGKVEIAREIFYRMPNR-----NLVSWNAMINGYMKAGDVDSAC 270
                ++  L+   S  G V+    +F  M N+      +  +  +++   +A  VD A 
Sbjct: 210 MPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDAL 269

Query: 271 ELFDDMEIR-DLITWNSMIAGYELNGRF 297
              ++M I+ + + W +++      G F
Sbjct: 270 AFIENMPIKANSVLWATLLGACRSGGHF 297


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 231/657 (35%), Positives = 375/657 (57%), Gaps = 10/657 (1%)

Query: 40  LHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVF 99
           +H   +K+N      +++ L+++Y       +  A  +F+ +L     V +N L+   V 
Sbjct: 270 IHGAVLKSNHFADVYVANALIAMYAK--CGRMEDAGRVFESMLCR-DYVSWNTLLSGLVQ 326

Query: 100 NQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFV 159
           N+   +AL  F D+ +    PD  ++  +I  + R G + +GK++H    + G   +  +
Sbjct: 327 NELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGLDSNMQI 386

Query: 160 LSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP---- 215
            ++LV MYAK   +      F+ M +KDL+SW  +I GY +      A+ LF ++     
Sbjct: 387 GNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKGM 446

Query: 216 DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS---WNAMINGYMKAGDVDSACEL 272
           D D      ++   S        REI   +  R+L      NA++N Y + G +D A   
Sbjct: 447 DVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLADIMLQNAIVNVYGEVGHIDYARRA 506

Query: 273 FDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVL 332
           F+ +  +D+++W SMI     NG  +EALEL  ++   ++ P+   ++SALSA A L+ L
Sbjct: 507 FESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSL 566

Query: 333 NKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGL 392
            KG+ +H ++++ GF ++G + + L+ MY+ CG++E++  +F ++ ++ +  WT+MI   
Sbjct: 567 KKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINAN 626

Query: 393 GMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT 452
           GMHG   +A+ LF KM    + P  ITF+ +L ACSH+GL+ +G+R+F +M   Y +EP 
Sbjct: 627 GMHGCGNKAIALFKKMTDQNVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPW 686

Query: 453 IEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLI 512
            EHY C+VD+L R+  LEEA   + +MP++P+  IW +LL     H NK++GE AA  L+
Sbjct: 687 PEHYACMVDLLSRSNSLEEAYHFVRNMPIKPSSEIWCALLGACHIHSNKELGELAAKELL 746

Query: 513 KVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGD 572
           +   +  G Y ++SNI+AA G+W+ V EVR  MK  G +K+PG S IE    +H F+  D
Sbjct: 747 QSDTENSGKYALISNIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVDNKIHTFMARD 806

Query: 573 KSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLI 632
           KSHPQTD+I+ KL++    L+  G     T+ +     ++EK   L  HSERLA+ +GL+
Sbjct: 807 KSHPQTDDIYLKLAQFTKLLEKKGGYIAQTKFVFHNVSEEEKTQMLYGHSERLALGYGLL 866

Query: 633 NVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
                + IRI KNLR+C+DCH+  K+ S +  R ++VRD +RFHHF+ G CSC DFW
Sbjct: 867 VTPKGTCIRITKNLRICDDCHTFFKIASEVSQRPLVVRDANRFHHFERGLCSCGDFW 923



 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 152/580 (26%), Positives = 282/580 (48%), Gaps = 39/580 (6%)

Query: 2   QTQTLQHSSPIHALQQHLPSRL---HWNILKFSSTHK---ETQQLHALSVKTNLIYHSGI 55
           Q+ TL  + P+       PSRL   H  +L      K   + QQLHAL +K++L   + +
Sbjct: 29  QSLTLLSTHPLAT-----PSRLEHAHSLLLDLCVAAKALPQGQQLHALLLKSHL--SAFL 81

Query: 56  SSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLD 115
           +++L+ +Y      +L  A  +FD + +  ++  +N L+  +V + +  EA+ L+ D+  
Sbjct: 82  ATKLVLMY--GKCGSLRDAVKVFDEMSER-TIFSWNALMGAFVSSGKYLEAIELYKDMRV 138

Query: 116 RFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDL 175
             +  D  T P V+K    LG  + G +IHG+  K G+G   FV ++L++MY K G++  
Sbjct: 139 LGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGG 198

Query: 176 GRRVFDA--MDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD----RDLFSWTCLVDGF 229
            R +FD   M+ +D VSWN +I  +V +G    A+ LF  M +     + +++   + G 
Sbjct: 199 ARVLFDGIMMEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAALQGV 258

Query: 230 SKCGKVEIAREIFYRMPNRN----LVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWN 285
                V++   I   +   N    +   NA+I  Y K G ++ A  +F+ M  RD ++WN
Sbjct: 259 EDPSFVKLGMGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRVFESMLCRDYVSWN 318

Query: 286 SMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKN 345
           ++++G   N  + +AL     M      P+  ++++ ++A      L KG+ +H+Y ++N
Sbjct: 319 TLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRN 378

Query: 346 GFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLF 405
           G   +  +G  L+ MY+KC  ++     F  + +K +  WT +I G   +    +A++LF
Sbjct: 379 GLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLF 438

Query: 406 NKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIE---PTIEHYGCLVDI 462
            K+   GM    +    VL ACS  GL +   R F   I+ Y  +     I     +V++
Sbjct: 439 RKVQVKGMDVDPMMIGSVLRACS--GLKS---RNFIREIHGYVFKRDLADIMLQNAIVNV 493

Query: 463 LCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG--NKDIGEYAANNLIKVAPDTIG 520
               G+++ A+   ES+  + + V W S+++   ++G   + +  + +     + PD+I 
Sbjct: 494 YGEVGHIDYARRAFESIRSK-DIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIA 552

Query: 521 CYVVLSNIYAAAGQWDKVSEVREMMKKRG-FRKDPGSSSI 559
               LS   A      K  E+   + ++G F + P +SS+
Sbjct: 553 IISALSAT-ANLSSLKKGKEIHGFLIRKGFFLEGPIASSL 591



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 143/530 (26%), Positives = 254/530 (47%), Gaps = 24/530 (4%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRIL-QHPSLVLYNLLIKCY 97
           ++H ++VK        + + L+++Y      +L  AR +FD I+ +    V +N +I  +
Sbjct: 166 EIHGVAVKCGYGEFVFVCNALIAMY--GKCGDLGGARVLFDGIMMEKEDTVSWNSIISAH 223

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
           V      EAL+LF  + +  +  + +T    ++G      +K G  IHG V K     D 
Sbjct: 224 VAEGNCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFADV 283

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
           +V ++L++MYAK G ++   RVF++M  +D VSWN L+ G V+      A+  F +M + 
Sbjct: 284 YVANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNS 343

Query: 218 ----DLFSWTCLVDGFSKCGKVEIAREIF-YRMPN---RNLVSWNAMINGYMKAGDVDSA 269
               D  S   L+    + G +   +E+  Y + N    N+   N +++ Y K   V   
Sbjct: 344 GQKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYM 403

Query: 270 CELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGL 329
              F+ M  +DLI+W ++IAGY  N   +EA+ L   + +  +  +   + S L A +GL
Sbjct: 404 GHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGL 463

Query: 330 AVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMI 389
              N  R +H Y+ K   + D +L   ++ +Y + G I+ A   F +I  K +  WT+MI
Sbjct: 464 KSRNFIREIHGYVFKRD-LADIMLQNAIVNVYGEVGHIDYARRAFESIRSKDIVSWTSMI 522

Query: 390 VGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIND-YG 448
                +G+  +AL+LF  + +  ++P +I  I  L+A ++   +  G+     +I   + 
Sbjct: 523 TCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFF 582

Query: 449 IEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNH--GNKDIGEY 506
           +E  I     LVD+    G +E ++    S+  R + ++W S+++    H  GNK I  +
Sbjct: 583 LEGPIA--SSLVDMYACCGTVENSRKMFHSVKQR-DLILWTSMINANGMHGCGNKAIALF 639

Query: 507 AANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVR--EMMKKRGFRKDP 554
                  V PD I     L+ +YA +     V   R  E+M K G++ +P
Sbjct: 640 KKMTDQNVIPDHI---TFLALLYACSHSGLMVEGKRFFEIM-KYGYQLEP 685


>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 607

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 224/605 (37%), Positives = 340/605 (56%), Gaps = 43/605 (7%)

Query: 127 CVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSM--YAKFGEIDLGRRVFDAMD 184
           C +       ++ E KQ H L+ +LG   +   +S + +    +K G+I+   ++F  + 
Sbjct: 4   CWVPPPWACSSMAEVKQQHSLLLRLGLSTNNHAMSRIFTFCSLSKHGDINYALKLFTTLP 63

Query: 185 DKDLVSWNCLIDGYVKKGEVEV--------------------------AMKLFDEMPD-- 216
           + D   +N L   +    +                             A KL +E     
Sbjct: 64  NPDTFLYNTLFKAFFSLSQTPSLSLLFYSHMLQHCVTPNAFTFPSLIRACKLEEEAKQLH 123

Query: 217 ---------RDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVD 267
                     D ++   L+  +   G ++ AR +F  M + N+VSW ++++GY + G VD
Sbjct: 124 AHVLKFGFGGDTYALNNLIHVYFAFGSLDDARRVFCTMSDPNVVSWTSLVSGYSQWGLVD 183

Query: 268 SACELFDDMEIR-DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSA-LSA 325
            A  +F+ M  + + ++WN+MIA +    RF EA  L   M +   +  D  + +  LSA
Sbjct: 184 EAFRVFELMPCKKNSVSWNAMIACFVKGNRFREAFALFRRMRVEKKMELDRFVAATMLSA 243

Query: 326 VAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHW 385
             G+  L +G W+H Y+ K G V+D  L T +I MY KCG ++ A  VF  +  K+V  W
Sbjct: 244 CTGVGALEQGMWIHKYVEKTGIVLDSKLATTIIDMYCKCGCLDKAFHVFCGLKVKRVSSW 303

Query: 386 TAMIVGLGMHGMATQALDLFNKMCRMGM-KPTAITFIGVLNACSHAGLVNDGRRYFNMMI 444
             MI G  MHG    A+ LF +M    M  P +ITF+ VL AC+H+GLV +G  YF  M+
Sbjct: 304 NCMIGGFAMHGKGEDAIRLFKEMEEEAMVAPDSITFVNVLTACAHSGLVEEGWYYFRYMV 363

Query: 445 NDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIG 504
           + +GI+PT EHYGC+VD+L R G LEEAK  I+ MPM P+  +  +LL   R HGN ++G
Sbjct: 364 DVHGIDPTKEHYGCMVDLLARAGRLEEAKKVIDEMPMSPDAAVLGALLGACRIHGNLELG 423

Query: 505 EYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGV 564
           E   N +I++ P+  G YV+L N+YA+ G+W++V+ VR++M  RG +K+PG S IE  GV
Sbjct: 424 EEVGNRVIELDPENSGRYVILGNMYASCGKWEQVAGVRKLMDDRGVKKEPGFSMIEMEGV 483

Query: 565 LHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSER 624
           ++EFV G + HP  + I++K+ EM   ++  G VPDT  VL  + ++ E+E  L  HSE+
Sbjct: 484 VNEFVAGGRDHPLAEAIYAKIYEMLESIRVVGFVPDTDGVLHDLVEE-ERENPLFYHSEK 542

Query: 625 LAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCS 684
           LAIA+GL+  K    +R+ KNLRVC DCH  +K++S +Y+ +II+RD SRFHHF NG CS
Sbjct: 543 LAIAYGLLKTKRGETLRVTKNLRVCKDCHQASKMISKVYDCDIIIRDRSRFHHFSNGECS 602

Query: 685 CKDFW 689
           CKD+W
Sbjct: 603 CKDYW 607



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 113/234 (48%), Gaps = 12/234 (5%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDL-LDRFLLPDNFTLPCVIKGA 132
           A  +F+ +    + V +N +I C+V   R  EA  LF  + +++ +  D F    ++   
Sbjct: 185 AFRVFELMPCKKNSVSWNAMIACFVKGNRFREAFALFRRMRVEKKMELDRFVAATMLSAC 244

Query: 133 ARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWN 192
             +GA+++G  IH  V K G   D  + ++++ MY K G +D    VF  +  K + SWN
Sbjct: 245 TGVGALEQGMWIHKYVEKTGIVLDSKLATTIIDMYCKCGCLDKAFHVFCGLKVKRVSSWN 304

Query: 193 CLIDGYVKKGEVEVAMKLFDEMPDR-----DLFSWTCLVDGFSKCGKVEIAREIFYRMPN 247
           C+I G+   G+ E A++LF EM +      D  ++  ++   +  G VE     F  M +
Sbjct: 305 CMIGGFAMHGKGEDAIRLFKEMEEEAMVAPDSITFVNVLTACAHSGLVEEGWYYFRYMVD 364

Query: 248 RNLVS-----WNAMINGYMKAGDVDSACELFDDMEIR-DLITWNSMIAGYELNG 295
            + +      +  M++   +AG ++ A ++ D+M +  D     +++    ++G
Sbjct: 365 VHGIDPTKEHYGCMVDLLARAGRLEEAKKVIDEMPMSPDAAVLGALLGACRIHG 418


>gi|302812982|ref|XP_002988177.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
 gi|300143909|gb|EFJ10596.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
          Length = 742

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/667 (34%), Positives = 386/667 (57%), Gaps = 19/667 (2%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYV 98
           ++H + V + L     +S+ LL++Y      +L +A+ +F ++ +  +++ ++++   + 
Sbjct: 79  RIHQMVVDSRLEIDPKVSNALLNMY--KKCGSLSHAKRVFAKMERTRNVISWSIMAGAHA 136

Query: 99  FNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKF 158
            +    EAL  F  +L   +      +  ++   +    +++G+ IH  +   GF  +  
Sbjct: 137 LHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRMIHSCIALSGFESELL 196

Query: 159 VLSSLVSMYAKFGEIDLGRRVFDAMDD--KDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD 216
           V +++++MY + G ++  R+VFDAMD+  +D+VSWN ++  YV     + A++L+  M  
Sbjct: 197 VANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVHNDRGKDAIQLYQRMQL 256

Query: 217 R-DLFSWTCLVDGFSKCGKVEIAREIFYRMPN----RNLVSWNAMINGYMKAGDVDSACE 271
           R D  ++  L+   S    V + R +  ++ N    +N++  NA+++ Y K G    A  
Sbjct: 257 RPDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARA 316

Query: 272 LFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGD-------VLPNDATLVSALS 324
           +FD ME R +I+W ++I+ Y       EA  L + ML  +       V P+    V+ L+
Sbjct: 317 VFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILN 376

Query: 325 AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAI-SKKKVG 383
           A A ++ L +G+ +       G   D  +GT ++ +Y KCG IE A  +F A+ S+  V 
Sbjct: 377 ACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEARRIFDAVCSRPDVQ 436

Query: 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMM 443
            W AMI      G + +AL LF +M   G++P + +F+ +L ACSH GL + G+ YF  M
Sbjct: 437 LWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSILLACSHTGLEDQGKSYFTSM 496

Query: 444 INDY-GIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKD 502
             +Y  +  TI+H+GC+ D+L R G L+EA+  +E +P++P+ V W SLL+  RNH +  
Sbjct: 497 TTEYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKLPVKPDAVAWTSLLAACRNHRDLK 556

Query: 503 IGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHR 562
             +  AN L+++ P     YV LSNIYA   +W  V++VR+ M ++G +K+ G S+IE  
Sbjct: 557 RAKEVANKLLRLEPRCATGYVALSNIYAELQKWHAVAKVRKFMAEQGVKKERGVSTIEIG 616

Query: 563 GVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHS 622
             +H+F  GD +HP+  EI  +L+++ +++K  G+VPDT  VL  + D++EKE  L +HS
Sbjct: 617 KYMHDFATGDDAHPRNREIREELAKLHSQMKECGYVPDTKMVLHFV-DEQEKERLLFSHS 675

Query: 623 ERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGS 682
           ERLAIA GLI+    +P+R+ KNLRVC+DCH+ TKL+S I  R+I+VRD +RFH FK+G 
Sbjct: 676 ERLAIALGLISTPLGTPLRVTKNLRVCSDCHTATKLISKIAGRKIVVRDPTRFHLFKDGK 735

Query: 683 CSCKDFW 689
           CSC+D+W
Sbjct: 736 CSCQDYW 742



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 108/445 (24%), Positives = 213/445 (47%), Gaps = 23/445 (5%)

Query: 67  HINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLP 126
           H ++   A++ FD  L+  +L  +  L+  +  + +S E L     +    + PD  T  
Sbjct: 4   HCDSPGDAKAAFD-ALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFI 62

Query: 127 CVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD-D 185
             +       ++++G +IH +V       D  V ++L++MY K G +   +RVF  M+  
Sbjct: 63  TALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERT 122

Query: 186 KDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL-FSWTCLVDGFSKCGKVEIARE---- 240
           ++++SW+ +   +   G V  A++ F  M    +  + + +V   S C    + ++    
Sbjct: 123 RNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRMI 182

Query: 241 ---IFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDME--IRDLITWNSMIAGYELNG 295
              I        L+  NA++  Y + G V+ A ++FD M+  +RD+++WN M++ Y  N 
Sbjct: 183 HSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVHND 242

Query: 296 RFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGT 355
           R  +A++L + M    + P+  T VS LSA +    +  GR +H  IV +    + ++G 
Sbjct: 243 RGKDAIQLYQRM---QLRPDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGN 299

Query: 356 LLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG--- 412
            L+ MY+KCGS   A  VF  + ++ +  WT +I       +  +A  LF +M  +    
Sbjct: 300 ALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNG 359

Query: 413 ----MKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGY 468
               +KP A+ F+ +LNAC+    +  G +  +      G+         +V++  + G 
Sbjct: 360 SSQRVKPDALAFVTILNACADVSALEQG-KMVSEQAASCGLSSDKAVGTAVVNLYGKCGE 418

Query: 469 LEEAKSTIESMPMRPNFVIWMSLLS 493
           +EEA+   +++  RP+  +W ++++
Sbjct: 419 IEEARRIFDAVCSRPDVQLWNAMIA 443



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 165/346 (47%), Gaps = 28/346 (8%)

Query: 166 MYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDRDL 219
           MYA        +  FDA++ ++L SW  L+  +   G+ +  ++  + M      PD   
Sbjct: 1   MYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVT 60

Query: 220 FSWTCLVDGFSKCGKVEIARE--------IFYRMPNRNLVSWNAMINGYMKAGDVDSACE 271
           F     +     CG  E  R+        +  R+     VS NA++N Y K G +  A  
Sbjct: 61  F-----ITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVS-NALLNMYKKCGSLSHAKR 114

Query: 272 LFDDME-IRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLA 330
           +F  ME  R++I+W+ M   + L+G   EAL     ML+  +    + +V+ LSA +  A
Sbjct: 115 VFAKMERTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPA 174

Query: 331 VLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK--KKVGHWTAM 388
           ++  GR +HS I  +GF  + ++   ++ MY +CG++E A  VF A+ +  + V  W  M
Sbjct: 175 LVQDGRMIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIM 234

Query: 389 IVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYG 448
           +     +     A+ L+    RM ++P  +T++ +L+ACS A  V  GR     ++ND  
Sbjct: 235 LSTYVHNDRGKDAIQLYQ---RMQLRPDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDE- 290

Query: 449 IEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG 494
           +E  +     LV +  + G   EA++  + M  R + + W +++S 
Sbjct: 291 LEKNVIVGNALVSMYAKCGSHTEARAVFDKMEQR-SIISWTTIISA 335



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 126/269 (46%), Gaps = 5/269 (1%)

Query: 264 GDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSAL 323
           GD  +A   FD +E R+L +W  ++A + ++G+  E L  LE M    V P+  T ++AL
Sbjct: 9   GDAKAA---FDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITAL 65

Query: 324 SAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK-KKV 382
            +      L  G  +H  +V +   +D  +   L+ MY KCGS+  A  VF  + + + V
Sbjct: 66  GSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNV 125

Query: 383 GHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNM 442
             W+ M     +HG   +AL  F  M  +G+K T    + +L+ACS   LV DG R  + 
Sbjct: 126 ISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDG-RMIHS 184

Query: 443 MINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKD 502
            I   G E  +     ++ +  R G +EEA+   ++M      V+  +++     H ++ 
Sbjct: 185 CIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVHNDRG 244

Query: 503 IGEYAANNLIKVAPDTIGCYVVLSNIYAA 531
                    +++ PD +    +LS   +A
Sbjct: 245 KDAIQLYQRMQLRPDKVTYVSLLSACSSA 273



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 71/143 (49%), Gaps = 5/143 (3%)

Query: 360 MYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAIT 419
           MY+ C S   A   F A+ ++ +  WT ++    + G + + L    +M + G++P A+T
Sbjct: 1   MYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVT 60

Query: 420 FIGVLNACSHAGLVNDGRRYFNMMIND-YGIEPTIEHYGCLVDILCRTGYLEEAKSTIES 478
           FI  L +C     + DG R   M+++    I+P + +   L+++  + G L  AK     
Sbjct: 61  FITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSN--ALLNMYKKCGSLSHAKRVFAK 118

Query: 479 MPMRPNFVIWMSLLSGARN-HGN 500
           M    N + W S+++GA   HGN
Sbjct: 119 MERTRNVISW-SIMAGAHALHGN 140


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Cucumis sativus]
          Length = 1037

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 244/659 (37%), Positives = 375/659 (56%), Gaps = 12/659 (1%)

Query: 39   QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYV 98
            QLH+ ++K  +     +   LL LY      ++  A   F    +  ++VL+N+++  Y 
Sbjct: 383  QLHSHAIKAGMSADIILEGSLLDLY--SKCADVETAHKFF-LTTETENIVLWNVMLVAYG 439

Query: 99   FNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKF 158
                  ++  +F  +    ++P+ FT P +++    LGA+  G+QIH  V K GF  + +
Sbjct: 440  QLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVY 499

Query: 159  VLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRD 218
            V S L+ MYAK+G++ L  R+   + + D+VSW  +I GYV+      A++LF+EM  R 
Sbjct: 500  VCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRG 559

Query: 219  L-FSWTCLVDGFSKCGKV-------EIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSAC 270
            + F         S C  +       +I  + +      +L   NA+I+ Y + G +  A 
Sbjct: 560  IQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAY 619

Query: 271  ELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLA 330
              F+ +  ++ I+WNS+++G   +G F EAL++   ML  +   N  T  SA+SA A LA
Sbjct: 620  LAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLA 679

Query: 331  VLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIV 390
             + +G+ +HS ++K G+  +  +   LI +Y+K GSI  A   F  +S++ V  W AMI 
Sbjct: 680  NIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMIT 739

Query: 391  GLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIE 450
            G   HG   +AL LF +M   G+ P  +TF+GVL+ACSH GLV +G  YF  M   + + 
Sbjct: 740  GYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLV 799

Query: 451  PTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANN 510
            P  EHY C+VD+L R G L+ A   I+ MP+  + +IW +LLS    H N +IGE AA++
Sbjct: 800  PKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHH 859

Query: 511  LIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVV 570
            L+++ P+    YV++SNIYA + QW      R++MK RG +K+PG S IE +  +H F  
Sbjct: 860  LLELEPEDSATYVLISNIYAVSRQWIHRDWSRKLMKDRGVKKEPGRSWIEVKNAVHAFYA 919

Query: 571  GDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFG 630
            GDK HP T++I+  +  +  +    G+V D+   LL   +Q +K+     HSE+LAIAFG
Sbjct: 920  GDKLHPLTNQIYEYIGHLNRRTSEIGYVQDSFS-LLNESEQGQKDPITHVHSEKLAIAFG 978

Query: 631  LINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            L+++ +  PIR++KNLRVCNDCH+  K +S I NR IIVRD  RFHHF  G CSCKDFW
Sbjct: 979  LLSLGNNIPIRVMKNLRVCNDCHNWIKYVSKISNRSIIVRDAHRFHHFDGGVCSCKDFW 1037



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 117/438 (26%), Positives = 207/438 (47%), Gaps = 16/438 (3%)

Query: 72  HYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKG 131
           H A  +FD    + S+  +N +I  +V  + + +   LF  +L   + P+ +T   V+K 
Sbjct: 110 HGAVKVFDEN-SNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLK- 167

Query: 132 AARLG---AIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDL 188
            A +G   A    KQ+H   F  GF     V + L+ +Y+K G I+  ++VF+ +  KD+
Sbjct: 168 -ACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDI 226

Query: 189 VSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFS----WTCLVDGFSKCGKVEIAREIFYR 244
           V+W  +I G  + G  E A+ LF +M   ++F      + ++   +K    E+  ++   
Sbjct: 227 VTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCL 286

Query: 245 MPNRNLVSWNAMING----YMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEA 300
           +      S   + NG    Y ++  + SA  +F  M  RD +++NS+I+G    G    A
Sbjct: 287 VIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRA 346

Query: 301 LELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQM 360
           LEL   M    + P+  T+ S LSA A +  L+KG  +HS+ +K G   D +L   L+ +
Sbjct: 347 LELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDL 406

Query: 361 YSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITF 420
           YSKC  +E+A   F     + +  W  M+V  G     + + ++F +M   GM P   T+
Sbjct: 407 YSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTY 466

Query: 421 IGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP 480
             +L  C+  G +  G +    +I   G +  +     L+D+  + G L  A   +  +P
Sbjct: 467 PSILRTCTSLGALYLGEQIHTHVIKT-GFQLNVYVCSVLIDMYAKYGQLALALRILRRLP 525

Query: 481 MRPNFVIWMSLLSGARNH 498
              + V W ++++G   H
Sbjct: 526 -EDDVVSWTAMIAGYVQH 542



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 102/376 (27%), Positives = 184/376 (48%), Gaps = 15/376 (3%)

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD 187
           +++G    G++ E  ++H  + K GF  +  ++ SLV  Y + G+     +VFD   ++ 
Sbjct: 64  LLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRS 123

Query: 188 LVSWNCLIDGYVKKGEVEVAMKLFDEM------PDRDLFSWT--CLVDG---FSKCGKVE 236
           + SWN +I  +V +        LF  M      P+   F+      V G   F+   +V 
Sbjct: 124 VFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVH 183

Query: 237 IAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGR 296
            +R  +Y   +  LV+ N +I+ Y K G ++SA ++F+ + ++D++TW +MI+G   NG 
Sbjct: 184 -SRTFYYGFDSSPLVA-NLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGL 241

Query: 297 FMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTL 356
             EA+ L   M   ++ P    L S LSA   + +   G  +H  ++K GF  +  +   
Sbjct: 242 EEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNG 301

Query: 357 LIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT 416
           L+ +YS+   + SA  +F  ++ +    + ++I GL   G + +AL+LF KM R  +KP 
Sbjct: 302 LVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPD 361

Query: 417 AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTI 476
            IT   +L+AC+  G ++ G +  +  I   G+   I   G L+D+  +   +E A    
Sbjct: 362 CITVASLLSACASVGALHKGMQLHSHAIKA-GMSADIILEGSLLDLYSKCADVETAHKFF 420

Query: 477 ESMPMRPNFVIWMSLL 492
            +     N V+W  +L
Sbjct: 421 LTTETE-NIVLWNVML 435



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 78/271 (28%), Positives = 132/271 (48%), Gaps = 23/271 (8%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           ++ QQ+HA S          I++ L+SLY       +  A   F++I    + + +N L+
Sbjct: 581 RQGQQIHAQSYAAGFGADLSINNALISLY--ARCGRIQEAYLAFEKIGDKNN-ISWNSLV 637

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
                +    EAL +F  +L      + FT    I  AA L  IK+G+QIH +V K G+ 
Sbjct: 638 SGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYD 697

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDE- 213
            ++ V +SL+S+YAK G I    R F+ M +++++SWN +I GY + G    A++LF+E 
Sbjct: 698 SEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEM 757

Query: 214 -----MPDRDLFSWTCLVDGFSKCGKVEIARE---IFYRMPN-RNLVS----WNAMINGY 260
                MP+   F     V   S C  + + +E    F  M    +LV     +  +++  
Sbjct: 758 KVCGIMPNHVTF-----VGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLL 812

Query: 261 MKAGDVDSACELFDDMEI-RDLITWNSMIAG 290
            +AG +D A E   +M I  D + W ++++ 
Sbjct: 813 GRAGQLDRAMEYIKEMPIPADAMIWRTLLSA 843



 Score = 42.7 bits (99), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 84/183 (45%), Gaps = 17/183 (9%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           K+ QQ+H++ +KT       +S+ L+SLY      ++  A   F+  +   +++ +N +I
Sbjct: 682 KQGQQIHSMVLKTGYDSEREVSNSLISLYAKS--GSISDAWREFND-MSERNVISWNAMI 738

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGK-------QIHGL 147
             Y  +    EAL LF ++    ++P++ T   V+   + +G +KEG        +IH L
Sbjct: 739 TGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDL 798

Query: 148 VFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD-DKDLVSWNCLIDGYVKKGEVEV 206
           V K     + +V   +V +  + G++D        M    D + W  L+   V    +E+
Sbjct: 799 VPKS----EHYV--CVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEI 852

Query: 207 AMK 209
             +
Sbjct: 853 GER 855


>gi|357167019|ref|XP_003580964.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 861

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 236/638 (36%), Positives = 355/638 (55%), Gaps = 36/638 (5%)

Query: 87  LVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHG 146
           LV +N +I   V   R  EA+ +  D++   + PD  T    +   +RL  +  G+++H 
Sbjct: 225 LVTWNTMISLLVQGGRCEEAVQVLYDMVALGVRPDGVTFASALPACSRLELLGVGREVHA 284

Query: 147 LVFKLG-FGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD--KDLVSWNCLIDGYVKKGE 203
            V K      + FV S+LV MYA   ++   RRVFD + +  + L  WN +I GY + G 
Sbjct: 285 FVLKDDDLAANSFVASALVDMYASNEQVSHARRVFDMVPEHGRQLGMWNAMICGYAQHGG 344

Query: 204 V-EVAMKLFDEMPDRD--LFSWTCLVDGFSKCGKVEI--ARE-----IFYRMPNRNLVSW 253
           + E A++LF  M        S T +      C + E+   +E     +  R    N    
Sbjct: 345 MDEEAIELFSRMEAEAGCAPSETTMAGVLPACARSEVFTGKEAVHGYVVKRDMASNRFVQ 404

Query: 254 NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELL--------- 304
           NA+++ Y + G +D A  +F  +++RD+++WN++I G  + G   EA +L+         
Sbjct: 405 NALMDMYARLGRMDEAHTIFAMIDLRDIVSWNTLITGCIVQGLISEAFQLVREMQLPSSA 464

Query: 305 ---ETMLIGD--------VLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVL 353
              ETML GD         +PN+ TL++ L   A LA   +G+ +H Y V++    D  +
Sbjct: 465 ASGETMLEGDDTSVDGQRCMPNNITLMTLLPGCAVLAAPARGKEIHGYAVRHALESDLAV 524

Query: 354 GTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG- 412
           G+ L+ MY+KCG +  A  VF  + ++ V  W  +I+  GMHG+  +AL LF++M   G 
Sbjct: 525 GSALVDMYAKCGCLALARAVFDRLPRRNVITWNVLIMAYGMHGLGDEALALFDRMVANGE 584

Query: 413 MKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEA 472
             P  +TFI  L ACSH+GLV+ G   F  M  DYG EPT   + C+VD+L R G L+EA
Sbjct: 585 ATPNEVTFIAALAACSHSGLVDRGLELFQGMKRDYGFEPTPYLHACVVDVLGRAGRLDEA 644

Query: 473 KSTIESM-PMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAA 531
              I SM P       W ++L   R H N  +G  AA  L ++ PD    YV+L NIY+A
Sbjct: 645 YGIISSMAPGEHQVSAWSTMLGACRLHRNVKLGRIAAERLFELEPDEASHYVLLCNIYSA 704

Query: 532 AGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNK 591
           AG W+  +EVR MM++RG  K+PG S IE  G +H F+ G+ +HP++ ++H+ +  +  +
Sbjct: 705 AGLWENSTEVRGMMRQRGVAKEPGCSWIELDGAIHRFMAGESAHPESAQVHAHMDALWER 764

Query: 592 LKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCND 651
           ++  G+VPDT+ VL  + D+ EK A L  HSE+LAIAFGL+     + IR+ KNLRVCND
Sbjct: 765 MRREGYVPDTSCVLHDV-DEAEKAAMLRYHSEKLAIAFGLLRAPPGATIRVAKNLRVCND 823

Query: 652 CHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           CH   K +S +  REI++RD  RFHHF++G+CSC D+W
Sbjct: 824 CHEAAKFISRMVGREIVLRDVRRFHHFRDGTCSCGDYW 861



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 113/400 (28%), Positives = 195/400 (48%), Gaps = 31/400 (7%)

Query: 121 DNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGF--GFDKFVLSSLVSMYAKFGEIDLGRR 178
           D+F LP  IK AA L   +  + IHG   +          V ++L++ YA+ G++D    
Sbjct: 47  DHFALPPAIKSAAALRDSRSTRAIHGASLRRALLHRPTPAVSNALLTAYARCGDLDAALA 106

Query: 179 VFDAM--DDKDLVSWNCLIDG---YVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCG 233
           +F A   D +D VS+N LI     + + G    A++  D + D ++ S+T LV     C 
Sbjct: 107 LFAATPPDLRDAVSYNSLISALCLFRRWGHALDALR--DMLADHEVSSFT-LVSVLLACS 163

Query: 234 KV-----EIAREIF-------YRMPNRNLVSWNAMINGYMKAGDVDSACELF--DDMEIR 279
            +      + RE         +    R    +NA+++ Y + G VD A  LF      + 
Sbjct: 164 HLADQGHRLGREAHAFALKHGFLDKGRERFPFNALLSMYARLGLVDDAQRLFFSSGAGVG 223

Query: 280 DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMH 339
           DL+TWN+MI+     GR  EA+++L  M+   V P+  T  SAL A + L +L  GR +H
Sbjct: 224 DLVTWNTMISLLVQGGRCEEAVQVLYDMVALGVRPDGVTFASALPACSRLELLGVGREVH 283

Query: 340 SYIVK-NGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK--KKVGHWTAMIVGLGMH- 395
           ++++K +    +  + + L+ MY+    +  A  VF  + +  +++G W AMI G   H 
Sbjct: 284 AFVLKDDDLAANSFVASALVDMYASNEQVSHARRVFDMVPEHGRQLGMWNAMICGYAQHG 343

Query: 396 GMATQALDLFNKM-CRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIE 454
           GM  +A++LF++M    G  P+  T  GVL AC+ + +   G+   +  +    +     
Sbjct: 344 GMDEEAIELFSRMEAEAGCAPSETTMAGVLPACARSEVFT-GKEAVHGYVVKRDMASNRF 402

Query: 455 HYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG 494
               L+D+  R G ++EA +    + +R + V W +L++G
Sbjct: 403 VQNALMDMYARLGRMDEAHTIFAMIDLR-DIVSWNTLITG 441



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 100/227 (44%), Gaps = 22/227 (9%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +++H  +V+  L     + S L+ +Y       L  AR++FDR L   +++ +N+LI  Y
Sbjct: 507 KEIHGYAVRHALESDLAVGSALVDMYAK--CGCLALARAVFDR-LPRRNVITWNVLIMAY 563

Query: 98  VFNQRSHEALTLFCDLLDRFL-----LPDNFTLPCVIKGAARLGAIKEGKQI-HGLVFKL 151
             +    EAL LF    DR +      P+  T    +   +  G +  G ++  G+    
Sbjct: 564 GMHGLGDEALALF----DRMVANGEATPNEVTFIAALAACSHSGLVDRGLELFQGMKRDY 619

Query: 152 GFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAM--DDKDLVSWN-----CLIDGYVKKGEV 204
           GF    ++ + +V +  + G +D    +  +M   +  + +W+     C +   VK G +
Sbjct: 620 GFEPTPYLHACVVDVLGRAGRLDEAYGIISSMAPGEHQVSAWSTMLGACRLHRNVKLGRI 679

Query: 205 EVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLV 251
             A +LF+  PD +   +  L + +S  G  E + E+   M  R + 
Sbjct: 680 -AAERLFELEPD-EASHYVLLCNIYSAAGLWENSTEVRGMMRQRGVA 724


>gi|115471645|ref|NP_001059421.1| Os07g0299800 [Oryza sativa Japonica Group]
 gi|34394298|dbj|BAC84780.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610957|dbj|BAF21335.1| Os07g0299800 [Oryza sativa Japonica Group]
          Length = 673

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 235/566 (41%), Positives = 335/566 (59%), Gaps = 25/566 (4%)

Query: 143 QIHGLVFKLG-FGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKK 201
           Q+H L  + G F  D +  S+L+ MY         RR FD + D + V    +  GYV+ 
Sbjct: 114 QLHLLALRSGLFPSDPYSASALLHMYHHCSRPMDARRAFDEIPDPNPVIVTAMASGYVRN 173

Query: 202 GEVEVAMKLFDEMPDRD---LFSWTCLVDGFSKCGKVE-----------IAREIFYRMPN 247
             V  +++LF  M   D   +      +  FS   +V            IA+  F     
Sbjct: 174 NLVYHSLELFRAMIASDSASVVDEAAALVAFSASARVPDRGVTASLHALIAKIGF----E 229

Query: 248 RNLVSWNAMINGYMKAG--DVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLE 305
           RN    N M++ Y K G  D++ A ++FD ME RD+++WNSMIA Y  NG   EA+ L  
Sbjct: 230 RNAGVVNTMLDSYAKGGSRDLEVARKVFDTME-RDVVSWNSMIALYAQNGMSAEAIGLYS 288

Query: 306 TMLI--GDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSK 363
            ML   G +  N   L + L A A    +  G+ +H+ +V+ G   +  +GT ++ MYSK
Sbjct: 289 KMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYSK 348

Query: 364 CGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGV 423
           CG +E A   FR I +K +  W+AMI G GMHG   +AL++F +M R G++P  ITFI V
Sbjct: 349 CGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISV 408

Query: 424 LNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRP 483
           L ACSHAGL+++GR ++N M  ++GIE  +EHYGC+VD+L R G L+EA S I+ M ++P
Sbjct: 409 LAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKP 468

Query: 484 NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVRE 543
           +  IW +LLS  R H N ++ E +   L ++     G YV+LSNIYA A  W  V  +R 
Sbjct: 469 DAAIWGALLSACRIHKNVELAEMSVKRLFELDASNSGYYVLLSNIYAEARMWKDVERIRL 528

Query: 544 MMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQ 603
           ++K R   K PG SS E +G ++ F VGDKSHPQ  EI+S L ++  +++ AG+VP+T  
Sbjct: 529 LVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHIEIYSYLEKLLERMQEAGYVPNTGS 588

Query: 604 VLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIY 663
           VL  + D++EKE+ L  HSE+LA+AF L+N   RS I I+KNLRVC+DCH+  K ++ I 
Sbjct: 589 VLHDL-DEEEKESALRIHSEKLAVAFALMNSVPRSVIHIIKNLRVCSDCHTAMKFITKIT 647

Query: 664 NREIIVRDNSRFHHFKNGSCSCKDFW 689
            REII+RD  RFHHFK+G CSC+D+W
Sbjct: 648 EREIIIRDLQRFHHFKDGLCSCRDYW 673



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 133/266 (50%), Gaps = 14/266 (5%)

Query: 37  TQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKC 96
           T  LHAL  K     ++G+ + +L  Y      +L  AR +FD + +   +V +N +I  
Sbjct: 216 TASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTMER--DVVSWNSMIAL 273

Query: 97  YVFNQRSHEALTLFCDLLD--RFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
           Y  N  S EA+ L+  +L+    +  +   L  V+   A  GAI+ GK+IH  V ++G  
Sbjct: 274 YAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLE 333

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
            + +V +S+V MY+K G +++  R F  + +K+++SW+ +I GY   G  + A+++F EM
Sbjct: 334 ENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEM 393

Query: 215 PDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNR-----NLVSWNAMINGYMKAGD 265
               L     ++  ++   S  G ++  R  +  M         +  +  M++   +AG 
Sbjct: 394 KRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGC 453

Query: 266 VDSACELFDDMEIR-DLITWNSMIAG 290
           +D A  L  +M+++ D   W ++++ 
Sbjct: 454 LDEAYSLIKEMKVKPDAAIWGALLSA 479


>gi|296085273|emb|CBI29005.3| unnamed protein product [Vitis vinifera]
          Length = 587

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 212/427 (49%), Positives = 288/427 (67%), Gaps = 2/427 (0%)

Query: 264 GDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSAL 323
           G  D A  LF +M  RD+++WNSM+A Y   G+  EAL L + M    V P +AT+VS L
Sbjct: 162 GKRDDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLL 221

Query: 324 SAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVG 383
           SA A L  L+KG  +H+YI  N   V+ ++GT L+ MY+KCG I  A  VF A+  K V 
Sbjct: 222 SACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVL 281

Query: 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMM 443
            W  +I G+ +HG   +A  LF +M   G++P  ITF+ +L+ACSHAG+V++G++  + M
Sbjct: 282 AWNTIIAGMAIHGHVKEAQRLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLDCM 341

Query: 444 INDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDI 503
            + YGIEP +EHYGC++D+L R G LEEA   I +MPM PN     +LL G R HGN ++
Sbjct: 342 SSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTMPMEPNPCALGALLGGCRIHGNFEL 401

Query: 504 GEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRG 563
           GE     LI + P   G Y++LSNIYAAA +WD   +VR +MK  G  K PG S IE +G
Sbjct: 402 GEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKG 461

Query: 564 VLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAA-GHVPDTTQVLLCIEDQKEKEAELENHS 622
           ++H FV GD SHP++++I+ KL+E+  +LK+A GH  DT  VLL +E++ +KE  L  HS
Sbjct: 462 MVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGHSADTGDVLLDMEEE-DKEHALPVHS 520

Query: 623 ERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGS 682
           E+LAIA+GL+++ S+  IRIVKNLRVC DCH VTKL+S +Y REIIVRD +RFHHF++G 
Sbjct: 521 EKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVTKLISKVYGREIIVRDRNRFHHFEDGE 580

Query: 683 CSCKDFW 689
           CSC DFW
Sbjct: 581 CSCLDFW 587



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 147/311 (47%), Gaps = 18/311 (5%)

Query: 54  GISSRLLSLYVDPHINNLHYARSIFDRILQHP--SLVLYNLLIKCYVFNQRSHEALTLFC 111
           G+   +L +++  + N        F    + P   +V +N ++ CY    + +EAL LF 
Sbjct: 144 GVDKGVLKVWMHNNKNTFGKRDDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFD 203

Query: 112 DLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFG 171
            +    + P   T+  ++   A LGA+ +G  +H  +       +  V ++LV MYAK G
Sbjct: 204 QMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCG 263

Query: 172 EIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVD 227
           +I L  +VF+AM+ KD+++WN +I G    G V+ A +LF EM +  +     ++  ++ 
Sbjct: 264 KISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQRLFKEMKEAGVEPNDITFVAMLS 323

Query: 228 GFSKCGKVEIAREIFYRMPNR-----NLVSWNAMINGYMKAGDVDSACELFDDMEIR-DL 281
             S  G V+  +++   M +       +  +  +I+   +AG ++ A EL   M +  + 
Sbjct: 324 ACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTMPMEPNP 383

Query: 282 ITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSY 341
               +++ G  ++G F E  E++   LI ++ P  +     LS +   A     +W  + 
Sbjct: 384 CALGALLGGCRIHGNF-ELGEMVGKRLI-NLQPCHSGRYILLSNIYAAA----KKWDDAR 437

Query: 342 IVKNGFVVDGV 352
            V+N   V+G+
Sbjct: 438 KVRNLMKVNGI 448



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 75/153 (49%), Gaps = 2/153 (1%)

Query: 348 VVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNK 407
           V  GVL   +    +  G  + A  +F  +  + V  W +M+      G   +AL LF++
Sbjct: 145 VDKGVLKVWMHNNKNTFGKRDDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQ 204

Query: 408 MCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTG 467
           M  +G+KPT  T + +L+AC+H G ++ G  + +  IND  IE        LVD+  + G
Sbjct: 205 MRAVGVKPTEATVVSLLSACAHLGALDKG-LHLHTYINDNRIEVNSIVGTALVDMYAKCG 263

Query: 468 YLEEAKSTIESMPMRPNFVIWMSLLSGARNHGN 500
            +  A     +M  + + + W ++++G   HG+
Sbjct: 264 KISLATQVFNAMESK-DVLAWNTIIAGMAIHGH 295


>gi|297739678|emb|CBI29860.3| unnamed protein product [Vitis vinifera]
          Length = 655

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 229/560 (40%), Positives = 340/560 (60%), Gaps = 22/560 (3%)

Query: 142 KQIHGLVF-------KLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCL 194
           +QIH  +         + FG  K +    +S Y   G+ID  R++F  +   ++ SWN +
Sbjct: 74  RQIHARLLTHAMPISSISFGLCKIIGFCALSPY---GDIDYARKLFSQIQRPNIFSWNSM 130

Query: 195 IDGYVK-KGEVEVAMKLFDEM-----PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR 248
           I G  + +   +  + LF +M     P+ + F+   ++   S    +E  +++   +   
Sbjct: 131 IRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSALEEGQQVHANVLKS 190

Query: 249 NLVS----WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELL 304
              S      A++N Y K  D+  A ++FD++  R+L+ W++MI+GY   G   EAL L 
Sbjct: 191 GFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGLVNEALGLF 250

Query: 305 ETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKC 364
             M    V+P++ T+VS +SA A    L+ G+W+H+YI K     D  L T L+ MY+KC
Sbjct: 251 RDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLELSTALVNMYAKC 310

Query: 365 GSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVL 424
           G IE A  VF A+  K    W++MIVGL ++G+A  AL+ F +M    +KP  +TFIGVL
Sbjct: 311 GCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVL 370

Query: 425 NACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPN 484
           +AC+H+GLV++GRRY++ M+ ++GI P++E YGC+VD+LCR   +E+A + +E+MP+ PN
Sbjct: 371 SACAHSGLVSEGRRYWSSML-EFGIVPSMELYGCMVDLLCRASLVEDACTLVETMPISPN 429

Query: 485 FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREM 544
            VIW +LL G +   N D  E  A  L+++ P     Y++LSN+YA+  QW+K+S+VR+ 
Sbjct: 430 PVIWRTLLVGCKKSKNLDKSEVVAQRLLELEPHNAENYILLSNLYASMSQWEKMSQVRKK 489

Query: 545 MKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQV 604
           MK  G +  PG SSIE  G++HEFV+GD SHP+  E+   L ++  ++ A GH P  + V
Sbjct: 490 MKGMGIKAVPGCSSIEVDGLVHEFVMGDWSHPEAMEVREILRDISKRVHAVGHQPGISDV 549

Query: 605 LLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYN 664
           L  + D+ EKE  L  HSERLAIA+GL+  K+   IRIVKNLRVC DCH VTK++S  Y 
Sbjct: 550 LHNVVDE-EKENALCEHSERLAIAYGLLKTKTPMAIRIVKNLRVCGDCHEVTKIISAEYR 608

Query: 665 REIIVRDNSRFHHFKNGSCS 684
           REIIVRD  RFH F NGSCS
Sbjct: 609 REIIVRDRVRFHKFVNGSCS 628



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 104/335 (31%), Positives = 178/335 (53%), Gaps = 16/335 (4%)

Query: 70  NLHYARSIFDRILQHPSLVLYNLLIK-CYVFNQRSHEALTLFCDLLDR-FLLPDNFTLPC 127
           ++ YAR +F +I Q P++  +N +I+ C      S E + LF  ++ R +  P+ FT+  
Sbjct: 108 DIDYARKLFSQI-QRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAF 166

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD 187
           V+K  + + A++EG+Q+H  V K GFG   FV ++LV+ YAK  +I L  +VFD + D++
Sbjct: 167 VLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRN 226

Query: 188 LVSWNCLIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREIFY 243
           LV+W+ +I GY + G V  A+ LF +M       D  +   ++   +  G ++  + +  
Sbjct: 227 LVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHA 286

Query: 244 RMPNRNLVSWN-----AMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFM 298
            + N+ L+  +     A++N Y K G ++ A E+FD M ++D   W+SMI G  +NG   
Sbjct: 287 YI-NKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAE 345

Query: 299 EALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLI 358
           +ALE    M    V PN  T +  LSA A   ++++GR   S +++ G V    L   ++
Sbjct: 346 DALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSMLEFGIVPSMELYGCMV 405

Query: 359 QMYSKCGSIESALTVFRA--ISKKKVGHWTAMIVG 391
            +  +   +E A T+     IS   V  W  ++VG
Sbjct: 406 DLLCRASLVEDACTLVETMPISPNPV-IWRTLLVG 439


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 233/609 (38%), Positives = 342/609 (56%), Gaps = 40/609 (6%)

Query: 120 PDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRV 179
           P   T+  V+  A+ LG    G+Q+H  + +LGFG   F  S LV MYAK G I   RRV
Sbjct: 143 PSRITMSGVVMVASALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRV 202

Query: 180 FDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAR 239
           FD M+ K++V  N +I G ++   V  A  LF+ + +RD  +WT +V G ++ G    A 
Sbjct: 203 FDEMEGKNVVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEAL 262

Query: 240 EIFYRMPNR---------------------------------------NLVSWNAMINGY 260
           ++F RM                                          N+   +A+++ Y
Sbjct: 263 DVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMY 322

Query: 261 MKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLV 320
            K   V  A  +F  M  +++I+W +MI GY  NG   EA+ +   M    + P+D TL 
Sbjct: 323 SKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLG 382

Query: 321 SALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKK 380
           S +S+ A LA L +G   H   + +G      +   L+ +Y KCGSIE A  +F  +S  
Sbjct: 383 SVISSCANLASLEEGAQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFH 442

Query: 381 KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYF 440
               WTA+++G    G A + +DLF KM   G+KP  +TFIGVL+ACS +GLV+ GR YF
Sbjct: 443 DQVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRSGLVDKGRSYF 502

Query: 441 NMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGN 500
           + M  D+ I P  +HY C++D+  R+G+L++A+  I+ MP  P+   W +LLS  R  G+
Sbjct: 503 HSMQQDHDIVPLDDHYTCMIDLYSRSGWLKQAEEFIKQMPRCPDAFGWATLLSACRLRGD 562

Query: 501 KDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIE 560
            +IG++AA NL+K+ P     YV+L +++A+ G+W+ V+++R  M+ R  +K+PG S I+
Sbjct: 563 MEIGKWAAENLLKLDPQNPASYVLLCSMHASKGEWNDVAKLRRGMRDRQVKKEPGCSWIK 622

Query: 561 HRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELEN 620
           ++  +H F   D+SHP +  I+ KL  + +K+   G+ PD + VL  + D  EK   L +
Sbjct: 623 YKNKVHIFSADDQSHPFSRTIYEKLQWLNSKMVEEGYKPDVSSVLHDVAD-AEKVHMLSH 681

Query: 621 HSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKN 680
           HSE+LAIAFGLI V    PIRIVKNLRVC DCH+ TK +S I  R+I+VRD  RFH F N
Sbjct: 682 HSEKLAIAFGLIFVPPEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSN 741

Query: 681 GSCSCKDFW 689
           G CSC DFW
Sbjct: 742 GICSCGDFW 750



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 124/458 (27%), Positives = 204/458 (44%), Gaps = 77/458 (16%)

Query: 144 IHGLVFK-LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKG 202
           +H L+ + L      ++L++L++ YA  G +   RRVFDAM  ++LV+ N L+    + G
Sbjct: 32  VHALILRTLPHPSPTYLLNTLLTAYASSGLLPHARRVFDAMPGRNLVTGNSLLSALARAG 91

Query: 203 EVEVAMKLFDEMPDRDLFSWTCLVDGFSK----------------------------CGK 234
            V    +LF  +P RD  S+  L+ GFS+                             G 
Sbjct: 92  LVRDMERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRITMSGV 151

Query: 235 VEIAREIFYRMPNRNL-------------VSWNAMINGYMKAGDVDSACELFDDM----- 276
           V +A  +  R   R +              + + +++ Y K G +  A  +FD+M     
Sbjct: 152 VMVASALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNV 211

Query: 277 --------------------------EIRDLITWNSMIAGYELNGRFMEALELLETMLIG 310
                                     E RD ITW +M+ G   NG   EAL++   M   
Sbjct: 212 VMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAE 271

Query: 311 DVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESA 370
            V  +  T  S L+A   LA L +G+ +H+YI +  +  +  +G+ L+ MYSKC S+  A
Sbjct: 272 GVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLA 331

Query: 371 LTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHA 430
             VFR +  K +  WTAMIVG G +G   +A+ +F++M R G+KP   T   V+++C++ 
Sbjct: 332 EAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANL 391

Query: 431 GLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMS 490
             + +G ++  + +   G+ P +     LV +  + G +E+A    + M      V W +
Sbjct: 392 ASLEEGAQFHCLALVS-GLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQ-VSWTA 449

Query: 491 LLSGARNHGN-KDIGEYAANNLIK-VAPDTIGCYVVLS 526
           L+ G    G  K+  +     L K V PD +    VLS
Sbjct: 450 LVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLS 487



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/306 (28%), Positives = 150/306 (49%), Gaps = 10/306 (3%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           AR++F+ I +  S+  +  ++     N    EAL +F  +    +  D +T   ++    
Sbjct: 230 ARALFEAIEERDSIT-WTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGSILTACG 288

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
            L A++EGKQIH  + +  +  + FV S+LV MY+K   + L   VF  M  K+++SW  
Sbjct: 289 ALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTA 348

Query: 194 LIDGYVKKGEVEVAMKLFDEMP----DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRN 249
           +I GY + G  E A+++F EM       D F+   ++   +    +E   +         
Sbjct: 349 MIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSG 408

Query: 250 LVSW----NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLE 305
           L  +    NA++  Y K G ++ A  LFD+M   D ++W +++ GY   G+  E ++L E
Sbjct: 409 LRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLFE 468

Query: 306 TMLIGDVLPNDATLVSALSAVAGLAVLNKGR-WMHSYIVKNGFVVDGVLGTLLIQMYSKC 364
            ML   V P+  T +  LSA +   +++KGR + HS    +  V      T +I +YS+ 
Sbjct: 469 KMLSKGVKPDGVTFIGVLSACSRSGLVDKGRSYFHSMQQDHDIVPLDDHYTCMIDLYSRS 528

Query: 365 GSIESA 370
           G ++ A
Sbjct: 529 GWLKQA 534



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 134/271 (49%), Gaps = 13/271 (4%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           +E +Q+HA   +T    +  + S L+ +Y      ++  A ++F R++   +++ +  +I
Sbjct: 294 EEGKQIHAYITRTCYEDNVFVGSALVDMY--SKCRSVRLAEAVFRRMMWK-NIISWTAMI 350

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
             Y  N    EA+ +F ++    + PD+FTL  VI   A L +++EG Q H L    G  
Sbjct: 351 VGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLR 410

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
               V ++LV++Y K G I+   R+FD M   D VSW  L+ GY + G+ +  + LF++M
Sbjct: 411 PYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLFEKM 470

Query: 215 PDR----DLFSWTCLVDGFSKCGKVEIAREIFYRM-PNRNLVS----WNAMINGYMKAGD 265
             +    D  ++  ++   S+ G V+  R  F+ M  + ++V     +  MI+ Y ++G 
Sbjct: 471 LSKGVKPDGVTFIGVLSACSRSGLVDKGRSYFHSMQQDHDIVPLDDHYTCMIDLYSRSGW 530

Query: 266 VDSACELFDDM-EIRDLITWNSMIAGYELNG 295
           +  A E    M    D   W ++++   L G
Sbjct: 531 LKQAEEFIKQMPRCPDAFGWATLLSACRLRG 561


>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
 gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/562 (40%), Positives = 335/562 (59%), Gaps = 18/562 (3%)

Query: 143 QIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK---DLVSWNCLIDGYV 199
           Q+H  + KLGF  +  VL+   S  +    I     +  +++D    D   ++ +I  Y 
Sbjct: 25  QLHTHIIKLGFQNNPLVLTKFTSASSNLDAIPYAMSLVFSVEDARVYDAFLFSTIIRAYA 84

Query: 200 KKGEVE-VAMKLFDEM------PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMP----NR 248
           +  + +  A+  ++ M      P++  F +  ++   +    + + + +   +     + 
Sbjct: 85  ESSQSKHNAIFYYNLMLGYGISPNKYAFPF--VLKACAGLRDLNLGKAVHGSLVKFGFDD 142

Query: 249 NLVSWNAMINGYMK-AGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETM 307
           ++   N M++ Y   +G ++ A +LFD+M   D +TW +MI GY   G+   A+ L   M
Sbjct: 143 DIFVQNTMVHMYCCCSGGMEFARKLFDEMPKLDPVTWTAMIGGYARLGQSAGAVGLFRKM 202

Query: 308 LIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSI 367
            I  V P+D T+VS LSA   L  L  G+W+ SYI K   +    L   L+ M++KCG +
Sbjct: 203 QIAGVCPDDVTMVSVLSACTDLGALELGKWIESYIEKERVLKTVELSNALVDMFAKCGDV 262

Query: 368 ESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNAC 427
           + AL +FR +SK+ +  WT++IVGL MHG   +A+ LF +M   GM P  I FIG+L+AC
Sbjct: 263 DKALGLFRNMSKRTIVSWTSVIVGLAMHGRGLEAVSLFEEMKASGMVPEDIAFIGLLSAC 322

Query: 428 SHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVI 487
           SH+GLV  GR+YF+ M   +GI P IEHYGC+VD+L R G + EA   +E MP+ PN +I
Sbjct: 323 SHSGLVERGRQYFSEMTRQFGIVPKIEHYGCMVDLLSRAGLVTEALEFVERMPIEPNPII 382

Query: 488 WMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547
           W +L+S  R HG   +GE  +  LI+  P     YV+LSNIY     W+K S++R  M K
Sbjct: 383 WRTLISACRVHGELKLGESISKQLIRNEPMHESNYVLLSNIYGKMLDWEKKSKIRVAMGK 442

Query: 548 RGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLC 607
           +G +K PGS+ IE    +HEF+VGD+SH Q +EI   ++EM  ++K AG+ P TT+V L 
Sbjct: 443 KGIQKVPGSTMIELDNEIHEFIVGDRSHNQYNEIIKMVNEMGREMKRAGYAPTTTEVFLD 502

Query: 608 IEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREI 667
           I D+++KE  L  HSE+LAIAF L+N    SPIRI KNLRVC DCHS +K +S IYNREI
Sbjct: 503 I-DEEDKEDALSRHSEKLAIAFALLNTPPGSPIRITKNLRVCGDCHSASKFISKIYNREI 561

Query: 668 IVRDNSRFHHFKNGSCSCKDFW 689
           ++RD SRFHHF++G CSC DFW
Sbjct: 562 VMRDRSRFHHFRDGQCSCGDFW 583


>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 821

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 242/625 (38%), Positives = 355/625 (56%), Gaps = 11/625 (1%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           A+ +FD  +    +V +N +I  YV      E++ +F +++   L P   T+  ++K   
Sbjct: 199 AQKVFDG-MPEKDVVCWNSIIGGYVQKGLFWESIQMFLEMIGGGLRPSPVTMANLLKACG 257

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
           + G  K G   H  V  LG G D FVL+SLV MY+  G+      VFD+M  + L+SWN 
Sbjct: 258 QSGLKKVGMCAHSYVLALGMGNDVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNA 317

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIARE----IFYRM 245
           +I GYV+ G +  +  LF  +       D  +   L+ G S+   +E  R     I  + 
Sbjct: 318 MISGYVQNGMIPESYALFRRLVQSGSGFDSGTLVSLIRGCSQTSDLENGRILHSCIIRKE 377

Query: 246 PNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLE 305
              +LV   A+++ Y K G +  A  +F  M  +++ITW +M+ G   NG   +AL+L  
Sbjct: 378 LESHLVLSTAIVDMYSKCGAIKQATIVFGRMGKKNVITWTAMLVGLSQNGYAEDALKLFC 437

Query: 306 TMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCG 365
            M    V  N  TLVS +   A L  L KGR +H++ +++G+  D V+ + LI MY+KCG
Sbjct: 438 QMQEEKVAANSVTLVSLVHCCAHLGSLTKGRTVHAHFIRHGYAFDAVITSALIDMYAKCG 497

Query: 366 SIESALTVFR-AISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVL 424
            I SA  +F      K V    +MI+G GMHG    AL ++++M    +KP   TF+ +L
Sbjct: 498 KIHSAEKLFNNEFHLKDVILCNSMIMGYGMHGHGRYALGVYSRMIEERLKPNQTTFVSLL 557

Query: 425 NACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPN 484
            ACSH+GLV +G+  F+ M  D+ + P  +HY CLVD+  R G LEEA   ++ MP +P+
Sbjct: 558 TACSHSGLVEEGKALFHSMERDHDVRPQHKHYACLVDLHSRAGRLEEADELVKQMPFQPS 617

Query: 485 FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREM 544
             +  +LLSG R H N ++G   A+ LI +     G YV+LSNIYA A +W+ V+ +R +
Sbjct: 618 TDVLEALLSGCRTHKNTNMGIQIADRLISLDYLNSGIYVMLSNIYAEARKWESVNYIRGL 677

Query: 545 MKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQV 604
           M+ +G +K PG S IE    ++ F   D SHP   +I+  L  +R +++A G++PDT+ V
Sbjct: 678 MRMQGMKKIPGYSLIEVGNKVYTFFASDDSHPSWADIYQLLENLRLEVEAEGYIPDTSCV 737

Query: 605 LLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYN 664
           L  + ++  K   L  HSERLAIAFGL++    S I+I KNLRVC DCH+VTK +S I  
Sbjct: 738 LRDV-NEPMKVKLLWGHSERLAIAFGLLSTPCGSLIKITKNLRVCVDCHNVTKYISKIVQ 796

Query: 665 REIIVRDNSRFHHFKNGSCSCKDFW 689
           REIIVRD +RFHHF NG CSC DFW
Sbjct: 797 REIIVRDANRFHHFVNGKCSCNDFW 821



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 145/528 (27%), Positives = 242/528 (45%), Gaps = 79/528 (14%)

Query: 20  PSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFD 79
           PS     + +FS+T    + +HA  +K  +   S ++++L+ +Y D  +  L +AR++FD
Sbjct: 46  PSVFSSLLHQFSNTLIHVKSIHAQIIKNWVSTESFLAAKLIRVYSD--LGFLGHARNVFD 103

Query: 80  RILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIK 139
           +    P   + N +I  ++ NQ+  E   LF  +    +  +++T    +K    L   +
Sbjct: 104 QC-SLPETAVCNAMIAGFLRNQQHMEVPRLFRMMGSCDIEINSYTCMFALKACTDLLDDE 162

Query: 140 EGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYV 199
            G +I     + GF    +V SS+V+   K G +   ++VFD M +KD+V WN +I GYV
Sbjct: 163 VGMEIIRAAVRRGFHLHLYVGSSMVNFLVKRGYLADAQKVFDGMPEKDVVCWNSIIGGYV 222

Query: 200 KKGEVEVAMKLFDEM------PD---------------------------------RDLF 220
           +KG    ++++F EM      P                                   D+F
Sbjct: 223 QKGLFWESIQMFLEMIGGGLRPSPVTMANLLKACGQSGLKKVGMCAHSYVLALGMGNDVF 282

Query: 221 SWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRD 280
             T LVD +S  G    A  +F  M +R+L+SWNAMI+GY++ G +  +  LF     R 
Sbjct: 283 VLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNGMIPESYALF-----RR 337

Query: 281 LITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHS 340
           L+   S   G++                         TLVS +   +  + L  GR +HS
Sbjct: 338 LVQSGS---GFD-----------------------SGTLVSLIRGCSQTSDLENGRILHS 371

Query: 341 YIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQ 400
            I++       VL T ++ MYSKCG+I+ A  VF  + KK V  WTAM+VGL  +G A  
Sbjct: 372 CIIRKELESHLVLSTAIVDMYSKCGAIKQATIVFGRMGKKNVITWTAMLVGLSQNGYAED 431

Query: 401 ALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMI-NDYGIEPTIEHYGCL 459
           AL LF +M    +   ++T + +++ C+H G +  GR      I + Y  +  I     L
Sbjct: 432 ALKLFCQMQEEKVAANSVTLVSLVHCCAHLGSLTKGRTVHAHFIRHGYAFDAVIT--SAL 489

Query: 460 VDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYA 507
           +D+  + G +  A+    +     + ++  S++ G   HG+   G YA
Sbjct: 490 IDMYAKCGKIHSAEKLFNNEFHLKDVILCNSMIMGYGMHGH---GRYA 534


>gi|345505232|gb|AEN99840.1| chlororespiratory reduction 4, partial [Olimarabidopsis pumila]
          Length = 579

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 237/571 (41%), Positives = 330/571 (57%), Gaps = 43/571 (7%)

Query: 41  HALSVKTNLIYHSGISSRL-LSLYVDPHINNLHYARSIFDRI-----LQHPSLVLYNLLI 94
           HA  +KT +I +S +++R+ L+    P      +AR +F        ++ P   L+N +I
Sbjct: 2   HARLIKTGIIKNSNLTTRIVLAFAASPRPYLAEFARFVFHEYHYGGEVEDP--YLWNAMI 59

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
           K +        AL LFC +L+  +  D F+L  V+K  +RLG +K G QIHG + K G  
Sbjct: 60  KSHSHGTDPRRALLLFCLMLEIGVPVDKFSLSLVMKACSRLGFVKGGLQIHGFLKKTGLW 119

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVE--------- 205
            D F+ + L+ +Y K G +   R++FD M  +D VS+N +IDGYVK G +E         
Sbjct: 120 SDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGSIESASELFDLM 179

Query: 206 -------------------------VAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIARE 240
                                    +A KLF EMP++DL SW  ++DG+ K G++E A++
Sbjct: 180 PREMKNLISWNSLISGYAQTSEGVDIASKLFAEMPEKDLISWNSMIDGYVKHGRIEDAKD 239

Query: 241 IFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEA 300
           +F  +P R++V+W  MI+GY K G V  A  LFD M  RD++ +NSM+AGY  N   MEA
Sbjct: 240 LFDMVPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMPHRDVVAYNSMMAGYVQNRFHMEA 299

Query: 301 LELLETMLIGDVL-PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQ 359
           LE+   M     L P++ TLV  LSA+A L  L+K   MH YIV+  F++ G LG  LI 
Sbjct: 300 LEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFLLGGKLGVALID 359

Query: 360 MYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAIT 419
           MYSKCGSI+ A+ VF  I  K + HW AMI GL +HG+   A D+  ++ R  +KP  IT
Sbjct: 360 MYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDIT 419

Query: 420 FIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM 479
           F+GVLNACSH+GLV +G   F +M   + IEP ++HYGC+VDIL R+G +E AK+ IE M
Sbjct: 420 FVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEM 479

Query: 480 PMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVS 539
           P+ PN VIW + L+   +H   + GE  A +LI  A      YV+LSN+YA+ G W  V 
Sbjct: 480 PIEPNDVIWRTFLTACSHHKEFETGELVAKHLILQADYNPSSYVLLSNMYASFGMWKDVR 539

Query: 540 EVREMMKKRGFRKDPGSSSIEHRGVLHEFVV 570
            VR MMK+R   K PG S IE  G +HEF V
Sbjct: 540 RVRTMMKERKIEKIPGCSWIELDGXVHEFFV 570


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  427 bits (1098), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 241/702 (34%), Positives = 368/702 (52%), Gaps = 82/702 (11%)

Query: 69  NNLHYARSIFDRILQ-HPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDR-FLLPDNFTLP 126
           + L  A S FD +       VL+N +I  Y     +  A+ +F  LL    L PD+++  
Sbjct: 102 DRLPAAVSFFDAVPPARRDTVLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFT 161

Query: 127 CVIKGAARLG--AIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKF-------------- 170
            ++     L   +++   Q+H  V K G G    V ++LV++Y K               
Sbjct: 162 ALLSAGGHLPNISVRHCAQLHCSVLKSGAGGALSVCNALVALYMKCESPEATRDARKVLD 221

Query: 171 --------------------GEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
                               G++   R VF+ +D K  V WN +I GYV  G    A +L
Sbjct: 222 EMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFEL 281

Query: 211 FDEM-------------------------------------------PDRDLFSWTCLVD 227
           F  M                                           P+  L     LV 
Sbjct: 282 FRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVT 341

Query: 228 GFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSM 287
            +SKCG + +AR IF  M  +++VSWN +++GY+++  +D A E+F++M  ++ ++W  M
Sbjct: 342 FYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVM 401

Query: 288 IAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGF 347
           ++GY   G   +AL+L   M   +V P D T   A++A   L  L  G+ +H +IV+ GF
Sbjct: 402 VSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGF 461

Query: 348 VVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNK 407
                 G  LI MY++CG+++ A  +F  +       W AMI  LG HG   +AL+LF++
Sbjct: 462 EGSNSAGNALITMYARCGAVKEAHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDR 521

Query: 408 MCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTG 467
           M   G+ P  I+F+ VL AC+H+GLV++G RYF  M  D+GI P  +HY  L+D+L R G
Sbjct: 522 MVAEGIYPDRISFLTVLTACNHSGLVDEGFRYFESMKRDFGIIPGEDHYTRLIDLLGRAG 581

Query: 468 YLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSN 527
            + EA+  I++MP  P   IW ++LSG R  G+ ++G +AA+ L K+ P   G Y++LSN
Sbjct: 582 RIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSN 641

Query: 528 IYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSE 587
            Y+AAG W   + VR++M+ RG +K+PG S IE    +H F+VGD  HP+  E++  L  
Sbjct: 642 TYSAAGCWVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHVFLVGDTKHPEAHEVYKFLEM 701

Query: 588 MRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLR 647
           +  K++  G+VPDT  VL  +E   +KE  L  HSERLA+ FGL+N+   + + ++KNLR
Sbjct: 702 VGAKMRKLGYVPDTKVVLHDMEPH-QKEHILFAHSERLAVGFGLLNLPPGATVTVLKNLR 760

Query: 648 VCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           +C+DCH+    +S    REI+VRD  RFHHFK+G CSC ++W
Sbjct: 761 ICDDCHAAIMFMSKAVGREIVVRDVRRFHHFKDGECSCGNYW 802


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  427 bits (1098), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 229/625 (36%), Positives = 356/625 (56%), Gaps = 12/625 (1%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDR-FLLPDNFTLPCVIKGA 132
           AR +FDR+      V +N L+  Y  N  +  A+ +   + +     PD  TL  V+   
Sbjct: 279 ARRVFDRMPAR-DRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPAC 337

Query: 133 ARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWN 192
           A   A+   +++H    + GF     V ++++ +Y K G +D  R+VFD M D++ VSWN
Sbjct: 338 ADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWN 397

Query: 193 CLIDGYVKKGEVEVAMKLFDEMPDRDL-FSWTCLVDGFSKCGKVEI------AREIFYRM 245
            +I GY + G+   A+ LF  M    +  +   ++     CG++          E+  R+
Sbjct: 398 AMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVRI 457

Query: 246 P-NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELL 304
               N+   NA+I  Y K    D A ++FD++  +  ++WN+MI G   NG   +A+ L 
Sbjct: 458 GLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLF 517

Query: 305 ETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKC 364
             M + +V P+  TLVS + A+A ++   + RW+H Y ++     D  + T LI MY+KC
Sbjct: 518 SRMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKC 577

Query: 365 GSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVL 424
           G +  A ++F +   + V  W AMI G G HG    A++LF +M   G  P   TF+ VL
Sbjct: 578 GRVSIARSLFNSARDRHVITWNAMIHGYGSHGSGKVAVELFEEMKSSGKVPNETTFLSVL 637

Query: 425 NACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPN 484
           +ACSHAGLV++G+ YF+ M  DYG+EP +EHYG +VD+L R G L EA S I+ MPM P 
Sbjct: 638 SACSHAGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDLLGRAGKLHEAWSFIQKMPMEPG 697

Query: 485 FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREM 544
             ++ ++L   + H N ++ E +A  + ++ P+    +V+L+NIYA A  W  V+ VR  
Sbjct: 698 ISVYGAMLGACKLHKNVELAEESAQRIFELEPEEGVYHVLLANIYANASLWKDVARVRTA 757

Query: 545 MKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQV 604
           M+K+G +K PG S ++ +  +H F  G  +H Q  +I+++L+++  ++KA G+VPDT  +
Sbjct: 758 MEKKGLQKTPGWSIVQLKNEIHTFYSGSTNHQQAKDIYARLAKLIEEIKAVGYVPDTDSI 817

Query: 605 LLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYN 664
               +D K +   L  HSE+LAIA+GLI     + I+I KNLRVC DCH+ TKL+S +  
Sbjct: 818 HDVEDDVKAQ--LLNTHSEKLAIAYGLIRTAPGTTIQIKKNLRVCKDCHNATKLISLVTG 875

Query: 665 REIIVRDNSRFHHFKNGSCSCKDFW 689
           REII+RD  RFHHFK+G CSC D+W
Sbjct: 876 REIIMRDIQRFHHFKDGKCSCGDYW 900



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 110/425 (25%), Positives = 181/425 (42%), Gaps = 81/425 (19%)

Query: 124 TLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAM 183
           T   ++K  A    +  G+ +H  +   G   +    ++L +MYAK       RRVFD M
Sbjct: 227 TFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGDARRVFDRM 286

Query: 184 DDKDLVSWNCLIDGYVKKGEVEVAMKLF-------DEMPD-------------------- 216
             +D V+WN L+ GY + G  E A+ +         E PD                    
Sbjct: 287 PARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQALGAC 346

Query: 217 RDLFSW-------------TCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKA 263
           R++ ++             T ++D + KCG V+ AR++F  M +RN VSWNAMI GY + 
Sbjct: 347 REVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAEN 406

Query: 264 GDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSAL 323
           GD                                 EAL L + M+   V   D ++++AL
Sbjct: 407 GDA-------------------------------TEALALFKRMVGEGVDVTDVSVLAAL 435

Query: 324 SAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVG 383
            A   L  L++GR +H  +V+ G   +  +   LI MY KC   + A  VF  +  K   
Sbjct: 436 HACGELGFLDEGRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRV 495

Query: 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMM 443
            W AMI+G   +G +  A+ LF++M    +KP + T + ++ A +        R      
Sbjct: 496 SWNAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQAR-----W 550

Query: 444 INDYGIEPTIEH----YGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
           I+ Y I   ++        L+D+  + G +  A+S   S   R + + W +++ G  +HG
Sbjct: 551 IHGYSIRLHLDQDVYVLTALIDMYAKCGRVSIARSLFNSARDR-HVITWNAMIHGYGSHG 609

Query: 500 NKDIG 504
           +  + 
Sbjct: 610 SGKVA 614



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 144/303 (47%), Gaps = 34/303 (11%)

Query: 218 DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDME 277
           +  + T L + ++KC +   AR +F RMP R+ V+WNA++ GY + G  ++A  +   M+
Sbjct: 259 EALAATALANMYAKCRRPGDARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQ 318

Query: 278 IRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRW 337
             D                             G+  P+  TLVS L A A    L   R 
Sbjct: 319 EED-----------------------------GE-RPDAVTLVSVLPACADAQALGACRE 348

Query: 338 MHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGM 397
           +H++ V+ GF     + T ++ +Y KCG+++SA  VF  +  +    W AMI G   +G 
Sbjct: 349 VHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENGD 408

Query: 398 ATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYG 457
           AT+AL LF +M   G+  T ++ +  L+AC   G +++GRR   +++   G+E  +    
Sbjct: 409 ATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVR-IGLESNVNVMN 467

Query: 458 CLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKD--IGEYAANNLIKVA 515
            L+ + C+    + A    + +  +   V W +++ G   +G+ +  +  ++   L  V 
Sbjct: 468 ALITMYCKCKRTDLAAQVFDELGYKTR-VSWNAMILGCTQNGSSEDAVRLFSRMQLENVK 526

Query: 516 PDT 518
           PD+
Sbjct: 527 PDS 529


>gi|357119334|ref|XP_003561397.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Brachypodium distachyon]
          Length = 635

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 210/473 (44%), Positives = 305/473 (64%), Gaps = 2/473 (0%)

Query: 218 DLFSWTCLVDGFSKCGKVEIAREIFYRMPN-RNLVSWNAMINGYMKAGDVDSACELFDDM 276
           DL+    L   +  CG V   R +F  +P  R++V+WNA++ GY++AG V +A E+F++M
Sbjct: 164 DLYVRNALTHFYGVCGDVGAMRTVFDELPRVRDVVTWNAVLAGYVRAGMVRAAREVFEEM 223

Query: 277 EIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGR 336
            +RD ++W++++ GY   G    AL +   M+   V  N+A +V+ALSA A + +L  GR
Sbjct: 224 PVRDEVSWSTLVGGYVKEGELDVALGVFRDMVEKGVRVNEAAVVTALSAAAQMGLLEHGR 283

Query: 337 WMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHG 396
           ++H  + + G  V   +G  L+ M+SKCG +  A  VF  + ++ V  W AMI GL  HG
Sbjct: 284 FVHEVVQRTGMPVSVNVGAALVDMFSKCGCVAVAREVFDGMPRRDVFAWNAMICGLASHG 343

Query: 397 MATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHY 456
           +   A++LF +    G+ PT ITF+GVLNACS  GLV +GRRYF +M++ Y IEP +EHY
Sbjct: 344 LGQDAVELFWRFLDEGLWPTDITFVGVLNACSRCGLVAEGRRYFKLMVDKYRIEPEMEHY 403

Query: 457 GCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAP 516
           GC+VD+L R G + EA   IE M + P+ V+W ++LS  + H   D+G    N LI++ P
Sbjct: 404 GCMVDLLGRAGLVSEAIELIEGMHIAPDPVLWGTVLSACKTHNLVDLGITVGNKLIELEP 463

Query: 517 DTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHP 576
              G YV+L++IYA A +WD+V EVR++M  RG  K  G S +E +G LH+F+VGD  H 
Sbjct: 464 AHDGHYVLLASIYAKAKKWDEVREVRKLMSSRGTGKSAGWSLMEAQGNLHKFLVGDMDHK 523

Query: 577 QTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKS 636
            + +I++ L  +  +L  AG+VPD + VL  I D+ EK   ++ HSERLAIA+G I  + 
Sbjct: 524 DSVQIYNMLDMINRRLADAGYVPDVSSVLHDIGDE-EKVHAIKVHSERLAIAYGFIVTEV 582

Query: 637 RSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            SPIRIVKNL+VC DCH  +K+++ ++NREIIVRD SRFHH K G CSC D+W
Sbjct: 583 GSPIRIVKNLQVCGDCHEFSKMVTKVFNREIIVRDGSRFHHMKEGKCSCLDYW 635



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 103/383 (26%), Positives = 166/383 (43%), Gaps = 77/383 (20%)

Query: 141 GKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD-KDLVSWNCLIDGYV 199
           G  +H L  K G   D +V ++L   Y   G++   R VFD +   +D+V+WN ++ GYV
Sbjct: 149 GSHVHALAVKAGAAGDLYVRNALTHFYGVCGDVGAMRTVFDELPRVRDVVTWNAVLAGYV 208

Query: 200 KKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNL--------- 250
           + G V  A ++F+EMP RD  SW+ LV G+ K G++++A  +F  M  + +         
Sbjct: 209 RAGMVRAAREVFEEMPVRDEVSWSTLVGGYVKEGELDVALGVFRDMVEKGVRVNEAAVVT 268

Query: 251 ---------------------------VSWN---AMINGYMKAGDVDSACELFDDMEIRD 280
                                      VS N   A+++ + K G V  A E+FD M  RD
Sbjct: 269 ALSAAAQMGLLEHGRFVHEVVQRTGMPVSVNVGAALVDMFSKCGCVAVAREVFDGMPRRD 328

Query: 281 LITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHS 340
           +  WN+MI G   +G   +A+EL    L   + P D T V  L+A +   ++ +GR    
Sbjct: 329 VFAWNAMICGLASHGLGQDAVELFWRFLDEGLWPTDITFVGVLNACSRCGLVAEGR---R 385

Query: 341 YIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQ 400
           Y              L++  Y     +E               H+  M+  LG  G+ ++
Sbjct: 386 YF------------KLMVDKYRIEPEME---------------HYGCMVDLLGRAGLVSE 418

Query: 401 ALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIE-HYGCL 459
           A++L      M + P  + +  VL+AC    LV+ G    N +I    +EP  + HY  L
Sbjct: 419 AIELIEG---MHIAPDPVLWGTVLSACKTHNLVDLGITVGNKLIE---LEPAHDGHYVLL 472

Query: 460 VDILCRTGYLEEAKSTIESMPMR 482
             I  +    +E +   + M  R
Sbjct: 473 ASIYAKAKKWDEVREVRKLMSSR 495



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 114/227 (50%), Gaps = 11/227 (4%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           AR +F+ +      V ++ L+  YV       AL +F D++++ +  +   +   +  AA
Sbjct: 216 AREVFEEMPVRDE-VSWSTLVGGYVKEGELDVALGVFRDMVEKGVRVNEAAVVTALSAAA 274

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
           ++G ++ G+ +H +V + G      V ++LV M++K G + + R VFD M  +D+ +WN 
Sbjct: 275 QMGLLEHGRFVHEVVQRTGMPVSVNVGAALVDMFSKCGCVAVAREVFDGMPRRDVFAWNA 334

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDRDLF----SWTCLVDGFSKCGKVEIAREIFYRMPNRN 249
           +I G    G  + A++LF    D  L+    ++  +++  S+CG V   R  F  M ++ 
Sbjct: 335 MICGLASHGLGQDAVELFWRFLDEGLWPTDITFVGVLNACSRCGLVAEGRRYFKLMVDKY 394

Query: 250 LVS-----WNAMINGYMKAGDVDSACELFDDMEIR-DLITWNSMIAG 290
            +      +  M++   +AG V  A EL + M I  D + W ++++ 
Sbjct: 395 RIEPEMEHYGCMVDLLGRAGLVSEAIELIEGMHIAPDPVLWGTVLSA 441


>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
 gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 236/608 (38%), Positives = 340/608 (55%), Gaps = 72/608 (11%)

Query: 120 PDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRV 179
           PDNFT P +IK  + L   + G +IH  V K G+    F+ +SL++MY K  + +L R+V
Sbjct: 8   PDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDKYELSRQV 67

Query: 180 FDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDRD--LFSWTCL------ 225
           FD M DK+ VSW+ +I   ++    +    LF +M      P R   L +  C+      
Sbjct: 68  FDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRPSRGAILNAMACVRSHEEA 127

Query: 226 ----------------------VDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKA 263
                                    F++CG+VE+AR++F  + +++LV+W   I  Y+KA
Sbjct: 128 DDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVTWATTIEAYVKA 187

Query: 264 GDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSAL 323
                      DM                     +EAL LL+ M++  + P+  TL+  +
Sbjct: 188 -----------DMP--------------------LEALGLLKQMMLQGIFPDAITLLGVI 216

Query: 324 SAVAGLAVLNKGRWMHSYIVKNGFVVDGVLG--TLLIQMYSKCGSIESALTVFRAISKKK 381
            A + LA       +H  I+  GF  + +L   T LI +Y KCGS+  A  VF  + ++ 
Sbjct: 217 RACSTLASFQLAHIVHG-IITTGFFYNQLLAVETALIDLYVKCGSLTYARKVFDGMQERN 275

Query: 382 VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFN 441
           +  W+AMI G GMHG   +AL+LF++M +  +KP  ITF+ +L+ACSH+GLV +G   FN
Sbjct: 276 IITWSAMISGYGMHGWGREALNLFDQM-KASVKPDHITFVSILSACSHSGLVAEGWECFN 334

Query: 442 MMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNK 501
            M  D+G+ P  EHY C+VDIL R G L+EA   IE MP+RPN  +W +LL   R H N 
Sbjct: 335 SMARDFGVTPRPEHYACMVDILGRAGKLDEACDFIERMPVRPNAAVWGALLGACRIHLNV 394

Query: 502 DIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEH 561
           D+ E  A  L  + P   G YV+L NIY   G+  +   +R +MK RG +K  G S IE 
Sbjct: 395 DLAEMVARALFDLDPHNAGRYVILYNIYTLTGKRKEADSIRTLMKNRGVKKIAGYSVIEI 454

Query: 562 RGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENH 621
           +  L+ FV GD+SHPQTD I+S+L  + ++++  G+ PD   VL  + D++ KE+ L  H
Sbjct: 455 KNKLYAFVAGDRSHPQTDLIYSELERLMDRIRQEGYTPDINFVLHDV-DEETKESMLYLH 513

Query: 622 SERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNG 681
           SE+LAI FGL+N+   S IRI KNLRVC DCH+ TK +S +  REI+VRD  RFHHFKNG
Sbjct: 514 SEKLAIVFGLLNLGPGSVIRIRKNLRVCGDCHTATKFISKVTGREIVVRDAHRFHHFKNG 573

Query: 682 SCSCKDFW 689
           +CSC+D+W
Sbjct: 574 ACSCRDYW 581



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 134/283 (47%), Gaps = 16/283 (5%)

Query: 20  PSR-LHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIF 78
           PSR    N +    +H+E   ++ + V+  L +   + S    ++       +  AR +F
Sbjct: 109 PSRGAILNAMACVRSHEEADDVYRVVVENGLDFDQSVQSAAAGMFA--RCGRVEVARKLF 166

Query: 79  DRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAI 138
           D I+    LV +   I+ YV      EAL L   ++ + + PD  TL  VI+  + L + 
Sbjct: 167 DGIMS-KDLVTWATTIEAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASF 225

Query: 139 KEGKQIHGLVFKLGFGFDKF--VLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLID 196
           +    +HG++   GF +++   V ++L+ +Y K G +   R+VFD M ++++++W+ +I 
Sbjct: 226 QLAHIVHGII-TTGFFYNQLLAVETALIDLYVKCGSLTYARKVFDGMQERNIITWSAMIS 284

Query: 197 GYVKKGEVEVAMKLFDEMP---DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS- 252
           GY   G    A+ LFD+M      D  ++  ++   S  G V    E F  M     V+ 
Sbjct: 285 GYGMHGWGREALNLFDQMKASVKPDHITFVSILSACSHSGLVAEGWECFNSMARDFGVTP 344

Query: 253 ----WNAMINGYMKAGDVDSACELFDDMEIR-DLITWNSMIAG 290
               +  M++   +AG +D AC+  + M +R +   W +++  
Sbjct: 345 RPEHYACMVDILGRAGKLDEACDFIERMPVRPNAAVWGALLGA 387


>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
          Length = 865

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 228/644 (35%), Positives = 359/644 (55%), Gaps = 54/644 (8%)

Query: 87  LVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHG 146
           +V +N++I     + R  EAL L  ++  + +  D+ T    +   ARL ++  GKQ+H 
Sbjct: 235 VVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHA 294

Query: 147 LVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEV 206
            V +     D +V S+L+ +YAK G     +RVF+++ D++ VSW  LI G ++      
Sbjct: 295 KVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSK 354

Query: 207 AMKLFDEMPDR----DLFSWTCLVDG---------------------------------- 228
           +++LF++M       D F+   L+ G                                  
Sbjct: 355 SVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLIS 414

Query: 229 -FSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSM 287
            ++KCG ++ A  +F  M  R++VSW +MI  Y + G++  A E FD M+ R+ ITWN+M
Sbjct: 415 LYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMDTRNAITWNAM 474

Query: 288 IAGYELNGRFMEALELLETMLI-GDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNG 346
           +  Y  +G   + L++   ML   DV P+  T V+     A +     G  +  + VK G
Sbjct: 475 LGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAG 534

Query: 347 FVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFN 406
            +++  +    I MYSKCG I  A  +F  ++ K V  W AMI G   HGM  QA   F+
Sbjct: 535 LILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFD 594

Query: 407 KMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRT 466
            M   G KP  I+++ VL+ CSH+GLV +G+ YF+MM   +GI P +EH+ C+VD+L R 
Sbjct: 595 DMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRA 654

Query: 467 GYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKV-APDTIGCYVVL 525
           G+L EAK  I+ MPM+P   +W +LLS  + HGN ++ E AA ++ ++ +PD+ G Y++L
Sbjct: 655 GHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDSPDS-GSYMLL 713

Query: 526 SNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKL 585
           + IY+ AG+ D  ++VR++M+ +G +K+PG S +E    +H F   D SHPQ   I +KL
Sbjct: 714 AKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVSHPQVIAIRNKL 773

Query: 586 SEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKN 645
            E+  K+   G+V            + E      +HSE+LA+AFG++++ +  PI I+KN
Sbjct: 774 DELMEKIAHLGYV------------RTESPRSEIHHSEKLAVAFGIMSLPAWMPIHIMKN 821

Query: 646 LRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           LR+C DCH+V KL+S + +RE ++RD  RFHHFK+GSCSC D+W
Sbjct: 822 LRICGDCHTVIKLISSVTDREFVIRDGVRFHHFKSGSCSCGDYW 865



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 101/374 (27%), Positives = 172/374 (45%), Gaps = 42/374 (11%)

Query: 167 YAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLF-------DEMPDRDL 219
           YAK G +     +FD M  +D+ SWN L+ GY +       ++ F       D +P+   
Sbjct: 81  YAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFT 140

Query: 220 FS---------------------------W------TCLVDGFSKCGKVEIAREIFYRMP 246
           F                            W      T LVD F +CG V+ A  +F ++ 
Sbjct: 141 FCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIE 200

Query: 247 NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLET 306
              +   N+M+ GY K   +D A E F+DM  RD+++WN MIA    +GR  EAL L+  
Sbjct: 201 RPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVE 260

Query: 307 MLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGS 366
           M    V  +  T  S+L+A A L  L  G+ +H+ ++++   +D  + + LI++Y+KCGS
Sbjct: 261 MHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGS 320

Query: 367 IESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNA 426
            + A  VF ++  +    WT +I G   +   +++++LFN+M    M         +++ 
Sbjct: 321 FKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISG 380

Query: 427 CSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFV 486
           C +   +  GR+  ++ +   G    I     L+ +  + G L+ A+    SM  R + V
Sbjct: 381 CFNRMDLCLGRQLHSLCLKS-GHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSER-DIV 438

Query: 487 IWMSLLSGARNHGN 500
            W S+++     GN
Sbjct: 439 SWTSMITAYSQIGN 452



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 127/537 (23%), Positives = 227/537 (42%), Gaps = 89/537 (16%)

Query: 70  NLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDL-LDRFLLPDNFTLPCV 128
           +L  A  +FDR+ +   +  +N L+  Y   +R  + L  F  +      LP+ FT  CV
Sbjct: 86  SLSDAEELFDRMPRR-DVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCV 144

Query: 129 IKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDL 188
           +K    LG  +   Q+ GL +K  F  D  V ++LV M+ + G +D   R+F  ++   +
Sbjct: 145 MKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTI 204

Query: 189 VSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR 248
              N ++ GY K   ++ A++ F++M +RD+ SW  ++   S+ G+V  A  +   M  +
Sbjct: 205 FCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRK 264

Query: 249 NL-------------------VSW--------------------NAMINGYMKAGDVDSA 269
            +                   + W                    +A+I  Y K G    A
Sbjct: 265 GVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEA 324

Query: 270 CELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGL 329
             +F+ ++ R+ ++W  +I G      F +++EL   M    +  +   L + +S     
Sbjct: 325 KRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNR 384

Query: 330 AVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMI 389
             L  GR +HS  +K+G     V+   LI +Y+KCG +++A  VF ++S++ +  WT+MI
Sbjct: 385 MDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMI 444

Query: 390 VGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGI 449
                 G   +A + F+ M        AIT+  +L A    G   DG + ++ M++   +
Sbjct: 445 TAYSQIGNIIKAREFFDGM----DTRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDV 500

Query: 450 EPTIEHY-----GC------------------------------LVDILCRTGYLEEAKS 474
            P    Y     GC                               + +  + G + EA+ 
Sbjct: 501 TPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQK 560

Query: 475 TIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANN----LIKVA-PDTIGCYVVLS 526
             + +  + + V W ++++G   HG   +G+ AA      L K A PD I    VLS
Sbjct: 561 LFDLLNGK-DVVSWNAMITGYSQHG---MGKQAAKTFDDMLSKGAKPDYISYVAVLS 613



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 109/430 (25%), Positives = 187/430 (43%), Gaps = 76/430 (17%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +QLHA  +++       ++S L+ LY      +   A+ +F+  LQ  + V + +LI   
Sbjct: 290 KQLHAKVIRSLPQIDPYVASALIELYA--KCGSFKEAKRVFNS-LQDRNSVSWTVLIGGS 346

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
           +  +   +++ LF  +    +  D F L  +I G      +  G+Q+H L  K G     
Sbjct: 347 LQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAI 406

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
            V +SL+S+YAK G++     VF +M ++D+VSW  +I  Y + G +  A + FD M  R
Sbjct: 407 VVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMDTR 466

Query: 218 DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS--W---------------------- 253
           +  +W  ++  + + G  E   +++  M ++  V+  W                      
Sbjct: 467 NAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQI 526

Query: 254 ----------------NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRF 297
                           NA I  Y K G +  A +LFD +  +D+++WN+MI GY  +G  
Sbjct: 527 IGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMG 586

Query: 298 MEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLL 357
            +A +  + ML     P+  + V+ LS  +           HS +V+         G L 
Sbjct: 587 KQAAKTFDDMLSKGAKPDYISYVAVLSGCS-----------HSGLVQE--------GKLY 627

Query: 358 IQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA 417
             M ++   I   L            H++ M+  LG  G  T+A DL +K   M MKPTA
Sbjct: 628 FDMMTRVHGISPGLE-----------HFSCMVDLLGRAGHLTEAKDLIDK---MPMKPTA 673

Query: 418 ITFIGVLNAC 427
             +  +L+AC
Sbjct: 674 EVWGALLSAC 683



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 135/312 (43%), Gaps = 39/312 (12%)

Query: 219 LFSWTCLVDGFSKCGKVEIAREIFYR-MPNRNLVSWNAMINGYMKAGDVDSACELFDDME 277
           +F    L+  +  CG +  AR +    +   N+++ N M+NGY K G +  A ELFD M 
Sbjct: 39  VFLQNTLLHAYFSCGALSDARRLLRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMP 98

Query: 278 IRDLITWNSMIAGYELNGRFMEALELLETM-LIGDVLPNDATLVSALSAVAGLAVLNKGR 336
            RD+ +WN++++GY    RF++ LE   +M   GD LPN  T    + +   L       
Sbjct: 99  RRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKSCGALGCRELAP 158

Query: 337 WMHSYIVKNGFVVDGVLGTLLIQMYSKCG------------------------------- 365
            +     K  F  D  + T L+ M+ +CG                               
Sbjct: 159 QLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLY 218

Query: 366 SIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN 425
            I+ A+  F  ++++ V  W  MI  L   G   +AL L  +M R G++  + T+   L 
Sbjct: 219 GIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLT 278

Query: 426 ACSHAGLVNDGRRYFNMMINDYGIEPTIEHY--GCLVDILCRTGYLEEAKSTIESMPMRP 483
           AC+    +  G++    +I      P I+ Y    L+++  + G  +EAK    S+  R 
Sbjct: 279 ACARLFSLGWGKQLHAKVIRSL---PQIDPYVASALIELYAKCGSFKEAKRVFNSLQDR- 334

Query: 484 NFVIWMSLLSGA 495
           N V W  L+ G+
Sbjct: 335 NSVSWTVLIGGS 346


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 242/642 (37%), Positives = 347/642 (54%), Gaps = 41/642 (6%)

Query: 88  VLYNLLIKCYVFNQRSHEALTLFCDLL-DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHG 146
           V YN LI  +        ++ L+  LL +  + P   TL  +I  A+ L     G  +H 
Sbjct: 111 VSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHSVHC 170

Query: 147 LVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEV 206
            V +LGFG   FV S LV MYAK G I   RRVF  M+ K +V +N LI G ++   +E 
Sbjct: 171 QVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIED 230

Query: 207 AMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR------------------ 248
           A  LF  M DRD  +WT +V G ++ G    A ++F RM                     
Sbjct: 231 AKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGA 290

Query: 249 ---------------------NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSM 287
                                N+   +A+++ Y K   +  A  +F  M  R++I+W +M
Sbjct: 291 LAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAM 350

Query: 288 IAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGF 347
           I GY  N    EA+     M +  + P+D TL S +S+ A LA L +G   H   + +G 
Sbjct: 351 IVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGL 410

Query: 348 VVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNK 407
           +    +   L+ +Y KCGSIE A  +F  +S      WTA++ G    G A + +DLF K
Sbjct: 411 MRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEK 470

Query: 408 MCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTG 467
           M   G+KP  +TFIGVL+ACS AGLV  G  YF+ M  D+ I P  +HY C++D+  R+G
Sbjct: 471 MLVNGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHDIVPIDDHYTCMIDLYSRSG 530

Query: 468 YLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSN 527
             +EA+  I+ MP  P+   W +LLS  R  GN +IG++AA NL++  P     YV+L +
Sbjct: 531 RFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCS 590

Query: 528 IYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSE 587
           ++AA GQW +V+ +R  M+ R  +K+PG S I+++  +H F   D+SHP +  I+ KL  
Sbjct: 591 MHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSSRIYEKLEW 650

Query: 588 MRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLR 647
           + +K+   G+ PD + VL  + D  +K   + +HSE+LAIAFGLI V    PIRIVKNLR
Sbjct: 651 LNSKMAEEGYKPDVSSVLHDVAD-ADKVHMISHHSEKLAIAFGLIFVPQEMPIRIVKNLR 709

Query: 648 VCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           VC DCH+ TK +S I  R+I+VRD  RFH F +G+CSC DFW
Sbjct: 710 VCVDCHNATKFISKITGRDILVRDAVRFHKFSDGTCSCGDFW 751



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 127/486 (26%), Positives = 210/486 (43%), Gaps = 81/486 (16%)

Query: 138 IKEGKQIHGLVFKLGF-GFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLID 196
           ++    +H L+ K        F+L+ L++ YAK G +   RRVFD M D +L + N L+ 
Sbjct: 28  VRVAGAVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLS 87

Query: 197 GYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCG----KVEIAREIFYR---MPNRN 249
                  V    +LF  MP+RD  S+  L+ GFS  G     V++ R +       P R 
Sbjct: 88  ALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRI 147

Query: 250 LVSW---------------------------------NAMINGYMKAGDVDSACELFDDM 276
            +S                                  + +++ Y K G +  A  +F +M
Sbjct: 148 TLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEM 207

Query: 277 EI-------------------------------RDLITWNSMIAGYELNGRFMEALELLE 305
           E                                RD ITW +M+ G   NG  +EAL++  
Sbjct: 208 EAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFR 267

Query: 306 TMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCG 365
            M    V  +  T  S L+A   LA   +G+ +H+YI +  +  +  +G+ L+ MYSKC 
Sbjct: 268 RMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCR 327

Query: 366 SIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN 425
           SI  A  VFR ++ + +  WTAMIVG G +  + +A+  F++M   G+KP   T   V++
Sbjct: 328 SIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVIS 387

Query: 426 ACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNF 485
           +C++   + +G ++  + +   G+   I     LV +  + G +E+A    + M      
Sbjct: 388 SCANLASLEEGAQFHCLALVS-GLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQ- 445

Query: 486 VIWMSLLSGARNHGNK----DIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEV 541
           V W +L++G    G      D+ E    N +K  PD +    VLS   + AG  +K  + 
Sbjct: 446 VSWTALVTGYAQFGKAKETIDLFEKMLVNGLK--PDGVTFIGVLSAC-SRAGLVEKGCDY 502

Query: 542 REMMKK 547
            + M+K
Sbjct: 503 FDSMQK 508



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 85/340 (25%), Positives = 156/340 (45%), Gaps = 17/340 (5%)

Query: 40  LHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVF 99
              +  KT ++Y++ I+  L    ++        A+ +F  ++   S+  +  ++     
Sbjct: 204 FQEMEAKTVVMYNTLITGLLRCKMIED-------AKGLFQLMVDRDSIT-WTTMVTGLTQ 255

Query: 100 NQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFV 159
           N    EAL +F  +    +  D +T   ++     L A +EGKQIH  + +  +  + FV
Sbjct: 256 NGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYITRTWYEDNVFV 315

Query: 160 LSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP---- 215
            S+LV MY+K   I L   VF  M  ++++SW  +I GY +    E A++ F EM     
Sbjct: 316 GSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGI 375

Query: 216 DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSW----NAMINGYMKAGDVDSACE 271
             D F+   ++   +    +E   +         L+ +    NA++  Y K G ++ A  
Sbjct: 376 KPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHR 435

Query: 272 LFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAV 331
           LFD+M   D ++W +++ GY   G+  E ++L E ML+  + P+  T +  LSA +   +
Sbjct: 436 LFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLVNGLKPDGVTFIGVLSACSRAGL 495

Query: 332 LNKG-RWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESA 370
           + KG  +  S    +  V      T +I +YS+ G  + A
Sbjct: 496 VEKGCDYFDSMQKDHDIVPIDDHYTCMIDLYSRSGRFKEA 535



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 145/311 (46%), Gaps = 38/311 (12%)

Query: 32  STHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYN 91
           +  +E +Q+HA   +T    +  + S L+ +Y      ++  A ++F R+    +++ + 
Sbjct: 292 AASEEGKQIHAYITRTWYEDNVFVGSALVDMY--SKCRSIRLAEAVFRRMTCR-NIISWT 348

Query: 92  LLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKL 151
            +I  Y  N  S EA+  F ++    + PD+FTL  VI   A L +++EG Q H L    
Sbjct: 349 AMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVS 408

Query: 152 GFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLF 211
           G      V ++LV++Y K G I+   R+FD M   D VSW  L+ GY + G+ +  + LF
Sbjct: 409 GLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLF 468

Query: 212 DEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACE 271
           ++M          LV+G    G                 V++  +++   +AG V+  C+
Sbjct: 469 EKM----------LVNGLKPDG-----------------VTFIGVLSACSRAGLVEKGCD 501

Query: 272 LFDDMEI-RDLIT----WNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326
            FD M+   D++     +  MI  Y  +GRF EA E ++ M         ATL+S+    
Sbjct: 502 YFDSMQKDHDIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLR 561

Query: 327 AGLAVLNKGRW 337
             + +   G+W
Sbjct: 562 GNMEI---GKW 569


>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
 gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 201/426 (47%), Positives = 286/426 (67%), Gaps = 1/426 (0%)

Query: 264 GDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSAL 323
           G ++ A ++FD+M   D ++W++MI GY   GR  +A+ L   M I  V P++ T+VS L
Sbjct: 63  GGIEFARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVL 122

Query: 324 SAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVG 383
           SA  GL  L  G+W+ SY+ K     +  L   LI M++KCG ++ A  +FR++ ++ + 
Sbjct: 123 SACTGLGALELGKWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIV 182

Query: 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMM 443
            WT++I GL MHG   +A+ +F +M R G+ P  + FIG+L+ACSH+GLV+ G+RYF+ M
Sbjct: 183 SWTSVIGGLAMHGRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACSHSGLVDKGKRYFDSM 242

Query: 444 INDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDI 503
             D+ I P IEHYGC+VD+LCR G ++EA   ++ MP+ PN V+W +L++  R HG   +
Sbjct: 243 RKDFSIVPKIEHYGCMVDMLCRAGLVKEALKFVQEMPIDPNPVVWRTLINACRAHGELKL 302

Query: 504 GEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRG 563
           GE     LI+  P     YV+LSNIYA    W+K + +RE M  +G +K PGS+ IE   
Sbjct: 303 GEKITRQLIRNEPMHESNYVLLSNIYAKMSDWEKKTRIREAMDMKGMKKIPGSTMIELDN 362

Query: 564 VLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSE 623
            ++EFV GDKSH Q+ EI+  + EM  ++K AG++P TT+VLL I+D+ +KE  L  HSE
Sbjct: 363 EIYEFVAGDKSHAQSKEIYEMVDEMGKEMKRAGYMPTTTEVLLDIDDE-DKEDTLNRHSE 421

Query: 624 RLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSC 683
           +LAIAF L+N    + IRIVKNLRVC+DCHS +K +S IYNREI+VRD +RFHHFKNG C
Sbjct: 422 KLAIAFALLNTPPGTLIRIVKNLRVCDDCHSASKFISKIYNREIVVRDRNRFHHFKNGLC 481

Query: 684 SCKDFW 689
           SC+DFW
Sbjct: 482 SCRDFW 487



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 78/265 (29%), Positives = 125/265 (47%), Gaps = 13/265 (4%)

Query: 307 MLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKC-- 364
           ML    LPN  T    L A AG+  LN G+ +H  ++K GF  +  +   L+ MY  C  
Sbjct: 1   MLERKKLPNKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRG 60

Query: 365 --GSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIG 422
             G IE A  VF  + K     W+AMI G    G ++ A++LF +M   G+ P  IT + 
Sbjct: 61  GEGGIEFARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVS 120

Query: 423 VLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMR 482
           VL+AC+  G +  G ++    +    ++  +E    L+D+  + G +++A +   SM  R
Sbjct: 121 VLSACTGLGALELG-KWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRER 179

Query: 483 PNFVIWMSLLSGARNHGNKDIGEYAANNLIK--VAPDTIGCYVVLSNIYAAAGQWDKVSE 540
            N V W S++ G   HG           +++  V PD +  ++ L +  + +G  DK   
Sbjct: 180 -NIVSWTSVIGGLAMHGRGVEAVAVFEEMVRSGVTPDDV-VFIGLLSACSHSGLVDKGKR 237

Query: 541 VREMMKKRGFRKDPGSSSIEHRGVL 565
             + M+K  F   P    IEH G +
Sbjct: 238 YFDSMRK-DFSIVP---KIEHYGCM 258



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 115/239 (48%), Gaps = 15/239 (6%)

Query: 71  LHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIK 130
           + +AR +FD + +  S V ++ +I  YV   RS +A+ LF ++  + + PD  T+  V+ 
Sbjct: 65  IEFARKVFDEMYKSDS-VSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVLS 123

Query: 131 GAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVS 190
               LGA++ GK +   V K     +  + ++L+ M+AK G++D    +F +M ++++VS
Sbjct: 124 ACTGLGALELGKWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIVS 183

Query: 191 WNCLIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKCGKVEIAREIFYR 244
           W  +I G    G    A+ +F+EM      PD  +F    L+   S  G V+  +  F  
Sbjct: 184 WTSVIGGLAMHGRGVEAVAVFEEMVRSGVTPDDVVF--IGLLSACSHSGLVDKGKRYFDS 241

Query: 245 MPNR-----NLVSWNAMINGYMKAGDVDSACELFDDMEIR-DLITWNSMIAGYELNGRF 297
           M         +  +  M++   +AG V  A +   +M I  + + W ++I     +G  
Sbjct: 242 MRKDFSIVPKIEHYGCMVDMLCRAGLVKEALKFVQEMPIDPNPVVWRTLINACRAHGEL 300


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 231/683 (33%), Positives = 367/683 (53%), Gaps = 82/683 (12%)

Query: 88  VLYNLLIKCYVFNQRSHEALTLFCDLL--DRFLLPDNFTLPCVIKGAARLG--AIKEGKQ 143
           VL+N +I  +     +  A+++F  LL  D  L PD+++   ++    ++   A+    Q
Sbjct: 123 VLHNAMISAFARASLAAPAVSVFRSLLASDDSLRPDDYSFTSLLSAVGQMHDLAVSHCTQ 182

Query: 144 IHGLVFKLGFGFDKFVLSSLVSMYAKF--------------------------------- 170
           +H  V KLG G    V ++L+++Y K                                  
Sbjct: 183 LHCAVHKLGAGAVLSVSNALIALYMKCDAPGVTRDARKVLDEMPEKDELTWTTIVVGHVR 242

Query: 171 -GEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCL 225
            G++   R  F+ +D +  V WN +I GYV+ G    A +LF  M  +    D F++T L
Sbjct: 243 KGDVHAARSAFEEIDGEFDVVWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSL 302

Query: 226 VDG---------------------------------------FSKCGKVEIAREIFYRMP 246
           +                                         +SK GK+ +A +IF  M 
Sbjct: 303 LSACANAGFFLHGKSVHGQFIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMT 362

Query: 247 NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLET 306
            +++VSWN +++GY+++G +D+A  +F +M  +  ++W  M++GY   G   +AL+L   
Sbjct: 363 LKDVVSWNTILSGYIESGCLDNAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQ 422

Query: 307 MLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGS 366
           M   DV P D T   A++A   L  L  G+ +H+++V+ GF      G  L+ MY++CG+
Sbjct: 423 MRSEDVKPCDYTYAGAVAACGELGALKHGKQLHAHLVQCGFEASNSAGNALLTMYARCGA 482

Query: 367 IESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNA 426
           ++ A  VF  +       W AMI  LG HG   +AL+LF++M   G+ P  I+F+ +L A
Sbjct: 483 VKDARLVFLVMPNVDSVSWNAMISALGQHGHGREALELFDQMVAQGIYPDRISFLTILTA 542

Query: 427 CSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFV 486
           C+HAGLV+DG +YF  M  D+GI P  +HY  L+D+L R G + EA+  I++MP  P   
Sbjct: 543 CNHAGLVDDGFQYFESMERDFGISPGEDHYARLIDLLGRAGRIGEARDLIKTMPFEPTPA 602

Query: 487 IWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMK 546
           IW ++LSG R +G+ ++G YAA+ L K+ P+  G Y++LSN Y+AAG+W   + VR++M+
Sbjct: 603 IWEAILSGCRINGDMELGAYAADQLFKMVPEHDGTYILLSNTYSAAGRWVDAARVRKLMR 662

Query: 547 KRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLL 606
            RG +K+PG S IE    +H F+VGD  HP   E++  L  +  K++  G+VPDT   L 
Sbjct: 663 DRGVKKEPGCSWIEVGNKVHVFLVGDTKHPDAHEVYRFLEMVGAKMRKLGYVPDTKFALQ 722

Query: 607 CIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNRE 666
            +    EKE  L  HSERLA++FGL+ + + + + ++KNL++C DCH+    +S    RE
Sbjct: 723 DMAPH-EKEYVLFAHSERLAVSFGLLKLPAGATVTVLKNLKICGDCHTAMMFMSRAVGRE 781

Query: 667 IIVRDNSRFHHFKNGSCSCKDFW 689
           I+VRD  RFHHFK+G CSC ++W
Sbjct: 782 IVVRDVRRFHHFKDGECSCGNYW 804



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 135/299 (45%), Gaps = 23/299 (7%)

Query: 59  LLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFL 118
           +LS Y++     L  A  IF   + + S + + +++  YV    + +AL LF  +    +
Sbjct: 372 ILSGYIES--GCLDNAARIFKE-MPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDV 428

Query: 119 LPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRR 178
            P ++T    +     LGA+K GKQ+H  + + GF       ++L++MYA+ G +   R 
Sbjct: 429 KPCDYTYAGAVAACGELGALKHGKQLHAHLVQCGFEASNSAGNALLTMYARCGAVKDARL 488

Query: 179 VFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKC 232
           VF  M + D VSWN +I    + G    A++LFD+M      PDR   S+  ++   +  
Sbjct: 489 VFLVMPNVDSVSWNAMISALGQHGHGREALELFDQMVAQGIYPDR--ISFLTILTACNHA 546

Query: 233 GKVEIAREIFYRMPNRNLVS-----WNAMINGYMKAGDVDSACELFDDMEIRDL-ITWNS 286
           G V+   + F  M     +S     +  +I+   +AG +  A +L   M        W +
Sbjct: 547 GLVDDGFQYFESMERDFGISPGEDHYARLIDLLGRAGRIGEARDLIKTMPFEPTPAIWEA 606

Query: 287 MIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKN 345
           +++G  +NG  ME        L   V  +D T +  LS     A    GRW+ +  V+ 
Sbjct: 607 ILSGCRINGD-MELGAYAADQLFKMVPEHDGTYI-LLSNTYSAA----GRWVDAARVRK 659


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 232/657 (35%), Positives = 375/657 (57%), Gaps = 10/657 (1%)

Query: 40  LHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVF 99
           +HA+ +K+N      +S+ L+++Y +     +  A  +F  +L     V +N L+   V 
Sbjct: 273 IHAVILKSNHFTDVYVSNALIAMYAN--CGQMEDAERVFKSML-FKDCVSWNTLLSGMVQ 329

Query: 100 NQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFV 159
           N    +A+  F D+ D    PD  ++  +I  + R   +  G ++H    K G   +  +
Sbjct: 330 NDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHGIDSNMHI 389

Query: 160 LSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKK----GEVEVAMKLFDEMP 215
            +SL+ MY K   +      F+ M +KDL+SW  +I GY +       + +  K+  E  
Sbjct: 390 GNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECHLDALNLLRKVQLEKM 449

Query: 216 DRDLFSWTCLVDGFSKCGKVEIAREIF-YRMPN--RNLVSWNAMINGYMKAGDVDSACEL 272
           D D      ++   S     ++ +EI  Y +     +++  NA++N Y +   VD A  +
Sbjct: 450 DVDPMMIGSILLACSGLKSEKLIKEIHGYVLKGGLADILIQNAIVNVYGELALVDYARHV 509

Query: 273 FDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVL 332
           F+ +  +D+++W SMI     NG  +EALEL  +++  ++ P+  TLVS L A A L+ L
Sbjct: 510 FESINSKDIVSWTSMITCCVHNGLAIEALELFNSLIETNIEPDLITLVSVLYAAAALSSL 569

Query: 333 NKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGL 392
            KG+ +H ++++ GF ++G++   L+ MY++CG++E+A  +F  + ++ +  WT+MI   
Sbjct: 570 KKGKEIHGFLIRKGFFLEGLIANSLVDMYARCGTMENARNIFNYVKQRDLILWTSMINAN 629

Query: 393 GMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT 452
           GMHG    A+DLF+KM    + P  ITF+ +L ACSH+GLV +G+++F +M N+Y +EP 
Sbjct: 630 GMHGCGKDAIDLFSKMTDENVLPDHITFLALLYACSHSGLVVEGKQHFEIMKNEYKLEPW 689

Query: 453 IEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLI 512
            EHY CLVD+L R+  LEEA   + +MP+ P+  +W +LL   R H N D+GE AA  L+
Sbjct: 690 PEHYACLVDLLARSNSLEEAYHFVRNMPIEPSAEVWCALLGACRIHSNNDLGEVAAKKLL 749

Query: 513 KVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGD 572
           ++  +  G YV++SN +AA G+W+ V EVR +MK    +K PG S IE    +H F+  D
Sbjct: 750 QLNTENSGNYVLVSNTFAADGRWNDVEEVRSIMKGNKLKKKPGCSWIEVENKIHTFMARD 809

Query: 573 KSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLI 632
           KSHPQ + I+ KL++    LK  G     T+++     ++EK   L  HSERLA+ +GL+
Sbjct: 810 KSHPQCNNIYLKLAQFTKLLKEKGGYRAQTKLVFHDVCEEEKTQMLYGHSERLALGYGLL 869

Query: 633 NVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
                + +RI KNLR+C+DCH+  K+ S I  R ++VRD SRFHHF+ G CSC DFW
Sbjct: 870 VTSKGTCLRITKNLRICDDCHAFFKIASEISQRTLVVRDASRFHHFERGLCSCGDFW 926



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 139/521 (26%), Positives = 254/521 (48%), Gaps = 24/521 (4%)

Query: 27  ILKFSSTHKETQ---QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDR-IL 82
           +LK     KE +   ++H ++VK        + + L+++Y      +L  AR +FD  ++
Sbjct: 154 VLKACGAFKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAK--CGDLGGARVLFDSGLM 211

Query: 83  QHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGK 142
           +    V +N +I  +V    S EAL+LF  + +  +  + +T    ++       IK G+
Sbjct: 212 EKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGR 271

Query: 143 QIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKG 202
            IH ++ K     D +V ++L++MYA  G+++   RVF +M  KD VSWN L+ G V+  
Sbjct: 272 GIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQND 331

Query: 203 EVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREIF-YRMP---NRNLVSWN 254
               A+  F +M D     D  S   ++    +   +    E+  Y +    + N+   N
Sbjct: 332 MYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHGIDSNMHIGN 391

Query: 255 AMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLP 314
           ++I+ Y K   V      F+ M  +DLI+W ++IAGY  N   ++AL LL  + +  +  
Sbjct: 392 SLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECHLDALNLLRKVQLEKMDV 451

Query: 315 NDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVF 374
           +   + S L A +GL      + +H Y++K G + D ++   ++ +Y +   ++ A  VF
Sbjct: 452 DPMMIGSILLACSGLKSEKLIKEIHGYVLKGG-LADILIQNAIVNVYGELALVDYARHVF 510

Query: 375 RAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVN 434
            +I+ K +  WT+MI     +G+A +AL+LFN +    ++P  IT + VL A +    + 
Sbjct: 511 ESINSKDIVSWTSMITCCVHNGLAIEALELFNSLIETNIEPDLITLVSVLYAAAALSSLK 570

Query: 435 DGRRYFNMMIND-YGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLS 493
            G+     +I   + +E  I +   LVD+  R G +E A++    +  R + ++W S+++
Sbjct: 571 KGKEIHGFLIRKGFFLEGLIAN--SLVDMYARCGTMENARNIFNYVKQR-DLILWTSMIN 627

Query: 494 GARNHG-NKD-IGEYAANNLIKVAPDTIGCYVVLSNIYAAA 532
               HG  KD I  ++      V PD I     L+ +YA +
Sbjct: 628 ANGMHGCGKDAIDLFSKMTDENVLPDHI---TFLALLYACS 665



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 147/571 (25%), Positives = 270/571 (47%), Gaps = 37/571 (6%)

Query: 4   QTLQH--SSPIHALQQHLPSRLHWNILKFSSTHK---ETQQLHALSVKT-NLIYHSGISS 57
           Q+L H  + P+    +    + +   L+  ++HK   + QQLHA  +KT N +    + +
Sbjct: 27  QSLTHFFTDPLPTTTRFPLQQAYSQALELCASHKALPQGQQLHAHFLKTQNYLDSVFLDT 86

Query: 58  RLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRF 117
           + + +Y      + + A  +FD++ +  ++  +N +I   V   R  EA+ L+ ++    
Sbjct: 87  KFVHMY--GKCGSFYDAVKVFDKMSER-TIFTWNAMIGACVSAGRYVEAIELYKEMRVLG 143

Query: 118 LLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGR 177
           +  D FT PCV+K        + G +IHG+  K G+G   FV ++L++MYAK G++   R
Sbjct: 144 VSLDAFTFPCVLKACGAFKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGAR 203

Query: 178 RVFDA--MDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWT-CLVDGFSKCGK 234
            +FD+  M+  D VSWN +I  +V +GE   A+ LF  M +  + S T   V     C  
Sbjct: 204 VLFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEG 263

Query: 235 ---VEIAREIFYRMPNRN----LVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSM 287
              ++I R I   +   N    +   NA+I  Y   G ++ A  +F  M  +D ++WN++
Sbjct: 264 PTFIKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTL 323

Query: 288 IAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGF 347
           ++G   N  + +A+   + M      P+  ++++ ++A    A L  G  +H+Y +K+G 
Sbjct: 324 LSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHGI 383

Query: 348 VVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNK 407
             +  +G  LI MY KC  ++   + F  + +K +  WT +I G   +     AL+L  K
Sbjct: 384 DSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECHLDALNLLRK 443

Query: 408 MCRMGMKPTAITFIGVLNACS---HAGLVNDGRRY-FNMMINDYGIEPTIEHYGCLVDIL 463
           +    M    +    +L ACS      L+ +   Y     + D  I+  I      V++ 
Sbjct: 444 VQLEKMDVDPMMIGSILLACSGLKSEKLIKEIHGYVLKGGLADILIQNAI------VNVY 497

Query: 464 CRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIK--VAPDTIGC 521
                ++ A+   ES+  + + V W S+++   ++G         N+LI+  + PD I  
Sbjct: 498 GELALVDYARHVFESINSK-DIVSWTSMITCCVHNGLAIEALELFNSLIETNIEPDLI-- 554

Query: 522 YVVLSNIYAAAG--QWDKVSEVREMMKKRGF 550
             ++S +YAAA      K  E+   + ++GF
Sbjct: 555 -TLVSVLYAAAALSSLKKGKEIHGFLIRKGF 584


>gi|238478502|ref|NP_173097.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191338|gb|AEE29459.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 937

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 238/669 (35%), Positives = 375/669 (56%), Gaps = 21/669 (3%)

Query: 34  HKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRIL--QHPS--LVL 89
            K  + +H L VK        + + LL +Y           RS+   ++  Q P+  L+ 
Sbjct: 277 QKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGA-------GRSVEANLVFKQMPTKDLIS 329

Query: 90  YNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVF 149
           +N L+  +V + RS +AL L C ++      +  T    +         ++G+ +HGLV 
Sbjct: 330 WNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVV 389

Query: 150 KLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMK 209
             G  +++ + ++LVSMY K GE+   RRV   M  +D+V+WN LI GY +  + + A+ 
Sbjct: 390 VSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALA 449

Query: 210 LFDEMPDRDLFS-WTCLVDGFSKC----GKVEIAREIFYRMPNRNLVS----WNAMINGY 260
            F  M    + S +  +V   S C      +E  + +   + +    S     N++I  Y
Sbjct: 450 AFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMY 509

Query: 261 MKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLV 320
            K GD+ S+ +LF+ ++ R++ITWN+M+A    +G   E L+L+  M    V  +  +  
Sbjct: 510 AKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFS 569

Query: 321 SALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKK 380
             LSA A LAVL +G+ +H   VK GF  D  +      MYSKCG I   + +      +
Sbjct: 570 EGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNR 629

Query: 381 KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYF 440
            +  W  +I  LG HG   +    F++M  MG+KP  +TF+ +L ACSH GLV+ G  Y+
Sbjct: 630 SLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYY 689

Query: 441 NMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGN 500
           +M+  D+G+EP IEH  C++D+L R+G L EA++ I  MPM+PN ++W SLL+  + HGN
Sbjct: 690 DMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGN 749

Query: 501 KDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIE 560
            D G  AA NL K+ P+    YV+ SN++A  G+W+ V  VR+ M  +  +K    S ++
Sbjct: 750 LDRGRKAAENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVK 809

Query: 561 HRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELEN 620
            +  +  F +GD++HPQT EI++KL +++  +K +G+V DT+Q L    D+++KE  L N
Sbjct: 810 LKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIKESGYVADTSQALQDT-DEEQKEHNLWN 868

Query: 621 HSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKN 680
           HSERLA+A+ L++    S +RI KNLR+C+DCHSV K +S +  R I++RD  RFHHF+ 
Sbjct: 869 HSERLALAYALMSTPEGSTVRIFKNLRICSDCHSVYKFVSRVIGRRIVLRDQYRFHHFER 928

Query: 681 GSCSCKDFW 689
           G CSCKD+W
Sbjct: 929 GLCSCKDYW 937



 Score =  152 bits (384), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 121/479 (25%), Positives = 216/479 (45%), Gaps = 12/479 (2%)

Query: 32  STHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYN 91
           S  +E  Q+H    K+ L+    +S+ +L LY    +  +  +R +F+  +   ++V + 
Sbjct: 73  SMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGL--VSCSRKVFEE-MPDRNVVSWT 129

Query: 92  LLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKL 151
            L+  Y       E + ++  +    +  +  ++  VI     L     G+QI G V K 
Sbjct: 130 SLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKS 189

Query: 152 GFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLF 211
           G      V +SL+SM    G +D    +FD M ++D +SWN +   Y + G +E + ++F
Sbjct: 190 GLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIF 249

Query: 212 DEMPD-RDLFSWTCLVDGFSKCGKVEIAR------EIFYRMPNRNLVS-WNAMINGYMKA 263
             M    D  + T +    S  G V+  +       +  +M   ++V   N ++  Y  A
Sbjct: 250 SLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGA 309

Query: 264 GDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSAL 323
           G    A  +F  M  +DLI+WNS++A +  +GR ++AL LL +M+      N  T  SAL
Sbjct: 310 GRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSAL 369

Query: 324 SAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVG 383
           +A        KGR +H  +V +G   + ++G  L+ MY K G +  +  V   + ++ V 
Sbjct: 370 AACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVV 429

Query: 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMM 443
            W A+I G        +AL  F  M   G+    IT + VL+AC   G + +  +  +  
Sbjct: 430 AWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAY 489

Query: 444 INDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKD 502
           I   G E        L+ +  + G L  ++     +  R N + W ++L+   +HG+ +
Sbjct: 490 IVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNR-NIITWNAMLAANAHHGHGE 547



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 115/497 (23%), Positives = 197/497 (39%), Gaps = 68/497 (13%)

Query: 113 LLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVS------- 165
           L D   + +  +   ++ G  R+G   EG +    +  LG     FV++SLV+       
Sbjct: 14  LFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGS 73

Query: 166 -----------------------------MYAKFGEIDLGRRVFDAMDDKDLVSWNCLID 196
                                        +Y  +G +   R+VF+ M D+++VSW  L+ 
Sbjct: 74  MFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMV 133

Query: 197 GYVKKGEVEVAMKLFDEMPDRDL-FSWTCLVDGFSKCGKVE---IAREIFYRMPNRNLVS 252
           GY  KGE E  + ++  M    +  +   +    S CG ++   + R+I  ++    L S
Sbjct: 134 GYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLES 193

Query: 253 ----WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETML 308
                N++I+     G+VD A  +FD M  RD I+WNS+ A Y  NG   E+  +   M 
Sbjct: 194 KLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMR 253

Query: 309 IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIE 368
                 N  T+ + LS +  +     GR +H  +VK GF     +   L++MY+  G   
Sbjct: 254 RFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSV 313

Query: 369 SALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACS 428
            A  VF+ +  K +  W +++      G +  AL L   M   G     +TF   L AC 
Sbjct: 314 EANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACF 373

Query: 429 HAGLVNDGR----------RYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIES 478
                  GR           ++N +I +            LV +  + G + E++  +  
Sbjct: 374 TPDFFEKGRILHGLVVVSGLFYNQIIGN-----------ALVSMYGKIGEMSESRRVLLQ 422

Query: 479 MPMRPNFVIWMSLLSGARNHGNKD--IGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWD 536
           MP R + V W +L+ G     + D  +  +    +  V+ + I    VLS         +
Sbjct: 423 MPRR-DVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLE 481

Query: 537 KVSEVREMMKKRGFRKD 553
           +   +   +   GF  D
Sbjct: 482 RGKPLHAYIVSAGFESD 498



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 118/245 (48%), Gaps = 9/245 (3%)

Query: 260 YMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATL 319
           Y K G V  A  LFD M +R+ ++WN+M++G    G ++E +E    M    + P+   +
Sbjct: 2   YTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVI 61

Query: 320 VSALSAVA-GLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS 378
            S ++A     ++  +G  +H ++ K+G + D  + T ++ +Y   G +  +  VF  + 
Sbjct: 62  ASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMP 121

Query: 379 KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVND--- 435
            + V  WT+++VG    G   + +D++  M   G+     +   V+++C   GL+ D   
Sbjct: 122 DRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSC---GLLKDESL 178

Query: 436 GRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGA 495
           GR+    ++   G+E  +     L+ +L   G ++ A    + M  R + + W S+ +  
Sbjct: 179 GRQIIGQVVKS-GLESKLAVENSLISMLGSMGNVDYANYIFDQMSER-DTISWNSIAAAY 236

Query: 496 RNHGN 500
             +G+
Sbjct: 237 AQNGH 241



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/374 (20%), Positives = 145/374 (38%), Gaps = 73/374 (19%)

Query: 166 MYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD--------- 216
           MY KFG +   R +FD M  ++ VSWN ++ G V+ G     M+ F +M D         
Sbjct: 1   MYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFV 60

Query: 217 -------------------------------RDLFSWTCLVDGFSKCGKVEIAREIFYRM 245
                                           D++  T ++  +   G V  +R++F  M
Sbjct: 61  IASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEM 120

Query: 246 PNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLE 305
           P+RN+VSW +++ GY   G+ +                               E +++ +
Sbjct: 121 PDRNVVSWTSLMVGYSDKGEPE-------------------------------EVIDIYK 149

Query: 306 TMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCG 365
            M    V  N+ ++   +S+   L   + GR +   +VK+G      +   LI M    G
Sbjct: 150 GMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMG 209

Query: 366 SIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN 425
           +++ A  +F  +S++    W ++      +G   ++  +F+ M R   +  + T   +L+
Sbjct: 210 NVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLS 269

Query: 426 ACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNF 485
              H      GR    +++   G +  +     L+ +    G   EA    + MP + + 
Sbjct: 270 VLGHVDHQKWGRGIHGLVVK-MGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTK-DL 327

Query: 486 VIWMSLLSGARNHG 499
           + W SL++   N G
Sbjct: 328 ISWNSLMASFVNDG 341



 Score = 59.3 bits (142), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 66/152 (43%), Gaps = 19/152 (12%)

Query: 360 MYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAIT 419
           MY+K G ++ A  +F  +  +    W  M+ G+   G+  + ++ F KMC +G+KP++  
Sbjct: 1   MYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFV 60

Query: 420 FIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRT---------GYLE 470
              ++ AC  +G         +M      +   +   G L D+   T         G + 
Sbjct: 61  IASLVTACGRSG---------SMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVS 111

Query: 471 EAKSTIESMPMRPNFVIWMSLLSGARNHGNKD 502
            ++   E MP R N V W SL+ G  + G  +
Sbjct: 112 CSRKVFEEMPDR-NVVSWTSLMVGYSDKGEPE 142


>gi|224139038|ref|XP_002326752.1| predicted protein [Populus trichocarpa]
 gi|222834074|gb|EEE72551.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 228/566 (40%), Positives = 346/566 (61%), Gaps = 21/566 (3%)

Query: 138 IKEGKQIHGLVFKLGFGFDKFVLSSLVSMYA--KFGEIDLGRRVFDAMDDKDLVSWNCLI 195
           ++E KQ+H  V K     + F  S+LV+  A   +G +D    +F  +D      +N +I
Sbjct: 1   MEEFKQVHAQVLKWE---NSFCASNLVATCALSDWGSMDYACSIFRQIDQPGTFEFNTMI 57

Query: 196 DGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIARE-------IFYR 244
            GYV    +E A+ L+ EM +R    D F++  L   F  C  +    E       IF R
Sbjct: 58  RGYVNVMNMENALFLYYEMLERGVESDNFTYPAL---FKACASLRSIEEGMQIHGYIFKR 114

Query: 245 MPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELL 304
               +L   N++IN Y K G ++ +C +F+ M+ RD+ +W+++IA +   G + E L + 
Sbjct: 115 GLEGDLFVQNSLINMYGKCGKIELSCSVFEHMDRRDVASWSAIIAAHASLGMWSECLSVF 174

Query: 305 -ETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSK 363
            E    G   P ++ LVS LSA   L  L+ GR  H  +++N   ++ ++ T LI MY K
Sbjct: 175 GEMSREGSCRPEESILVSVLSACTHLGALDLGRCTHVTLLRNIREMNVIVQTSLIDMYVK 234

Query: 364 CGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGV 423
           CG IE  L++F+ + KK    ++ MI GL MHG   +AL +F+ M   G+KP  + ++GV
Sbjct: 235 CGCIEKGLSLFQRMVKKNQLSYSVMITGLAMHGRGMEALQVFSDMLEEGLKPDDVVYLGV 294

Query: 424 LNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRP 483
           L+AC+HAGLV++G + FN M  ++GIEPTI+HYGC+V ++ R G L +A   I SMP++P
Sbjct: 295 LSACNHAGLVDEGLQCFNRMKLEHGIEPTIQHYGCIVHLMGRAGMLNKALEHIRSMPIKP 354

Query: 484 NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVRE 543
           N V+W  LLS  + H N +IGE AA +L ++     G YVVLSN+YA A +W+ V+++R 
Sbjct: 355 NEVVWRGLLSACKFHHNLEIGEIAAKSLGELNSSNPGDYVVLSNMYARAKRWEDVAKIRT 414

Query: 544 MMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQ 603
            M ++GF + PG S ++    +++FV  D SHPQ   ++  + +M  +LK  G+ PDT+Q
Sbjct: 415 EMARKGFTQTPGFSLVQVERKIYKFVSQDMSHPQCKGMYEMIHQMEWQLKFEGYSPDTSQ 474

Query: 604 VLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIY 663
           VL  + D++EK   L+ HS++LA+AF LI+    +PIRI +NLR+CNDCH+ TKL+S IY
Sbjct: 475 VLFDV-DEEEKRQRLKAHSQKLAMAFALIHTSQGAPIRIARNLRMCNDCHTYTKLISVIY 533

Query: 664 NREIIVRDNSRFHHFKNGSCSCKDFW 689
            REI VRD +RFHHFK+G+CSC+D+W
Sbjct: 534 QREITVRDRNRFHHFKDGTCSCRDYW 559



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 113/407 (27%), Positives = 200/407 (49%), Gaps = 56/407 (13%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           +E +Q+HA  +K     +S  +S L++        ++ YA SIF +I Q P    +N +I
Sbjct: 2   EEFKQVHAQVLKWE---NSFCASNLVATCALSDWGSMDYACSIFRQIDQ-PGTFEFNTMI 57

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
           + YV       AL L+ ++L+R +  DNFT P + K  A L +I+EG QIHG +FK G  
Sbjct: 58  RGYVNVMNMENALFLYYEMLERGVESDNFTYPALFKACASLRSIEEGMQIHGYIFKRGLE 117

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
            D FV +SL++MY K G+I+L   VF+ MD +D+ SW+ +I  +   G     + +F EM
Sbjct: 118 GDLFVQNSLINMYGKCGKIELSCSVFEHMDRRDVASWSAIIAAHASLGMWSECLSVFGEM 177

Query: 215 -------PDRDLFSWTCLVDGFSKC---GKVEIAR----EIFYRMPNRNLVSWNAMINGY 260
                  P+  +     LV   S C   G +++ R     +   +   N++   ++I+ Y
Sbjct: 178 SREGSCRPEESI-----LVSVLSACTHLGALDLGRCTHVTLLRNIREMNVIVQTSLIDMY 232

Query: 261 MKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLV 320
           +K G ++    LF  M  ++ ++++ MI G  ++GR MEAL++   ML   + P+D   +
Sbjct: 233 VKCGCIEKGLSLFQRMVKKNQLSYSVMITGLAMHGRGMEALQVFSDMLEEGLKPDDVVYL 292

Query: 321 SALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKK 380
             LSA     ++++G                      +Q +++   +E  +       + 
Sbjct: 293 GVLSACNHAGLVDEG----------------------LQCFNRM-KLEHGI-------EP 322

Query: 381 KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNAC 427
            + H+  ++  +G  GM  +AL+       M +KP  + + G+L+AC
Sbjct: 323 TIQHYGCIVHLMGRAGMLNKALEHIRS---MPIKPNEVVWRGLLSAC 366


>gi|296087599|emb|CBI34855.3| unnamed protein product [Vitis vinifera]
          Length = 956

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 235/680 (34%), Positives = 375/680 (55%), Gaps = 70/680 (10%)

Query: 70  NLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVI 129
           NL   + I  +I     +V +  L+  Y  N  +++++ +F ++L   + PD   +  ++
Sbjct: 287 NLEEGKKI-HKIAVWKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKIL 345

Query: 130 KGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLV 189
             ++ LG  ++   +HG V + GF  + FV +SL+ +Y+K G +    ++F  M  +D+V
Sbjct: 346 AASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVV 405

Query: 190 SWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREI-------- 241
            W+ +I  Y   G    A+++FD+M          ++ G + C ++ +  ++        
Sbjct: 406 IWSSMIAAYGIHGRGGEALEIFDQMIQ--------VMQGITSCYQISMQPQVQPPLAITS 457

Query: 242 -------------FYR-----------------------MPNRNLVSWNAMING------ 259
                        FY                        M   N+ ++    +       
Sbjct: 458 CTLATHIPWKVKAFYMRAHFRWLGHFWEIFPTYPFQAADMSKSNIFAYGLQYDSRILTKF 517

Query: 260 ---YMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLI------- 309
              Y+    +D+A  +F+D+       WN MI G+  +GRF+ +LEL   M+        
Sbjct: 518 AIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDN 577

Query: 310 GDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIES 369
             V+PN  +++S L A   L  L KG W HSY+++ GF  D ++ T ++ MYSKCGS++ 
Sbjct: 578 SGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDL 637

Query: 370 ALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSH 429
           A  +F   + K +  W+AMI   G+HG   +A+DLF++M + G++P+ +TF  VL+ACSH
Sbjct: 638 ARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSH 697

Query: 430 AGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWM 489
           +GL+ +G+ YF +M  ++ I   + +Y C+VD+L R G L EA   IE+MP+ P+  IW 
Sbjct: 698 SGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWG 757

Query: 490 SLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRG 549
           SLL   R H N D+ E  A++L  + P   G +V+LSNIYAA  +W++V +VR+MM +RG
Sbjct: 758 SLLGACRIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRG 817

Query: 550 FRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIE 609
             K  G S +E+   +H+F VGD+SHPQ +++++KL E+   +K  G+VP T  VL  IE
Sbjct: 818 ANKIQGFSLVEYDNQVHKFGVGDRSHPQWEKLYAKLEELAAPMKHLGYVPLTDFVLHDIE 877

Query: 610 DQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIV 669
           ++  KEA L  HSERLAIAFGLIN    + +RI KNLR+C DCH+  KL+S I NR I+V
Sbjct: 878 EEA-KEAALSYHSERLAIAFGLINTSPGTTLRITKNLRICGDCHNAIKLISKIVNRVILV 936

Query: 670 RDNSRFHHFKNGSCSCKDFW 689
           RD  RFH F++G CSC D+W
Sbjct: 937 RDMHRFHRFEDGVCSCGDYW 956



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 121/431 (28%), Positives = 218/431 (50%), Gaps = 51/431 (11%)

Query: 26  NILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHP 85
           ++ +  +  +   QLH+   KT +++ +  +++L SLY      +L  AR +FD    HP
Sbjct: 9   DLFQACNNGRSVSQLHSQVFKTGILHDTFFATKLNSLYAK--CASLQAARKVFDET-PHP 65

Query: 86  SLVLYNLLIKCYVFNQRSHEALTLF----CDLLDRFLLPDNFTLPCVIKGAARLGAIKEG 141
           ++ L+N  ++ Y   ++  E L LF    C   +    PDNFT+P  +K  A L  ++ G
Sbjct: 66  NVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEA---PDNFTIPIALKACAGLRMLELG 122

Query: 142 KQIHGLVFKLG-FGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVK 200
           K IHG   K    G D FV S+LV +Y+K G++    +VF+     D V W  ++ GY +
Sbjct: 123 KVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQ 182

Query: 201 KGEVEVAMKLFDEMP-----DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNA 255
             + E A+ LF +M      D DL     L++ ++K G  +IA  +F +MP ++++SW+ 
Sbjct: 183 NNDPEEALALFSQMVMMDCFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWST 242

Query: 256 MINGYMKAGDVDSACELFDDM-----------------------------------EIRD 280
           MI  Y      + A  LF +M                                     +D
Sbjct: 243 MIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKD 302

Query: 281 LITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHS 340
           +++W ++++GY  NG   +++ +   ML   + P+   +V  L+A + L +  +   +H 
Sbjct: 303 VVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHG 362

Query: 341 YIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQ 400
           Y+V++GF  +  +G  LI++YSKCGS+  A+ +F+ +  + V  W++MI   G+HG   +
Sbjct: 363 YVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGE 422

Query: 401 ALDLFNKMCRM 411
           AL++F++M ++
Sbjct: 423 ALEIFDQMIQV 433



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 130/259 (50%), Gaps = 20/259 (7%)

Query: 49  LIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALT 108
           L Y S I ++   +YV    N +  A  +F+ I  +P   L+N++I+ +  + R   +L 
Sbjct: 507 LQYDSRILTKFAIMYVS--FNRIDAASIVFEDI-PNPCSFLWNVMIRGFATDGRFLSSLE 563

Query: 109 LFCDLLDRFLLPDN-------FTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLS 161
           L+  ++++ L PDN        ++  V+     LGA+++G+  H  V + GF FD  V +
Sbjct: 564 LYSKMMEKGLKPDNSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVAT 623

Query: 162 SLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL-- 219
           +++ MY+K G +DL R +FD    KDLV W+ +I  Y   G    A+ LFD+M    +  
Sbjct: 624 AIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRP 683

Query: 220 --FSWTCLVDGFSKCGKVEIAREIFYRMPN-----RNLVSWNAMINGYMKAGDVDSACEL 272
              ++TC++   S  G +E  +  F  M       R L ++  M++   +AG +  A +L
Sbjct: 684 SHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDL 743

Query: 273 FDDMEIR-DLITWNSMIAG 290
            ++M +  D   W S++  
Sbjct: 744 IENMPVEPDASIWGSLLGA 762



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 137/308 (44%), Gaps = 48/308 (15%)

Query: 143 QIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKG 202
           Q+H  VFK G   D F  + L S+YAK   +   R+VFD     ++  WN  +  Y ++ 
Sbjct: 22  QLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREK 81

Query: 203 EVEVAMKLF-------DEMPDRDLFSWTCLVDGFSKCGKVEIAREI--FYRMPNR---NL 250
           + E  ++LF        E PD   F+    +   +    +E+ + I  F +  +    ++
Sbjct: 82  QWEETLRLFHLMICTAGEAPDN--FTIPIALKACAGLRMLELGKVIHGFAKKNDEIGSDM 139

Query: 251 VSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIG 310
              +A++  Y K G +  A ++F++ +  D + W SM+ GY+ N    EAL L   M++ 
Sbjct: 140 FVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMM 199

Query: 311 DVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESA 370
           D    D  LV++L                                  + +Y+K G  + A
Sbjct: 200 DCFDGDLPLVNSL----------------------------------LNLYAKTGCEKIA 225

Query: 371 LTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHA 430
             +F  + +K V  W+ MI     +  A +AL+LF++M     +P ++T +  L AC+ +
Sbjct: 226 ANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVS 285

Query: 431 GLVNDGRR 438
             + +G++
Sbjct: 286 RNLEEGKK 293


>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 649

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 223/588 (37%), Positives = 343/588 (58%), Gaps = 23/588 (3%)

Query: 120 PDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRV 179
           P   T   +I  AAR  ++ +   +H L+   GF  D F+ + L++M+++   +D  R+V
Sbjct: 67  PTQQTCELLILSAARRNSLSDALDVHQLLVDGGFDQDPFLATKLINMFSELDTVDNARKV 126

Query: 180 FDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP----DRDLFSWT----------CL 225
           FD    + +  WN L       G     ++L+  M       D F++T          CL
Sbjct: 127 FDKTRKRTIYVWNALFRALALAGRGNDVLELYPRMNMMGVSSDRFTYTYLLKACVASECL 186

Query: 226 VDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWN 285
           V  F + GK EI   I       ++     +++ Y + G V  A  +FD+M ++++++W+
Sbjct: 187 V-SFLQKGK-EIHAHILRHGYGAHVHVMTTLMDMYARFGCVSYASAVFDEMPVKNVVSWS 244

Query: 286 SMIAGYELNGRFMEALELLETMLIG--DVLPNDATLVSALSAVAGLAVLNKGRWMHSYIV 343
           +MIA Y  NG+  EALEL   M++   D +PN  T+VS L A A  A L +G+ +H+YI+
Sbjct: 245 AMIACYAKNGKPYEALELFREMMLNTHDSVPNSVTMVSVLQACAAFAALEQGKLIHAYIL 304

Query: 344 KNGFVVDGVLGTL--LIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQA 401
           + G  +D +L  +  LI MY++CG +ES   +F  + KK V  W ++I   G+HG   +A
Sbjct: 305 RRG--LDSILPVISALITMYARCGKLESGQLIFDRMHKKDVVLWNSLISSYGLHGYGRKA 362

Query: 402 LDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVD 461
           + +F +M   G  P+ I+FI VL ACSH GLV +G++ F  M+ ++GI+P++EHY C+VD
Sbjct: 363 IKIFEEMIDHGFSPSHISFISVLGACSHTGLVEEGKKLFESMVKEHGIQPSVEHYACMVD 422

Query: 462 ILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGC 521
           +L R   L+EA   IE + + P   +W SLL   R H + ++ E A+  L K+ P   G 
Sbjct: 423 LLGRANRLDEAAKIIEDLRIEPGPKVWGSLLGACRIHCHVELAERASKRLFKLEPTNAGN 482

Query: 522 YVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEI 581
           YV+L++IYA A  WD+V  V++++  R  +K PG S IE R  ++ F   D+ +PQ +++
Sbjct: 483 YVLLADIYAEAEMWDEVKRVKKLLDSRELQKVPGRSWIEVRRKIYSFTSVDEFNPQGEQL 542

Query: 582 HSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIR 641
           H+ L  + N++K  G+ P T  VL  + DQ+EKE  +  HSE+LA+AFGLIN      IR
Sbjct: 543 HALLVNLSNEMKQRGYTPQTKLVLYDL-DQEEKERIVLGHSEKLAVAFGLINTSKGDTIR 601

Query: 642 IVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           I KNLR+C DCHSVTK +S   +REI+VRD +RFHHFK+G CSC D+W
Sbjct: 602 ITKNLRLCEDCHSVTKFISKFADREIMVRDLNRFHHFKDGVCSCGDYW 649



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 139/268 (51%), Gaps = 15/268 (5%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           ++ +++HA  ++     H  + + L+ +Y       + YA ++FD  +   ++V ++ +I
Sbjct: 191 QKGKEIHAHILRHGYGAHVHVMTTLMDMYA--RFGCVSYASAVFDE-MPVKNVVSWSAMI 247

Query: 95  KCYVFNQRSHEALTLFCDLL--DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLG 152
            CY  N + +EAL LF +++      +P++ T+  V++  A   A+++GK IH  + + G
Sbjct: 248 ACYAKNGKPYEALELFREMMLNTHDSVPNSVTMVSVLQACAAFAALEQGKLIHAYILRRG 307

Query: 153 FGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFD 212
                 V+S+L++MYA+ G+++ G+ +FD M  KD+V WN LI  Y   G    A+K+F+
Sbjct: 308 LDSILPVISALITMYARCGKLESGQLIFDRMHKKDVVLWNSLISSYGLHGYGRKAIKIFE 367

Query: 213 EMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS-----WNAMINGYMKA 263
           EM D        S+  ++   S  G VE  +++F  M   + +      +  M++   +A
Sbjct: 368 EMIDHGFSPSHISFISVLGACSHTGLVEEGKKLFESMVKEHGIQPSVEHYACMVDLLGRA 427

Query: 264 GDVDSACELFDDMEIRD-LITWNSMIAG 290
             +D A ++ +D+ I      W S++  
Sbjct: 428 NRLDEAAKIIEDLRIEPGPKVWGSLLGA 455


>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 210/473 (44%), Positives = 305/473 (64%), Gaps = 2/473 (0%)

Query: 218 DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDME 277
           D++    LV  ++ CG +  A  IF +MP R++VSW +M+ GY K G V+ A E+FD+M 
Sbjct: 153 DVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTSMVAGYCKCGMVEDAREMFDEMP 212

Query: 278 IRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRW 337
            R+L TW+ MI GY  N  F +A++L E M    V+ N+  +VS +S+ A L  L  G  
Sbjct: 213 HRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANETVMVSVISSCAHLGALEFGER 272

Query: 338 MHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGM 397
            H Y+VK+   V+ +LGT L+ MY +CG IE A+ VF  +  K    W+++I GL +HG 
Sbjct: 273 AHEYVVKSHMTVNLILGTALVDMYWRCGEIEKAIRVFEELPDKDSLSWSSIIKGLAVHGH 332

Query: 398 ATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYG 457
           A +A+  F++M R+G  P  IT   VL+ACSH GLV+ G   +  M  DYGIEP +EHYG
Sbjct: 333 AHKAIHYFSQMVRLGFSPRDITLTAVLSACSHGGLVDKGLEIYENMKRDYGIEPRLEHYG 392

Query: 458 CLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPD 517
           C+VD+L R G L EA++ I  MP++PN  I  +LL   + + N ++ E   N LI+V P+
Sbjct: 393 CIVDMLGRAGKLAEAENFILKMPVKPNAPILGALLGACKIYKNTEVAERVGNMLIEVKPE 452

Query: 518 TIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVG-DKSHP 576
             G YV+LSNIYA AGQW+K+  +R++MK++  +K PG S IE  G +++F +G D+ HP
Sbjct: 453 HSGYYVLLSNIYACAGQWEKLESLRDIMKEKLVKKPPGWSLIEIDGKINKFSMGDDQKHP 512

Query: 577 QTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKS 636
           +  +I     E+  K++  G+  +T      + D++EKE  +  HSE+LAIA+G++  K+
Sbjct: 513 EMGKIKRLWEEILGKIRLIGYKGNTGDAFFDV-DEEEKETAIHMHSEKLAIAYGMMKTKT 571

Query: 637 RSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            + IRIVKNLRVC DCH+ TKL+S +Y RE IVRD +RFHHF+NG CSC+D+W
Sbjct: 572 GTTIRIVKNLRVCEDCHTATKLISEVYGREFIVRDRNRFHHFRNGLCSCRDYW 624



 Score =  175 bits (443), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 124/480 (25%), Positives = 222/480 (46%), Gaps = 85/480 (17%)

Query: 27  ILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYV-------DPHINNLHYARSIFD 79
           +L+  S+  + + +H   ++T+LI    ++SRLL+L +           N L YA  IF 
Sbjct: 18  LLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALALCVDDSTFHKPTNLLGYAYGIFS 77

Query: 80  RILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIK 139
           +I Q+P+L ++N+LI+C+       +A   +  +L   + PDN T P +IK +  +  + 
Sbjct: 78  QI-QNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASTEMECVV 136

Query: 140 EGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYV 199
            G+Q H  + + GF  D +V +SLV MYA  G I    R+F  M  +D+VSW  ++ GY 
Sbjct: 137 VGEQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTSMVAGYC 196

Query: 200 KKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR----------- 248
           K G VE A ++FDEMP R+LF+W+ +++G++K    E A ++F  M              
Sbjct: 197 KCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANETVMVS 256

Query: 249 ----------------------------NLVSWNAMINGYMKAGDVDSACELFDDMEIRD 280
                                       NL+   A+++ Y + G+++ A  +F+++  +D
Sbjct: 257 VISSCAHLGALEFGERAHEYVVKSHMTVNLILGTALVDMYWRCGEIEKAIRVFEELPDKD 316

Query: 281 LITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHS 340
            ++W+S+I G  ++G   +A+     M+     P D TL + LSA +   +++KG  ++ 
Sbjct: 317 SLSWSSIIKGLAVHGHAHKAIHYFSQMVRLGFSPRDITLTAVLSACSHGGLVDKGLEIYE 376

Query: 341 YIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQ 400
            + ++  +                              + ++ H+  ++  LG  G   +
Sbjct: 377 NMKRDYGI------------------------------EPRLEHYGCIVDMLGRAGKLAE 406

Query: 401 ALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLV 460
           A    N + +M +KP A     +L AC          R  NM+I    ++P  EH G  V
Sbjct: 407 AE---NFILKMPVKPNAPILGALLGACKIYKNTEVAERVGNMLIE---VKP--EHSGYYV 458


>gi|4966374|gb|AAD34705.1|AC006341_33 >F3O9.28 [Arabidopsis thaliana]
          Length = 1027

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 238/669 (35%), Positives = 375/669 (56%), Gaps = 21/669 (3%)

Query: 34   HKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRIL--QHPS--LVL 89
             K  + +H L VK        + + LL +Y           RS+   ++  Q P+  L+ 
Sbjct: 367  QKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGA-------GRSVEANLVFKQMPTKDLIS 419

Query: 90   YNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVF 149
            +N L+  +V + RS +AL L C ++      +  T    +         ++G+ +HGLV 
Sbjct: 420  WNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVV 479

Query: 150  KLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMK 209
              G  +++ + ++LVSMY K GE+   RRV   M  +D+V+WN LI GY +  + + A+ 
Sbjct: 480  VSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALA 539

Query: 210  LFDEMPDRDLFS-WTCLVDGFSKC----GKVEIAREIFYRMPNRNLVS----WNAMINGY 260
             F  M    + S +  +V   S C      +E  + +   + +    S     N++I  Y
Sbjct: 540  AFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMY 599

Query: 261  MKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLV 320
             K GD+ S+ +LF+ ++ R++ITWN+M+A    +G   E L+L+  M    V  +  +  
Sbjct: 600  AKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFS 659

Query: 321  SALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKK 380
              LSA A LAVL +G+ +H   VK GF  D  +      MYSKCG I   + +      +
Sbjct: 660  EGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNR 719

Query: 381  KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYF 440
             +  W  +I  LG HG   +    F++M  MG+KP  +TF+ +L ACSH GLV+ G  Y+
Sbjct: 720  SLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYY 779

Query: 441  NMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGN 500
            +M+  D+G+EP IEH  C++D+L R+G L EA++ I  MPM+PN ++W SLL+  + HGN
Sbjct: 780  DMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGN 839

Query: 501  KDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIE 560
             D G  AA NL K+ P+    YV+ SN++A  G+W+ V  VR+ M  +  +K    S ++
Sbjct: 840  LDRGRKAAENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVK 899

Query: 561  HRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELEN 620
             +  +  F +GD++HPQT EI++KL +++  +K +G+V DT+Q L    D+++KE  L N
Sbjct: 900  LKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIKESGYVADTSQALQDT-DEEQKEHNLWN 958

Query: 621  HSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKN 680
            HSERLA+A+ L++    S +RI KNLR+C+DCHSV K +S +  R I++RD  RFHHF+ 
Sbjct: 959  HSERLALAYALMSTPEGSTVRIFKNLRICSDCHSVYKFVSRVIGRRIVLRDQYRFHHFER 1018

Query: 681  GSCSCKDFW 689
            G CSCKD+W
Sbjct: 1019 GLCSCKDYW 1027



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 143/573 (24%), Positives = 241/573 (42%), Gaps = 98/573 (17%)

Query: 24  HWNI-------LKFSSTHKET--QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYA 74
           HWN        + FS    ET  + +HAL VK  +      ++ L+++Y       +  A
Sbjct: 69  HWNPEISCFDQIGFSQITIETTGRAVHALCVKGLVRLSVLHTNTLINMYTK--FGRVKPA 126

Query: 75  RSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAAR 134
           R +FD I+   + V +N ++   V      E +  F  + D  + P +F +  ++    R
Sbjct: 127 RHLFD-IMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGR 185

Query: 135 LGAI-KEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
            G++ +EG Q+HG V K G   D +V ++++ +Y  +G +   R+VF+ M D+++VSW  
Sbjct: 186 SGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTS 245

Query: 194 LIDGYVKKGE---------------------------------------------VEVAM 208
           L+ GY  KGE                                             V+ A 
Sbjct: 246 LMVGYSDKGEPEEVIDIYKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYAN 305

Query: 209 KLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMP------NRNLVS---------- 252
            +FD+M +RD  SW  +   +++ G +E +  IF  M       N   VS          
Sbjct: 306 YIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVD 365

Query: 253 ---WNAMING--------------------YMKAGDVDSACELFDDMEIRDLITWNSMIA 289
              W   I+G                    Y  AG    A  +F  M  +DLI+WNS++A
Sbjct: 366 HQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMA 425

Query: 290 GYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVV 349
            +  +GR ++AL LL +M+      N  T  SAL+A        KGR +H  +V +G   
Sbjct: 426 SFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFY 485

Query: 350 DGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMC 409
           + ++G  L+ MY K G +  +  V   + ++ V  W A+I G        +AL  F  M 
Sbjct: 486 NQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMR 545

Query: 410 RMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYL 469
             G+    IT + VL+AC   G + +  +  +  I   G E        L+ +  + G L
Sbjct: 546 VEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDL 605

Query: 470 EEAKSTIESMPMRPNFVIWMSLLSGARNHGNKD 502
             ++     +  R N + W ++L+   +HG+ +
Sbjct: 606 SSSQDLFNGLDNR-NIITWNAMLAANAHHGHGE 637



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 138/515 (26%), Positives = 234/515 (45%), Gaps = 57/515 (11%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +Q+    VK+ L     + + L+S+     + N+ YA  IFD++ +  + + +N +   Y
Sbjct: 270 RQIIGQVVKSGLESKLAVENSLISML--GSMGNVDYANYIFDQMSERDT-ISWNSIAAAY 326

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDN-FTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFD 156
             N    E+  +F  L+ RF    N  T+  ++     +   K G+ IHGLV K+GF   
Sbjct: 327 AQNGHIEESFRIF-SLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSV 385

Query: 157 KFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM-- 214
             V ++L+ MYA  G       VF  M  KDL+SWN L+  +V  G    A+ L   M  
Sbjct: 386 VCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMIS 445

Query: 215 --PDRDLFSWT-----CLVDGFSKCGKV----EIAREIFYRMPNRNLVSWNAMINGYMKA 263
                +  ++T     C    F + G++     +   +FY     N +  NA+++ Y K 
Sbjct: 446 SGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFY-----NQIIGNALVSMYGKI 500

Query: 264 GDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSAL 323
           G++  +  +   M  RD++ WN++I GY  +    +AL   +TM +  V  N  T+VS L
Sbjct: 501 GEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVL 560

Query: 324 SA-VAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKV 382
           SA +    +L +G+ +H+YIV  GF  D  +   LI MY+KCG + S+  +F  +  + +
Sbjct: 561 SACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNI 620

Query: 383 GHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRY--- 439
             W AM+     HG   + L L +KM   G+     +F   L+A +   ++ +G++    
Sbjct: 621 ITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGL 680

Query: 440 ------------FNMMINDYG-----------IEPTIEH----YGCLVDILCRTGYLEEA 472
                       FN   + Y            + P++      +  L+  L R GY EE 
Sbjct: 681 AVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEV 740

Query: 473 KSTIE---SMPMRPNFVIWMSLLSGARNHGNKDIG 504
            +T      M ++P  V ++SLL+   + G  D G
Sbjct: 741 CATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKG 775


>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 620

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 234/616 (37%), Positives = 343/616 (55%), Gaps = 29/616 (4%)

Query: 90  YNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVF 149
           +N+ ++   +     E+++L+  +L     PD F+ P ++K  A L     G+Q+H  V 
Sbjct: 18  WNVRLRELAYQSLFTESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVI 77

Query: 150 KLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDL--VSWNCLIDGYVKKGEVEVA 207
           + G   + FVL++L+SMY K G ++  R+VF+         V +N LI GY    +V  A
Sbjct: 78  RGGCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKVSDA 137

Query: 208 MKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNL-------------VSWN 254
             +F  M +  +      VD  +  G V +     Y    R+L                N
Sbjct: 138 AFMFRRMKETGVS-----VDSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTYSEVAVLN 192

Query: 255 AMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLP 314
           + I  YMK G V+S   LFD+M ++ LITWN++I+GY  NG   + LEL E M    V P
Sbjct: 193 SFITMYMKCGSVESGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELFEQMKSSGVCP 252

Query: 315 NDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVF 374
           +  TLVS LS+ A L     G+ +   +  NGF  +  L   LI MY++CG++  A  VF
Sbjct: 253 DPFTLVSVLSSCAHLGAKKIGQEVGELVEANGFAPNVFLSNALISMYARCGNLAKARAVF 312

Query: 375 RAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVN 434
             +  K +  WTAMI   GMHGM    L LF+ M + G++P    F+ VL+ACSH+GL +
Sbjct: 313 DIMPVKSLVSWTAMIGCYGMHGMGETGLTLFDDMIKRGIRPDGAVFVMVLSACSHSGLTD 372

Query: 435 DGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG 494
            G   F  M  +Y +EP  EHY CLVD+L R G L+EA   I+SMP+ P+  +W +LL  
Sbjct: 373 KGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIDSMPVEPDGAVWGALLGA 432

Query: 495 ARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDP 554
            + H N D+ E A   +I+  P  IG YV++SNIY+ +   + +  +R MM++R FRK P
Sbjct: 433 CKIHKNVDMAELAFAKVIEFEPMNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKP 492

Query: 555 GSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNK-LKAAGHVPDTTQVLLCIEDQKE 613
           G S +EH+G +H F+ GD+SH QT+E+H  L E+    ++ AG++          +  +E
Sbjct: 493 GYSYVEHKGKVHLFLAGDRSHEQTEEVHRMLDELETSVMELAGNMD--------CDRGEE 544

Query: 614 KEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNS 673
             +    HSERLAIAFG++N    + I ++KNLRVC DCH   KL+S I +R  +VRD S
Sbjct: 545 VSSTTREHSERLAIAFGILNSIPGTEILVIKNLRVCEDCHVFIKLVSKIVDRRFVVRDAS 604

Query: 674 RFHHFKNGSCSCKDFW 689
           RFH+FK+G CSCKD+W
Sbjct: 605 RFHYFKDGVCSCKDYW 620



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 127/269 (47%), Gaps = 17/269 (6%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           + LH   VK        + +  +++Y+     ++   R +FD  +    L+ +N +I  Y
Sbjct: 173 RSLHGECVKGGTYSEVAVLNSFITMYMK--CGSVESGRRLFDE-MPVKGLITWNAVISGY 229

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
             N  +++ L LF  +    + PD FTL  V+   A LGA K G+++  LV   GF  + 
Sbjct: 230 SQNGLAYDVLELFEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGQEVGELVEANGFAPNV 289

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM--- 214
           F+ ++L+SMYA+ G +   R VFD M  K LVSW  +I  Y   G  E  + LFD+M   
Sbjct: 290 FLSNALISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGETGLTLFDDMIKR 349

Query: 215 ---PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS-----WNAMINGYMKAGDV 266
              PD  +F    ++   S  G  +   E+F  M     +      ++ +++   +AG +
Sbjct: 350 GIRPDGAVF--VMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRL 407

Query: 267 DSACELFDDMEIR-DLITWNSMIAGYELN 294
           D A E  D M +  D   W +++   +++
Sbjct: 408 DEAMEFIDSMPVEPDGAVWGALLGACKIH 436



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/272 (23%), Positives = 119/272 (43%), Gaps = 7/272 (2%)

Query: 283 TWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYI 342
           +WN  +        F E++ L  +ML     P+  +    L + A L++   G+ +H ++
Sbjct: 17  SWNVRLRELAYQSLFTESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHV 76

Query: 343 VKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRA-ISKKKVG-HWTAMIVGLGMHGMATQ 400
           ++ G   +  + T LI MY KCG +E A  VF       ++G  + A+I G   +   + 
Sbjct: 77  IRGGCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKVSD 136

Query: 401 ALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLV 460
           A  +F +M   G+   ++T +G++  C+    +  GR      +   G    +      +
Sbjct: 137 AAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKG-GTYSEVAVLNSFI 195

Query: 461 DILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG-NKDIGE-YAANNLIKVAPDT 518
            +  + G +E  +   + MP++   + W +++SG   +G   D+ E +       V PD 
Sbjct: 196 TMYMKCGSVESGRRLFDEMPVK-GLITWNAVISGYSQNGLAYDVLELFEQMKSSGVCPDP 254

Query: 519 IGCYVVLSNIYAAAGQWDKVSEVREMMKKRGF 550
                VLS+  A  G      EV E+++  GF
Sbjct: 255 FTLVSVLSSC-AHLGAKKIGQEVGELVEANGF 285


>gi|356528130|ref|XP_003532658.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Glycine max]
          Length = 674

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 225/601 (37%), Positives = 353/601 (58%), Gaps = 40/601 (6%)

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD 187
           +++    L ++  GKQ+H L+F  G   DKF+ + L+++Y+KFGE+     +FD M  ++
Sbjct: 75  LLQACIPLKSVSLGKQLHSLIFTSGCSSDKFISNHLLNLYSKFGELQAAVALFDRMPRRN 134

Query: 188 LVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM-- 245
           ++S N +I  Y+  G +E A  LFDEMPDR++ +W  +V G +K    E A  +F RM  
Sbjct: 135 IMSCNIMIKAYLGMGNLESAKNLFDEMPDRNVATWNAMVTGLTKFEMNEEALLLFSRMNE 194

Query: 246 ----PNR---------------------------------NLVSWNAMINGYMKAGDVDS 268
               P+                                  NLV   ++ + YMKAG +  
Sbjct: 195 LSFMPDEYSLGSVLRGCAHLGALLAGQQVHAYVMKCGFECNLVVGCSLAHMYMKAGSMHD 254

Query: 269 ACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAG 328
              + + M    L+ WN++++G    G F   L+    M +    P+  T VS +S+ + 
Sbjct: 255 GERVINWMPDCSLVAWNTLMSGKAQKGYFEGVLDQYCMMKMAGFRPDKITFVSVISSCSE 314

Query: 329 LAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAM 388
           LA+L +G+ +H+  VK G   +  + + L+ MYS+CG ++ ++  F    ++ V  W++M
Sbjct: 315 LAILCQGKQIHAEAVKAGASSEVSVVSSLVSMYSRCGCLQDSIKTFLECKERDVVLWSSM 374

Query: 389 IVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYG 448
           I   G HG   +A+ LFN+M +  +    ITF+ +L ACSH GL + G   F+MM+  YG
Sbjct: 375 IAAYGFHGQGEEAIKLFNEMEQENLPGNEITFLSLLYACSHCGLKDKGLGLFDMMVKKYG 434

Query: 449 IEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAA 508
           ++  ++HY CLVD+L R+G LEEA++ I SMP++ + +IW +LLS  + H N +I    A
Sbjct: 435 LKARLQHYTCLVDLLGRSGCLEEAEAMIRSMPVKADAIIWKTLLSACKIHKNAEIARRVA 494

Query: 509 NNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEF 568
           + ++++ P     YV+L+NIY++A +W  VSEVR  MK +  +K+PG S +E +  +H+F
Sbjct: 495 DEVLRIDPQDSASYVLLANIYSSANRWQNVSEVRRAMKDKMVKKEPGISWVEVKNQVHQF 554

Query: 569 VVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIA 628
            +GD+ HP+  EI+  L E+ +++K  G+VPDT+ VL  + D +EKE  L +HSE+LAIA
Sbjct: 555 HMGDECHPKHVEINQYLEELTSEIKRQGYVPDTSSVLHDM-DNEEKEQILRHHSEKLAIA 613

Query: 629 FGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDF 688
           F L+N     PIR++KNLRVC+DCH   K +S I   EIIVRD+SRFHHFKNG+CSC D+
Sbjct: 614 FALMNTPEGVPIRVMKNLRVCSDCHVAIKYISEIKKLEIIVRDSSRFHHFKNGTCSCGDY 673

Query: 689 W 689
           W
Sbjct: 674 W 674



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 176/365 (48%), Gaps = 21/365 (5%)

Query: 68  INNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPC 127
           + NL  A+++FD  +   ++  +N ++      + + EAL LF  + +   +PD ++L  
Sbjct: 148 MGNLESAKNLFDE-MPDRNVATWNAMVTGLTKFEMNEEALLLFSRMNELSFMPDEYSLGS 206

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD 187
           V++G A LGA+  G+Q+H  V K GF  +  V  SL  MY K G +  G RV + M D  
Sbjct: 207 VLRGCAHLGALLAGQQVHAYVMKCGFECNLVVGCSLAHMYMKAGSMHDGERVINWMPDCS 266

Query: 188 LVSWNCLIDGYVKKGEVE------VAMKLFDEMPDRDLFSWTCLVDGFSKCGKV------ 235
           LV+WN L+ G  +KG  E        MK+    PD+  F     V   S C ++      
Sbjct: 267 LVAWNTLMSGKAQKGYFEGVLDQYCMMKMAGFRPDKITF-----VSVISSCSELAILCQG 321

Query: 236 -EIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELN 294
            +I  E      +  +   +++++ Y + G +  + + F + + RD++ W+SMIA Y  +
Sbjct: 322 KQIHAEAVKAGASSEVSVVSSLVSMYSRCGCLQDSIKTFLECKERDVVLWSSMIAAYGFH 381

Query: 295 GRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKN-GFVVDGVL 353
           G+  EA++L   M   ++  N+ T +S L A +   + +KG  +   +VK  G       
Sbjct: 382 GQGEEAIKLFNEMEQENLPGNEITFLSLLYACSHCGLKDKGLGLFDMMVKKYGLKARLQH 441

Query: 354 GTLLIQMYSKCGSIESALTVFRAIS-KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG 412
            T L+ +  + G +E A  + R++  K     W  ++    +H  A  A  + +++ R+ 
Sbjct: 442 YTCLVDLLGRSGCLEEAEAMIRSMPVKADAIIWKTLLSACKIHKNAEIARRVADEVLRID 501

Query: 413 MKPTA 417
            + +A
Sbjct: 502 PQDSA 506


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 239/733 (32%), Positives = 382/733 (52%), Gaps = 114/733 (15%)

Query: 69  NNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCV 128
           N +  AR +FD+I + PS+VL+N++I+ Y ++    +++ L+  +L   + P NFT P +
Sbjct: 55  NEIQLARHVFDQIPK-PSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFL 113

Query: 129 IKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAM--DDK 186
           +K  + L A++ G+ IH     LG   D +V ++L+ MYAK G +   + +F+++   D+
Sbjct: 114 LKACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDR 173

Query: 187 DLVSWNCLIDGYV----------------KKGEVEVAMKLFDEMPD-------------- 216
           D+V+WN +I  +                 + G    +  L   +P               
Sbjct: 174 DIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIH 233

Query: 217 ----RDLFS-----WTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVD 267
               R+ F       T L+D ++KC  +  AR+IF  +  +N V W+AMI GY+    + 
Sbjct: 234 AYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSIS 293

Query: 268 SACELFDDM---------------------EIRDL-------------------ITWNSM 287
            A  L+DDM                     ++ DL                      NS+
Sbjct: 294 DALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVGNSL 353

Query: 288 IAGYELNGRFMEALELLETMLIGD-------------------------------VLPND 316
           I+ Y   G    A+  L+ M+  D                               + P  
Sbjct: 354 ISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYL 413

Query: 317 ATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRA 376
            T+++ L A + LA L  G   H Y V  GF  D  +   +I MYSKCG I  +  +F  
Sbjct: 414 ETMIALLPACSHLAALQHGTCCHGYTVVRGFTNDTSICNAIIDMYSKCGKITISREIFDR 473

Query: 377 ISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDG 436
           +  + +  W  MI+G G+HG+  +AL LF ++  +G+KP  +T I VL+ACSH+GLV +G
Sbjct: 474 MQNRDIISWNTMIIGYGIHGLCVEALSLFQELQALGLKPDDVTLIAVLSACSHSGLVTEG 533

Query: 437 RRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGAR 496
           + +F+ M  ++ I+P + HY C+VD+L R G L+EA + I+ MP  PN  IW +LL+  R
Sbjct: 534 KYWFSSMSQNFNIKPRMAHYICMVDLLARAGNLDEAYTFIQRMPFVPNVRIWGALLAACR 593

Query: 497 NHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGS 556
            H N ++GE  +  +  + P+  G +V++SNIY++ G+WD  + +R + +  G++K PG 
Sbjct: 594 THKNIEMGEQVSKKIQLLGPEGTGNFVLMSNIYSSVGRWDDAAYIRSIQRHHGYKKSPGC 653

Query: 557 SSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEA 616
           S +E  GV+H F+ G +SHPQ+  I+ KL E+  ++K  G+  D++ VL  +E++ EKE 
Sbjct: 654 SWVEISGVIHVFIGGHQSHPQSASINKKLQELLVQMKKLGYRADSSFVLHDVEEE-EKEQ 712

Query: 617 ELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFH 676
            L  HSE++AIAFG++N    S I + KNLR+C DCHS  K ++ +  REI VRD SRFH
Sbjct: 713 ILLYHSEKVAIAFGILNTSPSSRILVTKNLRICVDCHSAIKFITLLTEREITVRDASRFH 772

Query: 677 HFKNGSCSCKDFW 689
           HFK+G C+C+DFW
Sbjct: 773 HFKDGICNCQDFW 785



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 113/444 (25%), Positives = 200/444 (45%), Gaps = 79/444 (17%)

Query: 36  ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIK 95
           + + +HA  ++     +  + + LL +Y   H+  L YAR IF+ +    + V ++ +I 
Sbjct: 228 QGKAIHAYYIRNFFFDNVVLQTALLDMYAKCHL--LFYARKIFNTV-NKKNDVCWSAMIG 284

Query: 96  CYVFNQRSHEALTLFCDLLDRF-LLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
            YV +    +AL L+ D+L  + L P   TL  +++  A+L  +K GK++H  + K G  
Sbjct: 285 GYVLHDSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMD 344

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
            D  V +SL+SMYAK G +D      D M  KD VS++ +I G V+ G  E A+ +F +M
Sbjct: 345 LDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQM 404

Query: 215 PDRDLFSW--------------------TC-------------------LVDGFSKCGKV 235
               +  +                    TC                   ++D +SKCGK+
Sbjct: 405 QSSGIAPYLETMIALLPACSHLAALQHGTCCHGYTVVRGFTNDTSICNAIIDMYSKCGKI 464

Query: 236 EIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNG 295
            I+REIF RM NR+++SWN MI                                GY ++G
Sbjct: 465 TISREIFDRMQNRDIISWNTMI-------------------------------IGYGIHG 493

Query: 296 RFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLG- 354
             +EAL L + +    + P+D TL++ LSA +   ++ +G++  S + +N F +   +  
Sbjct: 494 LCVEALSLFQELQALGLKPDDVTLIAVLSACSHSGLVTEGKYWFSSMSQN-FNIKPRMAH 552

Query: 355 -TLLIQMYSKCGSIESALTVFRAIS-KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG 412
              ++ + ++ G+++ A T  + +     V  W A++     H        +  K+  +G
Sbjct: 553 YICMVDLLARAGNLDEAYTFIQRMPFVPNVRIWGALLAACRTHKNIEMGEQVSKKIQLLG 612

Query: 413 MKPTAITFIGVLNACSHAGLVNDG 436
            + T   F+ + N  S  G  +D 
Sbjct: 613 PEGTG-NFVLMSNIYSSVGRWDDA 635



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 123/266 (46%), Gaps = 13/266 (4%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           K  ++LH   +K+ +   + + + L+S+Y    I  +  A    D ++   + V Y+ +I
Sbjct: 329 KRGKKLHCHMIKSGMDLDTTVGNSLISMYAKCGI--MDNAVGFLDEMIAKDT-VSYSAII 385

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
              V N  + +AL +F  +    + P   T+  ++   + L A++ G   HG     GF 
Sbjct: 386 SGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHGTCCHGYTVVRGFT 445

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
            D  + ++++ MY+K G+I + R +FD M ++D++SWN +I GY   G    A+ LF E+
Sbjct: 446 NDTSICNAIIDMYSKCGKITISREIFDRMQNRDIISWNTMIIGYGIHGLCVEALSLFQEL 505

Query: 215 P----DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR-----NLVSWNAMINGYMKAGD 265
                  D  +   ++   S  G V   +  F  M         +  +  M++   +AG+
Sbjct: 506 QALGLKPDDVTLIAVLSACSHSGLVTEGKYWFSSMSQNFNIKPRMAHYICMVDLLARAGN 565

Query: 266 VDSACELFDDME-IRDLITWNSMIAG 290
           +D A      M  + ++  W +++A 
Sbjct: 566 LDEAYTFIQRMPFVPNVRIWGALLAA 591


>gi|356568696|ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 604

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 232/585 (39%), Positives = 348/585 (59%), Gaps = 14/585 (2%)

Query: 29  KFSSTHKETQ-----QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQ 83
           K    HK T      Q+HA  +K NL     ++ +L++ +      +L  A ++F+ +  
Sbjct: 24  KLCDLHKCTNLDSVNQIHAQVLKANLHQDLFVAPKLIAAF--SLCRHLASAVNVFNHV-P 80

Query: 84  HPSLVLYNLLIKCYVFNQRSHEALTL--FCDLLDRFLLPDNFTLPCVIKGAARLGAIKEG 141
           HP++ LYN +I+ +  N  SH +L    F  +    L PDNFT P ++K  +   ++   
Sbjct: 81  HPNVHLYNSIIRAHAHNS-SHRSLPFNAFFQMQKNGLFPDNFTYPFLLKACSGPSSLPLV 139

Query: 142 KQIHGLVFKLGFGFDKFVLSSLVSMYAKFGE--IDLGRRVFDAMDDKDLVSWNCLIDGYV 199
           + IH  V K+GF  D FV +SL+  Y++ G   +D    +F AM+++D+V+WN +I G V
Sbjct: 140 RMIHAHVEKIGFYGDIFVPNSLIDSYSRCGNAGLDGAMSLFLAMEERDVVTWNSMIGGLV 199

Query: 200 KKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMING 259
           + GE++ A KLFDEMPDRD+ SW  ++DG++K G+++ A E+F RMP RN+VSW+ M+ G
Sbjct: 200 RCGELQGACKLFDEMPDRDMVSWNTMLDGYAKAGEMDTAFELFERMPWRNIVSWSTMVCG 259

Query: 260 YMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATL 319
           Y K GD+D A  LFD   +++++ W ++IAGY   G   EA EL   M    + P+D  L
Sbjct: 260 YSKGGDMDMARMLFDRCPVKNVVLWTTIIAGYAEKGLAREATELYGKMEEAGMRPDDGFL 319

Query: 320 VSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAI-S 378
           +S L+A A   +L  G+ +H+ + +  F     +    I MY+KCG +++A  VF  + +
Sbjct: 320 LSILAACAESGMLGLGKRIHASMRRWRFRCGAKVLNAFIDMYAKCGCLDAAFDVFSGMMA 379

Query: 379 KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR 438
           KK V  W +MI G  MHG   +AL+LF+ M + G +P   TF+G+L AC+HAGLVN+GR+
Sbjct: 380 KKDVVSWNSMIQGFAMHGHGEKALELFSWMVQEGFEPDTYTFVGLLCACTHAGLVNEGRK 439

Query: 439 YFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNH 498
           YF  M   YGI P +EHYGC++D+L R G+L+EA   + SMPM PN +I  +LL+  R H
Sbjct: 440 YFYSMEKVYGIVPQVEHYGCMMDLLGRGGHLKEAFMLLRSMPMEPNAIILGTLLNACRMH 499

Query: 499 GNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSS 558
            + D+       L K+ P   G Y +LSNIYA AG W  V+ VR  MK  G  K  G+SS
Sbjct: 500 NDVDLARAVCEQLFKLEPSDPGNYSLLSNIYAQAGDWMNVANVRLQMKNTGGEKPSGASS 559

Query: 559 IEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQ 603
           IE    +HEF V D+SHP++D+I+  +  +   L+  G+VP   Q
Sbjct: 560 IEVEEEVHEFTVFDQSHPKSDDIYQMIDRLVQDLRQVGYVPMIHQ 604


>gi|225432810|ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Vitis vinifera]
          Length = 590

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 236/573 (41%), Positives = 326/573 (56%), Gaps = 33/573 (5%)

Query: 142 KQIHGLVFKLGFGFDKFVLSS--LVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYV 199
           KQ+H  +   G  F  + LS   L+S    F        +F+ + +  +  +N LI    
Sbjct: 26  KQVHAHMITTGLIFHTYPLSRILLISSTIVFTH---ALSIFNHIPNPTIFLYNTLISSLA 82

Query: 200 K-KGEVEVAMKLFDEMPDRDLFSWTCLVDGFS------KCGKVEIARE--------IFYR 244
             K    +A  L+     R L   T   +GF+       CG     R         + + 
Sbjct: 83  NIKPHTHIAFSLYS----RVLTHTTLKPNGFTFPSLFKACGSQPWLRHGRALHTHVLKFL 138

Query: 245 MPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRF------- 297
            P  +     A++N Y K G V +   LF+ +   DL +WNS+++ Y  N          
Sbjct: 139 EPTCDPFVQAALLNYYAKCGKVGACRYLFNQISKPDLASWNSILSAYVHNSGAICEDVSL 198

Query: 298 -MEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTL 356
            +E L L   M    +  N+ TLV+ +SA A L  L++G W H Y++K+   ++  +GT 
Sbjct: 199 SLEVLTLFIEMQKSLIKANEVTLVALISACAELGALSQGAWAHVYVLKHNLKLNHFVGTA 258

Query: 357 LIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT 416
           LI MYSKCG ++ A  +F  +  +    + AMI G  +HG   QALDLF KM   G+ P 
Sbjct: 259 LIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYGHQALDLFKKMTLEGLAPD 318

Query: 417 AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTI 476
            +T +  + +CSH GLV +G   F  M   YG+EP +EHYGCLVD+L R G L EA+  +
Sbjct: 319 DVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHYGCLVDLLGRAGRLREAEERV 378

Query: 477 ESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWD 536
            +MPM+PN VIW SLL  AR HGN +IGE    +LI++ P+T G YV+LSN+YA+  +WD
Sbjct: 379 LNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLIQLEPETSGNYVLLSNMYASINRWD 438

Query: 537 KVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAG 596
            V  VR++MK  G  K PGSS +E  G +HEF++GDK+HP++ EI+ KL EM  +L   G
Sbjct: 439 DVKRVRKLMKDHGINKVPGSSLVEVGGAMHEFLMGDKTHPRSKEIYLKLEEMSRRLHEYG 498

Query: 597 HVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVT 656
           H P T +VL  IE++ EKE  L  HSERLAIAF LI     +PIRI+KNLRVC DCH+ +
Sbjct: 499 HKPRTLEVLFDIEEE-EKEDALSYHSERLAIAFALIASHHCAPIRIIKNLRVCGDCHTSS 557

Query: 657 KLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           KL+S IY REIIVRD +RFHHFK G+CSC D+W
Sbjct: 558 KLISKIYEREIIVRDRNRFHHFKEGACSCSDYW 590



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 115/484 (23%), Positives = 200/484 (41%), Gaps = 123/484 (25%)

Query: 20  PSRLH--WNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSI 77
           PS  H    +L+   T    +Q+HA  + T LI+H+   SR+  L +   I   H A SI
Sbjct: 6   PSSNHPTLQLLEKCKTLDTLKQVHAHMITTGLIFHTYPLSRI--LLISSTIVFTH-ALSI 62

Query: 78  FDRILQHPSLVLYNLLIKCYV-FNQRSHEALTLFCDLLDRFLL-PDNFTLPCVIKGAARL 135
           F+ I  +P++ LYN LI         +H A +L+  +L    L P+ FT P + K     
Sbjct: 63  FNHI-PNPTIFLYNTLISSLANIKPHTHIAFSLYSRVLTHTTLKPNGFTFPSLFKACGSQ 121

Query: 136 GAIKEGKQIHGLVFK-LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCL 194
             ++ G+ +H  V K L    D FV ++L++ YAK G++   R +F+ +   DL SWN +
Sbjct: 122 PWLRHGRALHTHVLKFLEPTCDPFVQAALLNYYAKCGKVGACRYLFNQISKPDLASWNSI 181

Query: 195 IDGYVKKG-----EVEVAMK---LFDEMPDR----------------------------- 217
           +  YV        +V ++++   LF EM                                
Sbjct: 182 LSAYVHNSGAICEDVSLSLEVLTLFIEMQKSLIKANEVTLVALISACAELGALSQGAWAH 241

Query: 218 ----------DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVD 267
                     + F  T L+D +SKCG +++A ++F ++P+R+ + +NAMI G        
Sbjct: 242 VYVLKHNLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGG-------- 293

Query: 268 SACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVA 327
                                  + ++G   +AL+L + M +  + P+D TLV  + + +
Sbjct: 294 -----------------------FAIHGYGHQALDLFKKMTLEGLAPDDVTLVVTMCSCS 330

Query: 328 GLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTA 387
            + ++ +G                            C   ES   V+    + K+ H+  
Sbjct: 331 HVGLVEEG----------------------------CDVFESMKEVYGV--EPKLEHYGC 360

Query: 388 MIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDY 447
           ++  LG  G   +A +   ++  M MKP A+ +  +L A    G +  G      +I   
Sbjct: 361 LVDLLGRAGRLREAEE---RVLNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLIQ-- 415

Query: 448 GIEP 451
            +EP
Sbjct: 416 -LEP 418


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 248/668 (37%), Positives = 373/668 (55%), Gaps = 28/668 (4%)

Query: 37  TQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKC 96
            + LH LSV       + ++S L  LY    ++    AR +FD +   P  +L+N L+  
Sbjct: 133 ARTLHGLSVAAGYAADTFVASALAKLYFK--LSRGDDARKVFDTV-PSPDTILWNTLLA- 188

Query: 97  YVFNQRSHEALTLFCDLLDR-FLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF 155
                   EAL  F  ++D   + PD+ TL   ++ AA    +  G+ +HG   K G   
Sbjct: 189 ---GLPGSEALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLAE 245

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM- 214
            + V++ L+S+Y+K G++D  + +FD MD+ DLV++N LI GY   G VE +++LF E+ 
Sbjct: 246 HEHVVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELT 305

Query: 215 -----PDRDLFSWTCLVDGFSKCGKVEIAR-----EIFYRMPNRNLVSWNAMINGYMKAG 264
                P+    +   ++  +S  G   +AR      +  R+    LVS  A+   Y +  
Sbjct: 306 ASGWRPNSS--TLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVS-TALTTLYCRLN 362

Query: 265 DVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS 324
           D++SA  +FD M  + + +WN+MI+GY  NG    A+ L + M   +V PN  T+ S LS
Sbjct: 363 DMESARSIFDAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLS 422

Query: 325 AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGH 384
           A A L  L+ G+W+H  I K    ++  + T LI MY+KCGSI  A ++F  +  K V  
Sbjct: 423 ACAHLGALSLGKWVHRIISKEKLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVS 482

Query: 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMI 444
           W AMI G G+HG   +AL L+  M    + PT+ TF+ V+ ACSH GLV++G++ F +M 
Sbjct: 483 WNAMISGYGLHGQGAEALKLYKDMLDARILPTSSTFLSVIYACSHGGLVDEGQKVFRVMT 542

Query: 445 NDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMR---PNFVIWMSLLSGARNHGNK 501
           N+Y I P IEH  C+VD+L R G L EA   I   P     P   +W +LL     H N 
Sbjct: 543 NEYRITPGIEHCTCMVDLLGRAGKLNEALELISEFPQSAIGPG--VWGALLGACMVHKNS 600

Query: 502 DIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEH 561
           D+ + A+  L ++  +  G YV+LSN+Y +   + + + VR+  K R   K PG + IE 
Sbjct: 601 DLAKLASQKLFELDSENAGYYVLLSNLYTSKKHYSEAAVVRQEAKTRKLVKTPGCTLIEI 660

Query: 562 RGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENH 621
               H F+ GD  HPQ++ I+S L  +  K+  AG+ P T   L  +E++ EKE  ++ H
Sbjct: 661 GDRPHVFMAGDHLHPQSEAIYSYLERLTAKMIEAGYQPVTEAALYDVEEE-EKEHMVKVH 719

Query: 622 SERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNG 681
           SE+LAIAFGL++ +  + IRI+KNLRVC DCH+ TK +S +  R I+VRD SRFHHF++G
Sbjct: 720 SEKLAIAFGLLSTEPGTEIRIIKNLRVCLDCHNATKFISKVTQRLIVVRDASRFHHFRDG 779

Query: 682 SCSCKDFW 689
            CSC D+W
Sbjct: 780 VCSCGDYW 787



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 149/590 (25%), Positives = 251/590 (42%), Gaps = 107/590 (18%)

Query: 22  RLHWNILKFSSTHKETQQLHALSVKT-NLIYHSGISSRLLSLYVDPHINNLHYARSIFDR 80
           R +  ++  SST +   QL A+S+ + +       ++ LL  Y        H  R +F R
Sbjct: 21  RSYLRLVALSSTPRHLDQLLAVSLASGHYALDPAPATALLLRYASLRAPPSHLLR-LF-R 78

Query: 81  ILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA-----RL 135
               P   L N L++  + + R H        LL  F  PD+F+        +     R 
Sbjct: 79  AFPCPDRFLRNALLRS-LPSLRPH--------LL--FPSPDSFSFAFAATSLSSSCSSRG 127

Query: 136 GAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLI 195
                 + +HGL    G+  D FV S+L  +Y K    D  R+VFD +   D + WN L+
Sbjct: 128 NDAAAARTLHGLSVAAGYAADTFVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNTLL 187

Query: 196 DGYVKKGEVEVAMKLFDE---MPDRDLFSW------------------------------ 222
            G      +E  +++ D     PD    +                               
Sbjct: 188 AGLPGSEALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHE 247

Query: 223 ---TCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIR 279
              T L+  +SKCG ++ A+ +F RM N +LV++NA+I+GY   G V+S+ ELF ++   
Sbjct: 248 HVVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELTAS 307

Query: 280 DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMH 339
               W                             PN +TLV+ +   +        R +H
Sbjct: 308 G---WR----------------------------PNSSTLVAVIPVYSPFGHELLARCLH 336

Query: 340 SYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMAT 399
           +++VK     D ++ T L  +Y +   +ESA ++F A+ +K +  W AMI G   +G+  
Sbjct: 337 AFVVKARLDADALVSTALTTLYCRLNDMESARSIFDAMLEKTMESWNAMISGYAQNGLTE 396

Query: 400 QALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCL 459
            A+ LF  M  + ++P  IT    L+AC+H G ++ G ++ + +I+   +E  +     L
Sbjct: 397 MAVALFQLMQELNVQPNPITISSTLSACAHLGALSLG-KWVHRIISKEKLELNVYVMTAL 455

Query: 460 VDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTI 519
           +D+  + G + EA+S  + M  + N V W +++SG   HG            +K+  D +
Sbjct: 456 IDMYAKCGSIAEARSIFDRMDNK-NVVSWNAMISGYGLHGQ-------GAEALKLYKDML 507

Query: 520 GCYVV------LSNIYAAA--GQWDKVSEVREMMKKRGFRKDPGSSSIEH 561
              ++      LS IYA +  G  D+  +V  +M    +R  PG   IEH
Sbjct: 508 DARILPTSSTFLSVIYACSHGGLVDEGQKVFRVMTNE-YRITPG---IEH 553


>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
          Length = 855

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 227/644 (35%), Positives = 358/644 (55%), Gaps = 54/644 (8%)

Query: 87  LVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHG 146
           +V +N++I     + R  EAL L  ++  + +  D+ T    +   ARL ++  GKQ+H 
Sbjct: 225 VVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHA 284

Query: 147 LVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEV 206
            V +     D +V S+L+ +YAK G     +RVF+++ D++ VSW  LI G ++      
Sbjct: 285 KVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSK 344

Query: 207 AMKLFDEMPDR----DLFSWTCLVDG---------------------------------- 228
           +++LF++M       D F+   L+ G                                  
Sbjct: 345 SVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLIS 404

Query: 229 -FSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSM 287
            ++KCG ++ A  +F  M  R++VSW +MI  Y + G++  A E FD M  R+ ITWN+M
Sbjct: 405 LYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAM 464

Query: 288 IAGYELNGRFMEALELLETMLI-GDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNG 346
           +  Y  +G   + L++   ML   DV P+  T V+     A +     G  +  + VK G
Sbjct: 465 LGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAG 524

Query: 347 FVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFN 406
            +++  +    I MYSKCG I  A  +F  ++ K V  W AMI G   HGM  QA   F+
Sbjct: 525 LILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFD 584

Query: 407 KMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRT 466
            M   G KP  I+++ VL+ CSH+GLV +G+ YF+MM   +GI P +EH+ C+VD+L R 
Sbjct: 585 DMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRA 644

Query: 467 GYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKV-APDTIGCYVVL 525
           G+L EAK  I+ MPM+P   +W +LLS  + HGN ++ E AA ++ ++ +PD+ G Y++L
Sbjct: 645 GHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDSPDS-GSYMLL 703

Query: 526 SNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKL 585
           + IY+ AG+ D  ++VR++M+ +G +K+PG S +E    +H F   D SHPQ   I +K+
Sbjct: 704 AKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVSHPQVIAIRNKM 763

Query: 586 SEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKN 645
            E+  K+   G+V            + E      +HSE+LA+AFG++++ +  PI I+KN
Sbjct: 764 DELMEKIAHLGYV------------RTESPRSEIHHSEKLAVAFGIMSLPAWMPIHIMKN 811

Query: 646 LRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           LR+C DCH+V KL+S + +RE ++RD  RFHHFK+GSCSC D+W
Sbjct: 812 LRICGDCHTVIKLISSVTDREFVIRDGVRFHHFKSGSCSCGDYW 855



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 114/431 (26%), Positives = 201/431 (46%), Gaps = 50/431 (11%)

Query: 118 LLPDNFT--LPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDL 175
           LLP   T  L   ++     GA+   + +HG +  +G     F+ ++L+  Y   G +  
Sbjct: 14  LLPHAVTQALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSD 73

Query: 176 GRRVFDA-MDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSW------------ 222
            RR+  A + + ++++ N +++GY K+G +  A +LFD MP RD+ SW            
Sbjct: 74  ARRLLRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPAG 133

Query: 223 ---------------------------------TCLVDGFSKCGKVEIAREIFYRMPNRN 249
                                            T LVD F +CG V+ A  +F ++    
Sbjct: 134 SWMSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPT 193

Query: 250 LVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLI 309
           +   N+M+ GY K   +D A E F+DM  RD+++WN MIA    +GR  EAL L+  M  
Sbjct: 194 IFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHR 253

Query: 310 GDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIES 369
             V  +  T  S+L+A A L  L  G+ +H+ ++++   +D  + + LI++Y+KCGS + 
Sbjct: 254 KGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKE 313

Query: 370 ALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSH 429
           A  VF ++  +    WT +I G   +   +++++LFN+M    M         +++ C +
Sbjct: 314 AKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFN 373

Query: 430 AGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWM 489
              +  GR+  ++ +   G    I     L+ +  + G L+ A+    SM  R + V W 
Sbjct: 374 RMDLCLGRQLHSLCLKS-GHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSER-DIVSWT 431

Query: 490 SLLSGARNHGN 500
           S+++     GN
Sbjct: 432 SMITAYSQIGN 442



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 129/580 (22%), Positives = 236/580 (40%), Gaps = 103/580 (17%)

Query: 37  TQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKC 96
            + LH   V   L     + + LL  Y+      L  AR +    ++ P+++ +N+++  
Sbjct: 39  ARALHGRLVTVGLASAVFLQNTLLHAYLS--CGALSDARRLLRADIKEPNVITHNIMMNG 96

Query: 97  YVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAAR----------LGAIKEGKQIHG 146
           Y       +A  LF    DR    D  +   ++   +R          LG  +   Q+ G
Sbjct: 97  YAKQGSLSDAEELF----DRMPRRDVASWNTLMSDTSRPAGSWMSCGALGCRELAPQLLG 152

Query: 147 LVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEV 206
           L +K  F  D  V ++LV M+ + G +D   R+F  ++   +   N ++ GY K   ++ 
Sbjct: 153 LFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDH 212

Query: 207 AMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNL---------------- 250
           A++ F++M +RD+ SW  ++   S+ G+V  A  +   M  + +                
Sbjct: 213 AIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACAR 272

Query: 251 ---VSW--------------------NAMINGYMKAGDVDSACELFDDMEIRDLITWNSM 287
              + W                    +A+I  Y K G    A  +F+ ++ R+ ++W  +
Sbjct: 273 LFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVL 332

Query: 288 IAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGF 347
           I G      F +++EL   M    +  +   L + +S       L  GR +HS  +K+G 
Sbjct: 333 IGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGH 392

Query: 348 VVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNK 407
               V+   LI +Y+KCG +++A  VF ++S++ +  WT+MI      G   +A + F+ 
Sbjct: 393 NRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDG 452

Query: 408 MCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHY-----GC---- 458
           M        AIT+  +L A    G   DG + ++ M++   + P    Y     GC    
Sbjct: 453 MA----TRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIG 508

Query: 459 --------------------------LVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLL 492
                                      + +  + G + EA+   + +  + + V W +++
Sbjct: 509 ANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGK-DVVSWNAMI 567

Query: 493 SGARNHGNKDIGEYAANN----LIKVA-PDTIGCYVVLSN 527
           +G   HG   +G+ AA      L K A PD I    VLS 
Sbjct: 568 TGYSQHG---MGKQAAKTFDDMLSKGAKPDYISYVAVLSG 604



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 109/430 (25%), Positives = 187/430 (43%), Gaps = 76/430 (17%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +QLHA  +++       ++S L+ LY      +   A+ +F+  LQ  + V + +LI   
Sbjct: 280 KQLHAKVIRSLPQIDPYVASALIELYA--KCGSFKEAKRVFNS-LQDRNSVSWTVLIGGS 336

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
           +  +   +++ LF  +    +  D F L  +I G      +  G+Q+H L  K G     
Sbjct: 337 LQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAI 396

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
            V +SL+S+YAK G++     VF +M ++D+VSW  +I  Y + G +  A + FD M  R
Sbjct: 397 VVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATR 456

Query: 218 DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS--W---------------------- 253
           +  +W  ++  + + G  E   +++  M ++  V+  W                      
Sbjct: 457 NAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQI 516

Query: 254 ----------------NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRF 297
                           NA I  Y K G +  A +LFD +  +D+++WN+MI GY  +G  
Sbjct: 517 IGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMG 576

Query: 298 MEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLL 357
            +A +  + ML     P+  + V+ LS  +           HS +V+         G L 
Sbjct: 577 KQAAKTFDDMLSKGAKPDYISYVAVLSGCS-----------HSGLVQE--------GKLY 617

Query: 358 IQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA 417
             M ++   I   L            H++ M+  LG  G  T+A DL +K   M MKPTA
Sbjct: 618 FDMMTRVHGISPGLE-----------HFSCMVDLLGRAGHLTEAKDLIDK---MPMKPTA 663

Query: 418 ITFIGVLNAC 427
             +  +L+AC
Sbjct: 664 EVWGALLSAC 673


>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
 gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 606

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 231/574 (40%), Positives = 341/574 (59%), Gaps = 29/574 (5%)

Query: 137 AIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRR-VFDAMDDK---DLVSWN 192
           A+ +  QIH  + KLG   +  VL+   S+ +     D     +F A  D    D   +N
Sbjct: 41  ALPKLTQIHTHILKLGLHNNPLVLTKFASISSLIHATDYAASFLFSAEADTRLYDAFLFN 100

Query: 193 CLIDGYVKKGEV-EVAMKLFDEM------PDRDLFSWTCLVDGFSKCGKVEIAREIFYRM 245
            LI  Y + G   + A+ L+  M      P++  + +         C  +E+      + 
Sbjct: 101 TLIRAYAQTGHSKDKALALYGIMLHDAILPNKFTYPFV-----LKACAGLEVLN--LGQT 153

Query: 246 PNRNLVSW---------NAMINGY-MKAGDVDSACELFDDMEIRDLITWNSMIAGYELNG 295
            + ++V +         N M++ Y   AG ++SA ++FD+M   D +TW++MI GY   G
Sbjct: 154 VHGSVVKFGFDCDIHVQNTMVHMYSCCAGGINSARKVFDEMPKSDSVTWSAMIGGYARVG 213

Query: 296 RFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGT 355
           R  EA+ L   M + +V P++ T+VS LSA   L  L  G+W+ +YI ++       +  
Sbjct: 214 RSTEAVALFREMQMAEVCPDEITMVSMLSACTDLGALELGKWIEAYIERHEIHKPVEVSN 273

Query: 356 LLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKP 415
            LI M++KCG I  AL +FRA+++K +  WT++IVG+ MHG   +A  LF +M   G+ P
Sbjct: 274 ALIDMFAKCGDISKALKLFRAMNEKTIVSWTSVIVGMAMHGRGQEATCLFEEMTSSGVAP 333

Query: 416 TAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKST 475
             + FIG+L+ACSH+GLV  GR YF  M+  Y + P IEHYGC+VD+ CRTG ++EA   
Sbjct: 334 DDVAFIGLLSACSHSGLVERGREYFGSMMKKYKLVPKIEHYGCMVDMYCRTGLVKEALEF 393

Query: 476 IESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQW 535
           + +MP+ PN VI  +L+S  R HG   +GE     L+K  P     YV+LSNIYA    W
Sbjct: 394 VRNMPIEPNPVILRTLVSACRGHGEFKLGEKITKLLMKHEPLHESNYVLLSNIYAKTLSW 453

Query: 536 DKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAA 595
           +K +++RE+M+ +G +K PGS+ IE    ++EFV GDKSH Q  EI+  + EM  ++K +
Sbjct: 454 EKKTKIREVMEVKGMKKVPGSTMIEIDNEIYEFVAGDKSHKQHKEIYEMVDEMGREMKKS 513

Query: 596 GHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSV 655
           G+ P T++VLL I ++++KE  L  HSE+LAIAFGL+     +PIRIVKNLRVC+DCHS 
Sbjct: 514 GYRPSTSEVLLDI-NEEDKEDSLNRHSEKLAIAFGLLRTPPGTPIRIVKNLRVCSDCHSA 572

Query: 656 TKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           +K +S IY+REII+RD +RFHHFK+G CSC DFW
Sbjct: 573 SKFISKIYDREIIMRDRNRFHHFKSGQCSCGDFW 606



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 114/237 (48%), Gaps = 11/237 (4%)

Query: 71  LHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIK 130
           ++ AR +FD + +  S V ++ +I  Y    RS EA+ LF ++    + PD  T+  ++ 
Sbjct: 184 INSARKVFDEMPKSDS-VTWSAMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSMLS 242

Query: 131 GAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVS 190
               LGA++ GK I   + +        V ++L+ M+AK G+I    ++F AM++K +VS
Sbjct: 243 ACTDLGALELGKWIEAYIERHEIHKPVEVSNALIDMFAKCGDISKALKLFRAMNEKTIVS 302

Query: 191 WNCLIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREIFYRMP 246
           W  +I G    G  + A  LF+EM       D  ++  L+   S  G VE  RE F  M 
Sbjct: 303 WTSVIVGMAMHGRGQEATCLFEEMTSSGVAPDDVAFIGLLSACSHSGLVERGREYFGSMM 362

Query: 247 NR-----NLVSWNAMINGYMKAGDVDSACELFDDMEIR-DLITWNSMIAGYELNGRF 297
            +      +  +  M++ Y + G V  A E   +M I  + +   ++++    +G F
Sbjct: 363 KKYKLVPKIEHYGCMVDMYCRTGLVKEALEFVRNMPIEPNPVILRTLVSACRGHGEF 419


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 243/659 (36%), Positives = 374/659 (56%), Gaps = 12/659 (1%)

Query: 39   QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYV 98
            QLH+ ++K  +     +   LL LY      ++  A   F    +  ++VL+N+++  Y 
Sbjct: 383  QLHSHAIKAGMSADIILEGSLLDLY--SKCADVETAHKFF-LXTETENIVLWNVMLVAYG 439

Query: 99   FNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKF 158
                  ++  +F  +    ++P+ FT P +++    LGA+  G+QIH  V K GF  + +
Sbjct: 440  QLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVY 499

Query: 159  VLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRD 218
            V S L+ MYAK+G++ L  R+   + + D+VSW  +I GYV+      A++LF+EM  R 
Sbjct: 500  VCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRG 559

Query: 219  L-FSWTCLVDGFSKCGKV-------EIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSAC 270
            + F         S C  +       +I  + +      +L   NA+I+ Y + G +  A 
Sbjct: 560  IQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAY 619

Query: 271  ELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLA 330
              F+ +  ++ I+WNS+++G   +G F EAL++   ML  +   N  T  SA+SA A LA
Sbjct: 620  LAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLA 679

Query: 331  VLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIV 390
             + +G+ +HS ++K G+  +  +   LI +Y+K GSI  A   F  +S++ V  W AMI 
Sbjct: 680  NIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMIT 739

Query: 391  GLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIE 450
            G   HG   +AL LF +M   G+ P  +TF+GVL+ACSH GLV +G  YF  M   + + 
Sbjct: 740  GYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLV 799

Query: 451  PTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANN 510
            P  EHY C+VD+L R G L+ A   I+ MP+  + +IW +LLS    H N +IGE AA++
Sbjct: 800  PKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHH 859

Query: 511  LIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVV 570
            L+++ P+    YV++SNIYA + QW      R++MK  G +K+PG S IE +  +H F  
Sbjct: 860  LLELEPEDSATYVLISNIYAVSRQWIHRDWSRKLMKDXGVKKEPGRSWIEVKNAVHAFYA 919

Query: 571  GDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFG 630
            GDK HP T++I+  +  +  +    G+V D+   LL   +Q +K+     HSE+LAIAFG
Sbjct: 920  GDKLHPLTNQIYEYIGHLNRRTSEIGYVQDSFS-LLNESEQGQKDPITHVHSEKLAIAFG 978

Query: 631  LINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            L+++ +  PIR++KNLRVCNDCH+  K +S I NR IIVRD  RFHHF  G CSCKDFW
Sbjct: 979  LLSLGNNIPIRVMKNLRVCNDCHNWIKYVSKISNRSIIVRDAHRFHHFDGGVCSCKDFW 1037



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 117/438 (26%), Positives = 207/438 (47%), Gaps = 16/438 (3%)

Query: 72  HYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKG 131
           H A  +FD    + S+  +N +I  +V  + + +   LF  +L   + P+ +T   V+K 
Sbjct: 110 HGAVKVFDEN-SNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLK- 167

Query: 132 AARLG---AIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDL 188
            A +G   A    KQ+H   F  GF     V + L+ +Y+K G I+  ++VF+ +  KD+
Sbjct: 168 -ACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDI 226

Query: 189 VSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFS----WTCLVDGFSKCGKVEIAREIFYR 244
           V+W  +I G  + G  E A+ LF +M   ++F      + ++   +K    E+  ++   
Sbjct: 227 VTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCL 286

Query: 245 MPNRNLVSWNAMING----YMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEA 300
           +      S   + NG    Y ++  + SA  +F  M  RD +++NS+I+G    G    A
Sbjct: 287 VIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRA 346

Query: 301 LELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQM 360
           LEL   M    + P+  T+ S LSA A +  L+KG  +HS+ +K G   D +L   L+ +
Sbjct: 347 LELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDL 406

Query: 361 YSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITF 420
           YSKC  +E+A   F     + +  W  M+V  G     + + ++F +M   GM P   T+
Sbjct: 407 YSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTY 466

Query: 421 IGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP 480
             +L  C+  G +  G +    +I   G +  +     L+D+  + G L  A   +  +P
Sbjct: 467 PSILRTCTSLGALYLGEQIHTHVIKT-GFQLNVYVCSVLIDMYAKYGQLALALRILRRLP 525

Query: 481 MRPNFVIWMSLLSGARNH 498
              + V W ++++G   H
Sbjct: 526 -EDDVVSWTAMIAGYVQH 542



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 102/376 (27%), Positives = 183/376 (48%), Gaps = 15/376 (3%)

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD 187
           +++G    G++ E  ++H  + K GF  +  ++ SLV  Y + G+     +VFD   ++ 
Sbjct: 64  LLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRS 123

Query: 188 LVSWNCLIDGYVKKGEVEVAMKLFDEM------PDRDLFSWT--CLVDG---FSKCGKVE 236
           + SWN +I  +V +        LF  M      P+   F+      V G   F+   +V 
Sbjct: 124 VFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVH 183

Query: 237 IAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGR 296
            +R  +Y   +  LV+ N +I+ Y K G ++SA ++F+ + ++D++TW +MI+G   NG 
Sbjct: 184 -SRTFYYGFDSSPLVA-NLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGL 241

Query: 297 FMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTL 356
             EA+ L   M   ++ P    L S LSA   + +   G  +H  ++K GF  +  +   
Sbjct: 242 EEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNG 301

Query: 357 LIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT 416
           L+ +YS+   + SA  +F  ++ +    + ++I GL   G + +AL+LF KM R  +KP 
Sbjct: 302 LVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPD 361

Query: 417 AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTI 476
            IT   +L+AC+  G ++ G +  +  I   G+   I   G L+D+  +   +E A    
Sbjct: 362 CITVASLLSACASVGALHKGMQLHSHAIKA-GMSADIILEGSLLDLYSKCADVETAHKFF 420

Query: 477 ESMPMRPNFVIWMSLL 492
                  N V+W  +L
Sbjct: 421 LXTETE-NIVLWNVML 435



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 78/271 (28%), Positives = 132/271 (48%), Gaps = 23/271 (8%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           ++ QQ+HA S          I++ L+SLY       +  A   F++I    + + +N L+
Sbjct: 581 RQGQQIHAQSYAAGFGADLSINNALISLY--ARCGRIQEAYLAFEKIGDKNN-ISWNSLV 637

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
                +    EAL +F  +L      + FT    I  AA L  IK+G+QIH +V K G+ 
Sbjct: 638 SGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYD 697

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDE- 213
            ++ V +SL+S+YAK G I    R F+ M +++++SWN +I GY + G    A++LF+E 
Sbjct: 698 SEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEM 757

Query: 214 -----MPDRDLFSWTCLVDGFSKCGKVEIARE---IFYRMPN-RNLVS----WNAMINGY 260
                MP+   F     V   S C  + + +E    F  M    +LV     +  +++  
Sbjct: 758 KVCGIMPNHVTF-----VGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLL 812

Query: 261 MKAGDVDSACELFDDMEI-RDLITWNSMIAG 290
            +AG +D A E   +M I  D + W ++++ 
Sbjct: 813 GRAGQLDRAMEYIKEMPIPADAMIWRTLLSA 843



 Score = 42.7 bits (99), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 84/183 (45%), Gaps = 17/183 (9%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           K+ QQ+H++ +KT       +S+ L+SLY      ++  A   F+  +   +++ +N +I
Sbjct: 682 KQGQQIHSMVLKTGYDSEREVSNSLISLYAKS--GSISDAWREFND-MSERNVISWNAMI 738

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGK-------QIHGL 147
             Y  +    EAL LF ++    ++P++ T   V+   + +G +KEG        +IH L
Sbjct: 739 TGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDL 798

Query: 148 VFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD-DKDLVSWNCLIDGYVKKGEVEV 206
           V K     + +V   +V +  + G++D        M    D + W  L+   V    +E+
Sbjct: 799 VPKS----EHYV--CVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEI 852

Query: 207 AMK 209
             +
Sbjct: 853 GER 855


>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 232/658 (35%), Positives = 374/658 (56%), Gaps = 12/658 (1%)

Query: 40  LHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVF 99
           +H  ++K+N      +++ L+++Y       +  A  +F  +L     V +N L+   V 
Sbjct: 270 IHGAALKSNHFADVYVANALIAMYAK--CGRMEDAERVFASMLCR-DYVSWNTLLSGLVQ 326

Query: 100 NQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFV 159
           N+   +AL  F D+ +    PD  ++  +I  + R G +  GK++H    + G   +  +
Sbjct: 327 NELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEVHAYAIRNGLDSNMQI 386

Query: 160 LSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP---- 215
            ++L+ MYAK   +      F+ M +KDL+SW  +I GY +      A+ LF ++     
Sbjct: 387 GNTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQNECHLEAINLFRKVQVKGM 446

Query: 216 DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS---WNAMINGYMKAGDVDSACEL 272
           D D      ++   S        REI   +  R+L      NA++N Y + G  D A   
Sbjct: 447 DVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLADIMLQNAIVNVYGEVGHRDYARRA 506

Query: 273 FDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVL 332
           F+ +  +D+++W SMI     NG  +EALEL  ++   ++ P+   ++SALSA A L+ L
Sbjct: 507 FESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSL 566

Query: 333 NKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGL 392
            KG+ +H ++++ GF ++G + + L+ MY+ CG++E++  +F ++ ++ +  WT+MI   
Sbjct: 567 KKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINAN 626

Query: 393 GMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT 452
           GMHG   +A+ LF KM    + P  ITF+ +L ACSH+GL+ +G+R+F +M   Y +EP 
Sbjct: 627 GMHGCGNEAIALFKKMTDENVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPW 686

Query: 453 IEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLI 512
            EHY C+VD+L R+  LEEA   + SMP++P+  +W +LL     H NK++GE AA  L+
Sbjct: 687 PEHYACMVDLLSRSNSLEEAYQFVRSMPIKPSSEVWCALLGACHIHSNKELGELAAKELL 746

Query: 513 KVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGD 572
           +      G Y ++SNI+AA G+W+ V EVR  MK  G +K+PG S IE    +H F+  D
Sbjct: 747 QSDTKNSGKYALISNIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVDNKIHTFMARD 806

Query: 573 KSHPQTDEIHSKLSEMRNKL-KAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGL 631
           KSHPQTD+I+ KL++    L K  G++  T  V   + ++ EK   L  HSERLA+ +GL
Sbjct: 807 KSHPQTDDIYLKLAQFTKLLGKKGGYIAQTKFVFHNVSEE-EKTQMLYRHSERLALGYGL 865

Query: 632 INVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           +     + IRI KNLR+C+DCH+  K+ S +  R ++VRD +RFHHF+ G CSC DFW
Sbjct: 866 LVTPKGTSIRITKNLRICDDCHTFFKIASEVSQRALVVRDANRFHHFERGLCSCGDFW 923



 Score =  175 bits (444), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 151/580 (26%), Positives = 278/580 (47%), Gaps = 39/580 (6%)

Query: 2   QTQTLQHSSPIHALQQHLPSRL---HWNILKFSSTHK---ETQQLHALSVKTNLIYHSGI 55
           Q+ TL  + P+       PSRL   H  +L      K   + QQLHA  +K++L   + +
Sbjct: 29  QSLTLLSTHPLAT-----PSRLEHAHSLLLDLCVAVKALPQGQQLHARLLKSHL--SAFL 81

Query: 56  SSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLD 115
           +++LL +Y      +L  A  +FD + +  ++  +N ++  +V + +  EA+ L+ ++  
Sbjct: 82  ATKLLHMY--EKCGSLKDAVKVFDEMTER-TIFTWNAMMGAFVSSGKYLEAIELYKEMRV 138

Query: 116 RFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDL 175
             +  D  T P V+K    LG  + G +IHG+  K GFG   FV ++L++MY K G++  
Sbjct: 139 LGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGFGEFVFVCNALIAMYGKCGDLGG 198

Query: 176 GRRVFDA--MDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD----RDLFSWTCLVDGF 229
            R +FD   M+ +D VSWN +I  +V +G+   A+ LF  M +     + +++   + G 
Sbjct: 199 ARVLFDGIMMEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQEVGVASNTYTFVAALQGV 258

Query: 230 SKCGKVEIAREIFYRMPNRN----LVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWN 285
                V++   I       N    +   NA+I  Y K G ++ A  +F  M  RD ++WN
Sbjct: 259 EDPSFVKLGMGIHGAALKSNHFADVYVANALIAMYAKCGRMEDAERVFASMLCRDYVSWN 318

Query: 286 SMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKN 345
           ++++G   N  + +AL     M      P+  ++++ ++A      L  G+ +H+Y ++N
Sbjct: 319 TLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEVHAYAIRN 378

Query: 346 GFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLF 405
           G   +  +G  LI MY+KC  ++     F  + +K +  WT +I G   +    +A++LF
Sbjct: 379 GLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQNECHLEAINLF 438

Query: 406 NKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIE---PTIEHYGCLVDI 462
            K+   GM    +    VL ACS  GL +   R F   I+ Y  +     I     +V++
Sbjct: 439 RKVQVKGMDVDPMMIGSVLRACS--GLKS---RNFIREIHGYVFKRDLADIMLQNAIVNV 493

Query: 463 LCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG--NKDIGEYAANNLIKVAPDTIG 520
               G+ + A+   ES+  + + V W S+++   ++G   + +  + +     + PD+I 
Sbjct: 494 YGEVGHRDYARRAFESIRSK-DIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIA 552

Query: 521 CYVVLSNIYAAAGQWDKVSEVREMMKKRG-FRKDPGSSSI 559
               LS   A      K  E+   + ++G F + P +SS+
Sbjct: 553 IISALSAT-ANLSSLKKGKEIHGFLIRKGFFLEGPIASSL 591



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 141/530 (26%), Positives = 252/530 (47%), Gaps = 24/530 (4%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRIL-QHPSLVLYNLLIKCY 97
           ++H ++VK        + + L+++Y      +L  AR +FD I+ +    V +N +I  +
Sbjct: 166 EIHGVAVKCGFGEFVFVCNALIAMY--GKCGDLGGARVLFDGIMMEKEDTVSWNSIISAH 223

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
           V   +  EAL+LF  + +  +  + +T    ++G      +K G  IHG   K     D 
Sbjct: 224 VTEGKCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAALKSNHFADV 283

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
           +V ++L++MYAK G ++   RVF +M  +D VSWN L+ G V+      A+  F +M + 
Sbjct: 284 YVANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNS 343

Query: 218 ----DLFSWTCLVDGFSKCGKVEIAREIF-YRMPN---RNLVSWNAMINGYMKAGDVDSA 269
               D  S   L+    + G +   +E+  Y + N    N+   N +I+ Y K   V   
Sbjct: 344 AQKPDQVSVLNLIAASGRSGNLLNGKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHM 403

Query: 270 CELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGL 329
              F+ M  +DLI+W ++IAGY  N   +EA+ L   + +  +  +   + S L A +GL
Sbjct: 404 GYAFECMHEKDLISWTTIIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGL 463

Query: 330 AVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMI 389
              N  R +H Y+ K   + D +L   ++ +Y + G  + A   F +I  K +  WT+MI
Sbjct: 464 KSRNFIREIHGYVFKRD-LADIMLQNAIVNVYGEVGHRDYARRAFESIRSKDIVSWTSMI 522

Query: 390 VGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIND-YG 448
                +G+  +AL+LF  + +  ++P +I  I  L+A ++   +  G+     +I   + 
Sbjct: 523 TCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFF 582

Query: 449 IEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNH--GNKDIGEY 506
           +E  I     LVD+    G +E ++    S+  R + ++W S+++    H  GN+ I  +
Sbjct: 583 LEGPIA--SSLVDMYACCGTVENSRKMFHSVKQR-DLILWTSMINANGMHGCGNEAIALF 639

Query: 507 AANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVR--EMMKKRGFRKDP 554
                  V PD I     L+ +YA +     V   R  E+M K G++ +P
Sbjct: 640 KKMTDENVIPDHI---TFLALLYACSHSGLMVEGKRFFEIM-KYGYQLEP 685


>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
          Length = 865

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 227/644 (35%), Positives = 358/644 (55%), Gaps = 54/644 (8%)

Query: 87  LVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHG 146
           +V +N++I     + R  EAL L  ++  + +  D+ T    +   ARL ++  GKQ+H 
Sbjct: 235 VVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHA 294

Query: 147 LVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEV 206
            V +     D +V S+L+ +YAK G     +RVF+++ D++ VSW  LI G ++      
Sbjct: 295 KVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSK 354

Query: 207 AMKLFDEMPDR----DLFSWTCLVDG---------------------------------- 228
           +++LF++M       D F+   L+ G                                  
Sbjct: 355 SVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLIS 414

Query: 229 -FSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSM 287
            ++KCG ++ A  +F  M  R++VSW +MI  Y + G++  A E FD M  R+ ITWN+M
Sbjct: 415 LYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAM 474

Query: 288 IAGYELNGRFMEALELLETMLI-GDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNG 346
           +  Y  +G   + L++   ML   DV P+  T V+     A +     G  +  + VK G
Sbjct: 475 LGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAG 534

Query: 347 FVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFN 406
            +++  +    I MYSKCG I  A  +F  ++ K V  W AMI G   HGM  QA   F+
Sbjct: 535 LILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFD 594

Query: 407 KMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRT 466
            M   G KP  I+++ VL+ CSH+GLV +G+ YF+MM   +GI P +EH+ C+VD+L R 
Sbjct: 595 DMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRA 654

Query: 467 GYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKV-APDTIGCYVVL 525
           G+L EAK  I+ MPM+P   +W +LLS  + HGN ++ E AA ++ ++ +PD+ G Y++L
Sbjct: 655 GHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDSPDS-GSYMLL 713

Query: 526 SNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKL 585
           + IY+ AG+ D  ++VR++M+ +G +K+PG S +E    +H F   D SHPQ   I +K+
Sbjct: 714 AKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVSHPQVIAIRNKM 773

Query: 586 SEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKN 645
            E+  K+   G+V            + E      +HSE+LA+AFG++++ +  PI I+KN
Sbjct: 774 DELMEKIAHLGYV------------RTESPRSEIHHSEKLAVAFGIMSLPAWMPIHIMKN 821

Query: 646 LRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           LR+C DCH+V KL+S + +RE ++RD  RFHHFK+GSCSC D+W
Sbjct: 822 LRICGDCHTVIKLISSVTDREFVIRDGVRFHHFKSGSCSCGDYW 865



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 101/374 (27%), Positives = 172/374 (45%), Gaps = 42/374 (11%)

Query: 167 YAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLF-------DEMPDRDL 219
           YAK G +     +FD M  +D+ SWN L+ GY +       ++ F       D +P+   
Sbjct: 81  YAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFT 140

Query: 220 FS---------------------------W------TCLVDGFSKCGKVEIAREIFYRMP 246
           F                            W      T LVD F +CG V+ A  +F ++ 
Sbjct: 141 FCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIE 200

Query: 247 NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLET 306
              +   N+M+ GY K   +D A E F+DM  RD+++WN MIA    +GR  EAL L+  
Sbjct: 201 RPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVE 260

Query: 307 MLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGS 366
           M    V  +  T  S+L+A A L  L  G+ +H+ ++++   +D  + + LI++Y+KCGS
Sbjct: 261 MHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGS 320

Query: 367 IESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNA 426
            + A  VF ++  +    WT +I G   +   +++++LFN+M    M         +++ 
Sbjct: 321 FKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISG 380

Query: 427 CSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFV 486
           C +   +  GR+  ++ +   G    I     L+ +  + G L+ A+    SM  R + V
Sbjct: 381 CFNRMDLCLGRQLHSLCLKS-GHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSER-DIV 438

Query: 487 IWMSLLSGARNHGN 500
            W S+++     GN
Sbjct: 439 SWTSMITAYSQIGN 452



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 127/537 (23%), Positives = 227/537 (42%), Gaps = 89/537 (16%)

Query: 70  NLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDL-LDRFLLPDNFTLPCV 128
           +L  A  +FDR+ +   +  +N L+  Y   +R  + L  F  +      LP+ FT  CV
Sbjct: 86  SLSDAEELFDRMPRR-DVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCV 144

Query: 129 IKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDL 188
           +K    LG  +   Q+ GL +K  F  D  V ++LV M+ + G +D   R+F  ++   +
Sbjct: 145 MKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTI 204

Query: 189 VSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR 248
              N ++ GY K   ++ A++ F++M +RD+ SW  ++   S+ G+V  A  +   M  +
Sbjct: 205 FCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRK 264

Query: 249 NL-------------------VSW--------------------NAMINGYMKAGDVDSA 269
            +                   + W                    +A+I  Y K G    A
Sbjct: 265 GVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEA 324

Query: 270 CELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGL 329
             +F+ ++ R+ ++W  +I G      F +++EL   M    +  +   L + +S     
Sbjct: 325 KRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNR 384

Query: 330 AVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMI 389
             L  GR +HS  +K+G     V+   LI +Y+KCG +++A  VF ++S++ +  WT+MI
Sbjct: 385 MDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMI 444

Query: 390 VGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGI 449
                 G   +A + F+ M        AIT+  +L A    G   DG + ++ M++   +
Sbjct: 445 TAYSQIGNIIKAREFFDGMA----TRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDV 500

Query: 450 EPTIEHY-----GC------------------------------LVDILCRTGYLEEAKS 474
            P    Y     GC                               + +  + G + EA+ 
Sbjct: 501 TPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQK 560

Query: 475 TIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANN----LIKVA-PDTIGCYVVLS 526
             + +  + + V W ++++G   HG   +G+ AA      L K A PD I    VLS
Sbjct: 561 LFDLLNGK-DVVSWNAMITGYSQHG---MGKQAAKTFDDMLSKGAKPDYISYVAVLS 613



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 109/430 (25%), Positives = 187/430 (43%), Gaps = 76/430 (17%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +QLHA  +++       ++S L+ LY      +   A+ +F+  LQ  + V + +LI   
Sbjct: 290 KQLHAKVIRSLPQIDPYVASALIELYA--KCGSFKEAKRVFNS-LQDRNSVSWTVLIGGS 346

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
           +  +   +++ LF  +    +  D F L  +I G      +  G+Q+H L  K G     
Sbjct: 347 LQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAI 406

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
            V +SL+S+YAK G++     VF +M ++D+VSW  +I  Y + G +  A + FD M  R
Sbjct: 407 VVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATR 466

Query: 218 DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS--W---------------------- 253
           +  +W  ++  + + G  E   +++  M ++  V+  W                      
Sbjct: 467 NAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQI 526

Query: 254 ----------------NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRF 297
                           NA I  Y K G +  A +LFD +  +D+++WN+MI GY  +G  
Sbjct: 527 IGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMG 586

Query: 298 MEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLL 357
            +A +  + ML     P+  + V+ LS  +           HS +V+         G L 
Sbjct: 587 KQAAKTFDDMLSKGAKPDYISYVAVLSGCS-----------HSGLVQE--------GKLY 627

Query: 358 IQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA 417
             M ++   I   L            H++ M+  LG  G  T+A DL +K   M MKPTA
Sbjct: 628 FDMMTRVHGISPGLE-----------HFSCMVDLLGRAGHLTEAKDLIDK---MPMKPTA 673

Query: 418 ITFIGVLNAC 427
             +  +L+AC
Sbjct: 674 EVWGALLSAC 683



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 135/312 (43%), Gaps = 39/312 (12%)

Query: 219 LFSWTCLVDGFSKCGKVEIAREIFYR-MPNRNLVSWNAMINGYMKAGDVDSACELFDDME 277
           +F    L+  +  CG +  AR +    +   N+++ N M+NGY K G +  A ELFD M 
Sbjct: 39  VFLQNTLLHAYLSCGALSDARRLLRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMP 98

Query: 278 IRDLITWNSMIAGYELNGRFMEALELLETM-LIGDVLPNDATLVSALSAVAGLAVLNKGR 336
            RD+ +WN++++GY    RF++ LE   +M   GD LPN  T    + +   L       
Sbjct: 99  RRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKSCGALGCRELAP 158

Query: 337 WMHSYIVKNGFVVDGVLGTLLIQMYSKCG------------------------------- 365
            +     K  F  D  + T L+ M+ +CG                               
Sbjct: 159 QLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLY 218

Query: 366 SIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN 425
            I+ A+  F  ++++ V  W  MI  L   G   +AL L  +M R G++  + T+   L 
Sbjct: 219 GIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLT 278

Query: 426 ACSHAGLVNDGRRYFNMMINDYGIEPTIEHY--GCLVDILCRTGYLEEAKSTIESMPMRP 483
           AC+    +  G++    +I      P I+ Y    L+++  + G  +EAK    S+  R 
Sbjct: 279 ACARLFSLGWGKQLHAKVIRSL---PQIDPYVASALIELYAKCGSFKEAKRVFNSLQDR- 334

Query: 484 NFVIWMSLLSGA 495
           N V W  L+ G+
Sbjct: 335 NSVSWTVLIGGS 346


>gi|302760085|ref|XP_002963465.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
 gi|300168733|gb|EFJ35336.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
          Length = 829

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 226/667 (33%), Positives = 384/667 (57%), Gaps = 19/667 (2%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYV 98
           ++H + V + L     +S+ LL++Y      +L +A+ +F ++ +  +++ ++++   + 
Sbjct: 166 RIHQMVVDSRLEIDPKVSNALLNMY--KKCGSLSHAKRVFAKMERTRNVISWSIMAGAHA 223

Query: 99  FNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKF 158
            +    EAL  F  +L   +      +  ++   +    +++G+ IH  +   GF  +  
Sbjct: 224 LHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRLIHSCIALSGFESELL 283

Query: 159 VLSSLVSMYAKFGEIDLGRRVFDAMDD--KDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD 216
           V +++++MY + G ++  R+VFDAMD+  +D+VSWN ++  YV     + A++L+  M  
Sbjct: 284 VANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSAYVHNDRGKDAIQLYQRMQL 343

Query: 217 R-DLFSWTCLVDGFSKCGKVEIAREIFYRMPN----RNLVSWNAMINGYMKAGDVDSACE 271
           R D  ++  L+   S    V + R +  ++ N    +N++  NA+++ Y K G    A  
Sbjct: 344 RADKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARA 403

Query: 272 LFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGD-------VLPNDATLVSALS 324
           +FD ME R +I+W ++I+ Y       EA  L + ML  +       V P+    V+ L+
Sbjct: 404 VFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILN 463

Query: 325 AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAI-SKKKVG 383
           A A ++ L +G+ +       G   D  +GT ++ +Y KCG IE    +F  + S+  V 
Sbjct: 464 ACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEGRRIFDGVCSRPDVQ 523

Query: 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMM 443
            W AMI      G + +AL LF +M   G++P + +F+ +L ACSH GL + G+ YF  M
Sbjct: 524 LWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSILLACSHTGLEDQGKSYFTSM 583

Query: 444 INDY-GIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKD 502
             +Y  +  TI+H+GC+ D+L R G L+EA+  +E +P++P+ V W SLL+  RNH +  
Sbjct: 584 TTEYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKLPVKPDAVAWTSLLAACRNHRDLK 643

Query: 503 IGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHR 562
             +  AN L+++ P     YV LSNIYA   +W  V++VR+ M ++G +K+ G S+IE  
Sbjct: 644 RAKEVANKLLRLEPRCATGYVALSNIYAELQKWHAVAKVRKFMAEQGVKKERGVSTIEIG 703

Query: 563 GVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHS 622
             +H+F  GD +HP+  EI  +L+++ +++K  G+VPDT  VL  + D++EKE  L +HS
Sbjct: 704 KYMHDFATGDDAHPRNREIREELAKLHSQMKECGYVPDTKMVLHFV-DEQEKERLLFSHS 762

Query: 623 ERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGS 682
           ERLAIA GLI+    +P+R+ KNLRVC+DCH+ TKL+S I  R+I+VRD +RFH FK+G 
Sbjct: 763 ERLAIALGLISTPLGTPLRVTKNLRVCSDCHTATKLISKIAGRKIVVRDPTRFHLFKDGK 822

Query: 683 CSCKDFW 689
           CSC+D+W
Sbjct: 823 CSCQDYW 829



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 116/477 (24%), Positives = 231/477 (48%), Gaps = 26/477 (5%)

Query: 36  ETQQLHALSVKTNLIYHSGI-SSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           E +++H+L+VK NL+  + I  + ++S+Y   H ++   A++ FD  L+  +L  +  L+
Sbjct: 61  EGRKIHSLAVKHNLLPGNLILGNHIVSMYA--HCDSPGDAKAAFD-ALEQRNLYSWTGLV 117

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
             +  + +S E L     +    + PD  T    +       ++++G +IH +V      
Sbjct: 118 AAFAISGQSKETLRALERMRQDGVRPDAVTFITALGSCGDPESLRDGIRIHQMVVDSRLE 177

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMD-DKDLVSWNCLIDGYVKKGEVEVAMKLFDE 213
            D  V ++L++MY K G +   +RVF  M+  ++++SW+ +   +   G V  A++ F  
Sbjct: 178 IDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSIMAGAHALHGNVWEALRHFRF 237

Query: 214 MPDRDL-FSWTCLVDGFSKCGKVEIARE-------IFYRMPNRNLVSWNAMINGYMKAGD 265
           M    +  + + +V   S C    + ++       I        L+  NA++  Y + G 
Sbjct: 238 MLLLGIKATKSAMVTILSACSSPALVQDGRLIHSCIALSGFESELLVANAVMTMYGRCGA 297

Query: 266 VDSACELFDDME--IRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSAL 323
           V+ A ++FD M+  +RD+++WN M++ Y  N R  +A++L + M    +  +  T VS L
Sbjct: 298 VEEARKVFDAMDEALRDVVSWNIMLSAYVHNDRGKDAIQLYQRM---QLRADKVTYVSLL 354

Query: 324 SAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVG 383
           SA +    +  GR +H  IV +    + ++G  L+ MY+KCGS   A  VF  + ++ + 
Sbjct: 355 SACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARAVFDKMEQRSII 414

Query: 384 HWTAMIVGLGMHGMATQALDLFNKMCRMG-------MKPTAITFIGVLNACSHAGLVNDG 436
            WT +I       +  +A  LF +M  +        +KP A+ F+ +LNAC+    +  G
Sbjct: 415 SWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILNACADVSALEQG 474

Query: 437 RRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLS 493
            +  +      G+         +V++  + G +EE +   + +  RP+  +W ++++
Sbjct: 475 -KMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEGRRIFDGVCSRPDVQLWNAMIA 530



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 108/401 (26%), Positives = 192/401 (47%), Gaps = 29/401 (7%)

Query: 112 DLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSS-LVSMYAKF 170
           DL  + +  +N T   +++  AR  A+ EG++IH L  K        +L + +VSMYA  
Sbjct: 33  DLEKQAVRAENATYARLLQRCARAQALPEGRKIHSLAVKHNLLPGNLILGNHIVSMYAHC 92

Query: 171 GEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTC 224
                 +  FDA++ ++L SW  L+  +   G+ +  ++  + M      PD   F    
Sbjct: 93  DSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTF---- 148

Query: 225 LVDGFSKCGKVEIARE--------IFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDM 276
            +     CG  E  R+        +  R+     VS NA++N Y K G +  A  +F  M
Sbjct: 149 -ITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVS-NALLNMYKKCGSLSHAKRVFAKM 206

Query: 277 E-IRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKG 335
           E  R++I+W+ M   + L+G   EAL     ML+  +    + +V+ LSA +  A++  G
Sbjct: 207 ERTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDG 266

Query: 336 RWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK--KKVGHWTAMIVGLG 393
           R +HS I  +GF  + ++   ++ MY +CG++E A  VF A+ +  + V  W  M+    
Sbjct: 267 RLIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSAYV 326

Query: 394 MHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTI 453
            +     A+ L+    RM ++   +T++ +L+ACS A  V  GR     ++ND  +E  +
Sbjct: 327 HNDRGKDAIQLYQ---RMQLRADKVTYVSLLSACSSAEDVGLGRVLHKQIVNDE-LEKNV 382

Query: 454 EHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG 494
                LV +  + G   EA++  + M  R + + W +++S 
Sbjct: 383 IVGNALVSMYAKCGSHTEARAVFDKMEQR-SIISWTTIISA 422



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 121/254 (47%), Gaps = 2/254 (0%)

Query: 249 NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETML 308
           NL+  N +++ Y        A   FD +E R+L +W  ++A + ++G+  E L  LE M 
Sbjct: 78  NLILGNHIVSMYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMR 137

Query: 309 IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIE 368
              V P+  T ++AL +      L  G  +H  +V +   +D  +   L+ MY KCGS+ 
Sbjct: 138 QDGVRPDAVTFITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLS 197

Query: 369 SALTVFRAISK-KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNAC 427
            A  VF  + + + V  W+ M     +HG   +AL  F  M  +G+K T    + +L+AC
Sbjct: 198 HAKRVFAKMERTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSAC 257

Query: 428 SHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVI 487
           S   LV DG R  +  I   G E  +     ++ +  R G +EEA+   ++M      V+
Sbjct: 258 SSPALVQDG-RLIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVV 316

Query: 488 WMSLLSGARNHGNK 501
             +++  A  H ++
Sbjct: 317 SWNIMLSAYVHNDR 330


>gi|125557337|gb|EAZ02873.1| hypothetical protein OsI_25005 [Oryza sativa Indica Group]
          Length = 651

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 207/473 (43%), Positives = 302/473 (63%), Gaps = 2/473 (0%)

Query: 218 DLFSWTCLVDGFSKCGKVEIAREIFYRMPN-RNLVSWNAMINGYMKAGDVDSACELFDDM 276
           DLF    LV  +   G V   R +F  +P  R++++WN ++ GY++AG +  A E+FD+M
Sbjct: 180 DLFVRNALVHFYGVSGDVGAMRRVFDELPRVRDVLTWNEVLAGYVRAGMMTVAREVFDEM 239

Query: 277 EIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGR 336
            +RD I+W++++ GY        AL +   M+   V PN A +V+ALSA A L +L  G+
Sbjct: 240 PVRDEISWSTLVGGYVKEEELEVALGVFRNMVEQGVRPNQAAVVTALSAAARLGLLEHGK 299

Query: 337 WMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHG 396
           ++H+ + ++G  V   +G  L+ MY+KCG +  A  VF  + ++ V  W AMI GL  HG
Sbjct: 300 FVHNVVQRSGMPVCMNVGAALVDMYAKCGCVAVAREVFDGMRRRDVFAWNAMICGLAAHG 359

Query: 397 MATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHY 456
           +   A++LF +    G+ PT +TF+GVLN CS +GLV +GRRYF +++  Y IEP +EHY
Sbjct: 360 LGRDAVELFERFISEGLSPTNVTFVGVLNGCSRSGLVAEGRRYFKLIVEKYRIEPEMEHY 419

Query: 457 GCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAP 516
           GC+VD+L R G + EA   IE M + P+ V+W ++LS  + HG  D+G    N LI++ P
Sbjct: 420 GCMVDLLGRAGLVPEAIELIEGMHIAPDPVLWGTILSSCKTHGLVDLGVSVGNKLIELDP 479

Query: 517 DTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHP 576
              G YV+LS IYA A +WD+V EVR++M  RG  K  G S +E  G +H+F+VGD  H 
Sbjct: 480 THSGYYVLLSGIYAKANKWDEVREVRKLMSSRGTNKSAGWSLMEAHGKVHKFLVGDTYHK 539

Query: 577 QTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKS 636
            + +I+  L  +  +L  AG+VPD + VL  I  ++EK   ++ HSERLAIA+G I +++
Sbjct: 540 DSVQIYDTLDMINKRLTEAGYVPDVSSVLHDI-GEEEKVHAVKVHSERLAIAYGFIVLEA 598

Query: 637 RSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            SPIRIVKNLRVC DCH  +K+++ ++ REIIVRD SRFHH K G CSC D+W
Sbjct: 599 GSPIRIVKNLRVCGDCHEFSKMVTMVFQREIIVRDGSRFHHMKEGKCSCLDYW 651



 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 105/383 (27%), Positives = 173/383 (45%), Gaps = 77/383 (20%)

Query: 141 GKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD-KDLVSWNCLIDGYV 199
           G  +H L  K G   D FV ++LV  Y   G++   RRVFD +   +D+++WN ++ GYV
Sbjct: 165 GSHVHALAVKAGAAGDLFVRNALVHFYGVSGDVGAMRRVFDELPRVRDVLTWNEVLAGYV 224

Query: 200 KKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM------PNR----- 248
           + G + VA ++FDEMP RD  SW+ LV G+ K  ++E+A  +F  M      PN+     
Sbjct: 225 RAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVEQGVRPNQAAVVT 284

Query: 249 ------------------NLVSWN----------AMINGYMKAGDVDSACELFDDMEIRD 280
                             N+V  +          A+++ Y K G V  A E+FD M  RD
Sbjct: 285 ALSAAARLGLLEHGKFVHNVVQRSGMPVCMNVGAALVDMYAKCGCVAVAREVFDGMRRRD 344

Query: 281 LITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHS 340
           +  WN+MI G   +G   +A+EL E  +   + P + T V  L+  +             
Sbjct: 345 VFAWNAMICGLAAHGLGRDAVELFERFISEGLSPTNVTFVGVLNGCS------------- 391

Query: 341 YIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQ 400
              ++G V +G       + Y K       L V +   + ++ H+  M+  LG  G+  +
Sbjct: 392 ---RSGLVAEG-------RRYFK-------LIVEKYRIEPEMEHYGCMVDLLGRAGLVPE 434

Query: 401 ALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLV 460
           A++L      M + P  + +  +L++C   GLV+ G    N +I    ++PT   Y  L+
Sbjct: 435 AIELIEG---MHIAPDPVLWGTILSSCKTHGLVDLGVSVGNKLIE---LDPTHSGYYVLL 488

Query: 461 D-ILCRTGYLEEAKSTIESMPMR 482
             I  +    +E +   + M  R
Sbjct: 489 SGIYAKANKWDEVREVRKLMSSR 511



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 117/233 (50%), Gaps = 13/233 (5%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           AR +FD +      + ++ L+  YV  +    AL +F +++++ + P+   +   +  AA
Sbjct: 232 AREVFDEMPVRDE-ISWSTLVGGYVKEEELEVALGVFRNMVEQGVRPNQAAVVTALSAAA 290

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
           RLG ++ GK +H +V + G      V ++LV MYAK G + + R VFD M  +D+ +WN 
Sbjct: 291 RLGLLEHGKFVHNVVQRSGMPVCMNVGAALVDMYAKCGCVAVAREVFDGMRRRDVFAWNA 350

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIF------Y 243
           +I G    G    A++LF+      L     ++  +++G S+ G V   R  F      Y
Sbjct: 351 MICGLAAHGLGRDAVELFERFISEGLSPTNVTFVGVLNGCSRSGLVAEGRRYFKLIVEKY 410

Query: 244 RMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIR-DLITWNSMIAGYELNG 295
           R+    +  +  M++   +AG V  A EL + M I  D + W ++++  + +G
Sbjct: 411 RI-EPEMEHYGCMVDLLGRAGLVPEAIELIEGMHIAPDPVLWGTILSSCKTHG 462


>gi|302768267|ref|XP_002967553.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
 gi|300164291|gb|EFJ30900.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
          Length = 670

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 235/637 (36%), Positives = 358/637 (56%), Gaps = 50/637 (7%)

Query: 99  FNQRS--HEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFD 156
           F +R   H+++ L   L  R L  D      +I+      AI   +++H  +  L     
Sbjct: 38  FGERESLHKSIQL---LESRELELDPVGYAALIRRCGAANAISAARRLHSHILSLPHSNS 94

Query: 157 K--FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
           +  F+ + L+ MY K G +   R +F++M  +++ +W   +  +   G    A+  F  M
Sbjct: 95  QPPFLANLLIEMYGKCGRLPYARELFESMPSRNVHTWTVAMAAFSHNGCHSEALVFFRRM 154

Query: 215 ------PDRDLFS-----------------------------------WTCLVDGFSKCG 233
                 PDR  FS                                    T ++  + KCG
Sbjct: 155 YQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARISGLLPNVVVGTAVISMYGKCG 214

Query: 234 KVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYEL 293
           +++ AR  F  +  +N V+WNAM+  Y   G    A ELF +M   D + WN+MIA Y  
Sbjct: 215 RLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELFREMHDADSVCWNAMIAAYAQ 274

Query: 294 NGRFMEALELLETML-IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV 352
           +GR  +AL+L  +M    D+ P   T V+ +   A L+ L +GR +H+ +    F  + +
Sbjct: 275 HGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARVRATNFDANLL 334

Query: 353 LGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG 412
           +   L+ MY KCG ++ AL VF ++  K    W  +I     HG + QAL L+ +M   G
Sbjct: 335 VSNALVHMYGKCGCLDEALDVFHSMKLKDEISWNTIISSYAYHGHSDQALLLYQEMDLQG 394

Query: 413 MKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEA 472
           +KPT +TF+G+L+ACSH GLV DG  YF  M +D+ I+P++ H+GC++D+L R G L EA
Sbjct: 395 VKPTEVTFVGLLSACSHGGLVADGLDYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEA 454

Query: 473 KSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAA 532
           +  ++SMP++ N V WMSLL   + HG+   G  AA+ ++   P T G YV+LSNIYAAA
Sbjct: 455 ELVLKSMPIQANAVQWMSLLGACKTHGDLKRGVRAADQVVDRVPWTSGGYVLLSNIYAAA 514

Query: 533 GQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKL 592
           G+W  V ++R++M  RG +K PG S IE   V+HEFV GD SHPQ +EI+ +L +M  ++
Sbjct: 515 GRWKDVEKIRKIMAARGVKKSPGKSWIEIGDVVHEFVSGDSSHPQGEEIYVELGKMVEEM 574

Query: 593 KAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDC 652
           K  G+VPDT+ V   +E++++++  +  HSE+LAI +G + V  +S +RIVKNLRVC DC
Sbjct: 575 KGLGYVPDTSSVFHDLEEEEKEDLLV-CHSEKLAIVYGNMVVPGKSMLRIVKNLRVCLDC 633

Query: 653 HSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           H+ TK +S I  R+I+VRD +RFH F+NGSCSC+D+W
Sbjct: 634 HTATKFMSRITGRKIVVRDAARFHLFENGSCSCRDYW 670



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 100/419 (23%), Positives = 178/419 (42%), Gaps = 80/419 (19%)

Query: 71  LHYARSIFDRILQHPSLVLYNLLIKCYVFNQRS--HEALTLFCDLLDRFLLPDNFTLPCV 128
           L YAR +F+ +   PS  ++   +    F+      EAL  F  +      PD  T   +
Sbjct: 113 LPYARELFESM---PSRNVHTWTVAMAAFSHNGCHSEALVFFRRMYQSGERPDRVTFSVI 169

Query: 129 IKGAARLGA--IKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK 186
           +   A++GA  I +G++IH      G   +  V ++++SMY K G +D  R  F+ +  K
Sbjct: 170 LAAIAQMGAAAIDQGREIHRYARISGLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWK 229

Query: 187 DLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM- 245
           + V+WN ++  Y   G    A++LF EM D D   W  ++  +++ G+ + A +++  M 
Sbjct: 230 NSVTWNAMMTNYKLDGRDREALELFREMHDADSVCWNAMIAAYAQHGRGKQALDLYRSMH 289

Query: 246 ------PNR---------------------------------NLVSWNAMINGYMKAGDV 266
                 P +                                 NL+  NA+++ Y K G +
Sbjct: 290 DTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCL 349

Query: 267 DSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326
           D A ++F  M+++D I+WN++I+ Y  +G   +AL L + M +  V P + T V  LSA 
Sbjct: 350 DEALDVFHSMKLKDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSAC 409

Query: 327 AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWT 386
           +                  G V DG+     +Q   +               K  V H+ 
Sbjct: 410 S----------------HGGLVADGLDYFYRMQDDHRI--------------KPSVPHFG 439

Query: 387 AMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN 445
            +I  LG  G   +A  +      M ++  A+ ++ +L AC   G +  G R  + +++
Sbjct: 440 CIIDLLGRGGRLAEAELVLKS---MPIQANAVQWMSLLGACKTHGDLKRGVRAADQVVD 495



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 122/276 (44%), Gaps = 17/276 (6%)

Query: 88  VLYNLLIKCYVFNQRSHEALTLFCDLLDRF-LLPDNFTLPCVIKGAARLGAIKEGKQIHG 146
           V +N +I  Y  + R  +AL L+  + D   L P   T   VI   A L A+K+G+ IH 
Sbjct: 263 VCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHA 322

Query: 147 LVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEV 206
            V    F  +  V ++LV MY K G +D    VF +M  KD +SWN +I  Y   G  + 
Sbjct: 323 RVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKLKDEISWNTIISSYAYHGHSDQ 382

Query: 207 AMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS-----WNAMI 257
           A+ L+ EM  + +     ++  L+   S  G V    + FYRM + + +      +  +I
Sbjct: 383 ALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGLDYFYRMQDDHRIKPSVPHFGCII 442

Query: 258 NGYMKAGDVDSACELFDDMEIR-DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPND 316
           +   + G +  A  +   M I+ + + W S++   + +G     +   + ++  D +P  
Sbjct: 443 DLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGACKTHGDLKRGVRAADQVV--DRVPWT 500

Query: 317 ATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV 352
           +     LS +   A    GRW     ++      GV
Sbjct: 501 SGGYVLLSNIYAAA----GRWKDVEKIRKIMAARGV 532


>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
 gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
          Length = 605

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 239/609 (39%), Positives = 357/609 (58%), Gaps = 16/609 (2%)

Query: 93  LIKCYVFNQRSHEALTLFCDLL----DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLV 148
           +I  +V N    +++ +F D++     RF   D  T+  V+   A L  +K G QI  L 
Sbjct: 1   MISGFVKNSCFEDSIRVFGDMVLGNGPRF---DLTTVIAVLPAVAELQELKLGMQILCLA 57

Query: 149 FKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAM 208
            K GF     +L+ L+S+++K GE+++ R +F  +  KDL+S N +I G+   GE E ++
Sbjct: 58  IKCGFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSV 117

Query: 209 KLFDEM--PDRDLFSWTC--LVDGFSKCGKVEIAREIFYRMPNRNLVSWN----AMINGY 260
           +LF E+      + S T   L+  +S  G   +   I        +VS +    A+   Y
Sbjct: 118 RLFKELLSSGERVSSSTIVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTVY 177

Query: 261 MKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLV 320
            +  ++  A +LFD+   + L +WN+MI+G   NG    A+ L +TM   +V PN  T+ 
Sbjct: 178 CRLNEMIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVT 237

Query: 321 SALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKK 380
           S LSA A +  L+ G W+HS I  N F  +  + T LI MY+KCGSI  A  +F  + +K
Sbjct: 238 SILSACAQIGALSLGEWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELFDLMPEK 297

Query: 381 KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYF 440
               W AMI G G+HG   +AL LF  M    +KPT +TF+ VL ACSHAGLV +G   F
Sbjct: 298 NEVTWNAMISGYGLHGHGQEALKLFYDMLSSSVKPTGLTFLSVLYACSHAGLVKEGDGIF 357

Query: 441 NMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGN 500
           + M++D+G EP  EHY C+VDIL R G L++A   I++MP+ P   +W +LL     H +
Sbjct: 358 HTMVHDFGFEPLAEHYACMVDILGRAGQLKKALEFIKAMPVEPGPPVWGALLGACMIHKD 417

Query: 501 KDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIE 560
            ++   A+  L ++ P+ IG YV++SNIY+   ++ + + VR++ KK+   K PG + IE
Sbjct: 418 TNLAHVASEKLFELDPENIGYYVLMSNIYSVERKYPQAASVRQVAKKKRLAKTPGCTLIE 477

Query: 561 HRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELEN 620
              V H F  GD+SHPQ+  I+++L ++  K+  AG   +TT VL  +E++ EKE  ++ 
Sbjct: 478 IGQVPHVFTSGDQSHPQSKAIYAELDKLTGKMTEAGFQTETTTVLHDLEEE-EKELTMKV 536

Query: 621 HSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKN 680
           HSE+LAIAFGLI+ +  + IRI+KNLRVC DCH+ TK LS I  R I+VRD +RFHHFK+
Sbjct: 537 HSEKLAIAFGLISTEPGAEIRIIKNLRVCLDCHNWTKFLSKITKRVIVVRDANRFHHFKD 596

Query: 681 GSCSCKDFW 689
           G CSC D+W
Sbjct: 597 GLCSCGDYW 605



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 125/249 (50%), Gaps = 12/249 (4%)

Query: 40  LHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVF 99
           +H   VK  ++ HS +S+ L ++Y    +N + +AR +FD   +  +L  +N +I     
Sbjct: 154 IHGFCVKLGIVSHSSVSTALTTVYC--RLNEMIFARQLFDESAEK-TLASWNAMISGCTQ 210

Query: 100 NQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFV 159
           N  +  A++LF  +    + P+  T+  ++   A++GA+  G+ +H L+    F  + +V
Sbjct: 211 NGLTDAAISLFQTMQKNNVNPNPVTVTSILSACAQIGALSLGEWVHSLIKSNRFESNVYV 270

Query: 160 LSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL 219
            ++L+ MYAK G I + R +FD M +K+ V+WN +I GY   G  + A+KLF +M    +
Sbjct: 271 STALIDMYAKCGSITVARELFDLMPEKNEVTWNAMISGYGLHGHGQEALKLFYDMLSSSV 330

Query: 220 ----FSWTCLVDGFSKCGKVEIAREIFYRMPN----RNLVS-WNAMINGYMKAGDVDSAC 270
                ++  ++   S  G V+    IF+ M +      L   +  M++   +AG +  A 
Sbjct: 331 KPTGLTFLSVLYACSHAGLVKEGDGIFHTMVHDFGFEPLAEHYACMVDILGRAGQLKKAL 390

Query: 271 ELFDDMEIR 279
           E    M + 
Sbjct: 391 EFIKAMPVE 399


>gi|345505218|gb|AEN99833.1| chlororespiratory reduction 4 [Crucihimalaya wallichii]
          Length = 617

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 234/581 (40%), Positives = 330/581 (56%), Gaps = 45/581 (7%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRL-LSLYVDPHINNLHYARSIFDRIL---------QH 84
           ++  ++HA  V    I +  +++R+ L+         + +AR +F               
Sbjct: 28  EDVNKIHARLVTNGFIKNPNLTTRIVLAFAASRRPYXVEFARFVFHEYXIRSFSPGGGDX 87

Query: 85  PSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQI 144
               L+N +IK +        AL LFC +L+  +  D F+L  V+K  +RLG +KEG QI
Sbjct: 88  EDXYLWNAVIKSHSHGTDPRRALLLFCLMLENGVSVDKFSLSLVLKACSRLGLVKEGMQI 147

Query: 145 HGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGE- 203
           HG + K G   D F+ + L+ +Y K G +   R++FD M  +D VS+N +IDGYVK G  
Sbjct: 148 HGFLKKTGLWSDLFLQNCLIGLYLKCGWLGFARQIFDRMPQRDSVSYNSMIDGYVKCGST 207

Query: 204 ---------------------------------VEVAMKLFDEMPDRDLFSWTCLVDGFS 230
                                            V++A KLF EMPD+DL SW  ++DG+ 
Sbjct: 208 ESARELFDLMPEEMKNLISWNSMISGYAQTSDGVDIASKLFSEMPDKDLISWNSMIDGYV 267

Query: 231 KCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAG 290
           K G++E A+ +F  MP R++V+W+ MI+GY K G V  A  LFD M  RD++++NSMIAG
Sbjct: 268 KHGRIEDAKYLFDVMPRRDVVTWSTMIDGYAKLGFVHQAKTLFDQMPHRDVVSYNSMIAG 327

Query: 291 YELNGRFMEALELLETMLIGDVL-PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVV 349
           Y  N   MEALE+   M     L P++ TLV  LSA+A L  L+K   MH YIV+  F +
Sbjct: 328 YVQNRYNMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFFL 387

Query: 350 DGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMC 409
            G LG  LI MYSKCGSI+ A+ VF+ I  K + HW AMI GL +HG+   A D+  ++ 
Sbjct: 388 GGKLGVALIDMYSKCGSIQHAMLVFKGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIE 447

Query: 410 RMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYL 469
           R  +KP  ITF+G+LNACSH+GLV +G   F +M   + IEP ++HYGC+VDIL R+G +
Sbjct: 448 RRSIKPDDITFVGLLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSI 507

Query: 470 EEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIY 529
           E AK+ IE MP+ PN VIW + L+   +H   + GE  A +LI  A      YV+LSN+Y
Sbjct: 508 ELAKNLIEEMPIEPNDVIWRTFLAACNHHKEFETGELVAKHLIWEAGYNPSSYVLLSNLY 567

Query: 530 AAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVV 570
           A+ G+W  V  +R +MK+R   K PG S IE  G +HEF V
Sbjct: 568 ASFGKWKDVRRIRTIMKERKIEKVPGCSWIELDGRVHEFFV 608


>gi|326497609|dbj|BAK05894.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 676

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 244/680 (35%), Positives = 379/680 (55%), Gaps = 16/680 (2%)

Query: 20  PSRLHWNILKFSSTHKETQQLHAL-SVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIF 78
           P RL   +L   +  +   +LHAL  V ++   H  +SS L + Y      +L  A S  
Sbjct: 3   PRRLR-RLLSSCAALRTLTRLHALLIVSSSASCHHILSSCLATAYA--RAGDLAAAESTL 59

Query: 79  DRILQHPSLV-LYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGA 137
                 PS +  +N L+  +      HEAL +F   L     PD+ T    +   ARLG 
Sbjct: 60  ATAPTSPSSIPAWNALLAAHSRGASPHEALRVF-RALPPAARPDSTTFTLALSACARLGD 118

Query: 138 IKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDG 197
           +  G+ +       G+G D FV SS++++YAK G +D   +VFD M  +D V+W+ ++ G
Sbjct: 119 LATGEVVTDRASGAGYGNDIFVCSSVLNLYAKCGAMDDAVKVFDRMRKRDRVTWSTMVTG 178

Query: 198 YVKKGEVEVAMKLFDEMPDRDLFSWTCLVDG-FSKCGKVEIAR-------EIFYRMPNRN 249
           +V  G+   A++++  M    L +   ++ G    C     AR        +       +
Sbjct: 179 FVNAGQPVQAIEMYMRMRRDGLEADEVVIVGVMQACAATGDARMGASVHGYLLRHAMQMD 238

Query: 250 LVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLI 309
           +V   ++++ Y K G  D A  +F+ M  R+ ++W+++I+     G   EAL L   M +
Sbjct: 239 VVISTSLVDMYAKNGLFDQARRVFELMPHRNDVSWSALISQLAQYGNADEALGLFRMMQV 298

Query: 310 GDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIES 369
             + PN   +V AL A + L +L  G+ +H +I++    +D ++GT +I MYSKCGS+ S
Sbjct: 299 SGLHPNSGPVVGALLACSDLGLLKLGKSIHGFILRT-LELDRMVGTAVIDMYSKCGSLSS 357

Query: 370 ALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSH 429
           A  +F  +  + +  W  MI   G HG    AL LF +M R  ++P   TF  +L+A SH
Sbjct: 358 AQMLFDKVVSRDLISWNVMIACCGAHGRGRDALSLFQEMKRNEVRPDHATFASLLSALSH 417

Query: 430 AGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWM 489
           +GLV +G+ +FN M+N+YGIEP  +H  C+VD+L R+G +EEA   + S+  +P   I +
Sbjct: 418 SGLVEEGKFWFNCMVNEYGIEPGEKHLVCIVDLLARSGLVEEANGLVASLHSKPTISILV 477

Query: 490 SLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRG 549
           +LLSG  N+   ++GE  A  ++++ P  +G   ++SN+YAAA  W KV EVR++MK  G
Sbjct: 478 ALLSGCLNNNKLELGESTAEKILELQPGDVGVLALVSNLYAAAKNWYKVREVRKLMKDHG 537

Query: 550 FRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIE 609
            +K PG SSIE RG LH FV+ D+SHPQ  +I   + ++ ++++  G++P T  V   +E
Sbjct: 538 SKKAPGCSSIEIRGALHTFVMEDQSHPQHRQILQMVMKLDSEMRKMGYIPKTEFVYHDLE 597

Query: 610 DQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIV 669
            +  KE  L  HSERLA AFGL+N    + + ++KNLRVC DCH   K +S I +REI+V
Sbjct: 598 -EGVKEQLLSRHSERLATAFGLLNTSPGTRLVVIKNLRVCGDCHDAIKYMSKIADREIVV 656

Query: 670 RDNSRFHHFKNGSCSCKDFW 689
           RD  RFHHFK+G+CSC D+W
Sbjct: 657 RDAKRFHHFKDGACSCGDYW 676


>gi|359491264|ref|XP_002280276.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 684

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 252/659 (38%), Positives = 368/659 (55%), Gaps = 72/659 (10%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQ-HPSLVLYNLLIKC 96
           QQ+HA  V   L  ++ +++ L+  Y+     N   AR +FD      P + L+N++I+ 
Sbjct: 91  QQIHAQVVTQALSSNASLTASLIHCYLCA--KNHPNARILFDHYPSPSPPIKLWNVMIRT 148

Query: 97  YVFNQRSHEALTLFCDLL----DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLG 152
           Y   + S E + LF  +L       ++PD +T   VI   +         QI        
Sbjct: 149 YSKIRNSQEPIHLFLRMLTLDGPMQVVPDEYTFTFVITSCSH--------QI-------- 192

Query: 153 FGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFD 212
                    SL+     +GEI                     + G V K   E       
Sbjct: 193 ---------SLI-----YGEI---------------------VHGMVVKSGFE------- 210

Query: 213 EMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACEL 272
                +L+    +++  S   ++E AR++F +M  R++ SW +++ GY K G++D ACEL
Sbjct: 211 ----SNLYVGNSVINMCSVFARMEDARKVFNQMSERDVFSWTSLLGGYAKHGEMDRACEL 266

Query: 273 FDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGD-VLPNDATLVSALSAVAGLAV 331
           F+ M +R+ ++W  MI+G+   GR+ EAL     ML  D V PN+A LV  LSA A L  
Sbjct: 267 FNMMPVRNDVSWAVMISGFLGCGRYPEALTFFCNMLCDDRVNPNEAVLVCVLSACAHLGA 326

Query: 332 LNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVG 391
           L++G W+H YI K G      + T LI MY+KCG I+ A  VF  I K+ V  +T+MI G
Sbjct: 327 LDQGNWIHLYIDKIGIRQSSNISTALIDMYAKCGRIDCASRVFNGICKRDVLSFTSMISG 386

Query: 392 LGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP 451
           L  HG+   AL +F +M    + P  IT +GVLN CSH+GLV +G      M + +GI P
Sbjct: 387 LSYHGLGKDALRVFYQMLDENVMPNEITILGVLNGCSHSGLVEEGSSILANMESLWGIAP 446

Query: 452 TIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNL 511
            IEHYGC +D+L R GYLE A   +++MPM P+ VIW +LLS +R H N ++GE   +++
Sbjct: 447 KIEHYGCYIDLLGRAGYLERALEVVKTMPMEPDIVIWRALLSASRIHHNVNLGEQIISHI 506

Query: 512 IKV-APDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVV 570
            ++ + D  G  V+LSN+YA+ G+W++V+E+R++M  R     PG S IE  G++HEF V
Sbjct: 507 GQLKSSDHNGGEVLLSNLYASLGRWERVTEMRKLMVDRRSESSPGCSWIEVNGLVHEFRV 566

Query: 571 GDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFG 630
            D+ HPQ  EI +KL+E+  +L   G+  +T QV   + +++EKE  +  HSE+LAIAFG
Sbjct: 567 ADQLHPQIVEIRNKLNEILKRLSQIGYSANTMQVSFDL-NEEEKEQAVAWHSEKLAIAFG 625

Query: 631 LINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           L++ +  + IRIVKNLR C DCHS  K +S +Y REI+VRD SRFH F  G CSCKDFW
Sbjct: 626 LMSTEPGTLIRIVKNLRTCEDCHSALKTISQVYGREIVVRDRSRFHTFIEGDCSCKDFW 684


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 230/635 (36%), Positives = 368/635 (57%), Gaps = 20/635 (3%)

Query: 71  LHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIK 130
           +H A  +FD+I Q P LV +N LI  Y     +  AL+LF ++ +  L+ D FT   VI 
Sbjct: 90  IHVAHHLFDQIPQ-PDLVSFNTLINAYADRGDTLSALSLFGEMREMGLVMDGFTFSGVIT 148

Query: 131 GAA-RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD--KD 187
                +G I+   Q+H L F  GF     V +SL++ Y+K G ++    VF+ M +  +D
Sbjct: 149 ACCNHVGLIR---QLHSLAFSSGFDSYVSVKNSLLTYYSKNGILEEAEMVFNGMGEEVRD 205

Query: 188 LVSWNCLIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFS----KCGKVEIAR 239
            VSWN +I  Y +      A+ L+ +M  R    D+F+   ++  FS      G ++   
Sbjct: 206 EVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLTTFSCVEDLSGGLQFHA 265

Query: 240 EIFYRMPNRNLVSWNAMINGYMKAG-DVDSACELFDDMEIRDLITWNSMIAGYELNGRF- 297
           +      N+N    + +I+ Y K G  +  + ++F+++   DL+ WN+MI+GY  N    
Sbjct: 266 KAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSDLVVWNTMISGYSQNKELS 325

Query: 298 MEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV-LGTL 356
           +EALE    M      P+D + V A+SA + L+  ++G+  H+  +K+    + + +   
Sbjct: 326 VEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQGKQFHALAMKSEIPSNQISVNNA 385

Query: 357 LIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT 416
           L+ MYSKCG+++ A  +F+ + +       ++I G   HG+ T++L+LF +M    + PT
Sbjct: 386 LVTMYSKCGNLQDARKLFQRMPQHNTVTLNSIIAGYAQHGIGTESLNLFEQMLAASIAPT 445

Query: 417 AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTI 476
           +IT + +L+AC+H G V +G++YFNMM + +GIEP  EHY C++D+L R G L EA+  I
Sbjct: 446 SITLVSILSACAHTGRVEEGKKYFNMMKDIFGIEPEAEHYSCMIDLLGRAGKLSEAERLI 505

Query: 477 ESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWD 536
           ++MP  P    W +LL   R +GN ++ E AAN  +++ P     Y++L+++Y+AA +W+
Sbjct: 506 DTMPFSPGSAAWAALLGACRKYGNMELAEKAANQFLQLEPTNAVPYIMLASMYSAARKWE 565

Query: 537 KVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAG 596
           + + +R++M+ RG RK PG S IE    +H FV  D SHP+  EIH  L EM  K+K AG
Sbjct: 566 EAARIRKLMRDRGIRKKPGCSWIELNKRVHVFVAEDNSHPRIKEIHMYLDEMFVKMKRAG 625

Query: 597 HVPDTTQVLLCIED--QKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHS 654
           +VPD     +  ++  ++EKE  L +HSE+LA+AFGL+  K   P+ +VKNLR+C DCH+
Sbjct: 626 YVPDVRWAFVKDDETGEQEKEIMLAHHSEKLAVAFGLLFTKHGEPLLVVKNLRICGDCHN 685

Query: 655 VTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
             K +S I  R+I VRD  RFH F++G CSC D+W
Sbjct: 686 AIKFMSAIARRKITVRDAYRFHCFEDGRCSCGDYW 720



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 112/449 (24%), Positives = 203/449 (45%), Gaps = 45/449 (10%)

Query: 141 GKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVK 200
           GK +H +  K       ++ +  + +Y+K   +      F+   + ++ S+N LI  Y K
Sbjct: 27  GKSLHTIYLKSLIPSSTYLSNHFILLYSKCNLLTTAHHAFNQTHEPNVFSFNALIAAYAK 86

Query: 201 KGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLV--------- 251
           +  + VA  LFD++P  DL S+  L++ ++  G    A  +F  M    LV         
Sbjct: 87  ESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFGEMREMGLVMDGFTFSGV 146

Query: 252 ------------------------SW----NAMINGYMKAGDVDSACELFDDM--EIRDL 281
                                   S+    N+++  Y K G ++ A  +F+ M  E+RD 
Sbjct: 147 ITACCNHVGLIRQLHSLAFSSGFDSYVSVKNSLLTYYSKNGILEEAEMVFNGMGEEVRDE 206

Query: 282 ITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSY 341
           ++WNSMI  Y  + R ++AL L   M+      +  TL S L+  + +  L+ G   H+ 
Sbjct: 207 VSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLTTFSCVEDLSGGLQFHAK 266

Query: 342 IVKNGFVVDGVLGTLLIQMYSKCGS-IESALTVFRAISKKKVGHWTAMIVGLGMHG-MAT 399
            +K GF  +  +G+ LI MY+KCG+ +  +  VF  I    +  W  MI G   +  ++ 
Sbjct: 267 AIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSDLVVWNTMISGYSQNKELSV 326

Query: 400 QALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCL 459
           +AL+ F +M R G  P   +F+  ++ACS+    + G+++  + +        I     L
Sbjct: 327 EALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQGKQFHALAMKSEIPSNQISVNNAL 386

Query: 460 VDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNH--GNKDIGEYAANNLIKVAPD 517
           V +  + G L++A+   + MP + N V   S+++G   H  G + +  +       +AP 
Sbjct: 387 VTMYSKCGNLQDARKLFQRMP-QHNTVTLNSIIAGYAQHGIGTESLNLFEQMLAASIAPT 445

Query: 518 TIGCYVVLSNIYAAAGQWDKVSEVREMMK 546
           +I    +LS   A  G+ ++  +   MMK
Sbjct: 446 SITLVSILSAC-AHTGRVEEGKKYFNMMK 473



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 117/249 (46%), Gaps = 13/249 (5%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYV 98
           Q HA ++KT    +  + S L+ +Y       +  +R +F+ I     LV++N +I  Y 
Sbjct: 262 QFHAKAIKTGFNKNRHVGSGLIDMYAKCGA-GMSESRKVFEEICG-SDLVVWNTMISGYS 319

Query: 99  FNQR-SHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
            N+  S EAL  F  +      PD+ +  C I   + L +  +GKQ H L  K     ++
Sbjct: 320 QNKELSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQGKQFHALAMKSEIPSNQ 379

Query: 158 F-VLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD 216
             V ++LV+MY+K G +   R++F  M   + V+ N +I GY + G    ++ LF++M  
Sbjct: 380 ISVNNALVTMYSKCGNLQDARKLFQRMPQHNTVTLNSIIAGYAQHGIGTESLNLFEQMLA 439

Query: 217 RDLFSWT-CLVDGFSKC---GKVEIAREIFYRMPN-----RNLVSWNAMINGYMKAGDVD 267
             +   +  LV   S C   G+VE  ++ F  M +          ++ MI+   +AG + 
Sbjct: 440 ASIAPTSITLVSILSACAHTGRVEEGKKYFNMMKDIFGIEPEAEHYSCMIDLLGRAGKLS 499

Query: 268 SACELFDDM 276
            A  L D M
Sbjct: 500 EAERLIDTM 508



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 107/226 (47%), Gaps = 11/226 (4%)

Query: 32  STHKETQQLHALSVKTNLIYHS-GISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLY 90
           S+  + +Q HAL++K+ +  +   +++ L+++Y      NL  AR +F R+ QH ++ L 
Sbjct: 358 SSPSQGKQFHALAMKSEIPSNQISVNNALVTMY--SKCGNLQDARKLFQRMPQHNTVTL- 414

Query: 91  NLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFK 150
           N +I  Y  +    E+L LF  +L   + P + TL  ++   A  G ++EGK+   ++  
Sbjct: 415 NSIIAGYAQHGIGTESLNLFEQMLAASIAPTSITLVSILSACAHTGRVEEGKKYFNMMKD 474

Query: 151 LGFGFDKFV--LSSLVSMYAKFGEIDLGRRVFDAMD-DKDLVSWNCLIDGYVKKGEVEVA 207
           + FG +      S ++ +  + G++    R+ D M       +W  L+    K G +E+A
Sbjct: 475 I-FGIEPEAEHYSCMIDLLGRAGKLSEAERLIDTMPFSPGSAAWAALLGACRKYGNMELA 533

Query: 208 MKL---FDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNL 250
            K    F ++   +   +  L   +S   K E A  I   M +R +
Sbjct: 534 EKAANQFLQLEPTNAVPYIMLASMYSAARKWEEAARIRKLMRDRGI 579


>gi|414884091|tpg|DAA60105.1| TPA: hypothetical protein ZEAMMB73_697281 [Zea mays]
          Length = 734

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 237/664 (35%), Positives = 358/664 (53%), Gaps = 46/664 (6%)

Query: 70  NLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDR--FLLPDNFTLPC 127
            LH A  +FD      SL  +  +I       R  + +  F ++LD      P+ F L  
Sbjct: 73  GLHNAHRVFDGTPTR-SLPAWTSIISGCAREGRHADGMRAFAEMLDECGATAPNAFVLAG 131

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD 187
           V++  A LG ++ G++IHG + + G   D  + ++++ MYAK G+    RR F AM  KD
Sbjct: 132 VLRCCAGLGDVESGRRIHGWILRSGVCPDVVLCNAVLDMYAKCGDHGRARRAFGAMAQKD 191

Query: 188 LVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIA--------- 238
             SWN +I   ++ G++  A +LFDE   RD+ SW  +V G  + G    A         
Sbjct: 192 ATSWNIVIRACLQDGDLVGATQLFDESSLRDVSSWNTIVSGLMRHGHTTEALGRLQQMVR 251

Query: 239 ----------------------REIFYRMPNRNLVS--------WNAMINGYMKAGDVDS 268
                                 R++  ++  R +V+          ++++ Y K G+++S
Sbjct: 252 AGVTFSNYTYSMVFALAGLLSSRDLGRQLHGRVVVAVLEEDAFVGCSLMDMYCKCGEMES 311

Query: 269 ACELFD---DMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSA 325
           A  +FD   D        W++M+AGY  NGR  EALE    ML   V      L S  SA
Sbjct: 312 ALSIFDRWSDFTEDRQFAWSTMVAGYVQNGREEEALEFFRRMLREGVPAGQFILTSVASA 371

Query: 326 VAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHW 385
            A   ++ +GR +H ++ K G   D  L + ++ MYSK GS+E A  +FR+   K V  W
Sbjct: 372 CANAGMVEQGRQVHGFVEKLGHRFDAPLASAIVDMYSKSGSLEDACRIFRSAQTKNVALW 431

Query: 386 TAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN 445
           T M+     HG    AL++F++M    + P  IT + VL+ACSH+GLV+DG  YFN+M  
Sbjct: 432 TTMLCSYASHGQGRMALEIFSRMKAEKIMPNEITLVAVLSACSHSGLVSDGYHYFNLMQE 491

Query: 446 DYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGE 505
           +YGI P  EHY C+VD+  R G L++AK+ IE   +    V+W +LLS  R H + +  +
Sbjct: 492 EYGIVPNTEHYNCMVDLYGRAGLLDKAKNFIEENKISHEAVVWKTLLSACRLHKHIEYAQ 551

Query: 506 YAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVL 565
            A+  L+++     G YV++SN+YA   +W    ++R  MK+R  RK PG S I  + V+
Sbjct: 552 LASEKLVQLEQYDAGSYVLMSNMYATNNKWLDTFKLRSSMKERRVRKQPGQSWIHLKNVV 611

Query: 566 HEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERL 625
           H FV  D SHP++ EI++ L ++  +LK  G+   T  V+  IE++ ++E  L+ HSE+L
Sbjct: 612 HRFVALDTSHPRSAEIYAYLEKLMERLKEMGYTSRTDLVVHDIEEE-QRETSLKFHSEKL 670

Query: 626 AIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSC 685
           AIAFG+I+    + +RI KNLRVC DCH   K ++   +REI+VRD  RFHHFK+G CSC
Sbjct: 671 AIAFGIISTPVGTALRIFKNLRVCEDCHEAIKFITRATDREIVVRDLYRFHHFKDGQCSC 730

Query: 686 KDFW 689
           +DFW
Sbjct: 731 EDFW 734



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 131/284 (46%), Gaps = 15/284 (5%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRI--LQHPSLVLYNLLIK 95
           +QLH   V   L   + +   L+ +Y       +  A SIFDR           ++ ++ 
Sbjct: 278 RQLHGRVVVAVLEEDAFVGCSLMDMYCK--CGEMESALSIFDRWSDFTEDRQFAWSTMVA 335

Query: 96  CYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF 155
            YV N R  EAL  F  +L   +    F L  V    A  G +++G+Q+HG V KLG  F
Sbjct: 336 GYVQNGREEEALEFFRRMLREGVPAGQFILTSVASACANAGMVEQGRQVHGFVEKLGHRF 395

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM- 214
           D  + S++V MY+K G ++   R+F +   K++  W  ++  Y   G+  +A+++F  M 
Sbjct: 396 DAPLASAIVDMYSKSGSLEDACRIFRSAQTKNVALWTTMLCSYASHGQGRMALEIFSRMK 455

Query: 215 PDRDLFSWTCLVDGFSKC---GKVEIAREIFYRMPNR-----NLVSWNAMINGYMKAGDV 266
            ++ + +   LV   S C   G V      F  M        N   +N M++ Y +AG +
Sbjct: 456 AEKIMPNEITLVAVLSACSHSGLVSDGYHYFNLMQEEYGIVPNTEHYNCMVDLYGRAGLL 515

Query: 267 DSACELFDDMEI-RDLITWNSMIAGYELNGRFMEALELLETMLI 309
           D A    ++ +I  + + W ++++   L+ + +E  +L    L+
Sbjct: 516 DKAKNFIEENKISHEAVVWKTLLSACRLH-KHIEYAQLASEKLV 558



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 90/363 (24%), Positives = 153/363 (42%), Gaps = 51/363 (14%)

Query: 238 AREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRF 297
           A++  +R   R  V  +++I     A  + +A  +FD    R L  W S+I+G    GR 
Sbjct: 51  AKKAIHRQSVRGCVPSSSVI-----ARGLHNAHRVFDGTPTRSLPAWTSIISGCAREGRH 105

Query: 298 MEALELLETML--IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGT 355
            + +     ML   G   PN   L   L   AGL  +  GR +H +I+++G   D VL  
Sbjct: 106 ADGMRAFAEMLDECGATAPNAFVLAGVLRCCAGLGDVESGRRIHGWILRSGVCPDVVLCN 165

Query: 356 LLIQMYSKCGSIESALTVFRAISKK-------------------------------KVGH 384
            ++ MY+KCG    A   F A+++K                                V  
Sbjct: 166 AVLDMYAKCGDHGRARRAFGAMAQKDATSWNIVIRACLQDGDLVGATQLFDESSLRDVSS 225

Query: 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMI 444
           W  ++ GL  HG  T+AL    +M R G+  +  T+  V    + AGL++   R     +
Sbjct: 226 WNTIVSGLMRHGHTTEALGRLQQMVRAGVTFSNYTYSMVF---ALAGLLSS--RDLGRQL 280

Query: 445 NDYGIEPTIEH---YGC-LVDILCRTGYLEEAKSTIE--SMPMRPNFVIWMSLLSGARNH 498
           +   +   +E     GC L+D+ C+ G +E A S  +  S         W ++++G   +
Sbjct: 281 HGRVVVAVLEEDAFVGCSLMDMYCKCGEMESALSIFDRWSDFTEDRQFAWSTMVAGYVQN 340

Query: 499 GNKDIG-EYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKD-PGS 556
           G ++   E+    L +  P        +++  A AG  ++  +V   ++K G R D P +
Sbjct: 341 GREEEALEFFRRMLREGVPAGQFILTSVASACANAGMVEQGRQVHGFVEKLGHRFDAPLA 400

Query: 557 SSI 559
           S+I
Sbjct: 401 SAI 403


>gi|449441542|ref|XP_004138541.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 652

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 227/602 (37%), Positives = 346/602 (57%), Gaps = 9/602 (1%)

Query: 5   TLQHSSPIHALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYV 64
           TL    P   L++H  S     +L+   T    Q++ A  +     Y+  ++  +++ +V
Sbjct: 56  TLTQKHPRWVLEEHFIS-----LLRSCKTVALLQKVQAQIITHGFQYNGYVAPNVVTSWV 110

Query: 65  DPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFT 124
              +  + +AR +FD     P + L+N + + Y  N    E + LF  +    + P+ FT
Sbjct: 111 G--LKQMAHARHLFDH-FPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFT 167

Query: 125 LPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD 184
            P V+K  A++GA  EG++IH  V K G   ++FV ++L+ +Y+    I    ++F  M 
Sbjct: 168 FPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGML 227

Query: 185 DKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYR 244
           ++++V+W  +I GY+    V +A +LFD  P+RD+  W  +V G+ + G ++ AR++F  
Sbjct: 228 ERNIVAWTSMISGYILCNRVALARRLFDLAPERDVVLWNIMVSGYIEIGDMKAARKLFDT 287

Query: 245 MPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELL 304
           MP R+ +SWN M+NGY   GDV++  +LF++M  R++ +WN +I GY  NG F E L   
Sbjct: 288 MPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCF 347

Query: 305 ETMLI-GDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSK 363
           + MLI G V+PNDATLV+ LSA A L  L+ G+W+H Y    GF     +G  LI MYSK
Sbjct: 348 KRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYSK 407

Query: 364 CGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGV 423
           CG IE+A+ VF ++  K +  W +MI GL  HG    AL LF++M   G KP  ITFIGV
Sbjct: 408 CGLIENAMEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITFIGV 467

Query: 424 LNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRP 483
           L +C+H GLV +G  YFN M+N+Y I P IEHYGC+VD+  R G L+ A   ++ MPM  
Sbjct: 468 LCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEA 527

Query: 484 NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVRE 543
           + VIW +LL   R + N D+ E A   LI + P     YV+LSNIY   G+W  V+ ++ 
Sbjct: 528 DAVIWAALLGACRIYKNIDLAELALQKLIVLEPKNPANYVLLSNIYGDLGRWKDVARLKI 587

Query: 544 MMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQ 603
           +M+  G +K PG S IE    + EF   D+ H Q+ EI+  L  +   L++ G+ P+  +
Sbjct: 588 LMRDTGSKKLPGCSLIEVNDSVVEFYSLDERHSQSKEIYGVLKGLMKLLRSFGYEPNMME 647

Query: 604 VL 605
           +L
Sbjct: 648 LL 649


>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
 gi|223942207|gb|ACN25187.1| unknown [Zea mays]
 gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 885

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 232/673 (34%), Positives = 377/673 (56%), Gaps = 59/673 (8%)

Query: 59  LLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFL 118
           +L+ YV  +   + +A  +FD + +   +V +N+++     + R  EAL +  D+  + +
Sbjct: 230 MLAGYVKTY--GVDHALELFDSMPER-DVVSWNMMVSALSQSGRVREALDMVVDMQSKGV 286

Query: 119 LPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRR 178
             D+ T    +   ARL +++ GKQ+H  V +     D +V S+LV +YAK G     + 
Sbjct: 287 RLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKG 346

Query: 179 VFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDG------ 228
           VF+++ D++ V+W  LI G+++ G    +++LF++M       D F+   L+ G      
Sbjct: 347 VFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMD 406

Query: 229 -----------------------------FSKCGKVEIAREIFYRMPNRNLVSWNAMING 259
                                        ++KC  ++ A  IF  M  +++VSW +MI  
Sbjct: 407 LCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITA 466

Query: 260 YMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGD-VLPNDAT 318
           Y + G+V  A E FD M  +++ITWN+M+  Y  +G   + L + + ML  + V P+  T
Sbjct: 467 YSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVT 526

Query: 319 LVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS 378
            V+     A L     G  +    VK G ++D  +   +I MYSKCG I  A  VF  ++
Sbjct: 527 YVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLN 586

Query: 379 KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR 438
            K +  W AMI G   HGM  QA+++F+ + + G KP  I+++ VL+ CSH+GLV +G+ 
Sbjct: 587 VKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKF 646

Query: 439 YFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNH 498
           YF+MM   + I P +EH+ C+VD+L R G+L EAK  I+ MPM+P   +W +LLS  + H
Sbjct: 647 YFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIH 706

Query: 499 GNKDIGEYAANNLIKV-APDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSS 557
           GN ++ E AA ++ ++ +PD+ G Y++++ IYA AG+ D  +++R++M+ +G +K+PG S
Sbjct: 707 GNNELAELAAKHVFELDSPDS-GSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYS 765

Query: 558 SIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHV-PDTTQVLLCIEDQKEKEA 616
            +E    +H F   D SHPQ   I  KL E+  K+   G+V  D+T+            +
Sbjct: 766 WMEVDNKVHVFKADDVSHPQVLAIRKKLDELMEKIARLGYVRTDSTR------------S 813

Query: 617 ELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFH 676
           E+ +HSE+LA+AFGL+ + +  PI I+KNLR+C DCH+V KL+S +  RE ++RD  RFH
Sbjct: 814 EI-HHSEKLAVAFGLMTLPTWMPIHIMKNLRICGDCHTVIKLISTVTGREFVIRDAVRFH 872

Query: 677 HFKNGSCSCKDFW 689
           HF  GSCSC D+W
Sbjct: 873 HFNGGSCSCGDYW 885



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/376 (25%), Positives = 175/376 (46%), Gaps = 46/376 (12%)

Query: 167 YAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLF-------DEMPDRDL 219
           YAK G +     +F  M  +D+ SWN L+ GY +  +  V+++ F       D  P+   
Sbjct: 101 YAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNA-- 158

Query: 220 FSWTC-----------------------------------LVDGFSKCGKVEIAREIFYR 244
           F+  C                                   LVD F +CG V++A  +F R
Sbjct: 159 FTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVR 218

Query: 245 MPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELL 304
           +    +   N+M+ GY+K   VD A ELFD M  RD+++WN M++    +GR  EAL+++
Sbjct: 219 IKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMV 278

Query: 305 ETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKC 364
             M    V  +  T  S+L+A A L+ L  G+ +H+ +++N   +D  + + L+++Y+K 
Sbjct: 279 VDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKS 338

Query: 365 GSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVL 424
           G  + A  VF ++  +    WT +I G   +G  T++++LFN+M    M         ++
Sbjct: 339 GCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLI 398

Query: 425 NACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPN 484
           + C     +  GR+  ++ +    I+  +     L+ +  +   L+ A++    M  + +
Sbjct: 399 SGCCSRMDLCLGRQLHSLCLKSGQIQAVVVS-NSLISMYAKCDNLQSAEAIFRFMNEK-D 456

Query: 485 FVIWMSLLSGARNHGN 500
            V W S+++     GN
Sbjct: 457 IVSWTSMITAYSQVGN 472



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 148/298 (49%), Gaps = 41/298 (13%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVD-----------------------------PHI 68
           +QLH+L +K+  I    +S+ L+S+Y                                 +
Sbjct: 411 RQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQV 470

Query: 69  NNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL-DRFLLPDNFTLPC 127
            N+  AR  FD  +   +++ +N ++  Y+ +    + L ++  +L + ++ PD  T   
Sbjct: 471 GNVAKAREFFDG-MSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVT 529

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD 187
           + KG A LGA K G QI G   K+G   D  V +++++MY+K G I   R+VFD ++ KD
Sbjct: 530 LFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKD 589

Query: 188 LVSWNCLIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREIFY 243
           +VSWN +I GY + G  + A+++FD++  R    D  S+  ++ G S  G V+  +  F 
Sbjct: 590 IVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFD 649

Query: 244 RMPNRNLVS-----WNAMINGYMKAGDVDSACELFDDMEIRDLI-TWNSMIAGYELNG 295
            M   + +S     ++ M++   +AG +  A +L DDM ++     W ++++  +++G
Sbjct: 650 MMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHG 707


>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 865

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 232/673 (34%), Positives = 377/673 (56%), Gaps = 59/673 (8%)

Query: 59  LLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFL 118
           +L+ YV  +   + +A  +FD + +   +V +N+++     + R  EAL +  D+  + +
Sbjct: 210 MLAGYVKTY--GVDHALELFDSMPER-DVVSWNMMVSALSQSGRVREALDMVVDMQSKGV 266

Query: 119 LPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRR 178
             D+ T    +   ARL +++ GKQ+H  V +     D +V S+LV +YAK G     + 
Sbjct: 267 RLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKG 326

Query: 179 VFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDG------ 228
           VF+++ D++ V+W  LI G+++ G    +++LF++M       D F+   L+ G      
Sbjct: 327 VFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMD 386

Query: 229 -----------------------------FSKCGKVEIAREIFYRMPNRNLVSWNAMING 259
                                        ++KC  ++ A  IF  M  +++VSW +MI  
Sbjct: 387 LCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITA 446

Query: 260 YMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGD-VLPNDAT 318
           Y + G+V  A E FD M  +++ITWN+M+  Y  +G   + L + + ML  + V P+  T
Sbjct: 447 YSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVT 506

Query: 319 LVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS 378
            V+     A L     G  +    VK G ++D  +   +I MYSKCG I  A  VF  ++
Sbjct: 507 YVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLN 566

Query: 379 KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR 438
            K +  W AMI G   HGM  QA+++F+ + + G KP  I+++ VL+ CSH+GLV +G+ 
Sbjct: 567 VKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKF 626

Query: 439 YFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNH 498
           YF+MM   + I P +EH+ C+VD+L R G+L EAK  I+ MPM+P   +W +LLS  + H
Sbjct: 627 YFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIH 686

Query: 499 GNKDIGEYAANNLIKV-APDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSS 557
           GN ++ E AA ++ ++ +PD+ G Y++++ IYA AG+ D  +++R++M+ +G +K+PG S
Sbjct: 687 GNNELAELAAKHVFELDSPDS-GSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYS 745

Query: 558 SIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHV-PDTTQVLLCIEDQKEKEA 616
            +E    +H F   D SHPQ   I  KL E+  K+   G+V  D+T+            +
Sbjct: 746 WMEVDNKVHVFKADDVSHPQVLAIRKKLDELMEKIARLGYVRTDSTR------------S 793

Query: 617 ELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFH 676
           E+ +HSE+LA+AFGL+ + +  PI I+KNLR+C DCH+V KL+S +  RE ++RD  RFH
Sbjct: 794 EI-HHSEKLAVAFGLMTLPTWMPIHIMKNLRICGDCHTVIKLISTVTGREFVIRDAVRFH 852

Query: 677 HFKNGSCSCKDFW 689
           HF  GSCSC D+W
Sbjct: 853 HFNGGSCSCGDYW 865



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/376 (25%), Positives = 175/376 (46%), Gaps = 46/376 (12%)

Query: 167 YAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLF-------DEMPDRDL 219
           YAK G +     +F  M  +D+ SWN L+ GY +  +  V+++ F       D  P+   
Sbjct: 81  YAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNA-- 138

Query: 220 FSWTC-----------------------------------LVDGFSKCGKVEIAREIFYR 244
           F+  C                                   LVD F +CG V++A  +F R
Sbjct: 139 FTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVR 198

Query: 245 MPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELL 304
           +    +   N+M+ GY+K   VD A ELFD M  RD+++WN M++    +GR  EAL+++
Sbjct: 199 IKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMV 258

Query: 305 ETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKC 364
             M    V  +  T  S+L+A A L+ L  G+ +H+ +++N   +D  + + L+++Y+K 
Sbjct: 259 VDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKS 318

Query: 365 GSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVL 424
           G  + A  VF ++  +    WT +I G   +G  T++++LFN+M    M         ++
Sbjct: 319 GCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLI 378

Query: 425 NACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPN 484
           + C     +  GR+  ++ +    I+  +     L+ +  +   L+ A++    M  + +
Sbjct: 379 SGCCSRMDLCLGRQLHSLCLKSGQIQAVVVS-NSLISMYAKCDNLQSAEAIFRFMNEK-D 436

Query: 485 FVIWMSLLSGARNHGN 500
            V W S+++     GN
Sbjct: 437 IVSWTSMITAYSQVGN 452



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 148/298 (49%), Gaps = 41/298 (13%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVD-----------------------------PHI 68
           +QLH+L +K+  I    +S+ L+S+Y                                 +
Sbjct: 391 RQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQV 450

Query: 69  NNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL-DRFLLPDNFTLPC 127
            N+  AR  FD  +   +++ +N ++  Y+ +    + L ++  +L + ++ PD  T   
Sbjct: 451 GNVAKAREFFDG-MSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVT 509

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD 187
           + KG A LGA K G QI G   K+G   D  V +++++MY+K G I   R+VFD ++ KD
Sbjct: 510 LFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKD 569

Query: 188 LVSWNCLIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREIFY 243
           +VSWN +I GY + G  + A+++FD++  R    D  S+  ++ G S  G V+  +  F 
Sbjct: 570 IVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFD 629

Query: 244 RMPNRNLVS-----WNAMINGYMKAGDVDSACELFDDMEIRDLI-TWNSMIAGYELNG 295
            M   + +S     ++ M++   +AG +  A +L DDM ++     W ++++  +++G
Sbjct: 630 MMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHG 687


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein At2g39620-like
            [Vitis vinifera]
          Length = 1005

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 235/629 (37%), Positives = 349/629 (55%), Gaps = 34/629 (5%)

Query: 82   LQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEG 141
            LQ   LV ++ +I   V      EAL+LF ++ ++ + P+  TL  ++   A L  +K G
Sbjct: 390  LQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLG 449

Query: 142  KQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKK 201
            K IH    K     D    ++LVSMYAK G        F+ M  +D+V+WN LI+GY + 
Sbjct: 450  KSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQI 509

Query: 202  GEVEVAMKLFDEM------PD--------------RDLFSWTCLVDGFSKCGKVEIAREI 241
            G+   A+ +F ++      PD               DL   TC+     K G        
Sbjct: 510  GDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGF------- 562

Query: 242  FYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEI-RDLITWNSMIAGYELNGRFMEA 300
                   +    NA+I+ Y K G + SA  LF+  +  +D +TWN +IA Y  NG   EA
Sbjct: 563  -----ESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEA 617

Query: 301  LELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQM 360
            +     M + +  PN  T VS L A A LA   +G   H+ I++ GF+ + ++G  LI M
Sbjct: 618  ISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDM 677

Query: 361  YSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITF 420
            Y+KCG ++ +  +F  +  K    W AM+ G  +HG   +A+ LF+ M    ++  +++F
Sbjct: 678  YAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSF 737

Query: 421  IGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP 480
            + VL+AC HAGLV +GR+ F+ M + Y I+P +EHY C+VD+L R G  +E    I+ MP
Sbjct: 738  VSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMP 797

Query: 481  MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSE 540
            + P+  +W +LL   R H N  +GE A ++L+K+ P     +VVLS+IYA +G+W    +
Sbjct: 798  VEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGK 857

Query: 541  VREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPD 600
             R  M   G +K PG S +E +  +H F VGDKSHPQ + +H   + +  K++  G+VPD
Sbjct: 858  ARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIGYVPD 917

Query: 601  TTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLS 660
             + VL  +E++ +KE  L +HSERLAI F L+N    S I+IVKNLRVC DCH+ TK +S
Sbjct: 918  RSCVLQNVEEE-DKEMFLYSHSERLAITFALLNTPPGSTIQIVKNLRVCADCHTTTKFIS 976

Query: 661  GIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
             I  R IIVRD +RFHHF++G CSC D+W
Sbjct: 977  KITTRRIIVRDATRFHHFEDGICSCNDYW 1005



 Score =  231 bits (590), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 164/540 (30%), Positives = 267/540 (49%), Gaps = 16/540 (2%)

Query: 23  LHWNILKFSSTH-KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRI 81
           LH+  L  S  H     Q+HA  + +   +H  I+  L++LY   H  +L  ARS+FD  
Sbjct: 33  LHYPRLLSSCKHLNPLLQIHAQIIVSGFKHHHSIT-HLINLYSLFHKCDL--ARSVFDST 89

Query: 82  LQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEG 141
             +PS +L+N +I+ Y  +++ +EAL ++  ++++ L PD +T   V+K       ++EG
Sbjct: 90  -PNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEG 148

Query: 142 KQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKK 201
              HG + + G   D F+ + LV MY+K G++   R VFD M  +D+V+WN +I G  + 
Sbjct: 149 VWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQS 208

Query: 202 GEVEVAMKLFDEMP----DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSW--NA 255
            +   A+  F  M     +    S   L  G  K   +E+ R I   +  R+  S   N 
Sbjct: 209 EDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVSNG 268

Query: 256 MINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPN 315
           +I+ Y K GDVD A  +FD M  +D ++W +M+AGY  NG F+E LEL + M +G+V  N
Sbjct: 269 LIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRIN 328

Query: 316 DATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFR 375
             + VSA  A A    L KG+ +H   ++     D ++ T L+ MY+KCG  E A  +F 
Sbjct: 329 KVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFW 388

Query: 376 AISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVND 435
            +  + +  W+A+I  L   G   +AL LF +M    MKP  +T + +L AC+   L+  
Sbjct: 389 GLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKL 448

Query: 436 GRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGA 495
           G+      +    ++  +     LV +  + G+   A +T   M  R + V W SL++G 
Sbjct: 449 GKSIHCFTVK-ADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSR-DIVTWNSLINGY 506

Query: 496 RNHGN--KDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKD 553
              G+    I  +    L  + PD  G  V +    A     D+ + +  ++ K GF  D
Sbjct: 507 AQIGDPYNAIDMFYKLRLSAINPDA-GTMVGVVPACALLNDLDQGTCIHGLIVKLGFESD 565



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 137/489 (28%), Positives = 233/489 (47%), Gaps = 20/489 (4%)

Query: 51  YHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLF 110
           + S +S+ L+ LY      ++  AR +FD+++     V +  ++  Y  N    E L LF
Sbjct: 261 FSSAVSNGLIDLY--SKCGDVDVARRVFDQMVDQDD-VSWGTMMAGYAHNGCFVEVLELF 317

Query: 111 CDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKF 170
             +    +  +  +       AA    +++GK+IHG   +     D  V + L+ MYAK 
Sbjct: 318 DKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKC 377

Query: 171 GEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDR-DLFSW- 222
           GE +  +++F  +  +DLV+W+ +I   V+ G  E A+ LF EM      P+R  L S  
Sbjct: 378 GETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSIL 437

Query: 223 -TCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDL 281
             C      K GK      +   M + +L +  A+++ Y K G   +A   F+ M  RD+
Sbjct: 438 PACADLSLLKLGKSIHCFTVKADM-DSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDI 496

Query: 282 ITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSY 341
           +TWNS+I GY   G    A+++   + +  + P+  T+V  + A A L  L++G  +H  
Sbjct: 497 VTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGL 556

Query: 342 IVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRA--ISKKKVGHWTAMIVGLGMHGMAT 399
           IVK GF  D  +   LI MY+KCGS+ SA  +F     +K +V  W  +I     +G A 
Sbjct: 557 IVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVT-WNVIIAAYMQNGHAK 615

Query: 400 QALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCL 459
           +A+  F++M      P ++TF+ VL A ++     +G   F+  I   G          L
Sbjct: 616 EAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMA-FHACIIQMGFLSNTLVGNSL 674

Query: 460 VDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG--ARNHGNKDIGEYAANNLIKVAPD 517
           +D+  + G L+ ++     M  + + V W ++LSG     HG++ I  ++     +V  D
Sbjct: 675 IDMYAKCGQLDYSEKLFNEMDHK-DTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQID 733

Query: 518 TIGCYVVLS 526
           ++    VLS
Sbjct: 734 SVSFVSVLS 742



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 124/260 (47%), Gaps = 12/260 (4%)

Query: 40  LHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVF 99
           +H L VK        + + L+ +Y      +L  A  +F++       V +N++I  Y+ 
Sbjct: 553 IHGLIVKLGFESDCHVKNALIDMYAK--CGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQ 610

Query: 100 NQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFV 159
           N  + EA++ F  +      P++ T   V+  AA L A +EG   H  + ++GF  +  V
Sbjct: 611 NGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLV 670

Query: 160 LSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR-- 217
            +SL+ MYAK G++D   ++F+ MD KD VSWN ++ GY   G  + A+ LF  M +   
Sbjct: 671 GNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQV 730

Query: 218 --DLFSWTCLVDGFSKCGKVEIAREIFYRMPNR-----NLVSWNAMINGYMKAGDVDSAC 270
             D  S+  ++      G VE  R+IF+ M ++     +L  +  M++   +AG  D   
Sbjct: 731 QIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETL 790

Query: 271 ELFDDMEIR-DLITWNSMIA 289
                M +  D   W +++ 
Sbjct: 791 GFIKVMPVEPDAGVWGALLG 810


>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1221

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 238/693 (34%), Positives = 379/693 (54%), Gaps = 48/693 (6%)

Query: 3   TQTLQHSSPIHALQQHLPSRLHWNILK---FSSTHKETQQLHALSVKTNLIYHSGISSRL 59
           TQT Q    ++AL         W I +   +    +   Q+H   +K+ +   S    +L
Sbjct: 158 TQTNQRRRRMNAL-------FAWKITRKDQYCKNLRALTQIHGFFIKSGVDTDSYFIGKL 210

Query: 60  LSLYVDPHINN-LHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDR-F 117
           + L+    I++ L YAR +       P   ++N L++ Y  +   H ++ +F +++ + F
Sbjct: 211 I-LHCAISISDALPYARRLL-LCFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGF 268

Query: 118 LLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGR 177
           + PD+F+   V+K AA   +++ G Q+H    K G     FV ++L+ MY + G +   R
Sbjct: 269 IFPDSFSFAFVVKAAANFRSLRTGFQMHCQALKHGLDSHLFVATTLIGMYGECGCVGFAR 328

Query: 178 RVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEI 237
           +V                               FDEMP  +L +W  +V    +   V  
Sbjct: 329 KV-------------------------------FDEMPQPNLVAWNAVVTACFRGNDVSG 357

Query: 238 AREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRF 297
           AREIF +M  RN  SWN M+ GY+KAG+++ A  +F +M  RD ++W++MI G+  NG F
Sbjct: 358 AREIFDKMLVRNHTSWNVMLAGYIKAGELECAKRIFSEMPHRDDVSWSTMIVGFSHNGSF 417

Query: 298 MEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLL 357
            E+      +L  ++ PN+ +L   LSA +       G+ +H ++ K+G+     +   L
Sbjct: 418 NESFSYFRELLRAEMRPNEVSLTGVLSACSQSGAFEFGKTLHGFVEKSGYSWIVSVNNAL 477

Query: 358 IQMYSKCGSIESALTVFRAISKKK-VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT 416
           I MYS+CG++  A  VF  + +K+ +  WT+MI GL MHG   +A+ +FN+M   G+ P 
Sbjct: 478 IDMYSRCGNVPMARLVFEGMQEKRSIVSWTSMIAGLAMHGHGEEAIRIFNEMTESGVMPD 537

Query: 417 AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTI 476
            I+FI +L ACSHAGL+ +G  YF+ M   Y IEP +EHYGC+VD+  R+G L++A S I
Sbjct: 538 EISFISLLYACSHAGLIKEGEGYFSKMKRVYHIEPAVEHYGCMVDLYGRSGKLQKAYSFI 597

Query: 477 ESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWD 536
             MP+ P  ++W +LL    +HGN ++ E     L ++ P+  G  V+LSN+YA AG+W 
Sbjct: 598 CQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNVYATAGKWK 657

Query: 537 KVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLK-AA 595
            V+ +R+ M  +  +K    S +E    +++F   +K      E H KL E+  +L+  A
Sbjct: 658 DVASIRKSMIVQRIKKITAWSLVEVGKTMYKFTACEKKKEIDIEAHEKLKEIILRLRDEA 717

Query: 596 GHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSV 655
           G+ P+    L  +E++ EKE ++  HSE+LA+AF L  +   + IRIVKNLR+C DCH+V
Sbjct: 718 GYAPEVASALYDVEEE-EKEDQVSKHSEKLALAFALARLPKGANIRIVKNLRICRDCHAV 776

Query: 656 TKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDF 688
            KL S +Y  EI++RD +RFH FK+GSCSC D+
Sbjct: 777 MKLTSRVYGVEIVIRDRNRFHSFKDGSCSCGDY 809


>gi|356523586|ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 604

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 228/573 (39%), Positives = 340/573 (59%), Gaps = 9/573 (1%)

Query: 32  STHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYN 91
           S      Q+HA  +K NL     ++ +L++ +      +L  A ++F+ +  HP++ LYN
Sbjct: 32  SNLDSVNQIHAQVLKANLHQDLFVAPKLIAAF--SLCRHLASAVNVFNHV-PHPNVHLYN 88

Query: 92  LLIKCYVFNQRSHEALTL--FCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVF 149
            +I+ +  N  SH +L    F  +    L PDNFT P ++K      ++   + IH  V 
Sbjct: 89  SIIRAHAHNT-SHPSLPFNAFFQMQKNGLFPDNFTYPFLLKACTGPSSLPLVRMIHAHVE 147

Query: 150 KLGFGFDKFVLSSLVSMYAKFGE--IDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVA 207
           K GF  D FV +SL+  Y++ G   +D    +F AM ++D+V+WN +I G V+ GE+E A
Sbjct: 148 KFGFYGDIFVPNSLIDSYSRCGSAGLDGAMSLFLAMKERDVVTWNSMIGGLVRCGELEGA 207

Query: 208 MKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVD 267
            KLFDEMP+RD+ SW  ++DG++K G+++ A E+F RMP RN+VSW+ M+ GY K GD+D
Sbjct: 208 CKLFDEMPERDMVSWNTMLDGYAKAGEMDRAFELFERMPQRNIVSWSTMVCGYSKGGDMD 267

Query: 268 SACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVA 327
            A  LFD    ++++ W ++IAGY   G   EA EL   M    + P+D  L+S L+A A
Sbjct: 268 MARVLFDRCPAKNVVLWTTIIAGYAEKGFVREATELYGKMEEAGLRPDDGFLISILAACA 327

Query: 328 GLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAI-SKKKVGHWT 386
              +L  G+ +H+ + +  F     +    I MY+KCG +++A  VF  + +KK V  W 
Sbjct: 328 ESGMLGLGKRIHASMRRWRFRCGTKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWN 387

Query: 387 AMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIND 446
           +MI G  MHG   +AL+LF++M   G +P   TF+G+L AC+HAGLVN+GR+YF  M   
Sbjct: 388 SMIQGFAMHGHGEKALELFSRMVPEGFEPDTYTFVGLLCACTHAGLVNEGRKYFYSMEKV 447

Query: 447 YGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEY 506
           YGI P +EHYGC++D+L R G+L+EA + + SMPM PN +I  +LL+  R H + D    
Sbjct: 448 YGIVPQVEHYGCMMDLLGRGGHLKEAFTLLRSMPMEPNAIILGTLLNACRMHNDVDFARA 507

Query: 507 AANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLH 566
               L KV P   G Y +LSNIYA AG W  V+ VR  M   G +K  G+SSIE    +H
Sbjct: 508 VCEQLFKVEPTDPGNYSLLSNIYAQAGDWMNVANVRLQMMNTGGQKPSGASSIEVEEEVH 567

Query: 567 EFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVP 599
           EF V D+SHP++D+I+  +  +   L+  G+VP
Sbjct: 568 EFTVFDQSHPKSDDIYKMIDRLVQDLRQVGYVP 600


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 227/658 (34%), Positives = 365/658 (55%), Gaps = 55/658 (8%)

Query: 73  YARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGA 132
           +A  +FD + +   +V +N+++     + R  EAL +  D+  + +  D+ T    +   
Sbjct: 222 HALELFDSMPER-DVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTAC 280

Query: 133 ARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWN 192
           ARL +++ GKQ+H  V +     D +V S+LV +YAK G     + VF+++ D++ V+W 
Sbjct: 281 ARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAKGVFNSLHDRNNVAWT 340

Query: 193 CLIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDG-------------------- 228
            LI G+++ G    +++LF++M       D F+   L+ G                    
Sbjct: 341 VLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKS 400

Query: 229 ---------------FSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELF 273
                          ++KC  ++ A  IF  M  +++VSW +MI  + + G++  A E F
Sbjct: 401 GQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQVGNIAKAREFF 460

Query: 274 DDMEIRDLITWNSMIAGYELNGRFMEALELLETMLI-GDVLPNDATLVSALSAVAGLAVL 332
           D M  +++ITWN+M+  Y  +G   + L +   ML   DV P+  T V+     A L   
Sbjct: 461 DGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTYVTLFKGCADLGAN 520

Query: 333 NKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGL 392
             G  +    VK G ++D  +   +I MYSKCG I  A  VF  ++ K +  W AMI G 
Sbjct: 521 KLGDQIIGRTVKVGLILDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGY 580

Query: 393 GMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT 452
             HGM  QA+++F+ + + G KP  I+++ VL+ CSH+GLV +G+ YF+MM   + I P 
Sbjct: 581 SQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKSYFDMMKRVHNISPG 640

Query: 453 IEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLI 512
           +EH+ C+VD+L R G+L EAK  I+ MPM+P   +W +LLS  + HGN ++ E AA ++ 
Sbjct: 641 LEHFSCMVDLLGRAGHLTEAKDLIDEMPMKPTAEVWGALLSACKIHGNNELAELAAKHVF 700

Query: 513 KV-APDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVG 571
           ++ +PD+ G Y++++ IYA AG+ D  +++R++M+ +G +K+PG S +E    +H F   
Sbjct: 701 ELDSPDS-GSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVNNKVHVFKAD 759

Query: 572 DKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGL 631
           D SHPQ   I  KL E+  K+   G+V           D    E    +HSE+LA+AFGL
Sbjct: 760 DVSHPQVIAIRKKLDELMEKIARLGYVR---------TDSPRSEI---HHSEKLAVAFGL 807

Query: 632 INVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           +++ +  PI I+KNLR+C DCH+V KL+S +  RE ++RD  RFHHF  GSCSC D+W
Sbjct: 808 MSLPAWMPIHIMKNLRICGDCHTVIKLISSVTGREFVIRDAVRFHHFNGGSCSCGDYW 865



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 96/374 (25%), Positives = 174/374 (46%), Gaps = 42/374 (11%)

Query: 167 YAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLF-------DEMPDRDL 219
           Y K G +     +F  M  +D+ SWN L+ GY +  +   +++ F       D  P+   
Sbjct: 81  YVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMHRSGDSSPNAFT 140

Query: 220 FSWT---------------------------------CLVDGFSKCGKVEIAREIFYRMP 246
           F++                                   LVD F +CG V++A  +F R+ 
Sbjct: 141 FAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTVDLASRLFVRIK 200

Query: 247 NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLET 306
              +   N+M+ GY+K   VD A ELFD M  RD+++WN M++    +GR  EAL+++  
Sbjct: 201 EPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVD 260

Query: 307 MLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGS 366
           M    V  +  T  S+L+A A L+ L  G+ +H+ +++N   +D  + + L+++Y+KCG 
Sbjct: 261 MQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGC 320

Query: 367 IESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNA 426
            + A  VF ++  +    WT +I G   HG  T++++LFN+M    M         +++ 
Sbjct: 321 FKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISG 380

Query: 427 CSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFV 486
           C     +  GR+  ++ +    I+  +     L+ +  +   L+ A+S    M  + + V
Sbjct: 381 CCSRMDLCLGRQLHSLCLKSGQIQAVVVS-NSLISMYAKCDNLQSAESIFRFMNEK-DIV 438

Query: 487 IWMSLLSGARNHGN 500
            W S+++     GN
Sbjct: 439 SWTSMITAHSQVGN 452



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 148/298 (49%), Gaps = 41/298 (13%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVD-----------------------------PHI 68
           +QLH+L +K+  I    +S+ L+S+Y                                 +
Sbjct: 391 RQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQV 450

Query: 69  NNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL-DRFLLPDNFTLPC 127
            N+  AR  FD  +   +++ +N ++  Y+ +    + L ++  +L ++ + PD  T   
Sbjct: 451 GNIAKAREFFDG-MSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTYVT 509

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD 187
           + KG A LGA K G QI G   K+G   D  V +++++MY+K G I   R+VFD ++ KD
Sbjct: 510 LFKGCADLGANKLGDQIIGRTVKVGLILDTSVANAVITMYSKCGRILEARKVFDFLNVKD 569

Query: 188 LVSWNCLIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREIFY 243
           +VSWN +I GY + G  + A+++FD++  R    D  S+  ++ G S  G V+  +  F 
Sbjct: 570 IVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKSYFD 629

Query: 244 RMPNRNLVS-----WNAMINGYMKAGDVDSACELFDDMEIRDLI-TWNSMIAGYELNG 295
            M   + +S     ++ M++   +AG +  A +L D+M ++     W ++++  +++G
Sbjct: 630 MMKRVHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDEMPMKPTAEVWGALLSACKIHG 687


>gi|357134267|ref|XP_003568739.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 818

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 230/634 (36%), Positives = 365/634 (57%), Gaps = 24/634 (3%)

Query: 70  NLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVI 129
           +L  A+ +FD +++  S+V + LLI  YV    + + + LF  +LD    PD +++  +I
Sbjct: 195 DLVAAQRVFDGLIERTSVV-WTLLITRYVQAGCASKVVELFLHMLDDGFEPDGYSMSSMI 253

Query: 130 KGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFG---EIDLGRRVFDAMDDK 186
                LG+++ G+Q+H +  +LG   D  V   LV MYAK      ++  R+VF  M   
Sbjct: 254 SACTELGSVRLGQQLHSVALRLGLVSDSCVSCGLVDMYAKLKMERSMEHARKVFKTMPRH 313

Query: 187 DLVSWNCLIDGYVKKGEVEV-AMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREI 241
           +++SW  LI GYV+ G  E   M LF EM +  +     +++ L+   +     +  R+I
Sbjct: 314 NVMSWTALISGYVQSGVQENNVMALFREMLNESIRPNHITYSNLLKACANLSDQDSGRQI 373

Query: 242 FYRMPNRNL----VSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRF 297
              +   ++    V  NA+++ Y ++G ++ A + FD +   ++++ +  +     N   
Sbjct: 374 HAHVLKTSIAHVNVVGNALVSMYAESGCMEEARKAFDQLYETNILSMSPDVETERNNASC 433

Query: 298 MEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLL 357
              +E ++  +      +  T  S LSA A + +L KG+ +H+  +K GF  D  +   L
Sbjct: 434 SSKIEGMDDGV------STFTFASLLSAAASVGLLTKGQKLHALSMKAGFRSDQGISNSL 487

Query: 358 IQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA 417
           + MY++CG +E A   F  +    V  WT++I GL  HG A QAL +F+ M   G+KP  
Sbjct: 488 VSMYARCGYLEDACRAFDEMKDHNVISWTSIISGLAKHGYAKQALSMFHDMILAGVKPND 547

Query: 418 ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIE 477
           +T+I VL+ACSH GLV +G+ +F  M  D+G+ P +EHY C+VD+L R+G +EEA+  I 
Sbjct: 548 VTYIAVLSACSHVGLVKEGKEHFRSMQKDHGLLPRMEHYACIVDLLARSGLVEEARQFIN 607

Query: 478 SMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDK 537
            MP + + ++W +LLS  R +GN +IGE AAN++I + P     YV+LSN+YA AG WD+
Sbjct: 608 EMPCKADALVWKTLLSACRTYGNTEIGEIAANHVINLEPRDPAPYVLLSNLYADAGLWDE 667

Query: 538 VSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGH 597
           V+ +R +M+ +   K+ G S ++    +HEF  GD SHP   +I++KL  +  ++K  G+
Sbjct: 668 VARIRSLMRDKNLSKETGLSWMDVGNTIHEFRAGDTSHPLAIDIYAKLVTLIREIKDIGY 727

Query: 598 VPDTTQVLLCIEDQKE--KEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSV 655
           VPDT+ VL    D  E  KE  L  HSE++A+AFGLI   +  P+RI KNLRVC DCHS 
Sbjct: 728 VPDTSIVL---HDMSEELKEQYLLQHSEKIAVAFGLITTSATKPMRIFKNLRVCADCHSA 784

Query: 656 TKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            K +S    REII+RD++RFH  K+G CSC ++W
Sbjct: 785 IKYISKSTGREIILRDSNRFHRMKDGICSCGEYW 818



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 118/461 (25%), Positives = 210/461 (45%), Gaps = 51/461 (11%)

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLG-FGFDKFVLSSLVSMYAKFGEIDLGRRVFDAM-DD 185
           ++  AAR G ++ G+ +H  + +      D  V +SL++MY+K G ++  RRVFD M   
Sbjct: 46  LLTSAARAGDLRLGRALHRRLLRSEILDTDAVVANSLLTMYSKCGAVEAARRVFDQMCGV 105

Query: 186 KDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIF--- 242
           +DLVSW  +     + G    +++L  EM +  L       + F+ C     AR  F   
Sbjct: 106 RDLVSWTAMASCLARNGAERESLRLLGEMLELGLRP-----NAFTLCAA---ARACFPQE 157

Query: 243 -YRMPNRNLVS-------WN-------AMINGYMKAGDVDSACELFDDMEIRDLITWNSM 287
            +R+    ++        W        A+I+ + + GD+ +A  +FD +  R  + W  +
Sbjct: 158 LFRLAGGVVLGFVLKTGFWGTDVSVGCALIDMFARNGDLVAAQRVFDGLIERTSVVWTLL 217

Query: 288 IAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGF 347
           I  Y   G   + +EL   ML     P+  ++ S +SA   L  +  G+ +HS  ++ G 
Sbjct: 218 ITRYVQAGCASKVVELFLHMLDDGFEPDGYSMSSMISACTELGSVRLGQQLHSVALRLGL 277

Query: 348 VVDGVLGTLLIQMYSKCG---SIESALTVFRAISKKKVGHWTAMIVGLGMHGMA-TQALD 403
           V D  +   L+ MY+K     S+E A  VF+ + +  V  WTA+I G    G+     + 
Sbjct: 278 VSDSCVSCGLVDMYAKLKMERSMEHARKVFKTMPRHNVMSWTALISGYVQSGVQENNVMA 337

Query: 404 LFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHY----GCL 459
           LF +M    ++P  IT+  +L AC++    + GR+     I+ + ++ +I H       L
Sbjct: 338 LFREMLNESIRPNHITYSNLLKACANLSDQDSGRQ-----IHAHVLKTSIAHVNVVGNAL 392

Query: 460 VDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTI 519
           V +   +G +EEA+   + +    N +     +   RN+        + ++ I+   D +
Sbjct: 393 VSMYAESGCMEEARKAFDQL-YETNILSMSPDVETERNNA-------SCSSKIEGMDDGV 444

Query: 520 GCYVVLSNIYAAA--GQWDKVSEVREMMKKRGFRKDPGSSS 558
             +   S + AAA  G   K  ++  +  K GFR D G S+
Sbjct: 445 STFTFASLLSAAASVGLLTKGQKLHALSMKAGFRSDQGISN 485



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 156/314 (49%), Gaps = 30/314 (9%)

Query: 32  STHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYN 91
           S     +Q+HA  +KT++ + + + + L+S+Y +     +  AR  FD++ +       N
Sbjct: 365 SDQDSGRQIHAHVLKTSIAHVNVVGNALVSMYAES--GCMEEARKAFDQLYE------TN 416

Query: 92  LL-IKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFK 150
           +L +   V  +R++ + +   + +D  +    FT   ++  AA +G + +G+++H L  K
Sbjct: 417 ILSMSPDVETERNNASCSSKIEGMDDGV--STFTFASLLSAAASVGLLTKGQKLHALSMK 474

Query: 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
            GF  D+ + +SLVSMYA+ G ++   R FD M D +++SW  +I G  K G  + A+ +
Sbjct: 475 AGFRSDQGISNSLVSMYARCGYLEDACRAFDEMKDHNVISWTSIISGLAKHGYAKQALSM 534

Query: 211 FDEM------PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRN-----LVSWNAMING 259
           F +M      P+    ++  ++   S  G V+  +E F  M   +     +  +  +++ 
Sbjct: 535 FHDMILAGVKPND--VTYIAVLSACSHVGLVKEGKEHFRSMQKDHGLLPRMEHYACIVDL 592

Query: 260 YMKAGDVDSACELFDDMEIR-DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDAT 318
             ++G V+ A +  ++M  + D + W ++++     G   E  E+    +I ++ P D  
Sbjct: 593 LARSGLVEEARQFINEMPCKADALVWKTLLSACRTYGN-TEIGEIAANHVI-NLEPRDPA 650

Query: 319 ---LVSALSAVAGL 329
              L+S L A AGL
Sbjct: 651 PYVLLSNLYADAGL 664



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 111/247 (44%), Gaps = 27/247 (10%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           Q+LHALS+K       GIS+ L+S+Y       L  A   FD +  H +++ +  +I   
Sbjct: 466 QKLHALSMKAGFRSDQGISNSLVSMYA--RCGYLEDACRAFDEMKDH-NVISWTSIISGL 522

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQ-------IHGLVFK 150
             +  + +AL++F D++   + P++ T   V+   + +G +KEGK+        HGL+ +
Sbjct: 523 AKHGYAKQALSMFHDMILAGVKPNDVTYIAVLSACSHVGLVKEGKEHFRSMQKDHGLLPR 582

Query: 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK-DLVSWNCLIDGYVKKGEV---EV 206
           +         + +V + A+ G ++  R+  + M  K D + W  L+      G     E+
Sbjct: 583 MEH------YACIVDLLARSGLVEEARQFINEMPCKADALVWKTLLSACRTYGNTEIGEI 636

Query: 207 AMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNL-----VSWNAMINGY- 260
           A      +  RD   +  L + ++  G  +    I   M ++NL     +SW  + N   
Sbjct: 637 AANHVINLEPRDPAPYVLLSNLYADAGLWDEVARIRSLMRDKNLSKETGLSWMDVGNTIH 696

Query: 261 -MKAGDV 266
             +AGD 
Sbjct: 697 EFRAGDT 703


>gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 600

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 224/566 (39%), Positives = 327/566 (57%), Gaps = 20/566 (3%)

Query: 143 QIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVF--------DAMDDKDLVSWNCL 194
           QIH  + K G   +  +L+   S  +    I                     D   +N L
Sbjct: 36  QIHAFILKTGLQNNPLILTKFTSTSSNLNSIHYATSFLFPPSHTTSTPTPSYDAFLFNTL 95

Query: 195 IDGYVKKGEVEVAMKLFDEMPDR-----DLFSWTCLVDGFSKCGKVEIAREIFYRMPN-- 247
           I  Y +  + +    LF     R     + F++  ++ G +  G + + + +   +    
Sbjct: 96  IRAYSQTRDSKSNSFLFYRTMLRYGVTPNKFTFPFVLKGCAGIGSLRLGKCVHGCVVKFG 155

Query: 248 --RNLVSWNAMINGYMKAGD--VDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALEL 303
              ++   N +I+ Y   G+   + A ++FDD    D +TW++MIAG+   G    A++L
Sbjct: 156 FEEDVHVLNTLIHMYCCLGEDGFEFAEKVFDDSPKMDTVTWSAMIAGFVRLGCSSRAVDL 215

Query: 304 LETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSK 363
              M +  V P++ T+VS LSA A L  L  G+W+ SY+ K        L   LI M++K
Sbjct: 216 FREMQVMGVCPDEITMVSVLSACADLGALELGKWVESYVEKKNIPKSVELCNALIDMFAK 275

Query: 364 CGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGV 423
           CG+++ A+ +FR +  + +  WT++I GL MHG    A+ LF++M   G+ P  + FIGV
Sbjct: 276 CGNVDKAIKLFRQMDSRTIVSWTSVIAGLAMHGRGLDAVSLFDEMVENGITPDDVAFIGV 335

Query: 424 LNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRP 483
           L+ACSH+GLV+ GR YF  M  ++ I P +EHYGC+VD+LCR G+++EA   ++ MP  P
Sbjct: 336 LSACSHSGLVDKGRYYFGSMERNFSIVPKVEHYGCMVDLLCRGGFVKEAFEFVQKMPFEP 395

Query: 484 NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVRE 543
           N +IW ++++     G   +GE  +  LIK  P     YV+LSNIYA   QW+K ++VRE
Sbjct: 396 NQIIWRTIITACHATGELKLGESISKELIKSEPMHESNYVLLSNIYAKLRQWEKKTKVRE 455

Query: 544 MMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQ 603
           MM  RG +K PGS+ IE    ++EFV GDKSH Q  EI+  + EM  ++K AG+VP T+Q
Sbjct: 456 MMDMRGMKKVPGSTMIEVNNEMYEFVAGDKSHDQYKEIYEMVDEMGREIKKAGYVPTTSQ 515

Query: 604 VLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIY 663
           VLL I D+++KE  L  HSE+LAIAF L+N    + IRIVKNLRVC DCHS TK +S +Y
Sbjct: 516 VLLDI-DEEDKEDALYRHSEKLAIAFALLNTPPGTSIRIVKNLRVCEDCHSATKFISKVY 574

Query: 664 NREIIVRDNSRFHHFKNGSCSCKDFW 689
           NREI+VRD +RFHHFKNG CSC+DFW
Sbjct: 575 NREIVVRDRNRFHHFKNGLCSCRDFW 600



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 117/270 (43%), Gaps = 15/270 (5%)

Query: 40  LHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSL--VLYNLLIKCY 97
           +H   VK        + + L+ +Y     +   +A  +FD     P +  V ++ +I  +
Sbjct: 147 VHGCVVKFGFEEDVHVLNTLIHMYCCLGEDGFEFAEKVFD---DSPKMDTVTWSAMIAGF 203

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
           V    S  A+ LF ++    + PD  T+  V+   A LGA++ GK +   V K       
Sbjct: 204 VRLGCSSRAVDLFREMQVMGVCPDEITMVSVLSACADLGALELGKWVESYVEKKNIPKSV 263

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
            + ++L+ M+AK G +D   ++F  MD + +VSW  +I G    G    A+ LFDEM + 
Sbjct: 264 ELCNALIDMFAKCGNVDKAIKLFRQMDSRTIVSWTSVIAGLAMHGRGLDAVSLFDEMVEN 323

Query: 218 ----DLFSWTCLVDGFSKCGKVEIAREIFYRMP-NRNLVS----WNAMINGYMKAGDVDS 268
               D  ++  ++   S  G V+  R  F  M  N ++V     +  M++   + G V  
Sbjct: 324 GITPDDVAFIGVLSACSHSGLVDKGRYYFGSMERNFSIVPKVEHYGCMVDLLCRGGFVKE 383

Query: 269 ACELFDDMEIR-DLITWNSMIAGYELNGRF 297
           A E    M    + I W ++I      G  
Sbjct: 384 AFEFVQKMPFEPNQIIWRTIITACHATGEL 413


>gi|224111152|ref|XP_002315764.1| predicted protein [Populus trichocarpa]
 gi|222864804|gb|EEF01935.1| predicted protein [Populus trichocarpa]
          Length = 452

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 204/453 (45%), Positives = 295/453 (65%), Gaps = 1/453 (0%)

Query: 237 IAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGR 296
           +A+++F ++ +RNLV   AMI+GY + G V+ A  +FD ME +DL+ W++MI+GY  + +
Sbjct: 1   MAQKLFTKISSRNLVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDK 60

Query: 297 FMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTL 356
             EAL L   M +  + P+  T++S +SA A L VL++ +W+H Y+ KNG      +   
Sbjct: 61  PQEALNLFSEMQVFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNA 120

Query: 357 LIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT 416
           LI MY+KCG++ +A  VF  +  + V  WT+MI    +HG A+ AL  F +M    +KP 
Sbjct: 121 LIDMYAKCGNLGAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPN 180

Query: 417 AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTI 476
            +TF+GVL ACSHAGLV +GRR F  M N++ I P  EHYGC+VD+  R   L +A   +
Sbjct: 181 GVTFVGVLYACSHAGLVEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLLRDALELV 240

Query: 477 ESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWD 536
           E+MP+ PN VIW SL++  + HG  ++GE+AA  ++++ PD  G  V LSNIYA   +W 
Sbjct: 241 ETMPLAPNVVIWGSLMAACQIHGENELGEFAAKQVLELEPDHDGALVQLSNIYAKDRRWQ 300

Query: 537 KVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAG 596
            V E+R +MK+RG  K+ G S IE    ++EFV+ DK H Q D+I+ KL E+  +LK  G
Sbjct: 301 DVGELRNLMKQRGISKERGCSRIELNNQVYEFVMADKKHKQADKIYEKLDEVVKELKLVG 360

Query: 597 HVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVT 656
           + P+T  VL+ +E++ +KE  L  HSE+LA+ +GL+     S IRIVKNLRVC DCH+  
Sbjct: 361 YTPNTRSVLVDVEEEGKKEVVLW-HSEKLALCYGLMGEGKGSCIRIVKNLRVCEDCHTFI 419

Query: 657 KLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           KL+S +Y  EIIVRD +RFHH+K G CSC D+W
Sbjct: 420 KLVSKVYGMEIIVRDRTRFHHYKAGVCSCNDYW 452



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 121/232 (52%), Gaps = 11/232 (4%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           AR IFD+ ++   LV ++ +I  Y  + +  EAL LF ++    + PD  T+  VI   A
Sbjct: 33  ARLIFDQ-MEEKDLVCWSAMISGYAESDKPQEALNLFSEMQVFGIKPDQVTILSVISACA 91

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
           RLG +   K IH  V K G G    V ++L+ MYAK G +   R VF+ M  ++++SW  
Sbjct: 92  RLGVLDRAKWIHMYVDKNGLGGALPVNNALIDMYAKCGNLGAARGVFEKMQSRNVISWTS 151

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNRN 249
           +I+ +   G+   A+K F +M D ++     ++  ++   S  G VE  R  F  M N +
Sbjct: 152 MINAFAIHGDASNALKFFYQMKDENIKPNGVTFVGVLYACSHAGLVEEGRRTFASMTNEH 211

Query: 250 LVS-----WNAMINGYMKAGDVDSACELFDDMEIR-DLITWNSMIAGYELNG 295
            ++     +  M++ + +A  +  A EL + M +  +++ W S++A  +++G
Sbjct: 212 NITPKHEHYGCMVDLFGRANLLRDALELVETMPLAPNVVIWGSLMAACQIHG 263



 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 79/158 (50%), Gaps = 39/158 (24%)

Query: 159 VLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM---- 214
           VL++++S Y++ G ++  R +FD M++KDLV W+ +I GY +  + + A+ LF EM    
Sbjct: 16  VLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKPQEALNLFSEMQVFG 75

Query: 215 --PDR----------------DLFSW-----------------TCLVDGFSKCGKVEIAR 239
             PD+                D   W                   L+D ++KCG +  AR
Sbjct: 76  IKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNALIDMYAKCGNLGAAR 135

Query: 240 EIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDME 277
            +F +M +RN++SW +MIN +   GD  +A + F  M+
Sbjct: 136 GVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMK 173


>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
 gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
          Length = 936

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 233/627 (37%), Positives = 357/627 (56%), Gaps = 16/627 (2%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           A  +F R+ Q  +L+ ++ +I  +  +    EAL  F  +    +LP+  T   ++ G  
Sbjct: 315 AAQVFGRMKQ-TNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFT 373

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
               ++E  +IH L+ + G      + ++LV++Y +    D  R VFD ++  +L+SWN 
Sbjct: 374 TPSGLEELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDARTVFDQLELPNLISWNS 433

Query: 194 LIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPN 247
           +I  YV+    + A++LF  M      PDR  F     + G    G     R++ ++   
Sbjct: 434 MIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFM---TILGACTIGSHGRTRKLVHQCVE 490

Query: 248 RNLVS-----WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALE 302
            + +        +++N Y KAG++D A  +  +M+ + +  WN +I GY L+GR  EALE
Sbjct: 491 ESGLGGSPLVQTSLVNMYAKAGELDVAEVILQEMDEQQITAWNVLINGYALHGRSREALE 550

Query: 303 LLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYS 362
             + + +  +  +  T +S L+A      L +G+ +HS  V+ G   D ++   L  MYS
Sbjct: 551 AYQKLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYS 610

Query: 363 KCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIG 422
           KCGS+E+A  +F ++  +    W  M+     HG + + L L  KM + G+K   ITF+ 
Sbjct: 611 KCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVS 670

Query: 423 VLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMR 482
           VL++CSHAGL+ +G +YF+ + +D GIE   EHYGCLVD+L R G L+EA+  I  MP+ 
Sbjct: 671 VLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPLE 730

Query: 483 PNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVR 542
           P  V W SLL   R   + D G+ AA  L+++ P      VVLSNIY+  G W   +++R
Sbjct: 731 PGIVTWASLLGACRVQKDLDRGKLAAGKLLELDPGNSSASVVLSNIYSERGDWKNAAKLR 790

Query: 543 EMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTT 602
             M  R  +K PG SSI+ +  +HEF V D SHP+  EI+ K+ E+   ++ AG+VPDT 
Sbjct: 791 RAMASRRVKKVPGISSIQVKNKVHEFRVRDTSHPRAAEIYDKVEELCFAMREAGYVPDTK 850

Query: 603 QVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGI 662
            VL  + D+++KE+ L  HSE+LAIAFGLI+    S + I KNLRVC DCH+ TK +S I
Sbjct: 851 MVLHDV-DEEQKESLLAYHSEKLAIAFGLISTPETSSLHIFKNLRVCEDCHTATKFISKI 909

Query: 663 YNREIIVRDNSRFHHFKNGSCSCKDFW 689
             REI+VRDN RFHHF++GSCSCKD+W
Sbjct: 910 TGREIVVRDNHRFHHFRDGSCSCKDYW 936



 Score =  158 bits (400), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 115/448 (25%), Positives = 204/448 (45%), Gaps = 75/448 (16%)

Query: 86  SLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIH 145
           ++V +N++I  Y   +   EAL LF  +L   + P+  TL  V+        +++G  +H
Sbjct: 22  NVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAITLVAVLNSCGSFRELRDGILVH 81

Query: 146 GLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEV- 204
            L  + GF  +  V ++L++MY K G +   + VF+ M +K++V+WN ++  Y  +G   
Sbjct: 82  ALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMAEKNVVTWNAMLGVYSLQGCCW 141

Query: 205 EVAMKLFDEM---------------------PDR------------------DLFSWTCL 225
           ++A++LF  M                     PD                   D+F  T L
Sbjct: 142 KLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTAL 201

Query: 226 VDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWN 285
           V+ ++KCG +  AR++F  MP R++ +WN                               
Sbjct: 202 VNTYTKCGSLTDARKVFDGMPCRSVGTWN------------------------------- 230

Query: 286 SMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKN 345
           SMI+ Y ++ R  EA  + + M       +  T +S L A      L  G+ +   I + 
Sbjct: 231 SMISAYSISERSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESISET 290

Query: 346 GFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLF 405
            F +D  +GT LI MY++C S E A  VF  + +  +  W+A+I     HG   +AL  F
Sbjct: 291 SFELDLFVGTALITMYARCRSPEDAAQVFGRMKQTNLITWSAIITAFADHGHCGEALRYF 350

Query: 406 NKMCRMGMKPTAITFIGVLNA-CSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILC 464
             M + G+ P  +TFI +LN   + +GL    R   +++I ++G++ T      LV++  
Sbjct: 351 RMMQQEGILPNRVTFISLLNGFTTPSGLEELSR--IHLLITEHGLDDTTTMRNALVNVYG 408

Query: 465 RTGYLEEAKSTIESMPMRPNFVIWMSLL 492
           R    ++A++  + + + PN + W S++
Sbjct: 409 RCESPDDARTVFDQLEL-PNLISWNSMI 435



 Score =  129 bits (325), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 166/344 (48%), Gaps = 11/344 (3%)

Query: 166 MYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLF-SWTC 224
           MY++ G +      F  +  +++VSWN +I  Y      + A+ LF  M    +  +   
Sbjct: 1   MYSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAIT 60

Query: 225 LVDGFSKCGKVEIARE-------IFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDME 277
           LV   + CG     R+          R   +N +   A++N Y K G +  A  +F++M 
Sbjct: 61  LVAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMA 120

Query: 278 IRDLITWNSMIAGYELNGRFME-ALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGR 336
            ++++TWN+M+  Y L G   + A+EL   ML+  V  N  T ++ L++V     L KG+
Sbjct: 121 EKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGK 180

Query: 337 WMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHG 396
           ++HS + ++   +D  + T L+  Y+KCGS+  A  VF  +  + VG W +MI    +  
Sbjct: 181 FIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISE 240

Query: 397 MATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHY 456
            + +A  +F +M + G +   +TF+ +L+AC +   +  G ++    I++   E  +   
Sbjct: 241 RSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHG-KHVRESISETSFELDLFVG 299

Query: 457 GCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGN 500
             L+ +  R    E+A      M  + N + W ++++   +HG+
Sbjct: 300 TALITMYARCRSPEDAAQVFGRMK-QTNLITWSAIITAFADHGH 342



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 115/500 (23%), Positives = 205/500 (41%), Gaps = 76/500 (15%)

Query: 40  LHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVF 99
           +HALS++     ++ +++ LL++Y       L  A+S+F+ + +  ++V +N ++  Y  
Sbjct: 80  VHALSLERGFFQNTLVATALLNMY--GKCGTLLDAQSVFEEMAE-KNVVTWNAMLGVYSL 136

Query: 100 NQRSHE-ALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKF 158
                + A+ LF  +L   +  +  T   V+       A+++GK IH  V +     D F
Sbjct: 137 QGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVF 196

Query: 159 VLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP--- 215
           V ++LV+ Y K G +   R+VFD M  + + +WN +I  Y        A  +F  M    
Sbjct: 197 VNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQQEG 256

Query: 216 ---DR---------------------------------DLFSWTCLVDGFSKCGKVEIAR 239
              DR                                 DLF  T L+  +++C   E A 
Sbjct: 257 ERCDRVTFLSILDACVNPETLQHGKHVRESISETSFELDLFVGTALITMYARCRSPEDAA 316

Query: 240 EIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFME 299
           ++F RM   NL++W+A+I  +                                 +G   E
Sbjct: 317 QVFGRMKQTNLITWSAIITAFAD-------------------------------HGHCGE 345

Query: 300 ALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQ 359
           AL     M    +LPN  T +S L+     + L +   +H  I ++G      +   L+ 
Sbjct: 346 ALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMRNALVN 405

Query: 360 MYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAIT 419
           +Y +C S + A TVF  +    +  W +MI           AL LF  M + G++P  + 
Sbjct: 406 VYGRCESPDDARTVFDQLELPNLISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDRVN 465

Query: 420 FIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM 479
           F+ +L AC+  G     R+  +  + + G+  +      LV++  + G L+ A+  ++ M
Sbjct: 466 FMTILGACT-IGSHGRTRKLVHQCVEESGLGGSPLVQTSLVNMYAKAGELDVAEVILQEM 524

Query: 480 PMRPNFVIWMSLLSGARNHG 499
                   W  L++G   HG
Sbjct: 525 D-EQQITAWNVLINGYALHG 543


>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
          Length = 869

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 231/635 (36%), Positives = 354/635 (55%), Gaps = 33/635 (5%)

Query: 87  LVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHG 146
           +V +N ++   V + R  EA+ +  D++ R + PD  T    +   ++L  +  G+++H 
Sbjct: 236 VVTWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGREMHA 295

Query: 147 LVFK-LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD--KDLVSWNCLIDGYVKKGE 203
            V K      + FV S+LV MYA    + + RRVFD +    + L  WN ++ GY + G 
Sbjct: 296 YVLKDSDLAANSFVASALVDMYASHERVGVARRVFDMVPGGHRQLGLWNAMVCGYAQAGM 355

Query: 204 VEVAMKLFDEMPDRD--LFSWTCLVDGFSKC-------GKVEIAREIFYRMPNRNLVSWN 254
            E A++LF  M      + S T +      C       GK  +   +  R    N    N
Sbjct: 356 DEEALELFARMEAEAGVVPSETTIAGVLPACARSETFAGKEAVHGYVLKRGMADNPFVQN 415

Query: 255 AMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETM------- 307
           A+++ Y + GD+++A  +F  +E RD+++WN++I G  + G   +A +L+  M       
Sbjct: 416 ALMDLYARLGDMEAARWIFAAIEPRDVVSWNTLITGCVVQGHIHDAFQLVREMQQQGRFT 475

Query: 308 -------LIG----DVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTL 356
                  + G     V+PN+ TL++ L   A LA   KG+ +H Y +++    D  +G+ 
Sbjct: 476 DATTEDGIAGTDEEPVVPNNVTLMTLLPGCAMLAAPAKGKEIHGYAMRHALDSDIAVGSA 535

Query: 357 LIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG-MKP 415
           L+ MY+KCG +  +  VF  + K+ V  W  +I+  GMHG+  +A+ LF++M      KP
Sbjct: 536 LVDMYAKCGCLALSRAVFDRLPKRNVITWNVLIMAYGMHGLGDEAIALFDRMVMSNEAKP 595

Query: 416 TAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKST 475
             +TFI  L ACSH+G+V+ G   F+ M  ++G++PT + + C VDIL R G L+EA S 
Sbjct: 596 NEVTFIAALAACSHSGMVDRGMELFHSMKRNHGVQPTPDLHACAVDILGRAGRLDEAYSI 655

Query: 476 IESM-PMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQ 534
           I SM P       W S L   R H N  +GE AA  L ++ PD    YV+L NIY+AAG 
Sbjct: 656 ITSMEPGEQQVSAWSSFLGACRLHRNVPLGEIAAERLFQLEPDEASHYVLLCNIYSAAGL 715

Query: 535 WDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKA 594
           W+K SEVR  M++RG  K+PG S IE  GV+H F+ G+ +HP++  +H+ +  +  +++ 
Sbjct: 716 WEKSSEVRNRMRQRGVSKEPGCSWIELDGVIHRFMAGESAHPESTLVHAHMDALWERMRN 775

Query: 595 AGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHS 654
            G+ PDT+ VL  IE + EK A L  HSE+LAIAFGL+     + IR+ KNLRVCNDCH 
Sbjct: 776 QGYTPDTSSVLHDIE-ESEKAAILRYHSEKLAIAFGLLRTPPGATIRVAKNLRVCNDCHE 834

Query: 655 VTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
             K +S +  REI++RD  RFHHF +G+CSC D+W
Sbjct: 835 AAKFISRMVGREIVLRDVRRFHHFVDGACSCGDYW 869



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 114/403 (28%), Positives = 197/403 (48%), Gaps = 26/403 (6%)

Query: 121 DNFTLPCVIKGAARLGAIKEGKQIHGLVFK--LGFGFDKFVLSSLVSMYAKFGEIDLGRR 178
           D+F LP   K AA L ++   + IHG   +  L  GF   V ++L++ YA+ G++     
Sbjct: 58  DHFALPPAAKSAAALRSLIAVRSIHGAALRRDLLHGFTPAVANALLTAYARCGDLTAALA 117

Query: 179 VFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM--PDRDLFSWTCLVDGFSKCG--- 233
           +F+AM  +D V++N LI           A+    +M      L S+T LV     C    
Sbjct: 118 LFNAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHPLSSFT-LVSVLLACSHLA 176

Query: 234 -KVEIAREIF-YRMPNRNL-----VSWNAMINGYMKAGDVDSACELFDDMEIRD-----L 281
             + + RE   + + N  L      ++NA+++ Y + G VD A  LF  ++  D     +
Sbjct: 177 EDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQMLFGSVDTTDSPGGGV 236

Query: 282 ITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSY 341
           +TWN+M++    +GR  EA+E++  M+   V P+  T  SAL A + L +L+ GR MH+Y
Sbjct: 237 VTWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGREMHAY 296

Query: 342 IVKNG-FVVDGVLGTLLIQMYSKCGSIESALTVFRAI--SKKKVGHWTAMIVGLGMHGMA 398
           ++K+     +  + + L+ MY+    +  A  VF  +    +++G W AM+ G    GM 
Sbjct: 297 VLKDSDLAANSFVASALVDMYASHERVGVARRVFDMVPGGHRQLGLWNAMVCGYAQAGMD 356

Query: 399 TQALDLFNKM-CRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYG 457
            +AL+LF +M    G+ P+  T  GVL AC+ +     G+   +  +   G+        
Sbjct: 357 EEALELFARMEAEAGVVPSETTIAGVLPACARSETFA-GKEAVHGYVLKRGMADNPFVQN 415

Query: 458 CLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGN 500
            L+D+  R G +E A+    ++  R + V W +L++G    G+
Sbjct: 416 ALMDLYARLGDMEAARWIFAAIEPR-DVVSWNTLITGCVVQGH 457



 Score = 47.8 bits (112), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 48/226 (21%), Positives = 101/226 (44%), Gaps = 22/226 (9%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +++H  +++  L     + S L+ +Y       L  +R++FDR+ +  +++ +N+LI  Y
Sbjct: 515 KEIHGYAMRHALDSDIAVGSALVDMYAK--CGCLALSRAVFDRLPKR-NVITWNVLIMAY 571

Query: 98  VFNQRSHEALTLFCDLLDRFLL-----PDNFTLPCVIKGAARLGAIKEGKQI-HGLVFKL 151
             +    EA+ LF    DR ++     P+  T    +   +  G +  G ++ H +    
Sbjct: 572 GMHGLGDEAIALF----DRMVMSNEAKPNEVTFIAALAACSHSGMVDRGMELFHSMKRNH 627

Query: 152 GFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD--DKDLVSWN-----CLIDGYVKKGEV 204
           G      + +  V +  + G +D    +  +M+  ++ + +W+     C +   V  GE+
Sbjct: 628 GVQPTPDLHACAVDILGRAGRLDEAYSIITSMEPGEQQVSAWSSFLGACRLHRNVPLGEI 687

Query: 205 EVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNL 250
             A +LF   PD +   +  L + +S  G  E + E+  RM  R +
Sbjct: 688 -AAERLFQLEPD-EASHYVLLCNIYSAAGLWEKSSEVRNRMRQRGV 731


>gi|225427280|ref|XP_002278897.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
          Length = 719

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 220/567 (38%), Positives = 347/567 (61%), Gaps = 17/567 (2%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           KE  Q+H   + + L+     + R +        +++ +A S+F+  L+ P   + N ++
Sbjct: 73  KEFNQIHTQLIVSGLLQQPLAAGRAVKTLCS-FPDSVQHAVSLFEG-LEEPDAFICNTIM 130

Query: 95  KCYVFNQRSHEALTLFCD-LLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGF 153
           + YV     + AL  + + ++ + + P+++T P ++K    +G+I +G++IH  + K GF
Sbjct: 131 RTYVNVNDPYTALGFYYEQMVRKCVAPNHYTFPLLVKVCWEIGSIGDGEKIHARILKFGF 190

Query: 154 GFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDE 213
             D FV +SL+ MY+  G I   R +F+     DLV+WN +IDGYVK GE+  A +LF+E
Sbjct: 191 ELDLFVRNSLIHMYSVCGRIGDARAMFEVCSISDLVTWNSMIDGYVKNGEIGAARELFEE 250

Query: 214 MPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELF 273
           MP+RDLFSW  ++ G+   G +  A ++F +MP R++VSWN MI+GY +  +++ ACELF
Sbjct: 251 MPERDLFSWNSMIAGYVGNGDMTAAEDLFNKMPFRDIVSWNCMIDGYAQVQNMEIACELF 310

Query: 274 DDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLN 333
           + M  R++++WN M+A Y     + E L + + M+ G+ +PN+ATLVS L+A A L  L+
Sbjct: 311 NWMPYRNVVSWNIMLALYVRIKDYDECLRMFDKMM-GETMPNEATLVSVLTACAHLGRLD 369

Query: 334 KGRWMHSYIVKNGFV-VDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGL 392
           +G+W+HSYI  N  +  D +L T L+ MY+KCG+++ A  VF  +S + V  W +MI+G 
Sbjct: 370 RGKWIHSYIKNNRVIEPDVLLSTALLTMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGY 429

Query: 393 GMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT 452
           GMHG A +AL++F  M + G  P   TFI VL+AC+H+G++ +G  YF++M   Y IEP 
Sbjct: 430 GMHGQADKALEMFLDMEKRGPMPNDATFICVLSACAHSGMILEGWWYFDLMRRAYKIEPK 489

Query: 453 IEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLI 512
           +EHYGC+VD+L R G +++ +  I  MPM     +W +LLS  R H N ++ E  A  LI
Sbjct: 490 VEHYGCMVDLLGRAGLMKDLEELIRKMPMEGGTALWGALLSACRTHSNSELAEIVAKRLI 549

Query: 513 KVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGD 572
           ++ P  IG Y++LSNIYAA G+WD V  VR+MMK+RG  K  G S +     + EF  G 
Sbjct: 550 ELEPRDIGPYLLLSNIYAAEGKWDDVEIVRKMMKERGLTKTTGFSWVH----IEEF--GT 603

Query: 573 KSHPQTDEIHSK------LSEMRNKLK 593
           +S  +   +H K      LS+M  ++K
Sbjct: 604 QSFVEKASVHRKSMMYSILSDMATQMK 630


>gi|15229764|ref|NP_187753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169981|sp|Q9CAY1.1|PP223_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g11460
 gi|12322902|gb|AAG51440.1|AC008153_13 hypothetical protein; 50785-52656 [Arabidopsis thaliana]
 gi|332641528|gb|AEE75049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 233/616 (37%), Positives = 343/616 (55%), Gaps = 29/616 (4%)

Query: 90  YNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVF 149
           +N+ ++   +     E+++L+  +L     PD F+ P ++K  A L     G+Q+H  V 
Sbjct: 21  WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVT 80

Query: 150 KLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVS--WNCLIDGYVKKGEVEVA 207
           K G   + FVL++L+SMY K G +   R+VF+       +S  +N LI GY    +V  A
Sbjct: 81  KGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDA 140

Query: 208 MKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNL-------------VSWN 254
             +F  M +  +      VD  +  G V +     Y    R+L                N
Sbjct: 141 AYMFRRMKETGVS-----VDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLN 195

Query: 255 AMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLP 314
           + I  YMK G V++   LFD+M ++ LITWN++I+GY  NG   + LEL E M    V P
Sbjct: 196 SFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCP 255

Query: 315 NDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVF 374
           +  TLVS LS+ A L     G  +   +  NGFV +  +    I MY++CG++  A  VF
Sbjct: 256 DPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVF 315

Query: 375 RAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVN 434
             +  K +  WTAMI   GMHGM    L LF+ M + G++P    F+ VL+ACSH+GL +
Sbjct: 316 DIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTD 375

Query: 435 DGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG 494
            G   F  M  +Y +EP  EHY CLVD+L R G L+EA   IESMP+ P+  +W +LL  
Sbjct: 376 KGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGA 435

Query: 495 ARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDP 554
            + H N D+ E A   +I+  P+ IG YV++SNIY+ +   + +  +R MM++R FRK P
Sbjct: 436 CKIHKNVDMAELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKP 495

Query: 555 GSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNK-LKAAGHVPDTTQVLLCIEDQKE 613
           G S +EH+G +H F+ GD+SH QT+E+H  L E+    ++ AG++          +  +E
Sbjct: 496 GYSYVEHKGRVHLFLAGDRSHEQTEEVHRMLDELETSVMELAGNMD--------CDRGEE 547

Query: 614 KEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNS 673
             +    HSERLAIAFG++N    + I ++KNLRVC DCH   K +S I +R+ +VRD S
Sbjct: 548 VSSTTREHSERLAIAFGILNSIPGTEILVIKNLRVCEDCHVFLKQVSKIVDRQFVVRDAS 607

Query: 674 RFHHFKNGSCSCKDFW 689
           RFH+FK+G CSCKD+W
Sbjct: 608 RFHYFKDGVCSCKDYW 623



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 127/269 (47%), Gaps = 17/269 (6%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           + LH   VK  L     + +  +++Y+     ++   R +FD  +    L+ +N +I  Y
Sbjct: 176 RSLHGQCVKGGLDSEVAVLNSFITMYMK--CGSVEAGRRLFDE-MPVKGLITWNAVISGY 232

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
             N  +++ L L+  +    + PD FTL  V+   A LGA K G ++  LV   GF  + 
Sbjct: 233 SQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNV 292

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM--- 214
           FV ++ +SMYA+ G +   R VFD M  K LVSW  +I  Y   G  E+ + LFD+M   
Sbjct: 293 FVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKR 352

Query: 215 ---PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS-----WNAMINGYMKAGDV 266
              PD  +F    ++   S  G  +   E+F  M     +      ++ +++   +AG +
Sbjct: 353 GIRPDGAVF--VMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRL 410

Query: 267 DSACELFDDMEIR-DLITWNSMIAGYELN 294
           D A E  + M +  D   W +++   +++
Sbjct: 411 DEAMEFIESMPVEPDGAVWGALLGACKIH 439


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 230/664 (34%), Positives = 376/664 (56%), Gaps = 15/664 (2%)

Query: 36  ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIK 95
           E +Q+H+  +K        +S+ LL  Y      +L  A  +F+ I +  S V +N L+ 
Sbjct: 216 EVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTR--SLGLAFQLFNDIPERDS-VTFNALLT 272

Query: 96  CYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF 155
            Y     + EA+ LF  + +    P  FT   ++    +L  I+ G+Q+HG V K  F +
Sbjct: 273 GYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFVVKCNFVW 332

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP 215
           + FV ++L+  Y+K   +    ++F  M + D +S+N L+  Y   G V+ +++LF E+ 
Sbjct: 333 NVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKESLELFKELQ 392

Query: 216 ----DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS----WNAMINGYMKAGDVD 267
               DR  F +  L+   +    ++I R+I  +    + +S     N++++ Y K G+  
Sbjct: 393 FTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNSLVDMYAKCGEFG 452

Query: 268 SACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVA 327
            A  +F D+ I+  + W +MI+ Y   G   + L+L   M    +  + AT  S + A A
Sbjct: 453 EANRIFSDLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGADAATYASIVRACA 512

Query: 328 GLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTA 387
            LA L  G+ +HS+I+ +G++ +   G+ L+ MY+KCGSI+ AL +F+ +  +    W A
Sbjct: 513 SLASLTLGKQLHSHIIGSGYISNVFSGSALVDMYAKCGSIKDALQMFQEMPVRNSVSWNA 572

Query: 388 MIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDY 447
           +I     +G     L LF +M R G++P +++ + +L ACSH GLV +G +YF+ M   Y
Sbjct: 573 LISAYAQNGDGDCTLRLFEEMVRSGLQPDSVSLLSILCACSHCGLVEEGLQYFDSMTRIY 632

Query: 448 GIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYA 507
            + P  EHY   +D+LCR G  +EA+  +  MP  P+ ++W S+L+    H N+++ + A
Sbjct: 633 KLVPKKEHYASTIDMLCRGGRFDEAEKLMAQMPFEPDEIMWSSVLNSCGIHKNQELAKKA 692

Query: 508 ANNL--IKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVL 565
           AN L  +KV  D    YV +SNIYAAAG+WD V +V++ M++RG +K P  S +E +   
Sbjct: 693 ANQLFNMKVLRDA-APYVTMSNIYAAAGEWDNVGKVKKAMRERGVKKVPAYSWVEIKHKT 751

Query: 566 HEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERL 625
           H F   DK+HPQ  EI  KL E+  K+   G+ PD++  L  ++++ + E+ L+ HSER+
Sbjct: 752 HVFTANDKTHPQMREIMKKLDELEEKMVKKGYKPDSSCALHNVDEEVKVES-LKYHSERI 810

Query: 626 AIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSC 685
           AIAF LI+    SPI ++KNLR C DCH+  K++S I  REI VRD+SRFHHF++G C+C
Sbjct: 811 AIAFALISTPEGSPILVMKNLRACTDCHAAIKVISKIVRREITVRDSSRFHHFRDGFCTC 870

Query: 686 KDFW 689
           +D+W
Sbjct: 871 RDYW 874



 Score =  175 bits (444), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 124/467 (26%), Positives = 227/467 (48%), Gaps = 15/467 (3%)

Query: 70  NLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVI 129
           NL  AR++FD + Q  + V + +LI  Y  N +  EA  LF ++    + PD+ +L  ++
Sbjct: 147 NLSEARTLFDSMFQRTA-VTWTMLIGGYAQNNQFREAFGLFIEMGRHGIDPDHVSLATLL 205

Query: 130 KGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLV 189
            G     ++ E +Q+H  V KLG+     V +SL+  Y K   + L  ++F+ + ++D V
Sbjct: 206 SGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSV 265

Query: 190 SWNCLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRM 245
           ++N L+ GY K+G    A+ LF +M +       F++  ++    +   +E  +++   +
Sbjct: 266 TFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFV 325

Query: 246 PNRNLVSW-----NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEA 300
              N V W     NA+++ Y K   V  A +LF +M   D I++N ++  Y  NGR  E+
Sbjct: 326 VKCNFV-WNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKES 384

Query: 301 LELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQM 360
           LEL + +        +    + LS  A    L+ GR +HS  +    + + ++G  L+ M
Sbjct: 385 LELFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNSLVDM 444

Query: 361 YSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITF 420
           Y+KCG    A  +F  ++ +    WTAMI      G+    L LF +M R  +   A T+
Sbjct: 445 YAKCGEFGEANRIFSDLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGADAATY 504

Query: 421 IGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP 480
             ++ AC+    +  G++  + +I   G    +     LVD+  + G +++A    + MP
Sbjct: 505 ASIVRACASLASLTLGKQLHSHIIGS-GYISNVFSGSALVDMYAKCGSIKDALQMFQEMP 563

Query: 481 MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIK--VAPDTIGCYVVL 525
           +R N V W +L+S    +G+ D        +++  + PD++    +L
Sbjct: 564 VR-NSVSWNALISAYAQNGDGDCTLRLFEEMVRSGLQPDSVSLLSIL 609



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 68/202 (33%), Positives = 108/202 (53%)

Query: 225 LVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITW 284
           LV  F + G +  AR++F  MP++N+ S N MI GY+K+G++  A  LFD M  R  +TW
Sbjct: 107 LVKSFLQRGDLNGARKLFDEMPHKNIFSTNTMIMGYIKSGNLSEARTLFDSMFQRTAVTW 166

Query: 285 NSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVK 344
             +I GY  N +F EA  L   M    + P+  +L + LS       +N+ R +HS+++K
Sbjct: 167 TMLIGGYAQNNQFREAFGLFIEMGRHGIDPDHVSLATLLSGFTEFDSVNEVRQVHSHVIK 226

Query: 345 NGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDL 404
            G+    V+   L+  Y K  S+  A  +F  I ++    + A++ G    G   +A++L
Sbjct: 227 LGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVTFNALLTGYSKEGFNREAINL 286

Query: 405 FNKMCRMGMKPTAITFIGVLNA 426
           F KM  +G +PT  TF  +L A
Sbjct: 287 FFKMQEVGYRPTEFTFAAILTA 308



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 96/420 (22%), Positives = 178/420 (42%), Gaps = 41/420 (9%)

Query: 119 LPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRR 178
           L +N   PC       L A K    +   + K GF  + +  + LV  + + G+++  R+
Sbjct: 63  LMNNIIKPCTRNLVTTLTAPKPHLHVDASIIKTGFNPNTYRSNFLVKSFLQRGDLNGARK 122

Query: 179 VFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIA 238
           +FD M  K++ S N +I GY+K G +  A  LFD M  R   +WT L+ G+++  +   A
Sbjct: 123 LFDEMPHKNIFSTNTMIMGYIKSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREA 182

Query: 239 REIFYRMP---------------------------------------NRNLVSWNAMING 259
             +F  M                                        +  LV  N++++ 
Sbjct: 183 FGLFIEMGRHGIDPDHVSLATLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDS 242

Query: 260 YMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATL 319
           Y K   +  A +LF+D+  RD +T+N+++ GY   G   EA+ L   M      P + T 
Sbjct: 243 YCKTRSLGLAFQLFNDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTF 302

Query: 320 VSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK 379
            + L+A   L  +  G+ +H ++VK  FV +  +   L+  YSK   +  A  +F  + +
Sbjct: 303 AAILTAGIQLDDIEFGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPE 362

Query: 380 KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRY 439
                +  ++     +G   ++L+LF ++   G       F  +L+  + +  ++ GR+ 
Sbjct: 363 VDGISYNVLVTCYAWNGRVKESLELFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQI 422

Query: 440 FNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
            +  I    I   +     LVD+  + G   EA      + ++ + V W +++S     G
Sbjct: 423 HSQTIVTDAISEILVG-NSLVDMYAKCGEFGEANRIFSDLAIQSS-VPWTAMISSYVQKG 480


>gi|345505222|gb|AEN99835.1| chlororespiratory reduction 4, partial [Lepidium sativum]
          Length = 597

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 235/588 (39%), Positives = 336/588 (57%), Gaps = 43/588 (7%)

Query: 26  NILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNL-HYARSIFDR--IL 82
            +L    T  +  ++HA  + T +I +S +++R++  +       L  +AR +F+   + 
Sbjct: 1   QLLGSCKTADDVNKIHARLITTGVIKNSNLTTRIVLAFASSRRQYLAEFARCVFEEHHVY 60

Query: 83  QHP-----SLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGA 137
             P        L+N +IK +        +L LFC +L+  +  D F+L  V+K  +RLG 
Sbjct: 61  SLPYGETEDPFLWNAVIKSHSHGTDPRRSLFLFCLMLENGVSVDKFSLSLVLKACSRLGF 120

Query: 138 IKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDG 197
           +K G  IHG + K G   D F+ + L+ +Y K G +   R+VFD M  +D VS+N +IDG
Sbjct: 121 VKAGMXIHGFLRKTGLWSDLFLQNCLIGLYLKCGCLGYSRQVFDRMPQRDSVSYNSMIDG 180

Query: 198 YVKKGEVE----------------------------------VAMKLFDEMPDRDLFSWT 223
           YVK G +E                                  +A KLF EMP++DL SW 
Sbjct: 181 YVKCGLIESARELFDLMPKEMKNLISWNCLISGYAQTSDGVNIASKLFSEMPEKDLISWN 240

Query: 224 CLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLIT 283
            ++DG+ K G++E A+++F  MP R++++W  MI+GY K G +  A  LFD +  RD++ 
Sbjct: 241 SMIDGYVKHGRIEDAKDLFDVMPRRDVITWATMIDGYAKLGFIHQAKTLFDQIPHRDVVA 300

Query: 284 WNSMIAGYELNGRFMEALELLETMLIGDVL-PNDATLVSALSAVAGLAVLNKGRWMHSYI 342
           +NSM+AGY  N   MEALEL   M     L P++ TLV  LSA+A L  L+K   MH YI
Sbjct: 301 YNSMMAGYVQNKYHMEALELFIKMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHFYI 360

Query: 343 VKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQAL 402
           VK  F + G LG  LI MYSKCGSI+ A+ VF+ +  K + HW A+I GL +HG+   A 
Sbjct: 361 VKKQFFIGGKLGVALIDMYSKCGSIQHAMLVFKGLENKNIDHWNAIIGGLAIHGLGGPAF 420

Query: 403 DLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDI 462
           D+  ++ R+ +KP  ITFIGVLNACSH+GLV +G   F +M   + IEP ++HYGC+VDI
Sbjct: 421 DMLLQIERLSIKPDDITFIGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDI 480

Query: 463 LCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCY 522
           L R+G +E AK  IE MP+ PN VIW + L+   +H   ++GE  A +LI  A      Y
Sbjct: 481 LSRSGSIELAKILIEKMPIEPNDVIWRTFLTACSHHKEFEMGELVAKHLILQAGYNPSSY 540

Query: 523 VVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVV 570
           V+LSN+YA+ G W  V  VR MMK+R  +K PG S IE  G +HEF V
Sbjct: 541 VLLSNMYASCGMWKDVRRVRTMMKERKIQKIPGCSWIELDGRVHEFFV 588


>gi|359495686|ref|XP_003635058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Vitis vinifera]
          Length = 540

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/529 (40%), Positives = 321/529 (60%), Gaps = 13/529 (2%)

Query: 171 GEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTC 224
           G +     +F      +L  WN +I GY        A+ L+ +M      P+   F +  
Sbjct: 15  GHVAYAHCIFSCTHHPNLFMWNTIIRGYSISDSPISAIALYKDMFLCGISPNSYTFGF-- 72

Query: 225 LVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMING----YMKAGDVDSACELFDDMEIRD 280
           +++   K  ++   +E+  ++    L     ++NG    Y   G +D AC +FD+M   D
Sbjct: 73  VLNACCKLLRLCEGQELHSQIVKAGLDFETPLLNGLIKLYAACGCMDYACVMFDEMPEPD 132

Query: 281 LITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHS 340
             +W++M++GY  NG+ +E L+LL  M   +V  +  TL S +     L VL+ G+W+HS
Sbjct: 133 SASWSTMVSGYSQNGQAVETLKLLREMQAENVSSDAFTLASVVGVCGDLGVLDLGKWVHS 192

Query: 341 YIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQ 400
           YI K G  +D VLGT L+ MYSKCGS+++AL VF+ ++++ V  W+ MI G  +HG   +
Sbjct: 193 YIDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTTWSIMIAGYAIHGHDEK 252

Query: 401 ALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLV 460
           AL LF+ M R  + P  +TF  VL+A SH+GLV  G + F  M  +Y I P I+HYGC+V
Sbjct: 253 ALQLFDAMKRSKIIPNCVTFTSVLSAYSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMV 312

Query: 461 DILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIG 520
           D+ CR G +  A   I++MP+ PN V+W +LL   + HG K +GE+ +  ++K+ P +  
Sbjct: 313 DLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHGYKGLGEHISRKILKLDPSSPE 372

Query: 521 CYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDE 580
            YV +SN+YA+ G+W  V +VR +MK++  +K  G SSIE   ++H+F++G++SHP+ ++
Sbjct: 373 NYVFVSNVYASLGRWSSVCQVRSLMKEKAPKKQHGWSSIEINFMVHKFIMGEESHPKREK 432

Query: 581 IHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPI 640
           I+  L +M  KLK  GHV  T  VL  I D++EKE  L  HSERLAIA+GL++  + SPI
Sbjct: 433 IYGMLHQMARKLKQVGHVASTVDVLHDI-DEEEKEYALGLHSERLAIAYGLLHTPNGSPI 491

Query: 641 RIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           RIVKNLR C DCH V KL+S +YNREII+RD   FHHF+   CSC D+W
Sbjct: 492 RIVKNLRACRDCHEVIKLISEVYNREIILRDRVCFHHFRERGCSCNDYW 540



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 144/278 (51%), Gaps = 10/278 (3%)

Query: 66  PHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTL 125
           PH  ++ YA  IF     HP+L ++N +I+ Y  +     A+ L+ D+    + P+++T 
Sbjct: 13  PH-GHVAYAHCIFS-CTHHPNLFMWNTIIRGYSISDSPISAIALYKDMFLCGISPNSYTF 70

Query: 126 PCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD 185
             V+    +L  + EG+++H  + K G  F+  +L+ L+ +YA  G +D    +FD M +
Sbjct: 71  GFVLNACCKLLRLCEGQELHSQIVKAGLDFETPLLNGLIKLYAACGCMDYACVMFDEMPE 130

Query: 186 KDLVSWNCLIDGYVKKGEVEVAMKLFDEMP----DRDLFSWTCLVDGFSKCGKVEIAREI 241
            D  SW+ ++ GY + G+    +KL  EM       D F+   +V      G +++ + +
Sbjct: 131 PDSASWSTMVSGYSQNGQAVETLKLLREMQAENVSSDAFTLASVVGVCGDLGVLDLGKWV 190

Query: 242 FYRMPNR----NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRF 297
              +       ++V   A++  Y K G +D+A ++F  M  RD+ TW+ MIAGY ++G  
Sbjct: 191 HSYIDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTTWSIMIAGYAIHGHD 250

Query: 298 MEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKG 335
            +AL+L + M    ++PN  T  S LSA +   ++ KG
Sbjct: 251 EKALQLFDAMKRSKIIPNCVTFTSVLSAYSHSGLVEKG 288



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 133/270 (49%), Gaps = 13/270 (4%)

Query: 36  ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIK 95
           E Q+LH+  VK  L + + + + L+ LY       + YA  +FD + + P    ++ ++ 
Sbjct: 85  EGQELHSQIVKAGLDFETPLLNGLIKLYAA--CGCMDYACVMFDEMPE-PDSASWSTMVS 141

Query: 96  CYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF 155
            Y  N ++ E L L  ++    +  D FTL  V+     LG +  GK +H  + K G   
Sbjct: 142 GYSQNGQAVETLKLLREMQAENVSSDAFTLASVVGVCGDLGVLDLGKWVHSYIDKEGVKI 201

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP 215
           D  + ++LV MY+K G +D   +VF  M ++D+ +W+ +I GY   G  E A++LFD M 
Sbjct: 202 DVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTTWSIMIAGYAIHGHDEKALQLFDAMK 261

Query: 216 DRDLF----SWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS-----WNAMINGYMKAGDV 266
              +     ++T ++  +S  G VE   +IF  M     ++     +  M++ + +AG V
Sbjct: 262 RSKIIPNCVTFTSVLSAYSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMV 321

Query: 267 DSACELFDDMEIR-DLITWNSMIAGYELNG 295
             A +    M I  +++ W +++   + +G
Sbjct: 322 GHAHKFIQTMPIEPNVVLWRTLLGACKTHG 351


>gi|345505208|gb|AEN99828.1| chlororespiratory reduction 4 [Arabis hirsuta]
          Length = 615

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 234/590 (39%), Positives = 336/590 (56%), Gaps = 47/590 (7%)

Query: 26  NILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNL-HYARSIFDRI--- 81
            +L    T ++  ++HA    T  I ++ +++R++  +     + L  +AR +F      
Sbjct: 19  QLLGTCKTSEDVSKIHARKGTTGFIKNTNLTTRIVLAFAASRRSYLAEFARCVFHEYHVS 78

Query: 82  ------LQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARL 135
                 ++ P   L+N +IK +       +AL LF  +L   +  D F+L  V+K  +RL
Sbjct: 79  SXXSGNVEDP--FLWNAVIKSHSHGVEPRKALLLFFLMLKNGVSVDKFSLSLVLKACSRL 136

Query: 136 GAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLI 195
           G +KEG Q HG + K G   D F+ + L+ +Y K G +   R+VFD M  +D VS+N +I
Sbjct: 137 GFVKEGMQXHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQVFDRMSQRDSVSYNSMI 196

Query: 196 DGYVKKGEVE----------------------------------VAMKLFDEMPDRDLFS 221
           DGYVK G +E                                  +A  LFDEMP++DL S
Sbjct: 197 DGYVKCGLIESARELFDLMPSEKKNLISWNSMINGYAQRADGVDIASNLFDEMPEKDLIS 256

Query: 222 WTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDL 281
           W  L+DG+ K G++E A+++F +MP R++V+W  M++GY K G V  A  LFD M  RD+
Sbjct: 257 WNSLIDGYVKHGRIEDAKDLFDKMPRRDVVTWATMVDGYAKLGFVHQAKSLFDQMPQRDV 316

Query: 282 ITWNSMIAGYELNGRFMEALELLETMLIGDVL-PNDATLVSALSAVAGLAVLNKGRWMHS 340
           + +NSM+AGY  N   MEA+++   M     L P++ TLV  LSA+A L  L+K   MH 
Sbjct: 317 VAYNSMMAGYVQNRYHMEAIDIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHL 376

Query: 341 YIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQ 400
           Y V+  F++ G LG  LI MYSKCGSI+ A+ VF  I  K + HW AMI GL +HG+   
Sbjct: 377 YTVEKKFLLGGKLGVALIDMYSKCGSIQQAMGVFERIENKSIDHWNAMIGGLAIHGLGES 436

Query: 401 ALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLV 460
           A D+  ++ R  +KP  ITF+GVLNACSH+GLV +G   F +M   + IEP ++HYGC+V
Sbjct: 437 AFDMLLQIERRSIKPDDITFVGVLNACSHSGLVKEGLLCFELMKRKHKIEPRLQHYGCMV 496

Query: 461 DILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIG 520
           DIL R+G +E AK+ IE MP+ PN VIW + L+   +H   + GE  A +LI  A     
Sbjct: 497 DILSRSGRIELAKNLIEEMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAGYNPS 556

Query: 521 CYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVV 570
            YV+LSN+YA+ G W +V  VR MMK+R  +K PG S IE  G +HEF V
Sbjct: 557 SYVLLSNMYASLGMWKEVRRVRTMMKERKIQKIPGCSWIELDGSVHEFFV 606


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 233/626 (37%), Positives = 354/626 (56%), Gaps = 14/626 (2%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           AR +FD I     +V +  +I  Y  N    EAL  F  +      P+NFT   V+K   
Sbjct: 100 AREVFDEI-SSKDMVSWTGMIASYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACL 158

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
            L     GK +H  V K  +  D +V   L+ +Y + G+ D   R F  M   D++ W+ 
Sbjct: 159 GLQNFDAGKTVHCSVLKTNYERDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSF 218

Query: 194 LIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPN 247
           +I  + + G+ E A+++F +M      P++  F+++ ++   +    +++++ I      
Sbjct: 219 MISRFAQSGQSEKALEIFCQMRRAFVIPNQ--FTFSSVLQASADIESLDLSKTIHGHALK 276

Query: 248 RNLVS----WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALEL 303
             L +     NA++  Y K G ++ + ELF+ +  R+ ++WN++I  Y   G    AL L
Sbjct: 277 AGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSL 336

Query: 304 LETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSK 363
              ML   V   + T  S L A A LA L  G  +H    K  +  D  +G  LI MY+K
Sbjct: 337 FSNMLRYQVQATEVTYSSILRACATLAALELGLQVHCLTAKTIYGQDVAVGNALIDMYAK 396

Query: 364 CGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGV 423
           CGSI+ A  +F  +  +    W A+I G  MHG+  +A+ +FN M     KP  +TF+GV
Sbjct: 397 CGSIKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNLMKETKCKPDELTFVGV 456

Query: 424 LNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRP 483
           L+ACS+ G +++G++YF  M  DYGIEP +EHY C+V ++ R+G L++A   IE +P  P
Sbjct: 457 LSACSNTGRLDEGKQYFTSMKQDYGIEPCMEHYTCMVWLMGRSGNLDQAVKFIEDIPFEP 516

Query: 484 NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVRE 543
           + +IW +LL     H + ++G  +A  ++++ P     +V+LSNIYA A +W  V+ VR+
Sbjct: 517 SVMIWRALLGACVIHNDVELGRISAQRVLELEPRDEASHVLLSNIYARARRWGNVAYVRK 576

Query: 544 MMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQ 603
            MK++G +K+PG S IE++G +H F V D SH     I+  L  +  K + AG+ P    
Sbjct: 577 HMKRKGVKKEPGLSWIENQGNVHCFTVADTSHADLKLINGMLEFLNMKTRKAGYSPQLNA 636

Query: 604 VLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIY 663
           VLL +ED  EKE  L  HSERLA+AFGL+ + +  PIRI+KNLR+C DCHSV KL+S I 
Sbjct: 637 VLLDVEDD-EKERLLWLHSERLALAFGLVRMPAGCPIRIIKNLRICVDCHSVIKLISKIV 695

Query: 664 NREIIVRDNSRFHHFKNGSCSCKDFW 689
            R+IIVRD +RFHHF+NGSCSC D+W
Sbjct: 696 GRDIIVRDMNRFHHFENGSCSCADYW 721



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 127/483 (26%), Positives = 224/483 (46%), Gaps = 18/483 (3%)

Query: 77  IFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLG 136
           +FD + +  + V +  LI  Y  + +  EA  LF  L       + F    V+K    + 
Sbjct: 2   VFDEMPERNT-VSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSME 60

Query: 137 AIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLID 196
             + G+ +HG V K+G+G + F+ ++L+  Y+  G + + R VFD +  KD+VSW  +I 
Sbjct: 61  WAELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIA 120

Query: 197 GYVKKGEVEVAMKLFDEM------PDRDLFSW---TCLVDGFSKCGKVEIAREIFYRMPN 247
            Y +      A++ F +M      P+   F+     CL       GK  +   +      
Sbjct: 121 SYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKT-VHCSVLKTNYE 179

Query: 248 RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETM 307
           R+L     ++  Y + GD D A   F DM   D+I W+ MI+ +  +G+  +ALE+   M
Sbjct: 180 RDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQM 239

Query: 308 LIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSI 367
               V+PN  T  S L A A +  L+  + +H + +K G   D  +   L+  Y+KCG I
Sbjct: 240 RRAFVIPNQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCI 299

Query: 368 ESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNAC 427
           E ++ +F A+S +    W  +IV     G   +AL LF+ M R  ++ T +T+  +L AC
Sbjct: 300 EQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRAC 359

Query: 428 SHAGLVNDGRRYFNMMIND-YGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFV 486
           +    +  G +   +     YG +  + +   L+D+  + G +++A+   + + +R   V
Sbjct: 360 ATLAALELGLQVHCLTAKTIYGQDVAVGN--ALIDMYAKCGSIKDARFMFDMLDLRDK-V 416

Query: 487 IWMSLLSGARNH--GNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREM 544
            W +++ G   H  G + I  +      K  PD +    VLS   +  G+ D+  +    
Sbjct: 417 SWNAIICGYSMHGLGVEAIKMFNLMKETKCKPDELTFVGVLSAC-SNTGRLDEGKQYFTS 475

Query: 545 MKK 547
           MK+
Sbjct: 476 MKQ 478


>gi|359477376|ref|XP_002280144.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 642

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 237/645 (36%), Positives = 360/645 (55%), Gaps = 68/645 (10%)

Query: 20  PSRLHWNILKFSSTHKETQQLHA-LSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIF 78
           P  LH  I+    T K  + +HA L +++++     + ++LL LY         YA  +F
Sbjct: 3   PPILH--IIHNCKTLKSLKSIHARLLIESSVASSEFVINKLLRLY--SRFGATDYAHKVF 58

Query: 79  DRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAI 138
           D I Q P+  L+  LI  YV N++  EA +LF  +    +   NFT+  V+K  ARL   
Sbjct: 59  DEITQ-PNAYLWTSLIHGYVENRQYDEAFSLFIQMRREPISVLNFTISSVLKALARLTRF 117

Query: 139 KEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGY 198
           K G+ ++G V K GF FD  V +S++ ++ +  ++D  R+ FD M +KD+VSWN +I GY
Sbjct: 118 KGGQAVYGFVLKYGFAFDLIVQNSVLDLFMRCRKVDTARQAFDEMCEKDIVSWNMMISGY 177

Query: 199 -------------------------------VKKGEVEVAMKLFDEMPDRDLFSWTCLVD 227
                                          VK G++  A  LFD MP +DL SW  +V 
Sbjct: 178 GNNDRVDIARKFFDRMPERNVVSWTSMICGYVKAGDMAEAQVLFDSMPVKDLASWNVMVS 237

Query: 228 G-------------------------------FSKCGKVEIAREIFYRMPNRNLVSWNAM 256
           G                               F K G++E A++ F RMPN+N++SW  M
Sbjct: 238 GYMDIGDCVNARIIFGKMPIHDTGSWNIMISGFCKAGELESAKDFFDRMPNKNVISWGIM 297

Query: 257 INGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPND 316
           ++GY+K GD + A  LFD M +++L+TW++MI GY  NG+ ++ALEL E     D+ P++
Sbjct: 298 LDGYIKNGDTNGARCLFDQMPMKNLVTWSTMIGGYARNGQPLKALELFERFKEQDIKPDE 357

Query: 317 ATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRA 376
             ++  +SA + L +++    +    V    + D  + T LI MY+KCGSIE AL +F  
Sbjct: 358 TFILGIISACSQLGIIDAAESIIHNYVGPSLLSDLRVFTSLIDMYAKCGSIEKALQMFEM 417

Query: 377 ISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDG 436
              K +  ++ MI  L  HG+   A+ LF+KM R  +KP ++TF+GVL AC+H GLV++G
Sbjct: 418 AHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQRANIKPDSVTFLGVLTACNHGGLVDEG 477

Query: 437 RRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGAR 496
           R+YF  M  ++GI+P+ +HY C+VD+L R G LEEA + I +MP+ P+ V+W +LL+  R
Sbjct: 478 RKYFKQMTEEFGIQPSEKHYACVVDLLGRVGCLEEAYNLIRNMPIAPHSVVWGALLAACR 537

Query: 497 NHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGS 556
            H N  + E AA  L K+ PD  G Y++LSNIYAAAG+W  V++VR  +++   RK+ GS
Sbjct: 538 VHCNVQLAEVAAAELFKIEPDNSGNYILLSNIYAAAGRWGSVAKVRAKIREHRVRKNRGS 597

Query: 557 SSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDT 601
           S IE   V+HEFV+GD SH  +D I   L  +   +K +G++ D+
Sbjct: 598 SWIELSHVVHEFVMGDMSHTDSDSISLILYLLCEDMKLSGYLIDS 642


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 225/618 (36%), Positives = 344/618 (55%), Gaps = 73/618 (11%)

Query: 112 DLLD-RFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKF 170
           DL+D   L PD      ++K   +LG +KEGK +H  V    F  D  + +SL+ MYA+ 
Sbjct: 63  DLIDCGSLEPDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARC 122

Query: 171 GEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFS 230
                                          G +E A +LFDEMP RD+ SWT ++ G++
Sbjct: 123 -------------------------------GSLEGARRLFDEMPHRDMVSWTSMITGYA 151

Query: 231 KCGKVEIAREIFYRM------PNR---------------------------------NLV 251
           +  +   A  +F RM      PN                                  N+ 
Sbjct: 152 QNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMASYNCGRQIHACCWKYGCHSNVF 211

Query: 252 SWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGD 311
             +++++ Y + G +  A  +FD +  ++ ++WN++IAGY   G   EAL L   M    
Sbjct: 212 VGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIAGYARKGEGEEALALFVRMQREG 271

Query: 312 VLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESAL 371
             P + T  + LS+ + +  L +G+W+H++++K+   + G +G  L+ MY+K GSI  A 
Sbjct: 272 YRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKLVGYVGNTLLHMYAKSGSIRDAE 331

Query: 372 TVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAG 431
            VF  + K  V    +M++G   HG+  +A   F++M R G++P  ITF+ VL ACSHA 
Sbjct: 332 KVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDEMIRFGIEPNDITFLSVLTACSHAR 391

Query: 432 LVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSL 491
           L+++G+ YF +M   Y IEP + HY  +VD+L R G L++AKS IE MP+ P   IW +L
Sbjct: 392 LLDEGKHYFGLM-RKYNIEPKVSHYATIVDLLGRAGLLDQAKSFIEEMPIEPTVAIWGAL 450

Query: 492 LSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFR 551
           L  ++ H N ++G YAA  + ++ P   G + +L+NIYA+AG+W+ V++VR++MK  G +
Sbjct: 451 LGASKMHKNTEMGAYAAQRVFELDPSYPGTHTLLANIYASAGRWEDVAKVRKIMKDSGVK 510

Query: 552 KDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQ 611
           K+P  S +E    +H FV  D +HPQ ++IH    ++  K+K  G+VPDT+ VLL + DQ
Sbjct: 511 KEPACSWVEVENSVHVFVANDVAHPQKEKIHKMWEKLNQKIKEIGYVPDTSHVLLFV-DQ 569

Query: 612 KEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRD 671
           +EKE  L+ HSE+LA++F L+N    S IRI+KN+RVC DCHS  K +S +  REIIVRD
Sbjct: 570 QEKELNLQYHSEKLALSFALLNTPPGSTIRIMKNIRVCGDCHSAIKYVSLVVKREIIVRD 629

Query: 672 NSRFHHFKNGSCSCKDFW 689
            +RFHHF +G CSC D+W
Sbjct: 630 TNRFHHFCDGFCSCGDYW 647



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 111/389 (28%), Positives = 189/389 (48%), Gaps = 16/389 (4%)

Query: 20  PSRLHWNILKFSSTH----KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYAR 75
           P R  +N L    T     KE + +H   + +N  +   I + LL +Y      +L  AR
Sbjct: 72  PDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYA--RCGSLEGAR 129

Query: 76  SIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARL 135
            +FD  + H  +V +  +I  Y  N R+ +AL LF  +L     P+ FTL  ++K    +
Sbjct: 130 RLFDE-MPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYM 188

Query: 136 GAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLI 195
            +   G+QIH   +K G   + FV SSLV MYA+ G +     VFD +  K+ VSWN LI
Sbjct: 189 ASYNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALI 248

Query: 196 DGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRM--PNRN 249
            GY +KGE E A+ LF  M         F+++ L+   S  G +E  + +   +   ++ 
Sbjct: 249 AGYARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQK 308

Query: 250 LVSW--NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETM 307
           LV +  N +++ Y K+G +  A ++FD +   D+++ NSM+ GY  +G   EA +  + M
Sbjct: 309 LVGYVGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDEM 368

Query: 308 LIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSI 367
           +   + PND T +S L+A +   +L++G+     + K            ++ +  + G +
Sbjct: 369 IRFGIEPNDITFLSVLTACSHARLLDEGKHYFGLMRKYNIEPKVSHYATIVDLLGRAGLL 428

Query: 368 ESALTVFRAIS-KKKVGHWTAMIVGLGMH 395
           + A +    +  +  V  W A++    MH
Sbjct: 429 DQAKSFIEEMPIEPTVAIWGALLGASKMH 457



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 97/203 (47%), Gaps = 2/203 (0%)

Query: 300 ALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQ 359
            L +L+ +  G + P+     + L     L  L +G+ +H +++ + F  D V+   L+ 
Sbjct: 58  GLHVLDLIDCGSLEPDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLF 117

Query: 360 MYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAIT 419
           MY++CGS+E A  +F  +  + +  WT+MI G   +  A+ AL LF +M   G +P   T
Sbjct: 118 MYARCGSLEGARRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFT 177

Query: 420 FIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM 479
              ++  C +    N GR+  +     YG    +     LVD+  R GYL EA    + +
Sbjct: 178 LSSLVKCCGYMASYNCGRQ-IHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKL 236

Query: 480 PMRPNFVIWMSLLSGARNHGNKD 502
             + N V W +L++G    G  +
Sbjct: 237 GCK-NEVSWNALIAGYARKGEGE 258


>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Cucumis sativus]
          Length = 679

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 227/613 (37%), Positives = 336/613 (54%), Gaps = 44/613 (7%)

Query: 120 PDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRV 179
           P   +   V +    L  +K G Q+H  +   G      V S +V+ YA  G+ID    V
Sbjct: 68  PPILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSV 127

Query: 180 FDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------------P------------ 215
           F+ + +   + +N +I  Y + G  E  +  +  M            P            
Sbjct: 128 FNGIGEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSV 187

Query: 216 ---------------DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGY 260
                            DL+  T L+  + KCG++  A ++F  M  R++ SWNA++ GY
Sbjct: 188 WMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGY 247

Query: 261 MKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGD--VLPNDAT 318
            K+G +D+A  +F+ M  R++++W +MI+GY  +G   +AL L + M+  D  V PN  T
Sbjct: 248 TKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVT 307

Query: 319 LVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS 378
           ++S L A A L+ L +GR +H    + G   +  +   L  MY+KCGS+  A   F  ++
Sbjct: 308 IMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLN 367

Query: 379 K--KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDG 436
           +  K +  W  MI     +G   QA+  F +M + G++P  ITF G+L+ CSH+GLV+ G
Sbjct: 368 RNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVG 427

Query: 437 RRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGAR 496
            +YFN M   Y I P +EHY C+ D+L R G L EA   +  MPM     IW SLL+  R
Sbjct: 428 LKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACR 487

Query: 497 NHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGS 556
            H N ++ E AA  L  + P+  G YV+LSN+YA AG+W +V ++R ++K +G +K PG 
Sbjct: 488 KHRNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGC 547

Query: 557 SSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEA 616
           S IE  G  H F+ GD SHPQ  EI+  L  +  K+KAAG+ PDT+ VL  I ++ EKE 
Sbjct: 548 SWIEINGKAHMFLGGDTSHPQGKEIYMFLEALPEKMKAAGYFPDTSYVLHDISEE-EKEF 606

Query: 617 ELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFH 676
            L  HSE+LA+AFG++N  + + +R+ KNLR+C DCH+    +S IY RE+IVRD +RFH
Sbjct: 607 NLIAHSEKLAVAFGILNTPAETVLRVTKNLRICGDCHTAMVFISEIYGREVIVRDINRFH 666

Query: 677 HFKNGSCSCKDFW 689
           HFK G CSC D+W
Sbjct: 667 HFKGGCCSCGDYW 679



 Score =  142 bits (357), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 159/344 (46%), Gaps = 46/344 (13%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           K   Q+HA  +   L   + + S++++ Y      ++  + S+F+ I + PS +L+N +I
Sbjct: 87  KLGHQVHAHMLLRGLQPTALVGSKMVAFYASS--GDIDSSVSVFNGIGE-PSSLLFNSMI 143

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
           + Y     +   +  +  +       D FT P V+K +  L ++  GK +HGL+ ++G  
Sbjct: 144 RAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQ 203

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
           FD +V +SL+ +Y K GEI+   +VFD M  +D+ SWN L+ GY K G ++ A+ +F+ M
Sbjct: 204 FDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERM 263

Query: 215 PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMP---------------------------- 246
           P R++ SWT ++ G+S+ G  + A  +F  M                             
Sbjct: 264 PWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLER 323

Query: 247 -------------NRNLVSWNAMINGYMKAGDVDSACELFDDMEI--RDLITWNSMIAGY 291
                        N N     A+   Y K G +  A   FD +    ++LI WN+MI  Y
Sbjct: 324 GRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAY 383

Query: 292 ELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKG 335
              G  ++A+     M+   + P+D T    LS  +   +++ G
Sbjct: 384 ASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVG 427


>gi|297848224|ref|XP_002891993.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337835|gb|EFH68252.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 950

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 228/655 (34%), Positives = 372/655 (56%), Gaps = 17/655 (2%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           +E +Q+     + N++  +G    L+S Y+   +  +  AR++F+ I+   ++V +  ++
Sbjct: 65  REARQMFDEMPERNIVSWNG----LVSGYIKNRM--IEEARNVFE-IMPERNVVSWTAMV 117

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
           K YV      EA  LF  + +R    +  +   +  G    G I + ++++ ++     G
Sbjct: 118 KGYVQEGMVVEAELLFWRMPER----NEVSWTVMFGGLIDGGRIDDARKLYDMMP----G 169

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
            D    ++++    + G +D  R +FD M ++++++W  +I GY +   V+VA KLF+ M
Sbjct: 170 KDVVASTNMIGGLCREGRVDEAREIFDEMRERNVITWTTMITGYGQNKRVDVARKLFEVM 229

Query: 215 PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFD 274
           P++   SWT ++ G++  G++E A E F  MP + +++ NAMI    + G++  A  +FD
Sbjct: 230 PEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVALGEVGEIVKARRVFD 289

Query: 275 DMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNK 334
            ME RD  TW  MI  YE  G  +EALEL   M    V P+  +L+S LS  A LA L  
Sbjct: 290 QMEDRDNATWRGMIKAYERKGFELEALELFAQMQRQGVRPSFPSLISILSVCATLASLQY 349

Query: 335 GRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGM 394
           GR +H+++V+  F  D  + ++L+ MY KCG +  A  VF     K +  W ++I G   
Sbjct: 350 GRQVHAHLVRCQFDGDVYVASVLMTMYVKCGELVKAKLVFDRFPSKDIIMWNSIISGYAS 409

Query: 395 HGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIE 454
           HG+  +AL +F++M   G  P  +T I +L ACS+ G + +G   F  M + + + PT+E
Sbjct: 410 HGLGEEALKVFHEMPLSGTMPNKVTLIAILTACSYGGKLEEGLEIFESMESKFCVTPTVE 469

Query: 455 HYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKV 514
           HY C VD+L R G +++A   I SM ++P+  +W +LL   + H   D+ E AA  L ++
Sbjct: 470 HYSCTVDMLGRAGKVDKAMELINSMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFEI 529

Query: 515 APDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGD-K 573
            P+  G Y++LS+I A+  +W  V+E+R+ M+ +   K PG S IE    +H F  G  +
Sbjct: 530 EPENAGPYILLSSINASRSKWGDVAEMRKNMRTKNVSKFPGCSWIEVGKKVHMFTRGGIR 589

Query: 574 SHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLIN 633
           +HP+   I   L +    L+ AG+ PD + VL  + D++EK   L  HSERLA+A+GL+ 
Sbjct: 590 NHPEQAMILMMLEKTDGLLREAGYSPDCSHVLHDV-DEEEKVDSLSRHSERLAVAYGLLK 648

Query: 634 VKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDF 688
           +    PIR++KNLRVC DCH+  KL+S +  REII+RD +RFHHF NG CSC+D+
Sbjct: 649 LPEGVPIRVMKNLRVCGDCHAAIKLISKVTEREIILRDANRFHHFNNGECSCRDY 703



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 116/407 (28%), Positives = 188/407 (46%), Gaps = 50/407 (12%)

Query: 133 ARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWN 192
           +R+G I E ++    +     G      +S+VS Y   G     R++FD M ++++VSWN
Sbjct: 28  SRIGQINEARKFFDSLRYKAIG----SWNSIVSGYFANGLPREARQMFDEMPERNIVSWN 83

Query: 193 CLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS 252
            L+ GY+K   +E A  +F+ MP+R++ SWT +V G+ + G V  A  +F+RMP RN VS
Sbjct: 84  GLVSGYIKNRMIEEARNVFEIMPERNVVSWTAMVKGYVQEGMVVEAELLFWRMPERNEVS 143

Query: 253 WNA-------------------------------MINGYMKAGDVDSACELFDDMEIRDL 281
           W                                 MI G  + G VD A E+FD+M  R++
Sbjct: 144 WTVMFGGLIDGGRIDDARKLYDMMPGKDVVASTNMIGGLCREGRVDEAREIFDEMRERNV 203

Query: 282 ITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSY 341
           ITW +MI GY  N R   A +L E M        + T VS  S + G  +   GR   + 
Sbjct: 204 ITWTTMITGYGQNKRVDVARKLFEVM-------PEKTEVSWTSMLLGYTL--SGRIEDAE 254

Query: 342 IVKNGFVVDGVLG-TLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQ 400
                  +  V+    +I    + G I  A  VF  +  +    W  MI      G   +
Sbjct: 255 EFFEVMPMKPVIACNAMIVALGEVGEIVKARRVFDQMEDRDNATWRGMIKAYERKGFELE 314

Query: 401 ALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLV 460
           AL+LF +M R G++P+  + I +L+ C+    +  GR+    ++     +  +     L+
Sbjct: 315 ALELFAQMQRQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVR-CQFDGDVYVASVLM 373

Query: 461 DILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYA 507
            +  + G L +AK   +  P + + ++W S++SG  +HG   +GE A
Sbjct: 374 TMYVKCGELVKAKLVFDRFPSK-DIIMWNSIISGYASHG---LGEEA 416


>gi|357484833|ref|XP_003612704.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514039|gb|AES95662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 572

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/563 (40%), Positives = 354/563 (62%), Gaps = 12/563 (2%)

Query: 138 IKEGKQIHGLVFKLGFGFDKFVLSSLVSMYA--KFGEIDLGRRVFDAMDDKDLVSWNCLI 195
           ++E KQ+H  V K G  FD F +S+LV+  A  K+G +D    +F  +D+     +N +I
Sbjct: 11  MEEFKQVHAHVLKCGIFFDTFCMSNLVATCALTKWGSMDYACSIFTQIDEPSSFDYNTMI 70

Query: 196 DGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKV----EIAREIFYRMPN 247
            G V   ++E A+ L+ +M +R    D F++  ++   S  G V    ++   +F     
Sbjct: 71  RGNVNDMKLEEALLLYVDMIERGVEPDKFTYPFVLKACSLLGVVDEGIQVHGHVFKMGLE 130

Query: 248 RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETM 307
            +++  N++IN Y K G++ +AC++F+ M+ + + +W+++I  +     + E L LL  M
Sbjct: 131 GDVIVQNSLINMYGKCGEIKNACDVFNGMDEKSVASWSAIIGAHACVEMWNECLMLLGKM 190

Query: 308 LI-GDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGS 366
              G     ++TLV+ LSA   L   + G+ +H  +++N   ++ V+ T LI MY K G 
Sbjct: 191 SSEGRCRVEESTLVNVLSACTHLGSPDLGKCIHGILLRNISELNVVVKTSLIDMYVKSGC 250

Query: 367 IESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNA 426
           +E  L VF+ +S+K    +T MI GL +HG   +AL +F++M   G+ P  + ++GV +A
Sbjct: 251 LEKGLRVFKNMSEKNRYSYTVMISGLAIHGRGKEALKVFSEMIEEGLAPDDVVYVGVFSA 310

Query: 427 CSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFV 486
           CSHAGLV +G + F  M  ++ IEPT++HYGC+VD+L R G L+EA   I+SM ++PN V
Sbjct: 311 CSHAGLVEEGLQCFKSMQFEHKIEPTVQHYGCMVDLLGRFGMLKEAYELIKSMSIKPNDV 370

Query: 487 IWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMK 546
           IW SLLS  + H N +IG+ AA NL  +  +  G Y+VL+N+YA A +WD V+++R  + 
Sbjct: 371 IWRSLLSACKVHHNLEIGKIAAENLFMLNQNNSGDYLVLANMYAKAQKWDDVAKIRTKLA 430

Query: 547 KRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLL 606
           +R   + PG S IE +  +++FV  DKS PQ + I+  + +M  +LK  G++PDT+QVLL
Sbjct: 431 ERNLVQTPGFSLIEAKRKVYKFVSQDKSIPQWNIIYEMIHQMEWQLKFEGYIPDTSQVLL 490

Query: 607 CIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNRE 666
            ++D+++KE  L+ HS++LAIAFGLI+    SP+RI +NLR+C+DCH+ TK +S IY RE
Sbjct: 491 DVDDEEKKE-RLKFHSQKLAIAFGLIHTSEGSPLRITRNLRMCSDCHTYTKYISMIYERE 549

Query: 667 IIVRDNSRFHHFKNGSCSCKDFW 689
           I VRD  RFHHFKNGSCSCKD+W
Sbjct: 550 ITVRDRLRFHHFKNGSCSCKDYW 572



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 112/407 (27%), Positives = 191/407 (46%), Gaps = 53/407 (13%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           +E +Q+HA  +K  + + +   S L++        ++ YA SIF +I   PS   YN +I
Sbjct: 12  EEFKQVHAHVLKCGIFFDTFCMSNLVATCALTKWGSMDYACSIFTQI-DEPSSFDYNTMI 70

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
           +  V + +  EAL L+ D+++R + PD FT P V+K  + LG + EG Q+HG VFK+G  
Sbjct: 71  RGNVNDMKLEEALLLYVDMIERGVEPDKFTYPFVLKACSLLGVVDEGIQVHGHVFKMGLE 130

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
            D  V +SL++MY K GEI     VF+ MD+K + SW+ +I  +         + L  +M
Sbjct: 131 GDVIVQNSLINMYGKCGEIKNACDVFNGMDEKSVASWSAIIGAHACVEMWNECLMLLGKM 190

Query: 215 PD--RDLFSWTCLVDGFSKC---GKVEIAREI----FYRMPNRNLVSWNAMINGYMKAGD 265
               R     + LV+  S C   G  ++ + I       +   N+V   ++I+ Y+K+G 
Sbjct: 191 SSEGRCRVEESTLVNVLSACTHLGSPDLGKCIHGILLRNISELNVVVKTSLIDMYVKSGC 250

Query: 266 VDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSA 325
           ++    +F +M  ++  ++  MI+G  ++GR  EAL++   M+   + P+D   V   SA
Sbjct: 251 LEKGLRVFKNMSEKNRYSYTVMISGLAIHGRGKEALKVFSEMIEEGLAPDDVVYVGVFSA 310

Query: 326 VAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS-----KK 380
                                               S  G +E  L  F+++      + 
Sbjct: 311 C-----------------------------------SHAGLVEEGLQCFKSMQFEHKIEP 335

Query: 381 KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNAC 427
            V H+  M+  LG  GM  +A +L      M +KP  + +  +L+AC
Sbjct: 336 TVQHYGCMVDLLGRFGMLKEAYELIKS---MSIKPNDVIWRSLLSAC 379


>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
          Length = 644

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 224/568 (39%), Positives = 335/568 (58%), Gaps = 38/568 (6%)

Query: 36  ETQQLHALSVKTNLIYHS-GISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           + + LHA  ++T        + ++L+S+YV   + +L  AR +FD  +   ++V +  +I
Sbjct: 82  DAKLLHAHMIQTQFECQDISLGNKLVSIYV--KLGSLVEARRVFDE-MPVKNVVSWTAMI 138

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
             Y  ++   EAL  F ++ D  + P++FT   ++     L  + E    H  + K GF 
Sbjct: 139 AAYARHEHGQEALGFFYEMQDVGIQPNHFTFASILPACTDLEVLGE---FHDEIVKGGFE 195

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
            + FV + LV MYAK G I+  R +FD M  +D+VSWN +I GYV+ G +E A+KLF E+
Sbjct: 196 SNVFVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEI 255

Query: 215 PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFD 274
           P RD+ +W  ++ G+++CG VE A E+F +MP +NLVSWN MI GY++ G V  A +LF 
Sbjct: 256 PKRDVITWNTMMAGYAQCGDVENAVELFEKMPEQNLVSWNTMIAGYVQNGSVKEAFKLFQ 315

Query: 275 DMEIRDLITWNSMIAGYELNGRFMEALELLETM--------------------------L 308
            M  R++I+WN++I+G+  NG+  EAL+L +TM                          L
Sbjct: 316 IMPERNVISWNAVISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKL 375

Query: 309 IG-----DVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSK 363
            G     D+ PN  T    L A A LAVL +G   H  ++++GF  D ++G  L+ MY+K
Sbjct: 376 FGQMQMVDMKPNTETFAIVLPACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAK 435

Query: 364 CGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGV 423
           CGSIE A  VF  + ++     +AMIVG  ++G + ++L+LF +M   G+KP  +TF+GV
Sbjct: 436 CGSIEDARKVFDRMRQQDSASLSAMIVGYAINGCSKESLELFEQMQFTGLKPDRVTFVGV 495

Query: 424 LNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRP 483
           L+AC HAGLV++GR+YF++M   Y I P +EHYGC++D+L R G  +EA   I  MP++P
Sbjct: 496 LSACCHAGLVDEGRQYFDIMTRFYHITPAMEHYGCMIDLLGRAGCFDEANDLINKMPIKP 555

Query: 484 NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVRE 543
           +  +W SLLS  R H N D+GE  A +LI + P     YV+LSNIYAAAG+WD +  VR 
Sbjct: 556 DADMWGSLLSACRTHNNIDLGEKVAQHLIALNPQNPAPYVLLSNIYAAAGRWDDIGSVRN 615

Query: 544 MMKKRGFRKDPGSSSIEHRGVLHEFVVG 571
            MK R  +K  G S I  +  +H F+VG
Sbjct: 616 RMKDRKVKKKLGCSWIVIKKQVHAFLVG 643



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 122/467 (26%), Positives = 214/467 (45%), Gaps = 37/467 (7%)

Query: 93  LIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLG 152
           L+K      R  EAL +  D+++  + P + T   +++G     ++ + K +H  + +  
Sbjct: 35  LVKSLCKQGRLREALHILQDMVENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQTQ 94

Query: 153 FGFDKFVLSS-LVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLF 211
           F      L + LVS+Y K G +   RRVFD M  K++VSW  +I  Y +    + A+  F
Sbjct: 95  FECQDISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFF 154

Query: 212 DEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMP----NRNLVSWNAMINGYMKA 263
            EM D  +    F++  ++     C  +E+  E    +       N+   N +++ Y K 
Sbjct: 155 YEMQDVGIQPNHFTFASILPA---CTDLEVLGEFHDEIVKGGFESNVFVGNGLVDMYAKR 211

Query: 264 GDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLV--- 320
           G ++ A ELFD M  RD+++WN+MIAGY  NG   +AL+L + +   DV+  +  +    
Sbjct: 212 GCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIPKRDVITWNTMMAGYA 271

Query: 321 ------SALSAVAGLAVLNKGRW--MHSYIVKNGFVVDG------------VLGTLLIQM 360
                 +A+     +   N   W  M +  V+NG V +             +    +I  
Sbjct: 272 QCGDVENAVELFEKMPEQNLVSWNTMIAGYVQNGSVKEAFKLFQIMPERNVISWNAVISG 331

Query: 361 YSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITF 420
           +++ G +E AL +F+ + +  V  W AMI G   +G A  AL LF +M  + MKP   TF
Sbjct: 332 FAQNGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPNTETF 391

Query: 421 IGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP 480
             VL AC+   ++  G     ++I   G +  +     LV +  + G +E+A+   + M 
Sbjct: 392 AIVLPACAALAVLEQGNEAHEVVIRS-GFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMR 450

Query: 481 MRPNFVIWMSLLSGARNHGNKDIGE-YAANNLIKVAPDTIGCYVVLS 526
            + +  +   ++  A N  +K+  E +       + PD +    VLS
Sbjct: 451 QQDSASLSAMIVGYAINGCSKESLELFEQMQFTGLKPDRVTFVGVLS 497


>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
 gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
          Length = 582

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 231/585 (39%), Positives = 332/585 (56%), Gaps = 25/585 (4%)

Query: 120 PDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRV 179
           P+ FT P  IK  A L     GKQ+H  VFK G   + FV +SL+SMY K   ID  R++
Sbjct: 8   PNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSLIDNARKL 67

Query: 180 FD--AMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL---------FSWTCLVDG 228
           FD      K  V +N L+ GY     V+  + LF EM +  +             C + G
Sbjct: 68  FDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLVQPCGIPG 127

Query: 229 FSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMI 288
               G       + + +   + V  N ++  Y+K+G++D   +LFD+M  + LITWN+MI
Sbjct: 128 NLGLGMCVHGFCVKFGLDMDSSVG-NCLLTMYVKSGEIDCGRKLFDEMPRKGLITWNAMI 186

Query: 289 AGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFV 348
            GY  NG     LEL + M      P+  TLV  LS+ A L  L+ G+ +   +   GF 
Sbjct: 187 NGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKEVERKMEGFGFS 246

Query: 349 VDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKM 408
            +  L   L+ MY++CG+++ A  +F  +  K V  WTA+I G GMHG    A+ LF++M
Sbjct: 247 SNPFLNNALVNMYARCGNLKKARDIFDGMPVKSVVSWTAIIGGYGMHGQGEVAVGLFDEM 306

Query: 409 CRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGY 468
            R G+KP    F+ VL+ACSHAGL N G  YF +M   YG+ P  EHY C+VD+L R G 
Sbjct: 307 IRGGIKPDGTAFVSVLSACSHAGLTNKGLDYFGVMERKYGLRPGAEHYSCMVDLLGRAGR 366

Query: 469 LEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNI 528
           L EA+  IESM +R +  +W +LL   + H N ++ E A   +I++ P   G YV+LSN+
Sbjct: 367 LNEARELIESMQVRADGALWGALLGACKIHRNVELAELAFEQVIELEPTNTGYYVLLSNV 426

Query: 529 YAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEM 588
           Y  AG  + +  VR +M+KR  +KDPG S +E +G +H F  GD++HPQT+EI+ KL+E+
Sbjct: 427 YTEAGNLEGILRVRMLMRKRKLKKDPGCSYVEFKGRVHLFFAGDRNHPQTNEIYKKLNEL 486

Query: 589 RNKLKAAGHVPDTTQVLLCIEDQKEKEAELEN----HSERLAIAFGLINVKSRSPIRIVK 644
            N +K          +  C ++  E+  E  N    HSE+LA+AF L+N +  + I I+K
Sbjct: 487 ENLVK---------DLDGCKKNDHERREEYLNSMGVHSEKLAVAFALLNTRKETEIIIIK 537

Query: 645 NLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           NLR+C DCH   KL+S I +R+ +VRD +RFHHFKNG CSCK++W
Sbjct: 538 NLRICGDCHLFIKLVSKIVDRQFVVRDATRFHHFKNGFCSCKEYW 582



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 89/307 (28%), Positives = 159/307 (51%), Gaps = 11/307 (3%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSL-VLYNLLIKC 96
           +QLH    KT  +    + + L+S+Y    +  +  AR +FD   Q   L V YN L+  
Sbjct: 30  KQLHCHVFKTGCLLEPFVQTSLISMYGKCSL--IDNARKLFDENPQSRKLTVCYNSLLSG 87

Query: 97  YVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFD 156
           Y  N R  + + LFC++ +  +  +  T+  +++     G +  G  +HG   K G   D
Sbjct: 88  YALNSRVKDVVVLFCEMRELGVEINGVTMLGLVQPCGIPGNLGLGMCVHGFCVKFGLDMD 147

Query: 157 KFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD 216
             V + L++MY K GEID GR++FD M  K L++WN +I+GY + G     ++L+ EM  
Sbjct: 148 SSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGLITWNAMINGYAQNGLANNVLELYKEMES 207

Query: 217 R----DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS----WNAMINGYMKAGDVDS 268
           +    D  +   ++   +  G + + +E+  +M      S     NA++N Y + G++  
Sbjct: 208 KGFCPDPLTLVGVLSSCAHLGALSVGKEVERKMEGFGFSSNPFLNNALVNMYARCGNLKK 267

Query: 269 ACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAG 328
           A ++FD M ++ +++W ++I GY ++G+   A+ L + M+ G + P+    VS LSA + 
Sbjct: 268 ARDIFDGMPVKSVVSWTAIIGGYGMHGQGEVAVGLFDEMIRGGIKPDGTAFVSVLSACSH 327

Query: 329 LAVLNKG 335
             + NKG
Sbjct: 328 AGLTNKG 334



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/299 (28%), Positives = 144/299 (48%), Gaps = 19/299 (6%)

Query: 40  LHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVF 99
           +H   VK  L   S + + LL++YV      +   R +FD  +    L+ +N +I  Y  
Sbjct: 135 VHGFCVKFGLDMDSSVGNCLLTMYVKS--GEIDCGRKLFDE-MPRKGLITWNAMINGYAQ 191

Query: 100 NQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFV 159
           N  ++  L L+ ++  +   PD  TL  V+   A LGA+  GK++   +   GF  + F+
Sbjct: 192 NGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKEVERKMEGFGFSSNPFL 251

Query: 160 LSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM----- 214
            ++LV+MYA+ G +   R +FD M  K +VSW  +I GY   G+ EVA+ LFDEM     
Sbjct: 252 NNALVNMYARCGNLKKARDIFDGMPVKSVVSWTAIIGGYGMHGQGEVAVGLFDEMIRGGI 311

Query: 215 -PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR-----NLVSWNAMINGYMKAGDVDS 268
            PD   F    ++   S  G      + F  M  +         ++ M++   +AG ++ 
Sbjct: 312 KPDGTAF--VSVLSACSHAGLTNKGLDYFGVMERKYGLRPGAEHYSCMVDLLGRAGRLNE 369

Query: 269 ACELFDDMEIR-DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326
           A EL + M++R D   W +++   +++ R +E  EL    +I ++ P +      LS V
Sbjct: 370 ARELIESMQVRADGALWGALLGACKIH-RNVELAELAFEQVI-ELEPTNTGYYVLLSNV 426



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 114/252 (45%), Gaps = 7/252 (2%)

Query: 307 MLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGS 366
           ML     PN  T   A+ + A L++   G+ +H ++ K G +++  + T LI MY KC  
Sbjct: 1   MLRSGASPNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSL 60

Query: 367 IESALTVF--RAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVL 424
           I++A  +F     S+K    + +++ G  ++      + LF +M  +G++   +T +G++
Sbjct: 61  IDNARKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLV 120

Query: 425 NACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPN 484
             C   G +  G       +  +G++       CL+ +  ++G ++  +   + MP R  
Sbjct: 121 QPCGIPGNLGLGMCVHGFCVK-FGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMP-RKG 178

Query: 485 FVIWMSLLSGARNHG--NKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVR 542
            + W ++++G   +G  N  +  Y         PD +    VLS+  A  G      EV 
Sbjct: 179 LITWNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSC-AHLGALSVGKEVE 237

Query: 543 EMMKKRGFRKDP 554
             M+  GF  +P
Sbjct: 238 RKMEGFGFSSNP 249


>gi|449531466|ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like, partial [Cucumis sativus]
          Length = 610

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 225/596 (37%), Positives = 344/596 (57%), Gaps = 9/596 (1%)

Query: 11  PIHALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINN 70
           P   L++H  S     +L+   T    Q++ A  +     Y+  ++  +++ +V   +  
Sbjct: 20  PRWVLEEHFIS-----LLRSCKTVALLQKVQAQIITHGFQYNGYVAPNVVTSWVG--LKQ 72

Query: 71  LHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIK 130
           + +AR +FD     P + L+N + + Y  N    E + LF  +    + P+ FT P V+K
Sbjct: 73  MAHARHLFDH-FPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLK 131

Query: 131 GAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVS 190
             A++GA  EG++IH  V K G   ++FV ++L+ +Y+    I    ++F  M ++++V+
Sbjct: 132 SCAKIGAFVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVA 191

Query: 191 WNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNL 250
           W  +I GY+    V +A +LFD  P+RD+  W  +V G+ + G ++ AR++F  MP R+ 
Sbjct: 192 WTSMISGYILCNRVALARRLFDLAPERDVVLWNIMVSGYIEIGDMKAARKLFDTMPYRDT 251

Query: 251 VSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLI- 309
           +SWN M+NGY   GDV++  +LF++M  R++ +WN +I GY  NG F E L   + MLI 
Sbjct: 252 MSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLID 311

Query: 310 GDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIES 369
           G V+PNDATLV+ LSA A L  L+ G+W+H Y    GF     +G  LI MYSKCG IE+
Sbjct: 312 GLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYSKCGLIEN 371

Query: 370 ALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSH 429
           A+ VF ++  K +  W +MI GL  HG    AL LF++M   G KP  ITFIGVL +C+H
Sbjct: 372 AMEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITFIGVLCSCTH 431

Query: 430 AGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWM 489
            GLV +G  YFN M+N+Y I P IEHYGC+VD+  R G L+ A   ++ MPM  + VIW 
Sbjct: 432 LGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWA 491

Query: 490 SLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRG 549
           +LL   R + N D+ E A   LI + P     YV+LSNIY   G+W  V+ ++ +M+  G
Sbjct: 492 ALLGACRIYKNIDLAELALQKLIVLEPKNPANYVLLSNIYGDLGRWKDVARLKILMRDTG 551

Query: 550 FRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVL 605
            +K PG S IE    + EF   D+ H Q+ EI+  L  +   L++ G+ P+  ++L
Sbjct: 552 SKKLPGCSLIEVNDSVVEFYSLDERHSQSKEIYGVLKGLMKLLRSFGYGPNMMELL 607


>gi|297738270|emb|CBI27471.3| unnamed protein product [Vitis vinifera]
          Length = 574

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 227/566 (40%), Positives = 339/566 (59%), Gaps = 28/566 (4%)

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAK--FGEIDLGRRVFDAMDDKDLVSW 191
           R   ++E +QIHG + K G   D+   S L++  A    G +   R VFD +   +   W
Sbjct: 27  RCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMW 86

Query: 192 NCLIDGYVKKGEVEVAMKLFDEM----PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPN 247
           N +I GY    E E A+ L+  M       + +++  L+   S    +E  ++I   +  
Sbjct: 87  NTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHIIK 146

Query: 248 ----RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALEL 303
                 + + N+++N Y K+GD+ SA  LFD ++ RD                  EAL L
Sbjct: 147 MGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRD-----------------TEALNL 189

Query: 304 LETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSK 363
              M    +  ++  LVS L A A L VL++G+W+H+YI K+   +D +LG +LI MY+K
Sbjct: 190 FHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAK 249

Query: 364 CGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGV 423
           CG +E A+ VFR + +K V  WTAMI G  +HG   +AL+ F KM   G++P  +TF G+
Sbjct: 250 CGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGI 309

Query: 424 LNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRP 483
           L ACSHAGLV++ +  F  M   +G +P+IEHYGC+VD+L R G L+EA+  IE+MP++P
Sbjct: 310 LTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKP 369

Query: 484 NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVRE 543
           N  IW +LL+    HGN ++G+     LI+V P   G Y+ L++I+AAAG+W++ + VR 
Sbjct: 370 NAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRR 429

Query: 544 MMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQ 603
            MK++G  K PG S I   G  HEF+ GD+SHPQ  EI   L ++  +L+  G+ P    
Sbjct: 430 QMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQIKEIDHMLEQIVERLREEGYKPKLGD 489

Query: 604 VLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIY 663
           +LL +ED++++ A + +HSE+LA+ FGLI+ K    IRIVKNLRVC DCH+V KL+S +Y
Sbjct: 490 LLLDLEDKEKETA-IHHHSEKLAVTFGLISTKPGMTIRIVKNLRVCEDCHTVIKLISKVY 548

Query: 664 NREIIVRDNSRFHHFKNGSCSCKDFW 689
            REI++RD +RFH FK+G+C+C D+W
Sbjct: 549 AREILMRDRTRFHLFKDGNCTCGDYW 574



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 120/477 (25%), Positives = 207/477 (43%), Gaps = 118/477 (24%)

Query: 3   TQTLQHSSPIHALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSL 62
           T T Q SS  +A Q      LH  +L+  S  +E +Q+H   +KT LI     +S+LL+ 
Sbjct: 7   TPTSQLSSESNAAQT-----LH--LLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAF 59

Query: 63  YVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDN 122
              P+  +L YAR++FDRI + P+  ++N +I+ Y  ++   EAL L+  +L   +  + 
Sbjct: 60  CASPNSGSLAYARTVFDRIFR-PNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNA 118

Query: 123 FTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDA 182
           +T P ++K  + + A++E +QIH  + K+GFG + +  +SL+++Y+K G+I   R +FD 
Sbjct: 119 YTFPFLLKACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQ 178

Query: 183 MDDKDLVSWNCL---------------------------------IDGYVKKGEVEVAMK 209
           +D +D  + N                                   I  Y+KK E+E+   
Sbjct: 179 VDQRDTEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEI--- 235

Query: 210 LFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSA 269
                   D      L+D ++KCG +E A E+F +M  + +  W AMI+GY         
Sbjct: 236 --------DPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYA-------- 279

Query: 270 CELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGL 329
                                  ++GR  EALE    M    V PN  T    L+A +  
Sbjct: 280 -----------------------IHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHA 316

Query: 330 AVLNKGRWMHSYIVK-NGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAM 388
            ++++ + +   + + +GF                               K  + H+  M
Sbjct: 317 GLVHEAKLLFESMERIHGF-------------------------------KPSIEHYGCM 345

Query: 389 IVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN 445
           +  LG  G+  +A +L      M +KP A  +  +LNAC   G +  G++   ++I 
Sbjct: 346 VDLLGRAGLLKEAEELIEN---MPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQ 399


>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
          Length = 787

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 238/646 (36%), Positives = 361/646 (55%), Gaps = 20/646 (3%)

Query: 55  ISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL 114
           ++S L  LY    ++ + +AR +FD +   P  VL+N L+     ++       + CD  
Sbjct: 151 VASALAKLYFV--LSRVDHARKVFDTV-PSPDTVLWNTLLAGLSGSEAVESFARMVCDGS 207

Query: 115 DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEID 174
            R   PD  TL  V+  AA +  +  G+ +H    K G    + VL+ L+S+Y+K G+++
Sbjct: 208 VR---PDATTLASVLPAAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDVE 264

Query: 175 LGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLF----SWTCLVDGFS 230
             R +FD M+  DLV++N LI GY   G V  ++ LF E+    L+    +   L+   S
Sbjct: 265 SARCLFDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVHS 324

Query: 231 KCGKVEIAR----EIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNS 286
             G   +A+     +       N     A+   + +  D++SA + FD M  + + +WN+
Sbjct: 325 PFGHDLLAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWNA 384

Query: 287 MIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNG 346
           MI+GY  NG    A+ L E M+  +V PN  T+ S LSA A L  L+ G+W+H  I +  
Sbjct: 385 MISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLGKWLHRIITEED 444

Query: 347 FVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFN 406
              +  + T LI MY+KCGSI  A  +F  +  K V  W AMI G G+HG   +AL L+ 
Sbjct: 445 LEPNVYVMTALIDMYAKCGSISEARRIFNTMDNKNVVSWNAMIAGYGLHGQGAEALKLYK 504

Query: 407 KMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRT 466
            M    + PT+ TF+ VL ACSH GLV +G + F  M +DY I P IEH  C+VD+L R 
Sbjct: 505 DMLDAHLLPTSATFLSVLYACSHGGLVEEGWKVFRSMTDDYAINPGIEHCTCMVDLLGRA 564

Query: 467 GYLEEAKSTIESMP---MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYV 523
           G L+EA   I   P   + P   +W +LL     H + D+ + A+  L ++ P+  G YV
Sbjct: 565 GQLKEAFELISEFPKSAVGPG--VWGALLGACMVHKDSDLAKLASQKLFELDPENSGYYV 622

Query: 524 VLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHS 583
           +LSN++ +  Q+ + + VR+  K R   K PG + IE     H F+ GD++HPQ++ I+S
Sbjct: 623 LLSNLHTSKKQYSEAAVVRQEAKSRKLVKTPGYTLIEIGNKPHVFMAGDRAHPQSEAIYS 682

Query: 584 KLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIV 643
            L ++  K+  AG+ P+T   L  +E++ EKE  ++ HSE+LAIAFGL++ +  + IRI+
Sbjct: 683 YLEKLTAKMIEAGYRPETEAALYDVEEE-EKEHMVKVHSEKLAIAFGLLSTEPGTEIRII 741

Query: 644 KNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           KNLRVC DCH+ TK +S +  R I+VRD SRFHHF++G CSC D+W
Sbjct: 742 KNLRVCLDCHNATKFISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 787


>gi|242096978|ref|XP_002438979.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
 gi|241917202|gb|EER90346.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
          Length = 723

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 253/714 (35%), Positives = 380/714 (53%), Gaps = 79/714 (11%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVD--PHINNLHYARSIFDRILQHPSLVLYNL 92
           ++  QLHA+   +  I H   +  LL+   +      +L Y  S+FDR L HP+  L++ 
Sbjct: 13  RQASQLHAILTTSGRIAHRPSAEHLLNSLTNCLSAPRHLRYVLSLFDR-LPHPTTFLHDT 71

Query: 93  LIK-CYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKL 151
            ++ C   +  +   + +   +    +    FT   V +  A        + +H    + 
Sbjct: 72  ALRACLQASAGADHPVLILRRMRRGGVRMSAFTFHFVFRCCAAGAGAGLCRMLHAACLRT 131

Query: 152 GF-GFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD----------------------- 187
                 + V + L+ MYA  G  D  RR FD +  KD                       
Sbjct: 132 MLPSAARIVANPLIHMYASLGLTDDARRAFDEVPVKDAVVWATVIGGLVRWGLLDEARRL 191

Query: 188 --------LVSWNCLIDGYVKKGEVEVAMKLFDEM------PDR---------------- 217
                   +VSW  LI GY + G    A+  F+ M      PD                 
Sbjct: 192 LVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVEPDEVAVIGALSACSKLKNL 251

Query: 218 ------------------DLFSWTCLVDGFSKCGKVEIAREIFYRM-PNRNLVSWNAMIN 258
                             D    T L+D ++KCG +  A+ +F  +   +    WN +I+
Sbjct: 252 EFGRLLHLLVGKKRIQMTDKLVVT-LIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNVIID 310

Query: 259 GYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDAT 318
           GY K G VD A  LFD M  RD+IT+NSMI GY  +GR  +AL+L   +    +  ++ T
Sbjct: 311 GYCKLGHVDIARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQLRRHGMRADNFT 370

Query: 319 LVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS 378
           +VS L+A A L  L +GR +H+ I +     D  L T L+ MY KCG ++ A  VF  + 
Sbjct: 371 VVSLLTACASLGALPQGRALHASIEQRIVEEDVYLVTALVDMYMKCGRVDEATAVFHRMG 430

Query: 379 KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR 438
           ++ V  W+AMI GL  +GM   AL+ F +M R G +PT++T+I VL ACSH+ L+N+GR+
Sbjct: 431 ERDVHTWSAMIAGLAFNGMGMDALESFCQMKRDGFQPTSVTYIAVLTACSHSSLLNEGRQ 490

Query: 439 YFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNH 498
           +FN M + + + P IEHYGC++D+L R+G L+EA   +++MPM+PN VIW S+LS  R H
Sbjct: 491 HFNEMRSLHKLHPQIEHYGCMIDLLARSGLLDEAMHLVQTMPMQPNAVIWASILSACRVH 550

Query: 499 GNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSS 558
            N D+  +AA +L+K+AP+    YV L NIY  + QW +   +R +M+++G +K  G SS
Sbjct: 551 KNIDLARHAAEHLLKLAPEEDAVYVQLYNIYIDSRQWVEAKRIRMLMEEQGVKKTAGYSS 610

Query: 559 IEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAEL 618
           I   G +H+FVV D+SHP T EI + + E+  +LK+AG+ P T+++ + + D++EKE  L
Sbjct: 611 ITVAGQVHKFVVNDQSHPWTLEIITMMEEIARRLKSAGYSPATSRIAVDV-DEEEKEQAL 669

Query: 619 ENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDN 672
             HSE++AIAFGLI++    PI I+KNLRVC DCHS  KL+S ++NREIIVRD 
Sbjct: 670 LAHSEKIAIAFGLISLPPNLPIHIMKNLRVCEDCHSAIKLISQLWNREIIVRDR 723


>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 878

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 231/635 (36%), Positives = 355/635 (55%), Gaps = 35/635 (5%)

Query: 87  LVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHG 146
           +V +N +I   V   R  EA+ +  D++   + PD  T    +   +RL  +  G+++H 
Sbjct: 247 VVTWNTMISLLVQGGRCAEAVEVLYDMVSLGVRPDGVTFASALPACSRLEMLALGREMHA 306

Query: 147 LVFK-LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD--KDLVSWNCLIDGYVKKGE 203
           +V K      + FV S+LV MYA   ++   RRVFD + +  + L  WN +I GY + G 
Sbjct: 307 VVLKDADLAANSFVASALVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMICGYAQAGM 366

Query: 204 VEVAMKLFDEM-------PDRDLFSWTCLV----DGFSKCGKVEIAREIFYRMPNRNLVS 252
            E A++LF  M       P     S         +GF+  GK  +   +  R    N   
Sbjct: 367 DEEALELFSRMEAEAGCAPSETTMSGVLPACARSEGFA--GKEAMHGYVVKRGMAGNRFV 424

Query: 253 WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLI--- 309
            NA+++ Y + G++D A  +F  ++ RD+++WN++I G  + G   EA +L+  M +   
Sbjct: 425 QNALMDMYARLGEMDVARRIFAMIDPRDVVSWNTLITGCVVQGHAAEAFQLVTEMQLPSP 484

Query: 310 ----------GDV---LPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTL 356
                     G+    +PN+ TL++ L   A LA   +G+ +H Y V++    D  +G+ 
Sbjct: 485 SPSSSSTTEEGEAHRCMPNNITLMTLLPGCAALAAPARGKEIHGYAVRHALESDIAVGSA 544

Query: 357 LIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG-MKP 415
           L+ MY+KCG + ++  VF  + ++ V  W  +I+  GMHG+  +A+ LF++M   G   P
Sbjct: 545 LVDMYAKCGCLAASRAVFDRLPRRNVITWNVLIMAYGMHGLGDEAVALFDEMAAGGEATP 604

Query: 416 TAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKST 475
             +TFI  L ACSH+GLV+ G   F+ M  D+G++PT + + C+VD+L R G L+EA S 
Sbjct: 605 NEVTFIAALAACSHSGLVDRGLELFHGMERDHGVKPTPDLHACVVDVLGRAGRLDEAYSI 664

Query: 476 IESM-PMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQ 534
           I SM P       W SLL   R H N ++GE AA  L ++ P     YV+L NIY+AAG 
Sbjct: 665 ITSMEPGEQQVSAWSSLLGACRLHRNVELGEVAAERLFELEPGEASHYVLLCNIYSAAGM 724

Query: 535 WDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKA 594
           WDK   VR  M+++G  K+PG S IE  G +H F+ G+ SHP + E+H+ +  +  +++ 
Sbjct: 725 WDKSVAVRVRMRRQGVAKEPGCSWIELDGAIHRFMAGESSHPASAEVHAHMDALWERMRR 784

Query: 595 AGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHS 654
            G+ PDT+ VL  + D+ EK A L  HSE+LAIAFGL+     + IR+ KNLRVCNDCH 
Sbjct: 785 EGYAPDTSCVLHDV-DEDEKAAMLRYHSEKLAIAFGLLRAPPGAAIRVAKNLRVCNDCHE 843

Query: 655 VTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
             K +S +  R+I++RD  RFHHF++GSCSC D+W
Sbjct: 844 AAKFMSKMVGRDIVLRDVRRFHHFRDGSCSCGDYW 878



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 114/411 (27%), Positives = 190/411 (46%), Gaps = 35/411 (8%)

Query: 121 DNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGF--GFDKFVLSSLVSMYAKFGEIDLGRR 178
           D+F LP  IK AA L   +  + +H    +          V ++L++ YA+ G++D    
Sbjct: 62  DHFALPPAIKSAAALRDARAARSLHAAALRRALLHRPSPAVGNALLTAYARCGDLDAALA 121

Query: 179 VFDAM--DDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM---PDRDLFSWTCLVDGFSKCG 233
           +F A   + +D VS+N LI       + E A+    +M      D+ S+T LV     C 
Sbjct: 122 LFAATATELRDAVSYNSLISALCLFRQWERALDALRDMLAEGRHDVSSFT-LVSVLLACS 180

Query: 234 KV------EIAREIF-------YRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIR- 279
            +       + RE         +    R    +NA+++ Y + G VD A  LF       
Sbjct: 181 HLPGDDGRRLGREAHAFALKRGFLDEGRERFPFNALLSMYARLGLVDDAQSLFRTTAAAF 240

Query: 280 -----DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNK 334
                D++TWN+MI+     GR  EA+E+L  M+   V P+  T  SAL A + L +L  
Sbjct: 241 SPGGGDVVTWNTMISLLVQGGRCAEAVEVLYDMVSLGVRPDGVTFASALPACSRLEMLAL 300

Query: 335 GRWMHSYIVKNG-FVVDGVLGTLLIQMYSKCGSIESALTVFRAISK--KKVGHWTAMIVG 391
           GR MH+ ++K+     +  + + L+ MY+    + SA  VF  + +  +++G W AMI G
Sbjct: 301 GREMHAVVLKDADLAANSFVASALVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMICG 360

Query: 392 LGMHGMATQALDLFNKM-CRMGMKPTAITFIGVLNACSHA-GLVNDGRRYFNMMINDYGI 449
               GM  +AL+LF++M    G  P+  T  GVL AC+ + G    G+   +  +   G+
Sbjct: 361 YAQAGMDEEALELFSRMEAEAGCAPSETTMSGVLPACARSEGFA--GKEAMHGYVVKRGM 418

Query: 450 EPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGN 500
                    L+D+  R G ++ A+     +  R + V W +L++G    G+
Sbjct: 419 AGNRFVQNALMDMYARLGEMDVARRIFAMIDPR-DVVSWNTLITGCVVQGH 468


>gi|345505210|gb|AEN99829.1| chlororespiratory reduction 4, partial [Barbarea verna]
          Length = 588

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 235/569 (41%), Positives = 325/569 (57%), Gaps = 43/569 (7%)

Query: 45  VKTNLIYHSGISSRLLSLYVDPHINNL-HYARSIFDRI----LQHPSL---VLYNLLIKC 96
           +KT  I +S +++R++  +       L  +AR +F         H  +    L+N +IK 
Sbjct: 11  IKTGFIXNSNLTTRIVLAFAASRRPYLAEFARCVFQNYHSCSFAHGEVEDPFLWNAVIKS 70

Query: 97  YVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFD 156
           +        AL  FC +L+  +  D F+L  V+K  +RLG ++EG QIHG + K G   D
Sbjct: 71  HSHGVDPKRALIWFCLMLENGVSVDKFSLSLVLKACSRLGFVQEGMQIHGFLRKTGIWSD 130

Query: 157 KFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKG-------------- 202
            F+ + L+ +Y K G +   R++FD M  +D VS+N +IDGYVK G              
Sbjct: 131 LFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGLIGSARELFDLMPK 190

Query: 203 --------------------EVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIF 242
                                V +A KLF EMP++DL SW  L+DG+ K G++E A+++F
Sbjct: 191 EMKNLISWNSMISGYAQTSDGVNIASKLFAEMPEKDLISWNSLIDGYVKHGRMEDAKDLF 250

Query: 243 YRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALE 302
           Y MP R++V+W  MI+GY K G V  A  LFD M  RD++ +NSM+AGY  N   MEALE
Sbjct: 251 YVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHRDVVAYNSMMAGYVQNKYNMEALE 310

Query: 303 LLETMLIGDVL-PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMY 361
           +   M     L P++ TLV  LSA+A L  L+K   MH YIV+  F + G LG  LI MY
Sbjct: 311 IFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFFLGGKLGVALIDMY 370

Query: 362 SKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFI 421
           SKCGSI+ A+ VF  I  K + HW AMI GL +HG+   A D+  ++ R  +KP  ITF+
Sbjct: 371 SKCGSIQQAMLVFERIENKSIDHWNAMIGGLAIHGLGESAFDMLLEIERRSIKPDDITFV 430

Query: 422 GVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPM 481
           G+LNACSH+GLV +G   F +M   + IEP ++HYGC+VDIL R+G +E AK+ IE MPM
Sbjct: 431 GILNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPM 490

Query: 482 RPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEV 541
            PN VIW + L+   +H   + GE  A +LI  A      YV+LSN+YA+ G W     V
Sbjct: 491 EPNDVIWRTFLTACSHHKEFETGEVVAKHLILQAGYNPSSYVLLSNMYASFGMWKDARRV 550

Query: 542 REMMKKRGFRKDPGSSSIEHRGVLHEFVV 570
           R MMK+R  +K PG S IE  G +HEF V
Sbjct: 551 RTMMKERELQKVPGCSWIELDGRVHEFFV 579


>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/553 (38%), Positives = 333/553 (60%), Gaps = 13/553 (2%)

Query: 147 LVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDL--VSWN-----CLIDGYV 199
           L+F      + F+ S+L+  YA+ G      R++ +M + ++  VS+       L+    
Sbjct: 67  LLFSQVHSPNPFLYSALIRAYARNGPFHHSIRLYTSMLNNNVSPVSFTFSALFSLLKNPS 126

Query: 200 KKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMING 259
              ++ +   LF  +   DL+    ++  + K G ++ AR++F  MP+R++V+W  +I  
Sbjct: 127 LGSQLHLHAFLFGFV--NDLYVGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTELIVA 184

Query: 260 YMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATL 319
           Y ++GD+DSACELF  + ++D++ W SM+ GY  N    +AL+    M    V+ ++ TL
Sbjct: 185 YARSGDMDSACELFVGLPVKDMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEITL 244

Query: 320 VSALSAVAGLAVLNKGRWMHSYIVKNGFVVDG--VLGTLLIQMYSKCGSIESALTVFRAI 377
           V A+SA A L V     W+      + F       +G+ LI MYSKCG++E A  VF+ +
Sbjct: 245 VGAISACAQLGVSGYADWIREIAESSRFGSGSNVFVGSALIDMYSKCGNVEEAYNVFKGM 304

Query: 378 SKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGR 437
            +  V  +++MIVG  +HG A  A+ LF +M   G+KP  +TF+G+  ACSHAG+V  G+
Sbjct: 305 KEMNVFSYSSMIVGFAVHGRARSAIKLFYEMLENGIKPNHVTFVGLFTACSHAGMVEQGQ 364

Query: 438 RYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARN 497
           + F  M   YG+ PT +HY C+ D+L R G+LE+A   +++MPM PN  +W +LL  +  
Sbjct: 365 QLFGAMKECYGVSPTADHYACMADLLGRAGHLEKALQLVQTMPMEPNGGVWGALLGASHI 424

Query: 498 HGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSS 557
           HGN D+ E A+ +L ++ PD +G Y++LS  YA A +WD VS VR++M+++  RK+PG S
Sbjct: 425 HGNPDVAEIASRSLFELEPDNLGNYLLLSKTYALAAKWDDVSRVRKLMREKQLRKNPGCS 484

Query: 558 SIEHR-GVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEA 616
            +E + G++HEF  GD  HP+ +EI   L ++  +LK  G+ P    V   I+D+  K  
Sbjct: 485 WVEAKNGIIHEFFAGDVKHPEINEIKKALDDLLQRLKCTGYQPKLNSVPYDIDDEG-KRC 543

Query: 617 ELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFH 676
            L +HSE+LA+A+GL++  + S I+I+KNLR+C DCH V    S +  R+IIVRDN RFH
Sbjct: 544 LLVSHSEKLALAYGLLSTDAGSTIKIMKNLRICEDCHIVMCGASKLTGRKIIVRDNMRFH 603

Query: 677 HFKNGSCSCKDFW 689
           HF NG+CSC +FW
Sbjct: 604 HFLNGACSCNNFW 616



 Score =  152 bits (383), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 109/423 (25%), Positives = 197/423 (46%), Gaps = 54/423 (12%)

Query: 23  LHWNILKFSSTHKET----QQLHALSVKTNLIYHSGISSRLLSLYVD-PHINNLHYARSI 77
           L W  ++   +H  T    +QLHA   + NL   S + + LL      PHI    Y   +
Sbjct: 9   LEWEAVRIIESHCTTLNHAKQLHAHIYRNNLHQSSYVITNLLRFITTLPHIPVHTYPHLL 68

Query: 78  FDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGA 137
           F ++   P+  LY+ LI+ Y  N   H ++ L+  +L+  + P +FT   +    + L  
Sbjct: 69  FSQV-HSPNPFLYSALIRAYARNGPFHHSIRLYTSMLNNNVSPVSFTFSALF---SLLKN 124

Query: 138 IKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDG 197
              G Q+H   F  GF  D +V ++++ MY KFG +D  R+VFD M  +D+V+W  LI  
Sbjct: 125 PSLGSQLHLHAFLFGFVNDLYVGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTELIVA 184

Query: 198 YVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS----- 252
           Y + G+++ A +LF  +P +D+ +WT +V G+S+    + A + F +M    +V+     
Sbjct: 185 YARSGDMDSACELFVGLPVKDMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEITL 244

Query: 253 -----------------W-------------------NAMINGYMKAGDVDSACELFDDM 276
                            W                   +A+I+ Y K G+V+ A  +F  M
Sbjct: 245 VGAISACAQLGVSGYADWIREIAESSRFGSGSNVFVGSALIDMYSKCGNVEEAYNVFKGM 304

Query: 277 EIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGR 336
           +  ++ +++SMI G+ ++GR   A++L   ML   + PN  T V   +A +   ++ +G+
Sbjct: 305 KEMNVFSYSSMIVGFAVHGRARSAIKLFYEMLENGIKPNHVTFVGLFTACSHAGMVEQGQ 364

Query: 337 WMHSYIVKNGFVVDGVLG--TLLIQMYSKCGSIESALTVFRAIS-KKKVGHWTAMIVGLG 393
            +    +K  + V         +  +  + G +E AL + + +  +   G W A++    
Sbjct: 365 QLFG-AMKECYGVSPTADHYACMADLLGRAGHLEKALQLVQTMPMEPNGGVWGALLGASH 423

Query: 394 MHG 396
           +HG
Sbjct: 424 IHG 426


>gi|242047142|ref|XP_002461317.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
 gi|241924694|gb|EER97838.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
          Length = 640

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 235/597 (39%), Positives = 331/597 (55%), Gaps = 46/597 (7%)

Query: 139 KEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGY 198
           +   ++H    + G   DK V   L   YA  G +DL   +     D   V +   I  +
Sbjct: 44  RRASELHAAAVRAGVDQDKAVDFRLQRAYAASGRLDLAVALLRRTPDPTAVFYTSAIHAH 103

Query: 199 VKKGEVEVAMKLFDEM--PDRDLFSWTCLVDGFSKCGKVEIAREI--------------- 241
             +G    A+ L  EM      L +   L      CG + + R +               
Sbjct: 104 SSRGLHHAALALLSEMLLSHGLLPTAHTLSASLPACGGLAVGRALHGYAVKLALSGEPYV 163

Query: 242 --------------------FYRM-PNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRD 280
                               F  M P+ ++VS  AM+  Y K G +D A  LFD +  +D
Sbjct: 164 ATALLGMYARAGDAAAARVLFDGMQPDPHVVSVTAMLTCYAKMGLLDDARSLFDGLPSKD 223

Query: 281 LITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHS 340
           LI WN+M+ GY  +GR  EAL L   ML   V P++ ++V ALSAVA L     GRW+HS
Sbjct: 224 LICWNAMMDGYTQHGRPSEALRLFRRMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHS 283

Query: 341 YIVKNG---FVVDGVLGTLLIQMYSKCGSIESALTVFRAISK--KKVGHWTAMIVGLGMH 395
           ++  +      ++  +GT LI MY KCGS+E A+ VF  +    + +  W AM+ G  MH
Sbjct: 284 FVTNSSSRRVRLNARVGTALIDMYYKCGSLEDAVAVFGDLGAGDRDIVAWNAMVNGYAMH 343

Query: 396 GMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEH 455
           G + +AL  F ++   G+ PT ITFIGVLNACSH+GLV++GR  F  M  +YGIEP +EH
Sbjct: 344 GHSREALAAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRELFRSMAEEYGIEPKVEH 403

Query: 456 YGCLVDILCRTGYLEEAKSTIESMP-MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKV 514
           YGC+VD+L R G +EEA   ++SM   +P+ V+W SLL+  R H N ++G+  A++L+  
Sbjct: 404 YGCMVDLLGRAGRVEEAFELVQSMTRTKPDAVMWASLLAACRLHKNMELGQRIADHLVAN 463

Query: 515 APDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKS 574
                G YV+LSN+YAAAG W +V  VR MM+  G +K+PG S++E    + EFV GD+S
Sbjct: 464 GLANSGTYVLLSNMYAAAGNWREVGRVRAMMRASGIQKEPGCSAVEVGRRVVEFVAGDRS 523

Query: 575 HPQTDEIHSKLSEMRNKLKAAGHVPDT--TQVLLCIEDQKEKEAELENHSERLAIAFGLI 632
           HP+  EI++KL E+    +A GHVP T      L  +D   KE  L  HSE+LA+AFGLI
Sbjct: 524 HPRAAEIYAKLEEVNGMARARGHVPRTELVLHDLDDDDTAAKEQALAVHSEKLALAFGLI 583

Query: 633 NVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           +    + I+IVKNLR C DCH+V KL+S +  R+I+ RD +RFHHF +GSC+C D+W
Sbjct: 584 STPPGTAIKIVKNLRACADCHAVLKLVSEVTGRKIVFRDRNRFHHFVDGSCTCGDYW 640



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 113/447 (25%), Positives = 183/447 (40%), Gaps = 84/447 (18%)

Query: 27  ILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPS 86
           +L   ++ +   +LHA +V+  +     +  RL   Y       L  A ++  R    P+
Sbjct: 36  LLAGCASARRASELHAAAVRAGVDQDKAVDFRLQRAYAAS--GRLDLAVALLRRT-PDPT 92

Query: 87  LVLYNLLIKCYVFNQRSHEALTLFCD-LLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIH 145
            V Y   I  +      H AL L  + LL   LLP   TL   +      G +  G+ +H
Sbjct: 93  AVFYTSAIHAHSSRGLHHAALALLSEMLLSHGLLPTAHTLSASLPAC---GGLAVGRALH 149

Query: 146 GLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD-DKDLVSWNCLIDGYVKKGEV 204
           G   KL    + +V ++L+ MYA+ G+    R +FD M  D  +VS   ++  Y K G +
Sbjct: 150 GYAVKLALSGEPYVATALLGMYARAGDAAAARVLFDGMQPDPHVVSVTAMLTCYAKMGLL 209

Query: 205 EVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM------PNR---------- 248
           + A  LFD +P +DL  W  ++DG+++ G+   A  +F RM      P+           
Sbjct: 210 DDARSLFDGLPSKDLICWNAMMDGYTQHGRPSEALRLFRRMLRSGVEPDEVSVVLALSAV 269

Query: 249 --------------------------NLVSWNAMINGYMKAGDVDSACELFDDMEI--RD 280
                                     N     A+I+ Y K G ++ A  +F D+    RD
Sbjct: 270 AQLGTAESGRWLHSFVTNSSSRRVRLNARVGTALIDMYYKCGSLEDAVAVFGDLGAGDRD 329

Query: 281 LITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHS 340
           ++ WN+M+ GY ++G   EAL     +    + P D T +  L+A +   ++++GR    
Sbjct: 330 IVAWNAMVNGYAMHGHSREALAAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGR---- 385

Query: 341 YIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQ 400
                          L   M  + G IE            KV H+  M+  LG  G   +
Sbjct: 386 --------------ELFRSMAEEYG-IE-----------PKVEHYGCMVDLLGRAGRVEE 419

Query: 401 ALDLFNKMCRMGMKPTAITFIGVLNAC 427
           A +L   M R   KP A+ +  +L AC
Sbjct: 420 AFELVQSMTR--TKPDAVMWASLLAAC 444


>gi|326490792|dbj|BAJ90063.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 754

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 231/609 (37%), Positives = 338/609 (55%), Gaps = 40/609 (6%)

Query: 120 PDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRV 179
           P   T+  ++  A+ LG    G+Q+H  + +LGFG   F  S LV MYAK G I   +RV
Sbjct: 147 PSRITMSGMVMAASALGDRALGRQVHCQIMRLGFGAYAFTWSPLVDMYAKMGLIGDAKRV 206

Query: 180 FDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAR 239
           FD M  K++V +N +I G ++   VE A  +F+ M DRD  +WT +V G ++ G    A 
Sbjct: 207 FDEMVVKNVVMYNTMITGLLRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEAL 266

Query: 240 EIFYRMP---------------------------------------NRNLVSWNAMINGY 260
           ++F RM                                        + N+   +A+++ Y
Sbjct: 267 DVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYTIRTLYDGNIFVGSALVDMY 326

Query: 261 MKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLV 320
            K   +  A  +F  M  +++I+W +MI GY  NG   EA+ +   M    + PND TL 
Sbjct: 327 SKCRSIRLAEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQTDGIKPNDFTLG 386

Query: 321 SALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKK 380
           S +S+ A LA L +G   H   + +G      + + L+ +Y KCGSIE A  +F  +   
Sbjct: 387 SVISSCANLASLEEGAQFHCMALVSGLRPYITVSSALVTLYGKCGSIEDAHRLFDEMPFH 446

Query: 381 KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYF 440
               +TA++ G    G A + +DLF KM   G+KP  +TFIGVL+ACS +GLV  G  YF
Sbjct: 447 DQVSYTALVSGYAQFGKAKETIDLFEKMLLKGVKPNGVTFIGVLSACSRSGLVEKGCSYF 506

Query: 441 NMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGN 500
           + M  D+GI    +HY C++D+  R+G L+EA+  I  MP  P+ + W +LLS  R  G+
Sbjct: 507 HSMQQDHGIVLLDDHYTCMIDLYSRSGRLKEAEEFIRQMPRCPDAIGWATLLSACRLRGD 566

Query: 501 KDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIE 560
            +IG++AA NL+K  P     YV+L +++A+ G+W +V+ +R  M+ R  +K+PG S I+
Sbjct: 567 MEIGKWAAENLLKTDPQNPASYVLLCSMHASKGEWSEVALLRRGMRDRQVKKEPGCSWIK 626

Query: 561 HRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELEN 620
           ++  +H F   D+SHP +  I+ KL  + +K+   G+ PD + VL  + D  EK   L N
Sbjct: 627 YKNRVHIFSADDQSHPFSGTIYEKLQWLNSKMAEEGYKPDVSSVLHDVAD-AEKVHMLSN 685

Query: 621 HSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKN 680
           HSE+LAIAFGLI V    PIR+VKNLRVC DCH+ TK +S I  R+I+VRD  RFH F N
Sbjct: 686 HSEKLAIAFGLIFVPEEMPIRVVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSN 745

Query: 681 GSCSCKDFW 689
           G CSC DFW
Sbjct: 746 GICSCGDFW 754



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 129/475 (27%), Positives = 207/475 (43%), Gaps = 83/475 (17%)

Query: 132 AARLGAIKEGKQIHGLVFK-LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVS 190
             R GA   G  +H LV + L      +VL+ L++ YA+ G + L RR+FDAM D +L +
Sbjct: 20  GGRDGARVPGA-VHCLVLRTLPHPPPTYVLNHLLTAYARSGRLPLARRLFDAMPDPNLFT 78

Query: 191 WNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSK------------------- 231
            N L+        +    +LF  MP RD  S+  L+ GFS                    
Sbjct: 79  RNALLSALAHARLLPDMDRLFASMPQRDAVSYNALIAGFSGAGAPARAAGAYRALLREEA 138

Query: 232 --------------CGKVEIAREIFYRMPNRNL-------------VSWNAMINGYMKAG 264
                          G V  A  +  R   R +              +W+ +++ Y K G
Sbjct: 139 VVDGARVRPSRITMSGMVMAASALGDRALGRQVHCQIMRLGFGAYAFTWSPLVDMYAKMG 198

Query: 265 DVDSACELFDDMEI-------------------------------RDLITWNSMIAGYEL 293
            +  A  +FD+M +                               RD ITW +M+ G   
Sbjct: 199 LIGDAKRVFDEMVVKNVVMYNTMITGLLRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQ 258

Query: 294 NGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVL 353
           NG   EAL++   M    V  +  T  S L+A   LA   +G+ +H+Y ++  +  +  +
Sbjct: 259 NGLQSEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYTIRTLYDGNIFV 318

Query: 354 GTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGM 413
           G+ L+ MYSKC SI  A  VFR ++ K +  WTAMIVG G +G   +A+ +F++M   G+
Sbjct: 319 GSALVDMYSKCRSIRLAEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQTDGI 378

Query: 414 KPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAK 473
           KP   T   V+++C++   + +G ++  M +   G+ P I     LV +  + G +E+A 
Sbjct: 379 KPNDFTLGSVISSCANLASLEEGAQFHCMALVS-GLRPYITVSSALVTLYGKCGSIEDAH 437

Query: 474 STIESMPMRPNFVIWMSLLSGARNHGN-KDIGEYAANNLIK-VAPDTIGCYVVLS 526
              + MP     V + +L+SG    G  K+  +     L+K V P+ +    VLS
Sbjct: 438 RLFDEMPFHDQ-VSYTALVSGYAQFGKAKETIDLFEKMLLKGVKPNGVTFIGVLS 491



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 152/326 (46%), Gaps = 21/326 (6%)

Query: 32  STHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYN 91
           +  +E +Q+HA +++T    +  + S L+ +Y      ++  A ++F R +   +++ + 
Sbjct: 295 AASEEGKQIHAYTIRTLYDGNIFVGSALVDMY--SKCRSIRLAEAVFRR-MTCKNIISWT 351

Query: 92  LLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKL 151
            +I  Y  N    EA+ +F ++    + P++FTL  VI   A L +++EG Q H +    
Sbjct: 352 AMIVGYGQNGCGEEAVRVFSEMQTDGIKPNDFTLGSVISSCANLASLEEGAQFHCMALVS 411

Query: 152 GFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLF 211
           G      V S+LV++Y K G I+   R+FD M   D VS+  L+ GY + G+ +  + LF
Sbjct: 412 GLRPYITVSSALVTLYGKCGSIEDAHRLFDEMPFHDQVSYTALVSGYAQFGKAKETIDLF 471

Query: 212 DEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLV-----SWNAMINGYMK 262
           ++M  + +     ++  ++   S+ G VE     F+ M   + +      +  MI+ Y +
Sbjct: 472 EKMLLKGVKPNGVTFIGVLSACSRSGLVEKGCSYFHSMQQDHGIVLLDDHYTCMIDLYSR 531

Query: 263 AGDVDSACELFDDM-EIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL-PNDATLV 320
           +G +  A E    M    D I W ++++   L G         E +L  D   P    L+
Sbjct: 532 SGRLKEAEEFIRQMPRCPDAIGWATLLSACRLRGDMEIGKWAAENLLKTDPQNPASYVLL 591

Query: 321 SALSAVAGLAVLNKGRWMHSYIVKNG 346
            ++ A       +KG W    +++ G
Sbjct: 592 CSMHA-------SKGEWSEVALLRRG 610


>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Vitis vinifera]
          Length = 629

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 236/601 (39%), Positives = 336/601 (55%), Gaps = 24/601 (3%)

Query: 104 HEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSL 163
            EAL L+C +L     P+ FT P   K  A L     G Q+HG V K G   + FV +SL
Sbjct: 38  QEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQLHGHVIKTGCEPEPFVQTSL 97

Query: 164 VSMYAKFGEIDLGRRVFDA-MDDKDL-VSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFS 221
           +SMY K   I   R+VFD     ++L V +N LI GY        A+ LF +M    +  
Sbjct: 98  ISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRFSDAVLLFRQMRKEGVSV 157

Query: 222 WTCLVDGFSK--CGKVEI-------AREIFYRMPNRNLVSWNAMINGYMKAGDVDSACEL 272
               + G      G + +       A  + + + + +L   N ++  Y++ G VD A +L
Sbjct: 158 NAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGL-DGDLSVGNCLLTMYVRCGSVDFARKL 216

Query: 273 FDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVL 332
           FD M  + LITWN+MI+GY  NG     L+L   M    ++P+  TLV  LS+ A L   
Sbjct: 217 FDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAH 276

Query: 333 NKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGL 392
             GR +   I  +GF  +  L   LI MY++CG++  A  +F  +++K V  WTA+I G 
Sbjct: 277 AAGREVEQRIELSGFGFNPFLKNALINMYARCGNLVKARAIFDGMTEKNVISWTAIIAGY 336

Query: 393 GMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT 452
           GMHG    A+ LF++M      P    F+ VL+ACSHAGL   G  YF  M  DYG++P 
Sbjct: 337 GMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACSHAGLTEKGLYYFTAMERDYGLQPG 396

Query: 453 IEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLI 512
            EHY C+VD+L R G LEEA+  I SM + P+  +W +LL   + H N ++ E A   +I
Sbjct: 397 PEHYSCVVDLLGRAGRLEEARKLIGSMSVEPDGAVWGALLGACKIHRNVELAELAFEKVI 456

Query: 513 KVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGD 572
           +  P  IG YV+LSNI++ AG  + +  VR MM++R  +K+PG S +E++G +H F+ GD
Sbjct: 457 EFEPTNIGYYVLLSNIFSEAGNMEGILRVRVMMRERKLKKEPGCSYVEYQGRIHLFLAGD 516

Query: 573 KSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELEN----HSERLAIA 628
           ++HPQ  EI+  L  + + +K  G   D         DQ+ +  EL      HSE+LAIA
Sbjct: 517 RTHPQAQEIYHMLDGLEDIIKRRGGSNDN--------DQESRNEELITGMGVHSEKLAIA 568

Query: 629 FGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDF 688
           FGLIN +  + I ++KNLRVC DCH   KL+S I +R+++VRD +RFHHFKNG CSCKD+
Sbjct: 569 FGLINTEPGTEITVIKNLRVCGDCHLFLKLVSEIVDRQLVVRDATRFHHFKNGVCSCKDY 628

Query: 689 W 689
           W
Sbjct: 629 W 629



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 113/410 (27%), Positives = 193/410 (47%), Gaps = 26/410 (6%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSL-VLYNLLIKCY 97
           QLH   +KT       + + L+S+Y     + +  AR +FD      +L V YN LI  Y
Sbjct: 77  QLHGHVIKTGCEPEPFVQTSLISMYCK--CSTIASARKVFDENHHSRNLAVCYNALIAGY 134

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
             N R  +A+ LF  +    +  +  T+  +I   A    +  G  +H    + G   D 
Sbjct: 135 SLNSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDL 194

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM--- 214
            V + L++MY + G +D  R++FD M +K L++WN +I GY + G     + L+ +M   
Sbjct: 195 SVGNCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFT 254

Query: 215 ---PDRDLFSWTCLVDGFSKC---GKVEIAREIFYRMP----NRNLVSWNAMINGYMKAG 264
              PD        LV   S C   G     RE+  R+       N    NA+IN Y + G
Sbjct: 255 GIVPDP-----VTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCG 309

Query: 265 DVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS 324
           ++  A  +FD M  +++I+W ++IAGY ++G+   A++L + M+  D LP+ A  VS LS
Sbjct: 310 NLVKARAIFDGMTEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLS 369

Query: 325 AVAGLAVLNKGRWMHSYIVKN-GFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVG 383
           A +   +  KG +  + + ++ G        + ++ +  + G +E A  +  ++S +  G
Sbjct: 370 ACSHAGLTEKGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVEPDG 429

Query: 384 H-WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVL-NACSHAG 431
             W A++    +H     A   F K+  +  +PT I +  +L N  S AG
Sbjct: 430 AVWGALLGACKIHRNVELAELAFEKV--IEFEPTNIGYYVLLSNIFSEAG 477



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 124/276 (44%), Gaps = 7/276 (2%)

Query: 283 TWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYI 342
           +WN+ +        F EAL L   ML     PN  T   A  + A L++   G  +H ++
Sbjct: 23  SWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQLHGHV 82

Query: 343 VKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAI--SKKKVGHWTAMIVGLGMHGMATQ 400
           +K G   +  + T LI MY KC +I SA  VF     S+     + A+I G  ++   + 
Sbjct: 83  IKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRFSD 142

Query: 401 ALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLV 460
           A+ LF +M + G+   A+T +G++  C+    +  G       +  +G++  +    CL+
Sbjct: 143 AVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVR-FGLDGDLSVGNCLL 201

Query: 461 DILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG--NKDIGEYAANNLIKVAPDT 518
            +  R G ++ A+   + MP +   + W +++SG   +G     +  Y       + PD 
Sbjct: 202 TMYVRCGSVDFARKLFDGMPEK-GLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDP 260

Query: 519 IGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDP 554
           +    VLS+  A  G      EV + ++  GF  +P
Sbjct: 261 VTLVGVLSSC-AHLGAHAAGREVEQRIELSGFGFNP 295


>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 879

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 237/664 (35%), Positives = 378/664 (56%), Gaps = 18/664 (2%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +++HA+ V+T        ++ L+ +Y    + ++H A  +F ++ +   +V +N  I   
Sbjct: 222 RKVHAMVVRTGYDKDVFTANALVDMY--SKLGDIHMAALVFGKVPK-TDVVSWNAFISGC 278

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEG--KQIHGLVFKLGFGF 155
           V +     AL L   +    L+P+ FTL  ++K  A  GA      +QIHG + K     
Sbjct: 279 VLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADS 338

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP 215
           D ++  +LV MYAK+G +D  R+VF+ +  KDL+ WN LI G    G    ++ LF  M 
Sbjct: 339 DDYIGVALVDMYAKYGLLDDARKVFEWIPRKDLLLWNALISGCSHGGCHGESLSLFCRMR 398

Query: 216 DRD----------LFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGD 265
                        +   T  ++  S   +V    E    + + ++V  N +I+ Y K   
Sbjct: 399 KEGSDINRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHVV--NGLIDSYWKCNC 456

Query: 266 VDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSA 325
           +  A ++F++    ++I + SMI          +A++L   ML   + P+   L S L+A
Sbjct: 457 LRYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNA 516

Query: 326 VAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHW 385
            A L+   +G+ +H++++K  F+ D   G  L+  Y+KCGSIE A   F  +  K V  W
Sbjct: 517 CASLSAYEQGKQVHAHLIKRKFMTDVFAGNALVYTYAKCGSIEDADLAFSGLPDKGVVSW 576

Query: 386 TAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN 445
           +AMI GL  HG   +ALD+F +M    + P  IT   VL AC+HAGLV++ + YF+ M  
Sbjct: 577 SAMIGGLAQHGHGKRALDVFRRMVDERIAPNHITLTSVLCACNHAGLVDEAKGYFSSMKE 636

Query: 446 DYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGE 505
            +GI+ T EHY C++D+L R G L++A   + SMP   N  +W +LL+ +R H + ++G+
Sbjct: 637 MFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFEANAAVWGALLAASRVHRDPELGK 696

Query: 506 YAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVL 565
            AA  L  + P+  G +V+L+N YA+AG WD+V++VR++MK    +K+P  S +E +  +
Sbjct: 697 LAAEKLFVLEPEKSGTHVLLANTYASAGMWDEVAKVRKLMKDSKVKKEPAMSWVELKDRV 756

Query: 566 HEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERL 625
           H F+VGDKSHP+  +I++KL E+ + +  AG+VP+  +V L   D+ EKE  L +HSERL
Sbjct: 757 HTFIVGDKSHPRARDIYAKLEELGDLMSKAGYVPN-LEVDLHDVDKSEKELLLSHHSERL 815

Query: 626 AIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSC 685
           A+AF LI+  + +PIR+ KNLR+C DCH   K +S I +REII+RD +RFHHF +G+CSC
Sbjct: 816 AVAFALISTPAGAPIRVKKNLRICRDCHVAFKFISKIVSREIIIRDINRFHHFSDGACSC 875

Query: 686 KDFW 689
            D+W
Sbjct: 876 GDYW 879



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 148/530 (27%), Positives = 245/530 (46%), Gaps = 28/530 (5%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYV 98
            +HA  +K+ L++     + LLS Y    +     AR +FD     P  V ++ L+  Y 
Sbjct: 25  HIHAHLLKSGLLH--AFRNHLLSFYSKCRLPG--SARRVFDET-PDPCHVSWSSLVTAYS 79

Query: 99  FNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKF 158
            N    EAL  F  +  R +  + F LP V+K A   G    G Q+H +    G   D F
Sbjct: 80  NNALPREALAAFRAMRARGVRCNEFALPIVLKCAPDAGL---GVQVHAVAVSTGLSGDIF 136

Query: 159 VLSSLVSMYAKFGEIDLGRRVFD-AMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM--- 214
           V ++LV+MY  FG +D  RRVFD A  D++ VSWN ++  +VK      A++LF EM   
Sbjct: 137 VANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVKNDRCSDAVELFGEMVWS 196

Query: 215 ---PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMP----NRNLVSWNAMINGYMKAGDVD 267
              P+   F ++C+V+  +    +E  R++   +     ++++ + NA+++ Y K GD+ 
Sbjct: 197 GVRPNE--FGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVFTANALVDMYSKLGDIH 254

Query: 268 SACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS--A 325
            A  +F  +   D+++WN+ I+G  L+G    ALELL  M    ++PN  TL S L   A
Sbjct: 255 MAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACA 314

Query: 326 VAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHW 385
            AG      GR +H +++K     D  +G  L+ MY+K G ++ A  VF  I +K +  W
Sbjct: 315 GAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDLLLW 374

Query: 386 TAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN 445
            A+I G    G   ++L LF +M + G      T   VL + +    ++D  +  + +  
Sbjct: 375 NALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVLKSTASLEAISDTTQ-VHALAE 433

Query: 446 DYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGAR--NHGNKDI 503
             G          L+D   +   L  A    E      N + + S+++     +HG   I
Sbjct: 434 KIGFLSDSHVVNGLIDSYWKCNCLRYANKVFEEHS-SDNIIAFTSMITALSQCDHGEDAI 492

Query: 504 GEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKD 553
             +       + PD      +L N  A+   +++  +V   + KR F  D
Sbjct: 493 KLFMEMLRKGLEPDPFVLSSLL-NACASLSAYEQGKQVHAHLIKRKFMTD 541



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 128/546 (23%), Positives = 230/546 (42%), Gaps = 80/546 (14%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYV 98
           Q+HA++V T L     +++ L+++Y       +  AR +FD   +  + V +N ++  +V
Sbjct: 121 QVHAVAVSTGLSGDIFVANALVAMY--GGFGFVDEARRVFDEAARDRNAVSWNGMMSAFV 178

Query: 99  FNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKF 158
            N R  +A+ LF +++   + P+ F   CV+        ++ G+++H +V + G+  D F
Sbjct: 179 KNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVF 238

Query: 159 VLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM---- 214
             ++LV MY+K G+I +   VF  +   D+VSWN  I G V  G  + A++L  +M    
Sbjct: 239 TANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSSG 298

Query: 215 -------------------------------------PDRDLFSWTCLVDGFSKCGKVEI 237
                                                 D D +    LVD ++K G ++ 
Sbjct: 299 LVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLLDD 358

Query: 238 AREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRF 297
           AR++F  +P ++L+ WNA+I+G    G    +  LF  M             G ++    
Sbjct: 359 ARKVFEWIPRKDLLLWNALISGCSHGGCHGESLSLFCRMRKE----------GSDI---- 404

Query: 298 MEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLL 357
                            N  TL + L + A L  ++    +H+   K GF+ D  +   L
Sbjct: 405 -----------------NRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHVVNGL 447

Query: 358 IQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA 417
           I  Y KC  +  A  VF   S   +  +T+MI  L        A+ LF +M R G++P  
Sbjct: 448 IDSYWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDP 507

Query: 418 ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIE 477
                +LNAC+       G++    +I    +         LV    + G +E+A     
Sbjct: 508 FVLSSLLNACASLSAYEQGKQVHAHLIKRKFMTDVFAG-NALVYTYAKCGSIEDADLAFS 566

Query: 478 SMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGC-YVVLSNIYAAAGQWD 536
            +P +   V W +++ G   HG+   G+ A +   ++  + I   ++ L+++  A     
Sbjct: 567 GLPDK-GVVSWSAMIGGLAQHGH---GKRALDVFRRMVDERIAPNHITLTSVLCACNHAG 622

Query: 537 KVSEVR 542
            V E +
Sbjct: 623 LVDEAK 628



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 107/368 (29%), Positives = 166/368 (45%), Gaps = 14/368 (3%)

Query: 141 GKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVK 200
           G  IH  + K G     F  + L+S Y+K       RRVFD   D   VSW+ L+  Y  
Sbjct: 23  GAHIHAHLLKSGL-LHAF-RNHLLSFYSKCRLPGSARRVFDETPDPCHVSWSSLVTAYSN 80

Query: 201 KGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGK-----VEIAREIFYRMPNRNLVSWNA 255
                 A+  F  M  R +      +    KC       V++         + ++   NA
Sbjct: 81  NALPREALAAFRAMRARGVRCNEFALPIVLKCAPDAGLGVQVHAVAVSTGLSGDIFVANA 140

Query: 256 MINGYMKAGDVDSACELFDDM-EIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLP 314
           ++  Y   G VD A  +FD+    R+ ++WN M++ +  N R  +A+EL   M+   V P
Sbjct: 141 LVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVKNDRCSDAVELFGEMVWSGVRP 200

Query: 315 NDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVF 374
           N+      ++A  G   L  GR +H+ +V+ G+  D      L+ MYSK G I  A  VF
Sbjct: 201 NEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVFTANALVDMYSKLGDIHMAALVF 260

Query: 375 RAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN--ACSHAGL 432
             + K  V  W A I G  +HG    AL+L  +M   G+ P   T   +L   A + AG 
Sbjct: 261 GKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGAGAGA 320

Query: 433 VNDGRRYFNMMINDYGIEPTIEHYG-CLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSL 491
              GR+    MI       + ++ G  LVD+  + G L++A+   E +P R + ++W +L
Sbjct: 321 FALGRQIHGFMIK--ACADSDDYIGVALVDMYAKYGLLDDARKVFEWIP-RKDLLLWNAL 377

Query: 492 LSGARNHG 499
           +SG  + G
Sbjct: 378 ISGCSHGG 385


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 236/665 (35%), Positives = 376/665 (56%), Gaps = 23/665 (3%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI---- 94
           ++H L+VK  L     +++ L+ +Y       L  A+ +FD+     + V +N +I    
Sbjct: 155 RIHGLAVKLGLSEDVRVNNSLVDMY--SKCGYLTEAQMLFDKN-NRKNAVSWNTMIGGLC 211

Query: 95  -KCYVFNQRSHEALTLFCDL-LDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLG 152
            K Y+F     EA  LF ++ +   +  +  T+  ++     +  ++  K++HG   + G
Sbjct: 212 TKGYIF-----EAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKELHGYSIRHG 266

Query: 153 FGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFD 212
           F +D+ V +  V+ YAK G +    RVF +M+ K + SWN LI G  + G+   A+ L+ 
Sbjct: 267 FQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYI 326

Query: 213 EMPDR----DLFSWTCLVDGFSKCGKVEIAREI--FYRMPNRNLVSWN--AMINGYMKAG 264
           +M       D F+   L+   +    +   +E+  F       + S+   ++++ Y+  G
Sbjct: 327 QMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCG 386

Query: 265 DVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS 324
           +  SA  LFD ME +  ++WN+MI+GY  NG   +AL L   ++     P+D  +VS L 
Sbjct: 387 ESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLG 446

Query: 325 AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGH 384
           A +  + L  G+  H Y +K   + D  +    I MY+K G I+ + +VF  +  K +  
Sbjct: 447 ACSQQSALRLGKETHCYALKALLMEDVFVACSTIDMYAKSGCIKESRSVFDGLKNKDLAS 506

Query: 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMI 444
           W A+I   G+HG   ++++LF +M ++G  P   TFIG+L  CSHAGLV +G +YFN M 
Sbjct: 507 WNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTFIGILTVCSHAGLVEEGLKYFNEMQ 566

Query: 445 NDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIG 504
           N +GIEP +EHY C++D+L R G L++A   +  MP +P+  +W SLLS  RN G  +IG
Sbjct: 567 NFHGIEPKLEHYACVMDMLGRAGRLDDALRLVHEMPEQPDSRVWSSLLSFCRNFGELEIG 626

Query: 505 EYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGV 564
           +  A  L+++ P  +  YV LSN+YA +G+WD V  VR+M+K  G +KD G S IE  G 
Sbjct: 627 QIVAEKLLELEPKNVENYVSLSNLYAGSGRWDDVRRVRQMIKDIGLQKDAGCSWIELGGK 686

Query: 565 LHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSER 624
           +H FV GD   PQ+ E+     ++  K+   G+ P+T+ VL  ++++K+ E +L  HSE+
Sbjct: 687 VHSFVAGDNLLPQSKEMSMTWRKLEKKMCKIGYKPNTSAVLHDVDEEKKIE-KLRGHSEK 745

Query: 625 LAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCS 684
           LAI FGL+N    + +RI KNLR+C DCH+ +K +S +  REII+RDN RFHHFK+G CS
Sbjct: 746 LAICFGLLNTTKGTTLRIFKNLRICVDCHNASKFMSEVTGREIIIRDNKRFHHFKDGLCS 805

Query: 685 CKDFW 689
           C D+W
Sbjct: 806 CGDYW 810



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 133/484 (27%), Positives = 230/484 (47%), Gaps = 32/484 (6%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLY-----VDPHINNLHYARSIFDRILQHPSLVLYNL 92
           + +H + +K  L+    + + L+++Y     VD  +   HY        +   +LV +N 
Sbjct: 51  EVIHGMVIKMGLLLDVFVGNALIAMYGKFGFVDAAVKVFHY--------MPVRNLVSWNS 102

Query: 93  LIKCYVFNQRSHEALTLFCDLL--DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFK 150
           +I  +  N  S +   +  +++  +  LLPD  TL  V+   AR   ++ G +IHGL  K
Sbjct: 103 IISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVK 162

Query: 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
           LG   D  V +SLV MY+K G +   + +FD  + K+ VSWN +I G   KG +  A  L
Sbjct: 163 LGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNL 222

Query: 211 FDEM---PDRDLFSWTCLVDGFSKCGKVEIAR--------EIFYRMPNRNLVSWNAMING 259
           F EM    D ++   T L +    C ++   R         I +      LV+ N  +  
Sbjct: 223 FREMQMQEDIEVNEVTVL-NILPACLEISQLRSLKELHGYSIRHGFQYDELVA-NGFVAA 280

Query: 260 YMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATL 319
           Y K G +  A  +F  ME + + +WN++I G   NG   +AL L   M    ++P+  T+
Sbjct: 281 YAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTI 340

Query: 320 VSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK 379
            S L A A L  L  G+ +H +++++G  +D  +G  L+ +Y  CG   SA  +F  + +
Sbjct: 341 GSLLLASAHLKSLRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEE 400

Query: 380 KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRY 439
           K    W AMI G   +G+   AL LF K+   G +P+ I  + VL ACS    +  G+  
Sbjct: 401 KSSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACSQQSALRLGKET 460

Query: 440 FNMMINDYGIEPTIEHYGC-LVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNH 498
               +    +E       C  +D+  ++G ++E++S  + +  + +   W ++++    H
Sbjct: 461 HCYALKALLMEDVF--VACSTIDMYAKSGCIKESRSVFDGLKNK-DLASWNAIIAAYGVH 517

Query: 499 GNKD 502
           G+ +
Sbjct: 518 GDGE 521



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 118/417 (28%), Positives = 199/417 (47%), Gaps = 24/417 (5%)

Query: 100 NQRSHEALTLFCDLL-DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKF 158
           N+   +A+ +F  L+ D     DNFT PCVIK          G+ IHG+V K+G   D F
Sbjct: 8   NELYSDAIDMFVKLITDTEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDVF 67

Query: 159 VLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRD 218
           V ++L++MY KFG +D   +VF  M  ++LVSWN +I G+ + G  +    +  EM   +
Sbjct: 68  VGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGE 127

Query: 219 ---LFSWTCLVDGFSKCGKVEIAREIFYRMPNR------------NLVSWNAMINGYMKA 263
              L     LV     C     ARE+  +M  R            ++   N++++ Y K 
Sbjct: 128 EGLLPDIATLVTVLPVC-----AREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKC 182

Query: 264 GDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIG-DVLPNDATLVSA 322
           G +  A  LFD    ++ ++WN+MI G    G   EA  L   M +  D+  N+ T+++ 
Sbjct: 183 GYLTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNI 242

Query: 323 LSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKV 382
           L A   ++ L   + +H Y +++GF  D ++    +  Y+KCG +  A  VF ++  K V
Sbjct: 243 LPACLEISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTV 302

Query: 383 GHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNM 442
             W A+I G   +G   +AL+L+ +M   G+ P   T   +L A +H   +  G+     
Sbjct: 303 NSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGF 362

Query: 443 MINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
           ++  +G+E        L+ +    G    A+   + M  + + V W +++SG   +G
Sbjct: 363 VLR-HGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSS-VSWNAMISGYSQNG 417


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 234/629 (37%), Positives = 347/629 (55%), Gaps = 34/629 (5%)

Query: 82   LQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEG 141
            LQ   LV ++ +I   V      EAL+LF ++ ++ + P+  TL  ++   A L  +K G
Sbjct: 390  LQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLG 449

Query: 142  KQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKK 201
            K IH    K     D    ++LVSMYAK G        F+ M  +D+V+WN LI+GY + 
Sbjct: 450  KSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQI 509

Query: 202  GEVEVAMKLFDEM------PD--------------RDLFSWTCLVDGFSKCGKVEIAREI 241
            G+   A+ +F ++      PD               DL   TC+     K G        
Sbjct: 510  GDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGF------- 562

Query: 242  FYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEI-RDLITWNSMIAGYELNGRFMEA 300
                   +    NA+I+ Y K G + SA  LF+  +  +D +TWN +IA Y  NG   EA
Sbjct: 563  -----ESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEA 617

Query: 301  LELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQM 360
            +     M + +  PN  T VS L A A LA   +G   H+ I++ GF+ + ++G  LI M
Sbjct: 618  ISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDM 677

Query: 361  YSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITF 420
            Y+KCG +  +  +F  +  K    W AM+ G  +HG   +A+ LF+ M    ++  +++F
Sbjct: 678  YAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSF 737

Query: 421  IGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP 480
            + VL+AC H GLV +GR+ F+ M + Y I+P +EHY C+VD+L R G  +E    I+ MP
Sbjct: 738  VSVLSACRHXGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMP 797

Query: 481  MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSE 540
            + P+  +W +LL   R H N  +GE A ++L+K+ P     +VVLS+IYA +G+W    +
Sbjct: 798  VEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGK 857

Query: 541  VREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPD 600
             R  M   G +K PG S +E +  +H F VGDKSHPQ + +H   + +  K++  G+VPD
Sbjct: 858  ARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIGYVPD 917

Query: 601  TTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLS 660
             + VL  +E++ +KE  L +HSERLAI F L+N    S I+IVKNLRVC DCH+ TK +S
Sbjct: 918  RSCVLQNVEEE-DKEMFLYSHSERLAITFALLNTPPGSTIQIVKNLRVCADCHTTTKFIS 976

Query: 661  GIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
             I  R IIVRD +RFHHF++G CSC D+W
Sbjct: 977  KITTRRIIVRDATRFHHFEDGICSCNDYW 1005



 Score =  231 bits (590), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 164/540 (30%), Positives = 267/540 (49%), Gaps = 16/540 (2%)

Query: 23  LHWNILKFSSTH-KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRI 81
           LH+  L  S  H     Q+HA  + +   +H  I+  L++LY   H  +L  ARS+FD  
Sbjct: 33  LHYPRLLSSCKHLNPLLQIHAQIIVSGFKHHHSIT-HLINLYSLFHKCDL--ARSVFDST 89

Query: 82  LQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEG 141
             +PS +L+N +I+ Y  +++ +EAL ++  ++++ L PD +T   V+K       ++EG
Sbjct: 90  -PNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEG 148

Query: 142 KQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKK 201
              HG + + G   D F+ + LV MY+K G++   R VFD M  +D+V+WN +I G  + 
Sbjct: 149 VWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQS 208

Query: 202 GEVEVAMKLFDEMP----DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSW--NA 255
            +   A+  F  M     +    S   L  G  K   +E+ R I   +  R+  S   N 
Sbjct: 209 EDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVSNG 268

Query: 256 MINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPN 315
           +I+ Y K GDVD A  +FD M  +D ++W +M+AGY  NG F+E LEL + M +G+V  N
Sbjct: 269 LIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRIN 328

Query: 316 DATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFR 375
             + VSA  A A    L KG+ +H   ++     D ++ T L+ MY+KCG  E A  +F 
Sbjct: 329 KVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFW 388

Query: 376 AISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVND 435
            +  + +  W+A+I  L   G   +AL LF +M    MKP  +T + +L AC+   L+  
Sbjct: 389 GLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKL 448

Query: 436 GRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGA 495
           G+      +    ++  +     LV +  + G+   A +T   M  R + V W SL++G 
Sbjct: 449 GKSIHCFTVKA-DMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSR-DIVTWNSLINGY 506

Query: 496 RNHGN--KDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKD 553
              G+    I  +    L  + PD  G  V +    A     D+ + +  ++ K GF  D
Sbjct: 507 AQIGDPYNAIDMFYKLRLSAINPDA-GTMVGVVPACALLNDLDQGTCIHGLIVKLGFESD 565



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 137/489 (28%), Positives = 232/489 (47%), Gaps = 20/489 (4%)

Query: 51  YHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLF 110
           + S +S+ L+ LY      ++  AR +FD+++     V +  ++  Y  N    E L LF
Sbjct: 261 FSSAVSNGLIDLY--SKCGDVDVARRVFDQMVDQDD-VSWGTMMAGYAHNGCFVEVLELF 317

Query: 111 CDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKF 170
             +    +  +  +       AA    +++GK+IHG   +     D  V + L+ MYAK 
Sbjct: 318 DKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKC 377

Query: 171 GEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDR-DLFSW- 222
           GE +  +++F  +  +DLV+W+ +I   V+ G  E A+ LF EM      P+R  L S  
Sbjct: 378 GETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSIL 437

Query: 223 -TCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDL 281
             C      K GK      +   M + +L +  A+++ Y K G   +A   F+ M  RD+
Sbjct: 438 PACADLSLLKLGKSIHCFTVKADM-DSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDI 496

Query: 282 ITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSY 341
           +TWNS+I GY   G    A+++   + +  + P+  T+V  + A A L  L++G  +H  
Sbjct: 497 VTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGL 556

Query: 342 IVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRA--ISKKKVGHWTAMIVGLGMHGMAT 399
           IVK GF  D  +   LI MY+KCGS+ SA  +F     +K +V  W  +I     +G A 
Sbjct: 557 IVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVT-WNVIIAAYMQNGHAK 615

Query: 400 QALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCL 459
           +A+  F++M      P ++TF+ VL A ++     +G   F+  I   G          L
Sbjct: 616 EAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMA-FHACIIQMGFLSNTLVGNSL 674

Query: 460 VDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG--ARNHGNKDIGEYAANNLIKVAPD 517
           +D+  + G L  ++     M  + + V W ++LSG     HG++ I  ++     +V  D
Sbjct: 675 IDMYAKCGQLXYSEKLFNEMDHK-DTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQID 733

Query: 518 TIGCYVVLS 526
           ++    VLS
Sbjct: 734 SVSFVSVLS 742



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 123/260 (47%), Gaps = 12/260 (4%)

Query: 40  LHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVF 99
           +H L VK        + + L+ +Y      +L  A  +F++       V +N++I  Y+ 
Sbjct: 553 IHGLIVKLGFESDCHVKNALIDMYAK--CGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQ 610

Query: 100 NQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFV 159
           N  + EA++ F  +      P++ T   V+  AA L A +EG   H  + ++GF  +  V
Sbjct: 611 NGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLV 670

Query: 160 LSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR-- 217
            +SL+ MYAK G++    ++F+ MD KD VSWN ++ GY   G  + A+ LF  M +   
Sbjct: 671 GNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQV 730

Query: 218 --DLFSWTCLVDGFSKCGKVEIAREIFYRMPNR-----NLVSWNAMINGYMKAGDVDSAC 270
             D  S+  ++      G VE  R+IF+ M ++     +L  +  M++   +AG  D   
Sbjct: 731 QIDSVSFVSVLSACRHXGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETL 790

Query: 271 ELFDDMEIR-DLITWNSMIA 289
                M +  D   W +++ 
Sbjct: 791 GFIKVMPVEPDAGVWGALLG 810


>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/478 (44%), Positives = 304/478 (63%), Gaps = 5/478 (1%)

Query: 216 DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDD 275
           + D +    L+D + KCG +  AR++F +M  R++ SWNA+I GYMK G++  A +LF+ 
Sbjct: 139 EGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFER 198

Query: 276 MEIRDLITWNSMIAGYELNGRFMEALELLETMLI--GDVLPNDATLVSALSAVAGLAVLN 333
           ME R++++W +MI+GY  NG   +AL L + ML    ++ PN  T+VS L A A  A L 
Sbjct: 199 MEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALE 258

Query: 334 KGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK--KKVGHWTAMIVG 391
           +GR +H +    G  ++  + T L  MY+KC S+  A   F  I++  K +  W  MI  
Sbjct: 259 RGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITA 318

Query: 392 LGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP 451
              HG   +A+ +F  M R G++P A+TF+G+L+ CSH+GL++ G  +FN M   + +EP
Sbjct: 319 YASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEP 378

Query: 452 TIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNL 511
            +EHY C+VD+L R G L EAK  I  MPM+    +W +LL+  R+H N +I E AA  L
Sbjct: 379 RVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRL 438

Query: 512 IKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVG 571
             + PD  G YV+LSN+YA AG W++V ++R ++K +G +K PG S IE  G  H F+  
Sbjct: 439 FVLEPDNSGNYVLLSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGA 498

Query: 572 DKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGL 631
           DKSHPQ  EI+  L  +  K+K AG++PDT+ VL  I ++ EKE  L  HSE+LAIAFGL
Sbjct: 499 DKSHPQAKEIYKFLEALPEKIKMAGYIPDTSFVLHDISEE-EKEYNLTTHSEKLAIAFGL 557

Query: 632 INVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           +N +    +R+ KNLR+C DCH+ TK +S IY REIIVRD +RFH FK+GSCSC D+W
Sbjct: 558 LNTRPGVVLRVTKNLRICGDCHAATKFISKIYEREIIVRDLNRFHCFKDGSCSCGDYW 615



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 113/403 (28%), Positives = 175/403 (43%), Gaps = 86/403 (21%)

Query: 118 LLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGR 177
           LL DNFTLP V+K  A L  +  G+ +HG   ++G   D +V +SL+ MY K G I   R
Sbjct: 103 LLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDAR 162

Query: 178 RVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEI 237
           ++FD M  +D+ SWN LI GY+K+GE+ VA  LF+ M  R++ SWT ++ G+++ G  E 
Sbjct: 163 KLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQ 222

Query: 238 AREIFYRM--------PN---------------------------------RNLVSWNAM 256
           A  +F  M        PN                                  N     A+
Sbjct: 223 ALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTAL 282

Query: 257 INGYMKAGDVDSACELFDDMEI--RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLP 314
              Y K   +  A   FD +    ++LI WN+MI  Y  +G  +EA+ + E ML   V P
Sbjct: 283 AGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQP 342

Query: 315 NDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVF 374
           +  T +  LS  +           HS ++  G           +  ++  G+I S     
Sbjct: 343 DAVTFMGLLSGCS-----------HSGLIDAG-----------LNHFNDMGTIHSV---- 376

Query: 375 RAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNAC-SHAGLV 433
               + +V H+  ++  LG  G   +A +L ++   M M+     +  +L AC SH  L 
Sbjct: 377 ----EPRVEHYACVVDLLGRAGRLVEAKELISQ---MPMQAGPSVWGALLAACRSHRNLE 429

Query: 434 N---DGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAK 473
                 RR F +  ++ G      +Y  L ++    G  EE K
Sbjct: 430 IAELAARRLFVLEPDNSG------NYVLLSNLYAEAGMWEEVK 466



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 105/255 (41%), Gaps = 37/255 (14%)

Query: 301 LELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQM 360
           LE    M    +L ++ TL   L + A L+ +  GR +H   ++ G   D  +G  LI M
Sbjct: 92  LEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDM 151

Query: 361 YSKCGSIESALT-------------------------------VFRAISKKKVGHWTAMI 389
           Y KCG I  A                                 +F  +  + +  WTAMI
Sbjct: 152 YVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMI 211

Query: 390 VGLGMHGMATQALDLFNKMCRMG--MKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDY 447
            G   +G A QAL LF++M + G  MKP  +T + VL AC+ +  +  GRR  +   N  
Sbjct: 212 SGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFA-NGI 270

Query: 448 GIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMR-PNFVIWMSLLSGARNHGNKDIGEY 506
           G+         L  +  +   L EA+   + +     N + W ++++   +HG       
Sbjct: 271 GLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVS 330

Query: 507 AANNLIK--VAPDTI 519
              N+++  V PD +
Sbjct: 331 IFENMLRAGVQPDAV 345


>gi|356529924|ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 694

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 230/652 (35%), Positives = 384/652 (58%), Gaps = 18/652 (2%)

Query: 52  HSGIS--SRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTL 109
           HS IS  + L+ LYV      L  AR++FD  +   ++V +N+L+  Y+      E L L
Sbjct: 47  HSHISHLNSLVHLYVK--CGQLGLARNLFD-AMPLRNVVSWNVLMAGYLHGGNHLEVLVL 103

Query: 110 FCDLLD-RFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYA 168
           F +++  +   P+ +     +   +  G +KEG Q HGL+FK G    ++V S+LV MY+
Sbjct: 104 FKNMVSLQNACPNEYVFTTALSACSHGGRVKEGMQCHGLLFKFGLVCHQYVKSALVHMYS 163

Query: 169 KFGEIDLGRRVFDAMDDK---DLVSWNCLIDGYVKKGE----VEVAMKLFDEMPDRDLFS 221
           +   ++L  +V D +  +   D+ S+N +++  V+ G     VEV  ++ DE    D  +
Sbjct: 164 RCSHVELALQVLDTVPGEHVNDIFSYNSVLNALVESGRGEEAVEVLRRMVDECVAWDHVT 223

Query: 222 WTCLVDGFSKCGKVEIAREIFYRMPNRNLV----SWNAMINGYMKAGDVDSACELFDDME 277
           +  ++   ++   +++   +  R+    L+      + +I+ Y K G+V +A  +FD ++
Sbjct: 224 YVGVMGLCAQIRDLQLGLRVHARLLRGGLMFDEFVGSMLIDMYGKCGEVLNARNVFDGLQ 283

Query: 278 IRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRW 337
            R+++ W +++  Y  NG F E+L L   M     LPN+ T    L+A AG+A L  G  
Sbjct: 284 NRNVVVWTALMTAYLQNGYFEESLNLFTCMDREGTLPNEYTFAVLLNACAGIAALRHGDL 343

Query: 338 MHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGM 397
           +H+ + K GF    ++   LI MYSK GSI+S+  VF  +  + +  W AMI G   HG+
Sbjct: 344 LHARVEKLGFKNHVIVRNALINMYSKSGSIDSSYNVFTDMIYRDIITWNAMICGYSHHGL 403

Query: 398 ATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYG 457
             QAL +F  M      P  +TFIGVL+A SH GLV +G  Y N ++ ++ IEP +EHY 
Sbjct: 404 GKQALQVFQDMVSAEECPNYVTFIGVLSAYSHLGLVKEGFYYLNHLMRNFKIEPGLEHYT 463

Query: 458 CLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPD 517
           C+V +L R G L+EA++ +++  ++ + V W +LL+    H N D+G   A +++++ P 
Sbjct: 464 CMVALLSRAGLLDEAENFMKTTQVKWDVVAWRTLLNACHVHRNYDLGRRIAESVLQMDPH 523

Query: 518 TIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQ 577
            +G Y +LSN+YA A +WD V  +R++M++R  +K+PG+S ++ R  +H F+    +HP+
Sbjct: 524 DVGTYTLLSNMYAKARRWDGVVTIRKLMRERNIKKEPGASWLDIRNDIHVFLSEGSNHPE 583

Query: 578 TDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSR 637
           + +I+ K+ ++   +K  G+VP+   VL  +ED+ +KE  L  HSE+LA+A+GL+ + S 
Sbjct: 584 SIQIYKKVQQLLALIKPLGYVPNIASVLHDVEDE-QKEGYLSYHSEKLALAYGLMKIPSP 642

Query: 638 SPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           +PIRI+KNLR+C+DCH+  KL+S + NR IIVRD +RFHHF++GSC+C D W
Sbjct: 643 APIRIIKNLRMCDDCHTAVKLISKVTNRLIIVRDANRFHHFRDGSCTCLDHW 694


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 233/682 (34%), Positives = 359/682 (52%), Gaps = 81/682 (11%)

Query: 88  VLYNLLIKCYVFNQRSHEALTLFCDLLDR-FLLPDNFTLPCVIKGAARLG--AIKEGKQI 144
           VL+N ++  +     +  A+++F  LL    L PD+++   +I    ++   A     Q+
Sbjct: 128 VLHNAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQL 187

Query: 145 HGLVFKLGFGF----------------------------------DKFVLSSLVSMYAKF 170
           H  V K G                                     D    +++V  Y + 
Sbjct: 188 HCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRR 247

Query: 171 GEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR----DLFSWT--- 223
           G+++  R VF+ +D K  V WN +I GYV+ G    A +LF  M       D F++T   
Sbjct: 248 GDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVL 307

Query: 224 ------------------------------------CLVDGFSKCGKVEIAREIFYRMPN 247
                                                LV  +SK GK+ IA+ IF  M  
Sbjct: 308 SACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNL 367

Query: 248 RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETM 307
           +++VSWN +++GY+ +G +D A E+F  M  ++ ++W  M++GY   G   +AL+L   M
Sbjct: 368 KDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQM 427

Query: 308 LIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSI 367
              DV P D T   A++A   L  L  GR +H+++V+ GF      G  L+ MY+KCG++
Sbjct: 428 RAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAV 487

Query: 368 ESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNAC 427
             A  VF  +       W AMI  LG HG   +AL+LF++M   G+ P  I+F+ +L AC
Sbjct: 488 NDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTAC 547

Query: 428 SHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVI 487
           +HAGLV++G  YF  M  D+GI P  +HY  L+D+L R+G + EA+  I++MP  P   I
Sbjct: 548 NHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSI 607

Query: 488 WMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547
           W ++LSG R +G+ + G YAA+ L ++ P   G Y++LSN Y+AAG+W   + VR++M+ 
Sbjct: 608 WEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLMRD 667

Query: 548 RGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLC 607
           RG +K+PG S IE    +H F+VGD  HP+  E++  L  +  +++  G+VPDT  VL  
Sbjct: 668 RGVKKEPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVIGARMRKLGYVPDTKFVLHD 727

Query: 608 IEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREI 667
           +E   EKE  L  HSE+LA+ FGL+ +   + + ++KNLR+C DCH+    +S    REI
Sbjct: 728 MEPH-EKEYILFAHSEKLAVGFGLLKLPPGATVTVLKNLRICGDCHTAMMFMSKAVGREI 786

Query: 668 IVRDNSRFHHFKNGSCSCKDFW 689
           +VRD  RFHHFK+G CSC ++W
Sbjct: 787 VVRDVRRFHHFKDGECSCGNYW 808



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 106/427 (24%), Positives = 193/427 (45%), Gaps = 48/427 (11%)

Query: 69  NNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCV 128
            +++ ARS+F+ +      V++N +I  YV +    +A  LF  ++   +  D FT   V
Sbjct: 248 GDVNAARSVFEEV-DGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSV 306

Query: 129 IKGAARLGAIKEGKQIHGLVFKLGFGFDK----FVLSSLVSMYAKFGEIDLGRRVFDAMD 184
           +   A  G    GK +HG + +L   F       V ++LV++Y+K G+I + +R+FD M+
Sbjct: 307 LSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMN 366

Query: 185 DKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYR 244
            KD+VSWN ++ GY+  G ++ A+++F  MP ++  SW  +V G+   G  E A ++F +
Sbjct: 367 LKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQ 426

Query: 245 MPNRNL---------------------------------------VSWNAMINGYMKAGD 265
           M   ++                                        + NA++  Y K G 
Sbjct: 427 MRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGA 486

Query: 266 VDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSA 325
           V+ A  +F  M   D ++WN+MI+    +G   EALEL + M+   + P+  + ++ L+A
Sbjct: 487 VNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTA 546

Query: 326 VAGLAVLNKG-RWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGH 384
                ++++G  +  S     G          LI +  + G I  A  + + +  +    
Sbjct: 547 CNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPS 606

Query: 385 -WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMM 443
            W A++ G   +G         +++ RM  +    T+I + N  S AG   D  R   +M
Sbjct: 607 IWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDG-TYILLSNTYSAAGRWVDAARVRKLM 665

Query: 444 INDYGIE 450
             D G++
Sbjct: 666 -RDRGVK 671



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 132/294 (44%), Gaps = 49/294 (16%)

Query: 59  LLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFL 118
           +LS Y+D     L  A  +F +++ + + + + +++  YV    S +AL LF  +    +
Sbjct: 376 ILSGYIDS--GCLDKAVEVF-KVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDV 432

Query: 119 LPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRR 178
            P ++T    I     LGA+K G+Q+H  + + GF       ++L++MYAK G ++  R 
Sbjct: 433 KPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARL 492

Query: 179 VFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDRDLF------------ 220
           VF  M + D VSWN +I    + G    A++LFD+M      PDR  F            
Sbjct: 493 VFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGL 552

Query: 221 ----------------------SWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS-WNAMI 257
                                  +  L+D   + G++  AR++   MP     S W A++
Sbjct: 553 VDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAIL 612

Query: 258 NGYMKAGDVD----SACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETM 307
           +G    GD++    +A +LF  +   D  T+  +   Y   GR+++A  + + M
Sbjct: 613 SGCRTNGDMEFGAYAADQLFRMIPQHD-GTYILLSNTYSAAGRWVDAARVRKLM 665



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 73/318 (22%), Positives = 129/318 (40%), Gaps = 47/318 (14%)

Query: 241 IFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEI--RDLITWNSMIAGYELNGRFM 298
           +F   P+   V+  +++  +  AG +  A   FD +    RD +  N+M++ +       
Sbjct: 85  LFRSDPDPGPVAATSLVAAHAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAA 144

Query: 299 EALELLETML-IGDVLPNDATLVSALSAVAGLAVLNKGR--WMHSYIVKNGFVVDGVLGT 355
            A+ +   +L  G + P+D +  + +SAV  +  L       +H  ++K+G      +  
Sbjct: 145 PAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSN 204

Query: 356 LLIQMYSKC----------------------------------GSIESALTVFRAISKKK 381
            LI +Y KC                                  G + +A +VF  +  K 
Sbjct: 205 ALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKF 264

Query: 382 VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFN 441
              W AMI G    GM   A +LF +M    +     TF  VL+AC++AG    G+    
Sbjct: 265 DVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHG 324

Query: 442 MMIN---DYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNH 498
            +I    ++  E  +     LV +  + G +  AK   ++M ++ + V W ++LSG  + 
Sbjct: 325 QIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLK-DVVSWNTILSGYIDS 383

Query: 499 GNKDIGEYAANNLIKVAP 516
           G  D     A  + KV P
Sbjct: 384 GCLD----KAVEVFKVMP 397


>gi|414880744|tpg|DAA57875.1| TPA: hypothetical protein ZEAMMB73_657034, partial [Zea mays]
          Length = 1822

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 206/461 (44%), Positives = 299/461 (64%), Gaps = 2/461 (0%)

Query: 229  FSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMI 288
            ++  G V  +R  F  +   ++V   AM+      GDVD+A +LFD M  RD + W++MI
Sbjct: 1364 YAALGDVASSRAAFAEIACPDVVCVTAMVAALAAGGDVDAARDLFDGMPQRDHVAWSAMI 1423

Query: 289  AGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFV 348
            AGY   GR  EAL L + ML       +ATLVS L+A A +  L++G+W+H Y+   G  
Sbjct: 1424 AGYMHVGRSREALMLFDEMLSAGTTVGEATLVSVLTACAQIGTLDRGKWVHWYVRSRGMQ 1483

Query: 349  VDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKM 408
            +   LGT L+ MYSKCG++ +A+ VF +++++ V  WT+ + GL M+GM T+ L LF +M
Sbjct: 1484 MSIKLGTALVDMYSKCGAVVTAMEVFESMAERNVYTWTSAVSGLAMNGMGTECLQLFKRM 1543

Query: 409  CRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGY 468
               G++P  ++F+ VL  CS AGLV++GR  F+ M + YG++P  EHYGC+VD+  R G 
Sbjct: 1544 EGAGIQPNGVSFVAVLRGCSMAGLVDEGRACFDSM-DKYGVDPWPEHYGCMVDLYGRAGR 1602

Query: 469  LEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNI 528
            L++A S I  MPM P+  +W +LL+ +R H + D+G+YA + L+ +  +    +V LSNI
Sbjct: 1603 LDDAISFINDMPMEPHEGVWGALLNASRIHNSVDLGKYALDKLLAIESENDAAHVQLSNI 1662

Query: 529  YAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEM 588
            YA +  W  VS VR MMK +G +K PG S+IE  G +HEF VG + HP+ +EI   L+EM
Sbjct: 1663 YAESQNWKGVSRVRGMMKAKGVKKVPGWSTIEVDGKVHEFYVGGRLHPRYNEIELMLAEM 1722

Query: 589  RNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRV 648
              +L+  G+  +T +VL  IE++ EKE  +  HSE+LA+AFGLI +     IRIVKNLRV
Sbjct: 1723 DRRLRLQGYTANTREVLFDIEEE-EKEGAISLHSEKLALAFGLIVLPEDVEIRIVKNLRV 1781

Query: 649  CNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            C DCH   KL+S ++NREI++RD +RFHHFK G CSC+D+W
Sbjct: 1782 CMDCHRYIKLVSKVFNREIVMRDRNRFHHFKGGECSCRDYW 1822



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 101/414 (24%), Positives = 173/414 (41%), Gaps = 65/414 (15%)

Query: 38   QQLHA-LSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVL-YNLLIK 95
            + LHA L V   L   S +++ L SL      N+L YAR +     Q P+ +L +N  I+
Sbjct: 1228 RALHAHLVVSGRLASPSHLAAFLASLASS---NHLSYARLVLP---QRPATLLAHNAFIR 1281

Query: 96   CYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKG--------------AARLGAIKEG 141
                  R   A   F DL    L PD+++L  +++               +A + A  + 
Sbjct: 1282 ALARGPRPCLAFAAFRDLP---LPPDHYSLNFLVRAATALVASAAEEKHVSAEVNARLQA 1338

Query: 142  KQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKK 201
               HG   + G   D  V S ++SMYA  G++   R  F  +   D+V    ++      
Sbjct: 1339 VSAHGAAVRWGHAADPHVQSGVLSMYAALGDVASSRAAFAEIACPDVVCVTAMVAALAAG 1398

Query: 202  GEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM-------PNRNLVS-- 252
            G+V+ A  LFD MP RD  +W+ ++ G+   G+   A  +F  M           LVS  
Sbjct: 1399 GDVDAARDLFDGMPQRDHVAWSAMIAGYMHVGRSREALMLFDEMLSAGTTVGEATLVSVL 1458

Query: 253  -------------W-----------------NAMINGYMKAGDVDSACELFDDMEIRDLI 282
                         W                  A+++ Y K G V +A E+F+ M  R++ 
Sbjct: 1459 TACAQIGTLDRGKWVHWYVRSRGMQMSIKLGTALVDMYSKCGAVVTAMEVFESMAERNVY 1518

Query: 283  TWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYI 342
            TW S ++G  +NG   E L+L + M    + PN  + V+ L   +   ++++GR     +
Sbjct: 1519 TWTSAVSGLAMNGMGTECLQLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVDEGRACFDSM 1578

Query: 343  VKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS-KKKVGHWTAMIVGLGMH 395
             K G          ++ +Y + G ++ A++    +  +   G W A++    +H
Sbjct: 1579 DKYGVDPWPEHYGCMVDLYGRAGRLDDAISFINDMPMEPHEGVWGALLNASRIH 1632


>gi|225460265|ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Vitis vinifera]
          Length = 610

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 220/603 (36%), Positives = 351/603 (58%), Gaps = 44/603 (7%)

Query: 129 IKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDL 188
           ++  AR  +   GK++H  + K G    K + ++L++MY K G I     +F+ +  +D 
Sbjct: 10  LQACARHQSPPIGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQLPHRDP 69

Query: 189 VSWN-----------------------------------------CLIDGYVKKGEVEVA 207
           +SW                                          C I G +K+G+   A
Sbjct: 70  ISWASILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQGKQVHA 129

Query: 208 MKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVD 267
             +   + D D+   + LVD ++KCG  +I R +F  + ++N +SW AMI+GY ++G   
Sbjct: 130 TFIVSPVSDDDVVK-SSLVDMYAKCGLPDIGRVVFDSISSKNSISWTAMISGYAQSGRKL 188

Query: 268 SACELFDDMEIRDLITWNSMIAGYELNGRFMEALEL-LETMLIGDVLPNDATLVSALSAV 326
            A +LF  M +++L++W ++I+G   +G ++++  L +E    G  + +   L S + A 
Sbjct: 189 DAIQLFQKMPVKNLLSWTALISGLVQSGNWVDSFYLFMEMRSKGIDIVDPFILSSIIGAS 248

Query: 327 AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWT 386
           A LAVL  G+ +H  ++  G+     +   L+ MY+KC  + +A  +F  + ++ +  WT
Sbjct: 249 ANLAVLGLGKQIHCLVILLGYESSLFVSNALVDMYAKCSDVLAAKKIFGRMVQRDIVSWT 308

Query: 387 AMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIND 446
           ++IVG   HG+A +AL L+N+M   G+KP  +TF+G++ ACSH GLV+ GR +FN MI D
Sbjct: 309 SIIVGTAQHGLAEEALSLYNRMLSTGLKPNEVTFVGLIYACSHVGLVSKGRYFFNSMIKD 368

Query: 447 YGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEY 506
           YGI P+++HY CL+D+L R+G+LEEA++ I++MP +P+   W +LLS   +H N  IG  
Sbjct: 369 YGINPSLQHYTCLLDLLSRSGHLEEAENLIKAMPFKPDEATWAALLSACNHHRNTLIGIR 428

Query: 507 AANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLH 566
            A++L+ + P+    Y++LSNIYA+A  W+ VS+VR +M     +K+PG S I       
Sbjct: 429 VADHLLSLKPEDPSTYILLSNIYASAAMWESVSKVRRLMAAMEVKKEPGYSCIVLGKESQ 488

Query: 567 EFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLA 626
            F+ G+ SHP  +EI   L E+  ++K  G++PDT+ VL  +E Q+EKE +L  HSERLA
Sbjct: 489 VFLAGETSHPAKEEIFGLLEELDAEMKKRGYIPDTSSVLHDLE-QQEKERQLFWHSERLA 547

Query: 627 IAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCK 686
           +A+GL+       + IVKNLRVC DCH+V K +S I  REI+VRD +R+HHFK+G CSC 
Sbjct: 548 VAYGLLKGIPGMVLHIVKNLRVCGDCHTVLKFISIIVKREIVVRDANRYHHFKDGKCSCN 607

Query: 687 DFW 689
           +FW
Sbjct: 608 NFW 610



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 125/471 (26%), Positives = 223/471 (47%), Gaps = 59/471 (12%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           ++LH   +KT +     +S+ L+++Y    +  +  A ++F++ L H   + +  ++   
Sbjct: 23  KKLHCHIIKTGIDQCKSLSNNLINMYGKCGL--IQDALNLFNQ-LPHRDPISWASILTAN 79

Query: 98  VFNQRSHEALTLFCDLLDR-FLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFD 156
                 H  L++F  +  +  L PD++   C++K  A LGA+K+GKQ+H          D
Sbjct: 80  NQANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQGKQVHATFIVSPVSDD 139

Query: 157 KFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD 216
             V SSLV MYAK G  D+GR VFD++  K+ +SW  +I GY + G    A++LF +MP 
Sbjct: 140 DVVKSSLVDMYAKCGLPDIGRVVFDSISSKNSISWTAMISGYAQSGRKLDAIQLFQKMPV 199

Query: 217 RDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR---------------------------- 248
           ++L SWT L+ G  + G    +  +F  M ++                            
Sbjct: 200 KNLLSWTALISGLVQSGNWVDSFYLFMEMRSKGIDIVDPFILSSIIGASANLAVLGLGKQ 259

Query: 249 ------------NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGR 296
                       +L   NA+++ Y K  DV +A ++F  M  RD+++W S+I G   +G 
Sbjct: 260 IHCLVILLGYESSLFVSNALVDMYAKCSDVLAAKKIFGRMVQRDIVSWTSIIVGTAQHGL 319

Query: 297 FMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLG-- 354
             EAL L   ML   + PN+ T V  + A + + +++KGR+  + ++K+ + ++  L   
Sbjct: 320 AEEALSLYNRMLSTGLKPNEVTFVGLIYACSHVGLVSKGRYFFNSMIKD-YGINPSLQHY 378

Query: 355 TLLIQMYSKCGSIESALTVFRAIS-KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGM 413
           T L+ + S+ G +E A  + +A+  K     W A++     H      + + + +  + +
Sbjct: 379 TCLLDLLSRSGHLEEAENLIKAMPFKPDEATWAALLSACNHHRNTLIGIRVADHL--LSL 436

Query: 414 KPT-AITFIGVLNACSHAGL---VNDGRRYFNMMINDYGIEPTIEHYGCLV 460
           KP    T+I + N  + A +   V+  RR    M  +   EP    Y C+V
Sbjct: 437 KPEDPSTYILLSNIYASAAMWESVSKVRRLMAAM--EVKKEPG---YSCIV 482


>gi|345505206|gb|AEN99827.1| chlororespiratory reduction 4, partial [Aethionema grandiflorum]
          Length = 594

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 240/581 (41%), Positives = 328/581 (56%), Gaps = 43/581 (7%)

Query: 36  ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNL-HYARSIFDRIL-------QHPSL 87
           +  ++HA  + T LI +  +++R++  +V    + L  +AR +F           +    
Sbjct: 7   DXNKMHARLITTGLIKNPNLTTRIVLAFVASRRSYLAEFARCVFYEYYLCSFSAGEGEDP 66

Query: 88  VLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGL 147
            L+N +IK Y        AL LFC +++  +  D F+L  V+K  +RL  +KEG QIHG 
Sbjct: 67  YLWNAVIKSYSHGIDPRRALLLFCLMIENGVCVDKFSLSLVLKACSRLEFLKEGMQIHGF 126

Query: 148 VFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVA 207
           + K G   D F+ + L+ +Y K G +   R+VFD M  +D VS+N +IDGYVK G ++ A
Sbjct: 127 LRKTGIWSDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLMKSA 186

Query: 208 MKLFD----------------------------------EMPDRDLFSWTCLVDGFSKCG 233
            KLFD                                  EMP++DL SW  +++G  K G
Sbjct: 187 HKLFDLMPREIKNLISWNSMISGYAQTADGLNTASKLFSEMPEKDLISWNSMINGCVKHG 246

Query: 234 KVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYEL 293
           ++E A+ +F  MP R++V+W  MI+GY K G V  A  LFD M  RD++  NSM+AGY  
Sbjct: 247 RIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKSLFDQMHQRDVVACNSMMAGYVQ 306

Query: 294 NGRFMEALELLETMLIGDVL-PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV 352
           N   MEALE+   M     L P++ TLV  LSA+A L  L+K   MH YIV+  F + G 
Sbjct: 307 NKYHMEALEIFNDMEKDSHLSPDETTLVIVLSAIAQLGRLSKAMSMHVYIVEKRFPLGGK 366

Query: 353 LGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG 412
           LG  LI M+SKCGSI+ A++VF  I  K + HW AMI GL +HG+   A D+  ++ R  
Sbjct: 367 LGVALIDMHSKCGSIQHAISVFEGIENKSIDHWNAMIGGLAIHGLGELAFDMLMQIERCS 426

Query: 413 MKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEA 472
           ++P  ITFIGVLNACSH+GLV +G   F +M   + IEP ++HYGCLVD+L R+G +E A
Sbjct: 427 IQPDXITFIGVLNACSHSGLVKEGLLCFELMRRKHXIEPRLQHYGCLVDVLSRSGSIELA 486

Query: 473 KSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAA 532
           K  IE MPM PN VIW S LS    H   + GE  A +LI  A      YV+LSN+YA+ 
Sbjct: 487 KHLIEDMPMEPNDVIWRSFLSACSTHEEFETGELVAKHLILQAGYNPSSYVLLSNMYASL 546

Query: 533 GQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDK 573
           G W  V  VR MMK+R   K PG S IE  G +HEF V DK
Sbjct: 547 GMWKDVRRVRMMMKQRKLHKIPGCSWIELDGNVHEFFVQDK 587


>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 642

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 227/583 (38%), Positives = 332/583 (56%), Gaps = 21/583 (3%)

Query: 120 PDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRV 179
           P   +   V +    L  +K G Q+H  +   G      V S +V+ YA  G+ID    V
Sbjct: 68  PPILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSV 127

Query: 180 FDAMDDKDLVSWNCLIDGYVKKGEVEVAM----KLFDEMPDR-----DLFSWTCLVDGFS 230
           F+ + D            +V K  VE+      K    +  R     DL+  T L+  + 
Sbjct: 128 FNGIGDY-------FTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYG 180

Query: 231 KCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAG 290
           KCG++  A ++F  M  R++ SWNA++ GY K+G +D+A  +F+ M  R++++W +MI+G
Sbjct: 181 KCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISG 240

Query: 291 YELNGRFMEALELLETMLIGD--VLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFV 348
           Y  +G   +AL L + M+  D  V PN  T++S L A A L+ L +GR +H    + G  
Sbjct: 241 YSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLN 300

Query: 349 VDGVLGTLLIQMYSKCGSIESALTVFRAISK--KKVGHWTAMIVGLGMHGMATQALDLFN 406
            +  +   L  MY+KCGS+  A   F  +++  K +  W  MI     +G   QA+  F 
Sbjct: 301 SNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFR 360

Query: 407 KMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRT 466
           +M + G++P  ITF G+L+ CSH+GLV+ G +YFN M   Y I P +EHY C+ D+L R 
Sbjct: 361 EMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRA 420

Query: 467 GYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLS 526
           G L EA   +  MPM     IW SLL+  R H N ++ E AA  L  + P+  G YV+LS
Sbjct: 421 GRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKLFVLEPENTGNYVLLS 480

Query: 527 NIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLS 586
           N+YA AG+W +V ++R ++K +G +K PG S IE  G  H F+ GD SHPQ  EI+  L 
Sbjct: 481 NMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEINGKAHMFLGGDTSHPQGKEIYMFLE 540

Query: 587 EMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNL 646
            +  K+KAAG+ PDT+ VL  I ++ EKE  L  HSE+LA+AFG++N  + + +R+ KNL
Sbjct: 541 ALPEKMKAAGYFPDTSYVLHDISEE-EKEFNLIAHSEKLAVAFGILNTPAETVLRVTKNL 599

Query: 647 RVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           R+C DCH+    +S IY RE+IVRD +RFHHFK G CSC D+W
Sbjct: 600 RICGDCHTAMVFISEIYGREVIVRDINRFHHFKGGCCSCGDYW 642



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 122/251 (48%), Gaps = 27/251 (10%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL--DRFLLPDNFTLPCVIKG 131
           A +IF+R+    ++V +  +I  Y  +  + +AL+LF +++  D  + P+  T+  V+  
Sbjct: 219 ALAIFERMPWR-NIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPA 277

Query: 132 AARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAM--DDKDLV 189
            A+L  ++ G+QIH L  ++G   +  VL +L +MYAK G +   R  FD +  ++K+L+
Sbjct: 278 CAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLI 337

Query: 190 SWNCLIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKCGKVEIAREIFY 243
           +WN +I  Y   G    A+  F EM      PD   F  T L+ G S  G V++  + F 
Sbjct: 338 AWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITF--TGLLSGCSHSGLVDVGLKYFN 395

Query: 244 RMPNRNLVSWNAMINGYM-------KAGDVDSACELFDDMEIRDLIT-WNSMIAGYELNG 295
            M      S N  +  Y        +AG +  A +L  +M +    + W S++A      
Sbjct: 396 HM--STTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAAC---- 449

Query: 296 RFMEALELLET 306
           R    LE+ ET
Sbjct: 450 RKHRNLEMAET 460


>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
 gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 622

 Score =  421 bits (1081), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 247/669 (36%), Positives = 373/669 (55%), Gaps = 70/669 (10%)

Query: 27  ILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPS 86
           +L+  S+  + + +H   ++T+LI    ++SRLL+L VD             D     P+
Sbjct: 18  LLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALCVD-------------DSTFNKPT 64

Query: 87  LVLYNLLIKCY-VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIH 145
               NLL   Y +F+Q  +  L +F           N  + C   GA    A        
Sbjct: 65  ----NLLGYAYGIFSQIQNPNLFVF-----------NLLIRCFSTGAEPSKA-------- 101

Query: 146 GLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVE 205
                  FGF   +L S               R++      D +++  LI    +   V 
Sbjct: 102 -------FGFYTQMLKS---------------RIW-----PDNITFPFLIKASSEMECVL 134

Query: 206 VAMKLFDEMP----DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYM 261
           V  +   ++       D++    LV  ++ CG +  A  IF +M  R++VSW +M+ GY 
Sbjct: 135 VGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYC 194

Query: 262 KAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVS 321
           K G V++A E+FD+M  R+L TW+ MI GY  N  F +A++L E M    V+ N+  +VS
Sbjct: 195 KCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVS 254

Query: 322 ALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKK 381
            +S+ A L  L  G   + Y+VK+   V+ +LGT L+ M+ +CG IE A+ VF  + +  
Sbjct: 255 VISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETD 314

Query: 382 VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFN 441
              W+++I GL +HG A +A+  F++M  +G  P  +TF  VL+ACSH GLV  G   + 
Sbjct: 315 SLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYE 374

Query: 442 MMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNK 501
            M  D+GIEP +EHYGC+VD+L R G L EA++ I  M ++PN  I  +LL   + + N 
Sbjct: 375 NMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIYKNT 434

Query: 502 DIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEH 561
           ++ E   N LIKV P+  G YV+LSNIYA AGQWDK+  +R+MMK++  +K PG S IE 
Sbjct: 435 EVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLIEI 494

Query: 562 RGVLHEFVVG-DKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELEN 620
            G +++F +G D+ HP+  +I  K  E+  K++  G+  +T      + D++EKE+ +  
Sbjct: 495 DGKINKFTMGDDQKHPEMGKIRRKWEEILGKIRLIGYKGNTGDAFFDV-DEEEKESSIHM 553

Query: 621 HSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKN 680
           HSE+LAIA+G++  K  + IRIVKNLRVC DCH+VTKL+S +Y RE+IVRD +RFHHF+N
Sbjct: 554 HSEKLAIAYGMMKTKPGTTIRIVKNLRVCEDCHTVTKLISEVYGRELIVRDRNRFHHFRN 613

Query: 681 GSCSCKDFW 689
           G CSC+D+W
Sbjct: 614 GVCSCRDYW 622


>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
 gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
          Length = 538

 Score =  421 bits (1081), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 207/527 (39%), Positives = 320/527 (60%), Gaps = 2/527 (0%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           A  +FD+I + P+  ++N + + Y  N+   + + LF  +    ++P+ FT P ++K   
Sbjct: 4   AHKVFDQIPE-PNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKSCV 62

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
           ++ A+KEG+++H  V K GF  + FV ++L+ MYA  G I    RVF  M ++++++W  
Sbjct: 63  KINALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAWTA 122

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSW 253
           +I+GY+   ++  A +LFD  P+RD+  W  ++ G+ +   V  ARE+F +MPN++++SW
Sbjct: 123 MINGYITCCDLVTARRLFDLAPERDIVLWNTMISGYIEAKDVIRARELFDKMPNKDVMSW 182

Query: 254 NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLI-GDV 312
           N ++NGY   GDV +   LF++M  R++ +WN++I GY  NG F E L   + ML+ G V
Sbjct: 183 NTVLNGYASNGDVMACERLFEEMPERNVFSWNALIGGYTRNGCFSEVLSAFKRMLVDGTV 242

Query: 313 LPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALT 372
           +PNDATLV+ LSA A L  L+ G+W+H Y   +G+  +  +   L+ MY+KCG +E+AL 
Sbjct: 243 VPNDATLVNVLSACARLGALDLGKWVHVYAESHGYKGNVYVRNALMDMYAKCGVVETALD 302

Query: 373 VFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGL 432
           VF+++  K +  W  +I GL +HG    AL+LF+ M   G  P  ITFIG+L AC+H GL
Sbjct: 303 VFKSMDNKDLISWNTIIGGLAVHGHGADALNLFSHMKIAGENPDGITFIGILCACTHMGL 362

Query: 433 VNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLL 492
           V DG  YF  M +DY I P IEHYGC+VD+L R G L  A   I  MP+  + VIW +LL
Sbjct: 363 VEDGFSYFKSMTDDYSIVPRIEHYGCIVDLLGRAGLLAHAVDFIRKMPIEADAVIWAALL 422

Query: 493 SGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRK 552
              R + N ++ E A   LI+  P     YV+LSNIY   G+W  V+ ++  M+  GF+K
Sbjct: 423 GACRVYKNVELAELALEKLIEFEPKNPANYVMLSNIYGDFGRWKDVARLKVAMRDTGFKK 482

Query: 553 DPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVP 599
            PG S IE    L EF   D+ HP+ ++I+  L  +   L+++G+VP
Sbjct: 483 LPGCSLIEVNDYLVEFYSLDERHPEKEQIYGTLRTLTKLLRSSGYVP 529



 Score = 75.9 bits (185), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 105/234 (44%), Gaps = 10/234 (4%)

Query: 266 VDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSA 325
           +++A ++FD +   +   WN+M  GY  N    + + L   M   DV+PN  T    L +
Sbjct: 1   MENAHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKS 60

Query: 326 VAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHW 385
              +  L +G  +H +++K+GF  +  + T LI MY+  G+I +A  VF  + ++ V  W
Sbjct: 61  CVKINALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAW 120

Query: 386 TAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN 445
           TAMI G         A  LF+    +  +   + +  +++    A  V   R  F+ M N
Sbjct: 121 TAMINGYITCCDLVTARRLFD----LAPERDIVLWNTMISGYIEAKDVIRARELFDKMPN 176

Query: 446 DYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
                  +  +  +++     G +   +   E MP R N   W +L+ G   +G
Sbjct: 177 K-----DVMSWNTVLNGYASNGDVMACERLFEEMPER-NVFSWNALIGGYTRNG 224


>gi|15237442|ref|NP_199458.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170604|sp|Q9FHF9.1|PP419_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g46460, mitochondrial; Flags: Precursor
 gi|10177583|dbj|BAB10814.1| unnamed protein product [Arabidopsis thaliana]
 gi|332008005|gb|AED95388.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  421 bits (1081), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 245/681 (35%), Positives = 365/681 (53%), Gaps = 71/681 (10%)

Query: 55  ISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL 114
           I + LLS  +D        AR +F+++   P + LY  +I  Y  + R  +AL LF    
Sbjct: 42  ICNHLLSRRIDE-------AREVFNQV-PSPHVSLYTKMITGYTRSNRLVDALNLF---- 89

Query: 115 DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYA------ 168
           D   + D  +   +I G    G +    ++          FD+    S+VS  A      
Sbjct: 90  DEMPVRDVVSWNSMISGCVECGDMNTAVKL----------FDEMPERSVVSWTAMVNGCF 139

Query: 169 KFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDG 228
           + G++D   R+F  M  KD  +WN ++ GY++ G+V+ A+KLF +MP +++ SWT ++ G
Sbjct: 140 RSGKVDQAERLFYQMPVKDTAAWNSMVHGYLQFGKVDDALKLFKQMPGKNVISWTTMICG 199

Query: 229 FSKCGKVEIAREIFYRM----------PNRNLVSWNA----------------------- 255
             +  +   A ++F  M          P   +++  A                       
Sbjct: 200 LDQNERSGEALDLFKNMLRCCIKSTSRPFTCVITACANAPAFHMGIQVHGLIIKLGFLYE 259

Query: 256 ------MINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLI 309
                 +I  Y     +  + ++FD+     +  W ++++GY LN +  +AL +   ML 
Sbjct: 260 EYVSASLITFYANCKRIGDSRKVFDEKVHEQVAVWTALLSGYSLNKKHEDALSIFSGMLR 319

Query: 310 GDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIES 369
             +LPN +T  S L++ + L  L+ G+ MH   VK G   D  +G  L+ MYS  G++  
Sbjct: 320 NSILPNQSTFASGLNSCSALGTLDWGKEMHGVAVKLGLETDAFVGNSLVVMYSDSGNVND 379

Query: 370 ALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSH 429
           A++VF  I KK +  W ++IVG   HG    A  +F +M R+  +P  ITF G+L+ACSH
Sbjct: 380 AVSVFIKIFKKSIVSWNSIIVGCAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSH 439

Query: 430 AGLVNDGRRYFNMMINDYG-IEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIW 488
            G +  GR+ F  M +    I+  I+HY C+VDIL R G L+EA+  IE M ++PN ++W
Sbjct: 440 CGFLEKGRKLFYYMSSGINHIDRKIQHYTCMVDILGRCGKLKEAEELIERMVVKPNEMVW 499

Query: 489 MSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548
           ++LLS  R H + D GE AA  +  +   +   YV+LSNIYA+AG+W  VS++R  MKK 
Sbjct: 500 LALLSACRMHSDVDRGEKAAAAIFNLDSKSSAAYVLLSNIYASAGRWSNVSKLRVKMKKN 559

Query: 549 GFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCI 608
           G  K PGSS +  RG  HEF  GD+  P    I+ KL  +R KLK  G+ PD    L  +
Sbjct: 560 GIMKKPGSSWVVIRGKKHEFFSGDQ--PHCSRIYEKLEFLREKLKELGYAPDYRSALHDV 617

Query: 609 EDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREII 668
           ED+ +KE  L  HSERLAIAFGLIN    S + ++KNLRVC DCH+V KL+SG+  REI+
Sbjct: 618 EDE-QKEEMLWYHSERLAIAFGLINTVEGSAVTVMKNLRVCEDCHTVIKLISGVVGREIV 676

Query: 669 VRDNSRFHHFKNGSCSCKDFW 689
           +RD  RFHHFKNG+CSC D+W
Sbjct: 677 LRDPIRFHHFKNGTCSCGDYW 697



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/390 (23%), Positives = 170/390 (43%), Gaps = 66/390 (16%)

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSW 253
           LI  ++    ++ A ++F+++P   +  +T ++ G+++  ++  A  +F  MP R++VSW
Sbjct: 41  LICNHLLSRRIDEAREVFNQVPSPHVSLYTKMITGYTRSNRLVDALNLFDEMPVRDVVSW 100

Query: 254 NAMINGYMKAGDVDSACELFDD-------------------------------MEIRDLI 282
           N+MI+G ++ GD+++A +LFD+                               M ++D  
Sbjct: 101 NSMISGCVECGDMNTAVKLFDEMPERSVVSWTAMVNGCFRSGKVDQAERLFYQMPVKDTA 160

Query: 283 TWNSMIAGYELNGRFMEALELLE-----------TMLIG-----------DVLPN----- 315
            WNSM+ GY   G+  +AL+L +           TM+ G           D+  N     
Sbjct: 161 AWNSMVHGYLQFGKVDDALKLFKQMPGKNVISWTTMICGLDQNERSGEALDLFKNMLRCC 220

Query: 316 ----DATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESAL 371
                      ++A A     + G  +H  I+K GF+ +  +   LI  Y+ C  I  + 
Sbjct: 221 IKSTSRPFTCVITACANAPAFHMGIQVHGLIIKLGFLYEEYVSASLITFYANCKRIGDSR 280

Query: 372 TVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAG 431
            VF     ++V  WTA++ G  ++     AL +F+ M R  + P   TF   LN+CS  G
Sbjct: 281 KVFDEKVHEQVAVWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQSTFASGLNSCSALG 340

Query: 432 LVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSL 491
            ++ G+    + +   G+E        LV +   +G + +A S    +  + + V W S+
Sbjct: 341 TLDWGKEMHGVAVK-LGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKI-FKKSIVSWNSI 398

Query: 492 LSGARNHGNKDIGEYAANNLIKV--APDTI 519
           + G   HG           +I++   PD I
Sbjct: 399 IVGCAQHGRGKWAFVIFGQMIRLNKEPDEI 428


>gi|212721478|ref|NP_001131178.1| uncharacterized protein LOC100192486 [Zea mays]
 gi|194690792|gb|ACF79480.1| unknown [Zea mays]
          Length = 617

 Score =  421 bits (1081), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 206/461 (44%), Positives = 299/461 (64%), Gaps = 2/461 (0%)

Query: 229 FSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMI 288
           ++  G V  +R  F  +   ++V   AM+      GDVD+A +LFD M  RD + W++MI
Sbjct: 159 YAALGDVASSRAAFAEIACPDVVCVTAMVAALAAGGDVDAARDLFDGMPQRDHVAWSAMI 218

Query: 289 AGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFV 348
           AGY   GR  EAL L + ML       +ATLVS L+A A +  L++G+W+H Y+   G  
Sbjct: 219 AGYMHVGRSREALMLFDEMLSAGTTVGEATLVSVLTACAQIGTLDRGKWVHWYVRSRGMQ 278

Query: 349 VDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKM 408
           +   LGT L+ MYSKCG++ +A+ VF +++++ V  WT+ + GL M+GM T+ L LF +M
Sbjct: 279 MSIKLGTALVDMYSKCGAVVTAMEVFESMAERNVYTWTSAVSGLAMNGMGTECLQLFKRM 338

Query: 409 CRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGY 468
              G++P  ++F+ VL  CS AGLV++GR  F+ M + YG++P  EHYGC+VD+  R G 
Sbjct: 339 EGAGIQPNGVSFVAVLRGCSMAGLVDEGRACFDSM-DKYGVDPWPEHYGCMVDLYGRAGR 397

Query: 469 LEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNI 528
           L++A S I  MPM P+  +W +LL+ +R H + D+G+YA + L+ +  +    +V LSNI
Sbjct: 398 LDDAISFINDMPMEPHEGVWGALLNASRIHNSVDLGKYALDKLLAIESENDAAHVQLSNI 457

Query: 529 YAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEM 588
           YA +  W  VS VR MMK +G +K PG S+IE  G +HEF VG + HP+ +EI   L+EM
Sbjct: 458 YAESQNWKGVSRVRGMMKAKGVKKVPGWSTIEVDGKVHEFYVGGRLHPRYNEIELMLAEM 517

Query: 589 RNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRV 648
             +L+  G+  +T +VL  IE++ EKE  +  HSE+LA+AFGLI +     IRIVKNLRV
Sbjct: 518 DRRLRLQGYTANTREVLFDIEEE-EKEGAISLHSEKLALAFGLIVLPEDVEIRIVKNLRV 576

Query: 649 CNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           C DCH   KL+S ++NREI++RD +RFHHFK G CSC+D+W
Sbjct: 577 CMDCHRYIKLVSKVFNREIVMRDRNRFHHFKGGECSCRDYW 617



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 101/414 (24%), Positives = 173/414 (41%), Gaps = 65/414 (15%)

Query: 38  QQLHA-LSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVL-YNLLIK 95
           + LHA L V   L   S +++ L SL      N+L YAR +     Q P+ +L +N  I+
Sbjct: 23  RALHAHLVVSGRLASPSHLAAFLASLASS---NHLSYARLVLP---QRPATLLAHNAFIR 76

Query: 96  CYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKG--------------AARLGAIKEG 141
                 R   A   F DL    L PD+++L  +++               +A + A  + 
Sbjct: 77  ALARGPRPCLAFAAFRDLP---LPPDHYSLNFLVRAATALVASAAEEKHVSAEVNARLQA 133

Query: 142 KQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKK 201
              HG   + G   D  V S ++SMYA  G++   R  F  +   D+V    ++      
Sbjct: 134 VSAHGAAVRWGHAADPHVQSGVLSMYAALGDVASSRAAFAEIACPDVVCVTAMVAALAAG 193

Query: 202 GEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM-------PNRNLVS-- 252
           G+V+ A  LFD MP RD  +W+ ++ G+   G+   A  +F  M           LVS  
Sbjct: 194 GDVDAARDLFDGMPQRDHVAWSAMIAGYMHVGRSREALMLFDEMLSAGTTVGEATLVSVL 253

Query: 253 -------------W-----------------NAMINGYMKAGDVDSACELFDDMEIRDLI 282
                        W                  A+++ Y K G V +A E+F+ M  R++ 
Sbjct: 254 TACAQIGTLDRGKWVHWYVRSRGMQMSIKLGTALVDMYSKCGAVVTAMEVFESMAERNVY 313

Query: 283 TWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYI 342
           TW S ++G  +NG   E L+L + M    + PN  + V+ L   +   ++++GR     +
Sbjct: 314 TWTSAVSGLAMNGMGTECLQLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVDEGRACFDSM 373

Query: 343 VKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS-KKKVGHWTAMIVGLGMH 395
            K G          ++ +Y + G ++ A++    +  +   G W A++    +H
Sbjct: 374 DKYGVDPWPEHYGCMVDLYGRAGRLDDAISFINDMPMEPHEGVWGALLNASRIH 427


>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/571 (38%), Positives = 341/571 (59%), Gaps = 15/571 (2%)

Query: 127 CVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK 186
           CV++ A     I+ GKQ+H  + ++G  F+  + + LV++Y     +     +FD +  +
Sbjct: 11  CVVRKA-----IEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRISKR 65

Query: 187 DLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREIF 242
           +L  WN +I GY   G  E+A+ L+ +M D     D F++  ++   S    +E  ++I 
Sbjct: 66  NLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKKIH 125

Query: 243 YRMPNRNLVS----WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFM 298
             +    L S      A+I+ Y K G V+SA ++FD ++ RD++ WNSM+A Y  NG+  
Sbjct: 126 KDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQPD 185

Query: 299 EALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLI 358
           E+L L   M    + P + T V +++A A   +L +G+ +H Y  ++GF  +  + T L+
Sbjct: 186 ESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDKVKTALM 245

Query: 359 QMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI 418
            MY+K GS+  A ++F  + +K+V  W AMI G  MHG A +ALDLF +M +  + P  I
Sbjct: 246 DMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEM-KGKVLPDHI 304

Query: 419 TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIES 478
           TF+GVL ACSH GL+N+G+ +F  MI+D+ I PT++HY C++D+L   G LEEA   I  
Sbjct: 305 TFVGVLAACSHGGLLNEGKMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKLIME 364

Query: 479 MPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKV 538
           M + P+  +W +LL   + HGN ++GE A   L+++ PD  G YV+LSN+YA AG+WD V
Sbjct: 365 MRVEPDAGVWGALLHSCKIHGNVEMGELALEKLVELEPDDGGNYVILSNMYAQAGKWDGV 424

Query: 539 SEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHV 598
           + +R++M  +G +K    S IE    +H F+  D SHP+++ I+++L      +K AG+ 
Sbjct: 425 ARLRDLMMNKGLKKSIACSWIEVGNKVHAFLSEDTSHPKSEAIYAELKRTGKLMKEAGYA 484

Query: 599 PDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKL 658
           P    V   +ED  EK   +  HSERLAIAFGLI+  + + + I+KNLR+C DCH   K 
Sbjct: 485 PQVGSVFHDVEDD-EKVDMVSCHSERLAIAFGLISTSAGTKLLIIKNLRICEDCHVAIKF 543

Query: 659 LSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           +S I  REI +RD +R+HHFK+G CSC DFW
Sbjct: 544 ISKITEREITIRDVNRYHHFKDGVCSCGDFW 574



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 113/401 (28%), Positives = 193/401 (48%), Gaps = 78/401 (19%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +QLHA   +  + ++  ++++L++LY     N+L  A  +FDRI +  +L L+N++I+ Y
Sbjct: 21  KQLHARICQVGISFNPLLATKLVNLYCI--CNSLTNAHLLFDRISKR-NLFLWNVMIRGY 77

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
            +N     A++L+  + D  L+PD FT P V+K  + L A++EGK+IH  V + G   D 
Sbjct: 78  AWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKKIHKDVIRSGLESDV 137

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
           FV ++L+ MYAK G ++  R+VFD +D++D+V WN ++  Y + G+ + ++ L   M   
Sbjct: 138 FVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQPDESLALCRVMAFN 197

Query: 218 DL----------------------------FSW-----------TCLVDGFSKCGKVEIA 238
            L                            +SW           T L+D ++K G V +A
Sbjct: 198 GLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDKVKTALMDMYAKSGSVNVA 257

Query: 239 REIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFM 298
           R +F  +  + +VSWNAMI GY   G  + A +LF +M+                     
Sbjct: 258 RSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEMK--------------------- 296

Query: 299 EALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLG--TL 356
                      G VLP+  T V  L+A +   +LN+G+ MH   + + F +   +   T 
Sbjct: 297 -----------GKVLPDHITFVGVLAACSHGGLLNEGK-MHFRSMISDFNIWPTVQHYTC 344

Query: 357 LIQMYSKCGSIESALTVFRAIS-KKKVGHWTAMIVGLGMHG 396
           +I +   CG +E A  +   +  +   G W A++    +HG
Sbjct: 345 MIDLLGHCGRLEEAYKLIMEMRVEPDAGVWGALLHSCKIHG 385



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 151/311 (48%), Gaps = 21/311 (6%)

Query: 32  STHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYN 91
           S  +E +++H   +++ L     + + L+ +Y       +  AR +FD+I +   +V +N
Sbjct: 116 SAMEEGKKIHKDVIRSGLESDVFVGAALIDMYAK--CGCVESARQVFDKIDER-DVVCWN 172

Query: 92  LLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKL 151
            ++  Y  N +  E+L L   +    L P   T    I  +A  G + +GK++HG  ++ 
Sbjct: 173 SMLATYSQNGQPDESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRH 232

Query: 152 GFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLF 211
           GF  +  V ++L+ MYAK G +++ R +F+ +++K +VSWN +I GY   G    A+ LF
Sbjct: 233 GFESNDKVKTALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLF 292

Query: 212 DEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS----------WNAMINGYM 261
            EM  + L      V   + C    +  E   +M  R+++S          +  MI+   
Sbjct: 293 KEMKGKVLPDHITFVGVLAACSHGGLLNE--GKMHFRSMISDFNIWPTVQHYTCMIDLLG 350

Query: 262 KAGDVDSACELFDDMEIR-DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDA--- 317
             G ++ A +L  +M +  D   W +++   +++G  +E  EL    L+ ++ P+D    
Sbjct: 351 HCGRLEEAYKLIMEMRVEPDAGVWGALLHSCKIHGN-VEMGELALEKLV-ELEPDDGGNY 408

Query: 318 TLVSALSAVAG 328
            ++S + A AG
Sbjct: 409 VILSNMYAQAG 419


>gi|224117814|ref|XP_002331638.1| predicted protein [Populus trichocarpa]
 gi|222874034|gb|EEF11165.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 216/464 (46%), Positives = 302/464 (65%), Gaps = 9/464 (1%)

Query: 229 FSKC--GKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNS 286
           +SKC  G + +A ++F  MP+++ V+ + MI  Y      +SA ++F+ M  +D++ WNS
Sbjct: 23  YSKCVVGDLNLACKLFDEMPHKDTVTLDTMITAYF-----ESAYKVFELMPEKDIVAWNS 77

Query: 287 MIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNG 346
           +I G+ LNG+  EAL L + M    V P+  T+VS LSA A LA L  GR  H Y+VK G
Sbjct: 78  VINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLLSACAELATLVLGRRAHVYMVKVG 137

Query: 347 FVVDGVLGTLLIQMYSKCGSIESALTVFRAIS-KKKVGHWTAMIVGLGMHGMATQALDLF 405
              +      L+ +Y+KCG+I  A  +F  +  ++ V  WT++IVGL ++G   +AL+ F
Sbjct: 138 LNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVVSWTSLIVGLAVNGFGKEALEHF 197

Query: 406 NKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCR 465
             M R G+ P+ ITF+GVL ACSH G+VN+G  YF  M   Y I P IEHYGC+VD+L R
Sbjct: 198 KDMEREGLVPSEITFVGVLYACSHCGIVNEGFEYFKRMKEQYDIVPRIEHYGCMVDLLGR 257

Query: 466 TGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVL 525
            G L+EA   I+ MP++PN VIW +LL     HG+  +G +A   L+++ P   G YV+L
Sbjct: 258 AGLLKEAYDYIQDMPLQPNAVIWRTLLGACTIHGHLGLGAFARARLLQLEPKDSGDYVLL 317

Query: 526 SNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKL 585
           SN+YA+  +W  V EVR  M   G RK PG S +E    +HEFV+GD++HPQ++ I+  L
Sbjct: 318 SNLYASEQRWSDVHEVRRTMLSEGVRKTPGYSLVELGNHVHEFVMGDRTHPQSEAIYKML 377

Query: 586 SEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKN 645
            EM  KLK AG+VP T  VL  IE++ EKE+ L  HSE++AIAF LIN    +PIRI+KN
Sbjct: 378 VEMAMKLKLAGYVPHTANVLADIEEE-EKESALFYHSEKIAIAFMLINTLPGTPIRIIKN 436

Query: 646 LRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           LRVC DCH   KL+S ++ R+I+VRD SRFHHF++GSCSC+D+W
Sbjct: 437 LRVCADCHFAIKLISKVFERDIVVRDCSRFHHFRDGSCSCRDYW 480



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/352 (22%), Positives = 154/352 (43%), Gaps = 44/352 (12%)

Query: 41  HALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDR-------------------- 80
           H  +VK  +  H  +++ +LS Y    + +L+ A  +FD                     
Sbjct: 1   HCQAVKPGIFSHGYVANNILSRYSKCVVGDLNLACKLFDEMPHKDTVTLDTMITAYFESA 60

Query: 81  -----ILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARL 135
                ++    +V +N +I  +  N + +EALTL+  +    + PD FT+  ++   A L
Sbjct: 61  YKVFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLLSACAEL 120

Query: 136 GAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD-DKDLVSWNCL 194
             +  G++ H  + K+G   +    ++L+ +YAK G I   R++FD M  ++++VSW  L
Sbjct: 121 ATLVLGRRAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVVSWTSL 180

Query: 195 IDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNR-- 248
           I G    G  + A++ F +M    L     ++  ++   S CG V    E F RM  +  
Sbjct: 181 IVGLAVNGFGKEALEHFKDMEREGLVPSEITFVGVLYACSHCGIVNEGFEYFKRMKEQYD 240

Query: 249 ---NLVSWNAMINGYMKAGDVDSACELFDDMEIR-DLITWNSMIAGYELNGRF-MEALEL 303
               +  +  M++   +AG +  A +   DM ++ + + W +++    ++G   + A   
Sbjct: 241 IVPRIEHYGCMVDLLGRAGLLKEAYDYIQDMPLQPNAVIWRTLLGACTIHGHLGLGAFAR 300

Query: 304 LETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGT 355
              + +      D  L+S L A       ++ RW   + V+   + +GV  T
Sbjct: 301 ARLLQLEPKDSGDYVLLSNLYA-------SEQRWSDVHEVRRTMLSEGVRKT 345


>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
 gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
          Length = 601

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 225/581 (38%), Positives = 336/581 (57%), Gaps = 14/581 (2%)

Query: 122 NFTLPC-VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLV---SMYAKFGEIDLGR 177
           N T P  ++    +  ++KE KQI     K     D  +L+ L+   +       +D   
Sbjct: 22  NTTYPSSLLSCLPKCTSLKELKQIQAFSIKTHLQNDLQILTKLINSCTQNPTTASMDYAH 81

Query: 178 RVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLF------DEMPDRDLFSW---TCLVDG 228
           ++F+A+   D+V +N +  GY +      A+ LF      + +PD   F      C+V  
Sbjct: 82  QLFEAIPQPDIVLFNSMFRGYSRSNAPLKAISLFIKALNYNLLPDDYTFPSLLKACVVAK 141

Query: 229 FSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMI 288
             + GK      I   + N N      +IN Y    DVD A  +FD++    ++++N++I
Sbjct: 142 AFQQGKQLHCLAIKLGL-NENPYVCPTLINMYAGCNDVDGAQRVFDEILEPCVVSYNAII 200

Query: 289 AGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFV 348
            GY  + R  EAL L   +    + PND T++S LS+ A L  L+ G+W+H Y+ KNG  
Sbjct: 201 TGYARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSSCALLGALDLGKWIHEYVKKNGLD 260

Query: 349 VDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKM 408
               + T LI MY+KCGS++ A++VF ++S +    W+AMIV   MHG     + +F +M
Sbjct: 261 KYVKVNTALIDMYAKCGSLDGAISVFESMSVRDTQAWSAMIVAYAMHGQGQDVMSMFEEM 320

Query: 409 CRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGY 468
            R  ++P  ITF+G+L ACSH GLV++G RYF  M   YGI P I+HYGC+VD+L R G 
Sbjct: 321 ARAKVQPDEITFLGLLYACSHTGLVDEGFRYFYSMSEVYGIIPGIKHYGCMVDLLGRAGL 380

Query: 469 LEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNI 528
           L EA   I+ +P++P  ++W +LLS   +HGN ++ +   N ++++     G YV+LSN+
Sbjct: 381 LHEAYKFIDELPIKPTPILWRTLLSSCSSHGNLELAKQVMNQILELDDSHGGDYVILSNL 440

Query: 529 YAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEM 588
            A AG+W+ V  +R++M  +G  K PG SSIE   V+HEF  GD  H  +  +H  L E+
Sbjct: 441 CARAGKWEDVDTLRKLMIHKGAVKIPGCSSIEVDNVVHEFFSGDGVHYVSTALHRALDEL 500

Query: 589 RNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRV 648
             +LK+ G+VPDT+ V+    + +EKE  L  HSE+LAI+FGL+N    + IR+VKNLRV
Sbjct: 501 VKELKSVGYVPDTSLVVHPDMEDEEKEITLRYHSEKLAISFGLLNTPPGTTIRVVKNLRV 560

Query: 649 CNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           C DCHS  KL+S + +REII+RD  RFHHFK+G CSC D+W
Sbjct: 561 CGDCHSAAKLISSLIDREIILRDVQRFHHFKDGKCSCGDYW 601



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 120/454 (26%), Positives = 220/454 (48%), Gaps = 49/454 (10%)

Query: 1   MQTQTLQHSSPIHALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLL 60
           +Q    QHSS         PS L   + K +S  KE +Q+ A S+KT+L     I ++L+
Sbjct: 10  IQQSPSQHSS---YYNTTYPSSLLSCLPKCTSL-KELKQIQAFSIKTHLQNDLQILTKLI 65

Query: 61  -SLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLL 119
            S   +P   ++ YA  +F+ I Q P +VL+N + + Y  +    +A++LF   L+  LL
Sbjct: 66  NSCTQNPTTASMDYAHQLFEAIPQ-PDIVLFNSMFRGYSRSNAPLKAISLFIKALNYNLL 124

Query: 120 PDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRV 179
           PD++T P ++K      A ++GKQ+H L  KLG   + +V  +L++MYA   ++D  +RV
Sbjct: 125 PDDYTFPSLLKACVVAKAFQQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQRV 184

Query: 180 FDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL-FSWTCLVDGFSKC---GKV 235
           FD + +  +VS+N +I GY +      A+ LF ++  R L  +   ++   S C   G +
Sbjct: 185 FDEILEPCVVSYNAIITGYARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSSCALLGAL 244

Query: 236 EIAREIFYRMPNRNLVSW----NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGY 291
           ++ + I   +    L  +     A+I+ Y K G +D A  +F+ M +RD   W++MI  Y
Sbjct: 245 DLGKWIHEYVKKNGLDKYVKVNTALIDMYAKCGSLDGAISVFESMSVRDTQAWSAMIVAY 304

Query: 292 ELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKG-RWMHSYIVKNGFVVD 350
            ++G+  + + + E M    V P++ T +  L A +   ++++G R+ +S     G +  
Sbjct: 305 AMHGQGQDVMSMFEEMARAKVQPDEITFLGLLYACSHTGLVDEGFRYFYSMSEVYGII-- 362

Query: 351 GVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCR 410
                                          + H+  M+  LG  G+  +A    ++   
Sbjct: 363 -----------------------------PGIKHYGCMVDLLGRAGLLHEAYKFIDE--- 390

Query: 411 MGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMI 444
           + +KPT I +  +L++CS  G +   ++  N ++
Sbjct: 391 LPIKPTPILWRTLLSSCSSHGNLELAKQVMNQIL 424


>gi|242094040|ref|XP_002437510.1| hypothetical protein SORBIDRAFT_10g028370 [Sorghum bicolor]
 gi|241915733|gb|EER88877.1| hypothetical protein SORBIDRAFT_10g028370 [Sorghum bicolor]
          Length = 653

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 205/476 (43%), Positives = 305/476 (64%), Gaps = 3/476 (0%)

Query: 216 DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDD 275
           D+  F    L+  +  CG V  AR++   M  ++++SW +++  Y ++ D+ SA E+F  
Sbjct: 179 DKHRFVENSLIGAYVACGDVGAARKVLDEMVVKDVISWTSIVAAYSRSRDMGSAEEVFAL 238

Query: 276 MEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKG 335
             ++D++ W +M+ GY  N   ++ALE  E M    +  ++ +L  A+SA A L  + + 
Sbjct: 239 CPVKDMVAWTAMVTGYAQNAMPVKALEAFEQMAGAGMPIDEVSLTGAISACAQLGAVRRA 298

Query: 336 RWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMH 395
            W+     ++G   + V+G+ L+ MY+KCG I+ A  VF  + +K V  +++MIVGL  H
Sbjct: 299 VWIQEIADRSGLGRNVVVGSGLVDMYAKCGLIDEACRVFEGMQEKNVYTYSSMIVGLASH 358

Query: 396 GMATQALDLFNKMCRMG-MKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIE 454
           G A  A+ LFN M R   ++P  +TFIGVL ACSHAG+V +GR YF  M + YGI P+ +
Sbjct: 359 GRANDAIALFNDMVRRADVEPNHVTFIGVLTACSHAGMVKEGRYYFAQMKDRYGILPSAD 418

Query: 455 HYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKV 514
           HY C+VD+L R G + EA   ++SM + P+  +W +LL   R HGN  + + AA +L K+
Sbjct: 419 HYTCMVDLLGRAGLVIEALDLVKSMTVEPHGGVWGALLGACRIHGNTKVAKVAAQHLFKL 478

Query: 515 APDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHR-GVLHEFVVGDK 573
            P+ IG YV+LSN  A+AG+WD+VS+VR++M+ RG +KDP  SS E R G++H+F  GD 
Sbjct: 479 EPEGIGNYVLLSNTLASAGEWDEVSKVRKLMRIRGLKKDPAVSSFEGRDGLVHQFFAGDN 538

Query: 574 SHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLIN 633
           +HP   EI   L E+R +LK AG+VP  + V+  + D+ EKE  L  HSE+LA++FGL+ 
Sbjct: 539 THPWMHEIKKTLLELRARLKLAGYVPVLSSVVYNVSDE-EKERLLMGHSEKLALSFGLLT 597

Query: 634 VKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           ++SRS IRIVKNLR+C DCH   +L+S +   EIIVRDN RFHHF++G CSC  FW
Sbjct: 598 LESRSSIRIVKNLRICEDCHLFIRLVSKVEPIEIIVRDNMRFHHFRDGECSCGGFW 653



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 113/458 (24%), Positives = 189/458 (41%), Gaps = 88/458 (19%)

Query: 73  YARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL-----DRFLLPDNFTLPC 127
           YA ++F   L  P   L   L++     Q   E   +F  L      D   LP  F    
Sbjct: 95  YAVAVFSS-LSPPDPFLAAALLRFAHLTQPPLETFRVFSGLRRAHGRDLPFLP--FAFSP 151

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDK--FVLSSLVSMYAKFGEIDLGRRVFDAMDD 185
           + K AA   ++      H +   LG GFDK  FV +SL+  Y   G++   R+V D M  
Sbjct: 152 LAKSAAAARSLPAAAGAHAVSLLLG-GFDKHRFVENSLIGAYVACGDVGAARKVLDEMVV 210

Query: 186 KDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM 245
           KD++SW  ++  Y +  ++  A ++F   P +D+ +WT +V G+++      A E F +M
Sbjct: 211 KDVISWTSIVAAYSRSRDMGSAEEVFALCPVKDMVAWTAMVTGYAQNAMPVKALEAFEQM 270

Query: 246 P---------------------------------------NRNLVSWNAMINGYMKAGDV 266
                                                    RN+V  + +++ Y K G +
Sbjct: 271 AGAGMPIDEVSLTGAISACAQLGAVRRAVWIQEIADRSGLGRNVVVGSGLVDMYAKCGLI 330

Query: 267 DSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETML-IGDVLPNDATLVSALSA 325
           D AC +F+ M+ +++ T++SMI G   +GR  +A+ L   M+   DV PN  T +  L+A
Sbjct: 331 DEACRVFEGMQEKNVYTYSSMIVGLASHGRANDAIALFNDMVRRADVEPNHVTFIGVLTA 390

Query: 326 VAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHW 385
            +   ++ +GR+  +                  QM  + G + SA             H+
Sbjct: 391 CSHAGMVKEGRYYFA------------------QMKDRYGILPSA------------DHY 420

Query: 386 TAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN 445
           T M+  LG  G+  +ALDL   M    ++P    +  +L AC   G     +     +  
Sbjct: 421 TCMVDLLGRAGLVIEALDLVKSMT---VEPHGGVWGALLGACRIHGNTKVAKVAAQHL-- 475

Query: 446 DYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESMPMR 482
            + +EP  I +Y  L + L   G  +E     + M +R
Sbjct: 476 -FKLEPEGIGNYVLLSNTLASAGEWDEVSKVRKLMRIR 512


>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
 gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
          Length = 621

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 225/573 (39%), Positives = 323/573 (56%), Gaps = 53/573 (9%)

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM- 214
           D FV+  L+ + +    I    ++F    + ++  +  LIDG V        + L+ +M 
Sbjct: 63  DPFVVFELLRVCSNLNSIGYASKIFSHTQNPNVYLYTALIDGLVLSCYYTDGIHLYYQMI 122

Query: 215 -----PD--------------------RDLFSWTC-------------LVDGFSKCGKVE 236
                PD                    R++ S                L++ + KCG  E
Sbjct: 123 NSSLVPDSYAVTSVLKACGCHLALKEGREVHSQVLKLGLSSNRSIRIKLIELYGKCGAFE 182

Query: 237 IAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGR 296
            AR +F  MP R++V+   MIN Y   G             I+D + W +MI G   NG 
Sbjct: 183 DARRVFDEMPERDVVASTVMINYYFDHG-------------IKDTVCWTAMIDGLVRNGE 229

Query: 297 FMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTL 356
              ALE+   M   DV+PN+ T+V  LSA + L  L  GRW+ SY+ K+   ++  +G  
Sbjct: 230 SNRALEVFRNMQREDVMPNEVTIVCVLSACSELGALQLGRWVRSYMDKHRIELNHFVGGA 289

Query: 357 LIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT 416
           LI MYS+CG I+ A  VF  + +K V  + +MI+G  +HG + +A++LF  + + G  P+
Sbjct: 290 LINMYSRCGDIDEAQRVFEQMKEKNVITYNSMIMGFALHGKSVEAVELFRGLIKQGFTPS 349

Query: 417 AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTI 476
           ++TF+GVLNACSH GL   G   F+ M  DYGIEP IEHYGC+VD+L R G LEEA S I
Sbjct: 350 SVTFVGVLNACSHGGLAELGFEIFHSMAKDYGIEPQIEHYGCMVDLLGRLGRLEEAYSFI 409

Query: 477 ESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWD 536
             M + P+ V+  +LLS  + HGN ++ E  A +L+       G Y++LSN Y+++G+W 
Sbjct: 410 RMMKVAPDHVMLGALLSACKIHGNLELAERVAKSLVACKNADSGTYILLSNAYSSSGKWK 469

Query: 537 KVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAG 596
           + +EVR  M++ G  K+PG SSIE    +HEF++GD  HPQ ++I+ KL E+   L+  G
Sbjct: 470 EAAEVRTNMREEGIEKEPGCSSIEVNNEIHEFLLGDLRHPQKEKIYKKLEELNQILRLEG 529

Query: 597 HVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVT 656
           + P T  VL  IE + EKE  L  HSERLAI +GLI+ K  + +R+VKNLRVCNDCH   
Sbjct: 530 YTPATEVVLHDIE-KSEKEWALAIHSERLAICYGLISTKPLTTLRVVKNLRVCNDCHLTI 588

Query: 657 KLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           KL+S I  R+I+VRD +RFHHF+NG CSC D+W
Sbjct: 589 KLISNITRRKIVVRDRNRFHHFENGVCSCGDYW 621



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 90/300 (30%), Positives = 161/300 (53%), Gaps = 31/300 (10%)

Query: 62  LYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPD 121
           L V  ++N++ YA  IF    Q+P++ LY  LI   V +    + + L+  +++  L+PD
Sbjct: 71  LRVCSNLNSIGYASKIFSHT-QNPNVYLYTALIDGLVLSCYYTDGIHLYYQMINSSLVPD 129

Query: 122 NFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFD 181
           ++ +  V+K      A+KEG+++H  V KLG   ++ +   L+ +Y K G  +  RRVFD
Sbjct: 130 SYAVTSVLKACGCHLALKEGREVHSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFD 189

Query: 182 AMDDKDLVS------------------WNCLIDGYVKKGEVEVAMKLFDEMPDRDLF--- 220
            M ++D+V+                  W  +IDG V+ GE   A+++F  M   D+    
Sbjct: 190 EMPERDVVASTVMINYYFDHGIKDTVCWTAMIDGLVRNGESNRALEVFRNMQREDVMPNE 249

Query: 221 -SWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWN-----AMINGYMKAGDVDSACELFD 274
            +  C++   S+ G +++ R +   M +++ +  N     A+IN Y + GD+D A  +F+
Sbjct: 250 VTIVCVLSACSELGALQLGRWVRSYM-DKHRIELNHFVGGALINMYSRCGDIDEAQRVFE 308

Query: 275 DMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVA--GLAVL 332
            M+ +++IT+NSMI G+ L+G+ +EA+EL   ++     P+  T V  L+A +  GLA L
Sbjct: 309 QMKEKNVITYNSMIMGFALHGKSVEAVELFRGLIKQGFTPSSVTFVGVLNACSHGGLAEL 368



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 84/379 (22%), Positives = 172/379 (45%), Gaps = 56/379 (14%)

Query: 26  NILKFSSTH---KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRIL 82
           ++LK    H   KE +++H+  +K  L  +  I  +L+ LY          AR +FD + 
Sbjct: 135 SVLKACGCHLALKEGREVHSQVLKLGLSSNRSIRIKLIELY--GKCGAFEDARRVFDEMP 192

Query: 83  QH-----------------PSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTL 125
           +                     V +  +I   V N  S+ AL +F ++    ++P+  T+
Sbjct: 193 ERDVVASTVMINYYFDHGIKDTVCWTAMIDGLVRNGESNRALEVFRNMQREDVMPNEVTI 252

Query: 126 PCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD 185
            CV+   + LGA++ G+ +   + K     + FV  +L++MY++ G+ID  +RVF+ M +
Sbjct: 253 VCVLSACSELGALQLGRWVRSYMDKHRIELNHFVGGALINMYSRCGDIDEAQRVFEQMKE 312

Query: 186 KDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREI 241
           K+++++N +I G+   G+   A++LF  +  +       ++  +++  S  G  E+  EI
Sbjct: 313 KNVITYNSMIMGFALHGKSVEAVELFRGLIKQGFTPSSVTFVGVLNACSHGGLAELGFEI 372

Query: 242 FYRMP-----NRNLVSWNAMINGYMKAGDVDSACELFDDMEIR-DLITWNSMIAGYELNG 295
           F+ M         +  +  M++   + G ++ A      M++  D +   ++++  +++G
Sbjct: 373 FHSMAKDYGIEPQIEHYGCMVDLLGRLGRLEEAYSFIRMMKVAPDHVMLGALLSACKIHG 432

Query: 296 RFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVL------NKGRWMHSYIVKNGFVV 349
                LEL E +          +LV+  +A +G  +L      + G+W  +  V+     
Sbjct: 433 N----LELAERVA--------KSLVACKNADSGTYILLSNAYSSSGKWKEAAEVRTNMRE 480

Query: 350 DGVLGTLLIQMYSKCGSIE 368
           +G      I+    C SIE
Sbjct: 481 EG------IEKEPGCSSIE 493



 Score = 45.4 bits (106), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 74/165 (44%), Gaps = 2/165 (1%)

Query: 338 MHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGM 397
           +++ I++N    D  +   L+++ S   SI  A  +F       V  +TA+I GL +   
Sbjct: 51  IYAKIIRNHHHQDPFVVFELLRVCSNLNSIGYASKIFSHTQNPNVYLYTALIDGLVLSCY 110

Query: 398 ATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYG 457
            T  + L+ +M    + P +     VL AC     + +GR   + ++   G+        
Sbjct: 111 YTDGIHLYYQMINSSLVPDSYAVTSVLKACGCHLALKEGREVHSQVLK-LGLSSNRSIRI 169

Query: 458 CLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKD 502
            L+++  + G  E+A+   + MP R + V    +++   +HG KD
Sbjct: 170 KLIELYGKCGAFEDARRVFDEMPER-DVVASTVMINYYFDHGIKD 213


>gi|326520445|dbj|BAK07481.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 596

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 218/515 (42%), Positives = 313/515 (60%), Gaps = 9/515 (1%)

Query: 183 MDDKDLVSWNCLIDGYVKKGEVEVAMKLFDE-MPDRDLFSWTCLVDGFSKCGKVEIAREI 241
           + D D  S N ++          +A+ L    +   D  ++  L+   ++   +     +
Sbjct: 83  LPDPDPFSLNTVLRIAASSAHPRIALALHRRRLAPPDTHTYPPLLQACTRLLALREGESL 142

Query: 242 FYRMPNRNLVSW----NAMINGYMKAGDVDSACELFDDMEI--RDLITWNSMIAGYELNG 295
                   LV+     N++++ Y   G  +SA  +FD++ +  R+L++WNS++ G+  NG
Sbjct: 143 HAEAAKNGLVALVFVKNSLVHHYGACGLFESAHRVFDEIPVLERNLVSWNSVMNGFAANG 202

Query: 296 RFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGT 355
           R  E L +    L  D++P+  T+VS L+A A +  L  GR +H +  K G V +  +G 
Sbjct: 203 RPNEVLTIFRETLEADLMPDGFTIVSVLTACAEIGALTLGRRVHVFASKVGLVGNSHVGN 262

Query: 356 LLIQMYSKCGSIESALTVFRAIS-KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMK 414
            LI +Y+KCG +E A  VF  +   + V  WT++IVGL  +G    AL+LF  M R  + 
Sbjct: 263 ALIDLYAKCGGVEDAWKVFEEMGVARTVVSWTSLIVGLAGNGFGKDALELFGLMERERLI 322

Query: 415 PTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKS 474
           PT IT +GVL ACSH GLV+DG RYFN M + YGI P IEH GC+VD+L R G +EEA +
Sbjct: 323 PTDITMVGVLYACSHCGLVDDGFRYFNEMQDKYGIAPGIEHLGCMVDLLGRAGRVEEAHN 382

Query: 475 TIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQ 534
            I +MP+ PN V+W +LL     H   ++GE A   L+++ P   G YV+LSN+YAA G+
Sbjct: 383 YITTMPVEPNAVVWRTLLGACAMHKKLELGEAAWARLVELDPGHSGDYVLLSNLYAAVGR 442

Query: 535 WDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKA 594
           W     +R+ M   G RK+PG S +E R  ++EFV+GD+SHP++D+I+  L+E+  +L+ 
Sbjct: 443 WADAHVLRKTMATHGVRKNPGHSLVELRNSVYEFVMGDRSHPESDQIYQTLAEIAERLRC 502

Query: 595 AGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHS 654
            G+VP T+ VL  IE++ EKE  L  HSERLAIAF L+     SPIRIVKNLR+C DCH 
Sbjct: 503 QGYVPRTSNVLADIEEE-EKETALNYHSERLAIAFALLKSLPGSPIRIVKNLRMCGDCHL 561

Query: 655 VTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           V KL+S +Y+REIIVRD SRFHHFK G CSCKD+W
Sbjct: 562 VIKLISKVYDREIIVRDRSRFHHFKGGECSCKDYW 596



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 111/431 (25%), Positives = 186/431 (43%), Gaps = 65/431 (15%)

Query: 15  LQQHLPSRLHWNILKFSSTHKETQQLHALSVKTN--LIYHSGISSRLL----SLYVDPHI 68
           L+ HLPS           +    +Q+HA +++     + H  ++  LL    SL   P  
Sbjct: 22  LRLHLPS----------PSVAAAKQIHARALRAAGVPLSHPLLAKHLLFHLASLRAGP-- 69

Query: 69  NNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCV 128
             L YA ++   +L  P     N +++    +     AL L      R   PD  T P +
Sbjct: 70  PPLLYAVTVLSCLLPDPDPFSLNTVLRIAASSAHPRIALALH---RRRLAPPDTHTYPPL 126

Query: 129 IKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD--DK 186
           ++   RL A++EG+ +H    K G     FV +SLV  Y   G  +   RVFD +   ++
Sbjct: 127 LQACTRLLALREGESLHAEAAKNGLVALVFVKNSLVHHYGACGLFESAHRVFDEIPVLER 186

Query: 187 DLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIF 242
           +LVSWN +++G+   G     + +F E  + DL    F+   ++   ++ G + + R + 
Sbjct: 187 NLVSWNSVMNGFAANGRPNEVLTIFRETLEADLMPDGFTIVSVLTACAEIGALTLGRRVH 246

Query: 243 YRMPNRNLVS----WNAMINGYMKAGDVDSACELFDDMEI-RDLITWNSMIAGYELNGRF 297
                  LV      NA+I+ Y K G V+ A ++F++M + R +++W S+I G   NG  
Sbjct: 247 VFASKVGLVGNSHVGNALIDLYAKCGGVEDAWKVFEEMGVARTVVSWTSLIVGLAGNGFG 306

Query: 298 MEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLL 357
            +ALEL   M    ++P D T+V  L A +           H  +V +GF          
Sbjct: 307 KDALELFGLMERERLIPTDITMVGVLYACS-----------HCGLVDDGF-------RYF 348

Query: 358 IQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA 417
            +M  K G                + H   M+  LG  G   +A    N +  M ++P A
Sbjct: 349 NEMQDKYG------------IAPGIEHLGCMVDLLGRAGRVEEA---HNYITTMPVEPNA 393

Query: 418 ITFIGVLNACS 428
           + +  +L AC+
Sbjct: 394 VVWRTLLGACA 404



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 154/335 (45%), Gaps = 30/335 (8%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRI-LQHPSLVLYNLL 93
           +E + LHA + K  L+    + + L+  Y          A  +FD I +   +LV +N +
Sbjct: 137 REGESLHAEAAKNGLVALVFVKNSLVHHYGA--CGLFESAHRVFDEIPVLERNLVSWNSV 194

Query: 94  IKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGF 153
           +  +  N R +E LT+F + L+  L+PD FT+  V+   A +GA+  G+++H    K+G 
Sbjct: 195 MNGFAANGRPNEVLTIFRETLEADLMPDGFTIVSVLTACAEIGALTLGRRVHVFASKVGL 254

Query: 154 GFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD-DKDLVSWNCLIDGYVKKGEVEVAMKLFD 212
             +  V ++L+ +YAK G ++   +VF+ M   + +VSW  LI G    G  + A++LF 
Sbjct: 255 VGNSHVGNALIDLYAKCGGVEDAWKVFEEMGVARTVVSWTSLIVGLAGNGFGKDALELFG 314

Query: 213 EMPDRDLFSWTCLVDGF----SKCGKVEIAREIFYRMPNRNLVS-----WNAMINGYMKA 263
            M    L      + G     S CG V+     F  M ++  ++        M++   +A
Sbjct: 315 LMERERLIPTDITMVGVLYACSHCGLVDDGFRYFNEMQDKYGIAPGIEHLGCMVDLLGRA 374

Query: 264 GDVDSACELFDDMEIR-DLITWNSMIAGYELNGRFMEALELLETML--IGDVLP---NDA 317
           G V+ A      M +  + + W +++    ++ +    LEL E     + ++ P    D 
Sbjct: 375 GRVEEAHNYITTMPVEPNAVVWRTLLGACAMHKK----LELGEAAWARLVELDPGHSGDY 430

Query: 318 TLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV 352
            L+S L A         GRW  +++++      GV
Sbjct: 431 VLLSNLYAAV-------GRWADAHVLRKTMATHGV 458


>gi|125558027|gb|EAZ03563.1| hypothetical protein OsI_25699 [Oryza sativa Indica Group]
          Length = 528

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 226/532 (42%), Positives = 321/532 (60%), Gaps = 24/532 (4%)

Query: 176 GRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRD---LFSWTCLVDGFSKC 232
            RR FD + D + V    +  GYV+   V  +++LF  M   D   +      +  FS  
Sbjct: 3   ARRAFDEIPDPNPVIVTAMASGYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSAS 62

Query: 233 GKVE-----------IAREIFYRMPNRNLVSWNAMINGYMKAG--DVDSACELFDDMEIR 279
            +V            IA+  F     RN    N M++ Y K G  D++ A ++FD ME R
Sbjct: 63  ARVPDRGVTASLHALIAKIGF----ERNAGVVNTMLDSYAKGGSRDLEVARKVFDTME-R 117

Query: 280 DLITWNSMIAGYELNGRFMEALELLETMLI--GDVLPNDATLVSALSAVAGLAVLNKGRW 337
           D+++WNSMIA Y  NG   EA+ L   ML   G +  N   L + L A A    +  G+ 
Sbjct: 118 DVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKH 177

Query: 338 MHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGM 397
           +H+ +V+ G   +  +GT ++ MYSKCG +E A   FR I +K +  W+AMI G GMHG 
Sbjct: 178 IHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGR 237

Query: 398 ATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYG 457
             +AL++F +M R G++P  ITFI VL ACSHAGL+++GR ++N M  ++GIE  +EHYG
Sbjct: 238 GQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYG 297

Query: 458 CLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPD 517
           C+VD+L R G L+EA S I+ M ++P+  IW +LLS  R H N ++ E +   L ++   
Sbjct: 298 CMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELDAS 357

Query: 518 TIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQ 577
             G YV+LSNIYA AG W  V  +R ++K R   K PG SS E +G ++ F VGDKSHPQ
Sbjct: 358 NSGYYVLLSNIYAEAGMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQ 417

Query: 578 TDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSR 637
             EI+S L ++  +++ AG+VP+T  VL  + D++EKE+ L  HSE+LA+AF L+N   R
Sbjct: 418 HIEIYSYLEKLLERMQEAGYVPNTGSVLHDL-DEEEKESALRIHSEKLAVAFALMNSVPR 476

Query: 638 SPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           S I I+KNLRVC+DCH+  K ++ I  REII+RD  RFHHFK+G CSC+D+W
Sbjct: 477 SVIHIIKNLRVCSDCHTAMKFITKITEREIIIRDLQRFHHFKDGLCSCRDYW 528



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/311 (26%), Positives = 152/311 (48%), Gaps = 25/311 (8%)

Query: 37  TQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKC 96
           T  LHAL  K     ++G+ + +L  Y      +L  AR +FD + +   +V +N +I  
Sbjct: 71  TASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTMER--DVVSWNSMIAL 128

Query: 97  YVFNQRSHEALTLFCDLLD--RFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
           Y  N  S EA+ L+  +L+    +  +   L  V+   A  GAI+ GK IH  V ++G  
Sbjct: 129 YAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKHIHNQVVRMGLE 188

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
            + +V +S+V MY+K G +++  R F  + +K+++SW+ +I GY   G  + A+++F EM
Sbjct: 189 ENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEM 248

Query: 215 PDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNR-----NLVSWNAMINGYMKAGD 265
               L     ++  ++   S  G ++  R  +  M         +  +  M++   +AG 
Sbjct: 249 KRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGC 308

Query: 266 VDSACELFDDMEIR-DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDAT------ 318
           +D A  L  +M+++ D   W ++++      R  + +EL E M +  +   DA+      
Sbjct: 309 LDEAYSLIKEMKVKPDAAIWGALLSA----CRIHKNVELAE-MSVKRLFELDASNSGYYV 363

Query: 319 LVSALSAVAGL 329
           L+S + A AG+
Sbjct: 364 LLSNIYAEAGM 374


>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 668

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/584 (37%), Positives = 350/584 (59%), Gaps = 14/584 (2%)

Query: 118 LLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGR 177
           L PD      ++K    LG +K+GK +H  +    F  D  + +S++ MYAK G +++ R
Sbjct: 87  LEPDRTIYNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILFMYAKCGSLEIAR 146

Query: 178 RVFDAMDDKDLVSWNCLIDGYVKKG---EVEVAMKLFDEMPDRDL----FSWTCLVDGFS 230
           +VFD M  KD+V+W  +I GY + G       A+ LF EM    L    F+ + LV    
Sbjct: 147 QVFDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPNEFALSSLVKCCG 206

Query: 231 KCGKVEIAREI----FYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNS 286
             G     ++I    +      N+   +++++ Y + G++  +  +FD++E ++ ++WN+
Sbjct: 207 FLGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFDELESKNEVSWNA 266

Query: 287 MIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNG 346
           +I+G+   G   EAL L   M        + T  + L + +    L +G+W+H++++K+G
Sbjct: 267 LISGFARKGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTTGSLEQGKWLHAHMMKSG 326

Query: 347 FVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFN 406
             + G +G  L+ MY+K G+I  A  VF  + K  V    +M++G   HG+  +A++LF 
Sbjct: 327 KKLVGYVGNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNSMLIGYAQHGLGKEAVELFE 386

Query: 407 KMCR-MGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCR 465
           +M   + ++P  ITF+ VL ACSHAGL+++G  YF +M   YG+EP + HY  +VD+  R
Sbjct: 387 EMMLWVEIEPNDITFLSVLTACSHAGLLDEGLYYFELM-KKYGLEPKLSHYTTVVDLFGR 445

Query: 466 TGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVL 525
            G L++AKS IE MP+ PN  IW +LL  ++ H N ++G YAA  ++++ P   G + +L
Sbjct: 446 AGLLDQAKSFIEEMPIEPNATIWGALLGASKMHKNTEMGAYAAQKVLELDPFYPGAHTLL 505

Query: 526 SNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKL 585
           SNIYA+AGQW  V++VR+ MK  G +K+P  S +E    +H F   D SHPQ ++++   
Sbjct: 506 SNIYASAGQWKDVAKVRKEMKDSGLKKEPACSWVEIENSVHIFSANDISHPQKNKVYEMW 565

Query: 586 SEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKN 645
             +  K+K  G+VPDT+ V + + DQ+EKE  L+ HSE+LA+AF L+N K  S IRI+KN
Sbjct: 566 ENLNQKIKEIGYVPDTSHVHVFV-DQQEKELNLQYHSEKLALAFALLNTKPGSVIRIMKN 624

Query: 646 LRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           +RVC DCHS  K +S +  REIIVRD +RFHHF++GSCSC+D+W
Sbjct: 625 IRVCGDCHSAIKYVSLVVKREIIVRDTNRFHHFRDGSCSCRDYW 668



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 106/347 (30%), Positives = 183/347 (52%), Gaps = 14/347 (4%)

Query: 62  LYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYV---FNQRSHEALTLFCDLLDRFL 118
           L++     +L  AR +FD +     +V +  +I  Y    +   +  AL LF +++   L
Sbjct: 133 LFMYAKCGSLEIARQVFDEMCVK-DVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGL 191

Query: 119 LPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRR 178
            P+ F L  ++K    LG+  +GKQIHG  +K GF  + FV SSLV MYA+ GE+   R 
Sbjct: 192 RPNEFALSSLVKCCGFLGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRL 251

Query: 179 VFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGK 234
           VFD ++ K+ VSWN LI G+ +KGE E A+ LF +M         F+++ L+   S  G 
Sbjct: 252 VFDELESKNEVSWNALISGFARKGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTTGS 311

Query: 235 VEIAREIFYRM--PNRNLVSW--NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAG 290
           +E  + +   M    + LV +  N +++ Y K+G++  A ++FD +   D+++ NSM+ G
Sbjct: 312 LEQGKWLHAHMMKSGKKLVGYVGNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNSMLIG 371

Query: 291 YELNGRFMEALELLETMLIG-DVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVV 349
           Y  +G   EA+EL E M++  ++ PND T +S L+A +   +L++G +    + K G   
Sbjct: 372 YAQHGLGKEAVELFEEMMLWVEIEPNDITFLSVLTACSHAGLLDEGLYYFELMKKYGLEP 431

Query: 350 DGVLGTLLIQMYSKCGSIESALTVFRAIS-KKKVGHWTAMIVGLGMH 395
                T ++ ++ + G ++ A +    +  +     W A++    MH
Sbjct: 432 KLSHYTTVVDLFGRAGLLDQAKSFIEEMPIEPNATIWGALLGASKMH 478



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 107/231 (46%), Gaps = 8/231 (3%)

Query: 293 LNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV 352
           LN      L +L+ +  G + P+       L     L  L +G+ +H++++ + F  D V
Sbjct: 68  LNPNSTTGLHVLDLINNGSLEPDRTIYNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLV 127

Query: 353 LGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGM---ATQALDLFNKMC 409
           +   ++ MY+KCGS+E A  VF  +  K V  WT+MI G    G    AT AL LF +M 
Sbjct: 128 IKNSILFMYAKCGSLEIARQVFDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMV 187

Query: 410 RMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYL 469
           R G++P       ++  C   G   DG++        YG +  +     LVD+  R G L
Sbjct: 188 RDGLRPNEFALSSLVKCCGFLGSCVDGKQIHGCCWK-YGFQENVFVGSSLVDMYARCGEL 246

Query: 470 EEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIG 520
            E++   + +  + N V W +L+SG    G    GE A    +K+  +  G
Sbjct: 247 RESRLVFDELESK-NEVSWNALISGFARKGE---GEEALGLFVKMQREGFG 293


>gi|145333540|ref|NP_001078415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658995|gb|AEE84395.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 462

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 200/437 (45%), Positives = 293/437 (67%), Gaps = 2/437 (0%)

Query: 254 NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL 313
           N++++ Y   GDV SA ++FD M  +DL+ WNS+I G+  NG+  EAL L   M    + 
Sbjct: 27  NSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIK 86

Query: 314 PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTV 373
           P+  T+VS LSA A +  L  G+ +H Y++K G   +     +L+ +Y++CG +E A T+
Sbjct: 87  PDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTL 146

Query: 374 FRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKM-CRMGMKPTAITFIGVLNACSHAGL 432
           F  +  K    WT++IVGL ++G   +A++LF  M    G+ P  ITF+G+L ACSH G+
Sbjct: 147 FDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGM 206

Query: 433 VNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLL 492
           V +G  YF  M  +Y IEP IEH+GC+VD+L R G +++A   I+SMPM+PN VIW +LL
Sbjct: 207 VKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLL 266

Query: 493 SGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRK 552
                HG+ D+ E+A   ++++ P+  G YV+LSN+YA+  +W  V ++R+ M + G +K
Sbjct: 267 GACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKK 326

Query: 553 DPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQK 612
            PG S +E    +HEF++GDKSHPQ+D I++KL EM  +L++ G+VP  + V + +E++ 
Sbjct: 327 VPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEE- 385

Query: 613 EKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDN 672
           EKE  +  HSE++AIAF LI+   RSPI +VKNLRVC DCH   KL+S +YNREI+VRD 
Sbjct: 386 EKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDR 445

Query: 673 SRFHHFKNGSCSCKDFW 689
           SRFHHFKNGSCSC+D+W
Sbjct: 446 SRFHHFKNGSCSCQDYW 462



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 147/311 (47%), Gaps = 52/311 (16%)

Query: 135 LGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCL 194
           +  ++ G+ IH +V + GFG   +V +SL+ +YA  G++    +VFD M +KDLV+WN +
Sbjct: 1   MADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSV 60

Query: 195 IDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREIFYRMP---- 246
           I+G+ + G+ E A+ L+ EM  +    D F+   L+   +K G + + + +   M     
Sbjct: 61  INGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGL 120

Query: 247 NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLET 306
            RNL S N +++ Y + G V+ A  LFD+M  ++ ++W S+I G  +NG   EA+EL + 
Sbjct: 121 TRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKY 180

Query: 307 MLIGD-VLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCG 365
           M   + +LP + T V  L A                                    S CG
Sbjct: 181 MESTEGLLPCEITFVGILYAC-----------------------------------SHCG 205

Query: 366 SIESALTVFRAISKK-----KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITF 420
            ++     FR + ++     ++ H+  M+  L   G   +A +       M M+P  + +
Sbjct: 206 MVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKS---MPMQPNVVIW 262

Query: 421 IGVLNACSHAG 431
             +L AC+  G
Sbjct: 263 RTLLGACTVHG 273



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 160/332 (48%), Gaps = 32/332 (9%)

Query: 38  QQLHALSVKT---NLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           + +H++ +++   +LIY   + + LL LY +    ++  A  +FD+ +    LV +N +I
Sbjct: 8   ETIHSVVIRSGFGSLIY---VQNSLLHLYAN--CGDVASAYKVFDK-MPEKDLVAWNSVI 61

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
             +  N +  EAL L+ ++  + + PD FT+  ++   A++GA+  GK++H  + K+G  
Sbjct: 62  NGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLT 121

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
            +    + L+ +YA+ G ++  + +FD M DK+ VSW  LI G    G  + A++LF  M
Sbjct: 122 RNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYM 181

Query: 215 PDRD-----LFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS-----WNAMINGYMKAG 264
              +       ++  ++   S CG V+   E F RM     +      +  M++   +AG
Sbjct: 182 ESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAG 241

Query: 265 DVDSACELFDDMEIR-DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPN---DATLV 320
            V  A E    M ++ +++ W +++    ++G     L     + I  + PN   D  L+
Sbjct: 242 QVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGD--SDLAEFARIQILQLEPNHSGDYVLL 299

Query: 321 SALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV 352
           S + A       ++ RW     ++   + DGV
Sbjct: 300 SNMYA-------SEQRWSDVQKIRKQMLRDGV 324


>gi|224138422|ref|XP_002322810.1| predicted protein [Populus trichocarpa]
 gi|222867440|gb|EEF04571.1| predicted protein [Populus trichocarpa]
          Length = 562

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/563 (39%), Positives = 330/563 (58%), Gaps = 40/563 (7%)

Query: 166 MYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCL 225
           MY K GEI      F+AM  ++++S N LI+G+V+ G+++ A+K+FDEM +R++ +W  +
Sbjct: 1   MYFKMGEIQEAIAFFNAMPMRNIMSHNILINGHVQHGDLDSAIKVFDEMLERNVATWNAM 60

Query: 226 VDGFSKCGKVEIAREIFYRM------PNR------------------------------- 248
           V G  +    E    +F  M      P+                                
Sbjct: 61  VSGLIQFEFNENGLFLFREMHELGFLPDEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGY 120

Query: 249 --NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLET 306
             NLV  +++ + YMK+G +    ++   M IR+++ WN++IAG   NG F   L+L   
Sbjct: 121 EFNLVVGSSLAHMYMKSGSLGEGEKVIKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNM 180

Query: 307 MLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGS 366
           M +  + P+  TLVS +S+ A LA L +G+ +H+  +K G      + + LI MYSKCG 
Sbjct: 181 MKMSGLRPDKITLVSVISSSAELATLFQGQQIHAEAIKAGANSAVAVLSSLISMYSKCGC 240

Query: 367 IESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNA 426
           +E ++             W++MI   G HG   +A+ LF +M + G+    +TF+ +L A
Sbjct: 241 LEDSMKALLDCEHPDSVLWSSMIAAYGFHGRGEEAVHLFEQMEQEGLGGNDVTFLSLLYA 300

Query: 427 CSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFV 486
           CSH GL   G  +F +M+  YG++P +EHY C+VD+L R+G L+EA++ I SMP+  + V
Sbjct: 301 CSHNGLKEKGMGFFKLMVEKYGLKPRLEHYTCVVDLLGRSGCLDEAEAMIRSMPLEADVV 360

Query: 487 IWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMK 546
           IW +LLS  R H N D+    A  ++++ P     YV+LSNI+A+A +W  VS+VR  M+
Sbjct: 361 IWKTLLSACRIHRNADMATRTAEEILRLNPQDSATYVLLSNIHASAKRWKDVSKVRTTMR 420

Query: 547 KRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLL 606
            R  +K+PG S +E +  + +F +GDKSHP ++EI   L E+  ++K  G+VPDT  V  
Sbjct: 421 DRNVKKEPGVSWLEVKNRVFQFSMGDKSHPMSEEIDLYLKELMEEMKLRGYVPDTATVFH 480

Query: 607 CIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNRE 666
              D +EKE  L NHSE+LAIAFGL+N+   SPIR++KNLR+C+DCH   KL+S I NRE
Sbjct: 481 DT-DSEEKENSLVNHSEKLAIAFGLMNIPPGSPIRVMKNLRICSDCHVAIKLISDINNRE 539

Query: 667 IIVRDNSRFHHFKNGSCSCKDFW 689
           IIVRD SRFHHFK+G CSC D+W
Sbjct: 540 IIVRDTSRFHHFKHGKCSCGDYW 562



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 101/374 (27%), Positives = 176/374 (47%), Gaps = 23/374 (6%)

Query: 61  SLYVDPHIN--NLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFL 118
           ++ ++ H+   +L  A  +FD +L+  ++  +N ++   +  + +   L LF ++ +   
Sbjct: 27  NILINGHVQHGDLDSAIKVFDEMLER-NVATWNAMVSGLIQFEFNENGLFLFREMHELGF 85

Query: 119 LPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRR 178
           LPD FTL  V++G A L A   GKQ+H  V K G+ F+  V SSL  MY K G +  G +
Sbjct: 86  LPDEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGYEFNLVVGSSLAHMYMKSGSLGEGEK 145

Query: 179 VFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKC 232
           V  AM  +++V+WN LI G  + G  E  + L++ M      PD+       LV   S  
Sbjct: 146 VIKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNMMKMSGLRPDK-----ITLVSVISSS 200

Query: 233 GKV-------EIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWN 285
            ++       +I  E      N  +   +++I+ Y K G ++ + +   D E  D + W+
Sbjct: 201 AELATLFQGQQIHAEAIKAGANSAVAVLSSLISMYSKCGCLEDSMKALLDCEHPDSVLWS 260

Query: 286 SMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIV-K 344
           SMIA Y  +GR  EA+ L E M    +  ND T +S L A +   +  KG      +V K
Sbjct: 261 SMIAAYGFHGRGEEAVHLFEQMEQEGLGGNDVTFLSLLYACSHNGLKEKGMGFFKLMVEK 320

Query: 345 NGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS-KKKVGHWTAMIVGLGMHGMATQALD 403
            G        T ++ +  + G ++ A  + R++  +  V  W  ++    +H  A  A  
Sbjct: 321 YGLKPRLEHYTCVVDLLGRSGCLDEAEAMIRSMPLEADVVIWKTLLSACRIHRNADMATR 380

Query: 404 LFNKMCRMGMKPTA 417
              ++ R+  + +A
Sbjct: 381 TAEEILRLNPQDSA 394


>gi|115469684|ref|NP_001058441.1| Os06g0694300 [Oryza sativa Japonica Group]
 gi|53791823|dbj|BAD53889.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|53792844|dbj|BAD53877.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113596481|dbj|BAF20355.1| Os06g0694300 [Oryza sativa Japonica Group]
 gi|125598347|gb|EAZ38127.1| hypothetical protein OsJ_22476 [Oryza sativa Japonica Group]
          Length = 648

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 202/476 (42%), Positives = 308/476 (64%), Gaps = 3/476 (0%)

Query: 216 DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDD 275
           DR  F    L+  +  CG V  AR++F  M  ++++SW +++  Y ++GD+ SA E+F  
Sbjct: 174 DRHRFVENSLIGAYVACGDVGAARKVFDEMVEKDVISWTSIVVAYTRSGDMRSAEEVFGR 233

Query: 276 MEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKG 335
             ++D++ W +M+ GY  N   ++ALE+ + M    ++ ++ +L  A+SA A L  L + 
Sbjct: 234 CPVKDMVAWTAMVTGYAQNAMPVKALEVFDRMAELGMVIDEVSLTGAISACAQLGALRRA 293

Query: 336 RWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMH 395
            W+     + GF  + V+G+ L+ MY+KCG I+ A  VF  + +K V  +++MI GL  H
Sbjct: 294 AWVQEIAERTGFGNNVVVGSGLVDMYAKCGLIDEASKVFYGMQEKNVYTYSSMIAGLASH 353

Query: 396 GMATQALDLFNKMC-RMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIE 454
           G A++A+ LF +M  R  ++P  +TFIGVL ACSHAG+V +GR YF  M + YGI P+ +
Sbjct: 354 GRASEAIALFKEMVNRANVEPNHVTFIGVLTACSHAGMVGEGRYYFAQMKDKYGIMPSAD 413

Query: 455 HYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKV 514
           HY C+VD+L R G ++EA   + SM + P+  +W +LL   R HG  +I +  A +L K+
Sbjct: 414 HYACMVDLLGRAGLVDEALDLVRSMSVTPHGGVWGALLGACRIHGKSEIAKVVAEHLFKL 473

Query: 515 APDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHR-GVLHEFVVGDK 573
            P++IG YV+LSNI A+AG+W++VS+VR +M+K+  +KDP  S  E R G++H+F  GD 
Sbjct: 474 EPESIGNYVLLSNILASAGKWEEVSKVRILMRKQRLKKDPAVSLFEGRDGLVHQFFAGDN 533

Query: 574 SHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLIN 633
           +HP+T EI   L E+  KLK  G+VP  + ++  + D+ EKE  L  HSE+LA++FGL+ 
Sbjct: 534 AHPRTHEIKKALLELVAKLKLEGYVPILSSIVYDVNDE-EKERLLMGHSEKLALSFGLLT 592

Query: 634 VKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           + S   IRI+KNLR+C+DCH   +L+S + + EIIVRDN RFHHFKNG CSC  FW
Sbjct: 593 LGSGCTIRIIKNLRICDDCHLFMQLVSRVESVEIIVRDNMRFHHFKNGECSCGGFW 648



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 158/361 (43%), Gaps = 77/361 (21%)

Query: 152 GFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLF 211
           GF   +FV +SL+  Y   G++   R+VFD M +KD++SW  ++  Y + G++  A ++F
Sbjct: 172 GFDRHRFVENSLIGAYVACGDVGAARKVFDEMVEKDVISWTSIVVAYTRSGDMRSAEEVF 231

Query: 212 DEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMP------------------------- 246
              P +D+ +WT +V G+++      A E+F RM                          
Sbjct: 232 GRCPVKDMVAWTAMVTGYAQNAMPVKALEVFDRMAELGMVIDEVSLTGAISACAQLGALR 291

Query: 247 --------------NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYE 292
                           N+V  + +++ Y K G +D A ++F  M+ +++ T++SMIAG  
Sbjct: 292 RAAWVQEIAERTGFGNNVVVGSGLVDMYAKCGLIDEASKVFYGMQEKNVYTYSSMIAGLA 351

Query: 293 LNGRFMEALELLETML-IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDG 351
            +GR  EA+ L + M+   +V PN  T +  L+A +   ++ +GR+  +           
Sbjct: 352 SHGRASEAIALFKEMVNRANVEPNHVTFIGVLTACSHAGMVGEGRYYFA----------- 400

Query: 352 VLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRM 411
                  QM  K G + SA             H+  M+  LG  G+  +ALDL      M
Sbjct: 401 -------QMKDKYGIMPSA------------DHYACMVDLLGRAGLVDEALDLVRS---M 438

Query: 412 GMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP-TIEHYGCLVDILCRTGYLE 470
            + P    +  +L AC   G     +     +   + +EP +I +Y  L +IL   G  E
Sbjct: 439 SVTPHGGVWGALLGACRIHGKSEIAKVVAEHL---FKLEPESIGNYVLLSNILASAGKWE 495

Query: 471 E 471
           E
Sbjct: 496 E 496



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 112/239 (46%), Gaps = 12/239 (5%)

Query: 69  NNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCV 128
            ++  A  +F R      +V +  ++  Y  N    +AL +F  + +  ++ D  +L   
Sbjct: 222 GDMRSAEEVFGRC-PVKDMVAWTAMVTGYAQNAMPVKALEVFDRMAELGMVIDEVSLTGA 280

Query: 129 IKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDL 188
           I   A+LGA++    +  +  + GFG +  V S LV MYAK G ID   +VF  M +K++
Sbjct: 281 ISACAQLGALRRAAWVQEIAERTGFGNNVVVGSGLVDMYAKCGLIDEASKVFYGMQEKNV 340

Query: 189 VSWNCLIDGYVKKGEVEVAMKLFDEMPDR-----DLFSWTCLVDGFSKCGKVEIAREIFY 243
            +++ +I G    G    A+ LF EM +R     +  ++  ++   S  G V   R  F 
Sbjct: 341 YTYSSMIAGLASHGRASEAIALFKEMVNRANVEPNHVTFIGVLTACSHAGMVGEGRYYFA 400

Query: 244 RMPNRNLVSWNA-----MINGYMKAGDVDSACELFDDMEIRDL-ITWNSMIAGYELNGR 296
           +M ++  +  +A     M++   +AG VD A +L   M +      W +++    ++G+
Sbjct: 401 QMKDKYGIMPSADHYACMVDLLGRAGLVDEALDLVRSMSVTPHGGVWGALLGACRIHGK 459


>gi|413934702|gb|AFW69253.1| hypothetical protein ZEAMMB73_589560 [Zea mays]
          Length = 664

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 201/476 (42%), Positives = 304/476 (63%), Gaps = 3/476 (0%)

Query: 216 DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDD 275
           D+  F    L+  +  CG V  AR++F  M  ++++SW +++  Y +  D+ SA E+F  
Sbjct: 190 DKHRFVENSLISAYVACGDVGAARKVFDEMLVKDVISWTSIVVAYSRIRDMGSAEEVFAL 249

Query: 276 MEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKG 335
             ++D++ W +M+ GY  N   ++ALE  E M +  +  ++ +L  A+SA A L  + + 
Sbjct: 250 CPVKDMVAWTAMVTGYAQNAMPVKALEAFEQMAVAGMPIDEVSLTGAISACAQLGAVKRA 309

Query: 336 RWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMH 395
            W+     +NG   + V+G+ L+ MY+KCG I+ A  VF  +  K V  +++MIVGL  H
Sbjct: 310 AWVQEIAERNGLGRNVVVGSGLVDMYAKCGLIDEARKVFEGMHDKNVYTYSSMIVGLASH 369

Query: 396 GMATQALDLFNKMCRMG-MKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIE 454
           G A   + LFN M R   ++P  +TFIGVL ACSHAG+V +GR YF  M + YGI P+ +
Sbjct: 370 GRANDVIALFNDMVRRADVEPNHVTFIGVLTACSHAGMVKEGRYYFAQMKDRYGILPSAD 429

Query: 455 HYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKV 514
           HY C+VD+L R+G + EA   ++SM + P+  +W +LL   R HGN ++ + AA +L ++
Sbjct: 430 HYACMVDLLARSGLVTEALDLVKSMTVEPHGGVWGALLGACRIHGNTEVAKIAAEHLFRL 489

Query: 515 APDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHR-GVLHEFVVGDK 573
            P+ IG YV+LSN  A+AG+WD+VS++R++M+ RG +KDP  S  E R G +H+F  GD 
Sbjct: 490 EPEGIGNYVLLSNTLASAGEWDEVSKLRKLMRIRGLKKDPAVSWFEGRDGFVHQFFAGDN 549

Query: 574 SHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLIN 633
           +HP   EI  +L E+R KL  AG+VP  + V+  + ++ EKE  L  HSE+LA++FGL+ 
Sbjct: 550 THPSMHEIKKRLLELREKLNLAGYVPILSSVVYNVSEE-EKERLLMGHSEKLALSFGLLT 608

Query: 634 VKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           ++SRS IRIVKNLR+C DCH   +L+S +   EI+VRDN RFHHF++G CSC  FW
Sbjct: 609 LESRSSIRIVKNLRICEDCHLFIRLVSKVEPIEILVRDNMRFHHFRDGECSCGGFW 664



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 103/404 (25%), Positives = 169/404 (41%), Gaps = 84/404 (20%)

Query: 71  LHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL-----DRFLLPDNFTL 125
           L YA ++F   L  P   L   L++     Q   E   LF  L      D   LP  F  
Sbjct: 104 LRYAVAVFSS-LSPPDPFLAAALLRFAHLTQPPLETFRLFSRLRCAHGSDLPFLP--FAF 160

Query: 126 PCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK--FVLSSLVSMYAKFGEIDLGRRVFDAM 183
             + K AA   ++      H +   LG GFDK  FV +SL+S Y   G++   R+VFD M
Sbjct: 161 SPLAKSAAAARSLHAAASAHAVSLLLG-GFDKHRFVENSLISAYVACGDVGAARKVFDEM 219

Query: 184 DDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFY 243
             KD++SW  ++  Y +  ++  A ++F   P +D+ +WT +V G+++      A E F 
Sbjct: 220 LVKDVISWTSIVVAYSRIRDMGSAEEVFALCPVKDMVAWTAMVTGYAQNAMPVKALEAFE 279

Query: 244 RMP---------------------------------------NRNLVSWNAMINGYMKAG 264
           +M                                         RN+V  + +++ Y K G
Sbjct: 280 QMAVAGMPIDEVSLTGAISACAQLGAVKRAAWVQEIAERNGLGRNVVVGSGLVDMYAKCG 339

Query: 265 DVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETML-IGDVLPNDATLVSAL 323
            +D A ++F+ M  +++ T++SMI G   +GR  + + L   M+   DV PN  T +  L
Sbjct: 340 LIDEARKVFEGMHDKNVYTYSSMIVGLASHGRANDVIALFNDMVRRADVEPNHVTFIGVL 399

Query: 324 SAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVG 383
           +A +   ++ +GR+  +                  QM  + G + SA             
Sbjct: 400 TACSHAGMVKEGRYYFA------------------QMKDRYGILPSA------------D 429

Query: 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNAC 427
           H+  M+  L   G+ T+ALDL   M    ++P    +  +L AC
Sbjct: 430 HYACMVDLLARSGLVTEALDLVKSMT---VEPHGGVWGALLGAC 470



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 114/253 (45%), Gaps = 17/253 (6%)

Query: 87  LVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHG 146
           +V +  ++  Y  N    +AL  F  +    +  D  +L   I   A+LGA+K    +  
Sbjct: 255 MVAWTAMVTGYAQNAMPVKALEAFEQMAVAGMPIDEVSLTGAISACAQLGAVKRAAWVQE 314

Query: 147 LVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEV 206
           +  + G G +  V S LV MYAK G ID  R+VF+ M DK++ +++ +I G    G    
Sbjct: 315 IAERNGLGRNVVVGSGLVDMYAKCGLIDEARKVFEGMHDKNVYTYSSMIVGLASHGRAND 374

Query: 207 AMKLFDEMPDR-----DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNA-----M 256
            + LF++M  R     +  ++  ++   S  G V+  R  F +M +R  +  +A     M
Sbjct: 375 VIALFNDMVRRADVEPNHVTFIGVLTACSHAGMVKEGRYYFAQMKDRYGILPSADHYACM 434

Query: 257 INGYMKAGDVDSACELFDDMEIRDL-ITWNSMIAGYELNGRF------MEALELLETMLI 309
           ++   ++G V  A +L   M +      W +++    ++G         E L  LE   I
Sbjct: 435 VDLLARSGLVTEALDLVKSMTVEPHGGVWGALLGACRIHGNTEVAKIAAEHLFRLEPEGI 494

Query: 310 GDVLPNDATLVSA 322
           G+ +    TL SA
Sbjct: 495 GNYVLLSNTLASA 507


>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
          Length = 810

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 230/658 (34%), Positives = 360/658 (54%), Gaps = 12/658 (1%)

Query: 40  LHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVF 99
           LH  ++K  L  H  + + LL  Y    +  L  AR +F   +     V YN ++     
Sbjct: 157 LHPFAIKFGLDTHVFVCNTLLDAYCKHGL--LAAARRVFLE-MHDKDAVTYNAMMMGCSK 213

Query: 100 NQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFV 159
                +AL LF  +    +   +FT   ++  AA +  +  G Q+H LV +     + FV
Sbjct: 214 EGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFV 273

Query: 160 LSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP---- 215
            +SL+  Y+K   +D  RR+FD M ++D VS+N +I  Y         ++LF EM     
Sbjct: 274 NNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGF 333

Query: 216 DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS----WNAMINGYMKAGDVDSACE 271
           DR +  +  ++        V I ++I  ++    L S     NA+I+ Y K G +D+A  
Sbjct: 334 DRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKS 393

Query: 272 LFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAV 331
            F +   +  I+W ++I GY  NG+  EAL+L   M    + P+ AT  S + A + LA+
Sbjct: 394 NFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAM 453

Query: 332 LNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVG 391
           +  GR +HSY++++G+      G++L+ MY+KCG ++ AL  F  + ++    W A+I  
Sbjct: 454 IGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISA 513

Query: 392 LGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP 451
              +G A  A+ +F  M   G  P ++TF+ VL ACSH GL ++  +YF++M + Y I P
Sbjct: 514 YAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISP 573

Query: 452 TIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNL 511
             EHY C++D L R G   + +  +  MP + + +IW S+L   R HGN+++   AA+ L
Sbjct: 574 WKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKL 633

Query: 512 IKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVG 571
             + P     YV+LSNIYA AGQW+  + V+++M+ RG RK+ G S +E +  ++ F   
Sbjct: 634 FGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASN 693

Query: 572 DKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGL 631
           D + P  DEI  +L  +  ++   G+ PD T  L  + D + K   L+ HSERLAIAF L
Sbjct: 694 DLTSPMIDEIKDELDRLYKEMDKQGYKPDITCALHMV-DHELKLESLKYHSERLAIAFAL 752

Query: 632 INVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           +N  + +PIRI+KNL  C DCH+V K++S I NR+IIVRD+ RFHHFK+G CSC D+W
Sbjct: 753 MNTPAGTPIRIMKNLTACLDCHAVIKMISKIVNRDIIVRDSRRFHHFKDGVCSCGDYW 810



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 123/450 (27%), Positives = 214/450 (47%), Gaps = 30/450 (6%)

Query: 84  HPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQ 143
           H +   + ++++ +    R+ +AL+LF  +L   ++PD  T+  V+              
Sbjct: 102 HRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPG-----CTVPS 156

Query: 144 IHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGE 203
           +H    K G     FV ++L+  Y K G +   RRVF  M DKD V++N ++ G  K+G 
Sbjct: 157 LHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGL 216

Query: 204 VEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIARE----IFYRMPNRNLVSWNA 255
              A++LF  M    +    F+++ ++   +    + +  +    +       N+   N+
Sbjct: 217 HTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNS 276

Query: 256 MINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETM----LIGD 311
           +++ Y K   +D    LFD+M  RD +++N +IA Y  N      L L   M        
Sbjct: 277 LLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQ 336

Query: 312 VLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESAL 371
           VLP      + LS    L  ++ G+ +H+ +V  G   + +LG  LI MYSKCG +++A 
Sbjct: 337 VLP----YATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAK 392

Query: 372 TVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAG 431
           + F   S+K    WTA+I G   +G   +AL LF+ M R G++P   TF  ++ A S   
Sbjct: 393 SNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLA 452

Query: 432 LVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSL 491
           ++  GR+  + +I   G + ++     LVD+  + G L+EA  T + MP R N + W ++
Sbjct: 453 MIGLGRQLHSYLIRS-GYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPER-NSISWNAV 510

Query: 492 LSGARNHGNKDIGEYAANNLIKVAPDTIGC 521
           +S   ++G        A N IK+    + C
Sbjct: 511 ISAYAHYGE-------AKNAIKMFEGMLHC 533



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/390 (22%), Positives = 168/390 (43%), Gaps = 45/390 (11%)

Query: 147 LVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEV 206
           L ++L  G     L SL+S     G +   R +FD M  K++ S N ++  Y   G++  
Sbjct: 42  LTYRLNLG-----LRSLLSS----GHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPA 92

Query: 207 AMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM------PNRNLVS-------- 252
           A  LF   P R+  +WT ++   +  G+   A  +F  M      P+R  V+        
Sbjct: 93  AQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGC 152

Query: 253 --------------------WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYE 292
                                N +++ Y K G + +A  +F +M  +D +T+N+M+ G  
Sbjct: 153 TVPSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCS 212

Query: 293 LNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV 352
             G   +AL+L   M    +     T  S L+  AG+A L  G  +H+ ++++  V++  
Sbjct: 213 KEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVF 272

Query: 353 LGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG 412
           +   L+  YSKC  ++    +F  + ++    +  +I     +  A   L LF +M ++G
Sbjct: 273 VNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLG 332

Query: 413 MKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEA 472
                + +  +L+       V+ G++    ++   G+         L+D+  + G L+ A
Sbjct: 333 FDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVL-LGLASEDLLGNALIDMYSKCGMLDAA 391

Query: 473 KSTIESMPMRPNFVIWMSLLSGARNHGNKD 502
           KS   +   + + + W +L++G   +G  +
Sbjct: 392 KSNFSNRSEK-SAISWTALITGYVQNGQHE 420


>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 573

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/558 (39%), Positives = 335/558 (60%), Gaps = 14/558 (2%)

Query: 142 KQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKK 201
           +Q+H  V   G   D  + + L+  YA+   ID    +FD +  +D  +W+ ++ G+ K 
Sbjct: 20  RQVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKTWSVMVGGFAKA 79

Query: 202 GEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS--- 252
           G+       F E+      PD   ++   ++        ++I R I   +    L+S   
Sbjct: 80  GDHAGCYATFRELLRCGVTPDN--YTLPFVIRTCRDRTDLQIGRVIHDVVLKHGLLSDHF 137

Query: 253 -WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGD 311
              ++++ Y K   V+ A  LF+ M  +DL+TW  MI  Y     + E+L L + M    
Sbjct: 138 VCASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYADCNAY-ESLVLFDRMREEG 196

Query: 312 VLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESAL 371
           V+P+   +V+ ++A A L  +++ R+ + YIV+NGF +D +LGT +I MY+KCGS+ESA 
Sbjct: 197 VVPDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDVILGTAMIDMYAKCGSVESAR 256

Query: 372 TVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAG 431
            VF  + +K V  W+AMI   G HG    A+DLF+ M    + P  +TF+ +L ACSHAG
Sbjct: 257 EVFDRMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPNRVTFVSLLYACSHAG 316

Query: 432 LVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSL 491
           L+ +G R+FN M  ++ + P ++HY C+VD+L R G L+EA   IE+M +  +  +W +L
Sbjct: 317 LIEEGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRLIEAMTVEKDERLWSAL 376

Query: 492 LSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFR 551
           L   R H   ++ E AAN+L+++ P   G YV+LSNIYA AG+W+KV++ R+MM +R  +
Sbjct: 377 LGACRIHSKMELAEKAANSLLELQPQNPGHYVLLSNIYAKAGKWEKVAKFRDMMTQRKLK 436

Query: 552 KDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQ 611
           K PG + IE     ++F VGD+SHPQ+ EI+  L  +  KL+ AG+VPDT  VL  +E++
Sbjct: 437 KIPGWTWIEVDNKTYQFSVGDRSHPQSKEIYEMLMSLIKKLEMAGYVPDTDFVLQDVEEE 496

Query: 612 KEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRD 671
            ++E  L  HSE+LAIAFGLI +    PIRI KNLRVC DCH+ +K++S I  R IIVRD
Sbjct: 497 VKQEM-LYTHSEKLAIAFGLIAIPEGEPIRISKNLRVCGDCHTFSKMVSSIMRRSIIVRD 555

Query: 672 NSRFHHFKNGSCSCKDFW 689
            +RFHHF +G+CSC D+W
Sbjct: 556 ANRFHHFNDGTCSCGDYW 573



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 107/399 (26%), Positives = 178/399 (44%), Gaps = 76/399 (19%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +Q+HA  V    +    I+++LL  Y       +  A S+FD +    S   +++++  +
Sbjct: 20  RQVHAHVVANGTLQDLVIANKLLYTYAQH--KAIDDAYSLFDGLTMRDSKT-WSVMVGGF 76

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
                       F +LL   + PDN+TLP VI+       ++ G+ IH +V K G   D 
Sbjct: 77  AKAGDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKHGLLSDH 136

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM--- 214
           FV +SLV MYAK   ++  +R+F+ M  KDLV+W  +I  Y      E ++ LFD M   
Sbjct: 137 FVCASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYADCNAYE-SLVLFDRMREE 195

Query: 215 ---PDR---------------------------------DLFSWTCLVDGFSKCGKVEIA 238
              PD+                                 D+   T ++D ++KCG VE A
Sbjct: 196 GVVPDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDVILGTAMIDMYAKCGSVESA 255

Query: 239 REIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFM 298
           RE+F RM  +N++SW+AMI  Y                             GY  +GR  
Sbjct: 256 REVFDRMKEKNVISWSAMIAAY-----------------------------GY--HGRGK 284

Query: 299 EALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKG-RWMHSYIVKNGFVVDGVLGTLL 357
           +A++L   ML   +LPN  T VS L A +   ++ +G R+ +S   ++    D    T +
Sbjct: 285 DAIDLFHMMLSCAILPNRVTFVSLLYACSHAGLIEEGLRFFNSMWEEHAVRPDVKHYTCM 344

Query: 358 IQMYSKCGSIESALTVFRAISKKKVGH-WTAMIVGLGMH 395
           + +  + G ++ AL +  A++ +K    W+A++    +H
Sbjct: 345 VDLLGRAGRLDEALRLIEAMTVEKDERLWSALLGACRIH 383



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 147/302 (48%), Gaps = 19/302 (6%)

Query: 40  LHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVF 99
           +H + +K  L+    + + L+ +Y    +  +  A+ +F+R+L    LV + ++I  Y  
Sbjct: 123 IHDVVLKHGLLSDHFVCASLVDMYAKCIV--VEDAQRLFERMLS-KDLVTWTVMIGAYA- 178

Query: 100 NQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFV 159
           +  ++E+L LF  + +  ++PD   +  V+   A+LGA+   +  +  + + GF  D  +
Sbjct: 179 DCNAYESLVLFDRMREEGVVPDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDVIL 238

Query: 160 LSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM----- 214
            ++++ MYAK G ++  R VFD M +K+++SW+ +I  Y   G  + A+ LF  M     
Sbjct: 239 GTAMIDMYAKCGSVESAREVFDRMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAI 298

Query: 215 -PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS-----WNAMINGYMKAGDVDS 268
            P+R  F    L+   S  G +E     F  M   + V      +  M++   +AG +D 
Sbjct: 299 LPNRVTF--VSLLYACSHAGLIEEGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDE 356

Query: 269 ACELFDDMEI-RDLITWNSMIAGYELNGRFMEALELLETML-IGDVLPNDATLVSALSAV 326
           A  L + M + +D   W++++    ++ +   A +   ++L +    P    L+S + A 
Sbjct: 357 ALRLIEAMTVEKDERLWSALLGACRIHSKMELAEKAANSLLELQPQNPGHYVLLSNIYAK 416

Query: 327 AG 328
           AG
Sbjct: 417 AG 418


>gi|15226299|ref|NP_178260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216969|sp|Q9ZVF4.1|PP140_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g01510, mitochondrial; Flags: Precursor
 gi|3785980|gb|AAC67327.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250369|gb|AEC05463.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 584

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 226/562 (40%), Positives = 334/562 (59%), Gaps = 13/562 (2%)

Query: 139 KEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGY 198
           K+ K+IH +V + GF     +L+ L+      G++   R+VFD M    +  WN L  GY
Sbjct: 25  KQLKKIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMHKPRIFLWNTLFKGY 84

Query: 199 VKKGEVEVAMKLFDEMPD----RDLFSWTCLVDGFSK-----CGKVEIAREIFYRMPNRN 249
           V+      ++ L+ +M D     D F++  +V   S+     CG    A  + Y      
Sbjct: 85  VRNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHVVKYGFGCLG 144

Query: 250 LVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLI 309
           +V+   ++  YMK G++ SA  LF+ M+++DL+ WN+ +A     G    ALE    M  
Sbjct: 145 IVA-TELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKMCA 203

Query: 310 GDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIES 369
             V  +  T+VS LSA   L  L  G  ++    K     + ++    + M+ KCG+ E+
Sbjct: 204 DAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNIIVENARLDMHLKCGNTEA 263

Query: 370 ALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSH 429
           A  +F  + ++ V  W+ MIVG  M+G + +AL LF  M   G++P  +TF+GVL+ACSH
Sbjct: 264 ARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGVLSACSH 323

Query: 430 AGLVNDGRRYFNMMI--NDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVI 487
           AGLVN+G+RYF++M+  ND  +EP  EHY C+VD+L R+G LEEA   I+ MP+ P+  I
Sbjct: 324 AGLVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMPVEPDTGI 383

Query: 488 WMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547
           W +LL     H +  +G+  A+ L++ APD    +V+LSNIYAAAG+WD V +VR  M+K
Sbjct: 384 WGALLGACAVHRDMILGQKVADVLVETAPDIGSYHVLLSNIYAAAGKWDCVDKVRSKMRK 443

Query: 548 RGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLC 607
            G +K    SS+E  G +H F  GDKSHPQ+  I+ KL E+  K++  G+VPDT  V   
Sbjct: 444 LGTKKVAAYSSVEFEGKIHFFNRGDKSHPQSKAIYEKLDEILKKIRKMGYVPDTCSVFHD 503

Query: 608 IEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREI 667
           +E  +EKE  L +HSE+LAIAFGLI  +   PIR++KNLR C+DCH+ +K +S + + EI
Sbjct: 504 VE-MEEKECSLSHHSEKLAIAFGLIKGRPGHPIRVMKNLRTCDDCHAFSKFVSSLTSTEI 562

Query: 668 IVRDNSRFHHFKNGSCSCKDFW 689
           I+RD +RFHHF+NG CSCK+FW
Sbjct: 563 IMRDKNRFHHFRNGVCSCKEFW 584


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/565 (38%), Positives = 340/565 (60%), Gaps = 15/565 (2%)

Query: 137 AIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLID 196
           AI+EG+++H  + K  +    ++ + L+ +Y K   +   RRV D M ++++VSW  +I 
Sbjct: 25  AIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMIS 84

Query: 197 GYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNL 250
           GY ++G    A+ LF EM      P+   F++  ++   +     ++ R+I   +   + 
Sbjct: 85  GYSQRGYASEALHLFVEMLMSGTAPNE--FTFATVLTSCTSSSGFQLGRQIHSLVIKTSF 142

Query: 251 VS----WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLET 306
            S     +++++ Y KAG +  A  +FD +  RD+++  ++I+GY   G   EAL+L   
Sbjct: 143 ESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRR 202

Query: 307 MLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGS 366
           +    +  N  T  S L+A++GLA L+ GR +HS++++       VL   LI MYSKCGS
Sbjct: 203 LQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGS 262

Query: 367 IESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG-MKPTAITFIGVLN 425
           +  +  +F ++ ++ V  W AM+VG   HG+  +A++LF  M     +KP ++TF+ VL+
Sbjct: 263 LTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLS 322

Query: 426 ACSHAGLVNDGRRYFNMMINDY-GIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPN 484
            CSH G+ + G   F  M+N   G EP IEHYGC+VD+  R G +EEA   I+ MP  P 
Sbjct: 323 GCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPT 382

Query: 485 FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREM 544
             IW SLL   R H N  IGE+ A  L+++  +  G YV+LSN+YA+AG+WD V  VRE+
Sbjct: 383 AAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASAGRWDDVRTVREL 442

Query: 545 MKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQV 604
           MK++   K+PG S IE    LH F   D+SHP+ +E+ +K+ E+  K+K AG+VP+ + V
Sbjct: 443 MKEKAVIKEPGRSWIELDQTLHTFHASDRSHPRKEEVFAKVRELSIKIKEAGYVPELSCV 502

Query: 605 LLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYN 664
           L  ++D+ +KE  L+ HSE+LA+AFGLI     +P+RI+KNLR+C DCH+  K LS +Y 
Sbjct: 503 LYDVDDE-QKEKILQGHSEKLALAFGLICTPGGTPVRIIKNLRICVDCHNFAKFLSRVYG 561

Query: 665 REIIVRDNSRFHHFKNGSCSCKDFW 689
           RE+ +RD +RFHH   G+CSC D+W
Sbjct: 562 REVSLRDKNRFHHIVGGTCSCGDYW 586



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 96/318 (30%), Positives = 144/318 (45%), Gaps = 47/318 (14%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           +E Q++HA  +KT       + +RL+ LY       L  AR + D + +  ++V +  +I
Sbjct: 27  REGQRVHAHMIKTCYEPPVYLRTRLIVLY--NKCRCLGDARRVLDEMPER-NVVSWTAMI 83

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
             Y     + EAL LF ++L     P+ FT   V+         + G+QIH LV K  F 
Sbjct: 84  SGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFE 143

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
              FV SSL+ MYAK G+I   RRVFD + ++D+VS   +I GY + G  E A+ LF  +
Sbjct: 144 SHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRL 203

Query: 215 PDRDLFS---------------------------------------WTCLVDGFSKCGKV 235
               + S                                          L+D +SKCG +
Sbjct: 204 QREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSL 263

Query: 236 EIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIR-----DLITWNSMIAG 290
             +R IF  MP R ++SWNAM+ GY K G    A ELF  M+       D +T+ ++++G
Sbjct: 264 TYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSG 323

Query: 291 YELNGRFMEALELLETML 308
               G     LE+   M+
Sbjct: 324 CSHGGMEDRGLEIFYEMV 341



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 128/272 (47%), Gaps = 15/272 (5%)

Query: 31  SSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLY 90
           SS  +  +Q+H+L +KT+   H  + S LL +Y       +  AR +FD + +   +V  
Sbjct: 124 SSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKA--GKICEARRVFDGLPER-DVVSC 180

Query: 91  NLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFK 150
             +I  Y       EAL LF  L    +  +  T   V+   + L A+  G+Q+H  V +
Sbjct: 181 TAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLR 240

Query: 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
               F   + +SL+ MY+K G +   RR+FD+M ++ ++SWN ++ GY K G    A++L
Sbjct: 241 AKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVEL 300

Query: 211 FDEMPDR-----DLFSWTCLVDGFSKCGKVEIAREIFYRMPNR------NLVSWNAMING 259
           F  M +      D  ++  ++ G S  G  +   EIFY M N+       +  +  +++ 
Sbjct: 301 FKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDL 360

Query: 260 YMKAGDVDSACELFDDMEIRDLIT-WNSMIAG 290
           + +AG V+ A E    M        W S++  
Sbjct: 361 FGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGA 392



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 90/179 (50%), Gaps = 6/179 (3%)

Query: 316 DATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFR 375
           D+ L   +S  A    + +G+ +H++++K  +     L T LI +Y+KC  +  A  V  
Sbjct: 14  DSVLTECISQTA----IREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLD 69

Query: 376 AISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVND 435
            + ++ V  WTAMI G    G A++AL LF +M   G  P   TF  VL +C+ +     
Sbjct: 70  EMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQL 129

Query: 436 GRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG 494
           GR+  +++I     E  I     L+D+  + G + EA+   + +P R + V   +++SG
Sbjct: 130 GRQIHSLVIKT-SFESHIFVGSSLLDMYAKAGKICEARRVFDGLPER-DVVSCTAIISG 186


>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
 gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
          Length = 1122

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 230/658 (34%), Positives = 360/658 (54%), Gaps = 12/658 (1%)

Query: 40  LHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVF 99
           LH  ++K  L  H  + + LL  Y    +  L  AR +F   +     V YN ++     
Sbjct: 157 LHPFAIKFGLDTHVFVCNTLLDAYCKHGL--LAAARRVFLE-MHDKDAVTYNAMMMGCSK 213

Query: 100 NQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFV 159
                +AL LF  +    +   +FT   ++  AA +  +  G Q+H LV +     + FV
Sbjct: 214 EGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFV 273

Query: 160 LSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP---- 215
            +SL+  Y+K   +D  RR+FD M ++D VS+N +I  Y         ++LF EM     
Sbjct: 274 NNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGF 333

Query: 216 DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS----WNAMINGYMKAGDVDSACE 271
           DR +  +  ++        V I ++I  ++    L S     NA+I+ Y K G +D+A  
Sbjct: 334 DRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKS 393

Query: 272 LFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAV 331
            F +   +  I+W ++I GY  NG+  EAL+L   M    + P+ AT  S + A + LA+
Sbjct: 394 NFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAM 453

Query: 332 LNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVG 391
           +  GR +HSY++++G+      G++L+ MY+KCG ++ AL  F  + ++    W A+I  
Sbjct: 454 IGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISA 513

Query: 392 LGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP 451
              +G A  A+ +F  M   G  P ++TF+ VL ACSH GL ++  +YF++M + Y I P
Sbjct: 514 YAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISP 573

Query: 452 TIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNL 511
             EHY C++D L R G   + +  +  MP + + +IW S+L   R HGN+++   AA+ L
Sbjct: 574 WKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKL 633

Query: 512 IKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVG 571
             + P     YV+LSNIYA AGQW+  + V+++M+ RG RK+ G S +E +  ++ F   
Sbjct: 634 FGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASN 693

Query: 572 DKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGL 631
           D + P  DEI  +L  +  ++   G+ PD T  L  + D + K   L+ HSERLAIAF L
Sbjct: 694 DLTSPMIDEIKDELDRLYKEMDKQGYKPDITCALHMV-DHELKLESLKYHSERLAIAFAL 752

Query: 632 INVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           +N  + +PIRI+KNL  C DCH+V K++S I NR+IIVRD+ RFHHFK+G CSC D+W
Sbjct: 753 MNTPAGTPIRIMKNLTACLDCHAVIKMISKIVNRDIIVRDSRRFHHFKDGVCSCGDYW 810



 Score =  168 bits (426), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 123/450 (27%), Positives = 214/450 (47%), Gaps = 30/450 (6%)

Query: 84  HPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQ 143
           H +   + ++++ +    R+ +AL+LF  +L   ++PD  T+  V+              
Sbjct: 102 HRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPG-----CTVPS 156

Query: 144 IHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGE 203
           +H    K G     FV ++L+  Y K G +   RRVF  M DKD V++N ++ G  K+G 
Sbjct: 157 LHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGL 216

Query: 204 VEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIARE----IFYRMPNRNLVSWNA 255
              A++LF  M    +    F+++ ++   +    + +  +    +       N+   N+
Sbjct: 217 HTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNS 276

Query: 256 MINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETM----LIGD 311
           +++ Y K   +D    LFD+M  RD +++N +IA Y  N      L L   M        
Sbjct: 277 LLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQ 336

Query: 312 VLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESAL 371
           VLP      + LS    L  ++ G+ +H+ +V  G   + +LG  LI MYSKCG +++A 
Sbjct: 337 VLP----YATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAK 392

Query: 372 TVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAG 431
           + F   S+K    WTA+I G   +G   +AL LF+ M R G++P   TF  ++ A S   
Sbjct: 393 SNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLA 452

Query: 432 LVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSL 491
           ++  GR+  + +I   G + ++     LVD+  + G L+EA  T + MP R N + W ++
Sbjct: 453 MIGLGRQLHSYLIRS-GYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPER-NSISWNAV 510

Query: 492 LSGARNHGNKDIGEYAANNLIKVAPDTIGC 521
           +S   ++G        A N IK+    + C
Sbjct: 511 ISAYAHYGE-------AKNAIKMFEGMLHC 533



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/390 (22%), Positives = 168/390 (43%), Gaps = 45/390 (11%)

Query: 147 LVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEV 206
           L ++L  G     L SL+S     G +   R +FD M  K++ S N ++  Y   G++  
Sbjct: 42  LTYRLNLG-----LRSLLSS----GHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPA 92

Query: 207 AMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM------PNRNLVSW------- 253
           A  LF   P R+  +WT ++   +  G+   A  +F  M      P+R  V+        
Sbjct: 93  AQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGC 152

Query: 254 ---------------------NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYE 292
                                N +++ Y K G + +A  +F +M  +D +T+N+M+ G  
Sbjct: 153 TVPSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCS 212

Query: 293 LNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV 352
             G   +AL+L   M    +     T  S L+  AG+A L  G  +H+ ++++  V++  
Sbjct: 213 KEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVF 272

Query: 353 LGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG 412
           +   L+  YSKC  ++    +F  + ++    +  +I     +  A   L LF +M ++G
Sbjct: 273 VNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLG 332

Query: 413 MKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEA 472
                + +  +L+       V+ G++    ++   G+         L+D+  + G L+ A
Sbjct: 333 FDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVL-LGLASEDLLGNALIDMYSKCGMLDAA 391

Query: 473 KSTIESMPMRPNFVIWMSLLSGARNHGNKD 502
           KS   +   + + + W +L++G   +G  +
Sbjct: 392 KSNFSNRSEK-SAISWTALITGYVQNGQHE 420


>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
           mitochondrial [Vitis vinifera]
 gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 236/690 (34%), Positives = 373/690 (54%), Gaps = 15/690 (2%)

Query: 10  SPIHALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGI-SSRLLSLYVDPHI 68
           +P   +    P++   ++ +F+ T     QL+A  +  N ++ S +    +   Y+   +
Sbjct: 4   NPFPPISSRNPTKTLLSLFRFTKTLASNHQLNA-QILVNALHRSLLFGPMIFGAYI--QL 60

Query: 69  NNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCV 128
            +LH A   F+ I    +L  +N ++  +  N+  ++ L LF  +L    L D+F L   
Sbjct: 61  GSLHVASKAFNHI-TFENLHSWNTILASHSKNKCFYDVLQLFKRMLKEGKLVDSFNLVFA 119

Query: 129 IKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDL 188
           +K    L   +  K  H L  KL    D +V  +L+++Y + G ++   +VF+ +  K+ 
Sbjct: 120 VKACFGLSLFQGAKLFHSLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVFEEVPLKNS 179

Query: 189 VSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGF-SKCGKVEIARE------- 240
           V W  +I G++   E     +LF  M          +V+G    CG V   +E       
Sbjct: 180 VIWGVMIKGHLNFSEEFGVFELFSRMRRSGFELDPFVVEGLIQACGNVYAGKEGKTFHGL 239

Query: 241 -IFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFME 299
            I     + N     ++++ YMK G +D A +LF+++  RD++ W+++IAG+  NGR +E
Sbjct: 240 CIKKNFIDSNFFLQTSLVDMYMKCGFLDFALKLFEEISYRDVVVWSAIIAGFARNGRALE 299

Query: 300 ALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQ 359
           ++ +   ML   V PN  T  S + A + L  L +GR +H Y+++NG  +D    T  I 
Sbjct: 300 SISMFRQMLADSVTPNSVTFASIVLACSSLGSLKQGRSVHGYMIRNGVELDVKNYTSFID 359

Query: 360 MYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAIT 419
           MY+KCG I +A  VF  I +K V  W+ MI G GMHG+  +AL+LF +M  +   P ++T
Sbjct: 360 MYAKCGCIVTAYRVFCQIPEKNVFSWSTMINGFGMHGLCAEALNLFYEMRSVNQLPNSVT 419

Query: 420 FIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM 479
           F+ VL+ACSH+G + +G  +F  M  DYGI P  EHY C+VD+L R G ++EA S I +M
Sbjct: 420 FVSVLSACSHSGRIEEGWSHFKSMSRDYGITPVEEHYACMVDLLGRAGKIDEALSFINNM 479

Query: 480 PMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVS 539
           P  P    W +LL   R H   ++ E  A  L+ +  D  G YV+LSNIYA  G W+ V 
Sbjct: 480 PTEPGASAWGALLGACRIHRRAELAEEVAKKLLPLESDQSGVYVMLSNIYADVGMWEMVK 539

Query: 540 EVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVP 599
           + R  M ++G  K  G +SIE    L+ F   D+   +  +I S  + ++ +++  G+VP
Sbjct: 540 KTRLKMCEKGIHKIVGFTSIEIEEKLYLFSSEDRFAYKNTQIESLWNSLKERMRELGYVP 599

Query: 600 DTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLL 659
           D   VL  ++D+ ++E  L  HSE+LAI FGL+N     PIRI KN+RVC DCH+ +K +
Sbjct: 600 DLRFVLHDVDDEVKQEV-LCGHSEKLAIVFGLLNSGEGMPIRITKNMRVCGDCHTASKFI 658

Query: 660 SGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           S I  R+II+RD  RFHH ++G CSC D+W
Sbjct: 659 SLITRRKIIMRDVKRFHHVQDGVCSCGDYW 688


>gi|218188961|gb|EEC71388.1| hypothetical protein OsI_03510 [Oryza sativa Indica Group]
          Length = 706

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 202/441 (45%), Positives = 290/441 (65%), Gaps = 1/441 (0%)

Query: 249 NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETML 308
           ++V   AM+      G+ D+A ELFD M  RD + WN+MIAGY   GR  EAL L + M 
Sbjct: 267 DVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMR 326

Query: 309 IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIE 368
                  + TLVSAL+A A L  L +G+W+HS     G  +   LGT LI MYSKCG++ 
Sbjct: 327 HAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVA 386

Query: 369 SALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACS 428
           +A+ VF ++ ++ V  WT+ + GL M+GM    L LF +M   G++P  +TF+ VL  CS
Sbjct: 387 AAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCS 446

Query: 429 HAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIW 488
            AGLV++GR  F+ M +++GI+P +EHYGC+VD+  R G L++A + I  MP+ P+  +W
Sbjct: 447 MAGLVDEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVW 506

Query: 489 MSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548
            +LL+ +R H N ++G+YA + L+ +       +V+LSNIYA +  W  VS VR MMK +
Sbjct: 507 GALLNASRIHKNVELGKYAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSNVRNMMKAK 566

Query: 549 GFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCI 608
           G +K PG S+IE  G +HEF VG K+HP+  EI   L+EM  +L+  G++ +T +VL  I
Sbjct: 567 GVKKVPGCSAIEVGGKVHEFFVGGKTHPRHKEIEMMLAEMNQRLRLQGYIANTKEVLFDI 626

Query: 609 EDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREII 668
           E++ +KE  +  HSE+LAIAFGL+ +     IRIVKNLRVC DCH  TK++S ++NREI+
Sbjct: 627 EEE-DKEDAISLHSEKLAIAFGLVALPEDMEIRIVKNLRVCEDCHDYTKMISKVFNREIV 685

Query: 669 VRDNSRFHHFKNGSCSCKDFW 689
           +RD +RFHHFK+G+CSCKD+W
Sbjct: 686 MRDRNRFHHFKDGACSCKDYW 706



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 156/373 (41%), Gaps = 56/373 (15%)

Query: 73  YARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGA 132
           YAR +  R  +  +L+ +N L++     +R H A   F DL    L+PDN++   +++ A
Sbjct: 150 YARLLLPR--RPATLLAHNSLLRALARGRRPHLAFGAFRDLP---LVPDNYSFTFLVRAA 204

Query: 133 ARLGAIKEGK--------QIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD 184
             L A              +H    + G   D  V S  VSMYA  G++   R  F  + 
Sbjct: 205 TALAAAAASALDAALIAGSVHASALRHGHAGDPHVQSGAVSMYAAAGDVGAARAAFAEIA 264

Query: 185 DKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYR 244
             D+V    ++      GE + A +LFD MP RD  +W  ++ G+   G+   A  +F  
Sbjct: 265 SPDVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDE 324

Query: 245 MPNR-------NLVS---------------W-----------------NAMINGYMKAGD 265
           M +         LVS               W                  A+I+ Y K G 
Sbjct: 325 MRHAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGA 384

Query: 266 VDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSA 325
           V +A E+FD M  R++ TW S ++G  +NG   + L L + M    V PN  T V  L  
Sbjct: 385 VAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRG 444

Query: 326 VAGLAVLNKGRWMHSYIVKNGFVVDGVLG--TLLIQMYSKCGSIESALTVFRAIS-KKKV 382
            +   ++++GR     + K+   +D  L     ++ +Y + G ++ A+     +  +   
Sbjct: 445 CSMAGLVDEGRACFDSM-KSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHE 503

Query: 383 GHWTAMIVGLGMH 395
           G W A++    +H
Sbjct: 504 GVWGALLNASRIH 516


>gi|218546768|sp|Q8S9M4.2|PP198_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g41080
          Length = 650

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/601 (36%), Positives = 343/601 (57%), Gaps = 41/601 (6%)

Query: 129 IKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDL 188
           I+      ++  GKQ+H L+   GF  DKF+ + L+SMY+K G+      V+  M  K+ 
Sbjct: 51  IQSCTTRQSLPSGKQLHCLLVVSGFSSDKFICNHLMSMYSKLGDFPSAVAVYGRMRKKNY 110

Query: 189 VSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM--- 245
           +S N LI+GYV+ G++  A K+FDEMPDR L +W  ++ G  +    E    +F  M   
Sbjct: 111 MSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGL 170

Query: 246 ---PNR---------------------------------NLVSWNAMINGYMKAGDVDSA 269
              P+                                  +LV  +++ + YM+ G +   
Sbjct: 171 GFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDG 230

Query: 270 CELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGL 329
             +   M +R+L+ WN++I G   NG     L L + M I    PN  T V+ LS+ + L
Sbjct: 231 EIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDL 290

Query: 330 AVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMI 389
           A+  +G+ +H+  +K G      + + LI MYSKCG +  A   F     +    W++MI
Sbjct: 291 AIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMI 350

Query: 390 VGLGMHGMATQALDLFNKMC-RMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYG 448
              G HG   +A++LFN M  +  M+   + F+ +L ACSH+GL + G   F+MM+  YG
Sbjct: 351 SAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYG 410

Query: 449 IEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAA 508
            +P ++HY C+VD+L R G L++A++ I SMP++ + VIW +LLS    H N ++ +   
Sbjct: 411 FKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVF 470

Query: 509 NNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEF 568
             ++++ P+   CYV+L+N++A+A +W  VSEVR+ M+ +  +K+ G S  EH+G +H+F
Sbjct: 471 KEILQIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQF 530

Query: 569 VVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIA 628
            +GD+S  ++ EI+S L E+  ++K  G+ PDT  VL  + D++EKE++L  HSE+LA+A
Sbjct: 531 KMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDM-DEEEKESDLVQHSEKLAVA 589

Query: 629 FGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDF 688
           F L+ +   +PIRI+KNLRVC+DCH   K +S I NREI +RD SRFHHF NG CSC D+
Sbjct: 590 FALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFHHFINGKCSCGDY 649

Query: 689 W 689
           W
Sbjct: 650 W 650



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 95/360 (26%), Positives = 167/360 (46%), Gaps = 22/360 (6%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           AR +FD  +    L  +N +I   +  + + E L+LF ++      PD +TL  V  G+A
Sbjct: 129 ARKVFDE-MPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSA 187

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
            L ++  G+QIHG   K G   D  V SSL  MY + G++  G  V  +M  ++LV+WN 
Sbjct: 188 GLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNT 247

Query: 194 LIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKCGKV-------EIARE 240
           LI G  + G  E  + L+  M      P++  F     V   S C  +       +I  E
Sbjct: 248 LIMGNAQNGCPETVLYLYKMMKISGCRPNKITF-----VTVLSSCSDLAIRGQGQQIHAE 302

Query: 241 IFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEA 300
                 +  +   +++I+ Y K G +  A + F + E  D + W+SMI+ Y  +G+  EA
Sbjct: 303 AIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEA 362

Query: 301 LELLETMLIGDVLP-NDATLVSALSAVAGLAVLNKGRWMHSYIV-KNGFVVDGVLGTLLI 358
           +EL  TM     +  N+   ++ L A +   + +KG  +   +V K GF       T ++
Sbjct: 363 IELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVV 422

Query: 359 QMYSKCGSIESALTVFRAIS-KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA 417
            +  + G ++ A  + R++  K  +  W  ++    +H  A  A  +F ++ ++    +A
Sbjct: 423 DLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQIDPNDSA 482


>gi|222619165|gb|EEE55297.1| hypothetical protein OsJ_03249 [Oryza sativa Japonica Group]
          Length = 706

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 202/441 (45%), Positives = 290/441 (65%), Gaps = 1/441 (0%)

Query: 249 NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETML 308
           ++V   AM+      G+ D+A ELFD M  RD + WN+MIAGY   GR  EAL L + M 
Sbjct: 267 DVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMR 326

Query: 309 IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIE 368
                  + TLVSAL+A A L  L +G+W+HS     G  +   LGT LI MYSKCG++ 
Sbjct: 327 HAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVA 386

Query: 369 SALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACS 428
           +A+ VF ++ ++ V  WT+ + GL M+GM    L LF +M   G++P  +TF+ VL  CS
Sbjct: 387 AAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCS 446

Query: 429 HAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIW 488
            AGLV++GR  F+ M +++GI+P +EHYGC+VD+  R G L++A + I  MP+ P+  +W
Sbjct: 447 MAGLVDEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVW 506

Query: 489 MSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548
            +LL+ +R H N ++G+YA + L+ +       +V+LSNIYA +  W  VS VR MMK +
Sbjct: 507 GALLNASRIHKNVELGKYAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSNVRNMMKAK 566

Query: 549 GFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCI 608
           G +K PG S+IE  G +HEF VG K+HP+  EI   L+EM  +L+  G++ +T +VL  I
Sbjct: 567 GVKKVPGCSAIEVGGKVHEFFVGGKTHPRHKEIEMMLAEMNQRLRLQGYIANTKEVLFDI 626

Query: 609 EDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREII 668
           E++ +KE  +  HSE+LAIAFGL+ +     IRIVKNLRVC DCH  TK++S ++NREI+
Sbjct: 627 EEE-DKEDAISLHSEKLAIAFGLVALPEDMEIRIVKNLRVCEDCHDYTKMISKVFNREIV 685

Query: 669 VRDNSRFHHFKNGSCSCKDFW 689
           +RD +RFHHFK+G+CSCKD+W
Sbjct: 686 MRDRNRFHHFKDGACSCKDYW 706



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 155/373 (41%), Gaps = 56/373 (15%)

Query: 73  YARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGA 132
           YAR +  R  +  +L+ +N L++     +R H A   F DL    L PDN++   +++ A
Sbjct: 150 YARLLLPR--RPATLLAHNSLLRALARGRRPHLAFGAFRDLP---LAPDNYSFTFLVRAA 204

Query: 133 ARLGAIKEGK--------QIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD 184
             L A              +H    + G   D  V S  VSMYA  G++   R  F  + 
Sbjct: 205 TALAAAAASALDAALIAGSVHASALRHGHAGDPHVQSGAVSMYAAAGDVGAARAAFAEIA 264

Query: 185 DKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYR 244
             D+V    ++      GE + A +LFD MP RD  +W  ++ G+   G+   A  +F  
Sbjct: 265 SPDVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDE 324

Query: 245 MPNR-------NLVS---------------W-----------------NAMINGYMKAGD 265
           M +         LVS               W                  A+I+ Y K G 
Sbjct: 325 MRHAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGA 384

Query: 266 VDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSA 325
           V +A E+FD M  R++ TW S ++G  +NG   + L L + M    V PN  T V  L  
Sbjct: 385 VAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRG 444

Query: 326 VAGLAVLNKGRWMHSYIVKNGFVVDGVLG--TLLIQMYSKCGSIESALTVFRAIS-KKKV 382
            +   ++++GR     + K+   +D  L     ++ +Y + G ++ A+     +  +   
Sbjct: 445 CSMAGLVDEGRACFDSM-KSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHE 503

Query: 383 GHWTAMIVGLGMH 395
           G W A++    +H
Sbjct: 504 GVWGALLNASRIH 516


>gi|413937223|gb|AFW71774.1| hypothetical protein ZEAMMB73_242527 [Zea mays]
          Length = 625

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 218/503 (43%), Positives = 295/503 (58%), Gaps = 37/503 (7%)

Query: 192 NCLIDGYVKKGEVEVAMKLFDE--MPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRN 249
           NCL+  Y   G +  A ++FD       D FSW  +V G+ KCG +E ARE+F RMP R 
Sbjct: 155 NCLLKLYCALGMLSDARRVFDTSGATSLDAFSWNTMVSGYGKCGDLEAAREVFVRMPERG 214

Query: 250 LVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLI 309
           LVSW+AMI+  ++AG+                               F EAL + + M+ 
Sbjct: 215 LVSWSAMIDACIRAGE-------------------------------FSEALRMFDQMMG 243

Query: 310 GDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGF--VVDGV-LGTLLIQMYSKCGS 366
               P+   L S L A A L  L +GRW+H ++   G     D V L T L+ MY KCG 
Sbjct: 244 NGFRPDAVVLSSVLKACAHLGALERGRWVHRFLKAEGLGRSPDNVMLETALVDMYCKCGC 303

Query: 367 IESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNA 426
           ++ A  VF  +  + V  W AMI GL M+G   +AL+LF +M  MG  P   TF+ VL A
Sbjct: 304 MDEAWWVFDGVQSQDVVLWNAMIGGLAMNGHGKRALELFRRMLDMGFVPNESTFVVVLCA 363

Query: 427 CSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFV 486
           C+H G V++G+  F  M  D+GIEP  EHYGCL D+L R G LEEA++ +  MPM P+  
Sbjct: 364 CTHTGRVDEGKEIFRSMC-DHGIEPRREHYGCLADLLGRAGLLEEAEAVLLDMPMEPHAS 422

Query: 487 IWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMK 546
            W +L+S    H N  +GE     LI++ PD  G YVVL N+YA  G W+    +R+MM+
Sbjct: 423 QWGALMSSCLMHNNVGVGERVGKKLIELEPDDGGRYVVLFNLYAVNGLWEDAKALRKMME 482

Query: 547 KRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLL 606
           +RG +K+ G S IE  G++HEF  GD  HPQT +I++ L +M  +L+  G+V DT+QVL+
Sbjct: 483 ERGAKKETGLSFIEWNGLVHEFRSGDTRHPQTRQIYALLEDMEQRLQLIGYVKDTSQVLM 542

Query: 607 CIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNRE 666
            ++D+++K   L  HSERLA+AFG++N     PIRIVKNLRVC DCH   KL+S +Y RE
Sbjct: 543 DMDDEEDKGNTLSYHSERLALAFGILNTPRHMPIRIVKNLRVCRDCHVYAKLVSKLYQRE 602

Query: 667 IIVRDNSRFHHFKNGSCSCKDFW 689
           II+RD  RFH F+ G CSC DFW
Sbjct: 603 IIMRDRHRFHLFRGGVCSCNDFW 625



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 136/284 (47%), Gaps = 20/284 (7%)

Query: 127 CVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK 186
           C++K    LG + + +++           D F  +++VS Y K G+++  R VF  M ++
Sbjct: 156 CLLKLYCALGMLSDARRVFDT--SGATSLDAFSWNTMVSGYGKCGDLEAAREVFVRMPER 213

Query: 187 DLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKCGKVEIAR- 239
            LVSW+ +ID  ++ GE   A+++FD+M      PD  + S   ++   +  G +E  R 
Sbjct: 214 GLVSWSAMIDACIRAGEFSEALRMFDQMMGNGFRPDAVVLS--SVLKACAHLGALERGRW 271

Query: 240 -------EIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYE 292
                  E   R P+ N++   A+++ Y K G +D A  +FD ++ +D++ WN+MI G  
Sbjct: 272 VHRFLKAEGLGRSPD-NVMLETALVDMYCKCGCMDEAWWVFDGVQSQDVVLWNAMIGGLA 330

Query: 293 LNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV 352
           +NG    ALEL   ML    +PN++T V  L A      +++G+ +   +  +G      
Sbjct: 331 MNGHGKRALELFRRMLDMGFVPNESTFVVVLCACTHTGRVDEGKEIFRSMCDHGIEPRRE 390

Query: 353 LGTLLIQMYSKCGSIESALTVFRAIS-KKKVGHWTAMIVGLGMH 395
               L  +  + G +E A  V   +  +     W A++    MH
Sbjct: 391 HYGCLADLLGRAGLLEEAEAVLLDMPMEPHASQWGALMSSCLMH 434



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 91/184 (49%), Gaps = 8/184 (4%)

Query: 69  NNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCV 128
            +L  AR +F R+ +   LV ++ +I   +      EAL +F  ++     PD   L  V
Sbjct: 198 GDLEAAREVFVRMPER-GLVSWSAMIDACIRAGEFSEALRMFDQMMGNGFRPDAVVLSSV 256

Query: 129 IKGAARLGAIKEGKQIHGLVFKLGFGF--DKFVL-SSLVSMYAKFGEIDLGRRVFDAMDD 185
           +K  A LGA++ G+ +H  +   G G   D  +L ++LV MY K G +D    VFD +  
Sbjct: 257 LKACAHLGALERGRWVHRFLKAEGLGRSPDNVMLETALVDMYCKCGCMDEAWWVFDGVQS 316

Query: 186 KDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLF----SWTCLVDGFSKCGKVEIAREI 241
           +D+V WN +I G    G  + A++LF  M D        ++  ++   +  G+V+  +EI
Sbjct: 317 QDVVLWNAMIGGLAMNGHGKRALELFRRMLDMGFVPNESTFVVVLCACTHTGRVDEGKEI 376

Query: 242 FYRM 245
           F  M
Sbjct: 377 FRSM 380


>gi|302776474|ref|XP_002971398.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
 gi|300160530|gb|EFJ27147.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
          Length = 562

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 223/568 (39%), Positives = 326/568 (57%), Gaps = 22/568 (3%)

Query: 138 IKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDG 197
           ++EG++IH  +   GF       + LVSMYAK G +D  R +F+ + ++ +VSW+ +I  
Sbjct: 1   MEEGRRIHSRLSLCGFHRATIAQNGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGA 60

Query: 198 YVKKGEVEVAMKLFDEM-------PDRDLFSWTCLVDGFSKCGKVE---IAREIFY---- 243
           Y   G  + A+ LF  M       P+   F+       F+ CG +E     REI      
Sbjct: 61  YALHGRGQEALLLFHRMRNDGRVEPNAMTFTGV-----FNACGVIEDLEQGREIHALAMA 115

Query: 244 --RMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEAL 301
              + + N +  NA++N Y++ G ++ A ++FD M+  D  +W SMI     N   +EAL
Sbjct: 116 SGELKSSNAILENALLNMYVRCGSLEEARKVFDTMDHPDAFSWTSMITACTENCELLEAL 175

Query: 302 ELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMY 361
           EL   M +  + P   TL S L+A A    L  G+ +HS +  +GF    +  T L+ MY
Sbjct: 176 ELFHRMNLEGIPPTSVTLASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMY 235

Query: 362 SKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFI 421
           +KCGS+E +  VF A+  +    WTAMI  L  HG   +AL+LF +M   GM   A TFI
Sbjct: 236 AKCGSLECSSKVFTAMETRNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADATTFI 295

Query: 422 GVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPM 481
            VL ACSHAGL+ +   +F+ M+ DY I PT  HY   +D + R G L++A+  I SMP 
Sbjct: 296 CVLRACSHAGLIKESLEFFHSMVEDYAIAPTETHYCRALDTIGRAGRLQDAEELIHSMPF 355

Query: 482 RPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEV 541
            P  + W +LL+  R H   +     A  L K+AP+    Y +L N+YAA G++     V
Sbjct: 356 HPETLTWKTLLNACRIHSQAERATKVAELLSKLAPEDSMAYTLLGNVYAATGRYGDQMRV 415

Query: 542 REMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDT 601
           R+ M  RG +K PG S IE +  +HEFV GD++HP  DEI  +L ++  +++ AG+VP+T
Sbjct: 416 RKGMTDRGLKKVPGKSFIEVKNKVHEFVAGDRAHPSRDEILLELEKLGGRMREAGYVPNT 475

Query: 602 TQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSG 661
             VL  + +++EKE  +  HSE+LAIAFGLI     +P+ IVKNLRVC+DCH+ TK+++ 
Sbjct: 476 KDVLHAV-NEEEKEQLIGLHSEKLAIAFGLIATPPGTPLLIVKNLRVCSDCHAATKVIAK 534

Query: 662 IYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           I  R I+VRD  RFHHF++G CSCKD+W
Sbjct: 535 IMRRRIVVRDTHRFHHFEDGQCSCKDYW 562



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 161/344 (46%), Gaps = 24/344 (6%)

Query: 35  KETQQLHALSVKTNLIYHSG--ISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNL 92
           ++ +++HAL++ +  +  S   + + LL++YV     +L  AR +FD  + HP    +  
Sbjct: 104 EQGREIHALAMASGELKSSNAILENALLNMYV--RCGSLEEARKVFD-TMDHPDAFSWTS 160

Query: 93  LIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLG 152
           +I     N    EAL LF  +    + P + TL  V+   A  GA+K GKQIH  +   G
Sbjct: 161 MITACTENCELLEALELFHRMNLEGIPPTSVTLASVLNACACSGALKVGKQIHSRLDASG 220

Query: 153 FGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFD 212
           F       ++L+ MYAK G ++   +VF AM+ ++ VSW  +I    + G+ + A++LF 
Sbjct: 221 FHSSVLAQTALLDMYAKCGSLECSSKVFTAMETRNSVSWTAMIAALAQHGQGDEALELFK 280

Query: 213 EMPDR----DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS-----WNAMINGYMKA 263
           EM       D  ++ C++   S  G ++ + E F+ M     ++     +   ++   +A
Sbjct: 281 EMNLEGMVADATTFICVLRACSHAGLIKESLEFFHSMVEDYAIAPTETHYCRALDTIGRA 340

Query: 264 GDVDSACELFDDMEIR-DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSA 322
           G +  A EL   M    + +TW +++    ++ +   A ++ E  L+  + P D+   + 
Sbjct: 341 GRLQDAEELIHSMPFHPETLTWKTLLNACRIHSQAERATKVAE--LLSKLAPEDSMAYTL 398

Query: 323 LSAVAGLAVLNKGRWMHSYIVKNGFVVDG---VLGTLLIQMYSK 363
           L  V        GR+     V+ G    G   V G   I++ +K
Sbjct: 399 LGNVYAAT----GRYGDQMRVRKGMTDRGLKKVPGKSFIEVKNK 438


>gi|297597505|ref|NP_001044065.2| Os01g0715700 [Oryza sativa Japonica Group]
 gi|255673627|dbj|BAF05979.2| Os01g0715700 [Oryza sativa Japonica Group]
          Length = 699

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 202/441 (45%), Positives = 290/441 (65%), Gaps = 1/441 (0%)

Query: 249 NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETML 308
           ++V   AM+      G+ D+A ELFD M  RD + WN+MIAGY   GR  EAL L + M 
Sbjct: 260 DVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMR 319

Query: 309 IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIE 368
                  + TLVSAL+A A L  L +G+W+HS     G  +   LGT LI MYSKCG++ 
Sbjct: 320 HAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVA 379

Query: 369 SALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACS 428
           +A+ VF ++ ++ V  WT+ + GL M+GM    L LF +M   G++P  +TF+ VL  CS
Sbjct: 380 AAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCS 439

Query: 429 HAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIW 488
            AGLV++GR  F+ M +++GI+P +EHYGC+VD+  R G L++A + I  MP+ P+  +W
Sbjct: 440 MAGLVDEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVW 499

Query: 489 MSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548
            +LL+ +R H N ++G+YA + L+ +       +V+LSNIYA +  W  VS VR MMK +
Sbjct: 500 GALLNASRIHKNVELGKYAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSNVRNMMKAK 559

Query: 549 GFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCI 608
           G +K PG S+IE  G +HEF VG K+HP+  EI   L+EM  +L+  G++ +T +VL  I
Sbjct: 560 GVKKVPGCSAIEVGGKVHEFFVGGKTHPRHKEIEMMLAEMNQRLRLQGYIANTKEVLFDI 619

Query: 609 EDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREII 668
           E++ +KE  +  HSE+LAIAFGL+ +     IRIVKNLRVC DCH  TK++S ++NREI+
Sbjct: 620 EEE-DKEDAISLHSEKLAIAFGLVALPEDMEIRIVKNLRVCEDCHDYTKMISKVFNREIV 678

Query: 669 VRDNSRFHHFKNGSCSCKDFW 689
           +RD +RFHHFK+G+CSCKD+W
Sbjct: 679 MRDRNRFHHFKDGACSCKDYW 699



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 155/373 (41%), Gaps = 56/373 (15%)

Query: 73  YARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGA 132
           YAR +  R  +  +L+ +N L++     +R H A   F DL    L PDN++   +++ A
Sbjct: 143 YARLLLPR--RPATLLAHNSLLRALARGRRPHLAFGAFRDLP---LAPDNYSFTFLVRAA 197

Query: 133 ARLGAIKEGK--------QIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD 184
             L A              +H    + G   D  V S  VSMYA  G++   R  F  + 
Sbjct: 198 TALAAAAASALDAALIAGSVHASALRHGHAGDPHVQSGAVSMYAAAGDVGAARAAFAEIA 257

Query: 185 DKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYR 244
             D+V    ++      GE + A +LFD MP RD  +W  ++ G+   G+   A  +F  
Sbjct: 258 SPDVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDE 317

Query: 245 MPNR-------NLVS---------------W-----------------NAMINGYMKAGD 265
           M +         LVS               W                  A+I+ Y K G 
Sbjct: 318 MRHAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGA 377

Query: 266 VDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSA 325
           V +A E+FD M  R++ TW S ++G  +NG   + L L + M    V PN  T V  L  
Sbjct: 378 VAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRG 437

Query: 326 VAGLAVLNKGRWMHSYIVKNGFVVDGVLG--TLLIQMYSKCGSIESALTVFRAIS-KKKV 382
            +   ++++GR     + K+   +D  L     ++ +Y + G ++ A+     +  +   
Sbjct: 438 CSMAGLVDEGRACFDSM-KSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHE 496

Query: 383 GHWTAMIVGLGMH 395
           G W A++    +H
Sbjct: 497 GVWGALLNASRIH 509


>gi|62318827|dbj|BAD93880.1| hypothetical protein [Arabidopsis thaliana]
 gi|62318835|dbj|BAD93890.1| hypothetical protein [Arabidopsis thaliana]
          Length = 635

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 236/655 (36%), Positives = 364/655 (55%), Gaps = 38/655 (5%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINN-LHYARSIFDRILQHPSLVLYNLLIKCY 97
           Q+H L +K  +   S  + +L+ L+    I++ L YAR +       P   ++N L++ Y
Sbjct: 15  QIHGLFIKYGVDTDSYFTGKLI-LHCAISISDALPYARRLL-LCFPEPDAFMFNTLVRGY 72

Query: 98  VFNQRSHEALTLFCDLLDR-FLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFD 156
             +   H ++ +F +++ + F+ PD+F+   VIK      +++ G Q+H    K G    
Sbjct: 73  SESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQMHCQALKHGLESH 132

Query: 157 KFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD 216
            FV ++L+ MY   G                     C          VE A K+FDEM  
Sbjct: 133 LFVGTTLIGMYGGCG---------------------C----------VEFARKVFDEMHQ 161

Query: 217 RDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDM 276
            +L +W  ++    +   V  AREIF +M  RN  SWN M+ GY+KAG+++SA  +F +M
Sbjct: 162 PNLVAWNAVITACFRGNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEM 221

Query: 277 EIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGR 336
             RD ++W++MI G   NG F E+      +    + PN+ +L   LSA +       G+
Sbjct: 222 PHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGK 281

Query: 337 WMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKK-VGHWTAMIVGLGMH 395
            +H ++ K G+     +   LI MYS+CG++  A  VF  + +K+ +  WT+MI GL MH
Sbjct: 282 ILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMH 341

Query: 396 GMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEH 455
           G   +A+ LFN+M   G+ P  I+FI +L+ACSHAGL+ +G  YF+ M   Y IEP IEH
Sbjct: 342 GQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEH 401

Query: 456 YGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVA 515
           YGC+VD+  R+G L++A   I  MP+ P  ++W +LL    +HGN ++ E     L ++ 
Sbjct: 402 YGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELD 461

Query: 516 PDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSH 575
           P+  G  V+LSN YA AG+W  V+ +R+ M  +  +K    S +E    +++F  G+K  
Sbjct: 462 PNNSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAGEKKK 521

Query: 576 PQTDEIHSKLSEMRNKLK-AAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINV 634
               E H KL E+  +LK  AG+ P+    L  +E++ EKE ++  HSE+LA+AF L  +
Sbjct: 522 GIDIEAHEKLKEIILRLKDEAGYTPEVASALYDVEEE-EKEDQVSKHSEKLALAFALARL 580

Query: 635 KSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
              + IRIVKNLR+C DCH+V KL S +Y  EI+VRD +RFH FK+GSCSC+D+W
Sbjct: 581 SKGANIRIVKNLRICRDCHAVMKLTSKVYGVEILVRDRNRFHSFKDGSCSCRDYW 635



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 81/354 (22%), Positives = 159/354 (44%), Gaps = 26/354 (7%)

Query: 16  QQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGIS-SRLLSLYVDPHINNLHYA 74
           + H P+ + WN +  ++  +      A  +   ++  +  S + +L+ Y+      L  A
Sbjct: 158 EMHQPNLVAWNAV-ITACFRGNDVAGAREIFDKMLVRNHTSWNVMLAGYIKA--GELESA 214

Query: 75  RSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAAR 134
           + IF   + H   V ++ +I     N   +E+   F +L    + P+  +L  V+   ++
Sbjct: 215 KRIFSE-MPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQ 273

Query: 135 LGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD-LVSWNC 193
            G+ + GK +HG V K G+ +   V ++L+ MY++ G + + R VF+ M +K  +VSW  
Sbjct: 274 SGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTS 333

Query: 194 LIDGYVKKGEVEVAMKLFDEMP----DRDLFSWTCLVDGFSKCGKVEIAREIFYRMP--- 246
           +I G    G+ E A++LF+EM       D  S+  L+   S  G +E   + F  M    
Sbjct: 334 MIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVY 393

Query: 247 --NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDL-ITWNSMIAGYELNGRFMEALEL 303
                +  +  M++ Y ++G +  A +    M I    I W +++     +G     +EL
Sbjct: 394 HIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGN----IEL 449

Query: 304 LETM--LIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGT 355
            E +   + ++ PN++  +  LS     A    G+W     ++   +V  +  T
Sbjct: 450 AEQVKQRLNELDPNNSGDLVLLSNAYATA----GKWKDVASIRKSMIVQRIKKT 499


>gi|359486281|ref|XP_003633424.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g45350, chloroplastic-like [Vitis vinifera]
          Length = 704

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 235/598 (39%), Positives = 341/598 (57%), Gaps = 41/598 (6%)

Query: 56  SSRLLSLYVDPHINNLHYARSIF------DRILQHPSLVLYNLLIKCYVFNQRSHEALTL 109
           +S  L+     H   + +AR +F       +  +  +  ++N +IK +   +   E   +
Sbjct: 44  NSPFLNFSSSSHKPLVEFARYLFMSRHFGRKYRKQDNSFIWNAIIKSFSHKEDPREVFVI 103

Query: 110 FCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAK 169
           F  +L+  +  D F+   V+K  +RLG IKEG QIHGL+ K+  G D F+ + L+ +Y +
Sbjct: 104 FNLMLESGVCVDKFSFSLVLKACSRLGLIKEGMQIHGLLGKMEIGSDVFLQNCLMCLYLR 163

Query: 170 FGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEV------------------------- 204
            G + + R++FD M  KD VS+N +IDGYVK G V                         
Sbjct: 164 CGCLGIVRQLFDRMMKKDSVSFNSMIDGYVKHGMVKSAWELFDVMPMEQKILISWNSMIS 223

Query: 205 ---------EVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNA 255
                    +VA +LF+EMP +DL SW  +++G  KCGK+E    +F RMP R +VS   
Sbjct: 224 EYARSEERLKVAWELFEEMPKKDLISWNSMINGCVKCGKMENDHHLFNRMPKRXVVSXAN 283

Query: 256 MINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPN 315
           M+NG+ K G++D A  LF +M   D+I+ N+M+A Y  NG  ME+L+    ML  ++  +
Sbjct: 284 MVNGHAKLGEIDIARGLFVEMPEMDVISCNAMMARYVQNGYLMESLKNFHDMLSKELFLD 343

Query: 316 DATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFR 375
           +ATL+  LSA+A L   ++G  +H YI  NGF +   LG  LI  Y+KCGSI++AL+VF 
Sbjct: 344 NATLLITLSAIAQLGHFDEGVALHCYIEDNGFSLSEKLGVALIDTYAKCGSIDNALSVFE 403

Query: 376 AISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVND 435
            I  K + HW A++ GL +HG+   A +LF +M ++ +KP  ITFIGVLNAC+HAGLV +
Sbjct: 404 DIDNKSIDHWNAILSGLAIHGLGEVAFELFMEMEKLFVKPNDITFIGVLNACNHAGLVKE 463

Query: 436 GRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGA 495
           G   F +M     +EP ++HY C+VDIL + G++EE K  +E M + PN V+W +LLS  
Sbjct: 464 GLMCFELMKRVDKVEPKLQHYVCMVDILGQAGHVEETKKFVEKMSIEPNDVVWRTLLSAC 523

Query: 496 RNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPG 555
           RNH N  IGE  A +LI V    +  YV+LSNIYA  G W+ V  +R MMK+R  +K PG
Sbjct: 524 RNHENFTIGEPVAKHLISVDSYNLSSYVLLSNIYAGFGIWNDVHRIRMMMKQRDLKKIPG 583

Query: 556 SSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKE 613
            S IE  G +H+F V DKSHPQ      K  E+  + +  G   D +Q L  I+D  E
Sbjct: 584 CSQIELEGNVHKFFVRDKSHPQAKTGREKELEVALQ-RLRGENTDISQELAEIKDYTE 640


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/541 (40%), Positives = 326/541 (60%), Gaps = 39/541 (7%)

Query: 187 DLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM- 245
           DL +WN L++ YVK   +  A KLFDEMP+R+  S+  L+ G+++  +   A E+F R+ 
Sbjct: 72  DLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLH 131

Query: 246 ----PNR---------------------------------NLVSWNAMINGYMKAGDVDS 268
               PN+                                 ++   NA+++ Y K G +++
Sbjct: 132 REVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMEN 191

Query: 269 ACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAG 328
           + ELF +   R+ +TWN++I G+   G   +AL L   ML   V   + T  SAL A A 
Sbjct: 192 SMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACAS 251

Query: 329 LAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAM 388
           LA L  G  +HS  VK  F  D V+   LI MY+KCGSI+ A  VF  ++K+    W AM
Sbjct: 252 LAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAM 311

Query: 389 IVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYG 448
           I G  MHG+  +AL +F+KM    +KP  +TF+GVL+AC++AGL++ G+ YF  MI D+G
Sbjct: 312 ISGYSMHGLGREALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHG 371

Query: 449 IEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAA 508
           IEP IEHY C+V +L R G+L++A   I+ +P +P+ ++W +LL     H + ++G  +A
Sbjct: 372 IEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISA 431

Query: 509 NNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEF 568
             ++++ P     +V+LSN+YA A +WD V+ VR+ MK++G +K+PG S IE +G +H F
Sbjct: 432 QRVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSF 491

Query: 569 VVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIA 628
            VGD SHP+   I+  L  +  K K AG++P+   VLL +ED+ EKE  L  HSERLA++
Sbjct: 492 TVGDTSHPEVRVINGMLEWLHMKTKKAGYIPNYNVVLLDVEDE-EKERLLWVHSERLALS 550

Query: 629 FGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDF 688
           FG+I   S SPIRI+KNLR+C DCH+  K +S +  REI+VRD +RFHHF+ G CSC D+
Sbjct: 551 FGIIRTPSGSPIRIMKNLRICVDCHAAIKCISKVVQREIVVRDINRFHHFQEGLCSCGDY 610

Query: 689 W 689
           W
Sbjct: 611 W 611



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 106/408 (25%), Positives = 175/408 (42%), Gaps = 107/408 (26%)

Query: 59  LLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFL 118
           LL++YV      L  A  +FD + +  ++    L I+ Y  + R  EA+ LF  L  R +
Sbjct: 79  LLNMYVKSDF--LCDASKLFDEMPERNTISFVTL-IQGYAESVRFLEAIELFVRL-HREV 134

Query: 119 LPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRR 178
           LP+ FT   V++  A +  +  G QIH  V K+G   D FV ++L+ +YAK G ++    
Sbjct: 135 LPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSME 194

Query: 179 VFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------------------------ 214
           +F     ++ V+WN +I G+V+ G+ E A++LF  M                        
Sbjct: 195 LFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAA 254

Query: 215 --P-------------DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMING 259
             P             D+D+     L+D ++KCG ++ AR +F  M  ++ VSWNAMI+G
Sbjct: 255 LEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISG 314

Query: 260 YMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATL 319
                                          Y ++G   EAL + + M   +V P+  T 
Sbjct: 315 -------------------------------YSMHGLGREALRIFDKMQETEVKPDKLTF 343

Query: 320 VSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK 379
           V  LSA A   +L++G+   +Y             T +IQ +     IE           
Sbjct: 344 VGVLSACANAGLLDQGQ---AYF------------TSMIQDHGIEPCIE----------- 377

Query: 380 KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNAC 427
               H+T M+  LG  G   +A+ L ++   +  +P+ + +  +L AC
Sbjct: 378 ----HYTCMVWLLGRGGHLDKAVKLIDE---IPFQPSVMVWRALLGAC 418



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 123/262 (46%), Gaps = 13/262 (4%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYV 98
           Q+H   +K  L     +S+ L+ +Y       +  +  +F     H + V +N +I  +V
Sbjct: 159 QIHCHVIKIGLHSDVFVSNALMDVYAK--CGRMENSMELFAES-PHRNDVTWNTVIVGHV 215

Query: 99  FNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKF 158
                 +AL LF ++L+  +     T    ++  A L A++ G QIH L  K  F  D  
Sbjct: 216 QLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIV 275

Query: 159 VLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR- 217
           V ++L+ MYAK G I   R VFD M+ +D VSWN +I GY   G    A+++FD+M +  
Sbjct: 276 VTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGLGREALRIFDKMQETE 335

Query: 218 ---DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS-----WNAMINGYMKAGDVDSA 269
              D  ++  ++   +  G ++  +  F  M   + +      +  M+    + G +D A
Sbjct: 336 VKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKA 395

Query: 270 CELFDDMEIR-DLITWNSMIAG 290
            +L D++  +  ++ W +++  
Sbjct: 396 VKLIDEIPFQPSVMVWRALLGA 417



 Score = 52.4 bits (124), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 49/225 (21%), Positives = 98/225 (43%), Gaps = 7/225 (3%)

Query: 281 LITWNSMIAGYELNGRFMEALELLETMLIGDVLP---NDATLVSALSAVAGLAVLNKGRW 337
           ++  N+ +  +   G  +++ +L +   +G V P   N     +AL         ++G+ 
Sbjct: 1   MVCRNNFLIQFSRRGFSVQSAKLTQE-FVGHVSPSEFNSHAYANALQDCIQKDEPSRGKG 59

Query: 338 MHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGM 397
           +H  I+K G  +D     +L+ MY K   +  A  +F  + ++    +  +I G      
Sbjct: 60  LHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVR 119

Query: 398 ATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYG 457
             +A++LF ++ R  + P   TF  VL AC+    +N G +    +I   G+   +    
Sbjct: 120 FLEAIELFVRLHREVL-PNQFTFASVLQACATMEGLNLGNQIHCHVIK-IGLHSDVFVSN 177

Query: 458 CLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKD 502
            L+D+  + G +E +       P R N V W +++ G    G+ +
Sbjct: 178 ALMDVYAKCGRMENSMELFAESPHR-NDVTWNTVIVGHVQLGDGE 221


>gi|414880007|tpg|DAA57138.1| TPA: hypothetical protein ZEAMMB73_430226 [Zea mays]
          Length = 648

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 226/526 (42%), Positives = 315/526 (59%), Gaps = 19/526 (3%)

Query: 177 RRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM-----PDRDLFSWTCLVDGFSK 231
           R +FD + D     +N LI      G    A+ ++  M     P  + F+   L      
Sbjct: 129 RNLFDQIPDPTAFCYNSLIRALPAAGSAP-ALAVYRRMLRAGSPRPNSFT---LAFALKA 184

Query: 232 CGKVEI---AREIFYRMPNRNLVS----WNAMINGYMKAGDVDSACELFDDME-IRDLIT 283
           C  V      R++  +   + L +       ++N Y K   V  A  +FD M   ++L+ 
Sbjct: 185 CAAVPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVA 244

Query: 284 WNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIV 343
           W++M++GY   G   EAL L   M    V P++ T+VS +SA A    L+ G+W+H+YI 
Sbjct: 245 WSAMVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYID 304

Query: 344 KNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALD 403
           + G  VD  L T LI MY+KCG IE A  VF A+ +K    W+AMIVG  +HG+   AL 
Sbjct: 305 RKGITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALG 364

Query: 404 LFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDIL 463
           LF++M  + ++P  +TFIGVL+AC+H+GLV DGRRY+++M N  GI+P++E+YGC+VD+L
Sbjct: 365 LFSRMLELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIMQN-LGIKPSMENYGCMVDLL 423

Query: 464 CRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYV 523
           CR+G L++A S +  MP+ PN VIW +LL   ++    DI E A   L+++ P     YV
Sbjct: 424 CRSGLLDDAYSFVIGMPVSPNSVIWRTLLVACKSSNRIDIAESATKRLLELEPHNPENYV 483

Query: 524 VLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHS 583
           +LSN+YA+  QWD+VS +R  MK +      G SSIE  G LHEFVV D SHP+  EI  
Sbjct: 484 LLSNLYASNSQWDRVSYLRRKMKGKNVTAIAGRSSIEINGHLHEFVVSDDSHPEIREIRL 543

Query: 584 KLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIV 643
            L EM ++++ AGH P T  VL  +  ++EKEA L  HSERLAIA+GL+  ++   IR+V
Sbjct: 544 VLREMADRVRRAGHKPWTAAVLHDV-GEEEKEAALCQHSERLAIAYGLLKTRAPHVIRVV 602

Query: 644 KNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           KNLR C DCH V K++S  YNREI+VRD  RFH F  GSCSCKDFW
Sbjct: 603 KNLRFCLDCHEVAKIISKAYNREIVVRDRVRFHKFMGGSCSCKDFW 648



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/272 (30%), Positives = 143/272 (52%), Gaps = 12/272 (4%)

Query: 75  RSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDR-FLLPDNFTLPCVIKGAA 133
           R++FD+I   P+   YN LI+  +    S  AL ++  +L      P++FTL   +K  A
Sbjct: 129 RNLFDQI-PDPTAFCYNSLIRA-LPAAGSAPALAVYRRMLRAGSPRPNSFTLAFALKACA 186

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAM-DDKDLVSWN 192
            + A  EG+Q+H    + G     +V + L+++YAK  ++ L R VFD M  DK+LV+W+
Sbjct: 187 AVPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWS 246

Query: 193 CLIDGYVKKGEVEVAMKLFDEMP----DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR 248
            ++ GY + G V  A+ LF EM     + D  +   ++   +K G +++ + +   +  +
Sbjct: 247 AMVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRK 306

Query: 249 ----NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELL 304
               +L    A+I+ Y K G ++ A  +FD M  +D   W++MI G+ ++G   +AL L 
Sbjct: 307 GITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLF 366

Query: 305 ETMLIGDVLPNDATLVSALSAVAGLAVLNKGR 336
             ML   V PN+ T +  LSA A   ++  GR
Sbjct: 367 SRMLELKVRPNNVTFIGVLSACAHSGLVEDGR 398



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 136/271 (50%), Gaps = 11/271 (4%)

Query: 36  ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIK 95
           E +QLHA +++  L   + + + LL+LY       +  AR++FD +    +LV ++ ++ 
Sbjct: 193 EGRQLHAQALRQGLATSAYVQTGLLNLYAK--CEQVALARTVFDGMAGDKNLVAWSAMVS 250

Query: 96  CYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF 155
            Y      +EAL LF ++    + PD  T+  VI   A+ GA+  GK +H  + + G   
Sbjct: 251 GYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRKGITV 310

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP 215
           D  + ++L+ MYAK G I+  R VFDAM +KD  +W+ +I G+   G VE A+ LF  M 
Sbjct: 311 DLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRML 370

Query: 216 DRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPN----RNLVSWNAMINGYMKAGDVD 267
           +  +     ++  ++   +  G VE  R  +  M N     ++ ++  M++   ++G +D
Sbjct: 371 ELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIMQNLGIKPSMENYGCMVDLLCRSGLLD 430

Query: 268 SACELFDDMEIR-DLITWNSMIAGYELNGRF 297
            A      M +  + + W +++   + + R 
Sbjct: 431 DAYSFVIGMPVSPNSVIWRTLLVACKSSNRI 461


>gi|293335745|ref|NP_001168519.1| uncharacterized protein LOC100382299 [Zea mays]
 gi|223948835|gb|ACN28501.1| unknown [Zea mays]
          Length = 599

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 226/526 (42%), Positives = 315/526 (59%), Gaps = 19/526 (3%)

Query: 177 RRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM-----PDRDLFSWTCLVDGFSK 231
           R +FD + D     +N LI      G    A+ ++  M     P  + F+   L      
Sbjct: 80  RNLFDQIPDPTAFCYNSLIRALPAAGSAP-ALAVYRRMLRAGSPRPNSFT---LAFALKA 135

Query: 232 CGKVEI---AREIFYRMPNRNLVS----WNAMINGYMKAGDVDSACELFDDME-IRDLIT 283
           C  V      R++  +   + L +       ++N Y K   V  A  +FD M   ++L+ 
Sbjct: 136 CAAVPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVA 195

Query: 284 WNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIV 343
           W++M++GY   G   EAL L   M    V P++ T+VS +SA A    L+ G+W+H+YI 
Sbjct: 196 WSAMVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYID 255

Query: 344 KNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALD 403
           + G  VD  L T LI MY+KCG IE A  VF A+ +K    W+AMIVG  +HG+   AL 
Sbjct: 256 RKGITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALG 315

Query: 404 LFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDIL 463
           LF++M  + ++P  +TFIGVL+AC+H+GLV DGRRY+++M N  GI+P++E+YGC+VD+L
Sbjct: 316 LFSRMLELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIMQN-LGIKPSMENYGCMVDLL 374

Query: 464 CRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYV 523
           CR+G L++A S +  MP+ PN VIW +LL   ++    DI E A   L+++ P     YV
Sbjct: 375 CRSGLLDDAYSFVIGMPVSPNSVIWRTLLVACKSSNRIDIAESATKRLLELEPHNPENYV 434

Query: 524 VLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHS 583
           +LSN+YA+  QWD+VS +R  MK +      G SSIE  G LHEFVV D SHP+  EI  
Sbjct: 435 LLSNLYASNSQWDRVSYLRRKMKGKNVTAIAGRSSIEINGHLHEFVVSDDSHPEIREIRL 494

Query: 584 KLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIV 643
            L EM ++++ AGH P T  VL  +  ++EKEA L  HSERLAIA+GL+  ++   IR+V
Sbjct: 495 VLREMADRVRRAGHKPWTAAVLHDV-GEEEKEAALCQHSERLAIAYGLLKTRAPHVIRVV 553

Query: 644 KNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           KNLR C DCH V K++S  YNREI+VRD  RFH F  GSCSCKDFW
Sbjct: 554 KNLRFCLDCHEVAKIISKAYNREIVVRDRVRFHKFMGGSCSCKDFW 599



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/272 (30%), Positives = 143/272 (52%), Gaps = 12/272 (4%)

Query: 75  RSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDR-FLLPDNFTLPCVIKGAA 133
           R++FD+I   P+   YN LI+  +    S  AL ++  +L      P++FTL   +K  A
Sbjct: 80  RNLFDQI-PDPTAFCYNSLIRA-LPAAGSAPALAVYRRMLRAGSPRPNSFTLAFALKACA 137

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAM-DDKDLVSWN 192
            + A  EG+Q+H    + G     +V + L+++YAK  ++ L R VFD M  DK+LV+W+
Sbjct: 138 AVPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWS 197

Query: 193 CLIDGYVKKGEVEVAMKLFDEMP----DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR 248
            ++ GY + G V  A+ LF EM     + D  +   ++   +K G +++ + +   +  +
Sbjct: 198 AMVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRK 257

Query: 249 ----NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELL 304
               +L    A+I+ Y K G ++ A  +FD M  +D   W++MI G+ ++G   +AL L 
Sbjct: 258 GITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLF 317

Query: 305 ETMLIGDVLPNDATLVSALSAVAGLAVLNKGR 336
             ML   V PN+ T +  LSA A   ++  GR
Sbjct: 318 SRMLELKVRPNNVTFIGVLSACAHSGLVEDGR 349



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 136/271 (50%), Gaps = 11/271 (4%)

Query: 36  ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIK 95
           E +QLHA +++  L   + + + LL+LY       +  AR++FD +    +LV ++ ++ 
Sbjct: 144 EGRQLHAQALRQGLATSAYVQTGLLNLYAK--CEQVALARTVFDGMAGDKNLVAWSAMVS 201

Query: 96  CYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF 155
            Y      +EAL LF ++    + PD  T+  VI   A+ GA+  GK +H  + + G   
Sbjct: 202 GYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRKGITV 261

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP 215
           D  + ++L+ MYAK G I+  R VFDAM +KD  +W+ +I G+   G VE A+ LF  M 
Sbjct: 262 DLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRML 321

Query: 216 DRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPN----RNLVSWNAMINGYMKAGDVD 267
           +  +     ++  ++   +  G VE  R  +  M N     ++ ++  M++   ++G +D
Sbjct: 322 ELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIMQNLGIKPSMENYGCMVDLLCRSGLLD 381

Query: 268 SACELFDDMEIR-DLITWNSMIAGYELNGRF 297
            A      M +  + + W +++   + + R 
Sbjct: 382 DAYSFVIGMPVSPNSVIWRTLLVACKSSNRI 412


>gi|15221306|ref|NP_177601.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169836|sp|Q9CA54.1|PP122_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74630
 gi|12324801|gb|AAG52363.1|AC011765_15 hypothetical protein; 86841-88772 [Arabidopsis thaliana]
 gi|332197495|gb|AEE35616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 643

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 234/654 (35%), Positives = 360/654 (55%), Gaps = 36/654 (5%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYV 98
           Q+H L +K  +   S  + +L+        + L YAR +       P   ++N L++ Y 
Sbjct: 23  QIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLL-LCFPEPDAFMFNTLVRGYS 81

Query: 99  FNQRSHEALTLFCDLLDR-FLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
            +   H ++ +F +++ + F+ PD+F+   VIK      +++ G Q+H    K G     
Sbjct: 82  ESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQMHCQALKHGLESHL 141

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
           FV ++L+ MY   G                     C          VE A K+FDEM   
Sbjct: 142 FVGTTLIGMYGGCG---------------------C----------VEFARKVFDEMHQP 170

Query: 218 DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDME 277
           +L +W  ++    +   V  AREIF +M  RN  SWN M+ GY+KAG+++SA  +F +M 
Sbjct: 171 NLVAWNAVITACFRGNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMP 230

Query: 278 IRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRW 337
            RD ++W++MI G   NG F E+      +    + PN+ +L   LSA +       G+ 
Sbjct: 231 HRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKI 290

Query: 338 MHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKK-VGHWTAMIVGLGMHG 396
           +H ++ K G+     +   LI MYS+CG++  A  VF  + +K+ +  WT+MI GL MHG
Sbjct: 291 LHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHG 350

Query: 397 MATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHY 456
              +A+ LFN+M   G+ P  I+FI +L+ACSHAGL+ +G  YF+ M   Y IEP IEHY
Sbjct: 351 QGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHY 410

Query: 457 GCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAP 516
           GC+VD+  R+G L++A   I  MP+ P  ++W +LL    +HGN ++ E     L ++ P
Sbjct: 411 GCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDP 470

Query: 517 DTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHP 576
           +  G  V+LSN YA AG+W  V+ +R+ M  +  +K    S +E    +++F  G+K   
Sbjct: 471 NNSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAGEKKKG 530

Query: 577 QTDEIHSKLSEMRNKLK-AAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVK 635
              E H KL E+  +LK  AG+ P+    L  +E++ EKE ++  HSE+LA+AF L  + 
Sbjct: 531 IDIEAHEKLKEIILRLKDEAGYTPEVASALYDVEEE-EKEDQVSKHSEKLALAFALARLS 589

Query: 636 SRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
             + IRIVKNLR+C DCH+V KL S +Y  EI+VRD +RFH FK+GSCSC+D+W
Sbjct: 590 KGANIRIVKNLRICRDCHAVMKLTSKVYGVEILVRDRNRFHSFKDGSCSCRDYW 643



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 81/354 (22%), Positives = 159/354 (44%), Gaps = 26/354 (7%)

Query: 16  QQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGIS-SRLLSLYVDPHINNLHYA 74
           + H P+ + WN +  ++  +      A  +   ++  +  S + +L+ Y+      L  A
Sbjct: 166 EMHQPNLVAWNAV-ITACFRGNDVAGAREIFDKMLVRNHTSWNVMLAGYIKA--GELESA 222

Query: 75  RSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAAR 134
           + IF   + H   V ++ +I     N   +E+   F +L    + P+  +L  V+   ++
Sbjct: 223 KRIFSE-MPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQ 281

Query: 135 LGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD-LVSWNC 193
            G+ + GK +HG V K G+ +   V ++L+ MY++ G + + R VF+ M +K  +VSW  
Sbjct: 282 SGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTS 341

Query: 194 LIDGYVKKGEVEVAMKLFDEMP----DRDLFSWTCLVDGFSKCGKVEIAREIFYRMP--- 246
           +I G    G+ E A++LF+EM       D  S+  L+   S  G +E   + F  M    
Sbjct: 342 MIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVY 401

Query: 247 --NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDL-ITWNSMIAGYELNGRFMEALEL 303
                +  +  M++ Y ++G +  A +    M I    I W +++     +G     +EL
Sbjct: 402 HIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGN----IEL 457

Query: 304 LETM--LIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGT 355
            E +   + ++ PN++  +  LS     A    G+W     ++   +V  +  T
Sbjct: 458 AEQVKQRLNELDPNNSGDLVLLSNAYATA----GKWKDVASIRKSMIVQRIKKT 507


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/565 (38%), Positives = 340/565 (60%), Gaps = 15/565 (2%)

Query: 137  AIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLID 196
            AI+EG+++H  + K  +    ++ + L+ +Y K   +   RRV D M ++++VSW  +I 
Sbjct: 492  AIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMIS 551

Query: 197  GYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNL 250
            GY ++G    A+ LF EM      P+   F++  ++   +     ++ R+I   +   + 
Sbjct: 552  GYSQRGYASEALHLFVEMLMSGTAPNE--FTFATVLTSCTSSSGFQLGRQIHSLVIKTSF 609

Query: 251  VS----WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLET 306
             S     +++++ Y KAG +  A  +FD +  RD+++  ++I+GY   G   EAL+L   
Sbjct: 610  ESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRR 669

Query: 307  MLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGS 366
            +    +  N  T  S L+A++GLA L+ GR +HS++++       VL   LI MYSKCGS
Sbjct: 670  LQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGS 729

Query: 367  IESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG-MKPTAITFIGVLN 425
            +  +  +F ++ ++ V  W AM+VG   HG+  +A++LF  M     +KP ++TF+ VL+
Sbjct: 730  LTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLS 789

Query: 426  ACSHAGLVNDGRRYFNMMINDY-GIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPN 484
             CSH G+ + G   F  M+N   G EP IEHYGC+VD+  R G +EEA   I+ MP  P 
Sbjct: 790  GCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPT 849

Query: 485  FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREM 544
              IW SLL   R H N  IGE+ A  L+++  +  G YV+LSN+YA+AG+WD V  VRE+
Sbjct: 850  AAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASAGRWDDVRTVREL 909

Query: 545  MKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQV 604
            MK++   K+PG S IE    LH F   D+SHP+ +E+ +K+ E+  K+K AG+VP+ + V
Sbjct: 910  MKEKAVIKEPGRSWIELDQTLHTFHASDRSHPRKEEVFAKVRELSIKIKEAGYVPELSCV 969

Query: 605  LLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYN 664
            L  ++D+ +KE  L+ HSE+LA+AFGLI     +P+RI+KNLR+C DCH+  K LS +Y 
Sbjct: 970  LYDVDDE-QKEKILQGHSEKLALAFGLICTPGGTPVRIIKNLRICVDCHNFAKFLSRVYG 1028

Query: 665  REIIVRDNSRFHHFKNGSCSCKDFW 689
            RE+ +RD +RFHH   G+CSC D+W
Sbjct: 1029 REVSLRDKNRFHHIVGGTCSCGDYW 1053



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 96/318 (30%), Positives = 144/318 (45%), Gaps = 47/318 (14%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           +E Q++HA  +KT       + +RL+ LY       L  AR + D + +  ++V +  +I
Sbjct: 494 REGQRVHAHMIKTCYEPPVYLRTRLIVLY--NKCRCLGDARRVLDEMPER-NVVSWTAMI 550

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
             Y     + EAL LF ++L     P+ FT   V+         + G+QIH LV K  F 
Sbjct: 551 SGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFE 610

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
              FV SSL+ MYAK G+I   RRVFD + ++D+VS   +I GY + G  E A+ LF  +
Sbjct: 611 SHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRL 670

Query: 215 PDRDLFS---------------------------------------WTCLVDGFSKCGKV 235
               + S                                          L+D +SKCG +
Sbjct: 671 QREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSL 730

Query: 236 EIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIR-----DLITWNSMIAG 290
             +R IF  MP R ++SWNAM+ GY K G    A ELF  M+       D +T+ ++++G
Sbjct: 731 TYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSG 790

Query: 291 YELNGRFMEALELLETML 308
               G     LE+   M+
Sbjct: 791 CSHGGMEDRGLEIFYEMV 808



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 128/272 (47%), Gaps = 15/272 (5%)

Query: 31  SSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLY 90
           SS  +  +Q+H+L +KT+   H  + S LL +Y       +  AR +FD + +   +V  
Sbjct: 591 SSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKA--GKICEARRVFDGLPER-DVVSC 647

Query: 91  NLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFK 150
             +I  Y       EAL LF  L    +  +  T   V+   + L A+  G+Q+H  V +
Sbjct: 648 TAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLR 707

Query: 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
               F   + +SL+ MY+K G +   RR+FD+M ++ ++SWN ++ GY K G    A++L
Sbjct: 708 AKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVEL 767

Query: 211 FDEMPDR-----DLFSWTCLVDGFSKCGKVEIAREIFYRMPNR------NLVSWNAMING 259
           F  M +      D  ++  ++ G S  G  +   EIFY M N+       +  +  +++ 
Sbjct: 768 FKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDL 827

Query: 260 YMKAGDVDSACELFDDMEIRDLIT-WNSMIAG 290
           + +AG V+ A E    M        W S++  
Sbjct: 828 FGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGA 859



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 90/179 (50%), Gaps = 6/179 (3%)

Query: 316 DATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFR 375
           D+ L   +S  A    + +G+ +H++++K  +     L T LI +Y+KC  +  A  V  
Sbjct: 481 DSVLTECISQTA----IREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLD 536

Query: 376 AISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVND 435
            + ++ V  WTAMI G    G A++AL LF +M   G  P   TF  VL +C+ +     
Sbjct: 537 EMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQL 596

Query: 436 GRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG 494
           GR+  +++I     E  I     L+D+  + G + EA+   + +P R + V   +++SG
Sbjct: 597 GRQIHSLVIKT-SFESHIFVGSSLLDMYAKAGKICEARRVFDGLPER-DVVSCTAIISG 653


>gi|345505230|gb|AEN99839.1| chlororespiratory reduction 4 [Nasturtium officinale]
          Length = 614

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 232/580 (40%), Positives = 332/580 (57%), Gaps = 47/580 (8%)

Query: 36  ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNL-HYARSIFDRI---------LQHP 85
           +  ++HA  + T  I +S ++++++  + D     L  +AR +F            ++ P
Sbjct: 28  DVGKIHARLITTGFIKNSNLTTKIVVAFADSRRPYLAEFARYVFREYHVCSFAPGDVKDP 87

Query: 86  SLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIH 145
              L+NL+IK +        AL  FC +L+  +  D F+   V+K  +RLG +K G QIH
Sbjct: 88  --FLWNLVIKSHSHGVDPRRALLWFCLMLENGISVDKFSFSLVLKACSRLGFLKGGMQIH 145

Query: 146 GLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVE 205
           G + K G   D F+ + L+ +Y K G +   R++FD M  +D VS+N +IDGY+K G +E
Sbjct: 146 GFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYIKCGLIE 205

Query: 206 ----------------------------------VAMKLFDEMPDRDLFSWTCLVDGFSK 231
                                             +A KLF EMP++DL SW  L+ G+ K
Sbjct: 206 SARELFDLMPREMKNLISWNSMISGYAQTSDGVNIASKLFAEMPEKDLISWNSLIYGYVK 265

Query: 232 CGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGY 291
            G++E A+++F+ MP R++V+W  MI+GY K G V  A  LFD M  RD++ +NSM+AGY
Sbjct: 266 HGRMEDAKDLFHVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHRDVVAYNSMMAGY 325

Query: 292 ELNGRFMEALELLETMLIGDVL-PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVD 350
             N   MEALE+   M     L P++ TLV  LSA+A L  L+K   MH YIV+  F + 
Sbjct: 326 VQNRHHMEALEIFSDMEKESHLTPDETTLVIVLSAIAQLGQLSKAMDMHLYIVEKQFYLG 385

Query: 351 GVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCR 410
           G LG  LI MYSKCGSI+ A+ VF  I  K + HW AMI GL +HG+   A ++  ++ R
Sbjct: 386 GKLGVALIDMYSKCGSIQQAMCVFEGIENKSIDHWNAMIGGLAIHGLGESAFNILLEIER 445

Query: 411 MGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLE 470
             ++P  ITF+GVLNACSH+GLV +G   F +M   + IEP ++HYGC+VD+L R G +E
Sbjct: 446 RSIEPDYITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDLLSRCGSIE 505

Query: 471 EAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYA 530
            AK+ IE MP+ PN VIW + L+   +H   +IGE  A +LI  A      YV+LSN+YA
Sbjct: 506 LAKNLIEEMPIEPNDVIWRTFLTACNHHKEFEIGELVAKHLILQAGYNPSSYVLLSNMYA 565

Query: 531 AAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVV 570
           + G+W  V  VR MMK+R  +K PG S IE  G +HEF V
Sbjct: 566 SFGRWKDVRNVRTMMKERKLQKVPGCSWIELDGRVHEFFV 605


>gi|218526158|sp|Q9M1V3.2|PP296_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g63370
          Length = 960

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 244/669 (36%), Positives = 384/669 (57%), Gaps = 17/669 (2%)

Query: 32  STHKETQQLHALSVKTNLIYHSG---ISSRLLSLYVDPHINNLHYARSIFDRILQHPSLV 88
           S  K  +++HA  +K++   HS    + + L+++Y       +  A  I  R + +  +V
Sbjct: 298 SYAKLGKEIHASVLKSST--HSSELYVCNALIAMYT--RCGKMPQAERIL-RQMNNADVV 352

Query: 89  LYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLV 148
            +N LIK YV N    EAL  F D++      D  ++  +I  + RL  +  G ++H  V
Sbjct: 353 TWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYV 412

Query: 149 FKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAM 208
            K G+  +  V ++L+ MY+K        R F  M DKDL+SW  +I GY +      A+
Sbjct: 413 IKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEAL 472

Query: 209 KLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNL---VSWNAMINGYM 261
           +LF ++  +    D      ++   S    + I +EI   +  + L   V  N +++ Y 
Sbjct: 473 ELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGLLDTVIQNELVDVYG 532

Query: 262 KAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVS 321
           K  ++  A  +F+ ++ +D+++W SMI+   LNG   EA+EL   M+   +  +   L+ 
Sbjct: 533 KCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLC 592

Query: 322 ALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKK 381
            LSA A L+ LNKGR +H Y+++ GF ++G +   ++ MY+ CG ++SA  VF  I +K 
Sbjct: 593 ILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKG 652

Query: 382 VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFN 441
           +  +T+MI   GMHG    A++LF+KM    + P  I+F+ +L ACSHAGL+++GR +  
Sbjct: 653 LLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGRGFLK 712

Query: 442 MMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNK 501
           +M ++Y +EP  EHY CLVD+L R   + EA   ++ M   P   +W +LL+  R+H  K
Sbjct: 713 IMEHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEVWCALLAACRSHSEK 772

Query: 502 DIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEH 561
           +IGE AA  L+++ P   G  V++SN++A  G+W+ V +VR  MK  G  K PG S IE 
Sbjct: 773 EIGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEM 832

Query: 562 RGVLHEFVVGDKSHPQTDEIHSKLSEMRNKL-KAAGHVPDTTQVLLCIEDQKEKEAELEN 620
            G +H+F   DKSHP++ EI+ KLSE+  KL +  G+V DT  VL  + D+ EK   L  
Sbjct: 833 DGKVHKFTARDKSHPESKEIYEKLSEVTRKLEREVGYVADTKFVLHNV-DEGEKVQMLHG 891

Query: 621 HSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKN 680
           HSER+AIA+GL+    R+ +RI KNLRVC DCH+  KL+S ++ R+I++RD +RFHHF++
Sbjct: 892 HSERIAIAYGLLRTPDRACLRITKNLRVCRDCHTFCKLVSKLFRRDIVMRDANRFHHFES 951

Query: 681 GSCSCKDFW 689
           G CSC D W
Sbjct: 952 GLCSCGDSW 960



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 129/477 (27%), Positives = 228/477 (47%), Gaps = 17/477 (3%)

Query: 36  ETQQLHALSVKTNLIYH-SGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           + +QLH+   KT   +    ++ +L+ +Y      +L  A  +FD +    +   +N +I
Sbjct: 98  QGRQLHSRIFKTFPSFELDFLAGKLVFMY--GKCGSLDDAEKVFDEMPDRTAFA-WNTMI 154

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
             YV N     AL L+ ++    +     + P ++K  A+L  I+ G ++H L+ KLG+ 
Sbjct: 155 GAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKLGYH 214

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK-DLVSWNCLIDGYVKKGEVEVAMKLFDE 213
              F++++LVSMYAK  ++   RR+FD   +K D V WN ++  Y   G+    ++LF E
Sbjct: 215 STGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFRE 274

Query: 214 M------PDR-DLFSWTCLVDGFS--KCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAG 264
           M      P+   + S     DGFS  K GK   A  +     +  L   NA+I  Y + G
Sbjct: 275 MHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCG 334

Query: 265 DVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS 324
            +  A  +   M   D++TWNS+I GY  N  + EALE    M+      ++ ++ S ++
Sbjct: 335 KMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIA 394

Query: 325 AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGH 384
           A   L+ L  G  +H+Y++K+G+  +  +G  LI MYSKC         F  +  K +  
Sbjct: 395 ASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLIS 454

Query: 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMI 444
           WT +I G   +    +AL+LF  + +  M+   +    +L A S    +   +     ++
Sbjct: 455 WTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHIL 514

Query: 445 NDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNK 501
               ++  I++   LVD+  +   +  A    ES+  + + V W S++S +  +GN+
Sbjct: 515 RKGLLDTVIQNE--LVDVYGKCRNMGYATRVFESIKGK-DVVSWTSMISSSALNGNE 568



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 89/310 (28%), Positives = 154/310 (49%), Gaps = 11/310 (3%)

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFD-KFVLSSLVSMYAKFGEIDLGRRVFDAMDDK 186
           V++   +  A+ +G+Q+H  +FK    F+  F+   LV MY K G +D   +VFD M D+
Sbjct: 86  VLELCGKRRAVSQGRQLHSRIFKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVFDEMPDR 145

Query: 187 DLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREIF 242
              +WN +I  YV  GE   A+ L+  M        L S+  L+   +K   +    E+ 
Sbjct: 146 TAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELH 205

Query: 243 YRMPNRNLVSW----NAMINGYMKAGDVDSACELFDDMEIR-DLITWNSMIAGYELNGRF 297
             +      S     NA+++ Y K  D+ +A  LFD  + + D + WNS+++ Y  +G+ 
Sbjct: 206 SLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKS 265

Query: 298 MEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNG-FVVDGVLGTL 356
           +E LEL   M +    PN  T+VSAL+A  G +    G+ +H+ ++K+     +  +   
Sbjct: 266 LETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNA 325

Query: 357 LIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT 416
           LI MY++CG +  A  + R ++   V  W ++I G   + M  +AL+ F+ M   G K  
Sbjct: 326 LIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSD 385

Query: 417 AITFIGVLNA 426
            ++   ++ A
Sbjct: 386 EVSMTSIIAA 395


>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 225/581 (38%), Positives = 339/581 (58%), Gaps = 39/581 (6%)

Query: 20  PSRLHW-NILKFSSTHKETQQLHALSVKT--NLIYHSGISSRLLSLYVDPHINNLHYARS 76
           P +L + + L+   + K  +Q+HA  +KT  +      IS+RL +L       +  YA S
Sbjct: 35  PHKLSFLSTLQTCKSIKGLKQIHASIIKTMPSPDAQLTISTRLSALCAQSLPIDPRYALS 94

Query: 77  IFDRILQHPSLVLYNLLIK-CYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARL 135
           +  + L+ P+L LYN +I+     N  S E L ++  +L + ++PDN+T+P V+K  A  
Sbjct: 95  LLAQ-LRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAES 153

Query: 136 GAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLI 195
            A++EG+++HG   K+G   D +V ++L+ MYA    I   R+VFD    +DLVSW  +I
Sbjct: 154 RAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMI 213

Query: 196 DGYVKKGEVEVAMKLF---DEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS 252
            GYVK G     + L+   +   + D+F    LVD + KCG    AR++F  MP +N+VS
Sbjct: 214 QGYVKMGFAREGVGLYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVS 273

Query: 253 WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDV 312
           WN+MI+G  +                                G+F E+L +   M    V
Sbjct: 274 WNSMISGLAQ-------------------------------KGQFKESLYMFRKMQRLGV 302

Query: 313 LPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALT 372
            P+D TLV+ L++ A L VL  G+W+H+Y+ +N    DG +G  L+ MY+KCGSI+ A  
Sbjct: 303 KPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACW 362

Query: 373 VFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGL 432
           VF+A+++K V  +TAMIVGL MHG   +ALDLF++M +MG++P  +TF+GVL ACSH GL
Sbjct: 363 VFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGL 422

Query: 433 VNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLL 492
           V +GR+YF  M   Y + P +EHYGC+VD+L R G + EA+  I +MP+ P+  +  +LL
Sbjct: 423 VEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGALL 482

Query: 493 SGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRK 552
              + HG  ++GE     + K+ P   G YV++SNIY++A +W    ++R+ MK+R   K
Sbjct: 483 GACKIHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKLRKTMKERNLEK 542

Query: 553 DPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLK 593
            PG SSIE  GV+HEF  GDKSHP+  EI+  L E+ + LK
Sbjct: 543 TPGCSSIELDGVIHEFQKGDKSHPKIKEIYKLLDEIMSHLK 583


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like
            [Vitis vinifera]
          Length = 1058

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 225/635 (35%), Positives = 359/635 (56%), Gaps = 34/635 (5%)

Query: 55   ISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL 114
            ++++   +     +  +  AR IFD IL +P++V +N +I  Y  N    EA     DL 
Sbjct: 458  VATKTAMMTAYAQVGRIQKARLIFDEIL-NPNVVAWNAIIAGYTQNGMLKEAK----DLF 512

Query: 115  DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEID 174
             +  + ++ +   +I G  +    +E  ++   + + G        +S +S  A  G+++
Sbjct: 513  QKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVE 572

Query: 175  LGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGK 234
            +GR +         +   C  + YV  G                      L+  ++KCG 
Sbjct: 573  IGRVIHSLA-----IKTGCQFNSYVMNG----------------------LISMYAKCGN 605

Query: 235  VEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELN 294
            VE    +F  +  ++ VSWN++I+G  +   +D A  +F+ M  RD+++W ++I+ Y   
Sbjct: 606  VEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQA 665

Query: 295  GRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLG 354
            G    AL+L   ML   + PN  T+ S LSA   L  +  G   H+ I K GF     +G
Sbjct: 666  GHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVG 725

Query: 355  TLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMK 414
              LI MY KCG  E    VF  + +  +  W A++VG   +G+  +A+ +F +M   G+ 
Sbjct: 726  NSLITMYFKCG-YEDGFCVFEEMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGIL 784

Query: 415  PTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKS 474
            P  ++F+GVL ACSHAGLV++G  +FN M   YGI P + HY C+VD+L R GYL EA++
Sbjct: 785  PDQMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLGRAGYLSEAEA 844

Query: 475  TIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQ 534
             IE+MP++P+ VIW +LL   R H N ++G+  A  L ++       YV+LSN++A+ G 
Sbjct: 845  LIENMPVKPDSVIWEALLGACRIHRNVELGQRVAERLFQMTKPKSATYVLLSNLFASQGM 904

Query: 535  WDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKA 594
            WDKV+E+R++MK +G  K+PG S I+ +  LH FV GD++H Q +EI+S L E     +A
Sbjct: 905  WDKVAEIRKLMKDQGLTKEPGISWIQVKNKLHCFVTGDRTHDQIEEIYSALKEYYGCFRA 964

Query: 595  AGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHS 654
             G++PDT  VL  +E++ +K+ EL  HSE+LA+ FG+++  + SPI+I+KNLR+C DCH+
Sbjct: 965  TGYMPDTNFVLHDVEEE-QKQNELLYHSEKLAVVFGILSTPNGSPIQIIKNLRICGDCHT 1023

Query: 655  VTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
              K +S +  R+II+RD +RFHHF++GSCSC D+W
Sbjct: 1024 FMKFMSKVTLRKIIIRDGNRFHHFRDGSCSCGDYW 1058



 Score =  202 bits (513), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 129/464 (27%), Positives = 226/464 (48%), Gaps = 35/464 (7%)

Query: 67  HINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLP 126
           H   +  AR +FD++ +  S V + ++I  YV      EA  +F  +      PD     
Sbjct: 307 HCYRMSEARELFDQMPERNS-VSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFV 365

Query: 127 CVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK 186
            V+     L  ++    +  +  K G+  D  V S++++ Y + G +DL    F+ M ++
Sbjct: 366 VVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPER 425

Query: 187 DLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMP 246
           +  SW  +I  + + G ++ A++L++ +P++ + + T ++  +++ G+++ AR IF  + 
Sbjct: 426 NEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTVATKTAMMTAYAQVGRIQKARLIFDEIL 485

Query: 247 NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLET 306
           N N+V+WNA+I GY + G +  A +LF  M +++  +W +MIAG+  N    EALELL  
Sbjct: 486 NPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIE 545

Query: 307 MLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGS 366
           +     +P+D++  SALSA A +  +  GR +HS  +K G   +  +   LI MY+KCG+
Sbjct: 546 LHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGN 605

Query: 367 IESALTVFRAI-------------------------------SKKKVGHWTAMIVGLGMH 395
           +E    VFR I                                K+ V  WTA+I      
Sbjct: 606 VEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQA 665

Query: 396 GMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEH 455
           G    ALDLF  M   G+KP  +T   +L+AC + G +  G + F+ +I   G +  +  
Sbjct: 666 GHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQ-FHALIFKLGFDTFLFV 724

Query: 456 YGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
              L+ +  + GY E+     E MP   + + W ++L G   +G
Sbjct: 725 GNSLITMYFKCGY-EDGFCVFEEMP-EHDLITWNAVLVGCAQNG 766



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 108/368 (29%), Positives = 191/368 (51%), Gaps = 41/368 (11%)

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
           F  ++ +    + G ++  RRVF+ M  +D+VSWN +I+GY + G+V+ A  LFD    +
Sbjct: 172 FQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGK 231

Query: 218 DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDME 277
           ++ +WT L+ G++K G++E ARE+F  M  RN+VSWNAMI+GY++ GD+ +A +LFD+M 
Sbjct: 232 NIRTWTILLTGYAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEMP 291

Query: 278 IRDLITWNSMIAGYELNGRFMEALELLETM----------LIG------------DVL-- 313
            +++ +WNS++ GY    R  EA EL + M          +I             DV   
Sbjct: 292 EKNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVK 351

Query: 314 -------PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGS 366
                  P+ +  V  LSA+ GL  L     +    +K G+  D V+G+ ++  Y++ GS
Sbjct: 352 MCRTVARPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGS 411

Query: 367 IESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNA 426
           ++ A+  F  + ++    WT MI      G    A+ L+ ++     + T  T   ++ A
Sbjct: 412 LDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVP----EQTVATKTAMMTA 467

Query: 427 CSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFV 486
            +  G +   R  F+ ++N     P +  +  ++    + G L+EAK   + MP++ N  
Sbjct: 468 YAQVGRIQKARLIFDEILN-----PNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVK-NSA 521

Query: 487 IWMSLLSG 494
            W ++++G
Sbjct: 522 SWAAMIAG 529



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 151/354 (42%), Gaps = 52/354 (14%)

Query: 188 LVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPN 247
           L   N  I    + G VE A ++F+EM  RD+ SW  +++G+S+ GKV+ AR +F     
Sbjct: 171 LFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVG 230

Query: 248 RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETM 307
           +N+ +W  ++ GY K G ++ A E+F+ M  R++++WN+MI+GY  NG    A +L + M
Sbjct: 231 KNIRTWTILLTGYAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEM 290

Query: 308 LIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSI 367
                   +  + S  S V G                                Y  C  +
Sbjct: 291 -------PEKNVASWNSVVTG--------------------------------YCHCYRM 311

Query: 368 ESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNAC 427
             A  +F  + ++    W  MI G        +A D+F KMCR   +P    F+ VL+A 
Sbjct: 312 SEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAI 371

Query: 428 S---HAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPN 484
           +      L+   R     +    G E  +     +++   R G L+ A    E+MP R  
Sbjct: 372 TGLDDLELIGSLRP----IAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNE 427

Query: 485 FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPD-TIGCYVVLSNIYAAAGQWDK 537
           +  W ++++     G  D     A  L +  P+ T+     +   YA  G+  K
Sbjct: 428 YS-WTTMIAAFAQCGRLD----DAIQLYERVPEQTVATKTAMMTAYAQVGRIQK 476



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 159/333 (47%), Gaps = 48/333 (14%)

Query: 40  LHALSVKTNLIYHSGISSRLLSLYVD-------PHINN---------------------- 70
           +H+L++KT   ++S + + L+S+Y          H+                        
Sbjct: 577 IHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYM 636

Query: 71  LHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIK 130
           L  AR +F+++ +   +V +  +I  YV       AL LF D+L R + P+  T+  ++ 
Sbjct: 637 LDDARVVFEKMPKR-DVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLS 695

Query: 131 GAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVS 190
               LGAIK G+Q H L+FKLGF    FV +SL++MY K G  D G  VF+ M + DL++
Sbjct: 696 ACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCGYED-GFCVFEEMPEHDLIT 754

Query: 191 WNCLIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKCGKVEIAREIFYR 244
           WN ++ G  + G  + A+K+F++M      PD+   S+  ++   S  G V+     F  
Sbjct: 755 WNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQ--MSFLGVLCACSHAGLVDEGWAHFNS 812

Query: 245 MPNRN-----LVSWNAMINGYMKAGDVDSACELFDDMEIR-DLITWNSMIAGYELNGRFM 298
           M  +      +  +  M++   +AG +  A  L ++M ++ D + W +++    ++ R +
Sbjct: 813 MTQKYGIMPLVYHYTCMVDLLGRAGYLSEAEALIENMPVKPDSVIWEALLGACRIH-RNV 871

Query: 299 EALELLETMLIGDVLPNDAT--LVSALSAVAGL 329
           E  + +   L     P  AT  L+S L A  G+
Sbjct: 872 ELGQRVAERLFQMTKPKSATYVLLSNLFASQGM 904


>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
 gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 224/556 (40%), Positives = 328/556 (58%), Gaps = 9/556 (1%)

Query: 142 KQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKK 201
           KQ+H  V   G   D  V + L+ M AK  ++     +F+ M+++D VSW+ +I G+VK 
Sbjct: 20  KQVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKMEERDPVSWSVMIGGFVKN 79

Query: 202 GEVEVAMKLFDEM----PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNL----VSW 253
           G+ E   + F E+       D FS   ++        + + R I   +    L       
Sbjct: 80  GDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLIHSTVLKNGLHLDNFVC 139

Query: 254 NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL 313
           + +++ Y K G +D+A +LFD M  +DL+T   MIAGY   G+  E+  L + M     +
Sbjct: 140 STLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAECGKPNESWVLFDQMRRDGFV 199

Query: 314 PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTV 373
           P+   +V+ ++A A L  +NK R +H Y+    + +D  LGT +I MY+KCGSI+S+  +
Sbjct: 200 PDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVELGTAMIDMYAKCGSIDSSREI 259

Query: 374 FRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLV 433
           F  + +K V  W+AMI   G HG   +AL+LF+ M   G+ P  ITFI +L ACSHAGLV
Sbjct: 260 FDRMEQKNVISWSAMIGAYGYHGQGREALELFHMMLNSGIIPNRITFISLLYACSHAGLV 319

Query: 434 NDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLS 493
           +DG + F++M   YG+ P ++HY C+VD+L R G L++A   IE+M +  +  IW + L 
Sbjct: 320 DDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQALRLIENMEVEKDEGIWCAFLG 379

Query: 494 GARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKD 553
             R H   D+ E AA  L+ +     G Y++LSNIYA AG+W  V+++R +M KR  +K 
Sbjct: 380 ACRIHRQVDLAEKAAKLLLSLQTQNPGHYILLSNIYANAGRWKDVAKIRNLMAKRRLKKI 439

Query: 554 PGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKE 613
           PG + IE   +++ F  GD SH +++EI+  L  +  KL++AG+VPDT  VL  + D++ 
Sbjct: 440 PGYTWIEVDNIIYRFGAGDNSHLRSNEIYEMLKSLSQKLESAGYVPDTNSVLHDV-DEEV 498

Query: 614 KEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNS 673
           K   L  HSE+LAIAFGLI     +PIRI KNLRVC DCHS  KL+S I  R+IIVRD +
Sbjct: 499 KLGILHAHSEKLAIAFGLIATPDGTPIRITKNLRVCGDCHSFCKLVSAITQRDIIVRDAN 558

Query: 674 RFHHFKNGSCSCKDFW 689
           RFHHFK G CSC D+W
Sbjct: 559 RFHHFKEGICSCGDYW 574



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 122/452 (26%), Positives = 202/452 (44%), Gaps = 82/452 (18%)

Query: 36  ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIK 95
           + +Q+HA    T +I+   ++++LL  Y+     +L  A  +F++ ++    V ++++I 
Sbjct: 18  QIKQVHAQVTTTGIIHDLIVANKLL--YMCAKHKDLVTAHLLFNK-MEERDPVSWSVMIG 74

Query: 96  CYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF 155
            +V N         F +L+     PDNF+LP VIK       +  G+ IH  V K G   
Sbjct: 75  GFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLIHSTVLKNGLHL 134

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM- 214
           D FV S+LV MYAK G ID  +++FD M  KDLV+   +I GY + G+   +  LFD+M 
Sbjct: 135 DNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAECGKPNESWVLFDQMR 194

Query: 215 -----PDR---------------------------------DLFSWTCLVDGFSKCGKVE 236
                PD+                                 D+   T ++D ++KCG ++
Sbjct: 195 RDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVELGTAMIDMYAKCGSID 254

Query: 237 IAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGR 296
            +REIF RM  +N++SW+AMI  Y                             GY   GR
Sbjct: 255 SSREIFDRMEQKNVISWSAMIGAY-----------------------------GYHGQGR 285

Query: 297 FMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYI-VKNGFVVDGVLGT 355
             EALEL   ML   ++PN  T +S L A +   +++ G  + S + V  G   D    T
Sbjct: 286 --EALELFHMMLNSGIIPNRITFISLLYACSHAGLVDDGLQLFSLMSVSYGVRPDVKHYT 343

Query: 356 LLIQMYSKCGSIESALTVFRAIS-KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMK 414
            ++ +  + G ++ AL +   +  +K  G W A +    +H    + +DL  K  ++ + 
Sbjct: 344 CMVDLLGRAGRLDQALRLIENMEVEKDEGIWCAFLGACRIH----RQVDLAEKAAKLLLS 399

Query: 415 PTAIT---FIGVLNACSHAGLVNDGRRYFNMM 443
                   +I + N  ++AG   D  +  N+M
Sbjct: 400 LQTQNPGHYILLSNIYANAGRWKDVAKIRNLM 431


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  417 bits (1072), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 226/668 (33%), Positives = 387/668 (57%), Gaps = 18/668 (2%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           +  + +H  + +  L     +S+ L+ +Y      +  +A ++F R+     +V +N ++
Sbjct: 146 RSARAVHCHAARAGLHADLFVSTALVDVYAK--CASFRHAATVFRRMPAR-DVVAWNAML 202

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
             Y  + +  + +     + D    P+  TL  ++   A+ GA+ +G+ +H    +    
Sbjct: 203 AGYALHGKYSDTIACLLLMQDDHA-PNASTLVALLPLLAQHGALSQGRAVHAYSVRACSL 261

Query: 155 FDK----FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
            D      V ++L+ MYAK G +    RVF+AM  ++ V+W+ L+ G+V  G +  A  L
Sbjct: 262 HDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGRMLEAFSL 321

Query: 211 FDEMPDRDL--FSWTCLVDGFSKCGKVE---IAREIFYRMP----NRNLVSWNAMINGYM 261
           F +M  + L   S T +      C  +    + +++   +     + +L + N++++ Y 
Sbjct: 322 FKDMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHALLAKSGLHTDLTAGNSLLSMYA 381

Query: 262 KAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVS 321
           KAG +D A  LFD M ++D ++++++++GY  NG+  EA  +   M   +V P+ AT+VS
Sbjct: 382 KAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQPDVATMVS 441

Query: 322 ALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKK 381
            + A + LA L  G+  H  ++  G   +  +   LI MY+KCG I+ +  +F  +  + 
Sbjct: 442 LIPACSHLAALQHGKCGHGSVIVRGIASETSICNALIDMYAKCGRIDLSRQIFDVMPARD 501

Query: 382 VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFN 441
           +  W  MI G G+HG+  +A  LF  M     +P  +TFI +++ACSH+GLV +G+R+F+
Sbjct: 502 IVSWNTMIAGYGIHGLGKEATALFLDMKHQACEPDDVTFICLISACSHSGLVTEGKRWFH 561

Query: 442 MMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNK 501
           MM + YGI P +EHY  +VD+L R G+L+EA   I+ MP++ +  +W +LL   R H N 
Sbjct: 562 MMAHKYGITPRMEHYIGMVDLLARGGFLDEAYQFIQGMPLKADVRVWGALLGACRVHKNI 621

Query: 502 DIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEH 561
           D+G+  ++ + ++ P+  G +V+LSNI++AAG++D+ +EVR + K++GF+K PG S IE 
Sbjct: 622 DLGKQVSSMIQQLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKEQGFKKSPGCSWIEI 681

Query: 562 RGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENH 621
            G LH F+ GD+SH Q+ EI+ +L  +   +   G+  DT+ VL  +E++++++A L  H
Sbjct: 682 NGSLHAFIGGDRSHAQSSEIYQELDNILVDINKLGYRADTSFVLQDVEEEEKEKALLY-H 740

Query: 622 SERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNG 681
           SE+LAIAFG++ +     I + KNLRVC DCH+V K ++ +  R IIVRD +RFHHFKNG
Sbjct: 741 SEKLAIAFGVLTLSEDKTIFVTKNLRVCGDCHTVIKYMTLVRKRAIIVRDANRFHHFKNG 800

Query: 682 SCSCKDFW 689
            CSC DFW
Sbjct: 801 QCSCGDFW 808



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 119/443 (26%), Positives = 212/443 (47%), Gaps = 15/443 (3%)

Query: 69  NNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCV 128
            +L  AR +FD+I   P +  YN LI+ Y     +            R   P+N+T P V
Sbjct: 77  GDLSLARHLFDQI-PAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFV 135

Query: 129 IKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDL 188
           +K  + L  ++  + +H    + G   D FV ++LV +YAK         VF  M  +D+
Sbjct: 136 LKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDV 195

Query: 189 VSWNCLIDGYVKKGEVEVAMKLFDEMPD---RDLFSWTCLVDGFSKCGKVEIAREIF-YR 244
           V+WN ++ GY   G+    +     M D    +  +   L+   ++ G +   R +  Y 
Sbjct: 196 VAWNAMLAGYALHGKYSDTIACLLLMQDDHAPNASTLVALLPLLAQHGALSQGRAVHAYS 255

Query: 245 MPNRNL-------VSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRF 297
           +   +L       +   A+++ Y K G +  A  +F+ M +R+ +TW++++ G+ L GR 
Sbjct: 256 VRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGRM 315

Query: 298 MEALELLETMLI-GDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTL 356
           +EA  L + ML  G    +  ++ SAL A A L+ L  G+ +H+ + K+G   D   G  
Sbjct: 316 LEAFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHALLAKSGLHTDLTAGNS 375

Query: 357 LIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT 416
           L+ MY+K G I+ A T+F  +  K    ++A++ G   +G A +A  +F KM    ++P 
Sbjct: 376 LLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQPD 435

Query: 417 AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTI 476
             T + ++ ACSH   +  G+     +I   GI         L+D+  + G ++ ++   
Sbjct: 436 VATMVSLIPACSHLAALQHGKCGHGSVIVR-GIASETSICNALIDMYAKCGRIDLSRQIF 494

Query: 477 ESMPMRPNFVIWMSLLSGARNHG 499
           + MP R + V W ++++G   HG
Sbjct: 495 DVMPAR-DIVSWNTMIAGYGIHG 516



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 105/246 (42%), Gaps = 23/246 (9%)

Query: 261 MKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLV 320
           M  GD+  A  LFD +    +  +N++I  Y L G  +               PN+ T  
Sbjct: 74  MICGDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFP 133

Query: 321 SALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKK 380
             L A + L  L   R +H +  + G   D  + T L+ +Y+KC S   A TVFR +  +
Sbjct: 134 FVLKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPAR 193

Query: 381 KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMK----PTAITFIGVLNACSHAGLVNDG 436
            V  W AM+ G  +HG  +  +      C + M+    P A T + +L   +  G ++ G
Sbjct: 194 DVVAWNAMLAGYALHGKYSDTI-----ACLLLMQDDHAPNASTLVALLPLLAQHGALSQG 248

Query: 437 RRYFNMMINDYGIEPTIEH--------YGCLVDILCRTGYLEEAKSTIESMPMRPNFVIW 488
           R      ++ Y +     H           L+D+  + G+L  A    E+M +R N V W
Sbjct: 249 R-----AVHAYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVR-NEVTW 302

Query: 489 MSLLSG 494
            +L+ G
Sbjct: 303 SALVGG 308


>gi|302753382|ref|XP_002960115.1| hypothetical protein SELMODRAFT_70183 [Selaginella moellendorffii]
 gi|300171054|gb|EFJ37654.1| hypothetical protein SELMODRAFT_70183 [Selaginella moellendorffii]
          Length = 653

 Score =  417 bits (1072), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 233/655 (35%), Positives = 368/655 (56%), Gaps = 41/655 (6%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           AR +FDRI Q  +   +++L++CYV N    EAL ++ +++   +  D +TL  V+    
Sbjct: 1   ARQVFDRIKQRNAFS-WSILVECYVQNAMYQEALEVYKEMVREEISIDAYTLSSVLAACT 59

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAM---------- 183
           +L  ++EG+ +     +LGF  D  V +SL+ ++AK G ++    VF +M          
Sbjct: 60  KLLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLEEAESVFRSMGAMRDIISVT 119

Query: 184 --------------------DDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM----PDRDL 219
                               D KD+VSWN +I  Y   G  + A  LF  M       D+
Sbjct: 120 AMIGAYCGSLKDSKSLFLTMDVKDVVSWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDI 179

Query: 220 FSWTCLVDGFSKCGKVEIAREIFYRMP----NRNLVSWNAMINGYMKAGDVDSACELFDD 275
           ++++ ++   +   ++E  R +  R+     +R+    N +I+ Y + G ++SA   F  
Sbjct: 180 YTFSSILGACASPKRLEDGRMLHVRITARGFDRDFAMQNNLISMYTRCGSLESARRYFYS 239

Query: 276 MEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKG 335
           +E ++L  WN+M+A Y    +  +AL L + ML+    P+  T  S + + A L  L +G
Sbjct: 240 IEKKELGAWNTMLAAYAQFDKGKDALFLYKNMLLEGFTPDRFTFSSVVDSCASLGALREG 299

Query: 336 RWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMH 395
           +++H      GF  D +LGT L+ MY+KCGS+  A   F  IS K V  W+AMI     H
Sbjct: 300 KFIHECSTSCGFEKDVILGTALVNMYAKCGSLADAKKSFDGISNKDVVSWSAMIAASAQH 359

Query: 396 GMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEH 455
           G A +AL+L + M   G+    +T   VL+ACSH G + +G  YF  +  D+GIE   E+
Sbjct: 360 GHAEEALELSHLMNLQGIAQNEVTASSVLHACSHGGRLYEGIDYFMGLSQDFGIERDEEN 419

Query: 456 YGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVA 515
               +D+L R G+L+EA+  + +MP + +FV  ++LL G + HG+   G+     ++ + 
Sbjct: 420 TVGFIDLLGRAGWLKEAEHVLHTMPFKVSFVALVTLLGGCKVHGDVRRGKAFTKRIVALE 479

Query: 516 PDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSH 575
           P+  G YV+L+N+YAAAG+WD V+++R  M+K+G ++  G SSIE+R  ++EF VGD S+
Sbjct: 480 PENPGSYVLLNNMYAAAGRWDDVAKLRRYMRKKGVKRQTGCSSIEYRDKIYEFSVGDTSN 539

Query: 576 PQTDEIHSKLSEMRNKLK-AAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINV 634
           P+  EI ++L  + +++K   G+VPDT  V   + D K KE  L+ HSE++A+ FGLI  
Sbjct: 540 PRNLEIRAELERLYSRMKEEEGYVPDTRDVFHDVSDDK-KEELLKFHSEKMAMGFGLITS 598

Query: 635 KSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
              S +RI+KNLRVC+DCH+V KL S I  R IIVRD +RFHHF+ G CSC D+W
Sbjct: 599 PPGSTLRIIKNLRVCSDCHTVGKLASKITGRRIIVRDGTRFHHFEGGICSCGDYW 653



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 140/282 (49%), Gaps = 13/282 (4%)

Query: 64  VDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNF 123
           +  +  +L  ++S+F   +    +V +N +I  Y       +A +LF  +      PD +
Sbjct: 122 IGAYCGSLKDSKSLF-LTMDVKDVVSWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIY 180

Query: 124 TLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAM 183
           T   ++   A    +++G+ +H  +   GF  D  + ++L+SMY + G ++  RR F ++
Sbjct: 181 TFSSILGACASPKRLEDGRMLHVRITARGFDRDFAMQNNLISMYTRCGSLESARRYFYSI 240

Query: 184 DDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKCGKVEI 237
           + K+L +WN ++  Y +  + + A+ L+  M      PDR  F+++ +VD  +  G +  
Sbjct: 241 EKKELGAWNTMLAAYAQFDKGKDALFLYKNMLLEGFTPDR--FTFSSVVDSCASLGALRE 298

Query: 238 AREIFYRMPN----RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYEL 293
            + I     +    ++++   A++N Y K G +  A + FD +  +D+++W++MIA    
Sbjct: 299 GKFIHECSTSCGFEKDVILGTALVNMYAKCGSLADAKKSFDGISNKDVVSWSAMIAASAQ 358

Query: 294 NGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKG 335
           +G   EALEL   M +  +  N+ T  S L A +    L +G
Sbjct: 359 HGHAEEALELSHLMNLQGIAQNEVTASSVLHACSHGGRLYEG 400



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 98/211 (46%), Gaps = 19/211 (9%)

Query: 5   TLQHSSPIHALQQHL-----PSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRL 59
           TL H+  I+     L     P RL           ++ + LH             + + L
Sbjct: 172 TLGHTPDIYTFSSILGACASPKRL-----------EDGRMLHVRITARGFDRDFAMQNNL 220

Query: 60  LSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLL 119
           +S+Y      +L  AR  F  I +   L  +N ++  Y    +  +AL L+ ++L     
Sbjct: 221 ISMYT--RCGSLESARRYFYSI-EKKELGAWNTMLAAYAQFDKGKDALFLYKNMLLEGFT 277

Query: 120 PDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRV 179
           PD FT   V+   A LGA++EGK IH      GF  D  + ++LV+MYAK G +   ++ 
Sbjct: 278 PDRFTFSSVVDSCASLGALREGKFIHECSTSCGFEKDVILGTALVNMYAKCGSLADAKKS 337

Query: 180 FDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
           FD + +KD+VSW+ +I    + G  E A++L
Sbjct: 338 FDGISNKDVVSWSAMIAASAQHGHAEEALEL 368


>gi|218202317|gb|EEC84744.1| hypothetical protein OsI_31741 [Oryza sativa Indica Group]
          Length = 563

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 213/467 (45%), Positives = 289/467 (61%), Gaps = 24/467 (5%)

Query: 225 LVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITW 284
           L+  ++ CG +  AR++F R    + V+WN+++ GY  AGDV++  E F  M+ RD ++W
Sbjct: 119 LIHAYAVCGSLLDARKVFDRGHEGDAVAWNSLLRGYAAAGDVNALREFFVGMQARDTVSW 178

Query: 285 NSMIAGYELNGRFMEALELLETMLIG-DVLPNDATLVSALSAVAGLAVLNKGRWMHSYIV 343
           N++IA    NG + EA+ +   ML   + LP+  TL                        
Sbjct: 179 NTIIAWCVENGEYEEAIAVFREMLASMECLPDRVTLFPG--------------------- 217

Query: 344 KNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAI-SKKKVGHWTAMIVGLGMHGMATQAL 402
             G  V+  L + LI MYSKC  IE A+ VF  + ++  V  W AM+ G   +G + +AL
Sbjct: 218 -KGIEVEERLSSALINMYSKCACIEGAVHVFENLGAQMNVDTWNAMLAGFTANGCSEKAL 276

Query: 403 DLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDI 462
           +LF +M   G+ P  ITF  VLNACSH G V +G   F  M   YGIEP I HYGC+VD+
Sbjct: 277 ELFARMEITGLVPNKITFNTVLNACSHGGFVEEGMGCFERMTKVYGIEPDIAHYGCMVDL 336

Query: 463 LCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCY 522
            CR G  ++A+  I+ MPM+P+  +W +L+   + H N ++G  A + LI+ AP+    Y
Sbjct: 337 FCRAGLFDKAEKMIQMMPMKPDAAVWKALVGACKTHRNFELGRKAGHMLIEAAPNDHAGY 396

Query: 523 VVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIH 582
           V+LSNIYA  G W  V +VR++M  RG +K PGSSSIE  GV+HEF+ GDKSH   ++I+
Sbjct: 397 VLLSNIYALDGNWTGVHKVRKLMLDRGVQKVPGSSSIEIDGVIHEFISGDKSHSSKEDIY 456

Query: 583 SKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRI 642
             LSEM  +LK AG+VPDT+ VLL I+D+  KE+ L  HSE+LAIAFGLI+    +PIRI
Sbjct: 457 EMLSEMCQQLKVAGYVPDTSHVLLDIDDEDVKESSLALHSEKLAIAFGLISTAPGTPIRI 516

Query: 643 VKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            KNLRVC DCH+  KLLS IY R IIVRD +RFHHF+ GSCSC DFW
Sbjct: 517 AKNLRVCGDCHNAVKLLSKIYGRCIIVRDANRFHHFREGSCSCGDFW 563



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 93/358 (25%), Positives = 150/358 (41%), Gaps = 52/358 (14%)

Query: 106 ALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVS 165
           AL LF  LL     PD+      +   AR    +   Q+H    K G    + V + L+ 
Sbjct: 62  ALRLFDHLLRSGADPDHVAYALALGRCARGRDHRAAAQLHSHAAKRGAASHRRVCNGLIH 121

Query: 166 MYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCL 225
            YA  G +   R+VFD   + D V+WN L+ GY   G+V    + F  M  RD  SW  +
Sbjct: 122 AYAVCGSLLDARKVFDRGHEGDAVAWNSLLRGYAAAGDVNALREFFVGMQARDTVSWNTI 181

Query: 226 VDGFSKCGKVEIAREIFYRM-------PNRNLVS-----------WNAMINGYMKAGDVD 267
           +    + G+ E A  +F  M       P+R  +             +A+IN Y K   ++
Sbjct: 182 IAWCVENGEYEEAIAVFREMLASMECLPDRVTLFPGKGIEVEERLSSALINMYSKCACIE 241

Query: 268 SACELFDDMEIR-DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326
            A  +F+++  + ++ TWN+M+AG+  NG   +ALEL   M I  ++PN  T  + L+A 
Sbjct: 242 GAVHVFENLGAQMNVDTWNAMLAGFTANGCSEKALELFARMEITGLVPNKITFNTVLNAC 301

Query: 327 AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWT 386
           +                  GFV +G+            G  E    V+    +  + H+ 
Sbjct: 302 S----------------HGGFVEEGM------------GCFERMTKVYGI--EPDIAHYG 331

Query: 387 AMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMI 444
            M+      G+  +A  +      M MKP A  +  ++ AC        GR+  +M+I
Sbjct: 332 CMVDLFCRAGLFDKAEKMIQM---MPMKPDAAVWKALVGACKTHRNFELGRKAGHMLI 386


>gi|449437638|ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 564

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 218/564 (38%), Positives = 336/564 (59%), Gaps = 20/564 (3%)

Query: 142 KQIHG--LVFKLGFGFDKFVLSSLVSMYA--KFGEIDLGRRVFDAMDDKDLVSWNCLIDG 197
           +Q+H   L   L      F LS +V+  A   FG I+  R VF  +   ++ SWN LI G
Sbjct: 5   RQLHAHILTRPLPLSSFAFALSKIVAFCALSPFGNINYARSVFAQIPHPNIFSWNSLIKG 64

Query: 198 Y-----VKKGEVEVAMKLFD---EMPDRDLFSWT----CLVDGFSKCGKVEIAREIFYRM 245
           Y     + K  + +  KL +    +P+    ++      +V  F +   +++   +    
Sbjct: 65  YSQIHTLSKEPIFLFKKLTETGYPVPNSFTLAFVLKACAIVTAFGE--GLQVHSHVLKDG 122

Query: 246 PNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLE 305
              +L    +++N Y K  ++  A ++F++M +R+L+ W +MI+G+   G   EA+EL  
Sbjct: 123 FGSSLFVQTSLVNFYGKCEEIGFARKVFEEMPVRNLVAWTAMISGHARVGAVDEAMELFR 182

Query: 306 TMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCG 365
            M    + P+  TLVS +SA A    L+ G W+H+YI K   + D  L T L+ MY+KCG
Sbjct: 183 EMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDMYAKCG 242

Query: 366 SIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN 425
            IE A  VF  +  K    W++MI+G   HG+A  A+D F +M    + P  +TF+ VL+
Sbjct: 243 CIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETEVTPDHVTFLAVLS 302

Query: 426 ACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNF 485
           AC+H GLV+ GRR++++M+ ++GIEP++EHYGC VD+LCR+G +EEA     +M + PN 
Sbjct: 303 ACAHGGLVSRGRRFWSLML-EFGIEPSVEHYGCKVDLLCRSGLVEEAYRITTTMKIPPNA 361

Query: 486 VIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMM 545
             W SLL G +     ++GE  A  L+++ P     Y+++SN+Y++  QW+K+SE+R++M
Sbjct: 362 ATWRSLLMGCKKKKLLNLGEIVARYLLELEPLNAENYIMISNLYSSLSQWEKMSELRKVM 421

Query: 546 KKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVL 605
           K++  +  PG SSIE  GV+HEFV+GD+SHP+   +   + EM  +++ +G+ P  + VL
Sbjct: 422 KEKCIKPVPGCSSIEVDGVVHEFVMGDQSHPEVKMLREFMEEMSMRVRDSGYRPSISDVL 481

Query: 606 LCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNR 665
             + D+ EKE  L  HSER AIA+GL+  ++   IR+VKNLRVC DCH V K++S +Y R
Sbjct: 482 HKVVDE-EKECALSEHSERFAIAYGLLKTRAPIVIRVVKNLRVCVDCHEVIKIISKLYER 540

Query: 666 EIIVRDNSRFHHFKNGSCSCKDFW 689
           EIIVRD  RFH F  G+CSCKDFW
Sbjct: 541 EIIVRDRVRFHKFIKGTCSCKDFW 564



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 114/401 (28%), Positives = 186/401 (46%), Gaps = 82/401 (20%)

Query: 38  QQLHA--LSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIK 95
           +QLHA  L+    L   +   S++++        N++YARS+F +I  HP++  +N LIK
Sbjct: 5   RQLHAHILTRPLPLSSFAFALSKIVAFCALSPFGNINYARSVFAQI-PHPNIFSWNSLIK 63

Query: 96  CYV-FNQRSHEALTLFCDLLDR-FLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGF 153
            Y   +  S E + LF  L +  + +P++FTL  V+K  A + A  EG Q+H  V K GF
Sbjct: 64  GYSQIHTLSKEPIFLFKKLTETGYPVPNSFTLAFVLKACAIVTAFGEGLQVHSHVLKDGF 123

Query: 154 GFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDE 213
           G   FV +SLV+ Y K  EI   R+VF+ M  ++LV+W  +I G+ + G V+ AM+LF E
Sbjct: 124 GSSLFVQTSLVNFYGKCEEIGFARKVFEEMPVRNLVAWTAMISGHARVGAVDEAMELFRE 183

Query: 214 M------PDR----------------DLFSW-----------------TCLVDGFSKCGK 234
           M      PD                 D+  W                 T LVD ++KCG 
Sbjct: 184 MQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDMYAKCGC 243

Query: 235 VEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELN 294
           +E A+++F  MP ++  +W++MI G+   G    A + F  M                  
Sbjct: 244 IERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQM------------------ 285

Query: 295 GRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLG 354
                    LET    +V P+  T ++ LSA A   ++++GR   S +++ G        
Sbjct: 286 ---------LET----EVTPDHVTFLAVLSACAHGGLVSRGRRFWSLMLEFGIEPSVEHY 332

Query: 355 TLLIQMYSKCGSIESALTVFRAISKKKV----GHWTAMIVG 391
              + +  + G +E A   +R  +  K+      W ++++G
Sbjct: 333 GCKVDLLCRSGLVEEA---YRITTTMKIPPNAATWRSLLMG 370


>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
          Length = 637

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 208/572 (36%), Positives = 338/572 (59%), Gaps = 14/572 (2%)

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD 187
           +I   AR  ++ + + IH  +    F    F+ +SL+ +Y K G +   RRVFD M  +D
Sbjct: 70  LITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARD 129

Query: 188 LVSWNCLIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKCGKVEIAREI 241
           + SW  LI GY +    + A+ L   M      P+   F++  L+          I  +I
Sbjct: 130 MCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNG--FTFASLLKAAGASASSGIGEQI 187

Query: 242 FYRMP----NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRF 297
                    + ++   +A+++ Y + G +D A  +FD +E ++ ++WN++IAG+   G  
Sbjct: 188 HALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDG 247

Query: 298 MEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLL 357
              L +   M          T  S  SA+AG+  L +G+W+H++++K+G  +   +G  +
Sbjct: 248 ETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTI 307

Query: 358 IQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA 417
           + MY+K GS+  A  VF  + KK V  W +M+     +G+  +A+  F +M + G+    
Sbjct: 308 LDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQ 367

Query: 418 ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIE 477
           ITF+ +L ACSH GLV +G++YF+MM  +Y +EP I+HY  +VD+L R G L +A   I 
Sbjct: 368 ITFLSILTACSHGGLVKEGKQYFDMM-KEYNLEPEIDHYVTVVDLLGRAGLLNDALVFIF 426

Query: 478 SMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDK 537
            MPM+P   +W +LL   R H N  IG++AA+++ ++ PD  G  V+L NIYA+ GQWD 
Sbjct: 427 KMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWDA 486

Query: 538 VSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGH 597
            + VR+MMK  G +K+P  S +E    +H FV  D +HP+++EI+ K  E+  +++ AG+
Sbjct: 487 AARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRKAGY 546

Query: 598 VPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTK 657
           VP+T  VLL + D++E++A+L+ HSE++A+AF LIN+   + IRI+KN+R+C DCHS  +
Sbjct: 547 VPNTDYVLLHV-DEQERQAKLQYHSEKIALAFALINMPLGATIRIMKNIRICGDCHSAFR 605

Query: 658 LLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            +S ++ REI+VRD +RFHHF +GSCSC D+W
Sbjct: 606 YISKVFKREIVVRDTNRFHHFSSGSCSCGDYW 637



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 158/331 (47%), Gaps = 10/331 (3%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           AR +FD +     +  +  LI  Y  N    EAL L   +L     P+ FT   ++K A 
Sbjct: 118 ARRVFDGMPAR-DMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAG 176

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
              +   G+QIH L  K  +  D +V S+L+ MYA+ G +D+   VFD ++ K+ VSWN 
Sbjct: 177 ASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNA 236

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRM--PN 247
           LI G+ +KG+ E  + +F EM         F+++ +    +  G +E  + +   M    
Sbjct: 237 LIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSG 296

Query: 248 RNLVSW--NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLE 305
             L ++  N +++ Y K+G +  A ++FD ++ +D++TWNSM+  +   G   EA+   E
Sbjct: 297 ERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFE 356

Query: 306 TMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCG 365
            M    V  N  T +S L+A +   ++ +G+     + +     +      ++ +  + G
Sbjct: 357 EMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMKEYNLEPEIDHYVTVVDLLGRAG 416

Query: 366 SIESALT-VFRAISKKKVGHWTAMIVGLGMH 395
            +  AL  +F+   K     W A++    MH
Sbjct: 417 LLNDALVFIFKMPMKPTAAVWGALLGSCRMH 447



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 83/182 (45%), Gaps = 2/182 (1%)

Query: 321 SALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKK 380
           S ++A A    L+  R +H+++  + F     L   LI +Y KCG++  A  VF  +  +
Sbjct: 69  SLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPAR 128

Query: 381 KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYF 440
            +  WT++I G   + M  +AL L   M R   KP   TF  +L A   +     G +  
Sbjct: 129 DMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIH 188

Query: 441 NMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGN 500
            + +  Y     +     L+D+  R G ++ A +  + +  + N V W +L++G    G+
Sbjct: 189 ALTVK-YDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESK-NGVSWNALIAGFARKGD 246

Query: 501 KD 502
            +
Sbjct: 247 GE 248


>gi|334184919|ref|NP_182060.2| chlororespiratory reduction 4 protein [Arabidopsis thaliana]
 gi|218546767|sp|O22137.2|PP202_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g45350, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 4; Flags: Precursor
 gi|330255448|gb|AEC10542.1| chlororespiratory reduction 4 protein [Arabidopsis thaliana]
          Length = 613

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 238/592 (40%), Positives = 340/592 (57%), Gaps = 51/592 (8%)

Query: 26  NILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVD---PHINNLHYARSIFDRI- 81
           ++L    T  +  Q+H   +KT +I +S +++R++  +     P++ +  +AR +F    
Sbjct: 17  HVLGSCKTSDDVNQIHGRLIKTGIIKNSNLTTRIVLAFASSRRPYLAD--FARCVFHEYH 74

Query: 82  --------LQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
                   ++ P   L+N +IK +   +   +AL L C +L+  +  D F+L  V+K  +
Sbjct: 75  VCSFSFGEVEDP--FLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACS 132

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
           RLG +K G QIHG + K G   D F+ + L+ +Y K G + L R++FD M  +D VS+N 
Sbjct: 133 RLGFVKGGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNS 192

Query: 194 LIDGYVKKG----------------------------------EVEVAMKLFDEMPDRDL 219
           +IDGYVK G                                   V++A KLF +MP++DL
Sbjct: 193 MIDGYVKCGLIVSARELFDLMPMEMKNLISWNSMISGYAQTSDGVDIASKLFADMPEKDL 252

Query: 220 FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIR 279
            SW  ++DG+ K G++E A+ +F  MP R++V+W  MI+GY K G V  A  LFD M  R
Sbjct: 253 ISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHR 312

Query: 280 DLITWNSMIAGYELNGRFMEALELLETMLI-GDVLPNDATLVSALSAVAGLAVLNKGRWM 338
           D++ +NSM+AGY  N   MEALE+   M     +LP+D TLV  L A+A L  L+K   M
Sbjct: 313 DVVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDM 372

Query: 339 HSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMA 398
           H YIV+  F + G LG  LI MYSKCGSI+ A+ VF  I  K + HW AMI GL +HG+ 
Sbjct: 373 HLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLG 432

Query: 399 TQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGC 458
             A D+  ++ R+ +KP  ITF+GVLNACSH+GLV +G   F +M   + IEP ++HYGC
Sbjct: 433 ESAFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGC 492

Query: 459 LVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDT 518
           +VDIL R+G +E AK+ IE MP+ PN VIW + L+   +H   + GE  A +LI  A   
Sbjct: 493 MVDILSRSGSIELAKNLIEEMPVEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAGYN 552

Query: 519 IGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVV 570
              YV+LSN+YA+ G W  V  VR MMK+R   K PG S IE  G +HEF V
Sbjct: 553 PSSYVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCSWIELDGRVHEFFV 604


>gi|90657651|gb|ABD96949.1| hypothetical protein [Cleome spinosa]
          Length = 639

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 226/605 (37%), Positives = 344/605 (56%), Gaps = 45/605 (7%)

Query: 26  NILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHP 85
           ++L+   +     Q+HA   +  L  +    ++++    DP   ++ YA  +    +Q P
Sbjct: 21  DLLQSCESMAHLTQIHAKIFRVGLQDNMDTLTKIVLFCTDPSRGSIRYAERVLG-FVQSP 79

Query: 86  SLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIH 145
            LV+YNL+IK    ++   + L LF +L  + L PDNFTLP V K    LG + EG+++H
Sbjct: 80  CLVMYNLMIKAVAKDENFRKVLVLFSELRKQGLNPDNFTLPPVFKAMGCLGKVVEGEKVH 139

Query: 146 GLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVE 205
           G V K   GFD  V +S++ MY   G++++ ++VFD + ++D+VSWN LI  YV   + E
Sbjct: 140 GYVVK--SGFDACVCNSVMGMYGALGKMEVAKKVFDEIPERDVVSWNVLISSYVGHRKFE 197

Query: 206 VAMKLFDEMP-----------------------------------DRDLFSWT----CLV 226
            A+ +F  M                                    D +L   T     L+
Sbjct: 198 DAIAVFRRMRRESNLKADEATVVSTLSACSVLRNQEVGEEIHRYVDAELEMTTKIGNALL 257

Query: 227 DGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNS 286
           D + KCG V+ AR IF  M N+N++ W +M++GY   G +D A ELF+   +RD++ W +
Sbjct: 258 DMYCKCGCVDKARAIFDEMGNKNVICWTSMVSGYASNGSLDEARELFERSPVRDIVLWTA 317

Query: 287 MIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNG 346
           MI GY     F EAL+L   M I  + P++  LV+ L   A    L +G+W+H YI +N 
Sbjct: 318 MINGYVQFNLFDEALKLFRKMQIQRLRPDNFILVTLLKGCAQTGALEQGKWLHGYIHENS 377

Query: 347 FVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFN 406
             +D V+GT L+ +Y+KCG +E AL VF  + ++    WT++I GL ++GM ++ALD F+
Sbjct: 378 ITLDRVVGTALVDVYAKCGCVEKALEVFYEMKERDTASWTSVIYGLAVNGMTSKALDFFS 437

Query: 407 KMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRT 466
           +M   G +P  ITFIGVL AC+H GLV +GRRYF+ M   Y I+P  EHY CL+D+LCR 
Sbjct: 438 QMEEAGFRPDDITFIGVLTACNHGGLVEEGRRYFDSMTKTYKIQPKSEHYSCLIDLLCRA 497

Query: 467 GYLEEAKSTIESMPMRPNFVI---WMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYV 523
           G L+EA+  +E +P+  + ++   + SLLS  RN+GN  + E     L +V       + 
Sbjct: 498 GLLDEAELLLEMIPIESSDIVVPLYCSLLSACRNYGNLKMSERVGRRLERVEVKDSSVHT 557

Query: 524 VLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHS 583
           +L+++YA+A +W+ V+ VR  MK+ G RK PG SSIE  GVLHEF+VG  SH + D+IHS
Sbjct: 558 LLASVYASANRWEDVTTVRRKMKELGIRKFPGCSSIEVNGVLHEFMVGGPSHMEMDDIHS 617

Query: 584 KLSEM 588
            L ++
Sbjct: 618 VLGQV 622


>gi|357502061|ref|XP_003621319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496334|gb|AES77537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 605

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 226/604 (37%), Positives = 356/604 (58%), Gaps = 10/604 (1%)

Query: 1   MQTQTLQHSSPIHALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLL 60
           MQ  +   +    +L++HL   +    L   +     +Q+HA  +K +L     I+ +L+
Sbjct: 4   MQVASSIRAFTWFSLRRHLEENI--TDLHKCTNPNHIKQIHAQLIKCHLHQDPYIAPKLI 61

Query: 61  SLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFL-- 118
           + Y     NNL  A ++F+++   P++ LYN LI+ Y  +     +L  F  LL   +  
Sbjct: 62  ASY--SLTNNLSSAVNVFNQV-PDPNVHLYNYLIRAYSLSGNESNSLCAFGVLLKMHVDG 118

Query: 119 -LPDNFTLPCVIKGAARLGA-IKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLG 176
            L DNFT P ++KG     + +   K +H  V KLGF +D FV +SL+  Y + G++++ 
Sbjct: 119 VLADNFTYPFLLKGCNGSSSWLSLVKMVHAHVEKLGFYWDIFVPNSLIDCYCRCGDVEMA 178

Query: 177 RRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVE 236
            +VF  M+++D+VSWN ++ G VK G+++ A+K+FDEMP+RD  SW  ++DGF+K G+++
Sbjct: 179 MKVFSGMEERDVVSWNSMVGGLVKNGDLDGALKVFDEMPERDRVSWNTMLDGFTKAGEMD 238

Query: 237 IAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGR 296
            A ++F RM  R++VSW+ M+ GY K GD+D A  LFD   +++L+ W ++I+GY   G+
Sbjct: 239 KAFKLFERMAERDIVSWSTMVCGYSKNGDMDMARMLFDRCPVKNLVLWTTIISGYAEKGQ 298

Query: 297 FMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTL 356
             EA+ L + M    +  +D   +S L+A A   +L  G+ MH   +++ F     +   
Sbjct: 299 VKEAMNLCDEMEKSGLRLDDGFFISILAACAESGMLGLGKKMHDSFLRSRFRCSTKVLNS 358

Query: 357 LIQMYSKCGSIESALTVFRAI-SKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKP 415
            I MY+KCG ++ A  VF  + ++K +  W +MI G G+HG   ++++LFN M R G KP
Sbjct: 359 FIDMYAKCGCVDDAFRVFNGMKTEKDLVSWNSMIHGFGIHGHGEKSIELFNTMVREGFKP 418

Query: 416 TAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKST 475
              TFIG+L AC+HAGLVN+GR YF  M   YGI P IEHYGC+VD+L R G+L+EA   
Sbjct: 419 DRYTFIGLLCACTHAGLVNEGRGYFYSMQRVYGIVPQIEHYGCMVDLLGRGGHLKEAFWL 478

Query: 476 IESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQW 535
           + SMP  PN +I  +LL   R H +  +    +  L K+ P   G + +LSNIYA +G W
Sbjct: 479 VRSMPFEPNAIILGTLLGACRMHNDVKLATSVSKYLFKLVPSDPGNFSLLSNIYAQSGDW 538

Query: 536 DKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAA 595
             V++VR+ M   G +K  G SSIE    +HEF V D SHP++ +I++ +  + + L+  
Sbjct: 539 INVAKVRKQMNDEGGQKPSGVSSIEVEEEVHEFTVRDWSHPKSGDIYNMIDRLVHDLRQV 598

Query: 596 GHVP 599
           G+VP
Sbjct: 599 GYVP 602


>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 638

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 208/474 (43%), Positives = 301/474 (63%), Gaps = 2/474 (0%)

Query: 217 RDLFSWTCLVDGFSKCGKVEIAREIFYRMPN-RNLVSWNAMINGYMKAGDVDSACELFDD 275
           +D+F    L+  +  C +VE A+++F  +P+ R++VSWN+MI G+++ G +  A +LF +
Sbjct: 166 KDVFVRNALIHLYCTCCRVESAKQVFDEVPSSRDVVSWNSMIVGFVRLGQISVAQKLFVE 225

Query: 276 MEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKG 335
           M  +D+I+W ++I+G   NG   +AL+  + +    + PN+A LVS L+A A L  L  G
Sbjct: 226 MPEKDVISWGTIISGCVQNGELEKALDYFKELGEQKLRPNEAILVSLLAAAAQLGTLEYG 285

Query: 336 RWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMH 395
           + +HS      F +   LGT L+ MY+KCG I+ +  +F  + +K    W  MI GL  H
Sbjct: 286 KRIHSIANSLRFPMTASLGTALVDMYAKCGCIDESRFLFDRMPEKDKWSWNVMICGLATH 345

Query: 396 GMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEH 455
           G+  +AL LF K    G  P  +TFIGVL ACS AGLV++G+ +F +M + YGIEP +EH
Sbjct: 346 GLGQEALALFEKFLTQGFHPVNVTFIGVLTACSRAGLVSEGKHFFKLMTDTYGIEPEMEH 405

Query: 456 YGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVA 515
           YGC+VD+L R G++ +A   I  MP  P+ V+W S+L   + HG  ++GE   N LI++ 
Sbjct: 406 YGCMVDLLSRAGFVYDAVEMINRMPAPPDPVLWASVLGSCQVHGFIELGEEIGNKLIQMD 465

Query: 516 PDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSH 575
           P   G YV L+ I+A   +W+ VS+VR +M +R   K  G S IE  G +H FV GDK H
Sbjct: 466 PTHNGHYVQLARIFARLRKWEDVSKVRRLMAERNSNKIAGWSLIEAEGRVHRFVAGDKEH 525

Query: 576 PQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVK 635
            +T EI+  L  M  ++ AAG+  + + VL  IE++ EKE  ++ HSERLAIAFGL+  K
Sbjct: 526 ERTTEIYKMLEIMGVRIAAAGYSANVSSVLHDIEEE-EKENAIKEHSERLAIAFGLLVTK 584

Query: 636 SRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
               IRI+KNLRVC DCH V+K++S ++ REIIVRD SRFHHFK G CSC+D+W
Sbjct: 585 DGDCIRIIKNLRVCGDCHEVSKIISLVFEREIIVRDGSRFHHFKKGICSCQDYW 638



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 114/233 (48%), Gaps = 11/233 (4%)

Query: 87  LVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHG 146
           ++ +  +I   V N    +AL  F +L ++ L P+   L  ++  AA+LG ++ GK+IH 
Sbjct: 231 VISWGTIISGCVQNGELEKALDYFKELGEQKLRPNEAILVSLLAAAAQLGTLEYGKRIHS 290

Query: 147 LVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEV 206
           +   L F     + ++LV MYAK G ID  R +FD M +KD  SWN +I G    G  + 
Sbjct: 291 IANSLRFPMTASLGTALVDMYAKCGCIDESRFLFDRMPEKDKWSWNVMICGLATHGLGQE 350

Query: 207 AMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNR-----NLVSWNAMI 257
           A+ LF++   +       ++  ++   S+ G V   +  F  M +       +  +  M+
Sbjct: 351 ALALFEKFLTQGFHPVNVTFIGVLTACSRAGLVSEGKHFFKLMTDTYGIEPEMEHYGCMV 410

Query: 258 NGYMKAGDVDSACELFDDMEI-RDLITWNSMIAGYELNGRFMEALELLETMLI 309
           +   +AG V  A E+ + M    D + W S++   +++G F+E  E +   LI
Sbjct: 411 DLLSRAGFVYDAVEMINRMPAPPDPVLWASVLGSCQVHG-FIELGEEIGNKLI 462



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 92/218 (42%), Gaps = 34/218 (15%)

Query: 314 PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTV 373
           PN  TL   L A +    + +G  + ++++K GFV D  +   LI +Y  C  +ESA  V
Sbjct: 131 PNKHTLTFVLQACSNAFAIREGAQVQTHVIKLGFVKDVFVRNALIHLYCTCCRVESAKQV 190

Query: 374 FRAI-SKKKVGHWTAMIVG---LG----------------------------MHGMATQA 401
           F  + S + V  W +MIVG   LG                             +G   +A
Sbjct: 191 FDEVPSSRDVVSWNSMIVGFVRLGQISVAQKLFVEMPEKDVISWGTIISGCVQNGELEKA 250

Query: 402 LDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVD 461
           LD F ++    ++P     + +L A +  G +  G+R  + + N      T      LVD
Sbjct: 251 LDYFKELGEQKLRPNEAILVSLLAAAAQLGTLEYGKR-IHSIANSLRFPMTASLGTALVD 309

Query: 462 ILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
           +  + G ++E++   + MP +  +  W  ++ G   HG
Sbjct: 310 MYAKCGCIDESRFLFDRMPEKDKWS-WNVMICGLATHG 346


>gi|297807343|ref|XP_002871555.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317392|gb|EFH47814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 822

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 233/659 (35%), Positives = 375/659 (56%), Gaps = 13/659 (1%)

Query: 40  LHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVF 99
           LH+  VK     ++ + + L++ Y      ++  ARS+F+ IL    +V++  ++ CYV 
Sbjct: 168 LHSPIVKLGYDSNAFVGAALINAY--SVCGSVDSARSVFEGILC-KDIVVWAGIVSCYVE 224

Query: 100 NQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFV 159
           N    ++L L   +     +P+N+T    +K +  LGA    K +HG + K  +  D  V
Sbjct: 225 NGCFEDSLQLLSRMGMDGFMPNNYTFDTALKASIGLGAFHFAKSVHGQILKTCYELDPRV 284

Query: 160 LSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD--- 216
              L+ +Y + G++    +VF+ M   D+V W+ +I  + + G    A+ +F  M +   
Sbjct: 285 GVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNKAVDIFIRMREGFV 344

Query: 217 -RDLFSWTCLVDG--FSKC-GKVEIAREIFYRMP-NRNLVSWNAMINGYMKAGDVDSACE 271
             + F+ + +++G    KC G  E    +  ++  + ++   NA+I+ Y K   +D+A +
Sbjct: 345 VPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDVYVSNALIDVYAKCEKMDTAVK 404

Query: 272 LFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAV 331
           LF ++  +++++WN++I GYE  G   +AL +    L   V   + T  SAL A A LA 
Sbjct: 405 LFAELSSKNVVSWNTVIVGYENLGEGGKALNMFREALRNQVSVTEVTFSSALGACASLAS 464

Query: 332 LNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVG 391
           +  G  +H   +K        +   LI MY+KCG I+ A TVF  +    V  W A+I G
Sbjct: 465 MELGVQVHGLAIKTNNAKRVAVSNSLIDMYAKCGDIKVAQTVFNEMETIDVASWNALISG 524

Query: 392 LGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP 451
              HG+  QAL +F+ M     KP  +TF+GVL+ CS+AGL++ G+  F  MI D+GIEP
Sbjct: 525 YSTHGLGRQALRIFDIMKGSDCKPNGLTFLGVLSGCSNAGLIDQGQDCFESMICDHGIEP 584

Query: 452 TIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNL 511
            +EHY C+V +  R+G L++A + IE +P  P+ +IW ++LS + N  N++    +A  +
Sbjct: 585 CLEHYTCMVRLFGRSGQLDKAMNLIEGIPYEPSVMIWRAMLSASMNQYNEEFARRSAEEI 644

Query: 512 IKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVG 571
           +K+ P     YV+LSN+YA A QW  V+ +R+ MK++G +K+PG S IEH+G +H F VG
Sbjct: 645 LKINPKDEATYVLLSNMYAGAKQWANVASIRKSMKEKGVKKEPGLSWIEHQGDVHFFSVG 704

Query: 572 DKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGL 631
              HP    I+  L  +  K   AG+VPD   VLL ++D+ EK+  L  HSERLA+A+GL
Sbjct: 705 SSDHPDMKLINGMLEWLNMKATRAGYVPDRNAVLLDMDDE-EKDKRLWVHSERLALAYGL 763

Query: 632 INV-KSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           + +  SR+ I I+KNLR+C+DCHS  K++S I  R++++RD +RFHHF  G CSC D W
Sbjct: 764 VRMPSSRNRILIMKNLRICSDCHSAMKVISSIVQRDLVIRDMNRFHHFHAGVCSCDDHW 822



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 95/363 (26%), Positives = 167/363 (46%), Gaps = 6/363 (1%)

Query: 141 GKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVK 200
            K IH  + K G   D F  + L++ Y K G       +FD M +++ VS+  L  GY  
Sbjct: 68  AKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLFDEMPERNNVSYVTLTQGYAC 127

Query: 201 KGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIA----REIFYRMPNRNLVSWNAM 256
           +  V +  +L  E  + +   +T  +  F    K EI       I     + N     A+
Sbjct: 128 QDPVGLYSRLHREGHELNPHVFTSFLKLFVSLDKAEICWWLHSPIVKLGYDSNAFVGAAL 187

Query: 257 INGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPND 316
           IN Y   G VDSA  +F+ +  +D++ W  +++ Y  NG F ++L+LL  M +   +PN+
Sbjct: 188 INAYSVCGSVDSARSVFEGILCKDIVVWAGIVSCYVENGCFEDSLQLLSRMGMDGFMPNN 247

Query: 317 ATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRA 376
            T  +AL A  GL   +  + +H  I+K  + +D  +G  L+Q+Y++ G +  A  VF  
Sbjct: 248 YTFDTALKASIGLGAFHFAKSVHGQILKTCYELDPRVGVGLLQLYTQLGDMSDAFKVFNE 307

Query: 377 ISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDG 436
           + K  V  W+ MI     +G   +A+D+F +M    + P   T   +LN C+       G
Sbjct: 308 MPKNDVVPWSFMIARFCQNGFCNKAVDIFIRMREGFVVPNEFTLSSILNGCAIGKCSGLG 367

Query: 437 RRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGAR 496
            +   +++   G +  +     L+D+  +   ++ A      +  + N V W +++ G  
Sbjct: 368 EQLHGLVVK-VGFDLDVYVSNALIDVYAKCEKMDTAVKLFAELSSK-NVVSWNTVIVGYE 425

Query: 497 NHG 499
           N G
Sbjct: 426 NLG 428



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 121/263 (46%), Gaps = 13/263 (4%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +QLH L VK        +S+ L+ +Y       +  A  +F   L   ++V +N +I  Y
Sbjct: 368 EQLHGLVVKVGFDLDVYVSNALIDVYA--KCEKMDTAVKLFAE-LSSKNVVSWNTVIVGY 424

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
                  +AL +F + L   +     T    +   A L +++ G Q+HGL  K       
Sbjct: 425 ENLGEGGKALNMFREALRNQVSVTEVTFSSALGACASLASMELGVQVHGLAIKTNNAKRV 484

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
            V +SL+ MYAK G+I + + VF+ M+  D+ SWN LI GY   G    A+++FD M   
Sbjct: 485 AVSNSLIDMYAKCGDIKVAQTVFNEMETIDVASWNALISGYSTHGLGRQALRIFDIMKGS 544

Query: 218 DL----FSWTCLVDGFSKCGKVEIAREIFYRMPNRN-----LVSWNAMINGYMKAGDVDS 268
           D      ++  ++ G S  G ++  ++ F  M   +     L  +  M+  + ++G +D 
Sbjct: 545 DCKPNGLTFLGVLSGCSNAGLIDQGQDCFESMICDHGIEPCLEHYTCMVRLFGRSGQLDK 604

Query: 269 ACELFDDMEIR-DLITWNSMIAG 290
           A  L + +     ++ W +M++ 
Sbjct: 605 AMNLIEGIPYEPSVMIWRAMLSA 627



 Score = 41.2 bits (95), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 33/178 (18%), Positives = 81/178 (45%), Gaps = 5/178 (2%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYV 98
           Q+H L++KTN      +S+ L+ +Y      ++  A+++F+  ++   +  +N LI  Y 
Sbjct: 470 QVHGLAIKTNNAKRVAVSNSLIDMYA--KCGDIKVAQTVFNE-METIDVASWNALISGYS 526

Query: 99  FNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQ-IHGLVFKLGFGFDK 157
            +    +AL +F  +      P+  T   V+ G +  G I +G+     ++   G     
Sbjct: 527 THGLGRQALRIFDIMKGSDCKPNGLTFLGVLSGCSNAGLIDQGQDCFESMICDHGIEPCL 586

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMD-DKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
              + +V ++ + G++D    + + +  +  ++ W  ++   + +   E A +  +E+
Sbjct: 587 EHYTCMVRLFGRSGQLDKAMNLIEGIPYEPSVMIWRAMLSASMNQYNEEFARRSAEEI 644


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 240/661 (36%), Positives = 372/661 (56%), Gaps = 17/661 (2%)

Query: 40  LHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVF 99
            H L++K  L     ++S LL +Y       L  AR +FD      +++ +N +I  Y  
Sbjct: 321 FHGLALKLGLCGELKVNSSLLDMY--SKCGYLCEARVLFDT--NEKNVISWNSMIGGYSK 376

Query: 100 NQRSHEALTLFCDL-LDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGF-GFDK 157
           ++    A  L   + ++  +  +  TL  V+          + K+IHG   + GF   D+
Sbjct: 377 DRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCEEEIQFLKLKEIHGYALRHGFIQSDE 436

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP-- 215
            V ++ V+ YAK G +     VF  M+ K + SWN LI G+V+ G    A+ L+  M   
Sbjct: 437 LVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQNGFPRKALDLYLLMRGS 496

Query: 216 --DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWN-----AMINGYMKAGDVDS 268
             + DLF+   L+   ++   +   +EI   M  RN    +     ++++ Y++ G +  
Sbjct: 497 GLEPDLFTIASLLSACARLKSLSCGKEIHGSML-RNGFELDEFICISLVSLYVQCGKILL 555

Query: 269 ACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAG 328
           A   FD+ME ++L+ WN+MI G+  N    +AL++   ML   + P++ +++ AL A + 
Sbjct: 556 AKLFFDNMEEKNLVCWNTMINGFSQNEFPFDALDMFHQMLSSKIWPDEISIIGALGACSQ 615

Query: 329 LAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAM 388
           ++ L  G+ +H + VK+       +   LI MY+KCG +E +  +F  +  K    W  +
Sbjct: 616 VSALRLGKELHCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVHLKGEVTWNVL 675

Query: 389 IVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYG 448
           I G G+HG   +A++LF  M   G +P ++TFI +L AC+HAGLV +G  Y   M + +G
Sbjct: 676 ITGYGIHGHGRKAIELFKSMQNAGFRPDSVTFIALLTACNHAGLVAEGLEYLGQMQSLFG 735

Query: 449 IEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAA 508
           I+P +EHY C+VD+L R G L EA   +  +P +P+  IW SLLS  RN+ + DIGE  A
Sbjct: 736 IKPKLEHYACVVDMLGRAGRLNEALELVNELPDKPDSRIWSSLLSSCRNYRDLDIGEKVA 795

Query: 509 NNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEF 568
           N L+++ PD    YV++SN YA  G+WD+V ++R+ MK+ G +KD G S IE  G +  F
Sbjct: 796 NKLLELGPDKAENYVLISNFYARLGKWDEVRKMRQRMKEIGLQKDAGCSWIEIGGKVSRF 855

Query: 569 VVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIA 628
           +VGD+S  Q+ +I     E+  K+   G+ PDT+ VL  +E+  EK   L NHSE+LAI+
Sbjct: 856 LVGDESLLQSMKIQQTWIELEKKINKIGYKPDTSCVLHELEED-EKIKILRNHSEKLAIS 914

Query: 629 FGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDF 688
           FGL+N    + +R+ KNLR+C DCH+  KL+S I  REIIVRDN RFHHFKNG CSC D+
Sbjct: 915 FGLLNTAKGTTLRVCKNLRICVDCHNAIKLVSKIDKREIIVRDNKRFHHFKNGFCSCGDY 974

Query: 689 W 689
           W
Sbjct: 975 W 975



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 145/586 (24%), Positives = 249/586 (42%), Gaps = 122/586 (20%)

Query: 57  SRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLD- 115
           +RL+++Y    I +  Y   +     +  +L L+N L+  Y+ N    +A+ +F +++  
Sbjct: 133 TRLVTMY---SICDSPYDSCLVFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEMISL 189

Query: 116 RFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDL 175
              +PDNFTLPCVIK    +  ++ G+ +HG   K     D FV ++L++MY KFG ++ 
Sbjct: 190 TEFVPDNFTLPCVIKACVGVYDVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFVES 249

Query: 176 GRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLF------DE--MPD----------- 216
             +VFD M  ++LVSWN ++   ++ G  E +  LF      DE  MPD           
Sbjct: 250 AVKVFDKMPQRNLVSWNSVMYACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLC 309

Query: 217 ----------------------RDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWN 254
                                  +L   + L+D +SKCG +  AR + +    +N++SWN
Sbjct: 310 ARQGEVRLGMVFHGLALKLGLCGELKVNSSLLDMYSKCGYLCEAR-VLFDTNEKNVISWN 368

Query: 255 AMINGYMKAGDVDSACELFDDMEIRDLITWNSM--------------------IAGYELN 294
           +MI GY K  D   A EL   M++ D +  N +                    I GY L 
Sbjct: 369 SMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCEEEIQFLKLKEIHGYALR 428

Query: 295 GRFMEALELLETMLIG-----------------------------------DVLPNDA-- 317
             F+++ EL+    +                                    +  P  A  
Sbjct: 429 HGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQNGFPRKALD 488

Query: 318 ---------------TLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYS 362
                          T+ S LSA A L  L+ G+ +H  +++NGF +D  +   L+ +Y 
Sbjct: 489 LYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRNGFELDEFICISLVSLYV 548

Query: 363 KCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIG 422
           +CG I  A   F  + +K +  W  MI G   +     ALD+F++M    + P  I+ IG
Sbjct: 549 QCGKILLAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDALDMFHQMLSSKIWPDEISIIG 608

Query: 423 VLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMR 482
            L ACS    +  G+      +  +  E +      L+D+  + G +E++++  + + ++
Sbjct: 609 ALGACSQVSALRLGKELHCFAVKSHLTEHSFVTCS-LIDMYAKCGCMEQSQNIFDRVHLK 667

Query: 483 PNFVIWMSLLS--GARNHGNKDIGEYAANNLIKVAPDTIGCYVVLS 526
              V W  L++  G   HG K I  + +       PD++    +L+
Sbjct: 668 GE-VTWNVLITGYGIHGHGRKAIELFKSMQNAGFRPDSVTFIALLT 712



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 72/167 (43%), Gaps = 4/167 (2%)

Query: 335 GRWMHSYIVKNG-FVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLG 393
           GR +H++I  +  F  D VL T L+ MYS C S   +  VF A  +K +  W A++ G  
Sbjct: 112 GRKIHNFISTSPHFQNDVVLITRLVTMYSICDSPYDSCLVFNASRRKNLFLWNALLSGYL 171

Query: 394 MHGMATQALDLFNKMCRMG-MKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT 452
            + +   A+ +F +M  +    P   T   V+ AC     V  G       +    +   
Sbjct: 172 RNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLGEAVHGFALKTKVLSDV 231

Query: 453 IEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
                 L+ +  + G++E A    + MP R N V W S++     +G
Sbjct: 232 FVG-NALIAMYGKFGFVESAVKVFDKMPQR-NLVSWNSVMYACLENG 276


>gi|357450099|ref|XP_003595326.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484374|gb|AES65577.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 740

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 226/627 (36%), Positives = 347/627 (55%), Gaps = 70/627 (11%)

Query: 112 DLLDRFLLPDN--FTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAK 169
           + LD F+ P N  F  P +     +       KQIH  +   G  F  + LS L+ + +K
Sbjct: 135 NFLD-FMKPKNHIFNHPTLQTLQQKCNNFNTLKQIHTQIITTGLSFQTYCLSHLIKISSK 193

Query: 170 FGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKK---GEVEVAMKLFDEM------------ 214
           F  +    ++F+ + +  +  +N LI   + +    ++ +A  L++++            
Sbjct: 194 FN-LPYAFKIFNYISNPTIFLYNTLISSLINQTNQNQIHLAFSLYNKILTNKNLQPNSFT 252

Query: 215 ------------------------------PDRDLFSWTCLVDGFSKCGKVEIAREIFYR 244
                                         P  D F    L++ ++K GK+ ++R IF R
Sbjct: 253 FPSLFKACCSNQSWFHYGPLLHTHVLKFLQPPFDNFVQASLLNFYAKYGKMCVSRYIFDR 312

Query: 245 MPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELL 304
           +   +L +WN ++N Y ++    S    FDD +                    +E+L L 
Sbjct: 313 INEPDLATWNVILNAYARSSSYHSYSNSFDDADFS------------------LESLYLF 354

Query: 305 ETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKC 364
             M +  + PN+ T+V+ +SA + L  +++G W+H ++++N   ++  +GT  + MYSKC
Sbjct: 355 RDMQVIGIRPNEVTIVALISACSNLGAVSQGFWVHCFVLRNKIKMNRFVGTAFVDMYSKC 414

Query: 365 GSIESALTVFRAISKKKVGH--WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIG 422
           G +  A  VF  + +       +TAMI G  +HG   QAL+L+ KM   G+ P + TF+ 
Sbjct: 415 GCLNLACQVFDKMPENDRDSFCYTAMIGGFAVHGYGNQALELYRKMKFKGLVPDSATFVV 474

Query: 423 VLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMR 482
            + ACSH GLV +G   F  M   +G+EP +EHYGCL+D+L R G L+EA+  +  MPM+
Sbjct: 475 TMFACSHVGLVEEGLEIFKSMKEVHGVEPKLEHYGCLIDLLGRAGRLKEAEEWLADMPMK 534

Query: 483 PNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVR 542
           PN V+W SLL  AR HGN  +GE A   LI++ P+T G YV+LSN+YA+ G+ + V  VR
Sbjct: 535 PNAVLWRSLLGAARIHGNLGVGEVALTKLIELEPETSGNYVLLSNMYASVGRVNDVKRVR 594

Query: 543 EMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTT 602
           ++MK  G  K PG S +E +G +HEF+ GD+SHP + EI+ K++E+ ++L+  GH   T+
Sbjct: 595 KLMKHHGVNKLPGFSLVEIKGAMHEFLTGDRSHPFSKEIYLKIAEINSRLEEYGHKARTS 654

Query: 603 QVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGI 662
           + L  +E++ +KE  L  HSERLAIAF LI   S   IRI+KNLRVC DCH+ TKL+S  
Sbjct: 655 EALFDLEEE-DKEGVLSYHSERLAIAFALIASPSSLAIRIIKNLRVCGDCHAFTKLISVA 713

Query: 663 YNREIIVRDNSRFHHFKNGSCSCKDFW 689
           Y+REIIVRD +RFHHFK+GSCSC D+W
Sbjct: 714 YHREIIVRDRNRFHHFKDGSCSCLDYW 740



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 126/266 (47%), Gaps = 28/266 (10%)

Query: 55  ISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYV-----------FNQR- 102
           + + LL+ Y       +  +R IFDRI   P L  +N+++  Y            F+   
Sbjct: 289 VQASLLNFYAK--YGKMCVSRYIFDRI-NEPDLATWNVILNAYARSSSYHSYSNSFDDAD 345

Query: 103 -SHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLS 161
            S E+L LF D+    + P+  T+  +I   + LGA+ +G  +H  V +     ++FV +
Sbjct: 346 FSLESLYLFRDMQVIGIRPNEVTIVALISACSNLGAVSQGFWVHCFVLRNKIKMNRFVGT 405

Query: 162 SLVSMYAKFGEIDLGRRVFDAM--DDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL 219
           + V MY+K G ++L  +VFD M  +D+D   +  +I G+   G    A++L+ +M  + L
Sbjct: 406 AFVDMYSKCGCLNLACQVFDKMPENDRDSFCYTAMIGGFAVHGYGNQALELYRKMKFKGL 465

Query: 220 F--SWTCLVDGF--SKCGKVEIAREIFYRMP-----NRNLVSWNAMINGYMKAGDVDSAC 270
              S T +V  F  S  G VE   EIF  M         L  +  +I+   +AG +  A 
Sbjct: 466 VPDSATFVVTMFACSHVGLVEEGLEIFKSMKEVHGVEPKLEHYGCLIDLLGRAGRLKEAE 525

Query: 271 ELFDDMEIR-DLITWNSMIAGYELNG 295
           E   DM ++ + + W S++    ++G
Sbjct: 526 EWLADMPMKPNAVLWRSLLGAARIHG 551


>gi|255543413|ref|XP_002512769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547780|gb|EEF49272.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 684

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 233/661 (35%), Positives = 363/661 (54%), Gaps = 43/661 (6%)

Query: 70  NLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVI 129
           +L  A  +FD+I + P L  + +LI  +  +    +A+ ++  LL R + PD F L  V 
Sbjct: 26  DLKRALYLFDKIPE-PDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVRPDKFVLLSVA 84

Query: 130 KGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLV 189
           K  A  G +   K+IH    + GF  D  + ++L+ M+ K   ++  R VFD M  KD+V
Sbjct: 85  KACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFDDMVVKDVV 144

Query: 190 SWNCLIDGYVKKGEVEVAMKLFDEMP---------------------------------- 215
           SW  +   YV  G     + LF EM                                   
Sbjct: 145 SWTSMTYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSILPACADYIKLGREVHGFILR 204

Query: 216 ---DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACEL 272
              + +++  + LV+ ++    ++ AR +F  M +R++VSWN M+  Y    + +    L
Sbjct: 205 NEMEGNVYVSSALVNMYASSLGLKQARLVFDSMYHRDIVSWNVMLTAYFLNKEYERGLGL 264

Query: 273 FDDMEIRDL----ITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAG 328
           F  M    +     +WN+ I+G   NG+   AL +L  M    + PN  T+VSAL     
Sbjct: 265 FHQMRKEGIKLNQASWNAAISGCMQNGQHELALGILCKMQDSGIKPNRITIVSALPGCTN 324

Query: 329 LAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAM 388
           L  L  G+ +H Y+ ++ F+ D  + T L+ +Y+KCG +E +  VF  + +K V  W  M
Sbjct: 325 LESLRGGKEIHGYVFRHWFIEDVTITTALVLLYAKCGDLELSRHVFNTMPRKDVVAWNTM 384

Query: 389 IVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYG 448
           I+   MHG   ++L LFNKM   G++P ++TFIGVL+ CSH+ L ++G   FN M +++ 
Sbjct: 385 IMANSMHGKGGESLILFNKMLDSGVEPNSVTFIGVLSGCSHSQLADEGLLVFNSMSSEHS 444

Query: 449 IEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAA 508
           I P  +HY C+VD+L R G LEEA   I  MP+ P    W +LL   R + N ++G  AA
Sbjct: 445 ITPDADHYSCMVDVLSRAGRLEEAYDFIRKMPIEPTAAAWGALLGACRVYKNVELGTLAA 504

Query: 509 NNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEF 568
           + L ++ PD  G YV+LSNI   A +W + SE+R+MM+ +G  K PG S ++ +  ++ F
Sbjct: 505 SQLFEIEPDNAGNYVLLSNILVTAKKWVEASEIRKMMRDKGLAKTPGRSWVQVKNKVYSF 564

Query: 569 VVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIA 628
           V GDKS+ Q D I+  L E+  K++  G+ P+T  VL  + DQ+++E  L +HSERLA+A
Sbjct: 565 VTGDKSNEQKDMIYRFLDEIDEKMRLDGYQPNTDFVLQNV-DQEQREETLCSHSERLAVA 623

Query: 629 FGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDF 688
           FG++N   ++ +R+ KNLR+C DCH+  KL++ I   +IIVRD+ RFHHF++G C+C DF
Sbjct: 624 FGILNSSGKTTVRVFKNLRICGDCHNAIKLIAKIVGMQIIVRDSLRFHHFRDGYCTCNDF 683

Query: 689 W 689
           W
Sbjct: 684 W 684



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 92/401 (22%), Positives = 173/401 (43%), Gaps = 49/401 (12%)

Query: 171 GEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLV 226
           G++     +FD + + DL +W  LI G+ + G  + A+ ++  +  R    D F    + 
Sbjct: 25  GDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVRPDKFVLLSVA 84

Query: 227 DGFSKCGKVEIAREIFYRMP----NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLI 282
              +  G + +A++I         N++LV  NA+I+ + K   V+ A  +FDDM ++D++
Sbjct: 85  KACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFDDMVVKDVV 144

Query: 283 TWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYI 342
           +W SM   Y   G   + + L   M +  +  N  T+ S L A A    L  GR +H +I
Sbjct: 145 SWTSMTYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSILPACADYIKL--GREVHGFI 202

Query: 343 VKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQAL 402
           ++N    +  + + L+ MY+    ++ A  VF ++  + +  W  M+    ++    + L
Sbjct: 203 LRNEMEGNVYVSSALVNMYASSLGLKQARLVFDSMYHRDIVSWNVMLTAYFLNKEYERGL 262

Query: 403 DLFNKM--------------------------------CRM---GMKPTAITFIGVLNAC 427
            LF++M                                C+M   G+KP  IT +  L  C
Sbjct: 263 GLFHQMRKEGIKLNQASWNAAISGCMQNGQHELALGILCKMQDSGIKPNRITIVSALPGC 322

Query: 428 SHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVI 487
           ++   +  G+     +   + IE  +     LV +  + G LE ++    +MP R + V 
Sbjct: 323 TNLESLRGGKEIHGYVFRHWFIE-DVTITTALVLLYAKCGDLELSRHVFNTMP-RKDVVA 380

Query: 488 WMSLLSGARNHGNKDIGEYAANNLIK--VAPDTIGCYVVLS 526
           W +++     HG         N ++   V P+++    VLS
Sbjct: 381 WNTMIMANSMHGKGGESLILFNKMLDSGVEPNSVTFIGVLS 421



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 117/239 (48%), Gaps = 4/239 (1%)

Query: 256 MINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPN 315
           +I   + +GD+  A  LFD +   DL TW  +I+G+  +G   +A+++  T+L  +V P+
Sbjct: 17  LIKTCLNSGDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVRPD 76

Query: 316 DATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFR 375
              L+S   A A    L   + +H   ++ GF  D VLG  LI M+ KC  +  A  VF 
Sbjct: 77  KFVLLSVAKACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFD 136

Query: 376 AISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVND 435
            +  K V  WT+M       GM  Q + LF +M   G++  ++T   +L AC  A  +  
Sbjct: 137 DMVVKDVVSWTSMTYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSILPAC--ADYIKL 194

Query: 436 GRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG 494
           GR     ++ +  +E  +     LV++   +  L++A+   +SM  R + V W  +L+ 
Sbjct: 195 GREVHGFILRNE-MEGNVYVSSALVNMYASSLGLKQARLVFDSMYHR-DIVSWNVMLTA 251


>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Cucumis sativus]
          Length = 781

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 225/627 (35%), Positives = 347/627 (55%), Gaps = 43/627 (6%)

Query: 8   HSSPIHALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPH 67
           H  P+      L  +     L+   +  + +Q+ +   +  L       ++L++   D  
Sbjct: 130 HLVPVLLRISKLTKKSCIECLRNCKSMDQLKQIQSQIFRIGLEGDRDTINKLMAFCADSS 189

Query: 68  INNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPC 127
           + NL YA  IF+ + Q PSL +YN+++K Y       + L LF  L +  L PD FT P 
Sbjct: 190 LGNLRYAEKIFNYV-QDPSLFVYNVMVKMYAKRGILRKVLLLFQQLREDGLWPDGFTYPF 248

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD 187
           V+K    L  +++G+++ G + K G   D +V +SL+ MY +   ++  +++FD M  +D
Sbjct: 249 VLKAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRD 308

Query: 188 LVSWNCLIDGYVKKGEVEVAMKLFDEM-------PD------------------------ 216
            VSWN +I GYV+    E A+  F EM       PD                        
Sbjct: 309 SVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIH 368

Query: 217 ---RDLFSWT-----CLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDS 268
              R    +T      L+D ++KCG + IAR IF  M  +N++ W +MI+GY+  GD+  
Sbjct: 369 NYVRKELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLRE 428

Query: 269 ACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAG 328
           A +LFD   +RD++ W +MI GY     F +A+ L   M I  V P+  T+V+ L+  A 
Sbjct: 429 ARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQRVKPDKFTVVTLLTGCAQ 488

Query: 329 LAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAM 388
           L  L +G+W+H Y+ +N   +D V+GT LI+MYSKCG ++ +L +F  +  K    WT++
Sbjct: 489 LGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSI 548

Query: 389 IVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYG 448
           I GL M+G  ++AL LF++M R+G KP  ITFIGVL+ACSH GLV +GRR+FN M   + 
Sbjct: 549 ICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHR 608

Query: 449 IEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVI---WMSLLSGARNHGNKDIGE 505
           IEP +EHYGC++D+L R G L+EA+  I+ +P+    ++   + +LLS  R H N D+GE
Sbjct: 609 IEPKVEHYGCVIDLLGRAGLLDEAEELIQEIPIENCEIVVPLYGALLSACRIHNNVDMGE 668

Query: 506 YAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVL 565
             A  L  +       + +L+NIYA+  +W+   +VR  MK+ G +K PG S IE  G++
Sbjct: 669 RLAKKLENIESCDSSIHTLLANIYASVDRWEDAKKVRRKMKELGVKKMPGCSLIEVDGIV 728

Query: 566 HEFVVGDKSHPQTDEIHSKLSEMRNKL 592
           HEF+VGD SHP+  EI S L+ +  +L
Sbjct: 729 HEFLVGDPSHPEMMEICSMLNRVTGQL 755


>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 241/642 (37%), Positives = 363/642 (56%), Gaps = 59/642 (9%)

Query: 91  NLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLV-F 149
           N ++  Y  N +   A  LF  + +R L   N  +          G  K G +   +V F
Sbjct: 134 NAILDMYAKNGQVDLARNLFEQMAERTLADWNSMIS---------GCWKSGNETEAVVLF 184

Query: 150 KLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMK 209
            +    +    +S+V+ YAK G+++  RR FD M ++ +VSWN +   Y +K   + A+ 
Sbjct: 185 NMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALN 244

Query: 210 LFDEM------PDR---------------------------------DLFSWTCLVDGFS 230
           LF +M      PD                                  + F  T L+D  +
Sbjct: 245 LFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHA 304

Query: 231 KCGKVEIAREIFYRM-PNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIA 289
           K G +EIAR IF  +   RN V+WN MI+ Y + G +  A ELFD+M  RD+++WNSMIA
Sbjct: 305 KFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIA 364

Query: 290 GYELNGRFMEALELLETML-IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFV 348
           GY  NG    ++EL + M+   D+ P++ T+ S LSA   +  L    W+   IV+   +
Sbjct: 365 GYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLD-IVREKNI 423

Query: 349 VDGVLG-TLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNK 407
             G+ G   LI MYSKCGS+  A  +F+ +  + V  +  +I G   +G   +A+ L   
Sbjct: 424 KLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLT 483

Query: 408 MCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTG 467
           M   G++P  +T+IGVL ACSHAGL+N+G+  F  +       PT++HY C+VD+L R G
Sbjct: 484 MEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQ-----APTVDHYACMVDLLGRAG 538

Query: 468 YLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSN 527
            L+EAK  I+SMPM+P+  ++ SLL+ +R H    +GE AA+ L ++ P  +G YV+LSN
Sbjct: 539 ELDEAKMLIQSMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVLLSN 598

Query: 528 IYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSE 587
           IYA+ G+W+ V  VREMMKK G +K  G S +E++G +H+F VGD+SH Q+ +I+  L+E
Sbjct: 599 IYASFGRWEDVKRVREMMKKGGLKKSVGMSWVEYKGQVHKFTVGDRSHEQSKDIYKLLAE 658

Query: 588 MRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLR 647
           +  K+K  G V D +  L  +E+++++E  L  HSE+LAI F L+  +  + IR+VKNLR
Sbjct: 659 LERKMKRVGFVADKSCALRDVEEEEKEEM-LGTHSEKLAICFALLISEVGTTIRVVKNLR 717

Query: 648 VCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           +C DCH+  K++S +  REI+VRDN+RFH F  G CSC D+W
Sbjct: 718 ICLDCHTAIKMISKLEGREIVVRDNNRFHCFSEGMCSCHDYW 759



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 132/497 (26%), Positives = 217/497 (43%), Gaps = 44/497 (8%)

Query: 68  INNLHYARSIFDRILQHPSLVLYNLLIKCYVFN-QRSHEALTLFCDLLDRFLLPDNFTLP 126
           I+N+   R  F   L H SL  +N  +   + N  R H        +      PD     
Sbjct: 11  ISNIRQLRQ-FHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSSPSPDASVYS 69

Query: 127 CVIKGAARLGAI------------------------------KEGKQIHGLVFKLGFGFD 156
           C++K  +R+GA                               K G   H  V KLG   D
Sbjct: 70  CMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNLFHAYVLKLGHIDD 129

Query: 157 KFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD 216
            F+ ++++ MYAK G++DL R +F+ M ++ L  WN +I G  K G    A+ LF+ MP 
Sbjct: 130 HFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMPA 189

Query: 217 RDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDM 276
           R++ +WT +V G++K G +E AR  F  MP R++VSWNAM + Y +      A  LF  M
Sbjct: 190 RNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQM 249

Query: 277 E----IRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVL 332
                  D  TW   I+     G    A  +L  +    ++ N     + L   A    L
Sbjct: 250 LEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNL 309

Query: 333 NKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGL 392
              R +   +   G   + V   ++I  Y++ G +  A  +F  + K+ V  W +MI G 
Sbjct: 310 EIARNIFDEL---GSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGY 366

Query: 393 GMHGMATQALDLFNKMCR-MGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP 451
             +G +  +++LF +M   M ++P  +T   VL+AC H G +       + ++ +  I+ 
Sbjct: 367 AQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLD-IVREKNIKL 425

Query: 452 TIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG--ARNHGNKDIGEYAAN 509
            I  +  L+ +  + G + +A    ++M  R + V + +L+SG  A  HG + I      
Sbjct: 426 GISGFNSLIFMYSKCGSVADAHRIFQTMGTR-DVVSFNTLISGFAANGHGKEAIKLVLTM 484

Query: 510 NLIKVAPDTIGCYVVLS 526
               + PD +    VL+
Sbjct: 485 EEEGIEPDHVTYIGVLT 501


>gi|2583119|gb|AAB82628.1| hypothetical protein [Arabidopsis thaliana]
          Length = 606

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 238/592 (40%), Positives = 340/592 (57%), Gaps = 51/592 (8%)

Query: 26  NILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVD---PHINNLHYARSIFDRI- 81
           ++L    T  +  Q+H   +KT +I +S +++R++  +     P++ +  +AR +F    
Sbjct: 10  HVLGSCKTSDDVNQIHGRLIKTGIIKNSNLTTRIVLAFASSRRPYLAD--FARCVFHEYH 67

Query: 82  --------LQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
                   ++ P   L+N +IK +   +   +AL L C +L+  +  D F+L  V+K  +
Sbjct: 68  VCSFSFGEVEDP--FLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACS 125

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
           RLG +K G QIHG + K G   D F+ + L+ +Y K G + L R++FD M  +D VS+N 
Sbjct: 126 RLGFVKGGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNS 185

Query: 194 LIDGYVKKG----------------------------------EVEVAMKLFDEMPDRDL 219
           +IDGYVK G                                   V++A KLF +MP++DL
Sbjct: 186 MIDGYVKCGLIVSARELFDLMPMEMKNLISWNSMISGYAQTSDGVDIASKLFADMPEKDL 245

Query: 220 FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIR 279
            SW  ++DG+ K G++E A+ +F  MP R++V+W  MI+GY K G V  A  LFD M  R
Sbjct: 246 ISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHR 305

Query: 280 DLITWNSMIAGYELNGRFMEALELLETMLI-GDVLPNDATLVSALSAVAGLAVLNKGRWM 338
           D++ +NSM+AGY  N   MEALE+   M     +LP+D TLV  L A+A L  L+K   M
Sbjct: 306 DVVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDM 365

Query: 339 HSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMA 398
           H YIV+  F + G LG  LI MYSKCGSI+ A+ VF  I  K + HW AMI GL +HG+ 
Sbjct: 366 HLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLG 425

Query: 399 TQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGC 458
             A D+  ++ R+ +KP  ITF+GVLNACSH+GLV +G   F +M   + IEP ++HYGC
Sbjct: 426 ESAFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGC 485

Query: 459 LVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDT 518
           +VDIL R+G +E AK+ IE MP+ PN VIW + L+   +H   + GE  A +LI  A   
Sbjct: 486 MVDILSRSGSIELAKNLIEEMPVEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAGYN 545

Query: 519 IGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVV 570
              YV+LSN+YA+ G W  V  VR MMK+R   K PG S IE  G +HEF V
Sbjct: 546 PSSYVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCSWIELDGRVHEFFV 597


>gi|357438977|ref|XP_003589765.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478813|gb|AES60016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 960

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 241/720 (33%), Positives = 376/720 (52%), Gaps = 82/720 (11%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY- 97
           QLHAL  K      + I + ++ +YV     ++  A ++F  I + PSL  +N +I  Y 
Sbjct: 167 QLHALVSKLGFGMETCIQNSVVGMYVK--CGDVDLAETVFFDI-ERPSLFCWNSMIYGYS 223

Query: 98  ----------VFNQRSH--------------------EALTLFCDLLDRFLLPDNFTLPC 127
                     +FN+                       + L +F ++ ++   P+  T   
Sbjct: 224 QMYGPYKALQIFNRMPERDEVSWNTLISIFSQHGFGVQCLAMFVEMCNQGFSPNFMTYGS 283

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD 187
           V+   A    +K G  +H  + ++    D    + L+ MYAK G +DL +RVF ++ + D
Sbjct: 284 VLSACASTSDLKWGAHLHARILRMEHSLDLVFGNGLIDMYAKCGCLDLAKRVFKSLREHD 343

Query: 188 LVSWNCLIDGYVKKGEVEVAMKLFDEM---------------------PDRD-----LFS 221
            +SWN LI G V  G  E A+ LF++M                     PD       L  
Sbjct: 344 HISWNSLITGVVHFGLGEDALILFNQMRRSSVVLDEFILPTILGVCSGPDYASTGELLHG 403

Query: 222 WT-------------CLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDS 268
           +T              ++  ++KCG  + A  +F  MP RN +SW AMI  + ++GD+  
Sbjct: 404 YTIKSGMGSSAPVGNAIITMYAKCGDTDKADLVFRLMPLRNTISWTAMITAFSRSGDIGK 463

Query: 269 ACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAG 328
           A   FD M  R+++TWNSM++ Y  NG   E L+L  +M    V P+  T  +++ A A 
Sbjct: 464 ARGYFDMMPERNIVTWNSMLSTYVQNGFSEEGLKLYVSMRSNGVQPDWITFTTSIRACAD 523

Query: 329 LAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAM 388
           LA++  G  + ++  K G  ++  +   ++ MYS+CG I+ A   F +I  K +  W AM
Sbjct: 524 LAIVKLGMQVVTHATKFGLSLNVSVANSIVTMYSRCGLIKEAKNTFDSIDDKDLISWNAM 583

Query: 389 IVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYG 448
           +     +G+  + +D F  M +   KP  I+++ VL+ CSH GLV +G+ YF+ M   +G
Sbjct: 584 LAAFAQNGLGIKVIDTFEDMLKTECKPNHISYVSVLSGCSHMGLVAEGKHYFDSMTRVFG 643

Query: 449 IEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAA 508
           I PT EH+ C+VD+L R G LE+AK  IE MP +PN  +W +LL   R H +  + E AA
Sbjct: 644 ISPTNEHFSCMVDLLGRAGLLEQAKDLIEGMPFKPNATVWSALLGSCRVHHDLRLAETAA 703

Query: 509 NNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEF 568
             L+++  +    YV+LSN+Y+ +G+ D V+++R++MK +G R   G S IE    +H F
Sbjct: 704 KKLMELDVEGSEGYVLLSNMYSESGELDNVADMRKLMKVKGIRTSRGCSWIEVDNRVHVF 763

Query: 569 VVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIA 628
            V + SHPQ  E++ KL EM   ++  G         + +E    +  +   HSE+LA A
Sbjct: 764 TVDETSHPQIKEVYLKLEEMMKMIEDTGK-------YITVESSVHRSKKY--HSEKLAFA 814

Query: 629 FGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDF 688
           FGL+N+ S  PI ++KNLRVC+DCH V KLLS + +RE+I+RD  RFHHFK+G CSCKD+
Sbjct: 815 FGLLNLPSWMPIHVMKNLRVCDDCHLVIKLLSLVTSRELIMRDGYRFHHFKDGICSCKDY 874



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 104/442 (23%), Positives = 188/442 (42%), Gaps = 52/442 (11%)

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDD--KDLVSWNCLIDGYVKKGEVEVAMKLFDEM- 214
           F  ++++        +    ++FD M    KD VSW  +I GY + G    + + F  M 
Sbjct: 75  FTWNTMIRALVSSSRMSDAEKLFDEMPVRVKDSVSWTTMISGYSQNGFHSRSFETFSLMI 134

Query: 215 -------PDRDLFSWTCLVDG-----------------------------------FSKC 232
                   + D FS+T ++                                     + KC
Sbjct: 135 RDTNDGGKNYDPFSFTSVMKACGSLGDSRLAIQLHALVSKLGFGMETCIQNSVVGMYVKC 194

Query: 233 GKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYE 292
           G V++A  +F+ +   +L  WN+MI GY +      A ++F+ M  RD ++WN++I+ + 
Sbjct: 195 GDVDLAETVFFDIERPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTLISIFS 254

Query: 293 LNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV 352
            +G  ++ L +   M      PN  T  S LSA A  + L  G  +H+ I++    +D V
Sbjct: 255 QHGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARILRMEHSLDLV 314

Query: 353 LGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG 412
            G  LI MY+KCG ++ A  VF+++ +     W ++I G+   G+   AL LFN+M R  
Sbjct: 315 FGNGLIDMYAKCGCLDLAKRVFKSLREHDHISWNSLITGVVHFGLGEDALILFNQMRRSS 374

Query: 413 MKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEA 472
           +         +L  CS     + G       I   G+  +      ++ +  + G  ++A
Sbjct: 375 VVLDEFILPTILGVCSGPDYASTGELLHGYTIKS-GMGSSAPVGNAIITMYAKCGDTDKA 433

Query: 473 KSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPD-TIGCYVVLSNIYAA 531
                 MP+R N + W ++++     G  DIG+  A     + P+  I  +  + + Y  
Sbjct: 434 DLVFRLMPLR-NTISWTAMITAFSRSG--DIGK--ARGYFDMMPERNIVTWNSMLSTYVQ 488

Query: 532 AGQWDKVSEVREMMKKRGFRKD 553
            G  ++  ++   M+  G + D
Sbjct: 489 NGFSEEGLKLYVSMRSNGVQPD 510


>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Brachypodium distachyon]
          Length = 874

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 233/658 (35%), Positives = 380/658 (57%), Gaps = 10/658 (1%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +++HA SVK        + + L+++Y    +  +  A+++F R ++   +V +N L+   
Sbjct: 221 RRVHAQSVKFGCRSTVFVCNSLINMYSKCGL--VEEAKAVF-RQMETRDMVSWNTLMAGL 277

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
           + N+   EAL LF D           T   VIK  A L  +   +Q+H  V K GF  D 
Sbjct: 278 LLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALARQLHSCVLKHGFHSDG 337

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMD-DKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD 216
            V+++++  Y+K GE+D    +F  M   +++VSW  +I G ++  ++ +A  LF  M +
Sbjct: 338 NVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQNADIPLAAALFSRMRE 397

Query: 217 RDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACEL 272
            ++    F+++ ++         +I  +I             A++  Y K G+ + A  +
Sbjct: 398 DNVKPNEFTYSTVLTASIPILLPQIHAQIIKTNYQHAPSVGTALLASYSKLGNTEEALSI 457

Query: 273 FDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAG-LAV 331
           F  ++ +D++ W++M++ Y   G    A  +   M +  + PN+ T+ SA+ A A   A 
Sbjct: 458 FKMIDHKDVVAWSAMLSCYSQAGDCDGATNVFIKMSMQGMKPNEFTISSAIDACASPTAG 517

Query: 332 LNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVG 391
           +++GR  H+  +K  +     +G+ L+ MY++ GSI+SA  VF   + + +  W +MI G
Sbjct: 518 IDQGRQFHAISIKYRYQDAICVGSALVTMYARKGSIDSARIVFERQTDRDLVSWNSMISG 577

Query: 392 LGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP 451
              HG + +ALD F +M  +G++    TF+ V+  C+HAGLV +G++YF+ M+ D+ I P
Sbjct: 578 YAQHGYSKEALDTFRQMETVGIEMDGATFLAVIVGCTHAGLVKEGQQYFDSMVMDHNISP 637

Query: 452 TIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNL 511
           T+EHY C+VD+  R G L+E  + IE MP     ++W +LL   R H N ++G+ AA  L
Sbjct: 638 TMEHYSCMVDLYSRAGKLDETMNLIEGMPFPAGAMVWRTLLGACRVHKNVELGKLAAQKL 697

Query: 512 IKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVG 571
           + + PD    YV+LSNIYAAAG+W +  EVR++M  +  +K+ G S I+ +  +H F+  
Sbjct: 698 LLLEPDDSATYVLLSNIYAAAGRWKERDEVRKLMDSKKVKKEAGCSWIQIKNKVHSFIAC 757

Query: 572 DKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGL 631
           DKSHP +++I++KL  M  +LK  G+ P+T+ VL  I ++ +KE  L  HSERLA+AFGL
Sbjct: 758 DKSHPLSEQIYAKLKAMTTRLKQEGYCPNTSVVLHDIAEE-QKETMLVMHSERLALAFGL 816

Query: 632 INVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           I    R+P++IVKNLRVC DCH V K++S I +REII+RD SRFHHF  G+CSC DFW
Sbjct: 817 IATPPRTPLQIVKNLRVCGDCHMVMKMVSLIEDREIIMRDCSRFHHFNAGACSCGDFW 874


>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
 gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
          Length = 739

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 223/627 (35%), Positives = 353/627 (56%), Gaps = 19/627 (3%)

Query: 40  LHALSVKTNLIYHSGI-------SSRLLSLYVDPHINN--LHYARSIFDRILQHPSLVLY 90
           LHAL+V ++L    G+        S   ++ +  H N+  +  AR  FD +      V +
Sbjct: 107 LHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFD-LAPEKDAVSW 165

Query: 91  NLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFK 150
           N ++  YV N R  EA  LF    +     D  +   ++ G  + G + E +++    F 
Sbjct: 166 NGMLAAYVRNGRVEEARGLFNSRTEW----DVISWNALMSGYVQWGKMSEAREL----FD 217

Query: 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
              G D    + +VS YA+ G++   RR+FDA   +D+ +W  ++ GY + G +E A ++
Sbjct: 218 RMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRV 277

Query: 211 FDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSAC 270
           FD MP+R+  SW  +V  + +   ++ A+E+F  MP RN+ SWN M+ GY +AG ++ A 
Sbjct: 278 FDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAK 337

Query: 271 ELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLA 330
            +FD M  +D ++W +M+A Y   G   E L+L   M       N +     LS  A +A
Sbjct: 338 AVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIA 397

Query: 331 VLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIV 390
            L  G  +H  +++ G+ V   +G  L+ MY KCG++E A   F  + ++ V  W  MI 
Sbjct: 398 ALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIA 457

Query: 391 GLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIE 450
           G   HG   +AL++F+ M     KP  IT +GVL ACSH+GLV  G  YF  M +D+G+ 
Sbjct: 458 GYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVT 517

Query: 451 PTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANN 510
              EHY C++D+L R G L EA   ++ MP  P+  +W +LL  +R H N ++G  AA  
Sbjct: 518 AKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEK 577

Query: 511 LIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVV 570
           + ++ P+  G YV+LSNIYA++G+W    ++R MM++RG +K PG S IE +  +H F  
Sbjct: 578 IFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSA 637

Query: 571 GDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFG 630
           GD  HP+ ++I++ L ++  ++K AG+V  T  VL  +E++ EKE  L+ HSE+LA+A+G
Sbjct: 638 GDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLHDVEEE-EKEHMLKYHSEKLAVAYG 696

Query: 631 LINVKSRSPIRIVKNLRVCNDCHSVTK 657
           ++N+    PIR++KNLRVC DCH+  K
Sbjct: 697 ILNIPPGRPIRVIKNLRVCGDCHNAFK 723



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 111/449 (24%), Positives = 195/449 (43%), Gaps = 53/449 (11%)

Query: 84  HPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQ 143
            P ++  N  I  ++   R  +A  LF  +  R       T   ++ G +  G +     
Sbjct: 35  EPEVIRSNKAITAHMRAGRVADAERLFAAMPRR----STSTYNAMLAGYSANGRLP---- 86

Query: 144 IHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGE 203
           +   +F+     D +  ++L+   A    +   R +FD M  +D V++N +I  +   G 
Sbjct: 87  LAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGL 146

Query: 204 VEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKA 263
           V +A   FD  P++D  SW  ++  + + G+VE AR +F      +++SWNA+++GY++ 
Sbjct: 147 VSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQW 206

Query: 264 GDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSAL 323
           G +  A ELFD M  RD+++WN M++GY   G  +EA  L +   + DV     T  + +
Sbjct: 207 GKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVF----TWTAVV 262

Query: 324 SAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQM----------------------- 360
           S  A   +L + R +   + +   V    +    IQ                        
Sbjct: 263 SGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNT 322

Query: 361 ----YSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT 416
               Y++ G +E A  VF  + +K    W AM+      G + + L LF +M R G    
Sbjct: 323 MLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVN 382

Query: 417 AITFIGVLNACSHAGLVNDGRRYFNMMIN-DYGIEPTIEHYGCLVD-----ILCRTGYLE 470
              F  VL+ C+    +  G +    +I   YG+       GC V      +  + G +E
Sbjct: 383 RSAFACVLSTCADIAALECGMQLHGRLIRAGYGV-------GCFVGNALLAMYFKCGNME 435

Query: 471 EAKSTIESMPMRPNFVIWMSLLSGARNHG 499
           +A++  E M  R + V W ++++G   HG
Sbjct: 436 DARNAFEEMEER-DVVSWNTMIAGYARHG 463


>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 241/642 (37%), Positives = 363/642 (56%), Gaps = 59/642 (9%)

Query: 91  NLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLV-F 149
           N ++  Y  N +   A  LF  + +R L   N  +          G  K G +   +V F
Sbjct: 134 NAILDMYAKNGQVDLARNLFEQMAERTLADWNSMIS---------GCWKSGNETEAVVLF 184

Query: 150 KLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMK 209
            +    +    +S+V+ YAK G+++  RR FD M ++ +VSWN +   Y +K   + A+ 
Sbjct: 185 NMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALN 244

Query: 210 LFDEM------PDR---------------------------------DLFSWTCLVDGFS 230
           LF +M      PD                                  + F  T L+D  +
Sbjct: 245 LFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHA 304

Query: 231 KCGKVEIAREIFYRM-PNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIA 289
           K G +EIAR IF  +   RN V+WN MI+ Y + G +  A ELFD+M  RD+++WNSMIA
Sbjct: 305 KFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIA 364

Query: 290 GYELNGRFMEALELLETML-IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFV 348
           GY  NG    ++EL + M+   D+ P++ T+ S LSA   +  L    W+   IV+   +
Sbjct: 365 GYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLD-IVREKNI 423

Query: 349 VDGVLG-TLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNK 407
             G+ G   LI MYSKCGS+  A  +F+ +  + V  +  +I G   +G   +A+ L   
Sbjct: 424 KLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLT 483

Query: 408 MCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTG 467
           M   G++P  +T+IGVL ACSHAGL+N+G+  F  +       PT++HY C+VD+L R G
Sbjct: 484 MEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQ-----APTVDHYACMVDLLGRAG 538

Query: 468 YLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSN 527
            L+EAK  I+SMPM+P+  ++ SLL+ +R H    +GE AA+ L ++ P  +G YV+LSN
Sbjct: 539 ELDEAKMLIQSMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVLLSN 598

Query: 528 IYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSE 587
           IYA+ G+W+ V  VREMMKK G +K  G S +E++G +H+F VGD+SH Q+ +I+  L+E
Sbjct: 599 IYASFGRWEDVKRVREMMKKGGLKKSVGMSWVEYKGQVHKFTVGDRSHEQSKDIYKLLAE 658

Query: 588 MRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLR 647
           +  K+K  G V D +  L  +E+++++E  L  HSE+LAI F L+  +  + IR+VKNLR
Sbjct: 659 LERKMKRVGFVADKSCALRDVEEEEKEEM-LGTHSEKLAICFALLISEVGTTIRVVKNLR 717

Query: 648 VCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           +C DCH+  K++S +  REI+VRDN+RFH F  G CSC D+W
Sbjct: 718 ICLDCHTAIKMISKLEGREIVVRDNNRFHCFSEGMCSCHDYW 759



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 132/497 (26%), Positives = 217/497 (43%), Gaps = 44/497 (8%)

Query: 68  INNLHYARSIFDRILQHPSLVLYNLLIKCYVFN-QRSHEALTLFCDLLDRFLLPDNFTLP 126
           I+N+   R  F   L H SL  +N  +   + N  R H        +      PD     
Sbjct: 11  ISNIRQLRQ-FHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSSPSPDASVYS 69

Query: 127 CVIKGAARLGAI------------------------------KEGKQIHGLVFKLGFGFD 156
           C++K  +R+GA                               K G   H  V KLG   D
Sbjct: 70  CMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNMFHAYVLKLGHIDD 129

Query: 157 KFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD 216
            F+ ++++ MYAK G++DL R +F+ M ++ L  WN +I G  K G    A+ LF+ MP 
Sbjct: 130 HFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMPA 189

Query: 217 RDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDM 276
           R++ +WT +V G++K G +E AR  F  MP R++VSWNAM + Y +      A  LF  M
Sbjct: 190 RNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQM 249

Query: 277 E----IRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVL 332
                  D  TW   I+     G    A  +L  +    ++ N     + L   A    L
Sbjct: 250 LEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNL 309

Query: 333 NKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGL 392
              R +   +   G   + V   ++I  Y++ G +  A  +F  + K+ V  W +MI G 
Sbjct: 310 EIARNIFDEL---GSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGY 366

Query: 393 GMHGMATQALDLFNKMCR-MGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP 451
             +G +  +++LF +M   M ++P  +T   VL+AC H G +       + ++ +  I+ 
Sbjct: 367 AQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLD-IVREKNIKL 425

Query: 452 TIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG--ARNHGNKDIGEYAAN 509
            I  +  L+ +  + G + +A    ++M  R + V + +L+SG  A  HG + I      
Sbjct: 426 GISGFNSLIFMYSKCGSVADAHRIFQTMGTR-DVVSFNTLISGFAANGHGKEAIKLVLTM 484

Query: 510 NLIKVAPDTIGCYVVLS 526
               + PD +    VL+
Sbjct: 485 EEEGIEPDHVTYIGVLT 501


>gi|302800114|ref|XP_002981815.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
 gi|300150647|gb|EFJ17297.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
          Length = 637

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 229/641 (35%), Positives = 354/641 (55%), Gaps = 14/641 (2%)

Query: 59  LLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFL 118
           +LS Y    I N+   R  FD  +    +V +N LI  Y+ N+        F  +L + +
Sbjct: 1   MLSAY--SQIGNIPAVRKAFDE-MPVADIVSWNALIAAYIGNRDFDRCWLFFRGMLLQGI 57

Query: 119 LPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRR 178
            P    +   +        I  G+ I   +   G   +  V ++LVSMY K G       
Sbjct: 58  NPGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAAS 117

Query: 179 VFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP-DRDLFSWTCLVDGFSKCGKVEI 237
           VF  M  +D+V+W+ ++  Y + G    A+ LF +M  D    +   LV G   C  +  
Sbjct: 118 VFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGD 177

Query: 238 AR-------EIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAG 290
            R        +  +     +V   A++N Y K G +++A E F  +  ++++ W+++ A 
Sbjct: 178 LRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQIVEKNVVAWSAISAA 237

Query: 291 YELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMH--SYIVKNGFV 348
           Y  N R  +A+ +L  M +  ++PN  T VS L A A +A L +GR +H  + ++  G  
Sbjct: 238 YARNDRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACAAIAALKQGRRIHERTQVLGGGLE 297

Query: 349 VDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKM 408
            D  + T L+ MYSKCG++  A  +F  I+   +  W ++I     HG   +AL+LF +M
Sbjct: 298 SDVYVLTALVNMYSKCGNLALAGDMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFERM 357

Query: 409 CRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGY 468
              G++PT ITF  VL ACSHAG+++ GR++F   I D+GI P  EH+GC+VD+L R G+
Sbjct: 358 RLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFGCMVDLLGRAGW 417

Query: 469 LEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNI 528
           + +++  +  MP  P+ V WM+ L   R + N D   +AA NL ++ P     YV+LSN+
Sbjct: 418 IVDSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDRAIWAAENLFQLDPRKRAPYVLLSNM 477

Query: 529 YAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEM 588
           YA AG+W  V+ +R+ M+     K+ G S IE +  +HEF+ GD  HP+  EIH++L  +
Sbjct: 478 YAKAGRWSDVARMRQAMQLFMTVKEAGRSWIEVKDRVHEFISGDLDHPRIGEIHAELQRL 537

Query: 589 RNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRV 648
              +K AG+VPDT  VL  ++ Q+ KE  +  HSE+LA+AF L+     SPIR+VKNLRV
Sbjct: 538 TKLMKEAGYVPDTEMVLHDVK-QEVKEIMVGYHSEKLAMAFALLTTPEGSPIRVVKNLRV 596

Query: 649 CNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           CNDCH+ +K +S + NREI+VRD +RFH F+NG+CSC D+W
Sbjct: 597 CNDCHTASKFISKLVNREIVVRDCNRFHRFQNGACSCGDYW 637


>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like, partial [Cucumis sativus]
          Length = 735

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 221/607 (36%), Positives = 342/607 (56%), Gaps = 43/607 (7%)

Query: 28  LKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSL 87
           L+   +  + +Q+ +   +  L       ++L++   D  + NL YA  IF+ + Q PSL
Sbjct: 104 LRNCKSMDQLKQIQSQIFRIGLEGDRDTINKLMAFCADSSLGNLRYAEKIFNYV-QDPSL 162

Query: 88  VLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGL 147
            +YN+++K Y       + L LF  L +  L PD FT P V+K    L  +++G+++ G 
Sbjct: 163 FVYNVMVKIYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGF 222

Query: 148 VFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVA 207
           + K G   D +V +SL+ MY +   ++  +++FD M  +D VSWN +I GYV+    E A
Sbjct: 223 IVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDA 282

Query: 208 MKLFDEM-------PD---------------------------RDLFSWT-----CLVDG 228
           +  F EM       PD                           R    +T      L+D 
Sbjct: 283 INTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFTTRIDNALLDM 342

Query: 229 FSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMI 288
           ++KCG + IAR IF  M  +N++ W +MI+GY+  GD+  A +LFD   +RD++ W +MI
Sbjct: 343 YAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMI 402

Query: 289 AGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFV 348
            GY     F +A+ L   M I  + P+  T+V+ L+  A L  L +G+W+H Y+ +N   
Sbjct: 403 NGYVQFHHFDDAVALFREMQIQKIKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRIT 462

Query: 349 VDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKM 408
           +D V+GT LI+MYSKCG ++ +L +F  +  K    WT++I GL M+G  ++AL LF++M
Sbjct: 463 MDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEM 522

Query: 409 CRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGY 468
            R+G KP  ITFIGVL+ACSH GLV +GRR+FN M   + IEP +EHYGC++D+L R G 
Sbjct: 523 ERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRAGL 582

Query: 469 LEEAKSTIESMPMRPNFVI---WMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVL 525
           L+EA+  I+ +P+    ++   + +LLS  R H N D+GE  A  L  +       + +L
Sbjct: 583 LDEAEELIQEIPIENCEIVVPLYGALLSACRIHNNVDMGERLAKKLENIESCDSSIHTLL 642

Query: 526 SNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKL 585
           +NIYA+  +W+   +VR  MK+ G +K PG S IE  G++HEF+VGD SHP+  EI S L
Sbjct: 643 ANIYASVDRWEDAKKVRRKMKELGVKKMPGCSLIEVDGIVHEFLVGDPSHPEMIEICSML 702

Query: 586 SEMRNKL 592
           + +  +L
Sbjct: 703 NRVTGQL 709


>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/564 (38%), Positives = 328/564 (58%), Gaps = 11/564 (1%)

Query: 137 AIKEGKQIHGLVFKLGFGFDKFVLSSLV---SMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
           +++E KQ+     K     D  VL+  +   S+      +     +FD +   D+V +N 
Sbjct: 32  SLRELKQLQAFAIKTHLHSDLSVLTKFINFCSLNPTTTSMQHAHHLFDQIPQPDIVLFNT 91

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDRDLF----SWTCLVDGFSKCGKVEIAREIFYRMP--- 246
           +  GY +      A  LF ++    LF    ++  L+   + C  +E  R++        
Sbjct: 92  MARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKACASCKALEEGRQLHCLAIKLG 151

Query: 247 -NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLE 305
            + N+     +IN Y    ++D A  +FD +    ++T+N+MI GY    R  EAL L  
Sbjct: 152 LSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAMITGYARGSRPNEALSLFR 211

Query: 306 TMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCG 365
            +   ++ P D T++S LS+ A L  L+ G+WMH Y+ KNGF     + T LI MY+KCG
Sbjct: 212 ELQARNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKKNGFNRFVKVDTALIDMYAKCG 271

Query: 366 SIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN 425
           S++ A+ VF  ++ +    W+AMI+   +HG   +A+ LF +M + G +P  ITF+G+L 
Sbjct: 272 SLDDAVCVFENMAVRDTQAWSAMIMAYAIHGHGLKAVSLFKEMRKAGTEPDEITFLGLLY 331

Query: 426 ACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNF 485
           ACSH GLV +G  YF  M + YG+ P I+HYGC+VD+L R G LEEA   I  +P+RP  
Sbjct: 332 ACSHTGLVEEGFEYFYGMRDKYGVIPGIKHYGCMVDLLGRAGRLEEAYEFIVGLPIRPTP 391

Query: 486 VIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMM 545
           ++W +LLS   +HGN ++G+     + ++     G Y++LSN+ A AG+W+ V+ VR++M
Sbjct: 392 ILWRTLLSACGSHGNVELGKRVIEQIFELDDSHGGDYIILSNLCARAGRWEDVNYVRKLM 451

Query: 546 KKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVL 605
            +RG  K PG SS+E   V+HEF  GD  H  + ++H  L E+  +LK  G+VP+T+ V 
Sbjct: 452 NERGVVKIPGCSSVEVNNVVHEFFSGDGVHSVSTKLHQALDELVKELKLVGYVPNTSLVF 511

Query: 606 LCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNR 665
               + +EKE  L  HSE+LAI FGL+N    + IR+VKNLRVC DCHS  KL+S I++R
Sbjct: 512 HADMEDEEKEVTLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCGDCHSAAKLISLIFDR 571

Query: 666 EIIVRDNSRFHHFKNGSCSCKDFW 689
           +II+RD  RFHHFK+G CSC+D+W
Sbjct: 572 QIILRDVQRFHHFKDGKCSCEDYW 595



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 114/422 (27%), Positives = 208/422 (49%), Gaps = 43/422 (10%)

Query: 26  NILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSL-YVDPHINNLHYARSIFDRILQH 84
           ++L   ++ +E +QL A ++KT+L     + ++ ++   ++P   ++ +A  +FD+I Q 
Sbjct: 25  SLLPKCTSLRELKQLQAFAIKTHLHSDLSVLTKFINFCSLNPTTTSMQHAHHLFDQIPQ- 83

Query: 85  PSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQI 144
           P +VL+N + + Y        A TLF  +L   L PD++T P ++K  A   A++EG+Q+
Sbjct: 84  PDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKACASCKALEEGRQL 143

Query: 145 HGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEV 204
           H L  KLG   + +V  +L++MY    E+D  RRVFD + +  +V++N +I GY +    
Sbjct: 144 HCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAMITGYARGSRP 203

Query: 205 EVAMKLFDEMPDRDLFSW-TCLVDGFSKC---GKVEIAREIFYRMP----NRNLVSWNAM 256
             A+ LF E+  R+L      ++   S C   G +++ + +   +     NR +    A+
Sbjct: 204 NEALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKKNGFNRFVKVDTAL 263

Query: 257 INGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPND 316
           I+ Y K G +D A  +F++M +RD   W++MI  Y ++G  ++A+ L + M      P++
Sbjct: 264 IDMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYAIHGHGLKAVSLFKEMRKAGTEPDE 323

Query: 317 ATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRA 376
            T +  L A +           H+ +V+ GF            M  K G I         
Sbjct: 324 ITFLGLLYACS-----------HTGLVEEGF-------EYFYGMRDKYGVIPG------- 358

Query: 377 ISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDG 436
                + H+  M+  LG  G   +A +    +  + ++PT I +  +L+AC   G V  G
Sbjct: 359 -----IKHYGCMVDLLGRAGRLEEAYEF---IVGLPIRPTPILWRTLLSACGSHGNVELG 410

Query: 437 RR 438
           +R
Sbjct: 411 KR 412


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 236/697 (33%), Positives = 363/697 (52%), Gaps = 82/697 (11%)

Query: 71  LHYARSIFDRIL-QHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDR-FLLPDNFTLPCV 128
           L  A + FD +       VL+N ++  +     +  A+++F  LL    L PD+++   +
Sbjct: 108 LRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTAL 167

Query: 129 IKGAARLG--AIKEGKQIHGLVFKLGFGF------------------------------- 155
           I    ++   A     Q+H  V K G                                  
Sbjct: 168 ISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEM 227

Query: 156 ---DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFD 212
              D    +++V  Y + G+++  R VF+ +D K  V WN +I GYV+ G    A +LF 
Sbjct: 228 PDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFR 287

Query: 213 EMPDR----DLFSWT---------------------------------------CLVDGF 229
            M       D F++T                                        LV  +
Sbjct: 288 RMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLY 347

Query: 230 SKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIA 289
           SK GK+ IA+ IF  M  +++VSWN +++GY+ +G +D A E+F  M  ++ ++W  M++
Sbjct: 348 SKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVS 407

Query: 290 GYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVV 349
           GY   G   +AL+L   M   DV P D T   A++A   L  L  GR +H+++V+ GF  
Sbjct: 408 GYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEA 467

Query: 350 DGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMC 409
               G  L+ MY+KCG++  A  VF  +       W AMI  LG HG   +AL+LF++M 
Sbjct: 468 SNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMV 527

Query: 410 RMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYL 469
             G+ P  I+F+ +L AC+HAGLV++G  YF  M  D+GI P  +HY  L+D+L R+G +
Sbjct: 528 AEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRI 587

Query: 470 EEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIY 529
            EA+  I++MP  P   IW ++LSG R +G+ + G YAA+ L ++ P   G Y++LSN Y
Sbjct: 588 GEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTY 647

Query: 530 AAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMR 589
           +AAG+W   + VR++M+ RG +K+PG S IE    +H F+VGD  HP+  E++  L  + 
Sbjct: 648 SAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVIG 707

Query: 590 NKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVC 649
            +++  G+VPDT  VL  +E   EKE  L  HSE+LA+ FGL+ +   + + ++KNLR+C
Sbjct: 708 ARMRKLGYVPDTKFVLHDMEPH-EKEYILFAHSEKLAVGFGLLKLPPGATVTVLKNLRIC 766

Query: 650 NDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCK 686
            DCH+    +S    REI+VRD  RFHHFK+G CSC+
Sbjct: 767 GDCHTAMMFMSKAVGREIVVRDVRRFHHFKDGECSCE 803



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 106/427 (24%), Positives = 193/427 (45%), Gaps = 48/427 (11%)

Query: 69  NNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCV 128
            +++ ARS+F+ +      V++N +I  YV +    +A  LF  ++   +  D FT   V
Sbjct: 246 GDVNAARSVFEEV-DGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSV 304

Query: 129 IKGAARLGAIKEGKQIHGLVFKLGFGFDK----FVLSSLVSMYAKFGEIDLGRRVFDAMD 184
           +   A  G    GK +HG + +L   F       V ++LV++Y+K G+I + +R+FD M+
Sbjct: 305 LSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMN 364

Query: 185 DKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYR 244
            KD+VSWN ++ GY+  G ++ A+++F  MP ++  SW  +V G+   G  E A ++F +
Sbjct: 365 LKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQ 424

Query: 245 MPNRNL---------------------------------------VSWNAMINGYMKAGD 265
           M   ++                                        + NA++  Y K G 
Sbjct: 425 MRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGA 484

Query: 266 VDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSA 325
           V+ A  +F  M   D ++WN+MI+    +G   EALEL + M+   + P+  + ++ L+A
Sbjct: 485 VNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTA 544

Query: 326 VAGLAVLNKG-RWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGH 384
                ++++G  +  S     G          LI +  + G I  A  + + +  +    
Sbjct: 545 CNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPS 604

Query: 385 -WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMM 443
            W A++ G   +G         +++ RM +     T+I + N  S AG   D  R   +M
Sbjct: 605 IWEAILSGCRTNGDMEFGAYAADQLFRM-IPQHDGTYILLSNTYSAAGRWVDAARVRKLM 663

Query: 444 INDYGIE 450
             D G++
Sbjct: 664 -RDRGVK 669



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 132/294 (44%), Gaps = 49/294 (16%)

Query: 59  LLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFL 118
           +LS Y+D     L  A  +F +++ + + + + +++  YV    S +AL LF  +    +
Sbjct: 374 ILSGYIDS--GCLDKAVEVF-KVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDV 430

Query: 119 LPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRR 178
            P ++T    I     LGA+K G+Q+H  + + GF       ++L++MYAK G ++  R 
Sbjct: 431 KPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARL 490

Query: 179 VFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDRDLF------------ 220
           VF  M + D VSWN +I    + G    A++LFD+M      PDR  F            
Sbjct: 491 VFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGL 550

Query: 221 ----------------------SWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS-WNAMI 257
                                  +  L+D   + G++  AR++   MP     S W A++
Sbjct: 551 VDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAIL 610

Query: 258 NGYMKAGDVD----SACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETM 307
           +G    GD++    +A +LF  +   D  T+  +   Y   GR+++A  + + M
Sbjct: 611 SGCRTNGDMEFGAYAADQLFRMIPQHDG-TYILLSNTYSAAGRWVDAARVRKLM 663



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/315 (23%), Positives = 125/315 (39%), Gaps = 47/315 (14%)

Query: 244 RMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEI--RDLITWNSMIAGYELNGRFMEAL 301
           R P R      +++     AG +  A   FD +    RD +  N+M++ +        A+
Sbjct: 86  RTPTRAPSPATSLVAAQAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAV 145

Query: 302 ELLETML-IGDVLPNDATLVSALSAVAGLAVLNKGR--WMHSYIVKNGFVVDGVLGTLLI 358
            +   +L  G + P+D +  + +SAV  +  L       +H  ++K+G      +   LI
Sbjct: 146 SVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALI 205

Query: 359 QMYSKC----------------------------------GSIESALTVFRAISKKKVGH 384
            +Y KC                                  G + +A +VF  +  K    
Sbjct: 206 ALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVV 265

Query: 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMI 444
           W AMI G    GM   A +LF +M    +     TF  VL+AC++AG    G+     +I
Sbjct: 266 WNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQII 325

Query: 445 N---DYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNK 501
               ++  E  +     LV +  + G +  AK   ++M ++ + V W ++LSG  + G  
Sbjct: 326 RLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLK-DVVSWNTILSGYIDSGCL 384

Query: 502 DIGEYAANNLIKVAP 516
           D     A  + KV P
Sbjct: 385 D----KAVEVFKVMP 395


>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
 gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
          Length = 635

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/585 (36%), Positives = 335/585 (57%), Gaps = 10/585 (1%)

Query: 113 LLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGE 172
           LL   L P       +I   A+   +   + IH  + +     D F+L+SL+ MY K G 
Sbjct: 53  LLTGELAPTPRVYHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCGA 112

Query: 173 IDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDG 228
           +   R VFD +  +D+VSW  LI GY +      A+ L  +M         F++T  +  
Sbjct: 113 VSDARHVFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKA 172

Query: 229 FSKCGKVEIAREIFYRMPNRNL----VSWNAMINGYMKAGDVDSACELFDDMEIRDLITW 284
              CG   I  ++       NL       +A+++ Y +   +D A  +FD ++ ++ ++W
Sbjct: 173 AGACGGRGIGEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVSW 232

Query: 285 NSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVK 344
           N++IAG+   G     L     M          T  S  SA+A +  L +GRW+H++++K
Sbjct: 233 NALIAGFARKGDGETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQGRWVHAHMIK 292

Query: 345 NGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDL 404
           +G  +   +   ++ MY+K GS+  A  VF  + ++ +  W  M+     +G+  +A+  
Sbjct: 293 SGQKLTAFVANTILGMYAKSGSMVDARKVFDRVDQRDLVTWNTMLTAFAQYGLGKEAVAH 352

Query: 405 FNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILC 464
           F ++ + G++   ITF+ VL ACSH GLV +G++YF+MM  DY +EP I+HY   VD+L 
Sbjct: 353 FEEIRKYGIQLNQITFLSVLTACSHGGLVKEGKQYFDMM-KDYNVEPEIDHYVSFVDLLG 411

Query: 465 RTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVV 524
           R G L+EA   +  MPM P   +W +LL   R H N  IG+YAA+++ ++ P+  G  V+
Sbjct: 412 RAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKIGQYAADHVFELDPEDTGPPVL 471

Query: 525 LSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSK 584
           L NIYA+ GQWD  + VR+MMK  G +K+P  S +E    +H FV  D +HP+++EI+  
Sbjct: 472 LYNIYASTGQWDDAARVRKMMKATGVKKEPACSWVEIENSVHMFVADDSTHPKSEEIYRM 531

Query: 585 LSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVK 644
             E+  ++K AG+VP+T  VLL I++Q E+E +L+ HSE++A+AF LIN+ + + IRI+K
Sbjct: 532 WEEVNTRIKKAGYVPNTDYVLLHIKEQ-ERETKLQYHSEKIALAFALINMPAGATIRIMK 590

Query: 645 NLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           N+R+C DCHS  + +S ++ REI+VRD +RFHHF NGSCSC D+W
Sbjct: 591 NIRICGDCHSAFRYVSEVFKREIVVRDTNRFHHFSNGSCSCGDYW 635



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 107/389 (27%), Positives = 173/389 (44%), Gaps = 52/389 (13%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           AR +FD I     +V +  LI  Y  N    EAL L  D+L     P  FT    +K A 
Sbjct: 116 ARHVFDGIPTR-DVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKAAG 174

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
             G    G+Q+H L  K     D +V S+L+ MYA+  ++D+  RVFD +D K+ VSWN 
Sbjct: 175 ACGGRGIGEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVSWNA 234

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRM--PN 247
           LI G+ +KG+ E  +  F EM         F+++ +    ++ G +E  R +   M    
Sbjct: 235 LIAGFARKGDGETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQGRWVHAHMIKSG 294

Query: 248 RNLVSW--NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLE 305
           + L ++  N ++  Y K+G +  A ++FD ++ RDL+TWN+M+  +   G   EA+   E
Sbjct: 295 QKLTAFVANTILGMYAKSGSMVDARKVFDRVDQRDLVTWNTMLTAFAQYGLGKEAVAHFE 354

Query: 306 TMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCG 365
            +    +  N  T +S L+A +           H  +VK G     ++    ++      
Sbjct: 355 EIRKYGIQLNQITFLSVLTACS-----------HGGLVKEGKQYFDMMKDYNVE------ 397

Query: 366 SIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN 425
                          ++ H+ + +  LG  G+  +AL    K   M M+PTA  +  +L 
Sbjct: 398 --------------PEIDHYVSFVDLLGRAGLLKEALIFVFK---MPMEPTAAVWGALLG 440

Query: 426 ACSHAGLVNDGRRYFNMMINDYGIEPTIE 454
           AC         R + N  I  Y  +   E
Sbjct: 441 AC---------RMHKNAKIGQYAADHVFE 460



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 92/203 (45%), Gaps = 2/203 (0%)

Query: 300 ALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQ 359
            L  L+ +L G++ P      S ++A A    L   R +HS++ ++    DG L   LI 
Sbjct: 46  GLRELDLLLTGELAPTPRVYHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIH 105

Query: 360 MYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAIT 419
           MY KCG++  A  VF  I  + V  WT +I G   + M  +AL L   M R   +P+  T
Sbjct: 106 MYCKCGAVSDARHVFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFT 165

Query: 420 FIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM 479
           F   L A    G    G +   + +  Y ++  +     L+D+  R   ++ A    + +
Sbjct: 166 FTSFLKAAGACGGRGIGEQMHALAVK-YNLDEDVYVGSALLDMYARCQQMDMAIRVFDWL 224

Query: 480 PMRPNFVIWMSLLSGARNHGNKD 502
             + N V W +L++G    G+ +
Sbjct: 225 DSK-NEVSWNALIAGFARKGDGE 246


>gi|357111691|ref|XP_003557645.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Brachypodium distachyon]
          Length = 598

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 217/515 (42%), Positives = 313/515 (60%), Gaps = 9/515 (1%)

Query: 183 MDDKDLVSWNCLIDGYVKKGEVEVAMKLFDE-MPDRDLFSWTCLVDGFSKCGKVEIAREI 241
           +   D  S N ++  +       VA+ L    +   D  ++  L+   ++   +     +
Sbjct: 85  LPSPDPFSLNTVLRIFASSARPRVALALHRRHLAPPDTHTYPPLLQACARLLALRYGEGL 144

Query: 242 FYRMPNRNLVSW----NAMINGYMKAGDVDSACELFDDMEI--RDLITWNSMIAGYELNG 295
                   LVS     N++++ Y   G  +SA  +FD++    R+L++WNS++ G+  NG
Sbjct: 145 HAEACKNGLVSLVFVKNSLVHLYGACGLFESAHRVFDEIPPPERNLVSWNSVLNGFAANG 204

Query: 296 RFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGT 355
           R  E L +   ML  +  P+  T+VS L+A A + VL  GR +H ++ K G V +   G 
Sbjct: 205 RPNEVLTVFREMLEVEFAPDGFTVVSVLTACAEIGVLALGRRVHVFVAKVGLVGNAHAGN 264

Query: 356 LLIQMYSKCGSIESALTVFRAIS-KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMK 414
            LI +Y+KCG ++ A  +F  +   + V  WT++IVGL ++G    AL LF+ M R  + 
Sbjct: 265 ALIDLYAKCGGVDDARKMFGEMGVGRTVVSWTSLIVGLAVNGFGMDALQLFSMMEREKLM 324

Query: 415 PTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKS 474
           PT IT +GVL ACSH GLV+DG RYF+ M  +YGI P IEH GC+VD+L R G +EEA +
Sbjct: 325 PTEITMVGVLYACSHCGLVDDGFRYFDQMKAEYGITPRIEHLGCMVDLLGRAGRVEEAHN 384

Query: 475 TIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQ 534
            I +MP+ PN V+W +LL     H   +IGE A   L+++ P   G YV+LSN+YA  G+
Sbjct: 385 YITTMPLEPNAVVWRTLLGACAMHKKLEIGEAAWARLVELDPGHSGDYVLLSNLYAGVGR 444

Query: 535 WDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKA 594
           W  V  +R+ M   G RK+PG S +E R  ++EFV+GD+SHP+TD+I+  L ++  +L+ 
Sbjct: 445 WADVHVLRKTMVTHGVRKNPGHSLVELRNSVYEFVMGDRSHPETDQIYEMLGDIAERLRR 504

Query: 595 AGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHS 654
            G++P T+ VL  IED+ EKE+ L  HSERLAIAF L+     +PIRIVKNLRVC DCH 
Sbjct: 505 QGYIPHTSNVLADIEDE-EKESALNYHSERLAIAFALLKSLPGTPIRIVKNLRVCGDCHM 563

Query: 655 VTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
             KL+S +Y+REIIVRD SRFHHFK G+CSCKD+W
Sbjct: 564 AIKLISKVYDREIIVRDRSRFHHFKGGACSCKDYW 598



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 106/412 (25%), Positives = 185/412 (44%), Gaps = 50/412 (12%)

Query: 31  SSTHKETQQLHALSVKTN---LIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSL 87
           S +    +QLHA +++        H  ++  LL          L YA ++   +L  P  
Sbjct: 31  SPSLATAKQLHARALRAAPGVTPSHPLLAKHLLFHLAALKAPPLRYAVAVLSGLLPSPDP 90

Query: 88  VLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGL 147
              N +++ +  + R   AL L    L     PD  T P +++  ARL A++ G+ +H  
Sbjct: 91  FSLNTVLRIFASSARPRVALALHRRHLAP---PDTHTYPPLLQACARLLALRYGEGLHAE 147

Query: 148 VFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAM--DDKDLVSWNCLIDGYVKKGEVE 205
             K G     FV +SLV +Y   G  +   RVFD +   +++LVSWN +++G+   G   
Sbjct: 148 ACKNGLVSLVFVKNSLVHLYGACGLFESAHRVFDEIPPPERNLVSWNSVLNGFAANGRPN 207

Query: 206 VAMKLFDEMPD----RDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLV----SWNAMI 257
             + +F EM +     D F+   ++   ++ G + + R +   +    LV    + NA+I
Sbjct: 208 EVLTVFREMLEVEFAPDGFTVVSVLTACAEIGVLALGRRVHVFVAKVGLVGNAHAGNALI 267

Query: 258 NGYMKAGDVDSACELFDDMEI-RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPND 316
           + Y K G VD A ++F +M + R +++W S+I G  +NG  M+AL+L   M    ++P +
Sbjct: 268 DLYAKCGGVDDARKMFGEMGVGRTVVSWTSLIVGLAVNGFGMDALQLFSMMEREKLMPTE 327

Query: 317 ATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRA 376
            T+V  L A +           H  +V +GF           QM ++ G           
Sbjct: 328 ITMVGVLYACS-----------HCGLVDDGF-------RYFDQMKAEYG----------- 358

Query: 377 ISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACS 428
               ++ H   M+  LG  G   +A    N +  M ++P A+ +  +L AC+
Sbjct: 359 -ITPRIEHLGCMVDLLGRAGRVEEA---HNYITTMPLEPNAVVWRTLLGACA 406



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 148/330 (44%), Gaps = 26/330 (7%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQ-HPSLVLYNLLIKC 96
           + LHA + K  L+    + + L+ LY          A  +FD I     +LV +N ++  
Sbjct: 142 EGLHAEACKNGLVSLVFVKNSLVHLYGA--CGLFESAHRVFDEIPPPERNLVSWNSVLNG 199

Query: 97  YVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFD 156
           +  N R +E LT+F ++L+    PD FT+  V+   A +G +  G+++H  V K+G   +
Sbjct: 200 FAANGRPNEVLTVFREMLEVEFAPDGFTVVSVLTACAEIGVLALGRRVHVFVAKVGLVGN 259

Query: 157 KFVLSSLVSMYAKFGEIDLGRRVFDAMD-DKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP 215
               ++L+ +YAK G +D  R++F  M   + +VSW  LI G    G    A++LF  M 
Sbjct: 260 AHAGNALIDLYAKCGGVDDARKMFGEMGVGRTVVSWTSLIVGLAVNGFGMDALQLFSMME 319

Query: 216 DRDLFSWTCLVDGF----SKCGKVEIAREIFYRMPNRNLVS-----WNAMINGYMKAGDV 266
              L      + G     S CG V+     F +M     ++        M++   +AG V
Sbjct: 320 REKLMPTEITMVGVLYACSHCGLVDDGFRYFDQMKAEYGITPRIEHLGCMVDLLGRAGRV 379

Query: 267 DSACELFDDMEIR-DLITWNSMIAGYELNGRFMEALELLETMLIGDVLP---NDATLVSA 322
           + A      M +  + + W +++    ++ + +E  E     L+ ++ P    D  L+S 
Sbjct: 380 EEAHNYITTMPLEPNAVVWRTLLGACAMHKK-LEIGEAAWARLV-ELDPGHSGDYVLLSN 437

Query: 323 LSAVAGLAVLNKGRWMHSYIVKNGFVVDGV 352
           L A         GRW   ++++   V  GV
Sbjct: 438 LYA-------GVGRWADVHVLRKTMVTHGV 460


>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/561 (39%), Positives = 337/561 (60%), Gaps = 10/561 (1%)

Query: 137 AIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLID 196
           A+  GKQ+H   + LG  +++ + + LV +YA    +   R +FD +  ++L  WN LI 
Sbjct: 62  ALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLNARNLFDKIPKQNLFLWNVLIR 121

Query: 197 GYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIF-YRMPN---R 248
           GY   G  + A+ L+ +M D  L    F+   ++   S    +   R I  Y + +   R
Sbjct: 122 GYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSAIGEGRSIHEYVIKSGWER 181

Query: 249 NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETML 308
           +L    A+I+ Y K G V  A  +FD + +RD + WNSM+A Y  NG   E++ L   M 
Sbjct: 182 DLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQNGHPDESISLCREMA 241

Query: 309 IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIE 368
              V P +ATLV+ +S+ A +A L  GR +H +  ++GF  +  + T LI MY+KCGS++
Sbjct: 242 ANGVRPTEATLVTVISSSADVACLPYGREIHGFGWRHGFQSNDKVKTALIDMYAKCGSVK 301

Query: 369 SALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACS 428
            AL +F  + +K+V  W A+I G  MHG+A  ALDLF+KM R   +P  ITF+GVL ACS
Sbjct: 302 VALALFERLREKRVVSWNAIITGYAMHGLAVGALDLFDKM-RKEDRPDHITFVGVLAACS 360

Query: 429 HAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIW 488
              L+++GR  +N+M+ DYGI PT++HY C++D+L   G L+EA   I +M ++P+  +W
Sbjct: 361 RGRLLDEGRALYNLMVRDYGITPTVQHYTCMIDLLGHCGQLDEAYDLIRNMSVKPDSGVW 420

Query: 489 MSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548
            +LL+  + HGN ++ E A   LI++ PD  G YV+L+N+YA +G+W+ V ++R++M  +
Sbjct: 421 GALLNSCKIHGNVELAELALEKLIELEPDDSGNYVILANMYAQSGKWEGVEKLRQVMIDK 480

Query: 549 GFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCI 608
             +K+   S IE +  ++ F+ GD SH  +D I+++L  +   +  AG+ PDT  V   +
Sbjct: 481 RIKKNIACSWIEVKNKVYAFLAGDVSHSNSDAIYAELKRLEGLMHEAGYAPDTGSVFHDV 540

Query: 609 EDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREII 668
           E + EK + + +HSERLAIAFGLI+    + + I KNLR+C DCH   K +S I  REI 
Sbjct: 541 E-EDEKTSMVCSHSERLAIAFGLISTSPGTRLLITKNLRICEDCHVAIKFISKIMEREIT 599

Query: 669 VRDNSRFHHFKNGSCSCKDFW 689
           VRD +R+H FK+G CSC D W
Sbjct: 600 VRDVNRYHSFKHGMCSCGDHW 620



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 118/400 (29%), Positives = 189/400 (47%), Gaps = 76/400 (19%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +QLHA      + Y+  ++++L+ LY     N+L  AR++FD+I +  +L L+N+LI+ Y
Sbjct: 67  KQLHAQFYHLGIAYNQDLATKLVHLYAVS--NSLLNARNLFDKIPKQ-NLFLWNVLIRGY 123

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
            +N     A+ L+  +LD  L PDNFTLP V+K  + L AI EG+ IH  V K G+  D 
Sbjct: 124 AWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSAIGEGRSIHEYVIKSGWERDL 183

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
           FV ++L+ MYAK G +    RVFD +  +D V WN ++  Y + G  + ++ L  EM   
Sbjct: 184 FVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQNGHPDESISLCREMAAN 243

Query: 218 DL----------------------------FSW-----------TCLVDGFSKCGKVEIA 238
            +                            F W           T L+D ++KCG V++A
Sbjct: 244 GVRPTEATLVTVISSSADVACLPYGREIHGFGWRHGFQSNDKVKTALIDMYAKCGSVKVA 303

Query: 239 REIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFM 298
             +F R+  + +VSWNA+I GY   G    A +LFD M   D                  
Sbjct: 304 LALFERLREKRVVSWNAIITGYAMHGLAVGALDLFDKMRKED------------------ 345

Query: 299 EALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLG-TLL 357
                          P+  T V  L+A +   +L++GR +++ +V++  +   V   T +
Sbjct: 346 --------------RPDHITFVGVLAACSRGRLLDEGRALYNLMVRDYGITPTVQHYTCM 391

Query: 358 IQMYSKCGSIESALTVFRAIS-KKKVGHWTAMIVGLGMHG 396
           I +   CG ++ A  + R +S K   G W A++    +HG
Sbjct: 392 IDLLGHCGQLDEAYDLIRNMSVKPDSGVWGALLNSCKIHG 431



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 96/215 (44%), Gaps = 5/215 (2%)

Query: 291 YELNGRFMEALELLETMLIGDVLPNDAT---LVSALSAVAGLAVLNKGRWMHSYIVKNGF 347
           +  +  F  +L   +T  +    P   T     S L +      LN G+ +H+     G 
Sbjct: 19  FPFSQSFYHSLATHQTASVDSFPPQPTTHYGYTSLLQSCIDSKALNPGKQLHAQFYHLGI 78

Query: 348 VVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNK 407
             +  L T L+ +Y+   S+ +A  +F  I K+ +  W  +I G   +G    A+ L++K
Sbjct: 79  AYNQDLATKLVHLYAVSNSLLNARNLFDKIPKQNLFLWNVLIRGYAWNGPHDNAIILYHK 138

Query: 408 MCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTG 467
           M   G++P   T   VL ACS    + +GR     +I   G E  +     L+D+  + G
Sbjct: 139 MLDYGLRPDNFTLPFVLKACSALSAIGEGRSIHEYVIKS-GWERDLFVGAALIDMYAKCG 197

Query: 468 YLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKD 502
            + +A    + + +R + V+W S+L+    +G+ D
Sbjct: 198 CVMDAGRVFDKIVVR-DAVLWNSMLAAYAQNGHPD 231


>gi|297828249|ref|XP_002882007.1| hypothetical protein ARALYDRAFT_483672 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297327846|gb|EFH58266.1| hypothetical protein ARALYDRAFT_483672 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 606

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 234/590 (39%), Positives = 335/590 (56%), Gaps = 47/590 (7%)

Query: 26  NILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNL-HYARSIFDRI--- 81
            +L    T  +  ++H   +KT +I +S +++R++  +       L  +AR +F      
Sbjct: 10  QVLGSCKTSYDVNKIHGGLIKTGIIKNSNLTTRIVLAFAASRRPYLAEFARCVFHEYHVC 69

Query: 82  ------LQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARL 135
                 ++ P   L+N +IK +   +   +AL LFC +L+  +  D F+L  V+K  +RL
Sbjct: 70  SFSPGEMEDP--FLWNAVIKSHSHGKDPRQALLLFCLMLENGVSVDKFSLSLVLKACSRL 127

Query: 136 GAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLI 195
           G +K G QIHG + K G   D F+ + L+ +Y K G +   R++FD M  +D VS+N +I
Sbjct: 128 GFVKGGMQIHGFLRKTGLWSDLFLQNCLIGLYLKCGCLGFARQMFDRMPQRDSVSYNSMI 187

Query: 196 DGYVKKGEVE----------------------------------VAMKLFDEMPDRDLFS 221
           +GYVK G +E                                  +A KLF EMP++DL S
Sbjct: 188 NGYVKCGLIESARELFDLMPREMKNLISWNSMISGYAQTSEGVNIASKLFAEMPEKDLIS 247

Query: 222 WTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDL 281
           W  ++DG+ K G++E A+ +F  MP R++V+   MI+GY K G V  A  LFD M +RD+
Sbjct: 248 WNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTCATMIDGYAKLGFVHQAKTLFDQMPLRDV 307

Query: 282 ITWNSMIAGYELNGRFMEALELLETMLIGDVL-PNDATLVSALSAVAGLAVLNKGRWMHS 340
           + +NSM+AGY  N   MEALE+   M     L P++ TLV  LSA+A L  L+K   MH 
Sbjct: 308 VAYNSMMAGYVQNKCHMEALEIFNDMEKESHLSPDETTLVIILSAIAQLGRLSKATDMHL 367

Query: 341 YIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQ 400
           YIV+  F + G LG  LI MYSKCGSI+ A+ VF  I  K + HW AMI GL +HG+   
Sbjct: 368 YIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAVHGLGES 427

Query: 401 ALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLV 460
           A ++  ++ R+ + P  ITF+GVLNACSH+GLV +G   F +M   + IEP ++HYGC+V
Sbjct: 428 AFNMLLQIERLSIIPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMV 487

Query: 461 DILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIG 520
           DIL R+G +E AK+ IE MP+ PN VIW + L+   +H   + GE  A +LI  A     
Sbjct: 488 DILSRSGSIELAKNLIEEMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAGYNPS 547

Query: 521 CYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVV 570
            YV+LSN+YA+ G W  V  VR MMK+R   K PG S IE  G +HEF V
Sbjct: 548 SYVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCSWIELDGRVHEFFV 597


>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Glycine max]
          Length = 854

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 250/696 (35%), Positives = 368/696 (52%), Gaps = 85/696 (12%)

Query: 30  FSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVL 89
           F S  + T+ +  +S    L+  +  SSR  S  V+  + + HY     + +L H     
Sbjct: 208 FDSLVQRTEPMRGVSKHLQLLRPT--SSRCCSYSVNSSLVSPHYVPPETESLLNH----- 260

Query: 90  YNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVF 149
                 CY  +  S  A+ +   +  R +  D+ T   +IK     GA++EGK++H  +F
Sbjct: 261 ------CYRRDLPS--AMHVLDSMERRGVWADSITYSELIKCCLAHGAVREGKRVHRHIF 312

Query: 150 KLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMK 209
             G+    F+                                N LI+ YVK   +E A  
Sbjct: 313 SNGYHPKTFLT-------------------------------NILINMYVKFNLLEEAQV 341

Query: 210 LFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIF---YR---MPN---------------- 247
           LFD+MP+R++ SWT ++  +S     + A  +    +R   MPN                
Sbjct: 342 LFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMFTFSSVLRACERLYD 401

Query: 248 -RNLVSW-------------NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYEL 293
            + L SW             +A+I+ Y K G++  A ++F +M   D + WNS+IA +  
Sbjct: 402 LKQLHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFREMMTGDSVVWNSIIAAFAQ 461

Query: 294 NGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVL 353
           +    EAL L ++M       + +TL S L A   L++L  GR  H +++K  F  D +L
Sbjct: 462 HSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELGRQAHVHVLK--FDQDLIL 519

Query: 354 GTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGM 413
              L+ MY KCGS+E A  +F  ++KK V  W+ MI GL  +G + +AL+LF  M   G 
Sbjct: 520 NNALLDMYCKCGSLEDAKFIFNRMAKKDVISWSTMIAGLAQNGFSMEALNLFESMKVQGP 579

Query: 414 KPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAK 473
           KP  IT +GVL ACSHAGLVN+G  YF  M N YGI+P  EHYGC++D+L R   L++  
Sbjct: 580 KPNHITILGVLFACSHAGLVNEGWYYFRSMNNLYGIDPGREHYGCMLDLLGRAEKLDDMV 639

Query: 474 STIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAG 533
             I  M   P+ V W +LL   R   N D+  YAA  ++K+ P   G YV+LSNIYA + 
Sbjct: 640 KLIHEMNCEPDVVTWRTLLDACRARQNVDLATYAAKEILKLDPQDTGAYVLLSNIYAISK 699

Query: 534 QWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLK 593
           +W+ V+EVR  MKKRG RK+PG S IE    +H F++GDKSHPQ DEI+ +L++   +L 
Sbjct: 700 RWNDVAEVRRTMKKRGIRKEPGCSWIEVNKQIHAFILGDKSHPQIDEINRQLNQFICRLA 759

Query: 594 AAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCH 653
            AG+VPDT  VL  +E + ++E  L  HSE+LAI FG+++      IRI KNL++C DCH
Sbjct: 760 GAGYVPDTNFVLQDLEGE-QREDSLRYHSEKLAIVFGIMSFPKEKTIRIWKNLKICGDCH 818

Query: 654 SVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
              KL++ +  R I++RD  R+HHF++G CSC D+W
Sbjct: 819 KFAKLIAELEQRHIVIRDPIRYHHFQDGVCSCGDYW 854


>gi|225454494|ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Vitis vinifera]
          Length = 913

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 227/665 (34%), Positives = 370/665 (55%), Gaps = 16/665 (2%)

Query: 37  TQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKC 96
            +Q+H    +  L     + + L+S+Y       L  AR +FD  +++ +   +N +I  
Sbjct: 253 AKQIHGYVFRFGLDSDVSLCNPLISMYSKN--GKLELARRVFDS-MENRNTSSWNSMISS 309

Query: 97  YVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFD 156
           Y      ++A +LF +L    + PD  T  C++ G    G  +E   I   +   GF  +
Sbjct: 310 YAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPN 369

Query: 157 KFVLSSLVSMYAKFGEIDLGRR----VFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFD 212
              ++S++   ++ G +++G+     V     D D+     LID YVK   +  A  +FD
Sbjct: 370 SSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFD 429

Query: 213 EMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR----NLVSWNAMINGYMKAGDVDS 268
            M +R++F+W  LV G+S  G  E A  +  +M       +LV+WN MI+GY   G    
Sbjct: 430 NMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKE 489

Query: 269 ACELFDDME----IRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS 324
           A  +    +      ++++W ++I+G    G   ++L+    M    V+PN A++   L 
Sbjct: 490 ALAVLHQTKSLGLTPNVVSWTALISGSSQAGNNRDSLKFFAQMQQEGVMPNSASITCLLR 549

Query: 325 AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGH 384
           A A L++L KG+ +H   ++NGF+ D  + T LI MYSK  S+++A  VFR I  K +  
Sbjct: 550 ACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLAS 609

Query: 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMI 444
           W  MI+G  + G+  +A+ +FN+M ++G+ P AITF  +L+AC ++GL+ +G +YF+ MI
Sbjct: 610 WNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMI 669

Query: 445 NDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIG 504
            DY I P +EHY C+VD+L R GYL+EA   I +MP++P+  IW +LL   R H N    
Sbjct: 670 TDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLKFA 729

Query: 505 EYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGV 564
           E AA NL K+ P+    Y+++ N+Y+   +W+ +  +RE+M   G R     S I+    
Sbjct: 730 ETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWIQINQR 789

Query: 565 LHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSER 624
           +H F   +K HP   +I+ +L ++ +++K  G+VPD   V   + D+ EK+  L +H+E+
Sbjct: 790 VHVFSSDEKPHPDAGKIYFELYQLVSEMKKLGYVPDVNCVYQNM-DEVEKQKILLSHTEK 848

Query: 625 LAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCS 684
           LAI +GLI +K+  PIR++KN R+C+DCHS  K +S +  RE+ +RD  RFHHF+ G CS
Sbjct: 849 LAITYGLIKMKAGEPIRVIKNTRICSDCHSAAKYISLVKARELFLRDGVRFHHFREGKCS 908

Query: 685 CKDFW 689
           C DFW
Sbjct: 909 CNDFW 913



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 123/440 (27%), Positives = 206/440 (46%), Gaps = 76/440 (17%)

Query: 104 HEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSL 163
           H  L +F +L  + ++ D+      +K   R+  I  G +IHG + K GF  D ++  +L
Sbjct: 115 HIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCAL 174

Query: 164 VSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP-------- 215
           ++ Y +   ++   +VF  M + + + WN  I   ++  +++  ++LF +M         
Sbjct: 175 MNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAET 234

Query: 216 -------------------------------DRDLFSWTCLVDGFSKCGKVEIAREIFYR 244
                                          D D+     L+  +SK GK+E+AR +F  
Sbjct: 235 ATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDS 294

Query: 245 MPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDL----ITWNSMIAGYELNGRFMEA 300
           M NRN  SWN+MI+ Y   G ++ A  LF ++E  D+    +TWN +++G+ L+G   E 
Sbjct: 295 MENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEV 354

Query: 301 LELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQM 360
           L +L+ M      PN +++ S L A++ L  LN G+  H Y+++NGF  D  +GT LI M
Sbjct: 355 LNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDM 414

Query: 361 YSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITF 420
           Y K  S+ SA  VF  +  + +  W +++ G    GM   AL L N+M + G+KP  +T+
Sbjct: 415 YVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTW 474

Query: 421 IGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP 480
            G                    MI+ Y +      +GC  + L     L + K    S+ 
Sbjct: 475 NG--------------------MISGYAM------WGCGKEAL---AVLHQTK----SLG 501

Query: 481 MRPNFVIWMSLLSGARNHGN 500
           + PN V W +L+SG+   GN
Sbjct: 502 LTPNVVSWTALISGSSQAGN 521



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 124/505 (24%), Positives = 208/505 (41%), Gaps = 87/505 (17%)

Query: 71  LHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIK 130
           L  A  +F   + +P  +L+N  I   + +++  + + LF  +   FL  +  T+  V++
Sbjct: 184 LEKANQVFHE-MPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQ 242

Query: 131 GAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVS 190
              ++GA+   KQIHG VF+ G   D  + + L+SMY+K G+++L RRVFD+M++++  S
Sbjct: 243 ACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSS 302

Query: 191 WNCLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRM- 245
           WN +I  Y   G +  A  LF E+   D+     +W CL+ G    G  E    I  RM 
Sbjct: 303 WNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQ 362

Query: 246 -----PNRNLVS---------------------------------WNAMINGYMKAGDVD 267
                PN + ++                                   ++I+ Y+K   + 
Sbjct: 363 GEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLT 422

Query: 268 SACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVA 327
           SA  +FD+M+ R++  WNS+++GY   G F +AL LL  M                    
Sbjct: 423 SAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQM-------------------- 462

Query: 328 GLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK----KKVG 383
                           K G   D V    +I  Y+  G  + AL V            V 
Sbjct: 463 ---------------EKEGIKPDLVTWNGMISGYAMWGCGKEALAVLHQTKSLGLTPNVV 507

Query: 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMM 443
            WTA+I G    G    +L  F +M + G+ P + +   +L AC+   L+  G+    + 
Sbjct: 508 SWTALISGSSQAGNNRDSLKFFAQMQQEGVMPNSASITCLLRACASLSLLQKGKEIHCLS 567

Query: 444 INDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGAR--NHGNK 501
           I +  IE        L+D+  ++  L+ A      +  +     W  ++ G      G +
Sbjct: 568 IRNGFIEDVFVATA-LIDMYSKSSSLKNAHKVFRRIQNK-TLASWNCMIMGFAIFGLGKE 625

Query: 502 DIGEYAANNLIKVAPDTIGCYVVLS 526
            I  +     + V PD I    +LS
Sbjct: 626 AISVFNEMQKVGVGPDAITFTALLS 650



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/377 (22%), Positives = 155/377 (41%), Gaps = 46/377 (12%)

Query: 162 SLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGY-VKKGEVEVAMKLFDEMPDRDL- 219
           +L+S Y  FG+      VF     ++ + WN  ++ +    G + + +++F E+  + + 
Sbjct: 71  NLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVV 130

Query: 220 FSWTCLVDGFSKCGKV-------EIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACEL 272
           F           C +V       EI   +  R  + ++    A++N Y +   ++ A ++
Sbjct: 131 FDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQV 190

Query: 273 FDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVL 332
           F +M   + + WN  I     + +  + +EL   M    +    AT+V  L A   +  L
Sbjct: 191 FHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGAL 250

Query: 333 NKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMI--- 389
           N  + +H Y+ + G   D  L   LI MYSK G +E A  VF ++  +    W +MI   
Sbjct: 251 NAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSY 310

Query: 390 VGLG--------------------------------MHGMATQALDLFNKMCRMGMKPTA 417
             LG                                +HG   + L++  +M   G KP +
Sbjct: 311 AALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNS 370

Query: 418 ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIE 477
            +   VL A S  G +N G+     ++ + G +  +     L+D+  +   L  A++  +
Sbjct: 371 SSMTSVLQAISELGFLNMGKETHGYVLRN-GFDCDVYVGTSLIDMYVKNHSLTSAQAVFD 429

Query: 478 SMPMRPNFVIWMSLLSG 494
           +M  R N   W SL+SG
Sbjct: 430 NMKNR-NIFAWNSLVSG 445


>gi|222640201|gb|EEE68333.1| hypothetical protein OsJ_26615 [Oryza sativa Japonica Group]
          Length = 983

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 196/418 (46%), Positives = 282/418 (67%), Gaps = 2/418 (0%)

Query: 252 SWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGD 311
           ++N +I  Y +AG V  A  LFD+M  R+ ++W++M+ GY   G   EAL L   M    
Sbjct: 279 TFNTLITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADG 338

Query: 312 VLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESAL 371
           V P+D  LV  L+A A L VL +G+W+H Y+  N   +   LGT L+ MY+KCG ++ A+
Sbjct: 339 VRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAM 398

Query: 372 TVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAG 431
            VF+ + +K V  WT MI GL MHG  ++AL+LF++M R+G+KP  I FIG L AC+H G
Sbjct: 399 EVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTG 458

Query: 432 LVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSL 491
           LV+ GR  F+ M+  YGI+P IEHYGC+VD+L R G L EA+  +E MPM+P+ +IW +L
Sbjct: 459 LVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGAL 518

Query: 492 LSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFR 551
           ++G R H N ++ EY   + I++ PD  G YV+L NIYAA+G+     E+R +M+++G  
Sbjct: 519 MAGCRFHKNVELAEYVVKHWIELEPDKSGAYVLLGNIYAASGRHASAREIRHLMREKGVD 578

Query: 552 KDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLK-AAGHVPDTTQVLLCIED 610
           K PG S++E +GV+H+F+VGD SHP  +EI SK  E+ ++++   G+VPD  +VLL IE+
Sbjct: 579 KTPGCSTVEIKGVIHQFIVGDLSHPFIEEILSKWDEIDSRIRLEEGYVPDKKEVLLDIEE 638

Query: 611 QKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREII 668
           + EKE  L  HSE++AIAF LIN     PIRIVKNLRVC+DCH VTKL+S +++  ++
Sbjct: 639 E-EKENALSRHSEKMAIAFALINTSDDMPIRIVKNLRVCHDCHHVTKLISKVFDLTVV 695



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 123/250 (49%), Gaps = 25/250 (10%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           AR++FD +    + V ++ ++  YV      EAL LF  +    + PD+  L  V+   A
Sbjct: 296 ARALFDEMPAR-NAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVLAACA 354

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
           +LG +++GK +HG +         F+ ++LV MYAK GE+ L   VF  M +K++++W  
Sbjct: 355 QLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTT 414

Query: 194 LIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKC---GKVEIAREIFYR 244
           +I G    G    A++LF +M      PD   F     +     C   G V+  RE+F  
Sbjct: 415 MIKGLAMHGRGSEALELFSQMERLGVKPDDIAF-----IGALCACTHTGLVDKGRELFDS 469

Query: 245 MPNR-----NLVSWNAMINGYMKAGDVDSACELFDDMEIR-DLITWNSMIAGYELNGRFM 298
           M  +      +  +  M++   + G ++ A E+ + M ++ D + W +++AG     RF 
Sbjct: 470 MVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAGC----RFH 525

Query: 299 EALELLETML 308
           + +EL E ++
Sbjct: 526 KNVELAEYVV 535


>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 230/585 (39%), Positives = 335/585 (57%), Gaps = 41/585 (7%)

Query: 144 IHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGE 203
           IH  + + G   D F++  L+   +K   ID   R+F    + ++  +  LIDG+V  G 
Sbjct: 68  IHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGN 127

Query: 204 VEVAMKLFDEM------PDRDLF--------SWTCLVDG--------------------- 228
              A++L+  M      PD  L         S   L +G                     
Sbjct: 128 YFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLR 187

Query: 229 ----FSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITW 284
               + KCG++  AR +F  MP  ++V+   MI+ Y   G V+ A  +F  +  +D + W
Sbjct: 188 IMELYGKCGELGDARRVFEEMPE-DVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCW 246

Query: 285 NSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVK 344
            +MI G+  N     ALE    M   +V PN+ T+V  LSA + L  L  GRW+HSY+ K
Sbjct: 247 TAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRK 306

Query: 345 NGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDL 404
               ++  +G  LI MYS+CGSI+ A TVF  +  + V  +  MI GL M+G + QA++L
Sbjct: 307 FEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIEL 366

Query: 405 FNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILC 464
           F  M    ++PT +TF+GVLNACSH GLV+ G + F+ M  DYG+EP IEHYGC+VD+L 
Sbjct: 367 FRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLG 426

Query: 465 RTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVV 524
           R G LEEA   I +M M P+ ++  +LLS  + H N ++GE  A  L        G YV+
Sbjct: 427 RVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQADSGTYVL 486

Query: 525 LSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSK 584
           LS++YA++G+W + ++VR  MK+ G +K+PG SSIE    +HEF++GD  HP+ + I+ K
Sbjct: 487 LSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPRKERIYEK 546

Query: 585 LSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVK 644
           L E+   L+  G+ P+   VL  IED  EKE  L  HSERLAI +GLI+ +  + IR++K
Sbjct: 547 LEELNRLLRLEGYHPEKEVVLQDIED-GEKEWALAIHSERLAICYGLISTEPCTVIRVMK 605

Query: 645 NLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           NLRVC DCHS  KL++ I  R+++VRD +RFH+F+NG+CSC D+W
Sbjct: 606 NLRVCYDCHSAIKLIAKITRRKVVVRDRNRFHYFENGACSCGDYW 650



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 107/400 (26%), Positives = 182/400 (45%), Gaps = 82/400 (20%)

Query: 71  LHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIK 130
           + YA  IF +   +P++ LY  LI  +V +    +A+ L+  +L   +LPDN+ +  ++K
Sbjct: 97  IDYASRIF-QYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILK 155

Query: 131 GAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD----- 185
                 A++EG+++H    KLG   ++ V   ++ +Y K GE+   RRVF+ M +     
Sbjct: 156 ACGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAS 215

Query: 186 -------------------------KDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL- 219
                                    KD V W  +IDG+V+  E+  A++ F  M   ++ 
Sbjct: 216 TVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVR 275

Query: 220 ---FSWTCLVDGFSKCGKVEIAREIFYRMP----NRNLVSWNAMINGYMKAGDVDSACEL 272
              F+  C++   S+ G +EI R +   M       NL   NA+IN Y + G +D A  +
Sbjct: 276 PNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTV 335

Query: 273 FDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVL 332
           FD+M+ RD+IT+N+MI+G  +NG+  +A+EL   M+   + P + T V  L+A +     
Sbjct: 336 FDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACS----- 390

Query: 333 NKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK-----KKVGHWTA 387
                 H  +V  GF                         +F ++++      ++ H+  
Sbjct: 391 ------HGGLVDFGF------------------------KIFHSMTRDYGVEPQIEHYGC 420

Query: 388 MIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNAC 427
           M+  LG  G   +A DL      M M P  I    +L+AC
Sbjct: 421 MVDLLGRVGRLEEAYDLIRT---MKMTPDHIMLGTLLSAC 457



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 155/323 (47%), Gaps = 25/323 (7%)

Query: 56  SSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLD 115
           S+ ++S Y D  +  +  A ++F R+ +    V +  +I  +V N+  + AL  F  +  
Sbjct: 215 STVMISSYSDQGL--VEEAGAVFSRV-RRKDTVCWTAMIDGFVRNEEMNRALEAFRGMQG 271

Query: 116 RFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDL 175
             + P+ FT+ CV+   ++LGA++ G+ +H  + K     + FV ++L++MY++ G ID 
Sbjct: 272 ENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDE 331

Query: 176 GRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSK 231
            + VFD M D+D++++N +I G    G+   A++LF  M  R L     ++  +++  S 
Sbjct: 332 AQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSH 391

Query: 232 CGKVEIAREIFYRMP-----NRNLVSWNAMINGYMKAGDVDSACELFDDMEIR-DLITWN 285
            G V+   +IF+ M         +  +  M++   + G ++ A +L   M++  D I   
Sbjct: 392 GGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLG 451

Query: 286 SMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKN 345
           ++++  +++    + LEL E   +  VL +     S    +      + G+W  +  V+ 
Sbjct: 452 TLLSACKMH----KNLELGEQ--VAKVLEDRGQADSGTYVLLSHVYASSGKWKEAAQVRA 505

Query: 346 GFVVDGVLGTLLIQMYSKCGSIE 368
                G      +Q    C SIE
Sbjct: 506 KMKEAG------MQKEPGCSSIE 522


>gi|345505220|gb|AEN99834.1| chlororespiratory reduction 4 [Draba nemorosa]
          Length = 612

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 230/579 (39%), Positives = 329/579 (56%), Gaps = 45/579 (7%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNL-HYARSIFDRI-------LQHPS 86
           ++  ++HA  +    I +  +++R++  + D   + L  +AR +F           + P 
Sbjct: 28  EDVNKIHARLITNGFIKNPNLTTRIVLDFADSRRSYLAEFARFVFHEYHVCSNGDFEDP- 86

Query: 87  LVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHG 146
             L+N +IK +       +AL LFC +L+  +  D F+L  V+K  +RLG +KEG QIHG
Sbjct: 87  -FLWNAVIKSHSHGLDPRKALLLFCLMLETGVSVDKFSLSLVLKACSRLGFVKEGMQIHG 145

Query: 147 LVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVE- 205
            + K G   D ++ + L+ +Y K G +   R+VFD M  +D VS+N +IDGYVK G +E 
Sbjct: 146 FLRKTGIWSDLYLQNCLIGLYIKCGCLGYARQVFDRMPRRDSVSYNSMIDGYVKCGMIES 205

Query: 206 ---------------------------------VAMKLFDEMPDRDLFSWTCLVDGFSKC 232
                                            VA KLFDEMP++DL SW  L+DG+ K 
Sbjct: 206 ARGLFDLMPKEKKNLISWNFMISGYAQRADGVNVAKKLFDEMPEKDLISWNSLIDGYVKH 265

Query: 233 GKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYE 292
           G++E A+ +F +MP R++V+W  M++GY K G V  A  LFD M +RD++ +NSMI GY 
Sbjct: 266 GRMEDAKSLFNKMPKRDVVTWATMVDGYAKLGFVHQAKSLFDRMPLRDVVAYNSMITGYV 325

Query: 293 LNGRFMEALELLETMLIGDVL-PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDG 351
            N    EA+ +   M     L P++ TLV  LSA+A L  L+K   +H YI+ N F + G
Sbjct: 326 QNRYHKEAIGIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLYIMDNKFRLGG 385

Query: 352 VLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRM 411
            LG  LI  YSKCGSI+ ++ VF  I  K + HW AMI GL +HG+   A D+  ++ + 
Sbjct: 386 KLGVALIDTYSKCGSIQKSMRVFEEIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIEKR 445

Query: 412 GMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEE 471
            +KP  ITFIGVLNACSH+GLV +G   F +M   + IEP ++HYGC+VDIL R+G +E 
Sbjct: 446 SIKPDDITFIGVLNACSHSGLVKEGLLCFELMRRKHKIEPKLQHYGCMVDILSRSGSIEL 505

Query: 472 AKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAA 531
           AK+ IE MP+ PN VIW + L+   NH   + GE  A +L          +V+LSN+YA+
Sbjct: 506 AKNLIEEMPIEPNDVIWRTFLTACSNHKEFETGELVAKHLFLQGGYNPSSFVLLSNMYAS 565

Query: 532 AGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVV 570
            G W +V  VR  MK+R  RK PG S IE  G +HEF V
Sbjct: 566 FGMWKEVRRVRTTMKERKLRKIPGCSWIELDGNVHEFFV 604


>gi|224143723|ref|XP_002325053.1| predicted protein [Populus trichocarpa]
 gi|222866487|gb|EEF03618.1| predicted protein [Populus trichocarpa]
          Length = 607

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 230/573 (40%), Positives = 331/573 (57%), Gaps = 29/573 (5%)

Query: 142 KQIHGLVFK--LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYV 199
           KQIH L  +  L        L S +  ++   +++   RVFD +D+ +   WN LI    
Sbjct: 39  KQIHALSLRSTLPNHSTTLFLYSRILHFSSLHDLNYAYRVFDQVDNPNSFMWNILIRACA 98

Query: 200 KKGEVEV---AMKLFDEM-------PDRDLFSWTCLVDGF------SKCGKVEIAREIFY 243
           +   V +   A+ L++ M       PD   F +      +       K     + +  F 
Sbjct: 99  QSQSVHLKREAILLYNTMLQRSSPFPDNHTFPFVLKACAYLFALFEGKQAHAHLLKLGF- 157

Query: 244 RMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALEL 303
                ++   N++I+ Y   G ++SA  +FD M  R L++WN+MI  + L G F  AL+L
Sbjct: 158 ---QSDVYINNSLIHFYASCGSLESAKNVFDKMPQRSLVSWNAMIDAFVLFGEFETALQL 214

Query: 304 LETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVV---DGVL-GTLLIQ 359
                     P+  T+ S ++A AGL  L+ G W H+++++N  V    D VL    L+ 
Sbjct: 215 FVQFQQQFFEPDGYTIQSVINACAGLCALSLGMWAHAFLLRNCGVSVARDHVLVNNSLLD 274

Query: 360 MYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG-MKPTAI 418
           MY KCGS++ A  +F  + K  V  W +MI+G  MHG    AL+ F +M R+    P +I
Sbjct: 275 MYCKCGSLDIATQIFEGMQKHDVTSWNSMILGFAMHGKGELALECFERMIRISRFVPNSI 334

Query: 419 TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIES 478
           TF+GVL+AC+H  +VN+GR+YF+MM+N+Y IEP +EHYGCLVDIL R G ++EA   + S
Sbjct: 335 TFVGVLSACNHRYMVNEGRKYFDMMVNEYKIEPQLEHYGCLVDILARAGLIDEALELVAS 394

Query: 479 MPMRPNFVIWMSLL-SGARNHGNKDIGEYAANNLIKVA-PDTIGCYVVLSNIYAAAGQWD 536
           MPM+P+ VIW SLL S  + + + ++ E  A  +++    D+ G YV+LS +YA+A +W+
Sbjct: 395 MPMKPDVVIWRSLLDSCCKKNASVELSENIARQILESEEADSSGVYVLLSRVYASASRWN 454

Query: 537 KVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAG 596
            V  VR++M   G  K+PG S IE  GV HEF  GD SHPQT EI+  L+ +  ++ + G
Sbjct: 455 DVGLVRKLMTNNGILKEPGCSLIEVDGVTHEFFAGDTSHPQTKEIYQVLNVVEERIDSTG 514

Query: 597 HVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVT 656
           + PD +Q  +  E    K   L  HSERLAIA GL+N+K   PIRI KNLRVC+DCH VT
Sbjct: 515 YKPDYSQAPMVDELNTSKRDSLRLHSERLAIALGLLNLKPGMPIRIFKNLRVCDDCHKVT 574

Query: 657 KLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            L+S I+N EIIVRD  RFHHFK+GSCSC D+W
Sbjct: 575 GLISEIFNVEIIVRDRVRFHHFKDGSCSCMDYW 607



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 117/386 (30%), Positives = 204/386 (52%), Gaps = 46/386 (11%)

Query: 36  ETQQLHALSVKTNLIYHSG---ISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNL 92
           + +Q+HALS+++ L  HS    + SR+L       +++L+YA  +FD++  +P+  ++N+
Sbjct: 37  QLKQIHALSLRSTLPNHSTTLFLYSRILHF---SSLHDLNYAYRVFDQV-DNPNSFMWNI 92

Query: 93  LIKCYVFNQRSH---EALTLFCDLLDRF-LLPDNFTLPCVIKGAARLGAIKEGKQIHGLV 148
           LI+    +Q  H   EA+ L+  +L R    PDN T P V+K  A L A+ EGKQ H  +
Sbjct: 93  LIRACAQSQSVHLKREAILLYNTMLQRSSPFPDNHTFPFVLKACAYLFALFEGKQAHAHL 152

Query: 149 FKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVA- 207
            KLGF  D ++ +SL+  YA  G ++  + VFD M  + LVSWN +ID +V  GE E A 
Sbjct: 153 LKLGFQSDVYINNSLIHFYASCGSLESAKNVFDKMPQRSLVSWNAMIDAFVLFGEFETAL 212

Query: 208 ---MKLFDEMPDRDLFSWTCLVDG-----------------FSKCGKVEIAREIFYRMPN 247
              ++   +  + D ++   +++                     CG V +AR+       
Sbjct: 213 QLFVQFQQQFFEPDGYTIQSVINACAGLCALSLGMWAHAFLLRNCG-VSVARD------- 264

Query: 248 RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETM 307
            +++  N++++ Y K G +D A ++F+ M+  D+ +WNSMI G+ ++G+   ALE  E M
Sbjct: 265 -HVLVNNSLLDMYCKCGSLDIATQIFEGMQKHDVTSWNSMILGFAMHGKGELALECFERM 323

Query: 308 L-IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLG--TLLIQMYSKC 364
           + I   +PN  T V  LSA     ++N+GR     +V N + ++  L     L+ + ++ 
Sbjct: 324 IRISRFVPNSITFVGVLSACNHRYMVNEGRKYFDMMV-NEYKIEPQLEHYGCLVDILARA 382

Query: 365 GSIESALTVFRAIS-KKKVGHWTAMI 389
           G I+ AL +  ++  K  V  W +++
Sbjct: 383 GLIDEALELVASMPMKPDVVIWRSLL 408


>gi|115475551|ref|NP_001061372.1| Os08g0249600 [Oryza sativa Japonica Group]
 gi|113623341|dbj|BAF23286.1| Os08g0249600 [Oryza sativa Japonica Group]
          Length = 951

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 196/418 (46%), Positives = 282/418 (67%), Gaps = 2/418 (0%)

Query: 252 SWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGD 311
           ++N +I  Y +AG V  A  LFD+M  R+ ++W++M+ GY   G   EAL L   M    
Sbjct: 279 TFNTLITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADG 338

Query: 312 VLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESAL 371
           V P+D  LV  L+A A L VL +G+W+H Y+  N   +   LGT L+ MY+KCG ++ A+
Sbjct: 339 VRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAM 398

Query: 372 TVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAG 431
            VF+ + +K V  WT MI GL MHG  ++AL+LF++M R+G+KP  I FIG L AC+H G
Sbjct: 399 EVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTG 458

Query: 432 LVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSL 491
           LV+ GR  F+ M+  YGI+P IEHYGC+VD+L R G L EA+  +E MPM+P+ +IW +L
Sbjct: 459 LVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGAL 518

Query: 492 LSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFR 551
           ++G R H N ++ EY   + I++ PD  G YV+L NIYAA+G+     E+R +M+++G  
Sbjct: 519 MAGCRFHKNVELAEYVVKHWIELEPDKSGAYVLLGNIYAASGRHASAREIRHLMREKGVD 578

Query: 552 KDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLK-AAGHVPDTTQVLLCIED 610
           K PG S++E +GV+H+F+VGD SHP  +EI SK  E+ ++++   G+VPD  +VLL IE+
Sbjct: 579 KTPGCSTVEIKGVIHQFIVGDLSHPFIEEILSKWDEIDSRIRLEEGYVPDKKEVLLDIEE 638

Query: 611 QKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREII 668
           + EKE  L  HSE++AIAF LIN     PIRIVKNLRVC+DCH VTKL+S +++  ++
Sbjct: 639 E-EKENALSRHSEKMAIAFALINTSDDMPIRIVKNLRVCHDCHHVTKLISKVFDLTVV 695



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 123/250 (49%), Gaps = 25/250 (10%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           AR++FD +    + V ++ ++  YV      EAL LF  +    + PD+  L  V+   A
Sbjct: 296 ARALFDEMPAR-NAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVLAACA 354

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
           +LG +++GK +HG +         F+ ++LV MYAK GE+ L   VF  M +K++++W  
Sbjct: 355 QLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTT 414

Query: 194 LIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKC---GKVEIAREIFYR 244
           +I G    G    A++LF +M      PD   F     +     C   G V+  RE+F  
Sbjct: 415 MIKGLAMHGRGSEALELFSQMERLGVKPDDIAF-----IGALCACTHTGLVDKGRELFDS 469

Query: 245 MPNR-----NLVSWNAMINGYMKAGDVDSACELFDDMEIR-DLITWNSMIAGYELNGRFM 298
           M  +      +  +  M++   + G ++ A E+ + M ++ D + W +++AG     RF 
Sbjct: 470 MVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAGC----RFH 525

Query: 299 EALELLETML 308
           + +EL E ++
Sbjct: 526 KNVELAEYVV 535


>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/571 (37%), Positives = 336/571 (58%), Gaps = 11/571 (1%)

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD 187
           ++K  A+   + +GK  H  +  +G   D    + L++MY+K G +D  R+VFD M  + 
Sbjct: 70  ILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRS 129

Query: 188 LVSWNCLIDGYVKKGEVEVAMKLFDEM-----PDRDLFSWTCLVDGFSKCGKVEI----A 238
           LVSWN +I    + GE   A+ L  +M     P  +    + L    +KC   E     A
Sbjct: 130 LVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHA 189

Query: 239 REIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFM 298
             I   M + N+    A+++ Y K G +  A  +F+ M  R ++TW+SM AGY  N  + 
Sbjct: 190 FAIKAAM-DLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYE 248

Query: 299 EALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLI 358
           +AL L        +  +   + S + A AGLA + +G+ M++ + K+GF  +  + + LI
Sbjct: 249 QALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQMNALLSKSGFCSNIFVASSLI 308

Query: 359 QMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI 418
            MY+KCG IE +  VFR + K+ V  W AMI GL  H  + + + LF KM +MG+ P  +
Sbjct: 309 DMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDV 368

Query: 419 TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIES 478
           TF+ VL+AC H GLV  G++YF++M  ++ + P + HY C+VD L R G + EA   I  
Sbjct: 369 TFVSVLSACGHMGLVRKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISK 428

Query: 479 MPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKV 538
           +P   +  +W SLL+  R HGN ++ E AA  L  + P   G Y++LSN+YAA G+WD+V
Sbjct: 429 LPFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAANGKWDEV 488

Query: 539 SEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHV 598
           +++R+++K+   +K+ G S IE +  +H F+VG+++HP+  EI+SKL+E+ ++L+  G+ 
Sbjct: 489 AKMRKLLKESDVKKERGKSWIEIKDKVHLFMVGERNHPKIVEIYSKLNEVMDELQKLGYK 548

Query: 599 PDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKL 658
            +T   L  + +  ++E  L +HSE+LA   GL+ +   +PIRI+KNLR+C DCHS  KL
Sbjct: 549 VETQHDLHQVGESIKQEL-LRHHSEKLAFTMGLLFLPPNAPIRIMKNLRICGDCHSFMKL 607

Query: 659 LSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            S  + R++IVRD +RFHHFKNG CSC DFW
Sbjct: 608 ASKFFCRDVIVRDTNRFHHFKNGCCSCGDFW 638



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 91/399 (22%), Positives = 164/399 (41%), Gaps = 79/399 (19%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYV 98
           Q+  + +KT+L+     S+ L+++Y      ++ +AR +FD  +   SLV +N +I    
Sbjct: 89  QILLMGLKTDLL----TSNILINMY--SKCGSVDFARQVFDE-MPSRSLVSWNTMIGSLT 141

Query: 99  FNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKF 158
            N   +EAL L   +         FT+  V+   A   A+ E + +H    K     + F
Sbjct: 142 QNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLNVF 201

Query: 159 VLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD-- 216
           V ++L+ +YAK G +     VF++M D+ +V+W+ +  GYV+    E A+ LF +  +  
Sbjct: 202 VATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETG 261

Query: 217 -------------------------------------RDLFSWTCLVDGFSKCGKVEIAR 239
                                                 ++F  + L+D ++KCG +E + 
Sbjct: 262 LKHDQFLMSSVICACAGLAAMIEGKQMNALLSKSGFCSNIFVASSLIDMYAKCGGIEESY 321

Query: 240 EIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFME 299
           ++F  +  RN+V WNAMI+G  +                               + R +E
Sbjct: 322 KVFRDVEKRNVVLWNAMISGLSR-------------------------------HARSLE 350

Query: 300 ALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLG-TLLI 358
            + L E M    + PND T VS LSA   + ++ KG+     + K   +   V   + ++
Sbjct: 351 VMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVRKGQKYFDLMTKEHHLAPNVFHYSCMV 410

Query: 359 QMYSKCGSIESALTVFRAIS-KKKVGHWTAMIVGLGMHG 396
              S+ G I  A  +   +        W +++     HG
Sbjct: 411 DTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRTHG 449



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 150/306 (49%), Gaps = 18/306 (5%)

Query: 36  ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIK 95
           E Q LHA ++K  +  +  +++ LL +Y    +  +  A  +F+  +   S+V ++ +  
Sbjct: 183 ECQLLHAFAIKAAMDLNVFVATALLDVYAKCGL--MKDAVCVFES-MPDRSVVTWSSMAA 239

Query: 96  CYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF 155
            YV N+   +AL LF    +  L  D F +  VI   A L A+ EGKQ++ L+ K GF  
Sbjct: 240 GYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQMNALLSKSGFCS 299

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP 215
           + FV SSL+ MYAK G I+   +VF  ++ +++V WN +I G  +       M LF++M 
Sbjct: 300 NIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQ 359

Query: 216 DRDLF-SWTCLVDGFSKCGKVEIAR--EIFYRMPNR------NLVSWNAMINGYMKAGDV 266
              L  +    V   S CG + + R  + ++ +  +      N+  ++ M++   +AG +
Sbjct: 360 QMGLSPNDVTFVSVLSACGHMGLVRKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQI 419

Query: 267 DSACELFDDMEIRDLIT-WNSMIAGYELNGRFMEALELLETMLIGDVLPNDA---TLVSA 322
             A +L   +      + W S++A    +G  +E  E+    L  D+ P+++    L+S 
Sbjct: 420 FEAYDLISKLPFNASASMWGSLLASCRTHGN-LELAEVAAKKLF-DIEPHNSGNYLLLSN 477

Query: 323 LSAVAG 328
           + A  G
Sbjct: 478 MYAANG 483


>gi|357124715|ref|XP_003564043.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Brachypodium distachyon]
          Length = 599

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 206/503 (40%), Positives = 301/503 (59%), Gaps = 35/503 (6%)

Query: 190 SWNCLIDGYVKKGEVEVAMKLFDEMP---DRDLFSWTCLVDGFSKCGKVEIAREIFYRMP 246
           S+N L+  Y+  G  ++A +LF       D D+ SWT +V G  + G V+ AR++F  MP
Sbjct: 129 SFNALLAAYLANGRADLASRLFGSCSSPGDLDVVSWTTMVGGLCRLGLVDDARKLFDGMP 188

Query: 247 NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLET 306
            RNL+SWNAMI+GY+KAG                               RF++ALE+ + 
Sbjct: 189 ERNLISWNAMISGYVKAG-------------------------------RFLDALEVFDQ 217

Query: 307 MLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGS 366
           M    +  N     SA+ A  G  VL +GR +H ++ ++G  +D  L T ++ MY KCGS
Sbjct: 218 MRALGIEGNGFVAASAVVACTGAGVLARGREVHRWVEQSGITMDEKLATAVVDMYCKCGS 277

Query: 367 IESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNA 426
           +E A  VF+ +  K +  W  MI GL +HG    A++LF++M R  + P  +T + VL A
Sbjct: 278 VEEAWHVFKVLPTKGLTSWNCMIGGLAVHGRCKDAIELFHEMEREDVAPDDVTLVNVLTA 337

Query: 427 CSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFV 486
           C+H G+V+DG  YFN ++  YGIEP +EHYGC+VD+  R G L+EAK  I+ MPM P+  
Sbjct: 338 CAHTGMVSDGHNYFNYIVQRYGIEPKMEHYGCMVDLFGRAGLLDEAKKVIDDMPMEPDIG 397

Query: 487 IWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMK 546
           +  +L    + H + D+GE     +I++ P   G YV+L+N+ A+AGQW  V++VR +M 
Sbjct: 398 VLGALFGACKIHRDLDLGEAIGWRVIELDPQNSGRYVLLANLLASAGQWVDVAKVRRLMD 457

Query: 547 KRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLL 606
           +R   K+ G S IE  G + EF  G   H Q  EI + + +M  K++  G++PDT+ VL 
Sbjct: 458 ERNVSKEAGRSVIEIDGEVCEFQCGSLCHAQEKEIFAAVKDMMRKIRLEGYMPDTSDVLH 517

Query: 607 CIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNRE 666
            I ++ EKE  L+ HSE+LAIAFGL+  +    +RI KNLRVC DCH  TK +S ++ RE
Sbjct: 518 DITEE-EKEVPLQYHSEKLAIAFGLLRTRPGDTVRITKNLRVCRDCHEATKFISRVFERE 576

Query: 667 IIVRDNSRFHHFKNGSCSCKDFW 689
           I+VRD +RFHHFK+G+CSC+D+W
Sbjct: 577 IVVRDRNRFHHFKDGTCSCRDYW 599



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 103/359 (28%), Positives = 158/359 (44%), Gaps = 60/359 (16%)

Query: 32  STHKETQQLHALSVKTNLIYHSGISSRLLS-LYVDPHINNLHYARSIFDRILQH---PSL 87
           +T  E +Q H+  V+  L        RLL+ L  DP    + YA     R+L H   P  
Sbjct: 12  TTISELKQHHSQLVRLGLASRPEHVRRLLAFLARDP--AGVPYAA----RLLAHHPDPHP 65

Query: 88  VLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGL 147
            L+N L      +   H A      +L   L PD+FT    +        +    Q+H L
Sbjct: 66  ALFNPLFA----SLPPHHAAAFLALMLSLPLHPDHFT----LPRLLPAAPLPLAAQLHAL 117

Query: 148 VFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD---DKDLVSWNCLIDGYVKKGEV 204
           + KL F       ++L++ Y   G  DL  R+F +     D D+VSW  ++ G  + G V
Sbjct: 118 LLKLNFHSHAHSFNALLAAYLANGRADLASRLFGSCSSPGDLDVVSWTTMVGGLCRLGLV 177

Query: 205 EVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM------------------- 245
           + A KLFD MP+R+L SW  ++ G+ K G+   A E+F +M                   
Sbjct: 178 DDARKLFDGMPERNLISWNAMISGYVKAGRFLDALEVFDQMRALGIEGNGFVAASAVVAC 237

Query: 246 -------PNRNLVSW-------------NAMINGYMKAGDVDSACELFDDMEIRDLITWN 285
                    R +  W              A+++ Y K G V+ A  +F  +  + L +WN
Sbjct: 238 TGAGVLARGREVHRWVEQSGITMDEKLATAVVDMYCKCGSVEEAWHVFKVLPTKGLTSWN 297

Query: 286 SMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVK 344
            MI G  ++GR  +A+EL   M   DV P+D TLV+ L+A A   +++ G    +YIV+
Sbjct: 298 CMIGGLAVHGRCKDAIELFHEMEREDVAPDDVTLVNVLTACAHTGMVSDGHNYFNYIVQ 356



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 101/214 (47%), Gaps = 10/214 (4%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           AR +FD + +  +L+ +N +I  YV   R  +AL +F  +    +  + F     +    
Sbjct: 180 ARKLFDGMPER-NLISWNAMISGYVKAGRFLDALEVFDQMRALGIEGNGFVAASAVVACT 238

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
             G +  G+++H  V + G   D+ + +++V MY K G ++    VF  +  K L SWNC
Sbjct: 239 GAGVLARGREVHRWVEQSGITMDEKLATAVVDMYCKCGSVEEAWHVFKVLPTKGLTSWNC 298

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDRDLFS-WTCLVDGFSKC---GKVEIAREIFYRMPNR- 248
           +I G    G  + A++LF EM   D+      LV+  + C   G V      F  +  R 
Sbjct: 299 MIGGLAVHGRCKDAIELFHEMEREDVAPDDVTLVNVLTACAHTGMVSDGHNYFNYIVQRY 358

Query: 249 ----NLVSWNAMINGYMKAGDVDSACELFDDMEI 278
                +  +  M++ + +AG +D A ++ DDM +
Sbjct: 359 GIEPKMEHYGCMVDLFGRAGLLDEAKKVIDDMPM 392


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/603 (35%), Positives = 339/603 (56%), Gaps = 49/603 (8%)

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLS--SLVSMYAKFGEIDLGRRVFDAMDD 185
           ++ G AR G I E + +   +       D  V+S  ++++ Y + G +D  + +FD M  
Sbjct: 327 LLTGLARCGRITEARILFEQIP------DPIVVSWNAMITGYMQNGMVDEAKELFDRMPF 380

Query: 186 KDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLF------------------------- 220
           ++ +SW  +I GY + G  E A+ L   +    +                          
Sbjct: 381 RNTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETGRQV 440

Query: 221 ------------SWTC--LVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDV 266
                       S+ C  L+  + KC  +E  R++F RM  ++ VSWN+ I   ++   +
Sbjct: 441 HSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAALVQNNML 500

Query: 267 DSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326
           + A  +FD+M  RD+++W ++I+ Y    R  EA+E  +TML     PN   L   LS  
Sbjct: 501 EDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSPILTILLSVC 560

Query: 327 AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWT 386
            GL     G+ +H+  +K+G   + ++   L+ MY KCG  +S   VF ++ ++ +  W 
Sbjct: 561 GGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFKCGCADSH-KVFDSMEERDIFTWN 619

Query: 387 AMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIND 446
             I G   HG+  +A+ ++  M  +G+ P  +TF+G+LNACSHAGLV++G ++F  M  D
Sbjct: 620 TFITGCAQHGLGREAIKMYEHMESVGVLPNEVTFVGLLNACSHAGLVDEGWQFFKSMSRD 679

Query: 447 YGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEY 506
           YG+ P +EHY C+VD+L RTG ++ A+  I  MP+ P+ VIW +LL   + H N +IG  
Sbjct: 680 YGLTPLLEHYACMVDLLGRTGDVQGAEKFIYDMPIEPDTVIWSALLGACKIHKNAEIGRR 739

Query: 507 AANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLH 566
           AA  L    P   G YV+LSNIY++ G W +V+E+R++MK+RG  K+PG S ++ R  +H
Sbjct: 740 AAEKLFTTEPSNAGNYVMLSNIYSSLGMWVEVAELRKIMKQRGVSKEPGCSWMQIRNKVH 799

Query: 567 EFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLA 626
            FV GDK H + +EI   L ++   L+  G+VPDT  VL  I D+++KE+ L  HSE+LA
Sbjct: 800 SFVTGDKQHEKIEEIDYTLQDLYTLLRGTGYVPDTEFVLHDI-DEEQKESSLLYHSEKLA 858

Query: 627 IAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCK 686
           +A+GL+      PI+I+KNLR+C DCH+  K +S +  R+I +RD +RFHHF+NGSCSC 
Sbjct: 859 VAYGLLVTPKGMPIQIMKNLRICGDCHTFIKFVSHVTKRDIDIRDGNRFHHFRNGSCSCG 918

Query: 687 DFW 689
           DFW
Sbjct: 919 DFW 921



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 110/382 (28%), Positives = 199/382 (52%), Gaps = 6/382 (1%)

Query: 67  HINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLP 126
           H   +  A ++F ++ Q  +LV + ++I  YV  ++  +   +F  +      PD     
Sbjct: 169 HSRQMVDAWNLFKQMPQR-NLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGASPDQSNFA 227

Query: 127 CVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAK-FGEIDLGRRVFDAMDD 185
            V+     L  +   + +  LV K GF  D  + +S++++Y +    +D+  + FD M +
Sbjct: 228 SVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMVE 287

Query: 186 KDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM 245
           ++  +W+ +I      G ++ A+ ++   P + + S T L+ G ++CG++  AR +F ++
Sbjct: 288 RNEYTWSTMIAALSHGGRIDAAIAVYGRDPVKSIPSQTALLTGLARCGRITEARILFEQI 347

Query: 246 PNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLE 305
           P+  +VSWNAMI GYM+ G VD A ELFD M  R+ I+W  MIAGY  NGR  EAL+LL+
Sbjct: 348 PDPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQ 407

Query: 306 TMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCG 365
            +    +LP+ ++L S+  A + +  L  GR +HS  VK G   +  +   LI MY KC 
Sbjct: 408 ALHRNGMLPSLSSLTSSFLACSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCR 467

Query: 366 SIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN 425
           ++E    VF  +  K    W + I  L  + M   A  +F+ M    +    +++  +++
Sbjct: 468 NMEYVRQVFNRMRVKDTVSWNSFIAALVQNNMLEDARHIFDNM----LSRDVVSWTTIIS 523

Query: 426 ACSHAGLVNDGRRYFNMMINDY 447
           A + A   ++   +F  M++++
Sbjct: 524 AYAQAERGDEAVEFFKTMLHEH 545



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 101/381 (26%), Positives = 182/381 (47%), Gaps = 42/381 (11%)

Query: 154 GFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDE 213
             DK   S+ +   A+ G +   R VFDAM  +D+++WN +I  Y   G +E A  LFD 
Sbjct: 30  ALDKSAHSARIRELARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDA 89

Query: 214 MPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELF 273
           +   ++ + T L+ G+++ G+V  AR +F  MP RN V+WNAM++ Y++ GD+  A  LF
Sbjct: 90  ISGGNVRTATILLSGYARLGRVLDARRVFDGMPERNTVAWNAMVSCYVQNGDITMARRLF 149

Query: 274 DDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL-------------------- 313
           D M  RD+ +WNSM+ GY  + + ++A  L + M   +++                    
Sbjct: 150 DAMPSRDVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWD 209

Query: 314 -----------PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYS 362
                      P+ +   S LSAV GL  L     +   ++K GF  D V+GT ++ +Y+
Sbjct: 210 IFRMMHHEGASPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYT 269

Query: 363 K-CGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFI 421
           +   +++ A+  F  + ++    W+ MI  L   G    A+ ++ +     + P+    +
Sbjct: 270 RDASALDIAIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYGRDPVKSI-PSQTALL 328

Query: 422 GVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPM 481
             L  C   G + + R  F  +      +P +  +  ++    + G ++EAK   + MP 
Sbjct: 329 TGLARC---GRITEARILFEQI-----PDPIVVSWNAMITGYMQNGMVDEAKELFDRMPF 380

Query: 482 RPNFVIWMSLLSGARNHGNKD 502
           R N + W  +++G   +G  +
Sbjct: 381 R-NTISWAGMIAGYAQNGRSE 400



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 135/297 (45%), Gaps = 43/297 (14%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRI---------------- 81
           +Q+H+L+VK    ++S + + L+S+Y      N+ Y R +F+R+                
Sbjct: 438 RQVHSLAVKAGCQFNSYVCNALISMY--GKCRNMEYVRQVFNRMRVKDTVSWNSFIAALV 495

Query: 82  --------------LQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPC 127
                         +    +V +  +I  Y   +R  EA+  F  +L     P++  L  
Sbjct: 496 QNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSPILTI 555

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD 187
           ++     LG+ K G+QIH +  K G   +  V ++L+SMY K G  D   +VFD+M+++D
Sbjct: 556 LLSVCGGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFKCGCAD-SHKVFDSMEERD 614

Query: 188 LVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLF----SWTCLVDGFSKCGKVEIAREIFY 243
           + +WN  I G  + G    A+K+++ M    +     ++  L++  S  G V+   + F 
Sbjct: 615 IFTWNTFITGCAQHGLGREAIKMYEHMESVGVLPNEVTFVGLLNACSHAGLVDEGWQFFK 674

Query: 244 RMPNRN-----LVSWNAMINGYMKAGDVDSACELFDDMEIR-DLITWNSMIAGYELN 294
            M         L  +  M++   + GDV  A +   DM I  D + W++++   +++
Sbjct: 675 SMSRDYGLTPLLEHYACMVDLLGRTGDVQGAEKFIYDMPIEPDTVIWSALLGACKIH 731


>gi|449436862|ref|XP_004136211.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Cucumis sativus]
 gi|449508034|ref|XP_004163198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Cucumis sativus]
          Length = 606

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/577 (37%), Positives = 353/577 (61%), Gaps = 21/577 (3%)

Query: 127 CVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYA--KFGEIDLGRRVFDAMD 184
           C++K   +  +++E KQ+H  + K G   D F  SS+++  A   +  +D    +F  +D
Sbjct: 37  CLVK---KCKSLEEFKQVHVQILKFGLFLDSFCSSSVLATCALSDWNSMDYACSIFQQLD 93

Query: 185 DKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIARE 240
           +     +N +I GYV     E A+ L+++M  R++    F++  ++     C ++ + +E
Sbjct: 94  EPTTFDFNTMIRGYVNNMNFENAIYLYNDMLQREVEPDNFTYPVVLKA---CARLAVIQE 150

Query: 241 -------IFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYEL 293
                  +F      ++   N++IN Y K  D++ +C +F  ME + + +W+++IA +  
Sbjct: 151 GMQIHGHVFKLGLEDDVYVQNSLINMYGKCRDIEMSCAIFRRMEQKSVASWSAIIAAHAS 210

Query: 294 NGRFMEALELLETM-LIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV 352
              + E L L E M   G     ++ LV+ LSA   L   + GR  H  ++KN   ++  
Sbjct: 211 LAMWWECLALFEDMSREGCWRAEESILVNVLSACTHLGAFHLGRCAHGSLLKNITELNVA 270

Query: 353 LGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG 412
           + T L+ MY KCGS++  L +F+ +++K    ++ +I GLG+HG   QAL +F++M   G
Sbjct: 271 VMTSLMDMYVKCGSLQKGLCLFQNMTRKNQLSYSVIISGLGLHGYGRQALQIFSEMVEEG 330

Query: 413 MKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEA 472
           ++P  +T++ VL+ACSH+GLV++G   F+ M  +Y IEPT++HYGC+VD+  R G LEEA
Sbjct: 331 LEPDDVTYVSVLSACSHSGLVDEGLDLFDKMKFEYRIEPTMQHYGCMVDLKGRAGLLEEA 390

Query: 473 KSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAA 532
              ++SMP++ N V+W SLLS  + H N  +GE AA NL +++      Y+VLSN+YA A
Sbjct: 391 FQLVQSMPIKANDVLWRSLLSACKVHDNLKLGEIAAENLFRLSSHNPSDYLVLSNMYARA 450

Query: 533 GQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKL 592
            QW+  +++R  M  RG  + PG S +E +  +++FV  DKS+ ++  I+  + +M  +L
Sbjct: 451 QQWENAAKIRTKMINRGLIQTPGYSLVEVKSKVYKFVSQDKSYCKSGNIYKMIHQMEWQL 510

Query: 593 KAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDC 652
           +  G++PDT+QV+L + D++EK   L+ HS++LAIAF LI+    S IRI++NLR+CNDC
Sbjct: 511 RFEGYMPDTSQVMLDV-DEEEKGERLKGHSQKLAIAFALIHTSQGSAIRIIRNLRMCNDC 569

Query: 653 HSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           HS TKL+S IY REI VRD +RFHHFK+G+CSC+D+W
Sbjct: 570 HSYTKLVSMIYEREITVRDRNRFHHFKDGNCSCRDYW 606



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 97/318 (30%), Positives = 169/318 (53%), Gaps = 10/318 (3%)

Query: 27  ILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPS 86
           ++K   + +E +Q+H   +K  L   S  SS +L+       N++ YA SIF + L  P+
Sbjct: 38  LVKKCKSLEEFKQVHVQILKFGLFLDSFCSSSVLATCALSDWNSMDYACSIFQQ-LDEPT 96

Query: 87  LVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHG 146
              +N +I+ YV N     A+ L+ D+L R + PDNFT P V+K  ARL  I+EG QIHG
Sbjct: 97  TFDFNTMIRGYVNNMNFENAIYLYNDMLQREVEPDNFTYPVVLKACARLAVIQEGMQIHG 156

Query: 147 LVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEV 206
            VFKLG   D +V +SL++MY K  +I++   +F  M+ K + SW+ +I  +        
Sbjct: 157 HVFKLGLEDDVYVQNSLINMYGKCRDIEMSCAIFRRMEQKSVASWSAIIAAHASLAMWWE 216

Query: 207 AMKLFDEMPDRDLF--SWTCLVDGFSKC---GKVEIAR----EIFYRMPNRNLVSWNAMI 257
            + LF++M     +    + LV+  S C   G   + R     +   +   N+    +++
Sbjct: 217 CLALFEDMSREGCWRAEESILVNVLSACTHLGAFHLGRCAHGSLLKNITELNVAVMTSLM 276

Query: 258 NGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDA 317
           + Y+K G +     LF +M  ++ ++++ +I+G  L+G   +AL++   M+   + P+D 
Sbjct: 277 DMYVKCGSLQKGLCLFQNMTRKNQLSYSVIISGLGLHGYGRQALQIFSEMVEEGLEPDDV 336

Query: 318 TLVSALSAVAGLAVLNKG 335
           T VS LSA +   ++++G
Sbjct: 337 TYVSVLSACSHSGLVDEG 354


>gi|357125908|ref|XP_003564631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Brachypodium distachyon]
          Length = 647

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 218/594 (36%), Positives = 341/594 (57%), Gaps = 44/594 (7%)

Query: 137 AIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLID 196
           AI   +Q+H      G   D+F  ++L+  YA  G++   R +F+ +  ++++SWN LI 
Sbjct: 57  AIPLLRQLHAFAATSGAAADRFTTNNLLLAYADLGDLPTARHLFEGISKRNVMSWNILIG 116

Query: 197 GYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM------PNR-- 248
           G +K G++  A +LFD+MP R++ +W  +V G +  G  E + + F  M      P+   
Sbjct: 117 GCIKNGDLGSARELFDKMPTRNVATWNAMVAGLTNVGLDEDSLQFFLAMRREGMHPDEFG 176

Query: 249 -------------------------------NLVSWNAMINGYMKAGDVDSACELFDDME 277
                                          ++   N++ + YM+ G +     +   + 
Sbjct: 177 LGSVFRCCAGLLDVVSGRQVHAYVVRSGMDSDMCVGNSLAHMYMRCGCLAEGEAVLRALP 236

Query: 278 IRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRW 337
              ++++N+ IAG   NG    ALE    M   +V P+  T VSA+S  + LA L +G+ 
Sbjct: 237 SLTIVSFNTTIAGRTQNGDSEGALEYFSMMRGVEVAPDVVTFVSAISCCSDLAALAQGQQ 296

Query: 338 MHSYIVKNGFVVDGVLG--TLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMH 395
           +H+ ++K G  VD V+   T L+ MYS+CG +  +  V+       +   +AMI   G H
Sbjct: 297 VHAQVIKAG--VDKVVPVITSLVHMYSRCGCLGDSERVYDGYCGLDLFLLSAMISACGFH 354

Query: 396 GMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEH 455
           G   +A++LF +M   G +P  +TF+ +L ACSH+GL ++G  +F +M   YG +P+++H
Sbjct: 355 GQGHKAVELFKQMMNGGAEPNEVTFLALLYACSHSGLKDEGLEFFELMTKTYGFQPSVKH 414

Query: 456 YGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVA 515
           Y C+VD+L R+G L+EA++ I SMP+R + VIW +LLS  +   N D+ E  A  +I+  
Sbjct: 415 YNCIVDLLGRSGCLDEAEALILSMPVRADGVIWKTLLSACKTQKNFDMAERIAERVIESD 474

Query: 516 PDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSH 575
           P     YV+LSNI A + +W  V+EVR++M+++  RK+PG S +EH+G +H+F  GDKSH
Sbjct: 475 PRDSAPYVLLSNIRATSKRWGDVTEVRKIMREKDIRKEPGVSWVEHKGQVHQFCTGDKSH 534

Query: 576 PQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVK 635
           P+  EI   L EM  K++  G+ PD T V   +ED+ EKE  L +HSE+LAIAF  +N+ 
Sbjct: 535 PRQGEIDEYLKEMMGKIRQCGYAPDMTMVFHDMEDE-EKEVSLTHHSEKLAIAFAFLNLP 593

Query: 636 SRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
              PIR++KNLRVC+DCH   KL+S +  REI+VRD SRFHHF++G CSC D+W
Sbjct: 594 EGVPIRVMKNLRVCDDCHVAIKLISQVTGREIVVRDVSRFHHFRDGRCSCGDYW 647



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/311 (22%), Positives = 139/311 (44%), Gaps = 10/311 (3%)

Query: 69  NNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCV 128
            +L  AR +FD++    ++  +N ++          ++L  F  +    + PD F L  V
Sbjct: 122 GDLGSARELFDKMPTR-NVATWNAMVAGLTNVGLDEDSLQFFLAMRREGMHPDEFGLGSV 180

Query: 129 IKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDL 188
            +  A L  +  G+Q+H  V + G   D  V +SL  MY + G +  G  V  A+    +
Sbjct: 181 FRCCAGLLDVVSGRQVHAYVVRSGMDSDMCVGNSLAHMYMRCGCLAEGEAVLRALPSLTI 240

Query: 189 VSWNCLIDGYVKKGEVEVAMKLFDEM------PDRDLF--SWTCLVDGFSKCGKVEIARE 240
           VS+N  I G  + G+ E A++ F  M      PD   F  + +C  D  +     ++  +
Sbjct: 241 VSFNTTIAGRTQNGDSEGALEYFSMMRGVEVAPDVVTFVSAISCCSDLAALAQGQQVHAQ 300

Query: 241 IFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEA 300
           +     ++ +    ++++ Y + G +  +  ++D     DL   ++MI+    +G+  +A
Sbjct: 301 VIKAGVDKVVPVITSLVHMYSRCGCLGDSERVYDGYCGLDLFLLSAMISACGFHGQGHKA 360

Query: 301 LELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKN-GFVVDGVLGTLLIQ 359
           +EL + M+ G   PN+ T ++ L A +   + ++G      + K  GF         ++ 
Sbjct: 361 VELFKQMMNGGAEPNEVTFLALLYACSHSGLKDEGLEFFELMTKTYGFQPSVKHYNCIVD 420

Query: 360 MYSKCGSIESA 370
           +  + G ++ A
Sbjct: 421 LLGRSGCLDEA 431



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 97/242 (40%), Gaps = 39/242 (16%)

Query: 312 VLPNDATLVSAL-SAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESA 370
           VL +DA+L S +  A   + +L   R +H++   +G   D      L+  Y+  G + +A
Sbjct: 40  VLWSDASLFSHIFRACRAIPLL---RQLHAFAATSGAAADRFTTNNLLLAYADLGDLPTA 96

Query: 371 LTVFRAISKK-------------------------------KVGHWTAMIVGLGMHGMAT 399
             +F  ISK+                                V  W AM+ GL   G+  
Sbjct: 97  RHLFEGISKRNVMSWNILIGGCIKNGDLGSARELFDKMPTRNVATWNAMVAGLTNVGLDE 156

Query: 400 QALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCL 459
            +L  F  M R GM P       V   C+    V  GR+    ++   G++  +     L
Sbjct: 157 DSLQFFLAMRREGMHPDEFGLGSVFRCCAGLLDVVSGRQVHAYVVRS-GMDSDMCVGNSL 215

Query: 460 VDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKD--IGEYAANNLIKVAPD 517
             +  R G L E ++ + ++P     V + + ++G   +G+ +  +  ++    ++VAPD
Sbjct: 216 AHMYMRCGCLAEGEAVLRALP-SLTIVSFNTTIAGRTQNGDSEGALEYFSMMRGVEVAPD 274

Query: 518 TI 519
            +
Sbjct: 275 VV 276


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 234/669 (34%), Positives = 383/669 (57%), Gaps = 25/669 (3%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           + +HA +    L     +S+ L+ LY+         A ++F ++     +V +N ++  Y
Sbjct: 119 RTIHAHAAAVGLHTDLFVSTALIDLYI--RCARFGPAANVFAKMPMR-DVVAWNAMLAGY 175

Query: 98  VFNQRSHEALTLFCDLLDRF-LLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFD 156
             +   H A+    D+ DR  L P+  TL  ++   A+ GA+ +G  +H    +     +
Sbjct: 176 ANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQN 235

Query: 157 K---FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDE 213
           +    + ++L+ MYAK   +    RVF  M  ++ V+W+ LI G+V    +  A  LF +
Sbjct: 236 EEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKD 295

Query: 214 MPDRDLFSWTCLVDGFSKCGKVEIAREIF-YRMPNR------------NLVSWNAMINGY 260
           M    L    C +   S    + +   +   RM  +            +L + N++++ Y
Sbjct: 296 M----LVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKSGIHADLTAGNSLLSMY 351

Query: 261 MKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLV 320
            KAG ++ A  LFD++ I+D I++ ++++GY  NG+  EA  + + M   +V P+ AT+V
Sbjct: 352 AKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQACNVQPDIATMV 411

Query: 321 SALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKK 380
           S + A + LA L  GR  H  ++  G  ++  +   LI MY+KCG I+ +  VF  +  +
Sbjct: 412 SLIPACSHLAALQHGRCSHGSVIIRGLALETSICNSLIDMYAKCGRIDLSRQVFDKMPAR 471

Query: 381 KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYF 440
            +  W  MI G G+HG+  +A  LF  M   G +P  +TFI ++ ACSH+GLV +G+ +F
Sbjct: 472 DIVSWNTMIAGYGIHGLGKEATTLFLSMKNQGFEPDDVTFICLIAACSHSGLVTEGKHWF 531

Query: 441 NMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGN 500
           + M + YGI P +EHY C+VD+L R G+L+EA   I+SMP++ +  +W +LL   R H N
Sbjct: 532 DTMTHKYGILPRMEHYICMVDLLARGGFLDEAYQFIQSMPLKADVRVWGALLGACRIHKN 591

Query: 501 KDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIE 560
            D+G+  +  + K+ P+  G +V+LSNI++AAG++D+ +EVR + K +GF+K PG S IE
Sbjct: 592 IDLGKQVSRMIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGCSWIE 651

Query: 561 HRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELEN 620
             G LH FV GD+SHP + +I+ +L  +   +K  G+  DT+ VL  +E++++++A L  
Sbjct: 652 INGSLHAFVGGDQSHPCSPDIYHELDNILIDIKKLGYQADTSFVLQDLEEEEKEKALLY- 710

Query: 621 HSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKN 680
           HSE+LAIAFG++++     I + KNLRVC DCH+  K ++ + NR IIVRD +RFHHFKN
Sbjct: 711 HSEKLAIAFGVLSLNEDKTIFVTKNLRVCGDCHTAIKYMTLVRNRTIIVRDANRFHHFKN 770

Query: 681 GSCSCKDFW 689
           G CSC DFW
Sbjct: 771 GQCSCGDFW 779



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 123/452 (27%), Positives = 217/452 (48%), Gaps = 20/452 (4%)

Query: 64  VDPHI--NNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPD 121
           ++ HI    L  AR +FDRI   P    YN LI+ Y +    H A+ L+  +L   + P+
Sbjct: 40  LEQHIARGQLALARQVFDRI-PAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPN 98

Query: 122 NFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFD 181
            +T P V+K  + L  +  G+ IH     +G   D FV ++L+ +Y +         VF 
Sbjct: 99  KYTFPFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFA 158

Query: 182 AMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR-----DLFSWTCLVDGFSKCGKVE 236
            M  +D+V+WN ++ GY   G    A+    +M DR     +  +   L+   ++ G + 
Sbjct: 159 KMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALF 218

Query: 237 IAREI-------FYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIA 289
               +       +       ++   A+++ Y K   +  AC +F  M +R+ +TW+++I 
Sbjct: 219 QGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIG 278

Query: 290 GYELNGRFMEALELLETMLI-GDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFV 348
           G+ L  R  EA  L + ML+ G    +  ++ SAL   A LA L  G  +H+ + K+G  
Sbjct: 279 GFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKSGIH 338

Query: 349 VDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKM 408
            D   G  L+ MY+K G I  A  +F  I+ K    + A++ G   +G A +A  +F KM
Sbjct: 339 ADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKM 398

Query: 409 CRMGMKPTAITFIGVLNACSHAGLVNDGR-RYFNMMINDYGIEPTIEHYGCLVDILCRTG 467
               ++P   T + ++ ACSH   +  GR  + +++I    +E +I     L+D+  + G
Sbjct: 399 QACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSI--CNSLIDMYAKCG 456

Query: 468 YLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
            ++ ++   + MP R + V W ++++G   HG
Sbjct: 457 RIDLSRQVFDKMPAR-DIVSWNTMIAGYGIHG 487



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 108/245 (44%), Gaps = 4/245 (1%)

Query: 253 WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDV 312
           W   +  ++  G +  A ++FD +   D   +N++I  Y   G F  A++L  +ML   V
Sbjct: 36  WQQELEQHIARGQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRV 95

Query: 313 LPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALT 372
            PN  T    L A + LA L  GR +H++    G   D  + T LI +Y +C     A  
Sbjct: 96  PPNKYTFPFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAAN 155

Query: 373 VFRAISKKKVGHWTAMIVGLGMHGMATQAL-DLFNKMCRMGMKPTAITFIGVLNACSHAG 431
           VF  +  + V  W AM+ G   HGM   A+  L +   R G++P A T + +L   +  G
Sbjct: 156 VFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHG 215

Query: 432 LVNDGRRYFNMMINDY--GIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWM 489
            +  G       +  Y    E  +     L+D+  +  +L  A      M +R N V W 
Sbjct: 216 ALFQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVR-NEVTWS 274

Query: 490 SLLSG 494
           +L+ G
Sbjct: 275 ALIGG 279


>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 232/585 (39%), Positives = 334/585 (57%), Gaps = 41/585 (7%)

Query: 144 IHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGE 203
           IH  + + G   D F++  L+   +K   ID   R+F    + ++  +  LIDG+V  G 
Sbjct: 68  IHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGN 127

Query: 204 VEVAMKLFDEM------PDRDL----------------------------FSWTCLV--- 226
              A++L+  M      PD  L                            FS   LV   
Sbjct: 128 YLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALKLGFSSNRLVRLR 187

Query: 227 --DGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITW 284
             + + KCG++  AR +F  MP  ++V+   MI+ Y   G V+ A  +F  +  +D + W
Sbjct: 188 IMELYGKCGELGDARRVFEEMPE-DVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCW 246

Query: 285 NSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVK 344
            +MI G+  N     ALE    M   +V PN+ T+V  LSA + L  L  GRW+HSY+ K
Sbjct: 247 TAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRK 306

Query: 345 NGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDL 404
               ++  +G  LI MYS+CGSI+ A TVF  +  + V  +  MI GL M+G + QA++L
Sbjct: 307 FEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIEL 366

Query: 405 FNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILC 464
           F  M    ++PT +TF+GVLNACSH GLV+ G   F+ M  DY +EP IEHYGC+VD+L 
Sbjct: 367 FRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLG 426

Query: 465 RTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVV 524
           R G LEEA   I +M M P+ ++  +LLS  + H N ++GE  A  L        G YV+
Sbjct: 427 RVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRGQADSGTYVL 486

Query: 525 LSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSK 584
           LS++YA++G+W + ++VR  MK+ G +K+PG SSIE    +HEF++GD  HPQ + I+ K
Sbjct: 487 LSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPQKERIYEK 546

Query: 585 LSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVK 644
           L E+   L+  G+ P+   VL  IED  EKE  L  HSERLAI +GLI+ +  + IR++K
Sbjct: 547 LEELNRLLRLEGYHPEKEVVLQDIED-GEKEWALAMHSERLAICYGLISTEPCTMIRVMK 605

Query: 645 NLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           NLRVC DCHS  KL++ I  R+I+VRD +RFH+F+NG+CSC D+W
Sbjct: 606 NLRVCYDCHSAIKLIAKITRRKIVVRDRNRFHYFENGACSCGDYW 650



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 110/395 (27%), Positives = 181/395 (45%), Gaps = 72/395 (18%)

Query: 71  LHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIK 130
           + YA  IF +   +P++ LY  LI  +V +    EA+ L+  +L   +LPDN+ +  ++K
Sbjct: 97  IDYASRIF-QYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILK 155

Query: 131 GAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD----- 185
                 A++EG+++H    KLGF  ++ V   ++ +Y K GE+   RRVF+ M +     
Sbjct: 156 ACGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAS 215

Query: 186 -------------------------KDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL- 219
                                    KD V W  +IDG+V+  E   A++ F  M   ++ 
Sbjct: 216 TVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVR 275

Query: 220 ---FSWTCLVDGFSKCGKVEIAREIFYRMP----NRNLVSWNAMINGYMKAGDVDSACEL 272
              F+  C++   S+ G +EI R +   M       NL   NA+IN Y + G +D A  +
Sbjct: 276 PNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTV 335

Query: 273 FDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVL 332
           FD+M+ RD+IT+N+MI+G  +NG+  +A+EL   M+   + P + T V  L+A +     
Sbjct: 336 FDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACS----- 390

Query: 333 NKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGL 392
                 H  +V  GF +                   S    +R   + ++ H+  M+  L
Sbjct: 391 ------HGGLVDFGFEI-----------------FHSMARDYRV--EPQIEHYGCMVDLL 425

Query: 393 GMHGMATQALDLFNKMCRMGMKPTAITFIGVLNAC 427
           G  G   +A DL      M M P  I    +L+AC
Sbjct: 426 GRVGRLEEAYDLIRT---MKMTPDHIMLGTLLSAC 457



 Score = 99.4 bits (246), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 155/328 (47%), Gaps = 35/328 (10%)

Query: 56  SSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLD 115
           S+ ++S Y D  +  +  A ++F R+ +    V +  +I  +V N+ ++ AL  F  +  
Sbjct: 215 STVMISSYSDQGL--VEEAGAVFSRV-RRKDTVCWTAMIDGFVRNEETNRALEAFRGMQG 271

Query: 116 RFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDL 175
             + P+ FT+ CV+   ++LGA++ G+ +H  + K     + FV ++L++MY++ G ID 
Sbjct: 272 ENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDE 331

Query: 176 GRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSK 231
            + VFD M D+D++++N +I G    G+   A++LF  M  R L     ++  +++  S 
Sbjct: 332 AQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSH 391

Query: 232 CGKVEIAREIFYRMPNRNLVS-----WNAMINGYMKAGDVDSACELFDDMEIRDLITWNS 286
            G V+   EIF+ M     V      +  M++   + G ++ A          DLI    
Sbjct: 392 GGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEA---------YDLIRTMK 442

Query: 287 MIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVL------NKGRWMHS 340
           M   + + G  + A ++ + + +G+ +  +  L     A +G  VL      + G+W  +
Sbjct: 443 MTPDHIMLGTLLSACKMHKNLELGEQVAKE--LEDRGQADSGTYVLLSHVYASSGKWKEA 500

Query: 341 YIVKNGFVVDGVLGTLLIQMYSKCGSIE 368
             V+      G      +Q    C SIE
Sbjct: 501 AQVRAKMKEAG------MQKEPGCSSIE 522


>gi|302763761|ref|XP_002965302.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
 gi|300167535|gb|EFJ34140.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
          Length = 600

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/577 (37%), Positives = 343/577 (59%), Gaps = 13/577 (2%)

Query: 124 TLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAM 183
           T   ++K  A   A+ EGK++H  + K G+  D+ + + L+ MY K G I   R VFD +
Sbjct: 26  TYVLLLKKCADSKALLEGKRVHSCLVKDGYASDRLIANLLIEMYGKCGGIAEARSVFDQI 85

Query: 184 DDK--DLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFS-WTCLVDGFSKC-------- 232
            +K  D++SWN +I  Y + G  + A+ LF  M    + +    L++    C        
Sbjct: 86  QEKNADVISWNGIIGAYTQNGLGKEALHLFKTMDLEGVIANQVTLINAIDACASLPSEEE 145

Query: 233 GKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYE 292
           G++  A  +  R+ +  +V   +++N + K  +VD+A  +FD +  ++L+TWN+M+A Y 
Sbjct: 146 GRIVHAIAVDKRLESDTMVG-TSLVNMFGKCKNVDAARAVFDSLPRKNLVTWNNMVAVYS 204

Query: 293 LNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV 352
            N +  +A+++   M +  V P+  T ++ + A A LA   +GR +H  I  +G  +D  
Sbjct: 205 QNWQCKKAIQVFRFMDLEGVQPDAVTFLTIIDACAALAAHTEGRMVHDDITASGIPMDVA 264

Query: 353 LGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG 412
           LGT ++  Y KCG +++A  +F ++ KK    W+A++     +G  T+A++L+++M + G
Sbjct: 265 LGTAVMHFYGKCGRLDNARAIFDSLGKKNTVTWSAILAAYAQNGYETEAIELYHEMVQGG 324

Query: 413 MKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEA 472
           ++   ITF+G+L ACSHAG   DG  YF  MI D+G+ P  EHY  L+D+L R+G L+ +
Sbjct: 325 LEVNGITFLGLLFACSHAGRSMDGVDYFVSMIRDFGVVPVFEHYLNLIDLLGRSGQLQLS 384

Query: 473 KSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAA 532
           +  I SMP  P+   W++LL   R HG+ D G   A  + ++ P+  G Y++LSN+Y++ 
Sbjct: 385 EDLINSMPYEPDSSAWLALLGACRMHGDVDRGARIAELIYELDPEDSGPYILLSNLYSST 444

Query: 533 GQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKL 592
           G+ D+    R+ M+ RG  K PG SSIE +  +HEF+   K HPQ   IH+++  ++ ++
Sbjct: 445 GRMDEARRTRKAMRLRGITKQPGLSSIEVKDRVHEFMAAQKLHPQLGRIHAEIERLKARV 504

Query: 593 KAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDC 652
           K AG+V D   VL  +E++ EKE  L  HSERLAIAFGLI+    + + IVKNLRVC DC
Sbjct: 505 KEAGYVADVRAVLRDVEEE-EKEQLLWYHSERLAIAFGLISTPPGTALHIVKNLRVCFDC 563

Query: 653 HSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           H+  K +S +  R+I+VRD  RFHHF+NG+CSC D+W
Sbjct: 564 HAAVKAISKVVGRKIVVRDAIRFHHFENGACSCGDYW 600



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 117/457 (25%), Positives = 210/457 (45%), Gaps = 48/457 (10%)

Query: 36  ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQ-HPSLVLYNLLI 94
           E +++H+  VK        I++ L+ +Y       +  ARS+FD+I + +  ++ +N +I
Sbjct: 42  EGKRVHSCLVKDGYASDRLIANLLIEMY--GKCGGIAEARSVFDQIQEKNADVISWNGII 99

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
             Y  N    EAL LF  +    ++ +  TL   I   A L + +EG+ +H +       
Sbjct: 100 GAYTQNGLGKEALHLFKTMDLEGVIANQVTLINAIDACASLPSEEEGRIVHAIAVDKRLE 159

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
            D  V +SLV+M+ K   +D  R VFD++  K+LV+WN ++  Y +  + + A+++F  M
Sbjct: 160 SDTMVGTSLVNMFGKCKNVDAARAVFDSLPRKNLVTWNNMVAVYSQNWQCKKAIQVFRFM 219

Query: 215 P----DRDLFSWTCLVDGFSKCGKVEIAR----EIFYRMPNRNLVSWNAMINGYMKAGDV 266
                  D  ++  ++D  +        R    +I       ++    A+++ Y K G +
Sbjct: 220 DLEGVQPDAVTFLTIIDACAALAAHTEGRMVHDDITASGIPMDVALGTAVMHFYGKCGRL 279

Query: 267 DSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326
           D+A  +FD +  ++ +TW++++A Y  NG   EA+EL   M+ G +  N  T +  L A 
Sbjct: 280 DNARAIFDSLGKKNTVTWSAILAAYAQNGYETEAIELYHEMVQGGLEVNGITFLGLLFAC 339

Query: 327 AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWT 386
           +     + GR M           DGV     + M    G +     VF         H+ 
Sbjct: 340 S-----HAGRSM-----------DGV--DYFVSMIRDFGVV----PVFE--------HYL 369

Query: 387 AMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIND 446
            +I  LG  G    + DL N    M  +P +  ++ +L AC   G V+ G R   ++   
Sbjct: 370 NLIDLLGRSGQLQLSEDLINS---MPYEPDSSAWLALLGACRMHGDVDRGARIAELI--- 423

Query: 447 YGIEPTIE-HYGCLVDILCRTGYLEEAKSTIESMPMR 482
           Y ++P     Y  L ++   TG ++EA+ T ++M +R
Sbjct: 424 YELDPEDSGPYILLSNLYSSTGRMDEARRTRKAMRLR 460



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 104/222 (46%), Gaps = 6/222 (2%)

Query: 317 ATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRA 376
           +T V  L   A    L +G+ +HS +VK+G+  D ++  LLI+MY KCG I  A +VF  
Sbjct: 25  STYVLLLKKCADSKALLEGKRVHSCLVKDGYASDRLIANLLIEMYGKCGGIAEARSVFDQ 84

Query: 377 ISKKK--VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVN 434
           I +K   V  W  +I     +G+  +AL LF  M   G+    +T I  ++AC+      
Sbjct: 85  IQEKNADVISWNGIIGAYTQNGLGKEALHLFKTMDLEGVIANQVTLINAIDACASLPSEE 144

Query: 435 DGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLS- 493
           +GR    + + D  +E        LV++  +   ++ A++  +S+P R N V W ++++ 
Sbjct: 145 EGRIVHAIAV-DKRLESDTMVGTSLVNMFGKCKNVDAARAVFDSLP-RKNLVTWNNMVAV 202

Query: 494 -GARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQ 534
                   K I  +   +L  V PD +    ++    A A  
Sbjct: 203 YSQNWQCKKAIQVFRFMDLEGVQPDAVTFLTIIDACAALAAH 244


>gi|317106766|dbj|BAJ53258.1| JMS10C05.1 [Jatropha curcas]
          Length = 563

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 221/545 (40%), Positives = 336/545 (61%), Gaps = 17/545 (3%)

Query: 158 FVLSSLVSMYA--KFGEIDLGRRVFDAMDDKDLVSWNCLIDG--YVKKGEVEVAMKLFDE 213
           F++S ++S  A   FG  D  R++F  + +  + ++N +I G  Y K    E  + LF +
Sbjct: 23  FLISKILSFAALSPFGNFDYARKIFSQIPNPGIFAYNSVIRGCLYTKIPSKE-PIHLFKD 81

Query: 214 M-----PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS----WNAMINGYMKAG 264
           M     P+ + F+   ++   S    +E  ++I  ++      S     ++++N Y K  
Sbjct: 82  MVGKGYPNPNTFTMAFVLKACSIIMALEEGKQIHAQILRSGFSSSPYVQSSLVNFYSKCE 141

Query: 265 DVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS 324
           ++  A ++FD++  R+L+ W++M++GY   G   EAL +   M +  + P++ +LV  LS
Sbjct: 142 EITIARKVFDEITERNLVCWSAMVSGYARLGMINEALIMFREMQVVGIEPDEVSLVGVLS 201

Query: 325 AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGH 384
           A A +  L+ G+W+H+YI K    VD  L T LI MY+KCG IE A  +F  +  K    
Sbjct: 202 ACAMVGALDIGKWVHAYIKKRMIHVDLELNTALINMYAKCGCIEKAREIFDEMRVKDSKA 261

Query: 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMI 444
           W++MIVGL +HG+A  AL++F++M     KP  +TFIG+L+AC+H GLV+DG+RY++ M+
Sbjct: 262 WSSMIVGLAIHGLAEDALNVFSRMEEAQAKPNHVTFIGILSACAHGGLVSDGKRYWSSML 321

Query: 445 NDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIG 504
            + GIEP++EHYGC+VD+LCR G ++EA      +P  P+ VIW +LL     +      
Sbjct: 322 -ELGIEPSMEHYGCMVDLLCRGGLIDEAYDFALIIPT-PDPVIWRTLLVAYTKNRMLQKA 379

Query: 505 EYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGV 564
           E  A  L+++ P     Y++L+N+YA+  Q +KVS VR+MMK+ G +  PG +SIE  G 
Sbjct: 380 EMVAGKLLELEPWKAENYIILANLYASVSQLEKVSHVRKMMKENGIKALPGCTSIEVDGF 439

Query: 565 LHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSER 624
           +H FV GD SHP+ +EI   L ++  K+  +G+ P  + VL  + D+ EKE  L  HSER
Sbjct: 440 VHNFVTGDWSHPEAEEIKKTLRDVALKILISGYKPFVSVVLHLVNDE-EKENVLYEHSER 498

Query: 625 LAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCS 684
           LAIA+GL+  K+ + IRIVKNLRVC DCH VTK++S IY+REIIVRD  RFH F NG+CS
Sbjct: 499 LAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVNGTCS 558

Query: 685 CKDFW 689
           CKD+W
Sbjct: 559 CKDYW 563



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 110/377 (29%), Positives = 191/377 (50%), Gaps = 15/377 (3%)

Query: 38  QQLHALSVKTNLIYHSGIS---SRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           +Q+HA  + T++   S +S   S++LS        N  YAR IF +I  +P +  YN +I
Sbjct: 5   RQIHA-RILTHVPPISSVSFLISKILSFAALSPFGNFDYARKIFSQI-PNPGIFAYNSVI 62

Query: 95  K-CYVFNQRSHEALTLFCDLLDR-FLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLG 152
           + C      S E + LF D++ + +  P+ FT+  V+K  + + A++EGKQIH  + + G
Sbjct: 63  RGCLYTKIPSKEPIHLFKDMVGKGYPNPNTFTMAFVLKACSIIMALEEGKQIHAQILRSG 122

Query: 153 FGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFD 212
           F    +V SSLV+ Y+K  EI + R+VFD + +++LV W+ ++ GY + G +  A+ +F 
Sbjct: 123 FSSSPYVQSSLVNFYSKCEEITIARKVFDEITERNLVCWSAMVSGYARLGMINEALIMFR 182

Query: 213 EMP----DRDLFSWTCLVDGFSKCGKVEIAR----EIFYRMPNRNLVSWNAMINGYMKAG 264
           EM     + D  S   ++   +  G ++I +     I  RM + +L    A+IN Y K G
Sbjct: 183 EMQVVGIEPDEVSLVGVLSACAMVGALDIGKWVHAYIKKRMIHVDLELNTALINMYAKCG 242

Query: 265 DVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS 324
            ++ A E+FD+M ++D   W+SMI G  ++G   +AL +   M      PN  T +  LS
Sbjct: 243 CIEKAREIFDEMRVKDSKAWSSMIVGLAIHGLAEDALNVFSRMEEAQAKPNHVTFIGILS 302

Query: 325 AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGH 384
           A A   +++ G+   S +++ G          ++ +  + G I+ A      I       
Sbjct: 303 ACAHGGLVSDGKRYWSSMLELGIEPSMEHYGCMVDLLCRGGLIDEAYDFALIIPTPDPVI 362

Query: 385 WTAMIVGLGMHGMATQA 401
           W  ++V    + M  +A
Sbjct: 363 WRTLLVAYTKNRMLQKA 379


>gi|356496086|ref|XP_003516901.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 225/568 (39%), Positives = 349/568 (61%), Gaps = 14/568 (2%)

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYA--KFGEIDLGRRVFDAMDDKDLVSW 191
           R  +++E K++H  + KLG  +D F  S+LV+  A  ++G ++    +F  +++     +
Sbjct: 40  RCKSMEEFKKVHAHILKLGLFYDSFCGSNLVASCALSRWGSMEYACSIFRQIEEPGSFEY 99

Query: 192 NCLIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFS-----KCGKVEIAREIF 242
           N +I G V   ++E A+ L+ EM +R    D F++  ++   S     K G V+I   +F
Sbjct: 100 NTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLVALKEG-VQIHAHVF 158

Query: 243 YRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALE 302
                 ++   N +I+ Y K G ++ A  +F+ M+ + + +W+S+I  +     + E L 
Sbjct: 159 NAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHASVEMWHECLM 218

Query: 303 LLETM-LIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMY 361
           LL  M   G     ++ LVSALSA   L   N GR +H  +++N   ++ V+ T LI MY
Sbjct: 219 LLGDMSREGRHRAEESILVSALSACTHLGSPNLGRCIHGILLRNISELNVVVKTSLIDMY 278

Query: 362 SKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFI 421
            KCGS+E  L VF+ ++ K    +T MI GL +HG   +AL +F+ M   G+ P  + ++
Sbjct: 279 VKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHGRGREALRVFSDMLEEGLTPDDVVYV 338

Query: 422 GVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPM 481
           GVL+ACSHAGLV +G + FN M  ++ I+PTI+HYGC+VD++ R G L+EA   I+SMP+
Sbjct: 339 GVLSACSHAGLVKEGFQCFNRMQFEHMIKPTIQHYGCMVDLMGRAGMLKEAYDLIKSMPI 398

Query: 482 RPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEV 541
           +PN V+W SLLS  + H N +IGE AA+N+ K+     G Y+VL+N+YA A +W  V+ +
Sbjct: 399 KPNDVVWRSLLSACKVHHNLEIGEIAADNIFKLNKHNPGDYLVLANMYARAQKWANVARI 458

Query: 542 REMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDT 601
           R  M ++   + PG S +E    +++FV  DKS PQ + I+  + +M  +LK  G+ PD 
Sbjct: 459 RTEMVEKNLVQTPGFSLVEANRNVYKFVSQDKSQPQCETIYDMIQQMEWQLKFEGYTPDM 518

Query: 602 TQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSG 661
           +QVLL + D+ EK   L++HS++LAIAF LI     SP+RI +NLR+CNDCH+ TK +S 
Sbjct: 519 SQVLLDV-DEDEKRQRLKHHSQKLAIAFALIQTSEGSPVRISRNLRMCNDCHTYTKFISV 577

Query: 662 IYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           IY REI VRD++RFHHFK+G+CSCKD+W
Sbjct: 578 IYEREITVRDSNRFHHFKDGTCSCKDYW 605



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 122/411 (29%), Positives = 196/411 (47%), Gaps = 43/411 (10%)

Query: 26  NILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHP 85
           ++LK   + +E +++HA  +K  L Y S   S L++        ++ YA SIF R ++ P
Sbjct: 36  SLLKRCKSMEEFKKVHAHILKLGLFYDSFCGSNLVASCALSRWGSMEYACSIF-RQIEEP 94

Query: 86  SLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIH 145
               YN +I+  V +    EAL L+ ++L+R + PDNFT P V+K  + L A+KEG QIH
Sbjct: 95  GSFEYNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLVALKEGVQIH 154

Query: 146 GLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVE 205
             VF  G   D FV + L+SMY K G I+    VF+ MD+K + SW+ +I  +       
Sbjct: 155 AHVFNAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHASVEMWH 214

Query: 206 VAMKLFDEMP--DRDLFSWTCLVDGFSKC---GKVEIAREI----FYRMPNRNLVSWNAM 256
             + L  +M    R     + LV   S C   G   + R I       +   N+V   ++
Sbjct: 215 ECLMLLGDMSREGRHRAEESILVSALSACTHLGSPNLGRCIHGILLRNISELNVVVKTSL 274

Query: 257 INGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPND 316
           I+ Y+K G ++    +F +M  ++  ++  MIAG  ++GR  EAL +   ML   + P+D
Sbjct: 275 IDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHGRGREALRVFSDMLEEGLTPDD 334

Query: 317 ATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRA 376
              V  LSA +           H+ +VK GF           Q +++          F  
Sbjct: 335 VVYVGVLSACS-----------HAGLVKEGF-----------QCFNR--------MQFEH 364

Query: 377 ISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNAC 427
           + K  + H+  M+  +G  GM  +A DL      M +KP  + +  +L+AC
Sbjct: 365 MIKPTIQHYGCMVDLMGRAGMLKEAYDLIKS---MPIKPNDVVWRSLLSAC 412


>gi|297745420|emb|CBI40500.3| unnamed protein product [Vitis vinifera]
          Length = 1133

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/630 (34%), Positives = 350/630 (55%), Gaps = 45/630 (7%)

Query: 104  HEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSL 163
            H  L +F +L  + ++ D+      +K   R+  I  G +IHG + K GF  D ++  +L
Sbjct: 505  HIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCAL 564

Query: 164  VSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP-------- 215
            ++ Y +   ++   +VF  M + + + WN  I   ++  +++  ++LF +M         
Sbjct: 565  MNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAET 624

Query: 216  --------------------------------DRDLFSWTCLVDGFSKCGKVEIAREIFY 243
                                            D D++  T L+D + K   +  A+ +F 
Sbjct: 625  ATIVRVLQASISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFD 684

Query: 244  RMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIR----DLITWNSMIAGYELNGRFME 299
             M NRN+ +WN++++GY   G  + A  L + ME      DL+TWN MI+GY + G   E
Sbjct: 685  NMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKE 744

Query: 300  ALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQ 359
            AL     M    V+PN A++   L A A L++L KG+ +H   ++NGF+ D  + T LI 
Sbjct: 745  ALAFFAQMQQEGVMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALID 804

Query: 360  MYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAIT 419
            MYSK  S+++A  VFR I  K +  W  MI+G  + G+  +A+ +FN+M ++G+ P AIT
Sbjct: 805  MYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAIT 864

Query: 420  FIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM 479
            F  +L+AC ++GL+ +G +YF+ MI DY I P +EHY C+VD+L R GYL+EA   I +M
Sbjct: 865  FTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTM 924

Query: 480  PMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVS 539
            P++P+  IW +LL   R H N    E AA NL K+ P+    Y+++ N+Y+   +W+ + 
Sbjct: 925  PLKPDATIWGALLGSCRIHKNLKFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMD 984

Query: 540  EVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVP 599
             +RE+M   G R     S I+    +H F   +K HP   +I+ +L ++ +++K  G+VP
Sbjct: 985  HLRELMGAAGVRNRQVWSWIQINQRVHVFSSDEKPHPDAGKIYFELYQLVSEMKKLGYVP 1044

Query: 600  DTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLL 659
            D   V   + D+ EK+  L +H+E+LAI +GLI +K+  PIR++KN R+C+DCHS  K +
Sbjct: 1045 DVNCVYQNM-DEVEKQKILLSHTEKLAITYGLIKMKAGEPIRVIKNTRICSDCHSAAKYI 1103

Query: 660  SGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            S +  RE+ +RD  RFHHF+ G CSC DFW
Sbjct: 1104 SLVKARELFLRDGVRFHHFREGKCSCNDFW 1133



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 154/335 (45%), Gaps = 12/335 (3%)

Query: 162 SLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGY-VKKGEVEVAMKLFDEMPDRDL- 219
           +L+S Y  FG+      VF     ++ + WN  ++ +    G + + +++F E+  + + 
Sbjct: 461 NLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVV 520

Query: 220 FSWTCLVDGFSKCGKV-------EIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACEL 272
           F           C +V       EI   +  R  + ++    A++N Y +   ++ A ++
Sbjct: 521 FDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQV 580

Query: 273 FDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSA-VAGLAV 331
           F +M   + + WN  I     + +  + +EL   M    +    AT+V  L A ++ L  
Sbjct: 581 FHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQASISELGF 640

Query: 332 LNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVG 391
           LN G+  H Y+++NGF  D  +GT LI MY K  S+ SA  VF  +  + +  W +++ G
Sbjct: 641 LNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSG 700

Query: 392 LGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP 451
               GM   AL L N+M + G+KP  +T+ G+++  +  G   +   +F  M  + G+ P
Sbjct: 701 YSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAFFAQMQQE-GVMP 759

Query: 452 TIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFV 486
                 CL+        L++ K  I  + +R  F+
Sbjct: 760 NSASITCLLRACASLSLLQKGKE-IHCLSIRNGFI 793



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 97/404 (24%), Positives = 177/404 (43%), Gaps = 84/404 (20%)

Query: 71  LHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIK 130
           L  A  +F   + +P  +L+N  I   + +++  + + LF  +   FL  +  T+  V++
Sbjct: 574 LEKANQVFHE-MPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQ 632

Query: 131 GA-ARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLV 189
            + + LG +  GK+ HG V + GF  D +V +SL+ MY K   +   + VFD M ++++ 
Sbjct: 633 ASISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIF 692

Query: 190 SWNCLIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSK--CGKVEIAREIFY 243
           +WN L+ GY  KG  E A++L ++M       DL +W  ++ G++   CGK  +A   F+
Sbjct: 693 AWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALA---FF 749

Query: 244 R-------MPN---------------------------------RNLVSWNAMINGYMKA 263
                   MPN                                  ++    A+I+ Y K+
Sbjct: 750 AQMQQEGVMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKS 809

Query: 264 GDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSAL 323
             + +A ++F  ++ + L +WN MI G+ + G   EA+ +   M    V P+  T  + L
Sbjct: 810 SSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALL 869

Query: 324 SAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVG 383
           SA     ++ +G W +                            +S +T +R +   ++ 
Sbjct: 870 SACKNSGLIGEG-WKY---------------------------FDSMITDYRIVP--RLE 899

Query: 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNAC 427
           H+  M+  LG  G   +A DL +    M +KP A  +  +L +C
Sbjct: 900 HYCCMVDLLGRAGYLDEAWDLIHT---MPLKPDATIWGALLGSC 940



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 114/229 (49%), Gaps = 14/229 (6%)

Query: 85  PSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQI 144
           P LV +N +I  Y       EAL  F  +    ++P++ ++ C+++  A L  +++GK+I
Sbjct: 724 PDLVTWNGMISGYAMWGCGKEALAFFAQMQQEGVMPNSASITCLLRACASLSLLQKGKEI 783

Query: 145 HGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEV 204
           H L  + GF  D FV ++L+ MY+K   +    +VF  + +K L SWNC+I G+   G  
Sbjct: 784 HCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLG 843

Query: 205 EVAMKLFDEMPD----RDLFSWTCLVDGFSKCGKVEIAREIF------YRMPNRNLVSWN 254
           + A+ +F+EM       D  ++T L+      G +    + F      YR+  R L  + 
Sbjct: 844 KEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPR-LEHYC 902

Query: 255 AMINGYMKAGDVDSACELFDDMEIR-DLITWNSMIAGYEL--NGRFMEA 300
            M++   +AG +D A +L   M ++ D   W +++    +  N +F E 
Sbjct: 903 CMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLKFAET 951


>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 599

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 219/558 (39%), Positives = 330/558 (59%), Gaps = 12/558 (2%)

Query: 142 KQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKK 201
           +Q+H  +   G    + +L+ L+S+    G I   RR+F  + + D   ++ L+    K 
Sbjct: 44  QQVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKF 103

Query: 202 G-EVEVAM----KLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMP----NRNLVS 252
           G  ++  +     LF   P  + +++T ++   +    + + +EI   +       ++  
Sbjct: 104 GFSIDTVLFYRRMLFSGAPQSN-YTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYV 162

Query: 253 WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDV 312
             A+I  Y KA D+  A ++FD M  R +I WNS+I+GY+ NG   E++ L   M+    
Sbjct: 163 QAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGF 222

Query: 313 LPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALT 372
            P+ AT+VS LS+ + L  L+ G W+H Y   NGF ++ VLGT LI MY++CG++  A  
Sbjct: 223 QPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKARE 282

Query: 373 VFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGL 432
           VF ++ ++ V  WTAMI G GMHG   QA++LF +M   G +P  ITF+ VL+AC+H+GL
Sbjct: 283 VFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGL 342

Query: 433 VNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIES-MPMRPNFVIWMSL 491
           ++DGRR F+ M   YG+ P +EH  C+VD+  R G L +A   I+  +P  P   +W S+
Sbjct: 343 IDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSM 402

Query: 492 LSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFR 551
           L   R H N D+G   A +++ V P+  G YV+LSNIYA AG+ D+V  VR MM +R  +
Sbjct: 403 LGACRMHRNFDLGVKVAEHVLSVEPENPGHYVMLSNIYALAGRMDRVEMVRNMMTRRRLK 462

Query: 552 KDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQ 611
           K  G S+IE     + F +GDKSHPQT+ I+  L E+  +   +G+VP    ++  +E++
Sbjct: 463 KQVGYSTIEINRKTYLFSMGDKSHPQTNTIYRYLDELMCRCSESGYVPAPESLMHDLEEE 522

Query: 612 KEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRD 671
            E++  L  HSE+LA+AFGL+       IRIVKNLR+C DCHS  K +S I +REIIVRD
Sbjct: 523 -ERDYALRYHSEKLALAFGLLKTNQGETIRIVKNLRICEDCHSAIKHISIIADREIIVRD 581

Query: 672 NSRFHHFKNGSCSCKDFW 689
             RFHHFK+GSCSC D+W
Sbjct: 582 KFRFHHFKDGSCSCLDYW 599



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 116/440 (26%), Positives = 197/440 (44%), Gaps = 81/440 (18%)

Query: 1   MQTQTLQHSSPIHA---LQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISS 57
           +QTQ L    P+      Q H P  +H  +L+     +  QQ+HA  + + L     + +
Sbjct: 6   LQTQQLAFQHPVTRNFDTQSHSP--VHEALLRSGPRLRNLQQVHAHIIVSGLHRSRSLLT 63

Query: 58  RLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRF 117
           +L+SL       ++ YAR +F  +  +P   L++ L+K       S + +  +  +L   
Sbjct: 64  KLISLVCTA--GSITYARRLFPTV-PNPDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSG 120

Query: 118 LLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGR 177
               N+T   VIK  A L A++ GK+IH  V   G+G D +V ++L+++YAK  ++ + +
Sbjct: 121 APQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAK 180

Query: 178 RVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDR-------------- 217
           +VFDAM  + +++WN LI GY + G  + ++ LF  M      PD               
Sbjct: 181 KVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLG 240

Query: 218 --DLFSW-----------------TCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMIN 258
             D   W                 T L++ +++CG V  ARE+F  M  RN+V+W AMI+
Sbjct: 241 ALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMIS 300

Query: 259 GYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDAT 318
           GY                                ++G   +A+EL   M      PN+ T
Sbjct: 301 GY-------------------------------GMHGYGRQAMELFTEMRAYGPRPNNIT 329

Query: 319 LVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTL-LIQMYSKCGSIESALTVFRAI 377
            V+ LSA A   +++ GR + S + +   +V GV   + ++ M+ + G +  A    +  
Sbjct: 330 FVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKF 389

Query: 378 SKKKVGH--WTAMIVGLGMH 395
             K+ G   WT+M+    MH
Sbjct: 390 IPKEPGPAVWTSMLGACRMH 409


>gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Glycine max]
          Length = 629

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 229/590 (38%), Positives = 329/590 (55%), Gaps = 40/590 (6%)

Query: 139 KEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGY 198
           K  + IH    K     D FV   L+ +Y K   ID   ++F    + ++  +  LIDG+
Sbjct: 41  KHVQSIHCHAIKTRTSQDPFVAFELLRVYCKVNYIDHAIKLFRCTQNPNVYLYTSLIDGF 100

Query: 199 VKKGEVEVAMKLFDEMPDR----DLFSWTC------------------------------ 224
           V  G    A+ LF +M  +    D ++ T                               
Sbjct: 101 VSFGSYTDAINLFCQMVRKHVLADNYAVTAMLKACVLQRALGSGKEVHGLVLKSGLGLDR 160

Query: 225 -----LVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIR 279
                LV+ + KCG +E AR++F  MP R++V+   MI      G V+ A E+F++M  R
Sbjct: 161 SIALKLVELYGKCGVLEDARKMFDGMPERDVVACTVMIGSCFDCGMVEEAIEVFNEMGTR 220

Query: 280 DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMH 339
           D + W  +I G   NG F   LE+   M +  V PN+ T V  LSA A L  L  GRW+H
Sbjct: 221 DTVCWTMVIDGLVRNGEFNRGLEVFREMQVKGVEPNEVTFVCVLSACAQLGALELGRWIH 280

Query: 340 SYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMAT 399
           +Y+ K G  V+  +   LI MYS+CG I+ A  +F  +  K V  + +MI GL +HG + 
Sbjct: 281 AYMRKCGVEVNRFVAGALINMYSRCGDIDEAQALFDGVRVKDVSTYNSMIGGLALHGKSI 340

Query: 400 QALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCL 459
           +A++LF++M +  ++P  ITF+GVLNACSH GLV+ G   F  M   +GIEP +EHYGC+
Sbjct: 341 EAVELFSEMLKERVRPNGITFVGVLNACSHGGLVDLGGEIFESMEMIHGIEPEVEHYGCM 400

Query: 460 VDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTI 519
           VDIL R G LEEA   I  M +  +  +  SLLS  + H N  +GE  A  L +      
Sbjct: 401 VDILGRVGRLEEAFDFIGRMGVEADDKMLCSLLSACKIHKNIGMGEKVAKLLSEHYRIDS 460

Query: 520 GCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTD 579
           G +++LSN YA+ G+W   +EVRE M+K G  K+PG SSIE    +HEF  GD  HP+  
Sbjct: 461 GSFIMLSNFYASLGRWSYAAEVREKMEKGGIIKEPGCSSIEVNNAIHEFFSGDLRHPERK 520

Query: 580 EIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSP 639
            I+ KL E+    K  G++P T   L  I+D+ +KE  L  HSERLAI +GL++ ++ + 
Sbjct: 521 RIYKKLEELNYLTKFEGYLPATEVALHDIDDE-QKELALAVHSERLAICYGLVSTEAYTT 579

Query: 640 IRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           +R+ KNLR+C+DCH++ KL++ I  R+I+VRD +RFHHF+NG CSCKD+W
Sbjct: 580 LRVGKNLRICDDCHAMIKLIAKITRRKIVVRDRNRFHHFENGECSCKDYW 629



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 134/475 (28%), Positives = 218/475 (45%), Gaps = 79/475 (16%)

Query: 15  LQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYA 74
           L++ + S LH N        K  Q +H  ++KT       ++  LL +Y    +N + +A
Sbjct: 25  LRRVIISLLHKN----RKNPKHVQSIHCHAIKTRTSQDPFVAFELLRVYCK--VNYIDHA 78

Query: 75  RSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAAR 134
             +F R  Q+P++ LY  LI  +V      +A+ LFC ++ + +L DN+ +  ++K    
Sbjct: 79  IKLF-RCTQNPNVYLYTSLIDGFVSFGSYTDAINLFCQMVRKHVLADNYAVTAMLKACVL 137

Query: 135 LGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCL 194
             A+  GK++HGLV K G G D+ +   LV +Y K G ++  R++FD M ++D+V+   +
Sbjct: 138 QRALGSGKEVHGLVLKSGLGLDRSIALKLVELYGKCGVLEDARKMFDGMPERDVVACTVM 197

Query: 195 IDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM------PNR 248
           I      G VE A+++F+EM  RD   WT ++DG  + G+     E+F  M      PN 
Sbjct: 198 IGSCFDCGMVEEAIEVFNEMGTRDTVCWTMVIDGLVRNGEFNRGLEVFREMQVKGVEPNE 257

Query: 249 ----------------NLVSW-----------------NAMINGYMKAGDVDSACELFDD 275
                            L  W                  A+IN Y + GD+D A  LFD 
Sbjct: 258 VTFVCVLSACAQLGALELGRWIHAYMRKCGVEVNRFVAGALINMYSRCGDIDEAQALFDG 317

Query: 276 MEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKG 335
           + ++D+ T+NSMI G  L+G+ +EA+EL   ML   V PN  T V  L+A +        
Sbjct: 318 VRVKDVSTYNSMIGGLALHGKSIEAVELFSEMLKERVRPNGITFVGVLNACS-------- 369

Query: 336 RWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMH 395
                    +G +VD  LG          G I  ++ +   I + +V H+  M+  LG  
Sbjct: 370 ---------HGGLVD--LG----------GEIFESMEMIHGI-EPEVEHYGCMVDILGRV 407

Query: 396 GMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIE 450
           G   +A D      RMG++        +L+AC     +  G +   ++   Y I+
Sbjct: 408 GRLEEAFDFIG---RMGVEADDKMLCSLLSACKIHKNIGMGEKVAKLLSEHYRID 459


>gi|357470275|ref|XP_003605422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506477|gb|AES87619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 839

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 255/770 (33%), Positives = 391/770 (50%), Gaps = 124/770 (16%)

Query: 40  LHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHP-SLVLYNLLIKCYV 98
           LH     +NL   + + + L++LY     N+   A SIF  +      +V Y+ +I C+ 
Sbjct: 74  LHHKLTTSNLPLDTLLLNSLITLYSKS--NDPITAFSIFQSMENSKRDVVSYSSIISCFA 131

Query: 99  FNQRSHEALTLFCDLL-DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
            N+   +A+ +F  LL    + P+ +    VI+   + G  K G  + G V K G+ FD 
Sbjct: 132 NNRNCLKAVEMFDQLLLQDGVYPNEYCFTAVIRACLKGGFFKTGLCLFGFVLKTGY-FDS 190

Query: 158 FVL--SSLVSMYAK---FGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFD 212
            V     L+ M+ K     +++  R+VFD M +K++V+W  +I    + G  + A+ LF 
Sbjct: 191 HVCVGCELIDMFVKGCSLADLESARKVFDKMREKNVVTWTLMITRLAQYGYNDEAIDLFL 250

Query: 213 EM-------PDR--------------------DLFSWT-------------CLVDGFSKC 232
           EM       PDR                    +L SW               LVD ++KC
Sbjct: 251 EMLVSSGYVPDRFTLTGLISVCAEIQFLSLGKELHSWVIRSGLVLDLCVGCSLVDMYAKC 310

Query: 233 GKVEIAREIFYRMPNRNLVSWNAMINGYMKAGD--------------------------- 265
           G V+ AR++F  M   N++SW A++NGY++ G                            
Sbjct: 311 GLVQEARKVFDGMREHNVMSWTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCFTFS 370

Query: 266 -VDSACELFDDMEIRDLI--------------TWNSMIAGYELNGRFMEALE----LLET 306
            V  AC    D +  + +                N +++ Y  +GR   A +    L E 
Sbjct: 371 GVLKACASLPDFDFGEQVHGQTIKLGLSAIDCVGNGLVSVYAKSGRMESARKCFDVLFEK 430

Query: 307 MLIGDVLPNDA---------------------------TLVSALSAVAGLAVLNKGRWMH 339
            L+ + + +D                            T  S LS  A +  + KG  +H
Sbjct: 431 NLVSETVVDDTNVKDFNLNSEQDLDREVEYVGSGVSSFTYASLLSGAACIGTIGKGEQIH 490

Query: 340 SYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMAT 399
           + +VK GF  D  +   LI MYSKCG+ E+AL VF  +    V  WT++I G   HG A+
Sbjct: 491 AMVVKIGFRTDLSVNNALISMYSKCGNKEAALQVFNDMEDCNVITWTSIINGFAKHGFAS 550

Query: 400 QALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCL 459
           +AL+LF  M   G+KP  +T+I VL+ACSH GL+++  ++F  M +++GI P +EHY C+
Sbjct: 551 KALELFYNMLETGVKPNDVTYIAVLSACSHVGLIDEAWKHFTSMRDNHGIVPRMEHYACM 610

Query: 460 VDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTI 519
           VD+L R+G L EA   I SMP   + ++W + L   R H N  +GE+AA  +++  P   
Sbjct: 611 VDLLGRSGLLSEAIEFINSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKMILEREPHDP 670

Query: 520 GCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTD 579
             Y++LSN+YA  G+W+ V+ +R+ MK++   K+ GSS IE    +H+F VGD  HP+  
Sbjct: 671 ATYILLSNLYATEGRWEDVAAIRKNMKQKQITKEAGSSWIEVENQVHKFHVGDTLHPKAQ 730

Query: 580 EIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSP 639
           +I+ KL E+  K+K  G+VP+T  VL  +ED+ +KE  L  HSE+LA+AF LI+  +  P
Sbjct: 731 QIYEKLDELALKIKNVGYVPNTDFVLHDVEDE-QKEQYLFQHSEKLAVAFALISTPNPKP 789

Query: 640 IRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           IR+ KNLRVC DCH+  K +S +  REI+VRD +RFHH K+G+CSC D+W
Sbjct: 790 IRVFKNLRVCGDCHTAIKYISMVSGREIVVRDANRFHHMKDGTCSCNDYW 839



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 119/479 (24%), Positives = 222/479 (46%), Gaps = 33/479 (6%)

Query: 101 QRSHEALTLFCDLLDRFLLPDN--FTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKF 158
           Q+ H+A+T   +L D     +N   T   ++K   R      GK +H  +       D  
Sbjct: 30  QQLHKAITTL-NLTDTESTHNNKLITSSLLLKQCIRTKNTHLGKLLHHKLTTSNLPLDTL 88

Query: 159 VLSSLVSMYAKFGEIDLGRRVFDAMDD--KDLVSWNCLIDGYVKKGEVEVAMKLFDEM-- 214
           +L+SL+++Y+K  +      +F +M++  +D+VS++ +I  +        A+++FD++  
Sbjct: 89  LLNSLITLYSKSNDPITAFSIFQSMENSKRDVVSYSSIISCFANNRNCLKAVEMFDQLLL 148

Query: 215 -----PDRDLFSW---TCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKA--- 263
                P+   F+     CL  GF K G       +     + ++     +I+ ++K    
Sbjct: 149 QDGVYPNEYCFTAVIRACLKGGFFKTGLCLFGFVLKTGYFDSHVCVGCELIDMFVKGCSL 208

Query: 264 GDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGD-VLPNDATLVSA 322
            D++SA ++FD M  ++++TW  MI      G   EA++L   ML+    +P+  TL   
Sbjct: 209 ADLESARKVFDKMREKNVVTWTLMITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGL 268

Query: 323 LSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKV 382
           +S  A +  L+ G+ +HS+++++G V+D  +G  L+ MY+KCG ++ A  VF  + +  V
Sbjct: 269 ISVCAEIQFLSLGKELHSWVIRSGLVLDLCVGCSLVDMYAKCGLVQEARKVFDGMREHNV 328

Query: 383 GHWTAMIVGL--GMHGMATQALDLF-NKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRY 439
             WTA++ G   G  G   +A+ +F N + + G+ P   TF GVL AC+     + G + 
Sbjct: 329 MSWTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSGVLKACASLPDFDFGEQV 388

Query: 440 FNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
               I   G+         LV +  ++G +E A+   + +    N V    +     +  
Sbjct: 389 HGQTIK-LGLSAIDCVGNGLVSVYAKSGRMESARKCFDVL-FEKNLVSETVV----DDTN 442

Query: 500 NKDIGEYAANNL---IKVAPDTIGCYVVLSNIYAAA--GQWDKVSEVREMMKKRGFRKD 553
            KD    +  +L   ++     +  +   S +  AA  G   K  ++  M+ K GFR D
Sbjct: 443 VKDFNLNSEQDLDREVEYVGSGVSSFTYASLLSGAACIGTIGKGEQIHAMVVKIGFRTD 501


>gi|302754942|ref|XP_002960895.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
 gi|300171834|gb|EFJ38434.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
          Length = 903

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 239/687 (34%), Positives = 381/687 (55%), Gaps = 26/687 (3%)

Query: 20  PSRLHWNI-LKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIF 78
           P+R+   I L   +T ++ Q +H +  ++ L     +S+ L S Y    + +L+ A+ +F
Sbjct: 226 PARITLVIALTVCATIRQAQAIHFIVRESGLEQTLVVSTALASAYA--RLGHLYQAKEVF 283

Query: 79  DRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAI 138
           DR  +   +V +N ++  Y  +    EA  LF  +L   + P   TL   +  +    ++
Sbjct: 284 DRAAER-DVVSWNAMLGAYAQHGHMSEAALLFARMLHEGISPSKVTL---VNASTGCSSL 339

Query: 139 KEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGY 198
           + G+ IHG   + G   D  + ++L+ MY + G  +  R +F  +   + VSWN +I G 
Sbjct: 340 RFGRMIHGCALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFKRIP-CNAVSWNTMIAGS 398

Query: 199 VKKGEVEVAMKLFDEM------PDRDLFS--WTCLVDGFSKCGKVEIAREIFYRMPNRNL 250
            +KG+++ A++LF  M      P R  +      +     +   +   R++  R+ +   
Sbjct: 399 SQKGQMKRAVELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGY 458

Query: 251 VS----WNAMINGYMKAGDVDSACELFDD--MEIR-DLITWNSMIAGYELNGRFMEALEL 303
            S      A++  Y   G +D A   F    ME R D+++WN++I+    +G    AL  
Sbjct: 459 ASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRALGF 518

Query: 304 LETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSK 363
              M +  V PN  T V+ L A AG A L +G  +H ++  +G   +  + T L  MY +
Sbjct: 519 FRRMDLHGVAPNQITCVAVLDACAGAAALTEGEIVHDHLRHSGMESNLFVATALASMYGR 578

Query: 364 CGSIESALTVFRAIS-KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIG 422
           CGS+ESA  +F  ++ ++ V  + AMI     +G+A +AL LF +M + G +P   +F+ 
Sbjct: 579 CGSLESAREIFEKVAVERDVVIFNAMIAAYSQNGLAGEALKLFWRMQQEGSRPDEQSFVS 638

Query: 423 VLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMR 482
           VL+ACSH GL ++G   F  M   YGI P+ +HY C VD+L R G+L +A+  I  M ++
Sbjct: 639 VLSACSHGGLADEGWEIFRSMRQSYGIAPSEDHYACAVDVLGRAGWLADAEELIRCMDVK 698

Query: 483 PNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVR 542
           P  ++W +LL   R + + D G  A + + ++ P     YVVLSNI A AG+WD+ +EVR
Sbjct: 699 PTVLVWKTLLGACRKYRDVDRGRLANSMVRELDPGDESAYVVLSNILAGAGKWDEAAEVR 758

Query: 543 EMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTT 602
             M+ RG RK+ G S IE +  +HEFV GD+SHP+++EI+ +L  +  +++  G+VPDT 
Sbjct: 759 TEMESRGLRKEAGKSWIEIKSRVHEFVAGDRSHPRSEEIYRELERLHAEIREIGYVPDTR 818

Query: 603 QVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGI 662
            VL  + D+ EKE  L  HSERLAIA G+++  S   +R++KNLRVC DCH+ TK +S I
Sbjct: 819 LVLRKV-DEAEKERLLCQHSERLAIALGVMS-SSTDTVRVMKNLRVCEDCHNATKFISKI 876

Query: 663 YNREIIVRDNSRFHHFKNGSCSCKDFW 689
            N+EI+VRD  RFHHF +GSCSC D+W
Sbjct: 877 VNKEIVVRDTHRFHHFVDGSCSCGDYW 903



 Score =  188 bits (478), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 143/517 (27%), Positives = 245/517 (47%), Gaps = 36/517 (6%)

Query: 36  ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIK 95
           + +++HA  V   L     + + LL LY+     +L     +F R L+      +  +I 
Sbjct: 47  QGRRIHARIVSLGL--EEELGNHLLRLYLK--CESLGDVEEVFSR-LEVRDEASWTTIIT 101

Query: 96  CYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF 155
            Y  + ++  A+ +F  +    +  D  T   V+K  ARLG + +G+ IH  + + G   
Sbjct: 102 AYTEHGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHAWIVESGLKG 161

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM- 214
              + + L+ +Y   G +     +F+ M ++DLVSWN  I    + G++ +A++LF  M 
Sbjct: 162 KSVLANLLLHIYGSCGCVASAMLLFEKM-ERDLVSWNAAIAANAQSGDLGIALELFQRMQ 220

Query: 215 -----PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMP----NRNLVSWNAMINGYMKAGD 265
                P R       LV   + C  +  A+ I + +      + LV   A+ + Y + G 
Sbjct: 221 LEGVRPAR-----ITLVIALTVCATIRQAQAIHFIVRESGLEQTLVVSTALASAYARLGH 275

Query: 266 VDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSA 325
           +  A E+FD    RD+++WN+M+  Y  +G   EA  L   ML   + P+  TLV+A + 
Sbjct: 276 LYQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGISPSKVTLVNAST- 334

Query: 326 VAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHW 385
             G + L  GR +H   ++ G   D VLG  L+ MY++CGS E A  +F+ I    V  W
Sbjct: 335 --GCSSLRFGRMIHGCALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFKRIPCNAVS-W 391

Query: 386 TAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACS----HAGLVNDGRRYFN 441
             MI G    G   +A++LF +M   GM P   T++ +L A +     A  + +GR+  +
Sbjct: 392 NTMIAGSSQKGQMKRAVELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHS 451

Query: 442 MMIN-DYGIEPTIEHYGCLVDILCRTGYLEEAKSTIE--SMPMRPNFVIWMSLLS--GAR 496
            +++  Y  EP I     +V +    G ++EA ++ +  +M  R + V W +++S     
Sbjct: 452 RIVSCGYASEPAIG--TAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQH 509

Query: 497 NHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAG 533
            HG + +G +   +L  VAP+ I C  VL     AA 
Sbjct: 510 GHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAA 546



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 99/375 (26%), Positives = 175/375 (46%), Gaps = 28/375 (7%)

Query: 138 IKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDG 197
           + +G++IH  +  LG   ++ + + L+ +Y K   +     VF  ++ +D  SW  +I  
Sbjct: 45  LSQGRRIHARIVSLGL--EEELGNHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITA 102

Query: 198 YVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNL--- 250
           Y + G+ + A+ +F  M       D  ++  ++   ++ G +   R I   +    L   
Sbjct: 103 YTEHGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHAWIVESGLKGK 162

Query: 251 -VSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLI 309
            V  N +++ Y   G V SA  LF+ ME RDL++WN+ IA    +G    ALEL + M +
Sbjct: 163 SVLANLLLHIYGSCGCVASAMLLFEKME-RDLVSWNAAIAANAQSGDLGIALELFQRMQL 221

Query: 310 GDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIES 369
             V P   TLV AL+  A    + + + +H  + ++G     V+ T L   Y++ G +  
Sbjct: 222 EGVRPARITLVIALTVCA---TIRQAQAIHFIVRESGLEQTLVVSTALASAYARLGHLYQ 278

Query: 370 ALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSH 429
           A  VF   +++ V  W AM+     HG  ++A  LF +M   G+ P+ +T +     CS 
Sbjct: 279 AKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGISPSKVTLVNASTGCSS 338

Query: 430 AGLVNDGRRYFNMMIN----DYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNF 485
                     F  MI+    + G++  I     L+D+  R G  EEA+   + +P   N 
Sbjct: 339 L--------RFGRMIHGCALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFKRIPC--NA 388

Query: 486 VIWMSLLSGARNHGN 500
           V W ++++G+   G 
Sbjct: 389 VSWNTMIAGSSQKGQ 403



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 67/121 (55%), Gaps = 2/121 (1%)

Query: 317 ATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRA 376
           A LV  L A     +L++GR +H+ IV  G   +  LG  L+++Y KC S+     VF  
Sbjct: 30  AHLVRLLRAAGDDRLLSQGRRIHARIVSLGLEEE--LGNHLLRLYLKCESLGDVEEVFSR 87

Query: 377 ISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDG 436
           +  +    WT +I     HG A +A+ +F++M + G++  A+TF+ VL AC+  G ++ G
Sbjct: 88  LEVRDEASWTTIITAYTEHGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQG 147

Query: 437 R 437
           R
Sbjct: 148 R 148


>gi|15221713|ref|NP_174428.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169458|sp|Q9C866.1|PPR65_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31430
 gi|12322531|gb|AAG51260.1|AC027135_1 PPR-repeat protein [Arabidopsis thaliana]
 gi|332193234|gb|AEE31355.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 570

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/554 (39%), Positives = 315/554 (56%), Gaps = 44/554 (7%)

Query: 81  ILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKE 140
           +LQ PSL++YN ++K     +   + L LF +L  + L PDNFTLP V+K   RL  + E
Sbjct: 5   LLQTPSLLMYNKMLKSLADGKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIE 64

Query: 141 GKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVK 200
           G+++HG   K G  FD +V +SL+ MYA  G+I++  +VFD M  +D+VSWN LI  YV 
Sbjct: 65  GEKVHGYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVG 124

Query: 201 KGEVEVAMKLFDEMPDRDLFSW-------------------------------------- 222
            G  E A+ +F  M       +                                      
Sbjct: 125 NGRFEDAIGVFKRMSQESNLKFDEGTIVSTLSACSALKNLEIGERIYRFVVTEFEMSVRI 184

Query: 223 -TCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDL 281
              LVD F KCG ++ AR +F  M ++N+  W +M+ GY+  G +D A  LF+   ++D+
Sbjct: 185 GNALVDMFCKCGCLDKARAVFDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKDV 244

Query: 282 ITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSY 341
           + W +M+ GY    RF EALEL   M    + P++  LVS L+  A    L +G+W+H Y
Sbjct: 245 VLWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIHGY 304

Query: 342 IVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQA 401
           I +N   VD V+GT L+ MY+KCG IE+AL VF  I ++    WT++I GL M+GM+ +A
Sbjct: 305 INENRVTVDKVVGTALVDMYAKCGCIETALEVFYEIKERDTASWTSLIYGLAMNGMSGRA 364

Query: 402 LDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVD 461
           LDL+ +M  +G++  AITF+ VL AC+H G V +GR+ F+ M   + ++P  EH  CL+D
Sbjct: 365 LDLYYEMENVGVRLDAITFVAVLTACNHGGFVAEGRKIFHSMTERHNVQPKSEHCSCLID 424

Query: 462 ILCRTGYLEEAKSTIESMPMRPN---FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDT 518
           +LCR G L+EA+  I+ M    +     ++ SLLS ARN+GN  I E  A  L KV    
Sbjct: 425 LLCRAGLLDEAEELIDKMRGESDETLVPVYCSLLSAARNYGNVKIAERVAEKLEKVEVSD 484

Query: 519 IGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDK--SHP 576
              + +L+++YA+A +W+ V+ VR  MK  G RK PG SSIE  GV HEF+VGD   SHP
Sbjct: 485 SSAHTLLASVYASANRWEDVTNVRRKMKDLGIRKFPGCSSIEIDGVGHEFIVGDDLLSHP 544

Query: 577 QTDEIHSKLSEMRN 590
           + DEI+S L +  N
Sbjct: 545 KMDEINSMLHQTTN 558



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/212 (33%), Positives = 108/212 (50%), Gaps = 10/212 (4%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           AR +F+R      +VL+  ++  YV   R  EAL LF  +    + PDNF L  ++ G A
Sbjct: 232 ARVLFERS-PVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTGCA 290

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
           + GA+++GK IHG + +     DK V ++LV MYAK G I+    VF  + ++D  SW  
Sbjct: 291 QTGALEQGKWIHGYINENRVTVDKVVGTALVDMYAKCGCIETALEVFYEIKERDTASWTS 350

Query: 194 LIDGYVKKGEVEVAMKLFDEMPD----RDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRN 249
           LI G    G    A+ L+ EM +     D  ++  ++   +  G V   R+IF+ M  R+
Sbjct: 351 LIYGLAMNGMSGRALDLYYEMENVGVRLDAITFVAVLTACNHGGFVAEGRKIFHSMTERH 410

Query: 250 LVS-----WNAMINGYMKAGDVDSACELFDDM 276
            V       + +I+   +AG +D A EL D M
Sbjct: 411 NVQPKSEHCSCLIDLLCRAGLLDEAEELIDKM 442



 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 145/347 (41%), Gaps = 79/347 (22%)

Query: 36  ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIK 95
           E +++H  +VK  L + S +S+ L+ +Y    +  +     +FD + Q   +V +N LI 
Sbjct: 64  EGEKVHGYAVKAGLEFDSYVSNSLMGMY--ASLGKIEITHKVFDEMPQR-DVVSWNGLIS 120

Query: 96  CYVFNQRSHEALTLFCDLLDRFLLP-DNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
            YV N R  +A+ +F  +     L  D  T+   +   + L  ++ G++I+  V    F 
Sbjct: 121 SYVGNGRFEDAIGVFKRMSQESNLKFDEGTIVSTLSACSALKNLEIGERIYRFVVT-EFE 179

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK---------------------------- 186
               + ++LV M+ K G +D  R VFD+M DK                            
Sbjct: 180 MSVRIGNALVDMFCKCGCLDKARAVFDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERS 239

Query: 187 ---DLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDR-------------------- 217
              D+V W  +++GYV+    + A++LF  M      PD                     
Sbjct: 240 PVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQGK 299

Query: 218 -------------DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAG 264
                        D    T LVD ++KCG +E A E+FY +  R+  SW ++I G    G
Sbjct: 300 WIHGYINENRVTVDKVVGTALVDMYAKCGCIETALEVFYEIKERDTASWTSLIYGLAMNG 359

Query: 265 DVDSACELFDDME---IR-DLITWNSMIAGYELNGRFMEALELLETM 307
               A +L+ +ME   +R D IT+ +++      G   E  ++  +M
Sbjct: 360 MSGRALDLYYEMENVGVRLDAITFVAVLTACNHGGFVAEGRKIFHSM 406


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 226/626 (36%), Positives = 337/626 (53%), Gaps = 75/626 (11%)

Query: 105 EALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLV 164
           +AL+L+  +L     P+ FT P  +K  A L     G Q HG + K+G  F+ FV + L+
Sbjct: 32  QALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQITKVGCVFEPFVQTGLI 91

Query: 165 SMYAKFGEIDLGRRVFDA--MDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP------- 215
           SMY K   +D  R+VF+      K  V +N L+ GYV   +   A+ LF +M        
Sbjct: 92  SMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSEAVLLFRQMNEEGVPVN 151

Query: 216 --------------------------------DRDLFSWTCLVDGFSKCGKVEIAREIFY 243
                                           D D+    C +  + KCG V  A+++F 
Sbjct: 152 SVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFD 211

Query: 244 RMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALEL 303
            MP + L+SWNAM++GY + G   +  EL+ +M               ++NG        
Sbjct: 212 EMPVKGLISWNAMVSGYAQNGLATNVLELYRNM---------------DMNG-------- 248

Query: 304 LETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSK 363
                   V P+  TLV  LS+ A L   + G  +   I  +GF  +  L   LI MY++
Sbjct: 249 --------VHPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYAR 300

Query: 364 CGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGV 423
           CG++  A  VF  + ++ +  WTA+I G GMHG    A+ LF +M R G++P    F+ V
Sbjct: 301 CGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCV 360

Query: 424 LNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRP 483
           L+ACSHAGL + G  YF MM  +Y +EP  EHY C+VD+L R G L+EA++ IESMP++P
Sbjct: 361 LSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKP 420

Query: 484 NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVRE 543
           +  +W +LL   + H N ++ E A   +I++ P+ IG YV+LSNIY+ A     V  +R 
Sbjct: 421 DGAVWGALLGACKIHKNVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRI 480

Query: 544 MMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQ 603
           MMK++  +KDPG S +E +G +H F+VGD++H Q+DEI+  L E+   +      P+   
Sbjct: 481 MMKEKKLKKDPGCSYVELKGRVHPFIVGDRNHLQSDEIYRVLEELEAIIMQEFGKPEKDN 540

Query: 604 VLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIY 663
                E  K+    +  HSE+LA+AFGL+N  + + + I+KNLR+C DCH   K++S I 
Sbjct: 541 RE---ESNKDGFTRVGVHSEKLAVAFGLLNTTTGAEVVIIKNLRICEDCHLFFKMVSKIV 597

Query: 664 NREIIVRDNSRFHHFKNGSCSCKDFW 689
           +R++ VRD +RFHHF+NGSCSCKD+W
Sbjct: 598 HRQLTVRDATRFHHFRNGSCSCKDYW 623



 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 93/373 (24%), Positives = 173/373 (46%), Gaps = 23/373 (6%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSL-VLYNLLIKCY 97
           Q H    K   ++   + + L+S+Y    +  +  AR +F+       L V YN L+  Y
Sbjct: 70  QFHGQITKVGCVFEPFVQTGLISMYCKGSL--VDNARKVFEENFHSRKLTVCYNALVSGY 127

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
           V N +  EA+ LF  + +  +  ++ TL  +I        ++ G  +H    K GF  D 
Sbjct: 128 VSNSKCSEAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDV 187

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM--- 214
            V++  ++MY K G ++  +++FD M  K L+SWN ++ GY + G     ++L+  M   
Sbjct: 188 SVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMN 247

Query: 215 ---PDRDLFSWTCLVDGFSKC---GKVEIAREIFYRMPNRNLVS----WNAMINGYMKAG 264
              PD        LV   S C   G   +  E+ +++      S     NA+IN Y + G
Sbjct: 248 GVHPDP-----VTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYARCG 302

Query: 265 DVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS 324
           ++  A  +FD M  R L++W ++I GY ++G    A++L + M+   + P+    V  LS
Sbjct: 303 NLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLS 362

Query: 325 AVAGLAVLNKGRWMHSYIVKNGFVVDGVLG-TLLIQMYSKCGSIESALTVFRAISKKKVG 383
           A +   + ++G      + +N  +  G    + ++ +  + G ++ A T+  ++  K  G
Sbjct: 363 ACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDG 422

Query: 384 H-WTAMIVGLGMH 395
             W A++    +H
Sbjct: 423 AVWGALLGACKIH 435



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 125/275 (45%), Gaps = 7/275 (2%)

Query: 284 WNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIV 343
           WN+ +       +F++AL L   ML     PN  T   AL + A L++   G   H  I 
Sbjct: 17  WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 76

Query: 344 KNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAI--SKKKVGHWTAMIVGLGMHGMATQA 401
           K G V +  + T LI MY K   +++A  VF     S+K    + A++ G   +   ++A
Sbjct: 77  KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSEA 136

Query: 402 LDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVD 461
           + LF +M   G+   ++T +G++ AC     +  G       +  YG +  +    C + 
Sbjct: 137 VLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTL-KYGFDSDVSVVNCFIT 195

Query: 462 ILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG-ARNHGNKDIGEYAAN-NLIKVAPDTI 519
           +  + G +  A+   + MP++   + W +++SG A+N    ++ E   N ++  V PD +
Sbjct: 196 MYMKCGSVNYAQKLFDEMPVK-GLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPV 254

Query: 520 GCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDP 554
               VLS+  A  G      EV   ++  GF  +P
Sbjct: 255 TLVGVLSSC-ANLGAQSVGHEVEFKIQASGFTSNP 288


>gi|356513796|ref|XP_003525595.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 595

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 225/571 (39%), Positives = 339/571 (59%), Gaps = 14/571 (2%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRI------LQHPSLVLYN 91
           + LH L+   + +  SG+S     L+    I  L      F R       L HP     N
Sbjct: 18  KNLHELNQVLSQLIVSGLSQH--PLFATSAIKKLCSHSVTFPRATFLFDHLHHPDAFHCN 75

Query: 92  LLIKCYVFNQRSHEALTLF-CDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFK 150
            +I+ Y        AL  + C +L R + P+++T P +IK    +G+ +EG + H  + K
Sbjct: 76  TIIRAYARKPDFPAALRFYYCKMLARSVPPNHYTFPLLIKVCTDIGSFREGLKGHARIVK 135

Query: 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
            GFG D F  +SL+ MY+ FG I   R VFD     DLVS+N +IDGYVK GE+  A K+
Sbjct: 136 FGFGSDLFARNSLIRMYSVFGRIGNARMVFDESCWLDLVSYNSMIDGYVKNGEIGAARKV 195

Query: 211 FDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSAC 270
           F+EMPDRD+ SW CL+ G+   G ++ A E+F  +P R+ VSWN MI+G  + G+V  A 
Sbjct: 196 FNEMPDRDVLSWNCLIAGYVGVGDLDAANELFETIPERDAVSWNCMIDGCARVGNVSLAV 255

Query: 271 ELFDDME--IRDLITWNSMIAGYELNGRFMEALELLETMLIG-DVLPNDATLVSALSAVA 327
           + FD M   +R++++WNS++A +     + E L L   M+ G + +PN+ATLVS L+A A
Sbjct: 256 KFFDRMPAAVRNVVSWNSVLALHARVKNYGECLMLFGKMVEGREAVPNEATLVSVLTACA 315

Query: 328 GLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTA 387
            L  L+ G W+HS+I  N    D +L T L+ MY+KCG+++ A  VF  +  + V  W +
Sbjct: 316 NLGKLSMGMWVHSFIRSNNIKPDVLLLTCLLTMYAKCGAMDLAKGVFDEMPVRSVVSWNS 375

Query: 388 MIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDY 447
           MI+G G+HG+  +AL+LF +M + G +P   TFI VL+AC+HAG+V +G  YF++M   Y
Sbjct: 376 MIMGYGLHGIGDKALELFLEMEKAGQQPNDATFISVLSACTHAGMVMEGWWYFDLMQRVY 435

Query: 448 GIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYA 507
            IEP +EHYGC+VD+L R G +E ++  I  +P++    IW +LLSG  NH + ++GE  
Sbjct: 436 KIEPKVEHYGCMVDLLARAGLVENSEELIRMVPVKAGSAIWGALLSGCSNHLDSELGEIV 495

Query: 508 ANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHE 567
           A   I++ P  IG Y++LSN+YAA G+WD V  VR M+K++G +K+  +SS+ H      
Sbjct: 496 AKRFIELEPQDIGPYILLSNMYAAKGRWDDVEHVRLMIKEKGLQKE-AASSLVHLEDFES 554

Query: 568 FVVGDKSHPQTDEIHSKLSEMRNKLK-AAGH 597
             V + S  +   ++S LSE+  ++K + GH
Sbjct: 555 KYVKNNSGYRKKIMYSMLSELGTQMKLSVGH 585


>gi|357127388|ref|XP_003565363.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Brachypodium distachyon]
          Length = 814

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 233/662 (35%), Positives = 370/662 (55%), Gaps = 20/662 (3%)

Query: 40  LHALSVKTNLIYHSGI--SSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           LH  ++K  L+ HS +   + LL  Y    +  L  AR +F  +    S+    +++ C 
Sbjct: 161 LHPFALKLGLL-HSNVVVCNTLLDAYCKHGL--LAAARRVFQEMPHRDSVTYNAMMMGCS 217

Query: 98  VFNQRSH-EALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFD 156
              + SH EAL LF  +  + L    FT   V+  A  +G +  G+Q+HGLV +     +
Sbjct: 218 --KEGSHAEALDLFAAMRRKGLAATRFTFSTVLTVATGVGDLCLGRQVHGLVAR-ATSSN 274

Query: 157 KFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP- 215
            FV +SL+  Y+K   +D  +++F  M ++D VS+N +I GY       + ++LF EM  
Sbjct: 275 VFVNNSLLDFYSKCDCLDEMKKLFHEMIERDNVSYNVMIAGYAWNRCASIVLRLFREMQS 334

Query: 216 ---DRDLFSWTCLVDGFSKCGKVEIAREIFYRM-----PNRNLVSWNAMINGYMKAGDVD 267
              DR    +  L+        + I ++I  ++      + +LV  NA+I+ Y K G +D
Sbjct: 335 LSFDRQALPYASLLSVAGSVPHIGIGKQIHAQLVLLGLSSEDLVG-NALIDMYSKCGMLD 393

Query: 268 SACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVA 327
           +A   F +   +  ++W +MI G   NG+  EAL+L   M    + P+ AT  S + A +
Sbjct: 394 AAKTNFINKNDKTGVSWTAMITGCVQNGQQEEALQLFCGMRRAGLSPDRATFSSTIKASS 453

Query: 328 GLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTA 387
            LA++  GR +HSY++++G +     G+ L+ MY+KCG ++ AL  F  + ++    W A
Sbjct: 454 NLAMIGLGRQLHSYLIRSGHMSSVFSGSALLDMYTKCGCLDEALQTFDEMPERNSISWNA 513

Query: 388 MIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDY 447
           +I     +G A  A+ +F  M   G KP ++TF+ VL+ACSH GL  +  +YF +M  +Y
Sbjct: 514 VISAYAHYGQAKNAIKMFEGMLCYGFKPDSVTFLSVLSACSHNGLAEECMKYFELMEYEY 573

Query: 448 GIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYA 507
           GI P  EHY C++D L R G  ++ +  +  MP   + +IW S+L   R HGN+D+   A
Sbjct: 574 GISPWKEHYSCVIDTLGRVGRFDKVQEMLGEMPFEDDPIIWSSILHSCRTHGNQDLARVA 633

Query: 508 ANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHE 567
           A  L  +       YV+LSNI+A AG+W+  + V+++M+ RG RK+ G S +E +  ++ 
Sbjct: 634 AEKLFSMGSTDATPYVILSNIFAKAGKWEDAAGVKKIMRDRGLRKETGYSWVEVKHKVYS 693

Query: 568 FVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAI 627
           F   D+++P   EI  +L  +  ++   G+ PDT+  L  ++D  + E+ L+ HSERLAI
Sbjct: 694 FSSNDQTNPMITEIKDELERLYKEMDKQGYKPDTSCTLQQVDDDIKLES-LKYHSERLAI 752

Query: 628 AFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKD 687
           AF LIN    +PIR++KNL  C DCHS  K++S I NR+IIVRD+SRFHHFK+G CSC D
Sbjct: 753 AFALINTPPGTPIRVMKNLSACVDCHSAIKMMSKIVNRDIIVRDSSRFHHFKDGFCSCGD 812

Query: 688 FW 689
           +W
Sbjct: 813 YW 814



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 147/527 (27%), Positives = 240/527 (45%), Gaps = 53/527 (10%)

Query: 44  SVKTNLIYHSGISSRLLS----LYVD-PHINNLH--------YARSIFDRILQH------ 84
           + + NL+ HS ISS  L+    L+   PH NN          Y+RS       H      
Sbjct: 34  TYRLNLLLHSLISSGRLAQARALFDQMPHRNNAFSLNRMLSGYSRSGQLSAAHHLFLSSP 93

Query: 85  PSL---VLYNLLIKCYVF--NQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIK 139
           P L   V + ++I  +      R+ +A++LF D+L   + PD  T+  V+      G   
Sbjct: 94  PHLRDAVTWTVMIGAFASAPGARASDAVSLFRDMLREGVAPDRVTVATVLNLPPASGGTA 153

Query: 140 EG---KQIHGLVFKLGFGFDKFVL-SSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLI 195
                  +H    KLG      V+ ++L+  Y K G +   RRVF  M  +D V++N ++
Sbjct: 154 AAIIIASLHPFALKLGLLHSNVVVCNTLLDAYCKHGLLAAARRVFQEMPHRDSVTYNAMM 213

Query: 196 DGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREI---FYRMPNR 248
            G  K+G    A+ LF  M  + L    F+++ ++   +  G + + R++     R  + 
Sbjct: 214 MGCSKEGSHAEALDLFAAMRRKGLAATRFTFSTVLTVATGVGDLCLGRQVHGLVARATSS 273

Query: 249 NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETML 308
           N+   N++++ Y K   +D   +LF +M  RD +++N MIAGY  N      L L   M 
Sbjct: 274 NVFVNNSLLDFYSKCDCLDEMKKLFHEMIERDNVSYNVMIAGYAWNRCASIVLRLFREMQ 333

Query: 309 IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIE 368
                       S LS    +  +  G+ +H+ +V  G   + ++G  LI MYSKCG ++
Sbjct: 334 SLSFDRQALPYASLLSVAGSVPHIGIGKQIHAQLVLLGLSSEDLVGNALIDMYSKCGMLD 393

Query: 369 SALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACS 428
           +A T F   + K    WTAMI G   +G   +AL LF  M R G+ P   TF   + A S
Sbjct: 394 AAKTNFINKNDKTGVSWTAMITGCVQNGQQEEALQLFCGMRRAGLSPDRATFSSTIKASS 453

Query: 429 HAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIW 488
           +  ++  GR+  + +I   G   ++     L+D+  + G L+EA  T + MP R N + W
Sbjct: 454 NLAMIGLGRQLHSYLIRS-GHMSSVFSGSALLDMYTKCGCLDEALQTFDEMPER-NSISW 511

Query: 489 MSLLSGARNHGNKDIGEYAANNLIKV---------APDTIGCYVVLS 526
            +++S   ++G        A N IK+          PD++    VLS
Sbjct: 512 NAVISAYAHYGQ-------AKNAIKMFEGMLCYGFKPDSVTFLSVLS 551


>gi|225428647|ref|XP_002281535.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|297741370|emb|CBI32501.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 229/678 (33%), Positives = 387/678 (57%), Gaps = 13/678 (1%)

Query: 21  SRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDR 80
           ++ H +IL+     K  QQ+HA  + + L +++ +S+ L++ YV  +   L  A+ IF  
Sbjct: 24  AQPHASILRKLKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYV--YCGLLADAKQIFHH 81

Query: 81  ILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKE 140
              + ++V + +LI     N    EA+ +F +++     P+  T+  V+   A LG I+ 
Sbjct: 82  T-PYKNVVSWTILISGLAKNDCFVEAIDVFREMIMGNFKPNAVTISSVLPAFANLGLIRI 140

Query: 141 GKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVK 200
            K +H    + GF  + FV ++LV MY+KFG + + R++F++M ++++V+WN ++ GY  
Sbjct: 141 AKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVTWNAIVSGYSD 200

Query: 201 KGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREI---FYRMPNRNLVSW 253
            G  E A+ LF+ M  +    D ++   L+      G +++   I     R    N    
Sbjct: 201 HGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHI 260

Query: 254 -NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETML-IGD 311
             A+++ Y+    VD A  +F +M ++D+  W  M+ G+     +  A++    ML I +
Sbjct: 261 KTALMDIYVSHNCVDDAHRVFSEMSVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQN 320

Query: 312 VLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESAL 371
           +  +   L+  LS+ +    L +GR +H+  +K  F  +  +G+ +I MY+ CG++E A 
Sbjct: 321 LKLDSIALMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAK 380

Query: 372 TVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAG 431
             F  + +K V  W AMI G GM+G  T A+DLF +M   G+ P   TF+ VL ACSHAG
Sbjct: 381 RFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAG 440

Query: 432 LVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSL 491
           +V +G + F  M+    + P ++HY C++DIL R G L+ A S I +MP +P+F ++ +L
Sbjct: 441 MVYEGLQIFYHMVKTSHVIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTL 500

Query: 492 LSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFR 551
           L   R HGN  +G   +  + ++ P+  G YV+LSN+YA AG W+ V   R  ++ +  +
Sbjct: 501 LGACRIHGNIKLGHEISQKIFEMEPNDAGYYVLLSNMYALAGNWEGVKMTRASLRSKRMK 560

Query: 552 KDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQ 611
           KDPG SSIE    ++ F+ G+K HPQ  +I   L  +  K+K AG+VP+T  +L  + D 
Sbjct: 561 KDPGFSSIEINQEIYTFMAGEKDHPQYFKIEGILKGLILKIKKAGYVPNTNVLLQDVSDD 620

Query: 612 KEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRD 671
            +K+  L +HSE++AIAFGL+  K  + IRI KNLR C+DCH+ +K +S ++ R ++++D
Sbjct: 621 MKKDI-LYHHSEKMAIAFGLMRTKPETIIRITKNLRTCDDCHTASKFVSKVFGRVLVIKD 679

Query: 672 NSRFHHFKNGSCSCKDFW 689
            +RFH F++G CSC+D+W
Sbjct: 680 ANRFHVFQDGVCSCRDYW 697


>gi|224115126|ref|XP_002332220.1| predicted protein [Populus trichocarpa]
 gi|222831877|gb|EEE70354.1| predicted protein [Populus trichocarpa]
          Length = 673

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 233/673 (34%), Positives = 373/673 (55%), Gaps = 31/673 (4%)

Query: 40  LHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVF 99
           +HA  +KT       + S L+++Y    +  +  AR +FD  L   ++V++  L+  YV 
Sbjct: 2   VHAHVIKTGTHEEFFVMSFLVNVYAKCGV--MVNARKVFDN-LPRRNVVVWTTLMTGYVQ 58

Query: 100 NQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFV 159
           N +   A+ +F D+L+    P NFTL   +   + L +I  GKQ H  + K     D  +
Sbjct: 59  NSQPEVAVEVFGDMLESGSFPSNFTLSIALNACSSLESITLGKQFHAFIIKYRISHDSSI 118

Query: 160 LSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL 219
            ++L S+Y+KFG +D   + F    +KD++SW  +I      G   + ++LF EM   ++
Sbjct: 119 GNALCSLYSKFGSLDSSVKAFRETGEKDVISWTTIISACGDNGRAGMGLRLFIEMLFENV 178

Query: 220 ----FSWTCLVDGFSKCGKVEIAREIFYRMPNR-----NLVSWNAMINGYMKAGDVDSAC 270
               F+ T ++   S     ++  ++ + +  +     NL   N+++  Y+K G +D A 
Sbjct: 179 EPNDFTLTSVLSLCSTIQSSDLGMQV-HSLSTKLGHESNLRITNSLVYLYLKCGCIDEAK 237

Query: 271 ELFDDMEIRDLITWNSMIAG-----------YELNGRFMEALELLETMLIGDVLPNDATL 319
            LF+ ME ++LITWN+MIAG           +       EAL +   +      P+  TL
Sbjct: 238 NLFNRMEYKNLITWNAMIAGHAQAMDLAKDNFSAQQTGTEALGMYLKLNRSGRKPDLFTL 297

Query: 320 VSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK 379
            S L+  + LA L +G  +H+  +K+GF+ D V+GT L+ MY KCGSIE A   F  +S 
Sbjct: 298 SSILTVCSRLAALEQGEQIHAQTIKSGFLSDVVVGTALVDMYDKCGSIERARKAFLDMST 357

Query: 380 KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRY 439
           + +  WT+MI     HG +  AL LF  M   G +P  ITF+GVL ACSHAG+V++   Y
Sbjct: 358 RTLISWTSMITSFARHGQSQHALQLFEDMRLAGFRPNQITFVGVLAACSHAGMVDEALEY 417

Query: 440 FNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
           F +M  +Y I+P ++HYGCLVD+  R G L+EA   I+ M + PN  IW+ L++G RNHG
Sbjct: 418 FEIMQKEYKIKPVMDHYGCLVDMFVRLGRLDEAFDVIKRMDVEPNEFIWLLLIAGCRNHG 477

Query: 500 NKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSI 559
           N+++G YAA  L+K+ P +   YVVL N+Y +A +W+ VS VR +MK+    K    S I
Sbjct: 478 NEELGFYAAEQLLKLKPRSTETYVVLLNMYISAERWEDVSMVRRLMKEEKVGKLKDWSRI 537

Query: 560 EHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKE---- 615
             +G +H F   ++ H    E+H+ L+++ ++ K+ G+  +  + +  I+D++E+     
Sbjct: 538 SIKGEVHSFKTNNRLHNHNAELHTLLNDLVDRAKSLGY--EQLENMEVIDDEEEEAEEKA 595

Query: 616 -AELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSR 674
            +    HSE+LA+ FGL+N    +PIR++K++ +C DCH   K++S    R II++D  R
Sbjct: 596 FSSAVYHSEKLAVTFGLLNTPIGAPIRVIKSVTMCKDCHDFMKVVSSQTTRHIIIKDGKR 655

Query: 675 FHHFKNGSCSCKD 687
            H F NG CSC D
Sbjct: 656 LHKFVNGQCSCAD 668



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 102/411 (24%), Positives = 192/411 (46%), Gaps = 29/411 (7%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +Q HA  +K  + + S I + L SLY      +L  +   F R      ++ +  +I   
Sbjct: 101 KQFHAFIIKYRISHDSSIGNALCSLY--SKFGSLDSSVKAF-RETGEKDVISWTTIISAC 157

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
             N R+   L LF ++L   + P++FTL  V+   + + +   G Q+H L  KLG   + 
Sbjct: 158 GDNGRAGMGLRLFIEMLFENVEPNDFTLTSVLSLCSTIQSSDLGMQVHSLSTKLGHESNL 217

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVE------------ 205
            + +SLV +Y K G ID  + +F+ M+ K+L++WN +I G+ +  ++             
Sbjct: 218 RITNSLVYLYLKCGCIDEAKNLFNRMEYKNLITWNAMIAGHAQAMDLAKDNFSAQQTGTE 277

Query: 206 ---VAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS----WNAMIN 258
              + +KL       DLF+ + ++   S+   +E   +I  +      +S      A+++
Sbjct: 278 ALGMYLKLNRSGRKPDLFTLSSILTVCSRLAALEQGEQIHAQTIKSGFLSDVVVGTALVD 337

Query: 259 GYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDAT 318
            Y K G ++ A + F DM  R LI+W SMI  +  +G+   AL+L E M +    PN  T
Sbjct: 338 MYDKCGSIERARKAFLDMSTRTLISWTSMITSFARHGQSQHALQLFEDMRLAGFRPNQIT 397

Query: 319 LVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLG--TLLIQMYSKCGSIESALTVFRA 376
            V  L+A +   ++++    +  I++  + +  V+     L+ M+ + G ++ A  V + 
Sbjct: 398 FVGVLAACSHAGMVDEA-LEYFEIMQKEYKIKPVMDHYGCLVDMFVRLGRLDEAFDVIKR 456

Query: 377 ISKKKVGH-WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI-TFIGVLN 425
           +  +     W  +I G   HG   + L  +     + +KP +  T++ +LN
Sbjct: 457 MDVEPNEFIWLLLIAGCRNHG--NEELGFYAAEQLLKLKPRSTETYVVLLN 505


>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Brachypodium distachyon]
          Length = 646

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 224/589 (38%), Positives = 339/589 (57%), Gaps = 25/589 (4%)

Query: 124 TLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFG-------EIDLG 176
           +LP  +K  A LG    G  +H L  + G   D+F  ++L+++Y K         E+D  
Sbjct: 60  SLPGALKSCAALGLRALGASLHALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGS 119

Query: 177 -------RRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM----PDRDLFSWTCL 225
                  R+VFD M +KD+VSWN L+ G  + G    A+ L  EM       D F+ + +
Sbjct: 120 AVVLESVRKVFDEMPEKDVVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSV 179

Query: 226 VDGFSKCGKVEIAREIFYRMPNRN-----LVSWNAMINGYMKAGDVDSACELFDDMEIRD 280
           +  F++   V    E+ +    RN     +   +++I+ Y      D + ++FD++ +RD
Sbjct: 180 LPIFAEGADVRRGMEL-HGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRD 238

Query: 281 LITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHS 340
            I WNSM+AG   NG   EAL L   ML   + P   T  S + A   LA L  G+ +H+
Sbjct: 239 AILWNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHA 298

Query: 341 YIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQ 400
           Y+++ GF  +  + + LI MY KCG++  A  +F  I    +  WTAMI+G  +HG A +
Sbjct: 299 YVIRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPARE 358

Query: 401 ALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLV 460
           AL LF++M    +KP  ITF+ VL ACSHAGLV+ G +YFN M + YGI P++EH+  L 
Sbjct: 359 ALVLFDRMELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAALA 418

Query: 461 DILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIG 520
           D L R G LEEA + I  M ++P   +W +LL   + H N  + E  A  +  + P ++G
Sbjct: 419 DTLGRPGKLEEAYNFISGMKIKPTASVWSTLLRACKVHKNTVLAEEVAKKIFDLEPRSMG 478

Query: 521 CYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDE 580
            +++LSN Y+++G+W++ + +R+ M+K+G +K+P  S IE +   H FV  DKSHP  + 
Sbjct: 479 SHIILSNTYSSSGRWNEAAHLRKSMRKKGMQKEPACSWIEVKNKQHVFVAHDKSHPWYER 538

Query: 581 IHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPI 640
           I   L+    ++   G+VP+T  V   IE++ +K + L  HSE+LAI FG+I+    + I
Sbjct: 539 IIDALNVFSEQMVRQGYVPNTDDVFQDIEEE-QKNSVLCGHSEKLAIVFGIISTPPGTTI 597

Query: 641 RIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           R++KNLRVC DCH+VTK +S I  REI++RD +RFHHFK+G CSC DFW
Sbjct: 598 RVMKNLRVCVDCHTVTKFISKIVGREIVMRDANRFHHFKDGICSCGDFW 646



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 111/452 (24%), Positives = 187/452 (41%), Gaps = 88/452 (19%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYV--------DPHINN----LHYARSIFDRILQHPS 86
            LHAL++++        ++ LL+LY          P ++     L   R +FD + +   
Sbjct: 79  SLHALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGSAVVLESVRKVFDEMPEK-D 137

Query: 87  LVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHG 146
           +V +N L+     + R  EAL L  ++      PD+FTL  V+   A    ++ G ++HG
Sbjct: 138 VVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRGMELHG 197

Query: 147 LVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEV 206
              + GF  D FV SSL+ MYA     D   +VFD +  +D + WN ++ G  + G V+ 
Sbjct: 198 FATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILWNSMLAGCAQNGSVDE 257

Query: 207 AMKLF--------DEMP-------------------------------DRDLFSWTCLVD 227
           A+ LF          MP                               D ++F  + L+D
Sbjct: 258 ALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVIRGGFDGNVFISSSLID 317

Query: 228 GFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSM 287
            + KCG V IAR IF R+ + ++VSW AMI G+   G    A  LFD ME          
Sbjct: 318 MYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREALVLFDRME---------- 367

Query: 288 IAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKG-RWMHSYIVKNG 346
                                +G++ PN  T ++ L+A +   +++KG ++ +S     G
Sbjct: 368 ---------------------LGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYG 406

Query: 347 FVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGH-WTAMIVGLGMHGMATQALDLF 405
            V        L     + G +E A      +  K     W+ ++    +H     A ++ 
Sbjct: 407 IVPSLEHHAALADTLGRPGKLEEAYNFISGMKIKPTASVWSTLLRACKVHKNTVLAEEVA 466

Query: 406 NKMCRMGMKPTAI-TFIGVLNACSHAGLVNDG 436
            K+    ++P ++ + I + N  S +G  N+ 
Sbjct: 467 KKI--FDLEPRSMGSHIILSNTYSSSGRWNEA 496


>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 663

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 219/558 (39%), Positives = 330/558 (59%), Gaps = 12/558 (2%)

Query: 142 KQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKK 201
           +Q+H  +   G    + +L+ L+S+    G I   RR+F  + + D   ++ L+    K 
Sbjct: 108 QQVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKF 167

Query: 202 G-EVEVAM----KLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMP----NRNLVS 252
           G  ++  +     LF   P  + +++T ++   +    + + +EI   +       ++  
Sbjct: 168 GFSIDTVLFYRRMLFSGAPQSN-YTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYV 226

Query: 253 WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDV 312
             A+I  Y KA D+  A ++FD M  R +I WNS+I+GY+ NG   E++ L   M+    
Sbjct: 227 QAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGF 286

Query: 313 LPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALT 372
            P+ AT+VS LS+ + L  L+ G W+H Y   NGF ++ VLGT LI MY++CG++  A  
Sbjct: 287 QPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKARE 346

Query: 373 VFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGL 432
           VF ++ ++ V  WTAMI G GMHG   QA++LF +M   G +P  ITF+ VL+AC+H+GL
Sbjct: 347 VFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGL 406

Query: 433 VNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIES-MPMRPNFVIWMSL 491
           ++DGRR F+ M   YG+ P +EH  C+VD+  R G L +A   I+  +P  P   +W S+
Sbjct: 407 IDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSM 466

Query: 492 LSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFR 551
           L   R H N D+G   A +++ V P+  G YV+LSNIYA AG+ D+V  VR MM +R  +
Sbjct: 467 LGACRMHRNFDLGVKVAEHVLSVEPENPGHYVMLSNIYALAGRMDRVEMVRNMMTRRRLK 526

Query: 552 KDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQ 611
           K  G S+IE     + F +GDKSHPQT+ I+  L E+  +   +G+VP    ++  +E++
Sbjct: 527 KQVGYSTIEINRKTYLFSMGDKSHPQTNTIYRYLDELMCRCSESGYVPAPESLMHDLEEE 586

Query: 612 KEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRD 671
            E++  L  HSE+LA+AFGL+       IRIVKNLR+C DCHS  K +S I +REIIVRD
Sbjct: 587 -ERDYALRYHSEKLALAFGLLKTNQGETIRIVKNLRICEDCHSAIKHISIIADREIIVRD 645

Query: 672 NSRFHHFKNGSCSCKDFW 689
             RFHHFK+GSCSC D+W
Sbjct: 646 KFRFHHFKDGSCSCLDYW 663



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 116/440 (26%), Positives = 197/440 (44%), Gaps = 81/440 (18%)

Query: 1   MQTQTLQHSSPIHA---LQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISS 57
           +QTQ L    P+      Q H P  +H  +L+     +  QQ+HA  + + L     + +
Sbjct: 70  LQTQQLAFQHPVTRNFDTQSHSP--VHEALLRSGPRLRNLQQVHAHIIVSGLHRSRSLLT 127

Query: 58  RLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRF 117
           +L+SL       ++ YAR +F  +  +P   L++ L+K       S + +  +  +L   
Sbjct: 128 KLISLVCTA--GSITYARRLFPTV-PNPDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSG 184

Query: 118 LLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGR 177
               N+T   VIK  A L A++ GK+IH  V   G+G D +V ++L+++YAK  ++ + +
Sbjct: 185 APQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAK 244

Query: 178 RVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDR-------------- 217
           +VFDAM  + +++WN LI GY + G  + ++ LF  M      PD               
Sbjct: 245 KVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLG 304

Query: 218 --DLFSW-----------------TCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMIN 258
             D   W                 T L++ +++CG V  ARE+F  M  RN+V+W AMI+
Sbjct: 305 ALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMIS 364

Query: 259 GYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDAT 318
           GY                                ++G   +A+EL   M      PN+ T
Sbjct: 365 GY-------------------------------GMHGYGRQAMELFTEMRAYGPRPNNIT 393

Query: 319 LVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTL-LIQMYSKCGSIESALTVFRAI 377
            V+ LSA A   +++ GR + S + +   +V GV   + ++ M+ + G +  A    +  
Sbjct: 394 FVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKF 453

Query: 378 SKKKVGH--WTAMIVGLGMH 395
             K+ G   WT+M+    MH
Sbjct: 454 IPKEPGPAVWTSMLGACRMH 473


>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 214/571 (37%), Positives = 336/571 (58%), Gaps = 11/571 (1%)

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD 187
           ++K  A+   + +GK  H  +  +G   D    + L++MY+K G +D  R+VFD M  + 
Sbjct: 70  ILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRS 129

Query: 188 LVSWNCLIDGYVKKGEVEVAMKLFDEM-----PDRDLFSWTCLVDGFSKCGKVEI----A 238
           LVSWN +I    + GE   A+ L  +M     P  +    + L    +KC   E     A
Sbjct: 130 LVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHA 189

Query: 239 REIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFM 298
             I   M + N+    A+++ Y K G +  A  +F+ M  R ++TW+SM AGY  N  + 
Sbjct: 190 FAIKAAM-DLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYE 248

Query: 299 EALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLI 358
           +AL L        +  +   + S + A AGLA + +G+ +++ + K+GF  +  + + LI
Sbjct: 249 QALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQVNALLSKSGFCSNIFVASSLI 308

Query: 359 QMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI 418
            MY+KCG IE +  VFR + K+ V  W AMI GL  H  + + + LF KM +MG+ P  +
Sbjct: 309 DMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDV 368

Query: 419 TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIES 478
           TF+ VL+AC H GLV  G++YF++M  ++ + P + HY C+VD L R G + EA   I  
Sbjct: 369 TFVSVLSACGHMGLVKKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISK 428

Query: 479 MPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKV 538
           +P   +  +W SLL+  R HGN ++ E AA  L  + P   G Y++LSN+YAA G+WD+V
Sbjct: 429 LPFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAANGKWDEV 488

Query: 539 SEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHV 598
           +++R+++K+   +K+ G S IE +  +H F+VG+++HP+  EI+SKL+E+ ++L+  G+ 
Sbjct: 489 AKMRKLLKESDVKKERGKSWIEIKDKVHLFMVGERNHPKIVEIYSKLNEVMDELQKLGYK 548

Query: 599 PDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKL 658
            +T   L  + +  ++E  L +HSE+LA   GL+ +   +PIRI+KNLR+C DCHS  KL
Sbjct: 549 VETQHDLHQVGESIKQEL-LRHHSEKLAFTMGLLFLPPNAPIRIMKNLRICGDCHSFMKL 607

Query: 659 LSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            S  + R++IVRD +RFHHFKNG CSC DFW
Sbjct: 608 ASKFFCRDVIVRDTNRFHHFKNGCCSCGDFW 638



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 91/399 (22%), Positives = 164/399 (41%), Gaps = 79/399 (19%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYV 98
           Q+  + +KT+L+     S+ L+++Y      ++ +AR +FD  +   SLV +N +I    
Sbjct: 89  QILLMGLKTDLL----TSNILINMY--SKCGSVDFARQVFDE-MPSRSLVSWNTMIGSLT 141

Query: 99  FNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKF 158
            N   +EAL L   +         FT+  V+   A   A+ E + +H    K     + F
Sbjct: 142 QNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLNVF 201

Query: 159 VLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD-- 216
           V ++L+ +YAK G +     VF++M D+ +V+W+ +  GYV+    E A+ LF +  +  
Sbjct: 202 VATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETG 261

Query: 217 -------------------------------------RDLFSWTCLVDGFSKCGKVEIAR 239
                                                 ++F  + L+D ++KCG +E + 
Sbjct: 262 LKHDQFLMSSVICACAGLAAMIEGKQVNALLSKSGFCSNIFVASSLIDMYAKCGGIEESY 321

Query: 240 EIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFME 299
           ++F  +  RN+V WNAMI+G  +                               + R +E
Sbjct: 322 KVFRDVEKRNVVLWNAMISGLSR-------------------------------HARSLE 350

Query: 300 ALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLG-TLLI 358
            + L E M    + PND T VS LSA   + ++ KG+     + K   +   V   + ++
Sbjct: 351 VMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVKKGQKYFDLMTKEHHLAPNVFHYSCMV 410

Query: 359 QMYSKCGSIESALTVFRAIS-KKKVGHWTAMIVGLGMHG 396
              S+ G I  A  +   +        W +++     HG
Sbjct: 411 DTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRTHG 449



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 148/308 (48%), Gaps = 22/308 (7%)

Query: 36  ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIK 95
           E Q LHA ++K  +  +  +++ LL +Y    +  +  A  +F+  +   S+V ++ +  
Sbjct: 183 ECQLLHAFAIKAAMDLNVFVATALLDVYAKCGL--MKDAVCVFES-MPDRSVVTWSSMAA 239

Query: 96  CYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF 155
            YV N+   +AL LF    +  L  D F +  VI   A L A+ EGKQ++ L+ K GF  
Sbjct: 240 GYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQVNALLSKSGFCS 299

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP 215
           + FV SSL+ MYAK G I+   +VF  ++ +++V WN +I G  +       M LF++M 
Sbjct: 300 NIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQ 359

Query: 216 DRDLF-SWTCLVDGFSKCGK---VEIAREIFYRMPNR-----NLVSWNAMINGYMKAGDV 266
              L  +    V   S CG    V+  ++ F  M        N+  ++ M++   +AG +
Sbjct: 360 QMGLSPNDVTFVSVLSACGHMGLVKKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQI 419

Query: 267 DSACELFDDMEIRDLIT-WNSMIAGYELNGRFMEALELLETML--IGDVLPNDA---TLV 320
             A +L   +      + W S++A    +G     LEL E     + D+ P+++    L+
Sbjct: 420 FEAYDLISKLPFNASASMWGSLLASCRTHGN----LELAEVAAKKLFDIEPHNSGNYLLL 475

Query: 321 SALSAVAG 328
           S + A  G
Sbjct: 476 SNMYAANG 483


>gi|302807997|ref|XP_002985693.1| hypothetical protein SELMODRAFT_122934 [Selaginella moellendorffii]
 gi|300146602|gb|EFJ13271.1| hypothetical protein SELMODRAFT_122934 [Selaginella moellendorffii]
          Length = 706

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 247/702 (35%), Positives = 387/702 (55%), Gaps = 22/702 (3%)

Query: 2   QTQTLQHSSPIHALQQHLPSRLHWNILKFSSTHK-----ETQQLHALSVKTNLIYHSGIS 56
           + Q  Q ++ I ALQ+   + L   +    S  +     E +++H L  +  L     +S
Sbjct: 13  RQQLGQIAAAIDALQKRKDADLKECVRVIQSCARLGALAEGRRIHQLIRRVGLGSDVYVS 72

Query: 57  SRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDR 116
           + L+ +Y      +L  AR +F+      ++  + +LI     + RS EAL LF ++L +
Sbjct: 73  NHLVMMY--GKCGSLEEARLVFE-ATPAKNVFSWTILITVCAQHGRSQEALALFYEMLKQ 129

Query: 117 FLLPDNFTLPCVIKG-AARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDL 175
            + P + +    I   +A    +  G+ +H L+ + GF       +SLVSMY+K G ++ 
Sbjct: 130 GIQPHSVSFTAAINACSAGPEFLPAGRALHALLRRYGFQDAVVATTSLVSMYSKCGSLEE 189

Query: 176 GRRVFDAMDDKDLVSWNCLIDGYV--KKG--EVEVAMKLFDEMPDRDLFSWTCLVDGFSK 231
             + F++M + + VSWN +I  +   ++G   +    K+F E       ++  L+  + +
Sbjct: 190 SVKTFESMTELNAVSWNAMIAAFAEHRRGLEALRTLQKMFLEGIRACSVTYITLMSAYDQ 249

Query: 232 CGKVEIAREI----FYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSM 287
             +++ AR I         ++++V  N ++N Y K G +  A  +F  M   D+I WN+M
Sbjct: 250 PSQLKSARYIHDCILRTGFDQDVV--NVILNMYGKCGCLQDAEAMFKSMSQPDVIAWNTM 307

Query: 288 IAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGF 347
           IA Y  +G   EAL   E M    V+P+D T VS + A A L  +  G+ +H  +    F
Sbjct: 308 IAAYSQHGHTSEALRFYELMQEEGVVPDDYTYVSVIDACATLGDMEVGKQVHRRLGDRAF 367

Query: 348 VVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNK 407
            V   L   L+ MY KCG ++ A ++F   +K  V  W AMI     H    QA +LF  
Sbjct: 368 QVT-ELANSLVNMYGKCGILDVARSIFDKTAKGSVT-WNAMIGAYAQHSHEQQAFELFLL 425

Query: 408 MCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTG 467
           M   G +P+ ITF+ VL+AC++AGL  +   YF  M  D+G+ P   HYGC+V+ L + G
Sbjct: 426 MRLDGEEPSYITFMSVLSACANAGLPEEAHSYFVCMQQDHGVRPGGGHYGCMVESLGKAG 485

Query: 468 YLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSN 527
            L +A++ I+ MP  P+ + W S L+  R+HG+   G++AA   I++ P+    YV L+ 
Sbjct: 486 RLSDAEALIQGMPFEPDVLTWTSFLANCRSHGDMKRGKFAAKGAIRIDPEASTGYVALAR 545

Query: 528 IYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSE 587
           I+A AG + + S +R++M  RG RK+ G S I+    ++EF  GD+S+P++ EI  +L  
Sbjct: 546 IHADAGDFQEASRIRKLMLDRGIRKNAGRSIIKLGTSVYEFTAGDQSNPRSKEIFDELKR 605

Query: 588 MRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLR 647
           +  ++K AG+ PD T V   +E   +KE  L  HSERLAIAFG+I+    +P+RI+KNLR
Sbjct: 606 LDKEMKRAGYDPDMTHVAHDVE-AGQKEPLLFAHSERLAIAFGIISTSQGTPLRIMKNLR 664

Query: 648 VCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           VC DCH++TKL S I  REIIVRD++RFHHFKNGSCSCKDFW
Sbjct: 665 VCGDCHAMTKLTSKITRREIIVRDSNRFHHFKNGSCSCKDFW 706


>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 697

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 207/571 (36%), Positives = 337/571 (59%), Gaps = 14/571 (2%)

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD 187
           +I   AR  ++ + + IH  +    F    F+ +SL+ +Y K G +   RRVFD M  +D
Sbjct: 70  LITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARD 129

Query: 188 LVSWNCLIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKCGKVEIAREI 241
           + SW  LI GY +    + A+ L   M      P+   F++  L+          I  +I
Sbjct: 130 MCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNG--FTFASLLKAAGASASSGIGEQI 187

Query: 242 FYRMP----NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRF 297
                    + ++   +A+++ Y + G +D A  +FD +E ++ ++WN++IAG+   G  
Sbjct: 188 HALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDG 247

Query: 298 MEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLL 357
              L +   M          T  S  SA+AG+  L +G+W+H++++K+G  +   +G  +
Sbjct: 248 ETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTI 307

Query: 358 IQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA 417
           + MY+K GS+  A  VF  + KK V  W +M+     +G+  +A+  F +M + G+    
Sbjct: 308 LDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQ 367

Query: 418 ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIE 477
           ITF+ +L ACSH GLV +G++YF+MM  +Y +EP I+HY  +VD+L R G L +A   I 
Sbjct: 368 ITFLSILTACSHGGLVKEGKQYFDMM-KEYNLEPEIDHYVTVVDLLGRAGLLNDALVFIF 426

Query: 478 SMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDK 537
            MPM+P   +W +LL   R H N  IG++AA+++ ++ PD  G  V+L NIYA+ GQWD 
Sbjct: 427 KMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWDA 486

Query: 538 VSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGH 597
            + VR+MMK  G +K+P  S +E    +H FV  D +HP+++EI+ K  E+  +++ AG+
Sbjct: 487 AARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRKAGY 546

Query: 598 VPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTK 657
           VP+T  VLL + D++E++A+L+ HSE++A+AF LIN+   + IRI+KN+R+C DCHS  +
Sbjct: 547 VPNTDYVLLHV-DEQERQAKLQYHSEKIALAFALINMPLGATIRIMKNIRICGDCHSAFR 605

Query: 658 LLSGIYNREIIVRDNSRFHHFKNGSCSCKDF 688
            +S ++ REI+VRD +RFHHF +GSCSC D+
Sbjct: 606 YISKVFKREIVVRDTNRFHHFSSGSCSCGDY 636



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 158/331 (47%), Gaps = 10/331 (3%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           AR +FD +     +  +  LI  Y  N    EAL L   +L     P+ FT   ++K A 
Sbjct: 118 ARRVFDGMPAR-DMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAG 176

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
              +   G+QIH L  K  +  D +V S+L+ MYA+ G +D+   VFD ++ K+ VSWN 
Sbjct: 177 ASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNA 236

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRM--PN 247
           LI G+ +KG+ E  + +F EM         F+++ +    +  G +E  + +   M    
Sbjct: 237 LIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSG 296

Query: 248 RNLVSW--NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLE 305
             L ++  N +++ Y K+G +  A ++FD ++ +D++TWNSM+  +   G   EA+   E
Sbjct: 297 ERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFE 356

Query: 306 TMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCG 365
            M    V  N  T +S L+A +   ++ +G+     + +     +      ++ +  + G
Sbjct: 357 EMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMKEYNLEPEIDHYVTVVDLLGRAG 416

Query: 366 SIESALT-VFRAISKKKVGHWTAMIVGLGMH 395
            +  AL  +F+   K     W A++    MH
Sbjct: 417 LLNDALVFIFKMPMKPTAAVWGALLGSCRMH 447



 Score = 72.8 bits (177), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 83/182 (45%), Gaps = 2/182 (1%)

Query: 321 SALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKK 380
           S ++A A    L+  R +H+++  + F     L   LI +Y KCG++  A  VF  +  +
Sbjct: 69  SLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPAR 128

Query: 381 KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYF 440
            +  WT++I G   + M  +AL L   M R   KP   TF  +L A   +     G +  
Sbjct: 129 DMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIH 188

Query: 441 NMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGN 500
            + +  Y     +     L+D+  R G ++ A +  + +  + N V W +L++G    G+
Sbjct: 189 ALTVK-YDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESK-NGVSWNALIAGFARKGD 246

Query: 501 KD 502
            +
Sbjct: 247 GE 248


>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 196/440 (44%), Positives = 285/440 (64%), Gaps = 3/440 (0%)

Query: 252 SWNAMINGYMKAGDVDSACELFDDMEIRDL--ITWNSMIAGYELNGRFMEALELLETMLI 309
           S N +I+ Y+    ++ A  +FD+M  RD   ++WN+MIA Y  + R  EA  L + M +
Sbjct: 131 SLNNLIHMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFDRMRL 190

Query: 310 GDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIES 369
            +V+ +     S LSA  GL  L +G+W+H YI K+G  +D  L T +I MY KCG +E 
Sbjct: 191 ENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEK 250

Query: 370 ALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSH 429
           A  VF  + +K +  W  MI GL MHG    A++LF +M R  + P  ITF+ VL+AC+H
Sbjct: 251 ASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAH 310

Query: 430 AGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWM 489
           +GLV +G+ YF  M    G++P +EH+GC+VD+L R G LEEA+  I  MP+ P+  +  
Sbjct: 311 SGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLG 370

Query: 490 SLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRG 549
           +L+   R HGN ++GE     +I++ P   G YV+L+N+YA+AG+W+ V++VR++M  RG
Sbjct: 371 ALVGACRIHGNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRG 430

Query: 550 FRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIE 609
            +K PG S IE    + EF+ G ++HPQ  EI++KL E+   +++ G+VPDT  VL  I 
Sbjct: 431 VKKAPGFSMIESESGVDEFIAGGRAHPQAKEIYAKLDEILETIRSIGYVPDTDGVLHDI- 489

Query: 610 DQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIV 669
           D++EKE  L  HSE+LAIAFGL+  K    +RI KNLR+C DCH  +KL+S +Y+REII+
Sbjct: 490 DEEEKENPLYYHSEKLAIAFGLLKTKPGETLRISKNLRICRDCHQASKLISKVYDREIII 549

Query: 670 RDNSRFHHFKNGSCSCKDFW 689
           RD +RFHHF+ G CSCKD+W
Sbjct: 550 RDRNRFHHFRMGGCSCKDYW 569



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 128/255 (50%), Gaps = 14/255 (5%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHP-SLVLYNLL 93
           +E +Q+HA  +K          + L+ +YV+    +L  AR +FD + Q   + V +N +
Sbjct: 111 EEGKQIHAHVLKFGFGADGFSLNNLIHMYVN--FQSLEQARRVFDNMPQRDRNSVSWNAM 168

Query: 94  IKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGF 153
           I  YV + R HEA  LF  +    ++ D F    ++     LGA+++GK IHG + K G 
Sbjct: 169 IAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGI 228

Query: 154 GFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDE 213
             D  + ++++ MY K G ++    VF+ +  K + SWNC+I G    G+ E A++LF E
Sbjct: 229 ELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKE 288

Query: 214 MPDRDLFS--WTCLVDGFSKC---GKVEIAREIFYRMPN-----RNLVSWNAMINGYMKA 263
           M +R++ +      V+  S C   G VE  +  F  M         +  +  M++   +A
Sbjct: 289 M-EREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRA 347

Query: 264 GDVDSACELFDDMEI 278
           G ++ A +L ++M +
Sbjct: 348 GLLEEARKLINEMPV 362


>gi|356496056|ref|XP_003516886.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 225/568 (39%), Positives = 347/568 (61%), Gaps = 14/568 (2%)

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYA--KFGEIDLGRRVFDAMDDKDLVSW 191
           R  +++E KQ+H  + KLG  +D F  S+LV+  A  ++G ++    +F  +++     +
Sbjct: 40  RCKSMEEFKQVHAHILKLGLFYDSFCGSNLVASCALSRWGSMEYACSIFSQIEEPGSFEY 99

Query: 192 NCLIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFS-----KCGKVEIAREIF 242
           N +I G V   ++E A+ L+ EM +R    D F++  ++   S     K G V+I   +F
Sbjct: 100 NTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLVALKEG-VQIHAHVF 158

Query: 243 YRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALE 302
                 ++   N +I+ Y K G ++ A  +F+ M+ + + +W+S+I  +     + E L 
Sbjct: 159 KAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHASVEMWHECLM 218

Query: 303 LLETML-IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMY 361
           LL  M   G     ++ LVSALSA   L   N GR +H  +++N   ++ V+ T LI MY
Sbjct: 219 LLGDMSGEGRHRAEESILVSALSACTHLGSPNLGRCIHGILLRNISELNVVVKTSLIDMY 278

Query: 362 SKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFI 421
            KCGS+E  L VF+ ++ K    +T MI GL +HG   +A+ +F+ M   G+ P  + ++
Sbjct: 279 VKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHGRGREAVRVFSDMLEEGLTPDDVVYV 338

Query: 422 GVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPM 481
           GVL+ACSHAGLVN+G + FN M  ++ I+PTI+HYGC+VD++ R G L+EA   I+SMP+
Sbjct: 339 GVLSACSHAGLVNEGLQCFNRMQFEHMIKPTIQHYGCMVDLMGRAGMLKEAYDLIKSMPI 398

Query: 482 RPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEV 541
           +PN V+W SLLS  + H N +IGE AA N+ ++     G Y+VL+N+YA A +W  V+ +
Sbjct: 399 KPNDVVWRSLLSACKVHHNLEIGEIAAENIFRLNKHNPGDYLVLANMYARAKKWANVARI 458

Query: 542 REMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDT 601
           R  M ++   + PG S +E    +++FV  DKS P  + I+  + +M  +LK  G+ PD 
Sbjct: 459 RTEMAEKHLVQTPGFSLVEANRNVYKFVSQDKSQPICETIYDMIQQMEWQLKFEGYTPDM 518

Query: 602 TQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSG 661
           +QVLL + D+ EK   L++HS++LAIAF LI     SPIRI +NLR+CNDCH+ TK +S 
Sbjct: 519 SQVLLDV-DEDEKRQRLKHHSQKLAIAFALIQTSEGSPIRISRNLRMCNDCHTYTKFISV 577

Query: 662 IYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           IY REI VRD +RFHHFK+G+CSCKD+W
Sbjct: 578 IYEREITVRDRNRFHHFKDGTCSCKDYW 605



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 120/411 (29%), Positives = 196/411 (47%), Gaps = 43/411 (10%)

Query: 26  NILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHP 85
           ++LK   + +E +Q+HA  +K  L Y S   S L++        ++ YA SIF +I + P
Sbjct: 36  SLLKRCKSMEEFKQVHAHILKLGLFYDSFCGSNLVASCALSRWGSMEYACSIFSQI-EEP 94

Query: 86  SLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIH 145
               YN +I+  V +    EAL L+ ++L+R + PDNFT P V+K  + L A+KEG QIH
Sbjct: 95  GSFEYNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLVALKEGVQIH 154

Query: 146 GLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVE 205
             VFK G   D FV + L+SMY K G I+    VF+ MD+K + SW+ +I  +       
Sbjct: 155 AHVFKAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHASVEMWH 214

Query: 206 VAMKLFDEMP--DRDLFSWTCLVDGFSKC---GKVEIAREI----FYRMPNRNLVSWNAM 256
             + L  +M    R     + LV   S C   G   + R I       +   N+V   ++
Sbjct: 215 ECLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNLGRCIHGILLRNISELNVVVKTSL 274

Query: 257 INGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPND 316
           I+ Y+K G ++    +F +M  ++  ++  MIAG  ++GR  EA+ +   ML   + P+D
Sbjct: 275 IDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHGRGREAVRVFSDMLEEGLTPDD 334

Query: 317 ATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRA 376
              V  LSA +   ++N+G                      +Q +++          F  
Sbjct: 335 VVYVGVLSACSHAGLVNEG----------------------LQCFNR--------MQFEH 364

Query: 377 ISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNAC 427
           + K  + H+  M+  +G  GM  +A DL      M +KP  + +  +L+AC
Sbjct: 365 MIKPTIQHYGCMVDLMGRAGMLKEAYDLIKS---MPIKPNDVVWRSLLSAC 412


>gi|15228653|ref|NP_189568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273910|sp|Q9LS72.1|PP261_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g29230
 gi|9293916|dbj|BAB01819.1| unnamed protein product [Arabidopsis thaliana]
 gi|332644032|gb|AEE77553.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 600

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/557 (38%), Positives = 339/557 (60%), Gaps = 7/557 (1%)

Query: 36  ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIK 95
           + +QLHA  ++ NL     I+ +L+S        NL  A  +F+++ Q P++ L N LI+
Sbjct: 34  QVKQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNL--AVRVFNQV-QEPNVHLCNSLIR 90

Query: 96  CYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF 155
            +  N + ++A  +F ++    L  DNFT P ++K  +    +   K +H  + KLG   
Sbjct: 91  AHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNHIEKLGLSS 150

Query: 156 DKFVLSSLVSMYAKFGEIDL--GRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDE 213
           D +V ++L+  Y++ G + +    ++F+ M ++D VSWN ++ G VK GE+  A +LFDE
Sbjct: 151 DIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARRLFDE 210

Query: 214 MPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELF 273
           MP RDL SW  ++DG+++C ++  A E+F +MP RN VSW+ M+ GY KAGD++ A  +F
Sbjct: 211 MPQRDLISWNTMLDGYARCREMSKAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMF 270

Query: 274 DDMEI--RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAV 331
           D M +  ++++TW  +IAGY   G   EA  L++ M+   +  + A ++S L+A     +
Sbjct: 271 DKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISILAACTESGL 330

Query: 332 LNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVG 391
           L+ G  +HS + ++    +  +   L+ MY+KCG+++ A  VF  I KK +  W  M+ G
Sbjct: 331 LSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHG 390

Query: 392 LGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP 451
           LG+HG   +A++LF++M R G++P  +TFI VL +C+HAGL+++G  YF  M   Y + P
Sbjct: 391 LGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVP 450

Query: 452 TIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNL 511
            +EHYGCLVD+L R G L+EA   +++MPM PN VIW +LL   R H   DI +   +NL
Sbjct: 451 QVEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDNL 510

Query: 512 IKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVG 571
           +K+ P   G Y +LSNIYAAA  W+ V+++R  MK  G  K  G+SS+E    +HEF V 
Sbjct: 511 VKLDPCDPGNYSLLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSVELEDGIHEFTVF 570

Query: 572 DKSHPQTDEIHSKLSEM 588
           DKSHP++D+I+  L  +
Sbjct: 571 DKSHPKSDQIYQMLGSL 587



 Score = 48.9 bits (115), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 90/224 (40%), Gaps = 13/224 (5%)

Query: 330 AVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMI 389
           A LN+ + +H+ I++     D  +   LI   S C     A+ VF  + +  V    ++I
Sbjct: 30  ANLNQVKQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQVQEPNVHLCNSLI 89

Query: 390 VGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGI 449
                +    QA  +F++M R G+     T+  +L ACS    +   +   N  I   G+
Sbjct: 90  RAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHN-HIEKLGL 148

Query: 450 EPTIEHYGCLVDILCRTGYL--EEAKSTIESMPMRPNFVIWMSLLSGARNHGN-KDIGEY 506
              I     L+D   R G L   +A    E M  R + V W S+L G    G  +D    
Sbjct: 149 SSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSER-DTVSWNSMLGGLVKAGELRD---- 203

Query: 507 AANNLIKVAP--DTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548
            A  L    P  D I    +L   YA   +  K  E+ E M +R
Sbjct: 204 -ARRLFDEMPQRDLISWNTMLDG-YARCREMSKAFELFEKMPER 245


>gi|296083568|emb|CBI23560.3| unnamed protein product [Vitis vinifera]
          Length = 497

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 197/490 (40%), Positives = 316/490 (64%), Gaps = 3/490 (0%)

Query: 202 GEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEI-AREIFYRMPNRNL-VSWNAMING 259
           G V+ + K+F++MP+ ++ SWT ++  + + G+ +  A E+F +M + ++    N++I+ 
Sbjct: 9   GSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISASVNCVGNSLISM 68

Query: 260 YMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATL 319
           Y ++G ++ A + FD +  ++L+++N+++ GY  N +  EA  L   +    +  +  T 
Sbjct: 69  YARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTF 128

Query: 320 VSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK 379
            S LS  A +  + KG  +H  ++K G+  +  +   LI MYS+CG+IE+A  VF  +  
Sbjct: 129 ASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMED 188

Query: 380 KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRY 439
           + V  WT+MI G   HG AT+AL++F+KM   G KP  IT++ VL+ACSH G++++G+++
Sbjct: 189 RNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKH 248

Query: 440 FNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
           FN M  ++GI P +EHY C+VD+L R+G L EA   I SMP+  + ++W +LL   R HG
Sbjct: 249 FNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHG 308

Query: 500 NKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSI 559
           N ++G +AA  +++  PD    Y++LSN++A+AGQW  V ++R+ MK+R   K+ G S I
Sbjct: 309 NTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWI 368

Query: 560 EHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELE 619
           E    +H F VG+ SHPQ  +I+ +L ++ +K+K  G++PDT  VL  IE++ +KE  L 
Sbjct: 369 EVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEE-QKEQFLF 427

Query: 620 NHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFK 679
            HSE++A+AFGLI+     PIRI KNLRVC DCH+  K +S    REI+VRD++RFHH K
Sbjct: 428 QHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIK 487

Query: 680 NGSCSCKDFW 689
           NG CSC D+W
Sbjct: 488 NGVCSCNDYW 497



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 147/287 (51%), Gaps = 18/287 (6%)

Query: 55  ISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL 114
           + + L+S+Y       +  AR  FD IL   +LV YN ++  Y  N +S EA  LF ++ 
Sbjct: 61  VGNSLISMYARS--GRMEDARKAFD-ILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIA 117

Query: 115 DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEID 174
           D  +    FT   ++ GAA +GA+ +G+QIHG + K G+  ++ + ++L+SMY++ G I+
Sbjct: 118 DTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIE 177

Query: 175 LGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFS 230
              +VF+ M+D++++SW  +I G+ K G    A+++F +M +     +  ++  ++   S
Sbjct: 178 AAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACS 237

Query: 231 KCGKVEIAREIFYRMPNRN-----LVSWNAMINGYMKAGDVDSACELFDDMEI-RDLITW 284
             G +   ++ F  M   +     +  +  M++   ++G +  A E  + M +  D + W
Sbjct: 238 HVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVW 297

Query: 285 NSMIAGYELNGRFMEALELLETMLIGDVLPNDAT---LVSALSAVAG 328
            +++    ++G         E +L  +  P+D     L+S L A AG
Sbjct: 298 RTLLGACRVHGNTELGRHAAEMIL--EQEPDDPAAYILLSNLHASAG 342


>gi|225428400|ref|XP_002283651.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
 gi|297744424|emb|CBI37686.3| unnamed protein product [Vitis vinifera]
          Length = 571

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/531 (40%), Positives = 320/531 (60%), Gaps = 13/531 (2%)

Query: 171 GEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTC 224
           G++     + +++  ++    N +I  Y +  +   A+ LF  M      P  D F++  
Sbjct: 42  GDLTYAHLILNSLSTQNSFFHNTMIRAYSQTPDPTQALHLFLSMLCQPTSPRPDKFTYPF 101

Query: 225 LVDGFSKCGKVEIAREIFYRMPNRNLVS----WNAMINGYMKAGDVDSACELFDDMEIRD 280
           L+   ++  +  + +++   +    L S     N +I+ Y   G    A ++F  M  RD
Sbjct: 102 LLKSCARLKQPRVGKQLHGLIYKSGLESDRYVSNGLIHMYSSCGKSGRAYKVFGKMRDRD 161

Query: 281 LITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHS 340
           +++W SMI G+  + R +EA+ L E M+   V PN+AT+VS L A A    +  GR +  
Sbjct: 162 VVSWTSMIDGFVDDDRALEAIRLFEEMVEDGVEPNEATVVSVLRACADAGAVGMGRRVQG 221

Query: 341 YIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQ 400
            I +    ++  + T LI MY+KCGSI SA  VF  I  K V  WTAMI GL  HG+  +
Sbjct: 222 VIEERKIGLEANVRTALIDMYAKCGSIGSARKVFDGIVNKDVFAWTAMISGLANHGLCEE 281

Query: 401 ALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLV 460
           A+ LF++M   G++P   T   VL+AC +AG  ++G  YFN M   YGI+PTI+HYGC+V
Sbjct: 282 AVTLFDQMESFGLRPDERTMTAVLSACRNAGWFSEGFAYFNSMWCKYGIKPTIQHYGCMV 341

Query: 461 DILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANN--LIKVAPDT 518
           D+L RTG+L+EA+  I  MP+ P+ V+W +L+  ++ HG+ D  E    +  L+K+  D 
Sbjct: 342 DLLARTGHLDEAEEFIRKMPIEPDVVLWRTLIWASKVHGDIDRSEQLMKDRGLLKMDSDD 401

Query: 519 IGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQT 578
            G YV+L N+YA+AG+W   +++RE+M ++G  K PG S IE  G++HEF  GD  H + 
Sbjct: 402 CGSYVLLGNVYASAGKWHDKAKMRELMNQKGLSKPPGCSRIEVDGLVHEFAAGDSGHIEA 461

Query: 579 DEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRS 638
           ++I++KL E+  +LKA G+ P  ++VLL I D KEK  +L +HSE+LA+AFGLI     +
Sbjct: 462 EKIYAKLDEVEERLKAEGYHPKLSEVLLEI-DNKEKAFQLRHHSEKLAVAFGLIKTSPGT 520

Query: 639 PIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            IRIVKNLR C DCHSV KL+S IY ++IIVRD  RFHHF NG CSCKD+W
Sbjct: 521 EIRIVKNLRSCEDCHSVLKLISKIYQQDIIVRDRIRFHHFINGDCSCKDYW 571



 Score =  135 bits (340), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 108/397 (27%), Positives = 188/397 (47%), Gaps = 31/397 (7%)

Query: 12  IHALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNL 71
           I +L Q +  +LH  ILK     K+T+ L      T L   + +S             +L
Sbjct: 3   ITSLSQAM--QLHAQILKSPDPKKQTRNL------TPLFTFAALSP----------AGDL 44

Query: 72  HYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFL--LPDNFTLPCVI 129
            YA  I + +    S   +N +I+ Y       +AL LF  +L +     PD FT P ++
Sbjct: 45  TYAHLILNSLSTQNSF-FHNTMIRAYSQTPDPTQALHLFLSMLCQPTSPRPDKFTYPFLL 103

Query: 130 KGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLV 189
           K  ARL   + GKQ+HGL++K G   D++V + L+ MY+  G+     +VF  M D+D+V
Sbjct: 104 KSCARLKQPRVGKQLHGLIYKSGLESDRYVSNGLIHMYSSCGKSGRAYKVFGKMRDRDVV 163

Query: 190 SWNCLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRM 245
           SW  +IDG+V       A++LF+EM +  +     +   ++   +  G V + R +   +
Sbjct: 164 SWTSMIDGFVDDDRALEAIRLFEEMVEDGVEPNEATVVSVLRACADAGAVGMGRRVQGVI 223

Query: 246 PNRNL-VSWN---AMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEAL 301
             R + +  N   A+I+ Y K G + SA ++FD +  +D+  W +MI+G   +G   EA+
Sbjct: 224 EERKIGLEANVRTALIDMYAKCGSIGSARKVFDGIVNKDVFAWTAMISGLANHGLCEEAV 283

Query: 302 ELLETMLIGDVLPNDATLVSALSAVAGLAVLNKG-RWMHSYIVKNGFVVDGVLGTLLIQM 360
            L + M    + P++ T+ + LSA       ++G  + +S   K G          ++ +
Sbjct: 284 TLFDQMESFGLRPDERTMTAVLSACRNAGWFSEGFAYFNSMWCKYGIKPTIQHYGCMVDL 343

Query: 361 YSKCGSIESALTVFRAIS-KKKVGHWTAMIVGLGMHG 396
            ++ G ++ A    R +  +  V  W  +I    +HG
Sbjct: 344 LARTGHLDEAEEFIRKMPIEPDVVLWRTLIWASKVHG 380


>gi|326504484|dbj|BAJ91074.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 823

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 232/634 (36%), Positives = 364/634 (57%), Gaps = 22/634 (3%)

Query: 70  NLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVI 129
           +L  AR +F+ +++  ++V++ L+I  YV    + +A+ LF  +L+    PD +T+  ++
Sbjct: 198 DLVAARKVFNGLVER-TVVVWTLMITRYVQGGCAGKAVELFLGMLEDGFEPDGYTMSSMV 256

Query: 130 KGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFG---EIDLGRRVFDAMDDK 186
              A  G+   G+Q+H LV +LG   D  V   LV MY K      ++  R+VF  M   
Sbjct: 257 SACAEQGSAGLGQQLHSLVLRLGLVSDTCVSCGLVDMYTKLQMEQSMECARKVFKRMPTH 316

Query: 187 DLVSWNCLIDGYVKKG-----EVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREI 241
           +++SW  LI GYV+ G      VE+  ++ +E  + +  +++ L+   +     +  R+I
Sbjct: 317 NVMSWTALISGYVQCGGQENNAVELLCEMLNESIEPNHLTYSSLLKACANLSDQDSGRQI 376

Query: 242 FYR-----MPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGR 296
             R     + N N+V  NA+++ Y ++G ++ A + FD +  R+L++ +S I   E    
Sbjct: 377 HARVMKTSIGNVNVVG-NALVSMYAESGCMEEARKAFDQLYERNLLSTSSDIG--ETGRS 433

Query: 297 FMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTL 356
                  +E+M   DV  +  T  S LSA A + +  KG+ +H+  +K GF  D  +   
Sbjct: 434 NASWSSQIESM---DVGVSTFTFASLLSAAATVGLPTKGQQLHALSIKTGFESDKGISNS 490

Query: 357 LIQMYSKCGSIESALTVFRAISKK-KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKP 415
           L+ MYS+CG ++ A   F  +     V  WT++I  L  HG A +AL LF+ M   G+KP
Sbjct: 491 LVSMYSRCGYLDDACRAFDEMEDDHNVISWTSIISALAKHGHAERALSLFHDMILSGVKP 550

Query: 416 TAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKST 475
             +T+I VL+ACSH GLV +G+ YF  M  D+ + P +EHY C+VD+L R+G ++EA   
Sbjct: 551 NDVTYIAVLSACSHVGLVKEGKEYFRSMQKDHRLIPRMEHYACMVDLLARSGLVQEALEF 610

Query: 476 IESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQW 535
           I  MP + + ++W +LL   R + N +IGE AA ++I + P     YV+LSN+YA  G W
Sbjct: 611 INEMPCKADALVWKTLLGACRTYENIEIGEIAARHVIDLEPQDPAPYVLLSNLYAHGGLW 670

Query: 536 DKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAA 595
           D+V+ +R +M+ R   K+ G S +     +HEF  GD SHP+  EI++KL+ +  ++K  
Sbjct: 671 DEVARIRSLMRHRNLSKETGLSWMHVGNTIHEFRAGDTSHPRAQEIYAKLAVLIREIKDI 730

Query: 596 GHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSV 655
           G+VPDT+ VL  + D K KE  L  HSE++A+AFGLI      PIRI KNLRVC DCHS 
Sbjct: 731 GYVPDTSIVLHDMSD-KLKEQCLLQHSEKIAVAFGLITTLPTKPIRIFKNLRVCADCHSA 789

Query: 656 TKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            K +S    REII+RD++RFH  K+G CSC ++W
Sbjct: 790 IKYISKSTGREIILRDSNRFHRMKDGKCSCGEYW 823



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 110/421 (26%), Positives = 191/421 (45%), Gaps = 27/421 (6%)

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDD-KDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
           D  V +SL++MY+K G +   RRVFD M   +DLVSW  +     + G  + A+ L  EM
Sbjct: 78  DALVANSLLTMYSKCGHVRAARRVFDGMRGLRDLVSWTAMAFCLTRNGAEQEALVLLGEM 137

Query: 215 PDRDL----FSWTCLVDG------FSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAG 264
            +  L    F+             F   G   +   I       ++    A+I+ + + G
Sbjct: 138 LESGLRPNAFTLCAAAHACFPGELFRSSGGTVLGFAIKTGFWGTDVSVGCALIDMFARNG 197

Query: 265 DVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS 324
           D+ +A ++F+ +  R ++ W  MI  Y   G   +A+EL   ML     P+  T+ S +S
Sbjct: 198 DLVAARKVFNGLVERTVVVWTLMITRYVQGGCAGKAVELFLGMLEDGFEPDGYTMSSMVS 257

Query: 325 AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKC---GSIESALTVFRAISKKK 381
           A A       G+ +HS +++ G V D  +   L+ MY+K     S+E A  VF+ +    
Sbjct: 258 ACAEQGSAGLGQQLHSLVLRLGLVSDTCVSCGLVDMYTKLQMEQSMECARKVFKRMPTHN 317

Query: 382 VGHWTAMIVG-LGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR-Y 439
           V  WTA+I G +   G    A++L  +M    ++P  +T+  +L AC++    + GR+ +
Sbjct: 318 VMSWTALISGYVQCGGQENNAVELLCEMLNESIEPNHLTYSSLLKACANLSDQDSGRQIH 377

Query: 440 FNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
             +M    G    + +   LV +   +G +EEA+   + +  R       +LLS + + G
Sbjct: 378 ARVMKTSIGNVNVVGN--ALVSMYAESGCMEEARKAFDQLYER-------NLLSTSSDIG 428

Query: 500 NKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAA--GQWDKVSEVREMMKKRGFRKDPGSS 557
                  + ++ I+     +  +   S + AAA  G   K  ++  +  K GF  D G S
Sbjct: 429 ETGRSNASWSSQIESMDVGVSTFTFASLLSAAATVGLPTKGQQLHALSIKTGFESDKGIS 488

Query: 558 S 558
           +
Sbjct: 489 N 489



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 103/249 (41%), Gaps = 38/249 (15%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           QQLHALS+KT      GIS+ L+S+Y       L  A   FD +    +++ +  +I   
Sbjct: 470 QQLHALSIKTGFESDKGISNSLVSMY--SRCGYLDDACRAFDEMEDDHNVISWTSIISAL 527

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
             +  +  AL+LF D++   + P++ T   V+   + +G +KEGK+              
Sbjct: 528 AKHGHAERALSLFHDMILSGVKPNDVTYIAVLSACSHVGLVKEGKEY------------- 574

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
                       F  +    R+   M+      + C++D   + G V+ A++  +EMP +
Sbjct: 575 ------------FRSMQKDHRLIPRMEH-----YACMVDLLARSGLVQEALEFINEMPCK 617

Query: 218 -DLFSWTCLVDGFSKCGKVEI----AREIFYRMPNRNLVSWNAMINGYMKAGDVDSACEL 272
            D   W  L+        +EI    AR +    P ++   +  + N Y   G  D    +
Sbjct: 618 ADALVWKTLLGACRTYENIEIGEIAARHVIDLEP-QDPAPYVLLSNLYAHGGLWDEVARI 676

Query: 273 FDDMEIRDL 281
              M  R+L
Sbjct: 677 RSLMRHRNL 685


>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 658

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/593 (35%), Positives = 338/593 (56%), Gaps = 46/593 (7%)

Query: 142 KQIHGLVFKLGFGFDKFVLSSLVSMYAKFG-EID-LGRRVFDAMDDKDLVSWNCLIDGYV 199
           KQIHG V + G     ++L+ L+    K G  +D   RRV + +  ++   W  +I GY 
Sbjct: 67  KQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYPRRVIEPVQFRNPFLWTAVIRGYT 126

Query: 200 KKGEVEVAMKLFDEMPDRDL----FSWTCL------------------------------ 225
            +G+ + A+ ++  M   ++    F+++ L                              
Sbjct: 127 IEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGSMGDLNLGRQFHAQTFRLRGFCFVY 186

Query: 226 -----VDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRD 280
                +D + KCG +  AR++F  MP R+++SW  +I  Y + G+++SA +LF+ +  +D
Sbjct: 187 VGNTMIDMYVKCGSIVCARKVFDEMPERDVISWTELIAAYARVGNMESAADLFESLPTKD 246

Query: 281 LITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHS 340
           ++ W +M+ G+  N +  EALE  + M    +  ++ T+   +SA A L           
Sbjct: 247 MVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQ 306

Query: 341 YIVKNGFVVDG--VLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMA 398
              K+G+      V+G+ LI MYSKCG++E A+ VF +++ K V  +++MI+GL  HG A
Sbjct: 307 IAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFVSMNNKNVFSYSSMILGLATHGRA 366

Query: 399 TQALDLFNKM-CRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYG 457
            +ALDLF+ M  +  +KP  +TF+G L ACSH+GLV+ GR+ F  M   +G+EPT +HY 
Sbjct: 367 QEALDLFHYMVTQTAIKPNTVTFVGALTACSHSGLVDQGRQVFASMYQTFGVEPTRDHYT 426

Query: 458 CLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPD 517
           C+VD+L R G L+EA   I++M + P+  +W +LL   R H N DI E AA +L ++ PD
Sbjct: 427 CMVDLLGRAGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPDIAEIAAEHLFELEPD 486

Query: 518 TIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSS-SIEHRGVLHEFVVGDKSHP 576
            IG Y++LSN+Y++AG W  V  VR+++K++G +K P  S  ++  G +H+F  G+ +HP
Sbjct: 487 IIGNYILLSNVYSSAGDWGGVLSVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFPGNLNHP 546

Query: 577 QTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKS 636
            + +I  KL E+  +L A G+ PD + V   + D   K   L  H+E+LA+AF L+    
Sbjct: 547 MSKKIQDKLEELVERLTALGYQPDLSSVPYDVSDNA-KRLILIQHTEKLALAFSLLTTNR 605

Query: 637 RSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
              I+I+KNLR+C DCH   +L S +  R II+RDN RFHHF++G+CSC DFW
Sbjct: 606 DYTIKIMKNLRMCQDCHMFMRLASEVTGRVIIMRDNMRFHHFRSGACSCGDFW 658


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 234/637 (36%), Positives = 354/637 (55%), Gaps = 60/637 (9%)

Query: 77  IFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRF--LLPDNFTLPCVIKGAAR 134
           +FD + +  + V +N +I         ++AL LF  + +    + PD FT   ++   A 
Sbjct: 232 VFDEMGER-NQVTWNSIISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCAN 290

Query: 135 LGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCL 194
                +G+QIH  + +     +  V + LV MY++ G ++  + +F+ M +++  SWN +
Sbjct: 291 QRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSM 350

Query: 195 IDGYVKKGEVEVAMKLFDEMP----DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNL 250
           I+GY + GE + A++LF +M       D FS + ++         +  RE+       N 
Sbjct: 351 IEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGREL------HNF 404

Query: 251 VSWNAM----------INGYMKAGDVDSACELFDDMEIRDLIT--WNSMIAGYELNG--- 295
           +  N M          ++ Y K G +D A +++D    +D  T  WNS++AGY   G   
Sbjct: 405 IVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILAGYANKGLKK 464

Query: 296 -RFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLG 354
             F   LE+LE+ +  DVL    T+V+ ++ +                         VL 
Sbjct: 465 ESFNHFLEMLESDIEYDVL----TMVTIVNLL-------------------------VLE 495

Query: 355 TLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMK 414
           T L+ MYSKCG+I  A TVF  ++ K +  W AMI G   HG + +AL L+ +M + GM 
Sbjct: 496 TALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMY 555

Query: 415 PTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKS 474
           P  +TF+ +L+ACSH GLV +G R F  M  DY IE   EHY C+VD+L R G LE+AK 
Sbjct: 556 PNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKE 615

Query: 475 TIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQ 534
            +E MP+ P    W +LL   R H + D+G  AA  L ++ P   G YV++SNIYAAAG+
Sbjct: 616 FVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGR 675

Query: 535 WDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKA 594
           W +V ++R+MMK +G +KDPG S IE    +  F  G K+HP+T+EI++ L  +  + K 
Sbjct: 676 WKEVEDIRQMMKMKGVKKDPGVSWIEINSEIQIFHAGSKTHPKTEEIYNNLRHLTLQSKG 735

Query: 595 AGHVPDTTQVLLCIEDQKEKEAE--LENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDC 652
            G++PDT+ +L  ++D KE+E E  L  HSERLA++ GLI++  +S IR+ KNLR+C DC
Sbjct: 736 LGYIPDTSFILQNVKDIKEEEEEEYLLQHSERLALSLGLISLPKKSTIRVFKNLRICGDC 795

Query: 653 HSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           H+ TK +S I  R II RD +RFHHF+NG CSC D+W
Sbjct: 796 HTATKFISKITGRRIIARDTNRFHHFENGKCSCGDYW 832



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 126/275 (45%), Gaps = 9/275 (3%)

Query: 260 YMKAGDVDSAC---ELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPND 316
           Y ++G +D  C   +LF++M  R+L  WN+MI  Y     +MEA  + + ML   V P++
Sbjct: 116 YARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEAWGIFDRMLKIGVCPDN 175

Query: 317 ATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRA 376
            T  SAL     L   + G+ +HS ++  GF  D  +G  LI MY+KC   ES L VF  
Sbjct: 176 FTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDE 235

Query: 377 ISKKKVGHWTAMIVGLGMHGMATQALDLFNKM--CRMGMKPTAITFIGVLNACSHAGLVN 434
           + ++    W ++I      G    AL LF +M     G++P   TF  +L  C++    N
Sbjct: 236 MGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDN 295

Query: 435 DGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG 494
            GR+    +I    I   I     LV +    G L  AK     M  R N   W S++ G
Sbjct: 296 QGRQIHAHLIRA-NITKNIIVETELVHMYSECGRLNYAKEIFNRMAER-NAYSWNSMIEG 353

Query: 495 ARNHG--NKDIGEYAANNLIKVAPDTIGCYVVLSN 527
            + +G   + +  +    L  + PD      +LS+
Sbjct: 354 YQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSS 388


>gi|356573508|ref|XP_003554900.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Glycine max]
          Length = 629

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 239/613 (38%), Positives = 345/613 (56%), Gaps = 52/613 (8%)

Query: 128 VIKGAARLGAIKEGKQIHG--LVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAM-- 183
           +++  AR  A++ G+Q+H    V  L F    F+L++L+ +YA        R++FD +  
Sbjct: 18  LLRQCARASAVRPGEQLHAAATVSGLLFSPSSFLLNALLHLYASCPLPSHARKLFDRIPH 77

Query: 184 DDKDLVSWNCLI----------------------DGYVKKGEVEVAMKLFDE--MPD--- 216
             KD V +  LI                      DG      +    KL D   +P    
Sbjct: 78  SHKDSVDYTALIRCSHPLDALRFYLQMRQRALPLDGVALICALGACSKLGDSNLVPQMHV 137

Query: 217 --------RDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDS 268
                   R       ++DG+ KCG V  AR +F  +   ++VSW  ++ G +K   V+S
Sbjct: 138 GVVKFGFLRHTKVLNGVMDGYVKCGLVGEARRVFEEIEEPSVVSWTVVLEGVVKCEGVES 197

Query: 269 ACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLP---NDATLVSALSA 325
              +FD+M  R+ + W  +I GY  +G   EA  LL+ M+ G       N  TL S LSA
Sbjct: 198 GKVVFDEMPERNEVAWTVLIKGYVGSGFTKEAFLLLKEMVFGCGFGFGLNSITLCSVLSA 257

Query: 326 VAGLAVLNKGRWMHSYIVKN-GFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGH 384
            +    ++ GRW+H Y VK  G+ +  ++GT L+ MY+KCG I +AL VFR + ++ V  
Sbjct: 258 CSQSGDVSVGRWVHCYAVKAVGWDLGVMVGTSLVDMYAKCGRISAALMVFRHMPRRNVVA 317

Query: 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMI 444
           W AM+ GL MHGM    +++F  M    +KP A+TF+ +L++CSH+GLV  G +YF+ + 
Sbjct: 318 WNAMLCGLAMHGMGKVVVEMFACMVEE-VKPDAVTFMALLSSCSHSGLVEQGWQYFHDLE 376

Query: 445 NDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIG 504
             YGI P IEHY C+VD+L R G LEEA+  ++ +P+ PN V+  SLL     HG   +G
Sbjct: 377 RAYGIRPEIEHYACMVDLLGRAGRLEEAEDLVKKLPIPPNEVVLGSLLGACYAHGKLRLG 436

Query: 505 EYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGV 564
           E     L+++ P     +++LSN+YA  G+ DK + +R+++K RG RK PG SSI   G 
Sbjct: 437 EKIMRELVQMDPLNTEYHILLSNMYALCGKADKANSLRKVLKNRGIRKVPGMSSIYVDGQ 496

Query: 565 LHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDT-TQVLL-------CIEDQKEKEA 616
           LH F+ GDKSHP+T +I+ KL +M  KL+ AG+VP+T  QVL        C+E  +E E 
Sbjct: 497 LHRFIAGDKSHPRTADIYMKLDDMICKLRLAGYVPNTNCQVLFGCSNGDDCMEAFEEVEQ 556

Query: 617 ELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFH 676
            L  HSE+LA+ FGL++  S SP+ I KNLR+C DCHS  K+ S IY REI+VRD  RFH
Sbjct: 557 VLFTHSEKLALCFGLMSTPSSSPLCIFKNLRICQDCHSAIKIASDIYKREIVVRDRYRFH 616

Query: 677 HFKNGSCSCKDFW 689
            FK GSCSC D+W
Sbjct: 617 SFKQGSCSCSDYW 629



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 115/466 (24%), Positives = 202/466 (43%), Gaps = 96/466 (20%)

Query: 31  SSTHKETQQLHALSVKTNLIYH--SGISSRLLSLYVDPHINNLHYARSIFDRILQ-HPSL 87
           +S  +  +QLHA +  + L++   S + + LL LY    + +  +AR +FDRI   H   
Sbjct: 25  ASAVRPGEQLHAAATVSGLLFSPSSFLLNALLHLYASCPLPS--HARKLFDRIPHSHKDS 82

Query: 88  VLYNLLIKCYVFNQRSH--EALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIH 145
           V Y  LI+C      SH  +AL  +  +  R L  D   L C +   ++LG      Q+H
Sbjct: 83  VDYTALIRC------SHPLDALRFYLQMRQRALPLDGVALICALGACSKLGDSNLVPQMH 136

Query: 146 GLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVE 205
             V K GF     VL+ ++  Y K G +   RRVF+ +++  +VSW  +++G VK   VE
Sbjct: 137 VGVVKFGFLRHTKVLNGVMDGYVKCGLVGEARRVFEEIEEPSVVSWTVVLEGVVKCEGVE 196

Query: 206 VAMKLFDEMPDRDLFSWTCLVDGF------------------------------------ 229
               +FDEMP+R+  +WT L+ G+                                    
Sbjct: 197 SGKVVFDEMPERNEVAWTVLIKGYVGSGFTKEAFLLLKEMVFGCGFGFGLNSITLCSVLS 256

Query: 230 --SKCGKVEIAREIF-YRMPNRNLVSWN-------AMINGYMKAGDVDSACELFDDMEIR 279
             S+ G V + R +  Y +     V W+       ++++ Y K G + +A  +F  M  R
Sbjct: 257 ACSQSGDVSVGRWVHCYAV---KAVGWDLGVMVGTSLVDMYAKCGRISAALMVFRHMPRR 313

Query: 280 DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMH 339
           +++ WN+M+ G  ++G     +E+   M + +V P+  T ++ LS+ +           H
Sbjct: 314 NVVAWNAMLCGLAMHGMGKVVVEMFACM-VEEVKPDAVTFMALLSSCS-----------H 361

Query: 340 SYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMAT 399
           S +V+ G+           Q +     +E A  +     + ++ H+  M+  LG  G   
Sbjct: 362 SGLVEQGW-----------QYFH---DLERAYGI-----RPEIEHYACMVDLLGRAGRLE 402

Query: 400 QALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN 445
           +A DL  K   + + P  +    +L AC   G +  G +    ++ 
Sbjct: 403 EAEDLVKK---LPIPPNEVVLGSLLGACYAHGKLRLGEKIMRELVQ 445


>gi|359495864|ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Vitis vinifera]
          Length = 751

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 240/649 (36%), Positives = 366/649 (56%), Gaps = 15/649 (2%)

Query: 51  YHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLF 110
           +H  + ++L+  Y+     ++ YAR +FD +  H  +V +N +I  Y+ N RS EA+ ++
Sbjct: 108 FHHSLGNKLIDAYLK--CGSVVYARKVFDEV-PHRHIVAWNSMIASYIRNGRSKEAIDIY 164

Query: 111 CDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK-FVLSSLVSMYAK 169
             ++   +LPD FT   V K  + LG + EG++ HG    LG G    FV S+LV MYAK
Sbjct: 165 QRMVPDGILPDEFTFSSVFKAFSDLGLVHEGQRAHGQSVVLGVGVSNVFVGSALVDMYAK 224

Query: 170 FGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL-FSWTCLVDG 228
           FG++   R V D +  KD+V +  LI GY   GE   ++++F  M  + +  +   L   
Sbjct: 225 FGKMRDARLVSDQVVGKDVVLFTALIVGYSHHGEDGESLQVFRNMTKKGIEANEYTLSSV 284

Query: 229 FSKCGKVE-------IAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDL 281
              CG +E       I   I        + S  +++  Y + G VD + ++F      + 
Sbjct: 285 LVCCGNLEDLTSGRLIHGLIVKAGLESAVASQTSLLTMYYRCGLVDDSLKVFKQFINPNQ 344

Query: 282 ITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSY 341
           +TW S+I G   NGR   AL     ML   + PN  TL S L A + LA+L +G+ +H+ 
Sbjct: 345 VTWTSVIVGLVQNGREEIALLKFRQMLRSSITPNSFTLSSVLRACSSLAMLEQGKQIHAI 404

Query: 342 IVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQA 401
           ++K G  +D  +G  LI  Y KCGS E A +VF  + +  V    +MI     +G   +A
Sbjct: 405 VMKFGLDIDKYVGAALIDFYGKCGSTEIARSVFNGLLEVDVVSVNSMIYSYAQNGFGHEA 464

Query: 402 LDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVD 461
           L LF+ M   G++P  +T++GVL+AC++AGL+ +G   F+   N   IE T +HY C+VD
Sbjct: 465 LQLFSGMKDTGLEPNNVTWLGVLSACNNAGLLEEGCHIFSSARNSGNIELTKDHYACMVD 524

Query: 462 ILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGC 521
           +L R G L+EA+  I  + +  + VIW +LLS  R HG+ ++ +   N +I +AP+  G 
Sbjct: 525 LLGRAGRLKEAEMLINQVNI-SDVVIWRTLLSACRIHGDVEMAKRVMNRVIDLAPEDGGT 583

Query: 522 YVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEI 581
           +V+LSN+YA+ G W KV E++  M++   +K+P  S ++    +H F+ GD SHP   +I
Sbjct: 584 HVLLSNLYASTGNWSKVIEMKSAMREMRLKKNPAMSWVDVEREIHTFMAGDWSHPNFRDI 643

Query: 582 HSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSR-SPI 640
             KL E+  K+K  G+VPDT  VL  ++++K K   L  HSE+LA+AF L     + + I
Sbjct: 644 REKLEELIEKVKELGYVPDTRFVLQDLDEEK-KIRSLYYHSEKLAVAFALWRSNYKNTTI 702

Query: 641 RIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           RI+KNLRVC DCH+  K +S I  R+II RD  RFHHF+NG CSC D+W
Sbjct: 703 RILKNLRVCGDCHTWMKFVSKIVGRDIIARDVKRFHHFRNGLCSCGDYW 751



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 105/388 (27%), Positives = 175/388 (45%), Gaps = 42/388 (10%)

Query: 154 GFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDE 213
           GF   + + L+  Y K G +   R+VFD +  + +V+WN +I  Y++ G  + A+ ++  
Sbjct: 107 GFHHSLGNKLIDAYLKCGSVVYARKVFDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQR 166

Query: 214 M-PD---RDLFSWTCLVDGFSKCGKVEIARE-----IFYRMPNRNLVSWNAMINGYMKAG 264
           M PD    D F+++ +   FS  G V   +      +   +   N+   +A+++ Y K G
Sbjct: 167 MVPDGILPDEFTFSSVFKAFSDLGLVHEGQRAHGQSVVLGVGVSNVFVGSALVDMYAKFG 226

Query: 265 DVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS 324
            +  A  + D +  +D++ + ++I GY  +G   E+L++   M    +  N+ TL S L 
Sbjct: 227 KMRDARLVSDQVVGKDVVLFTALIVGYSHHGEDGESLQVFRNMTKKGIEANEYTLSSVLV 286

Query: 325 AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGH 384
               L  L  GR +H  IVK G        T L+ MY +CG ++ +L VF+         
Sbjct: 287 CCGNLEDLTSGRLIHGLIVKAGLESAVASQTSLLTMYYRCGLVDDSLKVFKQFINPNQVT 346

Query: 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRY----- 439
           WT++IVGL  +G    AL  F +M R  + P + T   VL ACS   ++  G++      
Sbjct: 347 WTSVIVGLVQNGREEIALLKFRQMLRSSITPNSFTLSSVLRACSSLAMLEQGKQIHAIVM 406

Query: 440 -FNMMINDYGIEPTIEHYG-CLVDILCRT---GYLEEAKSTIESM--------------- 479
            F + I+ Y     I+ YG C    + R+   G LE    ++ SM               
Sbjct: 407 KFGLDIDKYVGAALIDFYGKCGSTEIARSVFNGLLEVDVVSVNSMIYSYAQNGFGHEALQ 466

Query: 480 --------PMRPNFVIWMSLLSGARNHG 499
                    + PN V W+ +LS   N G
Sbjct: 467 LFSGMKDTGLEPNNVTWLGVLSACNNAG 494


>gi|449457327|ref|XP_004146400.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 231/632 (36%), Positives = 352/632 (55%), Gaps = 20/632 (3%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           A  +FD + Q P  V YN LI  Y     +  A  LF ++ + FL  D FTL  +I    
Sbjct: 93  AHQLFDEMPQ-PDSVSYNTLIAAYARRGDTQPAFQLFLEMREAFLDMDGFTLSGIITACG 151

Query: 134 -RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAM-DDKDLVSW 191
             +G I+   Q+H L    G      V ++L++ Y+K G +   RR+F  + +D+D VSW
Sbjct: 152 INVGLIR---QLHALSVVTGLDSYVSVGNALITSYSKNGFLKEARRIFHWLSEDRDEVSW 208

Query: 192 NCLIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKC----GKVEIAREIFY 243
           N ++  Y++  E   A++L+ EM  R    D+F+   ++  F+      G ++   ++  
Sbjct: 209 NSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQFHAKLIK 268

Query: 244 RMPNRNLVSWNAMINGYMKAGDVDSAC-ELFDDMEIRDLITWNSMIAGYELNGRFM-EAL 301
              ++N    + +I+ Y K G     C ++FD++   DL+ WN+MI+GY L      EAL
Sbjct: 269 SGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYEDLSDEAL 328

Query: 302 ELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV-LGTLLIQM 360
           E    + +    P+D +LV  +SA + ++  ++GR +H   +K     + + +   LI M
Sbjct: 329 ECFRQLQVVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKLDIPSNRISVNNALIAM 388

Query: 361 YSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITF 420
           YSKCG++  A T+F  + +     + +MI G   HGM  Q+L LF +M  MG  PT ITF
Sbjct: 389 YSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMGFTPTNITF 448

Query: 421 IGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP 480
           I VL AC+H G V DG+ YFNMM   +GIEP   H+ C++D+L R G L EA+  IE++P
Sbjct: 449 ISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRAGKLSEAERLIETIP 508

Query: 481 MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSE 540
             P F  W +LL   R HGN ++   AAN L+++ P     YV+L+NIY+  G+    + 
Sbjct: 509 FDPGFFFWSALLGACRIHGNVELAIKAANRLLQLDPLNAAPYVMLANIYSDNGRLQDAAS 568

Query: 541 VREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPD 600
           VR++M+ RG +K PG S IE    +H FV  D  HP   +I   L EM  K+K  G+ P+
Sbjct: 569 VRKLMRDRGVKKKPGCSWIEVNRRIHIFVAEDTFHPMIKKIQEYLEEMMRKIKKVGYTPE 628

Query: 601 TTQVLLCIED---QKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTK 657
               L+  +D   Q+E+E  L +HSE+LA++FGL++ +   PI + KNLR+C DCH+  K
Sbjct: 629 VRSALVGGDDRVWQREEELRLGHHSEKLAVSFGLMSTREGEPILVFKNLRICVDCHNAIK 688

Query: 658 LLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            +S +  REI VRD+ RFH FK+G CSC  +W
Sbjct: 689 YISEVVKREITVRDSHRFHCFKDGQCSCGGYW 720



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 110/402 (27%), Positives = 190/402 (47%), Gaps = 41/402 (10%)

Query: 138 IKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDG 197
           ++ GK +H L  K       ++ +  + +Y+K   +   RRVFD   D ++ S+N LI  
Sbjct: 24  LRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHTHDCNVFSFNTLISA 83

Query: 198 YVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMP----------- 246
           Y K+  VEVA +LFDEMP  D  S+  L+  +++ G  + A ++F  M            
Sbjct: 84  YAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMREAFLDMDGFTL 143

Query: 247 ---------NRNLVSW-----------------NAMINGYMKAGDVDSACELFDDM-EIR 279
                    N  L+                   NA+I  Y K G +  A  +F  + E R
Sbjct: 144 SGIITACGINVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFLKEARRIFHWLSEDR 203

Query: 280 DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMH 339
           D ++WNSM+  Y  +    +ALEL   M +  ++ +  TL S L+A   +  L  G   H
Sbjct: 204 DEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQFH 263

Query: 340 SYIVKNGFVVDGVLGTLLIQMYSKCGS-IESALTVFRAISKKKVGHWTAMIVGLGMH-GM 397
           + ++K+G+  +  +G+ LI +YSKCG  +     VF  IS   +  W  MI G  ++  +
Sbjct: 264 AKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYEDL 323

Query: 398 ATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYG 457
           + +AL+ F ++  +G +P   + + V++ACS+    + GR+   + +        I    
Sbjct: 324 SDEALECFRQLQVVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKLDIPSNRISVNN 383

Query: 458 CLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
            L+ +  + G L +AK+  ++MP   N V + S+++G   HG
Sbjct: 384 ALIAMYSKCGNLRDAKTLFDTMP-EHNTVSYNSMIAGYAQHG 424



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 113/428 (26%), Positives = 203/428 (47%), Gaps = 21/428 (4%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +QLHALSV T L  +  + + L++ Y       L  AR IF  + +    V +N ++  Y
Sbjct: 158 RQLHALSVVTGLDSYVSVGNALITSYSKNGF--LKEARRIFHWLSEDRDEVSWNSMVVAY 215

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
           + ++   +AL L+ ++  R L+ D FTL  V+     +  +  G Q H  + K G+  + 
Sbjct: 216 MQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNS 275

Query: 158 FVLSSLVSMYAKFGEIDLG-RRVFDAMDDKDLVSWNCLIDGYVKKGEV-EVAMKLFDEMP 215
            V S L+ +Y+K G   L  R+VFD + + DLV WN +I GY    ++ + A++ F ++ 
Sbjct: 276 HVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQ 335

Query: 216 ----DRDLFSWTCLVDGFSKCGKVEIAREIF-----YRMPNRNLVSWNAMINGYMKAGDV 266
                 D  S  C++   S        R++        +P+  +   NA+I  Y K G++
Sbjct: 336 VVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNL 395

Query: 267 DSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326
             A  LFD M   + +++NSMIAGY  +G   ++L L + ML     P + T +S L+A 
Sbjct: 396 RDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMGFTPTNITFISVLAAC 455

Query: 327 AGLAVLNKGRWMHSYIVKNGFVVDGVLG--TLLIQMYSKCGSIESALTVFRAIS-KKKVG 383
           A    +  G+ ++  ++K  F ++   G  + +I +  + G +  A  +   I       
Sbjct: 456 AHTGRVEDGK-IYFNMMKQKFGIEPEAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFF 514

Query: 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKP-TAITFIGVLNACSHAGLVNDGRRYFNM 442
            W+A++    +HG    A+   N++  + + P  A  ++ + N  S  G + D      +
Sbjct: 515 FWSALLGACRIHGNVELAIKAANRL--LQLDPLNAAPYVMLANIYSDNGRLQDAASVRKL 572

Query: 443 MINDYGIE 450
           M  D G++
Sbjct: 573 M-RDRGVK 579


>gi|449435366|ref|XP_004135466.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 221/566 (39%), Positives = 332/566 (58%), Gaps = 20/566 (3%)

Query: 142 KQIHGLVFK-LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYV- 199
           KQIH    +          L S +   +   + D   RVF+ +D+ +   WN LI     
Sbjct: 42  KQIHAQAIRNFSTHNSSLFLYSRILHVSSLIDFDYACRVFNQIDNPNSFMWNTLIGACAR 101

Query: 200 ----KKGEVEVAMKLFDE---MPDRDLFSWTCLVDG--FSKCGKVEIAREIFYRMPNRNL 250
               K+  +E+  ++ +E    PD+  F +        F+     +   +IF    + ++
Sbjct: 102 SLDRKEQAIEIFYRMLEEGSVEPDKHTFPFLLKACAYVFALSEGRQAHAQIFKLGLDLDV 161

Query: 251 VSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIG 310
              N++I+ Y   G +  A ++F+ M +R L++WN MI  Y  +G F  AL+L   M   
Sbjct: 162 YVGNSLIHLYASCGCLSMALKVFEKMPLRSLVSWNVMIDAYVQSGLFENALKLFVEMQ-N 220

Query: 311 DVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNG---FVVDGVLGTLLIQMYSKCGSI 367
              P+  T+ S +SA AG+  L+ G W H+Y+++        D ++ + L+ MYSKCGS+
Sbjct: 221 SFEPDGYTMQSIVSACAGIGALSLGMWAHAYVLRKASGAMAGDVLINSSLVDMYSKCGSL 280

Query: 368 ESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRM-GMKPTAITFIGVLNA 426
             A  VF  + K  +  W +MI+ L MHG    AL  F+++  M    P ++TF+GVL+A
Sbjct: 281 RMAQQVFETMPKHDLNSWNSMILALAMHGRGQAALQCFSRLVEMEKFLPNSVTFVGVLSA 340

Query: 427 CSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFV 486
           C+H G+V DGR+YF+MM+NDY IEP +EHYGCLVD+L R+G+++EA   + +M ++P+ V
Sbjct: 341 CNHGGMVADGRKYFDMMVNDYKIEPRLEHYGCLVDLLSRSGFIDEALELVANMHIKPDAV 400

Query: 487 IWMSLLSGA-RNHGNKDIGEYAANNLIKVAPDTI--GCYVVLSNIYAAAGQWDKVSEVRE 543
           IW SLL    + +   ++ E  A  +++ +  TI  G YV+LS +YA+A QW+ V  +R+
Sbjct: 401 IWRSLLDACYKQNAGVELSEEVAFKILQ-SEKTISSGVYVMLSRVYASARQWNDVGIIRK 459

Query: 544 MMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQ 603
           +M   G  K+PG SSIE  G+ HEF  GD SHP+  EI+  +  +  KL+  G+ PD +Q
Sbjct: 460 VMTDMGVTKEPGCSSIEIDGISHEFFAGDTSHPRIKEIYGVIDLIEEKLERRGYSPDCSQ 519

Query: 604 VLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIY 663
             +  E    K+  L+ HSERLAIAFGL+N+K  +P+RI KNLRVCNDCH VTKL+S I+
Sbjct: 520 ATMVDEPDNIKQQSLKLHSERLAIAFGLLNLKPGTPVRIFKNLRVCNDCHQVTKLISEIF 579

Query: 664 NREIIVRDNSRFHHFKNGSCSCKDFW 689
           N EII+RD +RFHHFK+G CSC DFW
Sbjct: 580 NVEIIMRDRNRFHHFKHGMCSCMDFW 605



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 112/434 (25%), Positives = 187/434 (43%), Gaps = 110/434 (25%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI-KC 96
           +Q+HA +++    ++S +      L+V   I+   YA  +F++I  +P+  ++N LI  C
Sbjct: 42  KQIHAQAIRNFSTHNSSLFLYSRILHVSSLID-FDYACRVFNQI-DNPNSFMWNTLIGAC 99

Query: 97  YVFNQRSHEALTLFCDLLDR-FLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF 155
                R  +A+ +F  +L+   + PD  T P ++K  A + A+ EG+Q H  +FKLG   
Sbjct: 100 ARSLDRKEQAIEIFYRMLEEGSVEPDKHTFPFLLKACAYVFALSEGRQAHAQIFKLGLDL 159

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM- 214
           D +V +SL+ +YA  G + +  +VF+ M  + LVSWN +ID YV+ G  E A+KLF EM 
Sbjct: 160 DVYVGNSLIHLYASCGCLSMALKVFEKMPLRSLVSWNVMIDAYVQSGLFENALKLFVEMQ 219

Query: 215 ----PD------------------------------------RDLFSWTCLVDGFSKCGK 234
               PD                                     D+   + LVD +SKCG 
Sbjct: 220 NSFEPDGYTMQSIVSACAGIGALSLGMWAHAYVLRKASGAMAGDVLINSSLVDMYSKCGS 279

Query: 235 VEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELN 294
           + +A+++F  MP  +L SW                               NSMI    ++
Sbjct: 280 LRMAQQVFETMPKHDLNSW-------------------------------NSMILALAMH 308

Query: 295 GRFMEALELLETML-IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVL 353
           GR   AL+    ++ +   LPN  T V  LSA     ++  GR     +V N + ++   
Sbjct: 309 GRGQAALQCFSRLVEMEKFLPNSVTFVGVLSACNHGGMVADGRKYFDMMV-NDYKIE--- 364

Query: 354 GTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGM 413
                                      ++ H+  ++  L   G   +AL+L   +  M +
Sbjct: 365 --------------------------PRLEHYGCLVDLLSRSGFIDEALEL---VANMHI 395

Query: 414 KPTAITFIGVLNAC 427
           KP A+ +  +L+AC
Sbjct: 396 KPDAVIWRSLLDAC 409


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 225/626 (35%), Positives = 337/626 (53%), Gaps = 75/626 (11%)

Query: 105 EALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLV 164
           +AL+L+  +L     P+ FT P  +K  A L     G Q HG + K+G  F+ FV + L+
Sbjct: 23  QALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQITKVGCVFEPFVQTGLI 82

Query: 165 SMYAKFGEIDLGRRVFDA--MDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP------- 215
           SMY K   +D  R+VF+      K  V +N L+ GYV   +   A+ LF +M        
Sbjct: 83  SMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDAVLLFRQMNEEGVPVN 142

Query: 216 --------------------------------DRDLFSWTCLVDGFSKCGKVEIAREIFY 243
                                           D D+    C +  + KCG V  A+++F 
Sbjct: 143 SVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFD 202

Query: 244 RMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALEL 303
            MP + L+SWNAM++GY + G   +  EL+ +M               ++NG        
Sbjct: 203 EMPVKGLISWNAMVSGYAQNGLATNVLELYRNM---------------DMNG-------- 239

Query: 304 LETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSK 363
                   V P+  TLV  LS+ A L   + G  +   +  +GF  +  L   LI MY++
Sbjct: 240 --------VHPDPVTLVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNNALINMYAR 291

Query: 364 CGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGV 423
           CG++  A  VF  + ++ +  WTA+I G GMHG    A+ LF +M R G++P    F+ V
Sbjct: 292 CGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCV 351

Query: 424 LNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRP 483
           L+ACSHAGL + G  YF MM  +Y +EP  EHY C+VD+L R G L+EA++ IESMP++P
Sbjct: 352 LSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKP 411

Query: 484 NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVRE 543
           +  +W +LL   + H N ++ E A   +I++ P+ IG YV+LSNIY+ A     V  +R 
Sbjct: 412 DGAVWGALLGACKIHKNVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRI 471

Query: 544 MMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQ 603
           MMK++  +KDPG S +E +G +H F+VGD++H Q+DEI+  L E+   +      P+   
Sbjct: 472 MMKEKKLKKDPGCSYVELKGRVHPFIVGDRNHLQSDEIYRVLEELEAIIMQEFGKPEKDN 531

Query: 604 VLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIY 663
                E  K+    +  HSE+LA+AFGL+N  + + + I+KNLR+C DCH   K++S I 
Sbjct: 532 RE---ESNKDGFTRVGVHSEKLAVAFGLLNTTTGAEVVIIKNLRICEDCHLFFKMVSKIV 588

Query: 664 NREIIVRDNSRFHHFKNGSCSCKDFW 689
           +R++ VRD +RFHHF+NGSCSCKD+W
Sbjct: 589 HRQLTVRDATRFHHFRNGSCSCKDYW 614



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 93/373 (24%), Positives = 173/373 (46%), Gaps = 23/373 (6%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSL-VLYNLLIKCY 97
           Q H    K   ++   + + L+S+Y    +  +  AR +F+       L V YN L+  Y
Sbjct: 61  QFHGQITKVGCVFEPFVQTGLISMYCKGSL--VDNARKVFEENFHSRKLTVCYNALVSGY 118

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
           V N +  +A+ LF  + +  +  ++ TL  +I        ++ G  +H    K GF  D 
Sbjct: 119 VSNSKCSDAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDV 178

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM--- 214
            V++  ++MY K G ++  +++FD M  K L+SWN ++ GY + G     ++L+  M   
Sbjct: 179 SVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMN 238

Query: 215 ---PDRDLFSWTCLVDGFSKC---GKVEIAREIFYRMPNRNLVS----WNAMINGYMKAG 264
              PD        LV   S C   G   +  E+ ++M      S     NA+IN Y + G
Sbjct: 239 GVHPDP-----VTLVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNNALINMYARCG 293

Query: 265 DVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS 324
           ++  A  +FD M  R L++W ++I GY ++G    A++L + M+   + P+    V  LS
Sbjct: 294 NLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLS 353

Query: 325 AVAGLAVLNKGRWMHSYIVKNGFVVDGVLG-TLLIQMYSKCGSIESALTVFRAISKKKVG 383
           A +   + ++G      + +N  +  G    + ++ +  + G ++ A T+  ++  K  G
Sbjct: 354 ACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDG 413

Query: 384 H-WTAMIVGLGMH 395
             W A++    +H
Sbjct: 414 AVWGALLGACKIH 426



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 124/275 (45%), Gaps = 7/275 (2%)

Query: 284 WNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIV 343
           WN+ +       +F++AL L   ML     PN  T   AL + A L++   G   H  I 
Sbjct: 8   WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 67

Query: 344 KNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAI--SKKKVGHWTAMIVGLGMHGMATQA 401
           K G V +  + T LI MY K   +++A  VF     S+K    + A++ G   +   + A
Sbjct: 68  KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDA 127

Query: 402 LDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVD 461
           + LF +M   G+   ++T +G++ AC     +  G       +  YG +  +    C + 
Sbjct: 128 VLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTL-KYGFDSDVSVVNCFIT 186

Query: 462 ILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG-ARNHGNKDIGEYAAN-NLIKVAPDTI 519
           +  + G +  A+   + MP++   + W +++SG A+N    ++ E   N ++  V PD +
Sbjct: 187 MYMKCGSVNYAQKLFDEMPVK-GLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPV 245

Query: 520 GCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDP 554
               VLS+  A  G      EV   M+  GF  +P
Sbjct: 246 TLVGVLSSC-ANLGAQSVGHEVEFKMQASGFTSNP 279


>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 247/668 (36%), Positives = 374/668 (55%), Gaps = 40/668 (5%)

Query: 41  HALSVKTNLIYHSGISSRLLSLYV--DPHINNLHYARSIFDRILQHPSLVLYNLLIKCYV 98
           HA S +++L Y+S +SSR+   +V  +P  N ++  +   ++++Q  SL        C  
Sbjct: 12  HAPS-QSHLCYNSHVSSRVPVSFVSLNPSANLMNDIKGNNNQLIQ--SL--------CKG 60

Query: 99  FNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKF 158
            N +  +A+ L C   +    P   T   +I   A+  ++ +G  +H  +   GF  D F
Sbjct: 61  GNLK--QAIHLLCCEPN----PTQRTFEHLICSCAQQNSLSDGLDVHRRLVSSGFDQDPF 114

Query: 159 VLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP--- 215
           + + L++MY + G ID  R+VFD   ++ +  WN L       G  +  + L+ +M    
Sbjct: 115 LATKLINMYYELGSIDRARKVFDETRERTIYVWNALFRALAMVGCGKELLDLYVQMNWIG 174

Query: 216 -DRDLFSWT-----CLVDGFS----KCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGD 265
              D F++T     C+V   S    + GK EI   I       N+     +++ Y K G 
Sbjct: 175 IPSDRFTYTFVLKACVVSELSVSPLQKGK-EIHAHILRHGYEANIHVMTTLLDVYAKFGS 233

Query: 266 VDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIG--DVLPNDATLVSAL 323
           V  A  +F  M  ++ ++W++MIA +  N   M+ALEL + M++   D +PN  T+V+ L
Sbjct: 234 VSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMLEAHDSVPNSVTMVNVL 293

Query: 324 SAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTL--LIQMYSKCGSIESALTVFRAISKKK 381
            A AGLA L +G+ +H YI++ G  +D +L  L  LI MY +CG I     VF  +  + 
Sbjct: 294 QACAGLAALEQGKLIHGYILRRG--LDSILPVLNALITMYGRCGEILMGQRVFDNMKNRD 351

Query: 382 VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFN 441
           V  W ++I   GMHG   +A+ +F  M   G  P+ I+FI VL ACSHAGLV +G+  F 
Sbjct: 352 VVSWNSLISIYGMHGFGKKAIQIFENMIHQGSSPSYISFITVLGACSHAGLVEEGKILFE 411

Query: 442 MMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNK 501
            M++ Y I P +EHY C+VD+L R   L+EA   IE M   P   +W SLL   R H N 
Sbjct: 412 SMLSKYRIHPGMEHYACMVDLLGRANRLDEAIKLIEDMHFEPGPTVWGSLLGSCRIHCNV 471

Query: 502 DIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEH 561
           ++ E A+  L ++ P   G YV+L++IYA A  W +   V ++++ RG +K PG S IE 
Sbjct: 472 ELAERASTLLFELEPRNAGNYVLLADIYAEAKMWSEAKSVMKLLEARGLQKLPGCSWIEV 531

Query: 562 RGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENH 621
           +  ++ FV  D+ +PQ +EIH+ L ++ N++KA G+VP T  VL  + D++EKE  +  H
Sbjct: 532 KRKVYSFVSVDEHNPQIEEIHALLVKLSNEMKAQGYVPQTNVVLYDL-DEEEKERIVLGH 590

Query: 622 SERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNG 681
           SE+LA+AFGLIN      IRI KNLR+C DCH+VTK +S   NREI+VRD +RFHHFK+G
Sbjct: 591 SEKLAVAFGLINTVKGETIRIRKNLRLCEDCHAVTKFISKFANREILVRDVNRFHHFKDG 650

Query: 682 SCSCKDFW 689
            CSC D+W
Sbjct: 651 VCSCGDYW 658


>gi|449523810|ref|XP_004168916.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g01510-like [Cucumis
           sativus]
          Length = 816

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 223/660 (33%), Positives = 361/660 (54%), Gaps = 13/660 (1%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYV 98
           Q+H   +K    Y+  + + L+  Y   H   L+ A  +F  +L   + V +N L+  Y 
Sbjct: 161 QIHTHVIKLGYEYNLMVCNSLVDAYCKTHC--LYLASQLFKHMLNKDT-VTFNSLMTGYS 217

Query: 99  FNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKF 158
               + EA+ LF +L +  + P +FT   ++  A  L   K G+Q+HG V K  F ++ F
Sbjct: 218 NEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVF 277

Query: 159 VLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP--- 215
           V ++L+  Y+K  ++D   ++F  M + D +S+N +I  Y   G+ + +  LF ++    
Sbjct: 278 VGNALLDYYSKHDQVDEVGKLFXEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTR 337

Query: 216 -DRDLFSWTCLVDGFSKCGKVEIAREIFYRM----PNRNLVSWNAMINGYMKAGDVDSAC 270
            DR  F +  L+   +    + + R+I  +      N      NA+++ Y K      A 
Sbjct: 338 FDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQ 397

Query: 271 ELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLA 330
           ++FD++  +  + W +MI+ Y   G+  E + +   M    V  + AT  S L A A LA
Sbjct: 398 KIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLA 457

Query: 331 VLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIV 390
            ++ GR +HS ++++GF+ +   G+ L+  Y+KCG +  A+  F  + ++    W A+I 
Sbjct: 458 SISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNSVSWNALIS 517

Query: 391 GLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIE 450
               +G     L+ F +M + G KP +++F+ VL+ACSH G V +   +FN M   Y + 
Sbjct: 518 AYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLSACSHCGFVEEALWHFNSMTQIYEVT 577

Query: 451 PTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANN 510
           P  EHY  +VD+LCR G  +EA+  +  MP  P+ ++W S+L+  R H N ++ + AA+ 
Sbjct: 578 PKREHYTSMVDVLCRNGRFDEAEKLMTEMPFEPSEIMWSSVLNSCRIHKNHELAKKAADR 637

Query: 511 LIKVAP-DTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFV 569
           L  +        Y+ +SNIYA AGQWD V++V++ M+ RG RK P  S +E +   H F 
Sbjct: 638 LFNMEDLRDAAPYINMSNIYAVAGQWDNVAKVKKAMRDRGVRKVPAYSWVEIKHQTHVFS 697

Query: 570 VGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAF 629
             DKSHP+  +I  K++ +  +++  G+ PDTT  L  + D+  K   L+ HSER AIAF
Sbjct: 698 ANDKSHPEMKKILRKINALSKEMEKKGYKPDTTCALHDV-DEVIKIESLKYHSERFAIAF 756

Query: 630 GLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            L+N    SPI ++KNLR C DCH+  K++S I  REIIVRD+SRFHHFK+G CSC D+W
Sbjct: 757 ALMNTPDGSPIVVMKNLRACTDCHAAIKVISQIVEREIIVRDSSRFHHFKDGVCSCGDYW 816



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 135/508 (26%), Positives = 238/508 (46%), Gaps = 23/508 (4%)

Query: 60  LSLYVDPHIN--NLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRF 117
           L++ +  H+    L  AR +FD +++  + V + +LI  Y+ + +S EA  L+ D+    
Sbjct: 77  LNMMISGHLKFGKLSKARELFDGMVERTA-VSWTILIGGYLQSNQSKEAFRLYADMRRGG 135

Query: 118 LLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGR 177
           + PD  TL  ++ G   L       QIH  V KLG+ ++  V +SLV  Y K   + L  
Sbjct: 136 IEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLAS 195

Query: 178 RVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCG 233
           ++F  M +KD V++N L+ GY  +G  E A++LF E+ +  +    F++  L+       
Sbjct: 196 QLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLD 255

Query: 234 KVEIAREIFYRMPNRNLVSW-----NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMI 288
             +  +++   +   N V W     NA+++ Y K   VD   +LF +M   D I++N +I
Sbjct: 256 DTKFGQQVHGFVLKTNFV-WNVFVGNALLDYYSKHDQVDEVGKLFXEMPELDGISYNVVI 314

Query: 289 AGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFV 348
             Y  NG+F E+ +L   +             + LS       L  GR +H   +  G  
Sbjct: 315 TSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGAN 374

Query: 349 VDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKM 408
            +  +   L+ MY+KC   + A  +F  I+ K    WTAMI      G   + +++F+ M
Sbjct: 375 FESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDM 434

Query: 409 CRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGY 468
            R G+     TF  +L AC++   ++ GR+  +++I   G    +     L+D   + G 
Sbjct: 435 RRTGVPADQATFASILRACANLASISLGRQLHSLLIRS-GFMSNVYSGSALLDTYAKCGC 493

Query: 469 LEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVA--PDTIGCYVVLS 526
           + +A  +   MP R N V W +L+S    +GN D    +   +I+    PD++    VLS
Sbjct: 494 MTDAIKSFGEMPER-NSVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLS 552

Query: 527 N------IYAAAGQWDKVSEVREMMKKR 548
                  +  A   ++ ++++ E+  KR
Sbjct: 553 ACSHCGFVEEALWHFNSMTQIYEVTPKR 580



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 93/401 (23%), Positives = 175/401 (43%), Gaps = 43/401 (10%)

Query: 144 IHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGE 203
           I   + K GF  +    +  V+ + + G++    +VFD M  K+ +S N +I G++K G+
Sbjct: 30  IDAHIVKTGFNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGK 89

Query: 204 VEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM------PN---------- 247
           +  A +LFD M +R   SWT L+ G+ +  + + A  ++  M      P+          
Sbjct: 90  LSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSG 149

Query: 248 -----------------------RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITW 284
                                   NL+  N++++ Y K   +  A +LF  M  +D +T+
Sbjct: 150 FGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTF 209

Query: 285 NSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVK 344
           NS++ GY   G   EA+EL   +    + P+D T  + LSA  GL     G+ +H +++K
Sbjct: 210 NSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLK 269

Query: 345 NGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDL 404
             FV +  +G  L+  YSK   ++    +F  + +     +  +I     +G   ++ DL
Sbjct: 270 TNFVWNVFVGNALLDYYSKHDQVDEVGKLFXEMPELDGISYNVVITSYAWNGQFKESFDL 329

Query: 405 FNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN-DYGIEPTIEHYGCLVDIL 463
           F K+           F  +L+  + +  +  GR+     I      E  +E+   LVD+ 
Sbjct: 330 FRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVEN--ALVDMY 387

Query: 464 CRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIG 504
            +    +EA+   +++  +   V W +++S     G  + G
Sbjct: 388 AKCNGDKEAQKIFDNIACKST-VPWTAMISAYVQKGKHEEG 427



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 110/455 (24%), Positives = 181/455 (39%), Gaps = 124/455 (27%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSL--VLYNLLIK 95
           QQ+H   +KTN +++  + + LL  Y   H + +     +F  +   P L  + YN++I 
Sbjct: 261 QQVHGFVLKTNFVWNVFVGNALLDYY-SKH-DQVDEVGKLFXEM---PELDGISYNVVIT 315

Query: 96  CYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF 155
            Y +N +  E+  LF  L         F    ++  A     ++ G+QIH     +G  F
Sbjct: 316 SYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANF 375

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM- 214
           +  V ++LV MYAK       +++FD +  K  V W  +I  YV+KG+ E  + +F +M 
Sbjct: 376 ESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMR 435

Query: 215 -----PDR---------------------------------DLFSWTCLVDGFSKCGKVE 236
                 D+                                 +++S + L+D ++KCG + 
Sbjct: 436 RTGVPADQATFASILRACANLASISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMT 495

Query: 237 IAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGR 296
            A + F  MP RN VSWNA+I+ Y + G+VD     F  M          + +GY+    
Sbjct: 496 DAIKSFGEMPERNSVSWNALISAYAQNGNVDGTLNSFQQM----------IQSGYK---- 541

Query: 297 FMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTL 356
                            P+  + +S LSA                               
Sbjct: 542 -----------------PDSVSFLSVLSAC------------------------------ 554

Query: 357 LIQMYSKCGSIESALTVFRAISK-----KKVGHWTAMIVGLGMHGMATQALDLFNKMCRM 411
                S CG +E AL  F ++++      K  H+T+M+  L  +G   +A  L   M  M
Sbjct: 555 -----SHCGFVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFDEAEKL---MTEM 606

Query: 412 GMKPTAITFIGVLNAC----SHAGLVNDGRRYFNM 442
             +P+ I +  VLN+C    +H        R FNM
Sbjct: 607 PFEPSEIMWSSVLNSCRIHKNHELAKKAADRLFNM 641


>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 657

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/588 (36%), Positives = 329/588 (55%), Gaps = 23/588 (3%)

Query: 120 PDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRV 179
           P   T   +I       ++ +G ++H  +   G   D F+ + L+ MY+  G +D  R+V
Sbjct: 75  PSQQTYELLILCCGHRSSLSDGLRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKV 134

Query: 180 FDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP----DRDLFSWT----------CL 225
           FD    + +  WN L       G  E  + L+ +M     + D F++T          C 
Sbjct: 135 FDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECT 194

Query: 226 VDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWN 285
            D  +K GK EI   +  R  N ++     +++ Y + G VD A  +F+ M +R++++W+
Sbjct: 195 ADHLTK-GK-EIHAHLTRRGYNSHVYIMTTLVDMYARFGCVDYASYVFNGMPVRNVVSWS 252

Query: 286 SMIAGYELNGRFMEALELLETMLI--GDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIV 343
           +MIA Y  NG+  EAL     M+    D  PN  T+VS L A A LA L +GR +H YI+
Sbjct: 253 AMIACYAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASLAALEQGRLIHGYIL 312

Query: 344 KNGFVVDGVLGTL--LIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQA 401
           + G  +D +L  +  L+ MY +CG ++    VF  +  + V  W ++I   G+HG   +A
Sbjct: 313 RRG--LDSILPVISALVTMYGRCGKLDVGQRVFDRMHDRDVVSWNSLISSYGVHGYGRKA 370

Query: 402 LDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVD 461
           + +F +M   G  PT +TF+ VL ACSH GLV +G+R F  M  D+GI+P +EHY C+VD
Sbjct: 371 IQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFESMWRDHGIKPQVEHYACMVD 430

Query: 462 ILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGC 521
           +L R   L+EA   ++ M   P   +W SLL   R HGN ++ E A+  L  + P   G 
Sbjct: 431 LLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGN 490

Query: 522 YVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEI 581
           YV+L++IYA A  WD+V  V+++++ RG +K PG   +E R  ++ FV  D+ +P  ++I
Sbjct: 491 YVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSMDEFNPLMEQI 550

Query: 582 HSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIR 641
           H+ L ++   +K  G++P T  VL  +E + EKE  +  HSE+LA+AFGLIN     PIR
Sbjct: 551 HAFLVKLAEDMKEKGYIPQTKGVLYELETE-EKERIVLGHSEKLALAFGLINTSKGEPIR 609

Query: 642 IVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           I KNLR+C DCH  TK +S    +EI+VRD +RFH FKNG CSC D+W
Sbjct: 610 ITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 138/270 (51%), Gaps = 15/270 (5%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +++HA   +     H  I + L+ +Y       + YA  +F+ +    ++V ++ +I CY
Sbjct: 202 KEIHAHLTRRGYNSHVYIMTTLVDMYA--RFGCVDYASYVFNGMPVR-NVVSWSAMIACY 258

Query: 98  VFNQRSHEALTLFCDLL--DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF 155
             N ++ EAL  F +++   +   P++ T+  V++  A L A+++G+ IHG + + G   
Sbjct: 259 AKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASLAALEQGRLIHGYILRRGLDS 318

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM- 214
              V+S+LV+MY + G++D+G+RVFD M D+D+VSWN LI  Y   G    A+++F+EM 
Sbjct: 319 ILPVISALVTMYGRCGKLDVGQRVFDRMHDRDVVSWNSLISSYGVHGYGRKAIQIFEEML 378

Query: 215 ---PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS-----WNAMINGYMKAGDV 266
                    ++  ++   S  G VE  + +F  M   + +      +  M++   +A  +
Sbjct: 379 ANGASPTPVTFVSVLGACSHEGLVEEGKRLFESMWRDHGIKPQVEHYACMVDLLGRANRL 438

Query: 267 DSACELFDDMEIRD-LITWNSMIAGYELNG 295
           D A ++  DM        W S++    ++G
Sbjct: 439 DEAAKMVQDMRTEPGPKVWGSLLGSCRIHG 468


>gi|297837569|ref|XP_002886666.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332507|gb|EFH62925.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 608

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 227/578 (39%), Positives = 338/578 (58%), Gaps = 45/578 (7%)

Query: 142 KQIHGLVFKLGFGFDK---FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGY 198
           KQ+H    +  +  +    F+   ++ + + F +++   RVFD++++     WN LI   
Sbjct: 46  KQLHAFTLRTTYPDEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRAC 105

Query: 199 VKK-GEVEVAMKLFDEM-------PDRDLFSWT----CLVDGFSKCGKV--EIAREIFYR 244
                  E A  L+ +M       PD+  F +       + G S+  +V  +I +  F  
Sbjct: 106 AHDVSRKEEAFMLYRKMLERGESAPDKHTFPFVLKACAYIFGLSEGKQVHCQIVKHGF-- 163

Query: 245 MPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELL 304
             + ++   N +I+ Y   G +D A ++FD+M  R L++WNSMI      G +  AL+L 
Sbjct: 164 --SGDVYVNNGLIHFYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRVGEYDSALQLF 221

Query: 305 ETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFV---VDGVLGTLLIQMY 361
             M      P+  T+ S LSA AGL  L+ G W H ++++N  V   +D ++   LI+MY
Sbjct: 222 RDMQ-KSFEPDGYTMQSVLSACAGLGSLSLGTWSHVFLLRNCDVDVAMDVLIKNSLIEMY 280

Query: 362 SKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG--MKPTAIT 419
            KCGS+  A  VF+ + K  +  W AMI+G   HG A +A++ F+ M + G  +KP ++T
Sbjct: 281 CKCGSLRMAEQVFQGMRKHDLASWNAMILGFATHGKAEEAMNCFDCMVKEGKNVKPNSVT 340

Query: 420 FIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM 479
           F+ +L AC+H G+VN GR+YF+MM+ +YGIEP +EHYGC++D+L R GY+ EA   + SM
Sbjct: 341 FVALLIACNHRGMVNKGRQYFDMMVREYGIEPALEHYGCIIDLLARAGYITEAIDMVMSM 400

Query: 480 PMRPNFVIWMSLLSGARNHGNK-DIGEYAANNLIKVAPDT-------IGCYVVLSNIYAA 531
           PM+P+ VIW SLL      G   ++ E  A N+I    D         G YV+LS +YA+
Sbjct: 401 PMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTMEDNQSSNSNCSGAYVLLSRVYAS 460

Query: 532 AGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNK 591
           A +W+ V  VR++M   G RK+PG SSIE  G+ +EF  GD SHPQT +I+ +L  + ++
Sbjct: 461 ANRWNDVGIVRKLMSDHGIRKEPGCSSIEINGISNEFFAGDTSHPQTKQIYQQLKVIDDR 520

Query: 592 LKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCND 651
           L++   + D T       +   KE  L  HSERLAIAFGLI++  ++PIRI KNLRVC+D
Sbjct: 521 LRS---IVDAT-------NDSSKEYSLRLHSERLAIAFGLISLPPQTPIRIFKNLRVCSD 570

Query: 652 CHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           CH VTKL+S ++N EIIVRD  RFHHFK+GSCSC D+W
Sbjct: 571 CHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 608



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 124/443 (27%), Positives = 205/443 (46%), Gaps = 54/443 (12%)

Query: 8   HSSPIHALQQHLPSRLHWNILKFSST---HKETQQLHALSVKTNLIYHSGISSRLLS--- 61
           H  P ++         H  IL  + T     + +QLHA +++T   Y    ++  L    
Sbjct: 13  HIQPANSPSASTAGNHHRRILSLAETCSDMSQLKQLHAFTLRTT--YPDEPATLFLYGKI 70

Query: 62  LYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRF-LLP 120
           L +    ++++YA  +FD I  H S +   L+  C     R  EA  L+  +L+R    P
Sbjct: 71  LQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESAP 130

Query: 121 DNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVF 180
           D  T P V+K  A +  + EGKQ+H  + K GF  D +V + L+  Y   G +DL R+VF
Sbjct: 131 DKHTFPFVLKACAYIFGLSEGKQVHCQIVKHGFSGDVYVNNGLIHFYGSCGCLDLARKVF 190

Query: 181 DAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP---DRDLFSWTCLVDGFSKCGKVEI 237
           D M ++ LVSWN +ID  V+ GE + A++LF +M    + D ++   ++   +  G + +
Sbjct: 191 DEMPERSLVSWNSMIDALVRVGEYDSALQLFRDMQKSFEPDGYTMQSVLSACAGLGSLSL 250

Query: 238 AR-EIFYRMPN------RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAG 290
                 + + N       +++  N++I  Y K G +  A ++F  M   DL +WN+MI G
Sbjct: 251 GTWSHVFLLRNCDVDVAMDVLIKNSLIEMYCKCGSLRMAEQVFQGMRKHDLASWNAMILG 310

Query: 291 YELNGRFMEALELLETMLI--GDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFV 348
           +  +G+  EA+   + M+    +V PN  T V+ L A     ++NKGR     +V+    
Sbjct: 311 FATHGKAEEAMNCFDCMVKEGKNVKPNSVTFVALLIACNHRGMVNKGRQYFDMMVRE--- 367

Query: 349 VDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKM 408
                             IE AL            H+  +I  L   G  T+A+D+   +
Sbjct: 368 ----------------YGIEPALE-----------HYGCIIDLLARAGYITEAIDM---V 397

Query: 409 CRMGMKPTAITFIGVLNACSHAG 431
             M MKP A+ +  +L+AC   G
Sbjct: 398 MSMPMKPDAVIWRSLLDACCKKG 420


>gi|297805648|ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316544|gb|EFH46967.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1111

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 203/466 (43%), Positives = 300/466 (64%), Gaps = 1/466 (0%)

Query: 216 DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDD 275
           D D    T L+  +++ G ++   ++F  +   + V   AM+    + GDV  A +LF+ 
Sbjct: 148 DNDPHVQTGLISLYAELGCLDSCHKVFNSVSYPDFVCRTAMVTACARCGDVAFARKLFEG 207

Query: 276 MEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKG 335
           M  +D I WN+MI+GY   G   EAL L   M +  V  N  +++S LSA   L  L++G
Sbjct: 208 MPEKDPIAWNAMISGYAQVGESREALNLFHLMQLEGVKVNGVSMISVLSACTQLGALDQG 267

Query: 336 RWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMH 395
           RW HSYI +N   +   LGT L+ +Y+KCG ++ A+ VF  + +K V  W++ + GL M+
Sbjct: 268 RWAHSYIERNKIKITVRLGTTLVDLYAKCGDMDKAMEVFWGMEEKNVYTWSSALNGLAMN 327

Query: 396 GMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEH 455
           G   + L LF+ M + G+ P A+TF+ VL  CS  G V++G+++F+ M N++GIEP ++H
Sbjct: 328 GFGEKCLKLFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQKHFDSMRNEFGIEPQLDH 387

Query: 456 YGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVA 515
           YGCLVD+  R G LE+A S I+ MPM+ +  +W SLL  +R + N ++G  A+  ++++ 
Sbjct: 388 YGCLVDLYARAGRLEDAVSIIQQMPMKAHAAVWSSLLHASRMYKNLELGVLASKKMLELE 447

Query: 516 PDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSH 575
               G YV+LSNIYA +  WD VS VR+ MK +G RK PG S +E  G +HEF VGDKSH
Sbjct: 448 TSNHGAYVLLSNIYADSDDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSH 507

Query: 576 PQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVK 635
           P+ +EI +   ++  +L+ AG+  DTT V+  I D++EKE  L  HSE+ AIAFG++++K
Sbjct: 508 PKYNEIDAVWKDISRRLRLAGYKADTTPVMFDI-DEEEKEDALCLHSEKAAIAFGIMSLK 566

Query: 636 SRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNG 681
           +  PIRIVKNLRVC DCH V+ ++S I+NREIIVRD +RFHHFK+G
Sbjct: 567 ADVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDG 612



 Score =  358 bits (919), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 173/436 (39%), Positives = 261/436 (59%)

Query: 254  NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL 313
            NA++N Y K GD+ S+C+LF+D+ +++L++WN+MI  +  NG   E L          + 
Sbjct: 676  NALMNLYGKTGDLISSCKLFEDLSVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSRWVGLK 735

Query: 314  PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTV 373
            P+ AT ++ L     + V+   + +H  I+  GF  +  + T L+ +Y+K G +E + TV
Sbjct: 736  PDQATFLAVLRVCEDIGVVRLSQGIHGLIMFCGFNANTCITTALLDLYAKLGRLEDSSTV 795

Query: 374  FRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLV 433
            F  I+      WTAM+     HG    A+  F  M   G+ P  +TF  +LNACSH+GLV
Sbjct: 796  FLEITSPDSMAWTAMLAAYATHGYGRDAIKHFELMVHYGLSPDHVTFTHLLNACSHSGLV 855

Query: 434  NDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLS 493
             +GR YF  M   Y IEP ++HY C+VD++ R+G L++A   I+ MPM P+  +W +LL 
Sbjct: 856  EEGRYYFETMSKRYRIEPRLDHYSCMVDLMGRSGLLQDAYGLIKEMPMEPSSGVWGALLG 915

Query: 494  GARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKD 553
              R + +  +G  AA  L ++ P     Y++LSNIY+A+G W   S +R +MK++G  + 
Sbjct: 916  ACRVYKDTQLGTKAAKRLFELEPRDGRNYIMLSNIYSASGLWKDASRIRNLMKQKGLVRA 975

Query: 554  PGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKE 613
             G S IEH   +H+FVVGD SHP++++I  KL E+R K+K+       T+ +L   D+  
Sbjct: 976  SGYSYIEHGNKIHKFVVGDWSHPESEKIQKKLKEIRKKMKSELGFKSRTEFVLHDVDEDV 1035

Query: 614  KEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNS 673
            KE  +  HSE++A+AFGL+ +    PI I KNLR+C DCH   K +S I  R II+RD+ 
Sbjct: 1036 KEEMINQHSEKIAMAFGLLVISPMEPIIIRKNLRICGDCHETAKAISLIEKRRIIIRDSK 1095

Query: 674  RFHHFKNGSCSCKDFW 689
            RFHHF  GSCSC+D+W
Sbjct: 1096 RFHHFLEGSCSCRDYW 1111



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 102/409 (24%), Positives = 193/409 (47%), Gaps = 48/409 (11%)

Query: 26  NILKFSSTHKETQQLHA-LSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQH 84
           ++L   +T KE +Q+HA L V   L     +   + ++ +  H   L YA  I DR    
Sbjct: 19  SLLDSGTTFKEIRQIHAKLYVDGTLKDDHLVGQFVKAVALSDH-TYLDYANQILDRS-DK 76

Query: 85  PSLVLYNLLIKCYVFNQRSHEALTLFCDLLD--RFLLPDNFTLPCVIKGAARLGAIKEGK 142
           P+L   N +I+ +  +    ++   +  +L     L PDN+T+  +++    LG  + G 
Sbjct: 77  PTLFALNSMIRAHCKSPVPEKSFDFYSRILSSGNGLKPDNYTVNFLVQACTGLGMRETGL 136

Query: 143 QIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKG 202
           Q+HG+  + GF  D  V + L+S+YA+ G +D   +VF+++   D V    ++    + G
Sbjct: 137 QVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSVSYPDFVCRTAMVTACARCG 196

Query: 203 EVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMP---------------- 246
           +V  A KLF+ MP++D  +W  ++ G+++ G+   A  +F+ M                 
Sbjct: 197 DVAFARKLFEGMPEKDPIAWNAMISGYAQVGESREALNLFHLMQLEGVKVNGVSMISVLS 256

Query: 247 ------------------NRNLVS-----WNAMINGYMKAGDVDSACELFDDMEIRDLIT 283
                              RN +         +++ Y K GD+D A E+F  ME +++ T
Sbjct: 257 ACTQLGALDQGRWAHSYIERNKIKITVRLGTTLVDLYAKCGDMDKAMEVFWGMEEKNVYT 316

Query: 284 WNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIV 343
           W+S + G  +NG   + L+L   M    V PN  T VS L   + +  +++G+  H   +
Sbjct: 317 WSSALNGLAMNGFGEKCLKLFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQ-KHFDSM 375

Query: 344 KNGFVVDGVLG--TLLIQMYSKCGSIESALTVFRAIS-KKKVGHWTAMI 389
           +N F ++  L     L+ +Y++ G +E A+++ + +  K     W++++
Sbjct: 376 RNEFGIEPQLDHYGCLVDLYARAGRLEDAVSIIQQMPMKAHAAVWSSLL 424



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 122/267 (45%), Gaps = 14/267 (5%)

Query: 295 GRFMEALELLETMLIGDV--LPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV 352
           G   +  E+L  M+  +V   PN+ T +S +SA        +G  +H  ++K+G + +  
Sbjct: 614 GYLGKCFEVLSRMMRSEVGFRPNEVTFLSMISACVHGGNKEEGVCIHGLVMKSGVLEEVK 673

Query: 353 LGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG 412
           +   L+ +Y K G + S+  +F  +S K +  W  MIV    +G+A + L  FN    +G
Sbjct: 674 VVNALMNLYGKTGDLISSCKLFEDLSVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSRWVG 733

Query: 413 MKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEA 472
           +KP   TF+ VL  C   G+V   +    +++   G          L+D+  + G LE++
Sbjct: 734 LKPDQATFLAVLRVCEDIGVVRLSQGIHGLIMF-CGFNANTCITTALLDLYAKLGRLEDS 792

Query: 473 KSTIESMPMRPNFVIWMSLLSGARNH--GNKDIGEYAANNLIKVAPDTIGCYVVLSNIYA 530
            ST+      P+ + W ++L+    H  G   I  +       ++PD    +V  +++  
Sbjct: 793 -STVFLEITSPDSMAWTAMLAAYATHGYGRDAIKHFELMVHYGLSPD----HVTFTHLLN 847

Query: 531 AAGQWDKVSEVR---EMMKKRGFRKDP 554
           A      V E R   E M KR +R +P
Sbjct: 848 ACSHSGLVEEGRYYFETMSKR-YRIEP 873



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 118/252 (46%), Gaps = 20/252 (7%)

Query: 40  LHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVF 99
           +H L +K+ ++    + + L++LY      +L  +  +F+  L   +LV +N +I  ++ 
Sbjct: 659 IHGLVMKSGVLEEVKVVNALMNLY--GKTGDLISSCKLFED-LSVKNLVSWNTMIVIHLQ 715

Query: 100 NQRSHEALTLFCDLLDRF--LLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
           N  + E L  F   + R+  L PD  T   V++    +G ++  + IHGL+   GF  + 
Sbjct: 716 NGLAEEGLAYFN--MSRWVGLKPDQATFLAVLRVCEDIGVVRLSQGIHGLIMFCGFNANT 773

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM--- 214
            + ++L+ +YAK G ++    VF  +   D ++W  ++  Y   G    A+K F+ M   
Sbjct: 774 CITTALLDLYAKLGRLEDSSTVFLEITSPDSMAWTAMLAAYATHGYGRDAIKHFELMVHY 833

Query: 215 ---PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR-----NLVSWNAMINGYMKAGDV 266
              PD   F  T L++  S  G VE  R  F  M  R      L  ++ M++   ++G +
Sbjct: 834 GLSPDHVTF--THLLNACSHSGLVEEGRYYFETMSKRYRIEPRLDHYSCMVDLMGRSGLL 891

Query: 267 DSACELFDDMEI 278
             A  L  +M +
Sbjct: 892 QDAYGLIKEMPM 903


>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
          Length = 820

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 237/665 (35%), Positives = 371/665 (55%), Gaps = 13/665 (1%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQH-PSLVLYNLL 93
           K   Q+H   +  N      + + L++LY       L+ A  +F     H  ++V +  L
Sbjct: 159 KHATQIHTQIIINNYTSLPFLFNNLINLYAK--CGCLNQALLLFSITHHHFKTIVTWTSL 216

Query: 94  IKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGF 153
           I          +AL+LF  +      P+ FT   ++  +A    +  G+Q+H L+ K GF
Sbjct: 217 ITHLSHFNMHLQALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGF 276

Query: 154 GFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLF-D 212
             + FV ++LV MYAK  ++    RVFD M +++LVSWN +I G+      + A+ +F D
Sbjct: 277 DANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKD 336

Query: 213 EMPDRDLF----SWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS----WNAMINGYMKAG 264
            + ++ +     S + ++   +  G +   R++   +    LV      N++++ Y K  
Sbjct: 337 VLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKYGLVPLTYVMNSLMDMYFKCR 396

Query: 265 DVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS 324
             D   +LF  +  RD++TWN ++ G+  N +F EA      M    +LP++A+  + L 
Sbjct: 397 FFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLH 456

Query: 325 AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGH 384
           + A LA L++G  +H  I+K G+V +  +   LI MY+KCGS+  A  VF  I    V  
Sbjct: 457 SSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVIS 516

Query: 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMI 444
           WTAMI    +HG A Q ++LF  M   G++P+ +TF+ VL+ACSH G V +G  +FN M 
Sbjct: 517 WTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMK 576

Query: 445 NDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIG 504
             + + P  EHY C+VD+L R G+L+EAK  IESMPM+P   +W +LL   R +GN  +G
Sbjct: 577 KIHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLKMG 636

Query: 505 EYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGV 564
             AA  L ++ P   G YV+L+N+   +G+ ++ +EVR +M   G RK+PG S I+ + +
Sbjct: 637 REAAERLFEMEPYNPGNYVLLANMCTRSGRLEEANEVRRLMGVNGVRKEPGCSWIDVKNM 696

Query: 565 LHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSER 624
              F   D+SH  +DEI+  L ++   +K  G+V +T  V   +E+ +E++  L  HSE+
Sbjct: 697 TFVFTAHDRSHSSSDEIYKMLEKLEKLVKKKGYVAETEFVTNHLEENEEEQG-LWYHSEK 755

Query: 625 LAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCS 684
           LA+AFGL+ +   SPIRI KNLR C  CH+V KL S I++REIIVRD +RFH F +G CS
Sbjct: 756 LALAFGLLTLPIDSPIRIKKNLRTCGHCHTVMKLASKIFDREIIVRDINRFHRFADGFCS 815

Query: 685 CKDFW 689
           C D+W
Sbjct: 816 CGDYW 820


>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
 gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 624

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/557 (38%), Positives = 330/557 (59%), Gaps = 11/557 (1%)

Query: 142 KQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKK 201
           +Q+H  +   G   +  V + L+ MY + G ++  + +FD M  +   SW+ ++ GY K 
Sbjct: 70  RQVHAQIATNGAFRNLAVANKLLYMYVERGALEDAQELFDGMSKRHPYSWSVIVGGYAKV 129

Query: 202 GEVEVAMKLFDEM----PDRDLFSWTCLVDGFS-----KCGKVEIAREIFYRMPNRNLVS 252
           G       +F E+       D +S   ++         KCG++     +   +   + V 
Sbjct: 130 GNFFSCFWMFRELLRSGAPLDDYSAPVVIRACRDLKDLKCGRLIHCITLKCGLDYGHFVC 189

Query: 253 WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDV 312
              +++ Y +   V+ A ++F  M  RDL TW  MI     +G  +E+L   + M    +
Sbjct: 190 -ATLVDMYARCKVVEDAHQIFVKMWKRDLATWTVMIGALAESGVPVESLVFFDRMRNQGI 248

Query: 313 LPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALT 372
           +P+   LV+ + A A L  +NK + +H+YI   G+ +D +LGT +I MY+KCGS+ESA  
Sbjct: 249 VPDKVALVTVVYACAKLGAMNKAKAIHAYINGTGYSLDVILGTAMIDMYAKCGSVESARW 308

Query: 373 VFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGL 432
           +F  +  + V  W+AMI   G HG   +AL+LF  M R G+ P  ITF+ +L ACSHAGL
Sbjct: 309 IFDRMQVRNVITWSAMIAAYGYHGQGEKALELFPMMLRSGILPNRITFVSLLYACSHAGL 368

Query: 433 VNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLL 492
           + +G+R+F+ M ++YG+ P ++HY C+VD+L R G L+EA   IE MP+  + V+W +LL
Sbjct: 369 IEEGQRFFSSMWDEYGVTPDVKHYTCMVDLLGRAGRLDEALEMIEGMPVEKDEVLWGALL 428

Query: 493 SGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRK 552
              R H + D+ E  A +L+K+     G YV+LSNIYA AG+W+ +++ R++M K G RK
Sbjct: 429 GACRIHRHLDLAERVARSLLKLQSQKPGHYVLLSNIYANAGKWEDMAKTRDLMTKGGLRK 488

Query: 553 DPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQK 612
            PG + IE    L++F VGDK+HP+++EI+  L  +  KL+ AG+ PDT  VL  + D++
Sbjct: 489 IPGRTWIEVGEKLYQFGVGDKTHPRSNEIYKMLKRLGEKLEVAGYHPDTNDVLYDV-DEE 547

Query: 613 EKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDN 672
            K+  L +HSE+LAIAFGL+ +    PIRI KNLRVC DCH+  K +S I  + IIVRD 
Sbjct: 548 VKQGLLYSHSEKLAIAFGLLVLPQGHPIRITKNLRVCGDCHTFCKFVSLIEQKTIIVRDA 607

Query: 673 SRFHHFKNGSCSCKDFW 689
            RFHHFK G CSC+D+W
Sbjct: 608 KRFHHFKEGVCSCRDYW 624



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 107/440 (24%), Positives = 189/440 (42%), Gaps = 87/440 (19%)

Query: 23  LHWNILKFSSTHK------ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARS 76
           LH++  +F S+        + +Q+HA         +  ++++LL +YV+     L  A+ 
Sbjct: 49  LHYDTKRFRSSLLSCRNLFQVRQVHAQIATNGAFRNLAVANKLLYMYVER--GALEDAQE 106

Query: 77  IFDRILQ-HPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARL 135
           +FD + + HP    +++++  Y           +F +LL      D+++ P VI+    L
Sbjct: 107 LFDGMSKRHP--YSWSVIVGGYAKVGNFFSCFWMFRELLRSGAPLDDYSAPVVIRACRDL 164

Query: 136 GAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLI 195
             +K G+ IH +  K G  +  FV ++LV MYA+   ++   ++F  M  +DL +W  +I
Sbjct: 165 KDLKCGRLIHCITLKCGLDYGHFVCATLVDMYARCKVVEDAHQIFVKMWKRDLATWTVMI 224

Query: 196 DGYVKKGEVEVAMKLFDEM------PDR-------------------------------- 217
               + G    ++  FD M      PD+                                
Sbjct: 225 GALAESGVPVESLVFFDRMRNQGIVPDKVALVTVVYACAKLGAMNKAKAIHAYINGTGYS 284

Query: 218 -DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDM 276
            D+   T ++D ++KCG VE AR IF RM  RN+++W+AMI  Y                
Sbjct: 285 LDVILGTAMIDMYAKCGSVESARWIFDRMQVRNVITWSAMIAAY---------------- 328

Query: 277 EIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKG- 335
                        GY  +G+  +ALEL   ML   +LPN  T VS L A +   ++ +G 
Sbjct: 329 -------------GY--HGQGEKALELFPMMLRSGILPNRITFVSLLYACSHAGLIEEGQ 373

Query: 336 RWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS-KKKVGHWTAMIVGLGM 394
           R+  S   + G   D    T ++ +  + G ++ AL +   +  +K    W A++    +
Sbjct: 374 RFFSSMWDEYGVTPDVKHYTCMVDLLGRAGRLDEALEMIEGMPVEKDEVLWGALLGACRI 433

Query: 395 HGMATQALDLFNKMCRMGMK 414
           H    + LDL  ++ R  +K
Sbjct: 434 H----RHLDLAERVARSLLK 449



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 72/302 (23%), Positives = 146/302 (48%), Gaps = 18/302 (5%)

Query: 40  LHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVF 99
           +H +++K  L Y   + + L+ +Y    +  +  A  IF ++ +   L  + ++I     
Sbjct: 173 IHCITLKCGLDYGHFVCATLVDMYARCKV--VEDAHQIFVKMWKR-DLATWTVMIGALAE 229

Query: 100 NQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFV 159
           +    E+L  F  + ++ ++PD   L  V+   A+LGA+ + K IH  +   G+  D  +
Sbjct: 230 SGVPVESLVFFDRMRNQGIVPDKVALVTVVYACAKLGAMNKAKAIHAYINGTGYSLDVIL 289

Query: 160 LSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM----- 214
            ++++ MYAK G ++  R +FD M  +++++W+ +I  Y   G+ E A++LF  M     
Sbjct: 290 GTAMIDMYAKCGSVESARWIFDRMQVRNVITWSAMIAAYGYHGQGEKALELFPMMLRSGI 349

Query: 215 -PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS-----WNAMINGYMKAGDVDS 268
            P+R  F    L+   S  G +E  +  F  M +   V+     +  M++   +AG +D 
Sbjct: 350 LPNRITF--VSLLYACSHAGLIEEGQRFFSSMWDEYGVTPDVKHYTCMVDLLGRAGRLDE 407

Query: 269 ACELFDDMEI-RDLITWNSMIAGYELNGRFMEALELLETML-IGDVLPNDATLVSALSAV 326
           A E+ + M + +D + W +++    ++     A  +  ++L +    P    L+S + A 
Sbjct: 408 ALEMIEGMPVEKDEVLWGALLGACRIHRHLDLAERVARSLLKLQSQKPGHYVLLSNIYAN 467

Query: 327 AG 328
           AG
Sbjct: 468 AG 469


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/546 (39%), Positives = 328/546 (60%), Gaps = 26/546 (4%)

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGY----VKKGEVEVAMKLFDE 213
           F+++ L++MY KFG +   + VFD M D+++VSW  +I  Y    +    +E  + +  E
Sbjct: 1   FLINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLRE 60

Query: 214 MPDRDLFSWTCLV---DGFSKCG-------KVEIAREIFYRMPNRNLVSWNAMINGYMKA 263
               ++F+++ ++   DG            K+ +  ++F R         +A+I+ Y + 
Sbjct: 61  GVRPNMFTYSSVLRACDGLFNLRQLHCCIIKIGLDSDVFVR---------SALIDVYSRW 111

Query: 264 GDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSAL 323
           G++++A  +FD+M   DL+ W+S+IAG+  N    EAL L + M     L    TL S L
Sbjct: 112 GELENALRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVL 171

Query: 324 SAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVG 383
            A  GLA+L  GR +H +++K  +  D +L   L+ MY KCGS+E A  VF  + +K V 
Sbjct: 172 RACTGLALLELGRQVHVHVLK--YDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVI 229

Query: 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMM 443
            W+ MI GL  +G + +AL LF  M  +G+KP  +T +GVL ACSHAGLV +G  YF+ M
Sbjct: 230 SWSTMIAGLAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSM 289

Query: 444 INDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDI 503
              +GI+P  EHYGC++D+L R G L EA   I  M   P+ V W +LL+  R H N D+
Sbjct: 290 KELFGIDPGREHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDV 349

Query: 504 GEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRG 563
             +AA  ++++ P   G YV+LSNIYA   +W+ V+EVR  M  RG +K+PG S IE   
Sbjct: 350 AIHAAKQILRLDPQDAGTYVLLSNIYANTQRWNDVAEVRRTMTNRGIKKEPGCSWIEVSK 409

Query: 564 VLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSE 623
            +H F++GD+SHPQ  EI+ +L+++  KL   G+VPDT  VL  +E ++ +++ L  HSE
Sbjct: 410 QIHAFILGDRSHPQIREINIQLNQLIYKLMGVGYVPDTNFVLQDLEGEQMQDS-LRYHSE 468

Query: 624 RLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSC 683
           +LAI FGL+++     IRI KNLR+C DCH  TKLL+ +  R I++RD  R+HHF++G C
Sbjct: 469 KLAIVFGLMSLPRGQTIRIRKNLRICGDCHLFTKLLAKMEQRIIVIRDPVRYHHFQDGLC 528

Query: 684 SCKDFW 689
           SC DFW
Sbjct: 529 SCGDFW 534



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 105/376 (27%), Positives = 188/376 (50%), Gaps = 47/376 (12%)

Query: 59  LLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFL 118
           L+++YV   +  LH A+ +FD+ +   ++V +  +I  Y   + + +AL     +L   +
Sbjct: 6   LINMYVKFGL--LHDAQDVFDK-MPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGV 62

Query: 119 LPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRR 178
            P+ FT   V++    L  ++   Q+H  + K+G   D FV S+L+ +Y+++GE++   R
Sbjct: 63  RPNMFTYSSVLRACDGLFNLR---QLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALR 119

Query: 179 VFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFS-WTCLVDGFSKC---GK 234
           VFD M   DLV W+ +I G+ +  + + A++LF  M      +  T L      C     
Sbjct: 120 VFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLAL 179

Query: 235 VEIAREIFYRM--PNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYE 292
           +E+ R++   +   +++L+  NA+++ Y K G ++ A  +F  M  +D+I+W++MIAG  
Sbjct: 180 LELGRQVHVHVLKYDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLA 239

Query: 293 LNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKG-RWMHSYIVKNGFVVDG 351
            NG   EAL+L E+M +  + PN  T+V  L A +   ++ +G  + HS  +K  F +D 
Sbjct: 240 QNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHS--MKELFGID- 296

Query: 352 VLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRM 411
                                           H+  MI  LG  G  ++A+DL N+   M
Sbjct: 297 ----------------------------PGREHYGCMIDLLGRAGRLSEAVDLINE---M 325

Query: 412 GMKPTAITFIGVLNAC 427
             +P A+T+  +LNAC
Sbjct: 326 ECEPDAVTWRALLNAC 341


>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
          Length = 760

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 243/691 (35%), Positives = 364/691 (52%), Gaps = 86/691 (12%)

Query: 31  SSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARS--IFDRILQHPSLV 88
           +++  +T+Q HA  +KT L   + ++++LLS Y     NN+ +A +  + D ++  P++ 
Sbjct: 26  TASLSQTRQAHAHILKTGLFNDTHLATKLLSHYA----NNMCFADATLVLD-LVPEPNVF 80

Query: 89  LYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLV 148
            ++ LI  +    + H AL+ F  +L R L+PDN  LP  +K  A L A+K  +Q+HG+ 
Sbjct: 81  SFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIA 140

Query: 149 FKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD--------------------- 187
              GF  D FV SSLV MY K  +I    RVFD M + D                     
Sbjct: 141 SVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAK 200

Query: 188 --------------LVSWNCLIDGYVKKGEVEVAMKLFDEM------PD----------- 216
                         L+SWN +I G+   G    A+ +F +M      PD           
Sbjct: 201 RLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAV 260

Query: 217 ------------------RDLFSWTC----LVDGFSKCGKVEIAREIFYRMPNRNLVSWN 254
                             + L S  C    L+D + KC       ++F +M + ++ S N
Sbjct: 261 GDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCN 320

Query: 255 AMINGYMKAGDVDSACELFDDMEIR----DLITWNSMIAGYELNGRFMEALELLETMLIG 310
           A I G  + G V+S+  LF  ++ +    ++++W SMIA    NGR MEALEL   M I 
Sbjct: 321 AFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDMEALELFREMQIA 380

Query: 311 DVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESA 370
            V PN  T+   L A   +A L  G+  H + ++ G   D  +G+ LI MY+KCG I+++
Sbjct: 381 GVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQAS 440

Query: 371 LTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHA 430
              F  I  K +  W A+I G  MHG A +A+++F+ M R G KP  I+F  VL+ACS +
Sbjct: 441 RICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQS 500

Query: 431 GLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMS 490
           GL  +G  YFN M + YGIE  +EHY C+V +L R G LE+A + I  MP+ P+  +W +
Sbjct: 501 GLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGA 560

Query: 491 LLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGF 550
           LLS  R H N  +GE AA  L ++ P   G Y++LSNIYA+ G W++V+ VR+MMK +G 
Sbjct: 561 LLSSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGL 620

Query: 551 RKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIED 610
           RK+PG S IE +  +H  + GDKSHPQ  +I   L ++  ++K  G+ P+   VL  +E+
Sbjct: 621 RKNPGCSWIEVKNKVHMLLAGDKSHPQMTQIIENLDKLSMEMKKLGYFPEINFVLQDVEE 680

Query: 611 QKEKEAELENHSERLAIAFGLINVKSRSPIR 641
           Q +KE  L  HSE+LA+ FGL+N     P++
Sbjct: 681 Q-DKEQILCGHSEKLAVVFGLLNTPPGYPLQ 710


>gi|297794613|ref|XP_002865191.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311026|gb|EFH41450.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 238/665 (35%), Positives = 357/665 (53%), Gaps = 64/665 (9%)

Query: 71  LHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIK 130
           L  AR +FD++   P + LY  +I  Y  + R  +AL LF    D   L D  +   +I 
Sbjct: 51  LDEAREVFDQV-PSPHVSLYTKMISGYTRSNRLVDALNLF----DEMPLRDVVSWNSMIS 105

Query: 131 GAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYA------KFGEIDLGRRVFDAMD 184
           G    G I    ++          FD+    S+VS  A      +FG +D   R+F  M 
Sbjct: 106 GCVECGDIDTAVKM----------FDEMPERSVVSWTAMVNGCFRFGMVDQAERLFCQMP 155

Query: 185 DKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYR 244
            KD+ +WN ++ GY++ G+V+ A+KLF +MP +++ SWT ++ G  +  +   A  +F  
Sbjct: 156 VKDIAAWNAMVHGYLQFGKVDDALKLFKQMPRKNVISWTTMICGLDQNERSGEALNLFKN 215

Query: 245 MPNRNLVSWN---------------------------------------AMINGYMKAGD 265
           M    + S +                                       ++I  Y     
Sbjct: 216 MLRCCIKSTSRTFTCVITACANAPAFHMGTQVHGFIIKSGFLYEEYVTASLITLYANCKR 275

Query: 266 VDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSA 325
            + + ++F +M    +  W ++++GY LN +  +AL +   M+   +LPN +T  S L++
Sbjct: 276 TEDSRKVFGEMVHEKVAVWTALLSGYSLNRKHEDALNVFSEMIRNSILPNQSTFASGLNS 335

Query: 326 VAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHW 385
            + L  L+ G+ +H   VK G      +G  L+ MYS  G++  A++VF  I KK +  W
Sbjct: 336 CSALGTLDWGKEIHGVAVKLGLGTVAFVGNSLVVMYSDSGNVNDAVSVFIEIFKKSIVSW 395

Query: 386 TAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN 445
            ++IVG   HG    A  +F +M R+  +P  ITF G+L+ACSH G +  GR+ F  + +
Sbjct: 396 NSIIVGCAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLQKGRKLFYYISS 455

Query: 446 DYG-IEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIG 504
               I+  I+HY C+VDIL R G L+EA+  IESM ++PN ++W++LLS  R H + D G
Sbjct: 456 GLNHIDRKIQHYTCMVDILGRCGELKEAEKLIESMVVKPNEMVWLALLSACRMHSDVDRG 515

Query: 505 EYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGV 564
           E AA  +  +   +   YV+LSNIYA+AG+W  VS++R  MK++G  K PGSS +  RG 
Sbjct: 516 EKAAAAIFNLDSKSSAAYVLLSNIYASAGRWSSVSKLRVKMKQKGIMKKPGSSWVVIRGK 575

Query: 565 LHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSER 624
            HEF  GD+  P    I  KL  +R KLK  G+VPD    L  +ED+ +KE  L  HSER
Sbjct: 576 KHEFFSGDR--PHCLRIFEKLEFLREKLKELGYVPDYRSALHDVEDE-QKEEMLWYHSER 632

Query: 625 LAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCS 684
           LAIAFGLIN    S + ++KNLRVC DCH+V KL+S +   +I++RD +RFHHFKNG CS
Sbjct: 633 LAIAFGLINTVEGSTVTVMKNLRVCEDCHTVIKLISRVVGCKIVLRDPTRFHHFKNGMCS 692

Query: 685 CKDFW 689
           C D+W
Sbjct: 693 CGDYW 697



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 91/390 (23%), Positives = 174/390 (44%), Gaps = 66/390 (16%)

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSW 253
           LI  ++    ++ A ++FD++P   +  +T ++ G+++  ++  A  +F  MP R++VSW
Sbjct: 41  LICNHLLNRRLDEAREVFDQVPSPHVSLYTKMISGYTRSNRLVDALNLFDEMPLRDVVSW 100

Query: 254 NAMINGYMKAGDVDSACELFDD-------------------------------MEIRDLI 282
           N+MI+G ++ GD+D+A ++FD+                               M ++D+ 
Sbjct: 101 NSMISGCVECGDIDTAVKMFDEMPERSVVSWTAMVNGCFRFGMVDQAERLFCQMPVKDIA 160

Query: 283 TWNSMIAGYELNGRFMEALELLETMLIGDVL----------------------------- 313
            WN+M+ GY   G+  +AL+L + M   +V+                             
Sbjct: 161 AWNAMVHGYLQFGKVDDALKLFKQMPRKNVISWTTMICGLDQNERSGEALNLFKNMLRCC 220

Query: 314 --PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESAL 371
                 T    ++A A     + G  +H +I+K+GF+ +  +   LI +Y+ C   E + 
Sbjct: 221 IKSTSRTFTCVITACANAPAFHMGTQVHGFIIKSGFLYEEYVTASLITLYANCKRTEDSR 280

Query: 372 TVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAG 431
            VF  +  +KV  WTA++ G  ++     AL++F++M R  + P   TF   LN+CS  G
Sbjct: 281 KVFGEMVHEKVAVWTALLSGYSLNRKHEDALNVFSEMIRNSILPNQSTFASGLNSCSALG 340

Query: 432 LVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSL 491
            ++ G+    + +   G+         LV +   +G + +A S    +  + + V W S+
Sbjct: 341 TLDWGKEIHGVAVK-LGLGTVAFVGNSLVVMYSDSGNVNDAVSVFIEI-FKKSIVSWNSI 398

Query: 492 LSGARNHGNKDIGEYAANNLIKV--APDTI 519
           + G   HG           +I++   PD I
Sbjct: 399 IVGCAQHGRGKWAFVIFGQMIRLNKEPDEI 428



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 139/267 (52%), Gaps = 14/267 (5%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYV 98
           Q+H   +K+  +Y   +++ L++LY +        +R +F  ++ H  + ++  L+  Y 
Sbjct: 246 QVHGFIIKSGFLYEEYVTASLITLYAN--CKRTEDSRKVFGEMV-HEKVAVWTALLSGYS 302

Query: 99  FNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKF 158
            N++  +AL +F +++   +LP+  T    +   + LG +  GK+IHG+  KLG G   F
Sbjct: 303 LNRKHEDALNVFSEMIRNSILPNQSTFASGLNSCSALGTLDWGKEIHGVAVKLGLGTVAF 362

Query: 159 VLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM---- 214
           V +SLV MY+  G ++    VF  +  K +VSWN +I G  + G  + A  +F +M    
Sbjct: 363 VGNSLVVMYSDSGNVNDAVSVFIEIFKKSIVSWNSIIVGCAQHGRGKWAFVIFGQMIRLN 422

Query: 215 PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMP------NRNLVSWNAMINGYMKAGDVDS 268
            + D  ++T L+   S CG ++  R++FY +       +R +  +  M++   + G++  
Sbjct: 423 KEPDEITFTGLLSACSHCGFLQKGRKLFYYISSGLNHIDRKIQHYTCMVDILGRCGELKE 482

Query: 269 ACELFDDMEIR-DLITWNSMIAGYELN 294
           A +L + M ++ + + W ++++   ++
Sbjct: 483 AEKLIESMVVKPNEMVWLALLSACRMH 509



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 126/287 (43%), Gaps = 34/287 (11%)

Query: 233 GKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYE 292
           GK   +  +     NR ++  N ++N  +     D A E+FD +    +  +  MI+GY 
Sbjct: 23  GKSFRSYSVTVEFQNREVLICNHLLNRRL-----DEAREVFDQVPSPHVSLYTKMISGYT 77

Query: 293 LNGRFMEALELLETMLIGDVLPNDATLVSAL------SAVAGLAVLNKGRWMHSYIVKNG 346
            + R ++AL L + M + DV+  ++ +   +      +AV     + +   +    + NG
Sbjct: 78  RSNRLVDALNLFDEMPLRDVVSWNSMISGCVECGDIDTAVKMFDEMPERSVVSWTAMVNG 137

Query: 347 FVVDGVLGT---LLIQM--------------YSKCGSIESALTVFRAISKKKVGHWTAMI 389
               G++     L  QM              Y + G ++ AL +F+ + +K V  WT MI
Sbjct: 138 CFRFGMVDQAERLFCQMPVKDIAAWNAMVHGYLQFGKVDDALKLFKQMPRKNVISWTTMI 197

Query: 390 VGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGI 449
            GL  +  + +AL+LF  M R  +K T+ TF  V+ AC++A   + G +    +I    +
Sbjct: 198 CGLDQNERSGEALNLFKNMLRCCIKSTSRTFTCVITACANAPAFHMGTQVHGFIIKSGFL 257

Query: 450 EPTIEHY--GCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG 494
               E Y    L+ +       E+++     M +     +W +LLSG
Sbjct: 258 ---YEEYVTASLITLYANCKRTEDSRKVFGEM-VHEKVAVWTALLSG 300


>gi|15240583|ref|NP_196827.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181132|sp|Q9LYV3.1|PP377_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial; Flags: Precursor
 gi|7529278|emb|CAB86630.1| putative protein [Arabidopsis thaliana]
 gi|332004486|gb|AED91869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 230/659 (34%), Positives = 372/659 (56%), Gaps = 13/659 (1%)

Query: 40  LHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVF 99
           LH+  VK     ++ + + L++ Y      ++  AR++F+ IL    +V++  ++ CYV 
Sbjct: 168 LHSPIVKLGYDSNAFVGAALINAY--SVCGSVDSARTVFEGILCK-DIVVWAGIVSCYVE 224

Query: 100 NQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFV 159
           N    ++L L   +     +P+N+T    +K +  LGA    K +HG + K  +  D  V
Sbjct: 225 NGYFEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRV 284

Query: 160 LSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR-- 217
              L+ +Y + G++    +VF+ M   D+V W+ +I  + + G    A+ LF  M +   
Sbjct: 285 GVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFV 344

Query: 218 --DLFSWTCLVDG--FSKC-GKVEIAREIFYRMP-NRNLVSWNAMINGYMKAGDVDSACE 271
             + F+ + +++G    KC G  E    +  ++  + ++   NA+I+ Y K   +D+A +
Sbjct: 345 VPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVK 404

Query: 272 LFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAV 331
           LF ++  ++ ++WN++I GYE  G   +A  +    L   V   + T  SAL A A LA 
Sbjct: 405 LFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFREALRNQVSVTEVTFSSALGACASLAS 464

Query: 332 LNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVG 391
           ++ G  +H   +K        +   LI MY+KCG I+ A +VF  +    V  W A+I G
Sbjct: 465 MDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVFNEMETIDVASWNALISG 524

Query: 392 LGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP 451
              HG+  QAL + + M     KP  +TF+GVL+ CS+AGL++ G+  F  MI D+GIEP
Sbjct: 525 YSTHGLGRQALRILDIMKDRDCKPNGLTFLGVLSGCSNAGLIDQGQECFESMIRDHGIEP 584

Query: 452 TIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNL 511
            +EHY C+V +L R+G L++A   IE +P  P+ +IW ++LS + N  N++    +A  +
Sbjct: 585 CLEHYTCMVRLLGRSGQLDKAMKLIEGIPYEPSVMIWRAMLSASMNQNNEEFARRSAEEI 644

Query: 512 IKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVG 571
           +K+ P     YV++SN+YA A QW  V+ +R+ MK+ G +K+PG S IEH+G +H F VG
Sbjct: 645 LKINPKDEATYVLVSNMYAGAKQWANVASIRKSMKEMGVKKEPGLSWIEHQGDVHYFSVG 704

Query: 572 DKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGL 631
              HP    I+  L  +  K   AG+VPD   VLL ++D+ EK+  L  HSERLA+A+GL
Sbjct: 705 LSDHPDMKLINGMLEWLNMKATRAGYVPDRNAVLLDMDDE-EKDKRLWVHSERLALAYGL 763

Query: 632 INV-KSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           + +  SR+ I I+KNLR+C+DCHS  K++S I  R++++RD +RFHHF  G CSC D W
Sbjct: 764 VRMPSSRNRILIMKNLRICSDCHSAMKVISSIVQRDLVIRDMNRFHHFHAGVCSCGDHW 822



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/363 (26%), Positives = 168/363 (46%), Gaps = 6/363 (1%)

Query: 141 GKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVK 200
            K IH  + K G   D F  + L++ Y K G       +FD M +++ VS+  L  GY  
Sbjct: 68  AKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLFDEMPERNNVSFVTLAQGYAC 127

Query: 201 KGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIA----REIFYRMPNRNLVSWNAM 256
           +  + +  +L  E  + +   +T  +  F    K EI       I     + N     A+
Sbjct: 128 QDPIGLYSRLHREGHELNPHVFTSFLKLFVSLDKAEICPWLHSPIVKLGYDSNAFVGAAL 187

Query: 257 INGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPND 316
           IN Y   G VDSA  +F+ +  +D++ W  +++ Y  NG F ++L+LL  M +   +PN+
Sbjct: 188 INAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPNN 247

Query: 317 ATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRA 376
            T  +AL A  GL   +  + +H  I+K  +V+D  +G  L+Q+Y++ G +  A  VF  
Sbjct: 248 YTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNE 307

Query: 377 ISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDG 436
           + K  V  W+ MI     +G   +A+DLF +M    + P   T   +LN C+       G
Sbjct: 308 MPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCAIGKCSGLG 367

Query: 437 RRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGAR 496
            +   +++   G +  I     L+D+  +   ++ A      +  + N V W +++ G  
Sbjct: 368 EQLHGLVVK-VGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSK-NEVSWNTVIVGYE 425

Query: 497 NHG 499
           N G
Sbjct: 426 NLG 428



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 119/263 (45%), Gaps = 13/263 (4%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +QLH L VK        +S+ L+ +Y       +  A  +F   L   + V +N +I  Y
Sbjct: 368 EQLHGLVVKVGFDLDIYVSNALIDVYA--KCEKMDTAVKLFAE-LSSKNEVSWNTVIVGY 424

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
                  +A ++F + L   +     T    +   A L ++  G Q+HGL  K       
Sbjct: 425 ENLGEGGKAFSMFREALRNQVSVTEVTFSSALGACASLASMDLGVQVHGLAIKTNNAKKV 484

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
            V +SL+ MYAK G+I   + VF+ M+  D+ SWN LI GY   G    A+++ D M DR
Sbjct: 485 AVSNSLIDMYAKCGDIKFAQSVFNEMETIDVASWNALISGYSTHGLGRQALRILDIMKDR 544

Query: 218 DL----FSWTCLVDGFSKCGKVEIAREIFYRMPNRN-----LVSWNAMINGYMKAGDVDS 268
           D      ++  ++ G S  G ++  +E F  M   +     L  +  M+    ++G +D 
Sbjct: 545 DCKPNGLTFLGVLSGCSNAGLIDQGQECFESMIRDHGIEPCLEHYTCMVRLLGRSGQLDK 604

Query: 269 ACELFDDMEIR-DLITWNSMIAG 290
           A +L + +     ++ W +M++ 
Sbjct: 605 AMKLIEGIPYEPSVMIWRAMLSA 627



 Score = 47.8 bits (112), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 35/179 (19%), Positives = 86/179 (48%), Gaps = 7/179 (3%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYV 98
           Q+H L++KTN      +S+ L+ +Y      ++ +A+S+F+  ++   +  +N LI  Y 
Sbjct: 470 QVHGLAIKTNNAKKVAVSNSLIDMYA--KCGDIKFAQSVFNE-METIDVASWNALISGYS 526

Query: 99  FNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKF 158
            +    +AL +   + DR   P+  T   V+ G +  G I +G++    + +   G +  
Sbjct: 527 THGLGRQALRILDIMKDRDCKPNGLTFLGVLSGCSNAGLIDQGQECFESMIR-DHGIEPC 585

Query: 159 V--LSSLVSMYAKFGEIDLGRRVFDAMD-DKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
           +   + +V +  + G++D   ++ + +  +  ++ W  ++   + +   E A +  +E+
Sbjct: 586 LEHYTCMVRLLGRSGQLDKAMKLIEGIPYEPSVMIWRAMLSASMNQNNEEFARRSAEEI 644


>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial; Flags: Precursor
 gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
          Length = 633

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/588 (35%), Positives = 342/588 (58%), Gaps = 14/588 (2%)

Query: 112 DLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFG 171
           DL   ++  D      ++K       + +G+ +H  + +  F  D  + ++L++MYAK G
Sbjct: 50  DLEGSYIPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCG 109

Query: 172 EIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCL 225
            ++  R+VF+ M  +D V+W  LI GY +      A+  F++M      P+   F+ + +
Sbjct: 110 SLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNE--FTLSSV 167

Query: 226 VDGFSK----CGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDL 281
           +   +     C   ++         + N+   +A+++ Y + G +D A  +FD +E R+ 
Sbjct: 168 IKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRND 227

Query: 282 ITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSY 341
           ++WN++IAG+       +ALEL + ML     P+  +  S   A +    L +G+W+H+Y
Sbjct: 228 VSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAY 287

Query: 342 IVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQA 401
           ++K+G  +    G  L+ MY+K GSI  A  +F  ++K+ V  W +++     HG   +A
Sbjct: 288 MIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEA 347

Query: 402 LDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVD 461
           +  F +M R+G++P  I+F+ VL ACSH+GL+++G  Y+ +M  D GI P   HY  +VD
Sbjct: 348 VWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVPEAWHYVTVVD 406

Query: 462 ILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGC 521
           +L R G L  A   IE MP+ P   IW +LL+  R H N ++G YAA ++ ++ PD  G 
Sbjct: 407 LLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGP 466

Query: 522 YVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEI 581
           +V+L NIYA+ G+W+  + VR+ MK+ G +K+P  S +E    +H FV  D+ HPQ +EI
Sbjct: 467 HVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEI 526

Query: 582 HSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIR 641
             K  E+  K+K  G+VPDT+ V++ + DQ+E+E  L+ HSE++A+AF L+N    S I 
Sbjct: 527 ARKWEEVLAKIKELGYVPDTSHVIVHV-DQQEREVNLQYHSEKIALAFALLNTPPGSTIH 585

Query: 642 IVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           I KN+RVC DCH+  KL S +  REIIVRD +RFHHFK+G+CSCKD+W
Sbjct: 586 IKKNIRVCGDCHTAIKLASKVVGREIIVRDTNRFHHFKDGNCSCKDYW 633



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 101/348 (29%), Positives = 174/348 (50%), Gaps = 16/348 (4%)

Query: 59  LLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFL 118
           LL++Y      +L  AR +F+++ Q    V +  LI  Y  + R  +AL  F  +L    
Sbjct: 101 LLNMYAK--CGSLEEARKVFEKMPQR-DFVTWTTLISGYSQHDRPCDALLFFNQMLRFGY 157

Query: 119 LPDNFTLPCVIKGAA--RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLG 176
            P+ FTL  VIK AA  R G    G Q+HG   K GF  +  V S+L+ +Y ++G +D  
Sbjct: 158 SPNEFTLSSVIKAAAAERRGCC--GHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDA 215

Query: 177 RRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKC 232
           + VFDA++ ++ VSWN LI G+ ++   E A++LF  M         FS+  L    S  
Sbjct: 216 QLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSST 275

Query: 233 GKVEIAREIFYRM--PNRNLVSW--NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMI 288
           G +E  + +   M      LV++  N +++ Y K+G +  A ++FD +  RD+++WNS++
Sbjct: 276 GFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLL 335

Query: 289 AGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFV 348
             Y  +G   EA+   E M    + PN+ + +S L+A +   +L++G   +  + K+G V
Sbjct: 336 TAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIV 395

Query: 349 VDGVLGTLLIQMYSKCGSIESALTVFRAIS-KKKVGHWTAMIVGLGMH 395
            +      ++ +  + G +  AL     +  +     W A++    MH
Sbjct: 396 PEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMH 443



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 124/262 (47%), Gaps = 16/262 (6%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
            QLH   VK     +  + S LL LY    +  +  A+ +FD  L+  + V +N LI  +
Sbjct: 181 HQLHGFCVKCGFDSNVHVGSALLDLYTRYGL--MDDAQLVFD-ALESRNDVSWNALIAGH 237

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
                + +AL LF  +L     P +F+   +    +  G +++GK +H  + K G     
Sbjct: 238 ARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVA 297

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM--- 214
           F  ++L+ MYAK G I   R++FD +  +D+VSWN L+  Y + G  + A+  F+EM   
Sbjct: 298 FAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRV 357

Query: 215 ---PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLV--SWN--AMINGYMKAGDVD 267
              P+    S+  ++   S  G ++     +  M    +V  +W+   +++   +AGD++
Sbjct: 358 GIRPNE--ISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLN 415

Query: 268 SACELFDDMEIRDLIT-WNSMI 288
            A    ++M I      W +++
Sbjct: 416 RALRFIEEMPIEPTAAIWKALL 437


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 233/640 (36%), Positives = 356/640 (55%), Gaps = 48/640 (7%)

Query: 59  LLSLYVDP-HINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRF 117
           LLS Y     I NL   ++ FDR+    S V YN  I  +  N    E+L LF  +    
Sbjct: 95  LLSAYAKSGSIQNL---KATFDRMPFRDS-VSYNTTIAGFSGNSCPQESLELFKRMQREG 150

Query: 118 LLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGR 177
             P  +T+  ++  +A+L  ++ GKQIHG +    F  + F+                  
Sbjct: 151 FEPTEYTIVSILNASAQLSDLRYGKQIHGSIIVRNFLGNVFI------------------ 192

Query: 178 RVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEI 237
                        WN L D Y K GE+E A  LFD +  ++L SW  ++ G++K G+ E 
Sbjct: 193 -------------WNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEK 239

Query: 238 AREIFYRM------PNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGY 291
              + ++M      P++  V+ + +I  Y + G VD A  +F + + +D++ W +M+ GY
Sbjct: 240 CIGLLHQMRLSGHMPDQ--VTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGY 297

Query: 292 ELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDG 351
             NGR  +AL L   ML+  + P+  TL S +S+ A LA L+ G+ +H   +  G   + 
Sbjct: 298 AKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNL 357

Query: 352 VLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRM 411
           ++ + LI MYSKCG I+ A +VF  +  + V  W AMIVG   +G    AL+LF  M + 
Sbjct: 358 LVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQ 417

Query: 412 GMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEE 471
             KP  +TFIG+L+AC H   +  G+ YF+ + N +G+ PT++HY C+V++L RTG +E+
Sbjct: 418 KFKPDNVTFIGILSACLHCNWIEQGQEYFDSITNQHGMTPTLDHYACMVNLLGRTGRIEQ 477

Query: 472 AKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAA 531
           A + I++M   P+F+IW +LLS     G+    E AA +L ++ P     Y++LSN+YA+
Sbjct: 478 AVALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYAS 537

Query: 532 AGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNK 591
            G+W  V+ VR +MK +  +K  G S IE    +H F   D++HP++++I+ KL+ +  K
Sbjct: 538 MGRWKDVASVRNLMKSKNVKKFAGFSWIEIDNEVHRFTSEDRTHPESEDIYEKLNMLIGK 597

Query: 592 LKAAGHVPDTTQVLLCI-EDQKEKEAELENHSERLAIAFGLINVKSR-SPIRIVKNLRVC 649
           L+  G  P+T  VL  + ED+K K      HSE+LA+AFGLI   +  SPIRI+KN+R+C
Sbjct: 598 LQEEGFTPNTNLVLHDVGEDEKFKSICF--HSEKLALAFGLIKKPNGISPIRIIKNIRIC 655

Query: 650 NDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           NDCH   K  S I  R+II+RD++RFHHF  G CSC D W
Sbjct: 656 NDCHEFMKFASRIIGRQIILRDSNRFHHFSTGKCSCNDNW 695



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 110/412 (26%), Positives = 185/412 (44%), Gaps = 78/412 (18%)

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP 215
           D F+ + L+ +YAKFG++   + +FD M  +D+ SWN L+  Y K G ++     FD MP
Sbjct: 57  DSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRDIFSWNALLSAYAKSGSIQNLKATFDRMP 116

Query: 216 DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR--------------------------- 248
            RD  S+   + GFS     + + E+F RM                              
Sbjct: 117 FRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLSDLRYGKQ 176

Query: 249 ------------NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGR 296
                       N+  WNA+ + Y K G+++ A  LFD +  ++L++WN MI+GY  NG+
Sbjct: 177 IHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQ 236

Query: 297 FMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTL 356
             + + LL  M +   +P+  T+ + ++A                               
Sbjct: 237 PEKCIGLLHQMRLSGHMPDQVTMSTIIAA------------------------------- 265

Query: 357 LIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT 416
               Y +CG ++ A  VF    +K +  WTAM+VG   +G    AL LFN+M    ++P 
Sbjct: 266 ----YCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPD 321

Query: 417 AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTI 476
           + T   V+++C+    ++ G+      I   G+   +     L+D+  + G++++A+S  
Sbjct: 322 SYTLSSVVSSCAKLASLHHGQAVHGKSI-LAGLNNNLLVSSALIDMYSKCGFIDDARSVF 380

Query: 477 ESMPMRPNFVIWMSLLSG-ARNHGNKDIGEYAANNL-IKVAPDTIGCYVVLS 526
             MP R N V W +++ G A+N  +KD  E   N L  K  PD +    +LS
Sbjct: 381 NLMPTR-NVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILS 431



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 78/248 (31%), Positives = 129/248 (52%), Gaps = 5/248 (2%)

Query: 199 VKKGEVEVAMKLFDEMPDR-----DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSW 253
           V+  E+  A +L   M        D F    L+  ++K GK+  A+ +F +M  R++ SW
Sbjct: 33  VRTNEINQAKRLQSHMEHHLFQPTDSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRDIFSW 92

Query: 254 NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL 313
           NA+++ Y K+G + +    FD M  RD +++N+ IAG+  N    E+LEL + M      
Sbjct: 93  NALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFE 152

Query: 314 PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTV 373
           P + T+VS L+A A L+ L  G+ +H  I+   F+ +  +   L  MY+KCG IE A  +
Sbjct: 153 PTEYTIVSILNASAQLSDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWL 212

Query: 374 FRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLV 433
           F  ++KK +  W  MI G   +G   + + L ++M   G  P  +T   ++ A    G V
Sbjct: 213 FDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRV 272

Query: 434 NDGRRYFN 441
           ++ RR F+
Sbjct: 273 DEARRVFS 280


>gi|224136482|ref|XP_002326871.1| predicted protein [Populus trichocarpa]
 gi|222835186|gb|EEE73621.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 223/564 (39%), Positives = 331/564 (58%), Gaps = 5/564 (0%)

Query: 27  ILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPS 86
           +L+   T K   Q+HAL ++  +  +  I ++ ++      +++  +AR +FD       
Sbjct: 8   LLQRCRTRKTLLQIHALILRNAIDANVNILTKFITTC--GQLSSTRHARHLFDNRSHRGD 65

Query: 87  LVLYNLLIKCYVFNQRSHEALTLFCDLL-DRFLLPDNFTLPCVIKGAARLGAIKEGKQIH 145
             L N +IK +V  ++  +A TL+ DL  +   +PDNFT   + K  A   A+ EG + H
Sbjct: 66  TFLCNSMIKSHVVMRQLADAFTLYKDLRRETCFVPDNFTFTVLAKCCALRMAVWEGLETH 125

Query: 146 GLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVE 205
           G V K+GF FD +V ++LV MYAKFG + L R+VF+ M D+ LVSW  LI GYV++G++ 
Sbjct: 126 GHVVKIGFCFDMYVSTALVDMYAKFGNLGLARKVFNDMPDRSLVSWTALIGGYVRRGDMG 185

Query: 206 VAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGD 265
            A  LF  MP RD  ++  L+DG+ K G +E AR +F  MP RN++SW +MI GY   GD
Sbjct: 186 NAWFLFKLMPGRDSAAFNLLIDGYVKVGDMESARSLFDEMPERNVISWTSMIYGYCNNGD 245

Query: 266 VDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL-PNDATLVSALS 324
           V SA  LFD M  ++L++WN+MI GY  N +  EAL+L   +    V  PN+ T+VS L 
Sbjct: 246 VLSARFLFDAMPEKNLVSWNAMIGGYCQNKQPHEALKLFRELQSSTVFEPNEVTVVSILP 305

Query: 325 AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGH 384
           A+A L  L  G W+H ++ +        + T L+ MY KCG I  A  VF  I KK+   
Sbjct: 306 AIATLGALELGEWVHRFVQRKKLDAAVNVCTSLVDMYLKCGEISKARKVFSEIPKKETAT 365

Query: 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMI 444
           W A+I G  M+G+A++AL+ F++M + G+KP  IT  GVL+ACSH GLV +G+  F  MI
Sbjct: 366 WNALINGFAMNGLASEALEAFSEMQQEGIKPNDITMTGVLSACSHGGLVEEGKGQFKAMI 425

Query: 445 NDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIG 504
            + G+ P IEHYGCLVD+L R G L+EA++ I+SMP   N +I  S         +    
Sbjct: 426 -ESGLSPKIEHYGCLVDLLGRAGCLDEAENLIKSMPFEANGIILSSFSFACGFSNDVTRA 484

Query: 505 EYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGV 564
           +   N  + + P   G YV++ N+YA   +W  V E+  +M++RG +K+ GSS+IE    
Sbjct: 485 QRVLNQAVNMEPGNNGIYVMMRNLYAMEERWKDVKEINGLMRRRGAKKEVGSSAIEVDSR 544

Query: 565 LHEFVVGDKSHPQTDEIHSKLSEM 588
           + EF+ G  +HPQ D I S + ++
Sbjct: 545 VSEFISGGIAHPQLDVIESVIGQL 568


>gi|357496515|ref|XP_003618546.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355493561|gb|AES74764.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 637

 Score =  410 bits (1055), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 263/672 (39%), Positives = 371/672 (55%), Gaps = 88/672 (13%)

Query: 35  KETQQLHALSVKTNLIYHSG--ISSRLLSLYVDPHINNLHYARSIFDRILQ-HPSLVLYN 91
           +  QQLHA ++ T LI      + + LL LY    + +  +AR +FD I Q H   V Y 
Sbjct: 37  RPGQQLHATAIVTGLISSPNHFLRNALLHLYGSCSLPS--HARKLFDEIPQSHKDSVDYT 94

Query: 92  LLIK-CYVFNQRSHEALTLFCDLLDRFLLP-DNFTLPCVIKGAARLGA--IKEGKQIHGL 147
            LI+ C  F     E+L LF  +  +F LP D   + C +   ARLG    K G Q+H  
Sbjct: 95  ALIRHCPPF-----ESLKLFIQM-RQFDLPLDGVVMVCALNACARLGGGDTKVGSQMHVG 148

Query: 148 VFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVA 207
           V K GF               KF ++                  N L++ YVK G V  A
Sbjct: 149 VVKFGF--------------VKFDKV-----------------CNALMNVYVKFGLVGEA 177

Query: 208 MKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVD 267
            K+F+                      +E+          R++VSW+  + G +K   V+
Sbjct: 178 RKMFE---------------------GIEV----------RSVVSWSCFLEGLVKWESVE 206

Query: 268 SACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIG-DVLPNDATLVSALSAV 326
           S   LFD+M  R+ + W  MI GY  NG   EA  LL+ M+ G     +  TL S LSA 
Sbjct: 207 SGRVLFDEMPERNEVAWTVMIVGYVGNGFTKEAFLLLKEMVFGCGFRLSFVTLCSVLSAC 266

Query: 327 AGLAVLNKGRWMHSYIVKNGFVVDGVL-GTLLIQMYSKCGSIESALTVFRAISKKKVGHW 385
           +    +  GRW+H Y VK   +  GV+ GT L+ MY+KCG I +AL+VFR++ K+ V  W
Sbjct: 267 SQSGDVCVGRWVHCYAVKEMGLDFGVMVGTSLVDMYAKCGRINAALSVFRSMLKRNVVAW 326

Query: 386 TAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN 445
            AM+ GL MHGM   A+D+F  M    +KP  +TF+ +L+ACSH+GLV  G  YF+ +  
Sbjct: 327 NAMLGGLAMHGMGKIAVDMFPSMVE-EVKPDGVTFMALLSACSHSGLVEKGWDYFHDLEP 385

Query: 446 DYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGE 505
            Y I+P IEHY C+V +L R G LEEA+  +++M + PN V+  SL+     HG   +GE
Sbjct: 386 VYRIKPEIEHYACMVGLLGRAGRLEEAEIMVKNMRIPPNEVVLGSLIGSCYAHGRLQLGE 445

Query: 506 YAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVL 565
               +L+++ P     ++VLSN+YA +G+ +K + +R+++KKRG +K PG SSI   G L
Sbjct: 446 KIMRDLLEMDPLNTEYHIVLSNMYALSGKVEKANSLRQVLKKRGIKKVPGMSSIYVDGKL 505

Query: 566 HEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTT-QVLL-------CIEDQKEKEAE 617
           H+F+ GDKSH +T EI+ KL EM  +L++AG+VP+T+ QVL        C E  +E E  
Sbjct: 506 HQFIAGDKSHTRTSEIYMKLDEMICRLRSAGYVPNTSCQVLFGCSNRDDCSESLEEVEQV 565

Query: 618 LENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHH 677
           L  HSE+LA+ FGL++  S SP+ I KNLR+C DCHS  K+ S +Y REI+VRD  RFH 
Sbjct: 566 LFTHSEKLALCFGLMSTPSGSPLHIFKNLRICQDCHSAIKIASKVYKREIVVRDRYRFHS 625

Query: 678 FKNGSCSCKDFW 689
           FK+GSCSC D+W
Sbjct: 626 FKHGSCSCSDYW 637


>gi|449460574|ref|XP_004148020.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Cucumis sativus]
          Length = 816

 Score =  410 bits (1055), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 223/660 (33%), Positives = 361/660 (54%), Gaps = 13/660 (1%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYV 98
           Q+H   +K    Y+  + + L+  Y   H   L+ A  +F  +L   + V +N L+  Y 
Sbjct: 161 QIHTHVIKLGYEYNLMVCNSLVDAYCKTHC--LYLASQLFKHMLNKDT-VTFNSLMTGYS 217

Query: 99  FNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKF 158
               + EA+ LF +L +  + P +FT   ++  A  L   K G+Q+HG V K  F ++ F
Sbjct: 218 NEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVF 277

Query: 159 VLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP--- 215
           V ++L+  Y+K  ++D   ++F  M + D +S+N +I  Y   G+ + +  LF ++    
Sbjct: 278 VGNALLDYYSKHDQVDEVGKLFYEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTR 337

Query: 216 -DRDLFSWTCLVDGFSKCGKVEIAREIFYRM----PNRNLVSWNAMINGYMKAGDVDSAC 270
            DR  F +  L+   +    + + R+I  +      N      NA+++ Y K      A 
Sbjct: 338 FDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQ 397

Query: 271 ELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLA 330
           ++FD++  +  + W +MI+ Y   G+  E + +   M    V  + AT  S L A A LA
Sbjct: 398 KIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLA 457

Query: 331 VLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIV 390
            ++ GR +HS ++++GF+ +   G+ L+  Y+KCG +  A+  F  + ++    W A+I 
Sbjct: 458 SISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNSVSWNALIS 517

Query: 391 GLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIE 450
               +G     L+ F +M + G KP +++F+ VL+ACSH G V +   +FN M   Y + 
Sbjct: 518 AYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLSACSHCGFVEEALWHFNSMTQIYEVT 577

Query: 451 PTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANN 510
           P  EHY  +VD+LCR G  +EA+  +  MP  P+ ++W S+L+  R H N ++ + AA+ 
Sbjct: 578 PKREHYTSMVDVLCRNGRFDEAEKLMTEMPFEPSEIMWSSVLNSCRIHKNHELAKKAADR 637

Query: 511 LIKVAP-DTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFV 569
           L  +        Y+ +SNIYA AGQWD V++V++ M+ RG RK P  S +E +   H F 
Sbjct: 638 LFNMEDLRDAAPYINMSNIYAVAGQWDNVAKVKKAMRDRGVRKVPAYSWVEIKHQTHVFS 697

Query: 570 VGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAF 629
             DKSHP+  +I  K++ +  +++  G+ PDTT  L  + D+  K   L+ HSER AIAF
Sbjct: 698 ANDKSHPEMKKILRKINALSKEMEKKGYKPDTTCALHDV-DEVIKIESLKYHSERFAIAF 756

Query: 630 GLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            L+N    SPI ++KNLR C DCH+  K++S I  REIIVRD+SRFHHFK+G CSC D+W
Sbjct: 757 ALMNTPDGSPIVVMKNLRACTDCHAAIKVISQIVEREIIVRDSSRFHHFKDGVCSCGDYW 816



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 135/508 (26%), Positives = 238/508 (46%), Gaps = 23/508 (4%)

Query: 60  LSLYVDPHIN--NLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRF 117
           L++ +  H+    L  AR +FD +++  + V + +LI  Y+ + +S EA  L+ D+    
Sbjct: 77  LNMMISGHLKFGKLSKARELFDGMVERTA-VSWTILIGGYLQSNQSKEAFRLYADMRRGG 135

Query: 118 LLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGR 177
           + PD  TL  ++ G   L       QIH  V KLG+ ++  V +SLV  Y K   + L  
Sbjct: 136 IEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLAS 195

Query: 178 RVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCG 233
           ++F  M +KD V++N L+ GY  +G  E A++LF E+ +  +    F++  L+       
Sbjct: 196 QLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLD 255

Query: 234 KVEIAREIFYRMPNRNLVSW-----NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMI 288
             +  +++   +   N V W     NA+++ Y K   VD   +LF +M   D I++N +I
Sbjct: 256 DTKFGQQVHGFVLKTNFV-WNVFVGNALLDYYSKHDQVDEVGKLFYEMPELDGISYNVVI 314

Query: 289 AGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFV 348
             Y  NG+F E+ +L   +             + LS       L  GR +H   +  G  
Sbjct: 315 TSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGAN 374

Query: 349 VDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKM 408
            +  +   L+ MY+KC   + A  +F  I+ K    WTAMI      G   + +++F+ M
Sbjct: 375 FESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDM 434

Query: 409 CRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGY 468
            R G+     TF  +L AC++   ++ GR+  +++I   G    +     L+D   + G 
Sbjct: 435 RRTGVPADQATFASILRACANLASISLGRQLHSLLIRS-GFMSNVYSGSALLDTYAKCGC 493

Query: 469 LEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVA--PDTIGCYVVLS 526
           + +A  +   MP R N V W +L+S    +GN D    +   +I+    PD++    VLS
Sbjct: 494 MTDAIKSFGEMPER-NSVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLS 552

Query: 527 N------IYAAAGQWDKVSEVREMMKKR 548
                  +  A   ++ ++++ E+  KR
Sbjct: 553 ACSHCGFVEEALWHFNSMTQIYEVTPKR 580



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 112/458 (24%), Positives = 179/458 (39%), Gaps = 130/458 (28%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLY-----VDPHINNLHYARSIFDRILQHPSLVLYNL 92
           QQ+H   +KTN +++  + + LL  Y     VD  +  L Y     D I        YN+
Sbjct: 261 QQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVD-EVGKLFYEMPELDGI-------SYNV 312

Query: 93  LIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLG 152
           +I  Y +N +  E+  LF  L         F    ++  A     ++ G+QIH     +G
Sbjct: 313 VITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVG 372

Query: 153 FGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFD 212
             F+  V ++LV MYAK       +++FD +  K  V W  +I  YV+KG+ E  + +F 
Sbjct: 373 ANFESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFS 432

Query: 213 EM------PDR---------------------------------DLFSWTCLVDGFSKCG 233
           +M       D+                                 +++S + L+D ++KCG
Sbjct: 433 DMRRTGVPADQATFASILRACANLASISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCG 492

Query: 234 KVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYEL 293
            +  A + F  MP RN VSWNA+I+ Y + G+VD     F  M          + +GY+ 
Sbjct: 493 CMTDAIKSFGEMPERNSVSWNALISAYAQNGNVDGTLNSFQQM----------IQSGYK- 541

Query: 294 NGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVL 353
                               P+  + +S LSA                            
Sbjct: 542 --------------------PDSVSFLSVLSAC--------------------------- 554

Query: 354 GTLLIQMYSKCGSIESALTVFRAISK-----KKVGHWTAMIVGLGMHGMATQALDLFNKM 408
                   S CG +E AL  F ++++      K  H+T+M+  L  +G   +A  L   M
Sbjct: 555 --------SHCGFVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFDEAEKL---M 603

Query: 409 CRMGMKPTAITFIGVLNAC----SHAGLVNDGRRYFNM 442
             M  +P+ I +  VLN+C    +H        R FNM
Sbjct: 604 TEMPFEPSEIMWSSVLNSCRIHKNHELAKKAADRLFNM 641



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 93/401 (23%), Positives = 175/401 (43%), Gaps = 43/401 (10%)

Query: 144 IHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGE 203
           I   + K GF  +    +  V+ + + G++    +VFD M  K+ +S N +I G++K G+
Sbjct: 30  IDAHIVKTGFNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGK 89

Query: 204 VEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM------PN---------- 247
           +  A +LFD M +R   SWT L+ G+ +  + + A  ++  M      P+          
Sbjct: 90  LSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSG 149

Query: 248 -----------------------RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITW 284
                                   NL+  N++++ Y K   +  A +LF  M  +D +T+
Sbjct: 150 FGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTF 209

Query: 285 NSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVK 344
           NS++ GY   G   EA+EL   +    + P+D T  + LSA  GL     G+ +H +++K
Sbjct: 210 NSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLK 269

Query: 345 NGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDL 404
             FV +  +G  L+  YSK   ++    +F  + +     +  +I     +G   ++ DL
Sbjct: 270 TNFVWNVFVGNALLDYYSKHDQVDEVGKLFYEMPELDGISYNVVITSYAWNGQFKESFDL 329

Query: 405 FNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN-DYGIEPTIEHYGCLVDIL 463
           F K+           F  +L+  + +  +  GR+     I      E  +E+   LVD+ 
Sbjct: 330 FRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVEN--ALVDMY 387

Query: 464 CRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIG 504
            +    +EA+   +++  +   V W +++S     G  + G
Sbjct: 388 AKCNGDKEAQKIFDNIACKST-VPWTAMISAYVQKGKHEEG 427


>gi|113205417|gb|AAU90328.2| Pentatricopeptide repeat domain containing protein, putative
           [Solanum demissum]
          Length = 819

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 230/672 (34%), Positives = 371/672 (55%), Gaps = 21/672 (3%)

Query: 31  SSTHKETQQLHALSVKTNLIYHSGISSRLLSL--YVDPHINN--LHYARSIFDRILQHPS 86
           ++T KE  Q+H+  ++       G S+ L+     VD +     L  A  +F  +    S
Sbjct: 156 TTTLKEVLQIHSHIIRF------GFSASLIVFNSLVDSYCKTCCLDIASQLFSEMPTKDS 209

Query: 87  LVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHG 146
            V +N++I  Y       EAL LF  + +    P  FT   ++  +     +  G+QIHG
Sbjct: 210 -VSFNVMITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAMLGMSVGSEDVIFGQQIHG 268

Query: 147 LVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEV 206
           L  K  + +D FV ++L+  Y+K   IDL + +FD M + D VS+N +I GY   G+ E 
Sbjct: 269 LAIKTSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGYAWNGQYEK 328

Query: 207 AMKLFDEMP----DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS----WNAMIN 258
           +  LF  +     DR  F +  ++   +    + + R+   +      VS     NA+++
Sbjct: 329 SFDLFKRLQGTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQAVVTTAVSEVQVGNALVD 388

Query: 259 GYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDAT 318
            Y K    + A  +F ++  R+ + W ++I+ Y   G   EAL++ + M   +V  + AT
Sbjct: 389 MYAKCEKFEDANRIFANLAYRNSVPWTAIISIYVQKGFHEEALKMFKEMNRENVHGDQAT 448

Query: 319 LVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS 378
             S L A A LA ++ G+ +HS +++ G +     G++L+ MY+ CGS++ A+ VF+ + 
Sbjct: 449 FASTLKASANLASVSLGKQLHSSVIRLGLLSSVFSGSVLVDMYANCGSMKDAIEVFKEMP 508

Query: 379 KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR 438
            + +  W A+I     +G A      F  M   G+ P +++F+ VL ACSH GLV     
Sbjct: 509 DRNIVCWNALISAYSQNGDAEATFSSFADMIESGLYPDSVSFLSVLTACSHRGLVEKALW 568

Query: 439 YFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNH 498
           YFN M   Y ++P  +HY  ++D+LCR+G   EA++ I  MP  P+ V+W S+L+  R H
Sbjct: 569 YFNSMTQVYKLDPRRKHYATMIDVLCRSGRFNEAENLISEMPFEPDEVMWSSVLNSCRIH 628

Query: 499 GNKDIGEYAANNLIKV-APDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSS 557
            N+D+ + AA+ L K+ A      YV +SNIYA AG+W+  ++V++ M++RG +K    S
Sbjct: 629 KNQDLAKKAADQLFKMDALRDAAAYVNMSNIYAEAGKWENAAKVKKAMRERGVKKVTAYS 688

Query: 558 SIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAE 617
            +E    +H F   D++HPQT++I  K++ +   +   G+ PDT+  L  ++++ + E+ 
Sbjct: 689 WVEIDHRVHVFTANDRTHPQTEQIRRKINSLVELMDKEGYKPDTSCTLQNVDEEMKIES- 747

Query: 618 LENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHH 677
           L+ HSERLAIAF LIN    SPI I+KNLR C DCH+  K++S I  REI VRD+SRFHH
Sbjct: 748 LKYHSERLAIAFALINTPEGSPIIIMKNLRACVDCHAAIKVISKIVGREITVRDSSRFHH 807

Query: 678 FKNGSCSCKDFW 689
           F++GSCSC D+W
Sbjct: 808 FRDGSCSCGDYW 819



 Score =  173 bits (439), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 130/479 (27%), Positives = 229/479 (47%), Gaps = 17/479 (3%)

Query: 59  LLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFL 118
           ++S YV     NL  AR +F+ +      V + ++I  Y  N +  EA  L+ ++    +
Sbjct: 83  MVSGYVKSR--NLFRARELFESMFSRNE-VSWTIMIGGYSQNNQPKEAFNLYTEMCRSGV 139

Query: 119 LPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRR 178
            PD+ T   ++ G      +KE  QIH  + + GF     V +SLV  Y K   +D+  +
Sbjct: 140 KPDHITFATLLSGFDDTTTLKEVLQIHSHIIRFGFSASLIVFNSLVDSYCKTCCLDIASQ 199

Query: 179 VFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGK 234
           +F  M  KD VS+N +I GY K G  E A+KLF +M + D     F++  ++ G S   +
Sbjct: 200 LFSEMPTKDSVSFNVMITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAML-GMSVGSE 258

Query: 235 VEIAREIFYRMPNRNLVSW-----NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIA 289
             I  +  + +  +    W     NA+++ Y K   +D A  LFD+M   D +++N +I 
Sbjct: 259 DVIFGQQIHGLAIKTSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIIT 318

Query: 290 GYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVV 349
           GY  NG++ ++ +L + +        +    + LS  A    L+ GR  H+  V    V 
Sbjct: 319 GYAWNGQYEKSFDLFKRLQGTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQAVVTTAVS 378

Query: 350 DGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMC 409
           +  +G  L+ MY+KC   E A  +F  ++ +    WTA+I      G   +AL +F +M 
Sbjct: 379 EVQVGNALVDMYAKCEKFEDANRIFANLAYRNSVPWTAIISIYVQKGFHEEALKMFKEMN 438

Query: 410 RMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYL 469
           R  +     TF   L A ++   V+ G++  + +I   G+  ++     LVD+    G +
Sbjct: 439 RENVHGDQATFASTLKASANLASVSLGKQLHSSVIR-LGLLSSVFSGSVLVDMYANCGSM 497

Query: 470 EEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIK--VAPDTIGCYVVLS 526
           ++A    + MP R N V W +L+S    +G+ +    +  ++I+  + PD++    VL+
Sbjct: 498 KDAIEVFKEMPDR-NIVCWNALISAYSQNGDAEATFSSFADMIESGLYPDSVSFLSVLT 555



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 119/250 (47%), Gaps = 1/250 (0%)

Query: 231 KCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAG 290
           +  ++  AR++F  MP RN  S N M++GY+K+ ++  A ELF+ M  R+ ++W  MI G
Sbjct: 58  RANQIAKARQLFDEMPYRNTSSVNMMVSGYVKSRNLFRARELFESMFSRNEVSWTIMIGG 117

Query: 291 YELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVD 350
           Y  N +  EA  L   M    V P+  T  + LS       L +   +HS+I++ GF   
Sbjct: 118 YSQNNQPKEAFNLYTEMCRSGVKPDHITFATLLSGFDDTTTLKEVLQIHSHIIRFGFSAS 177

Query: 351 GVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCR 410
            ++   L+  Y K   ++ A  +F  +  K    +  MI G   +G   +AL LF +M  
Sbjct: 178 LIVFNSLVDSYCKTCCLDIASQLFSEMPTKDSVSFNVMITGYTKYGFREEALKLFMQMRN 237

Query: 411 MGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLE 470
           M  +P+  TF  +L     +  V  G++   + I    +   I     L+D   +  Y++
Sbjct: 238 MDFQPSGFTFAAMLGMSVGSEDVIFGQQIHGLAIKTSYVWD-IFVANALLDFYSKHDYID 296

Query: 471 EAKSTIESMP 480
            AK+  + MP
Sbjct: 297 LAKNLFDEMP 306


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 231/629 (36%), Positives = 355/629 (56%), Gaps = 18/629 (2%)

Query: 74  ARSIFDRILQHPSL--VLYNLLIKCYVFNQRSHEALTLFCDLL--DRFLLPDNFTLPCVI 129
           AR +FDR+   PS   V +N ++  Y  N     A+     +   +    PD+ TL  V+
Sbjct: 70  ARRVFDRM---PSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVL 126

Query: 130 KGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLV 189
              A   A+   +++H    + G      V ++++  Y K G ++  R VFD M  ++ V
Sbjct: 127 PACADARALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSV 186

Query: 190 SWNCLIDGYVKKGEVEVAMKLFDEMPDRDL-FSWTCLVDGFSKCGKV----EIAR--EIF 242
           SWN +IDGY   G    AM LF  M    +  +   ++     CG++    E+ R  E+ 
Sbjct: 187 SWNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELL 246

Query: 243 YRMP-NRNLVSWNAMINGYMKAGDVDSACELFDDM-EIRDLITWNSMIAGYELNGRFMEA 300
            R+  + N+   NA+I  Y K    D A ++F+++   +  I+WN+MI G+  N    +A
Sbjct: 247 VRVGLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDA 306

Query: 301 LELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQM 360
             L   M + +V P+  TLVS + AVA ++   + RW+H Y +++    D  + T LI M
Sbjct: 307 ERLFARMQLENVRPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQDVYVLTALIDM 366

Query: 361 YSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITF 420
           YSKCG +  A  +F +   + V  W AMI G G HG    A++LF +M   G  P   TF
Sbjct: 367 YSKCGRVSIARRLFDSARDRHVITWNAMIHGYGSHGFGQAAVELFEEMKGTGSLPNETTF 426

Query: 421 IGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP 480
           + VL ACSHAGLV++G++YF  M  DYG+EP +EHYG +VD+L R G L+EA S I++MP
Sbjct: 427 LSVLAACSHAGLVDEGQKYFASMKKDYGLEPGMEHYGTMVDLLGRAGKLDEAWSFIKNMP 486

Query: 481 MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSE 540
           + P   ++ ++L   + H N ++ E +A  + ++ P+    +V+L+NIYA A  W  V+ 
Sbjct: 487 IEPGISVYGAMLGACKLHKNVELAEESAQIIFELGPEEGVYHVLLANIYANASMWKDVAR 546

Query: 541 VREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPD 600
           VR  M+K+G +K PG S I+ +  +H F  G  +H    +I+++L+++  ++K  G+VPD
Sbjct: 547 VRTAMEKKGLQKTPGWSIIQLKNEVHTFYSGSTNHQHAKDIYARLAKLIEEIKDMGYVPD 606

Query: 601 TTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLS 660
           T  +    +D K +   L  HSE+LAIA+GLI     + I+I KNLRVCNDCH+ TKL+S
Sbjct: 607 TDSIHDVEDDVKAQ--LLNTHSEKLAIAYGLIRTAPGTTIQIKKNLRVCNDCHNATKLIS 664

Query: 661 GIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            +  REII+RD  RFHHFK+G CSC D+W
Sbjct: 665 LLTGREIIMRDIQRFHHFKDGKCSCGDYW 693



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 107/422 (25%), Positives = 172/422 (40%), Gaps = 83/422 (19%)

Query: 124 TLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAM 183
           T   ++K  A    +  G+ +H  +   G   +    ++L +MY K       RRVFD M
Sbjct: 18  TFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRVFDRM 77

Query: 184 DDKDLVSWNCLIDGYVKKGEVEVAMKLF--------DEMPD------------------- 216
             +D V+WN ++ GY + G    AM+           E PD                   
Sbjct: 78  PSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADARALHA 137

Query: 217 -RDLFSW-------------TCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMK 262
            R++ ++             T ++D + KCG VE AR +F  MP RN VSWNAMI+GY  
Sbjct: 138 CREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGYAD 197

Query: 263 AGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSA 322
                                          NG   EA+ L   M+   V   DA++++A
Sbjct: 198 -------------------------------NGNATEAMALFWRMVQEGVDVTDASVLAA 226

Query: 323 LSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKV 382
           L A   L  L++ R +H  +V+ G   +  +   LI  Y+KC   + A  VF  +  KK 
Sbjct: 227 LQACGELGYLDEVRRVHELLVRVGLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKKT 286

Query: 383 G-HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFN 441
              W AMI+G   +     A  LF +M    ++P + T + V+ A +        R    
Sbjct: 287 RISWNAMILGFTQNECPEDAERLFARMQLENVRPDSFTLVSVIPAVADISDPLQAR---- 342

Query: 442 MMINDYGIEPTIEH----YGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARN 497
             I+ Y I   ++        L+D+  + G +  A+   +S   R + + W +++ G  +
Sbjct: 343 -WIHGYSIRHQLDQDVYVLTALIDMYSKCGRVSIARRLFDSARDR-HVITWNAMIHGYGS 400

Query: 498 HG 499
           HG
Sbjct: 401 HG 402


>gi|125554650|gb|EAZ00256.1| hypothetical protein OsI_22267 [Oryza sativa Indica Group]
          Length = 602

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 196/441 (44%), Positives = 283/441 (64%), Gaps = 1/441 (0%)

Query: 249 NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETML 308
           ++VSW  M+ G  + G VD A E+FD M  R+L++WNSMI+GY    RF++ALE+ + M 
Sbjct: 163 DVVSWTTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDEMR 222

Query: 309 IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIE 368
              V  N     SAL A  G   L +GR ++ ++ ++G  VD  L T ++ MY KCG ++
Sbjct: 223 ALGVEGNGFVATSALVACTGAGALGRGREIYRWVEQSGIEVDAKLATAVVDMYCKCGCVD 282

Query: 369 SALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACS 428
            A  VF ++  + +  W  MI G  +HG    AL+LF++M   G+ P  +T + VL AC+
Sbjct: 283 EAWRVFDSLPARGLTTWNCMIGGFAVHGRCDDALELFHQMEAAGVAPDDVTLLNVLTACA 342

Query: 429 HAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIW 488
           HAG V++GRRY N +++ +GIEP  EHYGC+VD+  R G L+EAK  I+ MPM P+  + 
Sbjct: 343 HAGEVSEGRRYLNHIVSRHGIEPKGEHYGCMVDLFGRAGQLDEAKKVIDEMPMDPDLAVL 402

Query: 489 MSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548
            +LL   + HG+ D+GE     +I + PD  G YV+L+N+ A AG+WD+V +VR +M +R
Sbjct: 403 GALLGACKIHGDVDLGEAIGWRVIDLDPDNSGRYVLLANLLAGAGRWDEVGKVRRLMDER 462

Query: 549 GFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCI 608
              K+ G S IE  G   EF  G+  HPQ  EI++   +M ++++A G+VPDT + L  +
Sbjct: 463 NVSKEAGRSVIEVDGEACEFRCGNLRHPQAREIYAMAVDMVSRIRAEGYVPDTGEALHDV 522

Query: 609 EDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREII 668
            ++ +KEA L  HSE+LAIAFGL+  + R  +RI KNLRVC DCH  TK +S ++ REI+
Sbjct: 523 AEE-DKEAALLCHSEKLAIAFGLLRARPRETLRITKNLRVCRDCHEATKYVSRVFGREIV 581

Query: 669 VRDNSRFHHFKNGSCSCKDFW 689
           VRD SRFHHFK+G CSCKD+W
Sbjct: 582 VRDRSRFHHFKDGMCSCKDYW 602



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 111/263 (42%), Gaps = 71/263 (26%)

Query: 152 GFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLF 211
           G   D    +++V    + G +D  R VFDAM  ++LVSWN +I GYVK      A+++F
Sbjct: 159 GGALDVVSWTTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVF 218

Query: 212 DEM--------------------------PDRDLFSW-------------TCLVDGFSKC 232
           DEM                            R+++ W             T +VD + KC
Sbjct: 219 DEMRALGVEGNGFVATSALVACTGAGALGRGREIYRWVEQSGIEVDAKLATAVVDMYCKC 278

Query: 233 GKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYE 292
           G V+ A  +F  +P R L +WN MI G+   G  D A ELF  ME           AG  
Sbjct: 279 GCVDEAWRVFDSLPARGLTTWNCMIGGFAVHGRCDDALELFHQME----------AAG-- 326

Query: 293 LNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIV-KNGFVVDG 351
                              V P+D TL++ L+A A    +++GR   ++IV ++G    G
Sbjct: 327 -------------------VAPDDVTLLNVLTACAHAGEVSEGRRYLNHIVSRHGIEPKG 367

Query: 352 VLGTLLIQMYSKCGSIESALTVF 374
                ++ ++ + G ++ A  V 
Sbjct: 368 EHYGCMVDLFGRAGQLDEAKKVI 390



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 117/237 (49%), Gaps = 21/237 (8%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           AR +FD +    +LV +N +I  YV   R  +AL +F ++    +  + F     +    
Sbjct: 183 AREVFDAMPAR-NLVSWNSMISGYVKADRFLDALEVFDEMRALGVEGNGFVATSALVACT 241

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
             GA+  G++I+  V + G   D  + +++V MY K G +D   RVFD++  + L +WNC
Sbjct: 242 GAGALGRGREIYRWVEQSGIEVDAKLATAVVDMYCKCGCVDEAWRVFDSLPARGLTTWNC 301

Query: 194 LIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKC---GKVEIAREIFYR 244
           +I G+   G  + A++LF +M      PD        L++  + C   G+V   R     
Sbjct: 302 MIGGFAVHGRCDDALELFHQMEAAGVAPDD-----VTLLNVLTACAHAGEVSEGRRYLNH 356

Query: 245 MPNRNLVS-----WNAMINGYMKAGDVDSACELFDDMEI-RDLITWNSMIAGYELNG 295
           + +R+ +      +  M++ + +AG +D A ++ D+M +  DL    +++   +++G
Sbjct: 357 IVSRHGIEPKGEHYGCMVDLFGRAGQLDEAKKVIDEMPMDPDLAVLGALLGACKIHG 413


>gi|296089956|emb|CBI39775.3| unnamed protein product [Vitis vinifera]
          Length = 599

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/489 (42%), Positives = 305/489 (62%), Gaps = 7/489 (1%)

Query: 207 AMKLFD--EMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLV----SWNAMINGY 260
           A ++F   E    + F W   +   ++      A  +FYR+   ++     + ++++   
Sbjct: 112 AQQIFKCVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRAC 171

Query: 261 MKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLV 320
           +   D+ +   L   +E     +W SMIAGY   G+  EA+ L   M    V  N+ T+V
Sbjct: 172 LNLLDLSNGRILHGVVEKVGFRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVV 231

Query: 321 SALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKK 380
           + L+A A L  L+ G  +H Y  ++GF  +  +   LI MY KCG +E A  VF  + ++
Sbjct: 232 AVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEER 291

Query: 381 KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYF 440
            V  W+AMI GL MHG A +AL LF+ M ++G++P  +TFIG+L+ACSH GL+++GRR+F
Sbjct: 292 TVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFF 351

Query: 441 NMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGN 500
             M  DYGI P IEHYGC+VD+L R G L EA   I +MPM+PN V+W +LL   R H N
Sbjct: 352 ASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKN 411

Query: 501 KDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIE 560
            ++ E A  +L+++ P   G YVVLSNIYA AG+W+  + VR+ MK R  +K PG SSI 
Sbjct: 412 VEMAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSIT 471

Query: 561 HRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELEN 620
             GV+HEFV G++SHP T++I  +  E+  +++  G+VP+T+ VLL IE + EK   +  
Sbjct: 472 VDGVVHEFVAGEESHPDTEQIFQRWEELLEEMRLKGYVPNTSVVLLDIE-EGEKVKFVSR 530

Query: 621 HSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKN 680
           HSE+LA+ FGL+N  + +PIRI+KNLR+C DCHS  KL+S I NREI+VRD +RFH F +
Sbjct: 531 HSEKLALVFGLMNTPAETPIRIMKNLRICEDCHSAFKLISAIVNREIVVRDRNRFHCFND 590

Query: 681 GSCSCKDFW 689
            SCSC+D+W
Sbjct: 591 NSCSCRDYW 599



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 100/436 (22%), Positives = 182/436 (41%), Gaps = 62/436 (14%)

Query: 12  IHALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRL-LSLYVDPHINN 70
           IH ++      L  ++L+  ++  E +Q+HA  +KTN        +R+ L     P   +
Sbjct: 52  IHNVKPQSSETLKIDLLRNFNSPFELRQVHAQIIKTNAPLSILPLTRVGLVCAFTP---S 108

Query: 71  LHYARSIFDRI-LQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVI 129
            HYA+ IF  +  Q P   ++N  +K         +A+ LF  L    + PD FT   V+
Sbjct: 109 FHYAQQIFKCVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVL 168

Query: 130 KGAARLGAIKEGKQIHGLVFKLGF--------GF-----------------------DKF 158
           +    L  +  G+ +HG+V K+GF        G+                       ++ 
Sbjct: 169 RACLNLLDLSNGRILHGVVEKVGFRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEV 228

Query: 159 VLSSLVSMYAKFGEIDLGRRVFDAMD----DKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
            + ++++  A  G +DLG R+ +  +     +++   N LID YVK G +E A K+F+EM
Sbjct: 229 TVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEM 288

Query: 215 PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPN----RNLVSWNAMINGYMKAGDVDSAC 270
            +R + SW+ ++ G +  G+ E A  +F  M       N V++  +++     G +    
Sbjct: 289 EERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGR 348

Query: 271 ELFDDME-----IRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSA 325
             F  M      I  +  +  M+      G   EA E +  M +    PN         A
Sbjct: 349 RFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMK---PNGVV----WGA 401

Query: 326 VAGLAVLNKGRWMHSYIVKNGFVVDGV---LGTLLIQMYSKCGSIESALTVFRAISK--- 379
           + G   ++K   M    +K+   +D +      +L  +Y++ G  E    V + +     
Sbjct: 402 LLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQV 461

Query: 380 KKVGHWTAMIVGLGMH 395
           KK   W+++ V   +H
Sbjct: 462 KKTPGWSSITVDGVVH 477


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 223/612 (36%), Positives = 339/612 (55%), Gaps = 74/612 (12%)

Query: 112 DLLDR-FLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSL-VSMYAK 169
           DL+ R  L+PD      ++K   RLG +++G+ +H  +    F  +  VL ++ V+MYAK
Sbjct: 76  DLIQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAK 135

Query: 170 FGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGF 229
            G                     CL D          A ++FDEMP +D+ +WT L+ GF
Sbjct: 136 CG---------------------CLDD----------ARRMFDEMPTKDMVTWTALIAGF 164

Query: 230 SKCGKVEIAREIFYRM------PNRNLVS------------------------------- 252
           S+  +   A  +F +M      PN   +S                               
Sbjct: 165 SQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSV 224

Query: 253 --WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIG 310
              +A+++ Y + G +D+A   FD M  +  ++WN++I+G+   G    AL LL  M   
Sbjct: 225 YVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRK 284

Query: 311 DVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESA 370
           +  P   T  S LSA A +  L +G+W+H++++K+G  +   +G  L+ MY+K GSI+ A
Sbjct: 285 NFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDA 344

Query: 371 LTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHA 430
             VF  + K  V  W  M+ G   HG+  + LD F +M R+G++P  I+F+ VL ACSH+
Sbjct: 345 KRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHS 404

Query: 431 GLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMS 490
           GL+++G  YF +M   Y +EP + HY   VD+L R G L+ A+  I  MP+ P   +W +
Sbjct: 405 GLLDEGLYYFELM-KKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGA 463

Query: 491 LLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGF 550
           LL   R H N ++G YAA    ++ P   G  ++LSNIYA+AG+W  V++VR+MMK+ G 
Sbjct: 464 LLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSNIYASAGRWRDVAKVRKMMKESGV 523

Query: 551 RKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIED 610
           +K P  S +E    +H FV  D++HP+  EI  K  E+  K+K  G+VPDT+ VLL + D
Sbjct: 524 KKQPACSWVEIENAVHLFVANDETHPRIKEIRGKWEEISGKIKEIGYVPDTSHVLLFV-D 582

Query: 611 QKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVR 670
           Q+E+E +L+ HSE+LA+AF L+N  + SPIRI KN+RVC DCH+  K +S + +REIIVR
Sbjct: 583 QQEREEKLQYHSEKLALAFALLNTPTGSPIRIKKNIRVCGDCHAAIKFVSKVVDREIIVR 642

Query: 671 DNSRFHHFKNGS 682
           D +RFH F++GS
Sbjct: 643 DTNRFHRFRDGS 654



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 162/331 (48%), Gaps = 10/331 (3%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           AR +FD  +    +V +  LI  +  N R  +AL LF  +L     P++FTL  ++K + 
Sbjct: 142 ARRMFDE-MPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASG 200

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
               +  G Q+H    K G+    +V S+LV MYA+ G +D  +  FD M  K  VSWN 
Sbjct: 201 SEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNA 260

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRM--PN 247
           LI G+ +KGE E A+ L  +M  ++     F+++ ++   +  G +E  + +   M    
Sbjct: 261 LISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSG 320

Query: 248 RNLVSW--NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLE 305
             L+++  N +++ Y KAG +D A  +FD +   D+++WN+M+ G   +G   E L+  E
Sbjct: 321 LKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFE 380

Query: 306 TMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCG 365
            ML   + PN+ + +  L+A +   +L++G +    + K     D       + +  + G
Sbjct: 381 QMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDLLGRVG 440

Query: 366 SIESALTVFRAIS-KKKVGHWTAMIVGLGMH 395
            ++ A    R +  +     W A++    MH
Sbjct: 441 LLDRAERFIREMPIEPTAAVWGALLGACRMH 471



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 136/286 (47%), Gaps = 25/286 (8%)

Query: 237 IAREIFYRMPNRNLVSWNAMINGY-------MKAGDVDSACELFDDMEIRDLITWNSMIA 289
           + R+I  R P     + +A    +       ++ GD  S C +F D   +DL+  +    
Sbjct: 13  VIRKILVRSPPSGFATIHAPAAPFSDSNDSEVEDGDAASFC-VFQD---KDLLRKSQSDG 68

Query: 290 GYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVV 349
           G  L      AL+L++    G ++P+       L     L  + +GR +H+++V + F+ 
Sbjct: 69  GTGL-----YALDLIQR---GSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLD 120

Query: 350 DG-VLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKM 408
           +  VL  +++ MY+KCG ++ A  +F  +  K +  WTA+I G   +     AL LF +M
Sbjct: 121 NHLVLQNIIVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQM 180

Query: 409 CRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGY 468
            R+G +P   T   +L A      ++ G +     +  YG + ++     LVD+  R G+
Sbjct: 181 LRLGFQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLK-YGYQSSVYVGSALVDMYARCGH 239

Query: 469 LEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKV 514
           ++ A+   + MP +   V W +L+SG   H  K  GE+A + L K+
Sbjct: 240 MDAAQLAFDGMPTKSE-VSWNALISG---HARKGEGEHALHLLWKM 281


>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
 gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
          Length = 687

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 235/668 (35%), Positives = 385/668 (57%), Gaps = 25/668 (3%)

Query: 32  STHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYN 91
           + H   + +H  ++   L     +S+ LL +YV      L  A  IF   +    LV +N
Sbjct: 24  ADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVK--CACLPDAAHIF-ATMPARDLVAWN 80

Query: 92  LLIKCYVFNQRSHEALTLFCDLLDRF--LLPDNFTLPCVIKGAARLGAIKEGKQIHGLVF 149
            ++  Y  +   H A+     +  +   L P+  TL  ++   A+ GA+ +G  +H    
Sbjct: 81  AMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCI 140

Query: 150 KLGFGFDK----------FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYV 199
           +     ++           + ++L+ MYAK G +   RRVFDAM  ++ V+W+ LI G+V
Sbjct: 141 RACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFV 200

Query: 200 KKGEVEVAMKLFDEMPDRDL--FSWTCLVDGFSKCGKVEIAR--EIFYRMPNR-----NL 250
               +  A  LF  M  + L   S T +      C  ++  R  E  + +  +     +L
Sbjct: 201 LCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADL 260

Query: 251 VSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIG 310
            + N++++ Y KAG +D A  LFD+M ++D ++++++++GY  NGR  EA  + + M   
Sbjct: 261 TAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQAC 320

Query: 311 DVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESA 370
           +V P+ AT+VS + A + LA L  GR  H  ++  G   +  +   LI MY+KCG I+ +
Sbjct: 321 NVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLS 380

Query: 371 LTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHA 430
             VF  +  + +  W  MI G G+HG+  +A  LF +M  +G  P  +TFI +L+ACSH+
Sbjct: 381 RQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHS 440

Query: 431 GLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMS 490
           GLV +G+ +F++M + YG+ P +EHY C+VD+L R G+L+EA   I+SMP+R +  +W++
Sbjct: 441 GLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVA 500

Query: 491 LLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGF 550
           LL   R + N D+G+  +  + ++ P+  G +V+LSNIY+AAG++D+ +EVR + K +GF
Sbjct: 501 LLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGF 560

Query: 551 RKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIED 610
           +K PG S IE  G LH FV GD+SHPQ+ EI+ +L  +   +K  G+ PDT+ VL  +E+
Sbjct: 561 KKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEE 620

Query: 611 QKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVR 670
           +++++A L  HSE+LAIA+G++++     I + KNLRVC DCH+V K +S +  R IIVR
Sbjct: 621 EEKEKA-LICHSEKLAIAYGILSLSEDKTIFVTKNLRVCGDCHTVIKHISLVKRRAIIVR 679

Query: 671 DNSRFHHF 678
           D +RFHHF
Sbjct: 680 DANRFHHF 687



 Score = 72.4 bits (176), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 87/199 (43%), Gaps = 12/199 (6%)

Query: 307 MLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGS 366
           ML   V PN+ T   AL A + LA  + GR +H + +  G   D  + T L+ MY KC  
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 367 IESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALD--LFNKMCRMGMKPTAITFIGVL 424
           +  A  +F  +  + +  W AM+ G   HGM   A+   L  +M    ++P A T + +L
Sbjct: 61  LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALL 120

Query: 425 NACSHAGLVNDGRRYFNMMI---------NDYGIEPTIEHYGCLVDILCRTGYLEEAKST 475
              +  G +  G       I         +   +   +     L+D+  + G L  A+  
Sbjct: 121 PLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRV 180

Query: 476 IESMPMRPNFVIWMSLLSG 494
            ++MP R N V W +L+ G
Sbjct: 181 FDAMPAR-NEVTWSALIGG 198


>gi|115467246|ref|NP_001057222.1| Os06g0231400 [Oryza sativa Japonica Group]
 gi|51535413|dbj|BAD37283.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595262|dbj|BAF19136.1| Os06g0231400 [Oryza sativa Japonica Group]
 gi|125596589|gb|EAZ36369.1| hypothetical protein OsJ_20697 [Oryza sativa Japonica Group]
          Length = 602

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 196/441 (44%), Positives = 283/441 (64%), Gaps = 1/441 (0%)

Query: 249 NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETML 308
           ++VSW  M+ G  + G VD A E+FD M  R+L++WNSMI+GY    RF++ALE+ + M 
Sbjct: 163 DVVSWTTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDEMR 222

Query: 309 IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIE 368
              V  N     SAL A  G   L +GR ++ ++ ++G  VD  L T ++ MY KCG ++
Sbjct: 223 ALGVEGNGFVATSALVACTGAGALGRGREIYRWVEQSGIEVDAKLATAVVDMYCKCGCVD 282

Query: 369 SALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACS 428
            A  VF ++  + +  W  MI G  +HG    AL+LF++M   G+ P  +T + VL AC+
Sbjct: 283 EAWGVFDSLPARGLTTWNCMIGGFAVHGRCDDALELFHQMEAAGVAPDDVTLLNVLTACA 342

Query: 429 HAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIW 488
           HAG V++GRRY N +++ +GIEP  EHYGC+VD+  R G L+EAK  I+ MPM P+  + 
Sbjct: 343 HAGEVSEGRRYLNHIVSRHGIEPKGEHYGCMVDLFGRAGQLDEAKKVIDEMPMDPDLAVL 402

Query: 489 MSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548
            +LL   + HG+ D+GE     +I + PD  G YV+L+N+ A AG+WD+V +VR +M +R
Sbjct: 403 GALLGACKIHGDVDLGEAIGWRVIDLDPDNSGRYVLLANLLAGAGRWDEVGKVRRLMDER 462

Query: 549 GFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCI 608
              K+ G S IE  G   EF  G+  HPQ  EI++   +M ++++A G+VPDT + L  +
Sbjct: 463 NVSKEAGRSVIEVDGEACEFRCGNLRHPQAREIYAMAVDMVSRIRAEGYVPDTGEALHDV 522

Query: 609 EDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREII 668
            ++ +KEA L  HSE+LAIAFGL+  + R  +RI KNLRVC DCH  TK +S ++ REI+
Sbjct: 523 AEE-DKEAALLCHSEKLAIAFGLLRARPRETLRITKNLRVCRDCHEATKYVSRVFGREIV 581

Query: 669 VRDNSRFHHFKNGSCSCKDFW 689
           VRD SRFHHFK+G CSCKD+W
Sbjct: 582 VRDRSRFHHFKDGMCSCKDYW 602



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 111/263 (42%), Gaps = 71/263 (26%)

Query: 152 GFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLF 211
           G   D    +++V    + G +D  R VFDAM  ++LVSWN +I GYVK      A+++F
Sbjct: 159 GGALDVVSWTTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVF 218

Query: 212 DEM--------------------------PDRDLFSW-------------TCLVDGFSKC 232
           DEM                            R+++ W             T +VD + KC
Sbjct: 219 DEMRALGVEGNGFVATSALVACTGAGALGRGREIYRWVEQSGIEVDAKLATAVVDMYCKC 278

Query: 233 GKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYE 292
           G V+ A  +F  +P R L +WN MI G+   G  D A ELF  ME           AG  
Sbjct: 279 GCVDEAWGVFDSLPARGLTTWNCMIGGFAVHGRCDDALELFHQME----------AAG-- 326

Query: 293 LNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIV-KNGFVVDG 351
                              V P+D TL++ L+A A    +++GR   ++IV ++G    G
Sbjct: 327 -------------------VAPDDVTLLNVLTACAHAGEVSEGRRYLNHIVSRHGIEPKG 367

Query: 352 VLGTLLIQMYSKCGSIESALTVF 374
                ++ ++ + G ++ A  V 
Sbjct: 368 EHYGCMVDLFGRAGQLDEAKKVI 390



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 116/237 (48%), Gaps = 21/237 (8%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           AR +FD +    +LV +N +I  YV   R  +AL +F ++    +  + F     +    
Sbjct: 183 AREVFDAMPAR-NLVSWNSMISGYVKADRFLDALEVFDEMRALGVEGNGFVATSALVACT 241

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
             GA+  G++I+  V + G   D  + +++V MY K G +D    VFD++  + L +WNC
Sbjct: 242 GAGALGRGREIYRWVEQSGIEVDAKLATAVVDMYCKCGCVDEAWGVFDSLPARGLTTWNC 301

Query: 194 LIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKC---GKVEIAREIFYR 244
           +I G+   G  + A++LF +M      PD        L++  + C   G+V   R     
Sbjct: 302 MIGGFAVHGRCDDALELFHQMEAAGVAPDD-----VTLLNVLTACAHAGEVSEGRRYLNH 356

Query: 245 MPNRNLVS-----WNAMINGYMKAGDVDSACELFDDMEI-RDLITWNSMIAGYELNG 295
           + +R+ +      +  M++ + +AG +D A ++ D+M +  DL    +++   +++G
Sbjct: 357 IVSRHGIEPKGEHYGCMVDLFGRAGQLDEAKKVIDEMPMDPDLAVLGALLGACKIHG 413


>gi|414588833|tpg|DAA39404.1| TPA: hypothetical protein ZEAMMB73_882385 [Zea mays]
          Length = 668

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 231/580 (39%), Positives = 332/580 (57%), Gaps = 49/580 (8%)

Query: 141 GKQIHGLVFKLG-FGFDKFVLSSLVSMYAK-FGEIDLGRRVFDAMDDKDLVSWNCLIDGY 198
           G+Q+H L  + G F  D +  S+L+ MY   F  +D  RR FD +   + V    +  G 
Sbjct: 107 GRQLHLLALRSGLFPSDAYCASALLHMYHHCFRPLD-ARRAFDEIPTPNPVIVTAMASGC 165

Query: 199 VKKGEVEVAMKLFDEM------------------------PDRDLFSWT-CLVDGFSKCG 233
           ++   V   + +F  M                        PDR +      LV      G
Sbjct: 166 MRNNLVYTTLSIFRSMVASGSAGVVDEAAALVALSASARVPDRGITGGIHALVSKIGLDG 225

Query: 234 KVEIAREIFYRMPNRNLVSWNAMINGYMKAG--DVDSACELFDDMEIRDLITWNSMIAGY 291
           +  +A               N +I+ Y K G  D+ +A +LFD M+ RD+++WN+MIA Y
Sbjct: 226 QTGVA---------------NTIIDAYAKGGGHDLGAARKLFDMMD-RDVVSWNTMIALY 269

Query: 292 ELNGRFMEALELLETMLI--GDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVV 349
             NG   EAL L   MLI  GDV  N  TL + L A A    +  G+ +H+ +V+ G   
Sbjct: 270 AQNGLSTEALGLYSKMLIVGGDVRCNAVTLSAVLLACAHAGAIQTGKRIHNQVVRMGLED 329

Query: 350 DGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMC 409
           +  +GT ++ MYSKCG +E A   F+ I  K +  W+AMI G GMHG   +AL +F  M 
Sbjct: 330 NVYVGTSVVDMYSKCGKVEMAWKAFQKIKGKNILSWSAMIAGYGMHGYGQEALHVFTDMR 389

Query: 410 RMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYL 469
           + G+KP  ITFI VL ACSHAGL+++GR ++N M  ++GIEP +EHYGC+VD+L R G L
Sbjct: 390 KSGLKPNYITFITVLAACSHAGLLSEGRYWYNTMKTEFGIEPGVEHYGCMVDLLGRAGCL 449

Query: 470 EEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIY 529
           +EA   I+ M ++P+  +W +LLS  R + N ++ +  A  L ++     G YV+LSNIY
Sbjct: 450 DEAYGLIKEMKVKPDAALWGALLSACRIYKNVELAKICAERLFELDATNSGYYVLLSNIY 509

Query: 530 AAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMR 589
           A AG W +V  +R ++K RG  K PG SS+E +G  H F VGDKSHPQ  EI++ L ++ 
Sbjct: 510 AEAGMWKEVERMRVLVKTRGIEKPPGYSSVELKGKTHLFYVGDKSHPQYKEIYAYLEKLL 569

Query: 590 NKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVC 649
            ++  AG+VP+T  VL  + D +E+E+ L  HSE+LA+AF L+N    S I ++KNLRVC
Sbjct: 570 ERIHDAGYVPNTGSVLHDL-DVEERESMLRIHSEKLAVAFALMNSVQGSVIHVIKNLRVC 628

Query: 650 NDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            DCH+  K+++ +  REII+RD  RFHHFK+G CSC D+W
Sbjct: 629 TDCHAAIKIITKLTGREIIIRDLKRFHHFKDGLCSCGDYW 668



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 132/266 (49%), Gaps = 14/266 (5%)

Query: 37  TQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKC 96
           T  +HAL  K  L   +G+++ ++  Y     ++L  AR +FD  +    +V +N +I  
Sbjct: 211 TGGIHALVSKIGLDGQTGVANTIIDAYAKGGGHDLGAARKLFD--MMDRDVVSWNTMIAL 268

Query: 97  YVFNQRSHEALTLFCDLL--DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
           Y  N  S EAL L+  +L     +  +  TL  V+   A  GAI+ GK+IH  V ++G  
Sbjct: 269 YAQNGLSTEALGLYSKMLIVGGDVRCNAVTLSAVLLACAHAGAIQTGKRIHNQVVRMGLE 328

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
            + +V +S+V MY+K G++++  + F  +  K+++SW+ +I GY   G  + A+ +F +M
Sbjct: 329 DNVYVGTSVVDMYSKCGKVEMAWKAFQKIKGKNILSWSAMIAGYGMHGYGQEALHVFTDM 388

Query: 215 PDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNR-----NLVSWNAMINGYMKAGD 265
               L     ++  ++   S  G +   R  +  M         +  +  M++   +AG 
Sbjct: 389 RKSGLKPNYITFITVLAACSHAGLLSEGRYWYNTMKTEFGIEPGVEHYGCMVDLLGRAGC 448

Query: 266 VDSACELFDDMEIR-DLITWNSMIAG 290
           +D A  L  +M+++ D   W ++++ 
Sbjct: 449 LDEAYGLIKEMKVKPDAALWGALLSA 474



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 100/405 (24%), Positives = 184/405 (45%), Gaps = 52/405 (12%)

Query: 38  QQLHALSVKTNLIYHSG-ISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKC 96
           +QLH L++++ L       +S LL +Y   H      AR  FD I   P+ V+   +   
Sbjct: 108 RQLHLLALRSGLFPSDAYCASALLHMY--HHCFRPLDARRAFDEI-PTPNPVIVTAMASG 164

Query: 97  YVFNQRSHEALTLFCDLL--DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
            + N   +  L++F  ++      + D       +  +AR+        IH LV K+G  
Sbjct: 165 CMRNNLVYTTLSIFRSMVASGSAGVVDEAAALVALSASARVPDRGITGGIHALVSKIGLD 224

Query: 155 FDKFVLSSLVSMYAKFGEIDLG--RRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFD 212
               V ++++  YAK G  DLG  R++FD MD +D+VSWN +I  Y + G    A+ L+ 
Sbjct: 225 GQTGVANTIIDAYAKGGGHDLGAARKLFDMMD-RDVVSWNTMIALYAQNGLSTEALGLYS 283

Query: 213 EM------PDRDLFSWTCLVDGFSKCGKVEIAREI---FYRMP-NRNLVSWNAMINGYMK 262
           +M         +  + + ++   +  G ++  + I     RM    N+    ++++ Y K
Sbjct: 284 KMLIVGGDVRCNAVTLSAVLLACAHAGAIQTGKRIHNQVVRMGLEDNVYVGTSVVDMYSK 343

Query: 263 AGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSA 322
            G V+ A + F  ++ +++++W++MIAGY ++G   EAL +   M    + PN  T ++ 
Sbjct: 344 CGKVEMAWKAFQKIKGKNILSWSAMIAGYGMHGYGQEALHVFTDMRKSGLKPNYITFITV 403

Query: 323 LSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKV 382
           L+A +   +L++GR+ ++  +K  F ++                               V
Sbjct: 404 LAACSHAGLLSEGRYWYN-TMKTEFGIE-----------------------------PGV 433

Query: 383 GHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNAC 427
            H+  M+  LG  G   +A  L  +   M +KP A  +  +L+AC
Sbjct: 434 EHYGCMVDLLGRAGCLDEAYGLIKE---MKVKPDAALWGALLSAC 475


>gi|345505212|gb|AEN99830.1| chlororespiratory reduction 4, partial [Brassica oleracea]
          Length = 590

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 231/582 (39%), Positives = 330/582 (56%), Gaps = 45/582 (7%)

Query: 33  THKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLV---- 88
           T  +  +LHA  + T LI +  +++R++  +     ++     + F R + H   V    
Sbjct: 7   TSHDLNKLHARLITTGLIKNPDLTTRIVLAFASASASSRRPFLAEFARCVFHEHHVSSSG 66

Query: 89  ------LYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGK 142
                 L+N++IK +       +AL L C +L+  +  D F+L   +K  +RLG +KEG 
Sbjct: 67  EVEDPFLWNVVIKSHSHGVDPRKALFLLCLMLESSVPVDKFSLSLALKACSRLGFVKEGT 126

Query: 143 QIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKG 202
           Q+HG + K G   D F+ + L+ +Y K G +   R+VFD M ++D VS+N +IDGYVK G
Sbjct: 127 QVHGFLIKTGTWSDLFLQNCLIGLYIKCGFLGFARQVFDRMPERDSVSYNSMIDGYVKCG 186

Query: 203 EVE----------------------------------VAMKLFDEMPDRDLFSWTCLVDG 228
            VE                                  VA KLFDEMP++DL SW  ++ G
Sbjct: 187 LVESAGELFDLMPREKRNLITWNSMIGGYAQRADGVDVAEKLFDEMPEKDLISWNSMIGG 246

Query: 229 FSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMI 288
           + K G++E A+ +F  MP R++V+W  MI+GY K G V  A  LFD M  RD++ +NSM+
Sbjct: 247 YVKHGRIEDAKGLFNVMPRRDVVTWAIMIDGYGKLGLVHVAKTLFDQMPHRDVVAYNSMM 306

Query: 289 AGYELNGRFMEALELLETMLIGDVL-PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGF 347
           +GY  N   MEALE+   M     L P++ +LV  LSA+A L  L+K   MH YIV+  F
Sbjct: 307 SGYVQNRYHMEALEVFNHMEKESHLTPDETSLVIVLSAIAQLGRLSKAIDMHLYIVEKQF 366

Query: 348 VVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNK 407
            + G LG  LI MYSKCGSI+ A+ VF  I  K + HW AMI GL +HG+   A D+  +
Sbjct: 367 PLSGKLGVALIDMYSKCGSIQHAMRVFEGIESKSIDHWNAMIGGLAVHGLGESAFDMLFQ 426

Query: 408 MCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTG 467
           + R  +KP  ITF+GVLNACSH+GLV +G   F +M   + IEP ++HYGC+VDIL R+G
Sbjct: 427 IERRSIKPDHITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILARSG 486

Query: 468 YLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSN 527
            ++ A++ IE MP+ PN VIW + L+   +H   + GE  A +LI         YV+LSN
Sbjct: 487 SIKLARNLIEGMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLILXGGYNPSSYVLLSN 546

Query: 528 IYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFV 569
           +YA+ G W  V  VR MMK++   K PG S IE  G +HEF+
Sbjct: 547 MYASNGMWKDVRRVRTMMKEKNIEKIPGCSWIELDGRVHEFL 588


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 227/658 (34%), Positives = 372/658 (56%), Gaps = 10/658 (1%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +++HA SVK        + + L+++Y    +  +  AR +F   ++   +V +N L+   
Sbjct: 225 RRVHAQSVKFGCCSTVFVCNSLMNMYAKCGL--VEEARVVFCG-METRDMVSWNTLMAGL 281

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
           V N    EAL LF D      +    T   VIK  A +  +   +Q+H  V K GF    
Sbjct: 282 VLNGHDLEALQLFHDSRSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYG 341

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMD-DKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD 216
            V+++L+  Y+K G++     +F  M   +++VSW  +I+G ++ G+V +A  LF  M +
Sbjct: 342 NVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMRE 401

Query: 217 RDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACEL 272
             +    F+++ ++         +I  ++         +   A++  Y K  + + A  +
Sbjct: 402 DGVAPNDFTYSTILTASVASLPPQIHAQVIKTNYECTSIVGTALLASYSKLCNTEEALSI 461

Query: 273 FDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAG-LAV 331
           F  ++ +D+++W++M+  Y   G    A  +   M +  + PN+ T+ S + A A   A 
Sbjct: 462 FKMIDQKDVVSWSAMLTCYAQAGDSDGATNIFIKMTMHGLKPNEFTISSVIDACASPTAG 521

Query: 332 LNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVG 391
           ++ GR  H+  +K+       + + L+ MY++ GSIESA  +F   + + +  W +M+ G
Sbjct: 522 VDLGRQFHAISIKHRCHDALCVSSALVSMYARKGSIESAQCIFERQTDRDLVSWNSMLSG 581

Query: 392 LGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP 451
              HG + +ALD+F +M   G++   +TF+ V+  C+HAGLV +G+RYF+ M  DYGI P
Sbjct: 582 YAQHGYSQKALDVFRQMEAEGIEMDGVTFLSVIMGCAHAGLVEEGQRYFDSMARDYGITP 641

Query: 452 TIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNL 511
           T+EHY C+VD+  R G L+EA S IE M      ++W +LL   + H N ++G+ AA  L
Sbjct: 642 TMEHYACMVDLYSRAGKLDEAMSLIEGMSFPAGPMVWRTLLGACKVHKNVELGKLAAEKL 701

Query: 512 IKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVG 571
           + + P     YV+LSNIY+AAG+W +  EVR++M  +  +K+ G S I+ +  +H F+  
Sbjct: 702 LSLEPFDSATYVLLSNIYSAAGKWKEKDEVRKLMDTKKVKKEAGCSWIQIKNKVHSFIAS 761

Query: 572 DKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGL 631
           DKSHP +++I++KL  M  KLK  G+ PDT+  L  + ++ +KEA L  HSERLA+AFGL
Sbjct: 762 DKSHPLSEQIYAKLRAMTTKLKQEGYCPDTSFALHEVAEE-QKEAMLAMHSERLALAFGL 820

Query: 632 INVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           I     +P+ I KNLRVC DCH+V K++S I +REI++RD SRFHHF +G CSC DFW
Sbjct: 821 IATPPGAPLHIFKNLRVCGDCHTVIKMVSKIEDREIVMRDCSRFHHFNSGVCSCGDFW 878



 Score =  175 bits (444), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 130/475 (27%), Positives = 230/475 (48%), Gaps = 24/475 (5%)

Query: 38  QQLHALSVKTNLIYHS----GISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLL 93
           +QLH L ++     H     G+ + L+ +Y+  H  ++   R +F+ + +  ++V +  L
Sbjct: 123 KQLHGLCIRCG---HDRGDVGVGTSLVDMYMKWH--SVVDGRKVFEAMPKR-NVVTWTSL 176

Query: 94  IKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGF 153
           +  Y+ +    + + LF  +    + P++ T   V+   A  G +  G+++H    K G 
Sbjct: 177 LTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQSVKFGC 236

Query: 154 GFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLF-D 212
               FV +SL++MYAK G ++  R VF  M+ +D+VSWN L+ G V  G    A++LF D
Sbjct: 237 CSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHD 296

Query: 213 EMPDRDLFSWTCLVDGFSKCGKVE---IAREIFYRMPNRNLVSW----NAMINGYMKAGD 265
                 + + +        C  ++   +AR++   +  R   S+     A+++ Y KAG 
Sbjct: 297 SRSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQ 356

Query: 266 VDSACELFDDME-IRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS 324
           + +A ++F  M   +++++W +MI G   NG    A  L   M    V PND T  + L+
Sbjct: 357 LGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILT 416

Query: 325 AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGH 384
           A    +V +    +H+ ++K  +    ++GT L+  YSK  + E AL++F+ I +K V  
Sbjct: 417 A----SVASLPPQIHAQVIKTNYECTSIVGTALLASYSKLCNTEEALSIFKMIDQKDVVS 472

Query: 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMI 444
           W+AM+      G +  A ++F KM   G+KP   T   V++AC+      D  R F+ + 
Sbjct: 473 WSAMLTCYAQAGDSDGATNIFIKMTMHGLKPNEFTISSVIDACASPTAGVDLGRQFHAIS 532

Query: 445 NDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
             +     +     LV +  R G +E A+   E    R + V W S+LSG   HG
Sbjct: 533 IKHRCHDALCVSSALVSMYARKGSIESAQCIFERQTDR-DLVSWNSMLSGYAQHG 586



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/296 (32%), Positives = 156/296 (52%), Gaps = 10/296 (3%)

Query: 141 GKQIHGLVFKLGFGF-DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYV 199
           GKQ+HGL  + G    D  V +SLV MY K+  +  GR+VF+AM  +++V+W  L+ GY+
Sbjct: 122 GKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWTSLLTGYI 181

Query: 200 KKGEVEVAMKLFDEMPDRDLF----SWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS--- 252
           + G +   M+LF  M    ++    ++  ++   +  G V++ R +  +       S   
Sbjct: 182 QDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQSVKFGCCSTVF 241

Query: 253 -WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGD 311
             N+++N Y K G V+ A  +F  ME RD+++WN+++AG  LNG  +EAL+L        
Sbjct: 242 VCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSI 301

Query: 312 VLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESAL 371
            +   +T  + +   A +  L   R +HS ++K GF   G + T L+  YSK G + +AL
Sbjct: 302 TMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNAL 361

Query: 372 TVFRAIS-KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNA 426
            +F  +S  + V  WTAMI G   +G    A  LF++M   G+ P   T+  +L A
Sbjct: 362 DIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILTA 417



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 136/286 (47%), Gaps = 14/286 (4%)

Query: 20  PSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFD 79
           P+   ++ +  +S      Q+HA  +KTN    S + + LL+ Y    + N   A SIF 
Sbjct: 406 PNDFTYSTILTASVASLPPQIHAQVIKTNYECTSIVGTALLASY--SKLCNTEEALSIF- 462

Query: 80  RILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGA-I 138
           +++    +V ++ ++ CY     S  A  +F  +    L P+ FT+  VI   A   A +
Sbjct: 463 KMIDQKDVVSWSAMLTCYAQAGDSDGATNIFIKMTMHGLKPNEFTISSVIDACASPTAGV 522

Query: 139 KEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGY 198
             G+Q H +  K        V S+LVSMYA+ G I+  + +F+   D+DLVSWN ++ GY
Sbjct: 523 DLGRQFHAISIKHRCHDALCVSSALVSMYARKGSIESAQCIFERQTDRDLVSWNSMLSGY 582

Query: 199 VKKGEVEVAMKLFDEMP----DRDLFSWTCLVDGFSKCGKVEIAREIFYRMP-----NRN 249
            + G  + A+ +F +M     + D  ++  ++ G +  G VE  +  F  M         
Sbjct: 583 AQHGYSQKALDVFRQMEAEGIEMDGVTFLSVIMGCAHAGLVEEGQRYFDSMARDYGITPT 642

Query: 250 LVSWNAMINGYMKAGDVDSACELFDDMEI-RDLITWNSMIAGYELN 294
           +  +  M++ Y +AG +D A  L + M      + W +++   +++
Sbjct: 643 MEHYACMVDLYSRAGKLDEAMSLIEGMSFPAGPMVWRTLLGACKVH 688



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 116/247 (46%), Gaps = 1/247 (0%)

Query: 254 NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL 313
            ++++ YMK   V    ++F+ M  R+++TW S++ GY  +G   + +EL   M    V 
Sbjct: 143 TSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFRMRAEGVW 202

Query: 314 PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTV 373
           PN  T  S LS VA   +++ GR +H+  VK G      +   L+ MY+KCG +E A  V
Sbjct: 203 PNSVTFASVLSVVASQGMVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVV 262

Query: 374 FRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLV 433
           F  +  + +  W  ++ GL ++G   +AL LF+         T  T+  V+  C++   +
Sbjct: 263 FCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITMLTQSTYATVIKLCANIKQL 322

Query: 434 NDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLS 493
              R+  + ++   G          L+D   + G L  A      M    N V W ++++
Sbjct: 323 GLARQLHSSVLK-RGFHSYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMIN 381

Query: 494 GARNHGN 500
           G   +G+
Sbjct: 382 GCIQNGD 388


>gi|334182623|ref|NP_001185013.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191339|gb|AEE29460.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 928

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 234/673 (34%), Positives = 371/673 (55%), Gaps = 25/673 (3%)

Query: 34  HKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRIL--QHPS--LVL 89
            K  + +H L VK        + + LL +Y           RS+   ++  Q P+  L+ 
Sbjct: 260 QKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGA-------GRSVEANLVFKQMPTKDLIS 312

Query: 90  YNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVF 149
           +N L+  +V + RS +AL L C ++      +  T    +         ++G+ +HGLV 
Sbjct: 313 WNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVV 372

Query: 150 KLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMK 209
             G  +++ + ++LVSMY K GE+   RRV   M  +D+V+WN LI GY +  + + A+ 
Sbjct: 373 VSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALA 432

Query: 210 LFDEMPDRDLFS-WTCLVDGFSKC----GKVEIAREIFYRMPNRNLVS----WNAMINGY 260
            F  M    + S +  +V   S C      +E  + +   + +    S     N++I  Y
Sbjct: 433 AFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMY 492

Query: 261 MKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLV 320
            K GD+ S+ +LF+ ++ R++ITWN+M+A    +G   E L+L+  M    V  +  +  
Sbjct: 493 AKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFS 552

Query: 321 SALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKK 380
             LSA A LAVL +G+ +H   VK GF  D  +      MYSKCG I   + +      +
Sbjct: 553 EGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNR 612

Query: 381 KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYF 440
            +  W  +I  LG HG   +    F++M  MG+KP  +TF+ +L ACSH GLV+ G  Y+
Sbjct: 613 SLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYY 672

Query: 441 NMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGN 500
           +M+  D+G+EP IEH  C++D+L R+G L EA++ I  MPM+PN ++W SLL+  + HGN
Sbjct: 673 DMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGN 732

Query: 501 KDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIE 560
            D G  AA NL K+ P+    YV+ SN++A  G+W+ V  VR+ M  +  +K    S ++
Sbjct: 733 LDRGRKAAENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVK 792

Query: 561 HRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELEN 620
            +  +  F +GD++HPQT EI++KL +++  +K +G+V DT+Q L    D+++KE  L N
Sbjct: 793 LKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIKESGYVADTSQALQDT-DEEQKEHNLWN 851

Query: 621 HSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKN 680
           HSERLA+A+ L++    S +RI KNLR+C+DCHSV K +S +  R I++RD  RFHHF+ 
Sbjct: 852 HSERLALAYALMSTPEGSTVRIFKNLRICSDCHSVYKFVSRVIGRRIVLRDQYRFHHFER 911

Query: 681 G----SCSCKDFW 689
           G        + FW
Sbjct: 912 GLFGKGSGFQQFW 924



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 121/479 (25%), Positives = 216/479 (45%), Gaps = 12/479 (2%)

Query: 32  STHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYN 91
           S  +E  Q+H    K+ L+    +S+ +L LY    +  +  +R +F+  +   ++V + 
Sbjct: 56  SMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGL--VSCSRKVFEE-MPDRNVVSWT 112

Query: 92  LLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKL 151
            L+  Y       E + ++  +    +  +  ++  VI     L     G+QI G V K 
Sbjct: 113 SLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKS 172

Query: 152 GFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLF 211
           G      V +SL+SM    G +D    +FD M ++D +SWN +   Y + G +E + ++F
Sbjct: 173 GLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIF 232

Query: 212 DEMPD-RDLFSWTCLVDGFSKCGKVEIAR------EIFYRMPNRNLVS-WNAMINGYMKA 263
             M    D  + T +    S  G V+  +       +  +M   ++V   N ++  Y  A
Sbjct: 233 SLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGA 292

Query: 264 GDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSAL 323
           G    A  +F  M  +DLI+WNS++A +  +GR ++AL LL +M+      N  T  SAL
Sbjct: 293 GRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSAL 352

Query: 324 SAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVG 383
           +A        KGR +H  +V +G   + ++G  L+ MY K G +  +  V   + ++ V 
Sbjct: 353 AACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVV 412

Query: 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMM 443
            W A+I G        +AL  F  M   G+    IT + VL+AC   G + +  +  +  
Sbjct: 413 AWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAY 472

Query: 444 INDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKD 502
           I   G E        L+ +  + G L  ++     +  R N + W ++L+   +HG+ +
Sbjct: 473 IVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNR-NIITWNAMLAANAHHGHGE 530



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 113/482 (23%), Positives = 192/482 (39%), Gaps = 68/482 (14%)

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVS---------------------- 165
           ++ G  R+G   EG +    +  LG     FV++SLV+                      
Sbjct: 12  MMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKS 71

Query: 166 --------------MYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLF 211
                         +Y  +G +   R+VF+ M D+++VSW  L+ GY  KGE E  + ++
Sbjct: 72  GLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIY 131

Query: 212 DEMPDRDL-FSWTCLVDGFSKCGKVE---IAREIFYRMPNRNLVS----WNAMINGYMKA 263
             M    +  +   +    S CG ++   + R+I  ++    L S     N++I+     
Sbjct: 132 KGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSM 191

Query: 264 GDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSAL 323
           G+VD A  +FD M  RD I+WNS+ A Y  NG   E+  +   M       N  T+ + L
Sbjct: 192 GNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLL 251

Query: 324 SAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVG 383
           S +  +     GR +H  +VK GF     +   L++MY+  G    A  VF+ +  K + 
Sbjct: 252 SVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLI 311

Query: 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGR------ 437
            W +++      G +  AL L   M   G     +TF   L AC        GR      
Sbjct: 312 SWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLV 371

Query: 438 ----RYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLS 493
                ++N +I +            LV +  + G + E++  +  MP R + V W +L+ 
Sbjct: 372 VVSGLFYNQIIGN-----------ALVSMYGKIGEMSESRRVLLQMPRR-DVVAWNALIG 419

Query: 494 GARNHGNKD--IGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFR 551
           G     + D  +  +    +  V+ + I    VLS         ++   +   +   GF 
Sbjct: 420 GYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFE 479

Query: 552 KD 553
            D
Sbjct: 480 SD 481



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 110/229 (48%), Gaps = 9/229 (3%)

Query: 276 MEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVA-GLAVLNK 334
           M +R+ ++WN+M++G    G ++E +E    M    + P+   + S ++A     ++  +
Sbjct: 1   MPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFRE 60

Query: 335 GRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGM 394
           G  +H ++ K+G + D  + T ++ +Y   G +  +  VF  +  + V  WT+++VG   
Sbjct: 61  GVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSD 120

Query: 395 HGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVND---GRRYFNMMINDYGIEP 451
            G   + +D++  M   G+     +   V+++C   GL+ D   GR+    ++   G+E 
Sbjct: 121 KGEPEEVIDIYKGMRGEGVGCNENSMSLVISSC---GLLKDESLGRQIIGQVVKS-GLES 176

Query: 452 TIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGN 500
            +     L+ +L   G ++ A    + M  R + + W S+ +    +G+
Sbjct: 177 KLAVENSLISMLGSMGNVDYANYIFDQMSER-DTISWNSIAAAYAQNGH 224



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 54/127 (42%), Gaps = 19/127 (14%)

Query: 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMI 444
           W  M+ G+   G+  + ++ F KMC +G+KP++     ++ AC  +G         +M  
Sbjct: 9   WNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSG---------SMFR 59

Query: 445 NDYGIEPTIEHYGCLVDILCRT---------GYLEEAKSTIESMPMRPNFVIWMSLLSGA 495
               +   +   G L D+   T         G +  ++   E MP R N V W SL+ G 
Sbjct: 60  EGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDR-NVVSWTSLMVGY 118

Query: 496 RNHGNKD 502
            + G  +
Sbjct: 119 SDKGEPE 125


>gi|147855060|emb|CAN82371.1| hypothetical protein VITISV_027622 [Vitis vinifera]
          Length = 697

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 232/678 (34%), Positives = 384/678 (56%), Gaps = 13/678 (1%)

Query: 21  SRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDR 80
           ++ H +IL+     K  QQ+HA  + + L +++ +S+ L++ YV  +   L  A+ IF  
Sbjct: 24  AQSHASILRKLKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYV--YCGLLADAKQIFHH 81

Query: 81  ILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKE 140
                ++V + +LI     N    EA+ +F ++      P+  T+  V+   A LG I+ 
Sbjct: 82  T-PCKNVVSWTILISGLAKNDCFVEAIDVFREMTMGNFKPNAVTISSVLPAFANLGLIRI 140

Query: 141 GKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVK 200
            K +H    + GF  + FV ++LV MY+KFG + + R++F++M ++++VSWN ++ GY  
Sbjct: 141 AKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVSWNAIVSGYSD 200

Query: 201 KGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREI---FYRMPNRNLVSW 253
            G  E A+ LF+ M  +    D ++   L+      G +++   I     R    N    
Sbjct: 201 HGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHI 260

Query: 254 -NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETML-IGD 311
             A+++ Y+    VD A  +F +M ++D+  W  M+ G+     +  A++    ML I +
Sbjct: 261 KTALMDIYVSHNCVDDAHRVFSEMFVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQN 320

Query: 312 VLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESAL 371
           +  +   L+  LS+ +    L +GR +H+  +K  F  +  +G+ +I MY+ CG++E A 
Sbjct: 321 LKLDSIVLMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAK 380

Query: 372 TVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAG 431
             F  + +K V  W AMI G GM+G  T A+DLF +M   G+ P   TF+ VL ACSHAG
Sbjct: 381 RFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAG 440

Query: 432 LVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSL 491
           +V +G + F  M+      P ++HY C++DIL R G L+ A S I +MP +P+F ++ +L
Sbjct: 441 MVYEGLQIFYHMVKTSHDIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTL 500

Query: 492 LSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFR 551
           L   R HGN  +G   +  + ++ P+  G YV+LSN+YA AG W+ V   R  ++ +  +
Sbjct: 501 LGACRIHGNIKLGHEISQKIFEMEPNDAGYYVLLSNMYALAGNWEGVKMTRASLRSKRLK 560

Query: 552 KDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQ 611
           KDPG SSIE    ++ F+ G+K HPQ  +I   L  +  K+K AG+VP+T  +L  + D 
Sbjct: 561 KDPGFSSIEINQEIYTFMAGEKDHPQYFKIEGILKGLILKIKKAGYVPNTNVLLQDVSDD 620

Query: 612 KEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRD 671
            +K+  L +HSE++AIAFGL+  K  + IRI KNLR CNDCHS +K +S ++ R ++++D
Sbjct: 621 MKKDI-LYHHSEKMAIAFGLMRTKPGTIIRITKNLRTCNDCHSASKFVSKVFGRVLVIKD 679

Query: 672 NSRFHHFKNGSCSCKDFW 689
            +RFH F++G CSC+D+W
Sbjct: 680 ANRFHVFQDGVCSCRDYW 697


>gi|77553706|gb|ABA96502.1| SEC14 cytosolic factor, putative [Oryza sativa Japonica Group]
 gi|125535837|gb|EAY82325.1| hypothetical protein OsI_37535 [Oryza sativa Indica Group]
 gi|125578563|gb|EAZ19709.1| hypothetical protein OsJ_35285 [Oryza sativa Japonica Group]
          Length = 630

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 218/581 (37%), Positives = 338/581 (58%), Gaps = 13/581 (2%)

Query: 119 LPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRR 178
           L D FTL  +++  A+  ++  GK  HGL    G   D    + L+++Y K G+ D  RR
Sbjct: 53  LIDVFTLHELLQLCAKRRSLLVGKSCHGLAIHFGLVTDTVTCNILINLYTKCGQNDCARR 112

Query: 179 VFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFD-------EMPDRDLFSWTCLVDG--- 228
           VFDAM  + ++SWN +I GY    E   A+KLF        +M +  L S  C       
Sbjct: 113 VFDAMSVRSIISWNTMIAGYTHNREDVEALKLFSRMHREGTQMTEFTLSSTLCACAAKYA 172

Query: 229 FSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMI 288
             +C ++     I   + + + V   A ++ Y K   +  AC +F++M  +  +TW+S+ 
Sbjct: 173 IIECKQLHTI-AIKLALDSSSFVG-TAFLDVYAKCNMIKDACWVFENMPEKTSVTWSSLF 230

Query: 289 AGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFV 348
           AG+  NG   E L L ++     +   + T+ S LS  A LA++ +G  +H+ IVK+GF 
Sbjct: 231 AGFVQNGLHEEVLCLFQSTQREGMQLTEFTVSSILSTCASLALIIEGTQVHAVIVKHGFH 290

Query: 349 VDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKM 408
            +  + T L+ +Y+KCG IE +  VF  + +K V  W AMI     H  + +A+ LF KM
Sbjct: 291 RNLFVATSLVDVYAKCGQIEKSYEVFADMEEKNVVLWNAMIASFSRHAHSWEAMILFEKM 350

Query: 409 CRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGY 468
            ++G+ P  +T++ +L+ACSH GLV +GR YFN++++D   EP + HY C+VD+L R+G 
Sbjct: 351 QQVGIFPNEVTYLSILSACSHTGLVEEGRHYFNLLLSDRTAEPNVLHYSCMVDVLGRSGK 410

Query: 469 LEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNI 528
            +EA   ++ MP  P   +W SLL  +R H N  +   AA  L ++ P+  G +V+LSN+
Sbjct: 411 TDEAWKLLDKMPFEPTASMWGSLLGSSRIHKNIRLARIAAEQLFRLEPENGGNHVLLSNV 470

Query: 529 YAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEM 588
           YAA+G W+ V   R+ ++  G +K+ G S IE +G +H FV G++ HP   ++++KL E+
Sbjct: 471 YAASGNWENVVVARKYLRDSGAKKEMGRSWIEAKGKIHVFVAGEREHPGITDVYNKLEEI 530

Query: 589 RNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRV 648
            ++++   H  + TQ  L      +KE  L++HSE+LA AFGLI++    PI I KNLR+
Sbjct: 531 YHEMRKISHRAN-TQCDLHDVHADQKEELLKHHSEKLAFAFGLISLPPNIPITIYKNLRI 589

Query: 649 CNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           C DCHS  K++S I  R++IVRD +RFHHFK+GSCSC DFW
Sbjct: 590 CGDCHSFMKIVSCITERQVIVRDINRFHHFKDGSCSCGDFW 630



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 102/419 (24%), Positives = 163/419 (38%), Gaps = 106/419 (25%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +  H L++   L+  +   + L++LY     N+   AR +FD  +   S++ +N +I  Y
Sbjct: 76  KSCHGLAIHFGLVTDTVTCNILINLYTKCGQNDC--ARRVFD-AMSVRSIISWNTMIAGY 132

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
             N+   EAL LF  +         FTL   +   A   AI E KQ+H +  KL      
Sbjct: 133 THNREDVEALKLFSRMHREGTQMTEFTLSSTLCACAAKYAIIECKQLHTIAIKLALDSSS 192

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP-- 215
           FV ++ + +YAK   I     VF+ M +K  V+W+ L  G+V+ G  E  + LF      
Sbjct: 193 FVGTAFLDVYAKCNMIKDACWVFENMPEKTSVTWSSLFAGFVQNGLHEEVLCLFQSTQRE 252

Query: 216 -------------------------------------DRDLFSWTCLVDGFSKCGKVEIA 238
                                                 R+LF  T LVD ++KCG++E +
Sbjct: 253 GMQLTEFTVSSILSTCASLALIIEGTQVHAVIVKHGFHRNLFVATSLVDVYAKCGQIEKS 312

Query: 239 REIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFM 298
            E+F  M  +N+V WNAMI  + +                    +W +MI          
Sbjct: 313 YEVFADMEEKNVVLWNAMIASFSRHAH-----------------SWEAMI---------- 345

Query: 299 EALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLI 358
               L E M    + PN+ T +S LSA +   ++ +GR   + ++ +      VL     
Sbjct: 346 ----LFEKMQQVGIFPNEVTYLSILSACSHTGLVEEGRHYFNLLLSDRTAEPNVL----- 396

Query: 359 QMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA 417
                                    H++ M+  LG  G   +A  L +K   M  +PTA
Sbjct: 397 -------------------------HYSCMVDVLGRSGKTDEAWKLLDK---MPFEPTA 427



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 129/269 (47%), Gaps = 13/269 (4%)

Query: 36  ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIK 95
           E +QLH +++K  L   S + +  L +Y     N +  A  +F+ + +  S V ++ L  
Sbjct: 175 ECKQLHTIAIKLALDSSSFVGTAFLDVYAK--CNMIKDACWVFENMPEKTS-VTWSSLFA 231

Query: 96  CYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF 155
            +V N    E L LF       +    FT+  ++   A L  I EG Q+H ++ K GF  
Sbjct: 232 GFVQNGLHEEVLCLFQSTQREGMQLTEFTVSSILSTCASLALIIEGTQVHAVIVKHGFHR 291

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP 215
           + FV +SLV +YAK G+I+    VF  M++K++V WN +I  + +      AM LF++M 
Sbjct: 292 NLFVATSLVDVYAKCGQIEKSYEVFADMEEKNVVLWNAMIASFSRHAHSWEAMILFEKMQ 351

Query: 216 DRDLF----SWTCLVDGFSKCGKVEIAREIFY-----RMPNRNLVSWNAMINGYMKAGDV 266
              +F    ++  ++   S  G VE  R  F      R    N++ ++ M++   ++G  
Sbjct: 352 QVGIFPNEVTYLSILSACSHTGLVEEGRHYFNLLLSDRTAEPNVLHYSCMVDVLGRSGKT 411

Query: 267 DSACELFDDMEIRDLIT-WNSMIAGYELN 294
           D A +L D M      + W S++    ++
Sbjct: 412 DEAWKLLDKMPFEPTASMWGSLLGSSRIH 440


>gi|302767396|ref|XP_002967118.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
 gi|300165109|gb|EFJ31717.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
          Length = 903

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 236/687 (34%), Positives = 379/687 (55%), Gaps = 26/687 (3%)

Query: 20  PSRLHWNI-LKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIF 78
           P+R+   I L   +  ++ + +H++  ++ L     +S+ L S Y    + +L  A+ +F
Sbjct: 226 PARITLVITLSVCAKIRQARAIHSIVRESGLEQTLVVSTALASAYA--RLGHLDQAKEVF 283

Query: 79  DRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAI 138
           DR  +   +V +N ++  Y  +    EA  LF  +L   + P   TL   +  +    ++
Sbjct: 284 DRAAER-DVVSWNAMLGAYAQHGHMSEAALLFARMLHEGIPPSKVTL---VNASTGCSSL 339

Query: 139 KEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGY 198
           + G+ IH    + G   D  + ++L+ MY + G  +  R +F+ +   + VSWN +I G 
Sbjct: 340 RFGRMIHACALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFEGIPG-NAVSWNTMIAGS 398

Query: 199 VKKGEVEVAMKLFDEM------PDRDLFS--WTCLVDGFSKCGKVEIAREIFYRMPNRNL 250
            +KG+++ A++LF  M      P R  +      +     +   +   R++  R+ +   
Sbjct: 399 SQKGQMKRALELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGY 458

Query: 251 VS----WNAMINGYMKAGDVDSACELFDD--MEIR-DLITWNSMIAGYELNGRFMEALEL 303
            S      A++  Y   G +D A   F    ME R D+++WN++I+    +G    AL  
Sbjct: 459 ASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRALGF 518

Query: 304 LETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSK 363
              M +  V PN  T V+ L A AG A L +G  +H ++  +G   +  + T L  MY +
Sbjct: 519 FRRMDLHGVAPNQITCVAVLDACAGAAALTEGVIVHDHLRHSGMESNVFVATALASMYGR 578

Query: 364 CGSIESALTVFRAIS-KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIG 422
           CGS+ESA  +F  ++ ++ V  + AMI     +G+A +AL LF +M + G +P   +F+ 
Sbjct: 579 CGSLESAREIFEKVAVERDVVIFNAMIAAYSQNGLAGEALKLFWRMQQEGSRPDEQSFVS 638

Query: 423 VLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMR 482
           VL+ACSH GL ++G   F  M   YGI P+ +HY C VD+L R G+L +A+  I  M ++
Sbjct: 639 VLSACSHGGLADEGWEIFRSMRQSYGIAPSEDHYACAVDVLGRAGWLADAEELIRCMDVK 698

Query: 483 PNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVR 542
           P  ++W +LL   R + + D G  A + + ++ P     YVVLSNI A AG+WD+ +EVR
Sbjct: 699 PTVLVWKTLLGACRKYRDVDRGRLANSMVRELDPGDESAYVVLSNILAGAGKWDEAAEVR 758

Query: 543 EMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTT 602
             M+ RG RK  G S IE +  +HEFV GD+SHP+++EI+ +L  +  +++  G+VPDT 
Sbjct: 759 TEMESRGLRKQAGKSWIEIKSRVHEFVAGDRSHPRSEEIYRELERLHAEIREIGYVPDTR 818

Query: 603 QVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGI 662
            VL  + D+ EKE  L  HSERLAIA G+++  S   +R++KNLRVC DCH+ TK +S I
Sbjct: 819 LVLRKV-DEAEKERLLCQHSERLAIALGVMS-SSTDTVRVMKNLRVCEDCHNATKFISKI 876

Query: 663 YNREIIVRDNSRFHHFKNGSCSCKDFW 689
            N+EI+VRD  RFHHF +GSCSC D+W
Sbjct: 877 VNKEIVVRDTHRFHHFVDGSCSCGDYW 903



 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 148/517 (28%), Positives = 247/517 (47%), Gaps = 36/517 (6%)

Query: 36  ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIK 95
           + +++HA  V   L     + + LL LY+     +L     +F R L+      +  +I 
Sbjct: 47  QGRRIHARIVSLGL--EEELGNHLLRLYLK--CESLGDVEEVFSR-LEVRDEASWTTIIT 101

Query: 96  CYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF 155
            Y  + ++  A+ +F  +    +  D  T   V+K  ARLG + +G+ IH  + + G   
Sbjct: 102 AYTEHGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHAWIVESGLEG 161

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM- 214
              + + L+ +Y   G +     +F+ M ++DLVSWN  I    + G++++A++LF  M 
Sbjct: 162 KSVLANLLLHIYGSCGCVASAMLLFERM-ERDLVSWNAAIAANAQSGDLDMALELFQRMQ 220

Query: 215 -----PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMP----NRNLVSWNAMINGYMKAGD 265
                P R       LV   S C K+  AR I   +      + LV   A+ + Y + G 
Sbjct: 221 LEGVRPAR-----ITLVITLSVCAKIRQARAIHSIVRESGLEQTLVVSTALASAYARLGH 275

Query: 266 VDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSA 325
           +D A E+FD    RD+++WN+M+  Y  +G   EA  L   ML   + P+  TLV+A + 
Sbjct: 276 LDQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGIPPSKVTLVNAST- 334

Query: 326 VAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHW 385
             G + L  GR +H+  ++ G   D VLG  L+ MY++CGS E A  +F  I    V  W
Sbjct: 335 --GCSSLRFGRMIHACALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFEGIPGNAVS-W 391

Query: 386 TAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACS----HAGLVNDGRRYFN 441
             MI G    G   +AL+LF +M   GM P   T++ +L A +     A  + +GR+  +
Sbjct: 392 NTMIAGSSQKGQMKRALELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHS 451

Query: 442 MMIN-DYGIEPTIEHYGCLVDILCRTGYLEEAKSTIE--SMPMRPNFVIWMSLLS--GAR 496
            +++  Y  EP I     +V +    G ++EA ++ +  +M  R + V W +++S     
Sbjct: 452 RIVSCGYASEPAIG--TAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQH 509

Query: 497 NHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAG 533
            HG + +G +   +L  VAP+ I C  VL     AA 
Sbjct: 510 GHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAA 546



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 102/375 (27%), Positives = 176/375 (46%), Gaps = 28/375 (7%)

Query: 138 IKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDG 197
           + +G++IH  +  LG   ++ + + L+ +Y K   +     VF  ++ +D  SW  +I  
Sbjct: 45  LSQGRRIHARIVSLGL--EEELGNHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITA 102

Query: 198 YVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNL--- 250
           Y + G+ + A+ +F  M       D  ++  ++   ++ G +   R I   +    L   
Sbjct: 103 YTEHGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHAWIVESGLEGK 162

Query: 251 -VSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLI 309
            V  N +++ Y   G V SA  LF+ ME RDL++WN+ IA    +G    ALEL + M +
Sbjct: 163 SVLANLLLHIYGSCGCVASAMLLFERME-RDLVSWNAAIAANAQSGDLDMALELFQRMQL 221

Query: 310 GDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIES 369
             V P   TLV  LS  A +    + R +HS + ++G     V+ T L   Y++ G ++ 
Sbjct: 222 EGVRPARITLVITLSVCAKI---RQARAIHSIVRESGLEQTLVVSTALASAYARLGHLDQ 278

Query: 370 ALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSH 429
           A  VF   +++ V  W AM+     HG  ++A  LF +M   G+ P+ +T +     CS 
Sbjct: 279 AKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGIPPSKVTLVNASTGCSS 338

Query: 430 AGLVNDGRRYFNMMIN----DYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNF 485
                     F  MI+    + G++  I     L+D+  R G  EEA+   E +P   N 
Sbjct: 339 L--------RFGRMIHACALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFEGIP--GNA 388

Query: 486 VIWMSLLSGARNHGN 500
           V W ++++G+   G 
Sbjct: 389 VSWNTMIAGSSQKGQ 403



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 99/212 (46%), Gaps = 7/212 (3%)

Query: 317 ATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRA 376
           A LV  L A     +L++GR +H+ IV  G   +  LG  L+++Y KC S+     VF  
Sbjct: 30  AHLVRLLRAAGDDRLLSQGRRIHARIVSLGL--EEELGNHLLRLYLKCESLGDVEEVFSR 87

Query: 377 ISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDG 436
           +  +    WT +I     HG A +A+ +F++M + G++  A+TF+ VL AC+  G ++ G
Sbjct: 88  LEVRDEASWTTIITAYTEHGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQG 147

Query: 437 RRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGAR 496
            R  +  I + G+E        L+ I    G +  A    E M    + V W + ++   
Sbjct: 148 -RSIHAWIVESGLEGKSVLANLLLHIYGSCGCVASAMLLFERMER--DLVSWNAAIAANA 204

Query: 497 NHGNKDIG--EYAANNLIKVAPDTIGCYVVLS 526
             G+ D+    +    L  V P  I   + LS
Sbjct: 205 QSGDLDMALELFQRMQLEGVRPARITLVITLS 236


>gi|218197313|gb|EEC79740.1| hypothetical protein OsI_21088 [Oryza sativa Indica Group]
          Length = 1068

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 225/657 (34%), Positives = 366/657 (55%), Gaps = 20/657 (3%)

Query: 39   QLHALSVKTNLIYHSGISSRLLSLYV-DPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
            +LH L+     I +  +++ LL +Y    HI+    A  +F + +    +V ++ +I  +
Sbjct: 420  KLHELAQNKGFIRYVVVANALLEMYAKSKHIDK---AIEVF-KFMAEKDVVSWSSMIAGF 475

Query: 98   VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
             FN RS +AL  F  +L   + P++ T    +   A  GA++ GK+IH  V + G G + 
Sbjct: 476  CFNHRSFDALYYFRYMLGH-VKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEG 534

Query: 158  FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
            +V ++L+ +Y K G+       F    +KD+VSWN ++ G+V  G  ++A+ LF++M   
Sbjct: 535  YVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMMYT 594

Query: 218  DL--FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSW----NAMINGYMKAGDVDSACE 271
             L        +   +  G++++  ++     N+  + +    NA++  Y K+  +D A E
Sbjct: 595  SLGRMGACSALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKAIE 654

Query: 272  LFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAV 331
            +F  M  +D+++W+SMIAG+  N R  +AL     ML G V PN  T ++ALSA A    
Sbjct: 655  VFKFMAEKDVVSWSSMIAGFCFNHRSFDALYYFRYML-GHVKPNSVTFIAALSACAATGA 713

Query: 332  LNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVG 391
            L  G+ +H+Y+++ G   +G +   L+ +Y KCG    A   F   S+K V  W  M+ G
Sbjct: 714  LRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSG 773

Query: 392  LGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP 451
               HG+   AL LFN+M  MG  P  +TF+ ++ ACS AG+V  G   F+     + I P
Sbjct: 774  FVAHGLGDIALSLFNQMVEMGEHPDEVTFV-LMCACSRAGMVIQGWELFHRRTEKFSIVP 832

Query: 452  TIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNL 511
             ++HY C+VD+L R G L EA + I  MP++P+  +W +LL+G R H + ++GE AA  +
Sbjct: 833  NLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAVWGALLNGCRIHRHVELGELAAKVI 892

Query: 512  IKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVG 571
            +++ P+ +  +V+L ++Y  AG+W +V+ VR+ M+++G  +D G S +E +GV H F+  
Sbjct: 893  LELEPNDVAYHVLLCDLYTDAGKWAQVARVRKTMREKGLEQDNGCSWVEVKGVTHAFLTD 952

Query: 572  DKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAE-LENHSERLAIAFG 630
            D+SHPQ  EI+  L  +  ++KA G  P  +     +ED++  E + L  HSERLA+AFG
Sbjct: 953  DESHPQIKEINVVLHGIYERMKACGFAPVES-----LEDKEVSEDDILCGHSERLAVAFG 1007

Query: 631  LINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKD 687
            LIN    + I + KN   C  CH + K +S I  REI VRD  + H FK+G CSC D
Sbjct: 1008 LINTTPGTTISVTKNRYTCQSCHVIFKAISEIVRREITVRDTKQLHCFKDGDCSCGD 1064



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 143/474 (30%), Positives = 241/474 (50%), Gaps = 22/474 (4%)

Query: 90  YNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVF 149
           +N+++  Y       EAL L+  +L   + PD +T PCV++    +   + G+++H  V 
Sbjct: 165 WNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVL 224

Query: 150 KLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMK 209
           + GFG +  VL++LV+MYAK G+I   R+VFD M   D +SWN +I G+ +  E E  ++
Sbjct: 225 RFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAMTDCISWNAMIAGHFENHECEAGLE 284

Query: 210 LFDEMPDRD----LFSWTCLVDGFSKCGKVEIAREIFYRMPNR----NLVSWNAMINGYM 261
           LF  M + +    L + T +        +V  A+E+      R    ++   N++I  Y 
Sbjct: 285 LFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYT 344

Query: 262 KAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVS 321
             G +  A ++F  ME +D ++W +MI+GYE NG   +ALE+   M + +V P+D T+ S
Sbjct: 345 SLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALMELHNVNPDDVTIAS 404

Query: 322 ALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKK 381
           AL+A A L  L+ G  +H      GF+   V+   L++MY+K   I+ A+ VF+ +++K 
Sbjct: 405 ALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKD 464

Query: 382 VGHWTAMIVGLGMHGMATQALDLFNKMCRMG-MKPTAITFIGVLNACSHAGLVNDGRRYF 440
           V  W++MI G   +  +  AL  F  M  +G +KP ++TFI  L+AC+  G +  G+   
Sbjct: 465 VVSWSSMIAGFCFNHRSFDALYYFRYM--LGHVKPNSVTFIAALSACAATGALRSGKE-- 520

Query: 441 NMMINDYGIEPTIEHYG----CLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGAR 496
              I+ Y +   I   G     L+D+  + G    A +   S+    + V W  +LSG  
Sbjct: 521 ---IHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQF-SVHSEKDVVSWNIMLSGFV 576

Query: 497 NHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGF 550
            HG  DI     N ++  +   +G         A  G+ D   ++ E+ + +GF
Sbjct: 577 AHGLGDIALSLFNQMMYTSLGRMG-ACSALAACACLGRLDVGIKLHELAQNKGF 629



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 112/398 (28%), Positives = 185/398 (46%), Gaps = 43/398 (10%)

Query: 192 NCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM------ 245
           N ++   V+ GE+  A ++F +MP+RD+FSW  +V G+ K G +E A +++YRM      
Sbjct: 135 NAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAGMR 194

Query: 246 PN-----------RNLVSW----------------------NAMINGYMKAGDVDSACEL 272
           P+             +  W                      NA++  Y K GD+ +A ++
Sbjct: 195 PDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKV 254

Query: 273 FDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVL 332
           FD M + D I+WN+MIAG+  N      LEL  TML  +V PN  T+ S   A   L+ +
Sbjct: 255 FDGMAMTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVASGMLSEV 314

Query: 333 NKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGL 392
              + MH + VK GF +D      LIQMY+  G +  A  +F  +  K    WTAMI G 
Sbjct: 315 GFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGY 374

Query: 393 GMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT 452
             +G   +AL+++  M    + P  +T    L AC+  G ++ G +   +  N  G    
Sbjct: 375 EKNGFPDKALEVYALMELHNVNPDDVTIASALAACACLGRLDVGIKLHELAQNK-GFIRY 433

Query: 453 IEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG-ARNHGNKDIGEYAANNL 511
           +     L+++  ++ ++++A    + M  + + V W S+++G   NH + D   Y    L
Sbjct: 434 VVVANALLEMYAKSKHIDKAIEVFKFMAEK-DVVSWSSMIAGFCFNHRSFDALYYFRYML 492

Query: 512 IKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRG 549
             V P+++     LS   AA G      E+   + + G
Sbjct: 493 GHVKPNSVTFIAALSAC-AATGALRSGKEIHAYVLRCG 529



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 88/362 (24%), Positives = 151/362 (41%), Gaps = 22/362 (6%)

Query: 202 GEVEVAMKLFDEMPDRD----------LFSWTCLVD-GFSKCGKVEIAREIFYRMPNRNL 250
           G++  A+ L +  P+            L  W   VD G   C + +         P+  L
Sbjct: 78  GQLAQALWLLESSPEPPDEGAYVALFRLCEWRRAVDAGMRACARADAEH------PSFGL 131

Query: 251 VSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIG 310
              NAM++  ++ G++  A  +F  M  RD+ +WN M+ GY   G   EAL+L   ML  
Sbjct: 132 RLGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWA 191

Query: 311 DVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESA 370
            + P+  T    L    G+     GR +H+++++ GF  +  +   L+ MY+KCG I +A
Sbjct: 192 GMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAA 251

Query: 371 LTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHA 430
             VF  ++      W AMI G   +      L+LF  M    ++P  +T   V  A    
Sbjct: 252 RKVFDGMAMTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVASGML 311

Query: 431 GLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMS 490
             V   +      +   G    +     L+ +    G + +A      M  + + + W +
Sbjct: 312 SEVGFAKEMHGFAVKR-GFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETK-DAMSWTA 369

Query: 491 LLSGARNHG--NKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548
           ++SG   +G  +K +  YA   L  V PD +          A  G+ D   ++ E+ + +
Sbjct: 370 MISGYEKNGFPDKALEVYALMELHNVNPDDV-TIASALAACACLGRLDVGIKLHELAQNK 428

Query: 549 GF 550
           GF
Sbjct: 429 GF 430


>gi|115456187|ref|NP_001051694.1| Os03g0816600 [Oryza sativa Japonica Group]
 gi|113550165|dbj|BAF13608.1| Os03g0816600, partial [Oryza sativa Japonica Group]
          Length = 708

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 217/594 (36%), Positives = 337/594 (56%), Gaps = 44/594 (7%)

Query: 137 AIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLID 196
           A++  +Q+H      G   D+F  + L+  YA  G++   R +F+ +  ++++SWN L  
Sbjct: 118 ALRPLRQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIPRRNVMSWNILFG 177

Query: 197 GYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMP---------- 246
           GY+K G++  A KLFDEMP+R++ +W  +V G +  G  E +   F  M           
Sbjct: 178 GYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEFG 237

Query: 247 -----------------------------NRNLVSWNAMINGYMKAGDVDSACELFDDME 277
                                        +R++   +++ + YM+ G +     +   + 
Sbjct: 238 LGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLP 297

Query: 278 IRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRW 337
              +++ N++IAG   NG    ALE    M    V  +  T VSA+S+ + LA L +G+ 
Sbjct: 298 SLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQ 357

Query: 338 MHSYIVKNGFVVDGVLG--TLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMH 395
           +H  ++K G  VD V+   T L+ MYS+CG +  +  VF           +AMI   G H
Sbjct: 358 IHGQVMKAG--VDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFH 415

Query: 396 GMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEH 455
           G   +A++LF +M   G +P+ +TF+ +L ACSH+GL  +G   F +M   YG++P+++H
Sbjct: 416 GHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKTYGMQPSVKH 475

Query: 456 YGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVA 515
           Y C+VD+L R+G L+EA++ I SMP+ P+ VIW +LLS  +   N D+ E  A  +I++ 
Sbjct: 476 YTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAERIAKRVIELD 535

Query: 516 PDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSH 575
           P     YV+LSNI A + +W  VSEVR+ M+    RK+PG S +E +G +H+F  GD+SH
Sbjct: 536 PHDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHIHQFCTGDESH 595

Query: 576 PQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVK 635
           P+  EI   L EM  K++  G+ PD + VL  +ED+ EKE  L +HSE+LAIAF  +++ 
Sbjct: 596 PRQKEIDECLEEMMAKIRQCGYSPDMSMVLHDMEDE-EKEVSLSHHSEKLAIAFAFLSLP 654

Query: 636 SRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
              PIR++KNLRVC+DCH   KL+S +  REI+VRD SRFHHFK+G CSC+D+W
Sbjct: 655 EGVPIRVMKNLRVCDDCHLAIKLMSQVTGREIVVRDVSRFHHFKDGRCSCRDYW 708



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 79/354 (22%), Positives = 150/354 (42%), Gaps = 42/354 (11%)

Query: 21  SRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDR 80
           +RL  ++ +     +  +QLHA +  +        ++ L+  Y D  + +L  AR +F+R
Sbjct: 106 ARLFSHLFRACRALRPLRQLHAFAATSGAATDRFTANHLMLAYAD--LGDLTAARELFER 163

Query: 81  ILQHPSLVLYNLLIKCYVFN--------------QRS-----------------HEALTL 109
           I +  +++ +N+L   Y+ N              +R+                  E+L  
Sbjct: 164 IPRR-NVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGF 222

Query: 110 FCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAK 169
           F D+    + PD F L  V +  A L  +  G+Q+H  V + G   D  V SSL  MY +
Sbjct: 223 FLDMRREGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMR 282

Query: 170 FGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFS-WTCLVDG 228
            G +  G  V   +    +VS N +I G  + G+ E A++ F  M    + +     V  
Sbjct: 283 CGCLQEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSA 342

Query: 229 FSKCGKV-------EIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDL 281
            S C  +       +I  ++     ++ +     +++ Y + G +  +  +F      D 
Sbjct: 343 ISSCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDT 402

Query: 282 ITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKG 335
              ++MI+ Y  +G   +A+EL + M+ G   P+D T ++ L A +   +  +G
Sbjct: 403 FLLSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEG 456



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 128/299 (42%), Gaps = 15/299 (5%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +Q+HA  V++ L     + S L  +Y+      L    ++  R+L   S+V  N +I   
Sbjct: 255 RQVHAYVVRSGLDRDMCVGSSLAHMYM--RCGCLQEGEAVL-RMLPSLSIVSCNTIIAGR 311

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
             N  S  AL  FC +    +  D  T    I   + L A+ +G+QIHG V K G     
Sbjct: 312 TQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVV 371

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM--- 214
            V++ LV MY++ G +    RVF      D    + +I  Y   G  + A++LF +M   
Sbjct: 372 PVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQMMNG 431

Query: 215 -PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR-----NLVSWNAMINGYMKAGDVDS 268
             +    ++  L+   S  G  E   + F  M        ++  +  +++   ++G +D 
Sbjct: 432 GAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKTYGMQPSVKHYTCVVDLLGRSGCLDE 491

Query: 269 ACELFDDMEIR-DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326
           A  L   M +  D + W ++++  +    F  A  + + ++  D  P+D+     LS +
Sbjct: 492 AEALILSMPLTPDGVIWKTLLSACKTQKNFDMAERIAKRVIELD--PHDSASYVLLSNI 548


>gi|297602077|ref|NP_001052059.2| Os04g0118700 [Oryza sativa Japonica Group]
 gi|222628272|gb|EEE60404.1| hypothetical protein OsJ_13579 [Oryza sativa Japonica Group]
 gi|255675134|dbj|BAF13973.2| Os04g0118700 [Oryza sativa Japonica Group]
          Length = 856

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 234/672 (34%), Positives = 372/672 (55%), Gaps = 23/672 (3%)

Query: 38  QQLHALSVKTNLIY-HSGIS-SRLLSLYVDPHINNLHYARSIFDRILQ-HPSLVLYNLLI 94
           ++ HA ++K  L++ H   + + LLS+Y    +  +  A+ +F         +V +N ++
Sbjct: 188 REAHAFALKNGLLHGHQRFAFNALLSMYA--RLGLVADAQRLFAGATPGRGDVVTWNTMV 245

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLG-F 153
              V +    EA+    D++   + PD  T    +   +RL  +  G+++H  V K    
Sbjct: 246 SVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDEL 305

Query: 154 GFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD--KDLVSWNCLIDGYVKKGEVEVAMKLF 211
             + FV S+LV MYA   ++   R+VFD + D  K L  WN +I GY + G  E A++LF
Sbjct: 306 AANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLF 365

Query: 212 DEMPDRDLF--SWTCLVDGFSKC-------GKVEIAREIFYRMPNRNLVSWNAMINGYMK 262
             M     F    T +      C       GK  +   +  R    N    NA+++ Y +
Sbjct: 366 ARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYAR 425

Query: 263 AGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALEL---LETMLIGDVLPNDATL 319
            G  D A  +F  +++ D+++WN++I G  + G   +A +L   ++ +  G V+PN  TL
Sbjct: 426 LGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITL 485

Query: 320 VSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK 379
           ++ L   A LA   +G+ +H Y V++    D  +G+ L+ MY+KCG +  +  VF  + +
Sbjct: 486 MTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPR 545

Query: 380 KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG-MKPTAITFIGVLNACSHAGLVNDGRR 438
           +    W  +I+  GMHG+  +A  LF++M   G  +P  +TF+  L ACSH+G+V+ G +
Sbjct: 546 RNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQ 605

Query: 439 YFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFV-IWMSLLSGARN 497
            F+ M  D+G+EPT +   C+VDIL R G L+EA + + SM      V  W ++L   R 
Sbjct: 606 LFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMETGEQQVSAWSTMLGACRL 665

Query: 498 HGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSS 557
           H N  +GE A   L+++ P+    YV+L NIY+AAGQW + +EVR  M++RG  K+PG S
Sbjct: 666 HRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCS 725

Query: 558 SIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAE 617
            IE  G +H F+ G+ +HP ++E+H+ +  +  ++ A G+ PDT+ VL  ++D  +K A 
Sbjct: 726 WIEVDGAIHRFMAGESAHPASEEVHAHMEALWGEMVARGYTPDTSCVLHDMDD-GDKAAV 784

Query: 618 LENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHH 677
           L  HSE+LAIAFGL+     + IR+ KNLRVCNDCH   K LS +  REI++RD  RFHH
Sbjct: 785 LRCHSEKLAIAFGLLRAAPGATIRVAKNLRVCNDCHEAAKFLSKMVGREIVLRDVRRFHH 844

Query: 678 FKNGSCSCKDFW 689
           F+NG CSC D+W
Sbjct: 845 FRNGQCSCGDYW 856



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 115/257 (44%), Gaps = 11/257 (4%)

Query: 254 NAMINGYMKAGDVDSACELFDDME--IRDLITWNSMIAGYELNGRFMEALELLETMLIGD 311
           NA++  Y + G + +A E+F  +     D +++NS+I+   L  R+  AL  L  ML G 
Sbjct: 100 NALLTAYARCGRLAAALEVFGSISDSAHDAVSFNSLISALCLFRRWDHALAALRAMLAGG 159

Query: 312 VLPNDATLVSALSAV----AGLAVLNKGRWMHSYIVKNGFV--VDGVLGTLLIQMYSKCG 365
                 TLVS L AV    A  A +  GR  H++ +KNG +          L+ MY++ G
Sbjct: 160 HPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLG 219

Query: 366 SIESALTVFRAISKKK--VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGV 423
            +  A  +F   +  +  V  W  M+  L   GM  +A+     M  +G++P  +TF   
Sbjct: 220 LVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASA 279

Query: 424 LNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP-MR 482
           L ACS   L++ GR     +I D  +         LVD+      + +A+   + +P   
Sbjct: 280 LPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSG 339

Query: 483 PNFVIWMSLLSGARNHG 499
               +W +++ G    G
Sbjct: 340 KQLGMWNAMICGYAQAG 356


>gi|225452893|ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Vitis vinifera]
          Length = 632

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 227/617 (36%), Positives = 349/617 (56%), Gaps = 58/617 (9%)

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGF--DKFVLSSLVSMYAKFGEIDLGRRVFDAM-- 183
           +++  AR  ++  G+++H  +   G     + F+ ++L+  YA  G     R+VFD +  
Sbjct: 19  LLRSCARESSLDIGERLHATIITTGIAGAPETFLHNALLQFYASCGCAWQARKVFDEIPH 78

Query: 184 DDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKCGKVEI 237
             KD V W  L+  +V+    + A+ +F EM      PD    +  CL  G ++ G V +
Sbjct: 79  SHKDTVDWTTLMGCFVRHNVSDEALLIFVEMRRCGVKPDE--VTLVCLFGGCARLGDVVV 136

Query: 238 -----------------------------------AREIFYRMPNRNLVSWNAMINGYMK 262
                                              AR +FY M  +++VSW  +++G ++
Sbjct: 137 GAQGHGCMVKMGLGGVEKACNAVMDMYAKSGLMGEARRVFYEMKGQSVVSWTVILDGVIR 196

Query: 263 AGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIG-DVLPNDATLVS 321
           +  V +   +FD+M  R+ + W  MIAGY  +G   E+  L+  M+   ++  N  TL S
Sbjct: 197 SEGVRNGRVVFDEMPERNEVAWTIMIAGYLDSGLTQESFALVREMIFDLEMELNYVTLCS 256

Query: 322 ALSAVAGLAVLNKGRWMHSYIVKNGFV-VDGVLGTLLIQMYSKCGSIESALTVFRAISKK 380
            L+A +    L  GRW+H+Y +K     ++ ++GT ++ MY+KCG I  A   F+ + ++
Sbjct: 257 ILTACSQSGDLMMGRWVHAYALKTKEKELNIMVGTAMVDMYAKCGRIHIAFKFFKKMPQR 316

Query: 381 KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYF 440
            V  W AM+ GL MHG+   ALD+F +M +   KP  +TF  VL+ACSH+GLV+ G  YF
Sbjct: 317 NVVSWNAMLSGLAMHGLGRAALDIFPQMFKEA-KPDDVTFTSVLSACSHSGLVDQGCFYF 375

Query: 441 NMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGN 500
             + + YGI P +EHY C+VD+L R G LEEA+  +  MP+RPN V+  SLL     HG 
Sbjct: 376 GNLESVYGITPKVEHYACMVDLLGRAGRLEEAEILVREMPIRPNEVVLGSLLGSCSIHGK 435

Query: 501 KDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIE 560
             +GE+    L+++ P     +++LSN+YA AG+ ++ + +R+++KKRG +K PG SSI 
Sbjct: 436 LQLGEHLLQELVQLDPQNTEYHILLSNMYALAGKQNRANSLRQVLKKRGIKKVPGMSSIH 495

Query: 561 HRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLC----IED----QK 612
             G +H+F  GDKSHP+T E+++ L EM  +L+ AG+ P+T          +ED    Q+
Sbjct: 496 VGGQVHQFSAGDKSHPRTREVYNMLDEMIPRLRLAGYAPNTALQTFAGCDSLEDDLVEQE 555

Query: 613 EKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDN 672
           EKE  L +HSE+LAI FGLI+     P+ I KNLR+C DCHS  K++S IYNREI++RD 
Sbjct: 556 EKEQALFSHSEKLAICFGLISTGPGVPLHIFKNLRICQDCHSAIKIVSKIYNREIVIRDR 615

Query: 673 SRFHHFKNGSCSCKDFW 689
           +RFH FK GSCSC D+W
Sbjct: 616 NRFHCFKEGSCSCCDYW 632


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/568 (36%), Positives = 323/568 (56%), Gaps = 41/568 (7%)

Query: 161 SSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL- 219
           ++L++ Y + G ++  + +FD M  ++ +SW  +I GY + G  E A+ L  E+    + 
Sbjct: 357 NALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGML 416

Query: 220 --------------------------------------FSWTCLVDGFSKCGKVEIAREI 241
                                                 F+   L+  + KC  +E AR++
Sbjct: 417 PSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQV 476

Query: 242 FYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEAL 301
           F RM  +++VSWN+ +   ++   +D A   FD+M  RD ++W ++I+ Y    +  EA+
Sbjct: 477 FSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAM 536

Query: 302 ELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMY 361
              +TM     LPN   L   L     L     G+ +H+  +K G   + ++   LI MY
Sbjct: 537 GAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMY 596

Query: 362 SKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFI 421
            KCG  +S   +F  + ++ +  W  +I G   HG+  +A+ ++  M   G+ P  +TF+
Sbjct: 597 FKCGCADSR-RIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFV 655

Query: 422 GVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPM 481
           G+LNACSHAGLV++G ++F  M  DYG+ P  EHY C+VD+L RTG ++ A+  I  MP+
Sbjct: 656 GLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPI 715

Query: 482 RPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEV 541
            P+ VIW +LL   + H N +IG+ AA  L ++ P   G YV+LSNIY++ G W +V+EV
Sbjct: 716 EPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEV 775

Query: 542 REMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDT 601
           R++MK++G  K+PG S  + +  +H FV GDK H Q +EI + L E+   LKA G+VPDT
Sbjct: 776 RKIMKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVATLEELYTLLKATGYVPDT 835

Query: 602 TQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSG 661
             VL  I D+++KE+ L  HSE+LA+A+ L+      PI+I+KNLR+C DCH+  K +S 
Sbjct: 836 EFVLHDI-DEEQKESSLLYHSEKLAVAYCLLATPKGMPIQILKNLRICGDCHTFIKFVSH 894

Query: 662 IYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           +  R+I +RD +RFHHF+NGSCSC+DFW
Sbjct: 895 VTKRQIDIRDGNRFHHFRNGSCSCEDFW 922



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 106/375 (28%), Positives = 198/375 (52%), Gaps = 6/375 (1%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           AR++F+++ +  +LV + ++I  Y   +   +A  +FC +    LLPD       +    
Sbjct: 177 ARNLFEKMPER-NLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVK 235

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEI-DLGRRVFDAMDDKDLVSWN 192
            LG +   + +  L  K GF  D  + ++++++Y++   + D   + F++M +++  +W+
Sbjct: 236 GLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWS 295

Query: 193 CLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS 252
            +I      G ++ A+ +++  P + +   T L+ G ++CG+++ AR +F ++P   +VS
Sbjct: 296 TMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGLAQCGRIDDARILFEQIPEPIVVS 355

Query: 253 WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDV 312
           WNA+I GYM+ G V+ A ELFD M  R+ I+W  MIAGY  NGR  EAL LL+ +    +
Sbjct: 356 WNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGM 415

Query: 313 LPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALT 372
           LP+ ++L S   A + +  L  G  +HS  VK G   +      LI MY KC ++E A  
Sbjct: 416 LPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQ 475

Query: 373 VFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGL 432
           VF  +  K +  W + +  L  + +  +A + F+ M    +    +++  +++A +HA  
Sbjct: 476 VFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNM----LSRDDVSWTTIISAYAHAEQ 531

Query: 433 VNDGRRYFNMMINDY 447
            N+    F  M  ++
Sbjct: 532 SNEAMGAFKTMFCEH 546



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 103/375 (27%), Positives = 187/375 (49%), Gaps = 15/375 (4%)

Query: 129 IKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDL 188
           I+   RLG + E ++    VF      D    +S++S Y   G  D  R ++DA+   ++
Sbjct: 41  IRDLGRLGRVGEARE----VFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNM 96

Query: 189 VSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR 248
            +   L+ GY + G V  A ++FD M +R+  +W  ++  + + G + +AR +F  MP+R
Sbjct: 97  RTGAILLSGYGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSR 156

Query: 249 NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETML 308
           ++ SWN+M+ GY  +  +  A  LF+ M  R+L++W  MI+GY       +A ++   M 
Sbjct: 157 DVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMH 216

Query: 309 IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSI- 367
              +LP+ +   SALSAV GL  L+    +    +K GF  D V+GT ++ +YS+  S+ 
Sbjct: 217 REGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVL 276

Query: 368 ESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNAC 427
           ++A+  F ++ ++    W+ MI  L   G    A+ ++    R  +K  A     ++   
Sbjct: 277 DTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYE---RDPVKSIACR-TALITGL 332

Query: 428 SHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVI 487
           +  G ++D R  F  +      EP +  +  L+    + G + EAK   + MP R N + 
Sbjct: 333 AQCGRIDDARILFEQI-----PEPIVVSWNALITGYMQNGMVNEAKELFDKMPFR-NTIS 386

Query: 488 WMSLLSGARNHGNKD 502
           W  +++G   +G  +
Sbjct: 387 WAGMIAGYAQNGRSE 401



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 140/296 (47%), Gaps = 43/296 (14%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQH---------PSLVL 89
           Q+H+L+VK    ++S   + L+++Y      N+ YAR +F R++            +LV 
Sbjct: 440 QVHSLAVKVGCQFNSFACNALITMY--GKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQ 497

Query: 90  YNLL---------------------IKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCV 128
            +LL                     I  Y   ++S+EA+  F  +     LP++  L  +
Sbjct: 498 NDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTIL 557

Query: 129 IKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDL 188
           +     LGA K G+QIH +  KLG   +  V ++L+SMY K G  D  RR+FD M+++D+
Sbjct: 558 LGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCGCAD-SRRIFDLMEERDI 616

Query: 189 VSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLF----SWTCLVDGFSKCGKVEIAREIFYR 244
            +WN +I GY + G    A+K++  M    +     ++  L++  S  G V+   + F  
Sbjct: 617 FTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKS 676

Query: 245 MPNRNLVS-----WNAMINGYMKAGDVDSACELFDDMEIR-DLITWNSMIAGYELN 294
           M     ++     +  M++   + GDV  A +   DM I  D + W++++   +++
Sbjct: 677 MSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIH 732



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 47/231 (20%), Positives = 94/231 (40%), Gaps = 38/231 (16%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           QQ+H +++K  +     +++ L+S+Y      +   +R IFD +++   +  +N +I  Y
Sbjct: 571 QQIHTVAIKLGMDSELIVANALISMYFKCGCAD---SRRIFD-LMEERDIFTWNTIITGY 626

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
             +    EA+ ++  +    +LP+  T   ++   +  G + EG +     FK       
Sbjct: 627 AQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKF----FK------- 675

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP-D 216
                  SM   +G   L               + C++D   + G+V+ A +   +MP +
Sbjct: 676 -------SMSQDYGLTPLPEH------------YACMVDLLGRTGDVQGAEQFIYDMPIE 716

Query: 217 RDLFSWTCLVDGFSKCGKVEI---AREIFYRMPNRNLVSWNAMINGYMKAG 264
            D   W+ L+         EI   A E  +R+   N  ++  + N Y   G
Sbjct: 717 PDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLG 767


>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 214/588 (36%), Positives = 342/588 (58%), Gaps = 14/588 (2%)

Query: 112 DLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFG 171
           DL   ++  D      ++K       + +G+ +HG + +  F  D  + ++L++MYAK G
Sbjct: 41  DLEGSYIPVDRRFYNTLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCG 100

Query: 172 EIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCL 225
            ++  R+VFD M ++D V+W  LI GY +      A+ LF++M      P+   F+ + +
Sbjct: 101 SLEEARKVFDKMPERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNE--FTLSSV 158

Query: 226 VDGFSK----CGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDL 281
           +   +     C   ++         + N+   +A+++ Y + G +D A  +FD +E R+ 
Sbjct: 159 IKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRND 218

Query: 282 ITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSY 341
           ++WN++IAG+       +ALEL + ML     P+  +  S   A +    L +G+W+H+Y
Sbjct: 219 VSWNALIAGHARRCGTEKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQGKWVHAY 278

Query: 342 IVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQA 401
           ++K+G  +    G  L+ MY+K GSI  A  +F  ++K+ V  W +++     HG   +A
Sbjct: 279 MIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGNEA 338

Query: 402 LDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVD 461
           +  F +M R G++P  I+F+ VL ACSH+GL+++G  Y+ +M  D GI     HY  +VD
Sbjct: 339 VCWFEEMRRGGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVLEAWHYVTIVD 397

Query: 462 ILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGC 521
           +L R G L  A   IE MP+ P   IW +LL+  R H N ++G YAA ++ ++ PD  G 
Sbjct: 398 LLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGP 457

Query: 522 YVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEI 581
           +V+L NIYA+ G+W+  + VR+ MK+ G +K+P  S +E    +H FV  D+ HPQ +EI
Sbjct: 458 HVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEI 517

Query: 582 HSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIR 641
             K  E+  K+K  G+VPDT+ V++ + DQ+E+E  L+ HSE++A+AF L+N    S I 
Sbjct: 518 ARKWEEVLAKIKELGYVPDTSHVIVHV-DQQEREVNLQYHSEKIALAFALLNTPPGSTIH 576

Query: 642 IVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           I KN+RVC DCHS  KL S    REIIVRD +RFHHFK+G+CSCKD+W
Sbjct: 577 IKKNIRVCGDCHSAIKLASKAVGREIIVRDTNRFHHFKDGACSCKDYW 624



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 103/352 (29%), Positives = 180/352 (51%), Gaps = 16/352 (4%)

Query: 55  ISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL 114
           +++ LL++Y      +L  AR +FD++ +    V +  LI  Y  + R  +AL LF  +L
Sbjct: 88  MNNTLLNMYAK--CGSLEEARKVFDKMPER-DFVTWTTLISGYSQHDRPFDALVLFNQML 144

Query: 115 DRFLLPDNFTLPCVIKGAA--RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGE 172
                P+ FTL  VIK AA  R G    G Q+HG   K GF  +  V S+L+ +Y ++G 
Sbjct: 145 RFGFSPNEFTLSSVIKAAAAERRGCC--GHQLHGFCVKCGFDSNVHVGSALLDLYTRYGL 202

Query: 173 IDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDG 228
           +D  + VFDA++ ++ VSWN LI G+ ++   E A++LF  M         FS+  L   
Sbjct: 203 MDDAQLVFDALESRNDVSWNALIAGHARRCGTEKALELFQGMLREGFRPSHFSYASLFGA 262

Query: 229 FSKCGKVEIAREIFYRM--PNRNLVSW--NAMINGYMKAGDVDSACELFDDMEIRDLITW 284
            S  G +E  + +   M      LV++  N +++ Y K+G +  A ++FD +  RD+++W
Sbjct: 263 CSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSW 322

Query: 285 NSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVK 344
           NS++  Y  +G   EA+   E M  G + PN+ + +S L+A +   +L++G   +  + K
Sbjct: 323 NSLLTAYAQHGFGNEAVCWFEEMRRGGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKK 382

Query: 345 NGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS-KKKVGHWTAMIVGLGMH 395
           +G V++      ++ +  + G +  AL     +  +     W A++    MH
Sbjct: 383 DGIVLEAWHYVTIVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMH 434



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 108/422 (25%), Positives = 184/422 (43%), Gaps = 54/422 (12%)

Query: 135 LGAIKEGKQIHGLVFKLGFGFD----KFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVS 190
           L  +K  +++H L   L    D    KF  + L   Y     I + RR ++ +  K    
Sbjct: 10  LSQLKLSRRLHSLPAPLSEDSDDESLKFPSNDLEGSY-----IPVDRRFYNTLLKK---- 60

Query: 191 WNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNL 250
             C +   + +G + V   L   +   DL     L++ ++KCG +E AR++F +MP R+ 
Sbjct: 61  --CTVFKLLTQGRI-VHGHLIQSIFRHDLVMNNTLLNMYAKCGSLEEARKVFDKMPERDF 117

Query: 251 VSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIG 310
           V+W  +I+GY +                               + R  +AL L   ML  
Sbjct: 118 VTWTTLISGYSQ-------------------------------HDRPFDALVLFNQMLRF 146

Query: 311 DVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESA 370
              PN+ TL S + A A       G  +H + VK GF  +  +G+ L+ +Y++ G ++ A
Sbjct: 147 GFSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDA 206

Query: 371 LTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHA 430
             VF A+  +    W A+I G        +AL+LF  M R G +P+  ++  +  ACS  
Sbjct: 207 QLVFDALESRNDVSWNALIAGHARRCGTEKALELFQGMLREGFRPSHFSYASLFGACSST 266

Query: 431 GLVNDGRRYFNMMINDYGIEPTIEHYG-CLVDILCRTGYLEEAKSTIESMPMRPNFVIWM 489
           G +  G+     MI     E  +   G  L+D+  ++G + +A+   + +  R + V W 
Sbjct: 267 GFLEQGKWVHAYMIKSG--EKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKR-DVVSWN 323

Query: 490 SLLSGARNH--GNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547
           SLL+    H  GN+ +  +       + P+ I    VL+   + +G  D+     E+MKK
Sbjct: 324 SLLTAYAQHGFGNEAVCWFEEMRRGGIRPNEISFLSVLTAC-SHSGLLDEGWHYYELMKK 382

Query: 548 RG 549
            G
Sbjct: 383 DG 384



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 123/262 (46%), Gaps = 16/262 (6%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
            QLH   VK     +  + S LL LY    +  +  A+ +FD  L+  + V +N LI  +
Sbjct: 172 HQLHGFCVKCGFDSNVHVGSALLDLYTRYGL--MDDAQLVFD-ALESRNDVSWNALIAGH 228

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
                + +AL LF  +L     P +F+   +    +  G +++GK +H  + K G     
Sbjct: 229 ARRCGTEKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVA 288

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM--- 214
           F  ++L+ MYAK G I   R++FD +  +D+VSWN L+  Y + G    A+  F+EM   
Sbjct: 289 FAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGNEAVCWFEEMRRG 348

Query: 215 ---PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLV--SWN--AMINGYMKAGDVD 267
              P+    S+  ++   S  G ++     +  M    +V  +W+   +++   +AGD++
Sbjct: 349 GIRPNE--ISFLSVLTACSHSGLLDEGWHYYELMKKDGIVLEAWHYVTIVDLLGRAGDLN 406

Query: 268 SACELFDDMEIRDLIT-WNSMI 288
            A    ++M I      W +++
Sbjct: 407 RALRFIEEMPIEPTAAIWKALL 428


>gi|297850056|ref|XP_002892909.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297338751|gb|EFH69168.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1038

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 227/665 (34%), Positives = 370/665 (55%), Gaps = 13/665 (1%)

Query: 34   HKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLL 93
             K  + +H L VK        + + LL +Y          A  +F + +    L+ +N L
Sbjct: 378  QKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGA--GRSEEADLVFKQ-MPTKDLISWNSL 434

Query: 94   IKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGF 153
            +  +V + RS +AL + C ++      +  T    +          +G+ +HGLV   G 
Sbjct: 435  MASFVNDGRSLDALGILCSMIRTGKSVNYVTFTSALAACFSPEFFDKGRILHGLVVVSGL 494

Query: 154  GFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDE 213
              ++ + ++LVSMY K G +   RRV   M  +D+V+WN LI GY +  + + A+  F  
Sbjct: 495  FDNQIIGNALVSMYGKIGGMSTSRRVLLQMPRRDVVAWNALIGGYAENEDPDKALAAFQT 554

Query: 214  MPDRDLFS-WTCLVDGFSKC----GKVEIAREIFYRMPNRNLVS----WNAMINGYMKAG 264
            +    + + +  +V   S C      +E  + +   + +    S     N++I  Y K G
Sbjct: 555  LRVEGVSANYITVVSVLSACLVPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCG 614

Query: 265  DVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS 324
            D+ S+ +LF+ ++ R +ITWN+++A    +G   E L+L+  M    +  +  +    LS
Sbjct: 615  DLSSSQDLFNGLDNRSIITWNAILAANAHHGHGEEVLKLVSKMRSFGLSLDQFSFSEGLS 674

Query: 325  AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGH 384
            A A LAVL +G+ +H   VK GF +D  +      MYSKCG I   + +      + +  
Sbjct: 675  AAAKLAVLEEGQQLHGLAVKLGFELDCFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPS 734

Query: 385  WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMI 444
            W  +I  LG HG   +  + F++M  MG+KP  +TF+ +L ACSH GLV+ G  Y++M+ 
Sbjct: 735  WNILISALGRHGYFEEVCETFHEMLEMGIKPGHVTFVSLLTACSHGGLVDQGLAYYDMIA 794

Query: 445  NDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIG 504
             D+G+EP IEH  C++D+L R+G L EA++ I  MPM+PN ++W SLL+  + H + D G
Sbjct: 795  KDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHRDLDRG 854

Query: 505  EYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGV 564
              AA NL K+ P+    +V+ SN++A  G+W+ V  VR+ M  +  +K    S ++ +  
Sbjct: 855  RKAAENLSKLEPEDDSVFVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDK 914

Query: 565  LHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSER 624
            +  F +GD++HPQT EI++KL +++  +K +G+V DT+Q L    D+++KE  L NHSER
Sbjct: 915  VSSFGIGDRTHPQTMEIYAKLEDIKKLIKESGYVADTSQALQ-DTDEEQKEHNLWNHSER 973

Query: 625  LAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCS 684
            LA+A+ L++    S +RI KNLR+C+DCHSV K +S +  R I++RD  RFHHF++G CS
Sbjct: 974  LALAYALMSTPEGSTVRIFKNLRICSDCHSVYKFVSRVIGRRIVLRDQYRFHHFESGLCS 1033

Query: 685  CKDFW 689
            CKD+W
Sbjct: 1034 CKDYW 1038



 Score =  162 bits (411), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 139/550 (25%), Positives = 247/550 (44%), Gaps = 25/550 (4%)

Query: 24  HWNI-------LKFSSTHKET--QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYA 74
           HWN          FS   +ET  + LHAL VK  +      ++ L+++Y       +  A
Sbjct: 55  HWNPELSCFDQTGFSQITRETTGRALHALCVKGLVRLSVLHTNTLINMYTK--FGRVKPA 112

Query: 75  RSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAAR 134
           R +FD++      V +N ++   V      E +  F  + D  + P +F +  ++    R
Sbjct: 113 RYLFDKMPVRNE-VSWNTMMSGIVRVGLYLEGMEFFQKMCDLGIKPSSFVIASLVTACGR 171

Query: 135 LGAI-KEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
            G++ +EG Q+HG V K G   D +V ++++ +Y  +G +   R+VF+ M D+++VSW  
Sbjct: 172 SGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTS 231

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDRDL-FSWTCLVDGFSKCGKVE---IAREIFYRMPNRN 249
           L+ GY  KGE E  + ++  M    +  +   +    S CG ++   + R+I  ++    
Sbjct: 232 LMVGYSDKGEPEEVIDIYKSMRGEGVECNENSMSLVISSCGLLKDESLGRQIIGQVIKSG 291

Query: 250 LVS----WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLE 305
           L S     N++I+ +   G+VD A  +F+ +  RD I+WNS++A Y  NG   E+  +  
Sbjct: 292 LESKLAVENSLISMFGNMGNVDYANYIFNQISERDTISWNSIVAAYAQNGHIEESSRIFN 351

Query: 306 TMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCG 365
            M       N  T+ + LS +  +     GR +H  +VK GF     +   L++MY+  G
Sbjct: 352 LMRRFHDEVNSTTVSTLLSVLGDVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAG 411

Query: 366 SIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN 425
             E A  VF+ +  K +  W +++      G +  AL +   M R G     +TF   L 
Sbjct: 412 RSEEADLVFKQMPTKDLISWNSLMASFVNDGRSLDALGILCSMIRTGKSVNYVTFTSALA 471

Query: 426 ACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNF 485
           AC      + GR    +++     +  I     LV +  + G +  ++  +  MP R + 
Sbjct: 472 ACFSPEFFDKGRILHGLVVVSGLFDNQIIG-NALVSMYGKIGGMSTSRRVLLQMPRR-DV 529

Query: 486 VIWMSLLSG-ARNHG-NKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVRE 543
           V W +L+ G A N   +K +  +    +  V+ + I    VLS         ++   +  
Sbjct: 530 VAWNALIGGYAENEDPDKALAAFQTLRVEGVSANYITVVSVLSACLVPGDLLERGKPLHA 589

Query: 544 MMKKRGFRKD 553
            +   GF  D
Sbjct: 590 YIVSAGFESD 599


>gi|225433177|ref|XP_002281549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130 [Vitis vinifera]
 gi|296083673|emb|CBI23662.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 230/666 (34%), Positives = 376/666 (56%), Gaps = 20/666 (3%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYV 98
           Q+HA +V     +   +++ L+ +Y     + +  A S+FDR+L+  ++V +  L+  Y+
Sbjct: 25  QVHAAAVNMGFGFDLIMNNDLIDMY--GKCSRVDLACSVFDRMLER-NVVSWTALMCGYL 81

Query: 99  FNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKF 158
               +  +L L C++    + P+ FT    +K    LG ++ G QIHG+  K GF +   
Sbjct: 82  QEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGVVENGMQIHGMCVKSGFEWVSV 141

Query: 159 VLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR- 217
           V ++ + MY+K G I +  +VF+ M  ++LVSWN +I G+  +G    ++ LF  M  + 
Sbjct: 142 VGNATIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAGHTHEGNGRKSLVLFQRMQGQG 201

Query: 218 ---DLFSWTCLVDGFSKCGKVEIAREIF-------YRMPNRNLVSWNAMINGYMKAGDVD 267
              D F++T  +      G +    +I        + +  RN+++ +A+++ Y K G + 
Sbjct: 202 EVPDEFTFTSTLKACGALGAIRGGTQIHASLITRGFPISIRNIIA-SAIVDLYAKCGYLF 260

Query: 268 SACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV- 326
            A ++FD +E ++LI+W+++I G+   G  +EA++L    L   V   D  ++S +  V 
Sbjct: 261 EAQKVFDRIEQKNLISWSALIQGFAQEGNLLEAMDLFRQ-LRESVSNVDGFVLSIMMGVF 319

Query: 327 AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWT 386
           A LA++ +G+ MH YI+K    +D  +   +I MY KCG  E A  +F  +  + V  WT
Sbjct: 320 ADLALVEQGKQMHCYILKVPSGLDISVANSIIDMYLKCGLTEEAERLFSEMQVRNVVSWT 379

Query: 387 AMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIND 446
            MI G G HG+  +A+ LFN+M   G++   + ++ +L+ACSH+GL+ + + YF+ + N+
Sbjct: 380 VMITGYGKHGLGEKAIHLFNRMQLDGIELDEVAYLALLSACSHSGLIRESQEYFSRLCNN 439

Query: 447 YGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEY 506
           + ++P IEHY C+VDIL R G L+EAK+ IE+M ++PN  IW +LLS  R HGN +IG  
Sbjct: 440 HQMKPNIEHYACMVDILGRAGQLKEAKNLIENMKLKPNEGIWQTLLSACRVHGNLEIGRE 499

Query: 507 AANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLH 566
               L ++  D    YV++SNIYA AG W +   VR+++K +G +K+ G S +E    +H
Sbjct: 500 VGEILFRMDTDNPVNYVMMSNIYAEAGYWKECERVRKLVKAKGLKKEAGQSWVEINKEIH 559

Query: 567 EFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLA 626
            F  GD +HP T++IH  L EM  ++K         +  L   +++ KE  L  HSE+LA
Sbjct: 560 FFYGGDDTHPLTEKIHEMLKEMERRVKEEVGYAYGLRFALHDVEEESKEENLRVHSEKLA 619

Query: 627 IAFGLI---NVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSC 683
           I   L+     K    IR+ KNLRVC DCH   K LS I  +  +VRD +RFH F++G C
Sbjct: 620 IGLALVCDGMEKKGGVIRVFKNLRVCGDCHEFIKGLSKILKKVFVVRDANRFHRFEDGLC 679

Query: 684 SCKDFW 689
           SC D+W
Sbjct: 680 SCGDYW 685



 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 112/437 (25%), Positives = 198/437 (45%), Gaps = 79/437 (18%)

Query: 125 LPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD 184
           L  +++  ++ G   +G Q+H     +GFGFD  + + L+ MY K   +DL   VFD M 
Sbjct: 7   LAKLLRNCSKNGLFDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDRML 66

Query: 185 DKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDRDLFS----------------- 221
           ++++VSW  L+ GY+++G  + ++ L  EM      P+   FS                 
Sbjct: 67  ERNVVSWTALMCGYLQEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGVVENGMQ 126

Query: 222 -----------WTCLV-----DGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGD 265
                      W  +V     D +SKCG++ +A ++F +MP RNLVSWNAMI G+   G 
Sbjct: 127 IHGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAGHTHEG- 185

Query: 266 VDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSA 325
                                       NGR  ++L L + M     +P++ T  S L A
Sbjct: 186 ----------------------------NGR--KSLVLFQRMQGQGEVPDEFTFTSTLKA 215

Query: 326 VAGLAVLNKGRWMHSYIVKNGFVVD--GVLGTLLIQMYSKCGSIESALTVFRAISKKKVG 383
              L  +  G  +H+ ++  GF +    ++ + ++ +Y+KCG +  A  VF  I +K + 
Sbjct: 216 CGALGAIRGGTQIHASLITRGFPISIRNIIASAIVDLYAKCGYLFEAQKVFDRIEQKNLI 275

Query: 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMM 443
            W+A+I G    G   +A+DLF ++              ++   +   LV  G++    +
Sbjct: 276 SWSALIQGFAQEGNLLEAMDLFRQLRESVSNVDGFVLSIMMGVFADLALVEQGKQMHCYI 335

Query: 444 IN-DYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKD 502
           +    G++ ++ +   ++D+  + G  EEA+     M +R N V W  +++G   HG   
Sbjct: 336 LKVPSGLDISVAN--SIIDMYLKCGLTEEAERLFSEMQVR-NVVSWTVMITGYGKHG--- 389

Query: 503 IGEYAANNLIKVAPDTI 519
           +GE A +   ++  D I
Sbjct: 390 LGEKAIHLFNRMQLDGI 406


>gi|38344863|emb|CAE01289.2| OSJNBa0020P07.6 [Oryza sativa Japonica Group]
          Length = 854

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 234/672 (34%), Positives = 372/672 (55%), Gaps = 23/672 (3%)

Query: 38  QQLHALSVKTNLIY-HSGIS-SRLLSLYVDPHINNLHYARSIFDRILQ-HPSLVLYNLLI 94
           ++ HA ++K  L++ H   + + LLS+Y    +  +  A+ +F         +V +N ++
Sbjct: 186 REAHAFALKNGLLHGHQRFAFNALLSMYA--RLGLVADAQRLFAGATPGRGDVVTWNTMV 243

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLG-F 153
              V +    EA+    D++   + PD  T    +   +RL  +  G+++H  V K    
Sbjct: 244 SVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDEL 303

Query: 154 GFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD--KDLVSWNCLIDGYVKKGEVEVAMKLF 211
             + FV S+LV MYA   ++   R+VFD + D  K L  WN +I GY + G  E A++LF
Sbjct: 304 AANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLF 363

Query: 212 DEMPDRDLF--SWTCLVDGFSKC-------GKVEIAREIFYRMPNRNLVSWNAMINGYMK 262
             M     F    T +      C       GK  +   +  R    N    NA+++ Y +
Sbjct: 364 ARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYAR 423

Query: 263 AGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALEL---LETMLIGDVLPNDATL 319
            G  D A  +F  +++ D+++WN++I G  + G   +A +L   ++ +  G V+PN  TL
Sbjct: 424 LGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITL 483

Query: 320 VSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK 379
           ++ L   A LA   +G+ +H Y V++    D  +G+ L+ MY+KCG +  +  VF  + +
Sbjct: 484 MTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPR 543

Query: 380 KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG-MKPTAITFIGVLNACSHAGLVNDGRR 438
           +    W  +I+  GMHG+  +A  LF++M   G  +P  +TF+  L ACSH+G+V+ G +
Sbjct: 544 RNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQ 603

Query: 439 YFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFV-IWMSLLSGARN 497
            F+ M  D+G+EPT +   C+VDIL R G L+EA + + SM      V  W ++L   R 
Sbjct: 604 LFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMETGEQQVSAWSTMLGACRL 663

Query: 498 HGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSS 557
           H N  +GE A   L+++ P+    YV+L NIY+AAGQW + +EVR  M++RG  K+PG S
Sbjct: 664 HRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCS 723

Query: 558 SIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAE 617
            IE  G +H F+ G+ +HP ++E+H+ +  +  ++ A G+ PDT+ VL  ++D  +K A 
Sbjct: 724 WIEVDGAIHRFMAGESAHPASEEVHAHMEALWGEMVARGYTPDTSCVLHDMDD-GDKAAV 782

Query: 618 LENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHH 677
           L  HSE+LAIAFGL+     + IR+ KNLRVCNDCH   K LS +  REI++RD  RFHH
Sbjct: 783 LRCHSEKLAIAFGLLRAAPGATIRVAKNLRVCNDCHEAAKFLSKMVGREIVLRDVRRFHH 842

Query: 678 FKNGSCSCKDFW 689
           F+NG CSC D+W
Sbjct: 843 FRNGQCSCGDYW 854



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 115/257 (44%), Gaps = 11/257 (4%)

Query: 254 NAMINGYMKAGDVDSACELFDDME--IRDLITWNSMIAGYELNGRFMEALELLETMLIGD 311
           NA++  Y + G + +A E+F  +     D +++NS+I+   L  R+  AL  L  ML G 
Sbjct: 98  NALLTAYARCGRLAAALEVFGSISDSAHDAVSFNSLISALCLFRRWDHALAALRAMLAGG 157

Query: 312 VLPNDATLVSALSAV----AGLAVLNKGRWMHSYIVKNGFV--VDGVLGTLLIQMYSKCG 365
                 TLVS L AV    A  A +  GR  H++ +KNG +          L+ MY++ G
Sbjct: 158 HPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLG 217

Query: 366 SIESALTVFRAISKKK--VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGV 423
            +  A  +F   +  +  V  W  M+  L   GM  +A+     M  +G++P  +TF   
Sbjct: 218 LVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASA 277

Query: 424 LNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP-MR 482
           L ACS   L++ GR     +I D  +         LVD+      + +A+   + +P   
Sbjct: 278 LPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSG 337

Query: 483 PNFVIWMSLLSGARNHG 499
               +W +++ G    G
Sbjct: 338 KQLGMWNAMICGYAQAG 354


>gi|116308873|emb|CAH66009.1| H0613H07.7 [Oryza sativa Indica Group]
 gi|116317921|emb|CAH65944.1| H0716A07.2 [Oryza sativa Indica Group]
          Length = 854

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 234/672 (34%), Positives = 372/672 (55%), Gaps = 23/672 (3%)

Query: 38  QQLHALSVKTNLIY-HSGIS-SRLLSLYVDPHINNLHYARSIFDRILQ-HPSLVLYNLLI 94
           ++ HA ++K  L++ H   + + LLS+Y    +  +  A+ +F         +V +N ++
Sbjct: 186 REAHAFALKNGLLHGHQRFAFNALLSMYA--RLGLVADAQRLFAGATPGRGDVVTWNTMV 243

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLG-F 153
              V +    EA+    D++   + PD  T    +   +RL  +  G+++H  V K    
Sbjct: 244 SVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDEL 303

Query: 154 GFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD--KDLVSWNCLIDGYVKKGEVEVAMKLF 211
             + FV S+LV MYA   ++   R+VFD + D  K L  WN +I GY + G  E A++LF
Sbjct: 304 AANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLF 363

Query: 212 DEMPDRDLF--SWTCLVDGFSKC-------GKVEIAREIFYRMPNRNLVSWNAMINGYMK 262
             M     F    T +      C       GK  +   +  R    N    NA+++ Y +
Sbjct: 364 ARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYAR 423

Query: 263 AGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALEL---LETMLIGDVLPNDATL 319
            G  D A  +F  +++ D+++WN++I G  + G   +A +L   ++ +  G V+PN  TL
Sbjct: 424 LGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITL 483

Query: 320 VSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK 379
           ++ L   A LA   +G+ +H Y V++    D  +G+ L+ MY+KCG +  +  VF  + +
Sbjct: 484 MTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPR 543

Query: 380 KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG-MKPTAITFIGVLNACSHAGLVNDGRR 438
           +    W  +I+  GMHG+  +A  LF++M   G  +P  +TF+  L ACSH+G+V+ G +
Sbjct: 544 RNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQ 603

Query: 439 YFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFV-IWMSLLSGARN 497
            F+ M  D+G+EPT +   C+VDIL R G L+EA + + SM      V  W ++L   R 
Sbjct: 604 LFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMEAGEQQVSAWSTMLGACRL 663

Query: 498 HGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSS 557
           H N  +GE A   L+++ P+    YV+L NIY+AAGQW + +EVR  M++RG  K+PG S
Sbjct: 664 HRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCS 723

Query: 558 SIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAE 617
            IE  G +H F+ G+ +HP ++E+H+ +  +  ++ A G+ PDT+ VL  ++D  +K A 
Sbjct: 724 WIEVDGAIHRFMAGESAHPASEEVHAHMEALWGEMVARGYTPDTSCVLHDMDD-GDKAAV 782

Query: 618 LENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHH 677
           L  HSE+LAIAFGL+     + IR+ KNLRVCNDCH   K LS +  REI++RD  RFHH
Sbjct: 783 LRCHSEKLAIAFGLLRAAPGATIRVAKNLRVCNDCHEAAKFLSKMVGREIVLRDVRRFHH 842

Query: 678 FKNGSCSCKDFW 689
           F+NG CSC D+W
Sbjct: 843 FRNGQCSCGDYW 854



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 115/257 (44%), Gaps = 11/257 (4%)

Query: 254 NAMINGYMKAGDVDSACELFDDME--IRDLITWNSMIAGYELNGRFMEALELLETMLIGD 311
           NA++  Y + G + +A E+F  +     D +++NS+I+   L  R+  AL  L  ML G 
Sbjct: 98  NALLTAYARCGRLAAALEVFGSISDSAHDAVSFNSLISALCLFRRWDHALAALRAMLAGG 157

Query: 312 VLPNDATLVSALSAV----AGLAVLNKGRWMHSYIVKNGFV--VDGVLGTLLIQMYSKCG 365
                 TLVS L AV    A  A +  GR  H++ +KNG +          L+ MY++ G
Sbjct: 158 HPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLG 217

Query: 366 SIESALTVFRAISKKK--VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGV 423
            +  A  +F   +  +  V  W  M+  L   GM  +A+     M  +G++P  +TF   
Sbjct: 218 LVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASA 277

Query: 424 LNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP-MR 482
           L ACS   L++ GR     +I D  +         LVD+      + +A+   + +P   
Sbjct: 278 LPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSG 337

Query: 483 PNFVIWMSLLSGARNHG 499
               +W +++ G    G
Sbjct: 338 KQLGMWNAMICGYAQAG 354


>gi|414865780|tpg|DAA44337.1| TPA: hypothetical protein ZEAMMB73_255594 [Zea mays]
          Length = 665

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 220/613 (35%), Positives = 336/613 (54%), Gaps = 41/613 (6%)

Query: 86  SLVLYNLLIKCYVFNQRSHEALTLFCDLLDR--FLLPDNFTLPCVIKGAARLGAIKEGKQ 143
           + V +N+LI+    +    +AL LF  +  R     PD++T P  +K  +    +  G Q
Sbjct: 85  TTVCFNVLIRALTASSLHRDALVLFASMRPRGPACFPDHYTYPLALKSCSASKDLLLGLQ 144

Query: 144 IHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGE 203
           IH  V KL    + +V  S +SMY++ G                                
Sbjct: 145 IHSAVAKLRLDRNVYVAHSAISMYSRCGR------------------------------- 173

Query: 204 VEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYR-------MPNRNLVSWNAM 256
            E A ++FD MP RD+ SW  ++ GF++ G  + A E+F +       MP+   ++    
Sbjct: 174 PEDAYRVFDGMPHRDVVSWNAMIAGFARVGLFDRAIEVFKQFVVLQGSMPDAGTMAGILP 233

Query: 257 INGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPND 316
             G  K  D+     +FD+M+ ++LI+WN+M+A Y  N   ++A+EL   M   +V P+ 
Sbjct: 234 AMGNAKPDDIRFVRRVFDNMQFKELISWNAMLAVYANNEFHVKAVELFMLMEKDEVEPDS 293

Query: 317 ATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRA 376
            TL + L     L+  + G+ +H  I +     + +L   L+ MY+ CG ++ A  +F  
Sbjct: 294 ITLATVLPPCGELSAFSVGKRIHEIIKRKNMCPNLLLENALMDMYASCGCLKDAREIFDL 353

Query: 377 ISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDG 436
           +S + V  WT++I   G HG   +A+DLF KM   G++P +I F+ VL ACSHAGL+ DG
Sbjct: 354 MSARDVISWTSIISAYGKHGHGREAVDLFEKMLGQGLEPDSIAFVAVLAACSHAGLLADG 413

Query: 437 RRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGAR 496
           + YF+ M + Y I P  EHY C+VD+L R G + EA   I +M + PN  +W +LL   R
Sbjct: 414 KHYFDSMTSRYHIIPKAEHYTCMVDLLGRAGCINEAYDFITTMLIEPNERVWGALLQACR 473

Query: 497 NHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGS 556
            H N DIG  AA+NL  + P+  G YV+LSN+YA AG+W  V+ VR +M  +G +K PG+
Sbjct: 474 IHSNMDIGLVAADNLFSLVPEQTGYYVLLSNMYARAGRWADVTSVRSVMVNKGIKKFPGT 533

Query: 557 SSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEA 616
           S +E    +H F +GD+ HPQ++ I+ KL E+  K++  G+ P+    L  +E++ +KE 
Sbjct: 534 SIVELGDQVHTFHIGDRCHPQSEMIYHKLDELLGKIRGMGYNPEVEATLHDVEEE-DKED 592

Query: 617 ELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFH 676
            L  HSE+LAIAF L+N    + IR+  NLR C+DCH   KL+S I  REI+++D +R H
Sbjct: 593 HLSVHSEKLAIAFLLLNTSPGTIIRVTMNLRTCSDCHLAAKLISIITCREIVLKDTNRIH 652

Query: 677 HFKNGSCSCKDFW 689
           H   G CSC D+W
Sbjct: 653 HIVQGVCSCGDYW 665



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 140/310 (45%), Gaps = 30/310 (9%)

Query: 69  NNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCV 128
           +++ + R +FD  +Q   L+ +N ++  Y  N+   +A+ LF  +    + PD+ TL  V
Sbjct: 241 DDIRFVRRVFDN-MQFKELISWNAMLAVYANNEFHVKAVELFMLMEKDEVEPDSITLATV 299

Query: 129 IKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDL 188
           +     L A   GK+IH ++ +     +  + ++L+ MYA  G +   R +FD M  +D+
Sbjct: 300 LPPCGELSAFSVGKRIHEIIKRKNMCPNLLLENALMDMYASCGCLKDAREIFDLMSARDV 359

Query: 189 VSWNCLIDGYVKKGEVEVAMKLFDEM----PDRDLFSWTCLVDGFSKCGKVEIAREIFYR 244
           +SW  +I  Y K G    A+ LF++M     + D  ++  ++   S  G +   +  F  
Sbjct: 360 ISWTSIISAYGKHGHGREAVDLFEKMLGQGLEPDSIAFVAVLAACSHAGLLADGKHYFDS 419

Query: 245 MPNRNLV-----SWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFME 299
           M +R  +      +  M++   +AG ++ A +    M    LI  N  +      G  ++
Sbjct: 420 MTSRYHIIPKAEHYTCMVDLLGRAGCINEAYDFITTM----LIEPNERVW-----GALLQ 470

Query: 300 ALELLETMLIGDVLPNDATLVSALSAVAGLAVL------NKGRWMHSYIVKNGFVVDGV- 352
           A  +   M IG V  ++  L S +    G  VL        GRW     V++  V  G+ 
Sbjct: 471 ACRIHSNMDIGLVAADN--LFSLVPEQTGYYVLLSNMYARAGRWADVTSVRSVMVNKGIK 528

Query: 353 --LGTLLIQM 360
              GT ++++
Sbjct: 529 KFPGTSIVEL 538


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/568 (36%), Positives = 323/568 (56%), Gaps = 41/568 (7%)

Query: 161 SSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL- 219
           ++L++ Y + G ++  + +FD M  ++ +SW  +I GY + G  E A+ L  E+    + 
Sbjct: 357 NALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGML 416

Query: 220 --------------------------------------FSWTCLVDGFSKCGKVEIAREI 241
                                                 F+   L+  + KC  +E AR++
Sbjct: 417 PSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQV 476

Query: 242 FYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEAL 301
           F RM  +++VSWN+ +   ++   +D A   FD+M  RD ++W ++I+ Y    +  EA+
Sbjct: 477 FSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAM 536

Query: 302 ELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMY 361
              +TM     LPN   L   L     L     G+ +H+  +K G   + ++   LI MY
Sbjct: 537 GAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMY 596

Query: 362 SKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFI 421
            KCG  +S   +F  + ++ +  W  +I G   HG+  +A+ ++  M   G+ P  +TF+
Sbjct: 597 FKCGCADSR-RIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFV 655

Query: 422 GVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPM 481
           G+LNACSHAGLV++G ++F  M  DYG+ P  EHY C+VD+L RTG ++ A+  I  MP+
Sbjct: 656 GLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPI 715

Query: 482 RPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEV 541
            P+ VIW +LL   + H N +IG+ AA  L ++ P   G YV+LSNIY++ G W +V+EV
Sbjct: 716 EPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEV 775

Query: 542 REMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDT 601
           R++MK++G  K+PG S  + +  +H FV GDK H Q +EI + L E+   LKA G+VPDT
Sbjct: 776 RKIMKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVATLEELYTLLKATGYVPDT 835

Query: 602 TQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSG 661
             VL  I D+++KE+ L  HSE+LA+A+ L+      PI+I+KNLR+C DCH+  K +S 
Sbjct: 836 EFVLHDI-DEEQKESSLLYHSEKLAVAYCLLATPKGMPIQILKNLRICGDCHTFIKFVSH 894

Query: 662 IYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           +  R+I +RD +RFHHF+NGSCSC+DFW
Sbjct: 895 VTKRQIDIRDGNRFHHFRNGSCSCEDFW 922



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 106/375 (28%), Positives = 198/375 (52%), Gaps = 6/375 (1%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           AR++F+++ +  +LV + ++I  Y   +   +A  +FC +    LLPD       +    
Sbjct: 177 ARNLFEKMPER-NLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVK 235

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEI-DLGRRVFDAMDDKDLVSWN 192
            LG +   + +  L  K GF  D  + ++++++Y++   + D   + F++M +++  +W+
Sbjct: 236 GLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWS 295

Query: 193 CLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS 252
            +I      G ++ A+ +++  P + +   T L+ G ++CG+++ AR +F ++P   +VS
Sbjct: 296 TMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGLAQCGRIDDARILFEQIPEPIVVS 355

Query: 253 WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDV 312
           WNA+I GYM+ G V+ A ELFD M  R+ I+W  MIAGY  NGR  EAL LL+ +    +
Sbjct: 356 WNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGM 415

Query: 313 LPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALT 372
           LP+ ++L S   A + +  L  G  +HS  VK G   +      LI MY KC ++E A  
Sbjct: 416 LPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQ 475

Query: 373 VFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGL 432
           VF  +  K +  W + +  L  + +  +A + F+ M    +    +++  +++A +HA  
Sbjct: 476 VFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNM----LSRDDVSWTTIISAYAHAEQ 531

Query: 433 VNDGRRYFNMMINDY 447
            N+    F  M  ++
Sbjct: 532 SNEAMGAFKTMFCEH 546



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 103/375 (27%), Positives = 187/375 (49%), Gaps = 15/375 (4%)

Query: 129 IKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDL 188
           I+   RLG + E ++    VF      D    +S++S Y   G  D  R ++DA+   ++
Sbjct: 41  IRDLGRLGRVGEARE----VFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNM 96

Query: 189 VSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR 248
            +   L+ GY + G V  A ++FD M +R+  +W  ++  + + G + +AR +F  MP+R
Sbjct: 97  RTGAILLSGYGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSR 156

Query: 249 NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETML 308
           ++ SWN+M+ GY  +  +  A  LF+ M  R+L++W  MI+GY       +A ++   M 
Sbjct: 157 DVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMH 216

Query: 309 IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSI- 367
              +LP+ +   SALSAV GL  L+    +    +K GF  D V+GT ++ +YS+  S+ 
Sbjct: 217 REGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVL 276

Query: 368 ESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNAC 427
           ++A+  F ++ ++    W+ MI  L   G    A+ ++    R  +K  A     ++   
Sbjct: 277 DTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYE---RDPVKSIACR-TALITGL 332

Query: 428 SHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVI 487
           +  G ++D R  F  +      EP +  +  L+    + G + EAK   + MP R N + 
Sbjct: 333 AQCGRIDDARILFEQI-----PEPIVVSWNALITGYMQNGMVNEAKELFDKMPFR-NTIS 386

Query: 488 WMSLLSGARNHGNKD 502
           W  +++G   +G  +
Sbjct: 387 WAGMIAGYAQNGRSE 401



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 140/296 (47%), Gaps = 43/296 (14%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQH---------PSLVL 89
           Q+H+L+VK    ++S   + L+++Y      N+ YAR +F R++            +LV 
Sbjct: 440 QVHSLAVKVGCQFNSFACNALITMY--GKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQ 497

Query: 90  YNLL---------------------IKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCV 128
            +LL                     I  Y   ++S+EA+  F  +     LP++  L  +
Sbjct: 498 NDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTIL 557

Query: 129 IKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDL 188
           +     LGA K G+QIH +  KLG   +  V ++L+SMY K G  D  RR+FD M+++D+
Sbjct: 558 LGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCGCAD-SRRIFDLMEERDI 616

Query: 189 VSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLF----SWTCLVDGFSKCGKVEIAREIFYR 244
            +WN +I GY + G    A+K++  M    +     ++  L++  S  G V+   + F  
Sbjct: 617 FTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKS 676

Query: 245 MPNRNLVS-----WNAMINGYMKAGDVDSACELFDDMEIR-DLITWNSMIAGYELN 294
           M     ++     +  M++   + GDV  A +   DM I  D + W++++   +++
Sbjct: 677 MSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIH 732



 Score = 42.0 bits (97), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 47/231 (20%), Positives = 94/231 (40%), Gaps = 38/231 (16%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           QQ+H +++K  +     +++ L+S+Y      +   +R IFD +++   +  +N +I  Y
Sbjct: 571 QQIHTVAIKLGMDSELIVANALISMYFKCGCAD---SRRIFD-LMEERDIFTWNTIITGY 626

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
             +    EA+ ++  +    +LP+  T   ++   +  G + EG +     FK       
Sbjct: 627 AQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKF----FK------- 675

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP-D 216
                  SM   +G   L               + C++D   + G+V+ A +   +MP +
Sbjct: 676 -------SMSQDYGLTPLPEH------------YACMVDLLGRTGDVQGAEQFIYDMPIE 716

Query: 217 RDLFSWTCLVDGFSKCGKVEI---AREIFYRMPNRNLVSWNAMINGYMKAG 264
            D   W+ L+         EI   A E  +R+   N  ++  + N Y   G
Sbjct: 717 PDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLG 767


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 205/525 (39%), Positives = 318/525 (60%), Gaps = 9/525 (1%)

Query: 173 IDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDG 228
           +D  R++F+ M +KDLVSWN +I G  + G     + +  EM   +L    F+ + ++  
Sbjct: 250 VDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPL 309

Query: 229 FSKCGKVEIAREI----FYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITW 284
            ++   +   +EI      +  +  +   +++I+ Y K   V  +  +F  +  RD I+W
Sbjct: 310 IAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISW 369

Query: 285 NSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVK 344
           NS+IAG   NG F E L+    ML+  + P   +  S + A A L  L+ G+ +H YI +
Sbjct: 370 NSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITR 429

Query: 345 NGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDL 404
           NGF  +  + + L+ MY+KCG+I +A  +F  +  + +  WTAMI+G  +HG A  A++L
Sbjct: 430 NGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIEL 489

Query: 405 FNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILC 464
           F +M   G++P  + F+ VL ACSHAGLV++  +YFN M  D+GI P +EHY  + D+L 
Sbjct: 490 FEQMKTEGIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYAAVSDLLG 549

Query: 465 RTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVV 524
           R G LEEA   I  MP+ P   +W +LLS  R H N D+ E  AN +++V P   G Y++
Sbjct: 550 RAGRLEEAYDFICGMPIGPTGSVWATLLSACRVHKNVDMAEKVANRILEVDPKNTGAYIL 609

Query: 525 LSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSK 584
           L+NIY+AA +W + ++ R  +++ G RK P  S IE R  ++ F+ GD+SHP  ++I   
Sbjct: 610 LANIYSAARRWKEAAKWRASLRRTGIRKTPACSWIEVRNKVYAFMAGDESHPCYEKIREA 669

Query: 585 LSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVK 644
           +  +   ++  G+VPDT++V   +E++++K   + +HSERLAI FG+IN  + + IR+ K
Sbjct: 670 MEVLMELMEKEGYVPDTSEVHHDVEEEQKKYL-VCSHSERLAIVFGIINTPAGTTIRVTK 728

Query: 645 NLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           NLRVC DCH+ TK +S I  REI+VRDNSRFHHFKNG+CSC D+W
Sbjct: 729 NLRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDYW 773



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 121/497 (24%), Positives = 225/497 (45%), Gaps = 66/497 (13%)

Query: 33  THKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNL 92
           +  + QQLHA  +K      S + +  L L +  HIN LH +  +F+  L  P  + +  
Sbjct: 23  SRSQAQQLHAQVLK---FQASSLCNLSLLLSIYSHINLLHDSLRLFN-TLHFPPALAWKS 78

Query: 93  LIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLG 152
           +I+CY  +   H++L  F  +L   L PD+   P V+K  A L  +  G+ +HG + ++G
Sbjct: 79  VIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACAMLMDLNLGESLHGYIIRVG 138

Query: 153 FGFDKFVLSSLVSMYAKF------GEIDLG-RRVFDAMDDK------------------- 186
             FD +  ++L++MY+K       G   LG  +V D M ++                   
Sbjct: 139 LDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQVLDEMTERTRSVRTASVLVGNQGRKVS 198

Query: 187 DLVSWNCLIDGYVKKGE---VEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFY 243
           D+ ++N  +    ++ E   +E+  K   E  + +  +    +   S    V+  R+IF 
Sbjct: 199 DIEAFNYDVSCRSREFEAQVLEIDYKPRSEYREMEACNLGQQIKDISHSMSVDSVRKIFE 258

Query: 244 RMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALEL 303
            MP ++LVSW                               N++IAG   NG + E L +
Sbjct: 259 MMPEKDLVSW-------------------------------NTIIAGNARNGLYGETLTM 287

Query: 304 LETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSK 363
           +  M   ++ P+  TL S L  +A    ++KG+ +H   ++ G   +  + + LI MY+K
Sbjct: 288 VREMGGANLKPDSFTLSSVLPLIAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAK 347

Query: 364 CGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGV 423
           C  +  +  VF  ++++    W ++I G   +G+  + L  F +M    +KP + +F  +
Sbjct: 348 CTRVVDSYRVFTLLTERDGISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSI 407

Query: 424 LNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRP 483
           + AC+H   ++ G++  +  I   G +  I     LVD+  + G +  A+   + M +R 
Sbjct: 408 MPACAHLTTLHLGKQ-LHGYITRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLR- 465

Query: 484 NFVIWMSLLSGARNHGN 500
           + V W +++ G   HG+
Sbjct: 466 DMVSWTAMIMGCALHGH 482



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 94/341 (27%), Positives = 151/341 (44%), Gaps = 49/341 (14%)

Query: 67  HINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLP 126
           H  ++   R IF+ ++    LV +N +I     N    E LT+  ++    L PD+FTL 
Sbjct: 246 HSMSVDSVRKIFE-MMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLS 304

Query: 127 CVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK 186
            V+   A    I +GK+IHG   + G   + +V SSL+ MYAK   +    RVF  + ++
Sbjct: 305 SVLPLIAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTER 364

Query: 187 DLVSWNCLIDGYVKKGEVEVAMKLFDEM------P------------------------- 215
           D +SWN +I G V+ G  +  +K F +M      P                         
Sbjct: 365 DGISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLH 424

Query: 216 --------DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVD 267
                   D ++F  + LVD ++KCG +  AR+IF RM  R++VSW AMI G    G   
Sbjct: 425 GYITRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHAL 484

Query: 268 SACELFDDMEIRDL----ITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSAL 323
            A ELF+ M+   +    + + +++      G   EA +   +M +   +       +A+
Sbjct: 485 DAIELFEQMKTEGIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYAAV 544

Query: 324 SAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKC 364
           S + G A    GR   +Y    G  + G  G++   + S C
Sbjct: 545 SDLLGRA----GRLEEAYDFICGMPI-GPTGSVWATLLSAC 580



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 127/290 (43%), Gaps = 35/290 (12%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +++H  S++  L     ++S L+ +Y       +  +  +F  +L     + +N +I   
Sbjct: 320 KEIHGCSIRQGLDAEVYVASSLIDMYAK--CTRVVDSYRVFT-LLTERDGISWNSIIAGC 376

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
           V N    E L  F  +L   + P +++   ++   A L  +  GKQ+HG + + GF  + 
Sbjct: 377 VQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENI 436

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
           F+ SSLV MYAK G I   R++FD M  +D+VSW  +I G    G    A++LF++M   
Sbjct: 437 FIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIELFEQMKTE 496

Query: 218 DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDME 277
            +                             N V++ A++     AG VD A + F+ M 
Sbjct: 497 GI---------------------------EPNYVAFMAVLTACSHAGLVDEAWKYFNSMT 529

Query: 278 IRDLIT-----WNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSA 322
           +   I      + ++       GR  EA + +  M IG      ATL+SA
Sbjct: 530 LDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMPIGPTGSVWATLLSA 579


>gi|224057824|ref|XP_002299342.1| predicted protein [Populus trichocarpa]
 gi|222846600|gb|EEE84147.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 225/632 (35%), Positives = 355/632 (56%), Gaps = 19/632 (3%)

Query: 70  NLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVI 129
           +L  AR +FD  ++  +LV +N +I  Y  N    +   +F ++L+    P+  T    +
Sbjct: 60  SLADARKVFDE-MRERNLVSWNTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFL 118

Query: 130 KGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLV 189
           +       ++ GKQIH    + G G +  V +++ +MY K G ++    VF+ M +K+ V
Sbjct: 119 RSLLNPSGLEIGKQIHSHAIRSGLGSNASVNTAISNMYVKCGWLEGAELVFEKMSEKNAV 178

Query: 190 SWNCLIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREIFYRM 245
           +W  ++ GY +      A+ LF +M +     D + ++ ++   +   ++   R+I   +
Sbjct: 179 AWTGIMVGYTQAERQMDALALFAKMVNEGVELDEYVFSIVLKACAGLEELNFGRQIHGHI 238

Query: 246 PNRNLVS----WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEAL 301
               L S       +++ Y+K  +++SA + F+ +   + ++W+++I GY   G F EAL
Sbjct: 239 VKLGLESEVSVGTPLVDFYVKCSNLESATKAFEWISEPNDVSWSALITGYCQMGEFEEAL 298

Query: 302 ELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMY 361
           +  E++    V  N  T  S   A + LA  N G   H+  +K+  V      + +I MY
Sbjct: 299 KTFESLRTRSVDINSFTYTSIFQACSALADFNSGAQAHADAIKSSLVAYQHGESAMITMY 358

Query: 362 SKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFI 421
           S+CG ++ A  VF +I       WTA+I G    G A +AL LF +M   G++P A+TFI
Sbjct: 359 SRCGRLDYATRVFESIDDPDAVAWTAIIAGYAYQGNAPEALKLFRRMQDCGVRPNAVTFI 418

Query: 422 GVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPM 481
            VL ACSH+GLV +GR+Y   M ++YG+  TI+HY C+VDI  R G+L+EA   I SMP 
Sbjct: 419 AVLTACSHSGLVIEGRQYLESMSSNYGVATTIDHYDCMVDIYSRAGFLQEALELIRSMPF 478

Query: 482 RPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEV 541
            P+ + W  LL G   + N +IGE AA NL ++ P+    Y+++ N+YA+ G+W + + V
Sbjct: 479 SPDAMSWKCLLGGCWTYRNLEIGELAAENLFQLDPEDTAGYILMFNLYASFGKWKEAANV 538

Query: 542 REMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDT 601
           R+MM +R  RK+   S I  +G +H F+VGDK HPQT+EI+SKL  + + +     + + 
Sbjct: 539 RKMMAERNLRKELSCSWITVKGKVHRFIVGDKHHPQTEEIYSKLEALNDSV-----IKEE 593

Query: 602 TQVLLCIEDQK----EKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTK 657
           T  LL  ED      E++ +L  HSERLA+AFGLI+  S +P+ + KNLR C DCH   K
Sbjct: 594 TG-LLTEEDVSNSLPERKEQLLVHSERLALAFGLISTPSSAPVVVFKNLRACKDCHDFGK 652

Query: 658 LLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            +S I  REI+VRD+ RFHHFK G CSC D+W
Sbjct: 653 QVSLITGREIVVRDSFRFHHFKLGECSCNDYW 684



 Score =  146 bits (368), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 104/387 (26%), Positives = 180/387 (46%), Gaps = 20/387 (5%)

Query: 127 CVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK 186
           C+ +   ++ ++ +G+  H  + +      +F+ +S++ MY K G +   R+VFD M ++
Sbjct: 15  CLFEACGKIKSLFDGRLFHEQMQRTVKNPPEFLENSVLKMYCKCGSLADARKVFDEMRER 74

Query: 187 DLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKC----GKVEIAREIF 242
           +LVSWN +I  Y + G  +    +F  M + +         GF +       +EI ++I 
Sbjct: 75  NLVSWNTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFLRSLLNPSGLEIGKQIH 134

Query: 243 YRMPNRNLVSWNAMING-----YMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRF 297
                  L S NA +N      Y+K G ++ A  +F+ M  ++ + W  ++ GY    R 
Sbjct: 135 SHAIRSGLGS-NASVNTAISNMYVKCGWLEGAELVFEKMSEKNAVAWTGIMVGYTQAERQ 193

Query: 298 MEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLL 357
           M+AL L   M+   V  ++      L A AGL  LN GR +H +IVK G   +  +GT L
Sbjct: 194 MDALALFAKMVNEGVELDEYVFSIVLKACAGLEELNFGRQIHGHIVKLGLESEVSVGTPL 253

Query: 358 IQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA 417
           +  Y KC ++ESA   F  IS+     W+A+I G    G   +AL  F  +    +   +
Sbjct: 254 VDFYVKCSNLESATKAFEWISEPNDVSWSALITGYCQMGEFEEALKTFESLRTRSVDINS 313

Query: 418 ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHY----GCLVDILCRTGYLEEAK 473
            T+  +  ACS     N G +      +   I+ ++  Y      ++ +  R G L+ A 
Sbjct: 314 FTYTSIFQACSALADFNSGAQ-----AHADAIKSSLVAYQHGESAMITMYSRCGRLDYAT 368

Query: 474 STIESMPMRPNFVIWMSLLSGARNHGN 500
              ES+   P+ V W ++++G    GN
Sbjct: 369 RVFESID-DPDAVAWTAIIAGYAYQGN 394



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 83/281 (29%), Positives = 139/281 (49%), Gaps = 12/281 (4%)

Query: 221 SWTCLVDGFSKCGKVE--IAREIFYRMPNRNLVS-----WNAMINGYMKAGDVDSACELF 273
           S+ CL   F  CGK++      +F+    R + +      N+++  Y K G +  A ++F
Sbjct: 12  SYKCL---FEACGKIKSLFDGRLFHEQMQRTVKNPPEFLENSVLKMYCKCGSLADARKVF 68

Query: 274 DDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLN 333
           D+M  R+L++WN++I+ Y  NG F +   +   ML  +  PN +T +  L ++   + L 
Sbjct: 69  DEMRERNLVSWNTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFLRSLLNPSGLE 128

Query: 334 KGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLG 393
            G+ +HS+ +++G   +  + T +  MY KCG +E A  VF  +S+K    WT ++VG  
Sbjct: 129 IGKQIHSHAIRSGLGSNASVNTAISNMYVKCGWLEGAELVFEKMSEKNAVAWTGIMVGYT 188

Query: 394 MHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTI 453
                  AL LF KM   G++     F  VL AC+    +N GR+    ++   G+E  +
Sbjct: 189 QAERQMDALALFAKMVNEGVELDEYVFSIVLKACAGLEELNFGRQIHGHIVK-LGLESEV 247

Query: 454 EHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG 494
                LVD   +   LE A    E +   PN V W +L++G
Sbjct: 248 SVGTPLVDFYVKCSNLESATKAFEWIS-EPNDVSWSALITG 287


>gi|108711755|gb|ABF99550.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215697380|dbj|BAG91374.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 646

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 217/594 (36%), Positives = 337/594 (56%), Gaps = 44/594 (7%)

Query: 137 AIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLID 196
           A++  +Q+H      G   D+F  + L+  YA  G++   R +F+ +  ++++SWN L  
Sbjct: 56  ALRPLRQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIPRRNVMSWNILFG 115

Query: 197 GYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMP---------- 246
           GY+K G++  A KLFDEMP+R++ +W  +V G +  G  E +   F  M           
Sbjct: 116 GYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEFG 175

Query: 247 -----------------------------NRNLVSWNAMINGYMKAGDVDSACELFDDME 277
                                        +R++   +++ + YM+ G +     +   + 
Sbjct: 176 LGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLP 235

Query: 278 IRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRW 337
              +++ N++IAG   NG    ALE    M    V  +  T VSA+S+ + LA L +G+ 
Sbjct: 236 SLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQ 295

Query: 338 MHSYIVKNGFVVDGVLG--TLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMH 395
           +H  ++K G  VD V+   T L+ MYS+CG +  +  VF           +AMI   G H
Sbjct: 296 IHGQVMKAG--VDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFH 353

Query: 396 GMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEH 455
           G   +A++LF +M   G +P+ +TF+ +L ACSH+GL  +G   F +M   YG++P+++H
Sbjct: 354 GHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKTYGMQPSVKH 413

Query: 456 YGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVA 515
           Y C+VD+L R+G L+EA++ I SMP+ P+ VIW +LLS  +   N D+ E  A  +I++ 
Sbjct: 414 YTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAERIAKRVIELD 473

Query: 516 PDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSH 575
           P     YV+LSNI A + +W  VSEVR+ M+    RK+PG S +E +G +H+F  GD+SH
Sbjct: 474 PHDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHIHQFCTGDESH 533

Query: 576 PQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVK 635
           P+  EI   L EM  K++  G+ PD + VL  +ED+ EKE  L +HSE+LAIAF  +++ 
Sbjct: 534 PRQKEIDECLEEMMAKIRQCGYSPDMSMVLHDMEDE-EKEVSLSHHSEKLAIAFAFLSLP 592

Query: 636 SRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
              PIR++KNLRVC+DCH   KL+S +  REI+VRD SRFHHFK+G CSC+D+W
Sbjct: 593 EGVPIRVMKNLRVCDDCHLAIKLMSQVTGREIVVRDVSRFHHFKDGRCSCRDYW 646



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 80/364 (21%), Positives = 152/364 (41%), Gaps = 42/364 (11%)

Query: 11  PIHALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINN 70
           P   +     +RL  ++ +     +  +QLHA +  +        ++ L+  Y D  + +
Sbjct: 34  PFRGVLWSDAARLFSHLFRACRALRPLRQLHAFAATSGAATDRFTANHLMLAYAD--LGD 91

Query: 71  LHYARSIFDRILQHPSLVLYNLLIKCYVFN--------------QRS------------- 103
           L  AR +F+RI +  +++ +N+L   Y+ N              +R+             
Sbjct: 92  LTAARELFERIPRR-NVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTN 150

Query: 104 ----HEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFV 159
                E+L  F D+    + PD F L  V +  A L  +  G+Q+H  V + G   D  V
Sbjct: 151 LGFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCV 210

Query: 160 LSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL 219
            SSL  MY + G +  G  V   +    +VS N +I G  + G+ E A++ F  M    +
Sbjct: 211 GSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGV 270

Query: 220 FS-WTCLVDGFSKCGKV-------EIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACE 271
            +     V   S C  +       +I  ++     ++ +     +++ Y + G +  +  
Sbjct: 271 AADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSER 330

Query: 272 LFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAV 331
           +F      D    ++MI+ Y  +G   +A+EL + M+ G   P+D T ++ L A +   +
Sbjct: 331 VFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGL 390

Query: 332 LNKG 335
             +G
Sbjct: 391 KEEG 394



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 128/299 (42%), Gaps = 15/299 (5%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +Q+HA  V++ L     + S L  +Y+      L    ++  R+L   S+V  N +I   
Sbjct: 193 RQVHAYVVRSGLDRDMCVGSSLAHMYM--RCGCLQEGEAVL-RMLPSLSIVSCNTIIAGR 249

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
             N  S  AL  FC +    +  D  T    I   + L A+ +G+QIHG V K G     
Sbjct: 250 TQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVV 309

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM--- 214
            V++ LV MY++ G +    RVF      D    + +I  Y   G  + A++LF +M   
Sbjct: 310 PVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQMMNG 369

Query: 215 -PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR-----NLVSWNAMINGYMKAGDVDS 268
             +    ++  L+   S  G  E   + F  M        ++  +  +++   ++G +D 
Sbjct: 370 GAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKTYGMQPSVKHYTCVVDLLGRSGCLDE 429

Query: 269 ACELFDDMEIR-DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326
           A  L   M +  D + W ++++  +    F  A  + + ++  D  P+D+     LS +
Sbjct: 430 AEALILSMPLTPDGVIWKTLLSACKTQKNFDMAERIAKRVIELD--PHDSASYVLLSNI 486


>gi|345505234|gb|AEN99841.1| chlororespiratory reduction 4, partial [Raphanus sativus]
          Length = 577

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 225/533 (42%), Positives = 313/533 (58%), Gaps = 37/533 (6%)

Query: 72  HYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKG 131
           +++RS+    ++ P   L+N +IK +       +AL LFC +L+  +L D F++  V+K 
Sbjct: 45  YHSRSVSPGEIKDP--FLWNAVIKSHSHGADPRKALLLFCLMLENGVLVDKFSMSLVLKA 102

Query: 132 AARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSW 191
            +RLG  KEG Q+HG + K     D F+ + L+ +Y K G +   R+VFD M  +D VS+
Sbjct: 103 CSRLGFAKEGMQVHGFLIKSRTWSDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSY 162

Query: 192 NCLIDGYVKKGEVE----------------------------------VAMKLFDEMPDR 217
           N +IDGYVK G VE                                  VA KLFDEMP++
Sbjct: 163 NSMIDGYVKCGLVESAGELFDLMPREKRNLITWNSMIGGYAQRADGVNVASKLFDEMPEK 222

Query: 218 DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDME 277
           DL SW  ++ G+ K G++E A+ +F  MP R++V+W  MI+GY K G V  A  LFD M 
Sbjct: 223 DLISWNSMIGGYVKHGRIEDAKGLFDVMPRRDVVTWAIMIDGYGKLGLVHQAKTLFDQMP 282

Query: 278 IRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL-PNDATLVSALSAVAGLAVLNKGR 336
            RD++ +NSM++G+  N   +EALE+   M     L P++ TLV  LSA+A L  L K  
Sbjct: 283 HRDVVAYNSMMSGFVQNRYHIEALEVFNHMEKESHLSPDETTLVIVLSAIAQLGRLTKAI 342

Query: 337 WMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHG 396
            MH YIV+  F++ G LG  LI MYSKCGSI+ A+ VF  I  K + HW AMI GL +HG
Sbjct: 343 DMHLYIVEKRFLLSGKLGVALIDMYSKCGSIQHAMRVFEGIESKSIDHWNAMIGGLAVHG 402

Query: 397 MATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHY 456
           +   A D+  ++ R  +KP  ITF+GVLNACSH+GLV +G   F +M   + IEP ++HY
Sbjct: 403 LGESAFDMLLQIERRSIKPDHITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHY 462

Query: 457 GCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAP 516
           GC+VDIL R+G +E AK+ IE MP+ PN VIW + L+   +H   + GE  A +LI  A 
Sbjct: 463 GCMVDILARSGSIELAKNLIEEMPIEPNDVIWRTFLNACSHHKEFETGELVAKHLILQAG 522

Query: 517 DTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFV 569
                YV+LSN+YA+ G W  V  VR MMK++   K PG S IE  G +HEF+
Sbjct: 523 YNPSSYVLLSNMYASNGMWKDVRRVRTMMKEKKIEKLPGCSWIELDGRVHEFL 575


>gi|356529748|ref|XP_003533450.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 604

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 221/567 (38%), Positives = 343/567 (60%), Gaps = 12/567 (2%)

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYA--KFGEIDLGRRVFDAMDDKDLVSW 191
           R  +++E KQ+H  + KLG  +D F  S+LV+  A  ++G ++    +F  +++     +
Sbjct: 39  RCKSMEEFKQVHAHILKLGLFYDSFCGSNLVATCALSRWGSMEYACSIFRQIEEPGSFEY 98

Query: 192 NCLIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGK----VEIAREIFY 243
           N +I G V    +E A+ L+ EM +R    D F++  ++   S  G     V+I   +F 
Sbjct: 99  NTMIRGNVNSMNLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLGALKEGVQIHAHVFK 158

Query: 244 RMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALEL 303
                ++   N +IN Y K G ++ A  +F+ M+ + + +W+S+I  +     + E L L
Sbjct: 159 AGLEGDVFVQNGLINMYGKCGAIEHASVVFEQMDEKSVASWSSIIGAHASVEMWHECLML 218

Query: 304 LETML-IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYS 362
           L  M   G     ++ LVSALSA   L   N GR +H  +++N   ++  + T LI MY 
Sbjct: 219 LGDMSGEGRHRAEESILVSALSACTHLGSPNFGRCIHGILLRNISELNVAVKTSLIDMYV 278

Query: 363 KCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIG 422
           K GS+E  L VF+ +++K    +T +I GL +HG   +AL +F+ M   G+ P  + ++G
Sbjct: 279 KSGSLEKGLCVFQNMAQKNRYSYTVIITGLAIHGRGREALSVFSDMLEEGLAPDDVVYVG 338

Query: 423 VLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMR 482
           VL+ACSHAGLVN+G + FN +  ++ I+PTI+HYGC+VD++ R G L+ A   I+SMP++
Sbjct: 339 VLSACSHAGLVNEGLQCFNRLQFEHKIKPTIQHYGCMVDLMGRAGMLKGAYDLIKSMPIK 398

Query: 483 PNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVR 542
           PN V+W SLLS  + H N +IGE AA N+ K+     G Y+VL+N+YA A +W  V+ +R
Sbjct: 399 PNDVVWRSLLSACKVHHNLEIGEIAAENIFKLNQHNPGDYLVLANMYARAKKWADVARIR 458

Query: 543 EMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTT 602
             M ++   + PG S +E    +++FV  DKS PQ + I+  + +M  +LK  G+ PD +
Sbjct: 459 TEMAEKHLVQTPGFSLVEANRNVYKFVSQDKSQPQCETIYDMIQQMEWQLKFEGYTPDMS 518

Query: 603 QVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGI 662
           QVLL + D+ EK   L++HS++LAIAF LI     S IRI +N+R+CNDCH+ TK +S I
Sbjct: 519 QVLLDV-DEDEKRQRLKHHSQKLAIAFALIQTSEGSRIRISRNIRMCNDCHTYTKFISVI 577

Query: 663 YNREIIVRDNSRFHHFKNGSCSCKDFW 689
           Y REI VRD +RFHHFK+G+CSCKD+W
Sbjct: 578 YEREITVRDRNRFHHFKDGTCSCKDYW 604



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 118/411 (28%), Positives = 193/411 (46%), Gaps = 43/411 (10%)

Query: 26  NILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHP 85
           ++LK   + +E +Q+HA  +K  L Y S   S L++        ++ YA SIF R ++ P
Sbjct: 35  SLLKRCKSMEEFKQVHAHILKLGLFYDSFCGSNLVATCALSRWGSMEYACSIF-RQIEEP 93

Query: 86  SLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIH 145
               YN +I+  V +    EAL L+ ++L+R + PDNFT P V+K  + LGA+KEG QIH
Sbjct: 94  GSFEYNTMIRGNVNSMNLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLGALKEGVQIH 153

Query: 146 GLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVE 205
             VFK G   D FV + L++MY K G I+    VF+ MD+K + SW+ +I  +       
Sbjct: 154 AHVFKAGLEGDVFVQNGLINMYGKCGAIEHASVVFEQMDEKSVASWSSIIGAHASVEMWH 213

Query: 206 VAMKLFDEMP--DRDLFSWTCLVDGFSKC---GKVEIAREI----FYRMPNRNLVSWNAM 256
             + L  +M    R     + LV   S C   G     R I       +   N+    ++
Sbjct: 214 ECLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNFGRCIHGILLRNISELNVAVKTSL 273

Query: 257 INGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPND 316
           I+ Y+K+G ++    +F +M  ++  ++  +I G  ++GR  EAL +   ML   + P+D
Sbjct: 274 IDMYVKSGSLEKGLCVFQNMAQKNRYSYTVIITGLAIHGRGREALSVFSDMLEEGLAPDD 333

Query: 317 ATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRA 376
              V  LSA +   ++N+G                      +Q +++          F  
Sbjct: 334 VVYVGVLSACSHAGLVNEG----------------------LQCFNR--------LQFEH 363

Query: 377 ISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNAC 427
             K  + H+  M+  +G  GM   A DL      M +KP  + +  +L+AC
Sbjct: 364 KIKPTIQHYGCMVDLMGRAGMLKGAYDLIKS---MPIKPNDVVWRSLLSAC 411


>gi|297739965|emb|CBI30147.3| unnamed protein product [Vitis vinifera]
          Length = 538

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 220/510 (43%), Positives = 308/510 (60%), Gaps = 17/510 (3%)

Query: 191 WNCLIDGYVKKGEVEVAMKLFDEMPDRDL-----FSWTCLVDGFSKCGKVEIAREIFYRM 245
           WN +I GY +      A+ L+  M  + +     F++  L++  ++   +E   E+   +
Sbjct: 2   WNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHI 61

Query: 246 PNR----NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEAL 301
                  +L   NA+I+ Y   G+++ A  LFD+  +RDL+++N+MI GY    +   AL
Sbjct: 62  IKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESAL 121

Query: 302 ELLETMLIGDVLPNDATLVSALSAVAGLAVLNKG-RWMHSYIVKNGFVVDGVLGTLLIQM 360
            L   M   D    + TLV+ LSA A L   + G R  H YI    F  + +L   ++ M
Sbjct: 122 CLFGEMQNSD----EVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDM 177

Query: 361 YSKCGSIESALTVFRAISKK-KVGH-WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI 418
           Y+KCGSI+SAL +FR + K  K G  + +MI GL  HG+   A+ +F ++   G+KP  +
Sbjct: 178 YAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEV 237

Query: 419 TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIES 478
           TF+GVL AC H+GL+ +G++ F  M N YGI+P +EHYGC+VD+L R G LEEA   ++ 
Sbjct: 238 TFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQK 297

Query: 479 MPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKV 538
           MP   N VIW +LLS  R HGN  IGE A   L+++       YV+LSNI A A QW++ 
Sbjct: 298 MPFEANSVIWRALLSACRTHGNVKIGEIAGQKLLEMEAQHGARYVLLSNILADANQWEEA 357

Query: 539 SEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHV 598
            +VR++M+  G RK PG S IE  G +H FV  DKSHPQ  EI   L +M  +LK+AG+V
Sbjct: 358 RQVRKVMEDHGIRKPPGWSYIELGGAIHRFVASDKSHPQGKEIELMLKDMAMRLKSAGYV 417

Query: 599 PDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKL 658
           P+T QV+  I D++EKE+ +  HSE+LA+AFGL+       IRIVKNLR+C DCH   KL
Sbjct: 418 PNTAQVMFDI-DEEEKESVVSYHSEKLALAFGLMYCSPTDTIRIVKNLRICADCHKAFKL 476

Query: 659 LSGIYNREIIVRDNSRFHHFKNGSCSCKDF 688
           +S IY REI VRD  RFHHF+NGSCSC DF
Sbjct: 477 VSEIYGREITVRDTMRFHHFRNGSCSCMDF 506



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 103/402 (25%), Positives = 193/402 (48%), Gaps = 49/402 (12%)

Query: 89  LYNLLIKCYVFNQRSHEALTLFCDLLDRFLLP-DNFTLPCVIKGAARLGAIKEGKQIHGL 147
           ++N +I+ Y  +    EA+ L+  ++ + + P +NFT P ++   ARL +++ G ++H  
Sbjct: 1   MWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSH 60

Query: 148 VFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVA 207
           + K GF  D FV ++L+ +Y+ FG ++L R +FD    +DLVS+N +I GY +  + E A
Sbjct: 61  IIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESA 120

Query: 208 MKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYR-----MPNRNLVSWNAMINGYMK 262
           + LF EM + D  +   ++   ++ G  ++ + ++++     + N+N +   A+++ Y K
Sbjct: 121 LCLFGEMQNSDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAK 180

Query: 263 AGDVDSACELFDDM--EIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLV 320
            G +DSA E+F  +   ++    +NSMIAG   +G    A+ +   ++   + P++ T V
Sbjct: 181 CGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFV 240

Query: 321 SALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKK 380
             L A             HS +++ G         L   M++  G             K 
Sbjct: 241 GVLCACG-----------HSGLIEEG-------KKLFESMFNAYG------------IKP 270

Query: 381 KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYF 440
           ++ H+  M+  LG +G   +A DL  K   M  +  ++ +  +L+AC   G V  G    
Sbjct: 271 QMEHYGCMVDLLGRYGCLEEAYDLVQK---MPFEANSVIWRALLSACRTHGNVKIGE--- 324

Query: 441 NMMINDYGIEPTIEH---YGCLVDILCRTGYLEEAKSTIESM 479
             +     +E   +H   Y  L +IL      EEA+   + M
Sbjct: 325 --IAGQKLLEMEAQHGARYVLLSNILADANQWEEARQVRKVM 364



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 111/241 (46%), Gaps = 22/241 (9%)

Query: 70  NLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVI 129
           NL+ AR++FD  L    LV YN +IK Y    +   AL LF ++ +     D  TL  V+
Sbjct: 85  NLNLARTLFDESLVR-DLVSYNTMIKGYAEVNQPESALCLFGEMQN----SDEVTLVAVL 139

Query: 130 KGAARLGAIKEGKQIHGLVFKLG-FGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD--K 186
              ARLGA   GK+++    + G F  +  + ++++ MYAK G ID    +F  +    K
Sbjct: 140 SACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMK 199

Query: 187 DLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKCGKVEIARE 240
               +N +I G  + G  E A+ +F E+      PD   F       G S  G +E  ++
Sbjct: 200 TGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHS--GLIEEGKK 257

Query: 241 IFYRMPNR-----NLVSWNAMINGYMKAGDVDSACELFDDMEIR-DLITWNSMIAGYELN 294
           +F  M N       +  +  M++   + G ++ A +L   M    + + W ++++    +
Sbjct: 258 LFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTH 317

Query: 295 G 295
           G
Sbjct: 318 G 318


>gi|125547017|gb|EAY92839.1| hypothetical protein OsI_14639 [Oryza sativa Indica Group]
          Length = 702

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 234/672 (34%), Positives = 372/672 (55%), Gaps = 23/672 (3%)

Query: 38  QQLHALSVKTNLIY-HSGIS-SRLLSLYVDPHINNLHYARSIFDRILQ-HPSLVLYNLLI 94
           ++ HA ++K  L++ H   + + LLS+Y    +  +  A+ +F         +V +N ++
Sbjct: 34  REAHAFALKNGLLHGHQRFAFNALLSMYA--RLGLVADAQRLFAGATPGRGDVVTWNTMV 91

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLG-F 153
              V +    EA+    D++   + PD  T    +   +RL  +  G+++H  V K    
Sbjct: 92  SVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDEL 151

Query: 154 GFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD--KDLVSWNCLIDGYVKKGEVEVAMKLF 211
             + FV S+LV MYA   ++   R+VFD + D  K L  WN +I GY + G  E A++LF
Sbjct: 152 AANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLF 211

Query: 212 DEMPDRDLF--SWTCLVDGFSKC-------GKVEIAREIFYRMPNRNLVSWNAMINGYMK 262
             M     F    T +      C       GK  +   +  R    N    NA+++ Y +
Sbjct: 212 ARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYAR 271

Query: 263 AGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALEL---LETMLIGDVLPNDATL 319
            G  D A  +F  +++ D+++WN++I G  + G   +A +L   ++ +  G V+PN  TL
Sbjct: 272 LGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITL 331

Query: 320 VSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK 379
           ++ L   A LA   +G+ +H Y V++    D  +G+ L+ MY+KCG +  +  VF  + +
Sbjct: 332 MTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPR 391

Query: 380 KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG-MKPTAITFIGVLNACSHAGLVNDGRR 438
           +    W  +I+  GMHG+  +A  LF++M   G  +P  +TF+  L ACSH+G+V+ G +
Sbjct: 392 RNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQ 451

Query: 439 YFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFV-IWMSLLSGARN 497
            F+ M  D+G+EPT +   C+VDIL R G L+EA + + SM      V  W ++L   R 
Sbjct: 452 LFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMEAGEQQVSAWSTMLGACRL 511

Query: 498 HGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSS 557
           H N  +GE A   L+++ P+    YV+L NIY+AAGQW + +EVR  M++RG  K+PG S
Sbjct: 512 HRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCS 571

Query: 558 SIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAE 617
            IE  G +H F+ G+ +HP ++E+H+ +  +  ++ A G+ PDT+ VL  ++D  +K A 
Sbjct: 572 WIEVDGAIHRFMAGESAHPASEEVHAHMEALWGEMVARGYTPDTSCVLHDMDD-GDKAAV 630

Query: 618 LENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHH 677
           L  HSE+LAIAFGL+     + IR+ KNLRVCNDCH   K LS +  REI++RD  RFHH
Sbjct: 631 LRCHSEKLAIAFGLLRAAPGATIRVAKNLRVCNDCHEAAKFLSKMVGREIVLRDVRRFHH 690

Query: 678 FKNGSCSCKDFW 689
           F+NG CSC D+W
Sbjct: 691 FRNGQCSCGDYW 702



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 86/202 (42%), Gaps = 9/202 (4%)

Query: 307 MLIGDVLPNDATLVSALSAV----AGLAVLNKGRWMHSYIVKNGFV--VDGVLGTLLIQM 360
           ML G       TLVS L AV    A  A +  GR  H++ +KNG +          L+ M
Sbjct: 1   MLAGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSM 60

Query: 361 YSKCGSIESALTVFRAISKKK--VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI 418
           Y++ G +  A  +F   +  +  V  W  M+  L   GM  +A+     M  +G++P  +
Sbjct: 61  YARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGV 120

Query: 419 TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIES 478
           TF   L ACS   L++ GR     +I D  +         LVD+      + +A+   + 
Sbjct: 121 TFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDM 180

Query: 479 MP-MRPNFVIWMSLLSGARNHG 499
           +P       +W +++ G    G
Sbjct: 181 VPDSGKQLGMWNAMICGYAQAG 202


>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 596

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 231/629 (36%), Positives = 346/629 (55%), Gaps = 67/629 (10%)

Query: 64  VDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALT---LFCDLLDRFLLP 120
           +DP   ++ YA  +  R    P++ L+N  I+ +   +R    L+   LF  +    L P
Sbjct: 32  LDPS-GDIDYALLLLLRTSTPPTVFLFNTTIRGFSRARRPGSLLSSVLLFVRMGVLSLAP 90

Query: 121 DNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVF 180
           +NFT   + +G +   A                                    DLGR+  
Sbjct: 91  NNFTFTFLFQGCSNCVAF-----------------------------------DLGRQ-- 113

Query: 181 DAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIARE 240
                           G V K   E+           D+F    ++  +S CG++  AR 
Sbjct: 114 --------------FHGMVIKNSFEM-----------DVFVRNSIIRFYSVCGRLNDARW 148

Query: 241 IFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEA 300
           +F      ++VSWN+MI+G ++ G++  A  LF  M  R+ I+WN MI+GY  NG+  EA
Sbjct: 149 VFDESSELDVVSWNSMIDGCIRNGNILEALSLFSKMTERNDISWNMMISGYAQNGQPKEA 208

Query: 301 LELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQM 360
           L L   M + D  PN A LVS LSA + L  L+ G W+H YI K    VD +L   LI M
Sbjct: 209 LALFREMQMLDQEPNSAILVSVLSACSQLGALDHGCWVHCYIGKKCVRVDSILSAALIDM 268

Query: 361 YSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITF 420
           Y+KCGSI+ A+  F    K+ V  +TA I GL M+G + +AL LF +M   G+ P  +++
Sbjct: 269 YAKCGSIDLAMQAFSTSRKRDVSAYTAAISGLAMNGCSEEALQLFEQMKGEGISPDGVSY 328

Query: 421 IGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP 480
           I VL ACSHAG V  G  YF  M + +GI P ++HY C+VD+L R G LEEA+  + SMP
Sbjct: 329 IAVLCACSHAGWVEKGFHYFASMSDVHGIRPELDHYACMVDLLGRAGLLEEAEKFVASMP 388

Query: 481 MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSE 540
           ++P+ VIW +LL   R +GN ++G+   + L++   +  G Y++LSNIYA + + +   +
Sbjct: 389 IKPDNVIWGALLGACRVYGNAEMGQRVGSLLVESDQNHDGRYILLSNIYAESMKGEDAEQ 448

Query: 541 VREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPD 600
           VR+ M++R   + PG S IE  G +HEF  GD+SH +T+EI+    E+  ++K  G+  +
Sbjct: 449 VRKTMRRRKVDRVPGCSLIEVAGFVHEFFSGDRSHEKTEEIYLMWEEIVKEIKKFGYREE 508

Query: 601 TTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLS 660
           T  V+  +E++ EKEA + +HSE+LA+AFG +  KS S +RIVKN+R+C+DCH   KL+S
Sbjct: 509 TRAVVFDVEEE-EKEAVIGHHSEKLAVAFGFLYTKSGSTLRIVKNIRICSDCHYAIKLVS 567

Query: 661 GIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            ++ R+I +RD   FHHF+ G CSCKD+W
Sbjct: 568 KVFKRKIAIRDRKCFHHFEEGLCSCKDYW 596


>gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
 gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
          Length = 1067

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 236/669 (35%), Positives = 379/669 (56%), Gaps = 20/669 (2%)

Query: 35   KETQQLHALSVKTNLI-YHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLL 93
            ++  ++HA  +++ L+     I + L+++Y       ++ A  +F R++ +   V +N +
Sbjct: 405  RKGSEVHAFLIRSGLLNAQIAIGNGLINMYAK--CGAINDACVVF-RLMDNKDSVTWNSM 461

Query: 94   IKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGF 153
            I     N++  EA+  F ++    L P NFT+   +   A LG I  G+Q+H    KLG 
Sbjct: 462  ITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMISALSSCASLGWISVGEQLHCEGLKLGL 521

Query: 154  GFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGE------VEVA 207
              D  V ++L+++Y + G +   ++ F  M D D VSWN LI G +   E      VE  
Sbjct: 522  DLDVSVSNALLALYGECGYVKECQKAFSLMLDYDHVSWNSLI-GALADSEPSMLEAVESF 580

Query: 208  MKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS----WNAMINGYMKA 263
            + +     D +  ++  ++   S     E+ ++I   +  RN+ +     NA++  Y K 
Sbjct: 581  LVMMRAGWDPNRVTFITILAAVSSLSLHELGKQIHALVLKRNVAADTAIENALLACYGKC 640

Query: 264  GDVDSACELFDDMEIR-DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSA 322
            GD+     +F  M  R D ++WNSMI+GY  N    +A++++  M+      +  T  + 
Sbjct: 641  GDMGYCENIFSRMSDRQDEVSWNSMISGYIHNELLPKAMDMVWFMMQKGQRLDGFTFATV 700

Query: 323  LSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKV 382
            LSA A +A L +G  +H   V+     D V+G+ L+ MY+KCG I+ A   F  +  + +
Sbjct: 701  LSACATVATLERGMEVHGCSVRACLESDIVIGSALVDMYAKCGRIDYASRFFEMMPARNL 760

Query: 383  GHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNM 442
              W +MI G   HG  T++LDLF +M   G  P  +TF+GVL+ACSHAGLVN+G  +F+ 
Sbjct: 761  YSWNSMISGYARHGHGTKSLDLFAQMKLQGPLPDHVTFVGVLSACSHAGLVNEGFSHFDS 820

Query: 443  MINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGA--RNHGN 500
            M   YG+ P +EH+ C+VD+L R G L + +  +  MP++PN +IW ++L      N  N
Sbjct: 821  MSEIYGLAPRMEHFSCMVDLLGRVGELNKMEDFLNQMPVKPNVLIWRTVLGACCRANGRN 880

Query: 501  KDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIE 560
              +G  AA  L+++ P     Y++LSN+YA+ G+WD V++ R  M+K   +K+ G S + 
Sbjct: 881  TALGRRAAEMLLEMEPTNAVNYILLSNMYASGGKWDDVAKTRVAMRKAFVKKEAGCSWVT 940

Query: 561  HRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELEN 620
             +  +H FV GDKSHP+ D I+ KL E+  K++ AG++P+T   L  +E +  KE  L  
Sbjct: 941  MKDGVHVFVAGDKSHPEKDLIYEKLKELNGKMRLAGYIPETRFALYDLEGES-KEELLSY 999

Query: 621  HSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKN 680
            HSE++A+AF ++   S+ PIRI+KNLRVC DCHS  K +S I  R+I++RD++RFHHF+N
Sbjct: 1000 HSEKIAVAF-VLTRPSKMPIRILKNLRVCGDCHSAFKYISQIVERQIVLRDSNRFHHFEN 1058

Query: 681  GSCSCKDFW 689
            G CSC DFW
Sbjct: 1059 GKCSCGDFW 1067



 Score =  167 bits (422), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 136/514 (26%), Positives = 244/514 (47%), Gaps = 47/514 (9%)

Query: 6   LQHSSPIHALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVD 65
           +QH   I +L Q           ++S   K+ ++LH    K   +    + + L+++Y  
Sbjct: 70  VQHDEKIESLAQRY---------RYSCGSKDAEELHLQLFKNGFVNDLFLCNTLINIYA- 119

Query: 66  PHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTL 125
             + +L   R +FD +    +LV ++ LI  Y  N+  +EA  LF  ++    +P+++  
Sbjct: 120 -RVGDLGSGRKVFDEMPLR-NLVSWSCLISGYTRNRMPNEACELFRKMVSDGFMPNHYAF 177

Query: 126 PCVIKGAARLG--AIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAK-FGEIDLGRRVFDA 182
             VI+     G   +K G QIHGL+ K  +  D    + L+SMY    G +D  RR FD+
Sbjct: 178 GSVIRACQECGEYGLKFGMQIHGLMSKTQYVNDVTASNVLISMYGNALGMVDYARRAFDS 237

Query: 183 MDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM----------PDR----DLFSWTCLVDG 228
           +  ++LVS N +I  Y ++G+   A  +F  M          P+      L S TC    
Sbjct: 238 IWPRNLVSLNSMISVYCQRGDAVSAFDIFSTMQKEVMGDGLKPNEYTFGSLISATC---S 294

Query: 229 FSKCGKVEIAREIFYRMPN----RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITW 284
            +  G V +  ++  R+       +L   +A+++G+ KAG +  A  +F  M  R++++ 
Sbjct: 295 LANSGLV-LLEQLLTRVEKSGFLHDLYVGSALVSGFAKAGSIGYAKNIFQKMSYRNVVSL 353

Query: 285 NSMIAGYELNGRFMEALELLETMLIG-DVLPNDATLVSALSAVAGLAVLN----KGRWMH 339
           N +I G     R  EA+EL   M    ++ PN   ++  L+A     VL     KG  +H
Sbjct: 354 NGLIIGLVRQKRGEEAVELFMEMKDSVELNPNSYMII--LTAFPEFHVLENGKRKGSEVH 411

Query: 340 SYIVKNGFVVDGV-LGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMA 398
           ++++++G +   + +G  LI MY+KCG+I  A  VFR +  K    W +MI GL  +   
Sbjct: 412 AFLIRSGLLNAQIAIGNGLINMYAKCGAINDACVVFRLMDNKDSVTWNSMITGLDQNKQF 471

Query: 399 TQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGC 458
            +A+  F +M R  + P+  T I  L++C+  G ++ G +     +   G++  +     
Sbjct: 472 LEAVKTFQEMRRTELYPSNFTMISALSSCASLGWISVGEQLHCEGLK-LGLDLDVSVSNA 530

Query: 459 LVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLL 492
           L+ +    GY++E +    S+ +  + V W SL+
Sbjct: 531 LLALYGECGYVKECQKAF-SLMLDYDHVSWNSLI 563



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 105/379 (27%), Positives = 195/379 (51%), Gaps = 27/379 (7%)

Query: 139 KEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGY 198
           K+ +++H  +FK GF  D F+ ++L+++YA+ G++  GR+VFD M  ++LVSW+CLI GY
Sbjct: 90  KDAEELHLQLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGY 149

Query: 199 VKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGK--VEIAREIFYRMPNRNLV- 251
            +      A +LF +M         +++  ++    +CG+  ++   +I   M     V 
Sbjct: 150 TRNRMPNEACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVN 209

Query: 252 ---SWNAMINGYMKA-GDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETM 307
              + N +I+ Y  A G VD A   FD +  R+L++ NSMI+ Y   G  + A ++  TM
Sbjct: 210 DVTASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTM 269

Query: 308 ---LIGDVL-PNDATLVSALSAVAGLAVLNKG----RWMHSYIVKNGFVVDGVLGTLLIQ 359
              ++GD L PN+ T  S +SA   LA  N G      + + + K+GF+ D  +G+ L+ 
Sbjct: 270 QKEVMGDGLKPNEYTFGSLISATCSLA--NSGLVLLEQLLTRVEKSGFLHDLYVGSALVS 327

Query: 360 MYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAIT 419
            ++K GSI  A  +F+ +S + V     +I+GL       +A++LF +M +  ++    +
Sbjct: 328 GFAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEM-KDSVELNPNS 386

Query: 420 FIGVLNACSHAGLVNDGRR----YFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKST 475
           ++ +L A     ++ +G+R        +I    +   I     L+++  + G + +A   
Sbjct: 387 YMIILTAFPEFHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDACVV 446

Query: 476 IESMPMRPNFVIWMSLLSG 494
              M  + + V W S+++G
Sbjct: 447 FRLMDNKDS-VTWNSMITG 464



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 135/278 (48%), Gaps = 17/278 (6%)

Query: 32  STHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYN 91
           S H+  +Q+HAL +K N+   + I + LL+ Y      ++ Y  +IF R+      V +N
Sbjct: 606 SLHELGKQIHALVLKRNVAADTAIENALLACY--GKCGDMGYCENIFSRMSDRQDEVSWN 663

Query: 92  LLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKL 151
            +I  Y+ N+   +A+ +   ++ +    D FT   V+   A +  ++ G ++HG   + 
Sbjct: 664 SMISGYIHNELLPKAMDMVWFMMQKGQRLDGFTFATVLSACATVATLERGMEVHGCSVRA 723

Query: 152 GFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLF 211
               D  + S+LV MYAK G ID   R F+ M  ++L SWN +I GY + G    ++ LF
Sbjct: 724 CLESDIVIGSALVDMYAKCGRIDYASRFFEMMPARNLYSWNSMISGYARHGHGTKSLDLF 783

Query: 212 DEM----PDRDLFSWTCLVDGFSKCGKV-------EIAREIFYRMPNRNLVSWNAMINGY 260
            +M    P  D  ++  ++   S  G V       +   EI+   P   +  ++ M++  
Sbjct: 784 AQMKLQGPLPDHVTFVGVLSACSHAGLVNEGFSHFDSMSEIYGLAP--RMEHFSCMVDLL 841

Query: 261 MKAGDVDSACELFDDMEIR-DLITWNSMI-AGYELNGR 296
            + G+++   +  + M ++ +++ W +++ A    NGR
Sbjct: 842 GRVGELNKMEDFLNQMPVKPNVLIWRTVLGACCRANGR 879


>gi|224141427|ref|XP_002324074.1| predicted protein [Populus trichocarpa]
 gi|222867076|gb|EEF04207.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 240/626 (38%), Positives = 345/626 (55%), Gaps = 58/626 (9%)

Query: 119 LPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF---DKFVLSSLVSMYAKFGEIDL 175
           LP  F    +++  AR  ++  GK++H ++   G      + F+L++L  +YA  G    
Sbjct: 14  LPARFR--SLLRSCARNSSLSTGKKLHAVILTSGLASSSPNTFLLNALHHLYASCGVTSS 71

Query: 176 GRRVFDAM--DDKDLVSWNCLIDGYVKKG-----------EVEVAMKLFDEMPDRDLF-- 220
            R +F  +    KD+  W  L+   V+ G           E+     + D++    +F  
Sbjct: 72  ARHLFYQIPRSHKDVTDWTTLLTSLVQHGTKPSEGFFFFKEMRKEGVVLDDVAMISVFVL 131

Query: 221 ------------SWTCLV---------------DGFSKCGKVEIAREIFYRMPNRNLVSW 253
                       +  CLV               + + KCG VE  R +F  M  RN+VSW
Sbjct: 132 CTRVEDLGMGRQAQGCLVKMGLGLGVKVCNAIMNMYVKCGLVEEVRRVFCEMNERNVVSW 191

Query: 254 NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL 313
           + ++ G +K   V++   +FD+M  R+ + W  MIAGY  NG   E   LL+ M++   L
Sbjct: 192 STLLEGVVKWEGVENGRVVFDEMPERNEVGWTIMIAGYVGNGFSREGFLLLDEMVLRFRL 251

Query: 314 P-NDATLVSALSAVAGLAVLNKGRWMHSYIVKN-GFVVDGVLGTLLIQMYSKCGSIESAL 371
             N  TL S LSA A    +  GRW+H Y +K  G  +  ++GT L+ MY+KCG I+ A 
Sbjct: 252 GLNFVTLSSILSACAQSGDVLMGRWVHVYALKGMGREMHIMVGTALVDMYAKCGPIDMAF 311

Query: 372 TVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAG 431
            VF+ + K+ V  W AM+ GL MHG     LD+F KM     KP  +TF+ VL+ACSH+G
Sbjct: 312 KVFKYLPKRNVVAWNAMLGGLAMHGRGKFVLDIFPKMIEEA-KPDDLTFMAVLSACSHSG 370

Query: 432 LVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSL 491
           LV+ G  YF  + ++YG  P IEHY C+VDIL R G+LEEA   I+ MPM PN V+  SL
Sbjct: 371 LVDQGYHYFRSLESEYGTTPKIEHYACMVDILGRAGHLEEAVMLIKKMPMCPNEVVLGSL 430

Query: 492 LSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFR 551
           L     HG   +GE     LI++       +V+LSN+Y   G+ DK + +R+++K +G R
Sbjct: 431 LGSCNAHGKLQLGERILQELIQMDGHNTEYHVLLSNMYVLEGKQDKANSLRQILKSKGIR 490

Query: 552 KDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLL----- 606
           K PG SSI   G +H+F  GDKSHP T EI+  L+ M  +L+ AG+VP+TT  +      
Sbjct: 491 KVPGVSSIYVGGNIHQFSAGDKSHPLTKEIYHALNNMIQRLRLAGYVPNTTNQVFPGSDG 550

Query: 607 ---CIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIY 663
                E+ +EKE  L  HSE+LA+ FG I+ K  +P+ I KNLR+C DCHS  K++S IY
Sbjct: 551 REGSSEEMEEKEQALFLHSEKLAVCFGHISTKPGAPLYIFKNLRICQDCHSAIKIVSKIY 610

Query: 664 NREIIVRDNSRFHHFKNGSCSCKDFW 689
           NREI++RD +RFH FK+GSCSC D+W
Sbjct: 611 NREIVIRDRNRFHCFKHGSCSCSDYW 636



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 117/485 (24%), Positives = 212/485 (43%), Gaps = 100/485 (20%)

Query: 17  QHLPSRLHWNILKF---SSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHY 73
           Q LP+R   ++L+    +S+    ++LHA+      I  SG++S   + ++   +N LH+
Sbjct: 12  QSLPARFR-SLLRSCARNSSLSTGKKLHAV------ILTSGLASSSPNTFL---LNALHH 61

Query: 74  ----------ARSIFDRILQ-HPSLVLYNLLIKCYV-FNQRSHEALTLFCDLLDRFLLPD 121
                     AR +F +I + H  +  +  L+   V    +  E    F ++    ++ D
Sbjct: 62  LYASCGVTSSARHLFYQIPRSHKDVTDWTTLLTSLVQHGTKPSEGFFFFKEMRKEGVVLD 121

Query: 122 NFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFD 181
           +  +  V     R+  +  G+Q  G + K+G G    V +++++MY K G ++  RRVF 
Sbjct: 122 DVAMISVFVLCTRVEDLGMGRQAQGCLVKMGLGLGVKVCNAIMNMYVKCGLVEEVRRVFC 181

Query: 182 AMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLV-----DGFSKCGKVE 236
            M+++++VSW+ L++G VK   VE    +FDEMP+R+   WT ++     +GFS+ G + 
Sbjct: 182 EMNERNVVSWSTLLEGVVKWEGVENGRVVFDEMPERNEVGWTIMIAGYVGNGFSREGFLL 241

Query: 237 IAREIFYRMPNRNLVS------------------W------------------NAMINGY 260
           +   +       N V+                  W                   A+++ Y
Sbjct: 242 LDEMVLRFRLGLNFVTLSSILSACAQSGDVLMGRWVHVYALKGMGREMHIMVGTALVDMY 301

Query: 261 MKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLV 320
            K G +D A ++F  +  R+++ WN+M+ G  ++GR    L++   M I +  P+D T +
Sbjct: 302 AKCGPIDMAFKVFKYLPKRNVVAWNAMLGGLAMHGRGKFVLDIFPKM-IEEAKPDDLTFM 360

Query: 321 SALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKK 380
           + LSA +           HS +V  G              Y    S+ES        +  
Sbjct: 361 AVLSACS-----------HSGLVDQG--------------YHYFRSLESEYG-----TTP 390

Query: 381 KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYF 440
           K+ H+  M+  LG  G   +A+ L  K   M M P  +    +L +C+  G +  G R  
Sbjct: 391 KIEHYACMVDILGRAGHLEEAVMLIKK---MPMCPNEVVLGSLLGSCNAHGKLQLGERIL 447

Query: 441 NMMIN 445
             +I 
Sbjct: 448 QELIQ 452


>gi|357449183|ref|XP_003594868.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355483916|gb|AES65119.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 874

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 249/690 (36%), Positives = 372/690 (53%), Gaps = 60/690 (8%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +Q+HA  ++ N  + +  ++ L+++Y    +  ++ A+++FD +     LV +N +I   
Sbjct: 207 KQVHAFVLR-NGDWRTFTNNALVTMYAK--LGRVYEAKTLFD-VFDDKDLVSWNTIISSL 262

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVF-KLGFGFD 156
             N R  EAL     +L   + P+  TL  V+   + L  +  GK+IH  V        +
Sbjct: 263 SQNDRFEEALLYLHVMLQSGVRPNGVTLASVLPACSHLEMLGCGKEIHAFVLMNNDLIEN 322

Query: 157 KFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD 216
            FV  +LV MY    + + GR VFD M  + +  WN +I GYV+      A++LF EM  
Sbjct: 323 SFVGCALVDMYCNCKQPEKGRLVFDGMFRRTIAVWNAMIAGYVRNEFDYEAIELFVEMVF 382

Query: 217 RDLFS--WTCLVDGFSKCGKVE--IAREIFYRMPNRNLVSW---------NAMINGYMKA 263
               S     L      C + E  + +E  +      +V W         NA+++ Y + 
Sbjct: 383 ELGLSPNSVTLSSVLPACVRCESFLDKEGIHSC----VVKWGFEKDKYVQNALMDMYSRM 438

Query: 264 GDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGD------------ 311
           G ++ A  +F  M  +D+++WN+MI GY + GR  +AL LL  M  G             
Sbjct: 439 GRIEIARSIFGSMNRKDIVSWNTMITGYVVCGRHDDALNLLHDMQRGQAEHRINTFDDYE 498

Query: 312 ------VLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCG 365
                 + PN  TL++ L   A LA L KG+ +H+Y VK     D  +G+ L+ MY+KCG
Sbjct: 499 DNKNFPLKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQMLSKDVAVGSALVDMYAKCG 558

Query: 366 SIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG-----MKPTAITF 420
            +  + TVF  +S + V  W  +I+  GMHG   +AL LF +M   G     ++P  +T+
Sbjct: 559 CLNLSRTVFEQMSVRNVITWNVLIMAYGMHGKGEEALKLFRRMVEEGDNNREIRPNEVTY 618

Query: 421 IGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP 480
           I +  + SH+G+V++G   F  M   +GIEPT +HY CLVD+L R+G +EEA + I++MP
Sbjct: 619 IAIFASLSHSGMVDEGLNLFYTMKAKHGIEPTSDHYACLVDLLGRSGQIEEAYNLIKTMP 678

Query: 481 MRPNFV-IWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVS 539
                V  W SLL   + H N +IGE AA NL  + P+ +         Y       K S
Sbjct: 679 SNMKKVDAWSSLLGACKIHQNLEIGEIAAKNLFVLDPNVLD--------YGT-----KQS 725

Query: 540 EVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVP 599
            +   MK++G RK+PG S IEH   +H+F+ GD SHPQ+ E+H  L  +  ++K  G+VP
Sbjct: 726 MLGRKMKEKGVRKEPGCSWIEHGDEVHKFLAGDVSHPQSKEVHEYLETLSLRMKKEGYVP 785

Query: 600 DTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLL 659
           DT+ VL  +  ++EKE  L  HSERLAIAFGL+N    + IR+ KNLRVCNDCH  TK +
Sbjct: 786 DTSCVLHNV-GEEEKETMLCGHSERLAIAFGLLNTSPGTTIRVAKNLRVCNDCHVATKFI 844

Query: 660 SGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           S I +REII+RD  RFHHF+NG+CSC D+W
Sbjct: 845 SKIVDREIILRDVRRFHHFRNGTCSCGDYW 874



 Score =  198 bits (503), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 142/481 (29%), Positives = 226/481 (46%), Gaps = 35/481 (7%)

Query: 104 HEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSL 163
           H+A++ + +++   + PDNF  P V+K  A +  +  GKQ+H  VFK G      V +SL
Sbjct: 67  HQAISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHVFKFGQALPTAVPNSL 126

Query: 164 VSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL--FS 221
           V+MY K G+ID  RRVFD + ++D VSWN +I+   +  E E+A+ LF  M   ++   S
Sbjct: 127 VNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLMLLENVGPTS 186

Query: 222 WTCLVDGFSKCGKV-------EIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFD 274
           +T LV     C  +       +       R  +    + NA++  Y K G V  A  LFD
Sbjct: 187 FT-LVSVAHACSNLINGLLLGKQVHAFVLRNGDWRTFTNNALVTMYAKLGRVYEAKTLFD 245

Query: 275 DMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNK 334
             + +DL++WN++I+    N RF EAL  L  ML   V PN  TL S L A + L +L  
Sbjct: 246 VFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASVLPACSHLEMLGC 305

Query: 335 GRWMHSYIV-KNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLG 393
           G+ +H++++  N  + +  +G  L+ MY  C   E    VF  + ++ +  W AMI G  
Sbjct: 306 GKEIHAFVLMNNDLIENSFVGCALVDMYCNCKQPEKGRLVFDGMFRRTIAVWNAMIAGYV 365

Query: 394 MHGMATQALDLFNKMC-RMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT 452
            +    +A++LF +M   +G+ P ++T   VL AC       D     + ++  +G E  
Sbjct: 366 RNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACVRCESFLDKEGIHSCVVK-WGFEKD 424

Query: 453 IEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKD---------- 502
                 L+D+  R G +E A+S   SM  R + V W ++++G    G  D          
Sbjct: 425 KYVQNALMDMYSRMGRIEIARSIFGSMN-RKDIVSWNTMITGYVVCGRHDDALNLLHDMQ 483

Query: 503 ----------IGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRK 552
                       +Y  N    + P+++    VL    AA     K  E+     K+   K
Sbjct: 484 RGQAEHRINTFDDYEDNKNFPLKPNSVTLMTVLPGC-AALAALGKGKEIHAYAVKQMLSK 542

Query: 553 D 553
           D
Sbjct: 543 D 543



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 136/495 (27%), Positives = 221/495 (44%), Gaps = 43/495 (8%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +QLHA   K      + + + L+++Y      ++  AR +FD I      V +N +I   
Sbjct: 105 KQLHAHVFKFGQALPTAVPNSLVNMY--GKCGDIDAARRVFDEITNRDD-VSWNSMINAA 161

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARL-GAIKEGKQIHGLVFKLGFGFD 156
              +    A+ LF  +L   + P +FTL  V    + L   +  GKQ+H  V + G  + 
Sbjct: 162 CRFEEWELAVHLFRLMLLENVGPTSFTLVSVAHACSNLINGLLLGKQVHAFVLRNG-DWR 220

Query: 157 KFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD 216
            F  ++LV+MYAK G +   + +FD  DDKDLVSWN +I    +    E A+     M  
Sbjct: 221 TFTNNALVTMYAKLGRVYEAKTLFDVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQ 280

Query: 217 RDLF-SWTCLVDGFSKCGKVEI---AREIF-YRMPNRNLVSWN----AMINGYMKAGDVD 267
             +  +   L      C  +E+    +EI  + + N +L+  +    A+++ Y      +
Sbjct: 281 SGVRPNGVTLASVLPACSHLEMLGCGKEIHAFVLMNNDLIENSFVGCALVDMYCNCKQPE 340

Query: 268 SACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIG-DVLPNDATLVSALSAV 326
               +FD M  R +  WN+MIAGY  N    EA+EL   M+    + PN  TL S L A 
Sbjct: 341 KGRLVFDGMFRRTIAVWNAMIAGYVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPAC 400

Query: 327 AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWT 386
                      +HS +VK GF  D  +   L+ MYS+ G IE A ++F ++++K +  W 
Sbjct: 401 VRCESFLDKEGIHSCVVKWGFEKDKYVQNALMDMYSRMGRIEIARSIFGSMNRKDIVSWN 460

Query: 387 AMIVGLGMHGMATQALDLFNKMCR------------------MGMKPTAITFIGVLNACS 428
            MI G  + G    AL+L + M R                    +KP ++T + VL  C+
Sbjct: 461 TMITGYVVCGRHDDALNLLHDMQRGQAEHRINTFDDYEDNKNFPLKPNSVTLMTVLPGCA 520

Query: 429 HAGLVNDGRRYFNMMINDYGIEPTIEH----YGCLVDILCRTGYLEEAKSTIESMPMRPN 484
               +  G+      I+ Y ++  +         LVD+  + G L  +++  E M +R N
Sbjct: 521 ALAALGKGKE-----IHAYAVKQMLSKDVAVGSALVDMYAKCGCLNLSRTVFEQMSVR-N 574

Query: 485 FVIWMSLLSGARNHG 499
            + W  L+     HG
Sbjct: 575 VITWNVLIMAYGMHG 589



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 97/200 (48%), Gaps = 8/200 (4%)

Query: 297 FMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTL 356
           F +A+     M+   V P++    + L A AG+  LN G+ +H+++ K G  +   +   
Sbjct: 66  FHQAISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHVFKFGQALPTAVPNS 125

Query: 357 LIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT 416
           L+ MY KCG I++A  VF  I+ +    W +MI           A+ LF  M    + PT
Sbjct: 126 LVNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLMLLENVGPT 185

Query: 417 AITFIGVLNACSHAGLVND---GRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAK 473
           + T + V +ACS+  L+N    G++    ++ + G   T  +   LV +  + G + EAK
Sbjct: 186 SFTLVSVAHACSN--LINGLLLGKQVHAFVLRN-GDWRTFTN-NALVTMYAKLGRVYEAK 241

Query: 474 STIESMPMRPNFVIWMSLLS 493
           +  +    + + V W +++S
Sbjct: 242 TLFDVFDDK-DLVSWNTIIS 260


>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
 gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 230/609 (37%), Positives = 331/609 (54%), Gaps = 71/609 (11%)

Query: 118 LLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGR 177
           L  D  T   +IK     GA+++ + +H  VF  G+    F++++L++MY          
Sbjct: 12  LSADAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINMY---------- 61

Query: 178 RVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEI 237
                                VK G ++ A  LFDEMPDR++ SWT ++  +S       
Sbjct: 62  ---------------------VKFGLLDEARNLFDEMPDRNVVSWTTMISAYSNSNLNHK 100

Query: 238 AREIFYRM------PN------------------------------RNLVSWNAMINGYM 261
           A +    M      PN                               ++   +A+I+ Y 
Sbjct: 101 ALDFLILMLREGVRPNMYTYSSVLRACDGLLNLRQLHGSILKVGLESDVFVRSALIDTYS 160

Query: 262 KAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVS 321
           K G+   A  +F++M   DL+ WNS+I G+  N    E L L + M   D + + +TL S
Sbjct: 161 KLGEQHDALNVFNEMITGDLVVWNSIIGGFAQNSDGDETLHLYKRMKRADFVADQSTLTS 220

Query: 322 ALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVF-RAISKK 380
            L A  GLA+L  GR +H +++K  +  D +L   L+ MY KCGS+E A  +F R +++K
Sbjct: 221 VLRACTGLALLELGRQVHVHVLK--YDQDLILNNALLDMYCKCGSLEDANLLFTRMMTEK 278

Query: 381 KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYF 440
            V  W+ MI GL  +G +  AL LF  M   G KP  IT +GVL ACSHAGLVNDG  YF
Sbjct: 279 DVISWSTMIAGLAQNGFSADALKLFEAMKSKGPKPNYITILGVLFACSHAGLVNDGWYYF 338

Query: 441 NMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGN 500
             M   +GI+P  EHYGC++D+L R G L+EA   I  M   P+ V W  LL   R H N
Sbjct: 339 QSMKEHFGIDPGREHYGCIIDLLGRAGKLDEAVKLIHEMNHEPDAVTWRILLGACRVHKN 398

Query: 501 KDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIE 560
            D+  YAA  ++K+ P   G Y++LSNIYA + +W+ V+EVR  M+ RG +KDPG S IE
Sbjct: 399 VDLAIYAAKEILKLDPADAGTYILLSNIYANSQKWEDVAEVRRKMRTRGVKKDPGCSWIE 458

Query: 561 HRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELEN 620
               +H F++GD SHP+ +EI  +LS++  +L   G+VPDT  VL  +E + + E  L+ 
Sbjct: 459 VSKQVHAFILGDNSHPRIEEIKRELSQLIQRLMRLGYVPDTNFVLQDLEGE-QMEDSLQY 517

Query: 621 HSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKN 680
           HSE+LAI FGL+++ ++  I I KNLR+C DCH   KL+S + NR I++RD  R+HHF+ 
Sbjct: 518 HSEKLAIVFGLMSLPNQKTIHIRKNLRICGDCHIFAKLVSQLENRVIVIRDPIRYHHFRG 577

Query: 681 GSCSCKDFW 689
           G CSC D+W
Sbjct: 578 GVCSCGDYW 586


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 233/640 (36%), Positives = 356/640 (55%), Gaps = 48/640 (7%)

Query: 59  LLSLYVDP-HINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRF 117
           LLS Y     I NL   ++ FDR+    S V YN  I  +  N    E+L LF  +    
Sbjct: 95  LLSAYAKSGSIQNL---KATFDRMPFRDS-VSYNTTIAGFSGNSCPQESLELFKRMQREG 150

Query: 118 LLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGR 177
             P  +T+  ++  +A+L  ++ GKQIHG +    F  + F+                  
Sbjct: 151 FEPTEYTIVSILNASAQLLDLRYGKQIHGSIIVRNFLGNVFI------------------ 192

Query: 178 RVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEI 237
                        WN L D Y K GE+E A  LFD +  ++L SW  ++ G++K G+ E 
Sbjct: 193 -------------WNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEK 239

Query: 238 AREIFYRM------PNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGY 291
              + ++M      P++  V+ + +I  Y + G VD A  +F + + +D++ W +M+ GY
Sbjct: 240 CIGLLHQMRLSGHMPDQ--VTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGY 297

Query: 292 ELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDG 351
             NGR  +AL L   ML+  + P+  TL S +S+ A LA L+ G+ +H   +  G   + 
Sbjct: 298 AKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNL 357

Query: 352 VLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRM 411
           ++ + LI MYSKCG I+ A +VF  +  + V  W AMIVG   +G    AL+LF  M + 
Sbjct: 358 LVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQ 417

Query: 412 GMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEE 471
             KP  +TFIG+L+AC H   +  G+ YF+ + N +G+ PT++HY C+V++L RTG +E+
Sbjct: 418 KFKPDNVTFIGILSACLHCNWIEQGQEYFDSISNQHGMTPTLDHYACMVNLLGRTGRIEQ 477

Query: 472 AKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAA 531
           A + I++M   P+F+IW +LLS     G+    E AA +L ++ P     Y++LSN+YA+
Sbjct: 478 AVALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYAS 537

Query: 532 AGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNK 591
            G+W  V+ VR +MK +  +K  G S IE    +H F   D++HP++++I+ KL+ +  K
Sbjct: 538 MGRWKDVASVRNLMKSKNVKKFAGFSWIEIDNEVHRFTSEDRTHPESEDIYEKLNMLIGK 597

Query: 592 LKAAGHVPDTTQVLLCI-EDQKEKEAELENHSERLAIAFGLINVKSR-SPIRIVKNLRVC 649
           L+  G  P+T  VL  + ED+K K      HSE+LA+AFGLI   +  SPIRI+KN+R+C
Sbjct: 598 LQEEGFTPNTNLVLHDVGEDEKFKSICF--HSEKLALAFGLIKKPNGISPIRIIKNIRIC 655

Query: 650 NDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           NDCH   K  S I  R+II+RD++RFHHF  G CSC D W
Sbjct: 656 NDCHEFMKFASRIIGRQIILRDSNRFHHFSTGKCSCNDNW 695



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 110/412 (26%), Positives = 184/412 (44%), Gaps = 78/412 (18%)

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP 215
           D F+ + L+ +YAKFG++   + +FD M  +D  SWN L+  Y K G ++     FD MP
Sbjct: 57  DSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRDXFSWNALLSAYAKSGSIQNLKATFDRMP 116

Query: 216 DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR--------------------------- 248
            RD  S+   + GFS     + + E+F RM                              
Sbjct: 117 FRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLLDLRYGKQ 176

Query: 249 ------------NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGR 296
                       N+  WNA+ + Y K G+++ A  LFD +  ++L++WN MI+GY  NG+
Sbjct: 177 IHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQ 236

Query: 297 FMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTL 356
             + + LL  M +   +P+  T+ + ++A                               
Sbjct: 237 PEKCIGLLHQMRLSGHMPDQVTMSTIIAA------------------------------- 265

Query: 357 LIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT 416
               Y +CG ++ A  VF    +K +  WTAM+VG   +G    AL LFN+M    ++P 
Sbjct: 266 ----YCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPD 321

Query: 417 AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTI 476
           + T   V+++C+    ++ G+      I   G+   +     L+D+  + G++++A+S  
Sbjct: 322 SYTLSSVVSSCAKLASLHHGQAVHGKSI-LAGLNNNLLVSSALIDMYSKCGFIDDARSVF 380

Query: 477 ESMPMRPNFVIWMSLLSG-ARNHGNKDIGEYAANNL-IKVAPDTIGCYVVLS 526
             MP R N V W +++ G A+N  +KD  E   N L  K  PD +    +LS
Sbjct: 381 NLMPTR-NVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILS 431



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/248 (31%), Positives = 127/248 (51%), Gaps = 5/248 (2%)

Query: 199 VKKGEVEVAMKLFDEMPDR-----DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSW 253
           V+  E+  A +L   M        D F    L+  ++K GK+  A+ +F +M  R+  SW
Sbjct: 33  VRTNEINQAKRLQSHMEHHLFQPTDSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRDXFSW 92

Query: 254 NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL 313
           NA+++ Y K+G + +    FD M  RD +++N+ IAG+  N    E+LEL + M      
Sbjct: 93  NALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFE 152

Query: 314 PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTV 373
           P + T+VS L+A A L  L  G+ +H  I+   F+ +  +   L  MY+KCG IE A  +
Sbjct: 153 PTEYTIVSILNASAQLLDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWL 212

Query: 374 FRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLV 433
           F  ++KK +  W  MI G   +G   + + L ++M   G  P  +T   ++ A    G V
Sbjct: 213 FDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRV 272

Query: 434 NDGRRYFN 441
           ++ RR F+
Sbjct: 273 DEARRVFS 280


>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 222/584 (38%), Positives = 332/584 (56%), Gaps = 28/584 (4%)

Query: 116  RFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDL 175
            ++ LP N T         ++  +     +HG++  L       V + LV  Y+ +  +D 
Sbjct: 744  KWFLPTNLT---------QVRQVHXQASVHGMLQNL------IVANKLVXFYSYYRALDD 788

Query: 176  GRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGF 229
               +FD M  +D VSW+ ++ G+ K G+       F E+      PD   ++   ++   
Sbjct: 789  AYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDN--YTLPFVIRAC 846

Query: 230  SKCGKVEIAREIFYRMPNRNL----VSWNAMINGYMKAGDVDSACELFDDMEIRDLITWN 285
                 +++ R I + +    L        A+++ Y K  +++ A  LFD M  RDL+TW 
Sbjct: 847  RDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMXERDLVTWT 906

Query: 286  SMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKN 345
             MI GY   G   E+L L + M    V+P+   +V+ + A A L  ++K R +  YI + 
Sbjct: 907  VMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRK 966

Query: 346  GFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLF 405
             F +D +LGT +I M++KCG +ESA  +F  + +K V  W+AMI   G HG   +ALDLF
Sbjct: 967  KFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLF 1026

Query: 406  NKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCR 465
              M R G+ P  IT + +L ACSHAGLV +G R+F+ M  DY +   ++HY C+VD+L R
Sbjct: 1027 PMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGR 1086

Query: 466  TGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVL 525
             G L+EA   I SM    +  +W + L   R H +  + E AA +L+++ P   G Y++L
Sbjct: 1087 AGRLDEALKLIXSMTXEKDEGLWGAFLGACRTHKDVXLAEKAATSLLELQPQNPGHYILL 1146

Query: 526  SNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKL 585
            SNIYA AG+W+ V+++R++M +R  +K PG + IE     H+F VGD +HP++ EI+  L
Sbjct: 1147 SNIYANAGRWEDVAKIRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEML 1206

Query: 586  SEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKN 645
              + NKL+  G+VPDT  VL  + D++ K   L  HSE+LAIAFGLI     +PIRI+KN
Sbjct: 1207 KSLGNKLELVGYVPDTNFVLHDV-DEELKIGILYTHSEKLAIAFGLIATPEHTPIRIIKN 1265

Query: 646  LRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            LRVC DCH+  KL+S I  R IIVRD +RFHHFK G+CSC D+W
Sbjct: 1266 LRVCGDCHTFCKLVSAITGRVIIVRDANRFHHFKEGACSCGDYW 1309



 Score =  346 bits (887), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 192/520 (36%), Positives = 295/520 (56%), Gaps = 13/520 (2%)

Query: 138 IKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDG 197
           + + +Q+H      G   +  V + L+  Y+ +  +D    +FD M  +D VSW+ ++ G
Sbjct: 75  LTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGG 134

Query: 198 YVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNL- 250
           + K G+       F E+      PD   ++   ++        +++ R I + +    L 
Sbjct: 135 FAKVGDYINCFGTFRELIRCGARPDN--YTLPFVIRACRDLKNLQMGRLIHHIVYKFGLD 192

Query: 251 ---VSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETM 307
                  A+++ Y+K  +++ A  LFD M+ RDL+TW  MI GY   G+  E+L L E M
Sbjct: 193 LDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKM 252

Query: 308 LIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSI 367
               V+P+   +V+ + A A L  ++K R +  YI +  F +D +LGT +I MY+KCG +
Sbjct: 253 REEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCV 312

Query: 368 ESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNAC 427
           ESA  +F  + +K V  W+AMI   G HG   +ALDLF  M   GM P  IT   +L AC
Sbjct: 313 ESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLSSGMLPDKITLASLLYAC 372

Query: 428 SHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVI 487
           SHAGLV +G R+F+ M  DY +   ++HY C+VD+L R G L+EA   I+SM +  +  +
Sbjct: 373 SHAGLVEEGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGRLDEALKLIKSMTIEKDEGL 432

Query: 488 WMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547
           W + L   R H +  + E AA +L+++     G YV+LSNIYA AG+W+ V+++R++M +
Sbjct: 433 WGAFLGACRTHKDVVLAEKAATSLLELQSQNPGHYVLLSNIYANAGRWEDVAKIRDLMSQ 492

Query: 548 RGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLC 607
           R  +K PG + IE     H+F VGD +HP++ EI+  L  + NKL+  G+VPDT  VL  
Sbjct: 493 RRLKKTPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLSNKLELVGYVPDTNFVLHD 552

Query: 608 IEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLR 647
           + D++ K   L  HSE+LAIAFGLI     +PIRI+KNLR
Sbjct: 553 V-DEELKIGILYTHSEKLAIAFGLIATPEHTPIRIIKNLR 591



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 113/430 (26%), Positives = 194/430 (45%), Gaps = 76/430 (17%)

Query: 7   QHSSPIHALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDP 66
           + SS  H LQ+  P + + + L       + +Q+HA +    ++ +  ++++L+  Y   
Sbjct: 49  EESSKFHFLQRLNP-KFYISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFY--S 105

Query: 67  HINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLP 126
           +   L  A  +FD +    S V +++++  +            F +L+     PDN+TLP
Sbjct: 106 YYRALDDAYGLFDGMCVRDS-VSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLP 164

Query: 127 CVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK 186
            VI+    L  ++ G+ IH +V+K G   D FV ++LV MY K  EI+  R +FD M ++
Sbjct: 165 FVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQER 224

Query: 187 DLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDR----------------------- 217
           DLV+W  +I GY + G+   ++ LF++M      PD+                       
Sbjct: 225 DLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIID 284

Query: 218 ----------DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVD 267
                     D+   T ++D ++KCG VE AREIF RM  +N++SW+AMI  Y       
Sbjct: 285 DYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAY------- 337

Query: 268 SACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVA 327
                                 GY   GR  +AL+L   ML   +LP+  TL S L A +
Sbjct: 338 ----------------------GYHGQGR--KALDLFPMMLSSGMLPDKITLASLLYACS 373

Query: 328 GLAVLNKG-RWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS-KKKVGHW 385
              ++ +G R+  S         D    T ++ +  + G ++ AL + ++++ +K  G W
Sbjct: 374 HAGLVEEGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGRLDEALKLIKSMTIEKDEGLW 433

Query: 386 TAMIVGLGMH 395
            A +     H
Sbjct: 434 GAFLGACRTH 443



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 108/401 (26%), Positives = 181/401 (45%), Gaps = 75/401 (18%)

Query: 36   ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIK 95
            + +Q+H  +    ++ +  ++++L+  Y   +   L  A  +FD +    S V +++++ 
Sbjct: 753  QVRQVHXQASVHGMLQNLIVANKLVXFY--SYYRALDDAYGLFDGMCVRDS-VSWSVMVG 809

Query: 96   CYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF 155
             +            F +L+     PDN+TLP VI+    L  ++ G+ IH +V+K G   
Sbjct: 810  GFAKVGDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDL 869

Query: 156  DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM- 214
            D FV ++LV MY K  EI+  R +FD M ++DLV+W  +I GY + G    ++ LFD+M 
Sbjct: 870  DHFVCAALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMR 929

Query: 215  -----PDR---------------------------------DLFSWTCLVDGFSKCGKVE 236
                 PD+                                 D+   T ++D  +KCG VE
Sbjct: 930  EEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVE 989

Query: 237  IAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGR 296
             AREIF RM  +N++SW+AMI  Y                             GY   GR
Sbjct: 990  SAREIFDRMEEKNVISWSAMIAAY-----------------------------GYHGQGR 1020

Query: 297  FMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLG-T 355
              +AL+L   ML   +LPN  TLVS L A +   ++ +G    S + ++  V   V   T
Sbjct: 1021 --KALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSXMWEDYSVRXDVKHYT 1078

Query: 356  LLIQMYSKCGSIESALTVFRAIS-KKKVGHWTAMIVGLGMH 395
             ++ +  + G ++ AL +  +++ +K  G W A +     H
Sbjct: 1079 CVVDLLGRAGRLDEALKLIXSMTXEKDEGLWGAFLGACRTH 1119



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/237 (21%), Positives = 105/237 (44%), Gaps = 13/237 (5%)

Query: 323 LSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKV 382
           +SA+     L + R +H+    +G + + V+   LI  YS   +++ A  +F  +  +  
Sbjct: 66  ISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDS 125

Query: 383 GHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNM 442
             W+ M+ G    G        F ++ R G +P   T   V+ AC     +  G R  + 
Sbjct: 126 VSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMG-RLIHH 184

Query: 443 MINDYGIEPTIEHYGC--LVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG- 499
           ++  +G++  ++H+ C  LVD+  +   +E+A+   + M  R + V W  ++ G    G 
Sbjct: 185 IVYKFGLD--LDHFVCAALVDMYVKCREIEDARFLFDKMQER-DLVTWTVMIGGYAECGK 241

Query: 500 -NKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAA--GQWDKVSEVREMMKKRGFRKD 553
            N+ +  +       V PD +    V   ++A A  G   K   + + ++++ F+ D
Sbjct: 242 ANESLVLFEKMREEGVVPDKVAMVTV---VFACAKLGAMHKARIIDDYIQRKKFQLD 295


>gi|125599128|gb|EAZ38704.1| hypothetical protein OsJ_23104 [Oryza sativa Japonica Group]
          Length = 1280

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 202/439 (46%), Positives = 286/439 (65%), Gaps = 4/439 (0%)

Query: 254  NAMINGYMKAGDVDSACELFDDMEIR--DLITWNSMIAGYELNGRFMEALELLETMLIGD 311
            N++++ Y   G  +SA ++FD+M +R  +L++WNSM+  +  NGR  E L +   ML  D
Sbjct: 843  NSLVHLYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVD 902

Query: 312  VLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESAL 371
              P+  T+VS L+A A    L  GR +H Y+ K G V +  +   LI +Y+KCGS+  A 
Sbjct: 903  FAPDGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDAR 962

Query: 372  TVFRAIS-KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHA 430
             +F  +   + V  WT++IVGL  +G   +AL+LF+ M R  + PT IT +GVL ACSH 
Sbjct: 963  RIFEEMGLGRTVVSWTSLIVGLAANGFGKEALELFSLMEREKLVPTEITMVGVLYACSHC 1022

Query: 431  GLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMS 490
            GLV+DG RYF+ M  DYGI P IEH GC+VD+L R G +EEA   I +MP+ PN V+W +
Sbjct: 1023 GLVDDGFRYFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRT 1082

Query: 491  LLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGF 550
            LL     H   ++G+ A   L+++ P   G YV+LSN+YAA G W  V  +R+ M K   
Sbjct: 1083 LLGSCAMHKKLELGKVAWERLVELDPGHSGDYVLLSNLYAAVGMWADVHVLRKTMVKDRV 1142

Query: 551  RKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIED 610
            RK+PG S +E R  ++EFV+GD+SHP++++I+  L+E+  +L+  G++P T+ VL  IE+
Sbjct: 1143 RKNPGHSLVELRNSVYEFVMGDRSHPESEQIYEMLAEIAERLRREGYIPRTSNVLADIEE 1202

Query: 611  QKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVR 670
            + EKE  L  HSERLAIAF L+      PIRI+KNLR+C DCH    L+S +Y+REIIVR
Sbjct: 1203 E-EKETALNYHSERLAIAFALLKSLPGIPIRIIKNLRMCGDCHVAFNLISKVYDREIIVR 1261

Query: 671  DNSRFHHFKNGSCSCKDFW 689
            D SRFHHF+ G+CSCKD+W
Sbjct: 1262 DRSRFHHFQGGACSCKDYW 1280



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 99/376 (26%), Positives = 165/376 (43%), Gaps = 59/376 (15%)

Query: 71   LHYARSIFDRILQHPSLVLY--NLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCV 128
            L YA ++  R+L H  L  +  N +++    + R   AL L      R  LPD  T P +
Sbjct: 754  LRYAVAVLSRLLPHGPLDPFPLNTVLRIAAGSPRPRVALELH---RRRLALPDTHTYPPL 810

Query: 129  IKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD--DK 186
            I+  ARL A++EG+ +H    K GF    FV +SLV +Y   G  +   +VFD M    +
Sbjct: 811  IQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRGR 870

Query: 187  DLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIF 242
            +LVSWN +++ +   G     + +F EM   D     F+   ++   ++ G + + R + 
Sbjct: 871  NLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRRVH 930

Query: 243  YRMPNRNLVS----WNAMINGYMKAGDVDSACELFDDMEI-RDLITWNSMIAGYELNGRF 297
              +    LV      NA+I+ Y K G V+ A  +F++M + R +++W S+I G   NG  
Sbjct: 931  VYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGFG 990

Query: 298  MEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLL 357
             EALEL   M    ++P + T+V  L A                                
Sbjct: 991  KEALELFSLMEREKLVPTEITMVGVLYAC------------------------------- 1019

Query: 358  IQMYSKCGSIESALTVFRAISK-----KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG 412
                S CG ++     F  + +      ++ H   M+  LG  G   +A D    +  M 
Sbjct: 1020 ----SHCGLVDDGFRYFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDY---IITMP 1072

Query: 413  MKPTAITFIGVLNACS 428
            ++P A+ +  +L +C+
Sbjct: 1073 LEPNAVVWRTLLGSCA 1088



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 151/333 (45%), Gaps = 26/333 (7%)

Query: 35   KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRI-LQHPSLVLYNLL 93
            +E + LHA + K   +    + + L+ LY          A  +FD + ++  +LV +N +
Sbjct: 821  REGECLHAEAAKNGFVTLVFVQNSLVHLY--GACGLFESAHKVFDEMPVRGRNLVSWNSM 878

Query: 94   IKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGF 153
            +  +  N R +E LT+F ++L     PD FT+  V+   A  GA+  G+++H  V K+G 
Sbjct: 879  LNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVEKVGL 938

Query: 154  GFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD-DKDLVSWNCLIDGYVKKGEVEVAMKLFD 212
              +  V ++L+ +YAK G ++  RR+F+ M   + +VSW  LI G    G  + A++LF 
Sbjct: 939  VENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGFGKEALELFS 998

Query: 213  EMPDRDLFSWTCLVDGF----SKCGKVEIAREIFYRMPNRNLVS-----WNAMINGYMKA 263
             M    L      + G     S CG V+     F RM     +S        M++   +A
Sbjct: 999  LMEREKLVPTEITMVGVLYACSHCGLVDDGFRYFDRMKEDYGISPRIEHLGCMVDLLGRA 1058

Query: 264  GDVDSACELFDDMEIR-DLITWNSMIAGYELNGRF---MEALELLETMLIGDVLPNDATL 319
            G V+ A +    M +  + + W +++    ++ +      A E L  +  G     D  L
Sbjct: 1059 GRVEEAYDYIITMPLEPNAVVWRTLLGSCAMHKKLELGKVAWERLVELDPGH--SGDYVL 1116

Query: 320  VSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV 352
            +S L A  G+       W   ++++   V D V
Sbjct: 1117 LSNLYAAVGM-------WADVHVLRKTMVKDRV 1142



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 101/230 (43%), Gaps = 8/230 (3%)

Query: 300  ALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQ 359
            ALEL    L    LP+  T    + A A L  L +G  +H+   KNGFV    +   L+ 
Sbjct: 791  ALELHRRRL---ALPDTHTYPPLIQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVH 847

Query: 360  MYSKCGSIESALTVF--RAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA 417
            +Y  CG  ESA  VF    +  + +  W +M+     +G   + L +F +M  +   P  
Sbjct: 848  LYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDG 907

Query: 418  ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIE 477
             T + VL AC+  G +  GRR  ++ +   G+         L+D+  + G + +A+   E
Sbjct: 908  FTIVSVLTACAEFGALALGRR-VHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFE 966

Query: 478  SMPMRPNFVIWMSLLSG--ARNHGNKDIGEYAANNLIKVAPDTIGCYVVL 525
             M +    V W SL+ G  A   G + +  ++     K+ P  I    VL
Sbjct: 967  EMGLGRTVVSWTSLIVGLAANGFGKEALELFSLMEREKLVPTEITMVGVL 1016


>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Vitis vinifera]
          Length = 684

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 224/614 (36%), Positives = 346/614 (56%), Gaps = 11/614 (1%)

Query: 86  SLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIH 145
           S+V +  LI   V N R   AL  F ++    + P++FT PC  K +  L +   GKQ+H
Sbjct: 72  SVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLVGKQVH 131

Query: 146 GLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVE 205
            L  K G   D FV  S   MY+K G  +  R++FD M ++++ +WN  +   V +G  +
Sbjct: 132 ALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEGRYD 191

Query: 206 VAMKLFDEMP----DRDLFSWTCLVDGFSKCGKVEIARE----IFYRMPNRNLVSWNAMI 257
            A+  F E      + +L ++   ++  +    + + R+    +       ++   N +I
Sbjct: 192 DALTAFIEFRHEGWEPNLITFCAFLNACAGASYLRLGRQLHGFVLQSGFEADVSVANGLI 251

Query: 258 NGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDA 317
           + Y K   V  +  +F  +   + ++W SMI  Y  N    +A  +        + P D 
Sbjct: 252 DFYGKCHQVGCSEIIFSGISKPNDVSWCSMIVSYVQNDEEEKACLVFLRARKEGIEPTDF 311

Query: 318 TLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAI 377
            + S LSA AGL+VL  G+ +H+  VK   V +  +G+ L+ MY KCGSIE A   F  +
Sbjct: 312 MVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEM 371

Query: 378 SKKKVGHWTAMIVGLGMHGMATQALDLFNKMC--RMGMKPTAITFIGVLNACSHAGLVND 435
            ++ +  W AMI G    G A  A+ LF++M      + P  +TF+ VL+ACS AG VN 
Sbjct: 372 PERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSVNV 431

Query: 436 GRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGA 495
           G   F  M   YGIEP  EHY C+VD+L R G +E+A   I+ MP+RP   +W +LL  +
Sbjct: 432 GMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGAS 491

Query: 496 RNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPG 555
           +  G  ++G+ AA+NL ++ P   G +V+LSN++AAAG+W++ + VR+ MK  G +K  G
Sbjct: 492 KMFGKSELGKVAADNLFELDPLDSGNHVLLSNMFAAAGRWEEATLVRKEMKDVGIKKGAG 551

Query: 556 SSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKE 615
            S I     +H F   D SH +  EI + L+++R +++AAG++PDT+  L  +E++ EK 
Sbjct: 552 CSWITAGNAVHVFQAKDTSHERNSEIQAMLAKLRGEMEAAGYIPDTSFALFDLEEE-EKA 610

Query: 616 AELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRF 675
            E+  HSE++A+AFGLI++ +  PIRI KNLR+C DCHS  K +SGI  REIIVRDN+ F
Sbjct: 611 MEVWYHSEKIALAFGLISIPAGVPIRITKNLRICGDCHSAIKFISGIVGREIIVRDNNLF 670

Query: 676 HHFKNGSCSCKDFW 689
           H F++  CSC+D+W
Sbjct: 671 HRFRDNQCSCRDYW 684



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 84/320 (26%), Positives = 149/320 (46%), Gaps = 23/320 (7%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +QLH   +++       +++ L+  Y   H   +  +  IF  I   P+ V +  +I  Y
Sbjct: 229 RQLHGFVLQSGFEADVSVANGLIDFYGKCH--QVGCSEIIFSGI-SKPNDVSWCSMIVSY 285

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
           V N    +A  +F       + P +F +  V+   A L  ++ GK +H L  K     + 
Sbjct: 286 VQNDEEEKACLVFLRARKEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNI 345

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP-- 215
           FV S+LV MY K G I+   R FD M +++LV+WN +I GY  +G+ ++A+ LFDEM   
Sbjct: 346 FVGSALVDMYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCG 405

Query: 216 ----DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNA-----MINGYMKAGDV 266
                 +  ++ C++   S+ G V +  EIF  M  R  +   A     +++   +AG V
Sbjct: 406 SHRVAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMV 465

Query: 267 DSACELFDDMEIRDLIT-WNSMIAGYELNGRFMEALELLETMLIGDVL-PNDATLVSALS 324
           + A +    M IR  ++ W +++   ++ G+        + +   D L   +  L+S + 
Sbjct: 466 EQAYQFIKKMPIRPTVSVWGALLGASKMFGKSELGKVAADNLFELDPLDSGNHVLLSNMF 525

Query: 325 AVAGLAVLNKGRWMHSYIVK 344
           A A       GRW  + +V+
Sbjct: 526 AAA-------GRWEEATLVR 538



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 106/240 (44%), Gaps = 2/240 (0%)

Query: 253 WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDV 312
           +N ++N Y K    +SA  L      R ++TW ++IAG   NGRF  AL     M    +
Sbjct: 45  YNHLVNMYSKLDRPNSAQLLLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSI 104

Query: 313 LPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALT 372
            PND T   A  A   L     G+ +H+  VK G + D  +G     MYSK G  E A  
Sbjct: 105 QPNDFTFPCAFKASGSLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARK 164

Query: 373 VFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGL 432
           +F  + ++ +  W A +    + G    AL  F +    G +P  ITF   LNAC+ A  
Sbjct: 165 MFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEFRHEGWEPNLITFCAFLNACAGASY 224

Query: 433 VNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLL 492
           +  GR+    ++   G E  +     L+D   +   +      I S   +PN V W S++
Sbjct: 225 LRLGRQLHGFVLQS-GFEADVSVANGLIDFYGKCHQV-GCSEIIFSGISKPNDVSWCSMI 282


>gi|242079983|ref|XP_002444760.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
 gi|241941110|gb|EES14255.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
          Length = 650

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 246/658 (37%), Positives = 357/658 (54%), Gaps = 47/658 (7%)

Query: 61  SLYVDPHINNL----HYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDR 116
           SL+  P  N L      +R +  +   HPSL +++ L     F         L    L  
Sbjct: 11  SLFKRPPRNRLAATRRSSRPVHTQPPPHPSLAIFSRLCVEGPFPAALALLPDLAAAGLR- 69

Query: 117 FLLPDNFTLPCVIKGAARLGAIKEGKQIHGLV--------FKLGFGFDKFVLSSLVSMYA 168
               D  +L  ++K   R G   +G+ IH  V        +  G G   FV +SLVSMYA
Sbjct: 70  ---ADPVSLTRLVKLCVRHGTAGDGRLIHRHVEAHGQLSHYSGGAGGGIFVSNSLVSMYA 126

Query: 169 KFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKK-GEVEVAMKLFDEM------PDRDLFS 221
           KFG +D   R+FD M ++++V+W  ++       G  E A++    M      P+   FS
Sbjct: 127 KFGLLDDALRLFDRMPERNVVTWTTVVAALANADGRKEEALRFLVAMWRDGVAPNAYTFS 186

Query: 222 ---WTCLVDGF-----SKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELF 273
                C   G      +   KV +  ++F R         +++I+ YMK GD+D    +F
Sbjct: 187 SVLGACGTPGVLAALHASTVKVGLDSDVFVR---------SSLIDAYMKLGDLDGGRRVF 237

Query: 274 DDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLN 333
           D+M  RDL+ WNS+IAG+  +G  + A+EL   M       N  TL S L A  G+ +L 
Sbjct: 238 DEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSANQGTLTSVLRACTGMVMLE 297

Query: 334 KGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLG 393
            GR +H++++K  +  D +L   L+ MY KCGS+E A  +F  + ++ V  W+ MI GL 
Sbjct: 298 AGRQVHAHVLK--YERDLILHNALLDMYCKCGSLEDAEALFHRMPQRDVISWSTMISGLA 355

Query: 394 MHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTI 453
            +G + +AL +F+ M   G+ P  IT +GVL ACSHAGLV DG  YF  M   +GI+P  
Sbjct: 356 QNGKSAEALRVFDLMKSEGVAPNRITMVGVLFACSHAGLVEDGWYYFRSMKKLFGIQPER 415

Query: 454 EHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIK 513
           EH+ C+VD+L R G L+EA   I  M + P+ VIW +LL   R H + ++  YAA  ++K
Sbjct: 416 EHHNCMVDLLGRAGKLDEAVEFIRDMNLEPDAVIWRTLLGACRMHKSGNLAAYAAREILK 475

Query: 514 VAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDK 573
           + PD  G  V+LSN YA   QW    +  + M+ RG +K+PG S IE    +H F+ GD 
Sbjct: 476 LEPDDQGARVLLSNTYADLRQWTDAEKSWKAMRDRGMKKEPGRSWIELEKHVHVFIAGDL 535

Query: 574 SHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVL--LCIEDQKEKEAELENHSERLAIAFGL 631
           SHP +D I  +L+ +  ++ A G+VP T  VL  L IE   +KE  L+ HSE++AIAFG 
Sbjct: 536 SHPCSDTIVQELNRLIGRISALGYVPQTEFVLQDLAIE---QKEDLLKYHSEKMAIAFGT 592

Query: 632 INVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           ++     PIRI+KNLR+C DCH+  KL+S    R II+RD  RFHHF++G+CSC D+W
Sbjct: 593 MHAVGGKPIRIMKNLRICGDCHAFAKLVSKSEGRMIIIRDPVRFHHFQDGACSCGDYW 650


>gi|356522522|ref|XP_003529895.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Glycine max]
          Length = 911

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 223/666 (33%), Positives = 369/666 (55%), Gaps = 16/666 (2%)

Query: 36  ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIK 95
           E +Q+H   ++   + ++ I + ++S+Y     N L  AR++FD    H +L  +N +I 
Sbjct: 250 EGKQIHGYVIRFGRVSNTSICNSIVSMY--SRNNRLELARAVFDSTEDH-NLASWNSIIS 306

Query: 96  CYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF 155
            Y  N   + A  LF ++    + PD  T   ++ G    G+ +        +   GF  
Sbjct: 307 SYAVNGCLNGAWDLFREMESSSIKPDIITWNSLLSGHLLQGSYENVLTNIRSLQSAGFKP 366

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRV----FDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLF 211
           D   ++S +    + G  +LG+ +      +  + D+     L+D Y+K   +E A  +F
Sbjct: 367 DSCSITSALQAVIELGYFNLGKEIHGYIMRSKLEYDVYVCTSLVDMYIKNDCLEKAEVVF 426

Query: 212 DEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR----NLVSWNAMINGYMKAGDVD 267
               ++++ +W  L+ G++  G  + A ++  +M       +LV+WN++++GY  +G  +
Sbjct: 427 HHTKNKNICAWNSLISGYTYKGLFDNAEKLLIQMKEEGIKADLVTWNSLVSGYSMSGCSE 486

Query: 268 SACELFDDME----IRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSAL 323
            A  + + ++      ++++W +MI+G   N  + +AL+    M   +V PN  T+ + L
Sbjct: 487 EALAVINRIKSLGLTPNVVSWTAMISGCCQNENYTDALQFFSQMQEENVKPNSTTISTLL 546

Query: 324 SAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVG 383
            A AG ++L KG  +H + +K+GFV D  + T LI MYSK G ++ A  VFR I +K + 
Sbjct: 547 RACAGPSLLKKGEEIHCFSMKHGFVDDIYIATALIDMYSKGGKLKVAHEVFRNIKEKTLP 606

Query: 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMM 443
            W  M++G  ++G   +   LF+ MC+ G++P AITF  +L+ C ++GLV DG +YF+ M
Sbjct: 607 CWNCMMMGYAIYGHGEEVFTLFDNMCKTGIRPDAITFTALLSGCKNSGLVMDGWKYFDSM 666

Query: 444 INDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDI 503
             DY I PTIEHY C+VD+L + G+L+EA   I +MP + +  IW ++L+  R H +  I
Sbjct: 667 KTDYSINPTIEHYSCMVDLLGKAGFLDEALDFIHAMPQKADASIWGAVLAACRLHKDIKI 726

Query: 504 GEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRG 563
            E AA NL ++ P     YV++ NIY+   +W  V  ++E M   G +     S I+ R 
Sbjct: 727 AEIAARNLFRLEPYNSANYVLMMNIYSTFERWGDVERLKESMTAMGVKIPNVWSWIQVRQ 786

Query: 564 VLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSE 623
            +H F    KSHP+  EI+  L ++ +++K  G+VPDT  V   I+D  EKE  L +H+E
Sbjct: 787 TIHVFSTEGKSHPEEGEIYFDLYQLISEIKKLGYVPDTNCVHQNIDDS-EKEKVLLSHTE 845

Query: 624 RLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSC 683
           +LA+ +GL+ +K  +PIR+VKN R+C DCH+  K +S   NREI +RD  RFHHF NG C
Sbjct: 846 KLAMTYGLMKIKGGTPIRVVKNTRICQDCHTAAKYISLARNREIFLRDGGRFHHFMNGEC 905

Query: 684 SCKDFW 689
           SC D W
Sbjct: 906 SCNDRW 911



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 131/545 (24%), Positives = 232/545 (42%), Gaps = 80/545 (14%)

Query: 88  VLYNLLIKCYV-FNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHG 146
           +L+N  ++ +  F   SHE L +F +L D+ +  D+  L  V+K    L  +  G ++H 
Sbjct: 96  LLWNSFLEEFASFGGDSHEILEVFKELHDKGVKFDSKALTVVLKICLALMELWLGMEVHA 155

Query: 147 LVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEV 206
            + K GF  D  +  +L+++Y K   ID   +VFD    ++   WN ++   ++    E 
Sbjct: 156 CLLKRGFQVDVHLSCALINLYEKCLGIDRANQVFDETPLQEDFLWNTIVMANLRSERWED 215

Query: 207 AMKLFDEMPD-------------------------------------RDLFSWTC--LVD 227
           A++L   M                                       R   +  C  +V 
Sbjct: 216 ALELSRRMQSASAKATDGTIVKLLQACGKLRALNEGKQIHGYVIRFGRVSNTSICNSIVS 275

Query: 228 GFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIR----DLIT 283
            +S+  ++E+AR +F    + NL SWN++I+ Y   G ++ A +LF +ME      D+IT
Sbjct: 276 MYSRNNRLELARAVFDSTEDHNLASWNSIISSYAVNGCLNGAWDLFREMESSSIKPDIIT 335

Query: 284 WNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIV 343
           WNS+++G+ L G +   L  + ++      P+  ++ SAL AV  L   N G+ +H YI+
Sbjct: 336 WNSLLSGHLLQGSYENVLTNIRSLQSAGFKPDSCSITSALQAVIELGYFNLGKEIHGYIM 395

Query: 344 KNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALD 403
           ++    D  + T L+ MY K   +E A  VF     K +  W ++I G    G+   A  
Sbjct: 396 RSKLEYDVYVCTSLVDMYIKNDCLEKAEVVFHHTKNKNICAWNSLISGYTYKGLFDNAEK 455

Query: 404 LFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDIL 463
           L  +M   G+K   +T+  +++  S +G   +     N  I   G+ P +  +  ++   
Sbjct: 456 LLIQMKEEGIKADLVTWNSLVSGYSMSGCSEEALAVIN-RIKSLGLTPNVVSWTAMISGC 514

Query: 464 CRTGYLEEAK---STIESMPMRPNFVIWMSLLSG----------------ARNHGNKD-- 502
           C+     +A    S ++   ++PN     +LL                  +  HG  D  
Sbjct: 515 CQNENYTDALQFFSQMQEENVKPNSTTISTLLRACAGPSLLKKGEEIHCFSMKHGFVDDI 574

Query: 503 ------IGEYAANNLIKVAPD--------TIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548
                 I  Y+    +KVA +        T+ C+  +   YA  G  ++V  + + M K 
Sbjct: 575 YIATALIDMYSKGGKLKVAHEVFRNIKEKTLPCWNCMMMGYAIYGHGEEVFTLFDNMCKT 634

Query: 549 GFRKD 553
           G R D
Sbjct: 635 GIRPD 639



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 128/541 (23%), Positives = 216/541 (39%), Gaps = 118/541 (21%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYV 98
           ++HA  +K        +S  L++LY       +  A  +FD         L+N ++   +
Sbjct: 152 EVHACLLKRGFQVDVHLSCALINLY--EKCLGIDRANQVFDETPLQEDF-LWNTIVMANL 208

Query: 99  FNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKF 158
            ++R  +AL L   +        + T+  +++   +L A+ EGKQIHG V + G   +  
Sbjct: 209 RSERWEDALELSRRMQSASAKATDGTIVKLLQACGKLRALNEGKQIHGYVIRFGRVSNTS 268

Query: 159 VLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR- 217
           + +S+VSMY++   ++L R VFD+ +D +L SWN +I  Y   G +  A  LF EM    
Sbjct: 269 ICNSIVSMYSRNNRLELARAVFDSTEDHNLASWNSIISSYAVNGCLNGAWDLFREMESSS 328

Query: 218 ---DLFSWTCLVDGFSKCGKVE-----------------------------------IAR 239
              D+ +W  L+ G    G  E                                   + +
Sbjct: 329 IKPDIITWNSLLSGHLLQGSYENVLTNIRSLQSAGFKPDSCSITSALQAVIELGYFNLGK 388

Query: 240 EIF-YRMPNR---NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNG 295
           EI  Y M ++   ++    ++++ Y+K   ++ A  +F   + +++  WNS+I+GY   G
Sbjct: 389 EIHGYIMRSKLEYDVYVCTSLVDMYIKNDCLEKAEVVFHHTKNKNICAWNSLISGYTYKG 448

Query: 296 RFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGT 355
            F  A +LL  M                                    + G   D V   
Sbjct: 449 LFDNAEKLLIQM-----------------------------------KEEGIKADLVTWN 473

Query: 356 LLIQMYSKCGSIESALTVFRAISK----KKVGHWTAMIVGLGMHGMATQALDLFNKMCRM 411
            L+  YS  G  E AL V   I        V  WTAMI G   +   T AL  F++M   
Sbjct: 474 SLVSGYSMSGCSEEALAVINRIKSLGLTPNVVSWTAMISGCCQNENYTDALQFFSQMQEE 533

Query: 412 GMKPTAITFIGVLNACSHAGLVNDGRRY--FNM---MINDYGI----------------- 449
            +KP + T   +L AC+   L+  G     F+M    ++D  I                 
Sbjct: 534 NVKPNSTTISTLLRACAGPSLLKKGEEIHCFSMKHGFVDDIYIATALIDMYSKGGKLKVA 593

Query: 450 --------EPTIEHYGCLVDILCRTGYLEEAKSTIESM---PMRPNFVIWMSLLSGARNH 498
                   E T+  + C++      G+ EE  +  ++M    +RP+ + + +LLSG +N 
Sbjct: 594 HEVFRNIKEKTLPCWNCMMMGYAIYGHGEEVFTLFDNMCKTGIRPDAITFTALLSGCKNS 653

Query: 499 G 499
           G
Sbjct: 654 G 654



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 93/387 (24%), Positives = 167/387 (43%), Gaps = 44/387 (11%)

Query: 162 SLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVK-KGEVEVAMKLFDEMPDRDL- 219
           S++  Y +FG+ +   +VF     ++ + WN  ++ +    G+    +++F E+ D+ + 
Sbjct: 69  SMMRNYLEFGDFESATKVFFVGFARNYLLWNSFLEEFASFGGDSHEILEVFKELHDKGVK 128

Query: 220 FSWTCLVDGFSKCGKV-------EIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACEL 272
           F    L      C  +       E+   +  R    ++    A+IN Y K   +D A ++
Sbjct: 129 FDSKALTVVLKICLALMELWLGMEVHACLLKRGFQVDVHLSCALINLYEKCLGIDRANQV 188

Query: 273 FDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVL 332
           FD+  +++   WN+++     + R+ +ALEL   M        D T+V  L A   L  L
Sbjct: 189 FDETPLQEDFLWNTIVMANLRSERWEDALELSRRMQSASAKATDGTIVKLLQACGKLRAL 248

Query: 333 NKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGL 392
           N+G+ +H Y+++ G V +  +   ++ MYS+   +E A  VF +     +  W ++I   
Sbjct: 249 NEGKQIHGYVIRFGRVSNTSICNSIVSMYSRNNRLELARAVFDSTEDHNLASWNSIISSY 308

Query: 393 GMHGMATQALDLFNKMCRMGMKPTAITFIGVLN----------------ACSHAGLVNDG 436
            ++G    A DLF +M    +KP  IT+  +L+                +   AG   D 
Sbjct: 309 AVNGCLNGAWDLFREMESSSIKPDIITWNSLLSGHLLQGSYENVLTNIRSLQSAGFKPDS 368

Query: 437 RR------------YFNM--MINDYGIEPTIEH--YGC--LVDILCRTGYLEEAKSTIES 478
                         YFN+   I+ Y +   +E+  Y C  LVD+  +   LE+A+     
Sbjct: 369 CSITSALQAVIELGYFNLGKEIHGYIMRSKLEYDVYVCTSLVDMYIKNDCLEKAEVVFHH 428

Query: 479 MPMRPNFVIWMSLLSGARNHGNKDIGE 505
              + N   W SL+SG    G  D  E
Sbjct: 429 TKNK-NICAWNSLISGYTYKGLFDNAE 454


>gi|356526561|ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 243/663 (36%), Positives = 367/663 (55%), Gaps = 39/663 (5%)

Query: 46  KTNLIYHSGISSRLLSLYV--DPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRS 103
           +++L Y S +SSR+   +V  +P  N ++   S  ++++Q  SL        C   N + 
Sbjct: 16  QSHLCYTSHVSSRVPVSFVSLNPSANLINDINSNNNQLIQ--SL--------CKGGNLK- 64

Query: 104 HEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSL 163
            +AL L C   +    P   T   +I   A+  ++  G  +H  +   GF  D F+ + L
Sbjct: 65  -QALHLLCCEPN----PTQQTFEHLIYSCAQKNSLSYGLDVHRCLVDSGFDQDPFLATKL 119

Query: 164 VSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM----PDRDL 219
           ++MY + G ID   +VFD   ++ +  WN L       G  +  + L+ +M       D 
Sbjct: 120 INMYYELGSIDRALKVFDETRERTIYVWNALFRALAMVGHGKELLDLYIQMNWIGTPSDR 179

Query: 220 FSWT-----CLVDGFSKC----GKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSAC 270
           F++T     C+V   S C    GK EI   I       N+     +++ Y K G V  A 
Sbjct: 180 FTYTYVLKACVVSELSVCPLRKGK-EIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYAN 238

Query: 271 ELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIG--DVLPNDATLVSALSAVAG 328
            +F  M  ++ ++W++MIA +  N   M+ALEL + M+    + +PN  T+V+ L A AG
Sbjct: 239 SVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMFEACNSVPNSVTMVNMLQACAG 298

Query: 329 LAVLNKGRWMHSYIVKNGFVVDGVLGTL--LIQMYSKCGSIESALTVFRAISKKKVGHWT 386
           LA L +G+ +H YI++    +D +L  L  LI MY +CG +     VF  + K+ V  W 
Sbjct: 299 LAALEQGKLIHGYILRRQ--LDSILPVLNALITMYGRCGEVLMGQRVFDNMKKRDVVSWN 356

Query: 387 AMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIND 446
           ++I   GMHG   +A+ +F  M   G+ P+ I+FI VL ACSHAGLV +G+  F  M++ 
Sbjct: 357 SLISIYGMHGFGKKAIQIFENMIHQGVSPSYISFITVLGACSHAGLVEEGKILFESMLSK 416

Query: 447 YGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEY 506
           Y I P +EHY C+VD+L R   L EA   IE M   P   +W SLL   R H N ++ E 
Sbjct: 417 YRIHPGMEHYACMVDLLGRANRLGEAIKLIEDMHFEPGPTVWGSLLGSCRIHCNVELAER 476

Query: 507 AANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLH 566
           A+  L ++ P   G YV+L++IYA A  W +   V ++++ RG +K PG S IE +  ++
Sbjct: 477 ASTVLFELEPRNAGNYVLLADIYAEAKLWSEAKSVMKLLEARGLQKLPGCSWIEVKRKVY 536

Query: 567 EFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLA 626
            FV  D+ +PQ +EIH+ L ++ N++KA G+VP T  VL  + D++EKE  +  HSE+LA
Sbjct: 537 SFVSVDEHNPQIEEIHALLVKLSNEMKAQGYVPQTNVVLYDL-DEEEKERIVLGHSEKLA 595

Query: 627 IAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCK 686
           +AFGLIN      IRI KNLR+C DCH+VTK +S   NREI+VRD +RFHHF++G CSC 
Sbjct: 596 VAFGLINTAKGETIRIRKNLRLCEDCHAVTKFISKFANREILVRDVNRFHHFRDGVCSCG 655

Query: 687 DFW 689
           D+W
Sbjct: 656 DYW 658


>gi|224141409|ref|XP_002324065.1| predicted protein [Populus trichocarpa]
 gi|222867067|gb|EEF04198.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 220/633 (34%), Positives = 362/633 (57%), Gaps = 15/633 (2%)

Query: 68  INNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRF-LLPDNFTLP 126
           +N +  A ++FDR+ +  ++V ++ L+  Y+ N  S + + L  D++    + P+ + L 
Sbjct: 79  VNQVSIAHNLFDRMPER-NVVSWSALMTGYLLNGFSLKVIRLLKDMISEGNVSPNEYILA 137

Query: 127 CVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK 186
             I      G ++EG+Q HGL+ K GF F  +V ++LVSMY+K   +     V++ +   
Sbjct: 138 IAISSCCDRGRVEEGRQCHGLLLKTGFSFHNYVRNALVSMYSKCSIVQDAMGVWNEVPVN 197

Query: 187 DLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSW--TCLVDGFSKCGKVEIAR---EI 241
           D+V++N ++   V+ G +   +++   M    +  W     V+ FS C  ++  R    +
Sbjct: 198 DIVAYNSILSSLVENGYLREGLEVLRSMVSESV-KWDKVTFVNAFSLCASLKDLRLGLHV 256

Query: 242 FYRMPNRNL-----VSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGR 296
             +M   ++     VS +A+IN Y K G    A  +FD ++ R+++ W +++A    NG 
Sbjct: 257 HGKMLTSDVECDAYVS-SAIINMYGKCGKSLMARGVFDGLQSRNVVLWTAVMASCFQNGC 315

Query: 297 FMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTL 356
           F EAL L   M   +V  N+ T    L+A AGL+    G  +H +  K+GF    ++G  
Sbjct: 316 FEEALNLFSKMEQENVKSNEFTYAVLLNACAGLSARRNGSLLHGHSEKSGFKHHVMVGNA 375

Query: 357 LIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT 416
           LI MY+K G IE+A  VF  +  + +  W AMI G   HG+  +AL +F  M      P 
Sbjct: 376 LINMYAKSGDIEAAKKVFSDMMHRDIITWNAMICGFSHHGLGKKALLVFQDMLAAEEHPN 435

Query: 417 AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTI 476
            +TF GVL+AC H GLV +G  Y + ++  +G++P +EHY C+V +L +TG L EA++ +
Sbjct: 436 YVTFTGVLSACGHLGLVQEGFYYLHHLMKQFGVQPGLEHYTCIVSLLSKTGQLNEARNFM 495

Query: 477 ESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWD 536
            + P++ + V W +LL+    H N  +G + A  ++++ P+ +G Y +LSNIYA   +WD
Sbjct: 496 RTAPVKWDVVAWRTLLNACHVHQNYGLGRWVAEFVLEMDPNDVGTYTLLSNIYAKEKRWD 555

Query: 537 KVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAG 596
            V +VR++M+ +  +K+PG S IE   V H F   D  HP   + + K+ E+   +K  G
Sbjct: 556 GVVKVRKLMRDKKIKKEPGVSWIEIGNVTHIFTSEDNKHPDYGQTYQKVKELLAMIKPLG 615

Query: 597 HVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVT 656
           + PD   VL  +ED+ +KE  L  HSE+LAIA+GL+ + S + I ++KNLR+C+DCHS  
Sbjct: 616 YTPDIGAVLHDVEDE-QKEYYLSYHSEKLAIAYGLLKLPSEASILVIKNLRICDDCHSAV 674

Query: 657 KLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           +L+S + NR I+VRD +RFHHF++G CSC D+W
Sbjct: 675 RLISKVTNRVIVVRDANRFHHFRDGRCSCLDYW 707


>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1134

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 242/669 (36%), Positives = 382/669 (57%), Gaps = 20/669 (2%)

Query: 35   KETQQLHALSVKTNLI-YHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLL 93
            ++ Q++HA   ++ L+     I + L+++Y       +  A S+F +++     V +N +
Sbjct: 472  RKGQEVHAYLFRSGLVDARISIGNALVNMY--GKCTAIDNACSVF-QLMPSKDTVSWNSM 528

Query: 94   IKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGF 153
            I     N+R  EA++ F  +    ++P NF++   +   + LG +  G+QIHG  FK G 
Sbjct: 529  ISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTLGRQIHGEGFKWGL 588

Query: 154  GFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVK-KGEVEVAMKLFD 212
              D  V ++L+++YA+   I+  ++VF  M + D VSWN  I    K +  V  A+K F 
Sbjct: 589  DLDVSVSNALLTLYAETDSINECQKVFFQMPEYDQVSWNSFIGALAKYEASVLQALKYFL 648

Query: 213  EM------PDRDLF-SWTCLVDGFSKCGKVEIAREIF--YRMPNRNLVSWNAMINGYMKA 263
            EM      P+R  F +    V  FS  G       +   Y + + N +  NA++  Y K 
Sbjct: 649  EMMQAGWRPNRVTFINILAAVSSFSVLGLGHQIHALILKYSVADDNAIE-NALLAFYGKC 707

Query: 264  GDVDSACELFDDM-EIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSA 322
              ++    +F  M E RD ++WNSMI+GY  +G   +A++L+  M+      +  T  + 
Sbjct: 708  EQMEDCEIIFSRMSERRDEVSWNSMISGYLHSGILHKAMDLVWPMMQRGQKLDGFTFATV 767

Query: 323  LSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKV 382
            LSA A +A L +G  +H+  V+     D V+G+ L+ MY+KCG I+ A   F  +  + +
Sbjct: 768  LSACASVATLERGMEVHACAVRACLESDVVVGSALVDMYAKCGKIDYASRFFELMPVRNI 827

Query: 383  GHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNM 442
              W +MI G   HG   +AL +F +M + G  P  +TF+GVL+ACSH GLV++G ++F  
Sbjct: 828  YSWNSMISGYARHGHGQKALKIFTRMKQHGQSPDHVTFVGVLSACSHVGLVDEGYKHFKS 887

Query: 443  MINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGA--RNHGN 500
            M   YG+ P IEH+ C+VD+L R G +++ +  I++MPM PN +IW ++L      N  N
Sbjct: 888  MGEVYGLSPRIEHFSCMVDLLGRAGDVKKIEDFIKTMPMDPNILIWRTVLGACCRANGRN 947

Query: 501  KDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIE 560
             ++G+ AA  LI++ P     YV+LSN++AA G W+ V E R  M+K   +KD G S + 
Sbjct: 948  TELGQRAAKMLIELEPQNAVNYVLLSNMHAAGGNWEDVVEARLAMRKAAVKKDAGCSWVN 1007

Query: 561  HRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELEN 620
             +  +H FV GD++HP+ ++I+ KL E+ NK++ AG+VP+T   L    + + KE  L  
Sbjct: 1008 MKDGVHLFVAGDQTHPEKEKIYEKLKELMNKIRDAGYVPETKYALY-DLELENKEELLSY 1066

Query: 621  HSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKN 680
            HSE+LAIAF ++  KS  PIRI+KNLRVC DCH+  K +S I  R+II+RD++RFHHF  
Sbjct: 1067 HSEKLAIAF-VLTRKSELPIRIMKNLRVCGDCHTAFKYISKIVGRQIILRDSNRFHHFGG 1125

Query: 681  GSCSCKDFW 689
            G CSC D+W
Sbjct: 1126 GMCSCGDYW 1134



 Score =  175 bits (444), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 142/499 (28%), Positives = 241/499 (48%), Gaps = 33/499 (6%)

Query: 6   LQHSSPIHALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVD 65
           L+H +  H+  Q L S    +  K SS+  +   LH    KT         + L+++YV 
Sbjct: 130 LRHYTFSHSQLQQLDSEF--DRYKTSSSLYDANHLHLQLYKTGFTDDVFFCNTLINIYV- 186

Query: 66  PHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTL 125
             I NL  AR +FD + Q  +LV ++ LI  Y  N+   EA +LF  ++   LLP++F +
Sbjct: 187 -RIGNLVSARKLFDEMPQ-KNLVSWSCLISGYTQNRMPDEACSLFKGVISSGLLPNHFAV 244

Query: 126 PCVIKGAARLGA--IKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKF-GEIDLGRRVFDA 182
              ++   + G+  IK G QIH  + KL    D  + + L+SMY+   G ID   RVFD 
Sbjct: 245 GSALRACQQCGSTGIKLGMQIHAFICKLPCVSDMILSNVLMSMYSDCSGSIDDAHRVFDE 304

Query: 183 MDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP-----------DRDLFSWTCLVDGFSK 231
           +  ++ V+WN +I  Y ++G+   A KLF  M            +  L S        + 
Sbjct: 305 IKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGVELNLRPNEYTLCSLVTAACSLAD 364

Query: 232 CGKVEIAREIFYRMPN----RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSM 287
           CG V +  ++  R+      R+L   +A++NG+ + G +D A  +F  M  R+ +T N +
Sbjct: 365 CGLV-LLEQMLTRIEKSGFLRDLYVGSALVNGFARYGLMDCAKMIFKQMYDRNAVTMNGL 423

Query: 288 IAGYELNGRFMEALELLETMLIGDVLP-NDATLVSALSAVAGLAVLN----KGRWMHSYI 342
           + G     +  EA ++ + M   D++  N  +LV  LS     + L     KG+ +H+Y+
Sbjct: 424 MVGLARQHQGEEAAKVFKEM--KDLVEINSESLVVLLSTFTEFSNLKEGKRKGQEVHAYL 481

Query: 343 VKNGFVVDGV-LGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQA 401
            ++G V   + +G  L+ MY KC +I++A +VF+ +  K    W +MI GL  +    +A
Sbjct: 482 FRSGLVDARISIGNALVNMYGKCTAIDNACSVFQLMPSKDTVSWNSMISGLDHNERFEEA 541

Query: 402 LDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVD 461
           +  F+ M R GM P+  + I  L++CS  G +  GR+        +G++  +     L+ 
Sbjct: 542 VSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTLGRQIHGEGFK-WGLDLDVSVSNALLT 600

Query: 462 ILCRTGYLEEAKSTIESMP 480
           +   T  + E +     MP
Sbjct: 601 LYAETDSINECQKVFFQMP 619



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/382 (24%), Positives = 186/382 (48%), Gaps = 29/382 (7%)

Query: 137 AIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLID 196
           ++ +   +H  ++K GF  D F  ++L+++Y + G +   R++FD M  K+LVSW+CLI 
Sbjct: 155 SLYDANHLHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLIS 214

Query: 197 GYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIA-----REIFYRMPN 247
           GY +    + A  LF  +    L    F+    +    +CG   I           ++P 
Sbjct: 215 GYTQNRMPDEACSLFKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPC 274

Query: 248 -RNLVSWNAMINGYMK-AGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLE 305
             +++  N +++ Y   +G +D A  +FD+++ R+ +TWNS+I+ Y   G  + A +L  
Sbjct: 275 VSDMILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFS 334

Query: 306 TMLIGDV----LPNDATLVSALSAV-----AGLAVLNKGRWMHSYIVKNGFVVDGVLGTL 356
            M +  V     PN+ TL S ++A       GL +L +   M + I K+GF+ D  +G+ 
Sbjct: 335 VMQMEGVELNLRPNEYTLCSLVTAACSLADCGLVLLEQ---MLTRIEKSGFLRDLYVGSA 391

Query: 357 LIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT 416
           L+  +++ G ++ A  +F+ +  +       ++VGL       +A  +F +M  + ++  
Sbjct: 392 LVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMKDL-VEIN 450

Query: 417 AITFIGVLNACSHAGLVNDGRR----YFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEA 472
           + + + +L+  +    + +G+R        +     ++  I     LV++  +   ++ A
Sbjct: 451 SESLVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNA 510

Query: 473 KSTIESMPMRPNFVIWMSLLSG 494
            S  + MP + + V W S++SG
Sbjct: 511 CSVFQLMPSK-DTVSWNSMISG 531


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 214/557 (38%), Positives = 325/557 (58%), Gaps = 11/557 (1%)

Query: 142 KQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKK 201
           K+IHG  F+ GF  D+ V ++ V+ YAK   +D   RVF  M+ K + SWN LI  + + 
Sbjct: 421 KEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQN 480

Query: 202 GEVEVAMKLF----DEMPDRDLFS-----WTCLVDGFSKCGKVEIAREIFYRMPNRNLVS 252
           G    ++ LF    D   D D F+       C    F +CGK EI   +       +   
Sbjct: 481 GFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGK-EIHGFMLRNGLELDEFI 539

Query: 253 WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDV 312
             ++++ Y++   +     +FD ME + L+ WN MI G+  N    EAL+    ML G +
Sbjct: 540 GISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQMLSGGI 599

Query: 313 LPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALT 372
            P +  +   L A + ++ L  G+ +HS+ +K     D  +   LI MY+KCG +E +  
Sbjct: 600 KPQEIAVTGVLGACSQVSALRLGKEVHSFALKAHLSEDAFVTCALIDMYAKCGCMEQSQN 659

Query: 373 VFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGL 432
           +F  +++K    W  +I G G+HG   +A++LF  M   G +P + TF+GVL AC+HAGL
Sbjct: 660 IFDRVNEKDEAVWNVIIAGYGIHGHGLKAIELFELMQNKGGRPDSFTFLGVLIACNHAGL 719

Query: 433 VNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLL 492
           V +G +Y   M N YG++P +EHY C+VD+L R G L EA   +  MP  P+  IW SLL
Sbjct: 720 VTEGLKYLGQMQNLYGVKPKLEHYACVVDMLGRAGQLTEALKLVNEMPDEPDSGIWSSLL 779

Query: 493 SGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRK 552
           S  RN+G+ +IGE  +  L+++ P+    YV+LSN+YA  G+WD+V +VR+ MK+ G  K
Sbjct: 780 SSCRNYGDLEIGEEVSKKLLELEPNKAENYVLLSNLYAGLGKWDEVRKVRQRMKENGLHK 839

Query: 553 DPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQK 612
           D G S IE  G+++ F+V D S  ++ +I     ++  K+   G+ PDT+ VL  +E++ 
Sbjct: 840 DAGCSWIEIGGMVYRFLVSDGSLSESKKIQQTWIKLEKKISKIGYKPDTSCVLHELEEEG 899

Query: 613 EKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDN 672
           + +  L++HSE+LAI+FGL+N    + +R+ KNLR+C DCH+  KL+S +  R+IIVRDN
Sbjct: 900 KIKI-LKSHSEKLAISFGLLNTAKGTTLRVCKNLRICVDCHNAIKLVSKVVKRDIIVRDN 958

Query: 673 SRFHHFKNGSCSCKDFW 689
            RFHHFKNG C+C DFW
Sbjct: 959 KRFHHFKNGLCTCGDFW 975



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 126/475 (26%), Positives = 231/475 (48%), Gaps = 17/475 (3%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           + +HAL++K      + + + L+++Y       +  A  +F+  +++ +LV +N ++   
Sbjct: 215 EAVHALALKAGGFSDAFVGNALIAMY--GKCGFVESAVKVFE-TMRNRNLVSWNSVMYAC 271

Query: 98  VFNQRSHEALTLFCDLL---DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
             N    E   +F  LL   +  L+PD  T+  VI   A +G ++ G  +HGL FKLG  
Sbjct: 272 SENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGIT 331

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
            +  V +SLV MY+K G +   R +FD    K++VSWN +I GY K+G+     +L  EM
Sbjct: 332 EEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEM 391

Query: 215 --PDRDLFSWTCLVDGFSKCGK-------VEIAREIFYRMPNRNLVSWNAMINGYMKAGD 265
              ++   +   +++    C          EI    F     ++ +  NA +  Y K   
Sbjct: 392 QREEKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAKCSS 451

Query: 266 VDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSA 325
           +D A  +F  ME + + +WN++I  +  NG   ++L+L   M+   + P+  T+ S L A
Sbjct: 452 LDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLA 511

Query: 326 VAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHW 385
            A L  L  G+ +H ++++NG  +D  +G  L+ +Y +C S+     +F  +  K +  W
Sbjct: 512 CARLKFLRCGKEIHGFMLRNGLELDEFIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCW 571

Query: 386 TAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN 445
             MI G   + +  +ALD F +M   G+KP  I   GVL ACS    +  G+   +  + 
Sbjct: 572 NVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSFALK 631

Query: 446 DYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGN 500
            +  E        L+D+  + G +E++++  + +  +    +W  +++G   HG+
Sbjct: 632 AHLSEDAFVTCA-LIDMYAKCGCMEQSQNIFDRVNEKDE-AVWNVIIAGYGIHGH 684



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 128/457 (28%), Positives = 206/457 (45%), Gaps = 78/457 (17%)

Query: 38  QQLHAL-SVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKC 96
           +++HAL S    L     +S+R++++Y      +   +R +FD   +   L LYN L+  
Sbjct: 112 RKVHALVSASHKLRNDVVLSTRIIAMY--SACGSPSDSRGVFDAA-KEKDLFLYNALLSG 168

Query: 97  YVFNQRSHEALTLFCDLLDRF-LLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF 155
           Y  N    +A++LF +LL    L PDNFTLPCV K  A +  ++ G+ +H L  K G   
Sbjct: 169 YSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGFS 228

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLI-------------------- 195
           D FV ++L++MY K G ++   +VF+ M +++LVSWN ++                    
Sbjct: 229 DAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLL 288

Query: 196 ----DGYVKK--------------GEVEVAMKL----FDEMPDRDLFSWTCLVDGFSKCG 233
               +G V                GEV + M +    F      ++     LVD +SKCG
Sbjct: 289 ISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCG 348

Query: 234 KVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYEL 293
            +  AR +F     +N+VSWN +I GY K GD     EL  +M+  +             
Sbjct: 349 YLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREE------------- 395

Query: 294 NGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVL 353
                             V  N+ T+++ L A +G   L   + +H Y  ++GF+ D ++
Sbjct: 396 -----------------KVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFRHGFLKDELV 438

Query: 354 GTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGM 413
               +  Y+KC S++ A  VF  +  K V  W A+I     +G   ++LDLF  M   GM
Sbjct: 439 ANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGM 498

Query: 414 KPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIE 450
            P   T   +L AC+    +  G+     M+ + G+E
Sbjct: 499 DPDRFTIGSLLLACARLKFLRCGKEIHGFMLRN-GLE 534


>gi|302804548|ref|XP_002984026.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
 gi|300148378|gb|EFJ15038.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
          Length = 745

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 224/628 (35%), Positives = 358/628 (57%), Gaps = 10/628 (1%)

Query: 71  LHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIK 130
           L  A S+F  +     ++    +I  YV + ++  AL  +  +  + L PD FT   ++ 
Sbjct: 119 LEEAESVFRSMGAMRDIISVTAMIGAYVRHGKNDLALDTYWKMRSQGLEPDAFTYAAILG 178

Query: 131 GAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVS 190
             +    + +GK IH  + +     +  V ++L++MYAK G +   + +F  MD KD+VS
Sbjct: 179 ACSSPDFLLDGKHIHKHILESKHFGNISVRNALITMYAKCGSLKDSKSLFLTMDVKDVVS 238

Query: 191 WNCLIDGYVKKGEVEVAMKLFDEM----PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMP 246
           WN +I  Y   G  + A  LF  M       D+++++ ++   +   ++E  R +  R+ 
Sbjct: 239 WNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFSSILGACASPKRLEDGRMLHVRIT 298

Query: 247 ----NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALE 302
               +R+    N +I+ + + G ++SA   F  +E ++L  WN+M+A Y    +  +AL 
Sbjct: 299 ARGFDRDFAMQNNLISMFTRCGSLESARRYFYSIEKKELGAWNTMLAAYAQFDKGKDALF 358

Query: 303 LLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYS 362
           L + ML+    P+  T  S + + A L  L +G+++H      GF  D +LGT L+ MY+
Sbjct: 359 LYKNMLLEGFTPDRFTFSSVVDSCASLGALREGKFIHECSTSCGFEKDVILGTALVNMYA 418

Query: 363 KCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIG 422
           KCGS+  A   F  IS K V  W+AMI     HG A +AL+L + M   G+    +T   
Sbjct: 419 KCGSLADAKKSFDGISNKDVVSWSAMIAASAQHGHAEEALELSHLMNLQGIAQNEVTASS 478

Query: 423 VLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMR 482
           VL+ACSH G + +G  YF  +  D+GIE   E+    +D+L R G+L+EA+  + +MP +
Sbjct: 479 VLHACSHGGRLYEGIDYFMGLSQDFGIERDEENTVGFIDLLGRAGWLKEAEHVLHTMPFK 538

Query: 483 PNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVR 542
            +FV  ++LL G + HG+   G+     ++ + P+  G YV+L+N+YAAAG+WD V+++R
Sbjct: 539 VSFVALVTLLGGCKVHGDVRRGKALTKRIVALEPENPGSYVLLNNMYAAAGRWDDVAKLR 598

Query: 543 EMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLK-AAGHVPDT 601
             M+K+G ++  G SSIE+R  ++EF VGD S+P+  EI ++L  + +++K   G+VPDT
Sbjct: 599 RYMRKKGVKRQTGCSSIEYRDKIYEFSVGDTSNPRNLEIRAELERLYSRMKEEEGYVPDT 658

Query: 602 TQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSG 661
             V   + D K KE  L+ HSE++A+ FGLI     S +RI+KNLRVC+DCH+V KL S 
Sbjct: 659 RDVFHDVSDDK-KEELLKFHSEKMAMGFGLITSPPGSTLRIIKNLRVCSDCHTVGKLASK 717

Query: 662 IYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           I  R IIVRD +RFHHF+ G CSC D+W
Sbjct: 718 ITGRRIIVRDGTRFHHFEGGICSCGDYW 745



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 126/439 (28%), Positives = 222/439 (50%), Gaps = 14/439 (3%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           AR +FDRI Q  +   +++L++CYV N    EAL ++ +++ + +  D +TL  V+    
Sbjct: 21  ARQVFDRIKQRNAFS-WSILVECYVQNAMYQEALEVYKEMVRKEISIDAYTLSSVLAACT 79

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD-KDLVSWN 192
           +L  ++EG+ +     +LGF  D  V +SL+ ++AK G ++    VF +M   +D++S  
Sbjct: 80  KLLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLEEAESVFRSMGAMRDIISVT 139

Query: 193 CLIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKC-----GKVEIAREIFY 243
            +I  YV+ G+ ++A+  + +M  +    D F++  ++   S       GK  I + I  
Sbjct: 140 AMIGAYVRHGKNDLALDTYWKMRSQGLEPDAFTYAAILGACSSPDFLLDGK-HIHKHILE 198

Query: 244 RMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALEL 303
                N+   NA+I  Y K G +  +  LF  M+++D+++WN+MIA Y L G   +A  L
Sbjct: 199 SKHFGNISVRNALITMYAKCGSLKDSKSLFLTMDVKDVVSWNAMIAAYTLYGHDKDAFSL 258

Query: 304 LETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSK 363
              M      P+  T  S L A A    L  GR +H  I   GF  D  +   LI M+++
Sbjct: 259 FHRMCTLGHTPDIYTFSSILGACASPKRLEDGRMLHVRITARGFDRDFAMQNNLISMFTR 318

Query: 364 CGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGV 423
           CGS+ESA   F +I KK++G W  M+           AL L+  M   G  P   TF  V
Sbjct: 319 CGSLESARRYFYSIEKKELGAWNTMLAAYAQFDKGKDALFLYKNMLLEGFTPDRFTFSSV 378

Query: 424 LNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRP 483
           +++C+  G + +G ++ +      G E  +     LV++  + G L +AK + + +  + 
Sbjct: 379 VDSCASLGALREG-KFIHECSTSCGFEKDVILGTALVNMYAKCGSLADAKKSFDGISNK- 436

Query: 484 NFVIWMSLLSGARNHGNKD 502
           + V W ++++ +  HG+ +
Sbjct: 437 DVVSWSAMIAASAQHGHAE 455



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 104/409 (25%), Positives = 194/409 (47%), Gaps = 14/409 (3%)

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP 215
           D F+ + ++ MY K    +  R+VFD +  ++  SW+ L++ YV+    + A++++ EM 
Sbjct: 1   DTFLANMIIQMYGKCKSPEDARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMV 60

Query: 216 DR----DLFSWTCLVDGFSKCGKVEIAREIFYRMP----NRNLVSWNAMINGYMKAGDVD 267
            +    D ++ + ++   +K   VE  R +  +       +++V   ++I+ + K G ++
Sbjct: 61  RKEISIDAYTLSSVLAACTKLLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLE 120

Query: 268 SACELFDDM-EIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326
            A  +F  M  +RD+I+  +MI  Y  +G+   AL+    M    + P+  T  + L A 
Sbjct: 121 EAESVFRSMGAMRDIISVTAMIGAYVRHGKNDLALDTYWKMRSQGLEPDAFTYAAILGAC 180

Query: 327 AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWT 386
           +    L  G+ +H +I+++    +  +   LI MY+KCGS++ + ++F  +  K V  W 
Sbjct: 181 SSPDFLLDGKHIHKHILESKHFGNISVRNALITMYAKCGSLKDSKSLFLTMDVKDVVSWN 240

Query: 387 AMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIND 446
           AMI    ++G    A  LF++MC +G  P   TF  +L AC+    + DG R  ++ I  
Sbjct: 241 AMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFSSILGACASPKRLEDG-RMLHVRITA 299

Query: 447 YGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG-ARNHGNKDIGE 505
            G +        L+ +  R G LE A+    S+  +     W ++L+  A+    KD   
Sbjct: 300 RGFDRDFAMQNNLISMFTRCGSLESARRYFYSIE-KKELGAWNTMLAAYAQFDKGKDALF 358

Query: 506 YAANNLIK-VAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKD 553
              N L++   PD      V+ +  A+ G   +   + E     GF KD
Sbjct: 359 LYKNMLLEGFTPDRFTFSSVVDSC-ASLGALREGKFIHECSTSCGFEKD 406


>gi|224055823|ref|XP_002298671.1| predicted protein [Populus trichocarpa]
 gi|222845929|gb|EEE83476.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 238/676 (35%), Positives = 373/676 (55%), Gaps = 73/676 (10%)

Query: 19  LPSRLHWNILKFSSTHK---ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYAR 75
           +PS LH   LK  + H+     +++HA  VK+ L     + + LL  Y     N L  A 
Sbjct: 2   IPSYLHR--LKLCTKHQAPLNAKKIHAQIVKSGLNQCQPLPNTLLDAY--GKCNLLQDAH 57

Query: 76  SIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL--DRFLLPDNFTLPCVIKGAA 133
            +FD + Q    V +  ++  Y   +  ++ L++F  +   DR L PD+F    ++K  A
Sbjct: 58  YLFDEMPQRDH-VSWASILTAYNQAKLPNKTLSIFHYMFTTDR-LQPDHFVYATLLKACA 115

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
            L +++ GKQ+H           +FVLS  V                    D D+V  + 
Sbjct: 116 SLCSLRLGKQVHA----------RFVLSPFV--------------------DDDVVK-SS 144

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSW 253
           L+D Y K G   +A  +FD +  +   SWT ++ G+++ G  + A E+F R P RNL SW
Sbjct: 145 LVDMYAKCGLPSIARSVFDSILVKTSVSWTAMLSGYARSGLKDEAMELFLRTPVRNLYSW 204

Query: 254 NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL 313
            A+I+G +++G     C +F +M                      E +++++ ++     
Sbjct: 205 TALISGLVQSGYCIDGCYMFIEMR--------------------REGVDIVDPLV----- 239

Query: 314 PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTV 373
                L S + A A LAVL  G+ +H  ++ +G+     +   L+ MY+KC  I +A  V
Sbjct: 240 -----LSSVVGACANLAVLGLGKQIHGLVIGSGYESCLFISNALVDMYAKCSDILAARNV 294

Query: 374 FRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLV 433
           F  +  + V  WT++IVG   HG A +ALDL+++M    +KP  +TF+G++ ACSHAGLV
Sbjct: 295 FNRMLHRDVVSWTSIIVGAAQHGRAKEALDLYDQMVLAEIKPNEVTFVGLIYACSHAGLV 354

Query: 434 NDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLS 493
           + GR+ F  MI DY I P+++ + C +D+L R+G+L EA+  I++MP +P+   W +LLS
Sbjct: 355 SKGRKLFKAMIEDYRISPSLQLFTCFLDLLSRSGHLNEAEDLIKTMPHKPDEPTWAALLS 414

Query: 494 GARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKD 553
             ++HGN ++G   A+ L+ +       YV+LSN+YA AG+W+++S VR++M     ++ 
Sbjct: 415 ACKHHGNTEMGVRIADRLLSLNMHEPSTYVLLSNVYAGAGKWEQMSRVRKLMTDMEVKRK 474

Query: 554 PGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKE 613
           PG SSI+       F  G+  HP  DEI   L E+  +++  G++PDT+ VL  +E+Q E
Sbjct: 475 PGYSSIDLGKESQVFHAGETCHPMKDEIFGLLKELDAEMRKRGYIPDTSYVLHDMEEQ-E 533

Query: 614 KEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNS 673
           KE EL  HSER A+A+GL+     + IRIVKNLR+C DCH+  KL S I ++EIIVRD +
Sbjct: 534 KERELFWHSERWAVAYGLLKAVPGTVIRIVKNLRICGDCHTFLKLTSSIVHKEIIVRDAT 593

Query: 674 RFHHFKNGSCSCKDFW 689
           R+HHFK+G CSC DFW
Sbjct: 594 RYHHFKDGRCSCNDFW 609


>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
 gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
           Group]
 gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
          Length = 658

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 227/658 (34%), Positives = 360/658 (54%), Gaps = 13/658 (1%)

Query: 40  LHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVF 99
           +H   VK        + + L+S Y     N +  A  +FD + Q   ++ +N +I     
Sbjct: 6   VHGYLVKYGFGAQCAVCNALISFYAKS--NRIEDALMVFDEMPQR-DIISWNSIIGGCAS 62

Query: 100 NQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFV 159
           N    +A+ LF  +       D+ TL  V+    +      G  +HG   + G   +  +
Sbjct: 63  NGLYDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSL 122

Query: 160 LSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP---- 215
            ++L+ MY+   +     ++F  M+ K++VSW  +I  Y + G  +    LF EM     
Sbjct: 123 GNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGI 182

Query: 216 DRDLFSWTCLVDGFSKCGKVEIAREIF-YRMPN---RNLVSWNAMINGYMKAGDVDSACE 271
             D+F+ T  +D F+    ++  + +  Y + N     L   NA++  Y+K G ++ A  
Sbjct: 183 RPDVFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARF 242

Query: 272 LFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAV 331
           +FD +  +D I+WN++I GY  +    EA  L   ML+  + PN  T+   L A A L+ 
Sbjct: 243 IFDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEMLL-QLRPNAVTMACILPAAASLSS 301

Query: 332 LNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVG 391
           L +GR MH+Y V+ G++ D  +   L+ MY KCG++  A  +F  ++ K +  WT MI G
Sbjct: 302 LERGREMHAYAVRRGYLEDNFVANALVDMYVKCGALLLARRLFDMLTNKNLISWTIMIAG 361

Query: 392 LGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP 451
            GMHG    A+ LF +M   G++P A +F  +L ACSH+GL ++G R+FN M N++ IEP
Sbjct: 362 YGMHGRGRDAIALFEQMKGSGIQPDAGSFSAILYACSHSGLRDEGWRFFNAMRNEHRIEP 421

Query: 452 TIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNL 511
            ++HY C+VD+LC TG L+EA   IE+MP+ P+  IW+SLL G R H N  + E  A  +
Sbjct: 422 KLKHYACMVDLLCHTGNLKEAYEFIETMPIEPDSSIWVSLLRGCRIHRNVKLAEKVAEMV 481

Query: 512 IKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVG 571
            ++ P+  G YV+L+NIYA A +W+ V +++  +  RG R++ G S IE RG  H F   
Sbjct: 482 FELEPENTGYYVLLANIYAEAERWEAVRKLKNKVGGRGLRENTGCSWIEVRGKAHIFFAE 541

Query: 572 DKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGL 631
           +++HPQ   I   L ++  +++  GH P     L+  +D    EA L  HS +LA+AFG+
Sbjct: 542 NRNHPQGMRIAEFLDDVARRMQEEGHDPKKKYALMGADDAVHDEA-LCGHSSKLAVAFGV 600

Query: 632 INVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           +N+    PIR+ KN RVC+ CH   K +S +  REII+RD++RFHHF+ G CSC+ +W
Sbjct: 601 LNLSQGRPIRVTKNSRVCSHCHEAAKFISKMCGREIILRDSNRFHHFEEGRCSCRGYW 658



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 105/369 (28%), Positives = 177/369 (47%), Gaps = 13/369 (3%)

Query: 140 EGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYV 199
           +G  +HG + K GFG    V ++L+S YAK   I+    VFD M  +D++SWN +I G  
Sbjct: 2   DGLVVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCA 61

Query: 200 KKGEVEVAMKLFDEM--PDRDLFSWT-------CLVDGFSKCGKVEIAREIFYRMPNRNL 250
             G  + A++LF  M    ++L S T       C+   +S  G V     +   + +   
Sbjct: 62  SNGLYDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETS 121

Query: 251 VSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIG 310
           +  NA+++ Y    D  S  ++F +ME +++++W +MI  Y   G F +   L + M + 
Sbjct: 122 LG-NALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLE 180

Query: 311 DVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESA 370
            + P+   + SAL A AG   L  G+ +H Y ++NG      +   L++MY KCG +E A
Sbjct: 181 GIRPDVFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEA 240

Query: 371 LTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHA 430
             +F  ++KK    W  +I G     +A +A  LFN+M  + ++P A+T   +L A +  
Sbjct: 241 RFIFDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEML-LQLRPNAVTMACILPAAASL 299

Query: 431 GLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMS 490
             +  GR      +    +E        LVD+  + G L  A+   + M    N + W  
Sbjct: 300 SSLERGREMHAYAVRRGYLEDNFVA-NALVDMYVKCGALLLARRLFD-MLTNKNLISWTI 357

Query: 491 LLSGARNHG 499
           +++G   HG
Sbjct: 358 MIAGYGMHG 366



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 47/241 (19%), Positives = 98/241 (40%), Gaps = 47/241 (19%)

Query: 32  STHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYN 91
           S+ +  +++HA +V+   +  + +++ L+ +YV      L  AR +FD +L + +L+ + 
Sbjct: 300 SSLERGREMHAYAVRRGYLEDNFVANALVDMYVK--CGALLLARRLFD-MLTNKNLISWT 356

Query: 92  LLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKL 151
           ++I  Y  + R  +A+ LF  +    + PD  +   ++   +  G   E           
Sbjct: 357 IMIAGYGMHGRGRDAIALFEQMKGSGIQPDAGSFSAILYACSHSGLRDE----------- 405

Query: 152 GFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK-----DLVSWNCLIDGYVKKGEVEV 206
                                   G R F+AM ++      L  + C++D     G ++ 
Sbjct: 406 ------------------------GWRFFNAMRNEHRIEPKLKHYACMVDLLCHTGNLKE 441

Query: 207 AMKLFDEMP-DRDLFSWTCLVDGFSKCGKVEIAR---EIFYRMPNRNLVSWNAMINGYMK 262
           A +  + MP + D   W  L+ G      V++A    E+ + +   N   +  + N Y +
Sbjct: 442 AYEFIETMPIEPDSSIWVSLLRGCRIHRNVKLAEKVAEMVFELEPENTGYYVLLANIYAE 501

Query: 263 A 263
           A
Sbjct: 502 A 502


>gi|297738897|emb|CBI28142.3| unnamed protein product [Vitis vinifera]
          Length = 571

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 221/592 (37%), Positives = 327/592 (55%), Gaps = 65/592 (10%)

Query: 9   SSPIH-ALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPH 67
           S P+H +   H   +    +LK   + +  +Q+    ++T         ++ +    DP 
Sbjct: 19  SKPLHLSTSSHFTKKSCIFLLKNCKSMQHLKQIQTQILRTGFHQSGDTLNKFMVCCTDPS 78

Query: 68  INNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPC 127
           I NLHYA  IF+ I   P L +YNL+IK +  N    +A+ LF  L +  L PDNFT P 
Sbjct: 79  IGNLHYAERIFNYI-DIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPF 137

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD 187
           V K    LG ++EG++++G V K G  FD +V +SL+ M                     
Sbjct: 138 VFKAIGCLGEVREGEKVYGFVVKSGLEFDTYVCNSLMDM--------------------- 176

Query: 188 LVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGK----VEIAREIFY 243
                     Y + G V+   ++F+EMP RD+ SW  L+ G+ KC +    V++ R+IF 
Sbjct: 177 ----------YAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDAVDVFRQIFN 226

Query: 244 RMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALEL 303
            MP + ++ W +M++GY+  G +D A ELF+   +RD++ W +MI GY    RF +A+ L
Sbjct: 227 DMPIKTVICWTSMVSGYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDDAVAL 286

Query: 304 LETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSK 363
              M I  V P+  TLV+ L+                         D V+GT LI+MY+K
Sbjct: 287 FREMQIKRVSPDRFTLVALLT-------------------------DAVVGTALIEMYAK 321

Query: 364 CGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGV 423
           CG IE +L +F  + +K    WT++I GL M+G  ++AL+LF +M + G+KP  ITFIGV
Sbjct: 322 CGFIEKSLEIFNGLKEKDTASWTSIICGLAMNGKTSKALELFAEMVQTGVKPDDITFIGV 381

Query: 424 LNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRP 483
           L+ACSH GLV +GR++F  M   Y IEP +EHYGCL+D+L R G L+EA+  IE  P   
Sbjct: 382 LSACSHGGLVEEGRKHFRSMTAVYQIEPKLEHYGCLIDLLGRAGQLDEAEELIEKSPNVN 441

Query: 484 NFVI---WMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSE 540
           N VI   + +LLS  R HGN ++GE  A  L+ +       + +L+NIYA+A +W+ V++
Sbjct: 442 NEVIVPLYGALLSACRTHGNVEMGERVAKRLVGIESGDSSVHTLLANIYASADRWEDVTK 501

Query: 541 VREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKL 592
           VR  MK  G +K PG SS+E  G++HEF+VGD SHP+  EI+S L  +   L
Sbjct: 502 VRRKMKDLGVKKVPGCSSVEVNGIVHEFLVGDASHPEMREIYSMLDSIAKPL 553


>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
          Length = 633

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 207/580 (35%), Positives = 329/580 (56%), Gaps = 10/580 (1%)

Query: 118 LLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGR 177
           L P       +I   A+   +   + IH  + +     D F+L+SL+ MY K G +   R
Sbjct: 56  LAPTPRLYHSIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKCGAVSDAR 115

Query: 178 RVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCG 233
            VFD M  +D+VSW  LI GY +      A+ L  +M         F++T L+     CG
Sbjct: 116 HVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACG 175

Query: 234 KVEIAREIFYRMPNRN----LVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIA 289
              I  ++       N    +   +A+++ Y +   +D A  +FD +  ++ ++WN++IA
Sbjct: 176 GCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIA 235

Query: 290 GYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVV 349
           G+         L     M          T  S  SA A +  L +GRW+H++++K+G  +
Sbjct: 236 GFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKL 295

Query: 350 DGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMC 409
              +G  ++ MY+K GS+  A  VF  + K+ +  W  M+  L  +G+  +A+  F ++ 
Sbjct: 296 TAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIR 355

Query: 410 RMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYL 469
           + G++   ITF+ VL ACSH GLV +G+ YF+MM  DY ++P I+HY   VD+L R G L
Sbjct: 356 KCGIQLNQITFLSVLTACSHGGLVKEGKHYFDMM-KDYNVQPEIDHYVSFVDLLGRAGLL 414

Query: 470 EEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIY 529
           +EA   +  MPM P   +W +LL   R H N  +G+YAA+++ ++ PD  G  V+L NIY
Sbjct: 415 KEALIFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHVFELDPDDTGPPVLLYNIY 474

Query: 530 AAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMR 589
           A+ G+W+  + VR+MMK  G +K+P  S ++    +H FV  D +HP++ +I+    E+ 
Sbjct: 475 ASTGKWNDAARVRKMMKATGVKKEPACSWVQIENSVHMFVADDDTHPKSGDIYRMWEEIN 534

Query: 590 NKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVC 649
            ++K AG+VP+T  VLL I +Q E+E +L+ HSE++A+AF LIN+ + + IRI+KN+R+C
Sbjct: 535 MRIKKAGYVPNTAHVLLHINEQ-ERETKLKYHSEKIALAFALINMPAGASIRIMKNIRIC 593

Query: 650 NDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            DCHS  K +S ++ REI+VRD +RFHHF  GSCSC D+W
Sbjct: 594 GDCHSAFKYVSKVFKREIVVRDTNRFHHFSEGSCSCGDYW 633



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/364 (27%), Positives = 170/364 (46%), Gaps = 47/364 (12%)

Query: 74  ARSIFDRILQHPS--LVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKG 131
           AR +FD++   PS  +V +  LI  Y  N    EA+ L  D+L     P+ FT   ++K 
Sbjct: 114 ARHVFDKM---PSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKA 170

Query: 132 AARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSW 191
               G    G+Q+H L  K  +  D +V S+L+ MYA+  ++D+   VFD +  K+ VSW
Sbjct: 171 TGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSW 230

Query: 192 NCLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRM-- 245
           N LI G+ +K + E  +  F EM         F+++ +   F++ G +E  R +   +  
Sbjct: 231 NALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIK 290

Query: 246 PNRNLVSW--NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALEL 303
             + L ++  N M+  Y K+G +  A ++FD M+ RDL+TWN+M+      G   EA+  
Sbjct: 291 SGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAH 350

Query: 304 LETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSK 363
            E +    +  N  T +S L+A +   ++ +G+  H + +   + V              
Sbjct: 351 FEEIRKCGIQLNQITFLSVLTACSHGGLVKEGK--HYFDMMKDYNV-------------- 394

Query: 364 CGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGV 423
                          + ++ H+ + +  LG  G+  +AL    K   M M+PTA  +  +
Sbjct: 395 ---------------QPEIDHYVSFVDLLGRAGLLKEALIFVFK---MPMEPTAAVWGAL 436

Query: 424 LNAC 427
           L AC
Sbjct: 437 LGAC 440



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 87/194 (44%), Gaps = 2/194 (1%)

Query: 301 LELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQM 360
           L  L+ +  G++ P      S ++A A    L   R +H+++ ++    D  L   LI M
Sbjct: 45  LRELDLLHAGELAPTPRLYHSIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHM 104

Query: 361 YSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITF 420
           Y KCG++  A  VF  +  + V  WT +I G   + M  +A+ L   M R   +P   TF
Sbjct: 105 YCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTF 164

Query: 421 IGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP 480
             +L A    G  + G +   + +  Y  +  +     L+D+  R   ++ A    + + 
Sbjct: 165 TSLLKATGACGGCSIGEQMHALAVK-YNWDEDVYVGSALLDMYARCEQMDMAIMVFDRL- 222

Query: 481 MRPNFVIWMSLLSG 494
           +  N V W +L++G
Sbjct: 223 VSKNEVSWNALIAG 236


>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 631

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 225/620 (36%), Positives = 351/620 (56%), Gaps = 12/620 (1%)

Query: 80  RILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLL-PDN-FTLPCVIKGAARLGA 137
           RIL   S  L    +  Y F  +S     +    +D F   P N +    +++      A
Sbjct: 14  RILSILSFSLNLFPVSPYYFLHQSFATQLIPQHKVDSFPSSPSNHYYYASLLESCISAKA 73

Query: 138 IKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDG 197
           ++ GKQ+H  + +LG  ++  + + LV+ Y+    +     +FD +   +L  WN LI  
Sbjct: 74  LEPGKQLHARLCQLGIAYNLDLATKLVNFYSVCNSLRNAHHLFDKIPKGNLFLWNVLIRA 133

Query: 198 YVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMP----NRN 249
           Y   G  E A+ L+ +M +  L    F+   ++   S    +   R I  R+      R+
Sbjct: 134 YAWNGPHETAISLYHQMLEYGLKPDNFTLPFVLKACSALSTIGEGRVIHERVIRSGWERD 193

Query: 250 LVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLI 309
           +    A+++ Y K G V  A  +FD +  RD + WNSM+A Y  NG   E+L L   M  
Sbjct: 194 VFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLWNSMLAAYAQNGHPDESLSLCCEMAA 253

Query: 310 GDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIES 369
             V P +ATLV+ +S+ A +A L  GR +H +  ++GF  +  + T LI MY+KCGS++ 
Sbjct: 254 KGVRPTEATLVTVISSSADIACLPHGREIHGFGWRHGFQYNDKVKTALIDMYAKCGSVKV 313

Query: 370 ALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSH 429
           A  +F  + +K+V  W A+I G  MHG+A +ALDLF +M +   +P  ITF+G L ACS 
Sbjct: 314 ACVLFERLREKRVVSWNAIITGYAMHGLAVEALDLFERMMKEA-QPDHITFVGALAACSR 372

Query: 430 AGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWM 489
             L+++GR  +N+M+ D  I PT+EHY C+VD+L   G L+EA   I  M + P+  +W 
Sbjct: 373 GRLLDEGRALYNLMVRDCRINPTVEHYTCMVDLLGHCGQLDEAYDLIRQMDVMPDSGVWG 432

Query: 490 SLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRG 549
           +LL+  + HGN ++ E A   LI++ PD  G YV+L+N+YA +G+W+ V+ +R++M  +G
Sbjct: 433 ALLNSCKTHGNVELAEVALEKLIELEPDDSGNYVILANMYAQSGKWEGVARLRQLMIDKG 492

Query: 550 FRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIE 609
            +K+   S IE +  ++ F+ GD SHP +  I+++L  +   ++ AG+VPDT  V   +E
Sbjct: 493 IKKNIACSWIEVKNKVYAFLSGDVSHPNSGAIYAELKRLEGLMREAGYVPDTGSVFHDVE 552

Query: 610 DQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIV 669
           +  EK   + +HSERLAIAFGLI+    + + I KNLR+C DCH   K +S I  REI V
Sbjct: 553 ED-EKTDMVCSHSERLAIAFGLISTLPGTRLLITKNLRICEDCHVAIKFISKITEREITV 611

Query: 670 RDNSRFHHFKNGSCSCKDFW 689
           RD +R+HHF++G CSC D+W
Sbjct: 612 RDVNRYHHFRHGLCSCGDYW 631



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 124/457 (27%), Positives = 214/457 (46%), Gaps = 78/457 (17%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +QLHA   +  + Y+  ++++L++ Y     N+L  A  +FD+I +  +L L+N+LI+ Y
Sbjct: 78  KQLHARLCQLGIAYNLDLATKLVNFY--SVCNSLRNAHHLFDKIPK-GNLFLWNVLIRAY 134

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
            +N     A++L+  +L+  L PDNFTLP V+K  + L  I EG+ IH  V + G+  D 
Sbjct: 135 AWNGPHETAISLYHQMLEYGLKPDNFTLPFVLKACSALSTIGEGRVIHERVIRSGWERDV 194

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
           FV ++LV MYAK G +   R VFD + D+D V WN ++  Y + G  + ++ L  EM  +
Sbjct: 195 FVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLWNSMLAAYAQNGHPDESLSLCCEMAAK 254

Query: 218 DL----------------------------FSW-----------TCLVDGFSKCGKVEIA 238
            +                            F W           T L+D ++KCG V++A
Sbjct: 255 GVRPTEATLVTVISSSADIACLPHGREIHGFGWRHGFQYNDKVKTALIDMYAKCGSVKVA 314

Query: 239 REIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFM 298
             +F R+  + +VSWNA+I G                               Y ++G  +
Sbjct: 315 CVLFERLREKRVVSWNAIITG-------------------------------YAMHGLAV 343

Query: 299 EALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLG-TLL 357
           EAL+L E M+  +  P+  T V AL+A +   +L++GR +++ +V++  +   V   T +
Sbjct: 344 EALDLFERMM-KEAQPDHITFVGALAACSRGRLLDEGRALYNLMVRDCRINPTVEHYTCM 402

Query: 358 IQMYSKCGSIESALTVFRAIS-KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT 416
           + +   CG ++ A  + R +      G W A++     HG    A     K+  +    +
Sbjct: 403 VDLLGHCGQLDEAYDLIRQMDVMPDSGVWGALLNSCKTHGNVELAEVALEKLIELEPDDS 462

Query: 417 AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTI 453
              ++ + N  + +G      R   +MI D GI+  I
Sbjct: 463 G-NYVILANMYAQSGKWEGVARLRQLMI-DKGIKKNI 497


>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
 gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
          Length = 874

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 232/659 (35%), Positives = 372/659 (56%), Gaps = 12/659 (1%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           Q++HA SVK        + + L+++Y    +  +  A+S+F+  ++   +V +N L+   
Sbjct: 221 QRVHAQSVKFGCRSSVFVCNSLMNMYAKCGL--VEDAKSVFN-WMETRDMVSWNTLMAGL 277

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
             N+   EAL LF +           T   VIK  A L  +   +Q+H  V K GF    
Sbjct: 278 QLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTG 337

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFD-AMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM-P 215
            V+++L   Y+K GE+     +F      +++VSW  +I G ++ G++ +A+ LF  M  
Sbjct: 338 NVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMRE 397

Query: 216 DRDL---FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACEL 272
           DR +   F+++ ++         +I  ++             A++  Y K G  + A  +
Sbjct: 398 DRVMPNEFTYSAMLKASLSILPPQIHAQVIKTNYQHIPFVGTALLASYSKFGSTEDALSI 457

Query: 273 FDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVA-GLAV 331
           F  +E +D++ W++M++ +   G    A  L   M I  + PN+ T+ S + A A   A 
Sbjct: 458 FKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAG 517

Query: 332 LNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVG 391
           +++GR  H+  +K  +     + + L+ MYS+ G+I+SA  VF   + + +  W +MI G
Sbjct: 518 VDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISG 577

Query: 392 LGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP 451
              HG + +A++ F +M   G++   +TF+ V+  C+H GLV +G++YF+ M+ D+ I P
Sbjct: 578 YAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINP 637

Query: 452 TIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNL 511
           T+EHY C+VD+  R G L+E  S I  MP     ++W +LL   R H N ++G+++A+ L
Sbjct: 638 TMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGACRVHKNVELGKFSADKL 697

Query: 512 IKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVG 571
           + + P     YV+LSNIYAAAG+W +  EVR++M  R  +K+ G S I+ +  +H F+  
Sbjct: 698 LSLEPHDSSTYVLLSNIYAAAGKWKERDEVRKLMDYRKVKKEAGCSWIQIKNKVHSFIAF 757

Query: 572 DKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCI-EDQKEKEAELENHSERLAIAFG 630
           DKSHP +D+I+ KL  +  +LK  G+ P+T+ VL  I EDQ  KEA L  HSERLA+AFG
Sbjct: 758 DKSHPMSDQIYKKLKVIITRLKQDGYSPNTSFVLHDIAEDQ--KEAMLVAHSERLALAFG 815

Query: 631 LINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           LI     +P++IVKNLRVC DCH V K++S I +REII+RD SRFHHF  G+CSC DFW
Sbjct: 816 LIATPPGTPLQIVKNLRVCGDCHMVMKMVSMIEDREIIMRDCSRFHHFNGGACSCGDFW 874



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 103/363 (28%), Positives = 171/363 (47%), Gaps = 10/363 (2%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           AR   D I +  + V  N ++  Y       E L  F       +L D+ TL CV+K   
Sbjct: 51  ARYPLDEIPRRDAAVGANRVLFDYARRGMVLEVLDQFSVARRGGVLVDSATLSCVLKACR 110

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVL-SSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWN 192
            +     G+Q+H L  K G    +    +SLV MY K G +  G  VF+ M  K++V+W 
Sbjct: 111 SVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWT 170

Query: 193 CLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPN- 247
            L+ G          M LF  M    +    F++  ++   +  G +++ + +  +    
Sbjct: 171 SLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKF 230

Query: 248 ---RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELL 304
               ++   N+++N Y K G V+ A  +F+ ME RD+++WN+++AG +LN   +EAL+L 
Sbjct: 231 GCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLF 290

Query: 305 ETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKC 364
                       +T  + +   A L  L   R +HS ++K+GF + G + T L   YSKC
Sbjct: 291 HESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKC 350

Query: 365 GSIESALTVFRAIS-KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGV 423
           G +  AL +F   +  + V  WTA+I G   +G    A+ LF++M    + P   T+  +
Sbjct: 351 GELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAM 410

Query: 424 LNA 426
           L A
Sbjct: 411 LKA 413



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 117/247 (47%), Gaps = 1/247 (0%)

Query: 254 NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL 313
            ++++ YMK G V    E+F+ M  ++++TW S++ G        E + L   M    + 
Sbjct: 139 TSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIW 198

Query: 314 PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTV 373
           PN  T  S LSAVA    L+ G+ +H+  VK G      +   L+ MY+KCG +E A +V
Sbjct: 199 PNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSV 258

Query: 374 FRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLV 433
           F  +  + +  W  ++ GL ++    +AL LF++      K T  T+  V+  C++   +
Sbjct: 259 FNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQL 318

Query: 434 NDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLS 493
              R+  + ++  +G   T      L D   + G L +A +         N V W +++S
Sbjct: 319 ALARQLHSCVLK-HGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIIS 377

Query: 494 GARNHGN 500
           G   +G+
Sbjct: 378 GCIQNGD 384



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 156/335 (46%), Gaps = 30/335 (8%)

Query: 19  LPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIF 78
           +P+   ++ +  +S      Q+HA  +KTN  +   + + LL+ Y      +   A SIF
Sbjct: 401 MPNEFTYSAMLKASLSILPPQIHAQVIKTNYQHIPFVGTALLASY--SKFGSTEDALSIF 458

Query: 79  DRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGA- 137
            ++++   +V ++ ++ C+        A  LF  +  + + P+ FT+  VI   A   A 
Sbjct: 459 -KMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAG 517

Query: 138 IKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDG 197
           + +G+Q H +  K  +     V S+LVSMY++ G ID  + VF+   D+DLVSWN +I G
Sbjct: 518 VDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISG 577

Query: 198 YVKKGEVEVAMKLFDEMP----DRDLFSWTCLVDGFSKCGKVEIAREIFYRMP-----NR 248
           Y + G    A++ F +M       D  ++  ++ G +  G V   ++ F  M      N 
Sbjct: 578 YAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINP 637

Query: 249 NLVSWNAMINGYMKAGDVDSACELFDDMEI-RDLITWNSMIAGYELN-----GRFMEALE 302
            +  +  M++ Y +AG +D    L  DM      + W +++    ++     G+F  A +
Sbjct: 638 TMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGACRVHKNVELGKF-SADK 696

Query: 303 LLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRW 337
           LL       + P+D++    LS +   A    G+W
Sbjct: 697 LLS------LEPHDSSTYVLLSNIYAAA----GKW 721


>gi|356538057|ref|XP_003537521.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 215/592 (36%), Positives = 331/592 (55%), Gaps = 45/592 (7%)

Query: 141 GKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDG--- 197
            K++H  + K G    + + ++L++ Y K G I    ++FDA+  +D V+W  L+     
Sbjct: 22  AKKLHAQIIKAGLNQHEPIPNTLLNAYGKCGLIQDALQLFDALPRRDPVAWASLLTACNL 81

Query: 198 ---------------------------------------YVKKGEVEVAMKLFDEMPDRD 218
                                                  +VK+G+   A        D D
Sbjct: 82  SNRPHRALSISRSLLSTGFHPDHFVFASLVKACANLGVLHVKQGKQVHARFFLSPFSDDD 141

Query: 219 LFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEI 278
           +   + L+D ++K G  +  R +F  + + N +SW  MI+GY ++G    A  LF     
Sbjct: 142 VVK-SSLIDMYAKFGLPDYGRAVFDSISSLNSISWTTMISGYARSGRKFEAFRLFRQTPY 200

Query: 279 RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDA-TLVSALSAVAGLAVLNKGRW 337
           R+L  W ++I+G   +G  ++A  L   M    +   D   L S + A A LA+   G+ 
Sbjct: 201 RNLFAWTALISGLVQSGNGVDAFHLFVEMRHEGISVTDPLVLSSVVGACANLALWELGKQ 260

Query: 338 MHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGM 397
           MH  ++  G+     +   LI MY+KC  + +A  +F  + +K V  WT++IVG   HG 
Sbjct: 261 MHGVVITLGYESCLFISNALIDMYAKCSDLVAAKYIFCEMCRKDVVSWTSIIVGTAQHGQ 320

Query: 398 ATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYG 457
           A +AL L+++M   G+KP  +TF+G+++ACSHAGLV+ GR  F  M+ D+GI P+++HY 
Sbjct: 321 AEEALALYDEMVLAGVKPNEVTFVGLIHACSHAGLVSKGRTLFRTMVEDHGISPSLQHYT 380

Query: 458 CLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPD 517
           CL+D+  R+G+L+EA++ I +MP+ P+   W +LLS  + HGN  +    A++L+ + P+
Sbjct: 381 CLLDLFSRSGHLDEAENLIRTMPVNPDEPTWAALLSSCKRHGNTQMAVRIADHLLNLKPE 440

Query: 518 TIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQ 577
               Y++LSNIYA AG W+ VS+VR++M     +K PG S I+     H F  G+ SHP 
Sbjct: 441 DPSSYILLSNIYAGAGMWEDVSKVRKLMMTLEAKKAPGYSCIDLGKGSHVFYAGETSHPM 500

Query: 578 TDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSR 637
            DEI   + E+  +++  G+ PDT+ VL  + DQ+EKE +L  HSERLA+A+GL+     
Sbjct: 501 RDEIIGLMRELDEEMRKRGYAPDTSSVLHDM-DQQEKERQLFWHSERLAVAYGLLKAVPG 559

Query: 638 SPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           + IRIVKNLRVC DCH+V KL+S I NREI VRD  R+HHFK+G+CSC DFW
Sbjct: 560 TVIRIVKNLRVCGDCHTVLKLISAITNREIYVRDAKRYHHFKDGNCSCNDFW 611



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 127/454 (27%), Positives = 215/454 (47%), Gaps = 50/454 (11%)

Query: 37  TQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKC 96
            ++LHA  +K  L  H  I + LL+ Y    +  +  A  +FD + +   +   +LL  C
Sbjct: 22  AKKLHAQIIKAGLNQHEPIPNTLLNAYGKCGL--IQDALQLFDALPRRDPVAWASLLTAC 79

Query: 97  YVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGA--IKEGKQIHGLVFKLGFG 154
            + N R H AL++   LL     PD+F    ++K  A LG   +K+GKQ+H   F   F 
Sbjct: 80  NLSN-RPHRALSISRSLLSTGFHPDHFVFASLVKACANLGVLHVKQGKQVHARFFLSPFS 138

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
            D  V SSL+ MYAKFG  D GR VFD++   + +SW  +I GY + G    A +LF + 
Sbjct: 139 DDDVVKSSLIDMYAKFGLPDYGRAVFDSISSLNSISWTTMISGYARSGRKFEAFRLFRQT 198

Query: 215 PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR------------------NLVSW--- 253
           P R+LF+WT L+ G  + G    A  +F  M +                   NL  W   
Sbjct: 199 PYRNLFAWTALISGLVQSGNGVDAFHLFVEMRHEGISVTDPLVLSSVVGACANLALWELG 258

Query: 254 -------------------NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELN 294
                              NA+I+ Y K  D+ +A  +F +M  +D+++W S+I G   +
Sbjct: 259 KQMHGVVITLGYESCLFISNALIDMYAKCSDLVAAKYIFCEMCRKDVVSWTSIIVGTAQH 318

Query: 295 GRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLG 354
           G+  EAL L + M++  V PN+ T V  + A +   +++KGR +   +V++  +   +  
Sbjct: 319 GQAEEALALYDEMVLAGVKPNEVTFVGLIHACSHAGLVSKGRTLFRTMVEDHGISPSLQH 378

Query: 355 -TLLIQMYSKCGSIESALTVFRAIS-KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG 412
            T L+ ++S+ G ++ A  + R +        W A++     HG    A+ + + +  + 
Sbjct: 379 YTCLLDLFSRSGHLDEAENLIRTMPVNPDEPTWAALLSSCKRHGNTQMAVRIADHL--LN 436

Query: 413 MKPT-AITFIGVLNACSHAGLVNDGRRYFNMMIN 445
           +KP    ++I + N  + AG+  D  +   +M+ 
Sbjct: 437 LKPEDPSSYILLSNIYAGAGMWEDVSKVRKLMMT 470


>gi|449433085|ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 601

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 222/576 (38%), Positives = 338/576 (58%), Gaps = 17/576 (2%)

Query: 29  KFSSTHK-----ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQ 83
           K S  HK     + +QLHA  +K+NL     +  +L+S +       +  A + F+++ Q
Sbjct: 23  KLSDLHKCTNLNQVKQLHAQILKSNLHVDLFVVPKLISAF--SLCRQMLLATNAFNQV-Q 79

Query: 84  HPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIK---GAARLGAIKE 140
           +P++ LYN +I+ +  N +  +A   F  +       DNFT P ++K   G   L  I+ 
Sbjct: 80  YPNVHLYNTMIRAHSHNSQPSQAFATFFAMQRDGHYADNFTFPFLLKVCTGNVWLPVIE- 138

Query: 141 GKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGE--IDLGRRVFDAMDDK-DLVSWNCLIDG 197
              +H  + K GF  D FV +SL+  Y+K G   I   +++F +M  + D+VSWN +I G
Sbjct: 139 --SVHAQIEKFGFMSDVFVPNSLIDSYSKCGSCGISAAKKLFVSMGARRDVVSWNSMISG 196

Query: 198 YVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMI 257
             K G  E A K+FDEMP++D  SW  ++DG+ K GK++ A ++F  MP RN+VSW+ M+
Sbjct: 197 LAKGGLYEEARKVFDEMPEKDGISWNTMLDGYVKVGKMDDAFKLFDEMPERNVVSWSTMV 256

Query: 258 NGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDA 317
            GY KAGD++ A  LFD M +++L++W  +++G+   G   EA+ L + M    +  ++ 
Sbjct: 257 LGYCKAGDMEMARMLFDKMPVKNLVSWTIIVSGFAEKGLAREAISLFDQMEKACLKLDNG 316

Query: 318 TLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAI 377
           T++S L+A A   +L  G  +H+ I  N F     +   L+ MY+KCG +  A  VF  I
Sbjct: 317 TVMSILAACAESGLLGLGEKIHASIKNNNFKCTTEISNALVDMYAKCGRLNIAYDVFNDI 376

Query: 378 SKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGR 437
             K V  W AM+ GL MHG   +AL+LF +M   G  P  +T IGVL AC+HAGL++DG 
Sbjct: 377 KNKDVVSWNAMLQGLAMHGHGVKALELFKRMKEEGFSPNKVTMIGVLCACTHAGLIDDGI 436

Query: 438 RYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARN 497
           RYF+ M  DY + P +EHYGC+VD+L R G LEEA   I +MPM PN +IW +LL   R 
Sbjct: 437 RYFSTMERDYTLVPEVEHYGCMVDLLGRKGRLEEAIRLIRNMPMAPNAIIWGTLLGACRM 496

Query: 498 HGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSS 557
           H   ++     ++L+++ P   G + +LSNIYAAAG W+ V+  R  M+  G +K  G+S
Sbjct: 497 HNAVELAREVLDHLVELEPTDSGNFSMLSNIYAAAGDWNCVANTRLRMRSIGTKKPSGAS 556

Query: 558 SIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLK 593
           SIE    +HEF V D+SHP++D I+  ++ +R++LK
Sbjct: 557 SIEVNNEVHEFTVFDRSHPKSDNIYQVINGLRHELK 592


>gi|297815228|ref|XP_002875497.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321335|gb|EFH51756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 629

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/557 (38%), Positives = 338/557 (60%), Gaps = 7/557 (1%)

Query: 36  ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIK 95
           + +QLHA  ++ NL     I+ +L+S        NL  A  +F+++ Q P++ L N LI+
Sbjct: 34  QVKQLHAQIIRRNLHQDLHIAPKLISALSLCRQTNL--ALRVFNQV-QEPNVHLCNSLIR 90

Query: 96  CYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF 155
            +  N + ++A  +F ++    L  DNFT P ++K  + L  +   K +H  + KLG   
Sbjct: 91  AHALNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGLSWLPVVKMMHNHIEKLGLSS 150

Query: 156 DKFVLSSLVSMYAKFGEIDL--GRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDE 213
           D +V ++L+  Y++ G + +    ++F+ M ++D VSWN ++ G VK GE+  A KLFDE
Sbjct: 151 DIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARKLFDE 210

Query: 214 MPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELF 273
           MP RDL SW  ++DG+++C ++  A E+F +MP RN VSW+ M+ GY KAGD++ A  +F
Sbjct: 211 MPQRDLISWNTMLDGYARCREMSRAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMF 270

Query: 274 DDMEI--RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAV 331
           D M    ++++TW  +IAGY   G   EA +L++ M+   +  + A  +S L+A A   +
Sbjct: 271 DKMPFPAKNVVTWTIIIAGYAEKGLLKEADKLVDQMVASGLRFDAAAAISILAACAESGL 330

Query: 332 LNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVG 391
           L+ G   HS I K+    +  +   L+ MY+KCGS++ A  VF  + KK +  W  M+ G
Sbjct: 331 LSLGMRAHSIIKKSNLNSNASVLNALLDMYAKCGSLKKAFDVFNDMPKKDLVSWNTMLHG 390

Query: 392 LGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP 451
           LG+HG   +A++LF++M + G+ P  +TFI VL +C+HAGL+++G  YF  M   Y + P
Sbjct: 391 LGVHGHGKEAIELFSRMRKEGIWPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVP 450

Query: 452 TIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNL 511
            +EHYGCLVD+L R G L+EA   +++MPM PN VIW +LL   R H   DI +   +NL
Sbjct: 451 KVEHYGCLVDLLGRGGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDNL 510

Query: 512 IKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVG 571
           +K+ P   G Y +LSNIYAAA  W+ V+++R  MK  G  K  G+SS+E    +HEF V 
Sbjct: 511 VKLDPSDPGNYTLLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSVELEDGIHEFTVF 570

Query: 572 DKSHPQTDEIHSKLSEM 588
           DKSHP++D+I+  L  +
Sbjct: 571 DKSHPKSDQIYQMLGSL 587



 Score = 50.1 bits (118), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 93/231 (40%), Gaps = 13/231 (5%)

Query: 323 LSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKV 382
           L  +   A LN+ + +H+ I++     D  +   LI   S C     AL VF  + +  V
Sbjct: 23  LQDLPKCANLNQVKQLHAQIIRRNLHQDLHIAPKLISALSLCRQTNLALRVFNQVQEPNV 82

Query: 383 GHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNM 442
               ++I    ++    QA  +F++M R G+     T+  +L ACS    +   +   N 
Sbjct: 83  HLCNSLIRAHALNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGLSWLPVVKMMHN- 141

Query: 443 MINDYGIEPTIEHYGCLVDILCRTGYL--EEAKSTIESMPMRPNFVIWMSLLSGARNHGN 500
            I   G+   I     L+D   R G L   +A    E M  R + V W S+L G    G 
Sbjct: 142 HIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSER-DTVSWNSMLGGLVKAGE 200

Query: 501 -KDIGEYAANNLIKVAP--DTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548
            +D     A  L    P  D I    +L   YA   +  +  E+ E M +R
Sbjct: 201 LRD-----ARKLFDEMPQRDLISWNTMLDG-YARCREMSRAFELFEKMPER 245


>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 642

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 220/614 (35%), Positives = 351/614 (57%), Gaps = 41/614 (6%)

Query: 26  NILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHP 85
           ++L+   +  + +Q+ +  V T LI     SSRL++        +L Y  +I     ++P
Sbjct: 11  SLLEKCKSISQLKQIQSQMVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILFNT-RNP 69

Query: 86  SLVLYNLLIKCYVFNQRSHEALTLFCDLLD-RFLLPDNFTLPCVIKGAARLGAIKEGKQI 144
           +   +N+ I+ ++ ++   EA+ L+  +L      PDN+T P + K  ARL  I+ G +I
Sbjct: 70  NTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEI 129

Query: 145 HGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEV 204
            G V  LGF  D FV ++++ +    G++D  R++FD    +DLVSWN +I+GYV++G  
Sbjct: 130 LGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWA 189

Query: 205 EVAMKLFDEM------PDR----------------DLFSWT-----------------CL 225
             A+  + EM      PD                 DL   +                  L
Sbjct: 190 YEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANAL 249

Query: 226 VDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWN 285
           +D + KCG +E AR++F  M N+ +VSW  M+ GY ++G +D A +LFD+M  +D++ WN
Sbjct: 250 MDMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWN 309

Query: 286 SMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKN 345
           +MI GY    R  EAL L   M   ++ P++ T+VS LSA + L  L+ G W+H YI K+
Sbjct: 310 AMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKH 369

Query: 346 GFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLF 405
              ++  LGT LI MY+KCG I  A+ VF+ +  +    WTA+I GL +HG A  A+  F
Sbjct: 370 ELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYF 429

Query: 406 NKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCR 465
           ++M    + P  +TF+G+L+AC H GLV +GR+YF+ M + + + P ++HY C+VD+L R
Sbjct: 430 SEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGR 489

Query: 466 TGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVL 525
            G LEEA+  I+SMP+  + V+W +L    R HGN  +GE AA+ L+++ P   G YV+L
Sbjct: 490 AGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLL 549

Query: 526 SNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKL 585
           +N+Y  A  W +  + R++M++RG  K PG SSIE  G+++EF+V DKSHPQ+++I+  L
Sbjct: 550 ANMYGEAEMWKEAGKARKLMRQRGVEKTPGCSSIEVNGIVYEFIVRDKSHPQSEQIYECL 609

Query: 586 SEMRNKLKAAGHVP 599
            ++  +L+     P
Sbjct: 610 IQLTRQLELVECTP 623


>gi|302822426|ref|XP_002992871.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
 gi|300139319|gb|EFJ06062.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
          Length = 716

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 235/677 (34%), Positives = 367/677 (54%), Gaps = 29/677 (4%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           +E ++LH   + T       + + LL +Y      +L  A+ +F+  ++   L  ++ +I
Sbjct: 47  EEGRRLHEHLIITGFRTDIPLETALLQMYAK--CGSLDDAKRVFEG-MEIKDLFAWSSII 103

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
             Y    R   A+ L+  ++   + P+  T  C + G A +  + +G+ IH  +      
Sbjct: 104 AAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGGCASVAGLADGRAIHQRILASKVP 163

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
            D  +  SL++MY K  E+   R+VF+ M  +++ S+  +I  YV+ GE   A++LF  M
Sbjct: 164 QDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMISAYVQAGEHAEALELFSRM 223

Query: 215 P-----DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR----NLVSWNAMINGYMKAGD 265
                 + + +++  ++      G +E  R++   + +R    N+V  NA++  Y K G 
Sbjct: 224 SKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLASRGFDTNVVVQNALVTMYGKCGS 283

Query: 266 VDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSA 325
              A ++FD M  R++I+W SMIA Y  +G   EAL L + M   DV P+  +  SAL+A
Sbjct: 284 PVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALNLFKRM---DVEPSGVSFSSALNA 340

Query: 326 VAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHW 385
            A L  L++GR +H  +V+        + T L+ MY++CGS++ A  VF  +  +     
Sbjct: 341 CALLGALDEGREIHHRVVEANLA-SPQMETSLLSMYARCGSLDDARRVFNRMKTRDAFSC 399

Query: 386 TAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN 445
            AMI     HG   QAL ++ KM + G+    ITF+ VL ACSH  LV D R +   ++ 
Sbjct: 400 NAMIAAFTQHGRKKQALRIYRKMEQEGIPADGITFVSVLVACSHTSLVADCRDFLQSLVM 459

Query: 446 DYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGE 505
           D+G+ P +EHY C+VD+L R+G L +A+  +E+MP + + V WM+LLSG + HG+ D GE
Sbjct: 460 DHGVVPLVEHYLCMVDVLGRSGRLGDAEELVETMPYQADAVAWMTLLSGCKRHGDLDRGE 519

Query: 506 YAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVL 565
            AA  + ++AP     YV LSN+YAAA ++D    VR+ M++RG  +    S IE    L
Sbjct: 520 RAARKVFELAPAETLPYVFLSNMYAAAKRFDDARRVRKEMEERGVTRPVAVSYIEIDNEL 579

Query: 566 HEFVVGDKSHPQT-------DEIHSKLSEMRNKLKAAGHVPDTTQVLL---CIEDQKEKE 615
           H F  G +   Q        + + S L E+   +K AG+VPDT +V L    +  ++EK+
Sbjct: 580 HMFTSGGRDEQQEGHDGRTMERVRSLLVELLEPMKQAGYVPDTREVYLEQQGVTSEEEKQ 639

Query: 616 AELENHSERLAIAFGLINVK---SRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDN 672
             L  HSERLAIA+GLI  K      P+R+V + RVC+ CHS  KLLS I  + I VRD 
Sbjct: 640 RSLCFHSERLAIAYGLIAAKDPDDSRPLRVVNSHRVCSGCHSAIKLLSDITEKRIFVRDG 699

Query: 673 SRFHHFKNGSCSCKDFW 689
           SRFHHF+ G+CSC D W
Sbjct: 700 SRFHHFEKGACSCGDHW 716



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 123/419 (29%), Positives = 223/419 (53%), Gaps = 17/419 (4%)

Query: 93  LIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLG 152
           +I   V   R  +AL L+ ++ +R ++ D F +  ++    +L A++EG+++H  +   G
Sbjct: 1   MIAACVREGRPLQALELWGEMEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITG 60

Query: 153 FGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFD 212
           F  D  + ++L+ MYAK G +D  +RVF+ M+ KDL +W+ +I  Y + G  E+A+ L+ 
Sbjct: 61  FRTDIPLETALLQMYAKCGSLDDAKRVFEGMEIKDLFAWSSIIAAYARAGRGEMAVVLYR 120

Query: 213 EM----PDRDLFSWTCLVDGFSKCGKVEIAREIFYRM-----PNRNLVSWNAMINGYMKA 263
            M     + ++ ++ C + G +    +   R I  R+     P  +++  ++++N Y+K 
Sbjct: 121 RMIAEGVEPNVVTFACALGGCASVAGLADGRAIHQRILASKVPQDDVLQ-DSLLNMYLKC 179

Query: 264 GDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETM-LIGDVLPNDATLVSA 322
            ++  A ++F+ M+ R++ ++ +MI+ Y   G   EALEL   M  +  + PN  T  + 
Sbjct: 180 DEMVEARKVFEGMKARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATI 239

Query: 323 LSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKV 382
           L AV GL  L KGR +H ++   GF  + V+   L+ MY KCGS   A  VF +++ + V
Sbjct: 240 LGAVEGLGNLEKGRKVHRHLASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNV 299

Query: 383 GHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNM 442
             WT+MI     HG   +AL+LF    RM ++P+ ++F   LNAC+  G +++GR   + 
Sbjct: 300 ISWTSMIAAYAQHGNPQEALNLFK---RMDVEPSGVSFSSALNACALLGALDEGREIHHR 356

Query: 443 MINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNK 501
           ++      P +E    L+ +  R G L++A+     M  R  F    ++++    HG K
Sbjct: 357 VVEANLASPQME--TSLLSMYARCGSLDDARRVFNRMKTRDAFSC-NAMIAAFTQHGRK 412



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 119/266 (44%), Gaps = 4/266 (1%)

Query: 287 MIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNG 346
           MIA     GR ++ALEL   M    ++ +   + S ++A   L  L +GR +H +++  G
Sbjct: 1   MIAACVREGRPLQALELWGEMEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITG 60

Query: 347 FVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFN 406
           F  D  L T L+QMY+KCGS++ A  VF  +  K +  W+++I      G    A+ L+ 
Sbjct: 61  FRTDIPLETALLQMYAKCGSLDDAKRVFEGMEIKDLFAWSSIIAAYARAGRGEMAVVLYR 120

Query: 407 KMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRT 466
           +M   G++P  +TF   L  C+    + DGR     ++     +  +     L+++  + 
Sbjct: 121 RMIAEGVEPNVVTFACALGGCASVAGLADGRAIHQRILASKVPQDDVLQ-DSLLNMYLKC 179

Query: 467 GYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLS 526
             + EA+   E M  R N   + +++S     G         + + KV       Y   +
Sbjct: 180 DEMVEARKVFEGMKAR-NVRSYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFAT 238

Query: 527 NIYAAA--GQWDKVSEVREMMKKRGF 550
            + A    G  +K  +V   +  RGF
Sbjct: 239 ILGAVEGLGNLEKGRKVHRHLASRGF 264


>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
          Length = 606

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 238/649 (36%), Positives = 357/649 (55%), Gaps = 68/649 (10%)

Query: 12  IHALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRL-LSLYVDPHINN 70
           IH ++      L  ++L+  ++  E +Q+HA  +KTN        +R+ L     P   +
Sbjct: 19  IHHVKPQSSETLKIDLLRNFNSPFELRQVHAQIIKTNAPLSILPLTRVGLVCAFTP---S 75

Query: 71  LHYARSIFDRI-LQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVI 129
            HYA+ IF+ +  Q P   ++N  +K         +A+ LF  L    + P         
Sbjct: 76  FHYAQQIFECVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCP--------- 126

Query: 130 KGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLV 189
                                     D F  SS++       ++  GR            
Sbjct: 127 --------------------------DTFTCSSVLRACLNLLDLSNGR------------ 148

Query: 190 SWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRN 249
               ++ G V+K    V  +        +L+    +V  ++ CG++  AR +F +MP R+
Sbjct: 149 ----ILHGVVEK----VGFR-------SNLYLQNMIVHLYASCGEMGEARLLFEKMPQRD 193

Query: 250 LVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLI 309
           +V+WN MI   +K GD + A +LF  M  R++ +W SMIAGY   G+  EA+ L   M  
Sbjct: 194 VVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEE 253

Query: 310 GDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIES 369
             V  N+ T+V+ L+A A L  L+ G  +H Y  ++GF  +  +   LI MY KCG +E 
Sbjct: 254 AGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEE 313

Query: 370 ALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSH 429
           A  VF  + ++ V  W+AMI GL MHG A +AL LF+ M ++G++P  +TFIG+L+ACSH
Sbjct: 314 ACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSH 373

Query: 430 AGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWM 489
            GL+++GRR+F  M  DYGI P IEHYGC+VD+L R G L EA   I +MPM+PN V+W 
Sbjct: 374 MGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWG 433

Query: 490 SLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRG 549
           +LL   R H N ++ E A  +L+++ P   G YVVLSNIYA AG+W+  + VR+ MK R 
Sbjct: 434 ALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQ 493

Query: 550 FRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIE 609
            +K PG SSI   GV+HEFV G++SHP T++I  +  E+  +++  G+VP+T+ VLL IE
Sbjct: 494 VKKTPGWSSITVDGVVHEFVAGEESHPDTEQIFQRWEELLEEMRLKGYVPNTSVVLLDIE 553

Query: 610 DQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKL 658
            + EK   +  HSE+LA+ FGL+N  + +PIRI+KNLR+C DCHS  ++
Sbjct: 554 -EGEKVKFVSRHSEKLALVFGLMNTPAETPIRIMKNLRICEDCHSAFQI 601


>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Brachypodium distachyon]
          Length = 661

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 242/692 (34%), Positives = 358/692 (51%), Gaps = 39/692 (5%)

Query: 6   LQHSSPIHALQQHL--PSRLHW--NILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLS 61
           + HS+ ++   +H+  P   H   + LK        + LHA +V + L     ++S LL 
Sbjct: 1   MSHSNSLYHFLRHVSFPPDPHLLPSALKSCPAQPLARALHAAAVVSGLAEDPFVASSLLH 60

Query: 62  LYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPD 121
            Y+   +     ARS+FDR+ +  ++V ++ LI  Y     +  A  L   +    + P+
Sbjct: 61  SYI--RLGATGAARSVFDRMPEK-NVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPN 117

Query: 122 NFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFD 181
             T   ++ G  R G   +       +   GF  D   +S  +S      E+ +G++V  
Sbjct: 118 VITWNGLVSGLNRSGRALDAVTALVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQVH- 176

Query: 182 AMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREI 241
                          GYV K    +           D    T L+D + KCG+ +    +
Sbjct: 177 ---------------GYVVKAGCRL-----------DACVVTALIDMYGKCGRADEIVRV 210

Query: 242 FYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIR----DLITWNSMIAGYELNGRF 297
           F+   + ++ S NA++ G  +   V  A  LF +   R    ++++W S++A    NGR 
Sbjct: 211 FHESSHMDVASCNALVAGLSRNAQVSEALLLFREFICRGVELNVVSWTSIVACCVQNGRD 270

Query: 298 MEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLL 357
           +EA++L  TM    V PN  T+   L A A +A L  GR  H + ++ GF+ D  +G+ L
Sbjct: 271 LEAVDLFRTMQSIGVEPNSVTIPCVLPAFANVAALMHGRSAHCFSLRKGFLHDVYVGSAL 330

Query: 358 IQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA 417
           + MY+KCG    A T+F A+  + V  W AMI G  MHG A  A+ LF  M +   KP  
Sbjct: 331 VDMYAKCGKARHARTIFDAMPSRNVVSWNAMIGGYAMHGDAANAVQLFCSMQKCKQKPDL 390

Query: 418 ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIE 477
           +TF  VL ACS AGL  +GRRYFN M   +GI P +EHY C+V +L R+G L+EA   I 
Sbjct: 391 VTFTCVLGACSQAGLTEEGRRYFNEMQQGHGISPRMEHYACMVTLLGRSGKLDEAYDLIN 450

Query: 478 SMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDK 537
            MP  P+  IW SLL   R +GN  + E AA  L ++ P   G YV+LSNIYA+   WD 
Sbjct: 451 EMPFEPDSCIWGSLLGSCRVYGNVLLAEVAAEKLFQLEPGNAGNYVLLSNIYASKKMWDG 510

Query: 538 VSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGH 597
           V+ VR+ MK  G +K+ G S IE +  +H  + GD SHP    I  KL+++  ++   G 
Sbjct: 511 VNRVRDEMKNMGLKKEKGCSWIEIKNKVHMLLAGDNSHPMMTAITEKLNQLTIEMNRLGF 570

Query: 598 VPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTK 657
            P    VL  +E+Q EK+  L  HSE+LA+A GLI+ +  +P+R++KNLR+C DCH   K
Sbjct: 571 APSRDFVLHDVEEQ-EKDNILAVHSEKLAVALGLISTRPGTPLRVIKNLRICGDCHEAMK 629

Query: 658 LLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            +S    REI VRD +RFHHFK+G CSC D+W
Sbjct: 630 FISSFEQREISVRDTNRFHHFKDGKCSCGDYW 661


>gi|242088929|ref|XP_002440297.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
 gi|241945582|gb|EES18727.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
          Length = 869

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 228/658 (34%), Positives = 363/658 (55%), Gaps = 15/658 (2%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +++HA  ++        + + L+++Y      ++  AR +FD +      + +N +I  +
Sbjct: 215 REVHAHVLRFGFAEEVDVLNALMTMYAK--CGDVVAARKVFDSMAVM-DCISWNAMIAGH 271

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
             N   +  L LF  +L   + P+  T+  V   +  L  I   K++HGL  K GF  D 
Sbjct: 272 FENGECNAGLELFLTMLQDEVQPNLMTITSVTVASGLLSDITFAKEMHGLAVKRGFATDV 331

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP-- 215
              +SL+ MYA  G +   R VF  MD +D +SW  +I GY K G  + A++++  M   
Sbjct: 332 AFCNSLIQMYASLGMMGQARTVFSRMDTRDAMSWTAMISGYEKNGFPDKALEVYALMEVN 391

Query: 216 --DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSW----NAMINGYMKAGDVDSA 269
               D  +    +   +  G +++  ++     ++  +S+    NA++  Y K+  +D A
Sbjct: 392 NVSPDDITIASALAACACLGSLDVGVKLHELAESKGFMSYVVVTNALLEMYAKSKRIDKA 451

Query: 270 CELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGL 329
            E+F  M  +D+++W+SMIAG+  N R  EAL     ML  DV PN  T ++AL+A A  
Sbjct: 452 IEVFKCMPEKDVVSWSSMIAGFCFNHRNFEALYYFRHML-ADVKPNSVTFIAALAACAAT 510

Query: 330 AVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMI 389
             L  G+ +H+++++ G   +G L   LI +Y KCG    A   F A   K V  W  MI
Sbjct: 511 GALRSGKEIHAHVLRCGIAYEGYLPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSWNIMI 570

Query: 390 VGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGI 449
            G   HG    AL  FN+M ++G  P  +TF+ +L ACS  G+V++G   F+ M + Y I
Sbjct: 571 AGFVAHGNGETALSFFNQMVKIGECPDEVTFVALLCACSRGGMVSEGWELFHSMTDKYSI 630

Query: 450 EPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAAN 509
            P ++HY C+VD+L R G L EA + I  MP+ P+  +W +LL+G R H + ++GE AA 
Sbjct: 631 VPNLKHYACMVDLLSRVGQLTEAYNFINEMPITPDAAVWGALLNGCRIHRHVELGELAAK 690

Query: 510 NLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFV 569
            ++++ P+  G +V+L ++YA AG WDK++ VR+ M+++G   D G S +E +GV+H F+
Sbjct: 691 YVLELEPNDAGYHVLLCDLYADAGIWDKLARVRKTMREKGLDHDSGCSWVEVKGVVHAFL 750

Query: 570 VGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAF 629
             D+SHPQ  EI++ L  +  ++KA+G  P  +      ED+  K+     HSERLA+AF
Sbjct: 751 TDDESHPQIREINTVLEGIYERMKASGCAPVESH---SPEDKVLKDDIFCGHSERLAVAF 807

Query: 630 GLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKD 687
           GLIN    + I + KN   C  CH + K++S I  R+IIVRD+ + HHFK+GSCSC D
Sbjct: 808 GLINTTPGTSISVTKNQYTCQSCHRILKMISYIVRRDIIVRDSKQVHHFKDGSCSCGD 865



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 129/445 (28%), Positives = 226/445 (50%), Gaps = 23/445 (5%)

Query: 90  YNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVF 149
           +N+++  Y       EAL L+  ++   + PD +T PCV++    +   + G+++H  V 
Sbjct: 163 WNVMVGGYGKAGLLEEALDLYHRMMWAGVRPDVYTFPCVLRSCGGVPDWRMGREVHAHVL 222

Query: 150 KLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMK 209
           + GF  +  VL++L++MYAK G++   R+VFD+M   D +SWN +I G+ + GE    ++
Sbjct: 223 RFGFAEEVDVLNALMTMYAKCGDVVAARKVFDSMAVMDCISWNAMIAGHFENGECNAGLE 282

Query: 210 LF-----DEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS----WNAMINGY 260
           LF     DE+   +L + T +         +  A+E+      R   +     N++I  Y
Sbjct: 283 LFLTMLQDEV-QPNLMTITSVTVASGLLSDITFAKEMHGLAVKRGFATDVAFCNSLIQMY 341

Query: 261 MKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLV 320
              G +  A  +F  M+ RD ++W +MI+GYE NG   +ALE+   M + +V P+D T+ 
Sbjct: 342 ASLGMMGQARTVFSRMDTRDAMSWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDITIA 401

Query: 321 SALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKK 380
           SAL+A A L  L+ G  +H      GF+   V+   L++MY+K   I+ A+ VF+ + +K
Sbjct: 402 SALAACACLGSLDVGVKLHELAESKGFMSYVVVTNALLEMYAKSKRIDKAIEVFKCMPEK 461

Query: 381 KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYF 440
            V  W++MI G   +    +AL  F  M    +KP ++TFI  L AC+  G +  G+   
Sbjct: 462 DVVSWSSMIAGFCFNHRNFEALYYFRHML-ADVKPNSVTFIAALAACAATGALRSGKE-- 518

Query: 441 NMMINDYGIEPTIEHYG----CLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGAR 496
              I+ + +   I + G     L+D+  + G    A +   +   + + V W  +++G  
Sbjct: 519 ---IHAHVLRCGIAYEGYLPNALIDLYVKCGQTGYAWAQFCAHGAK-DVVSWNIMIAGFV 574

Query: 497 NHGNKDIGEYAANNLIKVA--PDTI 519
            HGN +      N ++K+   PD +
Sbjct: 575 AHGNGETALSFFNQMVKIGECPDEV 599



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 113/371 (30%), Positives = 185/371 (49%), Gaps = 17/371 (4%)

Query: 161 SSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM----PD 216
           ++++SM  +FGE     RVF  M ++D+ SWN ++ GY K G +E A+ L+  M      
Sbjct: 133 NAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKAGLLEEALDLYHRMMWAGVR 192

Query: 217 RDLFSWTCLVDGFSKCGKV---EIAREIFYRMPNRNLVS----WNAMINGYMKAGDVDSA 269
            D++++ C++     CG V    + RE+   +            NA++  Y K GDV +A
Sbjct: 193 PDVYTFPCVL---RSCGGVPDWRMGREVHAHVLRFGFAEEVDVLNALMTMYAKCGDVVAA 249

Query: 270 CELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGL 329
            ++FD M + D I+WN+MIAG+  NG     LEL  TML  +V PN  T+ S   A   L
Sbjct: 250 RKVFDSMAVMDCISWNAMIAGHFENGECNAGLELFLTMLQDEVQPNLMTITSVTVASGLL 309

Query: 330 AVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMI 389
           + +   + MH   VK GF  D      LIQMY+  G +  A TVF  +  +    WTAMI
Sbjct: 310 SDITFAKEMHGLAVKRGFATDVAFCNSLIQMYASLGMMGQARTVFSRMDTRDAMSWTAMI 369

Query: 390 VGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGI 449
            G   +G   +AL+++  M    + P  IT    L AC+  G ++ G +  + +    G 
Sbjct: 370 SGYEKNGFPDKALEVYALMEVNNVSPDDITIASALAACACLGSLDVGVK-LHELAESKGF 428

Query: 450 EPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG-ARNHGNKDIGEYAA 508
              +     L+++  ++  +++A    + MP + + V W S+++G   NH N +   Y  
Sbjct: 429 MSYVVVTNALLEMYAKSKRIDKAIEVFKCMPEK-DVVSWSSMIAGFCFNHRNFEALYYFR 487

Query: 509 NNLIKVAPDTI 519
           + L  V P+++
Sbjct: 488 HMLADVKPNSV 498



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 142/301 (47%), Gaps = 9/301 (2%)

Query: 254 NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL 313
           NAM++  ++ G+   A  +F  M  RD+ +WN M+ GY   G   EAL+L   M+   V 
Sbjct: 133 NAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKAGLLEEALDLYHRMMWAGVR 192

Query: 314 PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTV 373
           P+  T    L +  G+     GR +H+++++ GF  +  +   L+ MY+KCG + +A  V
Sbjct: 193 PDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFAEEVDVLNALMTMYAKCGDVVAARKV 252

Query: 374 FRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLV 433
           F +++      W AMI G   +G     L+LF  M +  ++P  +T   V  A   +GL+
Sbjct: 253 FDSMAVMDCISWNAMIAGHFENGECNAGLELFLTMLQDEVQPNLMTITSVTVA---SGLL 309

Query: 434 ND--GRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSL 491
           +D    +  + +    G    +     L+ +    G + +A++    M  R + + W ++
Sbjct: 310 SDITFAKEMHGLAVKRGFATDVAFCNSLIQMYASLGMMGQARTVFSRMDTR-DAMSWTAM 368

Query: 492 LSGARNHG--NKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRG 549
           +SG   +G  +K +  YA   +  V+PD I          A  G  D   ++ E+ + +G
Sbjct: 369 ISGYEKNGFPDKALEVYALMEVNNVSPDDI-TIASALAACACLGSLDVGVKLHELAESKG 427

Query: 550 F 550
           F
Sbjct: 428 F 428



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 99/208 (47%), Gaps = 15/208 (7%)

Query: 353 LGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG 412
           LG  ++ M  + G    A  VF  + ++ V  W  M+ G G  G+  +ALDL+++M   G
Sbjct: 131 LGNAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKAGLLEEALDLYHRMMWAG 190

Query: 413 MKPTAITFIGVLNACSHAGLVNDGR--RYFNMMINDYGIEPTIEHYGCLVDILCRTGYLE 470
           ++P   TF  VL +C   G V D R  R  +  +  +G    ++    L+ +  + G + 
Sbjct: 191 VRPDVYTFPCVLRSC---GGVPDWRMGREVHAHVLRFGFAEEVDVLNALMTMYAKCGDVV 247

Query: 471 EAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIK--VAPDTIGCYVVLSNI 528
            A+   +SM +  + + W ++++G   +G  + G      +++  V P+ +     ++++
Sbjct: 248 AARKVFDSMAVM-DCISWNAMIAGHFENGECNAGLELFLTMLQDEVQPNLM----TITSV 302

Query: 529 YAAAGQWDKVSEVREM---MKKRGFRKD 553
             A+G    ++  +EM     KRGF  D
Sbjct: 303 TVASGLLSDITFAKEMHGLAVKRGFATD 330


>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 605

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/522 (39%), Positives = 316/522 (60%), Gaps = 8/522 (1%)

Query: 176 GRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSK 231
            R +FDAM + D+V +N +  GY +         LF E+ + DL    +++  L+   + 
Sbjct: 84  ARHLFDAMSEPDIVIFNSIARGYSRSTNPLEVFNLFVEILEDDLLPDNYTFPSLLKACAV 143

Query: 232 CGKVEIAREI----FYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSM 287
              +E  R++         + N+     +IN Y +  DVD+A  +FD +    ++ +N+M
Sbjct: 144 AKALEEGRQLHCLSMKLGVDDNVYVCPTLINMYTECEDVDAARCVFDRIVEPCVVCYNAM 203

Query: 288 IAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGF 347
           I GY    R  EAL L   M   ++ PN+ TL+S LS+ A L  L+ G+W+H Y  K+GF
Sbjct: 204 ITGYARRNRPNEALSLFREMQGKNLKPNEITLLSVLSSCALLGSLDLGKWIHEYAKKHGF 263

Query: 348 VVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNK 407
                + T LI M++KCGS++ A+++F  +  K    W+AMIV    HG A  ++ +F +
Sbjct: 264 CKYVKVNTALIDMFAKCGSLDDAVSIFENMRYKDTQAWSAMIVAYANHGQAENSMLMFER 323

Query: 408 MCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTG 467
           M    ++P  ITF+G+LNACSH GLV +GR YF+ M++++GI P+I+HYG +VD+L R G
Sbjct: 324 MRSENVQPDEITFLGLLNACSHTGLVEEGREYFSWMVHEFGIVPSIKHYGSMVDLLGRAG 383

Query: 468 YLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSN 527
           +LE+A   I+ +P+ P  ++W  LL+   +H N ++ E  +  ++++     G YV+LSN
Sbjct: 384 HLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLELAEKVSERILELDDSHGGDYVILSN 443

Query: 528 IYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSE 587
           +YA   +W+ V  +R++MK R   K PG SSIE   V+HEF  GD     T ++H  L E
Sbjct: 444 LYARNKKWEAVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDE 503

Query: 588 MRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLR 647
           M  +LK AG+VPDT+ V+      +EKE  L  HSE+LAIAFGL+N    + IR+VKNLR
Sbjct: 504 MVKELKLAGYVPDTSMVVHADMGDQEKEITLRYHSEKLAIAFGLLNTPPGTTIRVVKNLR 563

Query: 648 VCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           VC DCHS  KL+S I+ R++++RD  RFHHF++G CSC+DFW
Sbjct: 564 VCRDCHSAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCRDFW 605



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 101/406 (24%), Positives = 199/406 (49%), Gaps = 44/406 (10%)

Query: 32  STHKETQQLHALSVKTNLIYHSGISSRLLSLYVD-PHINNLHYARSIFDRILQHPSLVLY 90
           ++ +E  Q+ A ++K++       +++L++   + P  +++ YAR +FD  +  P +V++
Sbjct: 42  NSERELMQIQAYAIKSHQ-EDVSFNTKLINFCTESPTESSMSYARHLFD-AMSEPDIVIF 99

Query: 91  NLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFK 150
           N + + Y  +    E   LF ++L+  LLPDN+T P ++K  A   A++EG+Q+H L  K
Sbjct: 100 NSIARGYSRSTNPLEVFNLFVEILEDDLLPDNYTFPSLLKACAVAKALEEGRQLHCLSMK 159

Query: 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
           LG   + +V  +L++MY +  ++D  R VFD + +  +V +N +I GY ++     A+ L
Sbjct: 160 LGVDDNVYVCPTLINMYTECEDVDAARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSL 219

Query: 211 FDEMPDRDL-FSWTCLVDGFSKC---GKVEIAREIFYRMPNRNLVSW----NAMINGYMK 262
           F EM  ++L  +   L+   S C   G +++ + I           +     A+I+ + K
Sbjct: 220 FREMQGKNLKPNEITLLSVLSSCALLGSLDLGKWIHEYAKKHGFCKYVKVNTALIDMFAK 279

Query: 263 AGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSA 322
            G +D A  +F++M  +D   W++MI  Y  +G+   ++ + E M   +V P++ T +  
Sbjct: 280 CGSLDDAVSIFENMRYKDTQAWSAMIVAYANHGQAENSMLMFERMRSENVQPDEITFLGL 339

Query: 323 LSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKV 382
           L+A +   ++ +GR   S++V    +V                                +
Sbjct: 340 LNACSHTGLVEEGREYFSWMVHEFGIV------------------------------PSI 369

Query: 383 GHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACS 428
            H+ +M+  LG  G    A +  +K   + + PT + +  +L ACS
Sbjct: 370 KHYGSMVDLLGRAGHLEDAYEFIDK---LPISPTPMLWRILLAACS 412



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 125/256 (48%), Gaps = 6/256 (2%)

Query: 251 VSWNAMINGYMKAGDVDS----ACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLET 306
           VS+N  +  +      +S    A  LFD M   D++ +NS+  GY  +   +E   L   
Sbjct: 62  VSFNTKLINFCTESPTESSMSYARHLFDAMSEPDIVIFNSIARGYSRSTNPLEVFNLFVE 121

Query: 307 MLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGS 366
           +L  D+LP++ T  S L A A    L +GR +H   +K G   +  +   LI MY++C  
Sbjct: 122 ILEDDLLPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGVDDNVYVCPTLINMYTECED 181

Query: 367 IESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNA 426
           +++A  VF  I +  V  + AMI G        +AL LF +M    +KP  IT + VL++
Sbjct: 182 VDAARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKNLKPNEITLLSVLSS 241

Query: 427 CSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFV 486
           C+  G ++ G ++ +     +G    ++    L+D+  + G L++A S  E+M  + +  
Sbjct: 242 CALLGSLDLG-KWIHEYAKKHGFCKYVKVNTALIDMFAKCGSLDDAVSIFENMRYK-DTQ 299

Query: 487 IWMSLLSGARNHGNKD 502
            W +++    NHG  +
Sbjct: 300 AWSAMIVAYANHGQAE 315


>gi|115446651|ref|NP_001047105.1| Os02g0552100 [Oryza sativa Japonica Group]
 gi|46389885|dbj|BAD15486.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536636|dbj|BAF09019.1| Os02g0552100 [Oryza sativa Japonica Group]
 gi|125582482|gb|EAZ23413.1| hypothetical protein OsJ_07107 [Oryza sativa Japonica Group]
 gi|215712305|dbj|BAG94432.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 586

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 201/465 (43%), Positives = 296/465 (63%), Gaps = 5/465 (1%)

Query: 229 FSKCGKVEIAREIFYRM-PNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSM 287
           +   G ++ AR + Y      ++VSWN M++GY K GD+ +A E+F  M  R+L++W++M
Sbjct: 123 YCSLGLLDRARRVLYSGGAALDVVSWNTMVSGYGKGGDLGAAREVFARMPERNLVSWSAM 182

Query: 288 IAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGF 347
           +      G F EAL + + M+  +  P+   LVS L A A L  + +GRW+H Y+    F
Sbjct: 183 VDACVRAGEFGEALWVFDRMMREEFRPDVVVLVSVLKACAHLGAVERGRWVHRYLETGSF 242

Query: 348 ---VVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDL 404
                + +L T L+ MY KCG +E A  VF  + ++ V  W AMI GL M+G   +AL+L
Sbjct: 243 GGRRGNLMLETALVDMYCKCGCMEDAWQVFDGVHRRDVVLWNAMIGGLAMNGYGERALEL 302

Query: 405 FNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILC 464
           F +M + G  P   TFI VL AC+H G V++G+R F  M  DYGI+P  EHYGCL D+L 
Sbjct: 303 FRRMLQKGFMPNESTFIAVLCACTHTGRVDEGKRVFKSM-QDYGIKPQREHYGCLADLLG 361

Query: 465 RTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVV 524
           R G +EEA++ +  MPM P+   W +L+S  + H + ++GE     LI++ P   G YVV
Sbjct: 362 RAGNVEEAEALLLDMPMEPHASQWGALMSSCQMHNDINVGERVGKRLIELEPYDGGRYVV 421

Query: 525 LSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSK 584
           L N+YA  G+W++   +R+MM+ RG +K+ G S IE  G++HEF+ GD  HP T +I++ 
Sbjct: 422 LFNLYAVNGRWEEARTIRQMMEDRGAKKETGLSFIELNGLVHEFISGDTRHPLTRKIYAL 481

Query: 585 LSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVK 644
           L ++  +L+  G+V DT+QV++ ++D+++K   L  HSERLA+AFG++N+    PIRIVK
Sbjct: 482 LEDIERRLQLIGYVKDTSQVIMDMDDEEDKGIALSYHSERLALAFGILNIPQGVPIRIVK 541

Query: 645 NLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           NLRVC DCH  +KL+S +Y REIIVRD  RFH F++G CSC D+W
Sbjct: 542 NLRVCRDCHVHSKLVSKLYEREIIVRDRHRFHVFRDGVCSCNDYW 586



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 130/295 (44%), Gaps = 52/295 (17%)

Query: 149 FKLGFGFDKFVLSSLVSMYAKFGEIDLGRRV-FDAMDDKDLVSWNCLIDGYVKKGEVEVA 207
           FK G      V +SL+ +Y   G +D  RRV +      D+VSWN ++ GY K G++  A
Sbjct: 105 FKCGALAHPVVTNSLLKLYCSLGLLDRARRVLYSGGAALDVVSWNTMVSGYGKGGDLGAA 164

Query: 208 MKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR------------------- 248
            ++F  MP+R+L SW+ +VD   + G+   A  +F RM                      
Sbjct: 165 REVFARMPERNLVSWSAMVDACVRAGEFGEALWVFDRMMREEFRPDVVVLVSVLKACAHL 224

Query: 249 -----------------------NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWN 285
                                  NL+   A+++ Y K G ++ A ++FD +  RD++ WN
Sbjct: 225 GAVERGRWVHRYLETGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVFDGVHRRDVVLWN 284

Query: 286 SMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRW----MHSY 341
           +MI G  +NG    ALEL   ML    +PN++T ++ L A      +++G+     M  Y
Sbjct: 285 AMIGGLAMNGYGERALELFRRMLQKGFMPNESTFIAVLCACTHTGRVDEGKRVFKSMQDY 344

Query: 342 IVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS-KKKVGHWTAMIVGLGMH 395
            +K      G L  LL     + G++E A  +   +  +     W A++    MH
Sbjct: 345 GIKPQREHYGCLADLL----GRAGNVEEAEALLLDMPMEPHASQWGALMSSCQMH 395



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 116/240 (48%), Gaps = 17/240 (7%)

Query: 69  NNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCV 128
            +L  AR +F R+ +  +LV ++ ++   V      EAL +F  ++     PD   L  V
Sbjct: 159 GDLGAAREVFARMPER-NLVSWSAMVDACVRAGEFGEALWVFDRMMREEFRPDVVVLVSV 217

Query: 129 IKGAARLGAIKEGKQIHGLVFKLGFGFDKFVL---SSLVSMYAKFGEIDLGRRVFDAMDD 185
           +K  A LGA++ G+ +H  +    FG  +  L   ++LV MY K G ++   +VFD +  
Sbjct: 218 LKACAHLGAVERGRWVHRYLETGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVFDGVHR 277

Query: 186 KDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLF----SWTCLVDGFSKCGKVEIAREI 241
           +D+V WN +I G    G  E A++LF  M  +       ++  ++   +  G+V+  + +
Sbjct: 278 RDVVLWNAMIGGLAMNGYGERALELFRRMLQKGFMPNESTFIAVLCACTHTGRVDEGKRV 337

Query: 242 FYRM------PNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLIT-WNSMIAGYELN 294
           F  M      P R    +  + +   +AG+V+ A  L  DM +    + W ++++  +++
Sbjct: 338 FKSMQDYGIKPQRE--HYGCLADLLGRAGNVEEAEALLLDMPMEPHASQWGALMSSCQMH 395


>gi|302758830|ref|XP_002962838.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
 gi|300169699|gb|EFJ36301.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
          Length = 652

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 218/618 (35%), Positives = 346/618 (55%), Gaps = 11/618 (1%)

Query: 82  LQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEG 141
           +Q  ++  + +++  +  N+        F  +L + + P    +   +        I  G
Sbjct: 36  IQSKNVFSWTMMLAAFAENRDFDRCWLFFRGMLLQGINPGEVGISIFLSACTDAREITIG 95

Query: 142 KQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKK 201
           + I   +   G   +  V ++LVS+Y K G       VF  M  +D+V+W+ ++  Y + 
Sbjct: 96  RSIQLAILGTGIEEESIVQTALVSLYGKLGHCTDAASVFLRMSHRDVVAWSAMVAAYARN 155

Query: 202 GEVEVAMKLFDEMP-DRDLFSWTCLVDGFSKCGKVEIARE---IFYRMPNRNL----VSW 253
           G    A+ LF +M  D    +   LV G   C  +   R    +  R+  + +    V  
Sbjct: 156 GHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRSGALMHQRVEAQGIQSGVVVG 215

Query: 254 NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL 313
            A++N Y K G +++A E F  +  ++++ W+++ A Y  N R  +A+ +L  M +  + 
Sbjct: 216 TALVNLYGKCGRIEAAAEAFGQIVEKNVVAWSAISAAYARNDRNRDAIRVLHRMDLEGLA 275

Query: 314 PNDATLVSALSAVAGLAVLNKGRWMHS--YIVKNGFVVDGVLGTLLIQMYSKCGSIESAL 371
           PN  T VS L A A +A L +GR +H   +++  G   D  + T L+ MYSKCG++  A 
Sbjct: 276 PNSTTFVSVLDACAAIAALKQGRRIHERIHVLGGGLESDVYVLTALVNMYSKCGNLALAG 335

Query: 372 TVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAG 431
            +F  I+   +  W ++I     HG   +AL+LF +M   G++PT ITF  VL ACSHAG
Sbjct: 336 NMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFERMRLEGLQPTIITFTSVLFACSHAG 395

Query: 432 LVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSL 491
           +++ GR++F   I D+GI P  EH+GC+VD+L R G++ +++  +  MP  P+ V WM+ 
Sbjct: 396 MLDQGRKHFVSFIGDHGIFPEAEHFGCMVDLLGRAGWIVDSEDLLLHMPFEPHPVAWMAF 455

Query: 492 LSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFR 551
           L   R + N D   +AA NL ++ P     YV+LSN+YA AG+W  V+ +R+ M+     
Sbjct: 456 LGACRTYRNMDGAIWAAENLFQLDPRKRAPYVLLSNMYAKAGRWSDVARMRQAMQLFMTV 515

Query: 552 KDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQ 611
           K+ G S IE +  +HEF+ GD  HP+  EIH++L  +   +KAAG+VPDT  VL  ++ Q
Sbjct: 516 KEAGRSWIEVKDRVHEFISGDLDHPRIGEIHAELQRLTKLMKAAGYVPDTEMVLHDVK-Q 574

Query: 612 KEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRD 671
           + KE  +  HSE+LA+AF L+     SPIR+VKNLRVCNDCH+ +K +S + NREI+VRD
Sbjct: 575 EVKETMVGYHSEKLAMAFALLTTPEGSPIRVVKNLRVCNDCHTASKFISKLVNREIVVRD 634

Query: 672 NSRFHHFKNGSCSCKDFW 689
            +RFH F+NG+CSC D+W
Sbjct: 635 CNRFHRFQNGACSCGDYW 652



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 96/362 (26%), Positives = 168/362 (46%), Gaps = 10/362 (2%)

Query: 150 KLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMK 209
           +LG+  ++F+ + L+ +Y K    D    VF  +  K++ SW  ++  + +  + +    
Sbjct: 3   ELGWIRNRFLCNLLIDLYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFAENRDFDRCWL 62

Query: 210 LFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNRNL----VSWNAMINGYM 261
            F  M  + +       +  +   +   ++ I R I   +    +    +   A+++ Y 
Sbjct: 63  FFRGMLLQGINPGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSLYG 122

Query: 262 KAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVS 321
           K G    A  +F  M  RD++ W++M+A Y  NG   EAL L   M +  V PN  TLVS
Sbjct: 123 KLGHCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVS 182

Query: 322 ALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKK 381
            L A A L  L  G  MH  +   G     V+GT L+ +Y KCG IE+A   F  I +K 
Sbjct: 183 GLDACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQIVEKN 242

Query: 382 VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR-YF 440
           V  W+A+      +     A+ + ++M   G+ P + TF+ VL+AC+    +  GRR + 
Sbjct: 243 VVAWSAISAAYARNDRNRDAIRVLHRMDLEGLAPNSTTFVSVLDACAAIAALKQGRRIHE 302

Query: 441 NMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGN 500
            + +   G+E  +     LV++  + G L  A +  + +    + V+W SL++    HG 
Sbjct: 303 RIHVLGGGLESDVYVLTALVNMYSKCGNLALAGNMFDKIA-HLDLVLWNSLIATNAQHGQ 361

Query: 501 KD 502
            +
Sbjct: 362 TE 363



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 80/176 (45%), Gaps = 4/176 (2%)

Query: 346 GFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLF 405
           G++ +  L  LLI +Y+KC   + AL VF  I  K V  WT M+     +    +    F
Sbjct: 5   GWIRNRFLCNLLIDLYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFAENRDFDRCWLFF 64

Query: 406 NKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCR 465
             M   G+ P  +     L+AC+ A  +  GR    + I   GIE        LV +  +
Sbjct: 65  RGMLLQGINPGEVGISIFLSACTDAREITIGRS-IQLAILGTGIEEESIVQTALVSLYGK 123

Query: 466 TGYLEEAKSTIESMPMRPNFVIWMSLLSG-ARN-HGNKDIGEYAANNLIKVAPDTI 519
            G+  +A S    M  R + V W ++++  ARN H  + +G +   +L  VAP+ +
Sbjct: 124 LGHCTDAASVFLRMSHR-DVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKV 178


>gi|449453904|ref|XP_004144696.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 840

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 227/660 (34%), Positives = 353/660 (53%), Gaps = 46/660 (6%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           + +H  ++K  L  +  +++ L+ +Y       L  A  +F  +    + V +  ++  Y
Sbjct: 154 KMIHCYAIKIQLEANIFVATGLVDMY--SKCKCLLEAEYLFFSLPDRKNYVQWTAMLTGY 211

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
             N  S +A+  F ++ ++ +  ++FT P ++     + A   G+Q+HG +   GFG + 
Sbjct: 212 AQNGESLKAIQCFKEMRNQGMESNHFTFPSILTACTSISAYAFGRQVHGCIIWSGFGPNV 271

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
           +V S+LV MYAK G++   R + D M+  D+V WN +I G V  G +E A+ LF +M +R
Sbjct: 272 YVQSALVDMYAKCGDLASARMILDTMEIDDVVCWNSMIVGCVTHGYMEEALVLFHKMHNR 331

Query: 218 DL----FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSW----NAMINGYMKAGDVDSA 269
           D+    F++  ++   + C  ++I   +          +     NA+++ Y K G++  A
Sbjct: 332 DIRIDDFTYPSVLKSLASCKNLKIGESVHSLTIKTGFDACKTVSNALVDMYAKQGNLSCA 391

Query: 270 CELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGL 329
            ++F+ +  +D+I+W S++ GY  NG   +AL+L   M    V  +   +    SA A L
Sbjct: 392 LDVFNKILDKDVISWTSLVTGYVHNGFHEKALQLFCDMRTARVDLDQFVVACVFSACAEL 451

Query: 330 AVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMI 389
            V+  GR +H+  +K+           LI MY+KCG +E A+ VF ++  + V  WTA+I
Sbjct: 452 TVIEFGRQVHANFIKSSAGSLLSAENSLITMYAKCGCLEDAIRVFDSMETRNVISWTAII 511

Query: 390 VGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGI 449
           VG   +G                                   LV  G+ YF  M   YGI
Sbjct: 512 VGYAQNG-----------------------------------LVETGQSYFESMEKVYGI 536

Query: 450 EPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAAN 509
           +P  +HY C++D+L R G + EA+  +  M + P+  IW SLLS  R HGN ++GE A  
Sbjct: 537 KPASDHYACMIDLLGRAGKINEAEHLLNRMDVEPDATIWKSLLSACRVHGNLELGERAGK 596

Query: 510 NLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFV 569
           NLIK+ P     YV+LSN+++ AG+W+  + +R  MK  G  K+PG S IE +  +H F+
Sbjct: 597 NLIKLEPSNSLPYVLLSNMFSVAGRWEDAAHIRRAMKTMGINKEPGYSWIEMKSQVHTFI 656

Query: 570 VGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAF 629
             D+SHP   EI+SK+ EM   +K AGHVPD    L  + D++ KE  L  HSE+LA+AF
Sbjct: 657 SEDRSHPLAAEIYSKIDEMMILIKEAGHVPDMNFALRDM-DEEAKERSLAYHSEKLAVAF 715

Query: 630 GLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           GL+ V   +PIRI KNLRVC DCHS  K +S I+ R II+RD + FHHF  G CSC DFW
Sbjct: 716 GLLTVAKGAPIRIFKNLRVCGDCHSAMKYISSIFKRHIILRDLNCFHHFIEGKCSCGDFW 775



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 137/510 (26%), Positives = 235/510 (46%), Gaps = 27/510 (5%)

Query: 59  LLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFL 118
           ++S Y +  + NL  AR +F+      S+  ++ L+  Y  N    E L  F  +     
Sbjct: 74  MISAYAN--LGNLVEARKLFNETPIKNSIT-WSSLVSGYCKNGCEVEGLRQFSQMWSDGQ 130

Query: 119 LPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRR 178
            P  +TL  V++  + L  +  GK IH    K+    + FV + LV MY+K   +     
Sbjct: 131 KPSQYTLGSVLRACSTLSLLHTGKMIHCYAIKIQLEANIFVATGLVDMYSKCKCLLEAEY 190

Query: 179 VFDAMDD-KDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCG 233
           +F ++ D K+ V W  ++ GY + GE   A++ F EM ++ +    F++  ++   +   
Sbjct: 191 LFFSLPDRKNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILTACTSIS 250

Query: 234 KVEIARE----IFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIA 289
                R+    I +     N+   +A+++ Y K GD+ SA  + D MEI D++ WNSMI 
Sbjct: 251 AYAFGRQVHGCIIWSGFGPNVYVQSALVDMYAKCGDLASARMILDTMEIDDVVCWNSMIV 310

Query: 290 GYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVV 349
           G   +G   EAL L   M   D+  +D T  S L ++A    L  G  +HS  +K GF  
Sbjct: 311 GCVTHGYMEEALVLFHKMHNRDIRIDDFTYPSVLKSLASCKNLKIGESVHSLTIKTGFDA 370

Query: 350 DGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMC 409
              +   L+ MY+K G++  AL VF  I  K V  WT+++ G   +G   +AL LF  M 
Sbjct: 371 CKTVSNALVDMYAKQGNLSCALDVFNKILDKDVISWTSLVTGYVHNGFHEKALQLFCDMR 430

Query: 410 RMGMKPTAITFIGVLNACSHAGLVNDGRR-YFNMMINDYGIEPTIEHYGCLVDILCRTGY 468
              +         V +AC+   ++  GR+ + N + +  G   + E+   L+ +  + G 
Sbjct: 431 TARVDLDQFVVACVFSACAELTVIEFGRQVHANFIKSSAGSLLSAEN--SLITMYAKCGC 488

Query: 469 LEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNL-----IKVAPDTIGCYV 523
           LE+A    +SM  R N + W +++ G   +G  + G+    ++     IK A D   C +
Sbjct: 489 LEDAIRVFDSMETR-NVISWTAIIVGYAQNGLVETGQSYFESMEKVYGIKPASDHYACMI 547

Query: 524 VLSNIYAAAGQWDKVSEVREMMKKRGFRKD 553
            L       G+  K++E   ++ +     D
Sbjct: 548 DL------LGRAGKINEAEHLLNRMDVEPD 571



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 88/276 (31%), Positives = 145/276 (52%), Gaps = 3/276 (1%)

Query: 225 LVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITW 284
           L+   SK G+V+ AR++F +MP R+  +WN MI+ Y   G++  A +LF++  I++ ITW
Sbjct: 43  LLSELSKNGRVDEARKLFDQMPYRDKYTWNIMISAYANLGNLVEARKLFNETPIKNSITW 102

Query: 285 NSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVK 344
           +S+++GY  NG  +E L     M      P+  TL S L A + L++L+ G+ +H Y +K
Sbjct: 103 SSLVSGYCKNGCEVEGLRQFSQMWSDGQKPSQYTLGSVLRACSTLSLLHTGKMIHCYAIK 162

Query: 345 NGFVVDGVLGTLLIQMYSKCGS-IESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALD 403
                +  + T L+ MYSKC   +E+    F    +K    WTAM+ G   +G + +A+ 
Sbjct: 163 IQLEANIFVATGLVDMYSKCKCLLEAEYLFFSLPDRKNYVQWTAMLTGYAQNGESLKAIQ 222

Query: 404 LFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDIL 463
            F +M   GM+    TF  +L AC+       GR+    +I   G  P +     LVD+ 
Sbjct: 223 CFKEMRNQGMESNHFTFPSILTACTSISAYAFGRQVHGCIIWS-GFGPNVYVQSALVDMY 281

Query: 464 CRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
            + G L  A+  +++M +  + V W S++ G   HG
Sbjct: 282 AKCGDLASARMILDTMEI-DDVVCWNSMIVGCVTHG 316



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 101/380 (26%), Positives = 175/380 (46%), Gaps = 44/380 (11%)

Query: 161 SSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLF 220
           + L+S  +K G +D  R++FD M  +D  +WN +I  Y   G +  A KLF+E P ++  
Sbjct: 41  NQLLSELSKNGRVDEARKLFDQMPYRDKYTWNIMISAYANLGNLVEARKLFNETPIKNSI 100

Query: 221 SWTCLVDGFSKCG-KVEIAREIFYRM------PNR-------------NLVSWNAMI--- 257
           +W+ LV G+ K G +VE  R+ F +M      P++             +L+    MI   
Sbjct: 101 TWSSLVSGYCKNGCEVEGLRQ-FSQMWSDGQKPSQYTLGSVLRACSTLSLLHTGKMIHCY 159

Query: 258 --------NGYMKAGDVD--SACELFDDMEI--------RDLITWNSMIAGYELNGRFME 299
                   N ++  G VD  S C+   + E         ++ + W +M+ GY  NG  ++
Sbjct: 160 AIKIQLEANIFVATGLVDMYSKCKCLLEAEYLFFSLPDRKNYVQWTAMLTGYAQNGESLK 219

Query: 300 ALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQ 359
           A++  + M    +  N  T  S L+A   ++    GR +H  I+ +GF  +  + + L+ 
Sbjct: 220 AIQCFKEMRNQGMESNHFTFPSILTACTSISAYAFGRQVHGCIIWSGFGPNVYVQSALVD 279

Query: 360 MYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAIT 419
           MY+KCG + SA  +   +    V  W +MIVG   HG   +AL LF+KM    ++    T
Sbjct: 280 MYAKCGDLASARMILDTMEIDDVVCWNSMIVGCVTHGYMEEALVLFHKMHNRDIRIDDFT 339

Query: 420 FIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM 479
           +  VL + +    +  G    ++ I   G +        LVD+  + G L  A      +
Sbjct: 340 YPSVLKSLASCKNLKIGESVHSLTIKT-GFDACKTVSNALVDMYAKQGNLSCALDVFNKI 398

Query: 480 PMRPNFVIWMSLLSGARNHG 499
            +  + + W SL++G  ++G
Sbjct: 399 -LDKDVISWTSLVTGYVHNG 417


>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
          Length = 874

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 232/659 (35%), Positives = 372/659 (56%), Gaps = 12/659 (1%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           Q++HA SVK        + + L+++Y    +  +  A+S+F+  ++   +V +N L+   
Sbjct: 221 QRVHAQSVKFGCRSSVFVCNSLMNMYAKCGL--VEDAKSVFN-WMETRDMVSWNTLMAGL 277

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
             N+   EAL LF +           T   VIK  A L  +   +Q+H  V K GF    
Sbjct: 278 QLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTG 337

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFD-AMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM-P 215
            V+++L   Y+K GE+     +F      +++VSW  +I G ++ G++ +A+ LF  M  
Sbjct: 338 NVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMRE 397

Query: 216 DRDL---FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACEL 272
           DR +   F+++ ++         +I  ++             A++  Y K G  + A  +
Sbjct: 398 DRVMPNEFTYSAMLKASLSILPPQIHAQVIKTNYQHIPSVGTALLASYSKFGSTEDALSI 457

Query: 273 FDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVA-GLAV 331
           F  +E +D++ W++M++ +   G    A  L   M I  + PN+ T+ S + A A   A 
Sbjct: 458 FKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAG 517

Query: 332 LNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVG 391
           +++GR  H+  +K  +     + + L+ MYS+ G+I+SA  VF   + + +  W +MI G
Sbjct: 518 VDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISG 577

Query: 392 LGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP 451
              HG + +A++ F +M   G++   +TF+ V+  C+H GLV +G++YF+ M+ D+ I P
Sbjct: 578 YAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINP 637

Query: 452 TIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNL 511
           T+EHY C+VD+  R G L+E  S I  MP     ++W +LL   R H N ++G+++A+ L
Sbjct: 638 TMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGACRVHKNVELGKFSADKL 697

Query: 512 IKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVG 571
           + + P     YV+LSNIYAAAG+W +  EVR++M  R  +K+ G S I+ +  +H F+  
Sbjct: 698 LSLEPHDSSTYVLLSNIYAAAGKWKERDEVRKLMDYRKVKKEAGCSWIQIKNKVHSFIAF 757

Query: 572 DKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCI-EDQKEKEAELENHSERLAIAFG 630
           DKSHP +D+I+ KL  +  +LK  G+ P+T+ VL  I EDQ  KEA L  HSERLA+AFG
Sbjct: 758 DKSHPMSDQIYKKLKVIITRLKQDGYSPNTSFVLHDIAEDQ--KEAMLVAHSERLALAFG 815

Query: 631 LINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           LI     +P++IVKNLRVC DCH V K++S I +REII+RD SRFHHF  G+CSC DFW
Sbjct: 816 LIATPPGTPLQIVKNLRVCGDCHMVMKMVSMIEDREIIMRDCSRFHHFNGGACSCGDFW 874



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 119/448 (26%), Positives = 206/448 (45%), Gaps = 16/448 (3%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           AR   D I +  + V  N ++  Y       E L  F       +L D+ TL CV+K   
Sbjct: 51  ARYPLDEIPRRDAAVGANRVLFDYARRGMVPEVLDQFSVARRGGVLVDSATLSCVLKACR 110

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVL-SSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWN 192
            +     G+Q+H L  K G    +    +SLV MY K G +  G  VF+ M  K++V+W 
Sbjct: 111 SVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWT 170

Query: 193 CLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPN- 247
            L+ G          M LF  M    +    F++  ++   +  G +++ + +  +    
Sbjct: 171 SLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKF 230

Query: 248 ---RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELL 304
               ++   N+++N Y K G V+ A  +F+ ME RD+++WN+++AG +LN   +EAL+L 
Sbjct: 231 GCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLF 290

Query: 305 ETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKC 364
                       +T  + +   A L  L   R +HS ++K+GF + G + T L   YSKC
Sbjct: 291 HESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKC 350

Query: 365 GSIESALTVFRAIS-KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGV 423
           G +  AL +F   +  + V  WTA+I G   +G    A+ LF++M    + P   T+  +
Sbjct: 351 GELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAM 410

Query: 424 LNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRP 483
           L A   +  +   + +  ++  +Y   P++     L+    + G  E+A S I  M  + 
Sbjct: 411 LKA---SLSILPPQIHAQVIKTNYQHIPSVG--TALLASYSKFGSTEDALS-IFKMIEQK 464

Query: 484 NFVIWMSLLSGARNHGNKDIGEYAANNL 511
           + V W ++LS     G+ +   Y  N +
Sbjct: 465 DVVAWSAMLSCHAQAGDCEGATYLFNKM 492



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 156/335 (46%), Gaps = 30/335 (8%)

Query: 19  LPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIF 78
           +P+   ++ +  +S      Q+HA  +KTN  +   + + LL+ Y      +   A SIF
Sbjct: 401 MPNEFTYSAMLKASLSILPPQIHAQVIKTNYQHIPSVGTALLASY--SKFGSTEDALSIF 458

Query: 79  DRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGA- 137
            ++++   +V ++ ++ C+        A  LF  +  + + P+ FT+  VI   A   A 
Sbjct: 459 -KMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAG 517

Query: 138 IKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDG 197
           + +G+Q H +  K  +     V S+LVSMY++ G ID  + VF+   D+DLVSWN +I G
Sbjct: 518 VDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISG 577

Query: 198 YVKKGEVEVAMKLFDEMP----DRDLFSWTCLVDGFSKCGKVEIAREIFYRMP-----NR 248
           Y + G    A++ F +M       D  ++  ++ G +  G V   ++ F  M      N 
Sbjct: 578 YAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINP 637

Query: 249 NLVSWNAMINGYMKAGDVDSACELFDDMEI-RDLITWNSMIAGYELN-----GRFMEALE 302
            +  +  M++ Y +AG +D    L  DM      + W +++    ++     G+F  A +
Sbjct: 638 TMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGACRVHKNVELGKF-SADK 696

Query: 303 LLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRW 337
           LL       + P+D++    LS +   A    G+W
Sbjct: 697 LLS------LEPHDSSTYVLLSNIYAAA----GKW 721


>gi|50080253|gb|AAT69588.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|222632650|gb|EEE64782.1| hypothetical protein OsJ_19638 [Oryza sativa Japonica Group]
          Length = 870

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 224/661 (33%), Positives = 358/661 (54%), Gaps = 22/661 (3%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +++HA  ++        + + L+++Y      ++  AR +FD  +     + +N +I  +
Sbjct: 217 REVHAHVLRFGFGDEVDVLNALVTMYAK--CGDIVAARKVFDG-MAVTDCISWNAMIAGH 273

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
             N      L LF  +L+  + P+  T+  V   +  L  +   K++HG   K GF  D 
Sbjct: 274 FENHECEAGLELFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDV 333

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKG------EVEVAMKLF 211
              +SL+ MY   G +    ++F  M+ KD +SW  +I GY K G      EV   M+L 
Sbjct: 334 AFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALMELH 393

Query: 212 DEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSW----NAMINGYMKAGDVD 267
           +  PD    +    +   +  G++++  ++     N+  + +    NA++  Y K+  +D
Sbjct: 394 NVSPDD--VTIASALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHID 451

Query: 268 SACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVA 327
            A E+F  M  +D+++W+SMIAG+  N R  EAL     ML G V PN  T ++ALSA A
Sbjct: 452 KAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYML-GHVKPNSVTFIAALSACA 510

Query: 328 GLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTA 387
               L  G+ +H+Y+++ G   +G +   L+ +Y KCG    A   F   S+K V  W  
Sbjct: 511 ATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNI 570

Query: 388 MIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDY 447
           M+ G   HG+   AL LFN+M  MG  P  +TF+ +L ACS AG+V  G   F+MM   +
Sbjct: 571 MLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACSRAGMVIQGWELFHMMTEKF 630

Query: 448 GIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYA 507
            I P ++HY C+VD+L R G L EA + I  MP++P+  +W +LL+G R H + ++GE A
Sbjct: 631 SIVPNLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAVWGALLNGCRIHRHVELGELA 690

Query: 508 ANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHE 567
           A  ++++ P+ +  +V+L ++Y  AG+W +V+ VR+ M+++G  +D G S +E +GV H 
Sbjct: 691 AKVILELEPNDVAYHVLLCDLYTDAGKWAQVARVRKTMREKGLEQDNGCSWVEVKGVTHA 750

Query: 568 FVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAE-LENHSERLA 626
           F+  D+SHPQ  EI+  L  +  ++KA G  P  +     +ED++  E + L  HSERLA
Sbjct: 751 FLTDDESHPQIKEINVVLHGIYERMKACGFAPVES-----LEDKEVSEDDILCGHSERLA 805

Query: 627 IAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCK 686
           +AFGLIN    + I + KN   C  CH + K +S I  REI VRD  + H FK+G CSC 
Sbjct: 806 VAFGLINTTPGTTISVTKNRYTCQSCHVIFKAISEIVRREITVRDTKQLHCFKDGDCSCG 865

Query: 687 D 687
           D
Sbjct: 866 D 866



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 145/474 (30%), Positives = 245/474 (51%), Gaps = 24/474 (5%)

Query: 90  YNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVF 149
           +N+++  Y       EAL L+  +L   + PD +T PCV++    +   + G+++H  V 
Sbjct: 165 WNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVL 224

Query: 150 KLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMK 209
           + GFG +  VL++LV+MYAK G+I   R+VFD M   D +SWN +I G+ +  E E  ++
Sbjct: 225 RFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIAGHFENHECEAGLE 284

Query: 210 LFDEMPDRD----LFSWTCLVDGFSKCGKVEIAREIFYRMPNR----NLVSWNAMINGYM 261
           LF  M + +    L + T +        +V  A+E+      R    ++   N++I  Y 
Sbjct: 285 LFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYT 344

Query: 262 KAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVS 321
             G +  A ++F  ME +D ++W +MI+GYE NG   +ALE+   M + +V P+D T+ S
Sbjct: 345 SLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALMELHNVSPDDVTIAS 404

Query: 322 ALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKK 381
           AL+A A L  L+ G  +H      GF+   V+   L++MY+K   I+ A+ VF+ +++K 
Sbjct: 405 ALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKD 464

Query: 382 VGHWTAMIVGLGMHGMATQALDLFNKMCRMG-MKPTAITFIGVLNACSHAGLVNDGRRYF 440
           V  W++MI G   +  + +AL  F  M  +G +KP ++TFI  L+AC+  G +  G+   
Sbjct: 465 VVSWSSMIAGFCFNHRSFEALYYFRYM--LGHVKPNSVTFIAALSACAATGALRSGKE-- 520

Query: 441 NMMINDYGIEPTIEHYG----CLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGAR 496
              I+ Y +   I   G     L+D+  + G    A +   S+    + V W  +LSG  
Sbjct: 521 ---IHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQF-SVHSEKDVVSWNIMLSGFV 576

Query: 497 NHGNKDIGEYAANNLIKVA--PDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548
            HG  DI     N ++++   PD +  +V L    + AG   +  E+  MM ++
Sbjct: 577 AHGLGDIALSLFNQMVEMGEHPDEV-TFVALLCACSRAGMVIQGWELFHMMTEK 629



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 88/362 (24%), Positives = 152/362 (41%), Gaps = 22/362 (6%)

Query: 202 GEVEVAMKLFDEMPDRD----------LFSWTCLVD-GFSKCGKVEIAREIFYRMPNRNL 250
           G++  A+ L +  P+            L  W   VD G   C + +         P+  L
Sbjct: 78  GQLAQALWLLESSPEPPDEGAYVALFRLCEWRRAVDAGMRACARADAEH------PSFGL 131

Query: 251 VSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIG 310
              NAM++  ++ G++  A  +F  M  RD+ +WN M+ GY   G   EAL+L   ML  
Sbjct: 132 RLGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWA 191

Query: 311 DVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESA 370
            + P+  T    L    G+     GR +H+++++ GF  +  +   L+ MY+KCG I +A
Sbjct: 192 GMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAA 251

Query: 371 LTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHA 430
             VF  ++      W AMI G   +      L+LF  M    ++P  +T   V  A    
Sbjct: 252 RKVFDGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVASGML 311

Query: 431 GLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMS 490
             V   +      +   G    +     L+ +    G + +A      M  + + + W +
Sbjct: 312 SEVGFAKEMHGFAVKR-GFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETK-DAMSWTA 369

Query: 491 LLSGARNHG--NKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548
           ++SG   +G  +K +  YA   L  V+PD +          A  G+ D   ++ E+ + +
Sbjct: 370 MISGYEKNGFPDKALEVYALMELHNVSPDDV-TIASALAACACLGRLDVGIKLHELAQNK 428

Query: 549 GF 550
           GF
Sbjct: 429 GF 430


>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g46790, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
 gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
 gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 216/588 (36%), Positives = 327/588 (55%), Gaps = 23/588 (3%)

Query: 120 PDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRV 179
           P   T   +I       ++ +  ++H  +   G   D F+ + L+ MY+  G +D  R+V
Sbjct: 75  PSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKV 134

Query: 180 FDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP----DRDLFSWT----------CL 225
           FD    + +  WN L       G  E  + L+ +M     + D F++T          C 
Sbjct: 135 FDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECT 194

Query: 226 VDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWN 285
           V+   K GK EI   +  R  + ++     +++ Y + G VD A  +F  M +R++++W+
Sbjct: 195 VNHLMK-GK-EIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWS 252

Query: 286 SMIAGYELNGRFMEALELLETML--IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIV 343
           +MIA Y  NG+  EAL     M+    D  PN  T+VS L A A LA L +G+ +H YI+
Sbjct: 253 AMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYIL 312

Query: 344 KNGFVVDGVLGTL--LIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQA 401
           + G  +D +L  +  L+ MY +CG +E    VF  +  + V  W ++I   G+HG   +A
Sbjct: 313 RRG--LDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKA 370

Query: 402 LDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVD 461
           + +F +M   G  PT +TF+ VL ACSH GLV +G+R F  M  D+GI+P IEHY C+VD
Sbjct: 371 IQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVD 430

Query: 462 ILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGC 521
           +L R   L+EA   ++ M   P   +W SLL   R HGN ++ E A+  L  + P   G 
Sbjct: 431 LLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGN 490

Query: 522 YVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEI 581
           YV+L++IYA A  WD+V  V+++++ RG +K PG   +E R  ++ FV  D+ +P  ++I
Sbjct: 491 YVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQI 550

Query: 582 HSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIR 641
           H+ L ++   +K  G++P T  VL  +E + EKE  +  HSE+LA+AFGLIN     PIR
Sbjct: 551 HAFLVKLAEDMKEKGYIPQTKGVLYELETE-EKERIVLGHSEKLALAFGLINTSKGEPIR 609

Query: 642 IVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           I KNLR+C DCH  TK +S    +EI+VRD +RFH FKNG CSC D+W
Sbjct: 610 ITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 137/270 (50%), Gaps = 15/270 (5%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +++HA   +     H  I + L+ +Y       + YA  +F  +    ++V ++ +I CY
Sbjct: 202 KEIHAHLTRRGYSSHVYIMTTLVDMYA--RFGCVDYASYVFGGMPVR-NVVSWSAMIACY 258

Query: 98  VFNQRSHEALTLFCDLL--DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF 155
             N ++ EAL  F +++   +   P++ T+  V++  A L A+++GK IHG + + G   
Sbjct: 259 AKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDS 318

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM- 214
              V+S+LV+MY + G++++G+RVFD M D+D+VSWN LI  Y   G  + A+++F+EM 
Sbjct: 319 ILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEML 378

Query: 215 ---PDRDLFSWTCLVDGFSKCGKVEIAREIFYRM-----PNRNLVSWNAMINGYMKAGDV 266
                    ++  ++   S  G VE  + +F  M         +  +  M++   +A  +
Sbjct: 379 ANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRL 438

Query: 267 DSACELFDDMEIRD-LITWNSMIAGYELNG 295
           D A ++  DM        W S++    ++G
Sbjct: 439 DEAAKMVQDMRTEPGPKVWGSLLGSCRIHG 468


>gi|125584568|gb|EAZ25232.1| hypothetical protein OsJ_09035 [Oryza sativa Japonica Group]
          Length = 674

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 222/514 (43%), Positives = 313/514 (60%), Gaps = 30/514 (5%)

Query: 197 GYVKKGEVEVAMKLFDEMPDRDLFSWTCLVD------GFSKCGKVE-----------IAR 239
           GYV+   V  +++LF  M   D  S   +VD       FS   +V            IA+
Sbjct: 170 GYVRNNLVYHSLELFRAMIASDSAS---VVDEAAALVAFSASARVPDRGVTASLHALIAK 226

Query: 240 EIFYRMPNRNLVSWNAMINGYMKAG--DVDSACELFDDMEIRDLITWNSMIAGYELNGRF 297
             F     RN    N M++ Y K G  D++ A ++FD ME RD+++WNSMIA Y  NG  
Sbjct: 227 IGF----ERNAGVVNTMLDSYAKGGSRDLEVARKVFDTME-RDVVSWNSMIALYAQNGMS 281

Query: 298 MEALELLETMLI--GDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGT 355
            EA+ L   ML   G +  N   L + L A A    +  G+ +H+ +V+ G   +  +GT
Sbjct: 282 AEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLEENVYVGT 341

Query: 356 LLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKP 415
            ++ MYSKCG +E A   FR I +K +  W+AMI G GMHG   +AL++F +M R G++P
Sbjct: 342 SIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRP 401

Query: 416 TAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKST 475
             ITFI VL ACSHAGL+++GR ++N M  ++GIE  +EHYGC+VD+L R G L+EA S 
Sbjct: 402 NYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSL 461

Query: 476 IESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQW 535
           I+ M ++P+  IW +LLS  R H N ++ E +   L ++     G YV+LSNIYA A  W
Sbjct: 462 IKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELDASNSGYYVLLSNIYAEARMW 521

Query: 536 DKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAA 595
             V  +R ++K R   K PG SS E +G ++ F VGDKSHPQ  EI+S L ++  +++ A
Sbjct: 522 KDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHIEIYSYLEKLLERMQEA 581

Query: 596 GHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSV 655
           G+VP+T  VL  + D++EKE+ L  HSE+LA+AF L+N   RS I I+KNLRVC+DCH+ 
Sbjct: 582 GYVPNTGSVLHDL-DEEEKESALRIHSEKLAVAFALMNSVPRSVIHIIKNLRVCSDCHTA 640

Query: 656 TKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            K ++ I  REII+RD  RFHHFK+G CSC+D+W
Sbjct: 641 MKFITKITEREIIIRDLQRFHHFKDGLCSCRDYW 674



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 133/266 (50%), Gaps = 14/266 (5%)

Query: 37  TQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKC 96
           T  LHAL  K     ++G+ + +L  Y      +L  AR +FD + +   +V +N +I  
Sbjct: 217 TASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTMER--DVVSWNSMIAL 274

Query: 97  YVFNQRSHEALTLFCDLLD--RFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
           Y  N  S EA+ L+  +L+    +  +   L  V+   A  GAI+ GK+IH  V ++G  
Sbjct: 275 YAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLE 334

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
            + +V +S+V MY+K G +++  R F  + +K+++SW+ +I GY   G  + A+++F EM
Sbjct: 335 ENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEM 394

Query: 215 PDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNR-----NLVSWNAMINGYMKAGD 265
               L     ++  ++   S  G ++  R  +  M         +  +  M++   +AG 
Sbjct: 395 KRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGC 454

Query: 266 VDSACELFDDMEIR-DLITWNSMIAG 290
           +D A  L  +M+++ D   W ++++ 
Sbjct: 455 LDEAYSLIKEMKVKPDAAIWGALLSA 480


>gi|224088870|ref|XP_002308572.1| predicted protein [Populus trichocarpa]
 gi|222854548|gb|EEE92095.1| predicted protein [Populus trichocarpa]
          Length = 433

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 205/434 (47%), Positives = 277/434 (63%), Gaps = 1/434 (0%)

Query: 256 MINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPN 315
           M+ G+ + G V    +LFD+M  RD+I+WN+M+  Y  NG+  EALE  + M    ++P+
Sbjct: 1   MLAGFARDGQVSVVQKLFDEMPERDVISWNTMLMAYVHNGKLGEALECFKRMRESGLVPD 60

Query: 316 DATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFR 375
           +ATLV+ LSA A L +L  G+ +HS I      +   +GT L+ MY+KCG IE +  +F 
Sbjct: 61  EATLVTMLSASAQLCLLEHGQSIHSIIDSLSLPMTISIGTALLDMYAKCGCIEQSRLLFE 120

Query: 376 AISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVND 435
            + ++ V  W  MI GL  HG+   AL LF +    G+ P  +TF+GVLNACS AGLV +
Sbjct: 121 NMPRRDVSTWNVMICGLASHGLGKDALTLFERFLNEGLHPMNVTFVGVLNACSRAGLVKE 180

Query: 436 GRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGA 495
           GR YF MM + YGIEP +EHYGC+VD+L R G + EA   IESM + P+ V+W  +L   
Sbjct: 181 GRHYFQMMTDSYGIEPEMEHYGCMVDLLGRAGLVFEAIKVIESMAISPDPVLWAMVLCAC 240

Query: 496 RNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPG 555
           R HG  ++GE   N LI++ P   G YV L++IYA + +W+ V  VR +M +R   K  G
Sbjct: 241 RIHGLAELGEKIGNRLIELDPTYDGHYVQLASIYANSRKWEDVVRVRRLMAERNTSKVAG 300

Query: 556 SSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKE 615
            S IE RG +H FV G + H Q+ EI   L  +  +L AAG+VP+ + VL  I  ++EKE
Sbjct: 301 WSLIEARGKVHRFVAGHREHEQSLEIQKMLEIIETRLAAAGYVPNVSPVLHDI-GEEEKE 359

Query: 616 AELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRF 675
             ++ HSERLAIAFGL+     S IRIVKNLRVC DCH VTK++S ++ REIIVRD SRF
Sbjct: 360 NAIKVHSERLAIAFGLLVTGPGSCIRIVKNLRVCWDCHEVTKMISRVFEREIIVRDGSRF 419

Query: 676 HHFKNGSCSCKDFW 689
           HHFK G CSC D+W
Sbjct: 420 HHFKEGKCSCLDYW 433



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/309 (25%), Positives = 126/309 (40%), Gaps = 76/309 (24%)

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS- 252
           ++ G+ + G+V V  KLFDEMP+RD+ SW  ++  +   GK+  A E F RM    LV  
Sbjct: 1   MLAGFARDGQVSVVQKLFDEMPERDVISWNTMLMAYVHNGKLGEALECFKRMRESGLVPD 60

Query: 253 --------------------------------------WNAMINGYMKAGDVDSACELFD 274
                                                   A+++ Y K G ++ +  LF+
Sbjct: 61  EATLVTMLSASAQLCLLEHGQSIHSIIDSLSLPMTISIGTALLDMYAKCGCIEQSRLLFE 120

Query: 275 DMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNK 334
           +M  RD+ TWN MI G   +G   +AL L E  L   + P + T V  L+A +   ++ +
Sbjct: 121 NMPRRDVSTWNVMICGLASHGLGKDALTLFERFLNEGLHPMNVTFVGVLNACSRAGLVKE 180

Query: 335 GRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGM 394
           GR  H +                 QM +    IE  +            H+  M+  LG 
Sbjct: 181 GR--HYF-----------------QMMTDSYGIEPEME-----------HYGCMVDLLGR 210

Query: 395 HGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIE 454
            G+  +A+ +      M + P  + +  VL AC   GL   G +  N +I    ++PT +
Sbjct: 211 AGLVFEAIKVIES---MAISPDPVLWAMVLCACRIHGLAELGEKIGNRLIE---LDPTYD 264

Query: 455 -HYGCLVDI 462
            HY  L  I
Sbjct: 265 GHYVQLASI 273



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 115/231 (49%), Gaps = 11/231 (4%)

Query: 75  RSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAAR 134
           + +FD + +   ++ +N ++  YV N +  EAL  F  + +  L+PD  TL  ++  +A+
Sbjct: 15  QKLFDEMPER-DVISWNTMLMAYVHNGKLGEALECFKRMRESGLVPDEATLVTMLSASAQ 73

Query: 135 LGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCL 194
           L  ++ G+ IH ++  L       + ++L+ MYAK G I+  R +F+ M  +D+ +WN +
Sbjct: 74  LCLLEHGQSIHSIIDSLSLPMTISIGTALLDMYAKCGCIEQSRLLFENMPRRDVSTWNVM 133

Query: 195 IDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNR-- 248
           I G    G  + A+ LF+   +  L     ++  +++  S+ G V+  R  F  M +   
Sbjct: 134 ICGLASHGLGKDALTLFERFLNEGLHPMNVTFVGVLNACSRAGLVKEGRHYFQMMTDSYG 193

Query: 249 ---NLVSWNAMINGYMKAGDVDSACELFDDMEIR-DLITWNSMIAGYELNG 295
               +  +  M++   +AG V  A ++ + M I  D + W  ++    ++G
Sbjct: 194 IEPEMEHYGCMVDLLGRAGLVFEAIKVIESMAISPDPVLWAMVLCACRIHG 244


>gi|225444329|ref|XP_002264248.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 767

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 248/707 (35%), Positives = 390/707 (55%), Gaps = 64/707 (9%)

Query: 37  TQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHP-SLVLYNLLIK 95
           T Q+HA   +  L      ++ L+  Y      + +YA  +FD + +    +V +  LI 
Sbjct: 71  TLQVHAYLTRLGLAADRFSAAALVDAY--GKCGHAYYAAQVFDEMPEGSVDVVSWTALIS 128

Query: 96  CYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAI-------------KEGK 142
            Y  N    EA   F  +  R++   + +  C +     LGA+             + G 
Sbjct: 129 AYSSNGCVDEAFKAFGRM--RWMRGWDGSECCGVD-VVSLGALVSACAVGCGSNCLRRGS 185

Query: 143 QIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAM--DDKDLVSWNCLIDGYVK 200
            +HGLV K GFG    + +S+V MY+   ++    RVF+ +  + +D+VSWN LI G+  
Sbjct: 186 AVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFTL 245

Query: 201 KGEVEVAMKLFDEM---------PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR--- 248
            GE E A++ F++M         P+R   +   L+   ++ G VE +  +   + +R   
Sbjct: 246 NGEAERALRTFEDMVSEGTSAVEPNR--VTVIALLKSCAELGCVETSSWVHEYISSRHSS 303

Query: 249 -----NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALEL 303
                ++V   A+++ + + G++  A E+FD +E ++++ W++MIAGYE      EAL L
Sbjct: 304 LLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRL 363

Query: 304 LETMLIG------DVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLL 357
              ML+       +V PN  TLVS ++A + L        +H Y V  G   D  + + L
Sbjct: 364 FRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSASMIHKYAVATGLDQDARIASAL 423

Query: 358 IQMYSKCGSIESALTVFRAI--SKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKP 415
           I M +KCG IE    VF  +  S + V  W++MI   G+HG   +AL+LF++M   G +P
Sbjct: 424 IDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEP 483

Query: 416 TAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKST 475
             IT+I VL+ACSHAGLV  G+  FN M  DYG+ PT +HY CLVD+L R G+L+EA + 
Sbjct: 484 NEITYISVLSACSHAGLVEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLDEAHNV 543

Query: 476 IESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQW 535
           I +MP++ +  +W SLL+    HGN  +GE     ++ +  +++G +V+L+N+Y  AG+W
Sbjct: 544 ILNMPIKADLALWGSLLAACHLHGNCKLGEIVEKKILSLDSNSVGHHVLLANMYEDAGRW 603

Query: 536 DKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKL-KA 594
           D V  +R  +++ G RK PG S IE    ++ F+  D+SHP+++ I+ +L  +  ++ KA
Sbjct: 604 DDVVRMRVELRRSGLRKIPGQSFIEIGNEVYSFMAEDRSHPESEMIYKELDGLDERVRKA 663

Query: 595 AGHVPDTTQVLLCIEDQKEKEAEL--ENHSERLAIAFGLI----------NVKSRSPIRI 642
           A +V +T    L +ED       L  + HSERLAIAFGLI          ++++ +PIRI
Sbjct: 664 AKYVTETG---LNVEDGDIAGLILRCKYHSERLAIAFGLIMIDRHSTCSCSLRTATPIRI 720

Query: 643 VKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            KNLRVC DCH+ TKL+S + +RE+IVRD  RFHHF++G CSC D+W
Sbjct: 721 TKNLRVCRDCHAYTKLVSKVIDRELIVRDAHRFHHFRDGFCSCGDYW 767



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 128/443 (28%), Positives = 197/443 (44%), Gaps = 51/443 (11%)

Query: 100 NQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFV 159
            Q    ALT F  +    +  +NFT P ++K  A L  +    Q+H  + +LG   D+F 
Sbjct: 30  TQNPQTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLPTLQVHAYLTRLGLAADRFS 89

Query: 160 LSSLVSMYAKFGEIDLGRRVFDAMDDK--DLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
            ++LV  Y K G      +VFD M +   D+VSW  LI  Y   G V+ A K F  M  R
Sbjct: 90  AAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNGCVDEAFKAFGRM--R 147

Query: 218 DLFSW----TCLVDGFS----------KCGKVEIARE-------IFYRMPNRNLVSWNAM 256
            +  W     C VD  S           CG   + R        + Y       +  N+M
Sbjct: 148 WMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHGLVVKYGFGVSTHLG-NSM 206

Query: 257 INGYMKAGDVDSACELFDDMEI--RDLITWNSMIAGYELNGRFMEALELLETML---IGD 311
           ++ Y    DV  A  +F+ + I  RD+++WNS+I+G+ LNG    AL   E M+      
Sbjct: 207 VHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFTLNGEAERALRTFEDMVSEGTSA 266

Query: 312 VLPNDATLVSALSAVAGLAVLNKGRWMHSYIVK--NGFVV--DGVLGTLLIQMYSKCGSI 367
           V PN  T+++ L + A L  +    W+H YI    +  +V  D V+ T L+ M+++CG++
Sbjct: 267 VEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGNL 326

Query: 368 ESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG------MKPTAITFI 421
             A  +F  +  K V  W+AMI G        +AL LF +M   G      +KP A+T +
Sbjct: 327 ALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLV 386

Query: 422 GVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEH----YGCLVDILCRTGYLEEAKSTIE 477
            V+ ACS  G           MI+ Y +   ++        L+D+  + G +E  +    
Sbjct: 387 SVIAACSRLGASRSAS-----MIHKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFS 441

Query: 478 SMPMRPNFVI-WMSLLSGARNHG 499
            M      V+ W S++     HG
Sbjct: 442 EMDESTRTVVSWSSMIGAEGIHG 464



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 53/132 (40%), Gaps = 3/132 (2%)

Query: 279 RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWM 338
           +D   WNS+IA          AL     M    V  N+ T  + L A A L  L     +
Sbjct: 16  KDTFHWNSLIAKNATQNP-QTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLPTLQV 74

Query: 339 HSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVG--HWTAMIVGLGMHG 396
           H+Y+ + G   D      L+  Y KCG    A  VF  + +  V    WTA+I     +G
Sbjct: 75  HAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNG 134

Query: 397 MATQALDLFNKM 408
              +A   F +M
Sbjct: 135 CVDEAFKAFGRM 146


>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 599

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 220/578 (38%), Positives = 354/578 (61%), Gaps = 19/578 (3%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           ++ +Q+HA S+ ++L Y   I +++++ ++      L YA  +F++  Q P   +YN +I
Sbjct: 20  QQLKQIHAKSIISSLSYTQFIITKIINSFLSHAC--LDYATQVFNQT-QEPDGFIYNAMI 76

Query: 95  KCYVFNQRSHEALTLFCDLLD-RFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGF 153
           + Y  +Q    A++++  +   + +L D +T P V K  A   A+++GK++HG++ ++G+
Sbjct: 77  RAYSSSQTPCVAISIYNKMRACQNILGDKYTYPFVFKACASQFAVEKGKEVHGVIVRIGY 136

Query: 154 GFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDE 213
             D F+ SSL++ Y   GEI   ++VFD  D KD+V WN LI GY ++G V  +  +F E
Sbjct: 137 ELDGFLQSSLLNFYMVCGEIGNAQQVFDEFDAKDVVFWNALITGYARQGMVLDSFGVFKE 196

Query: 214 M-------PDRDLFSWTCLVDGFSKCGKVEIAREIF-YRMPNRNLVSW----NAMINGYM 261
           M       P+    +   L+    +   +++ R I  Y M +  L        A+IN Y+
Sbjct: 197 MVEVKEVRPNEG--TMMGLIVACIESKNLKLGRAIHGYMMKDMVLREGVKLEAALINLYV 254

Query: 262 KAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVS 321
           K G +D A +LFD++  ++ + WNS+I GY   G   E +ELL  M + ++ P+  T+  
Sbjct: 255 KCGYLDGARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSNLKPDRFTVSG 314

Query: 322 ALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKK 381
            LSA A +   N G W+H +  K G + D  +GT LI MY+KCG I +A  VF  ++++ 
Sbjct: 315 VLSACAQMGAFNLGNWVHRFAEKKG-IWDVFIGTALIDMYAKCGFIGAARKVFDQMNERN 373

Query: 382 VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFN 441
           V  W A++ G   HG A  A++LF++M   G +P +ITF+ VL+AC+H+GLV +G++YF+
Sbjct: 374 VATWNAILSGYASHGQAESAIELFSEMRESGARPDSITFLAVLHACAHSGLVENGKQYFD 433

Query: 442 MMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNK 501
           +M+  Y I P +EHYGC+VD+L R G L+EA+  I+ M + PN V+W +LLS    HGN 
Sbjct: 434 LMLQYYKIPPRVEHYGCMVDLLGRAGLLQEARELIKMMVVEPNVVVWGALLSACSIHGNI 493

Query: 502 DIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEH 561
           +IGE+AA+++IK+     G YV+L+N+YA+A ++++V  VREMM ++G  K  G S IE 
Sbjct: 494 EIGEWAAHHMIKLNAMDGGSYVILANLYASAQRFNRVKAVREMMVEKGICKSHGCSMIEI 553

Query: 562 RGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVP 599
             V+HEFVV DK HP+++EI+S L E+  KLK AG+VP
Sbjct: 554 GDVVHEFVVADKMHPRSEEIYSVLDELSKKLKMAGYVP 591



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/379 (24%), Positives = 183/379 (48%), Gaps = 20/379 (5%)

Query: 138 IKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDG 197
           I++ KQIH         + +F+++ +++ +     +D   +VF+   + D   +N +I  
Sbjct: 19  IQQLKQIHAKSIISSLSYTQFIITKIINSFLSHACLDYATQVFNQTQEPDGFIYNAMIRA 78

Query: 198 YVKKGEVEVAMKLFDEMPD-----RDLFSWTCLVDGFSKCGKVEIARE-------IFYRM 245
           Y       VA+ ++++M        D +++  +    +    VE  +E       I Y +
Sbjct: 79  YSSSQTPCVAISIYNKMRACQNILGDKYTYPFVFKACASQFAVEKGKEVHGVIVRIGYEL 138

Query: 246 PNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLE 305
                   ++++N YM  G++ +A ++FD+ + +D++ WN++I GY   G  +++  + +
Sbjct: 139 DG---FLQSSLLNFYMVCGEIGNAQQVFDEFDAKDVVFWNALITGYARQGMVLDSFGVFK 195

Query: 306 TML-IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV-LGTLLIQMYSK 363
            M+ + +V PN+ T++  + A      L  GR +H Y++K+  + +GV L   LI +Y K
Sbjct: 196 EMVEVKEVRPNEGTMMGLIVACIESKNLKLGRAIHGYMMKDMVLREGVKLEAALINLYVK 255

Query: 364 CGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGV 423
           CG ++ A  +F  I +K    W ++I G    G   + ++L  +M    +KP   T  GV
Sbjct: 256 CGYLDGARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSNLKPDRFTVSGV 315

Query: 424 LNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRP 483
           L+AC+  G  N G  + +      GI         L+D+  + G++  A+   + M  R 
Sbjct: 316 LSACAQMGAFNLG-NWVHRFAEKKGIWDVFIGTA-LIDMYAKCGFIGAARKVFDQMNER- 372

Query: 484 NFVIWMSLLSGARNHGNKD 502
           N   W ++LSG  +HG  +
Sbjct: 373 NVATWNAILSGYASHGQAE 391


>gi|413946633|gb|AFW79282.1| hypothetical protein ZEAMMB73_599854 [Zea mays]
          Length = 863

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 226/658 (34%), Positives = 362/658 (55%), Gaps = 15/658 (2%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +++HA  ++        + + L+++Y      ++  AR +FD +      + +N +I  +
Sbjct: 209 REVHAHVLRFGFGEEVDVLNALMTMYAK--CGDVMAARKVFDSMTVM-DCISWNAMIAGH 265

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
             N   +  L LF  +L   + P+  T+  V   +  L  +   K++HGL  K GF  D 
Sbjct: 266 FENGECNAGLELFLTMLHDEVQPNLMTITSVTVASGLLSDVTFAKEMHGLAVKRGFAGDV 325

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP-- 215
              +SL+ MYA  G +   R VF  MD +D ++W  +I GY K G  + A++++  M   
Sbjct: 326 AFCNSLIQMYASLGMMRQARTVFSRMDTRDAMTWTAMISGYEKNGFPDKALEVYALMEVN 385

Query: 216 --DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSW----NAMINGYMKAGDVDSA 269
               D  +    +   +  G +++  ++     ++  +S+    NA++  Y K+  +D A
Sbjct: 386 NVSPDDITIASALAACACLGSLDVGVKLHELAESKGFISYIVVTNAILEMYAKSKRIDKA 445

Query: 270 CELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGL 329
            E+F  M  +D+++W+SMIAG+  N R  EAL     ML  DV PN  T ++AL+A A  
Sbjct: 446 IEVFKCMHEKDVVSWSSMIAGFCFNHRNFEALYYFRHML-ADVKPNSVTFIAALAACAAT 504

Query: 330 AVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMI 389
             L  G+ +H+++++ G   +G L   LI +Y KCG    A   F A   K V  W  MI
Sbjct: 505 GALRSGKEIHAHVLRCGIEYEGYLPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSWNIMI 564

Query: 390 VGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGI 449
            G   HG    AL  FN+M ++G  P  +TF+ +L ACS  G+V++G   F+ M   Y I
Sbjct: 565 AGFVAHGHGDTALSFFNQMVKIGECPDEVTFVALLCACSRGGMVSEGWELFHSMTEKYSI 624

Query: 450 EPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAAN 509
            P ++HY C+VD+L R G L EA + I  MP+ P+  +W +LL+G R H + ++GE AA 
Sbjct: 625 VPNLKHYACMVDLLSRAGQLTEAYNFINEMPITPDAAVWGALLNGCRIHRHVELGELAAK 684

Query: 510 NLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFV 569
            ++ + P+  G +V+L ++YA A  WDK++ VR+ M+++G   D G S +E +GV+H F+
Sbjct: 685 YVLALEPNDAGYHVLLCDLYADACLWDKLARVRKTMREKGLDHDSGCSWVEVKGVVHAFL 744

Query: 570 VGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAF 629
             D+SHPQ  EI++ L  +  ++KA+G+ P  +    C ED+  K+     HSERLA+AF
Sbjct: 745 TDDESHPQIREINTVLEGIYERMKASGYAPVESH---CPEDEVLKDDIFCGHSERLAVAF 801

Query: 630 GLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKD 687
           GLIN    + I + KN   C  CH + K++S I  R+IIVRD+ + HHFK+GSCSC D
Sbjct: 802 GLINTTPGTSISVTKNQYTCQSCHRILKMISNIVRRDIIVRDSKQLHHFKDGSCSCGD 859



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 132/445 (29%), Positives = 228/445 (51%), Gaps = 23/445 (5%)

Query: 90  YNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVF 149
           +N+++  Y  +    EAL L+  ++   + PD +T PCV++    +   + G+++H  V 
Sbjct: 157 WNVMVGGYGKSGLLDEALDLYHRMMWAGVRPDVYTFPCVLRSCGGVPDWRMGREVHAHVL 216

Query: 150 KLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMK 209
           + GFG +  VL++L++MYAK G++   R+VFD+M   D +SWN +I G+ + GE    ++
Sbjct: 217 RFGFGEEVDVLNALMTMYAKCGDVMAARKVFDSMTVMDCISWNAMIAGHFENGECNAGLE 276

Query: 210 LF-----DEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS----WNAMINGY 260
           LF     DE+   +L + T +         V  A+E+      R         N++I  Y
Sbjct: 277 LFLTMLHDEV-QPNLMTITSVTVASGLLSDVTFAKEMHGLAVKRGFAGDVAFCNSLIQMY 335

Query: 261 MKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLV 320
              G +  A  +F  M+ RD +TW +MI+GYE NG   +ALE+   M + +V P+D T+ 
Sbjct: 336 ASLGMMRQARTVFSRMDTRDAMTWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDITIA 395

Query: 321 SALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKK 380
           SAL+A A L  L+ G  +H      GF+   V+   +++MY+K   I+ A+ VF+ + +K
Sbjct: 396 SALAACACLGSLDVGVKLHELAESKGFISYIVVTNAILEMYAKSKRIDKAIEVFKCMHEK 455

Query: 381 KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYF 440
            V  W++MI G   +    +AL  F  M    +KP ++TFI  L AC+  G +  G+   
Sbjct: 456 DVVSWSSMIAGFCFNHRNFEALYYFRHML-ADVKPNSVTFIAALAACAATGALRSGKE-- 512

Query: 441 NMMINDYGIEPTIEHYG----CLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGAR 496
              I+ + +   IE+ G     L+D+  + G    A +   +   + + V W  +++G  
Sbjct: 513 ---IHAHVLRCGIEYEGYLPNALIDLYVKCGQTGYAWAQFCAHGAK-DVVSWNIMIAGFV 568

Query: 497 NHGNKDIGEYAANNLIKVA--PDTI 519
            HG+ D      N ++K+   PD +
Sbjct: 569 AHGHGDTALSFFNQMVKIGECPDEV 593



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 111/371 (29%), Positives = 185/371 (49%), Gaps = 17/371 (4%)

Query: 161 SSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM----PD 216
           ++++SM  +FGE     RVF  M ++D+ SWN ++ GY K G ++ A+ L+  M      
Sbjct: 127 NAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKSGLLDEALDLYHRMMWAGVR 186

Query: 217 RDLFSWTCLVDGFSKCGKV---EIAREIFYRMP----NRNLVSWNAMINGYMKAGDVDSA 269
            D++++ C++     CG V    + RE+   +        +   NA++  Y K GDV +A
Sbjct: 187 PDVYTFPCVL---RSCGGVPDWRMGREVHAHVLRFGFGEEVDVLNALMTMYAKCGDVMAA 243

Query: 270 CELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGL 329
            ++FD M + D I+WN+MIAG+  NG     LEL  TML  +V PN  T+ S   A   L
Sbjct: 244 RKVFDSMTVMDCISWNAMIAGHFENGECNAGLELFLTMLHDEVQPNLMTITSVTVASGLL 303

Query: 330 AVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMI 389
           + +   + MH   VK GF  D      LIQMY+  G +  A TVF  +  +    WTAMI
Sbjct: 304 SDVTFAKEMHGLAVKRGFAGDVAFCNSLIQMYASLGMMRQARTVFSRMDTRDAMTWTAMI 363

Query: 390 VGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGI 449
            G   +G   +AL+++  M    + P  IT    L AC+  G ++ G +  + +    G 
Sbjct: 364 SGYEKNGFPDKALEVYALMEVNNVSPDDITIASALAACACLGSLDVGVK-LHELAESKGF 422

Query: 450 EPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG-ARNHGNKDIGEYAA 508
              I     ++++  ++  +++A    + M  + + V W S+++G   NH N +   Y  
Sbjct: 423 ISYIVVTNAILEMYAKSKRIDKAIEVFKCMHEK-DVVSWSSMIAGFCFNHRNFEALYYFR 481

Query: 509 NNLIKVAPDTI 519
           + L  V P+++
Sbjct: 482 HMLADVKPNSV 492



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 142/301 (47%), Gaps = 9/301 (2%)

Query: 254 NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL 313
           NAM++  ++ G+   A  +F  M  RD+ +WN M+ GY  +G   EAL+L   M+   V 
Sbjct: 127 NAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKSGLLDEALDLYHRMMWAGVR 186

Query: 314 PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTV 373
           P+  T    L +  G+     GR +H+++++ GF  +  +   L+ MY+KCG + +A  V
Sbjct: 187 PDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFGEEVDVLNALMTMYAKCGDVMAARKV 246

Query: 374 FRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLV 433
           F +++      W AMI G   +G     L+LF  M    ++P  +T   V  A   +GL+
Sbjct: 247 FDSMTVMDCISWNAMIAGHFENGECNAGLELFLTMLHDEVQPNLMTITSVTVA---SGLL 303

Query: 434 NDGR--RYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSL 491
           +D    +  + +    G    +     L+ +    G + +A++    M  R + + W ++
Sbjct: 304 SDVTFAKEMHGLAVKRGFAGDVAFCNSLIQMYASLGMMRQARTVFSRMDTR-DAMTWTAM 362

Query: 492 LSGARNHG--NKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRG 549
           +SG   +G  +K +  YA   +  V+PD I          A  G  D   ++ E+ + +G
Sbjct: 363 ISGYEKNGFPDKALEVYALMEVNNVSPDDI-TIASALAACACLGSLDVGVKLHELAESKG 421

Query: 550 F 550
           F
Sbjct: 422 F 422



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 99/208 (47%), Gaps = 15/208 (7%)

Query: 353 LGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG 412
           LG  ++ M  + G    A  VF  + ++ V  W  M+ G G  G+  +ALDL+++M   G
Sbjct: 125 LGNAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKSGLLDEALDLYHRMMWAG 184

Query: 413 MKPTAITFIGVLNACSHAGLVNDGR--RYFNMMINDYGIEPTIEHYGCLVDILCRTGYLE 470
           ++P   TF  VL +C   G V D R  R  +  +  +G    ++    L+ +  + G + 
Sbjct: 185 VRPDVYTFPCVLRSC---GGVPDWRMGREVHAHVLRFGFGEEVDVLNALMTMYAKCGDVM 241

Query: 471 EAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLI--KVAPDTIGCYVVLSNI 528
            A+   +SM +  + + W ++++G   +G  + G      ++  +V P+ +     ++++
Sbjct: 242 AARKVFDSMTVM-DCISWNAMIAGHFENGECNAGLELFLTMLHDEVQPNLM----TITSV 296

Query: 529 YAAAGQWDKVSEVREM---MKKRGFRKD 553
             A+G    V+  +EM     KRGF  D
Sbjct: 297 TVASGLLSDVTFAKEMHGLAVKRGFAGD 324


>gi|302814190|ref|XP_002988779.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
 gi|300143350|gb|EFJ10041.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
          Length = 796

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 227/644 (35%), Positives = 353/644 (54%), Gaps = 15/644 (2%)

Query: 55  ISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL 114
           + + LL++Y      +L  A+ +F+R+    S+  +N +I  Y  +    EA+ L+ D+ 
Sbjct: 159 LENSLLTMYA--KCGSLEDAKRLFERMSGRRSVSSWNAMIAAYAQSGHFEEAIRLYEDM- 215

Query: 115 DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEID 174
              + P   T   V+   + LG + +G++IH L+   G   D  + ++L++MYA+   +D
Sbjct: 216 --DVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLD 273

Query: 175 LGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP----DRDLFSWTCLVDGFS 230
              ++F  +  +D+VSW+ +I  + +    + A++ + +M       + +++  ++   +
Sbjct: 274 DAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACA 333

Query: 231 KCGKVEIAREIFYRMPNR----NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNS 286
             G +   R +  ++        LV+  A+++ Y   G +D A  LFD +E RD   W  
Sbjct: 334 SVGDLRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTV 393

Query: 287 MIAGYELNGRFMEALELLETMLIGDVLPNDATLVS-ALSAVAGLAVLNKGRWMHSYIVKN 345
           +I GY   G     LEL   M     +P    + S  +SA A L      R  HS I  +
Sbjct: 394 LIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEAD 453

Query: 346 GFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLF 405
           G + D VL T L+ MYS+ G++ESA  VF  +S +    WT +I G   HG    AL L+
Sbjct: 454 GMISDFVLATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLY 513

Query: 406 NKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCR 465
            +M   G +P+ +TF+ VL ACSHAGL   G++ F  + +DY + P I HY C++D+L R
Sbjct: 514 KEMELEGAEPSELTFMVVLYACSHAGLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSR 573

Query: 466 TGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVL 525
            G L +A+  I +MP+ PN V W SLL  +R H +     +AA  + K+ P     YV+L
Sbjct: 574 AGRLSDAEELINAMPVEPNDVTWSSLLGASRIHKDVKRATHAAGQITKLDPVDPASYVLL 633

Query: 526 SNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKL 585
           SN++A  G    ++ VR  M  RG +K  GSS IE    +HEF VGD SHP+  EI ++L
Sbjct: 634 SNVHAVTGNLAGMASVRNTMVARGVKKRRGSSWIEVADQIHEFNVGDNSHPRFQEIFAEL 693

Query: 586 SEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKN 645
             +  K+K AG+VP++ +VL  +  +KEKE  L  HSE+LAIAFGLI     + +RI   
Sbjct: 694 QRLSPKIKEAGYVPESEEVLHDV-GEKEKELLLRLHSEKLAIAFGLIATAPGTTLRIFNT 752

Query: 646 LRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           LR+C+DCHS  K +S I  REIIVRD+SRFH F++G CSC D+W
Sbjct: 753 LRICHDCHSAVKFISAIARREIIVRDSSRFHKFRDGQCSCGDYW 796



 Score =  188 bits (478), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 137/468 (29%), Positives = 227/468 (48%), Gaps = 28/468 (5%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRF-LLPDNFTLPCVIKGA 132
           AR  FD I +      +  ++  Y  N     AL    DL  R  L P+      V+   
Sbjct: 77  ARVAFDAIARKNDYS-WGSMLTAYAQNGHYRAAL----DLYKRMDLQPNPVVYTTVLGAC 131

Query: 133 ARLGAIKEGKQIHGLVFKL-GFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLV-S 190
           A + A++EGK IH  +    G   D  + +SL++MYAK G ++  +R+F+ M  +  V S
Sbjct: 132 ASIEALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRRSVSS 191

Query: 191 WNCLIDGYVKKGEVEVAMKLFDEMP-DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR- 248
           WN +I  Y + G  E A++L+++M  +  + ++T ++   S  G ++  R+I   + +R 
Sbjct: 192 WNAMIAAYAQSGHFEEAIRLYEDMDVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRG 251

Query: 249 ---NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLE 305
              +L   NA++  Y +   +D A ++F  +  RD+++W++MIA +     F EA+E   
Sbjct: 252 TELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYS 311

Query: 306 TMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCG 365
            M +  V PN  T  S L A A +  L  GR +H  I+ NG+ +  V GT L+ +Y+  G
Sbjct: 312 KMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKITLVNGTALVDLYTSYG 371

Query: 366 SIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKP-TAITFIGVL 424
           S++ A ++F  I  +  G WT +I G    G  T  L+L+ +M      P T I +  V+
Sbjct: 372 SLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVI 431

Query: 425 NACSHAGLVNDGRRYF-----NMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM 479
           +AC+  G   D R+       + MI+D+ +  +      LV++  R G LE A+   + M
Sbjct: 432 SACASLGAFADARQAHSDIEADGMISDFVLATS------LVNMYSRWGNLESARQVFDKM 485

Query: 480 PMRPNFVIWMSLLSGARNHGNKD--IGEYAANNLIKVAPDTIGCYVVL 525
             R     W +L++G   HG     +G Y    L    P  +   VVL
Sbjct: 486 SSRDTLA-WTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVVL 532



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 114/437 (26%), Positives = 207/437 (47%), Gaps = 25/437 (5%)

Query: 142 KQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKK 201
           +QIH  +       + F+ + +V  Y K G +   R  FDA+  K+  SW  ++  Y + 
Sbjct: 44  RQIHDRISGAASA-NVFLGNEIVRAYGKCGSVASARVAFDAIARKNDYSWGSMLTAYAQN 102

Query: 202 GEVEVAMKLFDEMP-DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR-----NLVSWNA 255
           G    A+ L+  M    +   +T ++   +    +E  + I  R+        +++  N+
Sbjct: 103 GHYRAALDLYKRMDLQPNPVVYTTVLGACASIEALEEGKAIHSRISGTKGLKLDVILENS 162

Query: 256 MINGYMKAGDVDSACELFDDME-IRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLP 314
           ++  Y K G ++ A  LF+ M   R + +WN+MIA Y  +G F EA+ L E M   DV P
Sbjct: 163 LLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIAAYAQSGHFEEAIRLYEDM---DVEP 219

Query: 315 NDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVF 374
           +  T  S LSA + L +L++GR +H+ I   G  +D  L   L+ MY++C  ++ A  +F
Sbjct: 220 SVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIF 279

Query: 375 RAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVN 434
           + + ++ V  W+AMI       +  +A++ ++KM   G++P   TF  VL AC+  G + 
Sbjct: 280 QRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLR 339

Query: 435 DGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG 494
            GR   + ++ + G + T+ +   LVD+    G L+EA+S  + +  R    +W  L+ G
Sbjct: 340 AGRAVHDQILGN-GYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEG-LWTVLIGG 397

Query: 495 ARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDP 554
               G++  G       +K         ++ S + +A       ++ R+           
Sbjct: 398 YSKQGHR-TGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQ----------- 445

Query: 555 GSSSIEHRGVLHEFVVG 571
             S IE  G++ +FV+ 
Sbjct: 446 AHSDIEADGMISDFVLA 462



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 83/273 (30%), Positives = 140/273 (51%), Gaps = 13/273 (4%)

Query: 227 DGFSKCGKVEIAREIFYRM---PNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLIT 283
           D   +C  +E  R+I  R+    + N+   N ++  Y K G V SA   FD +  ++  +
Sbjct: 32  DALRQCQDLESVRQIHDRISGAASANVFLGNEIVRAYGKCGSVASARVAFDAIARKNDYS 91

Query: 284 WNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIV 343
           W SM+  Y  NG +  AL+L + M   D+ PN     + L A A +  L +G+ +HS I 
Sbjct: 92  WGSMLTAYAQNGHYRAALDLYKRM---DLQPNPVVYTTVLGACASIEALEEGKAIHSRIS 148

Query: 344 -KNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS-KKKVGHWTAMIVGLGMHGMATQA 401
              G  +D +L   L+ MY+KCGS+E A  +F  +S ++ V  W AMI      G   +A
Sbjct: 149 GTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIAAYAQSGHFEEA 208

Query: 402 LDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVD 461
           + L+     M ++P+  TF  VL+ACS+ GL++ GR+  + +I+  G E  +     L+ 
Sbjct: 209 IRLYED---MDVEPSVRTFTSVLSACSNLGLLDQGRK-IHALISSRGTELDLSLQNALLT 264

Query: 462 ILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG 494
           +  R   L++A    + +P R + V W ++++ 
Sbjct: 265 MYARCKCLDDAAKIFQRLPRR-DVVSWSAMIAA 296


>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 197/441 (44%), Positives = 280/441 (63%), Gaps = 1/441 (0%)

Query: 249 NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETML 308
           N+    A++N Y     V  A ++FD++  R++++WN++I GY  N  F + +++   M 
Sbjct: 176 NVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHNRMFRKVIDVFREMQ 235

Query: 309 IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIE 368
           I    P + T+V  L A A L  LN+GRW+  YI  N   ++  +GT LI MY+KCG ++
Sbjct: 236 IAGAKPVEVTMVGVLLACAHLGALNQGRWIDDYIDHNRLRLNVFVGTALIDMYAKCGVVD 295

Query: 369 SALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACS 428
            A  +F+A+  K V  W  +I G  M+G    AL  F++M     KP  +TF+GVL AC 
Sbjct: 296 EAEKIFKAMRVKNVYTWNVLISGYAMNGRGESALQAFSRMIMEKFKPDEVTFLGVLCACC 355

Query: 429 HAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIW 488
           H GLVN+GR YF  M  ++G+ P IEHYGC+VD+L R G+L+EA+  I++M M+P+ +IW
Sbjct: 356 HQGLVNEGRTYFTSMKEEFGLRPRIEHYGCMVDLLGRAGFLDEAQQLIQAMSMQPDPIIW 415

Query: 489 MSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548
             LL   R HGN  +GE+A   L+++ P+    YV+L+N+YA   +WDKV EVREMM  R
Sbjct: 416 RELLGACRIHGNIQLGEFAIKKLLELEPNNGENYVLLANLYARDQRWDKVGEVREMMDCR 475

Query: 549 GFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCI 608
             RK PG SSIE   V++EFVV +   P  +E++  L++M  KLK AG+V DT      I
Sbjct: 476 RVRKVPGCSSIEIDNVVYEFVVSNYIKPGFEEVYKLLADMNKKLKLAGYVADTGMASYDI 535

Query: 609 EDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREII 668
           E++ EKE  L  HSE+LA+AFGL+   S   +RIVKNLR+C DCH   K++S +Y R+I 
Sbjct: 536 EEE-EKEHSLMYHSEKLALAFGLLKSPSGLTLRIVKNLRICQDCHGFFKIVSKVYRRDIS 594

Query: 669 VRDNSRFHHFKNGSCSCKDFW 689
           VRD +RFHHF  G+CSCKD+W
Sbjct: 595 VRDRNRFHHFVGGACSCKDYW 615



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 102/434 (23%), Positives = 173/434 (39%), Gaps = 107/434 (24%)

Query: 89  LYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLV 148
           L N +I+CY  + +   ++ ++  +    + PD+ T P V+K  A+L   + GK IH  +
Sbjct: 109 LCNSMIRCYTDSNKHLHSVFIYTQMWKNGIFPDSSTFPTVLKSVAQLCRQELGKAIHCCI 168

Query: 149 FKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGY---------- 198
            ++GF  + +V ++LV+MY     +   R+VFD + D+++VSWN LI GY          
Sbjct: 169 IQMGFESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHNRMFRKVI 228

Query: 199 --------VKKGEVEVAM----------------KLFDEMPDR-----DLFSWTCLVDGF 229
                        VEV M                +  D+  D      ++F  T L+D +
Sbjct: 229 DVFREMQIAGAKPVEVTMVGVLLACAHLGALNQGRWIDDYIDHNRLRLNVFVGTALIDMY 288

Query: 230 SKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIA 289
           +KCG V+ A +IF  M  +N+ +WN +I+GY                             
Sbjct: 289 AKCGVVDEAEKIFKAMRVKNVYTWNVLISGY----------------------------- 319

Query: 290 GYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVV 349
              +NGR   AL+    M++    P++ T +  L A     ++N+GR             
Sbjct: 320 --AMNGRGESALQAFSRMIMEKFKPDEVTFLGVLCACCHQGLVNEGR------------- 364

Query: 350 DGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMC 409
                T    M  + G             + ++ H+  M+  LG  G   +A  L     
Sbjct: 365 -----TYFTSMKEEFG------------LRPRIEHYGCMVDLLGRAGFLDEAQQLIQA-- 405

Query: 410 RMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTI-EHYGCLVDILCRTGY 468
            M M+P  I +  +L AC   G +  G      ++    +EP   E+Y  L ++  R   
Sbjct: 406 -MSMQPDPIIWRELLGACRIHGNIQLGEFAIKKLLE---LEPNNGENYVLLANLYARDQR 461

Query: 469 LEEAKSTIESMPMR 482
            ++     E M  R
Sbjct: 462 WDKVGEVREMMDCR 475



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 119/237 (50%), Gaps = 4/237 (1%)

Query: 285 NSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVK 344
           NSMI  Y  + + + ++ +   M    + P+ +T  + L +VA L     G+ +H  I++
Sbjct: 111 NSMIRCYTDSNKHLHSVFIYTQMWKNGIFPDSSTFPTVLKSVAQLCRQELGKAIHCCIIQ 170

Query: 345 NGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDL 404
            GF  +  + T L+ MY  C S+  A  VF  I  + +  W A+I G   + M  + +D+
Sbjct: 171 MGFESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHNRMFRKVIDV 230

Query: 405 FNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILC 464
           F +M   G KP  +T +GVL AC+H G +N G R+ +  I+   +   +     L+D+  
Sbjct: 231 FREMQIAGAKPVEVTMVGVLLACAHLGALNQG-RWIDDYIDHNRLRLNVFVGTALIDMYA 289

Query: 465 RTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLI--KVAPDTI 519
           + G ++EA+   ++M ++ N   W  L+SG   +G  +    A + +I  K  PD +
Sbjct: 290 KCGVVDEAEKIFKAMRVK-NVYTWNVLISGYAMNGRGESALQAFSRMIMEKFKPDEV 345



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 119/253 (47%), Gaps = 17/253 (6%)

Query: 55  ISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL 114
           +S+ L+++Y     +++  AR +FD I    ++V +N LI  Y  N+   + + +F ++ 
Sbjct: 179 VSTALVNMY--GTCSSVSDARQVFDEIPDR-NIVSWNALITGYNHNRMFRKVIDVFREMQ 235

Query: 115 DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEID 174
                P   T+  V+   A LGA+ +G+ I   +       + FV ++L+ MYAK G +D
Sbjct: 236 IAGAKPVEVTMVGVLLACAHLGALNQGRWIDDYIDHNRLRLNVFVGTALIDMYAKCGVVD 295

Query: 175 LGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDRDLF---SWTCL 225
              ++F AM  K++ +WN LI GY   G  E A++ F  M      PD   F      C 
Sbjct: 296 EAEKIFKAMRVKNVYTWNVLISGYAMNGRGESALQAFSRMIMEKFKPDEVTFLGVLCACC 355

Query: 226 VDGFSKCGKVEIA--REIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIR-DLI 282
             G    G+      +E F   P   +  +  M++   +AG +D A +L   M ++ D I
Sbjct: 356 HQGLVNEGRTYFTSMKEEFGLRP--RIEHYGCMVDLLGRAGFLDEAQQLIQAMSMQPDPI 413

Query: 283 TWNSMIAGYELNG 295
            W  ++    ++G
Sbjct: 414 IWRELLGACRIHG 426


>gi|15242550|ref|NP_196557.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170796|sp|Q9FIB2.1|PP373_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g09950
 gi|9758973|dbj|BAB09416.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332004087|gb|AED91470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 995

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 249/673 (36%), Positives = 382/673 (56%), Gaps = 25/673 (3%)

Query: 35  KETQQLHALSVKTNLI-YHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLL 93
           K+ +++H   + T L+ +  GI + L+++Y      ++  AR +F  +    S V +N +
Sbjct: 330 KKGREVHGHVITTGLVDFMVGIGNGLVNMYA--KCGSIADARRVFYFMTDKDS-VSWNSM 386

Query: 94  IKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGF 153
           I     N    EA+  +  +    +LP +FTL   +   A L   K G+QIHG   KLG 
Sbjct: 387 ITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGI 446

Query: 154 GFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEV--AMKLF 211
             +  V ++L+++YA+ G ++  R++F +M + D VSWN +I G + + E  +  A+  F
Sbjct: 447 DLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSII-GALARSERSLPEAVVCF 505

Query: 212 ------DEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNL----VSWNAMINGYM 261
                  +  +R  FS           G  E+ ++I       N+     + NA+I  Y 
Sbjct: 506 LNAQRAGQKLNRITFSSVLSAVSSLSFG--ELGKQIHGLALKNNIADEATTENALIACYG 563

Query: 262 KAGDVDSACELFDDM-EIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLV 320
           K G++D   ++F  M E RD +TWNSMI+GY  N    +AL+L+  ML      +     
Sbjct: 564 KCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYA 623

Query: 321 SALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKK 380
           + LSA A +A L +G  +H+  V+     D V+G+ L+ MYSKCG ++ AL  F  +  +
Sbjct: 624 TVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVR 683

Query: 381 KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA-ITFIGVLNACSHAGLVNDGRRY 439
               W +MI G   HG   +AL LF  M   G  P   +TF+GVL+ACSHAGL+ +G ++
Sbjct: 684 NSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKH 743

Query: 440 FNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG-ARNH 498
           F  M + YG+ P IEH+ C+ D+L R G L++ +  IE MPM+PN +IW ++L    R +
Sbjct: 744 FESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPMKPNVLIWRTVLGACCRAN 803

Query: 499 GNK-DIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSS 557
           G K ++G+ AA  L ++ P+    YV+L N+YAA G+W+ + + R+ MK    +K+ G S
Sbjct: 804 GRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYS 863

Query: 558 SIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAE 617
            +  +  +H FV GDKSHP  D I+ KL E+  K++ AG+VP T   L  +E Q+ KE  
Sbjct: 864 WVTMKDGVHMFVAGDKSHPDADVIYKKLKELNRKMRDAGYVPQTGFALYDLE-QENKEEI 922

Query: 618 LENHSERLAIAFGLINVKSRS-PIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFH 676
           L  HSE+LA+AF L   +S + PIRI+KNLRVC DCHS  K +S I  R+II+RD++RFH
Sbjct: 923 LSYHSEKLAVAFVLAAQRSSTLPIRIMKNLRVCGDCHSAFKYISKIEGRQIILRDSNRFH 982

Query: 677 HFKNGSCSCKDFW 689
           HF++G+CSC DFW
Sbjct: 983 HFQDGACSCSDFW 995



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 131/474 (27%), Positives = 221/474 (46%), Gaps = 21/474 (4%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +Q+H L  K +    + +S+ L+S+Y    I ++ YA   F  I    S V +N +I  Y
Sbjct: 124 RQIHGLMFKLSYAVDAVVSNVLISMYWKC-IGSVGYALCAFGDIEVKNS-VSWNSIISVY 181

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGA--IKEGKQIHGLVFKLGFGF 155
                   A  +F  +      P  +T   ++  A  L    ++  +QI   + K G   
Sbjct: 182 SQAGDQRSAFRIFSSMQYDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGLLT 241

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLF---D 212
           D FV S LVS +AK G +   R+VF+ M+ ++ V+ N L+ G V++   E A KLF   +
Sbjct: 242 DLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMN 301

Query: 213 EMPDRDLFSWTCLVDGFSKCGKVE-----IAREIFYRMPNRNLVSW-----NAMINGYMK 262
            M D    S+  L+  F +    E       RE+   +    LV +     N ++N Y K
Sbjct: 302 SMIDVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAK 361

Query: 263 AGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSA 322
            G +  A  +F  M  +D ++WNSMI G + NG F+EA+E  ++M   D+LP   TL+S+
Sbjct: 362 CGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISS 421

Query: 323 LSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKV 382
           LS+ A L     G+ +H   +K G  ++  +   L+ +Y++ G +     +F ++ +   
Sbjct: 422 LSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQ 481

Query: 383 GHWTAMIVGLGMHGMA-TQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFN 441
             W ++I  L     +  +A+  F    R G K   ITF  VL+A S       G++   
Sbjct: 482 VSWNSIIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQIHG 541

Query: 442 MMI-NDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG 494
           + + N+   E T E+   L+    + G ++  +     M  R + V W S++SG
Sbjct: 542 LALKNNIADEATTEN--ALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISG 593



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 89/292 (30%), Positives = 133/292 (45%), Gaps = 37/292 (12%)

Query: 254 NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL 313
           N +IN Y++ GD  SA ++FD+M +R+ ++W  +++GY  NG   EAL  L  M+   + 
Sbjct: 40  NNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGEHKEALVFLRDMVKEGIF 99

Query: 314 PNDATLVSALSA---VAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKC-GSIES 369
            N    VS L A   +  + +L  GR +H  + K  + VD V+  +LI MY KC GS+  
Sbjct: 100 SNQYAFVSVLRACQEIGSVGILF-GRQIHGLMFKLSYAVDAVVSNVLISMYWKCIGSVGY 158

Query: 370 ALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIG-VLNACS 428
           AL  F  I  K    W ++I      G    A  +F+ M   G +PT  TF   V  ACS
Sbjct: 159 ALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGSLVTTACS 218

Query: 429 HAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDI---------LCRTGYLEEAKSTIESM 479
              L     R    ++       TI+  G L D+           ++G L  A+     M
Sbjct: 219 ---LTEPDVRLLEQIM------CTIQKSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQM 269

Query: 480 PMRPNFVIWMSLLSGARNHGNKDIGEYAA------NNLIKVAPDTIGCYVVL 525
             R N V    L+ G      +  GE A       N++I V+P++   YV+L
Sbjct: 270 ETR-NAVTLNGLMVGLV---RQKWGEEATKLFMDMNSMIDVSPES---YVIL 314



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 102/444 (22%), Positives = 199/444 (44%), Gaps = 35/444 (7%)

Query: 119 LPDNFTLPCVI-KGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGR 177
           +P +F   CV  +GAAR          H  ++K     D ++ ++L++ Y + G+    R
Sbjct: 5   VPLSFVQSCVGHRGAARF--------FHSRLYKNRLDKDVYLCNNLINAYLETGDSVSAR 56

Query: 178 RVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFS----WTCLVDGFSKCG 233
           +VFD M  ++ VSW C++ GY + GE + A+    +M    +FS    +  ++    + G
Sbjct: 57  KVFDEMPLRNCVSWACIVSGYSRNGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIG 116

Query: 234 KVEI--AREI----FYRMPNRNLVSWNAMINGYMKA-GDVDSACELFDDMEIRDLITWNS 286
            V I   R+I    F      + V  N +I+ Y K  G V  A   F D+E+++ ++WNS
Sbjct: 117 SVGILFGRQIHGLMFKLSYAVDAVVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNS 176

Query: 287 MIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKG--RWMHSYIVK 344
           +I+ Y   G    A  +  +M      P + T  S ++    L   +      +   I K
Sbjct: 177 IISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQK 236

Query: 345 NGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDL 404
           +G + D  +G+ L+  ++K GS+  A  VF  +  +       ++VGL       +A  L
Sbjct: 237 SGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKL 296

Query: 405 FNKMCRMGMKPTAITFIGVLNACSHAGLVND-----GRRYFNMMINDYGIEPTIEHYGCL 459
           F  M  M +  +  +++ +L++     L  +     GR     +I    ++  +     L
Sbjct: 297 FMDMNSM-IDVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGL 355

Query: 460 VDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGN--KDIGEYAANNLIKVAPD 517
           V++  + G + +A+     M  + + V W S+++G   +G   + +  Y +     + P 
Sbjct: 356 VNMYAKCGSIADARRVFYFMTDKDS-VSWNSMITGLDQNGCFIEAVERYKSMRRHDILP- 413

Query: 518 TIGCYVVLSNIYAAAG-QWDKVSE 540
             G + ++S++ + A  +W K+ +
Sbjct: 414 --GSFTLISSLSSCASLKWAKLGQ 435


>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
 gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
          Length = 781

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 238/671 (35%), Positives = 382/671 (56%), Gaps = 24/671 (3%)

Query: 35  KETQQLHALSVKTNL-IYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLL 93
           ++ +Q+H  +++T L      + + L+++Y      ++ +ARS+F  ++   S V +N +
Sbjct: 119 RKGRQVHGYAIRTGLNDAKVAVGNGLINMYA--KCGDIDHARSVFGLMVDKDS-VSWNSM 175

Query: 94  IKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGF 153
           I     N+   +A+  +  +    L+P NF L   +   A LG I  G+Q HG   KLG 
Sbjct: 176 ITGLDQNKCFEDAVKSYNSMRKTGLMPSNFALISALSSCASLGCILLGQQTHGEGIKLGL 235

Query: 154 GFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKG-EVEVAMKLFD 212
             D  V ++L+++YA+   +   ++VF  M ++D VSWN +I      G  V  A+++F 
Sbjct: 236 DMDVSVSNTLLALYAETSRLAECQKVFSWMLERDQVSWNTVIGALADSGASVSEAIEVFL 295

Query: 213 EM------PDRDLFSWTCLVDGFSKCGKVEIAREIF-----YRMPNRNLVSWNAMINGYM 261
           EM      P+R  F    L+   S     +++ +I      Y + + N +  NA++  Y 
Sbjct: 296 EMMRAGWSPNRVTF--INLLATVSSLSTSKLSHQIHALILKYNVKDDNAIE-NALLACYG 352

Query: 262 KAGDVDSACELFDDM-EIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLV 320
           K+G++++  E+F  M E RD ++WNSMI+GY  N    +A++L+  M+      +  T  
Sbjct: 353 KSGEMENCEEIFSRMSERRDEVSWNSMISGYIHNELLCKAMDLVWLMMQRGQRLDCFTFA 412

Query: 321 SALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKK 380
           + LSA A +A L  G  +H+  ++     D V+G+ L+ MYSKCG I+ A   F  +  +
Sbjct: 413 TVLSACATVATLECGMEVHACAIRACLESDVVIGSALVDMYSKCGRIDYASRFFNLMPVR 472

Query: 381 KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYF 440
            +  W +MI G   HG    AL LF +M   G  P  ITF+GVL+ACSH GLV++G  YF
Sbjct: 473 NLYSWNSMISGYARHGHGDNALRLFTRMKLSGQLPDHITFVGVLSACSHIGLVDEGFEYF 532

Query: 441 NMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG-ARNHG 499
             M   YG+ P +EHY C+VD+L R G L++ ++ I  MP++PN +IW ++L    R +G
Sbjct: 533 KSMTEVYGLVPRVEHYSCMVDLLGRAGELDKIENFINKMPIKPNILIWRTVLGACCRGNG 592

Query: 500 NK-DIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSS 558
            K ++G  AA  L  + P     YV+LSN+YA+ G+W+ ++  R  M++   +K+ G S 
Sbjct: 593 RKTELGRRAAEMLFNMDPQNAVNYVLLSNMYASGGKWEDMARTRRAMREAAVKKEAGCSW 652

Query: 559 IEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAEL 618
           +  +  +H FV GD SHP+   I++KL E+  K++ AG+VP     L  +E +  KE  L
Sbjct: 653 VTMKDGVHVFVAGDNSHPEKGLIYAKLKELDKKIRDAGYVPQIKFALYDLEPEN-KEELL 711

Query: 619 ENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHF 678
             HSE+LA+AF ++   S  PIRI+KNLRVC DCHS  K +S + +R I++RD++RFHHF
Sbjct: 712 SYHSEKLAVAF-VLTRNSGLPIRIMKNLRVCGDCHSAFKYISKVVDRSIVLRDSNRFHHF 770

Query: 679 KNGSCSCKDFW 689
           ++G CSC+D+W
Sbjct: 771 EDGKCSCRDYW 781



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/367 (26%), Positives = 173/367 (47%), Gaps = 22/367 (5%)

Query: 144 IHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGE 203
            H  V K GF  D F+ ++L+++Y + G+    R++FD M D++ V+W CLI GY + G 
Sbjct: 22  FHLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGM 81

Query: 204 VEVAMKLFDEM------PDRDLFSWTCLVDGFSKCGKVEIARE---------IFYRMPNR 248
            E A  +  EM      P+R  F           C +  + R          I   + + 
Sbjct: 82  PEDACGVLKEMIFEGFLPNRFAFG-----SAIRACQESMLWRRKGRQVHGYAIRTGLNDA 136

Query: 249 NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETML 308
            +   N +IN Y K GD+D A  +F  M  +D ++WNSMI G + N  F +A++   +M 
Sbjct: 137 KVAVGNGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMR 196

Query: 309 IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIE 368
              ++P++  L+SALS+ A L  +  G+  H   +K G  +D  +   L+ +Y++   + 
Sbjct: 197 KTGLMPSNFALISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLA 256

Query: 369 SALTVFRAISKKKVGHWTAMIVGLGMHGMA-TQALDLFNKMCRMGMKPTAITFIGVLNAC 427
               VF  + ++    W  +I  L   G + ++A+++F +M R G  P  +TFI +L   
Sbjct: 257 ECQKVFSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATV 316

Query: 428 SHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVI 487
           S     +      + +I  Y ++        L+    ++G +E  +     M  R + V 
Sbjct: 317 SSLS-TSKLSHQIHALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVS 375

Query: 488 WMSLLSG 494
           W S++SG
Sbjct: 376 WNSMISG 382


>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
          Length = 624

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 214/587 (36%), Positives = 330/587 (56%), Gaps = 11/587 (1%)

Query: 112 DLLDRF-LLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKF 170
           DLLD   L P        I   A+   +++ ++IH  +    F  D F+ +SL+ MY K 
Sbjct: 40  DLLDAGELAPTPRVYRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKC 99

Query: 171 GEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLV 226
             +   R VFD M  KD+VSW  LI GY +      A+ L   M         F++  L+
Sbjct: 100 RSVLDARNVFDQMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLL 159

Query: 227 DGFSKCGKVEIAREIFYRMP----NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLI 282
                       R+I         + ++   +A+++ Y + G +D A  +FD ++ ++ +
Sbjct: 160 KAAGAYADSGTGRQIHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGV 219

Query: 283 TWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYI 342
           +WN++I+G+   G    AL     ML         T  S  S++A L  L +G+W+H+++
Sbjct: 220 SWNALISGFARKGDGESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHV 279

Query: 343 VKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQAL 402
           +K+   +   +G  L+ MY+K GS+  A  VF  +  K +  W +M+     +G+  +A+
Sbjct: 280 IKSRQKLTAFVGNTLLDMYAKSGSMIDARKVFDRVDNKDLVTWNSMLTAFAQYGLGKEAV 339

Query: 403 DLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDI 462
             F +M + G+    ITF+ +L ACSH GLV +G+RYF MM  +Y +EP I+HY  +V +
Sbjct: 340 SHFEEMRKSGVYLNQITFLCILTACSHGGLVKEGKRYFEMM-KEYDLEPEIDHYVTVVAL 398

Query: 463 LCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCY 522
           L R G L  A   I  MPM P   +W +LL+  R H N  +G++AA+++ ++ PD  G  
Sbjct: 399 LGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFELDPDDSGPP 458

Query: 523 VVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIH 582
           V+L NIYA+ GQWD  + VR MMK  G +K+P  S +E    +H FV  D +HPQ +EI+
Sbjct: 459 VLLYNIYASTGQWDAAARVRMMMKTTGVKKEPACSWVEMENSVHMFVANDDTHPQAEEIY 518

Query: 583 SKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRI 642
               E+  K++  G+VPD   VLL ++DQ EKEA L+ HSE+LA+AF LI + + + IRI
Sbjct: 519 KMWGEISKKIRKEGYVPDMDYVLLHVDDQ-EKEANLQYHSEKLALAFALIEMPAGATIRI 577

Query: 643 VKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           +KN+R+C DCHS  K +S ++ REI+VRD +RFHHF +GSCSC D+W
Sbjct: 578 MKNIRICGDCHSAFKYISKVFGREIVVRDTNRFHHFSSGSCSCGDYW 624



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 100/362 (27%), Positives = 171/362 (47%), Gaps = 43/362 (11%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           AR++FD+ ++   +V +  LI  Y  N    EA+ L   +L     P+ FT   ++K A 
Sbjct: 105 ARNVFDQ-MRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAG 163

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
                  G+QIH L  K G+  D +V S+L+ MYA+ G++D+   VFD +D K+ VSWN 
Sbjct: 164 AYADSGTGRQIHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNA 223

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRM--PN 247
           LI G+ +KG+ E A+  F EM         F+++ +    ++ G +E  + +   +    
Sbjct: 224 LISGFARKGDGESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSR 283

Query: 248 RNLVSW--NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLE 305
           + L ++  N +++ Y K+G +  A ++FD ++ +DL+TWNSM+  +   G   EA+   E
Sbjct: 284 QKLTAFVGNTLLDMYAKSGSMIDARKVFDRVDNKDLVTWNSMLTAFAQYGLGKEAVSHFE 343

Query: 306 TMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCG 365
            M    V  N  T +  L+A +                  G V +G     +++ Y    
Sbjct: 344 EMRKSGVYLNQITFLCILTACS----------------HGGLVKEGKRYFEMMKEYD--- 384

Query: 366 SIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN 425
                        + ++ H+  ++  LG  G+   AL    K   M M+PTA  +  +L 
Sbjct: 385 ------------LEPEIDHYVTVVALLGRAGLLNYALVFIFK---MPMEPTAAVWGALLA 429

Query: 426 AC 427
           AC
Sbjct: 430 AC 431



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 91/202 (45%), Gaps = 2/202 (0%)

Query: 301 LELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQM 360
           L  L+ +  G++ P      S ++A A    L   R +H+++  + F  D  L   LI M
Sbjct: 36  LRDLDLLDAGELAPTPRVYRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHM 95

Query: 361 YSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITF 420
           Y KC S+  A  VF  + +K +  WT++I G   + M  +A+ L   M +   KP   TF
Sbjct: 96  YCKCRSVLDARNVFDQMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTF 155

Query: 421 IGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP 480
             +L A         GR+   + +   G    +     L+D+  R G ++ A +  + + 
Sbjct: 156 ASLLKAAGAYADSGTGRQIHALAVK-CGWHEDVYVGSALLDMYARCGKMDMATAVFDKLD 214

Query: 481 MRPNFVIWMSLLSGARNHGNKD 502
            + N V W +L+SG    G+ +
Sbjct: 215 SK-NGVSWNALISGFARKGDGE 235


>gi|115470597|ref|NP_001058897.1| Os07g0150000 [Oryza sativa Japonica Group]
 gi|34393394|dbj|BAC82905.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610433|dbj|BAF20811.1| Os07g0150000 [Oryza sativa Japonica Group]
          Length = 592

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 202/439 (46%), Positives = 286/439 (65%), Gaps = 4/439 (0%)

Query: 254 NAMINGYMKAGDVDSACELFDDMEIR--DLITWNSMIAGYELNGRFMEALELLETMLIGD 311
           N++++ Y   G  +SA ++FD+M +R  +L++WNSM+  +  NGR  E L +   ML  D
Sbjct: 155 NSLVHLYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVD 214

Query: 312 VLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESAL 371
             P+  T+VS L+A A    L  GR +H Y+ K G V +  +   LI +Y+KCGS+  A 
Sbjct: 215 FAPDGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDAR 274

Query: 372 TVFRAIS-KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHA 430
            +F  +   + V  WT++IVGL  +G   +AL+LF+ M R  + PT IT +GVL ACSH 
Sbjct: 275 RIFEEMGLGRTVVSWTSLIVGLAANGFGKEALELFSLMEREKLVPTEITMVGVLYACSHC 334

Query: 431 GLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMS 490
           GLV+DG RYF+ M  DYGI P IEH GC+VD+L R G +EEA   I +MP+ PN V+W +
Sbjct: 335 GLVDDGFRYFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRT 394

Query: 491 LLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGF 550
           LL     H   ++G+ A   L+++ P   G YV+LSN+YAA G W  V  +R+ M K   
Sbjct: 395 LLGSCAMHKKLELGKVAWERLVELDPGHSGDYVLLSNLYAAVGMWADVHVLRKTMVKDRV 454

Query: 551 RKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIED 610
           RK+PG S +E R  ++EFV+GD+SHP++++I+  L+E+  +L+  G++P T+ VL  IE+
Sbjct: 455 RKNPGHSLVELRNSVYEFVMGDRSHPESEQIYEMLAEIAERLRREGYIPRTSNVLADIEE 514

Query: 611 QKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVR 670
           + EKE  L  HSERLAIAF L+      PIRI+KNLR+C DCH    L+S +Y+REIIVR
Sbjct: 515 E-EKETALNYHSERLAIAFALLKSLPGIPIRIIKNLRMCGDCHVAFNLISKVYDREIIVR 573

Query: 671 DNSRFHHFKNGSCSCKDFW 689
           D SRFHHF+ G+CSCKD+W
Sbjct: 574 DRSRFHHFQGGACSCKDYW 592



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 107/406 (26%), Positives = 181/406 (44%), Gaps = 50/406 (12%)

Query: 37  TQQLHALSVKTNL-IYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLY--NLL 93
            +Q+HA +++  +   H  ++  LL          L YA ++  R+L H  L  +  N +
Sbjct: 31  AKQIHARALRAGVPTSHPLLAKHLLFHLAALRAPPLRYAVAVLSRLLPHGPLDPFPLNTV 90

Query: 94  IKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGF 153
           ++    + R   AL L      R  LPD  T P +I+  ARL A++EG+ +H    K GF
Sbjct: 91  LRIAAGSPRPRVALELH---RRRLALPDTHTYPPLIQACARLLALREGECLHAEAAKNGF 147

Query: 154 GFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD--DKDLVSWNCLIDGYVKKGEVEVAMKLF 211
               FV +SLV +Y   G  +   +VFD M    ++LVSWN +++ +   G     + +F
Sbjct: 148 VTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVF 207

Query: 212 DEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS----WNAMINGYMKA 263
            EM   D     F+   ++   ++ G + + R +   +    LV      NA+I+ Y K 
Sbjct: 208 WEMLGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHVSNALIDLYAKC 267

Query: 264 GDVDSACELFDDMEI-RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSA 322
           G V+ A  +F++M + R +++W S+I G   NG   EALEL   M    ++P + T+V  
Sbjct: 268 GSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGFGKEALELFSLMEREKLVPTEITMVGV 327

Query: 323 LSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKV 382
           L A +           H  +V +GF           +M    G               ++
Sbjct: 328 LYACS-----------HCGLVDDGF-------RYFDRMKEDYG------------ISPRI 357

Query: 383 GHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACS 428
            H   M+  LG  G   +A D    +  M ++P A+ +  +L +C+
Sbjct: 358 EHLGCMVDLLGRAGRVEEAYDY---IITMPLEPNAVVWRTLLGSCA 400



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 151/333 (45%), Gaps = 26/333 (7%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRI-LQHPSLVLYNLL 93
           +E + LHA + K   +    + + L+ LY          A  +FD + ++  +LV +N +
Sbjct: 133 REGECLHAEAAKNGFVTLVFVQNSLVHLYGA--CGLFESAHKVFDEMPVRGRNLVSWNSM 190

Query: 94  IKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGF 153
           +  +  N R +E LT+F ++L     PD FT+  V+   A  GA+  G+++H  V K+G 
Sbjct: 191 LNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVEKVGL 250

Query: 154 GFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD-DKDLVSWNCLIDGYVKKGEVEVAMKLFD 212
             +  V ++L+ +YAK G ++  RR+F+ M   + +VSW  LI G    G  + A++LF 
Sbjct: 251 VENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGFGKEALELFS 310

Query: 213 EMPDRDLFSWTCLVDGF----SKCGKVEIAREIFYRMPNRNLVS-----WNAMINGYMKA 263
            M    L      + G     S CG V+     F RM     +S        M++   +A
Sbjct: 311 LMEREKLVPTEITMVGVLYACSHCGLVDDGFRYFDRMKEDYGISPRIEHLGCMVDLLGRA 370

Query: 264 GDVDSACELFDDMEIR-DLITWNSMIAGYELNGRF---MEALELLETMLIGDVLPNDATL 319
           G V+ A +    M +  + + W +++    ++ +      A E L  +  G     D  L
Sbjct: 371 GRVEEAYDYIITMPLEPNAVVWRTLLGSCAMHKKLELGKVAWERLVELDPGH--SGDYVL 428

Query: 320 VSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV 352
           +S L A  G+       W   ++++   V D V
Sbjct: 429 LSNLYAAVGM-------WADVHVLRKTMVKDRV 454



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 101/230 (43%), Gaps = 8/230 (3%)

Query: 300 ALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQ 359
           ALEL    L    LP+  T    + A A L  L +G  +H+   KNGFV    +   L+ 
Sbjct: 103 ALELHRRRL---ALPDTHTYPPLIQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVH 159

Query: 360 MYSKCGSIESALTVF--RAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA 417
           +Y  CG  ESA  VF    +  + +  W +M+     +G   + L +F +M  +   P  
Sbjct: 160 LYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDG 219

Query: 418 ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIE 477
            T + VL AC+  G +  GRR  ++ +   G+         L+D+  + G + +A+   E
Sbjct: 220 FTIVSVLTACAEFGALALGRR-VHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFE 278

Query: 478 SMPMRPNFVIWMSLLSG--ARNHGNKDIGEYAANNLIKVAPDTIGCYVVL 525
            M +    V W SL+ G  A   G + +  ++     K+ P  I    VL
Sbjct: 279 EMGLGRTVVSWTSLIVGLAANGFGKEALELFSLMEREKLVPTEITMVGVL 328


>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
 gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 225/625 (36%), Positives = 352/625 (56%), Gaps = 38/625 (6%)

Query: 70  NLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVI 129
           N+   R++FD++  H + V YN +I  +  N  S +AL  F  + +      ++T   V+
Sbjct: 104 NVEDLRAVFDQMSVHDA-VSYNTVIAGFSGNGCSSQALEFFVRMQEEGFESTDYTHVSVL 162

Query: 130 KGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLV 189
              ++L  IK GKQIHG +     G   FV                              
Sbjct: 163 HACSQLLDIKRGKQIHGRIVATSLGESVFV------------------------------ 192

Query: 190 SWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRN 249
            WN L + Y K G ++ A  LFD M ++++ SW  ++ G+ + G+ E   ++F  M +  
Sbjct: 193 -WNALTNMYAKCGALDQARWLFDRMVNKNVVSWNSMISGYLQNGQPETCTKLFCEMQSSG 251

Query: 250 L----VSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLE 305
           L    V+ + +++ Y + G +D AC+ F +++ +D + W +M+ G   NG+  +AL L  
Sbjct: 252 LMPDQVTISNILSAYFQCGYIDEACKTFREIKEKDKVCWTTMMVGCAQNGKEEDALLLFR 311

Query: 306 TMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCG 365
            ML+ +V P++ T+ S +S+ A LA L +G+ +H   V  G   D ++ + L+ MYSKCG
Sbjct: 312 EMLLENVRPDNFTISSVVSSCARLASLCQGQAVHGKAVIFGVDHDLLVSSALVDMYSKCG 371

Query: 366 SIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN 425
               A  VF+ +  + V  W +MI+G   +G   +AL L+ +M    +KP  ITF+GVL+
Sbjct: 372 ETADAWIVFKRMLTRNVISWNSMILGYAQNGKDLEALALYEEMLHENLKPDNITFVGVLS 431

Query: 426 ACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNF 485
           AC HAGLV  G+ YF  +   +G+ PT +HY C++++L R GY+++A   I+SM   PN 
Sbjct: 432 ACMHAGLVERGQGYFYSISKIHGMNPTFDHYSCMINLLGRAGYMDKAVDLIKSMTFEPNC 491

Query: 486 VIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMM 545
           +IW +LLS  R + + + GE AA +L ++ P   G Y++LSNIYAA G+W  V+ VR +M
Sbjct: 492 LIWSTLLSVCRINCDVNNGEMAARHLFELDPHNAGPYIMLSNIYAACGRWKDVAAVRSLM 551

Query: 546 KKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVL 605
           K    +K    S IE    +H+FV  D++H +T++I+ +L+ +  KL+ +G  PDT  VL
Sbjct: 552 KNNKIKKFAAYSWIEIDNQVHKFVAEDRTHSETEQIYEELNRLIKKLQESGFTPDTNLVL 611

Query: 606 LCIEDQKEKEAELENHSERLAIAFGLINVK-SRSPIRIVKNLRVCNDCHSVTKLLSGIYN 664
             + ++ EK   +  HSE+LA+AF LI     R+PIRI+KN+RVC DCH   K +S I  
Sbjct: 612 HDVVEE-EKFDSICYHSEKLALAFWLIKKPHGRTPIRIMKNIRVCGDCHVFMKFVSKIIR 670

Query: 665 REIIVRDNSRFHHFKNGSCSCKDFW 689
           R II+RD +RFHHF  G CSCKD W
Sbjct: 671 RPIILRDINRFHHFIEGRCSCKDSW 695



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 111/413 (26%), Positives = 171/413 (41%), Gaps = 80/413 (19%)

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP 215
           D F+ + L+ +YAK G +   R +FD M  +D+ SWN ++  Y K G VE    +FD+M 
Sbjct: 57  DTFLQNRLLHLYAKSGNLSDARDLFDKMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQMS 116

Query: 216 DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS----------------------- 252
             D  S+  ++ GFS  G    A E F RM      S                       
Sbjct: 117 VHDAVSYNTVIAGFSGNGCSSQALEFFVRMQEEGFESTDYTHVSVLHACSQLLDIKRGKQ 176

Query: 253 ----------------WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGR 296
                           WNA+ N Y K G +D A  LFD M  +++++WNSMI+GY  NG+
Sbjct: 177 IHGRIVATSLGESVFVWNALTNMYAKCGALDQARWLFDRMVNKNVVSWNSMISGYLQNGQ 236

Query: 297 FMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTL 356
                +L   M    ++P+  T+ + LSA                               
Sbjct: 237 PETCTKLFCEMQSSGLMPDQVTISNILSA------------------------------- 265

Query: 357 LIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT 416
               Y +CG I+ A   FR I +K    WT M+VG   +G    AL LF +M    ++P 
Sbjct: 266 ----YFQCGYIDEACKTFREIKEKDKVCWTTMMVGCAQNGKEEDALLLFREMLLENVRPD 321

Query: 417 AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTI 476
             T   V+++C+    +  G+      +  +G++  +     LVD+  + G   +A    
Sbjct: 322 NFTISSVVSSCARLASLCQGQAVHGKAV-IFGVDHDLLVSSALVDMYSKCGETADAWIVF 380

Query: 477 ESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLI---KVAPDTIGCYVVLS 526
           + M  R N + W S++ G   +G KD+   A    +    + PD I    VLS
Sbjct: 381 KRMLTR-NVISWNSMILGYAQNG-KDLEALALYEEMLHENLKPDNITFVGVLS 431



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 143/302 (47%), Gaps = 10/302 (3%)

Query: 199 VKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMIN 258
           V+   ++  M L    P  D F    L+  ++K G +  AR++F +M  R++ SWNAM++
Sbjct: 39  VQAKRLQTHMDLHLYQPT-DTFLQNRLLHLYAKSGNLSDARDLFDKMSRRDVFSWNAMLS 97

Query: 259 GYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDAT 318
            Y K+G+V+    +FD M + D +++N++IAG+  NG   +ALE    M        D T
Sbjct: 98  AYSKSGNVEDLRAVFDQMSVHDAVSYNTVIAGFSGNGCSSQALEFFVRMQEEGFESTDYT 157

Query: 319 LVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS 378
            VS L A + L  + +G+ +H  IV         +   L  MY+KCG+++ A  +F  + 
Sbjct: 158 HVSVLHACSQLLDIKRGKQIHGRIVATSLGESVFVWNALTNMYAKCGALDQARWLFDRMV 217

Query: 379 KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR 438
            K V  W +MI G   +G       LF +M   G+ P  +T   +L+A    G +++  +
Sbjct: 218 NKNVVSWNSMISGYLQNGQPETCTKLFCEMQSSGLMPDQVTISNILSAYFQCGYIDEACK 277

Query: 439 YFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPM---RP-NFVIWMSLLSG 494
            F  +     +  T    GC      + G  E+A      M +   RP NF I   + S 
Sbjct: 278 TFREIKEKDKVCWTTMMVGC-----AQNGKEEDALLLFREMLLENVRPDNFTISSVVSSC 332

Query: 495 AR 496
           AR
Sbjct: 333 AR 334


>gi|359487704|ref|XP_002276220.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 585

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 219/579 (37%), Positives = 339/579 (58%), Gaps = 10/579 (1%)

Query: 120 PDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRV 179
           P+ FT   ++  +A    +  G+Q+H L+ K GF  + FV ++LV MYAK  ++    RV
Sbjct: 8   PNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRV 67

Query: 180 FDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLF-DEMPDRDLF----SWTCLVDGFSKCGK 234
           FD M +++LVSWN +I G+      + A+ +F D + ++ +     S + ++   +  G 
Sbjct: 68  FDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGG 127

Query: 235 VEIAREIFYRMPNRNLVS----WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAG 290
           +   R++   +    LV      N++++ Y K    D   +LF  +  RD++TWN ++ G
Sbjct: 128 LNFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMG 187

Query: 291 YELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVD 350
           +  N +F EA      M    +LP++A+  + L + A LA L++G  +H  I+K G+V +
Sbjct: 188 FVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKN 247

Query: 351 GVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCR 410
             +   LI MY+KCGS+  A  VF  I    V  WTAMI    +HG A Q ++LF  M  
Sbjct: 248 MCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLS 307

Query: 411 MGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLE 470
            G++P+ +TF+ VL+ACSH G V +G  +FN M   + + P  EHY C+VD+L R G+L+
Sbjct: 308 EGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLD 367

Query: 471 EAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYA 530
           EAK  IESMPM+P   +W +LL   R +GN  +G  AA  L ++ P   G YV+L+N+  
Sbjct: 368 EAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERLFEMEPYNPGNYVLLANMCT 427

Query: 531 AAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRN 590
            +G+ ++ +EVR +M   G RK+PG S I+ + +   F   D+SH  +DEI+  L ++  
Sbjct: 428 RSGRLEEANEVRRLMGVNGVRKEPGCSWIDVKNMTFVFTAHDRSHSSSDEIYKMLEKLEK 487

Query: 591 KLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCN 650
            +K  G+V +T  V   +E+ +E++  L  HSE+LA+AFGL+ +   SPIRI KNLR C 
Sbjct: 488 LVKKKGYVAETEFVTNHLEENEEEQG-LWYHSEKLALAFGLLTLPIDSPIRIKKNLRTCG 546

Query: 651 DCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            CH+V KL S I++REIIVRD +RFH F +G CSC D+W
Sbjct: 547 HCHTVMKLASKIFDREIIVRDINRFHRFADGFCSCGDYW 585



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 123/454 (27%), Positives = 204/454 (44%), Gaps = 67/454 (14%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           QQLH+L  K     +  + + L+ +Y      ++H A  +FD++ +  +LV +N +I  +
Sbjct: 30  QQLHSLIHKHGFDANIFVGTALVDMYAK--CADMHSAVRVFDQMPER-NLVSWNSMIVGF 86

Query: 98  VFNQRSHEALTLFCDLL-DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFD 156
             N     A+ +F D+L ++ ++P+  ++  V+   A +G +  G+Q+HG+V K G    
Sbjct: 87  FHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKFGLVPL 146

Query: 157 KFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM-- 214
            +V++SL+ MY K    D G ++F  + D+D+V+WN L+ G+V+  + E A   F  M  
Sbjct: 147 TYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRR 206

Query: 215 ----PDRDLFSWTCLVDGFSKCG---KVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVD 267
               PD   FS T L    S         I  +I      +N+    ++I  Y K G + 
Sbjct: 207 EGILPDEASFS-TVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLV 265

Query: 268 SACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVA 327
            A ++F+ +E  ++I+W +MI+ Y+L+G   + +EL E ML   + P+  T V  LSA  
Sbjct: 266 DAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSAC- 324

Query: 328 GLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK-----KKV 382
                                             S  G +E  L  F ++ K        
Sbjct: 325 ----------------------------------SHTGRVEEGLAHFNSMKKIHDMNPGP 350

Query: 383 GHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGR----R 438
            H+  M+  LG  G   +A         M MKPT   +  +L AC   G +  GR    R
Sbjct: 351 EHYACMVDLLGRAGWLDEAKRFIES---MPMKPTPSVWGALLGACRKYGNLKMGREAAER 407

Query: 439 YFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEA 472
            F M   + G      +Y  L ++  R+G LEEA
Sbjct: 408 LFEMEPYNPG------NYVLLANMCTRSGRLEEA 435


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 223/662 (33%), Positives = 358/662 (54%), Gaps = 15/662 (2%)

Query: 39  QLHALSVKTNLIYHS--GISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKC 96
           Q+HA +VK     +    +S+ LL  Y +  +  L  A  +F+ I +  S V +N LI  
Sbjct: 168 QVHAFAVKLGFDTNPFLTVSNVLLKSYCE--VRRLDLACVLFEEIPEKDS-VTFNTLITG 224

Query: 97  YVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFD 156
           Y  +    E++ LF  +      P +FT   V+K    L     G+Q+H L    GF  D
Sbjct: 225 YEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRD 284

Query: 157 KFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP- 215
             V + ++  Y+K   +   R +FD M + D VS+N +I  Y +  + E ++  F EM  
Sbjct: 285 ASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQC 344

Query: 216 ---DRDLFSWTCLVDGFSKCGKVEIAREI----FYRMPNRNLVSWNAMINGYMKAGDVDS 268
              DR  F +  ++   +    +++ R++         +  L   N++++ Y K    + 
Sbjct: 345 MGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEE 404

Query: 269 ACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAG 328
           A  +F  +  R  ++W ++I+GY   G     L+L   M   ++  + +T  + L A A 
Sbjct: 405 AELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASAS 464

Query: 329 LAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAM 388
            A L  G+ +H++I+++G + +   G+ L+ MY+KCGSI+ A+ VF  +  +    W A+
Sbjct: 465 FASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNAL 524

Query: 389 IVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYG 448
           I     +G    A+  F KM   G++P +++ +GVL ACSH G V  G  YF  M   YG
Sbjct: 525 ISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYG 584

Query: 449 IEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAA 508
           I P  +HY C++D+L R G   EA+  ++ MP  P+ ++W S+L+  R H N+ + E AA
Sbjct: 585 ITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAA 644

Query: 509 NNLIKVAP-DTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHE 567
             L  +        YV +SNIYAAAG+W+KV +V++ M++RG +K P  S +E    +H 
Sbjct: 645 EKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHV 704

Query: 568 FVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAI 627
           F   D++HP  DEI  K++E+  +++  G+ PDT+ V+  +++Q + E+ L+ HSERLA+
Sbjct: 705 FSSNDQTHPNGDEIVRKINELTAEIEREGYKPDTSSVVQDVDEQMKIES-LKYHSERLAV 763

Query: 628 AFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKD 687
           AF LI+     PI ++KNLR C DCH+  KL+S I  REI VRD SRFHHF  G CSC D
Sbjct: 764 AFALISTPEGCPIVVMKNLRACRDCHAAIKLISKIVKREITVRDTSRFHHFSEGVCSCGD 823

Query: 688 FW 689
           +W
Sbjct: 824 YW 825



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 101/404 (25%), Positives = 173/404 (42%), Gaps = 47/404 (11%)

Query: 140 EGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYV 199
           + +++   + K GF  D    + +V    + G++   R+V+D M  K+ VS N +I G+V
Sbjct: 31  DTRRVDARIIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHV 90

Query: 200 KKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM-------------- 245
           K G+V  A  LFD MPDR + +WT L+  +++    + A ++F +M              
Sbjct: 91  KTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTF 150

Query: 246 -----------------------------PNRNLVSWNAMINGYMKAGDVDSACELFDDM 276
                                         N  L   N ++  Y +   +D AC LF+++
Sbjct: 151 TTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEI 210

Query: 277 EIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGR 336
             +D +T+N++I GYE +G + E++ L   M      P+D T    L AV GL     G+
Sbjct: 211 PEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQ 270

Query: 337 WMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHG 396
            +H+  V  GF  D  +G  ++  YSK   +     +F  + +     +  +I       
Sbjct: 271 QLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQAD 330

Query: 397 MATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHY 456
               +L  F +M  MG       F  +L+  ++   +  GR+     +       +I H 
Sbjct: 331 QYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQAL--LATADSILHV 388

Query: 457 G-CLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
           G  LVD+  +    EEA+   +S+P R   V W +L+SG    G
Sbjct: 389 GNSLVDMYAKCEMFEEAELIFKSLPQRTT-VSWTALISGYVQKG 431



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 114/435 (26%), Positives = 175/435 (40%), Gaps = 118/435 (27%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSL--VLYNLLIK 95
           QQLHALSV T     + + +++L  Y   H   L   R +FD +   P L  V YN++I 
Sbjct: 270 QQLHALSVTTGFSRDASVGNQILDFY-SKHDRVLE-TRMLFDEM---PELDFVSYNVVIS 324

Query: 96  CYVFNQRSHEALTLF----CDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKL 151
            Y    +   +L  F    C   DR     NF    ++  AA L +++ G+Q+H      
Sbjct: 325 SYSQADQYEASLHFFREMQCMGFDR----RNFPFATMLSIAANLSSLQMGRQLHCQALLA 380

Query: 152 GFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLF 211
                  V +SLV MYAK    +    +F ++  +  VSW  LI GYV+KG     +KLF
Sbjct: 381 TADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLF 440

Query: 212 DEMPDRDL---------------------------------------FSWTCLVDGFSKC 232
            +M   +L                                       FS + LVD ++KC
Sbjct: 441 TKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKC 500

Query: 233 GKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYE 292
           G ++ A ++F  MP+RN VSWNA+I+ +   GD ++A                       
Sbjct: 501 GSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAI---------------------- 538

Query: 293 LNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV 352
             G F + +E         + P+  +++  L+A +                  GFV    
Sbjct: 539 --GAFAKMIE-------SGLQPDSVSILGVLTACSHC----------------GFVEQ-- 571

Query: 353 LGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG 412
            GT   Q          A++    I+ KK  H+  M+  LG +G   +A  L ++   M 
Sbjct: 572 -GTEYFQ----------AMSPIYGITPKK-KHYACMLDLLGRNGRFAEAEKLMDE---MP 616

Query: 413 MKPTAITFIGVLNAC 427
            +P  I +  VLNAC
Sbjct: 617 FEPDEIMWSSVLNAC 631


>gi|115451769|ref|NP_001049485.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|108707037|gb|ABF94832.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113547956|dbj|BAF11399.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|125585525|gb|EAZ26189.1| hypothetical protein OsJ_10058 [Oryza sativa Japonica Group]
 gi|215706461|dbj|BAG93317.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 641

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 216/558 (38%), Positives = 315/558 (56%), Gaps = 48/558 (8%)

Query: 179 VFDAMDDKDLVSWNCLIDGYVKKGE-VEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEI 237
           +F ++   D+ S N LI    +    +  A +LFD MP RD F+W+ LV G+++ G+ E 
Sbjct: 85  LFSSIAAPDICSHNTLISALSRSPRHLPSARELFDRMPQRDHFAWSALVSGYTRHGQPEA 144

Query: 238 AREIFYRMPNR---------------------------------------------NLVS 252
           A  ++ RM                                                + V 
Sbjct: 145 ALALYRRMQEEPGNDGADNEFTASSALAAAAAARCGRAGRELHCHVVRRGIDAAGGDAVL 204

Query: 253 WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETML-IGD 311
           W+A+ + Y K G VD A  +FD M +RD ++W +M+  Y   GR  E   L   ML    
Sbjct: 205 WSALADMYAKCGRVDDARRVFDRMPVRDAVSWTAMVERYFDGGRGGEGFRLFLHMLRTRG 264

Query: 312 VLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESAL 371
           V PN+ T    L A A  AV + GR +H  + K+G        + L++MYSKCG + SA+
Sbjct: 265 VRPNEFTYAGVLRACAQFAVESFGRQVHGRMAKSGTGDSCFAESALLRMYSKCGDMGSAV 324

Query: 372 TVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAG 431
            VF A++K  +  WTA+I G   +G   +AL  F+   R G+KP  +TF+GVL+AC+HAG
Sbjct: 325 RVFEAMAKPDLVSWTAVISGYAQNGQPEEALRYFDMFLRSGIKPDHVTFVGVLSACAHAG 384

Query: 432 LVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSL 491
           LV+ G   F+ +   Y IE T +HY C++D+L R+G  E A+  I +M ++PN  +W SL
Sbjct: 385 LVDKGLEIFHSIKEQYCIEHTADHYACVIDLLSRSGQFERAEKMIGNMAVKPNKFLWASL 444

Query: 492 LSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFR 551
           L G R H N  +   AA  L ++ P+    YV L+NIYA+ G +D+V +VR +M+ +G  
Sbjct: 445 LGGCRIHKNVGLARRAAEALFEIEPENPATYVTLANIYASVGLFDEVEDVRRIMESKGIT 504

Query: 552 KDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQ 611
           K P SS IE    +H F+VGDKSHP+ DEI++ L ++  K+   G+V D   VL  +ED+
Sbjct: 505 KMPASSWIEVGRRVHVFLVGDKSHPKADEIYALLKKLYVKMVEEGYVADIEFVLHDVEDE 564

Query: 612 KEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRD 671
            +KE ++  HSERLA+AFG+I     SPI++ KNLR+C DCH+  KL+S I  R+IIVRD
Sbjct: 565 -QKEQDIGYHSERLAVAFGIIATPEGSPIKVFKNLRICGDCHAAIKLISQIVQRDIIVRD 623

Query: 672 NSRFHHFKNGSCSCKDFW 689
           ++RFHHFK+G CSC+D+W
Sbjct: 624 SNRFHHFKDGICSCRDYW 641



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 108/402 (26%), Positives = 185/402 (46%), Gaps = 46/402 (11%)

Query: 69  NNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDN------ 122
            +L  AR +FDR+ Q      ++ L+  Y  + +   AL L+  + +    P N      
Sbjct: 109 RHLPSARELFDRMPQRDHFA-WSALVSGYTRHGQPEAALALYRRMQEE---PGNDGADNE 164

Query: 123 FTLPCVIKGAARLGAIKEGKQIHGLVFKLGF---GFDKFVLSSLVSMYAKFGEIDLGRRV 179
           FT    +  AA     + G+++H  V + G    G D  + S+L  MYAK G +D  RRV
Sbjct: 165 FTASSALAAAAAARCGRAGRELHCHVVRRGIDAAGGDAVLWSALADMYAKCGRVDDARRV 224

Query: 180 FDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM-------PDRDLFSWTCLVDGFSKC 232
           FD M  +D VSW  +++ Y   G      +LF  M       P+   F++  ++   ++ 
Sbjct: 225 FDRMPVRDAVSWTAMVERYFDGGRGGEGFRLFLHMLRTRGVRPNE--FTYAGVLRACAQF 282

Query: 233 GKVEIAREIFYRMPNR----NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMI 288
                 R++  RM       +  + +A++  Y K GD+ SA  +F+ M   DL++W ++I
Sbjct: 283 AVESFGRQVHGRMAKSGTGDSCFAESALLRMYSKCGDMGSAVRVFEAMAKPDLVSWTAVI 342

Query: 289 AGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKG-RWMHSYIVKNGF 347
           +GY  NG+  EAL   +  L   + P+  T V  LSA A   +++KG    HS  +K  +
Sbjct: 343 SGYAQNGQPEEALRYFDMFLRSGIKPDHVTFVGVLSACAHAGLVDKGLEIFHS--IKEQY 400

Query: 348 VVDGVLG--TLLIQMYSKCGSIESALTVFRAISKKKVGH-WTAMIVGLGMH---GMATQA 401
            ++        +I + S+ G  E A  +   ++ K     W +++ G  +H   G+A +A
Sbjct: 401 CIEHTADHYACVIDLLSRSGQFERAEKMIGNMAVKPNKFLWASLLGGCRIHKNVGLARRA 460

Query: 402 LD-LFNKMCRMGMKP-TAITFIGVLNACSHAGL---VNDGRR 438
            + LF       ++P    T++ + N  +  GL   V D RR
Sbjct: 461 AEALFE------IEPENPATYVTLANIYASVGLFDEVEDVRR 496


>gi|147833186|emb|CAN68635.1| hypothetical protein VITISV_030802 [Vitis vinifera]
          Length = 767

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 247/707 (34%), Positives = 389/707 (55%), Gaps = 64/707 (9%)

Query: 37  TQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHP-SLVLYNLLIK 95
           T Q+HA   +  L      ++ L+  Y      + +YA  +FD + +    +V +  LI 
Sbjct: 71  TLQVHAYLTRLGLAADRFSAAALVDAY--GKCGHAYYAAQVFDEMPEGSVDVVSWTALIS 128

Query: 96  CYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAI-------------KEGK 142
            Y  N    EA   F  +  R++   + +  C +     LGA+             + G 
Sbjct: 129 AYSSNGCVDEAFXAFGRM--RWMRGWDGSECCGVD-VVSLGALVSACAVGCGSNCLRRGS 185

Query: 143 QIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAM--DDKDLVSWNCLIDGYVK 200
            +HGLV K GFG    + +S+V MY+   ++    RVF+ +  + +D+VSWN LI G+  
Sbjct: 186 AVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFXL 245

Query: 201 KGEVEVAMKLFDEM---------PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR--- 248
            GE E A++ F++M         P+R   +   L+   ++ G VE +  +   + +R   
Sbjct: 246 NGEAERALRTFEDMVSEGTSAVEPNR--VTVIALLKSCAELGCVETSSWVHEYISSRHSS 303

Query: 249 -----NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALEL 303
                ++V   A+++ + + G++  A E+FD +E ++++ W++MIAGYE      EAL L
Sbjct: 304 LLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRL 363

Query: 304 LETMLIG------DVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLL 357
              ML+       +V PN  TLVS ++A + L        +H Y V  G   D  + + L
Sbjct: 364 FRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSASMIHKYAVATGLDQDARIASAL 423

Query: 358 IQMYSKCGSIESALTVFRAI--SKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKP 415
           I M +KCG IE    VF  +  S + V  W++MI   G+HG   +AL+LF++M   G +P
Sbjct: 424 IDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEP 483

Query: 416 TAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKST 475
             IT+I VL+ACSHAGLV  G+  FN M  DYG+ PT +HY CLVD+L R G+L+EA + 
Sbjct: 484 NEITYISVLSACSHAGLVEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLDEAHNV 543

Query: 476 IESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQW 535
           I +MP++ +  +W SLL+    HGN  +GE     ++ +  +++G +V+L+N+Y  AG+W
Sbjct: 544 ILNMPIKADLALWGSLLAACHLHGNCKLGEIVEKKILSLDSNSVGHHVLLANMYEDAGRW 603

Query: 536 DKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKL-KA 594
           D V  +R  +++ G RK PG S IE    ++ F+  D+SHP+++ I+ +L  +  ++ KA
Sbjct: 604 DDVVRMRVELRRSGLRKIPGQSFIEIGNEVYSFMAEDRSHPESEMIYKELDGLDERVRKA 663

Query: 595 AGHVPDTTQVLLCIEDQKEKE--AELENHSERLAIAFGLI----------NVKSRSPIRI 642
           A +V +T    L +ED          + HSERLAIAFGLI          ++++ +PIRI
Sbjct: 664 AKYVTETG---LNVEDGDIAGLIXRCKYHSERLAIAFGLIMIDRHSTCSCSLRTATPIRI 720

Query: 643 VKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            KNLRVC DCH+ TKL+S + +RE+IVRD  RFHHF++G CSC D+W
Sbjct: 721 TKNLRVCRDCHAYTKLVSKVIDRELIVRDAHRFHHFRDGFCSCGDYW 767



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 127/443 (28%), Positives = 196/443 (44%), Gaps = 51/443 (11%)

Query: 100 NQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFV 159
            Q    ALT F  +    +  +NFT P ++K  A L  +    Q+H  + +LG   D+F 
Sbjct: 30  TQNPQTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLPTLQVHAYLTRLGLAADRFS 89

Query: 160 LSSLVSMYAKFGEIDLGRRVFDAMDDK--DLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
            ++LV  Y K G      +VFD M +   D+VSW  LI  Y   G V+ A   F  M  R
Sbjct: 90  AAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNGCVDEAFXAFGRM--R 147

Query: 218 DLFSW----TCLVDGFS----------KCGKVEIARE-------IFYRMPNRNLVSWNAM 256
            +  W     C VD  S           CG   + R        + Y       +  N+M
Sbjct: 148 WMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHGLVVKYGFGVSTHLG-NSM 206

Query: 257 INGYMKAGDVDSACELFDDMEI--RDLITWNSMIAGYELNGRFMEALELLETML---IGD 311
           ++ Y    DV  A  +F+ + I  RD+++WNS+I+G+ LNG    AL   E M+      
Sbjct: 207 VHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFXLNGEAERALRTFEDMVSEGTSA 266

Query: 312 VLPNDATLVSALSAVAGLAVLNKGRWMHSYIVK--NGFVV--DGVLGTLLIQMYSKCGSI 367
           V PN  T+++ L + A L  +    W+H YI    +  +V  D V+ T L+ M+++CG++
Sbjct: 267 VEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGNL 326

Query: 368 ESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG------MKPTAITFI 421
             A  +F  +  K V  W+AMI G        +AL LF +M   G      +KP A+T +
Sbjct: 327 ALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLV 386

Query: 422 GVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEH----YGCLVDILCRTGYLEEAKSTIE 477
            V+ ACS  G           MI+ Y +   ++        L+D+  + G +E  +    
Sbjct: 387 SVIAACSRLGASRSAS-----MIHKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFS 441

Query: 478 SMPMRPNFVI-WMSLLSGARNHG 499
            M      V+ W S++     HG
Sbjct: 442 EMDESTRTVVSWSSMIGAEGIHG 464



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 53/132 (40%), Gaps = 3/132 (2%)

Query: 279 RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWM 338
           +D   WNS+IA          AL     M    V  N+ T  + L A A L  L     +
Sbjct: 16  KDTFHWNSLIAKNATQNP-QTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLPTLQV 74

Query: 339 HSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVG--HWTAMIVGLGMHG 396
           H+Y+ + G   D      L+  Y KCG    A  VF  + +  V    WTA+I     +G
Sbjct: 75  HAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNG 134

Query: 397 MATQALDLFNKM 408
              +A   F +M
Sbjct: 135 CVDEAFXAFGRM 146


>gi|115440653|ref|NP_001044606.1| Os01g0814300 [Oryza sativa Japonica Group]
 gi|20161481|dbj|BAB90405.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|56785052|dbj|BAD82691.1| PPR repeat containing protein-like [Oryza sativa Japonica Group]
 gi|113534137|dbj|BAF06520.1| Os01g0814300 [Oryza sativa Japonica Group]
          Length = 604

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 206/437 (47%), Positives = 285/437 (65%), Gaps = 3/437 (0%)

Query: 254 NAMINGYMKAGDVDSACELFDDM-EIRDLITWNSMIAGYELNGRFMEALELLETMLIGDV 312
             ++N Y K  +V  A  +FD M   ++L  W++MI GY   G   EAL L   M   DV
Sbjct: 170 TGLLNLYAKCEEVALARTVFDGMVGDKNLAAWSAMIGGYSRVGMVNEALGLFREMQAADV 229

Query: 313 LPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALT 372
            P++ T+VS +SA A    L+ GRW+H++I + G  VD  L T LI MY+KCG IE A  
Sbjct: 230 NPDEVTMVSVISACAKAGALDLGRWVHAFIDRKGITVDLELSTALIDMYAKCGLIERAKG 289

Query: 373 VFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGL 432
           VF A++++    W+AMIVGL +HG+   AL LF++M  + ++P  +TFIGVL+AC+H+GL
Sbjct: 290 VFDAMAERDTKAWSAMIVGLAIHGLVEVALKLFSRMLELKVRPNNVTFIGVLSACAHSGL 349

Query: 433 VNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLL 492
           VN+GRRY++ M  + GI+P++E+YGC+VD+ CR+  L+EA S +  M + PN VIW +LL
Sbjct: 350 VNEGRRYWSTM-QELGIKPSMENYGCMVDLFCRSSLLDEAYSFVTGMAIPPNSVIWRTLL 408

Query: 493 SGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRK 552
             ++N    DI + A+  L+++ P     YV+LSN+YA+  QWD+VS +R+ MK+     
Sbjct: 409 VASKNSNRFDIVQSASKKLLELEPCNPENYVLLSNLYASNSQWDRVSYMRKKMKENNVNV 468

Query: 553 DPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQK 612
             G SSIE  G LH+FVV D SHP+  EI   L E+ +++  AGH P T  VL  +  ++
Sbjct: 469 VAGCSSIEINGYLHKFVVSDDSHPEIKEIRLLLREIADRVVRAGHKPWTAAVLHDV-GEE 527

Query: 613 EKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDN 672
           EKE  L  HSERLAIA+GL+  K+   IR+VKNLR C DCH V K++S  Y+REIIVRD 
Sbjct: 528 EKEVALCEHSERLAIAYGLLKTKAPHVIRVVKNLRFCPDCHEVAKIVSKSYDREIIVRDR 587

Query: 673 SRFHHFKNGSCSCKDFW 689
            RFH F  GSCSCKDFW
Sbjct: 588 VRFHRFVEGSCSCKDFW 604



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/278 (32%), Positives = 146/278 (52%), Gaps = 16/278 (5%)

Query: 73  YARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFL-----LPDNFTLPC 127
           YAR++FD+I + P+   YN LI+       +  A      +  R L     LP++FTL  
Sbjct: 79  YARNLFDQIPE-PTAFCYNSLIRALSSAAGAAPAADTVL-VYRRMLRAGSPLPNSFTLAF 136

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAM-DDK 186
            +K  + + A+ EG+Q+H   F+ G     +V + L+++YAK  E+ L R VFD M  DK
Sbjct: 137 ALKACSVVPALGEGRQLHSQAFRRGLEPSPYVQTGLLNLYAKCEEVALARTVFDGMVGDK 196

Query: 187 DLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIF 242
           +L +W+ +I GY + G V  A+ LF EM   D+     +   ++   +K G +++ R + 
Sbjct: 197 NLAAWSAMIGGYSRVGMVNEALGLFREMQAADVNPDEVTMVSVISACAKAGALDLGRWVH 256

Query: 243 YRMPNR----NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFM 298
             +  +    +L    A+I+ Y K G ++ A  +FD M  RD   W++MI G  ++G   
Sbjct: 257 AFIDRKGITVDLELSTALIDMYAKCGLIERAKGVFDAMAERDTKAWSAMIVGLAIHGLVE 316

Query: 299 EALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGR 336
            AL+L   ML   V PN+ T +  LSA A   ++N+GR
Sbjct: 317 VALKLFSRMLELKVRPNNVTFIGVLSACAHSGLVNEGR 354



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 112/220 (50%), Gaps = 5/220 (2%)

Query: 310 GDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIES 369
           G  LPN  TL  AL A + +  L +GR +HS   + G      + T L+ +Y+KC  +  
Sbjct: 125 GSPLPNSFTLAFALKACSVVPALGEGRQLHSQAFRRGLEPSPYVQTGLLNLYAKCEEVAL 184

Query: 370 ALTVFRA-ISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACS 428
           A TVF   +  K +  W+AMI G    GM  +AL LF +M    + P  +T + V++AC+
Sbjct: 185 ARTVFDGMVGDKNLAAWSAMIGGYSRVGMVNEALGLFREMQAADVNPDEVTMVSVISACA 244

Query: 429 HAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIW 488
            AG ++ G R+ +  I+  GI   +E    L+D+  + G +E AK   ++M  R +   W
Sbjct: 245 KAGALDLG-RWVHAFIDRKGITVDLELSTALIDMYAKCGLIERAKGVFDAMAER-DTKAW 302

Query: 489 MSLLSGARNHGNKDIGEYAANNL--IKVAPDTIGCYVVLS 526
            +++ G   HG  ++     + +  +KV P+ +    VLS
Sbjct: 303 SAMIVGLAIHGLVEVALKLFSRMLELKVRPNNVTFIGVLS 342



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 134/271 (49%), Gaps = 11/271 (4%)

Query: 36  ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIK 95
           E +QLH+ + +  L     + + LL+LY       +  AR++FD ++   +L  ++ +I 
Sbjct: 149 EGRQLHSQAFRRGLEPSPYVQTGLLNLYAK--CEEVALARTVFDGMVGDKNLAAWSAMIG 206

Query: 96  CYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF 155
            Y      +EAL LF ++    + PD  T+  VI   A+ GA+  G+ +H  + + G   
Sbjct: 207 GYSRVGMVNEALGLFREMQAADVNPDEVTMVSVISACAKAGALDLGRWVHAFIDRKGITV 266

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP 215
           D  + ++L+ MYAK G I+  + VFDAM ++D  +W+ +I G    G VEVA+KLF  M 
Sbjct: 267 DLELSTALIDMYAKCGLIERAKGVFDAMAERDTKAWSAMIVGLAIHGLVEVALKLFSRML 326

Query: 216 DRDL----FSWTCLVDGFSKCGKVEIAREIFYRMP----NRNLVSWNAMINGYMKAGDVD 267
           +  +     ++  ++   +  G V   R  +  M       ++ ++  M++ + ++  +D
Sbjct: 327 ELKVRPNNVTFIGVLSACAHSGLVNEGRRYWSTMQELGIKPSMENYGCMVDLFCRSSLLD 386

Query: 268 SACELFDDMEI-RDLITWNSMIAGYELNGRF 297
            A      M I  + + W +++   + + RF
Sbjct: 387 EAYSFVTGMAIPPNSVIWRTLLVASKNSNRF 417


>gi|302771271|ref|XP_002969054.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
 gi|300163559|gb|EFJ30170.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
          Length = 696

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 234/677 (34%), Positives = 369/677 (54%), Gaps = 29/677 (4%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           +E ++LH   + T       + + LL +Y      +L  A+ +F+  ++   L  ++ +I
Sbjct: 27  EEGRRLHEHLIITGFRTDIPLETALLQMYAK--CGSLDDAKRVFEG-MEIKDLFAWSSII 83

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
             Y    R   A+ L+  ++   + P+  T  C + G A +  + +G+ IH  +      
Sbjct: 84  SAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGGCASVAGLADGRAIHQRILASKVP 143

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
            D  +  SL++MY K  E+   R+VF+ M  +++ S+  +I  YV+ GE   A++LF  M
Sbjct: 144 QDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMISAYVQAGEHAEALELFSRM 203

Query: 215 P-----DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR----NLVSWNAMINGYMKAGD 265
                 + + +++  ++      G +E  R++   + +R    N+V  NA++  Y K G 
Sbjct: 204 SKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLASRGFDTNVVVQNALVTMYGKCGS 263

Query: 266 VDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSA 325
              A ++FD M  R++I+W SMIA Y  +G   EAL L + M   DV P+  +  SAL+A
Sbjct: 264 PVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALNLFKRM---DVEPSGVSFSSALNA 320

Query: 326 VAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHW 385
            A L  L++GR +H  +V+   +    + T L+ MY++CGS++ A  VF  +  +     
Sbjct: 321 CALLGALDEGREIHHRVVE-AHLASPQMETSLLSMYARCGSLDDARRVFNRMKTRDAFSC 379

Query: 386 TAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN 445
            AMI     HG   QAL ++ +M + G+    ITF+ VL ACSH  LV D R +F  ++ 
Sbjct: 380 NAMIAAFTQHGRKKQALRIYRRMEQEGIPADGITFVSVLVACSHTSLVADCRDFFQSLVM 439

Query: 446 DYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGE 505
           D+G+ P +EHY C+VD+L R+G L +A+  +E+MP + + V WM+LLSG + HG+ + GE
Sbjct: 440 DHGVVPLVEHYLCMVDVLGRSGRLGDAEELVETMPYQTDAVAWMTLLSGCKRHGDLNRGE 499

Query: 506 YAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVL 565
            AA  + ++AP     YV LSN+YAAA ++D    VR+ M++RG       S IE    L
Sbjct: 500 RAARKVFELAPAETLPYVFLSNMYAAAKRFDDARRVRKEMEERGVTTPVAVSYIEIDNEL 559

Query: 566 HEFVVGDKSHPQT-------DEIHSKLSEMRNKLKAAGHVPDTTQVLLCIE---DQKEKE 615
           H F  G +   Q        + + S L E+   +K AG+VPDT +V L  +    ++EK+
Sbjct: 560 HMFTSGGRDEQQEGHDGRTMERVRSLLLELLEPMKQAGYVPDTREVYLEQQGGTSEEEKQ 619

Query: 616 AELENHSERLAIAFGLINVK---SRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDN 672
             L  HSERLAIA+GLI  K      P+R+V + RVC+DCHS  KLLS I  + I VRD 
Sbjct: 620 RSLCFHSERLAIAYGLIAAKDPDDSRPLRVVNSHRVCSDCHSAIKLLSDIIEKTIFVRDG 679

Query: 673 SRFHHFKNGSCSCKDFW 689
           +RFHHF+ G+CSC D W
Sbjct: 680 NRFHHFEKGACSCGDHW 696



 Score =  202 bits (515), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 117/397 (29%), Positives = 213/397 (53%), Gaps = 17/397 (4%)

Query: 115 DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEID 174
           +R ++ D F +  ++    +L A++EG+++H  +   GF  D  + ++L+ MYAK G +D
Sbjct: 3   ERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGSLD 62

Query: 175 LGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM----PDRDLFSWTCLVDGFS 230
             +RVF+ M+ KDL +W+ +I  Y + G  E+A+ L+  M     + ++ ++ C + G +
Sbjct: 63  DAKRVFEGMEIKDLFAWSSIISAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGGCA 122

Query: 231 KCGKVEIAREIFYRM-----PNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWN 285
               +   R I  R+     P  +++  ++++N Y+K  ++  A ++F+ M+ R++ ++ 
Sbjct: 123 SVAGLADGRAIHQRILASKVPQDDVLQ-DSLLNMYLKCDEMVEARKVFEGMKARNVRSYT 181

Query: 286 SMIAGYELNGRFMEALELLETM-LIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVK 344
           +MI+ Y   G   EALEL   M  +  + PN  T  + L AV GL  L KGR +H ++  
Sbjct: 182 AMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLAS 241

Query: 345 NGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDL 404
            GF  + V+   L+ MY KCGS   A  VF +++ + V  WT+MI     HG   +AL+L
Sbjct: 242 RGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALNL 301

Query: 405 FNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILC 464
           F    RM ++P+ ++F   LNAC+  G +++GR   + ++  +   P +E    L+ +  
Sbjct: 302 FK---RMDVEPSGVSFSSALNACALLGALDEGREIHHRVVEAHLASPQME--TSLLSMYA 356

Query: 465 RTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNK 501
           R G L++A+     M  R  F    ++++    HG K
Sbjct: 357 RCGSLDDARRVFNRMKTRDAFSC-NAMIAAFTQHGRK 392



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 107/241 (44%), Gaps = 4/241 (1%)

Query: 312 VLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESAL 371
           ++ +   + S ++A   L  L +GR +H +++  GF  D  L T L+QMY+KCGS++ A 
Sbjct: 6   IVADKFIVTSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGSLDDAK 65

Query: 372 TVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAG 431
            VF  +  K +  W+++I      G    A+ L+ +M   G++P  +TF   L  C+   
Sbjct: 66  RVFEGMEIKDLFAWSSIISAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGGCASVA 125

Query: 432 LVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSL 491
            + DGR     ++     +  +     L+++  +   + EA+   E M  R N   + ++
Sbjct: 126 GLADGRAIHQRILASKVPQDDVLQ-DSLLNMYLKCDEMVEARKVFEGMKAR-NVRSYTAM 183

Query: 492 LSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAA--GQWDKVSEVREMMKKRG 549
           +S     G         + + KV       Y   + + A    G  +K  +V   +  RG
Sbjct: 184 ISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLASRG 243

Query: 550 F 550
           F
Sbjct: 244 F 244


>gi|413937268|gb|AFW71819.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 830

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 233/659 (35%), Positives = 367/659 (55%), Gaps = 12/659 (1%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           Q +HA S+K        + + L+++Y    +  +  AR +F R ++   +V +N L+   
Sbjct: 177 QHVHAQSIKFGCCSTVFVCNSLMNMYAKCGL--VEEARVVFCR-METRDMVSWNTLMAGL 233

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
           V N R  EAL LF D      +    T   VI   A L  +   +Q+H  V K GF    
Sbjct: 234 VLNGRDLEALQLFHDSRSSITMLTESTYSTVINLCANLKHLGLARQLHSSVLKHGFHSYG 293

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMD-DKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD 216
            V+++L+  Y K G++D    VF  M   +++VSW  +IDG ++ G++ +A  LF  M +
Sbjct: 294 NVMTALMDAYNKAGQLDKALDVFLLMSGSQNVVSWTAMIDGCIQNGDIPLAAALFSRMRE 353

Query: 217 RDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACEL 272
             +     +++ ++         +I  ++             A++  Y K    + A  +
Sbjct: 354 DGVAPNDLTYSTILTVSEASFPPQIHAQVIKTNYECTPTVGTALMVSYSKLCSTEEALSI 413

Query: 273 FDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAV- 331
           F  ++ +D+++W++M+  Y   G    A      M +  + PN+ T+ SA+ A A  A  
Sbjct: 414 FKMIDQKDVVSWSAMLTCYAQAGDCNGATNAFIKMTMHGLKPNEFTISSAIDACASPAAG 473

Query: 332 LNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVG 391
           ++ GR  H+  +K+       + + L+ MY++ GSIE+A  VF   + + +  W +M+ G
Sbjct: 474 VDLGRQFHAISIKHRCHDALCVSSALVSMYARKGSIENAQCVFERQTDRDLLSWNSMLSG 533

Query: 392 LGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP 451
              HG + +ALD+F +M   G+    +TF+ V+  C+HAGLV +G++YF++M+ DYGI P
Sbjct: 534 YAQHGYSQKALDVFRQMEVEGIDMDGLTFLSVIMGCAHAGLVEEGQQYFDLMVRDYGITP 593

Query: 452 TIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNL 511
           T++HY C+VD+  R G L+E  S IE MP      IW +LL   R H N ++G+ AA  L
Sbjct: 594 TMDHYACMVDLYSRAGKLDETMSLIEGMPFPAGPTIWRALLGACRVHKNVELGKLAAEKL 653

Query: 512 IKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVG 571
           + + P     YV+LSNIY+AAG+W +  EVR++M  +  RK+ G S I+ +  +H F+  
Sbjct: 654 LSLEPLDSATYVLLSNIYSAAGKWKEKDEVRKLMDTKKVRKEAGCSWIQIKNKVHFFIAS 713

Query: 572 DKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCI-EDQKEKEAELENHSERLAIAFG 630
           DKSHP +++I++KL  M  KLK  G+ PDT+ V   + EDQ  KEA L  HSERLA+AFG
Sbjct: 714 DKSHPLSEQIYAKLRAMTAKLKQEGYCPDTSFVPHDVAEDQ--KEAMLAMHSERLALAFG 771

Query: 631 LINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           LI     +P+ I KNLRV  D H+V K++S I +REI++RD  RFHHFK+G CSC DFW
Sbjct: 772 LIATPPAAPLHIFKNLRVSGDGHTVMKMVSEIEDREIVMRDCCRFHHFKSGVCSCGDFW 830



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 131/473 (27%), Positives = 225/473 (47%), Gaps = 20/473 (4%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHIN--NLHYARSIFDRILQHPSLVLYNLLIK 95
           +QLHAL V+     H     R+ +  VD ++N  ++   R +F+ +L+  ++V +  L+ 
Sbjct: 75  KQLHALCVRCG---HDHGDIRVGTSLVDMYMNWHSVLDGRKVFEGMLKR-NVVTWTSLLT 130

Query: 96  CYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF 155
            Y+      + ++LF  +    + P+ FT   V+   A  G +  G+ +H    K G   
Sbjct: 131 GYIQAGVLLDVMSLFFRMRAEGVWPNPFTFSSVLSMVASQGMVDLGQHVHAQSIKFGCCS 190

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLF-DEM 214
             FV +SL++MYAK G ++  R VF  M+ +D+VSWN L+ G V  G    A++LF D  
Sbjct: 191 TVFVCNSLMNMYAKCGLVEEARVVFCRMETRDMVSWNTLMAGLVLNGRDLEALQLFHDSR 250

Query: 215 PDRDLFSWTCLVDGFSKCGKVE---IAREIFYRMPNRNLVSW----NAMINGYMKAGDVD 267
               + + +      + C  ++   +AR++   +      S+     A+++ Y KAG +D
Sbjct: 251 SSITMLTESTYSTVINLCANLKHLGLARQLHSSVLKHGFHSYGNVMTALMDAYNKAGQLD 310

Query: 268 SACELFDDME-IRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326
            A ++F  M   +++++W +MI G   NG    A  L   M    V PND T  + L+  
Sbjct: 311 KALDVFLLMSGSQNVVSWTAMIDGCIQNGDIPLAAALFSRMREDGVAPNDLTYSTILT-- 368

Query: 327 AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWT 386
             ++  +    +H+ ++K  +     +GT L+  YSK  S E AL++F+ I +K V  W+
Sbjct: 369 --VSEASFPPQIHAQVIKTNYECTPTVGTALMVSYSKLCSTEEALSIFKMIDQKDVVSWS 426

Query: 387 AMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIND 446
           AM+      G    A + F KM   G+KP   T    ++AC+      D  R F+ +   
Sbjct: 427 AMLTCYAQAGDCNGATNAFIKMTMHGLKPNEFTISSAIDACASPAAGVDLGRQFHAISIK 486

Query: 447 YGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
           +     +     LV +  R G +E A+   E    R + + W S+LSG   HG
Sbjct: 487 HRCHDALCVSSALVSMYARKGSIENAQCVFERQTDR-DLLSWNSMLSGYAQHG 538



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 116/250 (46%), Gaps = 7/250 (2%)

Query: 254 NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL 313
            ++++ YM    V    ++F+ M  R+++TW S++ GY   G  ++ + L   M    V 
Sbjct: 95  TSLVDMYMNWHSVLDGRKVFEGMLKRNVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEGVW 154

Query: 314 PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTV 373
           PN  T  S LS VA   +++ G+ +H+  +K G      +   L+ MY+KCG +E A  V
Sbjct: 155 PNPFTFSSVLSMVASQGMVDLGQHVHAQSIKFGCCSTVFVCNSLMNMYAKCGLVEEARVV 214

Query: 374 FRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACS---HA 430
           F  +  + +  W  ++ GL ++G   +AL LF+         T  T+  V+N C+   H 
Sbjct: 215 FCRMETRDMVSWNTLMAGLVLNGRDLEALQLFHDSRSSITMLTESTYSTVINLCANLKHL 274

Query: 431 GLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMS 490
           GL     R  +  +  +G          L+D   + G L++A      M    N V W +
Sbjct: 275 GLA----RQLHSSVLKHGFHSYGNVMTALMDAYNKAGQLDKALDVFLLMSGSQNVVSWTA 330

Query: 491 LLSGARNHGN 500
           ++ G   +G+
Sbjct: 331 MIDGCIQNGD 340


>gi|48475086|gb|AAT44155.1| hypothetical protein, contains pentrtricopeptide (PPR) repeat
           [Oryza sativa Japonica Group]
 gi|125568883|gb|EAZ10398.1| hypothetical protein OsJ_00231 [Oryza sativa Japonica Group]
          Length = 836

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 248/787 (31%), Positives = 385/787 (48%), Gaps = 127/787 (16%)

Query: 23  LHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRIL 82
           LH +        +   QLH+L+V+T L     ++  L+ L     +  L    S   R+L
Sbjct: 57  LHGDDTDHRVARRLAPQLHSLAVRTGLSRDPRVTCALVDL-----LARLGRGPSCA-RLL 110

Query: 83  QHPS------LVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLG 136
              +       VL+N  +      +   EA+ +F ++  R +  D +T   V+    R G
Sbjct: 111 HEAAEDGAKDAVLWNKHVAMLAEAEEWDEAIAVFREMQARGVPADGYTCARVLHACGRAG 170

Query: 137 AIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAM------------- 183
           A++EG+ +H    KL       V   L  MYA+  ++    RV DAM             
Sbjct: 171 ALREGRAVHAYALKLALDAHPLVPGFLAGMYAENADVAAATRVLDAMGAGSVVPWNAVVA 230

Query: 184 --------DD--------------KDLVSWNCLIDGYVKKGEVEVAMKLFDEM------P 215
                   DD               ++ +WN ++ G  + G    A+ +   M      P
Sbjct: 231 CCARLGLVDDALELAARMSRSGPEPNVATWNTVLSGCSRHGRDREALGVVASMLKQGLRP 290

Query: 216 DR---------------------------------DLFSWTCLVDGFSKCGKVEIAREIF 242
           D                                  D+++ T LVD ++KCG+++ A+++ 
Sbjct: 291 DATTVSSLLKSVANTGLLRHGMEIHCFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVL 350

Query: 243 YRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIR----DLITWNSMIAGYELNGRFM 298
             + +RNL +WN+++ GY  AG  D A EL + M+      D+ TWN +I GY +NG+  
Sbjct: 351 DALEHRNLTTWNSLVAGYANAGRFDIALELVELMKKNRLDPDITTWNGLITGYSMNGQSS 410

Query: 299 EALELLETMLIGDVLPNDATLVSALS---------------------------------- 324
           +A+ LL  +    V PN  +  S +S                                  
Sbjct: 411 QAVLLLRQIKAAGVTPNVVSWTSLISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLL 470

Query: 325 -AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVG 383
            A AGLA+  KG+ +H + ++  +  D V+ T LI MYSK GS+ SA  +F +I +K + 
Sbjct: 471 RACAGLALQKKGKELHCFALRRAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNLV 530

Query: 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMM 443
              AM+ GL +HG   +A++LF+ M   G+KP +ITF  +L AC   GLV +G  YF+ M
Sbjct: 531 LCNAMLTGLAVHGQGREAIELFHDMWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDSM 590

Query: 444 INDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDI 503
              YG++PT E+Y C+VD+L R GYL+EA   IE  P+ P    W +LL+G   HGN  +
Sbjct: 591 ETKYGVKPTTENYACMVDLLARCGYLDEAMDFIERSPIDPGASHWGALLTGCSIHGNLAL 650

Query: 504 GEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRG 563
            E AA NL  + P     Y+++ N+Y     +D+   ++  MK RG    PG S I+   
Sbjct: 651 AEVAARNLFILEPYNSANYLLMMNLYEYERMYDEAESLKYAMKARGVDSRPGWSWIQIEQ 710

Query: 564 VLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSE 623
            +H F V  K HP+T EI+ +L  +  ++K AG+VPDT+ +   ++++ EKE  L  H+E
Sbjct: 711 GIHVFEVDGKPHPETAEIYEELIRLVFQIKKAGYVPDTSCIAYNVQEE-EKEKLLLGHTE 769

Query: 624 RLAIAFGLINV-KSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGS 682
           +LAI +GLI    SR+P+R++KN R+CNDCH V K +S + +R+II+RD  RFHHF +G 
Sbjct: 770 KLAITYGLIRSDASRAPVRVMKNTRMCNDCHEVAKHISSLCDRQIILRDAVRFHHFVDGK 829

Query: 683 CSCKDFW 689
           CSC D+W
Sbjct: 830 CSCNDYW 836


>gi|215768832|dbj|BAH01061.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 842

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 248/787 (31%), Positives = 385/787 (48%), Gaps = 127/787 (16%)

Query: 23  LHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRIL 82
           LH +        +   QLH+L+V+T L     ++  L+ L     +  L    S   R+L
Sbjct: 57  LHGDDTDHRVARRLAPQLHSLAVRTGLSRDPRVTCALVDL-----LARLGRGPSCA-RLL 110

Query: 83  QHPS------LVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLG 136
              +       VL+N  +      +   EA+ +F ++  R +  D +T   V+    R G
Sbjct: 111 HEAAEDGAKDAVLWNKHVAMLAEAEEWDEAIAVFREMQARGVPADGYTCARVLHACGRAG 170

Query: 137 AIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAM------------- 183
           A++EG+ +H    KL       V   L  MYA+  ++    RV DAM             
Sbjct: 171 ALREGRAVHAYALKLALDAHPLVPGFLAGMYAENADVAAATRVLDAMGAGSVVPWNAVVA 230

Query: 184 --------DD--------------KDLVSWNCLIDGYVKKGEVEVAMKLFDEM------P 215
                   DD               ++ +WN ++ G  + G    A+ +   M      P
Sbjct: 231 CCARLGLVDDALELAARMSRSGPEPNVATWNTVLSGCSRHGRDREALGVVASMLKQGLRP 290

Query: 216 DR---------------------------------DLFSWTCLVDGFSKCGKVEIAREIF 242
           D                                  D+++ T LVD ++KCG+++ A+++ 
Sbjct: 291 DATTVSSLLKSVANTGLLRHGMEIHCFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVL 350

Query: 243 YRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIR----DLITWNSMIAGYELNGRFM 298
             + +RNL +WN+++ GY  AG  D A EL + M+      D+ TWN +I GY +NG+  
Sbjct: 351 DALEHRNLTTWNSLVAGYANAGRFDIALELVELMKKNRLDPDITTWNGLITGYSMNGQSS 410

Query: 299 EALELLETMLIGDVLPNDATLVSALS---------------------------------- 324
           +A+ LL  +    V PN  +  S +S                                  
Sbjct: 411 QAVLLLRQIKAAGVTPNVVSWTSLISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLL 470

Query: 325 -AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVG 383
            A AGLA+  KG+ +H + ++  +  D V+ T LI MYSK GS+ SA  +F +I +K + 
Sbjct: 471 RACAGLALQKKGKELHCFALRRAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNLV 530

Query: 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMM 443
              AM+ GL +HG   +A++LF+ M   G+KP +ITF  +L AC   GLV +G  YF+ M
Sbjct: 531 LCNAMLTGLAVHGQGREAIELFHDMWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDSM 590

Query: 444 INDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDI 503
              YG++PT E+Y C+VD+L R GYL+EA   IE  P+ P    W +LL+G   HGN  +
Sbjct: 591 ETKYGVKPTTENYACMVDLLARCGYLDEAMDFIERSPIDPGASHWGALLTGCSIHGNLAL 650

Query: 504 GEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRG 563
            E AA NL  + P     Y+++ N+Y     +D+   ++  MK RG    PG S I+   
Sbjct: 651 AEVAARNLFILEPYNSANYLLMMNLYEYERMYDEAESLKYAMKARGVDSRPGWSWIQIEQ 710

Query: 564 VLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSE 623
            +H F V  K HP+T EI+ +L  +  ++K AG+VPDT+ +   ++++ EKE  L  H+E
Sbjct: 711 GIHVFEVDGKPHPETAEIYEELIRLVFQIKKAGYVPDTSCIAYNVQEE-EKEKLLLGHTE 769

Query: 624 RLAIAFGLINV-KSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGS 682
           +LAI +GLI    SR+P+R++KN R+CNDCH V K +S + +R+II+RD  RFHHF +G 
Sbjct: 770 KLAITYGLIRSDASRAPVRVMKNTRMCNDCHEVAKHISSLCDRQIILRDAVRFHHFVDGK 829

Query: 683 CSCKDFW 689
           CSC D+W
Sbjct: 830 CSCNDYW 836


>gi|345505214|gb|AEN99831.1| chlororespiratory reduction 4 [Brassica rapa]
          Length = 612

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 234/595 (39%), Positives = 330/595 (55%), Gaps = 55/595 (9%)

Query: 26  NILKFSSTHKETQQLHALSVKTNLIYHSGISSRLL---------SLYVDPHINNLHYARS 76
           ++L    T  +  +LHA  + T LI +  +++R++         +    P +    +AR 
Sbjct: 20  HLLGTCKTSHDLNKLHARLITTGLIKNPDLTTRIVLAFASASASASSRRPFLAE--FARC 77

Query: 77  IFDRILQHPS-------LVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVI 129
           +F     H S         L+N++IK +       +AL L C +L+  +  D F+    +
Sbjct: 78  VFHE--HHVSSSGEVEDPFLWNVVIKSHSHGVDPRKALFLLCLMLENGVPVDKFSFSLAL 135

Query: 130 KGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLV 189
           K  +RLG +KEG Q+HG + K G   D F+ + L+ +Y K G +   R+VFD M  +D V
Sbjct: 136 KACSRLGFVKEGTQVHGFLIKTGTWSDLFLQNCLIGLYIKCGCLGFARQVFDRMPQRDSV 195

Query: 190 SWNCLIDGYVKKGEVE----------------------------------VAMKLFDEMP 215
           S+N +IDGY+K G VE                                  VA KLFDEMP
Sbjct: 196 SYNSMIDGYLKCGLVESAGELFGLMPREKRNLITWNSMIGGYAQRADGVNVAAKLFDEMP 255

Query: 216 DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDD 275
           ++DL SW  ++ G+ K G++E A+ +F  MP R++V+W  MI+GY K G V  A  LFD 
Sbjct: 256 EKDLISWNSMIGGYVKHGRIEDAKGLFDVMPRRDVVTWAIMIDGYGKLGLVHEAKTLFDQ 315

Query: 276 MEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL-PNDATLVSALSAVAGLAVLNK 334
           M  RD++ +NSM++G   N   MEALE+   M     L P++ +LV  LSA A L  L+K
Sbjct: 316 MPHRDVVVYNSMMSGXVQNRYHMEALEVFNHMEKESHLTPDETSLVIVLSAXAQLGRLSK 375

Query: 335 GRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGM 394
              MH YIV+  F   G LG  LI MYSKCGSI+ A+ VF  I  K + HW AMI GL +
Sbjct: 376 AIDMHLYIVEKQFPSSGKLGVALIDMYSKCGSIQHAMRVFEGIESKSIDHWNAMIGGLAV 435

Query: 395 HGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIE 454
           HG+   A D+  ++ R  +KP  ITF+GVLNACSH+GLV +G   F +M   + IEP ++
Sbjct: 436 HGLGESAFDMLLQIERRSIKPDHITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQ 495

Query: 455 HYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKV 514
           HYGC+VDIL R+G +E AK+ IE MP+ PN VIW + L+   +H   + GE  A +LI  
Sbjct: 496 HYGCMVDILARSGSIELAKNLIEGMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLILQ 555

Query: 515 APDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFV 569
           A      YV+LSN+YA+ G W  V  VR MMK++   K PG S IE  G +HEF+
Sbjct: 556 AGYNPSSYVLLSNMYASNGMWKDVRRVRTMMKEKNIEKIPGCSWIELDGRVHEFL 610


>gi|296088174|emb|CBI35666.3| unnamed protein product [Vitis vinifera]
          Length = 762

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 221/648 (34%), Positives = 362/648 (55%), Gaps = 22/648 (3%)

Query: 55  ISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL 114
           I + LL +Y D    +    + +FD +L   +LV + ++I  Y  N    +A+ LF D+ 
Sbjct: 124 IENCLLRMYCD--CGSCIDVQKVFDEMLM-KNLVSWVIVISAYAKNGELEKAIRLFSDMQ 180

Query: 115 DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEID 174
              + P++     +++       ++ GKQIH  V +     +  V +++ +MY + G ++
Sbjct: 181 ASGIRPNSAVYMSLLQSCLGPSFLELGKQIHSHVIRAQLNANITVETAICNMYVRCGWLE 240

Query: 175 LGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP----DRDLFSWTCLVDGFS 230
             + VFD MD ++ V+W  L+ GY +  ++EVA++LF  M     + D F ++ ++    
Sbjct: 241 GAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCC 300

Query: 231 KCGKVEIAREI---FYRMPNRNLVS-WNAMINGYMKAGDVDSACELFDDMEIRDLITWNS 286
                ++ R+I     ++   + VS    +++ Y+K GD++SA   F  +   + ++W++
Sbjct: 301 GLEDWDMGRQIHSHIVKLGAESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSA 360

Query: 287 MIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNG 346
           +I+G+  +GR  + +++  ++    V+ N     S   A A  A LN G   H   +K G
Sbjct: 361 LISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAIKRG 420

Query: 347 FVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFN 406
            V      + ++ MYSKCG ++ A   F +I +     WTA+I G   HG A +AL  F 
Sbjct: 421 LVSYLYGESAMVTMYSKCGRLDYARRAFESIDEPDAVAWTAIISGYAYHGNAAEALGFFR 480

Query: 407 KMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRT 466
           +M   G++P A+TFI VL ACSH+GLV + ++Y   M  DYG++PTI+HY C++D   R 
Sbjct: 481 RMQSYGVRPNAVTFIAVLTACSHSGLVAEAKQYLGSMSRDYGVKPTIDHYDCMIDTYSRA 540

Query: 467 GYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLS 526
           G L+EA   I  MP  P+ + W SLL G   H +  +G+ AA NL ++ P     Y++L 
Sbjct: 541 GLLQEALELINRMPFEPDAMSWKSLLGGCWAHCDLKLGKIAAENLFRLDPGDTAGYILLF 600

Query: 527 NIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLS 586
           N+Y+A G+W++   VR++M +R  +K+   S I  +G +H FVVGD+ HPQT+ I+SKL 
Sbjct: 601 NLYSAFGKWEEAGHVRKLMAERELKKEVSCSWISVKGQVHRFVVGDRHHPQTEAIYSKLE 660

Query: 587 EMRNKLKAAGHVPDTTQVLLCIEDQ-----KEKEAELENHSERLAIAFGLINVKSRSPIR 641
           E +        V D+   LL  ED        ++ +L +HSE+LAIAFGLI+ +  +PI 
Sbjct: 661 EFKCS------VIDSPVRLLNEEDDVSCSLSARKEQLLDHSEKLAIAFGLISTEDNAPIL 714

Query: 642 IVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           + KNLR C DCH   K +S +  R+I+VRD++RFHHFK+G CSC D+W
Sbjct: 715 VFKNLRACRDCHEFGKQVSMVTGRQIVVRDSTRFHHFKSGKCSCNDYW 762



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 87/202 (43%), Gaps = 4/202 (1%)

Query: 294 NGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVL 353
            G+  EA + L+ M   DV     +      A   L  L  GR +H  + +      G +
Sbjct: 65  QGKLKEAHDFLKEMDDADVSVTPHSYQCLFEACGKLRSLADGRLIHDRLRRTVKNPSGSI 124

Query: 354 GTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGM 413
              L++MY  CGS      VF  +  K +  W  +I     +G   +A+ LF+ M   G+
Sbjct: 125 ENCLLRMYCDCGSCIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASGI 184

Query: 414 KPTAITFIGVLNACSHAGLVNDGRRYFNMMIN-DYGIEPTIEHYGCLVDILCRTGYLEEA 472
           +P +  ++ +L +C     +  G++  + +I        T+E   C  ++  R G+LE A
Sbjct: 185 RPNSAVYMSLLQSCLGPSFLELGKQIHSHVIRAQLNANITVETAIC--NMYVRCGWLEGA 242

Query: 473 KSTIESMPMRPNFVIWMSLLSG 494
           K   + M  + N V W  L+ G
Sbjct: 243 KLVFDGMDAQ-NAVTWTGLMVG 263


>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
 gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/593 (35%), Positives = 337/593 (56%), Gaps = 46/593 (7%)

Query: 142 KQIHGLVFKLGFGFDKFVLSSLVSMYAKFG-EID-LGRRVFDAMDDKDLVSWNCLIDGYV 199
           KQIHG V + G     ++L+ L+    K G  +D   RRV + +  ++   W  +I GY 
Sbjct: 66  KQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPVQFRNPFLWTAVIRGYA 125

Query: 200 KKGEVEVAMKLFDEMPDRDL----FSWTCL------------------------------ 225
            +G+ + A+ ++  M   ++    F+++ L                              
Sbjct: 126 IEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQTFRLRGFCFVY 185

Query: 226 -----VDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRD 280
                +D + KC  ++ AR++F  MP R+++SW  +I  Y + G+++ A ELF+ +  +D
Sbjct: 186 VGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAELFESLPTKD 245

Query: 281 LITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHS 340
           ++ W +M+ G+  N +  EALE  + M    +  ++ T+   +SA A L           
Sbjct: 246 MVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQ 305

Query: 341 YIVKNGFVVDG--VLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMA 398
              K+G+      V+G+ LI MYSKCG++E A+ VF +++ K V  +++MI+GL  HG A
Sbjct: 306 IAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLATHGRA 365

Query: 399 TQALDLFNKM-CRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYG 457
            +AL LF+ M  +  +KP  +TF+G L ACSH+GLV+ GR+ F+ M   +G++PT +HY 
Sbjct: 366 QEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDHYT 425

Query: 458 CLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPD 517
           C+VD+L RTG L+EA   I++M + P+  +W +LL   R H N +I E AA +L ++ PD
Sbjct: 426 CMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAEIAAEHLFELEPD 485

Query: 518 TIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSS-SIEHRGVLHEFVVGDKSHP 576
            IG Y++LSN+YA+AG W  V  VR+++K++G +K P  S  ++  G +H+F  G+ +HP
Sbjct: 486 IIGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFPGNLNHP 545

Query: 577 QTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKS 636
            +++I  KL E+  +L   G+ PD + V   + D   K   L  H+E+LA+AF L+    
Sbjct: 546 MSNKIQDKLEELVERLTVLGYQPDLSSVPYDVSDNA-KRLILIQHTEKLALAFSLLTTNR 604

Query: 637 RSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            S I I+KNLR+C DCH   +L S +  + II+RDN RFHHF++G CSC DFW
Sbjct: 605 DSTITIMKNLRMCLDCHKFMRLASEVTGKVIIMRDNMRFHHFRSGDCSCGDFW 657



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 104/406 (25%), Positives = 194/406 (47%), Gaps = 49/406 (12%)

Query: 36  ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIK 95
           + +Q+H   ++  L     I ++L+       +    YAR + + + Q  +  L+  +I+
Sbjct: 64  QIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPV-QFRNPFLWTAVIR 122

Query: 96  CYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKL-GFG 154
            Y    +  EA+ ++  +    + P +FT   ++K    +  +  G+Q H   F+L GF 
Sbjct: 123 GYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQTFRLRGFC 182

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
           F  +V ++++ MY K   ID  R+VFD M ++D++SW  LI  Y + G +E A +LF+ +
Sbjct: 183 F-VYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAELFESL 241

Query: 215 PDRDLFSWTCLVDGFSKCGKVEIAREIFYRM----------------------------- 245
           P +D+ +WT +V GF++  K + A E F RM                             
Sbjct: 242 PTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYAD 301

Query: 246 ------------PNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYEL 293
                       P+ ++V  +A+I+ Y K G+V+ A  +F  M  +++ T++SMI G   
Sbjct: 302 RAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLAT 361

Query: 294 NGRFMEALELLETMLI-GDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV 352
           +GR  EAL L   M+   ++ PN  T V AL A +   ++++GR +   + +  F V   
Sbjct: 362 HGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQT-FGVQPT 420

Query: 353 LG--TLLIQMYSKCGSIESALTVFRAIS-KKKVGHWTAMIVGLGMH 395
               T ++ +  + G ++ AL + + +S +   G W A++    +H
Sbjct: 421 RDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIH 466



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/225 (21%), Positives = 96/225 (42%), Gaps = 9/225 (4%)

Query: 332 LNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSI--ESALTVFRAISKKKVGHWTAMI 389
           LN+ + +H ++++ G      + T LI+  +K G      A  V   +  +    WTA+I
Sbjct: 62  LNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPVQFRNPFLWTAVI 121

Query: 390 VGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGI 449
            G  + G   +A+ ++  M +  + P + TF  +L AC     +N GR++        G 
Sbjct: 122 RGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQTFRLRGF 181

Query: 450 EPTIEHYG-CLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAA 508
                + G  ++D+  +   ++ A+   + MP R + + W  L++     GN    E AA
Sbjct: 182 --CFVYVGNTMIDMYVKCESIDCARKVFDEMPER-DVISWTELIAAYARVGNM---ECAA 235

Query: 509 NNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKD 553
                +    +  +  +   +A   +  +  E  + M+K G R D
Sbjct: 236 ELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRAD 280


>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03880, mitochondrial; Flags: Precursor
 gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 231/621 (37%), Positives = 335/621 (53%), Gaps = 43/621 (6%)

Query: 107 LTLFCDL--LDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLV 164
           +TL C     D+ LL   FT  C  +   R     +  Q HGL +     + + +   + 
Sbjct: 15  VTLRCSYSSTDQTLLLSEFTRLCYQRDLPRAMKAMDSLQSHGL-WADSATYSELIKCCIS 73

Query: 165 SMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTC 224
           +     G + + R ++       +   N LI+ YVK   +  A +LFD+MP R++ SWT 
Sbjct: 74  NRAVHEGNL-ICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTT 132

Query: 225 LVDGFSKCGKVEIAREIFYRM------PN------------------------------R 248
           ++  +SKC   + A E+   M      PN                               
Sbjct: 133 MISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVRMLHCGIIKEGLES 192

Query: 249 NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETML 308
           ++   +A+I+ + K G+ + A  +FD+M   D I WNS+I G+  N R   ALEL + M 
Sbjct: 193 DVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMK 252

Query: 309 IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIE 368
               +   ATL S L A  GLA+L  G   H +IVK  +  D +L   L+ MY KCGS+E
Sbjct: 253 RAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLE 310

Query: 369 SALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACS 428
            AL VF  + ++ V  W+ MI GL  +G + +AL LF +M   G KP  IT +GVL ACS
Sbjct: 311 DALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACS 370

Query: 429 HAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIW 488
           HAGL+ DG  YF  M   YGI+P  EHYGC++D+L + G L++A   +  M   P+ V W
Sbjct: 371 HAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTW 430

Query: 489 MSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548
            +LL   R   N  + EYAA  +I + P+  G Y +LSNIYA + +WD V E+R  M+ R
Sbjct: 431 RTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDR 490

Query: 549 GFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCI 608
           G +K+PG S IE    +H F++GD SHPQ  E+  KL+++ ++L   G+VP+T  VL  +
Sbjct: 491 GIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDL 550

Query: 609 EDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREII 668
           E + + E  L +HSE+LA+AFGL+ +     IRI KNLR+C DCH   KL S +  R I+
Sbjct: 551 EGE-QMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIV 609

Query: 669 VRDNSRFHHFKNGSCSCKDFW 689
           +RD  R+HHF++G CSC D+W
Sbjct: 610 IRDPIRYHHFQDGKCSCGDYW 630


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 225/663 (33%), Positives = 365/663 (55%), Gaps = 13/663 (1%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           ++ + +H L  K        + + L++ Y     N    A  +FD  + H  ++ +N +I
Sbjct: 213 EDGEVVHGLLEKLGFGSQCAVGNALMAFYAKS--NRTKDAILVFDG-MPHRDVISWNSMI 269

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
                N    +A+ LF  +       D+ TL  V+   A L  +  G+ +HG   K GF 
Sbjct: 270 SGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLGRVVHGYSVKTGFI 329

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
               + + L+ MY+   +     ++F  M  K++VSW  +I  Y + G  +    LF EM
Sbjct: 330 SQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEM 389

Query: 215 ----PDRDLFSWTCLVDGFSKCGKVEIAREIF-YRMPN---RNLVSWNAMINGYMKAGDV 266
                  D+F+ T  +  F+    ++  + +  Y + N   + L   NA++  Y+K G++
Sbjct: 390 GLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRNGMEKVLAVTNALMEMYVKCGNM 449

Query: 267 DSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326
           + A  +FD +  +D+I+WN++I GY  N    EA  L   ML+  + PN  T+   L A 
Sbjct: 450 EEAKLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEMLL-QLRPNAVTMTCILPAA 508

Query: 327 AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWT 386
           A L+ L +GR MH+Y ++ G++ D  +   LI MY KCG++  A  +F  +S K +  WT
Sbjct: 509 ASLSSLERGREMHAYALRRGYLEDDFVANALIDMYVKCGALLLARRLFDRLSNKNLISWT 568

Query: 387 AMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIND 446
            M+ G GMHG    A+ LF +M   G+ P A +F  +L ACSH+GL ++G R+F+ M  +
Sbjct: 569 IMVAGYGMHGRGRDAIALFEQMRVSGIAPDAASFSAILYACSHSGLRDEGWRFFDAMRKE 628

Query: 447 YGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEY 506
           + IEP ++HY C+VD+L  TG L+EA   I+SMP+ P+  IW+SLL G R H N  + E 
Sbjct: 629 HKIEPRLKHYTCMVDLLINTGNLKEAYEFIDSMPIEPDSSIWVSLLRGCRIHRNVKLAEE 688

Query: 507 AANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLH 566
            A  + ++ P+  G YV+L+NIYA A +W+ V +++  +  RG R++ G S IE +G +H
Sbjct: 689 VAERVFELEPENTGYYVLLANIYAEAERWEAVRKLKNKIGGRGLRENTGCSWIEAKGKVH 748

Query: 567 EFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLA 626
            F+  +++HPQ   I   L+E+  +++  GH P     L+  ++    EA L  HS +LA
Sbjct: 749 VFIADNRNHPQGTRIAEFLNEVAKRMQEEGHDPKKKYALMGADNAVHGEA-LCGHSSKLA 807

Query: 627 IAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCK 686
           +AFG++N+     IR+ KN RVC+ CH   K +S + +REII+RD++RFHHF+ G CSC+
Sbjct: 808 VAFGVLNLSEGRLIRVTKNSRVCSHCHEAAKFISKMCSREIILRDSNRFHHFEQGRCSCR 867

Query: 687 DFW 689
            +W
Sbjct: 868 GYW 870



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 127/482 (26%), Positives = 230/482 (47%), Gaps = 17/482 (3%)

Query: 55  ISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL 114
           +  +L+ +Y+     +L  AR +FD + Q   + ++  L+  Y       E + LF  + 
Sbjct: 131 LGQKLVLMYLK--CGDLENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMH 188

Query: 115 DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEID 174
              + PD +T+ CV+K  A LG+I++G+ +HGL+ KLGFG    V ++L++ YAK     
Sbjct: 189 CCGVRPDAYTISCVLKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTK 248

Query: 175 LGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM--PDRDLFSWTCLVDGFSKC 232
               VFD M  +D++SWN +I G    G  + A++LF  M     +L S T L+     C
Sbjct: 249 DAILVFDGMPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSAT-LLSVLPAC 307

Query: 233 GKVE---IAREIFYRMPNRNLVSW----NAMINGYMKAGDVDSACELFDDMEIRDLITWN 285
            ++    + R +         +S     N +++ Y    D  S  ++F +M  +++++W 
Sbjct: 308 AELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWT 367

Query: 286 SMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKN 345
           +MI  Y   G + +   L + M +    P+   + SAL A AG  +L  G+ +H Y ++N
Sbjct: 368 AMITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRN 427

Query: 346 GFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLF 405
           G      +   L++MY KCG++E A  +F  +  K +  W  +I G   + +A +A  LF
Sbjct: 428 GMEKVLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLF 487

Query: 406 NKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCR 465
            +M  + ++P A+T   +L A +    +  GR      +    +E        L+D+  +
Sbjct: 488 TEML-LQLRPNAVTMTCILPAAASLSSLERGREMHAYALRRGYLEDDFV-ANALIDMYVK 545

Query: 466 TGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG-NKD-IGEYAANNLIKVAPDTIGCYV 523
            G L  A+   + +  + N + W  +++G   HG  +D I  +    +  +APD      
Sbjct: 546 CGALLLARRLFDRLSNK-NLISWTIMVAGYGMHGRGRDAIALFEQMRVSGIAPDAASFSA 604

Query: 524 VL 525
           +L
Sbjct: 605 IL 606



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 128/449 (28%), Positives = 214/449 (47%), Gaps = 22/449 (4%)

Query: 121 DNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG---FDKFVLSSLVSMYAKFGEIDLGR 177
           D+ +   V++  + + +++ GK+ H LV     G    D  +   LV MY K G+++  R
Sbjct: 90  DDRSYGAVLQLCSEVRSLEGGKRAHFLVRASSLGRDGMDNVLGQKLVLMYLKCGDLENAR 149

Query: 178 RVFDAMDD-KDLVSWNCLIDGYVKKGEVEVAMKLFDEM----PDRDLFSWTCLVDGFSKC 232
           RVFD M    D+  W  L+ GY K G++   + LF +M       D ++ +C++   +  
Sbjct: 150 RVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYTISCVLKCIAGL 209

Query: 233 GKVEIAREIFYRMPNRNLVSW----NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMI 288
           G +E    +   +      S     NA++  Y K+     A  +FD M  RD+I+WNSMI
Sbjct: 210 GSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVISWNSMI 269

Query: 289 AGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFV 348
           +G   NG + +A+EL   M +     + ATL+S L A A L +L  GR +H Y VK GF+
Sbjct: 270 SGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLGRVVHGYSVKTGFI 329

Query: 349 VDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKM 408
               L  +L+ MYS C    S   +FR + +K V  WTAMI      G+  +   LF +M
Sbjct: 330 SQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEM 389

Query: 409 CRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGY 468
              G +P        L+A +   L+  G+      I + G+E  +     L+++  + G 
Sbjct: 390 GLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRN-GMEKVLAVTNALMEMYVKCGN 448

Query: 469 LEEAKSTIESMPMRPNFVIWMSLLSG-ARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSN 527
           +EEAK   + + +  + + W +L+ G +RN+   +        L+++ P+     V ++ 
Sbjct: 449 MEEAKLIFDGV-VSKDMISWNTLIGGYSRNNLANEAFSLFTEMLLQLRPNA----VTMTC 503

Query: 528 IYAAAGQWDKVSEVREMMK---KRGFRKD 553
           I  AA     +   REM     +RG+ +D
Sbjct: 504 ILPAAASLSSLERGREMHAYALRRGYLED 532



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 95/213 (44%), Gaps = 11/213 (5%)

Query: 294 NGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDG-- 351
           +G   EAL LL     G    +D +  + L   + +  L  G+  H  +  +    DG  
Sbjct: 74  SGDLEEALGLL-----GSDGVDDRSYGAVLQLCSEVRSLEGGKRAHFLVRASSLGRDGMD 128

Query: 352 -VLGTLLIQMYSKCGSIESALTVFRAISK-KKVGHWTAMIVGLGMHGMATQALDLFNKMC 409
            VLG  L+ MY KCG +E+A  VF  + +   V  WTA++ G    G   + + LF KM 
Sbjct: 129 NVLGQKLVLMYLKCGDLENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMH 188

Query: 410 RMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYL 469
             G++P A T   VL   +  G + DG    + ++   G          L+    ++   
Sbjct: 189 CCGVRPDAYTISCVLKCIAGLGSIEDG-EVVHGLLEKLGFGSQCAVGNALMAFYAKSNRT 247

Query: 470 EEAKSTIESMPMRPNFVIWMSLLSGARNHGNKD 502
           ++A    + MP R + + W S++SG  ++G  D
Sbjct: 248 KDAILVFDGMPHR-DVISWNSMISGCTSNGLYD 279


>gi|297742136|emb|CBI33923.3| unnamed protein product [Vitis vinifera]
          Length = 461

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 198/452 (43%), Positives = 297/452 (65%), Gaps = 4/452 (0%)

Query: 113 LLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGE 172
           ++ + + P+++T P ++K    +G+I +G++IH  + K GF  D FV +SL+ MY+  G 
Sbjct: 1   MVRKCVAPNHYTFPLLVKVCWEIGSIGDGEKIHARILKFGFELDLFVRNSLIHMYSVCGR 60

Query: 173 IDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKC 232
           I   R +F+     DLV+WN +IDGYVK GE+  A +LF+EMP+RDLFSW  ++ G+   
Sbjct: 61  IGDARAMFEVCSISDLVTWNSMIDGYVKNGEIGAARELFEEMPERDLFSWNSMIAGYVGN 120

Query: 233 GKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYE 292
           G +  A ++F +MP R++VSWN MI+GY +  +++ ACELF+ M  R++++WN M+A Y 
Sbjct: 121 GDMTAAEDLFNKMPFRDIVSWNCMIDGYAQVQNMEIACELFNWMPYRNVVSWNIMLALYV 180

Query: 293 LNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVV--D 350
               + E L + + M+ G+ +PN+ATLVS L+A A L  L++G+W+HSYI KN  V+  D
Sbjct: 181 RIKDYDECLRMFDKMM-GETMPNEATLVSVLTACAHLGRLDRGKWIHSYI-KNNRVIEPD 238

Query: 351 GVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCR 410
            +L T L+ MY+KCG+++ A  VF  +S + V  W +MI+G GMHG A +AL++F  M +
Sbjct: 239 VLLSTALLTMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGYGMHGQADKALEMFLDMEK 298

Query: 411 MGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLE 470
            G  P   TFI VL+AC+H+G++ +G  YF++M   Y IEP +EHYGC+VD+L R G ++
Sbjct: 299 RGPMPNDATFICVLSACAHSGMILEGWWYFDLMRRAYKIEPKVEHYGCMVDLLGRAGLMK 358

Query: 471 EAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYA 530
           + +  I  MPM     +W +LLS  R H N ++ E  A  LI++ P  IG Y++LSNIYA
Sbjct: 359 DLEELIRKMPMEGGTALWGALLSACRTHSNSELAEIVAKRLIELEPRDIGPYLLLSNIYA 418

Query: 531 AAGQWDKVSEVREMMKKRGFRKDPGSSSIEHR 562
           A G+WD V  VR+MMK+RG  K  G SS   R
Sbjct: 419 AEGKWDDVEIVRKMMKERGLTKTTGLSSSLRR 450



 Score = 46.6 bits (109), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 3/87 (3%)

Query: 55  ISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL 114
           +S+ LL++Y      +L  AR +FD+ + + S+V +N +I  Y  + ++ +AL +F D+ 
Sbjct: 241 LSTALLTMYAKCGAMDL--ARDVFDK-MSNRSVVSWNSMIMGYGMHGQADKALEMFLDME 297

Query: 115 DRFLLPDNFTLPCVIKGAARLGAIKEG 141
            R  +P++ T  CV+   A  G I EG
Sbjct: 298 KRGPMPNDATFICVLSACAHSGMILEG 324


>gi|225424875|ref|XP_002269101.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Vitis vinifera]
          Length = 607

 Score =  404 bits (1038), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 221/570 (38%), Positives = 329/570 (57%), Gaps = 19/570 (3%)

Query: 138 IKEGKQIHGLVFKLGFGF--DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLI 195
           I + KQ+H    +       + F L S +  ++   ++    RVF  +++ +   WN LI
Sbjct: 39  ISQLKQLHAQTIRTTSSHHPNTFFLYSRILHFSSLHDLRYAFRVFHQIENPNSFMWNALI 98

Query: 196 DGYV-----KKGEVEVAMKLFDE---MPDRDLFSWTCLVDG--FSKCGKVEIAREIFYRM 245
                    K+  + +  ++ ++   M D+  F +        F+     +I  +I    
Sbjct: 99  RACARSTDRKQHAIALYHRMLEQGSVMQDKHTFPFVLKACAYLFALSEGEQIHAQILKLG 158

Query: 246 PNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLE 305
            + ++   N++++ Y     +D A  +FD M  R L++WN +I  +   G F  AL L  
Sbjct: 159 FDSDVYINNSLVHFYATCDRLDFAKGVFDRMSERSLVSWNVVIDAFVRFGEFDAALNLFG 218

Query: 306 TMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKN---GFVVDGVLGTLLIQMYS 362
            M      P+  T+ S  +A AG+  L+ G W H +++K      V D +L T L+ MY 
Sbjct: 219 EMQ-KFFEPDGYTIQSIANACAGMGSLSLGMWAHVFLLKKFDADRVNDVLLNTSLVDMYC 277

Query: 363 KCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRM-GMKPTAITFI 421
           KCGS+E AL +F  + K+ V  W +MI+G   HG    AL+ F  M R   + P AITF+
Sbjct: 278 KCGSLELALQLFHRMPKRDVTSWNSMILGFSTHGEVAAALEYFGCMVRTEKLMPNAITFV 337

Query: 422 GVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPM 481
           GVL+AC+H GLV++GRRYF++M+ +Y I+P +EHYGCLVD+L R G ++EA   + +MPM
Sbjct: 338 GVLSACNHGGLVSEGRRYFDVMVTEYKIKPELEHYGCLVDLLARAGLIDEALDVVSNMPM 397

Query: 482 RPNFVIWMSLLSGA-RNHGNKDIGEYAANNLIKVAPDTI-GCYVVLSNIYAAAGQWDKVS 539
           RP+ VIW SLL    + +   ++ E  A  +++       G YV+LS +YA+A +W+ V 
Sbjct: 398 RPDLVIWRSLLDACCKQNAGVELSEEMARRVLEAEGGVCSGVYVLLSRVYASASRWNDVG 457

Query: 540 EVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVP 599
            VR++M  +G  K+PG SSIE  GV HEF  GD SHPQT+EI+S L  +  +++  G+ P
Sbjct: 458 MVRKLMTDKGVVKEPGCSSIEIDGVAHEFFAGDTSHPQTEEIYSALDVIEERVERVGYSP 517

Query: 600 DTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLL 659
           D++Q  +  E    K+  L  HSERLAIAFGL+  K   PIRI KNLRVCN+CH VTKL+
Sbjct: 518 DSSQAPMVDETIDGKQYSLRLHSERLAIAFGLLKTKPGMPIRIFKNLRVCNNCHQVTKLI 577

Query: 660 SGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           S ++NREIIVRD  RFHHFK+G+CSC D+W
Sbjct: 578 SRVFNREIIVRDRIRFHHFKDGACSCMDYW 607



 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 118/438 (26%), Positives = 196/438 (44%), Gaps = 113/438 (25%)

Query: 36  ETQQLHALSVKTNLIYHSG---ISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNL 92
           + +QLHA +++T   +H     + SR+L       +++L YA  +F +I ++P+  ++N 
Sbjct: 41  QLKQLHAQTIRTTSSHHPNTFFLYSRILHF---SSLHDLRYAFRVFHQI-ENPNSFMWNA 96

Query: 93  LIK-CYVFNQRSHEALTLFCDLLDR-FLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFK 150
           LI+ C     R   A+ L+  +L++  ++ D  T P V+K  A L A+ EG+QIH  + K
Sbjct: 97  LIRACARSTDRKQHAIALYHRMLEQGSVMQDKHTFPFVLKACAYLFALSEGEQIHAQILK 156

Query: 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
           LGF  D ++ +SLV  YA    +D  + VFD M ++ LVSWN +ID +V+ GE + A+ L
Sbjct: 157 LGFDSDVYINNSLVHFYATCDRLDFAKGVFDRMSERSLVSWNVVIDAFVRFGEFDAALNL 216

Query: 211 FDEM-----PD------------------------------------RDLFSWTCLVDGF 229
           F EM     PD                                     D+   T LVD +
Sbjct: 217 FGEMQKFFEPDGYTIQSIANACAGMGSLSLGMWAHVFLLKKFDADRVNDVLLNTSLVDMY 276

Query: 230 SKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIA 289
            KCG +E+A ++F+RMP R++ SWN+MI G+   G+V +A E F  M             
Sbjct: 277 CKCGSLELALQLFHRMPKRDVTSWNSMILGFSTHGEVAAALEYFGCM------------- 323

Query: 290 GYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVV 349
                            +    ++PN  T V  LSA     ++++GR     +V    + 
Sbjct: 324 -----------------VRTEKLMPNAITFVGVLSACNHGGLVSEGRRYFDVMVTEYKI- 365

Query: 350 DGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMC 409
                                        K ++ H+  ++  L   G+  +ALD+ +   
Sbjct: 366 -----------------------------KPELEHYGCLVDLLARAGLIDEALDVVSN-- 394

Query: 410 RMGMKPTAITFIGVLNAC 427
            M M+P  + +  +L+AC
Sbjct: 395 -MPMRPDLVIWRSLLDAC 411


>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 244/686 (35%), Positives = 369/686 (53%), Gaps = 32/686 (4%)

Query: 24  HWNIL--KFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRI 81
           H+ +L  K  S H      H         Y++     L++ Y    +  +H AR +FD I
Sbjct: 49  HFTLLYSKCGSLHNAQTSFHLTQYPNVFSYNT-----LINAYAKHSL--IHIARRVFDEI 101

Query: 82  LQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAAR-LGAIKE 140
            Q P +V YN LI  Y         L LF ++ +  L  D FTL  VI      +G ++ 
Sbjct: 102 PQ-PDIVSYNTLIAAYADRGECGPTLRLFEEVRELRLGLDGFTLSGVITACGDDVGLVR- 159

Query: 141 GKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD---KDLVSWNCLIDG 197
             Q+H  V   G      V +++++ Y++ G +   RRVF  M +   +D VSWN +I  
Sbjct: 160 --QLHCFVVVCGHDCYASVNNAVLACYSRKGFLSEARRVFREMGEGGGRDEVSWNAMIVA 217

Query: 198 YVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSW 253
             +  E   A+ LF EM  R    D+F+   ++  F+ C K  +    F+ M  ++    
Sbjct: 218 CGQHREGMEAVGLFREMVRRGLKVDMFTMASVLTAFT-CVKDLVGGRQFHGMMIKSGFHG 276

Query: 254 NA-----MINGYMK-AGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFME-ALELLET 306
           N+     +I+ Y K AG +    ++F+++   DL+ WN+MI+G+ L     E  L     
Sbjct: 277 NSHVGSGLIDLYSKCAGSMVECRKVFEEITAPDLVLWNTMISGFSLYEDLSEDGLWCFRE 336

Query: 307 MLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV-LGTLLIQMYSKCG 365
           M      P+D + V   SA + L+  + G+ +H+  +K+    + V +   L+ MYSKCG
Sbjct: 337 MQRNGFRPDDCSFVCVTSACSNLSSPSLGKQVHALAIKSDVPYNRVSVNNALVAMYSKCG 396

Query: 366 SIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN 425
           ++  A  VF  + +       +MI G   HG+  ++L LF  M    + P +ITFI VL+
Sbjct: 397 NVHDARRVFDTMPEHNTVSLNSMIAGYAQHGVEVESLRLFELMLEKDIAPNSITFIAVLS 456

Query: 426 ACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNF 485
           AC H G V +G++YFNMM   + IEP  EHY C++D+L R G L+EA+  IE+MP  P  
Sbjct: 457 ACVHTGKVEEGQKYFNMMKERFCIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGS 516

Query: 486 VIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMM 545
           + W +LL   R HGN ++   AAN  +++ P     YV+LSN+YA+A +W++ + V+ +M
Sbjct: 517 IEWATLLGACRKHGNVELAVKAANEFLRLEPYNAAPYVMLSNMYASAARWEEAATVKRLM 576

Query: 546 KKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVL 605
           ++RG +K PG S IE    +H FV  D SHP   EIH  + +M  K+K AG+VPD    L
Sbjct: 577 RERGVKKKPGCSWIEIDKKVHVFVAEDTSHPMIKEIHVYMGKMLKKMKQAGYVPDIRWAL 636

Query: 606 LCIEDQK--EKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIY 663
           +  E+ +  E+E  L  HSE+LA+AFGLI+ +   PI +VKNLR+C DCH+  KL+S + 
Sbjct: 637 VKDEEVEPDERERRLLYHSEKLAVAFGLISTEEGVPILVVKNLRICGDCHNAVKLISALT 696

Query: 664 NREIIVRDNSRFHHFKNGSCSCKDFW 689
            REI VRD  RFH FK G CSC+D+W
Sbjct: 697 GREITVRDTHRFHCFKEGHCSCRDYW 722



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 112/453 (24%), Positives = 200/453 (44%), Gaps = 48/453 (10%)

Query: 141 GKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVK 200
           GK +H L FK       ++ +    +Y+K G +   +  F      ++ S+N LI+ Y K
Sbjct: 28  GKILHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFHLTQYPNVFSYNTLINAYAK 87

Query: 201 KGEVEVAMKLFDEMPDRDLFSWTCLVDGFS---KCGKV----EIAREIFYRMPNRNLVSW 253
              + +A ++FDE+P  D+ S+  L+  ++   +CG      E  RE+   +    L   
Sbjct: 88  HSLIHIARRVFDEIPQPDIVSYNTLIAAYADRGECGPTLRLFEEVRELRLGLDGFTLSGV 147

Query: 254 ------------------------------NAMINGYMKAGDVDSACELFDDMEI---RD 280
                                         NA++  Y + G +  A  +F +M     RD
Sbjct: 148 ITACGDDVGLVRQLHCFVVVCGHDCYASVNNAVLACYSRKGFLSEARRVFREMGEGGGRD 207

Query: 281 LITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHS 340
            ++WN+MI     +   MEA+ L   M+   +  +  T+ S L+A   +  L  GR  H 
Sbjct: 208 EVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGRQFHG 267

Query: 341 YIVKNGFVVDGVLGTLLIQMYSKC-GSIESALTVFRAISKKKVGHWTAMIVGLGMH-GMA 398
            ++K+GF  +  +G+ LI +YSKC GS+     VF  I+   +  W  MI G  ++  ++
Sbjct: 268 MMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEITAPDLVLWNTMISGFSLYEDLS 327

Query: 399 TQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGC 458
              L  F +M R G +P   +F+ V +ACS+    + G++   + I        +     
Sbjct: 328 EDGLWCFREMQRNGFRPDDCSFVCVTSACSNLSSPSLGKQVHALAIKSDVPYNRVSVNNA 387

Query: 459 LVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLI---KVA 515
           LV +  + G + +A+   ++MP   N V   S+++G   HG  ++       L+    +A
Sbjct: 388 LVAMYSKCGNVHDARRVFDTMP-EHNTVSLNSMIAGYAQHG-VEVESLRLFELMLEKDIA 445

Query: 516 PDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548
           P++I    VLS      G+ ++  +   MMK+R
Sbjct: 446 PNSITFIAVLSAC-VHTGKVEEGQKYFNMMKER 477


>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 242/680 (35%), Positives = 371/680 (54%), Gaps = 27/680 (3%)

Query: 30  FSSTHKETQQLHALSVKTNLIYHSGISS--RLLSLYVDPHINNLHYARSIFDRILQHPSL 87
           F+  + +   LH      +L  +  + S   L++ Y    +  +H AR +FD I Q P +
Sbjct: 50  FTLLYSKCGSLHNAQTSFDLTQYPNVFSYNTLINAYAKHSL--IHLARQVFDEIPQ-PDI 106

Query: 88  VLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAAR-LGAIKEGKQIHG 146
           V YN LI  Y        AL LF ++ +     D FTL  VI      +G ++   Q+H 
Sbjct: 107 VSYNTLIAAYADRGECRPALRLFAEVRELRFGLDGFTLSGVIIACGDDVGLVR---QLHC 163

Query: 147 LVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD---KDLVSWNCLIDGYVKKGE 203
            V   G+     V +++++ Y++ G ++  RRVF  M +   +D VSWN +I    +  E
Sbjct: 164 FVVVCGYDCYASVNNAVLACYSRKGFLNEARRVFREMGEGGGRDEVSWNAMIVACGQHRE 223

Query: 204 VEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNA---- 255
              A++LF EM  R    D+F+   ++  F+ C K  +    F+ M  ++    N+    
Sbjct: 224 GLEAVELFREMVRRGLKVDMFTMASVLTAFT-CVKDLVGGMQFHGMMIKSGFHGNSHVGS 282

Query: 256 -MINGYMK-AGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFME-ALELLETMLIGDV 312
            +I+ Y K AG +    ++F+++   DL+ WN+MI+G+       E  +     M     
Sbjct: 283 GLIDLYSKCAGGMVECRKVFEEIAAPDLVLWNTMISGFSQYEDLSEDGIWCFREMQHNGF 342

Query: 313 LPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV-LGTLLIQMYSKCGSIESAL 371
            P+D + V   SA + L+  + G+ +H+  +K+    + V +   L+ MYSKCG++  A 
Sbjct: 343 HPDDCSFVCVTSACSNLSSPSVGKQVHALAIKSDIPYNRVSVNNALVAMYSKCGNVHDAR 402

Query: 372 TVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAG 431
            VF  + +  +    +MI G   HG+  ++L LF  M +  + P  ITFI VL+AC H G
Sbjct: 403 RVFDTMPEHNMVSLNSMIAGYAQHGVEVESLRLFELMLQKDIAPNTITFIAVLSACVHTG 462

Query: 432 LVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSL 491
            V +G++YFNMM   + IEP  EHY C++D+L R G L+EA+  IE+MP  P  + W +L
Sbjct: 463 KVEEGQKYFNMMKERFRIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATL 522

Query: 492 LSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFR 551
           L   R HGN ++   AAN  +++ P     YV+LSN+YA+A +W++ + V+ +M++RG +
Sbjct: 523 LGACRKHGNVELAVKAANEFLQLEPYNAAPYVMLSNMYASAARWEEAATVKRLMRERGVK 582

Query: 552 KDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQ 611
           K PG S IE    +H FV  D SHP   EIH  + E+  K+K AG+VPD    L+  E+ 
Sbjct: 583 KKPGCSWIEIDKKVHVFVAEDTSHPMIKEIHVYMGEILRKMKQAGYVPDIRWALVKDEEV 642

Query: 612 K--EKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIV 669
           +  EKE  L  HSE+LA+AFGLI+ +   PI +VKNLR+C DCH+  KL+S I  REI V
Sbjct: 643 EPDEKERRLLYHSEKLAVAFGLISTEEWVPILVVKNLRICGDCHNAIKLISAITGREITV 702

Query: 670 RDNSRFHHFKNGSCSCKDFW 689
           RD  RFH FK G CSC D+W
Sbjct: 703 RDTHRFHCFKEGHCSCGDYW 722



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 111/458 (24%), Positives = 202/458 (44%), Gaps = 47/458 (10%)

Query: 141 GKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVK 200
           GK +H L FK       ++ +    +Y+K G +   +  FD     ++ S+N LI+ Y K
Sbjct: 28  GKTLHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFDLTQYPNVFSYNTLINAYAK 87

Query: 201 KGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPN------------- 247
              + +A ++FDE+P  D+ S+  L+  ++  G+   A  +F  +               
Sbjct: 88  HSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFAEVRELRFGLDGFTLSGV 147

Query: 248 -----------RNLVSW-------------NAMINGYMKAGDVDSACELFDDMEI---RD 280
                      R L  +             NA++  Y + G ++ A  +F +M     RD
Sbjct: 148 IIACGDDVGLVRQLHCFVVVCGYDCYASVNNAVLACYSRKGFLNEARRVFREMGEGGGRD 207

Query: 281 LITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHS 340
            ++WN+MI     +   +EA+EL   M+   +  +  T+ S L+A   +  L  G   H 
Sbjct: 208 EVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGMQFHG 267

Query: 341 YIVKNGFVVDGVLGTLLIQMYSKC-GSIESALTVFRAISKKKVGHWTAMIVGLGMH-GMA 398
            ++K+GF  +  +G+ LI +YSKC G +     VF  I+   +  W  MI G   +  ++
Sbjct: 268 MMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIAAPDLVLWNTMISGFSQYEDLS 327

Query: 399 TQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGC 458
              +  F +M   G  P   +F+ V +ACS+    + G++   + I        +     
Sbjct: 328 EDGIWCFREMQHNGFHPDDCSFVCVTSACSNLSSPSVGKQVHALAIKSDIPYNRVSVNNA 387

Query: 459 LVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIK--VAP 516
           LV +  + G + +A+   ++MP   N V   S+++G   HG +         +++  +AP
Sbjct: 388 LVAMYSKCGNVHDARRVFDTMP-EHNMVSLNSMIAGYAQHGVEVESLRLFELMLQKDIAP 446

Query: 517 DTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDP 554
           +TI    VLS      G+ ++  +   MMK+R FR +P
Sbjct: 447 NTITFIAVLSAC-VHTGKVEEGQKYFNMMKER-FRIEP 482


>gi|357125571|ref|XP_003564466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Brachypodium distachyon]
          Length = 600

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/437 (47%), Positives = 284/437 (64%), Gaps = 3/437 (0%)

Query: 254 NAMINGYMKAGDVDSACELFDDM-EIRDLITWNSMIAGYELNGRFMEALELLETMLIGDV 312
             ++N Y +  +V  A  +FD M E ++L+ W+SMI GY   G   EAL L   M    V
Sbjct: 166 TGLLNLYARCEEVALARNVFDGMVEDKNLVAWSSMIGGYSRMGMVNEALGLFRDMQAVGV 225

Query: 313 LPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALT 372
            P++ T+VS +SA A    L+ G+W+H++I + G  VD  L T LI MY+KCG IE A +
Sbjct: 226 NPDEVTMVSVISACAKAGALDLGKWVHAFIDRKGITVDLELSTALIDMYAKCGLIERAKS 285

Query: 373 VFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGL 432
           VF ++ ++    W+AMIVGL MHG+A  AL LF++M ++ ++P  +TF+GVL+AC+H+GL
Sbjct: 286 VFDSMVERDTKAWSAMIVGLAMHGLAEDALGLFSRMLQLKVRPNNVTFVGVLSACAHSGL 345

Query: 433 VNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLL 492
           V+DGRRY+  M  + GIE ++E+YGC+VD+LCR+G L+EA S +  MP+ PN VIW +LL
Sbjct: 346 VDDGRRYWCTM-QELGIEASMENYGCMVDLLCRSGLLDEAFSFVTGMPISPNSVIWRNLL 404

Query: 493 SGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRK 552
             +++    DI E A+  L ++ P     YV+LSN+YA   QWD+V  +R+ MK      
Sbjct: 405 VASKSSNRIDIVELASRRLFELEPQNPENYVLLSNLYALNSQWDRVRYMRKKMKDNNVTV 464

Query: 553 DPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQK 612
             G SSIE  G LH+FVV D SHP+  +I   L E+ +++  AGH P T  VL  + ++ 
Sbjct: 465 VAGCSSIEINGYLHKFVVSDGSHPEIKKIRLVLREIADRVLCAGHKPWTAAVLHDVVEE- 523

Query: 613 EKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDN 672
           EKE  L  HSERLAIA+GL+  K+   IR+VKNLR C DCH VTK++S  Y REIIVRD 
Sbjct: 524 EKEVALCEHSERLAIAYGLLKTKAPHVIRVVKNLRFCPDCHEVTKIISKSYGREIIVRDR 583

Query: 673 SRFHHFKNGSCSCKDFW 689
            RFH F  GSCSC DFW
Sbjct: 584 VRFHRFIGGSCSCNDFW 600



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/279 (32%), Positives = 148/279 (53%), Gaps = 19/279 (6%)

Query: 73  YARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLL------PDNFTLP 126
           YAR++FD+I + P+   YN LI+    +  S  + T    LL R +L      P++FTL 
Sbjct: 76  YARALFDQIPE-PTAFCYNSLIRAVSGSGSSSNSGTTDTFLLYRRMLHAGSPAPNSFTLA 134

Query: 127 CVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAM-DD 185
            V+K    LG   EG+Q+H   F  G     +V + L+++YA+  E+ L R VFD M +D
Sbjct: 135 FVLKACTALG---EGQQLHAQAFGHGLEPSPYVQTGLLNLYARCEEVALARNVFDGMVED 191

Query: 186 KDLVSWNCLIDGYVKKGEVEVAMKLFDEMP----DRDLFSWTCLVDGFSKCGKVEIAREI 241
           K+LV+W+ +I GY + G V  A+ LF +M     + D  +   ++   +K G +++ + +
Sbjct: 192 KNLVAWSSMIGGYSRMGMVNEALGLFRDMQAVGVNPDEVTMVSVISACAKAGALDLGKWV 251

Query: 242 FYRMPNR----NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRF 297
              +  +    +L    A+I+ Y K G ++ A  +FD M  RD   W++MI G  ++G  
Sbjct: 252 HAFIDRKGITVDLELSTALIDMYAKCGLIERAKSVFDSMVERDTKAWSAMIVGLAMHGLA 311

Query: 298 MEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGR 336
            +AL L   ML   V PN+ T V  LSA A   +++ GR
Sbjct: 312 EDALGLFSRMLQLKVRPNNVTFVGVLSACAHSGLVDDGR 350



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 87/353 (24%), Positives = 162/353 (45%), Gaps = 36/353 (10%)

Query: 27  ILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPS 86
           +LK  +   E QQLHA +    L     + + LL+LY       +  AR++FD +++  +
Sbjct: 136 VLKACTALGEGQQLHAQAFGHGLEPSPYVQTGLLNLYA--RCEEVALARNVFDGMVEDKN 193

Query: 87  LVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHG 146
           LV ++ +I  Y      +EAL LF D+    + PD  T+  VI   A+ GA+  GK +H 
Sbjct: 194 LVAWSSMIGGYSRMGMVNEALGLFRDMQAVGVNPDEVTMVSVISACAKAGALDLGKWVHA 253

Query: 147 LVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEV 206
            + + G   D  + ++L+ MYAK G I+  + VFD+M ++D  +W+ +I G    G  E 
Sbjct: 254 FIDRKGITVDLELSTALIDMYAKCGLIERAKSVFDSMVERDTKAWSAMIVGLAMHGLAED 313

Query: 207 AMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMP----NRNLVSWNAMIN 258
           A+ LF  M    +     ++  ++   +  G V+  R  +  M       ++ ++  M++
Sbjct: 314 ALGLFSRMLQLKVRPNNVTFVGVLSACAHSGLVDDGRRYWCTMQELGIEASMENYGCMVD 373

Query: 259 GYMKAGDVDSACELFDDMEIR-DLITWNSMIAGYELNGRFMEALELLETML--IGDVLPN 315
              ++G +D A      M I  + + W +++   + + R ++ +EL    L  +    P 
Sbjct: 374 LLCRSGLLDEAFSFVTGMPISPNSVIWRNLLVASKSSNR-IDIVELASRRLFELEPQNPE 432

Query: 316 DATLVSALSA----------------------VAGLAVLNKGRWMHSYIVKNG 346
           +  L+S L A                      VAG + +    ++H ++V +G
Sbjct: 433 NYVLLSNLYALNSQWDRVRYMRKKMKDNNVTVVAGCSSIEINGYLHKFVVSDG 485



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 110/220 (50%), Gaps = 8/220 (3%)

Query: 310 GDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIES 369
           G   PN  TL   L A   L    +G+ +H+    +G      + T L+ +Y++C  +  
Sbjct: 124 GSPAPNSFTLAFVLKACTALG---EGQQLHAQAFGHGLEPSPYVQTGLLNLYARCEEVAL 180

Query: 370 ALTVFRA-ISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACS 428
           A  VF   +  K +  W++MI G    GM  +AL LF  M  +G+ P  +T + V++AC+
Sbjct: 181 ARNVFDGMVEDKNLVAWSSMIGGYSRMGMVNEALGLFRDMQAVGVNPDEVTMVSVISACA 240

Query: 429 HAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIW 488
            AG ++ G ++ +  I+  GI   +E    L+D+  + G +E AKS  +SM  R +   W
Sbjct: 241 KAGALDLG-KWVHAFIDRKGITVDLELSTALIDMYAKCGLIERAKSVFDSMVER-DTKAW 298

Query: 489 MSLLSGARNHGNKD--IGEYAANNLIKVAPDTIGCYVVLS 526
            +++ G   HG  +  +G ++    +KV P+ +    VLS
Sbjct: 299 SAMIVGLAMHGLAEDALGLFSRMLQLKVRPNNVTFVGVLS 338


>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Glycine max]
          Length = 609

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 211/569 (37%), Positives = 330/569 (57%), Gaps = 16/569 (2%)

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAK---FGEIDLGRRVFDAMDDKDLVS 190
           +  +++E KQI     K     +  VL+ L++          +D   R+FD +   D+V 
Sbjct: 44  KCTSLRELKQIQAYTIKTHQN-NPTVLTKLINFCTSNPTIASMDHAHRMFDKIPQPDIVL 102

Query: 191 WNCLIDGYVKKGEVEVAMKLFDE------MPDRDLFSWTCLVDGFSKCGKVEIAREIFYR 244
           +N +  GY +  +   A+ L  +      +PD   ++++ L+   ++   +E  +++   
Sbjct: 103 FNTMARGYARFDDPLRAILLCSQVLCSGLLPDD--YTFSSLLKACARLKALEEGKQLHCL 160

Query: 245 MPN----RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEA 300
                   N+     +IN Y    DVD+A  +FD +    ++ +N++I     N R  EA
Sbjct: 161 AVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDKIGEPCVVAYNAIITSCARNSRPNEA 220

Query: 301 LELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQM 360
           L L   +    + P D T++ ALS+ A L  L+ GRW+H Y+ KNGF     + T LI M
Sbjct: 221 LALFRELQESGLKPTDVTMLVALSSCALLGALDLGRWIHEYVKKNGFDQYVKVNTALIDM 280

Query: 361 YSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITF 420
           Y+KCGS++ A++VF+ + ++    W+AMIV    HG  +QA+ +  +M +  ++P  ITF
Sbjct: 281 YAKCGSLDDAVSVFKDMPRRDTQAWSAMIVAYATHGHGSQAISMLREMKKAKVQPDEITF 340

Query: 421 IGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP 480
           +G+L ACSH GLV +G  YF+ M ++YGI P+I+HYGC++D+L R G LEEA   I+ +P
Sbjct: 341 LGILYACSHTGLVEEGYEYFHSMTHEYGIVPSIKHYGCMIDLLGRAGRLEEACKFIDELP 400

Query: 481 MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSE 540
           ++P  ++W +LLS   +HGN ++ +     + ++     G YV+LSN+ A  G+WD V+ 
Sbjct: 401 IKPTPILWRTLLSSCSSHGNVEMAKLVIQRIFELDDSHGGDYVILSNLCARNGRWDDVNH 460

Query: 541 VREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPD 600
           +R+MM  +G  K PG SSIE   V+HEF  GD  H  +  +H  L E+  +LK AG+VPD
Sbjct: 461 LRKMMVDKGALKVPGCSSIEVNNVVHEFFSGDGVHSTSTILHHALDELVKELKLAGYVPD 520

Query: 601 TTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLS 660
           T+ V     + +EKE  L  HSE+LAI +GL+N    + IR+VKNLRVC DCH+  K +S
Sbjct: 521 TSLVFYADIEDEEKEIVLRYHSEKLAITYGLLNTPPGTTIRVVKNLRVCVDCHNAAKFIS 580

Query: 661 GIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            I+ R+II+RD  RFHHFK+G CSC D+W
Sbjct: 581 LIFGRQIILRDVQRFHHFKDGKCSCGDYW 609



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 117/456 (25%), Positives = 214/456 (46%), Gaps = 16/456 (3%)

Query: 1   MQTQTLQHSSPIHALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLL 60
           + T+  +H     AL+   PS    +++   ++ +E +Q+ A ++KT+    + ++  + 
Sbjct: 17  LNTEAPRHEPNTAALEP--PSSSILSLIPKCTSLRELKQIQAYTIKTHQNNPTVLTKLIN 74

Query: 61  SLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLP 120
               +P I ++ +A  +FD+I Q P +VL+N + + Y        A+ L   +L   LLP
Sbjct: 75  FCTSNPTIASMDHAHRMFDKIPQ-PDIVLFNTMARGYARFDDPLRAILLCSQVLCSGLLP 133

Query: 121 DNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVF 180
           D++T   ++K  ARL A++EGKQ+H L  KLG G + +V  +L++MY    ++D  RRVF
Sbjct: 134 DDYTFSSLLKACARLKALEEGKQLHCLAVKLGVGDNMYVCPTLINMYTACNDVDAARRVF 193

Query: 181 DAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL--FSWTCLVDGFSKC---GKV 235
           D + +  +V++N +I    +      A+ LF E+ +  L     T LV   S C   G +
Sbjct: 194 DKIGEPCVVAYNAIITSCARNSRPNEALALFRELQESGLKPTDVTMLV-ALSSCALLGAL 252

Query: 236 EIAREIFYRMPNRNLVSW----NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGY 291
           ++ R I   +       +     A+I+ Y K G +D A  +F DM  RD   W++MI  Y
Sbjct: 253 DLGRWIHEYVKKNGFDQYVKVNTALIDMYAKCGSLDDAVSVFKDMPRRDTQAWSAMIVAY 312

Query: 292 ELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKG-RWMHSYIVKNGFVVD 350
             +G   +A+ +L  M    V P++ T +  L A +   ++ +G  + HS   + G V  
Sbjct: 313 ATHGHGSQAISMLREMKKAKVQPDEITFLGILYACSHTGLVEEGYEYFHSMTHEYGIVPS 372

Query: 351 GVLGTLLIQMYSKCGSIESALTVFRAISKKKVG-HWTAMIVGLGMHGMATQALDLFNKMC 409
                 +I +  + G +E A      +  K     W  ++     HG    A  +  ++ 
Sbjct: 373 IKHYGCMIDLLGRAGRLEEACKFIDELPIKPTPILWRTLLSSCSSHGNVEMAKLVIQRIF 432

Query: 410 RMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN 445
            +        ++ + N C+  G  +D      MM++
Sbjct: 433 ELD-DSHGGDYVILSNLCARNGRWDDVNHLRKMMVD 467


>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1176

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 218/618 (35%), Positives = 347/618 (56%), Gaps = 12/618 (1%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYV 98
           QLH+   K  +     +   LL LYV     ++  A  IF+      ++VL+NL++  + 
Sbjct: 265 QLHSYLFKAGISSDYIMEGSLLDLYVK--CGDVETALVIFNSS-DRTNVVLWNLMLVAFG 321

Query: 99  FNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKF 158
                 ++  LFC +    + P+ FT PC+++       I  G+QIH L  K GF  D +
Sbjct: 322 QINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMY 381

Query: 159 VLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRD 218
           V   L+ MY+K+G ++  RRV + + +KD+VSW  +I GYV+    + A+  F EM    
Sbjct: 382 VSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCG 441

Query: 219 LFSWTC-LVDGFSKCGKVEIARE-------IFYRMPNRNLVSWNAMINGYMKAGDVDSAC 270
           ++     L    S C  +   R+       I+    + ++  WNA++N Y + G +  A 
Sbjct: 442 IWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAF 501

Query: 271 ELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLA 330
             F+++E +D ITWN +++G+  +G   EAL++   M    V  N  T VSALSA A LA
Sbjct: 502 SSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLA 561

Query: 331 VLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIV 390
            + +G+ +H+ ++K G   +  +G  LI +Y KCGS E A   F  +S++    W  +I 
Sbjct: 562 EIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIIT 621

Query: 391 GLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIE 450
               HG   +ALDLF++M + G+KP  +TFIGVL ACSH GLV +G  YF  M ++YGI 
Sbjct: 622 SCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIR 681

Query: 451 PTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANN 510
           P  +HY C++DI  R G L+ AK  IE MP+  + ++W +LLS  + H N ++GE+AA +
Sbjct: 682 PRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKH 741

Query: 511 LIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVV 570
           L+++ P     YV+LSN YA   +W    +VR+MM+ RG RK+PG S IE + V+H F V
Sbjct: 742 LLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKNVVHAFFV 801

Query: 571 GDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFG 630
           GD+ HP  ++I++ L+ + +++   G+  +   +    E +     +L  HSE+LA+ FG
Sbjct: 802 GDRLHPLAEQIYNFLAVINDRVAKVGYKQEKYHLFHDKEQEGRDPTDL-VHSEKLAVTFG 860

Query: 631 LINVKSRSPIRIVKNLRV 648
           L+++    P+R++KNLRV
Sbjct: 861 LMSLPPCMPLRVIKNLRV 878



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 112/394 (28%), Positives = 191/394 (48%), Gaps = 12/394 (3%)

Query: 143 QIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKG 202
           +IH      G G  + V + L+ +Y+K G +   RRVF+ +  +D VSW  ++ GY + G
Sbjct: 63  EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNG 122

Query: 203 EVEVAMKLFDEMPDRDLFSWTCLVDG-FSKCGKVEI---AREIFYRMPNRNLVS----WN 254
             E A+ L+ +M    +     ++    S C K E+    R I  +       S     N
Sbjct: 123 LGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGN 182

Query: 255 AMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLP 314
           A+I  Y++ G    A  +F DM  RD +T+N++I+G+   G    ALE+ E M    + P
Sbjct: 183 AVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSP 242

Query: 315 NDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVF 374
           +  T+ S L+A A L  L KG  +HSY+ K G   D ++   L+ +Y KCG +E+AL +F
Sbjct: 243 DCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIF 302

Query: 375 RAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVN 434
            +  +  V  W  M+V  G      ++ +LF +M   G++P   T+  +L  C+    ++
Sbjct: 303 NSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREID 362

Query: 435 DGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG 494
            G +  ++ +   G E  +   G L+D+  + G+LE+A+  +E M    + V W S+++G
Sbjct: 363 LGEQIHSLSVKT-GFESDMYVSGVLIDMYSKYGWLEKARRVLE-MLKEKDVVSWTSMIAG 420

Query: 495 ARNHG--NKDIGEYAANNLIKVAPDTIGCYVVLS 526
              H      +  +       + PD IG    +S
Sbjct: 421 YVQHECCKDALAAFKEMQKCGIWPDNIGLASAIS 454



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 118/470 (25%), Positives = 222/470 (47%), Gaps = 15/470 (3%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYV 98
           ++HA +V   L  +  + + L+ LY    +  +  AR +F+ +    + V +  ++  Y 
Sbjct: 63  EIHAKAVTRGLGKYRIVGNLLIDLYSKNGL--VLPARRVFEELSARDN-VSWVAMLSGYA 119

Query: 99  FNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKF 158
            N    EAL L+  +    ++P  + L  V+    +     +G+ IH   +K GF  + F
Sbjct: 120 QNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIF 179

Query: 159 VLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP--- 215
           V ++++++Y + G   L  RVF  M  +D V++N LI G+ + G  E A+++F+EM    
Sbjct: 180 VGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSG 239

Query: 216 -DRDLFSWTCLVDGFSKCGKVEIARE----IFYRMPNRNLVSWNAMINGYMKAGDVDSAC 270
              D  + + L+   +  G ++   +    +F    + + +   ++++ Y+K GDV++A 
Sbjct: 240 LSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETAL 299

Query: 271 ELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLA 330
            +F+  +  +++ WN M+  +       ++ EL   M    + PN  T    L       
Sbjct: 300 VIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTR 359

Query: 331 VLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIV 390
            ++ G  +HS  VK GF  D  +  +LI MYSK G +E A  V   + +K V  WT+MI 
Sbjct: 360 EIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIA 419

Query: 391 GLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR-YFNMMINDYGI 449
           G   H     AL  F +M + G+ P  I     ++ C+    +  G + +  + ++ Y  
Sbjct: 420 GYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSG 479

Query: 450 EPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
           + +I  +  LV++  R G + EA S+ E +  +   + W  L+SG    G
Sbjct: 480 DVSI--WNALVNLYARCGRIREAFSSFEEIEHKDE-ITWNGLVSGFAQSG 526



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 159/306 (51%), Gaps = 11/306 (3%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +Q+H+LSVKT       +S  L+ +Y       L  AR + + +L+   +V +  +I  Y
Sbjct: 365 EQIHSLSVKTGFESDMYVSGVLIDMY--SKYGWLEKARRVLE-MLKEKDVVSWTSMIAGY 421

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
           V ++   +AL  F ++    + PDN  L   I G A + A+++G QIH  ++  G+  D 
Sbjct: 422 VQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDV 481

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD- 216
            + ++LV++YA+ G I      F+ ++ KD ++WN L+ G+ + G  E A+K+F  M   
Sbjct: 482 SIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQS 541

Query: 217 ---RDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR----NLVSWNAMINGYMKAGDVDSA 269
               ++F++   +   +   +++  ++I  R+            NA+I+ Y K G  + A
Sbjct: 542 GVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDA 601

Query: 270 CELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGL 329
              F +M  R+ ++WN++I     +GR +EAL+L + M    + PND T +  L+A + +
Sbjct: 602 KMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHV 661

Query: 330 AVLNKG 335
            ++ +G
Sbjct: 662 GLVEEG 667



 Score = 44.3 bits (103), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 42/201 (20%), Positives = 88/201 (43%), Gaps = 8/201 (3%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           K+ +Q+HA  +KT   + + + + L+SLY      +   A+  F  + +    V +N +I
Sbjct: 564 KQGKQIHARVIKTGHSFETEVGNALISLY--GKCGSFEDAKMEFSEMSERNE-VSWNTII 620

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEG-KQIHGLVFKLGF 153
                + R  EAL LF  +    + P++ T   V+   + +G ++EG      +  + G 
Sbjct: 621 TSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGI 680

Query: 154 GFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD-DKDLVSWNCLIDGYVKKGEVEV---AMK 209
                  + ++ ++ + G++D  ++  + M    D + W  L+        +EV   A K
Sbjct: 681 RPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAK 740

Query: 210 LFDEMPDRDLFSWTCLVDGFS 230
              E+   D  S+  L + ++
Sbjct: 741 HLLELEPHDSASYVLLSNAYA 761


>gi|224137994|ref|XP_002322703.1| predicted protein [Populus trichocarpa]
 gi|222867333|gb|EEF04464.1| predicted protein [Populus trichocarpa]
          Length = 627

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 214/585 (36%), Positives = 335/585 (57%), Gaps = 13/585 (2%)

Query: 115 DRFLLPDNFTLPC-VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEI 173
           +RF     +   C ++    R  ++ +G+QIH  + K G      V   L++ Y+K    
Sbjct: 46  NRFCSEKKYGHICDLLLSQTRSRSLLKGQQIHAHIIKSGLQVIPLVCHYLINFYSKTQLP 105

Query: 174 DLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDRDLF---SWTC 224
            L  +VF+  + K   +W+ +I  + +  E  +A++ F  M      PD  +F   +  C
Sbjct: 106 LLSSQVFEESERKSSTTWSSVISSFAQNEEPVLAIQYFCRMIGENLCPDDHIFPSATKAC 165

Query: 225 LVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITW 284
            + G    GK  +   +     + ++   +++++ Y K GD+  A  +FD+M  R++++W
Sbjct: 166 AILGRCDVGK-SVHCLVIKTGYDVDVFVGSSLVDMYAKCGDIKEARNVFDEMPHRNVVSW 224

Query: 285 NSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVK 344
           + MI GY   G   EA+ L +  L+  +  ND TL S +       +L  G+ +H    K
Sbjct: 225 SGMIYGYTQLGEHEEAMRLFKEALLEGLDVNDFTLSSVIRVCGSATLLELGKQIHGLCFK 284

Query: 345 NGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDL 404
             + + G +G+ LI +YSKCG IE A  VF  +  K +G W AM++    H    +A DL
Sbjct: 285 TSYDLSGFVGSSLISLYSKCGLIEGAYRVFDEVPIKNLGMWNAMLIACAQHAHTKEAFDL 344

Query: 405 FNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILC 464
           F KM   GM+P  ITF+ VL ACSHAGLV +G++YF +M   Y IEP  +HY  +VD+L 
Sbjct: 345 FTKMENAGMRPNFITFLCVLYACSHAGLVEEGKKYFALM-KKYEIEPGTQHYASMVDLLG 403

Query: 465 RTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVV 524
           R G L+EA S I+ MP  P   +W + ++G R HGN D+  +AA+ + ++   + G +V+
Sbjct: 404 RAGKLQEALSVIKGMPTEPTESVWGAFITGCRIHGNTDLAAFAADKVFELGAVSSGLHVM 463

Query: 525 LSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSK 584
           LSN YAAAG+++  ++ R+M++ RG +K+ G S IE    +H+F  GD+ H +  EI+ K
Sbjct: 464 LSNAYAAAGRYEDAAKARKMLRDRGVKKETGLSWIEEGNRVHKFAAGDRFHVRMKEIYQK 523

Query: 585 LSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVK 644
           L ++  +++ AG+V DT+ VL  +  + EK   +  HSERLAIAFGLI++    PIRI+K
Sbjct: 524 LEDLGEEMERAGYVADTSFVLREVGSE-EKNQTIRYHSERLAIAFGLISIPLGRPIRIMK 582

Query: 645 NLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           NLRVC DCH+  K +S +  R IIVRDN+RFH F++G CSC D+W
Sbjct: 583 NLRVCGDCHNAIKFISKLSGRVIIVRDNNRFHRFEDGKCSCADYW 627



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 123/470 (26%), Positives = 217/470 (46%), Gaps = 27/470 (5%)

Query: 1   MQTQTLQHSSPIHALQQHLPSRL-------HWNILKFSSTHKET----QQLHALSVKTNL 49
           ++TQ+L     I    Q+ P+R        H   L  S T   +    QQ+HA  +K+ L
Sbjct: 28  IKTQSLSQEGTI--TPQNSPNRFCSEKKYGHICDLLLSQTRSRSLLKGQQIHAHIIKSGL 85

Query: 50  IYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTL 109
                +   L++ Y    +  L  +  +F+   +  S   ++ +I  +  N+    A+  
Sbjct: 86  QVIPLVCHYLINFYSKTQLPLL--SSQVFEES-ERKSSTTWSSVISSFAQNEEPVLAIQY 142

Query: 110 FCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAK 169
           FC ++   L PD+   P   K  A LG    GK +H LV K G+  D FV SSLV MYAK
Sbjct: 143 FCRMIGENLCPDDHIFPSATKACAILGRCDVGKSVHCLVIKTGYDVDVFVGSSLVDMYAK 202

Query: 170 FGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM----PDRDLFSWTCL 225
            G+I   R VFD M  +++VSW+ +I GY + GE E AM+LF E      D + F+ + +
Sbjct: 203 CGDIKEARNVFDEMPHRNVVSWSGMIYGYTQLGEHEEAMRLFKEALLEGLDVNDFTLSSV 262

Query: 226 VDGFSKCGKVEIAREI----FYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDL 281
           +        +E+ ++I    F    + +    +++I+ Y K G ++ A  +FD++ I++L
Sbjct: 263 IRVCGSATLLELGKQIHGLCFKTSYDLSGFVGSSLISLYSKCGLIEGAYRVFDEVPIKNL 322

Query: 282 ITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSY 341
             WN+M+     +    EA +L   M    + PN  T +  L A +   ++ +G+   + 
Sbjct: 323 GMWNAMLIACAQHAHTKEAFDLFTKMENAGMRPNFITFLCVLYACSHAGLVEEGKKYFAL 382

Query: 342 IVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGH-WTAMIVGLGMHGMATQ 400
           + K            ++ +  + G ++ AL+V + +  +     W A I G  +HG    
Sbjct: 383 MKKYEIEPGTQHYASMVDLLGRAGKLQEALSVIKGMPTEPTESVWGAFITGCRIHGNTDL 442

Query: 401 ALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIE 450
           A    +K+  +G   + +  + + NA + AG   D  +    M+ D G++
Sbjct: 443 AAFAADKVFELGAVSSGLHVM-LSNAYAAAGRYEDAAKA-RKMLRDRGVK 490


>gi|449480927|ref|XP_004156032.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 229/632 (36%), Positives = 349/632 (55%), Gaps = 20/632 (3%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           A  +FD + Q P  V YN LI  Y     +  A  LF ++ + FL  D FTL  +I    
Sbjct: 93  AHQLFDEMPQ-PDSVSYNTLIAAYARRGDTQPAFQLFLEMREAFLDMDGFTLSGIITACG 151

Query: 134 -RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAM-DDKDLVSW 191
             +G I+   Q+H L    G      V ++L++ Y+K G +   RR+F  + +D+D VSW
Sbjct: 152 INVGLIR---QLHALSVVTGLDSYVSVGNALITSYSKNGFLKEARRIFHWLSEDRDEVSW 208

Query: 192 NCLIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKC----GKVEIAREIFY 243
           N ++  Y++  E   A++L+ EM  R    D+F+   ++  F+      G ++   ++  
Sbjct: 209 NSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQFHAKLIK 268

Query: 244 RMPNRNLVSWNAMINGYMKAGDVDSAC-ELFDDMEIRDLITWNSMIAGYELNGRFM-EAL 301
              ++N    + +I+ Y K G     C ++FD++   DL+ WN+MI+GY L      EAL
Sbjct: 269 SGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYEDLSDEAL 328

Query: 302 ELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV-LGTLLIQM 360
           E    +      P+D +LV  +SA + ++  ++GR +H   +K     + + +   LI M
Sbjct: 329 ECFRQLQGVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKLDIPSNRISVNNALIAM 388

Query: 361 YSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITF 420
           YSKCG++  A T+F  + +     + +MI G   HGM  Q+L LF +M  M   PT ITF
Sbjct: 389 YSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMDFTPTNITF 448

Query: 421 IGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP 480
           I VL AC+H G V DG+ YFNMM   +GIEP   H+ C++D+L R G L EA+  IE++P
Sbjct: 449 ISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRAGKLSEAERLIETIP 508

Query: 481 MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSE 540
             P F  W +LL   R HGN ++   AAN L+++ P     YV+L+NIY+  G+    + 
Sbjct: 509 FDPGFFXWSALLGACRIHGNVELAIKAANRLLQLDPLNAAPYVMLANIYSDNGRLQDAAS 568

Query: 541 VREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPD 600
           VR++M+ RG +K PG S IE    +H FV  D  HP   +I   L EM  K+K  G+ P+
Sbjct: 569 VRKLMRDRGVKKKPGCSWIEVNRRIHIFVAEDTFHPMIKKIQEYLEEMMRKIKKVGYTPE 628

Query: 601 TTQVLLCIED---QKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTK 657
                +  +D   Q+E+E  L +HSE+LA++FGL++ +   PI + KNLR+C DCH+  K
Sbjct: 629 VRSASVGGDDRVWQREEELRLGHHSEKLAVSFGLMSTREGEPILVFKNLRICVDCHNAIK 688

Query: 658 LLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            +S +  REI VRD+ RFH FK+G CSC  +W
Sbjct: 689 YISEVVKREITVRDSHRFHCFKDGQCSCGGYW 720



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 110/402 (27%), Positives = 190/402 (47%), Gaps = 41/402 (10%)

Query: 138 IKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDG 197
           ++ GK +H L  K       ++ +  + +Y+K   +   RRVFD   D ++ S+N LI  
Sbjct: 24  LRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHTHDCNVFSFNTLISA 83

Query: 198 YVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMP----------- 246
           Y K+  VEVA +LFDEMP  D  S+  L+  +++ G  + A ++F  M            
Sbjct: 84  YAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMREAFLDMDGFTL 143

Query: 247 ---------NRNLVSW-----------------NAMINGYMKAGDVDSACELFDDM-EIR 279
                    N  L+                   NA+I  Y K G +  A  +F  + E R
Sbjct: 144 SGIITACGINVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFLKEARRIFHWLSEDR 203

Query: 280 DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMH 339
           D ++WNSM+  Y  +    +ALEL   M +  ++ +  TL S L+A   +  L  G   H
Sbjct: 204 DEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQFH 263

Query: 340 SYIVKNGFVVDGVLGTLLIQMYSKCGS-IESALTVFRAISKKKVGHWTAMIVGLGMH-GM 397
           + ++K+G+  +  +G+ LI +YSKCG  +     VF  IS   +  W  MI G  ++  +
Sbjct: 264 AKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYEDL 323

Query: 398 ATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYG 457
           + +AL+ F ++  +G +P   + + V++ACS+    + GR+   + +        I    
Sbjct: 324 SDEALECFRQLQGVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKLDIPSNRISVNN 383

Query: 458 CLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
            L+ +  + G L +AK+  ++MP   N V + S+++G   HG
Sbjct: 384 ALIAMYSKCGNLRDAKTLFDTMP-EHNTVSYNSMIAGYAQHG 424



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 114/428 (26%), Positives = 204/428 (47%), Gaps = 21/428 (4%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +QLHALSV T L  +  + + L++ Y       L  AR IF  + +    V +N ++  Y
Sbjct: 158 RQLHALSVVTGLDSYVSVGNALITSYSKNGF--LKEARRIFHWLSEDRDEVSWNSMVVAY 215

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
           + ++   +AL L+ ++  R L+ D FTL  V+     +  +  G Q H  + K G+  + 
Sbjct: 216 MQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNS 275

Query: 158 FVLSSLVSMYAKFGEIDLG-RRVFDAMDDKDLVSWNCLIDGYVKKGEV-EVAMKLFDEMP 215
            V S L+ +Y+K G   L  R+VFD + + DLV WN +I GY    ++ + A++ F ++ 
Sbjct: 276 HVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQ 335

Query: 216 D----RDLFSWTCLVDGFSKCGKVEIAREIF-----YRMPNRNLVSWNAMINGYMKAGDV 266
                 D  S  C++   S        R++        +P+  +   NA+I  Y K G++
Sbjct: 336 GVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNL 395

Query: 267 DSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326
             A  LFD M   + +++NSMIAGY  +G   ++L L + ML  D  P + T +S L+A 
Sbjct: 396 RDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMDFTPTNITFISVLAAC 455

Query: 327 AGLAVLNKGRWMHSYIVKNGFVVDGVLG--TLLIQMYSKCGSIESALTVFRAIS-KKKVG 383
           A    +  G+ ++  ++K  F ++   G  + +I +  + G +  A  +   I       
Sbjct: 456 AHTGRVEDGK-IYFNMMKQKFGIEPEAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFF 514

Query: 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKP-TAITFIGVLNACSHAGLVNDGRRYFNM 442
            W+A++    +HG    A+   N++  + + P  A  ++ + N  S  G + D      +
Sbjct: 515 XWSALLGACRIHGNVELAIKAANRL--LQLDPLNAAPYVMLANIYSDNGRLQDAASVRKL 572

Query: 443 MINDYGIE 450
           M  D G++
Sbjct: 573 M-RDRGVK 579


>gi|297743099|emb|CBI35966.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 222/617 (35%), Positives = 348/617 (56%), Gaps = 49/617 (7%)

Query: 26  NILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHP 85
           ++L+ +++  +  Q+HA      LI+   + + L+   +D H  ++ YAR + D+    P
Sbjct: 4   SLLRTATSLTQIHQIHA----QTLIHGLPLQTHLIPKLIDLH--SIDYARFVLDQT-PSP 56

Query: 86  SLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIH 145
           +   +N LI+ Y  +     +L L+  +L     P NFT P V+K  + LG++ EG+QIH
Sbjct: 57  TDFSWNSLIRAYTVHGSPQNSLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVLEGEQIH 116

Query: 146 GLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVE 205
             V +LGFG D FV +SL+ MY K   +D  R  +D M  +D VSWN +I GYV+ G+VE
Sbjct: 117 THVLRLGFGSDLFVCNSLIDMYCKCFRLDSARNFWDDMGFRDEVSWNSIISGYVQWGQVE 176

Query: 206 VAMKLFDEMP-DRDLFSWTCLVDGFSKCGKVEIAREIFYRM--------PNR-------- 248
            A  LF+EMP  R++  WT +++G+ K G       +F +M        PN         
Sbjct: 177 KARDLFEEMPMRRNVVCWTAMINGYGKEGDFVEMLSLFRQMLVSADEVQPNAATMVCLLS 236

Query: 249 -------------------------NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLIT 283
                                    N +   A+I+ Y K GDV+ A  +FD +  ++L +
Sbjct: 237 ACSTLCNYEVGRFLSVFIDVNKIPLNTILVTALIDMYSKCGDVEKAWRIFDGVSCKNLPS 296

Query: 284 WNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIV 343
           WN++I G    G   EA++L   M    V PN+ TLV+ LSA AGL  L  GR +H Y+ 
Sbjct: 297 WNAIITGCVQGGLLEEAIDLYRHMKAQSVKPNEITLVNVLSACAGLGALELGREVHLYLG 356

Query: 344 KNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALD 403
           +NG  ++ +L T L+ MY+KCG I+ A  +F   S+K V  W AMI+GL  HG    +L 
Sbjct: 357 RNGLDLNVILATALVDMYAKCGKIDDACLIFVKTSEKDVALWNAMILGLAYHGDGRDSLA 416

Query: 404 LFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDIL 463
           +F++M R G++P  +TFIGVL+AC+H+GLV +GR  F+ M + +G+ P +EHY C+VD+L
Sbjct: 417 VFSQMVRAGVQPNDVTFIGVLSACNHSGLVEEGRVQFSSMADKHGLSPKLEHYACMVDLL 476

Query: 464 CRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYV 523
            R G+L+EA   +++M + P+ +IW +LLS  R H N ++ +  +  ++      IG  +
Sbjct: 477 GRAGHLKEAYELVQNMLIPPDSIIWGALLSACRIHRNLELADKISETIMASQDPNIGFCI 536

Query: 524 VLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHS 583
           +LSNIYA++G+W  V+ VR  +K++  +K  G S +E  GV+H FVV D +H ++ EI+ 
Sbjct: 537 LLSNIYASSGRWKDVARVRRQVKEKRIKKPSGCSWVEVDGVVHRFVVEDTTHLKSGEIYG 596

Query: 584 KLSEMRNKLKAAGHVPD 600
               + N LKA G+V +
Sbjct: 597 AYEILVNHLKAEGYVAN 613


>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
          Length = 1091

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 224/656 (34%), Positives = 362/656 (55%), Gaps = 13/656 (1%)

Query: 41   HALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFN 100
            H   VK        + + L+S Y     N +  A  +F+R+ +  + + +N +I     N
Sbjct: 440  HGYIVKLGFGAQCAVCNALISFYAKS--NMIGDAVLVFNRMPRQDT-ISWNSVISGCSSN 496

Query: 101  QRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVL 160
              + EA+ LF  +  +    D+ TL  V+   A+      G+ +HG   K G   +  + 
Sbjct: 497  GLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIGETSLA 556

Query: 161  SSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP----D 216
            ++L+ MY+   +     ++F +M  K++VSW  +I  Y++ G  +    L  EM      
Sbjct: 557  NALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEMVLDGIR 616

Query: 217  RDLFSWTCLVDGFSKCGKVEIAREIF-YRMPN---RNLVSWNAMINGYMKAGDVDSACEL 272
             D+F+ T  +  F+    ++  + +  Y + N   + L   NA++  Y+K  +V+ A  +
Sbjct: 617  PDVFAVTSALHAFAGDESLKQGKSVHGYTIRNGMEKLLPVANALMEMYVKCRNVEEARLI 676

Query: 273  FDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVL 332
            FD +  +D+I+WN++I GY  N    E+  L   ML+    PN  T+   L A A ++ L
Sbjct: 677  FDRVTNKDVISWNTLIGGYSRNNFPNESFSLFSDMLL-QFRPNAVTMTCILPAAASISSL 735

Query: 333  NKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGL 392
             +GR +H+Y ++ GF+ D      L+ MY KCG++  A  +F  ++KK +  WT MI G 
Sbjct: 736  ERGREIHAYALRRGFLEDSYASNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGY 795

Query: 393  GMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT 452
            GMHG    A+ LF +M   G++P A +F  +L AC H+GL  +GRR+F  M  +Y IEP 
Sbjct: 796  GMHGFGKHAIALFEQMRGSGIEPDAASFSAILYACCHSGLAAEGRRFFKAMQKEYKIEPK 855

Query: 453  IEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLI 512
            ++HY C+VD+L RTG L+EA   IESMP+ P+  IW+SLL G R H N  + E  A+ + 
Sbjct: 856  LKHYTCIVDLLSRTGDLKEALEFIESMPIEPDSSIWVSLLHGCRIHKNVKLAEKVADKVF 915

Query: 513  KVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGD 572
            K+ P+  G YV+L+NIYA A +W+ V +++  +  RG R++ G S IE R  +H F+  +
Sbjct: 916  KLEPENTGYYVLLANIYAEAERWEAVKKLKNKIGGRGLRENTGYSWIEVRSKVHVFIADN 975

Query: 573  KSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLI 632
            ++HP  + I   L ++  +++  GH P     L+  +D    EA L  HS +LA+AFG++
Sbjct: 976  RNHPDWNRIAEFLDDVARRMRQEGHDPKKKYALMGADDAVHDEA-LCGHSSKLAVAFGVL 1034

Query: 633  NVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDF 688
            N+    PIR+ KN +VC+ CH   K +S + NREII+RD+SRFH F+ G CSC+ +
Sbjct: 1035 NLPEGRPIRVTKNSKVCSHCHEAAKFISKMCNREIILRDSSRFHRFEGGRCSCRGY 1090



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 149/572 (26%), Positives = 259/572 (45%), Gaps = 67/572 (11%)

Query: 35  KETQQLHALSVKTNLIYHSGISS----RLLSLYVDPHINNLHYARSIFDRIL-QHPSLVL 89
           +  ++ HAL   ++     G  S    RL+  Y+     +L  AR++FD +  Q   + +
Sbjct: 114 EAAKRAHALIRASSAAATGGKGSVLGKRLVLAYLK--CGDLGEARTVFDGMPPQAADVRV 171

Query: 90  YNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVF 149
           +  L+  Y       EA++LF  +    + PD   + CV+K  + LG++ EG+ IHGL+ 
Sbjct: 172 WTSLMSAYAKAGDFQEAVSLFRQMQCCGVSPDAHAVSCVLKCVSSLGSLTEGEVIHGLLE 231

Query: 150 KLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMK 209
           KLG G    V ++L+++Y++ G ++   RVFD+M  +D +SWN +I G    G    A+ 
Sbjct: 232 KLGLGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDAISWNSMIGGCFSNGWHGTAVD 291

Query: 210 LFDEMPDR--DLFSWTCL--VDGFSKCGKVEIAREIF-YRMPNRNLVSWNAMING----- 259
           LF +M  +  ++ S T L  +   +  G   I + +  Y + +  L   +++ +G     
Sbjct: 292 LFSKMWSQGTEISSVTVLSVLPACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAA 351

Query: 260 --------YMKAGDVDSACELFDDMEIR-DLITWNSMIAGYELNGRFMEALELLETMLIG 310
                   Y+K GD+ SA  +FD M  + ++  WN ++ GY   G F E+L L   M   
Sbjct: 352 LGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHEL 411

Query: 311 DVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESA 370
            + P++  +   L  +  L+    G   H YIVK GF     +   LI  Y+K   I  A
Sbjct: 412 GIAPDEHAISCLLKCITCLSCARDGLVAHGYIVKLGFGAQCAVCNALISFYAKSNMIGDA 471

Query: 371 LTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHA 430
           + VF  + ++    W ++I G   +G+ ++A++LF +M   G +  ++T + VL AC+ +
Sbjct: 472 VLVFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQS 531

Query: 431 GLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMS 490
                GR     +++ Y +               +TG + E       + M  N   W S
Sbjct: 532 RYWFAGR-----VVHGYSV---------------KTGLIGETSLANALLDMYSNCSDWQS 571

Query: 491 LLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGF 550
                R+ G K++  + A                +   Y  AG +DKV+ + + M   G 
Sbjct: 572 TNQIFRSMGQKNVVSWTA----------------MITSYMRAGLFDKVAGLLQEMVLDGI 615

Query: 551 RKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIH 582
           R D  + +      LH F  GD+S  Q   +H
Sbjct: 616 RPDVFAVT----SALHAF-AGDESLKQGKSVH 642



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 134/511 (26%), Positives = 224/511 (43%), Gaps = 85/511 (16%)

Query: 38  QQLHALSVKTNLIY-----HSGI-----SSRLLSLYVDPHINNLHYARSIFDRILQHPSL 87
           + +H  SVK+ L++      SGI      S+L+ +YV     ++  AR +FD +    ++
Sbjct: 325 KAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVK--CGDMASARRVFDAMSSKGNV 382

Query: 88  VLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGL 147
            ++NL++  Y       E+L+LF  + +  + PD   + C++K    L   ++G   HG 
Sbjct: 383 HVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDGLVAHGY 442

Query: 148 VFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVA 207
           + KLGFG    V ++L+S YAK   I     VF+ M  +D +SWN +I G    G    A
Sbjct: 443 IVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLNSEA 502

Query: 208 MKLF-------DEMPDRDLFS----------W----------------------TCLVDG 228
           ++LF        E+    L S          W                        L+D 
Sbjct: 503 IELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIGETSLANALLDM 562

Query: 229 FSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMI 288
           +S C   +   +IF  M  +N+VSW AMI  YM+AG       LFD             +
Sbjct: 563 YSNCSDWQSTNQIFRSMGQKNVVSWTAMITSYMRAG-------LFDK------------V 603

Query: 289 AGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFV 348
           AG            LL+ M++  + P+   + SAL A AG   L +G+ +H Y ++NG  
Sbjct: 604 AG------------LLQEMVLDGIRPDVFAVTSALHAFAGDESLKQGKSVHGYTIRNGME 651

Query: 349 VDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKM 408
               +   L++MY KC ++E A  +F  ++ K V  W  +I G   +    ++  LF+ M
Sbjct: 652 KLLPVANALMEMYVKCRNVEEARLIFDRVTNKDVISWNTLIGGYSRNNFPNESFSLFSDM 711

Query: 409 CRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGY 468
             +  +P A+T   +L A +    +  GR      +    +E +      LVD+  + G 
Sbjct: 712 L-LQFRPNAVTMTCILPAAASISSLERGREIHAYALRRGFLEDSYAS-NALVDMYVKCGA 769

Query: 469 LEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
           L  A+   + +  + N + W  +++G   HG
Sbjct: 770 LLVARVLFDRL-TKKNLISWTIMIAGYGMHG 799



 Score = 45.1 bits (105), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 48/241 (19%), Positives = 96/241 (39%), Gaps = 47/241 (19%)

Query: 32  STHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYN 91
           S+ +  +++HA +++   +  S  S+ L+ +YV      L  AR +FDR L   +L+ + 
Sbjct: 733 SSLERGREIHAYALRRGFLEDSYASNALVDMYVK--CGALLVARVLFDR-LTKKNLISWT 789

Query: 92  LLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKL 151
           ++I  Y  +     A+ LF  +    + PD  +   ++      G   E           
Sbjct: 790 IMIAGYGMHGFGKHAIALFEQMRGSGIEPDAASFSAILYACCHSGLAAE----------- 838

Query: 152 GFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD-----DKDLVSWNCLIDGYVKKGEVEV 206
                                   GRR F AM      +  L  + C++D   + G+++ 
Sbjct: 839 ------------------------GRRFFKAMQKEYKIEPKLKHYTCIVDLLSRTGDLKE 874

Query: 207 AMKLFDEMP-DRDLFSWTCLVDGFSKCGKVEIAREI---FYRMPNRNLVSWNAMINGYMK 262
           A++  + MP + D   W  L+ G      V++A ++    +++   N   +  + N Y +
Sbjct: 875 ALEFIESMPIEPDSSIWVSLLHGCRIHKNVKLAEKVADKVFKLEPENTGYYVLLANIYAE 934

Query: 263 A 263
           A
Sbjct: 935 A 935


>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/587 (35%), Positives = 332/587 (56%), Gaps = 11/587 (1%)

Query: 112 DLLDRF-LLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKF 170
           DLLD   L P        I   A+   +++ +++H  +    F  D F+ +SL+ +Y K 
Sbjct: 40  DLLDAGELAPTPRVYHTFITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHLYCKC 99

Query: 171 GEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLV 226
           G +   R+VFD M  KD+VSW  LI GY +    E A+ L   M         F++  L+
Sbjct: 100 GSVLEARKVFDEMRRKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLL 159

Query: 227 DGFSKCGKVEIAREIFYRMP----NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLI 282
                     I R+I         + ++   +A+++ Y + G +D A  +FD ++ ++ +
Sbjct: 160 KAAGAHADSGIGRQIHALAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFDKLDSKNGV 219

Query: 283 TWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYI 342
           +WN++I+G+   G    AL     ML         T  S  S++A L  L +G+W+H+++
Sbjct: 220 SWNALISGFARKGDGETALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHM 279

Query: 343 VKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQAL 402
           +K+   +    G  L+ MY+K GS+  A  VF  +  K +  W  M+     +G+  +A+
Sbjct: 280 IKSRQKMTAFAGNTLLDMYAKSGSMIDARKVFDRVDDKDLVTWNTMLTAFAQYGLGKEAV 339

Query: 403 DLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDI 462
             F +M + G+    +TF+ +L ACSH GLV +G+RYF MM  +Y +EP I+H+  +V +
Sbjct: 340 SHFEEMRKSGIYLNQVTFLCILTACSHGGLVKEGKRYFEMM-KEYDLEPEIDHFVTVVAL 398

Query: 463 LCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCY 522
           L R G L  A   I  MP+ P   +W +LL+  R H N  +G++AA+++ ++ PD  G  
Sbjct: 399 LGRAGLLNFALVFIFKMPIEPTAAVWGALLAACRMHKNAKVGQFAADHVFELDPDDSGPP 458

Query: 523 VVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIH 582
           V+L NIYA+ GQWD  + VR +MK  G +K+P  S +E    +H FV  D +HP+ +EI+
Sbjct: 459 VLLYNIYASTGQWDAAARVRRIMKTTGVKKEPACSWVEMENSVHMFVANDDTHPRAEEIY 518

Query: 583 SKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRI 642
               ++  K++  G+VPD   VLL ++DQ E+EA L+ HSE+LA+AF LI + + + IRI
Sbjct: 519 KMWGQISKKIRKEGYVPDMDYVLLRVDDQ-EREANLQYHSEKLALAFALIEMPAGATIRI 577

Query: 643 VKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           +KN+R+C DCHS  K +S ++ REI+VRD +RFHHF NGSCSC D+W
Sbjct: 578 MKNIRICGDCHSAFKYISKVFGREIVVRDTNRFHHFSNGSCSCADYW 624



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/374 (24%), Positives = 175/374 (46%), Gaps = 12/374 (3%)

Query: 31  SSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLY 90
           S   ++ +++HA    +     + + + L+ LY      ++  AR +FD  ++   +V +
Sbjct: 64  SKNLEDARKVHAHLASSRFAGDAFLDNSLIHLYCK--CGSVLEARKVFDE-MRRKDMVSW 120

Query: 91  NLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFK 150
             LI  Y  N    EA+ L   +L     P+ FT   ++K A        G+QIH L  K
Sbjct: 121 TSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHADSGIGRQIHALAVK 180

Query: 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
             +  D +V S+L+ MYA+ G +D+   VFD +D K+ VSWN LI G+ +KG+ E A+  
Sbjct: 181 CDWHEDVYVGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMT 240

Query: 211 FDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRM----PNRNLVSWNAMINGYMK 262
           F EM         F+++ +    ++ G +E  + +   M          + N +++ Y K
Sbjct: 241 FAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKMTAFAGNTLLDMYAK 300

Query: 263 AGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSA 322
           +G +  A ++FD ++ +DL+TWN+M+  +   G   EA+   E M    +  N  T +  
Sbjct: 301 SGSMIDARKVFDRVDDKDLVTWNTMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQVTFLCI 360

Query: 323 LSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALT-VFRAISKKK 381
           L+A +   ++ +G+     + +     +      ++ +  + G +  AL  +F+   +  
Sbjct: 361 LTACSHGGLVKEGKRYFEMMKEYDLEPEIDHFVTVVALLGRAGLLNFALVFIFKMPIEPT 420

Query: 382 VGHWTAMIVGLGMH 395
              W A++    MH
Sbjct: 421 AAVWGALLAACRMH 434



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 94/205 (45%), Gaps = 4/205 (1%)

Query: 301 LELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQM 360
           L  L+ +  G++ P      + ++A A    L   R +H+++  + F  D  L   LI +
Sbjct: 36  LRDLDLLDAGELAPTPRVYHTFITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHL 95

Query: 361 YSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITF 420
           Y KCGS+  A  VF  + +K +  WT++I G   + M  +A+ L   M +   KP   TF
Sbjct: 96  YCKCGSVLEARKVFDEMRRKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTF 155

Query: 421 IGVLNACSHAGLVNDGRRYFNMMIN-DYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM 479
             +L A         GR+   + +  D+  +  +     L+D+  R G ++ A +  + +
Sbjct: 156 ASLLKAAGAHADSGIGRQIHALAVKCDWHEDVYVG--SALLDMYARCGMMDMATAVFDKL 213

Query: 480 PMRPNFVIWMSLLSGARNHGNKDIG 504
             + N V W +L+SG    G+ +  
Sbjct: 214 DSK-NGVSWNALISGFARKGDGETA 237


>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
          Length = 714

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 213/552 (38%), Positives = 319/552 (57%), Gaps = 41/552 (7%)

Query: 178 RVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEI 237
           RV  +++  D    + L+  Y K G  E A +LFDEMP+RDL SW  L+ G S  G +  
Sbjct: 164 RVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNRDLVSWNSLMSGLSGRGYLGA 223

Query: 238 AREIFYRM-------PNR----NLVSW-----------------------------NAMI 257
               F RM       PN     ++VS                              N++I
Sbjct: 224 CLNAFCRMRTESGRQPNEVTLLSVVSACAXMGALDEGKSLHGVVVKLGMSGKAKVVNSLI 283

Query: 258 NGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDA 317
           N Y K G +D+A +LF++M +R L++WNSM+  +  NG   + ++L   M    + P+ A
Sbjct: 284 NMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQA 343

Query: 318 TLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAI 377
           T+V+ L A     +  +   +H+YI + GF  D ++ T L+ +Y+K G + ++  +F  I
Sbjct: 344 TMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEI 403

Query: 378 SKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGR 437
             +    WTAM+ G  +H    +A+ LF+ M + G++   +TF  +L+ACSH+GLV +G+
Sbjct: 404 KDRDTIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGK 463

Query: 438 RYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARN 497
           +YF +M   Y +EP ++HY C+VD+L R+G LE+A   I+SMPM P+  +W +LL   R 
Sbjct: 464 KYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRV 523

Query: 498 HGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSS 557
           +GN ++G+  A  L+ + P     Y++LSNIY+AAG W   S+VR +MK+R   ++PG S
Sbjct: 524 YGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRXASKVRXLMKERRLTRNPGCS 583

Query: 558 SIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAE 617
            IEH   +H FVVGD+ HP++DEIH+KL E+  K+  AG  P T  VL  I D++ K   
Sbjct: 584 FIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIXEAGCAPKTEFVLHDI-DEEVKVDM 642

Query: 618 LENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHH 677
           +  HSE+LAIAFGL+   S  P+ I KNLR+C DCHS  K  S +  R II+RD+ RFHH
Sbjct: 643 INKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHSTAKFASLLEKRTIIIRDSKRFHH 702

Query: 678 FKNGSCSCKDFW 689
           F +G CSC+D+W
Sbjct: 703 FADGLCSCRDYW 714



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 113/424 (26%), Positives = 191/424 (45%), Gaps = 63/424 (14%)

Query: 40  LHALSVKTNLIYHSG-ISSRLLSLYVDPHINNLHY---ARSIFDRILQHPSLVLYNLLIK 95
           +HA  +K+ L Y  G I  RL+S+Y       L Y   A+ +FD  + +  LV +N L+ 
Sbjct: 161 IHARVIKS-LNYSDGFIGDRLVSMYF-----KLGYDEDAQRLFDE-MPNRDLVSWNSLMS 213

Query: 96  CYVFNQRSHEALTLFCDL-LDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
                      L  FC +  +    P+  TL  V+   A +GA+ EGK +HG+V KLG  
Sbjct: 214 GLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACAXMGALDEGKSLHGVVVKLGMS 273

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
               V++SL++MY K G +D   ++F+ M  + LVSWN ++  +   G  E  M LF+ M
Sbjct: 274 GKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLM 333

Query: 215 P----DRDLFSWTCLVDGFSKCGKVEIAREIFYRMP----NRNLVSWNAMINGYMKAGDV 266
                + D  +   L+   +  G    A  I   +     N +++   A++N Y K G +
Sbjct: 334 KRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRL 393

Query: 267 DSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326
           +++ ++F++++ RD I W +M+AGY ++    EA++L + M                   
Sbjct: 394 NASEDIFEEIKDRDTIAWTAMLAGYAVHACGREAIKLFDLM------------------- 434

Query: 327 AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS-----KKK 381
                           VK G  VD V  T L+   S  G +E     F  +S     + +
Sbjct: 435 ----------------VKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPR 478

Query: 382 VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFN 441
           + H++ M+  LG  G    A +L      M M+P++  +  +L AC   G V  G+    
Sbjct: 479 LDHYSCMVDLLGRSGRLEDAYELIKS---MPMEPSSGVWGALLGACRVYGNVELGKEVAE 535

Query: 442 MMIN 445
            +++
Sbjct: 536 QLLS 539



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 114/245 (46%), Gaps = 14/245 (5%)

Query: 316 DATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFR 375
           D+ + S + A++    ++    +H+ ++K+    DG +G  L+ MY K G  E A  +F 
Sbjct: 139 DSIVQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFD 198

Query: 376 AISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRM----GMKPTAITFIGVLNACSHAG 431
            +  + +  W +++ GL   G     L+ F   CRM    G +P  +T + V++AC+  G
Sbjct: 199 EMPNRDLVSWNSLMSGLSGRGYLGACLNAF---CRMRTESGRQPNEVTLLSVVSACAXMG 255

Query: 432 LVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSL 491
            +++G+    +++   G+    +    L+++  + G+L+ A    E MP+R + V W S+
Sbjct: 256 ALDEGKSLHGVVVK-LGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVR-SLVSWNSM 313

Query: 492 LSGARNHGNKDIGEYAANNLIKVA---PDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548
           +    ++G  + G     NL+K A   PD     V L       G   +   +   + + 
Sbjct: 314 VVIHNHNGYAEKG-MDLFNLMKRAGINPDQ-ATMVALLRACTDTGLGRQAESIHAYIHRC 371

Query: 549 GFRKD 553
           GF  D
Sbjct: 372 GFNAD 376


>gi|226505202|ref|NP_001141725.1| uncharacterized protein LOC100273856 [Zea mays]
 gi|194705708|gb|ACF86938.1| unknown [Zea mays]
 gi|413956425|gb|AFW89074.1| hypothetical protein ZEAMMB73_742653 [Zea mays]
          Length = 635

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 213/555 (38%), Positives = 314/555 (56%), Gaps = 46/555 (8%)

Query: 179 VFDAMDDKDLVSWNCLID--GYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVE 236
           +  ++   D+ S+N L+   G   +G +  A  LFD MP RD FSW+ +V    + G+  
Sbjct: 83  LLSSLPSTDVCSYNTLVAALGRSPRG-LASARALFDRMPRRDHFSWSAIVSAHVRHGQPR 141

Query: 237 IAREIFYRM---P---------------------------------------NRNLVSWN 254
            A  I+ RM   P                                       + + V W+
Sbjct: 142 AALAIYRRMLREPGGSGADNEFTASSALAAATAARCARAGRELHCHVVRRGIDADAVVWS 201

Query: 255 AMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLP 314
           A+ + Y K G +D A  +FD M +RD+++W +M+  Y   GR  E   L   M+   +LP
Sbjct: 202 ALADMYAKFGRLDDARSVFDRMPVRDVVSWTAMLDRYFDAGRDGEGFRLFVRMMRSGILP 261

Query: 315 NDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVF 374
           N+ T    L A A       G+ +H  + K+        G+ L+ MYSK G + +A+ VF
Sbjct: 262 NEFTYAGVLRACAEFTSEKLGKQVHGRMAKSRTGDSCFAGSALVHMYSKYGDMGTAMRVF 321

Query: 375 RAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVN 434
           R + K  +  WTAMI G   +G   +AL  F+ +   G +P  +TF+GVL+AC+HAGLV+
Sbjct: 322 RGMPKPDLVSWTAMISGYAQNGQPDEALHCFDMLLSSGFRPDHVTFVGVLSACAHAGLVD 381

Query: 435 DGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG 494
            G   F+ + + YGIE T +HY C++D+L R+G  E A+  I +MP++PN  +W SLL G
Sbjct: 382 KGLGIFHSIKDKYGIEHTADHYACVIDLLSRSGLFERAEDMINTMPVKPNKFLWASLLGG 441

Query: 495 ARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDP 554
            R H N  +  +AA  L ++ P+    YV L+NIYA+ G +D+V  +R  M+ RG  K P
Sbjct: 442 CRIHKNVRLAWWAAEALFEIEPENPATYVTLANIYASVGLFDEVENMRRTMELRGITKMP 501

Query: 555 GSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEK 614
            SS IE    +H F+VGDKSHPQ +EI++ L ++  K++  G+V DT  VL  +ED+ +K
Sbjct: 502 ASSWIEVGTRVHVFLVGDKSHPQAEEIYALLKKLYVKMREEGYVADTGFVLHDVEDE-QK 560

Query: 615 EAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSR 674
           + ++  HSERLA+AFG+I     SPI++ KNLR+C DCH+  KL+S I  REIIVRD++R
Sbjct: 561 QQDIGYHSERLAVAFGIIATPKGSPIKVFKNLRICGDCHTTIKLISKIVQREIIVRDSNR 620

Query: 675 FHHFKNGSCSCKDFW 689
           FHHFKNGSCSC+D+W
Sbjct: 621 FHHFKNGSCSCRDYW 635



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 104/393 (26%), Positives = 180/393 (45%), Gaps = 22/393 (5%)

Query: 20  PSRLHWN-ILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIF 78
           PS L  N IL   S+H  T    AL++ ++L      S   L   +      L  AR++F
Sbjct: 58  PSTLLSNRILHLLSSHPATLP-DALALLSSLPSTDVCSYNTLVAALGRSPRGLASARALF 116

Query: 79  DRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLP------DNFTLPCVIKGA 132
           DR+ +      ++ ++  +V + +   AL ++  +L     P      + FT    +  A
Sbjct: 117 DRMPRRDHFS-WSAIVSAHVRHGQPRAALAIYRRMLRE---PGGSGADNEFTASSALAAA 172

Query: 133 ARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWN 192
                 + G+++H  V + G   D  V S+L  MYAKFG +D  R VFD M  +D+VSW 
Sbjct: 173 TAARCARAGRELHCHVVRRGIDADAVVWSALADMYAKFGRLDDARSVFDRMPVRDVVSWT 232

Query: 193 CLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNR 248
            ++D Y   G      +LF  M    +    F++  ++   ++    ++ +++  RM   
Sbjct: 233 AMLDRYFDAGRDGEGFRLFVRMMRSGILPNEFTYAGVLRACAEFTSEKLGKQVHGRMAKS 292

Query: 249 ----NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELL 304
               +  + +A+++ Y K GD+ +A  +F  M   DL++W +MI+GY  NG+  EAL   
Sbjct: 293 RTGDSCFAGSALVHMYSKYGDMGTAMRVFRGMPKPDLVSWTAMISGYAQNGQPDEALHCF 352

Query: 305 ETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWM-HSYIVKNGFVVDGVLGTLLIQMYSK 363
           + +L     P+  T V  LSA A   +++KG  + HS   K G          +I + S+
Sbjct: 353 DMLLSSGFRPDHVTFVGVLSACAHAGLVDKGLGIFHSIKDKYGIEHTADHYACVIDLLSR 412

Query: 364 CGSIESALTVFRAISKKKVGH-WTAMIVGLGMH 395
            G  E A  +   +  K     W +++ G  +H
Sbjct: 413 SGLFERAEDMINTMPVKPNKFLWASLLGGCRIH 445



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 146/310 (47%), Gaps = 20/310 (6%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           ++LH   V+  +   + + S L  +Y       L  ARS+FDR+     +V +  ++  Y
Sbjct: 182 RELHCHVVRRGIDADAVVWSALADMYAK--FGRLDDARSVFDRMPVR-DVVSWTAMLDRY 238

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
               R  E   LF  ++   +LP+ FT   V++  A   + K GKQ+HG + K   G   
Sbjct: 239 FDAGRDGEGFRLFVRMMRSGILPNEFTYAGVLRACAEFTSEKLGKQVHGRMAKSRTGDSC 298

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM--- 214
           F  S+LV MY+K+G++    RVF  M   DLVSW  +I GY + G+ + A+  FD +   
Sbjct: 299 FAGSALVHMYSKYGDMGTAMRVFRGMPKPDLVSWTAMISGYAQNGQPDEALHCFDMLLSS 358

Query: 215 ---PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNA-----MINGYMKAGDV 266
              PD   F    ++   +  G V+    IF+ + ++  +   A     +I+   ++G  
Sbjct: 359 GFRPDHVTF--VGVLSACAHAGLVDKGLGIFHSIKDKYGIEHTADHYACVIDLLSRSGLF 416

Query: 267 DSACELFDDMEIR-DLITWNSMIAGYELNGRFMEALELLETMLIGDVLP-NDATLVSALS 324
           + A ++ + M ++ +   W S++ G  ++     A    E +   ++ P N AT V+  +
Sbjct: 417 ERAEDMINTMPVKPNKFLWASLLGGCRIHKNVRLAWWAAEALF--EIEPENPATYVTLAN 474

Query: 325 AVAGLAVLNK 334
             A + + ++
Sbjct: 475 IYASVGLFDE 484


>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
 gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
          Length = 1175

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 218/618 (35%), Positives = 347/618 (56%), Gaps = 12/618 (1%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYV 98
           QLH+   K  +     +   LL LYV     ++  A  IF+      ++VL+NL++  + 
Sbjct: 265 QLHSYLFKAGISSDYIMEGSLLDLYVK--CGDVETALVIFNSS-DRTNVVLWNLMLVAFG 321

Query: 99  FNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKF 158
                 ++  LFC +    + P+ FT PC+++       I  G+QIH L  K GF  D +
Sbjct: 322 QINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMY 381

Query: 159 VLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRD 218
           V   L+ MY+K+G ++  RRV + + +KD+VSW  +I GYV+    + A+  F EM    
Sbjct: 382 VSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCG 441

Query: 219 LFSWTC-LVDGFSKCGKVEIARE-------IFYRMPNRNLVSWNAMINGYMKAGDVDSAC 270
           ++     L    S C  +   R+       I+    + ++  WNA++N Y + G +  A 
Sbjct: 442 IWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAF 501

Query: 271 ELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLA 330
             F+++E +D ITWN +++G+  +G   EAL++   M    V  N  T VSALSA A LA
Sbjct: 502 SSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLA 561

Query: 331 VLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIV 390
            + +G+ +H+ ++K G   +  +G  LI +Y KCGS E A   F  +S++    W  +I 
Sbjct: 562 EIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIIT 621

Query: 391 GLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIE 450
               HG   +ALDLF++M + G+KP  +TFIGVL ACSH GLV +G  YF  M ++YGI 
Sbjct: 622 SCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIR 681

Query: 451 PTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANN 510
           P  +HY C++DI  R G L+ AK  IE MP+  + ++W +LLS  + H N ++GE+AA +
Sbjct: 682 PRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKH 741

Query: 511 LIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVV 570
           L+++ P     YV+LSN YA   +W    +VR+MM+ RG RK+PG S IE + V+H F V
Sbjct: 742 LLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKNVVHAFFV 801

Query: 571 GDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFG 630
           GD+ HP  ++I++ L+ + +++   G+  +   +    E +     +L  HSE+LA+ FG
Sbjct: 802 GDRLHPLAEQIYNFLAVINDRVAKVGYKQEKYHLFHDKEQEGRDPTDL-VHSEKLAVTFG 860

Query: 631 LINVKSRSPIRIVKNLRV 648
           L+++    P+R++KNLRV
Sbjct: 861 LMSLPPCMPLRVIKNLRV 878



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 112/394 (28%), Positives = 191/394 (48%), Gaps = 12/394 (3%)

Query: 143 QIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKG 202
           +IH      G G  + V + L+ +Y+K G +   RRVF+ +  +D VSW  ++ GY + G
Sbjct: 63  EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNG 122

Query: 203 EVEVAMKLFDEMPDRDLFSWTCLVDG-FSKCGKVEI---AREIFYRMPNRNLVS----WN 254
             E A+ L+ +M    +     ++    S C K E+    R I  +       S     N
Sbjct: 123 LGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGN 182

Query: 255 AMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLP 314
           A+I  Y++ G    A  +F DM  RD +T+N++I+G+   G    ALE+ E M    + P
Sbjct: 183 AVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSP 242

Query: 315 NDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVF 374
           +  T+ S L+A A L  L KG  +HSY+ K G   D ++   L+ +Y KCG +E+AL +F
Sbjct: 243 DCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIF 302

Query: 375 RAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVN 434
            +  +  V  W  M+V  G      ++ +LF +M   G++P   T+  +L  C+    ++
Sbjct: 303 NSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREID 362

Query: 435 DGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG 494
            G +  ++ +   G E  +   G L+D+  + G+LE+A+  +E M    + V W S+++G
Sbjct: 363 LGEQIHSLSVKT-GFESDMYVSGVLIDMYSKYGWLEKARRVLE-MLKEKDVVSWTSMIAG 420

Query: 495 ARNHG--NKDIGEYAANNLIKVAPDTIGCYVVLS 526
              H      +  +       + PD IG    +S
Sbjct: 421 YVQHECCKDALAAFKEMQKCGIWPDNIGLASAIS 454



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 118/470 (25%), Positives = 222/470 (47%), Gaps = 15/470 (3%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYV 98
           ++HA +V   L  +  + + L+ LY    +  +  AR +F+ +    + V +  ++  Y 
Sbjct: 63  EIHAKAVTRGLGKYRIVGNLLIDLYSKNGL--VLPARRVFEELSARDN-VSWVAMLSGYA 119

Query: 99  FNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKF 158
            N    EAL L+  +    ++P  + L  V+    +     +G+ IH   +K GF  + F
Sbjct: 120 QNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIF 179

Query: 159 VLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP--- 215
           V ++++++Y + G   L  RVF  M  +D V++N LI G+ + G  E A+++F+EM    
Sbjct: 180 VGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSG 239

Query: 216 -DRDLFSWTCLVDGFSKCGKVEIARE----IFYRMPNRNLVSWNAMINGYMKAGDVDSAC 270
              D  + + L+   +  G ++   +    +F    + + +   ++++ Y+K GDV++A 
Sbjct: 240 LSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETAL 299

Query: 271 ELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLA 330
            +F+  +  +++ WN M+  +       ++ EL   M    + PN  T    L       
Sbjct: 300 VIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTR 359

Query: 331 VLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIV 390
            ++ G  +HS  VK GF  D  +  +LI MYSK G +E A  V   + +K V  WT+MI 
Sbjct: 360 EIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIA 419

Query: 391 GLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR-YFNMMINDYGI 449
           G   H     AL  F +M + G+ P  I     ++ C+    +  G + +  + ++ Y  
Sbjct: 420 GYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSG 479

Query: 450 EPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
           + +I  +  LV++  R G + EA S+ E +  +   + W  L+SG    G
Sbjct: 480 DVSI--WNALVNLYARCGRIREAFSSFEEIEHKDE-ITWNGLVSGFAQSG 526



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 159/306 (51%), Gaps = 11/306 (3%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +Q+H+LSVKT       +S  L+ +Y       L  AR + + +L+   +V +  +I  Y
Sbjct: 365 EQIHSLSVKTGFESDMYVSGVLIDMY--SKYGWLEKARRVLE-MLKEKDVVSWTSMIAGY 421

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
           V ++   +AL  F ++    + PDN  L   I G A + A+++G QIH  ++  G+  D 
Sbjct: 422 VQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDV 481

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD- 216
            + ++LV++YA+ G I      F+ ++ KD ++WN L+ G+ + G  E A+K+F  M   
Sbjct: 482 SIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQS 541

Query: 217 ---RDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR----NLVSWNAMINGYMKAGDVDSA 269
               ++F++   +   +   +++  ++I  R+            NA+I+ Y K G  + A
Sbjct: 542 GVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDA 601

Query: 270 CELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGL 329
              F +M  R+ ++WN++I     +GR +EAL+L + M    + PND T +  L+A + +
Sbjct: 602 KMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHV 661

Query: 330 AVLNKG 335
            ++ +G
Sbjct: 662 GLVEEG 667



 Score = 44.7 bits (104), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 42/201 (20%), Positives = 88/201 (43%), Gaps = 8/201 (3%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           K+ +Q+HA  +KT   + + + + L+SLY      +   A+  F  + +    V +N +I
Sbjct: 564 KQGKQIHARVIKTGHSFETEVGNALISLY--GKCGSFEDAKMEFSEMSERNE-VSWNTII 620

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEG-KQIHGLVFKLGF 153
                + R  EAL LF  +    + P++ T   V+   + +G ++EG      +  + G 
Sbjct: 621 TSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGI 680

Query: 154 GFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD-DKDLVSWNCLIDGYVKKGEVEV---AMK 209
                  + ++ ++ + G++D  ++  + M    D + W  L+        +EV   A K
Sbjct: 681 RPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAK 740

Query: 210 LFDEMPDRDLFSWTCLVDGFS 230
              E+   D  S+  L + ++
Sbjct: 741 HLLELEPHDSASYVLLSNAYA 761


>gi|414883628|tpg|DAA59642.1| TPA: hypothetical protein ZEAMMB73_113196, partial [Zea mays]
          Length = 635

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 200/455 (43%), Positives = 295/455 (64%), Gaps = 2/455 (0%)

Query: 218 DLFSWTCLVDGFSKCGKVEIAREIFYRMP-NRNLVSWNAMINGYMKAGDVDSACELFDDM 276
           DL+     +  +  CG V   R++F  +P  R++V+WNA++ GY++AG V  A E+FD M
Sbjct: 166 DLYVRNAQIHFYGVCGDVAAMRKVFDELPIVRDVVTWNAVLAGYVRAGMVGVAREVFDGM 225

Query: 277 EIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGR 336
            +RD ++W+++I GY   G    AL + + M+   V  N+A +V+ALSA A L +L +G+
Sbjct: 226 PVRDEVSWSTVIGGYVKEGEPEVALGVFKNMVAQGVKANEAAIVTALSAAAQLGLLEQGK 285

Query: 337 WMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHG 396
           ++H  + + G  +   LG  LI MYSKCGS+ +A  VF A+ ++ V  W +MI GL  HG
Sbjct: 286 FVHEVVKRVGMTMSVNLGAALIDMYSKCGSVAAAKEVFDAMPRRDVFAWNSMICGLATHG 345

Query: 397 MATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHY 456
           +   A+ LF K    G  PT+ITF+GVLNACS  GLV++GRRYF +M   Y IE  +EHY
Sbjct: 346 LGHDAVQLFEKFVSEGFCPTSITFVGVLNACSRTGLVDEGRRYFKLMAEKYDIESEMEHY 405

Query: 457 GCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAP 516
           GC+VD+L R G ++EA   IE M + P+ V+W ++LS  + HG  D+G    N LI++ P
Sbjct: 406 GCMVDLLSRAGLVQEAVELIEGMRIPPDPVLWGTILSACKRHGLVDLGITVGNKLIELDP 465

Query: 517 DTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHP 576
              G YV+L++IYA A +WD+V +VR++M  RG  K  G S +E  G++H+F+VGD +H 
Sbjct: 466 AHDGYYVLLASIYAKAKKWDEVRKVRKLMSNRGTSKSAGWSLMEAHGIVHKFLVGDMNHK 525

Query: 577 QTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKS 636
            +  I++ L  +  +L  AG+VPD + VL  I D+ EK   ++ HSERLAIA+G I V++
Sbjct: 526 DSARIYNMLCTINRRLAEAGYVPDVSSVLHDIGDE-EKVHAIKVHSERLAIAYGFIVVEA 584

Query: 637 RSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRD 671
            SPIRIVKNL VC DCH  +K+++ ++ REI+VRD
Sbjct: 585 GSPIRIVKNLSVCGDCHEFSKMVTKVFGREIVVRD 619



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 100/383 (26%), Positives = 167/383 (43%), Gaps = 77/383 (20%)

Query: 141 GKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD-DKDLVSWNCLIDGYV 199
           G  +H L  K G   D +V ++ +  Y   G++   R+VFD +   +D+V+WN ++ GYV
Sbjct: 151 GTHVHALAVKAGAAGDLYVRNAQIHFYGVCGDVAAMRKVFDELPIVRDVVTWNAVLAGYV 210

Query: 200 KKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNL--------- 250
           + G V VA ++FD MP RD  SW+ ++ G+ K G+ E+A  +F  M  + +         
Sbjct: 211 RAGMVGVAREVFDGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNMVAQGVKANEAAIVT 270

Query: 251 ---------------------------VSWN---AMINGYMKAGDVDSACELFDDMEIRD 280
                                      +S N   A+I+ Y K G V +A E+FD M  RD
Sbjct: 271 ALSAAAQLGLLEQGKFVHEVVKRVGMTMSVNLGAALIDMYSKCGSVAAAKEVFDAMPRRD 330

Query: 281 LITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHS 340
           +  WNSMI G   +G   +A++L E  +     P   T V  L+A +   ++++GR    
Sbjct: 331 VFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCPTSITFVGVLNACSRTGLVDEGRRYFK 390

Query: 341 YIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQ 400
                          L+ + Y     IES +            H+  M+  L   G+  +
Sbjct: 391 ---------------LMAEKY----DIESEME-----------HYGCMVDLLSRAGLVQE 420

Query: 401 ALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIE-HYGCL 459
           A++L      M + P  + +  +L+AC   GLV+ G    N +I    ++P  + +Y  L
Sbjct: 421 AVELIEG---MRIPPDPVLWGTILSACKRHGLVDLGITVGNKLIE---LDPAHDGYYVLL 474

Query: 460 VDILCRTGYLEEAKSTIESMPMR 482
             I  +    +E +   + M  R
Sbjct: 475 ASIYAKAKKWDEVRKVRKLMSNR 497



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 115/232 (49%), Gaps = 11/232 (4%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           AR +FD +      V ++ +I  YV       AL +F +++ + +  +   +   +  AA
Sbjct: 218 AREVFDGMPVRDE-VSWSTVIGGYVKEGEPEVALGVFKNMVAQGVKANEAAIVTALSAAA 276

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
           +LG +++GK +H +V ++G      + ++L+ MY+K G +   + VFDAM  +D+ +WN 
Sbjct: 277 QLGLLEQGKFVHEVVKRVGMTMSVNLGAALIDMYSKCGSVAAAKEVFDAMPRRDVFAWNS 336

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNR- 248
           +I G    G    A++LF++           ++  +++  S+ G V+  R  F  M  + 
Sbjct: 337 MICGLATHGLGHDAVQLFEKFVSEGFCPTSITFVGVLNACSRTGLVDEGRRYFKLMAEKY 396

Query: 249 ----NLVSWNAMINGYMKAGDVDSACELFDDMEI-RDLITWNSMIAGYELNG 295
                +  +  M++   +AG V  A EL + M I  D + W ++++  + +G
Sbjct: 397 DIESEMEHYGCMVDLLSRAGLVQEAVELIEGMRIPPDPVLWGTILSACKRHG 448


>gi|357126882|ref|XP_003565116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Brachypodium distachyon]
          Length = 796

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 234/673 (34%), Positives = 375/673 (55%), Gaps = 25/673 (3%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           KE + +HAL+V   L     +S+ L+S+Y      ++  AR +FD + +    V +N L+
Sbjct: 131 KEGKVVHALAVLEGLAEGVFVSNSLVSMYA--RCGDMGEARRVFD-VTEERDDVSWNSLV 187

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIK----GAARLGAIKEGKQIHGLVFK 150
             Y+      E L +F  +    +  ++F L  VIK    G   +  I E   +HG V K
Sbjct: 188 SGYLRVGAHEEMLRVFALMRRCAMGLNSFALGSVIKCCSGGDGSVRGIAEA--VHGCVVK 245

Query: 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGY------VKKGEV 204
            G   D F+ S++V MYAK G +     +F ++ D ++V +N +I G       V K  V
Sbjct: 246 AGLDTDLFLASAMVDMYAKRGALSEAVALFKSVLDPNVVVFNAMIAGLCRDEAAVHKEVV 305

Query: 205 EVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS----WNAM 256
             A+ L+ E+  R +    F+++ ++   +  G +E  ++I  ++            +A+
Sbjct: 306 REALSLYSELQSRGMEPTEFTFSSVIRACNLAGDIEFGKQIHGQVLKHCFQGDDFIGSAL 365

Query: 257 INGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPND 316
           I+ Y  +  ++     F  +  +D++TW +MI+G   N  F  AL L   +L   + P+ 
Sbjct: 366 IDLYFNSACMEDGFRCFRSVPKQDVVTWTAMISGCVQNELFERALALFHELLGVGLKPDP 425

Query: 317 ATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRA 376
            T+ S ++A A LAV+  G  M  +  K+GF     +G   I MY++ G++E+A+  F+ 
Sbjct: 426 FTISSVMNACASLAVVRTGEQMQCFATKSGFDRFTAMGNSCIHMYARSGNVEAAIQRFQE 485

Query: 377 ISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDG 436
           +    V  W+A+I     HG A QAL  FN+M    + P  ITF+GVL ACSH GLV++G
Sbjct: 486 MESHDVVSWSAIISSHAQHGCARQALQFFNEMVGAKVVPNEITFLGVLTACSHGGLVDEG 545

Query: 437 RRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGAR 496
            RY+ +M  +YG+ PT++H  C+VD+L R G L +A++ I         V+W SLL   R
Sbjct: 546 LRYYEIMKMEYGLCPTVKHCTCVVDLLGRAGRLADAEAFIRDSIFHDEPVVWQSLLGSCR 605

Query: 497 NHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGS 556
            H + + G+  A+ ++++ P + GCYV L N+Y  AG+    S++R++MK+RG +K+PG 
Sbjct: 606 IHRDMERGQLVADRIMELQPASSGCYVNLYNMYLDAGELSLGSKIRDLMKERGVKKEPGL 665

Query: 557 SSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEA 616
           S IE R  +H FV GDKSHP+ + I++KL+EM +K+         T  +  +E    ++ 
Sbjct: 666 SWIELRSGIHSFVAGDKSHPECNAIYTKLAEMLSKIDKL--TTTDTSCIEWVETTGREQN 723

Query: 617 ELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFH 676
            +  HSE+LA+A G+I++   +PIR++KNLRVC DCHS  KL+S    REII+RD  RFH
Sbjct: 724 WMNCHSEKLAVALGIIHLPQSAPIRVMKNLRVCRDCHSTMKLISKSECREIILRDVIRFH 783

Query: 677 HFKNGSCSCKDFW 689
           HF++GSCSC D+W
Sbjct: 784 HFRDGSCSCGDYW 796



 Score =  168 bits (426), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 139/507 (27%), Positives = 231/507 (45%), Gaps = 23/507 (4%)

Query: 59  LLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRF- 117
           LL+ Y      + H AR + D + +  + V +NLLI  Y    ++ E+L  F        
Sbjct: 51  LLAAYCRLGAGDTHQARRLLDEMPRRNA-VSFNLLIDAYSRAGQTEESLETFLHAHRAAE 109

Query: 118 LLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGR 177
           +  D FT    +   +R G +KEGK +H L    G     FV +SLVSMYA+ G++   R
Sbjct: 110 VKADRFTYAAALAACSRAGRLKEGKVVHALAVLEGLAEGVFVSNSLVSMYARCGDMGEAR 169

Query: 178 RVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKC----- 232
           RVFD  +++D VSWN L+ GY++ G  E  +++F  M    +   +  +    KC     
Sbjct: 170 RVFDVTEERDDVSWNSLVSGYLRVGAHEEMLRVFALMRRCAMGLNSFALGSVIKCCSGGD 229

Query: 233 GKVEIAREIFYRMP-----NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSM 287
           G V    E  +        + +L   +AM++ Y K G +  A  LF  +   +++ +N+M
Sbjct: 230 GSVRGIAEAVHGCVVKAGLDTDLFLASAMVDMYAKRGALSEAVALFKSVLDPNVVVFNAM 289

Query: 288 IAGYELNGRFM------EALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSY 341
           IAG   +   +      EAL L   +    + P + T  S + A      +  G+ +H  
Sbjct: 290 IAGLCRDEAAVHKEVVREALSLYSELQSRGMEPTEFTFSSVIRACNLAGDIEFGKQIHGQ 349

Query: 342 IVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQA 401
           ++K+ F  D  +G+ LI +Y     +E     FR++ K+ V  WTAMI G   + +  +A
Sbjct: 350 VLKHCFQGDDFIGSALIDLYFNSACMEDGFRCFRSVPKQDVVTWTAMISGCVQNELFERA 409

Query: 402 LDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVD 461
           L LF+++  +G+KP   T   V+NAC+   +V  G +         G +         + 
Sbjct: 410 LALFHELLGVGLKPDPFTISSVMNACASLAVVRTGEQ-MQCFATKSGFDRFTAMGNSCIH 468

Query: 462 ILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLI--KVAPDTI 519
           +  R+G +E A    + M    + V W +++S    HG         N ++  KV P+ I
Sbjct: 469 MYARSGNVEAAIQRFQEMESH-DVVSWSAIISSHAQHGCARQALQFFNEMVGAKVVPNEI 527

Query: 520 GCYVVLSNIYAAAGQWDKVSEVREMMK 546
               VL+   +  G  D+     E+MK
Sbjct: 528 TFLGVLTAC-SHGGLVDEGLRYYEIMK 553


>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
 gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
          Length = 604

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/568 (36%), Positives = 327/568 (57%), Gaps = 11/568 (1%)

Query: 133 ARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLV---SMYAKFGEIDLGRRVFDAMDDKDLV 189
           ++  ++ E KQI     K     D  VL+ L+   ++      +D    +FD + DKD++
Sbjct: 37  SKCTSLNELKQIQAYTIKTNLQSDISVLTKLINFCTLNPTTSYMDHAHHLFDQILDKDII 96

Query: 190 SWNCLIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKCGKVEIAREIFY 243
            +N +  GY +     +A  LF E+      PD   FS        SK  +  +    F 
Sbjct: 97  LFNIMARGYARSNSPYLAFSLFGELLCSGLLPDDYTFSSLLKACASSKALREGMGLHCFA 156

Query: 244 RMP--NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEAL 301
                N N+     +IN Y +  D+++A  +FD+ME   ++++N++I GY  + +  EAL
Sbjct: 157 VKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEAL 216

Query: 302 ELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMY 361
            L   +   ++ P D T++S + + A L  L+ G+W+H Y+ K GF     + T LI M+
Sbjct: 217 SLFRELQASNIEPTDVTMLSVIMSCALLGALDLGKWIHEYVKKKGFDKYVKVNTALIDMF 276

Query: 362 SKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFI 421
           +KCGS+  A+++F  +  +    W+AMIV    HG   +A+ +F +M R G++P  ITF+
Sbjct: 277 AKCGSLTDAISIFEGMRVRDTQAWSAMIVAFATHGDGLKAISMFEEMKREGVRPDEITFL 336

Query: 422 GVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPM 481
           G+L ACSHAGLV  GR YF  M   YGI P I+HYGC+VD+L R G+L+EA + ++ + +
Sbjct: 337 GLLYACSHAGLVEQGRGYFYSMSKTYGITPGIKHYGCMVDLLGRAGHLDEAYNFVDKLEI 396

Query: 482 RPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEV 541
           +   ++W +LLS    HGN ++ +     + ++     G YV+LSN+YA  G+W+ V+ +
Sbjct: 397 KATPILWRTLLSACSTHGNVEMAKRVIERIFELDDAHGGDYVILSNLYARVGRWEDVNHL 456

Query: 542 REMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDT 601
           R++MK RG  K PG SS+E   V+HEF  GD  H  + E+   L E+  ++K  G+VPDT
Sbjct: 457 RKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHCVSVELRRALDELMKEIKLVGYVPDT 516

Query: 602 TQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSG 661
           + V     +++ KE  L  HSE+LA+AFGL+N    + IR+ KNLR+C DCH+  KL+S 
Sbjct: 517 SLVYHADMEEEGKELVLRYHSEKLAMAFGLLNTPPGTTIRVAKNLRICGDCHNAAKLISF 576

Query: 662 IYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           I+ R+I++RD  RFH F++G CSC DFW
Sbjct: 577 IFGRKIVIRDVQRFHRFEDGKCSCGDFW 604



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 105/444 (23%), Positives = 214/444 (48%), Gaps = 44/444 (9%)

Query: 5   TLQHSSPIHALQQHLPSRLH-WNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSL- 62
           TL   S   +  + + ++LH  ++L   ++  E +Q+ A ++KTNL     + ++L++  
Sbjct: 12  TLTKPSSAFSKNEFVINQLHPLSLLSKCTSLNELKQIQAYTIKTNLQSDISVLTKLINFC 71

Query: 63  YVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDN 122
            ++P  + + +A  +FD+IL    ++L+N++ + Y  +   + A +LF +LL   LLPD+
Sbjct: 72  TLNPTTSYMDHAHHLFDQILD-KDIILFNIMARGYARSNSPYLAFSLFGELLCSGLLPDD 130

Query: 123 FTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDA 182
           +T   ++K  A   A++EG  +H    KLG   + ++  +L++MYA+  +++  R VFD 
Sbjct: 131 YTFSSLLKACASSKALREGMGLHCFAVKLGLNHNIYICPTLINMYAECNDMNAARGVFDE 190

Query: 183 MDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIA 238
           M+   +VS+N +I GY +  +   A+ LF E+   ++     +   ++   +  G +++ 
Sbjct: 191 MEQPCIVSYNAIITGYARSSQPNEALSLFRELQASNIEPTDVTMLSVIMSCALLGALDLG 250

Query: 239 REIFYRMPNRNLVSW----NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELN 294
           + I   +  +    +     A+I+ + K G +  A  +F+ M +RD   W++MI  +  +
Sbjct: 251 KWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMRVRDTQAWSAMIVAFATH 310

Query: 295 GRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLG 354
           G  ++A+ + E M    V P++ T +  L A +   ++ +GR     + K   +  G   
Sbjct: 311 GDGLKAISMFEEMKREGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKTYGITPG--- 367

Query: 355 TLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMK 414
                                      + H+  M+  LG  G   +A +  +K   + +K
Sbjct: 368 ---------------------------IKHYGCMVDLLGRAGHLDEAYNFVDK---LEIK 397

Query: 415 PTAITFIGVLNACSHAGLVNDGRR 438
            T I +  +L+ACS  G V   +R
Sbjct: 398 ATPILWRTLLSACSTHGNVEMAKR 421


>gi|147771387|emb|CAN76239.1| hypothetical protein VITISV_016538 [Vitis vinifera]
          Length = 503

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 192/436 (44%), Positives = 287/436 (65%), Gaps = 1/436 (0%)

Query: 254 NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL 313
           + +++ Y+K GD+ +A  +F+ +   D + W SMI+G   NG   +AL +   M    V+
Sbjct: 69  SGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVM 128

Query: 314 PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTV 373
           P++ T  + + A + +  L +GR +H+ ++K   V D  +GT L+ MY+KCG+IE A  +
Sbjct: 129 PDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRL 188

Query: 374 FRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLV 433
           F+ ++ + +  W AM+VGL  HG A +A++LF  M   G++P  ++FIG+L+ACSHAGL 
Sbjct: 189 FKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLT 248

Query: 434 NDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLS 493
           ++   Y + M NDYGIEP IEHY CLVD L R G ++EA   IE+MP + +  I  +LL 
Sbjct: 249 SEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLG 308

Query: 494 GARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKD 553
             R  G+ + G+  A  L  + P     YV+LSNIYAAA +WD V++ R+MMK++  +KD
Sbjct: 309 ACRIQGDVEXGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKD 368

Query: 554 PGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKE 613
           PG S I+ + +LH FVV D+SHPQ D I+ K+ EM   ++  G+VPDT  VLL +ED+ E
Sbjct: 369 PGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEFVLLDVEDE-E 427

Query: 614 KEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNS 673
           KE  L  HSE+LAIA+GLI+  + + IR++KNLRVC DCH+  K +S ++ REI++RD +
Sbjct: 428 KERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCGDCHNAIKYISKVFEREIVLRDAN 487

Query: 674 RFHHFKNGSCSCKDFW 689
           RFHHF++G CSC D+W
Sbjct: 488 RFHHFRDGVCSCGDYW 503



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 84/364 (23%), Positives = 156/364 (42%), Gaps = 46/364 (12%)

Query: 97  YVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFD 156
           Y+      +AL LF  +       D  TL    K    L  + +GKQIH    K GF  D
Sbjct: 5   YIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSD 64

Query: 157 KFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD 216
             V S ++ MY K G++     VF+ +   D V+W  +I G V  G  + A++++  M  
Sbjct: 65  LHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQ 124

Query: 217 R----DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS----WNAMINGYMKAGDVDS 268
                D +++  L+   S    +E  R++   +   + VS      ++++ Y K G+++ 
Sbjct: 125 SRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIED 184

Query: 269 ACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAG 328
           A  LF  M +R++  WN+M+ G   +G   EA+ L ++M    + P+  + +  LSA + 
Sbjct: 185 AYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSH 244

Query: 329 LAVLNKG-RWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTA 387
             + ++   ++HS  + N + ++                              ++ H++ 
Sbjct: 245 AGLTSEAYEYLHS--MPNDYGIE-----------------------------PEIEHYSC 273

Query: 388 MIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDY 447
           ++  LG  G+  +A  +      M  K +A     +L AC   G V  G+R    +   +
Sbjct: 274 LVDALGRAGLVQEADKVIET---MPFKASASINRALLGACRIQGDVEXGKRVAARL---F 327

Query: 448 GIEP 451
            +EP
Sbjct: 328 ALEP 331



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 131/266 (49%), Gaps = 16/266 (6%)

Query: 36  ETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIK 95
           + +Q+HA ++K        ++S +L +Y+     ++  A  +F+ I   P  V +  +I 
Sbjct: 48  QGKQIHAHAIKAGFDSDLHVNSGILDMYI--KCGDMVNAGIVFNYI-SAPDDVAWTSMIS 104

Query: 96  CYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF 155
             V N    +AL ++  +    ++PD +T   +IK ++ + A+++G+Q+H  V KL    
Sbjct: 105 GCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVS 164

Query: 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM- 214
           D FV +SLV MYAK G I+   R+F  M+ +++  WN ++ G  + G  E A+ LF  M 
Sbjct: 165 DPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMK 224

Query: 215 -----PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR-----NLVSWNAMINGYMKAG 264
                PDR   S+  ++   S  G    A E  + MPN       +  ++ +++   +AG
Sbjct: 225 SHGIEPDR--VSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAG 282

Query: 265 DVDSACELFDDMEIRDLITWNSMIAG 290
            V  A ++ + M  +   + N  + G
Sbjct: 283 LVQEADKVIETMPFKASASINRALLG 308



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 122/247 (49%), Gaps = 14/247 (5%)

Query: 287 MIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNG 346
           M+ GY +     +ALEL   +       +  TL +A  A   L +L++G+ +H++ +K G
Sbjct: 1   MMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAG 60

Query: 347 FVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFN 406
           F  D  + + ++ MY KCG + +A  VF  IS      WT+MI G   +G   QAL +++
Sbjct: 61  FDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYH 120

Query: 407 KMCRMGMKPTAITFIGVLNACSHAGLVNDGRR-YFNMMINDYGIEPTIEHYGCLVDILCR 465
           +M +  + P   TF  ++ A S    +  GR+ + N++  D   +P +     LVD+  +
Sbjct: 121 RMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVG--TSLVDMYAK 178

Query: 466 TGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIK------VAPDTI 519
            G +E+A    + M +R N  +W ++L G   HGN +     A NL K      + PD +
Sbjct: 179 CGNIEDAYRLFKKMNVR-NIALWNAMLVGLAQHGNAE----EAVNLFKSMKSHGIEPDRV 233

Query: 520 GCYVVLS 526
               +LS
Sbjct: 234 SFIGILS 240


>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 219/611 (35%), Positives = 347/611 (56%), Gaps = 47/611 (7%)

Query: 26  NILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHP 85
           ++L+  ++  + +++HA  + T LI      SRL++        NL Y     D+IL + 
Sbjct: 59  SLLEACTSMAKMKEIHAQMISTGLISDGFALSRLVAFCAISEWRNLDYC----DKILNNA 114

Query: 86  S---LVLYNLLIKCYVFNQRSHEALTLFCDLLDR-FLLPDNFTLPCVIKGAARLGAIKEG 141
           +   +  +N+ I+ YV ++    A+ L+ ++L +   +PDN+T P + K  A        
Sbjct: 115 ANLNVFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTA 174

Query: 142 KQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKK 201
            +I G V +LGF  D FV ++++ +    GE+   R++FD    +DLVSWN +I+GYV+ 
Sbjct: 175 NEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRC 234

Query: 202 GEVEVAMKLF------DEMPD--------------------RDLFS-------------W 222
           G  + A  L+      + MPD                    R L                
Sbjct: 235 GLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLA 294

Query: 223 TCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLI 282
             L+D + KC  +E A+ +F  M  + +VSW  M+ GY K G ++SA  LF++M  +D++
Sbjct: 295 NALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVV 354

Query: 283 TWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYI 342
            WN++I G+    R  EAL L   M    V P+  T+V+ LSA + L  L+ G WMH Y+
Sbjct: 355 LWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYV 414

Query: 343 VKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQAL 402
            K+   ++  LGT L+ MY+KCG+I+ A+ VF  +  +    WTA+I GL +HG    A+
Sbjct: 415 DKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAI 474

Query: 403 DLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDI 462
             F++M  +G+ P  ITFIGVL+AC H GLV+ GR YF  M + YGI P ++HY CLVD+
Sbjct: 475 SYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDL 534

Query: 463 LCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCY 522
           L R G+LEEA+  I SMP  P+ V+W +L  G+R HGN  +GE AA+ L+++ P   G Y
Sbjct: 535 LGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAASKLLELDPHDGGIY 594

Query: 523 VVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIH 582
           V+L+N+Y  A  W++  +VR+MM++RG  K PG SSIE  G++++F++ DKSHPQ+++I+
Sbjct: 595 VLLANMYGDANMWEQARKVRKMMEERGVEKTPGCSSIEMNGLVYDFIIRDKSHPQSEKIY 654

Query: 583 SKLSEMRNKLK 593
             L+ +  +++
Sbjct: 655 ECLTRLTRQIE 665


>gi|297811673|ref|XP_002873720.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319557|gb|EFH49979.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 623

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 228/615 (37%), Positives = 348/615 (56%), Gaps = 56/615 (9%)

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGF--GFDKFVLSSLVSMYAKFGEIDLGRRVFD--AM 183
           +++ +A    +  G+++H ++   G       ++ ++L   YA  GEI   +++FD   +
Sbjct: 12  LLRQSAHRSFLHPGRELHAVLTTSGLKKAPRSYLSNALFQFYASSGEIATAQKLFDEIPL 71

Query: 184 DDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCL-------------- 225
            DKD V W  L+  + + G +  +MKLF EM  +    D  S  CL              
Sbjct: 72  SDKDNVDWTTLLSSFSRFGLLVNSMKLFVEMRRKRVEIDHVSLVCLFGVCAKLEDLRFGE 131

Query: 226 ---------------------VDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAG 264
                                +D + KCG V   + IF  +  +++VSW  +++  +K  
Sbjct: 132 QGHGVAVKMGFLTSVKVCNALMDMYGKCGFVSEVKRIFQALEEKSVVSWTVVLDTLVKWE 191

Query: 265 DVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLI--GDVLPNDATLVSA 322
            +    E+FD+M  R+++ W  M+AGY   G   E LELL  M+   G  L N  TL S 
Sbjct: 192 GLKRGREVFDEMPERNVVAWTLMVAGYLGAGFTREVLELLAEMVFRCGHGL-NFVTLCSM 250

Query: 323 LSAVAGLAVLNKGRWMHSYIVKNGFVV------DGVL-GTLLIQMYSKCGSIESALTVFR 375
           LSA A    L  GRW+H Y +K   ++      DGV+ GT L+ MY+KCG+I+S++ VFR
Sbjct: 251 LSACAQSGNLVIGRWVHVYALKKAMMMGEEETYDGVMVGTALVDMYAKCGNIDSSIKVFR 310

Query: 376 AISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVND 435
            + K+ V  W A+  GL MHG     +D+F +M R  +KP  +TF  +L+ACSH G+V++
Sbjct: 311 LMRKRNVVTWNALFSGLAMHGKGRMVIDMFPEMVR-EVKPDDLTFTALLSACSHLGMVDE 369

Query: 436 GRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGA 495
           G R F+ +   YG+EP ++HY C+VDIL R G +EEA+  +  MP+ PN V+  SLL   
Sbjct: 370 GWRCFHSL-QFYGLEPKVDHYACMVDILGRAGRIEEAEILMREMPVPPNEVVLGSLLGSC 428

Query: 496 RNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPG 555
             HG  +I E     LI+++P      +++SN+Y A G+ D    +R  ++ RG RK PG
Sbjct: 429 SVHGKLEIAERIKRELIQMSPGHTEYQILMSNMYVAEGRSDIADGLRGSLRNRGIRKIPG 488

Query: 556 SSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIE-DQKEK 614
            SSI     +H F  GD+SHP+T E++ KL+E+  ++++AG+VPD + ++   E D +EK
Sbjct: 489 LSSIYVNDSVHRFSSGDRSHPRTKEVYLKLNEVIERIRSAGYVPDISGLVSPSEGDLEEK 548

Query: 615 EAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSR 674
           E  L  HSE+LA+ FGL+  K R+P+ + KNLR+C DCHS  K++S +Y+REII+RD +R
Sbjct: 549 EQALCCHSEKLAVCFGLLETKPRTPLLVFKNLRICRDCHSAMKIVSKVYDREIIIRDRNR 608

Query: 675 FHHFKNGSCSCKDFW 689
           FH FK GSCSC D+W
Sbjct: 609 FHQFKGGSCSCSDYW 623


>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1274

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 227/648 (35%), Positives = 374/648 (57%), Gaps = 17/648 (2%)

Query: 55  ISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL 114
           +S+ L+ LY+         AR++F ++     +V +N ++  Y  +   H A+    D+ 
Sbjct: 137 VSTALIDLYI--RCARFGPARNVFAKMPMR-DVVAWNAMLAGYANHGMYHHAIAHLLDMQ 193

Query: 115 DRF-LLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK---FVLSSLVSMYAKF 170
           D   L P+  TL  ++   A+ GA+ +G  IH    +     ++    + ++L+ MYAK 
Sbjct: 194 DHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKC 253

Query: 171 GEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL--FSWTCLVDG 228
            ++    RVF  M  ++ V+W+ LI G+V    +  A  LF +M    L   S T +   
Sbjct: 254 KQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASA 313

Query: 229 FSKCGKV-------EIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDL 281
              C  +       ++   I     + +L + N++++ Y KAG ++ A   FD++ ++D 
Sbjct: 314 LRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDT 373

Query: 282 ITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSY 341
           I++ ++++G   NG+  EA  + + M   ++ P+ AT+VS + A + LA L  G+  H  
Sbjct: 374 ISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGS 433

Query: 342 IVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQA 401
           ++  G  ++  +   LI MY+KCG I+ +  VF  +  + V  W  MI G G+HG+  +A
Sbjct: 434 VIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEA 493

Query: 402 LDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVD 461
             LF  M   G  P  +TFI ++ ACSH+GLV +G+ +F+ M + YGI P +EHY C+VD
Sbjct: 494 TTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVD 553

Query: 462 ILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGC 521
           +L R G L+EA   I+SMP++ +  +W +LL   R H N D+G+  +  + K+ P+  G 
Sbjct: 554 LLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTGN 613

Query: 522 YVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEI 581
           +V+LSNI++AAG++D+ +EVR + K +GF+K PG S IE  G LH FV GD+SHP + +I
Sbjct: 614 FVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFVGGDQSHPCSRDI 673

Query: 582 HSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIR 641
           + +L  +   +K  G+  DT+ VL  +E++++++A L  HSE+LAIAFG++++     I 
Sbjct: 674 YHELDNIMVDIKKLGYQADTSFVLQDLEEEEKEKA-LLYHSEKLAIAFGVLSLNEDKTIF 732

Query: 642 IVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           + KNLRVC DCH+  K ++ + NR IIVRD +RFHHFKNG CSC +FW
Sbjct: 733 VTKNLRVCGDCHTAIKYMTLVRNRTIIVRDTNRFHHFKNGQCSCGNFW 780



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 127/262 (48%), Gaps = 13/262 (4%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYV 98
           QLHAL  K+ +      S+ LLS+Y    + N   A   FD I    ++    LL  C V
Sbjct: 328 QLHALIAKSGIHADLTASNSLLSMYAKAGLIN--EATMFFDEIAVKDTISYGALLSGC-V 384

Query: 99  FNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKF 158
            N ++ EA  +F  +    + PD  T+  +I   + L A++ GK  HG V   G   +  
Sbjct: 385 QNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETS 444

Query: 159 VLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR- 217
           + +SL+ MYAK G+IDL R+VFD M  +D+VSWN +I GY   G  + A  LF  M ++ 
Sbjct: 445 ICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQG 504

Query: 218 ---DLFSWTCLVDGFSKCGKVEIAREIFYRMPNR-----NLVSWNAMINGYMKAGDVDSA 269
              D  ++ CL+   S  G V   +  F  M ++      +  +  M++   + G +D A
Sbjct: 505 FAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGLLDEA 564

Query: 270 CELFDDMEIR-DLITWNSMIAG 290
            +    M ++ D+  W +++  
Sbjct: 565 YQFIQSMPLKADVRVWGALLGA 586



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 108/250 (43%), Gaps = 14/250 (5%)

Query: 253 WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDV 312
           W   +  ++  G +  A ++FD +   D   +N++I  Y   G F  A++L  +ML   V
Sbjct: 37  WQQELEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRV 96

Query: 313 LPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALT 372
            PN  T    L A + L  L  GR +H++    G   D  + T LI +Y +C     A  
Sbjct: 97  APNKYTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARN 156

Query: 373 VFRAISKKKVGHWTAMIVGLGMHGMATQAL-DLFNKMCRMGMKPTAITFIGVLNACSHAG 431
           VF  +  + V  W AM+ G   HGM   A+  L +     G++P A T + +L   +  G
Sbjct: 157 VFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHG 216

Query: 432 LVNDGRRYFNMMINDYGIEPTIEHY-------GCLVDILCRTGYLEEAKSTIESMPMRPN 484
            +  G       I+ Y +   +E           L+D+  +   L  A      MP+R N
Sbjct: 217 ALFQG-----TSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVR-N 270

Query: 485 FVIWMSLLSG 494
            V W +L+ G
Sbjct: 271 DVTWSALIGG 280


>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1174

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 227/648 (35%), Positives = 374/648 (57%), Gaps = 17/648 (2%)

Query: 55  ISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL 114
           +S+ L+ LY+         AR++F ++     +V +N ++  Y  +   H A+    D+ 
Sbjct: 137 VSTALIDLYI--RCARFGPARNVFAKMPMR-DVVAWNAMLAGYANHGMYHHAIAHLLDMQ 193

Query: 115 DRF-LLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK---FVLSSLVSMYAKF 170
           D   L P+  TL  ++   A+ GA+ +G  IH    +     ++    + ++L+ MYAK 
Sbjct: 194 DHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKC 253

Query: 171 GEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL--FSWTCLVDG 228
            ++    RVF  M  ++ V+W+ LI G+V    +  A  LF +M    L   S T +   
Sbjct: 254 KQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASA 313

Query: 229 FSKCGKV-------EIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDL 281
              C  +       ++   I     + +L + N++++ Y KAG ++ A   FD++ ++D 
Sbjct: 314 LRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDT 373

Query: 282 ITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSY 341
           I++ ++++G   NG+  EA  + + M   ++ P+ AT+VS + A + LA L  G+  H  
Sbjct: 374 ISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGS 433

Query: 342 IVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQA 401
           ++  G  ++  +   LI MY+KCG I+ +  VF  +  + V  W  MI G G+HG+  +A
Sbjct: 434 VIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEA 493

Query: 402 LDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVD 461
             LF  M   G  P  +TFI ++ ACSH+GLV +G+ +F+ M + YGI P +EHY C+VD
Sbjct: 494 TTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVD 553

Query: 462 ILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGC 521
           +L R G L+EA   I+SMP++ +  +W +LL   R H N D+G+  +  + K+ P+  G 
Sbjct: 554 LLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTGN 613

Query: 522 YVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEI 581
           +V+LSNI++AAG++D+ +EVR + K +GF+K PG S IE  G LH FV GD+SHP + +I
Sbjct: 614 FVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFVGGDQSHPCSRDI 673

Query: 582 HSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIR 641
           + +L  +   +K  G+  DT+ VL  +E++++++A L  HSE+LAIAFG++++     I 
Sbjct: 674 YHELDNIMVDIKKLGYQADTSFVLQDLEEEEKEKA-LLYHSEKLAIAFGVLSLNEDKTIF 732

Query: 642 IVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           + KNLRVC DCH+  K ++ + NR IIVRD +RFHHFKNG CSC +FW
Sbjct: 733 VTKNLRVCGDCHTAIKYMTLVRNRTIIVRDTNRFHHFKNGQCSCGNFW 780



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 127/262 (48%), Gaps = 13/262 (4%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYV 98
           QLHAL  K+ +      S+ LLS+Y    + N   A   FD I    ++    LL  C V
Sbjct: 328 QLHALIAKSGIHADLTASNSLLSMYAKAGLIN--EATMFFDEIAVKDTISYGALLSGC-V 384

Query: 99  FNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKF 158
            N ++ EA  +F  +    + PD  T+  +I   + L A++ GK  HG V   G   +  
Sbjct: 385 QNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETS 444

Query: 159 VLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR- 217
           + +SL+ MYAK G+IDL R+VFD M  +D+VSWN +I GY   G  + A  LF  M ++ 
Sbjct: 445 ICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQG 504

Query: 218 ---DLFSWTCLVDGFSKCGKVEIAREIFYRMPNR-----NLVSWNAMINGYMKAGDVDSA 269
              D  ++ CL+   S  G V   +  F  M ++      +  +  M++   + G +D A
Sbjct: 505 FAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGLLDEA 564

Query: 270 CELFDDMEIR-DLITWNSMIAG 290
            +    M ++ D+  W +++  
Sbjct: 565 YQFIQSMPLKADVRVWGALLGA 586



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 108/250 (43%), Gaps = 14/250 (5%)

Query: 253 WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDV 312
           W   +  ++  G +  A ++FD +   D   +N++I  Y   G F  A++L  +ML   V
Sbjct: 37  WQQELEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRV 96

Query: 313 LPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALT 372
            PN  T    L A + L  L  GR +H++    G   D  + T LI +Y +C     A  
Sbjct: 97  APNKYTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARN 156

Query: 373 VFRAISKKKVGHWTAMIVGLGMHGMATQAL-DLFNKMCRMGMKPTAITFIGVLNACSHAG 431
           VF  +  + V  W AM+ G   HGM   A+  L +     G++P A T + +L   +  G
Sbjct: 157 VFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHG 216

Query: 432 LVNDGRRYFNMMINDYGIEPTIEHY-------GCLVDILCRTGYLEEAKSTIESMPMRPN 484
            +  G       I+ Y +   +E           L+D+  +   L  A      MP+R N
Sbjct: 217 ALFQGTS-----IHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVR-N 270

Query: 485 FVIWMSLLSG 494
            V W +L+ G
Sbjct: 271 DVTWSALIGG 280


>gi|224099171|ref|XP_002311390.1| predicted protein [Populus trichocarpa]
 gi|222851210|gb|EEE88757.1| predicted protein [Populus trichocarpa]
          Length = 594

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 221/592 (37%), Positives = 332/592 (56%), Gaps = 36/592 (6%)

Query: 16  QQHLPSRLHW-NILKFSSTHKETQQLHALSVKTNLIYHSGISSRLL-SLYVDPHINNLHY 73
           +QHL    H  ++L+     K+  QLH L +KT+LI       RLL S     ++ +L+Y
Sbjct: 25  KQHLRKPDHAISLLQNCKNPKDLIQLHTLLIKTSLIKEKYAFGRLLLSFASFDNLGSLNY 84

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL--DRFLLPDNFTLPCVIKG 131
           A+ +FD +    +  +Y  +IK Y       EA   +  +L   R++ P++FT   V   
Sbjct: 85  AQKLFDTVDIPRNSFMYTTMIKAYANFGNPREAFAFYSRMLCDQRYVYPNDFTFTYVFSA 144

Query: 132 AARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSW 191
            ++   + EGKQ H  + K  F F                                + SW
Sbjct: 145 CSKFNGVFEGKQAHAQMIKFPFEFG-------------------------------VHSW 173

Query: 192 NCLIDGYVKKGEVEVAMK-LFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNL 250
           N L+D Y K GEV + ++ +FD++   D+ SW CL++G+ K G ++ AR +F  MP R++
Sbjct: 174 NSLLDFYGKVGEVGIVVRRVFDKIEGPDVVSWNCLINGYVKSGDLDEARRLFDEMPERDV 233

Query: 251 VSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIG 310
           VSW  M+ GY  AG +  A  LFD+M  R+L++W+++I GY   G + +ALEL + M + 
Sbjct: 234 VSWTIMLVGYADAGFLSEASCLFDEMPKRNLVSWSALIKGYIQIGCYSKALELFKEMQVA 293

Query: 311 DVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESA 370
            V  ++  + + LSA A L  L++GRW+H YI K+G  VD  L T LI MYSKCG I+ A
Sbjct: 294 KVKMDEVIVTTLLSACARLGALDQGRWLHMYIDKHGIKVDAHLSTALIDMYSKCGRIDMA 353

Query: 371 LTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHA 430
             VF+    KKV  W++MI GL MH    +A++LF KM   G++P+ IT+I +L AC+H+
Sbjct: 354 WKVFQETGDKKVFVWSSMIGGLAMHSFGEKAIELFAKMIECGIEPSEITYINILAACTHS 413

Query: 431 GLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMS 490
           GLV+ G + FN M+ +   +P ++HYGC+VD+L R G L +A   +E+MP++ +  IW +
Sbjct: 414 GLVDVGLQIFNRMVENQKPKPRMQHYGCIVDLLGRAGLLHDAFRVVETMPVKADPAIWRA 473

Query: 491 LLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGF 550
           LLS  + H N ++GE     LIK+ P     YV+ SN+YAA  +WD   ++R  MK RG 
Sbjct: 474 LLSACKLHRNVELGEQVGRILIKMEPQNDMNYVLFSNVYAAVNRWDISGKLRREMKVRGM 533

Query: 551 RKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTT 602
           +K+PG SSIE  G +HEFV  D SHPQ+  I+  L  + N +    H P  T
Sbjct: 534 QKNPGCSSIELNGAVHEFVSRDHSHPQSQVIYELLHILTNHMVQEDHEPMMT 585


>gi|357121739|ref|XP_003562575.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 770

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 227/672 (33%), Positives = 364/672 (54%), Gaps = 24/672 (3%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           + LH   VKT  I    +++ L+++Y+     N   AR++FD + +  ++V +  LI  Y
Sbjct: 98  KALHGHMVKTGTIVDIFVATSLVNVYM--RCGNSQDARNLFDEMPEK-NVVTWTALITGY 154

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
             N +   AL +F ++L     P ++TL  ++        I  GKQ+HG   K G     
Sbjct: 155 TLNSQPVLALEVFVEMLKLGRYPSDYTLGGMLSACVASHNIDLGKQVHGYTIKYGAASIT 214

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVK-KGEVEVAMKLFDEMPD 216
            + +SL  +Y K G ++ G R F  + DK++++W  +I    + +   E+ + LF +M  
Sbjct: 215 SIGNSLCRLYTKSGNLESGIRAFKRIPDKNVITWTTMISACAEDENYTELGLNLFLDMLK 274

Query: 217 RDLF-SWTCLVDGFSKCGK---VEIAREI----FYRMPNRNLVSWNAMINGYMKAGDVDS 268
            ++  +   L    S CG    + + +++    F      NL   N+ +  Y++ G+ + 
Sbjct: 275 GEVMPNEFTLTSVMSLCGTSLDMNLGKQVQGFCFKIGCATNLPVKNSTMYLYLRKGETEE 334

Query: 269 ACELFDDMEIRDLITWNSMIAGY-----------ELNGRFMEALELLETMLIGDVLPNDA 317
           A  LF++ME   +ITWN+MI+G+               R  +AL++   ++   + P+  
Sbjct: 335 AMRLFEEMEDNSVITWNAMISGFAQIMDSAKDDLHARSRGFQALKIFRDLVRSAMKPDLF 394

Query: 318 TLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAI 377
           T  S LS  + +  L +G  +H+  +K GF+ D V+ + L+ MY+KCG IE A   F  +
Sbjct: 395 TFSSILSVCSTMMALEQGEQIHAQTIKTGFLSDVVVNSALVNMYNKCGCIEYATKAFVEM 454

Query: 378 SKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGR 437
             + +  WT+MI G   HG    A+ LF  M   G KP  ITF+ +L+ACS+AGLV +  
Sbjct: 455 PTRTLVTWTSMISGYSQHGRPHDAIQLFEDMILAGAKPNEITFVSLLSACSYAGLVEEAM 514

Query: 438 RYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARN 497
           RYF+MM N+Y IEP ++HYGC++D+  R G L++A + I+     PN  IW SL++G R+
Sbjct: 515 RYFDMMQNEYHIEPLMDHYGCMIDMFVRLGRLDDAYAFIKRKGFEPNEAIWSSLVAGCRS 574

Query: 498 HGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSS 557
           HGN ++  YAA+ L+++ P  +  YV+L N+Y + G+W  V+ VR++ K          S
Sbjct: 575 HGNMELAFYAADRLLELKPKVVETYVLLLNMYISTGRWRDVARVRKLSKHEDLGILRDRS 634

Query: 558 SIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVP-DTTQVLLCIEDQKEKEA 616
            I  R  ++ F   D+SHPQ+ E++  L  +  K KA G+ P   T++    ED K    
Sbjct: 635 WITIRDKVYFFKADDRSHPQSTELYQLLETLLEKAKAIGYEPYQNTELYDSEEDGKPAAG 694

Query: 617 ELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFH 676
            L++HSERLA+A GL+       +RI KN+ +C DCHS  K  S + NREI+VRD+ R H
Sbjct: 695 SLKHHSERLAVALGLLKAPPGVTVRITKNITMCRDCHSSIKFFSLLANREIVVRDSKRLH 754

Query: 677 HFKNGSCSCKDF 688
            FK+G CSC DF
Sbjct: 755 KFKDGRCSCGDF 766



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 107/385 (27%), Positives = 174/385 (45%), Gaps = 24/385 (6%)

Query: 136 GAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLI 195
           G++   K +HG + K G   D FV +SLV++Y + G     R +FD M +K++V+W  LI
Sbjct: 92  GSLGGAKALHGHMVKTGTIVDIFVATSLVNVYMRCGNSQDARNLFDEMPEKNVVTWTALI 151

Query: 196 DGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDG-FSKC--------GKVEIAREIFYRMP 246
            GY    +  +A+++F EM     +     + G  S C        GK      I Y   
Sbjct: 152 TGYTLNSQPVLALEVFVEMLKLGRYPSDYTLGGMLSACVASHNIDLGKQVHGYTIKYGAA 211

Query: 247 NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFME-ALELLE 305
           +   +  N++   Y K+G+++S    F  +  +++ITW +MI+    +  + E  L L  
Sbjct: 212 SITSIG-NSLCRLYTKSGNLESGIRAFKRIPDKNVITWTTMISACAEDENYTELGLNLFL 270

Query: 306 TMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCG 365
            ML G+V+PN+ TL S +S       +N G+ +  +  K G   +  +    + +Y + G
Sbjct: 271 DMLKGEVMPNEFTLTSVMSLCGTSLDMNLGKQVQGFCFKIGCATNLPVKNSTMYLYLRKG 330

Query: 366 SIESALTVFRAISKKKVGHWTAMIVGLG---------MHGMAT--QALDLFNKMCRMGMK 414
             E A+ +F  +    V  W AMI G           +H  +   QAL +F  + R  MK
Sbjct: 331 ETEEAMRLFEEMEDNSVITWNAMISGFAQIMDSAKDDLHARSRGFQALKIFRDLVRSAMK 390

Query: 415 PTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKS 474
           P   TF  +L+ CS    +  G +     I   G    +     LV++  + G +E A  
Sbjct: 391 PDLFTFSSILSVCSTMMALEQGEQIHAQTIKT-GFLSDVVVNSALVNMYNKCGCIEYATK 449

Query: 475 TIESMPMRPNFVIWMSLLSGARNHG 499
               MP R   V W S++SG   HG
Sbjct: 450 AFVEMPTR-TLVTWTSMISGYSQHG 473



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 85/169 (50%), Gaps = 2/169 (1%)

Query: 332 LNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVG 391
           L   + +H ++VK G +VD  + T L+ +Y +CG+ + A  +F  + +K V  WTA+I G
Sbjct: 94  LGGAKALHGHMVKTGTIVDIFVATSLVNVYMRCGNSQDARNLFDEMPEKNVVTWTALITG 153

Query: 392 LGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP 451
             ++     AL++F +M ++G  P+  T  G+L+AC  +  ++ G++     I  YG   
Sbjct: 154 YTLNSQPVLALEVFVEMLKLGRYPSDYTLGGMLSACVASHNIDLGKQVHGYTIK-YGAAS 212

Query: 452 TIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGN 500
                  L  +  ++G LE      + +P + N + W +++S      N
Sbjct: 213 ITSIGNSLCRLYTKSGNLESGIRAFKRIPDK-NVITWTTMISACAEDEN 260



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 42/200 (21%), Positives = 91/200 (45%), Gaps = 20/200 (10%)

Query: 26  NILKFSSTH---KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRIL 82
           +IL   ST    ++ +Q+HA ++KT  +    ++S L+++Y       + YA   F  + 
Sbjct: 398 SILSVCSTMMALEQGEQIHAQTIKTGFLSDVVVNSALVNMY--NKCGCIEYATKAFVEMP 455

Query: 83  QHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGK 142
              +LV +  +I  Y  + R H+A+ LF D++     P+  T   ++   +  G ++E  
Sbjct: 456 TR-TLVTWTSMISGYSQHGRPHDAIQLFEDMILAGAKPNEITFVSLLSACSYAGLVEEAM 514

Query: 143 QIHGLV---FKLGFGFDKFVLSSLVSMYAKFGEID-----LGRRVFDAMDDKDLVSWNCL 194
           +   ++   + +    D +    ++ M+ + G +D     + R+ F+  +      W+ L
Sbjct: 515 RYFDMMQNEYHIEPLMDHY--GCMIDMFVRLGRLDDAYAFIKRKGFEPNE----AIWSSL 568

Query: 195 IDGYVKKGEVEVAMKLFDEM 214
           + G    G +E+A    D +
Sbjct: 569 VAGCRSHGNMELAFYAADRL 588


>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g22410, mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 219/611 (35%), Positives = 346/611 (56%), Gaps = 47/611 (7%)

Query: 26  NILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHP 85
           ++L+  ++  + +++HA  + T LI      SRL++        NL Y     D+IL + 
Sbjct: 59  SLLEACTSMAKMKEIHAQMISTGLISDGFALSRLVAFCAISEWRNLDYC----DKILNNA 114

Query: 86  S---LVLYNLLIKCYVFNQRSHEALTLFCDLLDR-FLLPDNFTLPCVIKGAARLGAIKEG 141
           +      +N+ I+ YV ++    A+ L+ ++L +   +PDN+T P + K  A        
Sbjct: 115 ANLNXFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTA 174

Query: 142 KQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKK 201
            +I G V +LGF  D FV ++++ +    GE+   R++FD    +DLVSWN +I+GYV+ 
Sbjct: 175 NEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRC 234

Query: 202 GEVEVAMKLF------DEMPD--------------------RDLFS-------------W 222
           G  + A  L+      + MPD                    R L                
Sbjct: 235 GLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLA 294

Query: 223 TCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLI 282
             L+D + KC  +E A+ +F  M  + +VSW  M+ GY K G ++SA  LF++M  +D++
Sbjct: 295 NALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVV 354

Query: 283 TWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYI 342
            WN++I G+    R  EAL L   M    V P+  T+V+ LSA + L  L+ G WMH Y+
Sbjct: 355 LWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYV 414

Query: 343 VKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQAL 402
            K+   ++  LGT L+ MY+KCG+I+ A+ VF  +  +    WTA+I GL +HG    A+
Sbjct: 415 DKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAI 474

Query: 403 DLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDI 462
             F++M  +G+ P  ITFIGVL+AC H GLV+ GR YF  M + YGI P ++HY CLVD+
Sbjct: 475 SYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDL 534

Query: 463 LCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCY 522
           L R G+LEEA+  I SMP  P+ V+W +L  G+R HGN  +GE AA+ L+++ P   G Y
Sbjct: 535 LGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAASKLLELDPHDGGIY 594

Query: 523 VVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIH 582
           V+L+N+Y  A  W++  +VR+MM++RG  K PG SSIE  G++++F++ DKSHPQ+++I+
Sbjct: 595 VLLANMYGDANMWEQARKVRKMMEERGVEKTPGCSSIEMNGLVYDFIIRDKSHPQSEKIY 654

Query: 583 SKLSEMRNKLK 593
             L+ +  +++
Sbjct: 655 ECLTRLTRQIE 665


>gi|357160830|ref|XP_003578890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Brachypodium distachyon]
          Length = 631

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/567 (38%), Positives = 323/567 (56%), Gaps = 13/567 (2%)

Query: 133 ARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWN 192
           A+  ++  GK  HGL    G   D    + L+++Y K G  D  R VFD M  + +VSWN
Sbjct: 68  AKRKSLLVGKSCHGLAIHFGLVTDTLTCNILINLYTKCGRNDCARLVFDIMHVRSIVSWN 127

Query: 193 CLIDGYVKKGEVEVAMKLFDEM-------PDRDLFSWTCLVDGFSKCGKVEIAREIFYRM 245
            +I GY   GE   A+KLF  M        +  L S  C         + +    I  ++
Sbjct: 128 TMIAGYTHSGEDVQALKLFSRMHREGTHMSEFTLSSTICACAAKYAINECKQLHTIALKL 187

Query: 246 P-NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELL 304
             + N     A+++ Y K   +  AC +F+ M  R L+TW+S+ AGY  NG   EAL L 
Sbjct: 188 ALDSNSFVGTAILDVYAKCNMIKDACWVFEKMPERTLVTWSSLFAGYVQNGLHEEALHLF 247

Query: 305 ETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKC 364
                  V   + TL + LSA A LA+  +G  +H+ I+K GF  +  +   L+ +Y++C
Sbjct: 248 RCAQREGVELTEFTLSAILSACASLALKIEGIQLHAVILKCGFHGNFFVAASLVDVYARC 307

Query: 365 GSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVL 424
           G IE A  +F  +  K V  W AMI     H  + +A+ LF KM ++G+ P  +T++ VL
Sbjct: 308 GQIEKAYALFAYMEHKNVVIWNAMIASFSRHAHSWEAMILFEKMQQLGIFPNEVTYLSVL 367

Query: 425 NACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPN 484
           + CSHAGLV  GR YF+++++D  +EP + HY C+VD+L R+G  +EA   +  MP  P 
Sbjct: 368 SVCSHAGLVEKGRHYFSLLMSDRTVEPNVLHYSCMVDVLGRSGKTDEAWELLNKMPFEPT 427

Query: 485 FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREM 544
             +W SLL   RN+ N  +   AA  L ++ PD  G +V+LSN+YAA+G W+ V   R+ 
Sbjct: 428 ASMWGSLLGSCRNYNNIRLARIAAEQLFQLEPDNGGNHVLLSNVYAASGNWENVLMARKY 487

Query: 545 MKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQV 604
           +K  G +K+ G S IE +G +H FVVG++ HP+  +I++KL E+ ++++        T +
Sbjct: 488 LKDSGAKKEMGRSWIEAKGKVHVFVVGERKHPRITDIYNKLEEIYHEMRK---FARRTSI 544

Query: 605 LLCIED--QKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGI 662
              + D   ++KE  L++HSE+LA++FGLI++ S  PI I KNLR+C DCHS  K+ + I
Sbjct: 545 ECDLHDVHAEQKEELLKHHSEKLALSFGLISLPSNIPIIIHKNLRICGDCHSFMKIAAHI 604

Query: 663 YNREIIVRDNSRFHHFKNGSCSCKDFW 689
             R +IVRD +RFHHFK+GSCSC DFW
Sbjct: 605 TERLVIVRDTNRFHHFKDGSCSCGDFW 631



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 117/473 (24%), Positives = 189/473 (39%), Gaps = 121/473 (25%)

Query: 6   LQHSSPIHALQQHLPSRLHWNILKFSSTHKETQ------------QLHALSVKTNLIYHS 53
           L HSS   +L+    +R+  N++  S+  +  Q              H L++   L+  +
Sbjct: 36  LNHSS---SLKDRRLARIDRNLIDVSAISQRLQLCAKRKSLLVGKSCHGLAIHFGLVTDT 92

Query: 54  GISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDL 113
              + L++LY     N+   AR +FD I+   S+V +N +I  Y  +    +AL LF  +
Sbjct: 93  LTCNILINLYTKCGRNDC--ARLVFD-IMHVRSIVSWNTMIAGYTHSGEDVQALKLFSRM 149

Query: 114 LDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEI 173
                    FTL   I   A   AI E KQ+H +  KL    + FV ++++ +YAK   I
Sbjct: 150 HREGTHMSEFTLSSTICACAAKYAINECKQLHTIALKLALDSNSFVGTAILDVYAKCNMI 209

Query: 174 DLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFD-------EMPDRDL------- 219
                VF+ M ++ LV+W+ L  GYV+ G  E A+ LF        E+ +  L       
Sbjct: 210 KDACWVFEKMPERTLVTWSSLFAGYVQNGLHEEALHLFRCAQREGVELTEFTLSAILSAC 269

Query: 220 -------------------------FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWN 254
                                    F    LVD +++CG++E A  +F  M ++N+V WN
Sbjct: 270 ASLALKIEGIQLHAVILKCGFHGNFFVAASLVDVYARCGQIEKAYALFAYMEHKNVVIWN 329

Query: 255 AMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLP 314
           AMI  + +                    +W +MI              L E M    + P
Sbjct: 330 AMIASFSRHAH-----------------SWEAMI--------------LFEKMQQLGIFP 358

Query: 315 NDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVF 374
           N+ T +S LS  +   ++ KGR   S ++ +  V   VL                     
Sbjct: 359 NEVTYLSVLSVCSHAGLVEKGRHYFSLLMSDRTVEPNVL--------------------- 397

Query: 375 RAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNAC 427
                    H++ M+  LG  G   +A +L NK   M  +PTA  +  +L +C
Sbjct: 398 ---------HYSCMVDVLGRSGKTDEAWELLNK---MPFEPTASMWGSLLGSC 438


>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 235/667 (35%), Positives = 360/667 (53%), Gaps = 27/667 (4%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +++HA  ++        + + L+++YV     ++  AR +FD++ +    + +N +I  Y
Sbjct: 218 KEIHAHVIRFGFESDVDVGNALITMYVK--CGDISNARMLFDKMPKRDR-ISWNAMISGY 274

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
             N    E L LF  + +  + PD  T+  V      L   + G+ +HG V K  FG D 
Sbjct: 275 FENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDI 334

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYV------KKGEVEVAMKLF 211
            + +SL+ MY+  G ++    VF  M+ KD+VSW  +I   V      K  E    M+L 
Sbjct: 335 SMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELE 394

Query: 212 DEMPDRDLFSWTCLVDGFSKC---GKVEIAREIFYRMPNRNLVSW----NAMINGYMKAG 264
             +PD        LV   S C   G +++   +        LVS     N++I+ Y K  
Sbjct: 395 GILPDE-----ITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCK 449

Query: 265 DVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS 324
            VD+A E+F ++  +++++W S+I G  +N R  EAL     M    + PN  TL+S LS
Sbjct: 450 CVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMK-ESMKPNSVTLISVLS 508

Query: 325 AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGH 384
           A A +  L +G+ +H++ ++ G   DG L   ++ MY +CG    AL  F +  KK V  
Sbjct: 509 ACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFNS-QKKDVTA 567

Query: 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMI 444
           W  ++ G    G A  A++LF+KM  + + P  ITFI +L ACS +G+V +G  YFN+M 
Sbjct: 568 WNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMK 627

Query: 445 NDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIG 504
           N Y + P ++HY C+VDIL R G L++A   I+ MP+RP+  IW +LL+  R H N ++G
Sbjct: 628 NKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALLNACRIHRNVELG 687

Query: 505 EYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGV 564
           E AA  + +    ++G Y++L N+YA  G WDKVS+VR +M++RG   DPG S +E +G 
Sbjct: 688 EIAAKRVFEKDNKSVGYYILLCNLYAGCGNWDKVSKVRSLMRERGLSADPGCSWVEIKGK 747

Query: 565 LHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSER 624
           +H F+ GD SH Q+ EI+  L    +K+K  G      +     E +  +      HSER
Sbjct: 748 VHAFLSGDNSHSQSKEINGVLDGFCSKMKENGF--GNLKSSFTSEIESSRADIFCGHSER 805

Query: 625 LAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCS 684
            AIAFGLIN     PI + KNL +C+ CH++ K +S I  REI VRD   +HHFK+G CS
Sbjct: 806 QAIAFGLINTAPGMPIWVTKNLYMCHSCHNMVKFISTIVRREISVRDVEEYHHFKDGVCS 865

Query: 685 CKD--FW 689
           C D  +W
Sbjct: 866 CGDEGYW 872



 Score =  197 bits (501), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 143/479 (29%), Positives = 242/479 (50%), Gaps = 25/479 (5%)

Query: 55  ISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL 114
           + + LLS++V     NL  A  +F ++ +   +  +N+L+  Y       EAL L+  +L
Sbjct: 134 LGNALLSMFV--RFGNLLDAWYVFGKMSER-DVFSWNVLVGGYAKAGCFDEALNLYHRML 190

Query: 115 DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEID 174
              + P+ +T P V+K  A +  I  GK+IH  V + GF  D  V ++L++MY K G+I 
Sbjct: 191 WAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDIS 250

Query: 175 LGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP----DRDLFSWTCLVDGFS 230
             R +FD M  +D +SWN +I GY + G     ++LF  M     D DL + T +     
Sbjct: 251 NARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACE 310

Query: 231 KCGKVEIAREIF-YRMPNR---NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNS 286
                 + R +  Y + +    ++   N++I  Y   G ++ A  +F  ME +D+++W +
Sbjct: 311 LLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTA 370

Query: 287 MIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNG 346
           MIA    +    +A+E  + M +  +LP++ TLVS LSA A +  L+ G  +H   +K G
Sbjct: 371 MIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTG 430

Query: 347 FVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFN 406
            V   ++   LI MYSKC  +++AL VFR IS K V  WT++I+GL ++  + +AL  F 
Sbjct: 431 LVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFR 490

Query: 407 KMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCL----VDI 462
           +M +  MKP ++T I VL+AC+  G +  G+      I+ + +   +   G L    +D+
Sbjct: 491 QM-KESMKPNSVTLISVLSACARIGALMRGKE-----IHAHALRTGVGFDGFLPNAILDM 544

Query: 463 LCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNL--IKVAPDTI 519
             R G    A +   S   + +   W  LL+G    G   +     + +  +++ PD I
Sbjct: 545 YVRCGRKVPALNQFNS--QKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEI 601



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/300 (29%), Positives = 150/300 (50%), Gaps = 7/300 (2%)

Query: 254 NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL 313
           NA+++ +++ G++  A  +F  M  RD+ +WN ++ GY   G F EAL L   ML  ++ 
Sbjct: 136 NALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIR 195

Query: 314 PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTV 373
           PN  T  S L   AG++ + +G+ +H+++++ GF  D  +G  LI MY KCG I +A  +
Sbjct: 196 PNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARML 255

Query: 374 FRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLV 433
           F  + K+    W AMI G   +G   + L+LF+ M  + + P  IT   V +AC      
Sbjct: 256 FDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNE 315

Query: 434 NDGRRYFNMMI-NDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLL 492
             GR     ++ +++G + ++ +   L+ +    G LEEA++    M  + + V W +++
Sbjct: 316 RLGRGVHGYVVKSEFGGDISMNN--SLIQMYSSLGRLEEAETVFSRMESK-DVVSWTAMI 372

Query: 493 SGARNHG--NKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGF 550
           +   +H    K +  Y    L  + PD I    VLS   A  G  D    + E+  K G 
Sbjct: 373 ASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSAC-ACIGHLDLGIRLHEIAIKTGL 431


>gi|302762388|ref|XP_002964616.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
 gi|300168345|gb|EFJ34949.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
          Length = 795

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 227/644 (35%), Positives = 353/644 (54%), Gaps = 16/644 (2%)

Query: 55  ISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL 114
           + + LL++Y      +L  A+ +F+R +   S+  +N +I  Y  +    EA+ L+ D+ 
Sbjct: 159 LENSLLTMYA--KCGSLEDAKRLFER-MSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDM- 214

Query: 115 DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEID 174
              + P   T   V+   + LG + +G++IH L+   G   D  + ++L++MYA+   +D
Sbjct: 215 --DVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLD 272

Query: 175 LGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP----DRDLFSWTCLVDGFS 230
              ++F  +  +D+VSW+ +I  + +    + A++ + +M       + +++  ++   +
Sbjct: 273 DAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACA 332

Query: 231 KCGKVEIAREIFYRMPNR----NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNS 286
             G +   R +  ++        LV+  A+++ Y   G +D A  LFD +E RD   W  
Sbjct: 333 SVGDLRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTV 392

Query: 287 MIAGYELNGRFMEALELLETMLIGDVLPNDATLVS-ALSAVAGLAVLNKGRWMHSYIVKN 345
           +I GY   G     LEL   M     +P    + S  +SA A L      R  HS I  +
Sbjct: 393 LIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEAD 452

Query: 346 GFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLF 405
           G + D VL T L+ MYS+ G++ESA  VF  +S +    WT +I G   HG    AL L+
Sbjct: 453 GMISDFVLATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLY 512

Query: 406 NKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCR 465
            +M   G +P+ +TF+ VL ACSHAGL   G++ F  + +DY + P I HY C++D+L R
Sbjct: 513 KEMELEGAEPSELTFMVVLYACSHAGLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSR 572

Query: 466 TGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVL 525
            G L +A+  I +MP+ PN V W SLL  +R H +     +AA  + K+ P     YV+L
Sbjct: 573 AGRLSDAEELINAMPVEPNDVTWSSLLGASRIHKDVKRATHAAGQITKLDPVDPASYVLL 632

Query: 526 SNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKL 585
           SN++A  G    ++ VR  M  RG +K  GSS IE    +HEF VGD SHP+  EI ++L
Sbjct: 633 SNVHAVTGNLAGMASVRNTMVARGVKKRRGSSWIEVADQIHEFNVGDNSHPRFQEIFAEL 692

Query: 586 SEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKN 645
             +  K+K AG+VP++ +VL  +  +KEKE  L  HSE+LAIAFGLI     + +RI   
Sbjct: 693 QRLSPKIKEAGYVPESEEVLHDV-GEKEKELLLRLHSEKLAIAFGLIATAPGTTLRIFNT 751

Query: 646 LRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           LR+C+DCHS  K +S I  REIIVRD+SRFH F++G CSC D+W
Sbjct: 752 LRICHDCHSAVKFISAIARREIIVRDSSRFHKFRDGQCSCGDYW 795



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 136/467 (29%), Positives = 228/467 (48%), Gaps = 27/467 (5%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRF-LLPDNFTLPCVIKGA 132
           AR+ FD I +      +  ++  Y  N     AL    DL  R  L P+      V+   
Sbjct: 77  ARAAFDAIARKNDYS-WGSMLTAYAQNGHYRAAL----DLYKRMDLQPNPVVYTTVLGAC 131

Query: 133 ARLGAIKEGKQIHGLVFKL-GFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSW 191
           A + A++EGK IH  +    G   D  + +SL++MYAK G ++  +R+F+ M  + + SW
Sbjct: 132 ASIKALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRSVSSW 191

Query: 192 NCLIDGYVKKGEVEVAMKLFDEMP-DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR-- 248
           N +I  Y + G  E A++L+++M  +  + ++T ++   S  G ++  R+I   + +R  
Sbjct: 192 NAMIAAYAQSGHFEEAIRLYEDMDVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGT 251

Query: 249 --NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLET 306
             +L   NA++  Y +   +D A ++F  +  RD+++W++MIA +     F EA+E    
Sbjct: 252 ELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSK 311

Query: 307 MLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGS 366
           M +  V PN  T  S L A A +  L  GR +H  I+ NG+ +  V GT L+ +Y+  GS
Sbjct: 312 MQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGS 371

Query: 367 IESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKP-TAITFIGVLN 425
           ++ A ++F  I  +  G WT +I G    G  T  L+L+ +M      P T I +  V++
Sbjct: 372 LDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVIS 431

Query: 426 ACSHAGLVNDGRRYF-----NMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP 480
           AC+  G   D R+       + MI+D+ +  +      LV++  R G LE A+   + M 
Sbjct: 432 ACASLGAFADARQAHSDIEADGMISDFVLATS------LVNMYSRWGNLESARQVFDKMS 485

Query: 481 MRPNFVIWMSLLSGARNHGNKD--IGEYAANNLIKVAPDTIGCYVVL 525
            R     W +L++G   HG     +G Y    L    P  +   VVL
Sbjct: 486 SRDTLA-WTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVVL 531



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 111/420 (26%), Positives = 201/420 (47%), Gaps = 23/420 (5%)

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP-D 216
           F+ + +V  Y K G +   R  FDA+  K+  SW  ++  Y + G    A+ L+  M   
Sbjct: 59  FLGNEIVRAYGKCGSVASARAAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRMDLQ 118

Query: 217 RDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR-----NLVSWNAMINGYMKAGDVDSACE 271
            +   +T ++   +    +E  + I  R+        +++  N+++  Y K G ++ A  
Sbjct: 119 PNPVVYTTVLGACASIKALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKR 178

Query: 272 LFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAV 331
           LF+ M  R + +WN+MIA Y  +G F EA+ L E M   DV P+  T  S LSA + L +
Sbjct: 179 LFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDM---DVEPSVRTFTSVLSACSNLGL 235

Query: 332 LNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVG 391
           L++GR +H+ I   G  +D  L   L+ MY++C  ++ A  +F+ + ++ V  W+AMI  
Sbjct: 236 LDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAA 295

Query: 392 LGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP 451
                +  +A++ ++KM   G++P   TF  VL AC+  G +  GR   + ++ + G + 
Sbjct: 296 FAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGN-GYKI 354

Query: 452 TIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNL 511
           T+ +   LVD+    G L+EA+S  + +  R    +W  L+ G    G++  G       
Sbjct: 355 TLVNGTALVDLYTSYGSLDEARSLFDQIENRDEG-LWTVLIGGYSKQGHR-TGVLELYRE 412

Query: 512 IKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVG 571
           +K         ++ S + +A       ++ R+             S IE  G++ +FV+ 
Sbjct: 413 MKNTTKVPATKIIYSCVISACASLGAFADARQ-----------AHSDIEADGMISDFVLA 461



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 83/272 (30%), Positives = 139/272 (51%), Gaps = 12/272 (4%)

Query: 227 DGFSKCGKVEIAREIFYRM---PNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLIT 283
           D   +C  +E  R+I  R+    + N+   N ++  Y K G V SA   FD +  ++  +
Sbjct: 32  DALRQCQDLESVRQIHDRISGAASANVFLGNEIVRAYGKCGSVASARAAFDAIARKNDYS 91

Query: 284 WNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIV 343
           W SM+  Y  NG +  AL+L + M   D+ PN     + L A A +  L +G+ +HS I 
Sbjct: 92  WGSMLTAYAQNGHYRAALDLYKRM---DLQPNPVVYTTVLGACASIKALEEGKAIHSRIS 148

Query: 344 -KNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQAL 402
              G  +D +L   L+ MY+KCGS+E A  +F  +S + V  W AMI      G   +A+
Sbjct: 149 GTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRSVSSWNAMIAAYAQSGHFEEAI 208

Query: 403 DLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDI 462
            L+     M ++P+  TF  VL+ACS+ GL++ GR+  + +I+  G E  +     L+ +
Sbjct: 209 RLYED---MDVEPSVRTFTSVLSACSNLGLLDQGRK-IHALISSRGTELDLSLQNALLTM 264

Query: 463 LCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG 494
             R   L++A    + +P R + V W ++++ 
Sbjct: 265 YARCKCLDDAAKIFQRLPRR-DVVSWSAMIAA 295


>gi|317106614|dbj|BAJ53121.1| JHL07K02.11 [Jatropha curcas]
          Length = 514

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 218/573 (38%), Positives = 326/573 (56%), Gaps = 66/573 (11%)

Query: 118 LLPDNFTLPCVIKGAARLGA-IKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLG 176
           +LPD+  L C +  A +L   I+   + H  + + G+G +  + +SL+S Y    +++L 
Sbjct: 7   ILPDH-QLFCDLLEACKLSQDIRTATETHTRIIRFGYGTNSSIAASLISTYVNCNQLNLA 65

Query: 177 RRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVE 236
            +V                                     R +FSWT  + G        
Sbjct: 66  YQVI------------------------------------RQVFSWTVSLAGL------- 82

Query: 237 IAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGR 296
                            N +I+ +M+ G+ + A ++F  M  RD++TWNSMI GY  NG+
Sbjct: 83  -----------------NLVIDSFMRIGEYEIAKKVFCKMPDRDVVTWNSMIGGYVRNGK 125

Query: 297 FMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTL 356
           F EAL   + ML  +V P+  T  S ++A A L  LN  +W+H  +V+    V+ +L + 
Sbjct: 126 FEEALRSFQAMLSSNVEPDKFTFASVITACARLGALNHAQWLHDLMVQKRIEVNFILSSA 185

Query: 357 LIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT 416
           LI MYSKCG IE+A  VF ++ +  V  W ++I GL +HG+A  A+ +F+KM    + P 
Sbjct: 186 LIDMYSKCGRIETAKEVFESVERNDVSVWNSLINGLAVHGLALDAMMVFSKMEAENVLPD 245

Query: 417 AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTI 476
           ++TF+G+L ACSH GLV +GR+YF++M N Y I+P +EHYG +VD+L R G L+EA + I
Sbjct: 246 SLTFLGILKACSHCGLVKEGRKYFDLMENYYSIKPQLEHYGAMVDLLGRAGLLDEAYAMI 305

Query: 477 ESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWD 536
            +MPM P+ ++W  LLS  R H N ++GE A  N+    P + G YV+LSNIY +  +WD
Sbjct: 306 TAMPMEPDVIVWRILLSACRTHRNTELGEVAVANI--SGPKS-GDYVLLSNIYCSQNRWD 362

Query: 537 KVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAG 596
              EVREMMK+ G RK  G S  E   V+H F  GDKSHP+T+ ++  L  +  + K  G
Sbjct: 363 NAQEVREMMKEEGVRKRRGKSWFEWEDVVHRFRAGDKSHPETEALYKILEGLIQRTKLEG 422

Query: 597 HVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVT 656
            VP T  V++ + ++ EKE  L +HSE+LA+A+G++     + IRI KNLR+C DCH+  
Sbjct: 423 FVPSTELVMMDVSEE-EKEENLYHHSEKLALAYGILKTSPGTEIRIYKNLRICYDCHNWI 481

Query: 657 KLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           K++SG+ +R II+RD  RFH F+ GSCSC D+W
Sbjct: 482 KMVSGLLSRVIIIRDRIRFHRFEGGSCSCGDYW 514



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/271 (27%), Positives = 129/271 (47%), Gaps = 13/271 (4%)

Query: 32  STHKETQQLHALSVKTNLIYHSGISSRLLSLYVDP--HINNLHYARSIFDRILQHPSLVL 89
           ST+    QL+        ++   +S   L+L +D    I     A+ +F + +    +V 
Sbjct: 54  STYVNCNQLNLAYQVIRQVFSWTVSLAGLNLVIDSFMRIGEYEIAKKVFCK-MPDRDVVT 112

Query: 90  YNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVF 149
           +N +I  YV N +  EAL  F  +L   + PD FT   VI   ARLGA+   + +H L+ 
Sbjct: 113 WNSMIGGYVRNGKFEEALRSFQAMLSSNVEPDKFTFASVITACARLGALNHAQWLHDLMV 172

Query: 150 KLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMK 209
           +     +  + S+L+ MY+K G I+  + VF++++  D+  WN LI+G    G    AM 
Sbjct: 173 QKRIEVNFILSSALIDMYSKCGRIETAKEVFESVERNDVSVWNSLINGLAVHGLALDAMM 232

Query: 210 LFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREIFYRMPNR-----NLVSWNAMINGY 260
           +F +M       D  ++  ++   S CG V+  R+ F  M N       L  + AM++  
Sbjct: 233 VFSKMEAENVLPDSLTFLGILKACSHCGLVKEGRKYFDLMENYYSIKPQLEHYGAMVDLL 292

Query: 261 MKAGDVDSACELFDDMEIR-DLITWNSMIAG 290
            +AG +D A  +   M +  D+I W  +++ 
Sbjct: 293 GRAGLLDEAYAMITAMPMEPDVIVWRILLSA 323


>gi|9294596|dbj|BAB02877.1| unnamed protein product [Arabidopsis thaliana]
          Length = 695

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 222/639 (34%), Positives = 354/639 (55%), Gaps = 48/639 (7%)

Query: 26  NILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHP 85
           +IL    T  + +QLH+ S+   +  +     +L   +      ++ YA  +F +I + P
Sbjct: 39  SILGVCKTTDQFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFVKIPE-P 97

Query: 86  SLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLG-AIKEGKQI 144
            +V++N +IK +       E + L+ ++L   + PD+ T P ++ G  R G A+  GK++
Sbjct: 98  DVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKKL 157

Query: 145 HGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEV 204
           H  V K G G + +V ++LV MY+  G +D+ R VFD    +D+ SWN +I GY +  E 
Sbjct: 158 HCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEY 217

Query: 205 EVAMKLFDEMPDRDLFSWT----------------------------------------C 224
           E +++L  EM +R+L S T                                         
Sbjct: 218 EESIELLVEM-ERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENA 276

Query: 225 LVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITW 284
           LV+ ++ CG+++IA  IF  M  R+++SW +++ GY++ G++  A   FD M +RD I+W
Sbjct: 277 LVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISW 336

Query: 285 NSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVK 344
             MI GY   G F E+LE+   M    ++P++ T+VS L+A A L  L  G W+ +YI K
Sbjct: 337 TIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDK 396

Query: 345 NGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDL 404
           N    D V+G  LI MY KCG  E A  VF  + ++    WTAM+VGL  +G   +A+ +
Sbjct: 397 NKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKV 456

Query: 405 FNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILC 464
           F +M  M ++P  IT++GVL+AC+H+G+V+  R++F  M +D+ IEP++ HYGC+VD+L 
Sbjct: 457 FFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLG 516

Query: 465 RTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVV 524
           R G ++EA   +  MPM PN ++W +LL  +R H ++ + E AA  ++++ PD    Y +
Sbjct: 517 RAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPDNGAVYAL 576

Query: 525 LSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSK 584
           L NIYA   +W  + EVR  +     +K PG S IE  G  HEFV GDKSH Q++EI+ K
Sbjct: 577 LCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAGDKSHLQSEEIYMK 636

Query: 585 LSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSE 623
           L E+  +   A ++PDT+++L      +    ELE HS+
Sbjct: 637 LEELAQESTFAAYLPDTSELLF-----EAGNKELEEHSQ 670


>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 212/552 (38%), Positives = 320/552 (57%), Gaps = 41/552 (7%)

Query: 178 RVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEI 237
           RV  +++  D    + L+  Y K G  E A +LFDEMP++DL SW  L+ G S  G +  
Sbjct: 87  RVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGA 146

Query: 238 AREIFYRM-------PNR----NLVSW-----------------------------NAMI 257
               F RM       PN     ++VS                              N++I
Sbjct: 147 CLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLI 206

Query: 258 NGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDA 317
           N Y K G +D+A +LF++M +R L++WNSM+  +  NG   + ++L   M    + P+ A
Sbjct: 207 NMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQA 266

Query: 318 TLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAI 377
           T+V+ L A     +  +   +H+YI + GF  D ++ T L+ +Y+K G + ++  +F  I
Sbjct: 267 TMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEI 326

Query: 378 SKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGR 437
             +    WTAM+ G  +H    +A+ LF+ M + G++   +TF  +L+ACSH+GLV +G+
Sbjct: 327 KDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGK 386

Query: 438 RYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARN 497
           +YF +M   Y +EP ++HY C+VD+L R+G LE+A   I+SMPM P+  +W +LL   R 
Sbjct: 387 KYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRV 446

Query: 498 HGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSS 557
           +GN ++G+  A  L+ + P     Y++LSNIY+AAG W   S+VR +MK+R   ++PG S
Sbjct: 447 YGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRLTRNPGCS 506

Query: 558 SIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAE 617
            IEH   +H FVVGD+ HP++DEIH+KL E+  K++ AG  P T  VL  I D++ K   
Sbjct: 507 FIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIREAGCAPKTEFVLHDI-DEEVKVDM 565

Query: 618 LENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHH 677
           +  HSE+LAIAFGL+   S  P+ I KNLR+C DCHS  K  S +  R II+RD+ RFHH
Sbjct: 566 INKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHSTAKFASLLEKRTIIIRDSKRFHH 625

Query: 678 FKNGSCSCKDFW 689
           F +G CSC+D+W
Sbjct: 626 FADGLCSCRDYW 637



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 113/424 (26%), Positives = 191/424 (45%), Gaps = 63/424 (14%)

Query: 40  LHALSVKTNLIYHSG-ISSRLLSLYVDPHINNLHY---ARSIFDRILQHPSLVLYNLLIK 95
           +HA  +K+ L Y  G I  RL+S+Y       L Y   A+ +FD  + +  LV +N L+ 
Sbjct: 84  IHARVIKS-LNYSDGFIGDRLVSMYF-----KLGYDEDAQRLFDE-MPNKDLVSWNSLMS 136

Query: 96  CYVFNQRSHEALTLFCDL-LDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
                      L  FC +  +    P+  TL  V+   A +GA+ EGK +HG+V KLG  
Sbjct: 137 GLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMS 196

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
               V++SL++MY K G +D   ++F+ M  + LVSWN ++  +   G  E  M LF+ M
Sbjct: 197 GKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLM 256

Query: 215 P----DRDLFSWTCLVDGFSKCGKVEIAREIFYRMP----NRNLVSWNAMINGYMKAGDV 266
                + D  +   L+   +  G    A  I   +     N +++   A++N Y K G +
Sbjct: 257 KRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRL 316

Query: 267 DSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326
           +++ ++F++++ RD I W +M+AGY ++    EA++L + M                   
Sbjct: 317 NASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLM------------------- 357

Query: 327 AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS-----KKK 381
                           VK G  VD V  T L+   S  G +E     F  +S     + +
Sbjct: 358 ----------------VKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPR 401

Query: 382 VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFN 441
           + H++ M+  LG  G    A +L      M M+P++  +  +L AC   G V  G+    
Sbjct: 402 LDHYSCMVDLLGRSGRLEDAYELIKS---MPMEPSSGVWGALLGACRVYGNVELGKEVAE 458

Query: 442 MMIN 445
            +++
Sbjct: 459 QLLS 462



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 140/298 (46%), Gaps = 12/298 (4%)

Query: 210 LFDEMPDRDLFSWT-CLVDGFSKCGKVEIAREIFYRMPNRNLVS----WNAMINGYMKAG 264
           LF   P   ++S    LV   S C  V     I  R+      S     + +++ Y K G
Sbjct: 52  LFQLSPPFQVYSIVQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLG 111

Query: 265 DVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLI-GDVLPNDATLVSAL 323
             + A  LFD+M  +DL++WNS+++G    G     L     M       PN+ TL+S +
Sbjct: 112 YDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVV 171

Query: 324 SAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVG 383
           SA A +  L++G+ +H  +VK G      +   LI MY K G +++A  +F  +  + + 
Sbjct: 172 SACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLV 231

Query: 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRY--FN 441
            W +M+V    +G A + +DLFN M R G+ P   T + +L AC+  GL   GR+    +
Sbjct: 232 SWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGL---GRQAESIH 288

Query: 442 MMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
             I+  G    I     L+++  + G L  ++   E +  R + + W ++L+G   H 
Sbjct: 289 AYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDR-DRIAWTAMLAGYAVHA 345


>gi|302785251|ref|XP_002974397.1| hypothetical protein SELMODRAFT_101239 [Selaginella moellendorffii]
 gi|300157995|gb|EFJ24619.1| hypothetical protein SELMODRAFT_101239 [Selaginella moellendorffii]
          Length = 679

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 226/641 (35%), Positives = 341/641 (53%), Gaps = 80/641 (12%)

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD 187
           VI+  ARLGA+ EG++IH L+ ++G G D +V + LV MY K G ++  R VF+A   K+
Sbjct: 40  VIQSCARLGALAEGRRIHQLMRRVGLGSDVYVSNHLVMMYGKCGSLEEARLVFEATPAKN 99

Query: 188 LVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL---------------------------- 219
           + SW  LI    + G  + A+ LF EM  + +                            
Sbjct: 100 VFSWTILITVCAQHGRSQEALALFYEMLKQGIQPHSVSFTAAINACSAGPEFLPAGRALH 159

Query: 220 ------------FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMI---------- 257
                        + T LV  +SKCG +E +   F  M   N VSWNAMI          
Sbjct: 160 ALLRRYGFQDAVVATTSLVSMYSKCGSLEESMRTFESMTEPNAVSWNAMIAAFAEHRRGL 219

Query: 258 ---------------------------NGYMKAGDVDSACELFDDMEIRDLITWNSMIAG 290
                                      N Y K   +  A   F  ++  ++ITWN +I+ 
Sbjct: 220 EALRTLQKMFLEGIRACSDVVVGTTLVNMYAKCSGLHDANAAFVKLQEPNIITWNVLISA 279

Query: 291 YELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVD 350
           Y  +  F EA+EL   ML+  +  ++ T ++ L A      L  GR +H+ + ++    +
Sbjct: 280 YVQHCCFKEAMELFRRMLLLGLEMDEVTFINILGACCVPVALEDGRAIHACVREHPLASN 339

Query: 351 -GVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMC 409
              L  +++ MY KCGS++ A  +F+++S+  V  W  MI   G HG  ++AL  +  M 
Sbjct: 340 HAPLENVILNMYGKCGSLQDAEAMFKSMSQPDVIAWNTMIAAYGQHGHTSEALRFYELMQ 399

Query: 410 RMGMKPTAITFIGVLNA-CSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGY 468
             G+ P   T++ V++A C++AGL  +   YF  M  D+G+ P   HYGC+V+ L + G 
Sbjct: 400 EEGVVPDDYTYVSVIDASCANAGLPEEAHAYFVSMQQDHGVRPGGGHYGCMVESLGKAGR 459

Query: 469 LEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNI 528
           L +A++ I+ MP  P+ + W S L+  R+HG+   G+ AA   I++ P+    YV L+ I
Sbjct: 460 LSDAETLIQCMPFEPDVLTWTSFLANCRSHGDMKRGKLAAKGAIRIDPEASTGYVALARI 519

Query: 529 YAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEM 588
           +A AG + + S +R++M  RG RK+ G S I+    ++EF  GD+S+P++ EI  +L  +
Sbjct: 520 HADAGDFQEASRIRKLMLDRGIRKNAGRSIIKLGTSVYEFTAGDQSNPRSKEIFDELKRL 579

Query: 589 RNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRV 648
             ++K+AG+ PD   V   +E   +KE  L  HSERLAIAFG+I+    +P+RI+KNLRV
Sbjct: 580 DKEMKSAGYDPDMAHVAHDVE-AGQKEPLLFAHSERLAIAFGIISTSPGTPLRIMKNLRV 638

Query: 649 CNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           C DCH++TKL S I  REIIVRD++RFHHFKNGSCSCKDFW
Sbjct: 639 CGDCHTMTKLTSKITRREIIVRDSNRFHHFKNGSCSCKDFW 679



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 90/179 (50%), Gaps = 1/179 (0%)

Query: 320 VSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK 379
           V  + + A L  L +GR +H  + + G   D  +   L+ MY KCGS+E A  VF A   
Sbjct: 38  VRVIQSCARLGALAEGRRIHQLMRRVGLGSDVYVSNHLVMMYGKCGSLEEARLVFEATPA 97

Query: 380 KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRY 439
           K V  WT +I     HG + +AL LF +M + G++P +++F   +NACS         R 
Sbjct: 98  KNVFSWTILITVCAQHGRSQEALALFYEMLKQGIQPHSVSFTAAINACSAGPEFLPAGRA 157

Query: 440 FNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNH 498
            + ++  YG +  +     LV +  + G LEE+  T ESM   PN V W ++++    H
Sbjct: 158 LHALLRRYGFQDAVVATTSLVSMYSKCGSLEESMRTFESM-TEPNAVSWNAMIAAFAEH 215



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 118/253 (46%), Gaps = 15/253 (5%)

Query: 55  ISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL 114
           + + L+++Y     + LH A + F + LQ P+++ +N+LI  YV +    EA+ LF  +L
Sbjct: 241 VGTTLVNMYAK--CSGLHDANAAFVK-LQEPNIITWNVLISAYVQHCCFKEAMELFRRML 297

Query: 115 DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLV-SMYAKFGEI 173
              L  D  T   ++       A+++G+ IH  V +     +   L +++ +MY K G +
Sbjct: 298 LLGLEMDEVTFINILGACCVPVALEDGRAIHACVREHPLASNHAPLENVILNMYGKCGSL 357

Query: 174 DLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDG- 228
                +F +M   D+++WN +I  Y + G    A++ ++ M +     D +++  ++D  
Sbjct: 358 QDAEAMFKSMSQPDVIAWNTMIAAYGQHGHTSEALRFYELMQEEGVVPDDYTYVSVIDAS 417

Query: 229 FSKCGKVEIAREIFYRMPNRNLVS-----WNAMINGYMKAGDVDSACELFDDMEIR-DLI 282
            +  G  E A   F  M   + V      +  M+    KAG +  A  L   M    D++
Sbjct: 418 CANAGLPEEAHAYFVSMQQDHGVRPGGGHYGCMVESLGKAGRLSDAETLIQCMPFEPDVL 477

Query: 283 TWNSMIAGYELNG 295
           TW S +A    +G
Sbjct: 478 TWTSFLANCRSHG 490


>gi|242047514|ref|XP_002461503.1| hypothetical protein SORBIDRAFT_02g003670 [Sorghum bicolor]
 gi|241924880|gb|EER98024.1| hypothetical protein SORBIDRAFT_02g003670 [Sorghum bicolor]
          Length = 786

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 201/455 (44%), Positives = 295/455 (64%), Gaps = 2/455 (0%)

Query: 218 DLFSWTCLVDGFSKCGKVEIAREIFYRMP-NRNLVSWNAMINGYMKAGDVDSACELFDDM 276
           DL+    L+  +  CG V   R++F  +P  R++V+WNA++ GY++AG V  A E+FD M
Sbjct: 164 DLYVRNALIHFYGVCGDVAAMRKVFDELPLVRDVVTWNAVLAGYVRAGMVGVAREVFDGM 223

Query: 277 EIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGR 336
            +RD ++W++++ GY   G    AL + + M++  V  N+A +V+ALSA A L +L +G+
Sbjct: 224 PMRDEVSWSTVVGGYVKEGELEVALGVFKNMVVQGVKANEAAIVTALSAAAQLGLLEQGK 283

Query: 337 WMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHG 396
           ++H  I + G  +   LG  L+ MYSKCGS+ +A  VF A+  + V  W +MI GL  HG
Sbjct: 284 FVHEVIKRAGVAMSMNLGAALVDMYSKCGSVAAAKEVFDAMPWRDVFAWNSMICGLATHG 343

Query: 397 MATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHY 456
           +   A+ LF K    G  PT ITF+GVLNACS  GLV++GR YF +M   YGIE  +EHY
Sbjct: 344 LGHDAVQLFEKFVSEGFCPTNITFVGVLNACSRTGLVDEGRWYFKLMAEKYGIESEMEHY 403

Query: 457 GCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAP 516
           GC+VD+L R G ++EA   IE M + P+ V+W ++LS  + HG  D+G    N LI++ P
Sbjct: 404 GCMVDLLSRAGLVQEAIELIEGMHIPPDPVLWGTVLSACKRHGLVDLGITVGNKLIELDP 463

Query: 517 DTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHP 576
              G YV+L++IYA A +WD+V +VR++M  RG  K  G S +E  G++H+F+VGD  H 
Sbjct: 464 AHDGYYVLLASIYAKAKKWDEVRKVRKLMSNRGTSKSAGWSLMEAHGIVHKFLVGDMDHK 523

Query: 577 QTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKS 636
            + +I++ L  +  +L  AG+VPD + VL  I D+ EK   ++ HSERLAIA+G I V++
Sbjct: 524 DSVQIYNMLCMIDRRLAEAGYVPDVSSVLHDIGDE-EKVHAIKVHSERLAIAYGFIVVEA 582

Query: 637 RSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRD 671
            SPIRIVKNL VC DCH  +K+++ ++ REIIVRD
Sbjct: 583 GSPIRIVKNLSVCGDCHEFSKMVTKVFGREIIVRD 617



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 121/453 (26%), Positives = 198/453 (43%), Gaps = 93/453 (20%)

Query: 73  YARSIFDRILQHP-SLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCV-IK 130
           +A +   R+L HP  L L+  L       +R+  + T     L   L  D    P V + 
Sbjct: 93  FASNHLLRVLPHPLPLRLFPRL------PRRNPHSFTFLLASLSNHLDAD----PAVAVS 142

Query: 131 GAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD-DKDLV 189
            A+RL     G  +H L  K G   D +V ++L+  Y   G++   R+VFD +   +D+V
Sbjct: 143 IASRL----MGAHVHALAVKAGAAGDLYVRNALIHFYGVCGDVAAMRKVFDELPLVRDVV 198

Query: 190 SWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRN 249
           +WN ++ GYV+ G V VA ++FD MP RD  SW+ +V G+ K G++E+A  +F  M  + 
Sbjct: 199 TWNAVLAGYVRAGMVGVAREVFDGMPMRDEVSWSTVVGGYVKEGELEVALGVFKNMVVQG 258

Query: 250 L------------------------------------VSWN---AMINGYMKAGDVDSAC 270
           +                                    +S N   A+++ Y K G V +A 
Sbjct: 259 VKANEAAIVTALSAAAQLGLLEQGKFVHEVIKRAGVAMSMNLGAALVDMYSKCGSVAAAK 318

Query: 271 ELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLA 330
           E+FD M  RD+  WNSMI G   +G   +A++L E  +     P + T V  L+A +   
Sbjct: 319 EVFDAMPWRDVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCPTNITFVGVLNACSRTG 378

Query: 331 VLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIV 390
           ++++GRW                  L+ + Y     IES +            H+  M+ 
Sbjct: 379 LVDEGRWYFK---------------LMAEKY----GIESEME-----------HYGCMVD 408

Query: 391 GLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIE 450
            L   G+  +A++L      M + P  + +  VL+AC   GLV+ G    N +I    ++
Sbjct: 409 LLSRAGLVQEAIELIEG---MHIPPDPVLWGTVLSACKRHGLVDLGITVGNKLIE---LD 462

Query: 451 PTIE-HYGCLVDILCRTGYLEEAKSTIESMPMR 482
           P  + +Y  L  I  +    +E +   + M  R
Sbjct: 463 PAHDGYYVLLASIYAKAKKWDEVRKVRKLMSNR 495


>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g15510, chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 235/667 (35%), Positives = 360/667 (53%), Gaps = 27/667 (4%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +++HA  ++        + + L+++YV     ++  AR +FD++ +    + +N +I  Y
Sbjct: 218 KEIHAHVIRFGFESDVDVGNALITMYVK--CGDISNARMLFDKMPKRDR-ISWNAMISGY 274

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
             N    E L LF  + +  + PD  T+  V      L   + G+ +HG V K  FG D 
Sbjct: 275 FENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDI 334

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYV------KKGEVEVAMKLF 211
            + +SL+ MY+  G ++    VF  M+ KD+VSW  +I   V      K  E    M+L 
Sbjct: 335 SMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELE 394

Query: 212 DEMPDRDLFSWTCLVDGFSKC---GKVEIAREIFYRMPNRNLVSW----NAMINGYMKAG 264
             +PD        LV   S C   G +++   +        LVS     N++I+ Y K  
Sbjct: 395 GILPDE-----ITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCK 449

Query: 265 DVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS 324
            VD+A E+F ++  +++++W S+I G  +N R  EAL     M    + PN  TL+S LS
Sbjct: 450 CVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMK-ESMKPNSVTLISVLS 508

Query: 325 AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGH 384
           A A +  L +G+ +H++ ++ G   DG L   ++ MY +CG    AL  F +  KK V  
Sbjct: 509 ACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFNS-QKKDVTA 567

Query: 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMI 444
           W  ++ G    G A  A++LF+KM  + + P  ITFI +L ACS +G+V +G  YFN+M 
Sbjct: 568 WNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMK 627

Query: 445 NDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIG 504
           N Y + P ++HY C+VDIL R G L++A   I+ MP+RP+  IW +LL+  R H N ++G
Sbjct: 628 NKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALLNACRIHRNVELG 687

Query: 505 EYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGV 564
           E AA  + +    ++G Y++L N+YA  G WDKVS+VR +M++RG   DPG S +E +G 
Sbjct: 688 EIAAKRVFEKDNKSVGYYILLCNLYAGCGNWDKVSKVRSLMRERGLSADPGCSWVEIKGK 747

Query: 565 LHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSER 624
           +H F+ GD SH Q+ EI+  L    +K+K  G      +     E +  +      HSER
Sbjct: 748 VHAFLSGDNSHSQSKEINGVLDGFCSKMKENGF--GNLKSSFTSEIESSRADIFCGHSER 805

Query: 625 LAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCS 684
            AIAFGLIN     PI + KNL +C+ CH++ K +S I  REI VRD   +HHFK+G CS
Sbjct: 806 QAIAFGLINTAPGMPIWVXKNLYMCHSCHNMVKFISTIVRREISVRDVEEYHHFKDGVCS 865

Query: 685 CKD--FW 689
           C D  +W
Sbjct: 866 CGDEGYW 872



 Score =  197 bits (501), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 143/479 (29%), Positives = 242/479 (50%), Gaps = 25/479 (5%)

Query: 55  ISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL 114
           + + LLS++V     NL  A  +F ++ +   +  +N+L+  Y       EAL L+  +L
Sbjct: 134 LGNALLSMFV--RFGNLLDAWYVFGKMSER-DVFSWNVLVGGYAKAGCFDEALNLYHRML 190

Query: 115 DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEID 174
              + P+ +T P V+K  A +  I  GK+IH  V + GF  D  V ++L++MY K G+I 
Sbjct: 191 WAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDIS 250

Query: 175 LGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP----DRDLFSWTCLVDGFS 230
             R +FD M  +D +SWN +I GY + G     ++LF  M     D DL + T +     
Sbjct: 251 NARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACE 310

Query: 231 KCGKVEIAREIF-YRMPNR---NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNS 286
                 + R +  Y + +    ++   N++I  Y   G ++ A  +F  ME +D+++W +
Sbjct: 311 LLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTA 370

Query: 287 MIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNG 346
           MIA    +    +A+E  + M +  +LP++ TLVS LSA A +  L+ G  +H   +K G
Sbjct: 371 MIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTG 430

Query: 347 FVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFN 406
            V   ++   LI MYSKC  +++AL VFR IS K V  WT++I+GL ++  + +AL  F 
Sbjct: 431 LVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFR 490

Query: 407 KMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCL----VDI 462
           +M +  MKP ++T I VL+AC+  G +  G+      I+ + +   +   G L    +D+
Sbjct: 491 QM-KESMKPNSVTLISVLSACARIGALMRGKE-----IHAHALRTGVGFDGFLPNAILDM 544

Query: 463 LCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNL--IKVAPDTI 519
             R G    A +   S   + +   W  LL+G    G   +     + +  +++ PD I
Sbjct: 545 YVRCGRKVPALNQFNS--QKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEI 601



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/300 (29%), Positives = 150/300 (50%), Gaps = 7/300 (2%)

Query: 254 NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL 313
           NA+++ +++ G++  A  +F  M  RD+ +WN ++ GY   G F EAL L   ML  ++ 
Sbjct: 136 NALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIR 195

Query: 314 PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTV 373
           PN  T  S L   AG++ + +G+ +H+++++ GF  D  +G  LI MY KCG I +A  +
Sbjct: 196 PNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARML 255

Query: 374 FRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLV 433
           F  + K+    W AMI G   +G   + L+LF+ M  + + P  IT   V +AC      
Sbjct: 256 FDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNE 315

Query: 434 NDGRRYFNMMI-NDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLL 492
             GR     ++ +++G + ++ +   L+ +    G LEEA++    M  + + V W +++
Sbjct: 316 RLGRGVHGYVVKSEFGGDISMNN--SLIQMYSSLGRLEEAETVFSRMESK-DVVSWTAMI 372

Query: 493 SGARNHG--NKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGF 550
           +   +H    K +  Y    L  + PD I    VLS   A  G  D    + E+  K G 
Sbjct: 373 ASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSAC-ACIGHLDLGIRLHEIAIKTGL 431


>gi|302816284|ref|XP_002989821.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
 gi|300142387|gb|EFJ09088.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
          Length = 941

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 235/670 (35%), Positives = 371/670 (55%), Gaps = 20/670 (2%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           KE + + A  +++     + +++ L+SLY    I  L  A+ + + + Q   +V +N ++
Sbjct: 277 KEGEMIDARILESPFCSSTLLATSLISLYGQCGI--LDRAKGLLEHMYQR-DVVAWNAMV 333

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGF- 153
                N  + EA+ L   +       +  T   V++  A L A+ +G++IH  V   G  
Sbjct: 334 TACAQNGDNWEAIHLLRRMDMEGFGANKVTYLSVLEACANLEALSQGREIHARVLLCGLL 393

Query: 154 GFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDE 213
             +  V +S+++MY K G+ +    VF+AM  KD VSWN +I+  V   + + A++LF  
Sbjct: 394 QREVAVGNSVITMYGKCGQTEAAMSVFEAMPRKDDVSWNAVINASVGNSKFQDALELFHG 453

Query: 214 MPDRDLFSWT-CLVDGFSKCGKVE---IAREI------FYRMPNRNLVSWNAMINGYMKA 263
           M    L S    L+     CG +E   +AR+I           N   V  N+++N Y + 
Sbjct: 454 MELEGLRSNEFTLLSLLEACGGLEDLKLARQIHARAAAGGFGGNSTAVG-NSVVNMYARC 512

Query: 264 GDVDSACELFDDMEIRDLITWNSMIAGY--ELNGRFMEALELLETMLIGDVLPNDATLVS 321
           G +  A + FD +E + L+ W+ ++A Y    +G    A +  + M    + P + T VS
Sbjct: 513 GSLLDAKKAFDSLEEKGLVAWSIILAAYAQSKDGPGRRAFKFFQEMEAEGIKPGEVTFVS 572

Query: 322 ALSAVAGLAVLNKGRWMHSYIVKNGFVVDG-VLGTLLIQMYSKCGSIESALTVFRAISKK 380
           AL A A +A L  GR MH     +GFV    VLG  +I MY KCGS   A  VF  + +K
Sbjct: 573 ALDACAAMATLEHGRSMHRRAAASGFVETSLVLGNTIINMYGKCGSPSDAKLVFDQMPEK 632

Query: 381 KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYF 440
            +  W ++IV    +G A +AL    +M   G  P + T + +L   SHAGL+  G  +F
Sbjct: 633 CLISWNSLIVAYAHNGHALEALSSLQEMLLQGFDPDSGTSVSILYGLSHAGLLERGVEHF 692

Query: 441 NMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPM-RPNFVIWMSLLSGARNHG 499
              I D+G+EP+     CLVD+L R G+L+ A+  I + P  + + + WM+LL+  +++G
Sbjct: 693 RSSIQDHGLEPSSGQLKCLVDLLARKGFLDAAEELILASPACQADTIAWMTLLAACKSYG 752

Query: 500 NKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSI 559
           +   G   A  + ++ P   G +VVL+N+YA+ G+W   S +R+MM++   +K+PG S I
Sbjct: 753 DPQRGIRCAERVFELEPQHSGSFVVLANLYASVGRWSDASRIRKMMERMSVKKEPGCSWI 812

Query: 560 EHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELE 619
           E  G +HEF+ G+  HP+  EI   L ++  +++ AG+VPDTT V+  +E + +KE  L 
Sbjct: 813 ELSGSVHEFISGESKHPKIREICEDLEKLTLRMREAGYVPDTTNVVHDVE-EGDKEEILS 871

Query: 620 NHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFK 679
            HSERLAI FGL++ +    IR+VKNLRVC+DCH+ TK++S +  REI+VRD+SRFHHFK
Sbjct: 872 RHSERLAIVFGLMSTRPGETIRVVKNLRVCSDCHAATKIISSVVGREIVVRDSSRFHHFK 931

Query: 680 NGSCSCKDFW 689
           +G CSC DFW
Sbjct: 932 HGQCSCGDFW 941



 Score =  162 bits (409), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 101/345 (29%), Positives = 170/345 (49%), Gaps = 14/345 (4%)

Query: 166 MYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDRDL 219
           MY K   +     VFD +  K++ SW  ++  Y + G    A++LF  M      PD+ +
Sbjct: 1   MYGKCARVTDALMVFDGISAKNVFSWTMMMAAYSQNGHYREALELFTRMQWEGTRPDKVV 60

Query: 220 FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS----WNAMINGYMKAGDVDSACELFDD 275
           F     +D  +  G+++  R+I   +    L S     N+++N Y K  DV  A ++FD 
Sbjct: 61  F--VIALDACAASGELDHGRQIHSSVVGSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDG 118

Query: 276 MEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKG 335
           M +RD+++W +M+A Y  NG + +ALE L  M    V PN  T V+ +   A L +L+ G
Sbjct: 119 MLLRDVVSWTAMLAVYAQNGCWSQALECLSRMDAEGVKPNQVTFVTIVDVCAKLRLLDLG 178

Query: 336 RWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMH 395
           R +H  I+  G   DG+LG  L+ MY  CGS +   +VF  + +  V  WT MI G   +
Sbjct: 179 RKIHHRIINEGLEPDGILGNALVHMYGSCGSFDDMKSVFSRMGQSSVLLWTTMIAGCSQN 238

Query: 396 GMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEH 455
           G   + L +F KM   G+K   +T++ ++  C +   V +G      ++       T+  
Sbjct: 239 GQYEEGLLVFRKMDLEGVKANEVTYMSMVEVCRNLDAVKEGEMIDARILESPFCSSTLLA 298

Query: 456 YGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGN 500
              L+ +  + G L+ AK  +E M  R + V W ++++    +G+
Sbjct: 299 TS-LISLYGQCGILDRAKGLLEHMYQR-DVVAWNAMVTACAQNGD 341



 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 105/427 (24%), Positives = 200/427 (46%), Gaps = 10/427 (2%)

Query: 77  IFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLG 136
           +FD I    ++  + +++  Y  N    EAL LF  +      PD       +   A  G
Sbjct: 14  VFDGI-SAKNVFSWTMMMAAYSQNGHYREALELFTRMQWEGTRPDKVVFVIALDACAASG 72

Query: 137 AIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLID 196
            +  G+QIH  V   G   +  + +SLV+MY K  ++    +VFD M  +D+VSW  ++ 
Sbjct: 73  ELDHGRQIHSSVVGSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGMLLRDVVSWTAMLA 132

Query: 197 GYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNRNL-- 250
            Y + G    A++    M    +     ++  +VD  +K   +++ R+I +R+ N  L  
Sbjct: 133 VYAQNGCWSQALECLSRMDAEGVKPNQVTFVTIVDVCAKLRLLDLGRKIHHRIINEGLEP 192

Query: 251 --VSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETML 308
             +  NA+++ Y   G  D    +F  M    ++ W +MIAG   NG++ E L +   M 
Sbjct: 193 DGILGNALVHMYGSCGSFDDMKSVFSRMGQSSVLLWTTMIAGCSQNGQYEEGLLVFRKMD 252

Query: 309 IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIE 368
           +  V  N+ T +S +     L  + +G  + + I+++ F    +L T LI +Y +CG ++
Sbjct: 253 LEGVKANEVTYMSMVEVCRNLDAVKEGEMIDARILESPFCSSTLLATSLISLYGQCGILD 312

Query: 369 SALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACS 428
            A  +   + ++ V  W AM+     +G   +A+ L  +M   G     +T++ VL AC+
Sbjct: 313 RAKGLLEHMYQRDVVAWNAMVTACAQNGDNWEAIHLLRRMDMEGFGANKVTYLSVLEACA 372

Query: 429 HAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIW 488
           +   ++ GR     ++    ++  +     ++ +  + G  E A S  E+MP R + V W
Sbjct: 373 NLEALSQGREIHARVLLCGLLQREVAVGNSVITMYGKCGQTEAAMSVFEAMP-RKDDVSW 431

Query: 489 MSLLSGA 495
            ++++ +
Sbjct: 432 NAVINAS 438


>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 592

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 217/562 (38%), Positives = 341/562 (60%), Gaps = 11/562 (1%)

Query: 138 IKEGKQIHGLVFKLGFGFDKFVLSSLVSM-YAKFGEIDLGRRVFDAMDDKDLVSWNCLID 196
           +K  +QIH  +   G G  + +++ L+S  YA    I   RR+F ++   D   ++ LI 
Sbjct: 32  LKPLQQIHARIIITGLGRTRSLITKLLSFAYAAASPISYTRRLFFSIPKPDTFLFHSLIT 91

Query: 197 GYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMP----NR 248
              K    + ++  +  M   ++    ++++ ++   +      I   I   +       
Sbjct: 92  LTSKFSFPQESLLCYRRMLLANISSSNYTFSAVIKSSADLTAFSIGETIHCHVYICGYGL 151

Query: 249 NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETML 308
           +     A+++ Y K+G V  A ++FD M  + ++ WNSMI+GYE NG   EA+EL   M 
Sbjct: 152 DAYVQAALVSFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAVELFFLMQ 211

Query: 309 IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIE 368
              V P+ +T VS LSA A +  +  G W+H YI +N F ++ VLGT L+ MYS+CG++ 
Sbjct: 212 DLGVKPDSSTFVSLLSACAQVGAIGLGFWVHEYIARNCFDLNVVLGTALMNMYSRCGNVS 271

Query: 369 SALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACS 428
            A  VF ++ +K +  WTAMI G GMHG  +QA++LFN+M   G +P  +TF+ VL+AC+
Sbjct: 272 KAREVFDSMEEKNIVAWTAMISGYGMHGHGSQAIELFNEMSFDGPRPNNVTFVAVLSACA 331

Query: 429 HAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIE-SMPMRPNFVI 487
           HAGLV++GR+ F  M  +YG+ P++EH  C+VD+L R G+L EA   I+ + P  P   +
Sbjct: 332 HAGLVDEGRQIFTTMKQEYGLVPSVEHQVCMVDMLGRAGHLNEAYQFIKNTSPKEPAPAV 391

Query: 488 WMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547
           W ++L   + H N D+G   A +L+ + P+  G YV+LSNIYA AG+ D+V ++R +M +
Sbjct: 392 WTAMLGACKMHKNFDLGVEVAEHLLSIEPENPGHYVMLSNIYALAGRMDRVEKIRNIMIR 451

Query: 548 RGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLC 607
              +K+ G S+I+    ++ F +GDKSHP+T++I+  L E+ ++ + AG++P +  V+  
Sbjct: 452 NRLKKEVGYSTIDVDHKVYLFSMGDKSHPKTNQIYLYLDELMSRCREAGYIPASESVMHE 511

Query: 608 IEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREI 667
           +E+++ + A L  HSE+LAIAFGL+   S   IRIVKNLR+C DCH+  K +S I NREI
Sbjct: 512 VEEEEREYA-LRYHSEKLAIAFGLLKTGSGVAIRIVKNLRMCEDCHTAIKYISIIANREI 570

Query: 668 IVRDNSRFHHFKNGSCSCKDFW 689
            VRD  RFHHFK+GSCSC+D+W
Sbjct: 571 NVRDRLRFHHFKDGSCSCQDYW 592



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 115/376 (30%), Positives = 192/376 (51%), Gaps = 21/376 (5%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           K  QQ+HA  + T L     + ++LLS +     + + Y R +F  I + P   L++ LI
Sbjct: 33  KPLQQIHARIIITGLGRTRSLITKLLS-FAYAAASPISYTRRLFFSIPK-PDTFLFHSLI 90

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
                     E+L  +  +L   +   N+T   VIK +A L A   G+ IH  V+  G+G
Sbjct: 91  TLTSKFSFPQESLLCYRRMLLANISSSNYTFSAVIKSSADLTAFSIGETIHCHVYICGYG 150

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
            D +V ++LVS YAK G + + R+VFD M +K +V+WN +I GY + G  + A++LF  M
Sbjct: 151 LDAYVQAALVSFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAVELFFLM 210

Query: 215 PD----RDLFSWTCLVDGFSKCGKV--------EIAREIFYRMPNRNLVSWNAMINGYMK 262
            D     D  ++  L+   ++ G +         IAR  F    + N+V   A++N Y +
Sbjct: 211 QDLGVKPDSSTFVSLLSACAQVGAIGLGFWVHEYIARNCF----DLNVVLGTALMNMYSR 266

Query: 263 AGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSA 322
            G+V  A E+FD ME ++++ W +MI+GY ++G   +A+EL   M      PN+ T V+ 
Sbjct: 267 CGNVSKAREVFDSMEEKNIVAWTAMISGYGMHGHGSQAIELFNEMSFDGPRPNNVTFVAV 326

Query: 323 LSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTL-LIQMYSKCGSIESALTVFRAISKKK 381
           LSA A   ++++GR + + + +   +V  V   + ++ M  + G +  A    +  S K+
Sbjct: 327 LSACAHAGLVDEGRQIFTTMKQEYGLVPSVEHQVCMVDMLGRAGHLNEAYQFIKNTSPKE 386

Query: 382 VGH--WTAMIVGLGMH 395
                WTAM+    MH
Sbjct: 387 PAPAVWTAMLGACKMH 402


>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Glycine max]
          Length = 882

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 233/666 (34%), Positives = 360/666 (54%), Gaps = 31/666 (4%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +++H   ++        + + L+++YV     +++ AR +FD+ + +   + +N +I  Y
Sbjct: 227 REIHVHVIRYGFESDVDVVNALITMYVK--CGDVNTARLVFDK-MPNRDRISWNAMISGY 283

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
             N    E L LF  ++   + PD  T+  VI     LG  + G+QIHG V +  FG D 
Sbjct: 284 FENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDDRLGRQIHGYVLRTEFGRDP 343

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGY------VKKGEVEVAMKLF 211
            + +SL+ MY+  G I+    VF   + +DLVSW  +I GY       K  E    M+  
Sbjct: 344 SIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGYENCLMPQKALETYKMMEAE 403

Query: 212 DEMPDRD-----LFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSW----NAMINGYMK 262
             MPD       L + +CL +        E+A++       + LVS+    N++I+ Y K
Sbjct: 404 GIMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQ-------KGLVSYSIVANSLIDMYAK 456

Query: 263 AGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSA 322
              +D A E+F     +++++W S+I G  +N R  EAL     M I  + PN  TLV  
Sbjct: 457 CKCIDKALEIFHSTLEKNIVSWTSIILGLRINNRCFEALFFFREM-IRRLKPNSVTLVCV 515

Query: 323 LSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKV 382
           LSA A +  L  G+ +H++ ++ G   DG +   ++ MY +CG +E A   F ++  + V
Sbjct: 516 LSACARIGALTCGKEIHAHALRTGVSFDGFMPNAILDMYVRCGRMEYAWKQFFSVDHE-V 574

Query: 383 GHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNM 442
             W  ++ G    G    A +LF +M    + P  +TFI +L ACS +G+V +G  YFN 
Sbjct: 575 TSWNILLTGYAERGKGAHATELFQRMVESNVSPNEVTFISILCACSRSGMVAEGLEYFNS 634

Query: 443 MINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKD 502
           M   Y I P ++HY C+VD+L R+G LEEA   I+ MPM+P+  +W +LL+  R H + +
Sbjct: 635 MKYKYSIMPNLKHYACVVDLLGRSGKLEEAYEFIQKMPMKPDPAVWGALLNSCRIHHHVE 694

Query: 503 IGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHR 562
           +GE AA N+ +    ++G Y++LSN+YA  G+WDKV+EVR+MM++ G   DPG S +E +
Sbjct: 695 LGELAAENIFQDDTTSVGYYILLSNLYADNGKWDKVAEVRKMMRQNGLIVDPGCSWVEVK 754

Query: 563 GVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAG-HVPDTTQVLLCIEDQKEKEAELENH 621
           G +H F+  D  HPQ  EI++ L     K+K AG   P+++ + +    +  K      H
Sbjct: 755 GTVHAFLSSDNFHPQIKEINALLERFYKKMKEAGVEGPESSHMDIM---EASKADIFCGH 811

Query: 622 SERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNG 681
           SERLAI FGLIN     PI + KNL +C  CH++ K +S    REI VRD  +FHHFK G
Sbjct: 812 SERLAIVFGLINSGPGMPIWVTKNLYMCQSCHNIVKFISREVRREISVRDAEQFHHFKGG 871

Query: 682 SCSCKD 687
            CSC D
Sbjct: 872 ICSCTD 877



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 115/399 (28%), Positives = 182/399 (45%), Gaps = 54/399 (13%)

Query: 176 GRRVFD----AMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSK 231
           G RV+     +M    L   N L+  +V+ G +  A  +F  M  R+LFSW  LV G++K
Sbjct: 125 GSRVYSYVSISMSHLSLQLGNALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAK 184

Query: 232 CGKVEIAREIFYR----------------------MPN-----------------RNLVS 252
            G  + A ++++R                      MPN                  ++  
Sbjct: 185 AGLFDEALDLYHRMLWVGVKPDVYTFPCVLRTCGGMPNLVRGREIHVHVIRYGFESDVDV 244

Query: 253 WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDV 312
            NA+I  Y+K GDV++A  +FD M  RD I+WN+MI+GY  NG  +E L L   M+   V
Sbjct: 245 VNALITMYVKCGDVNTARLVFDKMPNRDRISWNAMISGYFENGVCLEGLRLFGMMIKYPV 304

Query: 313 LPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALT 372
            P+  T+ S ++A   L     GR +H Y+++  F  D  +   LI MYS  G IE A T
Sbjct: 305 DPDLMTMTSVITACELLGDDRLGRQIHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAET 364

Query: 373 VFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGL 432
           VF     + +  WTAMI G     M  +AL+ +  M   G+ P  IT   VL+ACS    
Sbjct: 365 VFSRTECRDLVSWTAMISGYENCLMPQKALETYKMMEAEGIMPDEITIAIVLSACSCLCN 424

Query: 433 VNDGRRYFNMMINDYGIEPTIEHYG----CLVDILCRTGYLEEAKSTIESMPMRPNFVIW 488
           ++ G     M +++   +  +  Y      L+D+  +   +++A     S  +  N V W
Sbjct: 425 LDMG-----MNLHEVAKQKGLVSYSIVANSLIDMYAKCKCIDKALEIFHST-LEKNIVSW 478

Query: 489 MSLLSGARNHGNKDIGEYAANNLI-KVAPDTIGCYVVLS 526
            S++ G R +       +    +I ++ P+++    VLS
Sbjct: 479 TSIILGLRINNRCFEALFFFREMIRRLKPNSVTLVCVLS 517



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/300 (29%), Positives = 146/300 (48%), Gaps = 7/300 (2%)

Query: 254 NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL 313
           NA+++ +++ G++  A  +F  ME R+L +WN ++ GY   G F EAL+L   ML   V 
Sbjct: 145 NALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVK 204

Query: 314 PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTV 373
           P+  T    L    G+  L +GR +H ++++ GF  D  +   LI MY KCG + +A  V
Sbjct: 205 PDVYTFPCVLRTCGGMPNLVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDVNTARLV 264

Query: 374 FRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLV 433
           F  +  +    W AMI G   +G+  + L LF  M +  + P  +T   V+ AC   G  
Sbjct: 265 FDKMPNRDRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDD 324

Query: 434 NDGRRYFNMMI-NDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLL 492
             GR+    ++  ++G +P+I  +  L+ +    G +EEA++       R + V W +++
Sbjct: 325 RLGRQIHGYVLRTEFGRDPSI--HNSLIPMYSSVGLIEEAETVFSRTECR-DLVSWTAMI 381

Query: 493 SGARN--HGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGF 550
           SG  N     K +  Y       + PD I   +VLS   +     D    + E+ K++G 
Sbjct: 382 SGYENCLMPQKALETYKMMEAEGIMPDEITIAIVLSAC-SCLCNLDMGMNLHEVAKQKGL 440


>gi|357141422|ref|XP_003572219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Brachypodium distachyon]
          Length = 571

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 199/437 (45%), Positives = 282/437 (64%), Gaps = 7/437 (1%)

Query: 255 AMINGYMKAGDVDSACELFDDMEI--RDLITWNSMIAGYELNGRFMEALELLETMLIGDV 312
           +M++ Y  AGD+ +A E+FD      RDL  WNS++  Y   G +   L L   M+  D 
Sbjct: 140 SMLSFYAAAGDLPAAREVFDRSPPNQRDLALWNSLLHAYLSQGLYTHVLRLFRQMVATD- 198

Query: 313 LPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALT 372
              + TL++ +SA + L  L+ GRW H+Y  +        LGT L+ MY +CG +ESA +
Sbjct: 199 ---EVTLLAVVSACSHLGALDTGRWAHAYHARTCRNTTRNLGTALLNMYMRCGDVESAWS 255

Query: 373 VFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGL 432
           VF  +  K V  W+ MI GL ++G+   AL LF +M  +G+ P +IT   VL+ACSHAG+
Sbjct: 256 VFHEMLDKDVRTWSVMIAGLAVNGLPRDALKLFAEMKNIGVDPDSITMTAVLSACSHAGM 315

Query: 433 VNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLL 492
           V++G+ + + M  +Y ++PTIEHYGC+VD+L R G LEEA + IE++P + +  +W +LL
Sbjct: 316 VDEGKMFLHCMPIEYHLQPTIEHYGCVVDLLGRAGQLEEALALIETVPFKADVALWGALL 375

Query: 493 SGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRK 552
              R H N D+G+ AA  ++K+ P   G  V LSN YAAAG+WD V EVR  MK+    K
Sbjct: 376 VACRAHKNVDMGQMAAMEILKLDPHHAGACVFLSNAYAAAGKWDLVQEVRSSMKEHRIYK 435

Query: 553 DPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQK 612
            PGSS +E  GV++EF+ GD SHPQ+D I++ L E+   L   GH P T +V   I D++
Sbjct: 436 PPGSSIVELDGVVYEFLSGDHSHPQSDRIYAMLDEVCKTLSLKGHRPSTKEVAFDI-DEE 494

Query: 613 EKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDN 672
           +KE  +  HSE+LA+A GLI+ +  + IRIVKNLR+C DCHSV K++S +Y+R I+VRD 
Sbjct: 495 DKEVCISQHSEKLALALGLISTRRGAVIRIVKNLRICEDCHSVMKIVSEVYDRVIVVRDR 554

Query: 673 SRFHHFKNGSCSCKDFW 689
           +RFHHFKNGSCSC D+W
Sbjct: 555 NRFHHFKNGSCSCLDYW 571



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 94/330 (28%), Positives = 160/330 (48%), Gaps = 20/330 (6%)

Query: 84  HPSLVLYNLLIKCYVFNQRSHEALTLFCD-LLDRFLLPDNFTLPCVIKGAARL------G 136
           HP+   YN  I+      R H A+ L+   LL+    P+N+T P ++   ARL       
Sbjct: 54  HPTTFSYNTTIRSLAHGPRPHLAVALYRSMLLNPLSNPNNYTYPPLLAACARLLPAHPPR 113

Query: 137 AIKEGKQIHGLVFKLGF-GFDKFVLSSLVSMYAKFGEIDLGRRVFD--AMDDKDLVSWNC 193
               G  +H  +F+ G    D+F+ +S++S YA  G++   R VFD    + +DL  WN 
Sbjct: 114 EAAAGTAVHASLFRRGLESRDRFISASMLSFYAAAGDLPAAREVFDRSPPNQRDLALWNS 173

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFY------RMPN 247
           L+  Y+ +G     ++LF +M   D  +   +V   S  G ++  R          R   
Sbjct: 174 LLHAYLSQGLYTHVLRLFRQMVATDEVTLLAVVSACSHLGALDTGRWAHAYHARTCRNTT 233

Query: 248 RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETM 307
           RNL +  A++N YM+ GDV+SA  +F +M  +D+ TW+ MIAG  +NG   +AL+L   M
Sbjct: 234 RNLGT--ALLNMYMRCGDVESAWSVFHEMLDKDVRTWSVMIAGLAVNGLPRDALKLFAEM 291

Query: 308 LIGDVLPNDATLVSALSAVAGLAVLNKGR-WMHSYIVKNGFVVDGVLGTLLIQMYSKCGS 366
               V P+  T+ + LSA +   ++++G+ ++H   ++            ++ +  + G 
Sbjct: 292 KNIGVDPDSITMTAVLSACSHAGMVDEGKMFLHCMPIEYHLQPTIEHYGCVVDLLGRAGQ 351

Query: 367 IESALTVFRAIS-KKKVGHWTAMIVGLGMH 395
           +E AL +   +  K  V  W A++V    H
Sbjct: 352 LEEALALIETVPFKADVALWGALLVACRAH 381



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 121/266 (45%), Gaps = 21/266 (7%)

Query: 55  ISSRLLSLYVDPHINNLHYARSIFDRILQHP-SLVLYNLLIKCYVFNQRSHEALTLFCDL 113
           IS+ +LS Y      +L  AR +FDR   +   L L+N L+  Y+        L LF   
Sbjct: 137 ISASMLSFYAA--AGDLPAAREVFDRSPPNQRDLALWNSLLHAYLSQGLYTHVLRLF--- 191

Query: 114 LDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEI 173
             + +  D  TL  V+   + LGA+  G+  H    +      + + ++L++MY + G++
Sbjct: 192 -RQMVATDEVTLLAVVSACSHLGALDTGRWAHAYHARTCRNTTRNLGTALLNMYMRCGDV 250

Query: 174 DLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP----DRDLFSWTCLVDGF 229
           +    VF  M DKD+ +W+ +I G    G    A+KLF EM     D D  + T ++   
Sbjct: 251 ESAWSVFHEMLDKDVRTWSVMIAGLAVNGLPRDALKLFAEMKNIGVDPDSITMTAVLSAC 310

Query: 230 SKCGKVEIAREIFYRMP-----NRNLVSWNAMINGYMKAGDVDSACELFDDMEIR-DLIT 283
           S  G V+  +   + MP        +  +  +++   +AG ++ A  L + +  + D+  
Sbjct: 311 SHAGMVDEGKMFLHCMPIEYHLQPTIEHYGCVVDLLGRAGQLEEALALIETVPFKADVAL 370

Query: 284 WNSMIAGYELNGRF----MEALELLE 305
           W +++     +       M A+E+L+
Sbjct: 371 WGALLVACRAHKNVDMGQMAAMEILK 396


>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
          Length = 607

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 223/559 (39%), Positives = 328/559 (58%), Gaps = 15/559 (2%)

Query: 144 IHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGE 203
           IH  + + G   D F++  L+   +K   ID   R+F    + ++  +  LIDG+V  G 
Sbjct: 51  IHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGN 110

Query: 204 VEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIA----REIFYR-----MPNRNLVSWN 254
              A++L+  M    +     L+    K    ++A    RE+  R     + +  LV   
Sbjct: 111 YFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLR 170

Query: 255 AMINGYMKAGDVDSACELFDDME----IRDLITWNSMIAGYELNGRFMEALELLETMLIG 310
            M   Y K G++  A  +F++M      +D + W +MI G+  N     ALE    M   
Sbjct: 171 IM-ELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGE 229

Query: 311 DVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESA 370
           +V PN+ T+V  LSA + L  L  GRW+HSY+ K    ++  +G  LI MYS+CGSI+ A
Sbjct: 230 NVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEA 289

Query: 371 LTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHA 430
            TVF  +  + V  +  MI GL M+G + QA++LF  M    ++PT +TF+GVLNACSH 
Sbjct: 290 QTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHG 349

Query: 431 GLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMS 490
           GLV+ G + F+ M  DYG+EP IEHYGC+VD+L R G LEEA   I +M M P+ ++  +
Sbjct: 350 GLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGT 409

Query: 491 LLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGF 550
           LLS  + H N ++GE  A  L        G YV+LS++YA++G+W + ++VR  MK+ G 
Sbjct: 410 LLSACKMHKNLELGEQVAKVLEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGM 469

Query: 551 RKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIED 610
           +K+PG SSIE    +HEF++GD  HP+ + I+ KL E+   L+  G+ P+   VL  IED
Sbjct: 470 QKEPGCSSIEVNNEIHEFLLGDLRHPRKERIYEKLEELNRLLRLEGYHPEKEVVLQDIED 529

Query: 611 QKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVR 670
             EKE  L  HSERLAI +GLI+ +  + IR++KNLRVC DCHS  KL++ I  R+++VR
Sbjct: 530 -GEKEWALAIHSERLAICYGLISTEPCTVIRVMKNLRVCYDCHSAIKLIAKITRRKVVVR 588

Query: 671 DNSRFHHFKNGSCSCKDFW 689
           D +RFH+F+NG+CSC D+W
Sbjct: 589 DRNRFHYFENGACSCGDYW 607



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 107/374 (28%), Positives = 182/374 (48%), Gaps = 56/374 (14%)

Query: 71  LHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIK 130
           + YA  IF +   +P++ LY  LI  +V +    +A+ L+  +L   +LPDN+ +  ++K
Sbjct: 80  IDYASRIF-QYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILK 138

Query: 131 GAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD----K 186
                 A++EG+++H    KLG   ++ V   ++ +Y K GE+   RRVF+ M +    K
Sbjct: 139 ACGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAK 198

Query: 187 DLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIF 242
           D V W  +IDG+V+  E+  A++ F  M   ++    F+  C++   S+ G +EI R + 
Sbjct: 199 DTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVH 258

Query: 243 YRMP----NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFM 298
             M       NL   NA+IN Y + G +D A  +FD+M+ RD+IT+N+MI+G  +NG+  
Sbjct: 259 SYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSR 318

Query: 299 EALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLI 358
           +A+EL   M+   + P + T V  L+A +           H  +V  GF           
Sbjct: 319 QAIELFRVMIGRRLRPTNVTFVGVLNACS-----------HGGLVDFGF----------- 356

Query: 359 QMYSKCGSIESALTVFRAISK-----KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGM 413
                         +F ++++      ++ H+  M+  LG  G   +A DL      M M
Sbjct: 357 -------------KIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRT---MKM 400

Query: 414 KPTAITFIGVLNAC 427
            P  I    +L+AC
Sbjct: 401 TPDHIMLGTLLSAC 414



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/347 (23%), Positives = 165/347 (47%), Gaps = 27/347 (7%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQH---PSLVLYN 91
           +E +++H+ ++K  L  +  +  R++ LY       L  AR +F+ + +       V + 
Sbjct: 147 REGREVHSRALKLGLSSNRLVRLRIMELY--GKCGELGDARRVFEEMPEDVVAKDTVCWT 204

Query: 92  LLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKL 151
            +I  +V N+  + AL  F  +    + P+ FT+ CV+   ++LGA++ G+ +H  + K 
Sbjct: 205 AMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKF 264

Query: 152 GFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLF 211
               + FV ++L++MY++ G ID  + VFD M D+D++++N +I G    G+   A++LF
Sbjct: 265 EIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELF 324

Query: 212 DEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMP-----NRNLVSWNAMINGYMK 262
             M  R L     ++  +++  S  G V+   +IF+ M         +  +  M++   +
Sbjct: 325 RVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGR 384

Query: 263 AGDVDSACELFDDMEIR-DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVS 321
            G ++ A +L   M++  D I   ++++  +++    + LEL E   +  VL +     S
Sbjct: 385 VGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMH----KNLELGEQ--VAKVLEDRGQADS 438

Query: 322 ALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIE 368
               +      + G+W  +  V+      G      +Q    C SIE
Sbjct: 439 GTYVLLSHVYASSGKWKEAAQVRAKMKEAG------MQKEPGCSSIE 479


>gi|356559204|ref|XP_003547890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 619

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/611 (35%), Positives = 342/611 (55%), Gaps = 20/611 (3%)

Query: 7   QHSSPIHALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDP 66
           Q S P+H + +        ++L+   T     Q+ A  V   L  +  ++   ++     
Sbjct: 12  QTSKPLHRVVEDK----FISLLRTCGTCVRLHQIQAQIVTHGLEGNDYVTPSFITACA-- 65

Query: 67  HINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLP 126
            +  +  AR +FD+  Q P+   +N + + Y       + + LF  +      P+ FT P
Sbjct: 66  RLGGIRRARRVFDKTAQ-PNGATWNAMFRGYAQANCHLDVVVLFARMHRAGASPNCFTFP 124

Query: 127 CVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGR--RVFDAMD 184
            V+K  A   A KEG+++H +V K GF  + FV  +L+ MY+  G + +    +VF  M 
Sbjct: 125 MVVKSCATANAAKEGEEVHCVVAKRGFKSNTFVGCALIHMYSLRGGVFVADAYKVFAEMR 184

Query: 185 DKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYR 244
           DK++ +W  ++  +V   ++  A +LFD  P RD+  W  +V G+ + G +  ARE+F R
Sbjct: 185 DKNVFAWTAIVAAHVACRDMVSARRLFDLAPQRDVVLWNVVVSGYIELGDMVAARELFDR 244

Query: 245 MPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELL 304
           MP+R+++SWN +++GY   G+V+S  +LF++M +R++ +WN +I GY  NG F EALE  
Sbjct: 245 MPDRDVMSWNTVLSGYATNGEVESFVKLFEEMPVRNVYSWNGLIGGYVRNGLFKEALECF 304

Query: 305 ETMLI-----------GDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVL 353
           + ML+           G V+PND T+V+ L+A + L  L  G+W+H Y    G+  +  +
Sbjct: 305 KRMLVLVEGEGKEGSDGVVVPNDYTVVAVLTACSRLGDLEMGKWVHVYAESIGYKGNLFV 364

Query: 354 GTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGM 413
           G  LI MY+KCG IE AL VF  +  K +  W  +I GL MHG    AL LF +M R G 
Sbjct: 365 GNALIDMYAKCGVIEKALDVFDGLDVKDIITWNTIINGLAMHGHVADALSLFERMKRAGE 424

Query: 414 KPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAK 473
           +P  +TF+G+L+AC+H GLV +G  +F  M++DY I P IEHYGC+VD+L R G +++A 
Sbjct: 425 RPDGVTFVGILSACTHMGLVRNGLLHFQSMVDDYSIVPQIEHYGCMVDLLGRAGLIDKAV 484

Query: 474 STIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAG 533
             +  MPM P+ VIW +LL   R + N ++ E A   LI++ P+  G +V++SNIY   G
Sbjct: 485 DIVRKMPMEPDAVIWAALLGACRMYKNVEMAELALQRLIELEPNNPGNFVMVSNIYKDLG 544

Query: 534 QWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLK 593
           +   V+ ++  M+  GFRK PG S I     + EF   D+ HP+TD I+  L  +   L+
Sbjct: 545 RSQDVARLKVAMRDTGFRKVPGCSVIGCNDSMVEFYSLDERHPETDSIYRALQGLTILLR 604

Query: 594 AAGHVPDTTQV 604
           + G+VP+   V
Sbjct: 605 SHGYVPNLVDV 615


>gi|414872095|tpg|DAA50652.1| TPA: hypothetical protein ZEAMMB73_776700 [Zea mays]
          Length = 647

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 214/589 (36%), Positives = 332/589 (56%), Gaps = 44/589 (7%)

Query: 142 KQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKK 201
           +Q+H      G   D+F  + L+  YA  G+    R +F+ +  ++++SWN LI GYVK 
Sbjct: 62  RQLHAFAATSGAAADRFTANHLLLAYADLGDFPTARGLFERIPKRNVMSWNILIGGYVKN 121

Query: 202 GEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMP--------------- 246
           G++E A KLFDEMP R++ +W  +V G +  G  E +   F+ M                
Sbjct: 122 GDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQPDEYGLGSLF 181

Query: 247 ------------------------NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLI 282
                                   +R++   +++ + YM+ G +         +   +++
Sbjct: 182 RCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAALRALPSLNIV 241

Query: 283 TWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYI 342
           + N+ I+G   NG    ALE    M    V  N  T VSA+++ + LA L +G+ +H+  
Sbjct: 242 SCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAALAQGQQIHALA 301

Query: 343 VKNGFVVDGVLG--TLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQ 400
           +K G  VD V+   T L+ MYS+CG +  +  V    S   +   +AMI   G HG   +
Sbjct: 302 IKTG--VDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISAYGFHGHGQK 359

Query: 401 ALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLV 460
           A+ LF +M   G +P  +TF+ +L ACSH+GL ++G   F +M   YG++P+++HY C+V
Sbjct: 360 AVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQPSVKHYTCIV 419

Query: 461 DILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIG 520
           D+L R+G L EA+  I SMP++P+ VIW +LLS  +     D+ E  A  +I++ P    
Sbjct: 420 DLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSACKTQKKFDMAERIAERVIELDPHDSA 479

Query: 521 CYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDE 580
            YV+LSNI A + +W+ VS+VRE M+++  RK+PG S +E +G +H+F  GD+SH +  E
Sbjct: 480 SYVLLSNIRATSSRWEDVSKVRETMREQNVRKEPGVSWVELKGQIHQFCTGDESHSRQRE 539

Query: 581 IHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPI 640
           I   L EM  +++  G+ PD + V   +ED+ EKE  L +HSE+LAIAF  +++    PI
Sbjct: 540 IVECLEEMMTRIRQCGYAPDMSMVFHDMEDE-EKEVSLAHHSEKLAIAFAFLSLPEGVPI 598

Query: 641 RIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           R++KNLRVC+DCH   KL+S +  REI+VRD SRFHHFK+G CSC D+W
Sbjct: 599 RVMKNLRVCDDCHVAIKLMSKVIGREIVVRDVSRFHHFKDGKCSCGDYW 647



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 77/367 (20%), Positives = 155/367 (42%), Gaps = 42/367 (11%)

Query: 69  NNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCV 128
            +L  AR +FD +    ++  +N ++     +  + E+L  F  +    + PD + L  +
Sbjct: 122 GDLETARKLFDEMPAR-NVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQPDEYGLGSL 180

Query: 129 IKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDL 188
            +  A L  +  G+Q+H  V + G   D  V SSL  MY + G +  G     A+   ++
Sbjct: 181 FRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAALRALPSLNI 240

Query: 189 VSWNCLIDGYVKKGEVEVAMKLFDEMP----DRDLFSWTCLVDGFSKCGKVEIAREI--- 241
           VS N  I G  + G+ E A++ F  M     + +  ++   V   S    +   ++I   
Sbjct: 241 VSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAALAQGQQIHAL 300

Query: 242 -FYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEA 300
                 ++ +    ++++ Y + G +  +  +  +    DL+  ++MI+ Y  +G   +A
Sbjct: 301 AIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISAYGFHGHGQKA 360

Query: 301 LELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQM 360
           + L + M+     PN+ T ++ L A +   + ++G         N F        L+ + 
Sbjct: 361 VGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEG--------MNCF-------ELMTKT 405

Query: 361 YSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITF 420
           Y                 +  V H+T ++  LG  G   +A DL   +  M ++P  + +
Sbjct: 406 YGL---------------QPSVKHYTCIVDLLGRSGCLNEAEDL---ILSMPVQPDGVIW 447

Query: 421 IGVLNAC 427
             +L+AC
Sbjct: 448 KTLLSAC 454



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 131/312 (41%), Gaps = 23/312 (7%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +Q+HA  V++ L     + S L  +Y+      L    +   R L   ++V  N  I   
Sbjct: 194 RQVHAYVVRSGLDRDMCVGSSLAHMYM--RCGFLRDGEAAL-RALPSLNIVSCNTTISGR 250

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
             N  +  AL  FC +    +  +  T    +   + L A+ +G+QIH L  K G     
Sbjct: 251 TQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAALAQGQQIHALAIKTGVDKVV 310

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM--- 214
            V++SLV MY++ G +    RV       DLV  + +I  Y   G  + A+ LF +M   
Sbjct: 311 PVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISAYGFHGHGQKAVGLFKQMMAA 370

Query: 215 ---PDRDLF---SWTCLVDGFSKCGK--VEIAREIFYRMPNRNLVSWNAMINGYMKAGDV 266
              P+   F    + C   G    G    E+  + +   P  ++  +  +++   ++G +
Sbjct: 371 GAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQP--SVKHYTCIVDLLGRSGCL 428

Query: 267 DSACELFDDMEIR-DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSA 325
           + A +L   M ++ D + W ++++  +   +F  A  + E ++  D  P+D+     LS 
Sbjct: 429 NEAEDLILSMPVQPDGVIWKTLLSACKTQKKFDMAERIAERVIELD--PHDSASYVLLSN 486

Query: 326 VAGLAVLNKGRW 337
           +         RW
Sbjct: 487 IRA----TSSRW 494


>gi|356495778|ref|XP_003516750.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13270,
           chloroplastic-like [Glycine max]
          Length = 765

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 221/643 (34%), Positives = 355/643 (55%), Gaps = 13/643 (2%)

Query: 55  ISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL 114
           I + +L +Y D    +   A   FD+I+    L  ++ +I  Y    R  EA+ LF  +L
Sbjct: 128 IDNCILKMYCD--CKSFTSAERFFDKIVDQ-DLSSWSTIISAYTEEGRIDEAVRLFLRML 184

Query: 115 DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEID 174
           D  + P++     +I        +  GKQIH  + ++GF  +  + + + +MY K G +D
Sbjct: 185 DLGITPNSSIFSTLIMSFTDPSMLDLGKQIHSQLIRIGFAANISIETLISNMYVKCGWLD 244

Query: 175 LGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM----PDRDLFSWTCLVDGFS 230
                 + M  K+ V+   L+ GY K      A+ LF +M     + D F ++ ++   +
Sbjct: 245 GAEVATNKMTRKNAVACTGLMVGYTKAARNRDALLLFGKMISEGVELDGFVFSIILKACA 304

Query: 231 KCGKVEIAREIFYRMPNRNLVS----WNAMINGYMKAGDVDSACELFDDMEIRDLITWNS 286
             G +   ++I        L S       +++ Y+K    ++A + F+ +   +  +W++
Sbjct: 305 ALGDLYTGKQIHSYCIKLGLESEVSVGTPLVDFYVKCARFEAARQAFESIHEPNDFSWSA 364

Query: 287 MIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNG 346
           +IAGY  +G+F  ALE+ + +    VL N     +   A + ++ L  G  +H+  +K G
Sbjct: 365 LIAGYCQSGQFDRALEVFKAIRSKGVLLNSFIYTNIFQACSAVSDLICGAQIHADAIKKG 424

Query: 347 FVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFN 406
            V      + +I MYSKCG ++ A   F  I K     WTA+I     HG A +AL LF 
Sbjct: 425 LVAYLSGESAMISMYSKCGQVDYAHQAFLTIDKPDTVAWTAIICAHAYHGKAFEALRLFK 484

Query: 407 KMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRT 466
           +M   G++P A+TFIG+LNACSH+GLV +G++  + M ++YG+ PTI+HY C++D+  R 
Sbjct: 485 EMQGSGVRPNAVTFIGLLNACSHSGLVKEGKKILDSMSDEYGVNPTIDHYNCMIDVYSRA 544

Query: 467 GYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLS 526
           G L+EA   I S+P  P+ + W SLL G  +H N +IG  AA+N+ ++ P     YV++ 
Sbjct: 545 GLLQEALEVIRSLPFEPDVMSWKSLLGGCWSHRNLEIGMIAADNIFRLDPLDSATYVIMF 604

Query: 527 NIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLS 586
           N+YA AG+WD+ ++ R+MM +R  RK+   S I  +G +H FVVGD+ HPQT++I+SKL 
Sbjct: 605 NLYALAGKWDEAAQFRKMMAERNLRKEVSCSWIIVKGKVHRFVVGDRHHPQTEQIYSKLK 664

Query: 587 EMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNL 646
           E+    K +       +  LC  D  E++ +L +HSERLAIA+GLI   + +PI + KN 
Sbjct: 665 ELNFSFKKSKERLLNEENALC--DFTERKEQLLDHSERLAIAYGLICTAADTPIMVFKNT 722

Query: 647 RVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           R C DCH   K +S +  RE++VRD +RFHH  +G CSC+D+W
Sbjct: 723 RSCKDCHDFAKRVSIVTGRELVVRDGNRFHHINSGECSCRDYW 765



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/382 (24%), Positives = 173/382 (45%), Gaps = 15/382 (3%)

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD 187
           + K    LGA+ +GK  H  + ++    +KF+ + ++ MY          R FD + D+D
Sbjct: 98  LFKMCGTLGALSDGKLFHNRLQRMA-NSNKFIDNCILKMYCDCKSFTSAERFFDKIVDQD 156

Query: 188 LVSWNCLIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKCGKVEIAREI 241
           L SW+ +I  Y ++G ++ A++LF  M      P+  +FS   L+  F+    +++ ++I
Sbjct: 157 LSSWSTIISAYTEEGRIDEAVRLFLRMLDLGITPNSSIFS--TLIMSFTDPSMLDLGKQI 214

Query: 242 ---FYRMPNRNLVSWNAMI-NGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRF 297
                R+     +S   +I N Y+K G +D A    + M  ++ +    ++ GY    R 
Sbjct: 215 HSQLIRIGFAANISIETLISNMYVKCGWLDGAEVATNKMTRKNAVACTGLMVGYTKAARN 274

Query: 298 MEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLL 357
            +AL L   M+   V  +       L A A L  L  G+ +HSY +K G   +  +GT L
Sbjct: 275 RDALLLFGKMISEGVELDGFVFSIILKACAALGDLYTGKQIHSYCIKLGLESEVSVGTPL 334

Query: 358 IQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA 417
           +  Y KC   E+A   F +I +     W+A+I G    G   +AL++F  +   G+   +
Sbjct: 335 VDFYVKCARFEAARQAFESIHEPNDFSWSALIAGYCQSGQFDRALEVFKAIRSKGVLLNS 394

Query: 418 ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIE 477
             +  +  ACS    +  G +     I   G+   +     ++ +  + G ++ A     
Sbjct: 395 FIYTNIFQACSAVSDLICGAQIHADAIKK-GLVAYLSGESAMISMYSKCGQVDYAHQAFL 453

Query: 478 SMPMRPNFVIWMSLLSGARNHG 499
           ++  +P+ V W +++     HG
Sbjct: 454 TID-KPDTVAWTAIICAHAYHG 474



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 121/259 (46%), Gaps = 2/259 (0%)

Query: 244 RMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALEL 303
           RM N N    N ++  Y       SA   FD +  +DL +W+++I+ Y   GR  EA+ L
Sbjct: 120 RMANSNKFIDNCILKMYCDCKSFTSAERFFDKIVDQDLSSWSTIISAYTEEGRIDEAVRL 179

Query: 304 LETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSK 363
              ML   + PN +   + + +    ++L+ G+ +HS +++ GF  +  + TL+  MY K
Sbjct: 180 FLRMLDLGITPNSSIFSTLIMSFTDPSMLDLGKQIHSQLIRIGFAANISIETLISNMYVK 239

Query: 364 CGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGV 423
           CG ++ A      +++K     T ++VG         AL LF KM   G++     F  +
Sbjct: 240 CGWLDGAEVATNKMTRKNAVACTGLMVGYTKAARNRDALLLFGKMISEGVELDGFVFSII 299

Query: 424 LNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRP 483
           L AC+  G +  G++  +  I   G+E  +     LVD   +    E A+   ES+   P
Sbjct: 300 LKACAALGDLYTGKQIHSYCIK-LGLESEVSVGTPLVDFYVKCARFEAARQAFESIH-EP 357

Query: 484 NFVIWMSLLSGARNHGNKD 502
           N   W +L++G    G  D
Sbjct: 358 NDFSWSALIAGYCQSGQFD 376



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 107/247 (43%), Gaps = 37/247 (14%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYV 98
           Q+HA ++K  L+ +    S ++S+Y       + YA   F  I   P  V +  +I  + 
Sbjct: 415 QIHADAIKKGLVAYLSGESAMISMY--SKCGQVDYAHQAFLTI-DKPDTVAWTAIICAHA 471

Query: 99  FNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKF 158
           ++ ++ EAL LF ++    + P+  T   ++   +  G +KEGK+I              
Sbjct: 472 YHGKAFEALRLFKEMQGSGVRPNAVTFIGLLNACSHSGLVKEGKKI-------------- 517

Query: 159 VLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP-DR 217
            L S+   Y     ID                +NC+ID Y + G ++ A+++   +P + 
Sbjct: 518 -LDSMSDEYGVNPTID---------------HYNCMIDVYSRAGLLQEALEVIRSLPFEP 561

Query: 218 DLFSWTCLVDGFSKCGKVE---IAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFD 274
           D+ SW  L+ G      +E   IA +  +R+   +  ++  M N Y  AG  D A +   
Sbjct: 562 DVMSWKSLLGGCWSHRNLEIGMIAADNIFRLDPLDSATYVIMFNLYALAGKWDEAAQFRK 621

Query: 275 DMEIRDL 281
            M  R+L
Sbjct: 622 MMAERNL 628


>gi|345505228|gb|AEN99838.1| chlororespiratory reduction 4, partial [Matthiola incana]
          Length = 584

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 226/572 (39%), Positives = 320/572 (55%), Gaps = 45/572 (7%)

Query: 42  ALSVKTNLIYHSGISSRL-LSLYVDPHINNLHYARSIFDR-------ILQHPSLVLYNLL 93
           A  + T  I +  +++R+ LS           +AR IF         + + P   L+N +
Sbjct: 7   ARXITTGFIKNPNLTTRIVLSFSASRRSYLAEFARCIFHEYHVSSYSVEEDP--FLWNAV 64

Query: 94  IKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGF 153
           IK +        AL LFC +++  +  D F++  V+K  +RLG +  G Q+HG + K G 
Sbjct: 65  IKSFSHGVDPRNALLLFCLMIENSVSVDKFSISLVLKACSRLGFVDFGMQVHGFLRKTGI 124

Query: 154 GFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVE-------- 205
             D F+ + L+ +Y K G +   R+VFD M  +D VS+N +IDGYVK G +E        
Sbjct: 125 YSDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLIESARELFDL 184

Query: 206 --------------------------VAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAR 239
                                     VA KLFDEMP++DL SW  L+DG+ K  ++E A+
Sbjct: 185 MPREKKNLISWNCMISGYTQSEDGVNVASKLFDEMPEKDLISWNSLIDGYVKHRRIEDAK 244

Query: 240 EIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFME 299
            +F  MP +++V+W  MI+GY K G V  A +LFD+M  RD++ +NSM+AGY  N    E
Sbjct: 245 SLFDLMPRKDVVTWATMIDGYAKLGFVHQAKKLFDEMPQRDVVAYNSMMAGYVQNKYHAE 304

Query: 300 ALELLETMLIGDVL-PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLI 358
           A+ +   M     L P++ TLV  LSA+A L  L+K   +H YI+ N F + G LG  LI
Sbjct: 305 AIGIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLYIMDNKFRLGGKLGVALI 364

Query: 359 QMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI 418
             YSKCGSI+ ++ VF  I  K + HW AMI GL +HG+   A D+  ++ +  +KP  I
Sbjct: 365 DTYSKCGSIQKSMRVFEEIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIEKRSIKPDDI 424

Query: 419 TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIES 478
           TFIGVLNACSH+GLV +G   F +M   + IEP ++HYGC+VDIL R+G +E AK+ IE 
Sbjct: 425 TFIGVLNACSHSGLVKEGLLCFELMRRKHKIEPKLQHYGCMVDILSRSGSIELAKNLIEE 484

Query: 479 MPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKV 538
           MP+ PN VIW + L+   NH   + GE  A +L          +V+LSN+YA+ G W +V
Sbjct: 485 MPIEPNDVIWRTFLTACSNHKEFETGELVAKHLFLQGGYNPSSFVLLSNMYASFGMWKEV 544

Query: 539 SEVREMMKKRGFRKDPGSSSIEHRGVLHEFVV 570
             VR  MK+R  RK PG S IE  G +HEF V
Sbjct: 545 RRVRTTMKERKLRKIPGCSWIELDGNVHEFFV 576


>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 224/559 (40%), Positives = 325/559 (58%), Gaps = 15/559 (2%)

Query: 144 IHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGE 203
           IH  + + G   D F++  L+   +K   ID   R+F    + ++  +  LIDG+V  G 
Sbjct: 58  IHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGN 117

Query: 204 VEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIA----REIFYR-----MPNRNLVSWN 254
              A++L+  M    +     L+    K    ++A    RE+  R       +  LV   
Sbjct: 118 YLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALKLGFSSNRLVRLR 177

Query: 255 AMINGYMKAGDVDSACELFDDME----IRDLITWNSMIAGYELNGRFMEALELLETMLIG 310
            M   Y K G++  A  +F++M      +D + W +MI G+  N     ALE    M   
Sbjct: 178 IM-ELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEETNRALEAFRGMQGE 236

Query: 311 DVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESA 370
           +V PN+ T+V  LSA + L  L  GRW+HSY+ K    ++  +G  LI MYS+CGSI+ A
Sbjct: 237 NVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEA 296

Query: 371 LTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHA 430
            TVF  +  + V  +  MI GL M+G + QA++LF  M    ++PT +TF+GVLNACSH 
Sbjct: 297 QTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHG 356

Query: 431 GLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMS 490
           GLV+ G   F+ M  DY +EP IEHYGC+VD+L R G LEEA   I +M M P+ ++  +
Sbjct: 357 GLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGT 416

Query: 491 LLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGF 550
           LLS  + H N ++GE  A  L        G YV+LS++YA++G+W + ++VR  MK+ G 
Sbjct: 417 LLSACKMHKNLELGEQVAKELEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGM 476

Query: 551 RKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIED 610
           +K+PG SSIE    +HEF++GD  HPQ + I+ KL E+   L+  G+ P+   VL  IED
Sbjct: 477 QKEPGCSSIEVNNEIHEFLLGDLRHPQKERIYEKLEELNRLLRLEGYHPEKEVVLQDIED 536

Query: 611 QKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVR 670
             EKE  L  HSERLAI +GLI+ +  + IR++KNLRVC DCHS  KL++ I  R+I+VR
Sbjct: 537 -GEKEWALAMHSERLAICYGLISTEPCTMIRVMKNLRVCYDCHSAIKLIAKITRRKIVVR 595

Query: 671 DNSRFHHFKNGSCSCKDFW 689
           D +RFH+F+NG+CSC D+W
Sbjct: 596 DRNRFHYFENGACSCGDYW 614



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 110/369 (29%), Positives = 181/369 (49%), Gaps = 46/369 (12%)

Query: 71  LHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIK 130
           + YA  IF +   +P++ LY  LI  +V +    EA+ L+  +L   +LPDN+ +  ++K
Sbjct: 87  IDYASRIF-QYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILK 145

Query: 131 GAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD----K 186
                 A++EG+++H    KLGF  ++ V   ++ +Y K GE+   RRVF+ M +    K
Sbjct: 146 ACGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAK 205

Query: 187 DLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIF 242
           D V W  +IDG+V+  E   A++ F  M   ++    F+  C++   S+ G +EI R + 
Sbjct: 206 DTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVH 265

Query: 243 YRMP----NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFM 298
             M       NL   NA+IN Y + G +D A  +FD+M+ RD+IT+N+MI+G  +NG+  
Sbjct: 266 SYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSR 325

Query: 299 EALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLI 358
           +A+EL   M+   + P + T V  L+A +           H  +V  GF +         
Sbjct: 326 QAIELFRVMVGRRLRPTNVTFVGVLNACS-----------HGGLVDFGFEI--------- 365

Query: 359 QMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI 418
                     S    +R   + ++ H+  M+  LG  G   +A DL      M M P  I
Sbjct: 366 --------FHSMARDYRV--EPQIEHYGCMVDLLGRVGRLEEAYDLIRT---MKMTPDHI 412

Query: 419 TFIGVLNAC 427
               +L+AC
Sbjct: 413 MLGTLLSAC 421



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 164/352 (46%), Gaps = 37/352 (10%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQH---PSLVLYN 91
           +E +++H+ ++K     +  +  R++ LY       L  AR +F+ + +       V + 
Sbjct: 154 REGREVHSRALKLGFSSNRLVRLRIMELY--GKCGELGDARRVFEEMPEDVVAKDTVCWT 211

Query: 92  LLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKL 151
            +I  +V N+ ++ AL  F  +    + P+ FT+ CV+   ++LGA++ G+ +H  + K 
Sbjct: 212 AMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKF 271

Query: 152 GFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLF 211
               + FV ++L++MY++ G ID  + VFD M D+D++++N +I G    G+   A++LF
Sbjct: 272 EIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELF 331

Query: 212 DEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS-----WNAMINGYMK 262
             M  R L     ++  +++  S  G V+   EIF+ M     V      +  M++   +
Sbjct: 332 RVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGR 391

Query: 263 AGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSA 322
            G ++ A          DLI    M   + + G  + A ++ + + +G+ +  +  L   
Sbjct: 392 VGRLEEA---------YDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKE--LEDR 440

Query: 323 LSAVAGLAVL------NKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIE 368
             A +G  VL      + G+W  +  V+      G      +Q    C SIE
Sbjct: 441 GQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAG------MQKEPGCSSIE 486


>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
 gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
          Length = 933

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 211/585 (36%), Positives = 341/585 (58%), Gaps = 40/585 (6%)

Query: 40  LHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVF 99
           ++A+ VKTN      + ++ +S       N + YA   + + ++ P++ +YN +IK +V 
Sbjct: 1   MYAVMVKTNTNQDCYLMNQFISALST--FNRMDYAVLAYTQ-MEIPNVFVYNAMIKGFVQ 57

Query: 100 NQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFV 159
           + +  +AL L+  +L   + P ++T P +IK    +  ++  + +HG V++ GF    FV
Sbjct: 58  SYQPVQALELYVQMLRANVSPTSYTFPSLIKACGLVSQLRFAEAVHGHVWRNGFDSHVFV 117

Query: 160 LSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL 219
            +SLV                               D Y   G +E ++++FDEMP+RD+
Sbjct: 118 QTSLV-------------------------------DFYSSMGRIEESVRVFDEMPERDV 146

Query: 220 FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIR 279
           F+WT +V G  + G +  A  +F  MP+RNL +WN +I+GY +  +VD A  LF+ M  R
Sbjct: 147 FAWTTMVSGLVRVGDMSSAGRLFDMMPDRNLATWNTLIDGYARLREVDVAELLFNQMPAR 206

Query: 280 DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMH 339
           D+I+W +MI  Y  N RF EAL +   M    + P++ T+ + +SA A L  L+ G+ +H
Sbjct: 207 DIISWTTMINCYSQNKRFREALGVFNEMAKHGISPDEVTMATVISACAHLGALDLGKEIH 266

Query: 340 SYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMAT 399
            YI+++GF +D  +G+ LI MY+KCGS++ +L +F  + +K +  W ++I GL +HG A 
Sbjct: 267 YYIMQHGFNLDVYIGSALIDMYAKCGSLDRSLLMFFKLREKNLFCWNSVIEGLAVHGYAE 326

Query: 400 QALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCL 459
           +AL +F+KM R  +KP  +TF+ VL+AC+HAGL+ +GR+ F  M  D+ I P +EHYGC+
Sbjct: 327 EALAMFDKMEREKIKPNGVTFVSVLSACNHAGLIEEGRKRFASMTRDHSIPPGVEHYGCM 386

Query: 460 VDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTI 519
           VD+L + G LEEA   I +M + PN VIW +LLSG + H N +I + AAN L+ + P   
Sbjct: 387 VDLLSKAGLLEEALQLIRTMKLEPNAVIWGALLSGCKLHRNLEIAQVAANKLMVLEPGNS 446

Query: 520 GCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKD-PGSSSIEHRGVLHEFVVGDKSHPQT 578
           G Y +L N+ A   +W + +++R  MK++G  K  PGSS IE    +H+F   DKSH  +
Sbjct: 447 GYYTLLVNMNAEVNRWGEAAKIRLTMKEQGVEKRCPGSSWIEMESQVHQFAASDKSHAAS 506

Query: 579 DEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSE 623
           DEI+S L+E+  ++K AG+VP+     LC  +  E+     +H +
Sbjct: 507 DEIYSLLAELDGQMKLAGYVPE-----LCEAETVEQRRSSISHEK 546


>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 630

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 230/621 (37%), Positives = 334/621 (53%), Gaps = 43/621 (6%)

Query: 107 LTLFCDL--LDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLV 164
           +TL C     D+ LL   FT  C  +   R     +  Q HGL +     + + +   + 
Sbjct: 15  VTLRCSYSSTDQTLLLSEFTRLCYQRDLPRAMKAMDSLQSHGL-WADSATYSELIKCCIS 73

Query: 165 SMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTC 224
           +     G + + R ++       +   N LI+ YVK   +  A +LFD+MP R++ SWT 
Sbjct: 74  NRAVHEGNL-ICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTT 132

Query: 225 LVDGFSKCGKVEIAREIFYRM------PN------------------------------R 248
           ++  +SKC   + A E+   M      PN                               
Sbjct: 133 MISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVRMLHCGIIKEGLES 192

Query: 249 NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETML 308
           ++   +A+I+ + K G+ + A  +FD+M   D I WNS+I G+  N R   ALEL + M 
Sbjct: 193 DVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMK 252

Query: 309 IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIE 368
               +   ATL S L A  GLA+L  G   H +IVK  +  D +L   L+ MY KCGS+E
Sbjct: 253 RAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLE 310

Query: 369 SALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACS 428
            AL VF  + ++ V  W+ MI GL  +G + +AL LF +M   G KP  IT +GVL ACS
Sbjct: 311 DALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACS 370

Query: 429 HAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIW 488
           HAGL+ DG  YF  M   YGI+P  EHYGC++D+L + G L++A   +  M   P+ V W
Sbjct: 371 HAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTW 430

Query: 489 MSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548
            +LL   R   N  + EYAA  +I + P+  G Y +LSNIYA + +WD V E+R  M+ R
Sbjct: 431 RTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDR 490

Query: 549 GFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCI 608
           G +K+PG S IE    +H F++GD SHPQ  E+  KL+++ ++L   G+VP+T  VL  +
Sbjct: 491 GIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDL 550

Query: 609 EDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREII 668
           E + + E  L +HSE+LA+AFGL+ +     IRI KNLR+C DCH   KL S +  R I+
Sbjct: 551 EGE-QMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIV 609

Query: 669 VRDNSRFHHFKNGSCSCKDFW 689
           +R   R+HHF++G CSC D+W
Sbjct: 610 IRGPIRYHHFQDGKCSCGDYW 630


>gi|358347043|ref|XP_003637572.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503507|gb|AES84710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 833

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 230/676 (34%), Positives = 368/676 (54%), Gaps = 80/676 (11%)

Query: 73  YARSIFDRILQHP--SLVLYNLLIKCYVFNQRSHEALTLFCDLLDRF-LLPDNFTLPCVI 129
           +AR +FD +        V +N ++  Y      + A++LF ++   + +LPD   +  ++
Sbjct: 179 HARKVFDELCYRGICDSVTWNSIVSVYSHCFVPNVAVSLFREMTVGYGILPDTVGVVNIL 238

Query: 130 KGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLV 189
                LG    G+Q+HG   + G   D FV ++LV MYAK G+++   +VF+ M  KD+V
Sbjct: 239 PVCGYLGLGLCGRQVHGFCVRSGLVEDVFVGNALVDMYAKCGKMEDANKVFERMRFKDVV 298

Query: 190 SWNCLIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREIFYRM 245
           +WN ++ GY + G  E A+ LF +M +     D+ +W+ ++ G+++ G    A ++F +M
Sbjct: 299 TWNAMVTGYSQNGRFEDALSLFGKMREEKIESDVVTWSSVISGYAQRGFGCEAMDVFRQM 358

Query: 246 ------PN----------------------------------------RNLVSWNAMING 259
                 PN                                         +L   NA+I+ 
Sbjct: 359 CGCRCRPNVVTLMSLLSACASVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINALIDM 418

Query: 260 YMKAGDVDSACELFDDM--EIRDLITWNSMIAGYELNGRFMEALELLETMLIGD--VLPN 315
           Y K   ++ A  +FD++  + RD++TW  MI GY  +G    AL+L   M   D  ++PN
Sbjct: 419 YAKCKSLEVARAMFDEICPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPN 478

Query: 316 DATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVL--GTLLIQMYSKCGSIESALTV 373
           D T+   L A A LA L  G+ +H+Y+++   +   VL     LI MYSK G +++A  V
Sbjct: 479 DFTISCVLMACARLAALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVV 538

Query: 374 FRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLV 433
           F ++SK+    WT+++ G GMHG +  A  +F++M +  +    ITF+ VL ACSH+G+ 
Sbjct: 539 FDSMSKRNAVSWTSLLTGYGMHGRSEDAFRVFDEMRKEALVLDGITFLVVLYACSHSGM- 597

Query: 434 NDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLS 493
                       D+G++P +EHY C+VD+L R G L EA   I  MP+ P  V+W++LLS
Sbjct: 598 ------------DFGVDPGVEHYACMVDLLGRAGRLGEAMRLINDMPIEPTPVVWIALLS 645

Query: 494 GARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKD 553
             R H N+++ E+AA  L+++  D  G Y +LSNIYA A +W  V+ +  +MK+ G +K 
Sbjct: 646 ACRIHSNEELAEFAAKKLLELKADNDGTYTLLSNIYANARRWKDVARIGYLMKRTGIKKI 705

Query: 554 PGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKE 613
           PG S ++ R  +  F VGD++H Q+ +I+  L+++  ++KA   + D         D +E
Sbjct: 706 PGWSWVKGRKGMETFYVGDRTHLQSQKIYETLADLIKRIKANFSLHDV--------DDEE 757

Query: 614 KEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNS 673
           K  +L  HSE+LA+A+ ++ +   +PIRI KNLR+C D HS    +S I   EII+RD+S
Sbjct: 758 KGDQLSEHSEKLALAYAILTLPPGAPIRITKNLRICGDFHSAITYISMIVEHEIILRDSS 817

Query: 674 RFHHFKNGSCSCKDFW 689
           RFH FKNGSCSCK +W
Sbjct: 818 RFHQFKNGSCSCKGYW 833



 Score =  214 bits (546), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 169/550 (30%), Positives = 256/550 (46%), Gaps = 78/550 (14%)

Query: 26  NILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHY----ARSIFDRI 81
           N+L + S+    QQ   L+    L     I+  LL+ Y +  + NL Y    + SI + I
Sbjct: 20  NLLLYHSSTISKQQCKTLTQAKLLHQQYIINGHLLNSYTN--VTNLIYTYISSNSITNAI 77

Query: 82  L--------QHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           L         H S+  +N LI+  +     + AL LF  +      PD++T P V K   
Sbjct: 78  LLLEKNVTPSHSSVYWWNQLIRHALHFNSPNTALRLFRRMKTLHWTPDHYTFPFVFKACG 137

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK---DLVS 190
            +   + G  IHG V +LGF  + FV ++++SMY K   +   R+VFD +  +   D V+
Sbjct: 138 EISNFELGASIHGCVIRLGFESNVFVCNAVISMYGKCKAVVHARKVFDELCYRGICDSVT 197

Query: 191 WNCLIDGYVKKGEVEVAMKLFDEM-------PD--------------------------- 216
           WN ++  Y       VA+ LF EM       PD                           
Sbjct: 198 WNSIVSVYSHCFVPNVAVSLFREMTVGYGILPDTVGVVNILPVCGYLGLGLCGRQVHGFC 257

Query: 217 ------RDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSAC 270
                  D+F    LVD ++KCGK+E A ++F RM  +++V+WNAM+ GY + G  + A 
Sbjct: 258 VRSGLVEDVFVGNALVDMYAKCGKMEDANKVFERMRFKDVVTWNAMVTGYSQNGRFEDAL 317

Query: 271 ELFDDMEIR----DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326
            LF  M       D++TW+S+I+GY   G   EA+++   M      PN  TL+S LSA 
Sbjct: 318 SLFGKMREEKIESDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVVTLMSLLSAC 377

Query: 327 AGLAVLNKGRWMHSYIVKNGFVVDG---------VLGTLLIQMYSKCGSIESALTVFRAI 377
           A +  L  G+  H Y VK  F++ G          +   LI MY+KC S+E A  +F  I
Sbjct: 378 ASVGALLHGKETHCYSVK--FILKGEHNDDTDDLAVINALIDMYAKCKSLEVARAMFDEI 435

Query: 378 SKK--KVGHWTAMIVGLGMHGMATQALDLFNKMCRMG--MKPTAITFIGVLNACSHAGLV 433
             K   V  WT MI G   HG A  AL LF++M ++   + P   T   VL AC+    +
Sbjct: 436 CPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMACARLAAL 495

Query: 434 NDGRRYFNMMINDYGIEPTIEHYG-CLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLL 492
             G++    ++    I+  +     CL+D+  ++G ++ A+   +SM  R N V W SLL
Sbjct: 496 KFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMSKR-NAVSWTSLL 554

Query: 493 SGARNHGNKD 502
           +G   HG  +
Sbjct: 555 TGYGMHGRSE 564


>gi|296085287|emb|CBI29019.3| unnamed protein product [Vitis vinifera]
          Length = 408

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 204/446 (45%), Positives = 283/446 (63%), Gaps = 39/446 (8%)

Query: 245 MPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELL 304
           MP RNLVSWN+M++G++K G+V+ A  LF +M  RD+++WNSM+A Y   G+  EAL L 
Sbjct: 1   MPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALF 60

Query: 305 ETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKC 364
           + M                 AV                      V+ ++GT L+ MY+KC
Sbjct: 61  DQM----------------QAVG---------------------VNSIVGTALVDMYAKC 83

Query: 365 GSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVL 424
           G I  A  VF A+  K V  W  +I G+ + G   +A  LF +M   G++P  ITF+ +L
Sbjct: 84  GKISLATQVFNAMESKDVLAWNTIIAGMAILGHVKEAQQLFKEMKEAGVEPNDITFVAML 143

Query: 425 NACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPN 484
           +ACSHAG+V++G++  + M + YGIEP +EHYGC++D+L R G LEEA   I +MPM PN
Sbjct: 144 SACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTMPMEPN 203

Query: 485 FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREM 544
                +LL G R HGN ++GE     LI + P   G Y++LSNIYAAA +WD   +VR +
Sbjct: 204 PCALGALLEGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNL 263

Query: 545 MKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAA-GHVPDTTQ 603
           MK  G  K PG S IE +G++H FV GD SHP++++I+ KL+E+  +LK+A G+  DT  
Sbjct: 264 MKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGYSADTGN 323

Query: 604 VLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIY 663
            LL +E++ +KE  L  HSE+LAIA+GL+++ S+  IRIVKNLRVC DCH VTKL+S +Y
Sbjct: 324 GLLDMEEE-DKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVTKLISKVY 382

Query: 664 NREIIVRDNSRFHHFKNGSCSCKDFW 689
             EIIVRD +RFHHF++G CSC DFW
Sbjct: 383 GGEIIVRDRNRFHHFEDGECSCLDFW 408



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/265 (30%), Positives = 128/265 (48%), Gaps = 35/265 (13%)

Query: 183 MDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIF 242
           M +++LVSWN ++ G+VK G VE A  LF EMP RD+ SW  ++  +++CGK   A  +F
Sbjct: 1   MPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALF 60

Query: 243 YRMP--NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEA 300
            +M     N +   A+++ Y K G +  A ++F+ ME +D++ WN++IAG  + G   EA
Sbjct: 61  DQMQAVGVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAILGHVKEA 120

Query: 301 LELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQM 360
            +L + M    V PND T V+ LSA +   ++++G+                   LL  M
Sbjct: 121 QQLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQ------------------KLLDCM 162

Query: 361 YSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITF 420
            S  G IE            KV H+  +I  L   G+  +A++L      M M+P     
Sbjct: 163 SSSYG-IEP-----------KVEHYGCVIDLLARAGLLEEAMELIGT---MPMEPNPCAL 207

Query: 421 IGVLNACSHAGLVNDGRRYFNMMIN 445
             +L  C   G    G      +IN
Sbjct: 208 GALLEGCRIHGNFELGEMVGKRLIN 232



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 131/277 (47%), Gaps = 22/277 (7%)

Query: 86  SLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIH 145
           +LV +N ++  +V      EA  LF ++  R ++  N  L C  +      A+    Q+ 
Sbjct: 5   NLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMQ 64

Query: 146 GLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVE 205
            +      G +  V ++LV MYAK G+I L  +VF+AM+ KD+++WN +I G    G V+
Sbjct: 65  AV------GVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAILGHVK 118

Query: 206 VAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNR-----NLVSWNAM 256
            A +LF EM +  +     ++  ++   S  G V+  +++   M +       +  +  +
Sbjct: 119 EAQQLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCV 178

Query: 257 INGYMKAGDVDSACELFDDMEIR-DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPN 315
           I+   +AG ++ A EL   M +  +     +++ G  ++G F E  E++   LI ++ P 
Sbjct: 179 IDLLARAGLLEEAMELIGTMPMEPNPCALGALLEGCRIHGNF-ELGEMVGKRLI-NLQPC 236

Query: 316 DATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV 352
            +     LS +   A     +W  +  V+N   V+G+
Sbjct: 237 HSGRYILLSNIYAAA----KKWDDARKVRNLMKVNGI 269


>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Vitis vinifera]
          Length = 694

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 212/552 (38%), Positives = 320/552 (57%), Gaps = 41/552 (7%)

Query: 178 RVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEI 237
           RV  +++  D    + L+  Y K G  E A +LFDEMP++DL SW  L+ G S  G +  
Sbjct: 144 RVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGA 203

Query: 238 AREIFYRM-------PNR----NLVSW-----------------------------NAMI 257
               F RM       PN     ++VS                              N++I
Sbjct: 204 CLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLI 263

Query: 258 NGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDA 317
           N Y K G +D+A +LF++M +R L++WNSM+  +  NG   + ++L   M    + P+ A
Sbjct: 264 NMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQA 323

Query: 318 TLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAI 377
           T+V+ L A     +  +   +H+YI + GF  D ++ T L+ +Y+K G + ++  +F  I
Sbjct: 324 TMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEI 383

Query: 378 SKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGR 437
             +    WTAM+ G  +H    +A+ LF+ M + G++   +TF  +L+ACSH+GLV +G+
Sbjct: 384 KDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGK 443

Query: 438 RYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARN 497
           +YF +M   Y +EP ++HY C+VD+L R+G LE+A   I+SMPM P+  +W +LL   R 
Sbjct: 444 KYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRV 503

Query: 498 HGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSS 557
           +GN ++G+  A  L+ + P     Y++LSNIY+AAG W   S+VR +MK+R   ++PG S
Sbjct: 504 YGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRLTRNPGCS 563

Query: 558 SIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAE 617
            IEH   +H FVVGD+ HP++DEIH+KL E+  K++ AG  P T  VL  I D++ K   
Sbjct: 564 FIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIREAGCAPKTEFVLHDI-DEEVKVDM 622

Query: 618 LENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHH 677
           +  HSE+LAIAFGL+   S  P+ I KNLR+C DCHS  K  S +  R II+RD+ RFHH
Sbjct: 623 INKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHSTAKFASLLEKRTIIIRDSKRFHH 682

Query: 678 FKNGSCSCKDFW 689
           F +G CSC+D+W
Sbjct: 683 FADGLCSCRDYW 694



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 113/424 (26%), Positives = 191/424 (45%), Gaps = 63/424 (14%)

Query: 40  LHALSVKTNLIYHSG-ISSRLLSLYVDPHINNLHY---ARSIFDRILQHPSLVLYNLLIK 95
           +HA  +K+ L Y  G I  RL+S+Y       L Y   A+ +FD  + +  LV +N L+ 
Sbjct: 141 IHARVIKS-LNYSDGFIGDRLVSMYF-----KLGYDEDAQRLFDE-MPNKDLVSWNSLMS 193

Query: 96  CYVFNQRSHEALTLFCDL-LDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
                      L  FC +  +    P+  TL  V+   A +GA+ EGK +HG+V KLG  
Sbjct: 194 GLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMS 253

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
               V++SL++MY K G +D   ++F+ M  + LVSWN ++  +   G  E  M LF+ M
Sbjct: 254 GKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLM 313

Query: 215 P----DRDLFSWTCLVDGFSKCGKVEIAREIFYRMP----NRNLVSWNAMINGYMKAGDV 266
                + D  +   L+   +  G    A  I   +     N +++   A++N Y K G +
Sbjct: 314 KRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRL 373

Query: 267 DSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326
           +++ ++F++++ RD I W +M+AGY ++    EA++L + M                   
Sbjct: 374 NASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLM------------------- 414

Query: 327 AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS-----KKK 381
                           VK G  VD V  T L+   S  G +E     F  +S     + +
Sbjct: 415 ----------------VKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPR 458

Query: 382 VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFN 441
           + H++ M+  LG  G    A +L      M M+P++  +  +L AC   G V  G+    
Sbjct: 459 LDHYSCMVDLLGRSGRLEDAYELIKS---MPMEPSSGVWGALLGACRVYGNVELGKEVAE 515

Query: 442 MMIN 445
            +++
Sbjct: 516 QLLS 519


>gi|357132372|ref|XP_003567804.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Brachypodium distachyon]
          Length = 851

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 218/614 (35%), Positives = 340/614 (55%), Gaps = 41/614 (6%)

Query: 85  PSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQI 144
           P+L  +N ++     + R  EAL +   +L++ L PD  T+  ++K  A  G ++ G ++
Sbjct: 270 PTLATWNAVLSGCARHGRDREALAVLRRMLEQGLWPDATTVSSLLKSVANAGMVRHGMEV 329

Query: 145 HGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEV 204
           H    + G   D +  ++LV MYA                               K G +
Sbjct: 330 HCFFLRHGLVPDAYTGTALVDMYA-------------------------------KCGRL 358

Query: 205 EVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMP-NR---NLVSWNAMINGY 260
           + A ++FD +  R+L +W  LV G +  G+ E A E+  RM  NR   N+ +WN +I GY
Sbjct: 359 DCARRVFDTLEHRNLATWNSLVAGHAYAGQFEAALELVERMKRNRLDPNVTTWNGLITGY 418

Query: 261 MKAGDVDSACELFDDMEIRDL----ITWNSMIAGYELNGRFMEALELLETMLIGDVLPND 316
              G    A  L   ++   L    ++W S+I+G   NG + ++    + M    V P+ 
Sbjct: 419 SLNGLSSQAMLLLRQIKAAGLTPNVVSWTSLISGSCHNGEYEDSFNFFKEMQKDGVQPSL 478

Query: 317 ATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRA 376
            T++  L A AGLA+L KG+ +H + ++  +  D V+GT LI MYSK GS+ SA  +F  
Sbjct: 479 VTMLVLLRACAGLALLKKGKELHCFALRRAYDCDMVVGTALIDMYSKAGSLTSAKRIFGR 538

Query: 377 ISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDG 436
           I  K +    AM+ GL +HG + +A+ LF+ + R G+KP +ITF  +L AC   GL+ +G
Sbjct: 539 IQNKNLVCCNAMLTGLAVHGQSHEAITLFHDLWRSGLKPDSITFTALLTACRSMGLITEG 598

Query: 437 RRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGAR 496
             YF+ M   YG+ PT E+Y C+VD+L R+GYL+EA + IE  P+ P   +W +LL+G  
Sbjct: 599 WEYFDNMETKYGVVPTAENYACMVDLLARSGYLDEAMALIERSPVDPGASLWGALLTGCS 658

Query: 497 NHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGS 556
            HGN D+ E AA NL ++ P     Y+++ ++Y     +D+   ++  MK RG    PG 
Sbjct: 659 IHGNLDLAEVAARNLFRLEPYNSANYLMIMSLYEHEQMYDEADSLKYAMKARGVNTRPGW 718

Query: 557 SSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEA 616
           S I+    +H F V    HP+T EI  +L  +  ++K  G+VPDT+ V+  + ++ EKE 
Sbjct: 719 SWIQIEQGIHVFEVDGSPHPETAEICEELMSLVRQIKMTGYVPDTSCVVYNVPEE-EKEK 777

Query: 617 ELENHSERLAIAFGLINV-KSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRF 675
            L  H+E+LAI +GLI+   SR P+R++KN R+C+DCH V K +S +  R+II+RD  RF
Sbjct: 778 LLLCHTEKLAITYGLIHSDASRMPVRVIKNTRMCSDCHEVAKHISALCGRQIILRDAVRF 837

Query: 676 HHFKNGSCSCKDFW 689
           HHF +G+CSC D+W
Sbjct: 838 HHFVDGNCSCNDYW 851



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 114/469 (24%), Positives = 183/469 (39%), Gaps = 100/469 (21%)

Query: 88  VLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGL 147
           VL+N  +          EA+  F ++  R +  D + L  V+    R  A +EGK +H  
Sbjct: 135 VLWNKQVAMLAEAGEWDEAIGAFREMQARGVAADGYALARVLHACGRAAARREGKAVHAH 194

Query: 148 VFKLGF-GFDKFVLSSLVSMYAKFGEIDLGRRV-FDAMDDKDLVSWNCLIDGYVKKGEVE 205
             K G       V   L  MYA+  ++     V   A      V+W+ ++   V+ G V+
Sbjct: 195 ALKAGLVDAHPLVPGFLAGMYAEGADVAAATAVLLRATPPPRSVAWDAVVACCVRLGLVD 254

Query: 206 VAMKLFDEM----PDRDLFSWTCLVDGFSKCGKVEIAREIFYRM------PNRNLVS--- 252
            AM+L   M    P+  L +W  ++ G ++ G+   A  +  RM      P+   VS   
Sbjct: 255 DAMELAGRMARDGPEPTLATWNAVLSGCARHGRDREALAVLRRMLEQGLWPDATTVSSLL 314

Query: 253 ------------------------------WNAMINGYMKAGDVDSACELFDDMEIRDLI 282
                                           A+++ Y K G +D A  +FD +E R+L 
Sbjct: 315 KSVANAGMVRHGMEVHCFFLRHGLVPDAYTGTALVDMYAKCGRLDCARRVFDTLEHRNLA 374

Query: 283 TWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYI 342
           TWNS++AG+   G+F  ALEL+E M    + PN  T                  W     
Sbjct: 375 TWNSLVAGHAYAGQFEAALELVERMKRNRLDPNVTT------------------W----- 411

Query: 343 VKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS----KKKVGHWTAMIVGLGMHGMA 398
             NG          LI  YS  G    A+ + R I        V  WT++I G   +G  
Sbjct: 412 --NG----------LITGYSLNGLSSQAMLLLRQIKAAGLTPNVVSWTSLISGSCHNGEY 459

Query: 399 TQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGC 458
             + + F +M + G++P+ +T + +L AC+   L+  G+      +           Y C
Sbjct: 460 EDSFNFFKEMQKDGVQPSLVTMLVLLRACAGLALLKKGKELHCFALR--------RAYDC 511

Query: 459 -------LVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGN 500
                  L+D+  + G L  AK     +  + N V   ++L+G   HG 
Sbjct: 512 DMVVGTALIDMYSKAGSLTSAKRIFGRIQNK-NLVCCNAMLTGLAVHGQ 559



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 55/253 (21%), Positives = 101/253 (39%), Gaps = 39/253 (15%)

Query: 279 RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWM 338
           +D + WN  +A     G + EA+     M    V  +   L   L A    A   +G+ +
Sbjct: 132 KDAVLWNKQVAMLAEAGEWDEAIGAFREMQARGVAADGYALARVLHACGRAAARREGKAV 191

Query: 339 HSYIVKNGFV-VDGVLGTLLIQMYSKCGSIESALTVF-------RAIS------------ 378
           H++ +K G V    ++   L  MY++   + +A  V        R+++            
Sbjct: 192 HAHALKAGLVDAHPLVPGFLAGMYAEGADVAAATAVLLRATPPPRSVAWDAVVACCVRLG 251

Query: 379 -----------------KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFI 421
                            +  +  W A++ G   HG   +AL +  +M   G+ P A T  
Sbjct: 252 LVDDAMELAGRMARDGPEPTLATWNAVLSGCARHGRDREALAVLRRMLEQGLWPDATTVS 311

Query: 422 GVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPM 481
            +L + ++AG+V  G       +  +G+ P       LVD+  + G L+ A+   +++  
Sbjct: 312 SLLKSVANAGMVRHGMEVHCFFLR-HGLVPDAYTGTALVDMYAKCGRLDCARRVFDTLEH 370

Query: 482 RPNFVIWMSLLSG 494
           R N   W SL++G
Sbjct: 371 R-NLATWNSLVAG 382


>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
          Length = 1151

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 218/618 (35%), Positives = 347/618 (56%), Gaps = 12/618 (1%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYV 98
           QLH+   K  +     +   LL LYV     ++  A  IF+      ++VL+NL++  + 
Sbjct: 265 QLHSYLFKAGISSDYIMEGSLLDLYVK--CGDVETALVIFNSS-DRTNVVLWNLMLVAFG 321

Query: 99  FNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKF 158
                 ++  LFC +    + P+ FT PC+++       I  G+QIH L  K GF  D +
Sbjct: 322 QINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMY 381

Query: 159 VLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRD 218
           V   L+ MY+K+G ++  RRV + + +KD+VSW  +I GYV+    + A+  F EM    
Sbjct: 382 VSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCG 441

Query: 219 LFSWTC-LVDGFSKCGKVEIARE-------IFYRMPNRNLVSWNAMINGYMKAGDVDSAC 270
           ++     L    S C  +   R+       I+    + ++  WNA++N Y + G +  A 
Sbjct: 442 IWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAF 501

Query: 271 ELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLA 330
             F++ME++D IT N +++G+  +G   EAL++   M    V  N  T VSALSA A LA
Sbjct: 502 SSFEEMELKDGITGNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLA 561

Query: 331 VLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIV 390
            + +G+ +H+ ++K G   +  +G  LI +Y KCGS E A   F  +S++    W  +I 
Sbjct: 562 EIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIIT 621

Query: 391 GLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIE 450
               HG   +ALDLF++M + G+KP  +TFIGVL ACSH GLV +G  YF  M ++YGI 
Sbjct: 622 SCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIR 681

Query: 451 PTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANN 510
           P  +HY C++DI  R G L+ AK  IE MP+  + ++W +LLS  + H N ++GE+AA +
Sbjct: 682 PRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKH 741

Query: 511 LIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVV 570
           L+++ P     YV+LSN YA   +W    +VR+MM+ RG RK+PG S IE + V+H F V
Sbjct: 742 LLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKNVVHAFFV 801

Query: 571 GDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFG 630
           GD+ HP  ++I++ L+ + +++   G+  +   +    E +     +L  HSE+LA+ FG
Sbjct: 802 GDRLHPLAEQIYNFLAVINDRVAKVGYKQEKYHLFHDKEQEGRDPTDL-VHSEKLAVTFG 860

Query: 631 LINVKSRSPIRIVKNLRV 648
           L+++    P+R++KNLRV
Sbjct: 861 LMSLPPCMPLRVIKNLRV 878



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 112/394 (28%), Positives = 191/394 (48%), Gaps = 12/394 (3%)

Query: 143 QIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKG 202
           +IH      G G  + V + L+ +Y+K G +   RRVF+ +  +D VSW  ++ GY + G
Sbjct: 63  EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNG 122

Query: 203 EVEVAMKLFDEMPDRDLFSWTCLVDG-FSKCGKVEI---AREIFYRMPNRNLVS----WN 254
             E A+ L+ +M    +     ++    S C K E+    R I  +       S     N
Sbjct: 123 LGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGN 182

Query: 255 AMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLP 314
           A+I  Y++ G    A  +F DM  RD +T+N++I+G+   G    ALE+ E M    + P
Sbjct: 183 AVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSP 242

Query: 315 NDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVF 374
           +  T+ S L+A A L  L KG  +HSY+ K G   D ++   L+ +Y KCG +E+AL +F
Sbjct: 243 DCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIF 302

Query: 375 RAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVN 434
            +  +  V  W  M+V  G      ++ +LF +M   G++P   T+  +L  C+    ++
Sbjct: 303 NSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREID 362

Query: 435 DGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG 494
            G +  ++ +   G E  +   G L+D+  + G+LE+A+  +E M    + V W S+++G
Sbjct: 363 LGEQIHSLSVKT-GFESDMYVSGVLIDMYSKYGWLEKARRVLE-MLKEKDVVSWTSMIAG 420

Query: 495 ARNHG--NKDIGEYAANNLIKVAPDTIGCYVVLS 526
              H      +  +       + PD IG    +S
Sbjct: 421 YVQHECCKDALAAFKEMQKCGIWPDNIGLASAIS 454



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 118/470 (25%), Positives = 223/470 (47%), Gaps = 15/470 (3%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYV 98
           ++HA +V   L  +  + + L+ LY    +  +  AR +F+ +    + V +  ++  Y 
Sbjct: 63  EIHAKAVTRGLGKYRIVGNLLIDLYSKNGL--VLPARRVFEELSARDN-VSWVAMLSGYA 119

Query: 99  FNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKF 158
            N    EAL L+  +    ++P  + L  V+    +     +G+ IH   +K GF  + F
Sbjct: 120 QNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIF 179

Query: 159 VLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP--- 215
           V ++++++Y + G   L  RVF  M  +D V++N LI G+ + G  E A+++F+EM    
Sbjct: 180 VGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSG 239

Query: 216 -DRDLFSWTCLVDGFSKCGKVEIARE----IFYRMPNRNLVSWNAMINGYMKAGDVDSAC 270
              D  + + L+   +  G ++   +    +F    + + +   ++++ Y+K GDV++A 
Sbjct: 240 LSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETAL 299

Query: 271 ELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLA 330
            +F+  +  +++ WN M+  +       ++ EL   M    + PN  T    L       
Sbjct: 300 VIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTR 359

Query: 331 VLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIV 390
            ++ G  +HS  VK GF  D  +  +LI MYSK G +E A  V   + +K V  WT+MI 
Sbjct: 360 EIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIA 419

Query: 391 GLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR-YFNMMINDYGI 449
           G   H     AL  F +M + G+ P  I     ++ C+    +  G + +  + ++ Y  
Sbjct: 420 GYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSG 479

Query: 450 EPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
           + +I  +  LV++  R G + EA S+ E M ++ + +    L+SG    G
Sbjct: 480 DVSI--WNALVNLYARCGRIREAFSSFEEMELK-DGITGNGLVSGFAQSG 526



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 158/306 (51%), Gaps = 11/306 (3%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCY 97
           +Q+H+LSVKT       +S  L+ +Y       L  AR + + +L+   +V +  +I  Y
Sbjct: 365 EQIHSLSVKTGFESDMYVSGVLIDMY--SKYGWLEKARRVLE-MLKEKDVVSWTSMIAGY 421

Query: 98  VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDK 157
           V ++   +AL  F ++    + PDN  L   I G A + A+++G QIH  ++  G+  D 
Sbjct: 422 VQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDV 481

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD- 216
            + ++LV++YA+ G I      F+ M+ KD ++ N L+ G+ + G  E A+K+F  M   
Sbjct: 482 SIWNALVNLYARCGRIREAFSSFEEMELKDGITGNGLVSGFAQSGLHEEALKVFMRMDQS 541

Query: 217 ---RDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR----NLVSWNAMINGYMKAGDVDSA 269
               ++F++   +   +   +++  ++I  R+            NA+I+ Y K G  + A
Sbjct: 542 GVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDA 601

Query: 270 CELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGL 329
              F +M  R+ ++WN++I     +GR +EAL+L + M    + PND T +  L+A + +
Sbjct: 602 KMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHV 661

Query: 330 AVLNKG 335
            ++ +G
Sbjct: 662 GLVEEG 667



 Score = 44.7 bits (104), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 42/201 (20%), Positives = 88/201 (43%), Gaps = 8/201 (3%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           K+ +Q+HA  +KT   + + + + L+SLY      +   A+  F  + +    V +N +I
Sbjct: 564 KQGKQIHARVIKTGHSFETEVGNALISLY--GKCGSFEDAKMEFSEMSERNE-VSWNTII 620

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEG-KQIHGLVFKLGF 153
                + R  EAL LF  +    + P++ T   V+   + +G ++EG      +  + G 
Sbjct: 621 TSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGI 680

Query: 154 GFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD-DKDLVSWNCLIDGYVKKGEVEV---AMK 209
                  + ++ ++ + G++D  ++  + M    D + W  L+        +EV   A K
Sbjct: 681 RPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAK 740

Query: 210 LFDEMPDRDLFSWTCLVDGFS 230
              E+   D  S+  L + ++
Sbjct: 741 HLLELEPHDSASYVLLSNAYA 761


>gi|356550971|ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 703

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 235/680 (34%), Positives = 385/680 (56%), Gaps = 20/680 (2%)

Query: 26  NILKFSSTHKET---QQLHA-LSVKTNLIYHSGIS--SRLLSLYVDPHINNLHYARSIFD 79
           N+LKFS+T K     + +HA L V+      S I+  + L++LY          AR +FD
Sbjct: 28  NLLKFSATAKSLRFGKTIHAQLVVRNQTSKDSDITQINSLINLY--SKCGQSKCARKLFD 85

Query: 80  RILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLD-RFLLPDNFTLPCVIKGAARLGAI 138
           R+LQ  ++V ++ L+  Y+      E L LF +L+      P+ +    V+   A  G +
Sbjct: 86  RMLQR-NVVSWSALMMGYLHKGEVLEVLGLFRNLVSLDSAYPNEYIFTIVLSCCADSGRV 144

Query: 139 KEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGY 198
           KEGKQ HG + K G    ++V ++L+ MY++   +D   ++ D +   D+ S+N ++   
Sbjct: 145 KEGKQCHGYLLKSGLLLHQYVKNALIHMYSRCFHVDSAMQILDTVPGDDVFSYNSILSAL 204

Query: 199 VKKG----EVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLV--- 251
           V+ G      +V  ++ DE    D  ++  ++   ++   +++  +I  ++    LV   
Sbjct: 205 VESGCRGEAAQVLKRMVDECVIWDSVTYVSVLGLCAQIRDLQLGLQIHAQLLKTGLVFDV 264

Query: 252 -SWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIG 310
              + +I+ Y K G+V +A + FD +  R+++ W +++  Y  NG F E L L   M + 
Sbjct: 265 FVSSTLIDTYGKCGEVLNARKQFDGLRDRNVVAWTAVLTAYLQNGHFEETLNLFTKMELE 324

Query: 311 DVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESA 370
           D  PN+ T    L+A A L  L  G  +H  IV +GF    ++G  LI MYSK G+I+S+
Sbjct: 325 DTRPNEFTFAVLLNACASLVALAYGDLLHGRIVMSGFKNHLIVGNALINMYSKSGNIDSS 384

Query: 371 LTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHA 430
             VF  +  + V  W AMI G   HG+  QAL +F  M   G  P  +TFIGVL+AC H 
Sbjct: 385 YNVFSNMMNRDVITWNAMICGYSHHGLGKQALLVFQDMMSAGECPNYVTFIGVLSACVHL 444

Query: 431 GLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP-MRPNFVIWM 489
            LV +G  YF+ ++  + +EP +EHY C+V +L R G L+EA++ +++   ++ + V W 
Sbjct: 445 ALVQEGFYYFDQIMKKFDVEPGLEHYTCMVALLGRAGLLDEAENFMKTTTQVKWDVVAWR 504

Query: 490 SLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRG 549
           +LL+    H N ++G+     +I++ P  +G Y +LSN++A A +WD V ++R++MK+R 
Sbjct: 505 TLLNACHIHRNYNLGKQITETVIQMDPHDVGTYTLLSNMHAKARKWDGVVKIRKLMKERN 564

Query: 550 FRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIE 609
            +K+PG+S ++ R   H FV    +HP++ +I  K+ ++   +K  G+ PD   VL  +E
Sbjct: 565 IKKEPGASWLDIRNNTHVFVSEGSNHPESTQIFEKVQQLLAMIKPLGYAPDVGVVLHDVE 624

Query: 610 DQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIV 669
           D+ +KE  L +HSE+LA+A+GL+ +    PIRI+KNLR+C+DCH   KL+S   NR IIV
Sbjct: 625 DE-QKEGYLSHHSEKLALAYGLMKIPPPGPIRIIKNLRMCDDCHIAVKLISKATNRLIIV 683

Query: 670 RDNSRFHHFKNGSCSCKDFW 689
           RD +RFHHF+ G C+C D W
Sbjct: 684 RDANRFHHFREGLCTCNDHW 703


>gi|413943701|gb|AFW76350.1| hypothetical protein ZEAMMB73_198527 [Zea mays]
          Length = 515

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 214/516 (41%), Positives = 308/516 (59%), Gaps = 10/516 (1%)

Query: 183 MDDKDLVSWNCLIDGYVKKGE----VEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIA 238
           M     VSW  LI  Y+  G     + VA + F      D F+   ++   ++   +E  
Sbjct: 1   MPHPSTVSWTALIAAYMDAGHALEAIGVARRAFASGMRPDSFTAVRVLTACARVADLETG 60

Query: 239 REIFYRMPNRNLVSWN-----AMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYEL 293
             ++        V+ +     A ++ Y+K G+++ A  +FD+M+ RD + W +M+ GY  
Sbjct: 61  EAVWAAARQEEGVAESVFVATAALDLYVKCGEMEKARSVFDEMKNRDAVAWGAMVGGYAS 120

Query: 294 NGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVL 353
           NG   EAL+L   M +    P+  T+V ALSA   L  L+ GR     +  +  + + VL
Sbjct: 121 NGHPREALDLFFAMQMEGAKPDCYTVVGALSACTRLGALDLGRQAVGMVHWDEVLGNPVL 180

Query: 354 GTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGM 413
           GT LI MY+KCGS   A  VF+ + ++ +  W AMI+GLGM G    A  L  +M + G+
Sbjct: 181 GTALIDMYAKCGSTSEAWMVFQQMLERDIIVWNAMILGLGMTGHEKIAFALVGQMKKSGV 240

Query: 414 KPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAK 473
           K    TFIG+L +C+H GLVNDGR+YF+ M + Y I P IEHYGC+VD+  R G LEEA 
Sbjct: 241 KLNDNTFIGLLCSCTHTGLVNDGRQYFHNMTHVYRISPRIEHYGCMVDLFSRAGLLEEAH 300

Query: 474 STIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAG 533
             I  MPM  N V+W +LL G + H N D+ E+A   LI++ P   G YV+LSNIY+ +G
Sbjct: 301 QLIGDMPMLANAVVWGALLGGCKIHRNADLAEHALKQLIRLEPWNSGNYVMLSNIYSNSG 360

Query: 534 QWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLK 593
           +W+  +++R  MK +G  K P SS +E  G +H+F VGD SHP +D+I++KL E+  ++K
Sbjct: 361 RWEDAAKLRLEMKAKGIEKVPASSWVELDGKVHKFYVGDDSHPLSDKIYAKLDELGMEMK 420

Query: 594 AAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCH 653
           A G+ P T  V+  +E++ EKE  L +HSE++AIAF LI  +    IR+ KNLRVC DCH
Sbjct: 421 AMGYEPTTEVVMFDVENE-EKENTLVHHSEKIAIAFSLITTEPGETIRVTKNLRVCTDCH 479

Query: 654 SVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           S  KL+S I  REI+VRDN+RFH F++G CSC D+W
Sbjct: 480 SAIKLISRITCREIVVRDNNRFHCFRDGHCSCNDYW 515



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 150/345 (43%), Gaps = 19/345 (5%)

Query: 82  LQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEG 141
           + HPS V +  LI  Y+    + EA+ +        + PD+FT   V+   AR+  ++ G
Sbjct: 1   MPHPSTVSWTALIAAYMDAGHALEAIGVARRAFASGMRPDSFTAVRVLTACARVADLETG 60

Query: 142 KQIHGLVFKL-GFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVK 200
           + +     +  G     FV ++ + +Y K GE++  R VFD M ++D V+W  ++ GY  
Sbjct: 61  EAVWAAARQEEGVAESVFVATAALDLYVKCGEMEKARSVFDEMKNRDAVAWGAMVGGYAS 120

Query: 201 KGEVEVAMKLFDEM----PDRDLFSWTCLVDGFSKCGKVEIARE----IFYRMPNRNLVS 252
            G    A+ LF  M       D ++    +   ++ G +++ R+    + +     N V 
Sbjct: 121 NGHPREALDLFFAMQMEGAKPDCYTVVGALSACTRLGALDLGRQAVGMVHWDEVLGNPVL 180

Query: 253 WNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDV 312
             A+I+ Y K G    A  +F  M  RD+I WN+MI G  + G    A  L+  M    V
Sbjct: 181 GTALIDMYAKCGSTSEAWMVFQQMLERDIIVWNAMILGLGMTGHEKIAFALVGQMKKSGV 240

Query: 313 LPNDATLVSALSAVAGLAVLNKGR-----WMHSYIVKNGFVVDGVLGTLLIQMYSKCGSI 367
             ND T +  L +     ++N GR       H Y +       G     ++ ++S+ G +
Sbjct: 241 KLNDNTFIGLLCSCTHTGLVNDGRQYFHNMTHVYRISPRIEHYGC----MVDLFSRAGLL 296

Query: 368 ESALTVFRAISK-KKVGHWTAMIVGLGMHGMATQALDLFNKMCRM 411
           E A  +   +        W A++ G  +H  A  A     ++ R+
Sbjct: 297 EEAHQLIGDMPMLANAVVWGALLGGCKIHRNADLAEHALKQLIRL 341


>gi|302820798|ref|XP_002992065.1| hypothetical protein SELMODRAFT_134581 [Selaginella moellendorffii]
 gi|300140187|gb|EFJ06914.1| hypothetical protein SELMODRAFT_134581 [Selaginella moellendorffii]
          Length = 771

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 228/662 (34%), Positives = 360/662 (54%), Gaps = 45/662 (6%)

Query: 67  HINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLP 126
            IN L  AR +F  ++    +V + +L+  Y  + R  EA  LF     R  L D  T  
Sbjct: 116 RINRLDDARELFHGMISGRDVVSWAILVAGYARHDRLEEASALF----RRMPLWDTVTCT 171

Query: 127 CVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK 186
            V++G A  G + E +++   +   G   D    +++++ Y K   +DL   +F  +  +
Sbjct: 172 SVLQGYAHNGHLAEAQELFDRIGGAG-DRDATACNAMIAAYGKNARVDLAEGLFAQIKLR 230

Query: 187 DLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMP 246
           +  SW+ L+  Y + G +++A K FD MP RD  ++T +    S  G++  ARE+   + 
Sbjct: 231 NAASWSLLLLTYAQNGHLDLAKKSFDRMPQRDSIAFTAMTAVLSDQGELRGAREMLRYLS 290

Query: 247 NRNLVSWNAMINGYMKAGDVDSACELF--------------------------------- 273
             ++++WNA++ GY + GD+D    LF                                 
Sbjct: 291 AVDVIAWNALLEGYSRTGDLDEVRRLFSAMEHRTVATTVVAGTLVNLYGKCGRVDDARRV 350

Query: 274 -DDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVL 332
            D M +R  ++W +MIA Y  NG   EA+ L + M +    P+D TL+S + + A L  L
Sbjct: 351 LDAMPVRTSVSWTAMIAAYAQNGNAAEAINLFQCMDLEGAEPSDITLISVVDSCAVLGTL 410

Query: 333 NKGRWMHSYIVKNG-FVVDGVLGTLLIQMYSKCGSIESALTVFRAIS--KKKVGHWTAMI 389
           + G+ +H+ I  +  F    +L   +I MY KCG++E A  VF ++    + V  WTAMI
Sbjct: 411 SLGKRIHARIRSSPLFSQSLMLLNAVITMYGKCGNLELAREVFESVPLRTRSVVTWTAMI 470

Query: 390 VGLGMHGMATQALDLFNKMC-RMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYG 448
                +G+  +A++LF +M    G +P  +TF+ VL+ACSH G +     +F  M  D+G
Sbjct: 471 RAYAQNGVGEEAIELFQEMVIDGGTEPNRVTFLSVLSACSHLGQLEQAWEHFCSMGPDFG 530

Query: 449 IEPTIEHYGCLVDILCRTGYLEEA-KSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYA 507
           + P  +HY CLVD+L R G L EA K  +       + V W++ LS  + +G+ +  + A
Sbjct: 531 VPPAGDHYCCLVDLLGRAGRLGEAEKLLLRHKDFEADVVCWIAFLSACQMNGDLERSQRA 590

Query: 508 ANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHE 567
           A  + ++ P+ +   V+LSN+YAA G+   V+ +R  MK  G +K  G S IE    +HE
Sbjct: 591 AKRVSELEPENVAGRVLLSNVYAAKGRRADVARIRNEMKSSGVKKFAGRSWIEINNRVHE 650

Query: 568 FVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAI 627
           F+V D SHP+  EI+S+L  +  ++K AG+VPDT  VL  ++++K+ +  L  HSERLA+
Sbjct: 651 FMVSDVSHPRKLEIYSELERLHREIKEAGYVPDTKMVLRDVDEEKKAQL-LGYHSERLAM 709

Query: 628 AFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKD 687
           A G+I+    + +R+VKNLRVC+DCH+ TK +S I  R+IIVRD SRFHHFK+G CSC D
Sbjct: 710 ALGIISTPPGTTLRVVKNLRVCSDCHAATKFISQIVGRQIIVRDTSRFHHFKDGVCSCGD 769

Query: 688 FW 689
           +W
Sbjct: 770 YW 771



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 95/365 (26%), Positives = 184/365 (50%), Gaps = 15/365 (4%)

Query: 138 IKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDG 197
           + E K +H  + +   G ++ + + L+ ++ K G+ D  R VF+ +   +  SW+C+I  
Sbjct: 23  LHEAKILHDEIARSPHGDNRRLTNLLIDLFGKCGDPDAARAVFNRVRLPNEYSWSCIIQA 82

Query: 198 YVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM-PNRNLVSWNAM 256
           YV    +  A  LFD MP  D F+W  ++  +++  +++ ARE+F+ M   R++VSW  +
Sbjct: 83  YVSSSRIHDARALFDSMPGFDAFTWNIMIAAYARINRLDDARELFHGMISGRDVVSWAIL 142

Query: 257 INGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPND 316
           + GY +   ++ A  LF  M + D +T  S++ GY  NG   EA EL +   IG     D
Sbjct: 143 VAGYARHDRLEEASALFRRMPLWDTVTCTSVLQGYAHNGHLAEAQELFDR--IGGAGDRD 200

Query: 317 ATLVSALSAVAGL-AVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFR 375
           AT  +A+ A  G  A ++    + + I     + +    +LL+  Y++ G ++ A   F 
Sbjct: 201 ATACNAMIAAYGKNARVDLAEGLFAQIK----LRNAASWSLLLLTYAQNGHLDLAKKSFD 256

Query: 376 AISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVND 435
            + ++    +TAM   L   G    A ++   +  + +    I +  +L   S  G +++
Sbjct: 257 RMPQRDSIAFTAMTAVLSDQGELRGAREMLRYLSAVDV----IAWNALLEGYSRTGDLDE 312

Query: 436 GRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGA 495
            RR F+ M  ++    T    G LV++  + G +++A+  +++MP+R + V W ++++  
Sbjct: 313 VRRLFSAM--EHRTVATTVVAGTLVNLYGKCGRVDDARRVLDAMPVRTS-VSWTAMIAAY 369

Query: 496 RNHGN 500
             +GN
Sbjct: 370 AQNGN 374


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/563 (37%), Positives = 332/563 (58%), Gaps = 11/563 (1%)

Query: 137 AIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLID 196
           A++EG+++H  + K  +    ++ + L+ +Y K   +   R VFD M ++++VSW  +I 
Sbjct: 25  AVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARHVFDEMRERNVVSWTAMIS 84

Query: 197 GYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNRN--- 249
           GY ++G    A+ LF +M   D     F++  ++   +     E+ R+I   +  RN   
Sbjct: 85  GYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQIHSHIFKRNYEN 144

Query: 250 -LVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETML 308
            +   +++++ Y KAG +  A  +F+ +  RD+++  ++I+GY   G   EALEL   + 
Sbjct: 145 HIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQ 204

Query: 309 IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIE 368
              +  N  T  S L+A++GLA L+ G+ +HS++++       VL   LI MYSKCG++ 
Sbjct: 205 REGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELPFYVVLQNSLIDMYSKCGNLN 264

Query: 369 SALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG-MKPTAITFIGVLNAC 427
            A  +F  +  + V  W AM+VG   HG   + + LF  M     +KP ++TF+ VL+ C
Sbjct: 265 YARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDSVTFLAVLSGC 324

Query: 428 SHAGLVNDGRRYFNMMINDYG-IEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFV 486
           SH GL + G   F+ M+N    IE  IEHYGC++D+L R G +EEA   I+ MP  P   
Sbjct: 325 SHGGLEDKGLEMFDEMMNGGDEIEAGIEHYGCVIDLLGRAGRVEEAFELIKKMPFEPTAA 384

Query: 487 IWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMK 546
           IW SLL   R H N +IGE+    L+++ P+  G YV+LSN+YA+AG+W+ V  VRE+M 
Sbjct: 385 IWGSLLGACRVHSNTNIGEFVGCRLLEIEPENAGNYVILSNLYASAGRWEDVRNVRELMM 444

Query: 547 KRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLL 606
           ++   K+PG S IE    +H F   D+SHP+ +E+  K+ E+  K K +G+VPD + VL 
Sbjct: 445 EKAVIKEPGRSWIELDQTIHTFYASDRSHPRREEVFLKVRELLVKFKESGYVPDQSCVLY 504

Query: 607 CIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNRE 666
            + D+++KE  L  HSE+LA+AFGLI+     P+R++KNLR+C DCH+  K +S +Y R+
Sbjct: 505 DV-DEEQKEKILLGHSEKLALAFGLISTSEGVPLRVIKNLRICVDCHNFAKFVSKVYGRQ 563

Query: 667 IIVRDNSRFHHFKNGSCSCKDFW 689
           + +RD +RFHH   G CSC D+W
Sbjct: 564 VSIRDKNRFHHVAGGICSCGDYW 586



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 94/320 (29%), Positives = 147/320 (45%), Gaps = 47/320 (14%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           +E Q++HA  +KT  +    +S+RL+ LY       L  AR +FD  ++  ++V +  +I
Sbjct: 27  REGQRVHAHMIKTCYLPPVYLSTRLIILYTKCEC--LGCARHVFDE-MRERNVVSWTAMI 83

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
             Y     + EAL LF  +L     P+ FT   V+         + G+QIH  +FK  + 
Sbjct: 84  SGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQIHSHIFKRNYE 143

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
              FV SSL+ MYAK G I   R VF+ + ++D+VS   +I GY + G  E A++LF  +
Sbjct: 144 NHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFCRL 203

Query: 215 PDRDLFS---------------------------------------WTCLVDGFSKCGKV 235
               + S                                          L+D +SKCG +
Sbjct: 204 QREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELPFYVVLQNSLIDMYSKCGNL 263

Query: 236 EIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIR-----DLITWNSMIAG 290
             AR+IF  MP R ++SWNAM+ GY K G      +LF  M        D +T+ ++++G
Sbjct: 264 NYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDSVTFLAVLSG 323

Query: 291 YELNGRFMEALELLETMLIG 310
               G   + LE+ + M+ G
Sbjct: 324 CSHGGLEDKGLEMFDEMMNG 343


>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
 gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
          Length = 710

 Score =  400 bits (1029), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 233/647 (36%), Positives = 338/647 (52%), Gaps = 80/647 (12%)

Query: 33  THKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDR------------ 80
           + ++ + +H   ++T       I +RL+ +Y       L YAR +FDR            
Sbjct: 39  SSRDARSVHGRLIQTPFCEEVFIQNRLIDVY--GKCGYLDYARKVFDRMSERNVFSFNSI 96

Query: 81  ------------------ILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDL-LDRFLLPD 121
                             ++       +N +I  +  + R  EAL  F  +  D F+L D
Sbjct: 97  ISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFVRMHRDDFVLND 156

Query: 122 NFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFD 181
            ++    +   +RL  +K G QIHGL+ K  +  D F+ S L+  Y+K G +   RRVFD
Sbjct: 157 -YSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGLVGCARRVFD 215

Query: 182 AMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDR------------------ 217
            M++K++VSWNCLI  Y + G    A++ F  M      PD                   
Sbjct: 216 GMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACATLAAFKE 275

Query: 218 ----------------DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYM 261
                           DL     LVD ++KCG+V  AR +F RMP RN VS   M++GY 
Sbjct: 276 GVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRNAVSETTMVSGYA 335

Query: 262 KAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVS 321
           K+  V +A  +F  ++ +D+++WN++IAGY  NG   EAL L   +    V P   T  +
Sbjct: 336 KSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRMLKRESVCPTHYTFGN 395

Query: 322 ALSAVAGLAVLNKGRWMHSYIVKNGFVV------DGVLGTLLIQMYSKCGSIESALTVFR 375
            L+A A LA L  GR  HS++VK+GF        D  +G  LI MY KCGS+E  L VF 
Sbjct: 396 LLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLRVFE 455

Query: 376 AISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVND 435
            + +K    W  MI+G   +G   +AL+LF KM   G KP  +T IG L ACSHAGLV +
Sbjct: 456 NMVEKDHVSWNTMIIGYAQNGYGMEALELFQKMLESGEKPDHVTMIGTLCACSHAGLVEE 515

Query: 436 GRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGA 495
           GRRYF  M  ++G+ P  +HY C+VD+L R G LEEAK  IESMP +P+ V+W SLLS  
Sbjct: 516 GRRYFFSMTKEHGLLPVKDHYTCMVDLLGRAGCLEEAKDLIESMPKQPDAVVWSSLLSAC 575

Query: 496 RNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPG 555
           + H N  +G+Y A  + ++ P + G YV+L+N+Y+  G+W     VR++M++RG  K PG
Sbjct: 576 KVHRNITLGKYVAEKIFEIDPTSSGPYVLLANMYSELGRWGDAVSVRKLMRRRGVVKQPG 635

Query: 556 SSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTT 602
            S I+ +  +H F+V DK HPQ  EI+S L  +   ++ AG+VPD +
Sbjct: 636 CSWIDIQSNVHVFMVKDKRHPQKKEIYSILKLLTKHMRQAGYVPDAS 682



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 121/442 (27%), Positives = 206/442 (46%), Gaps = 77/442 (17%)

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
           +L + ++ + +HG + +  F  + F+ + L+ +Y K G +D  R+VFD M ++++ S+N 
Sbjct: 36  KLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVFDRMSERNVFSFNS 95

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLV-- 251
           +I   ++ G V+ +  LF  MP++D  SW  ++ GF++  + E A + F RM   + V  
Sbjct: 96  IISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFVRMHRDDFVLN 155

Query: 252 -----------------SWNAMING--------------------YMKAGDVDSACELFD 274
                               A I+G                    Y K G V  A  +FD
Sbjct: 156 DYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGLVGCARRVFD 215

Query: 275 DMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNK 334
            ME +++++WN +I  YE NG  +EALE    M      P++ TL S +SA A LA   +
Sbjct: 216 GMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACATLAAFKE 275

Query: 335 GRWMHSYIVK-NGFVVDGVLGTLLIQMYSKCG---------------------------- 365
           G  +H+ +VK + F  D +LG  L+ MY+KCG                            
Sbjct: 276 GVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRNAVSETTMVSGYA 335

Query: 366 ---SIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIG 422
              S+++A ++F  I +K +  W A+I G   +G   +AL LF  + R  + PT  TF  
Sbjct: 336 KSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRMLKRESVCPTHYTFGN 395

Query: 423 VLNACSHAGLVNDGRRYFNMMIN-----DYGIEPTIEHYGCLVDILCRTGYLEEAKSTIE 477
           +LNA ++   +  GR+  + ++        G EP I     L+D+  + G +EE     E
Sbjct: 396 LLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLRVFE 455

Query: 478 SMPMRPNFVIWMSLLSGARNHG 499
           +M +  + V W +++ G   +G
Sbjct: 456 NM-VEKDHVSWNTMIIGYAQNG 476


>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 643

 Score =  400 bits (1029), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 219/596 (36%), Positives = 337/596 (56%), Gaps = 33/596 (5%)

Query: 124 TLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKF------------- 170
           +LP  +K  A LG       +H L  + G   D+F  ++L+++  K              
Sbjct: 51  SLPAALKSCAGLGLCTLAASLHALAIRSGSFADRFTANALLNLCIKLPGFHHPFGTNGPS 110

Query: 171 GEIDLG-------RRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDR 217
           GE  L        R+VFD M ++D VSWN LI G  +    + A+ +  EM      PD 
Sbjct: 111 GEGGLESAAYESMRKVFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDT 170

Query: 218 DLFSWTCLVDGFSKCGKVEIAREIF-YRMPN---RNLVSWNAMINGYMKAGDVDSACELF 273
             F+ + ++  F++C  ++    +  Y + N    ++   +++I+ Y     +D + ++F
Sbjct: 171 --FTLSTVLPIFAECADIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVF 228

Query: 274 DDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLN 333
           D     D + WNSM+AGY  NG   EAL +   ML   V P   T  S + A   L++L 
Sbjct: 229 DSFSDCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLR 288

Query: 334 KGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLG 393
            G+ +H+Y+++  F  +  + + LI MY KCG+++ A  VF  I    +  WTAMI+G  
Sbjct: 289 LGKQLHAYLIRARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYA 348

Query: 394 MHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTI 453
           +HG  T+A  LF +M    +KP  ITF+ VL ACSHAGLV++G +YFN M N YG  P++
Sbjct: 349 LHGPTTEAFVLFERMELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSL 408

Query: 454 EHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIK 513
           EH   L D L R G L+EA + I  M ++P   +W +LL   R H N  + E  A  + +
Sbjct: 409 EHCAALADTLGRAGDLDEAYNFISEMKIKPTSSVWSTLLRACRVHKNTVLAEEVAKKIFE 468

Query: 514 VAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDK 573
           + P ++G +V+LSN+Y+A+G+W++ +++R+ M+ +G +K+P  S IE +  LH F+  DK
Sbjct: 469 LEPKSMGSHVILSNMYSASGRWNEAAQLRKSMRIKGMKKEPACSWIEVKNKLHVFIAHDK 528

Query: 574 SHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLIN 633
           SHP  D I   L+    ++   G+VP+   VL  IE+++++E  L  HSE+LAI FG+I+
Sbjct: 529 SHPWYDRIIDALNVYSEQMIRQGYVPNMEDVLQDIEEEQKREV-LCGHSEKLAIVFGIIS 587

Query: 634 VKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
               + IR++KNLRVC DCH  TK +S I  REI+VRD +RFH FK+G+CSC DFW
Sbjct: 588 TPPGTTIRVMKNLRVCVDCHIATKFISKIVAREIVVRDVNRFHRFKDGNCSCGDFW 643



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 96/344 (27%), Positives = 172/344 (50%), Gaps = 11/344 (3%)

Query: 75  RSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAAR 134
           R +FD +L+  ++    L++ C   ++R  EAL++  ++     +PD FTL  V+   A 
Sbjct: 124 RKVFDEMLERDAVSWNTLILGC-AEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAE 182

Query: 135 LGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCL 194
              IK G  +HG   K GF  D FV SSL+ MYA   ++D   +VFD+  D D V WN +
Sbjct: 183 CADIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSM 242

Query: 195 IDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMP---- 246
           + GY + G VE A+ +F  M    +     +++ L+  F     + + +++   +     
Sbjct: 243 LAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARF 302

Query: 247 NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLET 306
           N N+   +++I+ Y K G+VD A  +F+ ++  D+++W +MI GY L+G   EA  L E 
Sbjct: 303 NDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFER 362

Query: 307 MLIGDVLPNDATLVSALSAVAGLAVLNKG-RWMHSYIVKNGFVVDGVLGTLLIQMYSKCG 365
           M +G+V PN  T ++ L+A +   +++ G ++ +S   + GFV        L     + G
Sbjct: 363 MELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAG 422

Query: 366 SIESALTVFRAISKKKVGH-WTAMIVGLGMHGMATQALDLFNKM 408
            ++ A      +  K     W+ ++    +H     A ++  K+
Sbjct: 423 DLDEAYNFISEMKIKPTSSVWSTLLRACRVHKNTVLAEEVAKKI 466



 Score = 50.1 bits (118), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 53/245 (21%), Positives = 97/245 (39%), Gaps = 34/245 (13%)

Query: 283 TWNSMIAGYELNGRFMEALELLETMLIGDVLPND---ATLVSALSAVAGLAVLNKGRWMH 339
           +W   I      G+F+ A+ L   M    V P     A+L +AL + AGL +      +H
Sbjct: 14  SWAYQIRMAASQGQFLHAISLFLQMR-ASVAPRSSVPASLPAALKSCAGLGLCTLAASLH 72

Query: 340 SYIVKNGFVVDGVLGTLLIQMYSKC---------------GSIESAL-----TVFRAISK 379
           +  +++G   D      L+ +  K                G +ESA       VF  + +
Sbjct: 73  ALAIRSGSFADRFTANALLNLCIKLPGFHHPFGTNGPSGEGGLESAAYESMRKVFDEMLE 132

Query: 380 KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRY 439
           +    W  +I+G   H    +AL +  +M R G  P   T   VL   +    +  G   
Sbjct: 133 RDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECADIKRG--- 189

Query: 440 FNMMINDYGIEPTIEH----YGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGA 495
             M+++ Y I+   ++       L+D+      ++ +    +S     + V+W S+L+G 
Sbjct: 190 --MVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFS-DCDAVLWNSMLAGY 246

Query: 496 RNHGN 500
             +G+
Sbjct: 247 AQNGS 251


>gi|449500413|ref|XP_004161091.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  400 bits (1029), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/550 (38%), Positives = 315/550 (57%), Gaps = 41/550 (7%)

Query: 178 RVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEI 237
           RVF ++  +D    + L+  Y K G  E A+KLFD+MP +DL SW  L+ GFS+C  + +
Sbjct: 64  RVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLISGFSRC--LHM 121

Query: 238 AREIFYRM-------PNR----NLVSW---------------------------NAMING 259
           +   FY M       PN     +++S                            N++IN 
Sbjct: 122 SLTAFYTMKFEMSVKPNEVTILSMISACNGALDAGKYIHGFGIKVGGTLEVKVANSLINM 181

Query: 260 YMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATL 319
           Y K+GD+ SAC LF+ +   + ++WNS+IA    NG   E ++    M    +  ++ T+
Sbjct: 182 YGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEGTI 241

Query: 320 VSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK 379
           ++ L A   L V      +H  +   GF     + T L+  Y+K G + ++  VF  +  
Sbjct: 242 LALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGF 301

Query: 380 KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRY 439
                WTAM+ G   HG+  +A+ LF  M   G++P  +TF  +L+ACSH+GLVN+G+ Y
Sbjct: 302 ADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNEGKSY 361

Query: 440 FNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
           FN+M   YGIEP ++HY C+VD+L R G L +A   I++MPM PN  +W +LL   R HG
Sbjct: 362 FNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVWGALLGACRVHG 421

Query: 500 NKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSI 559
           N ++G+  A +LI + P     Y++LSN+Y+A+  W   ++VR ++K+RG ++ PG SSI
Sbjct: 422 NIELGKEVAEHLINMEPLDPRNYIMLSNMYSASRSWKDAAKVRALLKERGLKRTPGYSSI 481

Query: 560 EHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELE 619
           E+    H F VGD+SHP+T++I+SKL E+  K++ AG+   T  VL  +E++  KE  + 
Sbjct: 482 EYGNKNHHFFVGDRSHPETEKIYSKLEELLGKIRKAGYSSKTEYVLQDVEEEV-KEDMIN 540

Query: 620 NHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFK 679
            HSE+LAIAFGL+  K    + I KNLR+C DCHS  KL+S I  R II+RD  RFHHF 
Sbjct: 541 KHSEKLAIAFGLLVSKEGEALIITKNLRICGDCHSTAKLISLIEKRTIIIRDPKRFHHFS 600

Query: 680 NGSCSCKDFW 689
           +G CSC D+W
Sbjct: 601 DGFCSCADYW 610



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 113/427 (26%), Positives = 197/427 (46%), Gaps = 57/427 (13%)

Query: 38  QQLHALSVKTNLIYHSG-ISSRLLSLYVDPHINNLHYAR---SIFDRILQHPSLVLYNLL 93
           +++HA   K+ L+Y  G I  +L++ Y     N L YA     +FD  + H  LV +N L
Sbjct: 59  REIHARVFKS-LLYRDGFIGDQLVTCY-----NKLGYAEDALKLFDD-MPHKDLVSWNSL 111

Query: 94  IKCYVFNQRSHEALTLFCDL-LDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLG 152
           I    F++  H +LT F  +  +  + P+  T+  +I  +A  GA+  GK IHG   K+G
Sbjct: 112 ISG--FSRCLHMSLTAFYTMKFEMSVKPNEVTILSMI--SACNGALDAGKYIHGFGIKVG 167

Query: 153 FGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFD 212
              +  V +SL++MY K G++    R+F+A+ D + VSWN +I   V  G     +  F+
Sbjct: 168 GTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFN 227

Query: 213 EMP----DRDLFSWTCLVDGFSKCGKVEIAREI----FYRMPNRNLVSWNAMINGYMKAG 264
           +M     ++D  +   L+      G  ++A  I    F       +    A+++ Y K G
Sbjct: 228 KMRRLGIEQDEGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLG 287

Query: 265 DVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS 324
            + ++  +F ++   D + W +M+AGY  +G   EA++L E+M    + P+  T    LS
Sbjct: 288 RLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLS 347

Query: 325 AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGH 384
           A +   ++N+G+   SY                  + S+   IE            +V H
Sbjct: 348 ACSHSGLVNEGK---SY----------------FNVMSEVYGIE-----------PRVDH 377

Query: 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMI 444
           ++ M+  LG  G+   A ++      M M+P A  +  +L AC   G +  G+     +I
Sbjct: 378 YSCMVDLLGRCGLLNDAYEVIQN---MPMEPNAGVWGALLGACRVHGNIELGKEVAEHLI 434

Query: 445 NDYGIEP 451
           N   ++P
Sbjct: 435 NMEPLDP 441



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 132/267 (49%), Gaps = 11/267 (4%)

Query: 236 EIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNG 295
           EI   +F  +  R+    + ++  Y K G  + A +LFDDM  +DL++WNS+I+G+    
Sbjct: 60  EIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLISGFS--- 116

Query: 296 RFME-ALELLETMLIG-DVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVL 353
           R +  +L    TM     V PN+ T++S +SA  G   L+ G+++H + +K G  ++  +
Sbjct: 117 RCLHMSLTAFYTMKFEMSVKPNEVTILSMISACNG--ALDAGKYIHGFGIKVGGTLEVKV 174

Query: 354 GTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGM 413
              LI MY K G + SA  +F AI       W ++I     +G A + +D FNKM R+G+
Sbjct: 175 ANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGI 234

Query: 414 KPTAITFIGVLNACSHAGLVNDGRRYFNMMI-NDYGIEPTIEHYGCLVDILCRTGYLEEA 472
           +    T + +L AC H G+         +M    +G + TI     L+D   + G L  +
Sbjct: 235 EQDEGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIA--TALLDTYAKLGRLSAS 292

Query: 473 KSTIESMPMRPNFVIWMSLLSGARNHG 499
                 +    + V W ++L+G   HG
Sbjct: 293 YGVFTEVGF-ADRVAWTAMLAGYAAHG 318



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 102/222 (45%), Gaps = 11/222 (4%)

Query: 282 ITWNSMIA-GYELNGRFMEALELLETM-LIGDVLPNDATLVSALSAVAGLAVLNKGRWMH 339
           + WNS I   + +  R    L L  +  L+      +A + + L AV     ++  R +H
Sbjct: 3   LRWNSSILYNFFIQSRTQYPLLLHRSFHLVRQCATPEAIVSALLIAVNSCPSISNCREIH 62

Query: 340 SYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLG--MHGM 397
           + + K+    DG +G  L+  Y+K G  E AL +F  +  K +  W ++I G    +H M
Sbjct: 63  ARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLISGFSRCLH-M 121

Query: 398 ATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYG 457
           +  A   +     M +KP  +T + +++AC+ A    D  +Y +      G    ++   
Sbjct: 122 SLTA--FYTMKFEMSVKPNEVTILSMISACNGA---LDAGKYIHGFGIKVGGTLEVKVAN 176

Query: 458 CLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
            L+++  ++G L  A    E++P  PN V W S+++    +G
Sbjct: 177 SLINMYGKSGDLTSACRLFEAIP-DPNTVSWNSIIAAQVTNG 217


>gi|297737154|emb|CBI26355.3| unnamed protein product [Vitis vinifera]
          Length = 550

 Score =  400 bits (1029), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 220/584 (37%), Positives = 335/584 (57%), Gaps = 38/584 (6%)

Query: 20  PSRLHWNILKFSSTHKETQQLHA-LSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIF 78
           P  LH  I+    T K  + +HA L +++++     + ++LL LY         YA  +F
Sbjct: 3   PPILH--IIHNCKTLKSLKSIHARLLIESSVASSEFVINKLLRLY--SRFGATDYAHKVF 58

Query: 79  DRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAI 138
           D I Q P+  L+  LI  YV N++  EA +LF  +    +   NFT+  V+K  ARL   
Sbjct: 59  DEITQ-PNAYLWTSLIHGYVENRQYDEAFSLFIQMRREPISVLNFTISSVLKALARLTRF 117

Query: 139 KEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGY 198
           K G+ ++G  F                               D M +KD+VSWN +I GY
Sbjct: 118 KGGQAVYGFAF-------------------------------DEMCEKDIVSWNMMISGY 146

Query: 199 VKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMIN 258
                V++A K FD MP+R++ SWT ++ G+ K G +  A+ +F  MP ++L SWN M++
Sbjct: 147 GNNDRVDIARKFFDRMPERNVVSWTSMICGYVKAGDMAEAQVLFDSMPVKDLASWNVMVS 206

Query: 259 GYMKAGDVDSACE-LFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDA 317
           GYM  GD  +    LFD M +++L+TW++MI GY  NG+ ++ALEL E     D+ P++ 
Sbjct: 207 GYMDIGDYTNGARCLFDQMPMKNLVTWSTMIGGYARNGQPLKALELFERFKEQDIKPDET 266

Query: 318 TLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAI 377
            ++  +SA + L +++    +    V    + D  + T LI MY+KCGSIE AL +F   
Sbjct: 267 FILGIISACSQLGIIDAAESIIHNYVGPSLLSDLRVFTSLIDMYAKCGSIEKALQMFEMA 326

Query: 378 SKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGR 437
             K +  ++ MI  L  HG+   A+ LF+KM R  +KP ++TF+GVL AC+H GLV++GR
Sbjct: 327 HPKDLLCYSTMIAALANHGLGRDAIFLFDKMQRANIKPDSVTFLGVLTACNHGGLVDEGR 386

Query: 438 RYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARN 497
           +YF  M  ++GI+P+ +HY C+VD+L R G LEEA + I +MP+ P+ V+W +LL+  R 
Sbjct: 387 KYFKQMTEEFGIQPSEKHYACVVDLLGRVGCLEEAYNLIRNMPIAPHSVVWGALLAACRV 446

Query: 498 HGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSS 557
           H N  + E AA  L K+ PD  G Y++LSNIYAAAG+W  V++VR  +++   RK+ GSS
Sbjct: 447 HCNVQLAEVAAAELFKIEPDNSGNYILLSNIYAAAGRWGSVAKVRAKIREHRVRKNRGSS 506

Query: 558 SIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDT 601
            IE   V+HEFV+GD SH  +D I   L  +   +K +G++ D+
Sbjct: 507 WIELSHVVHEFVMGDMSHTDSDSISLILYLLCEDMKLSGYLIDS 550


>gi|297740786|emb|CBI30968.3| unnamed protein product [Vitis vinifera]
          Length = 1434

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/423 (48%), Positives = 283/423 (66%), Gaps = 5/423 (1%)

Query: 254 NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL 313
           N +++ Y   G  +SA +LF+ M  R+L+TWNS+I GY LNGR  EAL L   M +  V 
Sbjct: 34  NTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVE 93

Query: 314 PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVL--GTLLIQMYSKCGSIESAL 371
           P+  T+VS LSA A L  L  GR  H Y+VK G  +DG L  G  L+ +Y+KCGSI  A 
Sbjct: 94  PDGFTMVSLLSACAELGALALGRRAHVYMVKVG--LDGNLHAGNALLDLYAKCGSIRQAH 151

Query: 372 TVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAG 431
            VF  + +K V  WT++IVGL ++G   +AL+LF ++ R G+ P+ ITF+GVL ACSH G
Sbjct: 152 KVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCG 211

Query: 432 LVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSL 491
           +V++G  YF  M  +YGI P IEHYGC+VD+L R G +++A   I++MPM+PN V+W +L
Sbjct: 212 MVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTL 271

Query: 492 LSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFR 551
           L     HG+  +GE A   L+++ P   G YV+LSN+YA+  +W  V +VR  M + G +
Sbjct: 272 LGACTIHGHLALGEVARAQLLQLEPKHSGDYVLLSNLYASEQRWSDVHKVRRTMLREGVK 331

Query: 552 KDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQ 611
           K PG S +E R  LHEFV+GD+SHPQT+EI+ KL+E+   LK  G+VP  + VL  IE++
Sbjct: 332 KTPGHSLVELRNRLHEFVMGDRSHPQTEEIYVKLAEITKLLKLEGYVPHISNVLADIEEE 391

Query: 612 KEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRD 671
            EKE  L  HSE++AIAF LIN  +  PIR+VKNLRVC DCH   KL+S +++REI+VRD
Sbjct: 392 -EKETALSYHSEKIAIAFMLINTAAGIPIRVVKNLRVCADCHLAIKLISKVFDREIVVRD 450

Query: 672 NSR 674
            SR
Sbjct: 451 RSR 453



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 149/312 (47%), Gaps = 51/312 (16%)

Query: 130 KGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLV 189
           +  A+L  ++EG+++H +  + GF    FV ++LV MYA  G  +   ++F+ M +++LV
Sbjct: 3   RAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLV 62

Query: 190 SWNCLIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGKVEIAREIFYRM 245
           +WN +I+GY   G    A+ LF EM  R    D F+   L+   ++ G + + R     M
Sbjct: 63  TWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYM 122

Query: 246 P----NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEAL 301
                + NL + NA+++ Y K G +  A ++FD+ME + +++W S+I G  +NG   EAL
Sbjct: 123 VKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEAL 182

Query: 302 ELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMY 361
           EL + +    ++P++ T V  L A                                    
Sbjct: 183 ELFKELERKGLMPSEITFVGVLYAC----------------------------------- 207

Query: 362 SKCGSIESALTVFRAISKK-----KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT 416
           S CG ++     F+ + ++     K+ H+  M+  LG  G+  QA +       M M+P 
Sbjct: 208 SHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQN---MPMQPN 264

Query: 417 AITFIGVLNACS 428
           A+ +  +L AC+
Sbjct: 265 AVVWRTLLGACT 276



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 163/334 (48%), Gaps = 25/334 (7%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           +E +++H+++++        + + L+ +Y      +   A  +F+ ++   +LV +N +I
Sbjct: 12  REGEKVHSIAIRNGFESLVFVQNTLVHMYA--ACGHAESAHKLFE-LMAERNLVTWNSVI 68

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
             Y  N R +EALTLF ++  R + PD FT+  ++   A LGA+  G++ H  + K+G  
Sbjct: 69  NGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLD 128

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
            +    ++L+ +YAK G I    +VFD M++K +VSW  LI G    G  + A++LF E+
Sbjct: 129 GNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKEL 188

Query: 215 PDRDLF----SWTCLVDGFSKCGKVEIAREIFYRMPNR-----NLVSWNAMINGYMKAGD 265
             + L     ++  ++   S CG V+   + F RM         +  +  M++   +AG 
Sbjct: 189 ERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGL 248

Query: 266 VDSACELFDDMEIR-DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPN---DATLVS 321
           V  A E   +M ++ + + W +++    ++G    AL  +    +  + P    D  L+S
Sbjct: 249 VKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHL--ALGEVARAQLLQLEPKHSGDYVLLS 306

Query: 322 ALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGT 355
            L A       ++ RW   + V+   + +GV  T
Sbjct: 307 NLYA-------SEQRWSDVHKVRRTMLREGVKKT 333



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 90/170 (52%), Gaps = 2/170 (1%)

Query: 325 AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGH 384
           A+A L  + +G  +HS  ++NGF     +   L+ MY+ CG  ESA  +F  ++++ +  
Sbjct: 4   AIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVT 63

Query: 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMI 444
           W ++I G  ++G   +AL LF +M   G++P   T + +L+AC+  G +  GRR    M+
Sbjct: 64  WNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMV 123

Query: 445 NDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSG 494
              G++  +     L+D+  + G + +A    + M  + + V W SL+ G
Sbjct: 124 K-VGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEK-SVVSWTSLIVG 171


>gi|449450646|ref|XP_004143073.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/550 (38%), Positives = 315/550 (57%), Gaps = 41/550 (7%)

Query: 178 RVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEI 237
           RVF ++  +D    + L+  Y K G  E A+KLFD+MP +DL SW  L+ GFS+C  + +
Sbjct: 64  RVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLISGFSRC--LHM 121

Query: 238 AREIFYRM-------PNR----NLVSW---------------------------NAMING 259
           +   FY M       PN     +++S                            N++IN 
Sbjct: 122 SLTAFYTMKFEMSVKPNEVTILSMISACSGALDAGKYIHGFGIKVGGTLEVKVANSLINM 181

Query: 260 YMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATL 319
           Y K+GD+ SAC LF+ +   + ++WNS+IA    NG   E ++    M    +  ++ T+
Sbjct: 182 YGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEGTI 241

Query: 320 VSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK 379
           ++ L A   L V      +H  +   GF     + T L+  Y+K G + ++  VF  +  
Sbjct: 242 LALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGF 301

Query: 380 KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRY 439
                WTAM+ G   HG+  +A+ LF  M   G++P  +TF  +L+ACSH+GLVN+G+ Y
Sbjct: 302 ADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNEGKSY 361

Query: 440 FNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
           FN+M   YGIEP ++HY C+VD+L R G L +A   I++MPM PN  +W +LL   R HG
Sbjct: 362 FNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVWGALLGACRVHG 421

Query: 500 NKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSI 559
           N ++G+  A +LI + P     Y++LSN+Y+A+  W   ++VR ++K+RG ++ PG SSI
Sbjct: 422 NIELGKEVAEHLINMEPLDPRNYIMLSNMYSASRSWKDAAKVRALLKERGLKRTPGYSSI 481

Query: 560 EHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELE 619
           E+    H F VGD+SHP+T++I+SKL E+  K++ AG+   T  VL  +E++  KE  + 
Sbjct: 482 EYGNKNHHFFVGDRSHPETEKIYSKLEELLGKIRKAGYSSKTEYVLQDVEEEV-KEDMIN 540

Query: 620 NHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFK 679
            HSE+LAIAFGL+  K    + I KNLR+C DCHS  KL+S I  R II+RD  RFHHF 
Sbjct: 541 KHSEKLAIAFGLLVSKEGEALIITKNLRICGDCHSTAKLISLIEKRTIIIRDPKRFHHFS 600

Query: 680 NGSCSCKDFW 689
           +G CSC D+W
Sbjct: 601 DGFCSCADYW 610



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 112/427 (26%), Positives = 196/427 (45%), Gaps = 57/427 (13%)

Query: 38  QQLHALSVKTNLIYHSG-ISSRLLSLYVDPHINNLHYAR---SIFDRILQHPSLVLYNLL 93
           +++HA   K+ L+Y  G I  +L++ Y     N L YA     +FD  + H  LV +N L
Sbjct: 59  REIHARVFKS-LLYRDGFIGDQLVTCY-----NKLGYAEDALKLFDD-MPHKDLVSWNSL 111

Query: 94  IKCYVFNQRSHEALTLFCDL-LDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLG 152
           I    F++  H +LT F  +  +  + P+  T+  +I   +  GA+  GK IHG   K+G
Sbjct: 112 ISG--FSRCLHMSLTAFYTMKFEMSVKPNEVTILSMISACS--GALDAGKYIHGFGIKVG 167

Query: 153 FGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFD 212
              +  V +SL++MY K G++    R+F+A+ D + VSWN +I   V  G     +  F+
Sbjct: 168 GTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFN 227

Query: 213 EMP----DRDLFSWTCLVDGFSKCGKVEIAREI----FYRMPNRNLVSWNAMINGYMKAG 264
           +M     ++D  +   L+      G  ++A  I    F       +    A+++ Y K G
Sbjct: 228 KMRRLGIEQDEGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLG 287

Query: 265 DVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS 324
            + ++  +F ++   D + W +M+AGY  +G   EA++L E+M    + P+  T    LS
Sbjct: 288 RLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLS 347

Query: 325 AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGH 384
           A +   ++N+G+   SY                  + S+   IE            +V H
Sbjct: 348 ACSHSGLVNEGK---SY----------------FNVMSEVYGIE-----------PRVDH 377

Query: 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMI 444
           ++ M+  LG  G+   A ++      M M+P A  +  +L AC   G +  G+     +I
Sbjct: 378 YSCMVDLLGRCGLLNDAYEVIQN---MPMEPNAGVWGALLGACRVHGNIELGKEVAEHLI 434

Query: 445 NDYGIEP 451
           N   ++P
Sbjct: 435 NMEPLDP 441



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 133/267 (49%), Gaps = 11/267 (4%)

Query: 236 EIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNG 295
           EI   +F  +  R+    + ++  Y K G  + A +LFDDM  +DL++WNS+I+G+    
Sbjct: 60  EIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLISGFS--- 116

Query: 296 RFME-ALELLETMLIG-DVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVL 353
           R +  +L    TM     V PN+ T++S +SA +G   L+ G+++H + +K G  ++  +
Sbjct: 117 RCLHMSLTAFYTMKFEMSVKPNEVTILSMISACSG--ALDAGKYIHGFGIKVGGTLEVKV 174

Query: 354 GTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGM 413
              LI MY K G + SA  +F AI       W ++I     +G A + +D FNKM R+G+
Sbjct: 175 ANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGI 234

Query: 414 KPTAITFIGVLNACSHAGLVNDGRRYFNMMI-NDYGIEPTIEHYGCLVDILCRTGYLEEA 472
           +    T + +L AC H G+         +M    +G + TI     L+D   + G L  +
Sbjct: 235 EQDEGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIA--TALLDTYAKLGRLSAS 292

Query: 473 KSTIESMPMRPNFVIWMSLLSGARNHG 499
                 +    + V W ++L+G   HG
Sbjct: 293 YGVFTEVGF-ADRVAWTAMLAGYAAHG 318



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 102/223 (45%), Gaps = 13/223 (5%)

Query: 282 ITWNSMIA-GYELNGRFMEALELLETM-LIGDVLPNDATLVSALSAVAGLAVLNKGRWMH 339
           + WNS I   + +  R    L L  +  L+      +A + + L AV     ++  R +H
Sbjct: 3   LRWNSSILYNFFIQSRTQYPLLLHRSFHLVRQCATPEAIVSALLIAVNSCPSISNCREIH 62

Query: 340 SYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLG--MHGM 397
           + + K+    DG +G  L+  Y+K G  E AL +F  +  K +  W ++I G    +H  
Sbjct: 63  ARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLISGFSRCLH-- 120

Query: 398 ATQALDLFNKM-CRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHY 456
              +L  F  M   M +KP  +T + +++ACS A    D  +Y +      G    ++  
Sbjct: 121 --MSLTAFYTMKFEMSVKPNEVTILSMISACSGA---LDAGKYIHGFGIKVGGTLEVKVA 175

Query: 457 GCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
             L+++  ++G L  A    E++P  PN V W S+++    +G
Sbjct: 176 NSLINMYGKSGDLTSACRLFEAIP-DPNTVSWNSIIAAQVTNG 217


>gi|226493697|ref|NP_001147320.1| selenium-binding protein-like [Zea mays]
 gi|195609890|gb|ACG26775.1| selenium-binding protein-like [Zea mays]
          Length = 605

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/443 (43%), Positives = 282/443 (63%), Gaps = 3/443 (0%)

Query: 249 NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETML 308
           ++VSW  M+ G +K G  D A  LFD M  R+L++WN+M++GY    RF++ALE+ + M 
Sbjct: 164 DVVSWTTMVGGLLKLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFLDALEVFDEMR 223

Query: 309 IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIE 368
              V  N     +A+ A  G   L +GR +H ++ ++G  +D  L T ++ MY KCG +E
Sbjct: 224 ARGVDGNVFVAATAVVACTGAGALARGREVHRWVEQSGIQMDEKLATAVVDMYCKCGCVE 283

Query: 369 SALTVFRAI--SKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNA 426
            A  VF A+  + K +  W  MI G  +HG    AL LF +M R G+ P  +T + VL A
Sbjct: 284 EAWRVFEALPLAAKGLTTWNCMIGGFAVHGRGQDALKLFGRMEREGVAPDDVTLVNVLTA 343

Query: 427 CSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFV 486
           C+HAG++++GR YFN +   YGIEP +EHYGC+VD+  R G LEEAK  I+ MPM P+  
Sbjct: 344 CAHAGMLSEGRHYFNYVPQRYGIEPKMEHYGCMVDLYGRAGRLEEAKKVIQDMPMEPDVG 403

Query: 487 IWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMK 546
           +  +L   ++ HG+ D+GE     +I++ P   G YV+L+N+ A AG+W+ V+ VR +M 
Sbjct: 404 VLGALFGASKIHGDVDLGEAIGWRVIELDPQNSGRYVLLANLLATAGRWEDVARVRRLMD 463

Query: 547 KRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLL 606
           +R   K+ G S IE +G + EF  G   HP+ +E+++  S+M  K++A G+VPDT  VL 
Sbjct: 464 ERNVSKEAGRSVIEVQGEVCEFQCGGLCHPRAEEVYAMASDMMRKIRAEGYVPDTRDVLH 523

Query: 607 CIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNRE 666
            I ++ EKE  L  HSE+LAIAFGL++ +    +RI KNLRVC DCH  TK +S ++ R+
Sbjct: 524 AIAEE-EKETPLLYHSEKLAIAFGLLHTRPGDTMRITKNLRVCRDCHEATKFVSRVFERQ 582

Query: 667 IIVRDNSRFHHFKNGSCSCKDFW 689
           I+VRD +RFHHFK+G CSCKD+W
Sbjct: 583 IVVRDRNRFHHFKDGQCSCKDYW 605



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 111/406 (27%), Positives = 180/406 (44%), Gaps = 58/406 (14%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQH---PSLVLYNLLI 94
           +Q H+  ++  +  H+  + RLLS       ++  YA     R+L H   P   L+N L 
Sbjct: 22  RQHHSQLIRLGVASHAAHARRLLSFLARDPDSHFPYA----SRLLAHHPDPHPALFNPLF 77

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
                   +  A  L   +L   L PD+FT P ++  A  L  +    Q+H L+ KLGF 
Sbjct: 78  SALP----TRHAARLLALMLSLPLRPDHFTFPQILPSAQPLHLVA---QLHALLLKLGFH 130

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK-DLVSWNCLIDGYVKKGEVEVAMKLFDE 213
                L++L++ Y      DL  RVF       D+VSW  ++ G +K G  + A  LFD 
Sbjct: 131 AHTQSLNALLAAYLANARPDLASRVFRGGGGALDVVSWTTMVGGLLKLGLFDDARVLFDG 190

Query: 214 MPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM--------------------------PN 247
           MP+R+L SW  ++ G+ K  +   A E+F  M                            
Sbjct: 191 MPERNLVSWNAMMSGYVKACRFLDALEVFDEMRARGVDGNVFVAATAVVACTGAGALARG 250

Query: 248 RNLVSW-------------NAMINGYMKAGDVDSACELFDDMEI--RDLITWNSMIAGYE 292
           R +  W              A+++ Y K G V+ A  +F+ + +  + L TWN MI G+ 
Sbjct: 251 REVHRWVEQSGIQMDEKLATAVVDMYCKCGCVEEAWRVFEALPLAAKGLTTWNCMIGGFA 310

Query: 293 LNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKN-GFVVDG 351
           ++GR  +AL+L   M    V P+D TLV+ L+A A   +L++GR   +Y+ +  G     
Sbjct: 311 VHGRGQDALKLFGRMEREGVAPDDVTLVNVLTACAHAGMLSEGRHYFNYVPQRYGIEPKM 370

Query: 352 VLGTLLIQMYSKCGSIESALTVFRAIS-KKKVGHWTAMIVGLGMHG 396
                ++ +Y + G +E A  V + +  +  VG   A+     +HG
Sbjct: 371 EHYGCMVDLYGRAGRLEEAKKVIQDMPMEPDVGVLGALFGASKIHG 416



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 84/201 (41%), Gaps = 8/201 (3%)

Query: 345 NGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDL 404
            G  +D V  T ++    K G  + A  +F  + ++ +  W AM+ G         AL++
Sbjct: 159 GGGALDVVSWTTMVGGLLKLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFLDALEV 218

Query: 405 FNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILC 464
           F++M   G+          + AC+ AG +  GR   +  +   GI+   +    +VD+ C
Sbjct: 219 FDEMRARGVDGNVFVAATAVVACTGAGALARGRE-VHRWVEQSGIQMDEKLATAVVDMYC 277

Query: 465 RTGYLEEAKSTIESMPMRP-NFVIWMSLLSGARNHGNKD--IGEYAANNLIKVAPDTIGC 521
           + G +EEA    E++P+       W  ++ G   HG     +  +       VAPD    
Sbjct: 278 KCGCVEEAWRVFEALPLAAKGLTTWNCMIGGFAVHGRGQDALKLFGRMEREGVAPDD--- 334

Query: 522 YVVLSNIYAAAGQWDKVSEVR 542
            V L N+  A      +SE R
Sbjct: 335 -VTLVNVLTACAHAGMLSEGR 354



 Score = 40.0 bits (92), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 59/128 (46%), Gaps = 6/128 (4%)

Query: 124 TLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAM 183
           T  C+I G A  G  ++  ++ G + + G   D   L ++++  A  G +  GR  F+ +
Sbjct: 301 TWNCMIGGFAVHGRGQDALKLFGRMEREGVAPDDVTLVNVLTACAHAGMLSEGRHYFNYV 360

Query: 184 DDK-----DLVSWNCLIDGYVKKGEVEVAMKLFDEMP-DRDLFSWTCLVDGFSKCGKVEI 237
             +      +  + C++D Y + G +E A K+  +MP + D+     L       G V++
Sbjct: 361 PQRYGIEPKMEHYGCMVDLYGRAGRLEEAKKVIQDMPMEPDVGVLGALFGASKIHGDVDL 420

Query: 238 AREIFYRM 245
              I +R+
Sbjct: 421 GEAIGWRV 428


>gi|225460338|ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Vitis vinifera]
          Length = 802

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 234/665 (35%), Positives = 362/665 (54%), Gaps = 19/665 (2%)

Query: 40  LHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVF 99
           +HAL   + L     +++ L+ +Y       + +AR +F+   +  S V +N LI  YV 
Sbjct: 142 IHALITVSGLGGPVLLTNSLIDMYCK--CGRIDWARLVFESADELDS-VSWNSLIAGYVR 198

Query: 100 NQRSHEALTLFCDLLDRFLLPDNFTLPCVIK--GAARLGAIKEGKQIHGLVFKLGFGFDK 157
              + E L L   +L   L  +++ L   +K  G+    +I+ GK +HG   KLG   D 
Sbjct: 199 IGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDV 258

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEV-----EVAMKLFD 212
            V ++L+  YAK G+++   ++F  M D ++V +N +I G+++   +       AM LF 
Sbjct: 259 VVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFF 318

Query: 213 EMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS----WNAMINGYMKAG 264
           EM  R +    F+++ ++   S     E  ++I  ++   NL S     NA++  Y  +G
Sbjct: 319 EMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSG 378

Query: 265 DVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS 324
            ++   + F      D+++W S+I G+  NG+F   L L   +L     P++ T+   LS
Sbjct: 379 SIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLS 438

Query: 325 AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGH 384
           A A LA +  G  +H+Y +K G     ++    I MY+KCG I+SA   F+      +  
Sbjct: 439 ACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVS 498

Query: 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMI 444
           W+ MI     HG A +A+DLF  M   G+ P  ITF+GVL ACSH GLV +G RYF +M 
Sbjct: 499 WSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMK 558

Query: 445 NDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIG 504
            D+GI P ++H  C+VD+L R G L EA+S I       + V+W SLLS  R H   D G
Sbjct: 559 KDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLSACRVHKATDTG 618

Query: 505 EYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGV 564
           +  A  +I++ P+    YV+L NIY  AG     +E+R +MK RG +K+PG S IE   V
Sbjct: 619 KRVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNLMKDRGVKKEPGLSWIEVGNV 678

Query: 565 LHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSER 624
           +H FV GD+SHP +  I+ +L EM  ++K   ++ D   V    E + +  + +  HSE+
Sbjct: 679 VHSFVAGDRSHPNSQVIYVQLEEMLEEIKKLDYI-DEKLVSDASEPKHKDNSMVSYHSEK 737

Query: 625 LAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCS 684
           LA+ FG+I++   +P+R++KNLR C  CH   KL S + NREII+RD  RFH F++GSCS
Sbjct: 738 LAVTFGIISLPRSAPVRVMKNLRSCWHCHETMKLFSRLENREIILRDPIRFHRFRDGSCS 797

Query: 685 CKDFW 689
           C D+W
Sbjct: 798 CGDYW 802



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 130/403 (32%), Positives = 201/403 (49%), Gaps = 20/403 (4%)

Query: 119 LP-DNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGR 177
           LP D+ T   +++ + R G++  GK  H  + K  F    F+L++L+ MY K GE D+ +
Sbjct: 15  LPLDSVTYTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETDVAK 74

Query: 178 RVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDE--MPDRDLFSWTCLVDGFSKCGK- 234
           ++FD M  +++VSWN LI GY + G     M LF E  M D  L  +T   +  S CG+ 
Sbjct: 75  KLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFT-FSNALSVCGRT 133

Query: 235 --VEIAREIFYRMPNRNL----VSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMI 288
             + + R I   +    L    +  N++I+ Y K G +D A  +F+  +  D ++WNS+I
Sbjct: 134 LDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLI 193

Query: 289 AGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAG--LAVLNKGRWMHSYIVKNG 346
           AGY   G   E L LL  ML   +  N   L SAL A      + +  G+ +H   VK G
Sbjct: 194 AGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLG 253

Query: 347 FVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVG-LGMHGM----ATQA 401
             +D V+GT L+  Y+K G +E A  +F+ +    V  + AMI G L M  M    A +A
Sbjct: 254 LDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEA 313

Query: 402 LDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVD 461
           + LF +M   GMKP+  TF  +L ACS       G++  +  I  Y ++        LV+
Sbjct: 314 MYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQ-IHAQIFKYNLQSDEFIGNALVE 372

Query: 462 ILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIG 504
           +   +G +E+      S P + + V W SL+ G   +G  + G
Sbjct: 373 LYSLSGSIEDGLKCFHSTP-KLDVVSWTSLIVGHVQNGQFEGG 414


>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
          Length = 624

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/580 (35%), Positives = 328/580 (56%), Gaps = 10/580 (1%)

Query: 118 LLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGR 177
           L P        I   A+   + + ++IHG +    F  D F+ +SL+ +Y K G +    
Sbjct: 47  LAPTPRVYHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEAH 106

Query: 178 RVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCG 233
           +VFD M  KD+VSW  LI GY +      A+ L   M         F++  L+       
Sbjct: 107 KVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYA 166

Query: 234 KVEIAREIFYRMP----NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIA 289
              I  +I         + ++   +A+++ Y + G +D A  +FD ++ ++ ++WN++I+
Sbjct: 167 DSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALIS 226

Query: 290 GYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVV 349
           G+   G    AL +   M          T  S  S +AG+  L +G+W+H+++VK+   +
Sbjct: 227 GFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKL 286

Query: 350 DGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMC 409
              +G  ++ MY+K GS+  A  VF  +  K +  W +M+     +G+  +A+  F +M 
Sbjct: 287 TAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMR 346

Query: 410 RMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYL 469
           + G+    ITF+ +L ACSH GLV +G+ YF+M I +Y +EP IEHY  +VD+L R G L
Sbjct: 347 KSGIYLNQITFLCILTACSHGGLVKEGKHYFDM-IKEYNLEPEIEHYVTVVDLLGRAGLL 405

Query: 470 EEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIY 529
             A   I  MPM P   +W +LL+  R H N  +G++AA+++ ++ PD  G  V+L NIY
Sbjct: 406 NYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFQLDPDDSGPPVLLYNIY 465

Query: 530 AAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMR 589
           A+ G WD  + VR+MMK  G +K+P  S +E    +H FV  D +HP+ +EI+    E+ 
Sbjct: 466 ASTGHWDAAARVRKMMKATGVKKEPACSWVEIGNSVHMFVANDDTHPRAEEIYKMWDEIS 525

Query: 590 NKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVC 649
            K++  G+VPD   VLL + D++E+EA L+ HSE++A+AF LI + + + IRI+KN+R+C
Sbjct: 526 MKIRKEGYVPDMDYVLLHV-DEQEREANLQYHSEKIALAFALIQMPAGATIRIMKNIRIC 584

Query: 650 NDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            DCHS  K +S ++ REI+VRD +RFHHF NGSCSC D+W
Sbjct: 585 GDCHSAFKYISKVFEREIVVRDTNRFHHFSNGSCSCGDYW 624



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 90/331 (27%), Positives = 160/331 (48%), Gaps = 10/331 (3%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           A  +FD+ ++   +V +  LI  Y  N    EA+ L   +L     P+ FT   ++K A 
Sbjct: 105 AHKVFDK-MRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAG 163

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
                  G QIH L  K  +  D +V S+L+ MYA+ G++D+   VFD +D K+ VSWN 
Sbjct: 164 AYADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNA 223

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRM--PN 247
           LI G+ +KG+ E A+ +F EM         F+++ +  G +  G +E  + +   M    
Sbjct: 224 LISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSR 283

Query: 248 RNLVSW--NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLE 305
           + L ++  N M++ Y K+G +  A ++F+ +  +DL+TWNSM+  +   G   EA+   E
Sbjct: 284 QKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFE 343

Query: 306 TMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCG 365
            M    +  N  T +  L+A +   ++ +G+     I +     +      ++ +  + G
Sbjct: 344 EMRKSGIYLNQITFLCILTACSHGGLVKEGKHYFDMIKEYNLEPEIEHYVTVVDLLGRAG 403

Query: 366 SIESALT-VFRAISKKKVGHWTAMIVGLGMH 395
            +  AL  +F+   +     W A++    MH
Sbjct: 404 LLNYALVFIFKMPMEPTAAVWGALLAACRMH 434



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 93/203 (45%), Gaps = 4/203 (1%)

Query: 301 LELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQM 360
           L  L+ +  G++ P      + ++A A    L+  R +H ++  + F  D  L   LI +
Sbjct: 36  LHDLDHLDSGELAPTPRVYHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHL 95

Query: 361 YSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITF 420
           Y KCGS+  A  VF  + KK +  WT++I G   + M  +A+ L   M +   KP   TF
Sbjct: 96  YCKCGSVVEAHKVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTF 155

Query: 421 IGVLNACSHAGLVNDGRRYFNMMIN-DYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM 479
             +L A         G +   + +  D+  +  +     L+D+  R G ++ A +  + +
Sbjct: 156 ASLLKAAGAYADSGIGGQIHALAVKCDWHEDVYVG--SALLDMYARCGKMDMATAVFDKL 213

Query: 480 PMRPNFVIWMSLLSGARNHGNKD 502
             + N V W +L+SG    G+ +
Sbjct: 214 DSK-NGVSWNALISGFARKGDGE 235


>gi|296089484|emb|CBI39303.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 234/665 (35%), Positives = 362/665 (54%), Gaps = 19/665 (2%)

Query: 40  LHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVF 99
           +HAL   + L     +++ L+ +Y       + +AR +F+   +  S V +N LI  YV 
Sbjct: 63  IHALITVSGLGGPVLLTNSLIDMYC--KCGRIDWARLVFESADELDS-VSWNSLIAGYVR 119

Query: 100 NQRSHEALTLFCDLLDRFLLPDNFTLPCVIK--GAARLGAIKEGKQIHGLVFKLGFGFDK 157
              + E L L   +L   L  +++ L   +K  G+    +I+ GK +HG   KLG   D 
Sbjct: 120 IGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDV 179

Query: 158 FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEV-----EVAMKLFD 212
            V ++L+  YAK G+++   ++F  M D ++V +N +I G+++   +       AM LF 
Sbjct: 180 VVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFF 239

Query: 213 EMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS----WNAMINGYMKAG 264
           EM  R +    F+++ ++   S     E  ++I  ++   NL S     NA++  Y  +G
Sbjct: 240 EMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSG 299

Query: 265 DVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS 324
            ++   + F      D+++W S+I G+  NG+F   L L   +L     P++ T+   LS
Sbjct: 300 SIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLS 359

Query: 325 AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGH 384
           A A LA +  G  +H+Y +K G     ++    I MY+KCG I+SA   F+      +  
Sbjct: 360 ACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVS 419

Query: 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMI 444
           W+ MI     HG A +A+DLF  M   G+ P  ITF+GVL ACSH GLV +G RYF +M 
Sbjct: 420 WSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMK 479

Query: 445 NDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIG 504
            D+GI P ++H  C+VD+L R G L EA+S I       + V+W SLLS  R H   D G
Sbjct: 480 KDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLSACRVHKATDTG 539

Query: 505 EYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGV 564
           +  A  +I++ P+    YV+L NIY  AG     +E+R +MK RG +K+PG S IE   V
Sbjct: 540 KRVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNLMKDRGVKKEPGLSWIEVGNV 599

Query: 565 LHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSER 624
           +H FV GD+SHP +  I+ +L EM  ++K   ++ D   V    E + +  + +  HSE+
Sbjct: 600 VHSFVAGDRSHPNSQVIYVQLEEMLEEIKKLDYI-DEKLVSDASEPKHKDNSMVSYHSEK 658

Query: 625 LAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCS 684
           LA+ FG+I++   +P+R++KNLR C  CH   KL S + NREII+RD  RFH F++GSCS
Sbjct: 659 LAVTFGIISLPRSAPVRVMKNLRSCWHCHETMKLFSRLENREIILRDPIRFHRFRDGSCS 718

Query: 685 CKDFW 689
           C D+W
Sbjct: 719 CGDYW 723



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 113/362 (31%), Positives = 172/362 (47%), Gaps = 21/362 (5%)

Query: 183 MDDKDLVSWNCLIDGYVKKGEVEVAMKLFDE--MPDRDLFSWTCLVDGFSKCGK---VEI 237
           M  +++VSWN LI GY + G     M LF E  M D  L  +T   +  S CG+   + +
Sbjct: 1   MPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFT-FSNALSVCGRTLDLRL 59

Query: 238 AREIFYRMPNRNL----VSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYEL 293
            R I   +    L    +  N++I+ Y K G +D A  +F+  +  D ++WNS+IAGY  
Sbjct: 60  GRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVR 119

Query: 294 NGRFMEALELLETMLIGDVLPNDATLVSALSAVAG--LAVLNKGRWMHSYIVKNGFVVDG 351
            G   E L LL  ML   +  N   L SAL A      + +  G+ +H   VK G  +D 
Sbjct: 120 IGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDV 179

Query: 352 VLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVG-LGMHGM----ATQALDLFN 406
           V+GT L+  Y+K G +E A  +F+ +    V  + AMI G L M  M    A +A+ LF 
Sbjct: 180 VVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFF 239

Query: 407 KMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRT 466
           +M   GMKP+  TF  +L ACS       G++  +  I  Y ++        LV++   +
Sbjct: 240 EMQSRGMKPSEFTFSSILKACSTIEAFECGKQ-IHAQIFKYNLQSDEFIGNALVELYSLS 298

Query: 467 GYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVA--PDTIGCYVV 524
           G +E+      S P + + V W SL+ G   +G  + G    + L+     PD     ++
Sbjct: 299 GSIEDGLKCFHSTP-KLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIM 357

Query: 525 LS 526
           LS
Sbjct: 358 LS 359


>gi|297600629|ref|NP_001049519.2| Os03g0241800 [Oryza sativa Japonica Group]
 gi|108707104|gb|ABF94899.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674356|dbj|BAF11433.2| Os03g0241800 [Oryza sativa Japonica Group]
          Length = 810

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 217/603 (35%), Positives = 332/603 (55%), Gaps = 41/603 (6%)

Query: 86  SLVLYNLLIKCYVFNQRSHEALTLFCDLLDR--FLLPDNFTLPCVIKGAARLGAIKEGKQ 143
           + V +N+L++         +AL LF  +  +     PD++T P  +K  A    +  G+Q
Sbjct: 84  TTVFFNVLLRGLTAASLHRDALLLFASMRPQGHACFPDHYTYPLALKSCAATDGLVLGRQ 143

Query: 144 IHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGE 203
           IH    +LG   + FV  S +SMYA+ G  D                     D Y     
Sbjct: 144 IHSSTARLGLDGNVFVAHSAISMYARCGRPD---------------------DAY----- 177

Query: 204 VEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM-------PNRNLVSWNAM 256
                ++F+EM  RD+ SW  ++ GF+  G    A ++F  +       P+   ++    
Sbjct: 178 -----QMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILP 232

Query: 257 INGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPND 316
             G  +  D+     +FD+M  + LI+WN+M+A Y  N   +EA+EL   M    + P+ 
Sbjct: 233 SMGKARVEDIALLKGVFDEMRFKGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDA 292

Query: 317 ATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRA 376
            TL + L +   ++ L+ G+ +H  I +       +L   L+ MY+ CG ++ A  VF +
Sbjct: 293 VTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDS 352

Query: 377 ISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDG 436
           +  + V  WT++I   G HG   +A+DLF KMC  G++P +I F+ +L ACSHAGL++ G
Sbjct: 353 MGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMG 412

Query: 437 RRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGAR 496
           + YF  M +++ I P +EHY C+VD+L R G + EA   I  MP++PN  +W +LL   R
Sbjct: 413 KHYFYSMTSEFHIAPKLEHYACMVDLLGRAGCIREAYDFIMVMPIKPNERVWGALLGACR 472

Query: 497 NHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGS 556
            H N DIG  AA++L+++AP   G YV+LSNIYA AG+W  VS VR +M+ +G +K PG 
Sbjct: 473 IHSNMDIGLLAADSLLRLAPKQTGYYVLLSNIYARAGRWADVSMVRSVMESKGIKKLPGV 532

Query: 557 SSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEA 616
           S+ E    +H F +GD SHPQ+  I+ KLSE+  +++  G+ P+    L  +E++ +KE 
Sbjct: 533 SNAELGDRVHTFHIGDTSHPQSKMIYKKLSELLRRIREMGYNPEVEATLHDVEEE-DKEG 591

Query: 617 ELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFH 676
            L  HSE+LAIAF LIN    +PIRI  NLR C+DCH   KL+S I  REII++D +R H
Sbjct: 592 HLSVHSEKLAIAFLLINTNPGTPIRITMNLRTCSDCHHAAKLISTIAGREIILKDVNRIH 651

Query: 677 HFK 679
           + K
Sbjct: 652 YMK 654


>gi|125553513|gb|EAY99222.1| hypothetical protein OsI_21180 [Oryza sativa Indica Group]
          Length = 818

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 229/668 (34%), Positives = 363/668 (54%), Gaps = 17/668 (2%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           +  + +HA ++K  L  H  +   L  +Y +    ++  A  + D  +   S+V +N ++
Sbjct: 155 RRGRAVHAYALKLALDAHPLVPGFLAGMYAEN--ADVAAATRVLD-AMGAGSVVPWNAVV 211

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
            C        +AL L   +      P+  T   V+ G +R G  +E   +   + K G  
Sbjct: 212 ACCARLGLVDDALELAARMSRSGPEPNVATWNTVLSGCSRHGRDREALGVVASMLKQGLR 271

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRV----FDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
            D   +SSL+   A  G +  G  +         + D+ +   L+D Y K G ++ A K+
Sbjct: 272 PDATTVSSLLKSVANTGLLRHGMEIHCFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKV 331

Query: 211 FDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMP-NR---NLVSWNAMINGYMKAGDV 266
           FD +  R+L +W  LV G++  G+ +IA E+   M  NR   ++ +WN +I GY   G  
Sbjct: 332 FDALEHRNLTTWNSLVAGYANAGRFDIALELVELMKKNRLDPDITTWNGLITGYSMNGQS 391

Query: 267 DSACELFDDME----IRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSA 322
             A  L   ++      ++++W S+I+G   NG + ++      M    V P+  T+   
Sbjct: 392 SQAVLLLRQIKAAGVTPNVVSWTSLISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVL 451

Query: 323 LSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKV 382
           L A AGLA+  KG+ +H + ++  +  D V+ T LI MYSK GS+ SA  +F +I +K +
Sbjct: 452 LRACAGLALQKKGKELHCFALRRAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNL 511

Query: 383 GHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNM 442
               AM+ GL +HG   +A++LF+ M   G+KP +ITF  +L AC   GLV +G  YF+ 
Sbjct: 512 VLCNAMLTGLAVHGQGREAIELFHDMWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDG 571

Query: 443 MINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKD 502
           M   YG++PT E+Y C+VD+L R GYL+EA   IE  P+ P    W +LL+G   HGN  
Sbjct: 572 METKYGVKPTTENYACMVDLLARCGYLDEAMDFIERSPIDPGASHWGALLTGCSIHGNLA 631

Query: 503 IGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHR 562
           + E AA NL ++ P     Y+++ N+Y     +D+   ++  MK RG    PG S I+  
Sbjct: 632 LAEVAARNLFRLEPYNSANYLLMMNLYEYERMYDEAESLKYAMKARGVDSRPGWSWIQIE 691

Query: 563 GVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHS 622
             +H F V  K HP+T EI+ +L  +  ++K AG+VPDT+ +   ++++ EKE  L  H+
Sbjct: 692 QGIHVFEVDGKPHPETAEIYEELIRLVFQIKKAGYVPDTSCIAYNVQEE-EKEKLLLGHT 750

Query: 623 ERLAIAFGLINV-KSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNG 681
           E+LAI +GLI    SR+P+R++KN R+CNDCH V K +S + +R+II+RD  RFHHF +G
Sbjct: 751 EKLAITYGLIRSDASRAPVRVMKNTRMCNDCHEVAKHISSLCDRQIILRDAVRFHHFVDG 810

Query: 682 SCSCKDFW 689
            CSC D+W
Sbjct: 811 KCSCNDYW 818


>gi|414591914|tpg|DAA42485.1| TPA: pentatricopeptide repeat protein PPR986-12 [Zea mays]
          Length = 548

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 195/450 (43%), Positives = 291/450 (64%), Gaps = 12/450 (2%)

Query: 251 VSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIG 310
           V  N++++ Y   G   +A  +F  +  R L++WN+ +     NG  + AL+L   M   
Sbjct: 100 VVANSLVHFYASCGRPGAALAVFRRVPDRSLVSWNTAVDALAGNGDHLAALDLFREMQRD 159

Query: 311 --DVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVK-----NGFVVDGVLGTLLIQMYSK 363
             D+ P+  T+ S L A A    L+ G + H+ +++     +    D ++   L+ +Y K
Sbjct: 160 RPDLAPDAYTVQSVLGACAATGALSLGLYAHALLLRELGGASAVSRDVLINNSLVDLYGK 219

Query: 364 CGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRM-GMKPTAITFIG 422
           CG++E A  VF  +S++ +  W AM++ L  HG    +LDLF++M R+ G+ P AITF+ 
Sbjct: 220 CGAVELARQVFDRMSERDLASWNAMVLALANHGRVQDSLDLFDRMTRVEGLVPNAITFVA 279

Query: 423 VLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMR 482
           VL+AC+H GLV++GRRYF  M++++GI P IEHYGC+VDIL R G++EEA   +  M  R
Sbjct: 280 VLSACNHGGLVDEGRRYFAAMVSEHGIRPRIEHYGCMVDILARAGFIEEALDVVAGMNCR 339

Query: 483 PNFVIWMSLLSGA--RNHGNKDIGEYAANNLIKVAPDTI-GCYVVLSNIYAAAGQWDKVS 539
           P+ +IW SLL     RN G  ++ E  A   + V  D + G YV+LS +YA+A +W+ V 
Sbjct: 340 PDSIIWRSLLDACCKRNAG-LELSEAMAKLALDVPDDAVSGVYVLLSRVYASAQRWNDVG 398

Query: 540 EVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVP 599
            +R++M + GF+K+PG SSIE  G +H+FV GD SHPQ++EI+ KL E++ +L +AG+ P
Sbjct: 399 MIRQLMSQEGFKKEPGFSSIEMDGSVHQFVAGDTSHPQSEEIYVKLDEIQQRLTSAGYKP 458

Query: 600 DTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLL 659
           D ++  +  +  + K A L  HSERLAI+FGL+N    +PIRI+KNLRVC DCH+++KL+
Sbjct: 459 DLSEAPMVADIDRTKGATLRLHSERLAISFGLLNATPGAPIRILKNLRVCKDCHTISKLI 518

Query: 660 SGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           S +YN EIIVRD  RFHHFK+GSCSCKD+W
Sbjct: 519 SKLYNVEIIVRDRIRFHHFKDGSCSCKDYW 548



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 133/284 (46%), Gaps = 27/284 (9%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL-DRF-LLPDNFTLPCVIKG 131
           A ++F R+    SLV +N  +     N     AL LF ++  DR  L PD +T+  V+  
Sbjct: 118 ALAVFRRVPDR-SLVSWNTAVDALAGNGDHLAALDLFREMQRDRPDLAPDAYTVQSVLGA 176

Query: 132 AARLGAIKEGKQIHGLVFK-LG----FGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK 186
            A  GA+  G   H L+ + LG       D  + +SLV +Y K G ++L R+VFD M ++
Sbjct: 177 CAATGALSLGLYAHALLLRELGGASAVSRDVLINNSLVDLYGKCGAVELARQVFDRMSER 236

Query: 187 DLVSWNCLIDGYVKKGEVEVAMKLFDEMPD-----RDLFSWTCLVDGFSKCGKVEIAREI 241
           DL SWN ++      G V+ ++ LFD M        +  ++  ++   +  G V+  R  
Sbjct: 237 DLASWNAMVLALANHGRVQDSLDLFDRMTRVEGLVPNAITFVAVLSACNHGGLVDEGRRY 296

Query: 242 FYRMPNRNLVS-----WNAMINGYMKAGDVDSACELFDDMEIR-DLITWNSMIAGYELNG 295
           F  M + + +      +  M++   +AG ++ A ++   M  R D I W S++   +   
Sbjct: 297 FAAMVSEHGIRPRIEHYGCMVDILARAGFIEEALDVVAGMNCRPDSIIWRSLL---DACC 353

Query: 296 RFMEALELLETM--LIGDVLPNDATLVSALSAVAGLAVLNKGRW 337
           +    LEL E M  L  DV P+DA  VS +  +      +  RW
Sbjct: 354 KRNAGLELSEAMAKLALDV-PDDA--VSGVYVLLSRVYASAQRW 394


>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 224/657 (34%), Positives = 371/657 (56%), Gaps = 10/657 (1%)

Query: 39  QLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYV 98
           Q+HA+ VK    + + + + L+ +Y+   +  +  A ++FD ++   S V +N++I  Y 
Sbjct: 226 QVHAMIVKNGFEFTTFVCNALICMYLKSEM--VGDAEAVFDSMVVRDS-VTWNIMIGGYA 282

Query: 99  FNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKF 158
                 E   +F  +    +          +K  ++   +   KQ+H  V K G+ F + 
Sbjct: 283 AIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQD 342

Query: 159 VLSSLVSMYAKFGEIDLGRRVFDAMDDK-DLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR 217
           + ++L+  Y+K   +D   ++F   D   ++V+W  +I G+V+    E A+ LF +M   
Sbjct: 343 IRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSRE 402

Query: 218 DL----FSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELF 273
            +    F+++ ++ G       ++  +I      +      A+++ Y+K G+V  +  +F
Sbjct: 403 GVRPNHFTYSTVLAGKPSSLLSQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVF 462

Query: 274 DDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAG-LAVL 332
             +  +D++ W++M+ G        +A+E+   ++   V PN+ T  S ++A +   A +
Sbjct: 463 YSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATV 522

Query: 333 NKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGL 392
             G+ +H+  VK+G      + + L+ MYSK G+IESA  VF    ++ +  W +MI G 
Sbjct: 523 EHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGY 582

Query: 393 GMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT 452
           G HG A +AL++F  M   G+    +TFIGVL AC+HAGLV +G +YFN+MI DY I+  
Sbjct: 583 GQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKK 642

Query: 453 IEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLI 512
           IEHY C+VD+  R G  ++A   I  MP   +  IW +LL+  R H N ++G+ AA  L+
Sbjct: 643 IEHYSCMVDLYSRAGMFDKAMDIINGMPFPASPTIWRTLLAACRVHRNLELGKLAAEKLV 702

Query: 513 KVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGD 572
            + P+    YV+LSNI+A AG W++ + VR++M +R  +K+ G S IE +  +  F+ GD
Sbjct: 703 SLQPNDAVGYVLLSNIHAVAGNWEEKAHVRKLMDERKVKKEAGCSWIEIKNRIFSFLAGD 762

Query: 573 KSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLI 632
            SHP +D +++KL E+  KLK  G+ PDT  V   +E++  KEA L  HSERLAIA+GLI
Sbjct: 763 VSHPFSDLVYAKLEELSIKLKDMGYQPDTNYVFHDVEEE-HKEAILSQHSERLAIAYGLI 821

Query: 633 NVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
            +   +PI+I KNLR+C DCH+V +L+S I  R +IVRD++RFHHFK G CSC  +W
Sbjct: 822 ALPPGAPIQIEKNLRICGDCHNVIELISLIEERTLIVRDSNRFHHFKGGVCSCGGYW 878



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 144/501 (28%), Positives = 232/501 (46%), Gaps = 39/501 (7%)

Query: 4   QTLQHSSPIHALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLY 63
           +TLQ+ + I      L S +H +I  F   H               +YH  +    +SL 
Sbjct: 8   RTLQNKAKITVGNGRLQSSIH-HIKHFLHPH-------------GFLYHQSLP--FISLP 51

Query: 64  VDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNF 123
             P      YA  +FD       +  YN L+  +  N    EAL LF DL    L  D  
Sbjct: 52  SRPR-----YAHQLFDET-PLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGL 105

Query: 124 TLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAM 183
           TL C +K    L     G+Q+H    K GF  D  V +SLV MY K  + + GR +FD M
Sbjct: 106 TLSCALKVCGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEM 165

Query: 184 DDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP----DRDLFSWTCLVDGFSKCGKVEIAR 239
             K++VSW  L+ GY + G  +  + L ++M     + + F++  ++   +    +E   
Sbjct: 166 GIKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGV 225

Query: 240 EIFYRMPNRNLVSW-----NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELN 294
           ++ + M  +N   +     NA+I  Y+K+  V  A  +FD M +RD +TWN MI GY   
Sbjct: 226 QV-HAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAI 284

Query: 295 GRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLG 354
           G ++E  ++   M +  V  +     +AL   +    LN  + +H  +VKNG+     + 
Sbjct: 285 GFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIR 344

Query: 355 TLLIQMYSKCGSIESALTVFR-AISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGM 413
           T L+  YSKC S++ A  +F  A +   V  WTAMI G   +    +A+DLF +M R G+
Sbjct: 345 TALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGV 404

Query: 414 KPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAK 473
           +P   T+  VL     + L    + +  ++   Y   P++     L+D   +TG + E+ 
Sbjct: 405 RPNHFTYSTVLAGKPSSLL---SQLHAQIIKAYYEKVPSVA--TALLDAYVKTGNVVESA 459

Query: 474 STIESMPMRPNFVIWMSLLSG 494
               S+P + + V W ++L+G
Sbjct: 460 RVFYSIPAK-DIVAWSAMLTG 479



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/340 (23%), Positives = 151/340 (44%), Gaps = 19/340 (5%)

Query: 176 GRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKV 235
             ++FD    KD+  +N L+  + +      A+ LF     +DL S    VDG +    +
Sbjct: 57  AHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLF-----KDLHSSGLGVDGLTLSCAL 111

Query: 236 EIAREIFYRMPNR-------------NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLI 282
           ++   +F ++  R             ++    ++++ YMK  D +    +FD+M I++++
Sbjct: 112 KVCGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVV 171

Query: 283 TWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYI 342
           +W S+++GY  NG   E + L+  M +  V PN  T  + L A+A  +++  G  +H+ I
Sbjct: 172 SWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMI 231

Query: 343 VKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQAL 402
           VKNGF     +   LI MY K   +  A  VF ++  +    W  MI G    G   +  
Sbjct: 232 VKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGF 291

Query: 403 DLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDI 462
            +F++M   G+K +   F   L  CS    +N  ++    ++ + G E   +    L+  
Sbjct: 292 QMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKN-GYEFAQDIRTALMVT 350

Query: 463 LCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKD 502
             +   ++EA           N V W +++ G   + N +
Sbjct: 351 YSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNE 390



 Score = 47.4 bits (111), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 81/185 (43%), Gaps = 33/185 (17%)

Query: 31  SSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLY 90
           ++T +  +Q+HA +VK+       +SS LL++Y      N+  A  +F R  +   +V +
Sbjct: 519 AATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKK--GNIESAEKVFTR-QEERDIVSW 575

Query: 91  NLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFK 150
           N +I  Y  +  + +AL +F  + ++ L  D+ T   V+      G ++EG++   ++ K
Sbjct: 576 NSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIK 635

Query: 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
                                         D   DK +  ++C++D Y + G  + AM +
Sbjct: 636 ------------------------------DYHIDKKIEHYSCMVDLYSRAGMFDKAMDI 665

Query: 211 FDEMP 215
            + MP
Sbjct: 666 INGMP 670


>gi|242055643|ref|XP_002456967.1| hypothetical protein SORBIDRAFT_03g046490 [Sorghum bicolor]
 gi|241928942|gb|EES02087.1| hypothetical protein SORBIDRAFT_03g046490 [Sorghum bicolor]
          Length = 785

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 225/671 (33%), Positives = 371/671 (55%), Gaps = 21/671 (3%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           +  + +HA++V   L     +S+ L S+Y       +  AR +FD   +H   V +N L+
Sbjct: 120 RTGKAVHAMTVLDGLGNGVFLSNSLASMYAS--CGEMGEARRVFDAAEEHDD-VSWNSLL 176

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKE--GKQIHGLVFKLG 152
             YV      E L +F  +    L  ++F L  +IK  A    +     + +HG V K G
Sbjct: 177 SGYVRAGAREETLKVFSLMCHHGLGWNSFALGSIIKCCASGSDVGRHIAEAVHGCVVKAG 236

Query: 153 FGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGY------VKKGEVEV 206
              D F+ S+++ MYAK G +     +F ++ D +++ +N +I G+      V K     
Sbjct: 237 LDADLFLASAMIDMYAKRGALTNAVALFKSVPDPNVIVFNAMIAGFCRDEAAVGKEVSRE 296

Query: 207 AMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNRNL----VSWNAMIN 258
           A+ L+ EM  R +    F+++ ++   +  G+    ++I  ++   +        +A+I+
Sbjct: 297 ALSLYSEMQSRGMQPSEFTFSSILRACNLAGEFGFGKQIHGQVLKHSFHDDDYIGSALID 356

Query: 259 GYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDAT 318
            Y  +G ++     F  +  +D++TW SMI+G   N  F +AL L +  +   + P+  T
Sbjct: 357 LYSDSGCMEDGYRCFRSLPKQDIVTWTSMISGCVQNELFEKALRLFQESICYGLKPDLFT 416

Query: 319 LVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS 378
           + S ++A A LAV   G  +    +K GF     +G   I M ++ G +++    F+ + 
Sbjct: 417 MSSVMNACASLAVARTGEQIQCLAIKYGFNRFTAMGNSFIHMCARSGDVDAVTRRFQEME 476

Query: 379 KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR 438
            + V  W+A+I     HG A  AL +FN+M    + P  +TF+ VL ACSH GLV+DG R
Sbjct: 477 SRDVVSWSAVISSHAQHGCARDALRIFNEMMNAKVAPNEVTFLNVLTACSHGGLVDDGLR 536

Query: 439 YFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNH 498
           Y+ +M N+YG+ PTI+H  C+VD+L R G L +A++ I       + V+W SLL+  R H
Sbjct: 537 YYEIMKNEYGLSPTIKHVTCVVDLLGRAGRLADAEAFIRDSAFHDDAVVWRSLLASCRIH 596

Query: 499 GNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSS 558
           G+ + G+  A+ ++ + P +   YV+L N+Y  AG+    S+ R++MK+RG +K+PG S 
Sbjct: 597 GDMERGQLVADQIMDLEPTSSASYVILYNMYLDAGELSLASKTRDLMKERGVKKEPGLSW 656

Query: 559 IEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAEL 618
           IE R  +H FV GDKSHP+++ I+ KL+EM +K++   +  + +     I   ++    +
Sbjct: 657 IELRSGVHSFVAGDKSHPESNAIYKKLAEMLSKIEKLANTDNASTGSDGISSSEQN--LV 714

Query: 619 ENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHF 678
             HSE++A+AFG+I++   +PIR++KNLRVC DCHS  KL+SG  NREII+RD  RFHHF
Sbjct: 715 GCHSEKIAVAFGMIHLPQSAPIRVMKNLRVCRDCHSTMKLISGSENREIILRDGIRFHHF 774

Query: 679 KNGSCSCKDFW 689
           + GSCSC D+W
Sbjct: 775 RGGSCSCGDYW 785



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 139/476 (29%), Positives = 216/476 (45%), Gaps = 25/476 (5%)

Query: 71  LHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRF-LLPDNFTLPCVI 129
           LH AR I +  +   + V YNLLI  Y        AL  F        L  D FT    +
Sbjct: 53  LHAARLIDE--MPRRNAVSYNLLISSYSRAGLPGRALETFARARAAAGLRVDRFTYAAAL 110

Query: 130 KGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLV 189
              +R   ++ GK +H +    G G   F+ +SL SMYA  GE+   RRVFDA ++ D V
Sbjct: 111 AACSRALDLRTGKAVHAMTVLDGLGNGVFLSNSLASMYASCGEMGEARRVFDAAEEHDDV 170

Query: 190 SWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDG-FSKC--GKVEIAREIFYRMP 246
           SWN L+ GYV+ G  E  +K+F  M    L  W     G   KC     ++ R I   + 
Sbjct: 171 SWNSLLSGYVRAGAREETLKVFSLMCHHGL-GWNSFALGSIIKCCASGSDVGRHIAEAVH 229

Query: 247 --------NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFM 298
                   + +L   +AMI+ Y K G + +A  LF  +   ++I +N+MIAG+  +   +
Sbjct: 230 GCVVKAGLDADLFLASAMIDMYAKRGALTNAVALFKSVPDPNVIVFNAMIAGFCRDEAAV 289

Query: 299 ------EALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV 352
                 EAL L   M    + P++ T  S L A         G+ +H  ++K+ F  D  
Sbjct: 290 GKEVSREALSLYSEMQSRGMQPSEFTFSSILRACNLAGEFGFGKQIHGQVLKHSFHDDDY 349

Query: 353 LGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG 412
           +G+ LI +YS  G +E     FR++ K+ +  WT+MI G   + +  +AL LF +    G
Sbjct: 350 IGSALIDLYSDSGCMEDGYRCFRSLPKQDIVTWTSMISGCVQNELFEKALRLFQESICYG 409

Query: 413 MKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEA 472
           +KP   T   V+NAC+   +   G +   + I  YG           + +  R+G ++  
Sbjct: 410 LKPDLFTMSSVMNACASLAVARTGEQIQCLAIK-YGFNRFTAMGNSFIHMCARSGDVDAV 468

Query: 473 KSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLI--KVAPDTIGCYVVLS 526
               + M  R + V W +++S    HG         N ++  KVAP+ +    VL+
Sbjct: 469 TRRFQEMESR-DVVSWSAVISSHAQHGCARDALRIFNEMMNAKVAPNEVTFLNVLT 523


>gi|297824049|ref|XP_002879907.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325746|gb|EFH56166.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 565

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/566 (36%), Positives = 327/566 (57%), Gaps = 41/566 (7%)

Query: 164 VSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWT 223
           +SMY+K G++     +++ M  K+ +S N LI+GYV+ G++  A K+FDEMPDR L +W 
Sbjct: 1   MSMYSKLGDLPSAVALYERMRKKNFMSSNILINGYVRAGDLVSARKVFDEMPDRKLTTWN 60

Query: 224 CLVDGFSKCGKVEIAREIFYRM------PNR----------------------------- 248
            ++ G  +    E    +F  M      P+                              
Sbjct: 61  AMIAGLIQFEYNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYAIKY 120

Query: 249 ----NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELL 304
               +LV  +++ + YM+ G +     +   M +R+L+ WN++I G   NG     L L 
Sbjct: 121 GLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLY 180

Query: 305 ETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKC 364
           + M I    PN  T V+ LS+ + LA+  +G+ +H+  +K G      + + LI MYSKC
Sbjct: 181 KMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKC 240

Query: 365 GSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMC-RMGMKPTAITFIGV 423
           G +  A   F     +    W++MI   G HG   +A+ LFN M  +  M+   + F+ +
Sbjct: 241 GCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIKLFNSMAEQTEMEVNEVAFLNL 300

Query: 424 LNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRP 483
           L ACSH+GL + G   F+MM+  YG +P ++HY C+VD+L R G L++A++ I+SMP++P
Sbjct: 301 LYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIKSMPIKP 360

Query: 484 NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVRE 543
           + VIW +LLS    H N ++ +     ++++ P+   CYV+L+N++A+A +W  VSEVR+
Sbjct: 361 DPVIWKTLLSACNIHKNAEMAQKVFKEILEIDPNDSACYVLLANVHASAKRWRDVSEVRK 420

Query: 544 MMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQ 603
            M+ +  +K+ G S  EH+G +H+F +GD+S  ++ EI+S L E+  ++K  G+ PDT  
Sbjct: 421 SMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTAS 480

Query: 604 VLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIY 663
           VL  + D++EKE++L  HSE+LA+AF L+ +   +PIRI+KNLRVC+DCH   K +S I 
Sbjct: 481 VLHDM-DEEEKESDLVQHSEKLAVAFALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIM 539

Query: 664 NREIIVRDNSRFHHFKNGSCSCKDFW 689
           NREI +RD SRFHHF NG CSC D+W
Sbjct: 540 NREITLRDGSRFHHFINGKCSCGDYW 565



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 97/378 (25%), Positives = 175/378 (46%), Gaps = 24/378 (6%)

Query: 56  SSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLD 115
           S+ L++ YV     +L  AR +FD +     L  +N +I   +  + + E L+LF ++  
Sbjct: 28  SNILINGYV--RAGDLVSARKVFDEMPDR-KLTTWNAMIAGLIQFEYNEEGLSLFREMHG 84

Query: 116 RFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDL 175
               PD +TL  V  G+A L ++  G+QIHG   K G   D  V SSL  MY + G++  
Sbjct: 85  LGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYAIKYGLELDLVVNSSLAHMYMRNGKLQD 144

Query: 176 GRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGF 229
           G  V  +M  ++LV+WN LI G  + G  E  + L+  M      P++  F     V   
Sbjct: 145 GEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITF-----VTVL 199

Query: 230 SKCGKV-------EIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLI 282
           S C  +       +I  E      +  +   +++I+ Y K G +  A + F + E  D +
Sbjct: 200 SSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEV 259

Query: 283 TWNSMIAGYELNGRFMEALELLETML-IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSY 341
            W+SMI+ Y  +G+  EA++L  +M    ++  N+   ++ L A +   + +KG  +   
Sbjct: 260 MWSSMISAYGFHGQGDEAIKLFNSMAEQTEMEVNEVAFLNLLYACSHSGLKDKGLELFDM 319

Query: 342 IV-KNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS-KKKVGHWTAMIVGLGMHGMAT 399
           +V K GF       T ++ +  + G ++ A  + +++  K     W  ++    +H  A 
Sbjct: 320 MVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIKSMPIKPDPVIWKTLLSACNIHKNAE 379

Query: 400 QALDLFNKMCRMGMKPTA 417
            A  +F ++  +    +A
Sbjct: 380 MAQKVFKEILEIDPNDSA 397


>gi|302820671|ref|XP_002992002.1| hypothetical protein SELMODRAFT_134463 [Selaginella moellendorffii]
 gi|300140244|gb|EFJ06970.1| hypothetical protein SELMODRAFT_134463 [Selaginella moellendorffii]
          Length = 620

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 215/614 (35%), Positives = 330/614 (53%), Gaps = 45/614 (7%)

Query: 120 PDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRV 179
           PD       +   A  G +  G+QIH  V   G   +  + +SLV+MY K  ++    +V
Sbjct: 8   PDKVVFVIALDACAASGELDHGRQIHSSVVDSGLTSNIIISNSLVNMYGKCQDVPCAEKV 67

Query: 180 FDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAR 239
           FD M  +D+VSW  ++  Y + G    A+ +F+ MP +D  SW  +++      K + A 
Sbjct: 68  FDGMLLRDVVSWTAMLAVYAQNGCWSQALHVFEAMPRKDDVSWNAVINASVGNSKFQDAL 127

Query: 240 EIFYRMPNRNLVS----------------------------------------WNAMING 259
           E+F+ M    L S                                         N+++N 
Sbjct: 128 ELFHGMELEGLRSNEFTLLSLLEACGGLEDLKLARQIHARAAAGGFGGNSTAVGNSVVNM 187

Query: 260 YMKAGDVDSACELFDDMEIRDLITWNSMIAGY--ELNGRFMEALELLETMLIGDVLPNDA 317
           Y + G +    + FD +E + L+ W+ M+A Y    +G    A +  + M    + P + 
Sbjct: 188 YARCGSLLDTKKAFDSLEEKGLVAWSIMLAAYAQSKDGSGRRAFKFFQEMEAEGIKPGEV 247

Query: 318 TLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDG-VLGTLLIQMYSKCGSIESALTVFRA 376
           T VSAL A A +A L  GR MH     +GFV    VLG  +I MY KCGS   A  VF  
Sbjct: 248 TFVSALDACAAMATLEHGRSMHRRAAASGFVETSLVLGNTIINMYGKCGSPSDAKLVFDQ 307

Query: 377 ISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDG 436
           + +K +  W ++IV    +G A +AL    +M   G  P + T + +L   SHAGL+  G
Sbjct: 308 MPEKCLISWNSLIVAYAHNGHALEALSSLQEMLLQGFDPDSGTSVSILYGLSHAGLLERG 367

Query: 437 RRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPM-RPNFVIWMSLLSGA 495
             +F   I D+G+EP+     CLVD+L R G+L+ A+  I + P  + + + WM+LL+  
Sbjct: 368 VEHFRSSIQDHGLEPSSGQLKCLVDLLARKGFLDAAEELILASPACQADTIAWMTLLAAC 427

Query: 496 RNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPG 555
           +++G+   G   A  + ++ P   G +VVL+N+YA+ G+W   S +R+MM++   +K+PG
Sbjct: 428 KSYGDPQRGIRCAERVFELEPQHSGSFVVLANLYASVGRWSDASRIRKMMERMSVKKEPG 487

Query: 556 SSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKE 615
            S IE  G +HEF+ G+  HP+  EI  +L ++  +++ AG+VPDTT V+  +E + +KE
Sbjct: 488 CSWIELSGSVHEFISGESKHPKIREICEELEKLTLRMREAGYVPDTTNVVHDVE-EGDKE 546

Query: 616 AELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRF 675
             L  HSERLAI FGL++ +    IR+VKNLRVC+DCH+ TK++S +  REI+VRD+SRF
Sbjct: 547 EILSRHSERLAIVFGLMSTRPGETIRVVKNLRVCSDCHAATKIISSVVGREIVVRDSSRF 606

Query: 676 HHFKNGSCSCKDFW 689
           HHFK+G CSC DFW
Sbjct: 607 HHFKHGQCSCGDFW 620



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 95/371 (25%), Positives = 169/371 (45%), Gaps = 16/371 (4%)

Query: 88  VLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGL 147
           V +N +I   V N +  +AL LF  +    L  + FTL  +++    L  +K  +QIH  
Sbjct: 108 VSWNAVINASVGNSKFQDALELFHGMELEGLRSNEFTLLSLLEACGGLEDLKLARQIHAR 167

Query: 148 VFKLGFGFDKFVL-SSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYV--KKGEV 204
               GFG +   + +S+V+MYA+ G +   ++ FD++++K LV+W+ ++  Y   K G  
Sbjct: 168 AAAGGFGGNSTAVGNSVVNMYARCGSLLDTKKAFDSLEEKGLVAWSIMLAAYAQSKDGSG 227

Query: 205 EVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMP-----NRNLVSWNA 255
             A K F EM    +     ++   +D  +    +E  R +  R         +LV  N 
Sbjct: 228 RRAFKFFQEMEAEGIKPGEVTFVSALDACAAMATLEHGRSMHRRAAASGFVETSLVLGNT 287

Query: 256 MINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPN 315
           +IN Y K G    A  +FD M  + LI+WNS+I  Y  NG  +EAL  L+ ML+    P+
Sbjct: 288 IINMYGKCGSPSDAKLVFDQMPEKCLISWNSLIVAYAHNGHALEALSSLQEMLLQGFDPD 347

Query: 316 DATLVSALSAVAGLAVLNKG-RWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESA--LT 372
             T VS L  ++   +L +G     S I  +G          L+ + ++ G +++A  L 
Sbjct: 348 SGTSVSILYGLSHAGLLERGVEHFRSSIQDHGLEPSSGQLKCLVDLLARKGFLDAAEELI 407

Query: 373 VFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGL 432
           +     +     W  ++     +G   + +    ++  +  + +  +F+ + N  +  G 
Sbjct: 408 LASPACQADTIAWMTLLAACKSYGDPQRGIRCAERVFELEPQHSG-SFVVLANLYASVGR 466

Query: 433 VNDGRRYFNMM 443
            +D  R   MM
Sbjct: 467 WSDASRIRKMM 477



 Score = 39.7 bits (91), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 96/231 (41%), Gaps = 33/231 (14%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           A+ +FD+ +    L+ +N LI  Y  N  + EAL+   ++L +   PD+ T   ++ G +
Sbjct: 301 AKLVFDQ-MPEKCLISWNSLIVAYAHNGHALEALSSLQEMLLQGFDPDSGTSVSILYGLS 359

Query: 134 RLGAIKEGK-------QIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD-- 184
             G ++ G        Q HGL    G       L  LV + A+ G +D    +  A    
Sbjct: 360 HAGLLERGVEHFRSSIQDHGLEPSSG------QLKCLVDLLARKGFLDAAEELILASPAC 413

Query: 185 DKDLVSWNCLIDGYVKKGE----VEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIA-- 238
             D ++W  L+      G+    +  A ++F+  P     S+  L + ++  G+   A  
Sbjct: 414 QADTIAWMTLLAACKSYGDPQRGIRCAERVFELEPQHS-GSFVVLANLYASVGRWSDASR 472

Query: 239 -REIFYRMPNRNL--VSW-------NAMINGYMKAGDVDSACELFDDMEIR 279
            R++  RM  +     SW       +  I+G  K   +   CE  + + +R
Sbjct: 473 IRKMMERMSVKKEPGCSWIELSGSVHEFISGESKHPKIREICEELEKLTLR 523


>gi|357117491|ref|XP_003560501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Brachypodium distachyon]
          Length = 652

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 203/476 (42%), Positives = 301/476 (63%), Gaps = 3/476 (0%)

Query: 216 DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDD 275
           D+  F    L+  +  CG V  AR++F  M  ++++ W +++  Y ++ D+ SA E+F  
Sbjct: 178 DKHRFVENSLIGAYIACGDVGAARKVFDEMVVKDVICWTSIVVAYSRSRDMGSAEEVFGQ 237

Query: 276 MEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKG 335
             ++D++ W +M+ GY  N   M+ALE+ + M    +  ++ +L  A+SA A L  + + 
Sbjct: 238 CPVKDMVAWTAMVTGYAQNAMPMKALEVFDRMTALGIGIDEVSLTGAISACAQLGAVKRA 297

Query: 336 RWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMH 395
            W+      NGF ++ V+G+ L+ MY+KCG I+ A  VF  + +K V  +++M+VGL  H
Sbjct: 298 AWVQEIAEMNGFGMNVVVGSGLVDMYAKCGLIDEACKVFDGMQEKNVYTYSSMVVGLASH 357

Query: 396 GMATQALDLFNKMCRMG-MKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIE 454
           G A +A+ LF  M R   + P  +TFIGVL ACSHAG+V DGR YF  M + YGI P+ +
Sbjct: 358 GRAREAIALFKDMVRRADVAPNHVTFIGVLTACSHAGMVTDGRYYFAQMKDKYGILPSAD 417

Query: 455 HYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKV 514
           HY C+VD+L R G ++EA   + SM + P+  +W +LL   R HG  ++ + AA +L K+
Sbjct: 418 HYTCMVDLLGRAGLVDEALDLVRSMTVEPHGGVWGALLGACRIHGKTEVAKVAAEHLFKL 477

Query: 515 APDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHR-GVLHEFVVGDK 573
            P+ IG YV+LSN  AAAG+WD+VS+VR++M+ R  +K P  S  E R G++H+F  GD 
Sbjct: 478 EPEGIGNYVLLSNTLAAAGKWDEVSKVRKVMRSRRLKKVPAVSWFEGRDGLVHQFFAGDN 537

Query: 574 SHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLIN 633
           SHP+T EI   L E+  KLK AG+VP  + ++  + ++ EKE  L  HSE+LA+ FGL+ 
Sbjct: 538 SHPRTREIKKALLELVAKLKHAGYVPILSSIVYDVSNE-EKERLLMGHSEKLALLFGLLT 596

Query: 634 VKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           + SR  IRIVKNLR+C+DCH   +L+S     EIIVRDN RFHHFK+G CSC  FW
Sbjct: 597 LGSRCTIRIVKNLRICDDCHLFIRLVSRFEPVEIIVRDNMRFHHFKDGECSCGGFW 652



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 97/384 (25%), Positives = 166/384 (43%), Gaps = 80/384 (20%)

Query: 142 KQIHGLVFKLGFGFDK--FVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYV 199
           +  H + F +G GFDK  FV +SL+  Y   G++   R+VFD M  KD++ W  ++  Y 
Sbjct: 165 QAAHAVSFLVG-GFDKHRFVENSLIGAYIACGDVGAARKVFDEMVVKDVICWTSIVVAYS 223

Query: 200 KKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMP------------- 246
           +  ++  A ++F + P +D+ +WT +V G+++      A E+F RM              
Sbjct: 224 RSRDMGSAEEVFGQCPVKDMVAWTAMVTGYAQNAMPMKALEVFDRMTALGIGIDEVSLTG 283

Query: 247 --------------------------NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRD 280
                                       N+V  + +++ Y K G +D AC++FD M+ ++
Sbjct: 284 AISACAQLGAVKRAAWVQEIAEMNGFGMNVVVGSGLVDMYAKCGLIDEACKVFDGMQEKN 343

Query: 281 LITWNSMIAGYELNGRFMEALELLETML-IGDVLPNDATLVSALSAVAGLAVLNKGRWMH 339
           + T++SM+ G   +GR  EA+ L + M+   DV PN  T +  L+A +   ++  GR+  
Sbjct: 344 VYTYSSMVVGLASHGRAREAIALFKDMVRRADVAPNHVTFIGVLTACSHAGMVTDGRYYF 403

Query: 340 SYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMAT 399
           +                  QM  K G + SA             H+T M+  LG  G+  
Sbjct: 404 A------------------QMKDKYGILPSA------------DHYTCMVDLLGRAGLVD 433

Query: 400 QALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGC 458
           +ALDL   M    ++P    +  +L AC   G     +     +   + +EP  I +Y  
Sbjct: 434 EALDLVRSMT---VEPHGGVWGALLGACRIHGKTEVAKVAAEHL---FKLEPEGIGNYVL 487

Query: 459 LVDILCRTGYLEEAKSTIESMPMR 482
           L + L   G  +E     + M  R
Sbjct: 488 LSNTLAAAGKWDEVSKVRKVMRSR 511


>gi|15233234|ref|NP_188214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546758|sp|Q9LSB8.2|PP235_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15930
 gi|332642227|gb|AEE75748.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 687

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 217/622 (34%), Positives = 347/622 (55%), Gaps = 43/622 (6%)

Query: 26  NILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHP 85
           +IL    T  + +QLH+ S+   +  +     +L   +      ++ YA  +F +I + P
Sbjct: 39  SILGVCKTTDQFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFVKIPE-P 97

Query: 86  SLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAAR-LGAIKEGKQI 144
            +V++N +IK +       E + L+ ++L   + PD+ T P ++ G  R  GA+  GK++
Sbjct: 98  DVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKKL 157

Query: 145 HGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEV 204
           H  V K G G + +V ++LV MY+  G +D+ R VFD    +D+ SWN +I GY +  E 
Sbjct: 158 HCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEY 217

Query: 205 EVAMKLFDEMPDRDLFSWT----------------------------------------C 224
           E +++L  EM +R+L S T                                         
Sbjct: 218 EESIELLVEM-ERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENA 276

Query: 225 LVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITW 284
           LV+ ++ CG+++IA  IF  M  R+++SW +++ GY++ G++  A   FD M +RD I+W
Sbjct: 277 LVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISW 336

Query: 285 NSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVK 344
             MI GY   G F E+LE+   M    ++P++ T+VS L+A A L  L  G W+ +YI K
Sbjct: 337 TIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDK 396

Query: 345 NGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDL 404
           N    D V+G  LI MY KCG  E A  VF  + ++    WTAM+VGL  +G   +A+ +
Sbjct: 397 NKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKV 456

Query: 405 FNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILC 464
           F +M  M ++P  IT++GVL+AC+H+G+V+  R++F  M +D+ IEP++ HYGC+VD+L 
Sbjct: 457 FFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLG 516

Query: 465 RTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVV 524
           R G ++EA   +  MPM PN ++W +LL  +R H ++ + E AA  ++++ PD    Y +
Sbjct: 517 RAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPDNGAVYAL 576

Query: 525 LSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSK 584
           L NIYA   +W  + EVR  +     +K PG S IE  G  HEFV GDKSH Q++EI+ K
Sbjct: 577 LCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAGDKSHLQSEEIYMK 636

Query: 585 LSEMRNKLKAAGHVPDTTQVLL 606
           L E+  +   A ++PDT+++L 
Sbjct: 637 LEELAQESTFAAYLPDTSELLF 658


>gi|357140731|ref|XP_003571917.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 695

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 236/676 (34%), Positives = 355/676 (52%), Gaps = 76/676 (11%)

Query: 55  ISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL 114
           +++ L+++Y   H  ++  A  +FD  +  P+LV +  L+     N    +AL  F  + 
Sbjct: 55  LANHLITMY--SHCADVPSAVRLFD-AMPRPNLVSWTTLVSGLTQNSMHRDALAAFSSMC 111

Query: 115 DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEID 174
              L+P  F L    + AA L A   G Q+H +  +LGF  + FV S+L  MY+K G + 
Sbjct: 112 RAGLVPTQFALSSAARAAAALAARHAGAQLHCVGVRLGFDAELFVASNLADMYSKSGLL- 170

Query: 175 LGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGK 234
                                        VE A ++FD+MP +D  +WT ++DG++K G 
Sbjct: 171 -----------------------------VE-ACRVFDQMPQKDAVAWTAMIDGYAKNGN 200

Query: 235 VEIAREIFYRMPNRNLVS-------------------W---------------------N 254
           +E A   F  M    LV                    W                     N
Sbjct: 201 LEAAVIAFRDMRREGLVGADQHVLCSVLSASGGLKDGWLARAIHSCVMKSGFEQEVAVRN 260

Query: 255 AMINGYMKAGDVDSACELFD-DMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL 313
           A+ + Y KA D+D+A  +   D    ++++  S+I GY       +AL +   +    V 
Sbjct: 261 ALTDMYAKAADMDNAARVVKIDQGSLNVVSATSLIDGYIETDCIEKALLMFIELRRQGVE 320

Query: 314 PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTV 373
           PN+ T  S +   A  A+L +G  +H+ ++K   + D  + + L+ MY KCG I  ++ +
Sbjct: 321 PNEFTFSSMIKGCAMQALLEQGAQLHAEVIKTSLISDSFVSSTLLDMYGKCGLISLSIQL 380

Query: 374 FRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLV 433
           F+ I       W A I  L  HG   +A+  F++M   G++P  ITF+ +L ACSHAGLV
Sbjct: 381 FKEIEYHTDIAWNAAINVLAQHGHGREAIRAFDRMTSSGIRPNHITFVSLLTACSHAGLV 440

Query: 434 NDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLS 493
           ++G +YF  M + +GIEP  EHY C++D+  R G L+EA+  I  MP++PN   W SLL 
Sbjct: 441 DEGLKYFYSMKDHHGIEPKGEHYSCIIDMYGRAGRLDEAEKFIGEMPVKPNAYGWCSLLG 500

Query: 494 GARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKD 553
             R  GNK++GE AA+N++K+ PD  G +V LS IYA+ GQW+ V  VR++M+    +K 
Sbjct: 501 ACRMRGNKELGEIAADNMMKLEPDNTGVHVSLSGIYASLGQWEDVKAVRKLMRDNRIKKL 560

Query: 554 PGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKE 613
           PG S ++     H F   D SHPQ ++I+ KL E+  ++K  G+VPD T+ L C  +   
Sbjct: 561 PGFSWVDSNKKTHVFGSEDWSHPQQEKIYEKLEELYERIKEEGYVPD-TRFLPCNLEDTA 619

Query: 614 KEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNS 673
           K+  L  HSER+A+AF LI++ +  PI + KNLR+C DCHS  K +S + NR+IIVRDNS
Sbjct: 620 KQRILRYHSERIAVAFALISMPATKPIIVKKNLRICADCHSALKFISKVENRDIIVRDNS 679

Query: 674 RFHHFKNGSCSCKDFW 689
           RFHHF  G CSC D+W
Sbjct: 680 RFHHFVKGGCSCGDYW 695



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 75/182 (41%), Gaps = 5/182 (2%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           ++  QLHA  +KT+LI  S +SS LL +Y    + +L     +F  I  H  +  +N  I
Sbjct: 340 EQGAQLHAEVIKTSLISDSFVSSTLLDMYGKCGLISLSI--QLFKEIEYHTDIA-WNAAI 396

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEG-KQIHGLVFKLGF 153
                +    EA+  F  +    + P++ T   ++   +  G + EG K  + +    G 
Sbjct: 397 NVLAQHGHGREAIRAFDRMTSSGIRPNHITFVSLLTACSHAGLVDEGLKYFYSMKDHHGI 456

Query: 154 GFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK-DLVSWNCLIDGYVKKGEVEVAMKLFD 212
                  S ++ MY + G +D   +    M  K +   W  L+     +G  E+     D
Sbjct: 457 EPKGEHYSCIIDMYGRAGRLDEAEKFIGEMPVKPNAYGWCSLLGACRMRGNKELGEIAAD 516

Query: 213 EM 214
            M
Sbjct: 517 NM 518


>gi|195609728|gb|ACG26694.1| pentatricopeptide repeat protein PPR986-12 [Zea mays]
          Length = 551

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 196/453 (43%), Positives = 291/453 (64%), Gaps = 15/453 (3%)

Query: 251 VSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIG 310
           V  N++++ Y   G   +A  +F  +  R L++WN+ +     NG  + AL+L   M   
Sbjct: 100 VVANSLVHFYASCGRPGAALAVFRRVPDRSLVSWNTAVDALAGNGDHLAALDLFREMQRD 159

Query: 311 --DVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVK--------NGFVVDGVLGTLLIQM 360
             D+ P+  T+ S L A A    L+ G + H+ +++        +    D ++   L+ +
Sbjct: 160 RPDLAPDAYTVQSVLGACAATGALSLGLYAHALLLRELGGAGHASPVSRDVLINNSLVDL 219

Query: 361 YSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRM-GMKPTAIT 419
           Y KCG++E A  VF  +S++ +  W AM++ L  HG    +LDLF++M R+ G+ P AIT
Sbjct: 220 YGKCGAVELARQVFDRMSERDLASWNAMVLALANHGRVQDSLDLFDRMTRVEGLVPNAIT 279

Query: 420 FIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM 479
           F+ VL+AC+H GLV++GRRYF  M++D+GI P IEHYGC+VDIL R G++EEA   +  M
Sbjct: 280 FVAVLSACNHGGLVDEGRRYFAAMVSDHGIRPRIEHYGCMVDILARAGFIEEALDVVAGM 339

Query: 480 PMRPNFVIWMSLLSGA--RNHGNKDIGEYAANNLIKVAPDTI-GCYVVLSNIYAAAGQWD 536
             RP+ +IW SLL     RN G  ++ E  A   + V  D + G YV+LS +YA+A +W+
Sbjct: 340 NCRPDSIIWRSLLDACCKRNAG-LELSEAMAKLALDVPDDAVSGVYVLLSRVYASAQRWN 398

Query: 537 KVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAG 596
            V  +R++M + GF+K+PG SSIE  G +H+FV GD SHPQ++EI+ KL E++ +L +AG
Sbjct: 399 DVGMIRQLMSQEGFKKEPGFSSIEMDGSVHQFVAGDTSHPQSEEIYVKLDEIQQRLTSAG 458

Query: 597 HVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVT 656
           + PD ++  +  +  + K A L  HSERLAI+FGL+N    +PIRI+KNLRVC DCH+++
Sbjct: 459 YKPDLSEAPMVADIDRTKGATLRLHSERLAISFGLLNATPGAPIRILKNLRVCKDCHTIS 518

Query: 657 KLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           KL+S +YN EIIVRD  RFHHFK+GSCSCKD+W
Sbjct: 519 KLISKLYNVEIIVRDRIRFHHFKDGSCSCKDYW 551



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 133/287 (46%), Gaps = 30/287 (10%)

Query: 74  ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL-DRF-LLPDNFTLPCVIKG 131
           A ++F R+    SLV +N  +     N     AL LF ++  DR  L PD +T+  V+  
Sbjct: 118 ALAVFRRVPDR-SLVSWNTAVDALAGNGDHLAALDLFREMQRDRPDLAPDAYTVQSVLGA 176

Query: 132 AARLGAIKEGKQIHGLVFK-LG-------FGFDKFVLSSLVSMYAKFGEIDLGRRVFDAM 183
            A  GA+  G   H L+ + LG          D  + +SLV +Y K G ++L R+VFD M
Sbjct: 177 CAATGALSLGLYAHALLLRELGGAGHASPVSRDVLINNSLVDLYGKCGAVELARQVFDRM 236

Query: 184 DDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD-----RDLFSWTCLVDGFSKCGKVEIA 238
            ++DL SWN ++      G V+ ++ LFD M        +  ++  ++   +  G V+  
Sbjct: 237 SERDLASWNAMVLALANHGRVQDSLDLFDRMTRVEGLVPNAITFVAVLSACNHGGLVDEG 296

Query: 239 REIFYRMPNRNLVS-----WNAMINGYMKAGDVDSACELFDDMEIR-DLITWNSMIAGYE 292
           R  F  M + + +      +  M++   +AG ++ A ++   M  R D I W S++   +
Sbjct: 297 RRYFAAMVSDHGIRPRIEHYGCMVDILARAGFIEEALDVVAGMNCRPDSIIWRSLL---D 353

Query: 293 LNGRFMEALELLETM--LIGDVLPNDATLVSALSAVAGLAVLNKGRW 337
              +    LEL E M  L  DV P+DA  VS +  +      +  RW
Sbjct: 354 ACCKRNAGLELSEAMAKLALDV-PDDA--VSGVYVLLSRVYASAQRW 397


>gi|242045040|ref|XP_002460391.1| hypothetical protein SORBIDRAFT_02g027420 [Sorghum bicolor]
 gi|241923768|gb|EER96912.1| hypothetical protein SORBIDRAFT_02g027420 [Sorghum bicolor]
          Length = 573

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 199/444 (44%), Positives = 284/444 (63%), Gaps = 3/444 (0%)

Query: 225 LVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMK-AGDVDSACELFDDMEIRDLIT 283
           LV  ++ CG +  AR +F    + ++V+WN ++ GY +  GD D   + F  M  RD ++
Sbjct: 120 LVHAYAVCGMLPHARRVFDGGTDNDMVAWNCLLRGYAQEGGDADLLRDFFARMPSRDSVS 179

Query: 284 WNSMIAGYELNGRFMEALELLETMLIG-DVLPNDATLVSALSAVAGLAVLNKGRWMHSYI 342
           WN++++   +NG + EA+ +   ML   +  P+  TLVS +SA+A L  L +G W H+Y+
Sbjct: 180 WNTVLSLCVVNGEYDEAIAVFREMLASQECQPDRVTLVSVVSAIAYLGALAQGLWAHAYV 239

Query: 343 VKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAI-SKKKVGHWTAMIVGLGMHGMATQA 401
           ++ G  V+  L + LI MYSKCG +E A+ VF  +  K+ +  W AM+ G   +G + +A
Sbjct: 240 IRKGVEVEEKLSSALINMYSKCGFLEGAVYVFDNVRGKRSLDTWNAMLAGFTANGCSGRA 299

Query: 402 LDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVD 461
           L LF +M   G+ P  ITF  +LNACSH GLV +G R F  M   YGIEP I HYGC+VD
Sbjct: 300 LALFTRMETTGLMPNKITFNCILNACSHGGLVEEGMRCFQRMSRVYGIEPDIAHYGCMVD 359

Query: 462 ILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGC 521
           + CR G  E+A+  I+ MPM P+  +  +LL   R H N ++G+ A + LI+ AP+    
Sbjct: 360 LFCRAGMFEKAEEIIQIMPMEPDASMLKALLGACRTHKNLELGKKAGHRLIEAAPNDHAG 419

Query: 522 YVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEI 581
           YV+LSNIYA  G W +V +VR++M  RG  K PGSSS+E  GV+HEF+ GDKSH +  +I
Sbjct: 420 YVLLSNIYALDGNWGRVHKVRKLMLDRGVLKTPGSSSVELNGVIHEFISGDKSHSRKRDI 479

Query: 582 HSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIR 641
           +  L E+  +LK+AG+ PDT+QVLL I+D+  KE+ L  HSE+LAIAFGLI+    +PIR
Sbjct: 480 YKMLDEICQQLKSAGYTPDTSQVLLDIDDEDVKESSLAVHSEKLAIAFGLISTAPGTPIR 539

Query: 642 IVKNLRVCNDCHSVTKLLSGIYNR 665
           +V NLR+C DCH+  KLLS IY R
Sbjct: 540 VVNNLRICGDCHNAIKLLSKIYGR 563



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 107/392 (27%), Positives = 152/392 (38%), Gaps = 80/392 (20%)

Query: 104 HEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGF-GFDKFVLSS 162
           H AL LF  LL     PD       +   AR        Q+H    K GF    + V   
Sbjct: 60  HLALRLFDHLLRSGADPDPAAYELALASCARGKDRATAAQLHAHAAKRGFLASHRRVRCR 119

Query: 163 LVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKK-GEVEVAMKLFDEMPDRDLFS 221
           LV  YA  G +   RRVFD   D D+V+WNCL+ GY ++ G+ ++    F  MP RD  S
Sbjct: 120 LVHAYAVCGMLPHARRVFDGGTDNDMVAWNCLLRGYAQEGGDADLLRDFFARMPSRDSVS 179

Query: 222 WTCLVDGFSKCGKVEIAREIFYRM-------PNR-NLVS---------------W----- 253
           W  ++      G+ + A  +F  M       P+R  LVS               W     
Sbjct: 180 WNTVLSLCVVNGEYDEAIAVFREMLASQECQPDRVTLVSVVSAIAYLGALAQGLWAHAYV 239

Query: 254 ------------NAMINGYMKAGDVDSACELFDDME-IRDLITWNSMIAGYELNGRFMEA 300
                       +A+IN Y K G ++ A  +FD++   R L TWN+M+AG+  NG    A
Sbjct: 240 IRKGVEVEEKLSSALINMYSKCGFLEGAVYVFDNVRGKRSLDTWNAMLAGFTANGCSGRA 299

Query: 301 LELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQM 360
           L L   M    ++PN  T    L+A +           H  +V+ G            Q 
Sbjct: 300 LALFTRMETTGLMPNKITFNCILNACS-----------HGGLVEEGMRC--------FQR 340

Query: 361 YSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITF 420
            S+   IE             + H+  M+      GM  +A ++      M M+P A   
Sbjct: 341 MSRVYGIEP-----------DIAHYGCMVDLFCRAGMFEKAEEIIQI---MPMEPDASML 386

Query: 421 IGVLNAC-SHAGL---VNDGRRYFNMMINDYG 448
             +L AC +H  L      G R      ND+ 
Sbjct: 387 KALLGACRTHKNLELGKKAGHRLIEAAPNDHA 418



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 129/292 (44%), Gaps = 17/292 (5%)

Query: 75  RSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL-DRFLLPDNFTLPCVIKGAA 133
           R  F R+    S V +N ++   V N    EA+ +F ++L  +   PD  TL  V+   A
Sbjct: 166 RDFFARMPSRDS-VSWNTVLSLCVVNGEYDEAIAVFREMLASQECQPDRVTLVSVVSAIA 224

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK-DLVSWN 192
            LGA+ +G   H  V + G   ++ + S+L++MY+K G ++    VFD +  K  L +WN
Sbjct: 225 YLGALAQGLWAHAYVIRKGVEVEEKLSSALINMYSKCGFLEGAVYVFDNVRGKRSLDTWN 284

Query: 193 CLIDGYVKKGEVEVAMKLFDEMPDRDLF----SWTCLVDGFSKCGKVEIAREIFYRMP-- 246
            ++ G+   G    A+ LF  M    L     ++ C+++  S  G VE     F RM   
Sbjct: 285 AMLAGFTANGCSGRALALFTRMETTGLMPNKITFNCILNACSHGGLVEEGMRCFQRMSRV 344

Query: 247 ---NRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALEL 303
                ++  +  M++ + +AG  + A E+   M +    +    + G     + +E  + 
Sbjct: 345 YGIEPDIAHYGCMVDLFCRAGMFEKAEEIIQIMPMEPDASMLKALLGACRTHKNLELGKK 404

Query: 304 LETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGT 355
               LI +  PND      LS +  L     G W   + V+   +  GVL T
Sbjct: 405 AGHRLI-EAAPNDHAGYVLLSNIYAL----DGNWGRVHKVRKLMLDRGVLKT 451


>gi|414869441|tpg|DAA47998.1| TPA: hypothetical protein ZEAMMB73_181337 [Zea mays]
          Length = 639

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 225/590 (38%), Positives = 332/590 (56%), Gaps = 34/590 (5%)

Query: 121 DNFTLPCVIKGAARLGAIKEGKQIH------GLVFKLGFGFDKFVLSSLVSMYAKFGEID 174
           D  +L  ++K   R G    G+ IH      G +   G G   FV +SL SMYAKFG +D
Sbjct: 63  DPVSLTRLVKLCVRHGTADHGRLIHRHVEAHGPLPHDGAG-GLFVSNSLASMYAKFGLLD 121

Query: 175 LGRRVFDAMDDKDLVSWNCLI------DGYVKKG-EVEVAMKLFDEMPDRDLFS---WTC 224
              R+FD M  +++V+W  ++      DG  ++     VAM+     P+   FS     C
Sbjct: 122 DALRMFDGMPVRNVVTWTTVVAALASADGRKQEALRFLVAMRRDGVAPNAYTFSSVLGAC 181

Query: 225 LVDGF-----SKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIR 279
              G      +   K  +  ++F R         +++I+ Y+K GD+D    +FD+M  R
Sbjct: 182 TTPGMLTAVHASTVKAGLDSDVFVR---------SSLIDAYVKLGDLDGGRRVFDEMVTR 232

Query: 280 DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMH 339
           DL+ WNS+IAG+  +G  + A+EL   M       N  TL S L A  G+ +L  GR +H
Sbjct: 233 DLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSSNQGTLTSVLRACTGMVMLEAGRQVH 292

Query: 340 SYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMAT 399
           ++++K  +  D +L   L+ MY KCGS+E A  +F  + ++ V  W+ M+ GL  +G + 
Sbjct: 293 AHVLK--YDRDLILHNALLDMYCKCGSLEDADALFHRMPQRDVISWSTMVSGLAQNGKSV 350

Query: 400 QALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCL 459
           +AL +F+ M   G+ P  +T +GVL ACSHAGLV DG  YF  M   +GI+P  EH+ C+
Sbjct: 351 EALRVFDLMKSQGVAPNHVTMVGVLFACSHAGLVEDGWHYFRSMKRLFGIQPEREHHNCM 410

Query: 460 VDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTI 519
           VD+L R G L+EA   I  M + P+ VIW +LL   R H N  +  YAA  ++K+ PD  
Sbjct: 411 VDLLGRAGKLDEAVEFIHGMSLEPDSVIWRTLLGACRMHKNASLAAYAAREILKLEPDDQ 470

Query: 520 GCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTD 579
           G  V+LSN YA   QW    +  + M+ RG RK+PG S IE    +H F+ GD SHP +D
Sbjct: 471 GARVLLSNTYADLRQWTDAEKPWKAMRDRGMRKEPGRSWIELEKRVHVFIAGDLSHPCSD 530

Query: 580 EIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSP 639
            I  +L+ +  ++K+ G+VP T  VL  +  + +KE  L+ HSE++AI FG ++     P
Sbjct: 531 TIIQELNRLIGRIKSLGYVPQTEFVLQDLPTE-QKEDLLKYHSEKMAIVFGTMHAVDGKP 589

Query: 640 IRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           IRI+KNLR+C DCH+  KL+S    R I++RD  RFHHF++G+CSC D+W
Sbjct: 590 IRIMKNLRICGDCHAFAKLVSKSEGRVIVIRDPVRFHHFQDGACSCGDYW 639


>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
 gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/515 (40%), Positives = 308/515 (59%), Gaps = 9/515 (1%)

Query: 183 MDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFSKCGKVEIA 238
           M+  D VSWN LI G V++G  E A+  F +M  RD+    ++   +++ F+    ++ A
Sbjct: 1   MEFDDEVSWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNA 60

Query: 239 REIFYRMPNRNLVSW----NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELN 294
             +   +      ++    NA+I+ Y K G +D A  +F  M  +D+++W S++ GY  N
Sbjct: 61  ISVHCLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHN 120

Query: 295 GRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLG 354
           G + EA++L   M I  V P+   + S LSA A L V++ G+ +H+ +VK+G      + 
Sbjct: 121 GSYEEAIKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKSGLESSLSVD 180

Query: 355 TLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMK 414
             L+ MY+KCGSI  A   F  +  + V  WTA+IVG   +G    +L  +++M   G K
Sbjct: 181 NSLVTMYAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTK 240

Query: 415 PTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKS 474
           P  ITFIG+L ACSH GL+  GR YF  M   YGI+P  EHY C++D+L R+G L EAK 
Sbjct: 241 PDYITFIGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEHYACMIDLLGRSGKLAEAKG 300

Query: 475 TIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQ 534
            +  M + P+ V+W +LL+  R H   ++GE AA NL ++ P     YV+LSN+Y+AAG+
Sbjct: 301 LLNQMVVAPDAVVWKALLAACRVHKELELGEMAAKNLFELEPMNSMPYVMLSNMYSAAGK 360

Query: 535 WDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKA 594
           W+  + +R +M+ RG  K+PG S IE    +  F+  D++HP  +EI+SK+ E+   +K 
Sbjct: 361 WEDAARIRRLMRSRGICKEPGYSWIETNSKVSTFMSEDRNHPLRNEIYSKIDEIIMLIKE 420

Query: 595 AGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHS 654
           AG+VPD +  L   +D+  KE  L  HSE+LA+AFGL+ V   +PIRI KNLRVC DCH+
Sbjct: 421 AGYVPDMSFALHDTDDEV-KELGLAYHSEKLAVAFGLLTVPQGAPIRIFKNLRVCGDCHT 479

Query: 655 VTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
             K  S +Y R II+RD++ FHHF  G CSC D+W
Sbjct: 480 AMKYTSKVYARHIILRDSNCFHHFTEGRCSCGDYW 514



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/353 (28%), Positives = 155/353 (43%), Gaps = 51/353 (14%)

Query: 88  VLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGL 147
           V +N LI   V      +AL+ F  +  R +  D +TLP V+   A +  ++    +H L
Sbjct: 7   VSWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNAISVHCL 66

Query: 148 VFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVA 207
           + K GF   K V ++L+ MYAK G++D    VF  M DKD+VSW  L+ GY   G  E A
Sbjct: 67  IIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSYEEA 126

Query: 208 MKLFDEM------PDRDLFSWTCLVDGFSKCGKVEI---AREIFYRMPNRNLVSW----N 254
           +KLF +M      PD+       +    S C ++ +    ++I   +    L S     N
Sbjct: 127 IKLFCKMRISGVYPDQ-----IAVASVLSACAELTVMDFGQQIHATLVKSGLESSLSVDN 181

Query: 255 AMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLP 314
           +++  Y K G +  A   FD+M  RD+I+W ++I GY  NGR   +L+  + M+     P
Sbjct: 182 SLVTMYAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTKP 241

Query: 315 NDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVF 374
           +  T +  L A +   +L  GR            +D V G                    
Sbjct: 242 DYITFIGLLFACSHNGLLGSGRAYFE-------AMDKVYGI------------------- 275

Query: 375 RAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNAC 427
               K    H+  MI  LG  G   +A  L N+M    + P A+ +  +L AC
Sbjct: 276 ----KPGPEHYACMIDLLGRSGKLAEAKGLLNQMV---VAPDAVVWKALLAAC 321



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 134/299 (44%), Gaps = 23/299 (7%)

Query: 19  LPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIF 78
           LPS L  N        +    +H L +KT    +  +++ L+ +Y       L  A  +F
Sbjct: 44  LPSVL--NSFASMKVMQNAISVHCLIIKTGFEAYKLVNNALIDMYAKQ--GKLDCAIMVF 99

Query: 79  DRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAI 138
            +++    +V +  L+  Y  N    EA+ LFC +    + PD   +  V+   A L  +
Sbjct: 100 SKMVDK-DVVSWTSLVTGYSHNGSYEEAIKLFCKMRISGVYPDQIAVASVLSACAELTVM 158

Query: 139 KEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGY 198
             G+QIH  + K G      V +SLV+MYAK G I    R FD M  +D++SW  LI GY
Sbjct: 159 DFGQQIHATLVKSGLESSLSVDNSLVTMYAKCGSIVDANRAFDNMPTRDVISWTALIVGY 218

Query: 199 VKKGEVEVAMKLFDEM------PDRDLFS---WTCLVDGFSKCGKV--EIAREIFYRMPN 247
            + G  + +++ +D+M      PD   F    + C  +G    G+   E   +++   P 
Sbjct: 219 AQNGRGKHSLQFYDQMIATGTKPDYITFIGLLFACSHNGLLGSGRAYFEAMDKVYGIKPG 278

Query: 248 RNLVSWNAMINGYMKAGDVDSACELFDDMEIR-DLITWNSMIAGYELNGRFMEALELLE 305
                +  MI+   ++G +  A  L + M +  D + W +++A      R  + LEL E
Sbjct: 279 PE--HYACMIDLLGRSGKLAEAKGLLNQMVVAPDAVVWKALLAA----CRVHKELELGE 331


>gi|297851626|ref|XP_002893694.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339536|gb|EFH69953.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 607

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 200/520 (38%), Positives = 322/520 (61%), Gaps = 10/520 (1%)

Query: 179 VFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCLVDGFSKCGK 234
           +F  +DD     +  +I GYV +   EVA+  ++EM +R    D F++ CL+   ++   
Sbjct: 89  IFRGIDDPCTFDFKTMIRGYVNEMSFEVALCFYNEMMERGIEPDNFTYPCLLKACTRLKA 148

Query: 235 VEIAREI----FYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAG 290
           +   ++I    F      ++   N++IN Y + G+++ +  +F+ +E +   +W+SM + 
Sbjct: 149 IREGKQIHGHVFKLGLEADVFVQNSLINMYGRCGEMELSSTVFEKLEFKSAASWSSMFSA 208

Query: 291 YELNGRFMEALELLETMLI-GDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVV 349
               G + E L L   M    ++   ++ +VSALSA A    LN G  +H ++++N   +
Sbjct: 209 CVGMGMWSECLMLFREMCRETNLKAEESGMVSALSACANTGALNLGMSIHGFLLRNISEL 268

Query: 350 DGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMC 409
           + ++ T L+ MY KCG I++AL +F+ + K+    ++AMI G  +HG    AL +F++M 
Sbjct: 269 NIIVKTSLVDMYVKCGCIDNALHIFQKMEKRNNLTYSAMISGFALHGEGESALRMFSEMI 328

Query: 410 RMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYL 469
           + G++P  + ++ +LNACSH+GLV +GRR F  M+ +  +EPT EHYGCLVD+L R G L
Sbjct: 329 KEGLEPDHVVYVSLLNACSHSGLVKEGRRVFGEMLKEGKVEPTAEHYGCLVDLLGRAGLL 388

Query: 470 EEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIY 529
           EEA  TI+S+P+  N V+W S LS  R H N ++G+ AA  L+K+     G Y+++SN+Y
Sbjct: 389 EEALETIQSIPIEQNDVVWRSFLSQCRVHQNIELGQIAAQELLKLCSHNPGDYLLISNMY 448

Query: 530 AAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMR 589
           + A  WD V+  R  +  +G ++ PG S+++ +G  H FV  D+SHPQ  EI+  L +M 
Sbjct: 449 SQAHMWDDVARSRTEIAIKGLKQTPGFSTVKVKGKTHRFVSQDRSHPQCKEIYKMLHQME 508

Query: 590 NKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVC 649
            +LK  G+ PD TQ+LL + D++EK+  L+ HS+++AIAF L+     S I+I +NLR+C
Sbjct: 509 WQLKFEGYSPDLTQILLNV-DEEEKKERLKGHSQKVAIAFALLYTPPGSIIKIARNLRMC 567

Query: 650 NDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           +DCH+ TK +S IY REI+VRD +RFH FK G+CSCKD+W
Sbjct: 568 SDCHTYTKKISMIYEREIVVRDRNRFHLFKGGTCSCKDYW 607



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 102/320 (31%), Positives = 172/320 (53%), Gaps = 13/320 (4%)

Query: 69  NNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHE-ALTLFCDLLDRFLLPDNFTLPC 127
           N+++YA SIF R +  P    +  +I+ YV N+ S E AL  + ++++R + PDNFT PC
Sbjct: 81  NSMNYAASIF-RGIDDPCTFDFKTMIRGYV-NEMSFEVALCFYNEMMERGIEPDNFTYPC 138

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD 187
           ++K   RL AI+EGKQIHG VFKLG   D FV +SL++MY + GE++L   VF+ ++ K 
Sbjct: 139 LLKACTRLKAIREGKQIHGHVFKLGLEADVFVQNSLINMYGRCGEMELSSTVFEKLEFKS 198

Query: 188 LVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSW--TCLVDGFSKC---GKVEIAREI- 241
             SW+ +    V  G     + LF EM          + +V   S C   G + +   I 
Sbjct: 199 AASWSSMFSACVGMGMWSECLMLFREMCRETNLKAEESGMVSALSACANTGALNLGMSIH 258

Query: 242 ---FYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFM 298
                 +   N++   ++++ Y+K G +D+A  +F  ME R+ +T+++MI+G+ L+G   
Sbjct: 259 GFLLRNISELNIIVKTSLVDMYVKCGCIDNALHIFQKMEKRNNLTYSAMISGFALHGEGE 318

Query: 299 EALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLG-TLL 357
            AL +   M+   + P+    VS L+A +   ++ +GR +   ++K G V         L
Sbjct: 319 SALRMFSEMIKEGLEPDHVVYVSLLNACSHSGLVKEGRRVFGEMLKEGKVEPTAEHYGCL 378

Query: 358 IQMYSKCGSIESALTVFRAI 377
           + +  + G +E AL   ++I
Sbjct: 379 VDLLGRAGLLEEALETIQSI 398


>gi|125537150|gb|EAY83638.1| hypothetical protein OsI_38867 [Oryza sativa Indica Group]
          Length = 914

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 226/574 (39%), Positives = 323/574 (56%), Gaps = 34/574 (5%)

Query: 38  QQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQ-HPSLVLYNLLIKC 96
           ++LHA  +K  L  +   ++RL+S Y    +  L  +R +FD I   H    L N +++ 
Sbjct: 369 RELHAQVLKQGLHLNPRAAARLVSAYA--LLRLLPSSRRVFDAIRDPHADAFLANTMLRA 426

Query: 97  YVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFD 156
           Y       +AL  F  +  R    D+FT   +IK  +  G +   + +H  V KLG   D
Sbjct: 427 YALGGAPRDALAAFSAMPRR----DSFTYSFLIKALSAAG-VAPVRAVHSHVVKLGSVED 481

Query: 157 KFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD 216
            FV ++L+  Y+K G     R+VFD M ++D+VSWN  +   V++GE+  A KLFDEMP+
Sbjct: 482 TFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGARKLFDEMPE 541

Query: 217 RDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDM 276
           +D  SW  ++DG++K G+VE A E+F RMP RN+VSW+ M++GY K GD++ A  +FD M
Sbjct: 542 KDTVSWNTILDGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKM 601

Query: 277 EIRDLITWNSMI--AGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNK 334
             ++L+TW  M+  A  EL                 DV    A +VS L+A A    L+ 
Sbjct: 602 PGKNLVTWTIMMKEASVEL-----------------DV----AAVVSILAACAESGSLSL 640

Query: 335 GRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVF--RAISKKKVGHWTAMIVGL 392
           G+ +H Y+ K        +   LI M+ KCG +  A  VF    + K  V  W ++I G 
Sbjct: 641 GKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVS-WNSIIGGF 699

Query: 393 GMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT 452
            MHG   +AL+LF +M + G  P A+T I VL+AC+H G V++GRRYF+ M  DYGI P 
Sbjct: 700 AMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRYFSNMERDYGIMPQ 759

Query: 453 IEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLI 512
           IEHYGC++D+L R G ++EA   I+SMP  PN VIW SLLS  R H N +  E A N L 
Sbjct: 760 IEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELS 819

Query: 513 KVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGD 572
           K+ P   G Y VLSNIYA AGQW  +++ R  MK  G +K  GSS +E     HEF VGD
Sbjct: 820 KLQPSNAGNYAVLSNIYAEAGQWSDMAKARMQMKGTGSQKTAGSSWVELNETFHEFTVGD 879

Query: 573 KSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLL 606
           + H  +D+I   +  + + +K  G VP   ++L+
Sbjct: 880 RKHQDSDQISEMVDRLSSHVKHVGCVPAGHELLV 913


>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
 gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
          Length = 1084

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 223/654 (34%), Positives = 358/654 (54%), Gaps = 13/654 (1%)

Query: 41   HALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFN 100
            H   VK        + + L+S Y     N +  A  +FDR + H   + +N +I     N
Sbjct: 433  HGYLVKLGFGTQCAVCNALISFYAKS--NMIDNAVLVFDR-MPHQDTISWNSVISGCTSN 489

Query: 101  QRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVL 160
              + EA+ LF  +  +    D+ TL  V+   AR      G+ +HG   K G   +  + 
Sbjct: 490  GLNSEAIELFVRMWMQGHELDSTTLLSVLPACARSHYWFVGRVVHGYSVKTGLIGETSLA 549

Query: 161  SSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP----D 216
            ++L+ MY+   +     ++F  M  K++VSW  +I  Y + G  +    L  EM      
Sbjct: 550  NALLDMYSNCSDWHSTNQIFRNMAQKNVVSWTAMITSYTRAGLFDKVAGLLQEMVLDGIK 609

Query: 217  RDLFSWTCLVDGFSKCGKVEIAREIF-YRMPN---RNLVSWNAMINGYMKAGDVDSACEL 272
             D+F+ T ++ GF+    ++  + +  Y + N   + L   NA++  Y+   +++ A  +
Sbjct: 610  PDVFAVTSVLHGFAGDESLKQGKSVHGYAIRNGMEKLLPVANALMEMYVNCRNMEEARLV 669

Query: 273  FDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVL 332
            FD +  +D+I+WN++I GY  N    E+  L   ML+    PN  T+   L AVA ++ L
Sbjct: 670  FDHVTNKDIISWNTLIGGYSRNNFANESFSLFSDMLL-QFKPNTVTMTCILPAVASISSL 728

Query: 333  NKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGL 392
             +GR +H+Y ++ GF+ D      L+ MY KCG++  A  +F  ++KK +  WT MI G 
Sbjct: 729  ERGREIHAYALRRGFLEDSYTSNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGY 788

Query: 393  GMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT 452
            GMHG    A+ LF +M   G++P   +F  +L AC H+GL  +G ++FN M  +Y IEP 
Sbjct: 789  GMHGCGKDAVALFEQMRGSGVEPDTASFSAILYACCHSGLTAEGWKFFNAMRKEYKIEPK 848

Query: 453  IEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLI 512
            ++HY C+VD+L  TG L+EA   IESMP+ P+  IW+SLL G R H +  + E  A+ + 
Sbjct: 849  LKHYTCIVDLLSHTGNLKEAFEFIESMPIEPDSSIWVSLLHGCRIHRDVKLAEKVADRVF 908

Query: 513  KVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGD 572
            K+ P+  G YV+L+NIYA A +W+ V +++  +  RG R++ G S IE RG +H F+  +
Sbjct: 909  KLEPENTGYYVLLANIYAEAERWEAVKKLKNKIGGRGLRENTGCSWIEVRGKVHVFIADN 968

Query: 573  KSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLI 632
            ++HP+ + I   L  +  +++  GH P     L+   D    EA L  HS +LA+ FG++
Sbjct: 969  RNHPEWNRIAEFLDHVARRMREEGHDPKKKYSLMGANDAVHDEA-LCGHSSKLAVTFGVL 1027

Query: 633  NVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCK 686
            ++    PIR+ KN +VC+ CH   K +S + NREII+RD+SRFHHF+ G CSC+
Sbjct: 1028 HLPEGRPIRVTKNSKVCSHCHEAAKFISKMCNREIILRDSSRFHHFEGGRCSCR 1081



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 135/506 (26%), Positives = 234/506 (46%), Gaps = 26/506 (5%)

Query: 40  LHALSVKTNLIY-----HSGI----SSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLY 90
           +H  S+K+ L++      SGI     S+L+ +YV     ++  AR +FD +    ++ ++
Sbjct: 321 VHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVK--CGDMGSARRVFDAMPSKGNVHVW 378

Query: 91  NLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFK 150
           NL++  Y       E+L LF  + +  + PD   L C++K    L   ++G   HG + K
Sbjct: 379 NLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLLKCITCLSCARDGLVAHGYLVK 438

Query: 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
           LGFG    V ++L+S YAK   ID    VFD M  +D +SWN +I G    G    A++L
Sbjct: 439 LGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGLNSEAIEL 498

Query: 211 FDE--MPDRDLFSWTCLVDGFSKCGKVE---IAREIFYRMPNRNLVS----WNAMINGYM 261
           F    M   +L S T L+     C +     + R +        L+      NA+++ Y 
Sbjct: 499 FVRMWMQGHELDS-TTLLSVLPACARSHYWFVGRVVHGYSVKTGLIGETSLANALLDMYS 557

Query: 262 KAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVS 321
              D  S  ++F +M  +++++W +MI  Y   G F +   LL+ M++  + P+   + S
Sbjct: 558 NCSDWHSTNQIFRNMAQKNVVSWTAMITSYTRAGLFDKVAGLLQEMVLDGIKPDVFAVTS 617

Query: 322 ALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKK 381
            L   AG   L +G+ +H Y ++NG      +   L++MY  C ++E A  VF  ++ K 
Sbjct: 618 VLHGFAGDESLKQGKSVHGYAIRNGMEKLLPVANALMEMYVNCRNMEEARLVFDHVTNKD 677

Query: 382 VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFN 441
           +  W  +I G   +  A ++  LF+ M  +  KP  +T   +L A +    +  GR    
Sbjct: 678 IISWNTLIGGYSRNNFANESFSLFSDML-LQFKPNTVTMTCILPAVASISSLERGREIHA 736

Query: 442 MMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG-N 500
             +    +E +      LVD+  + G L  A+   + +  + N + W  +++G   HG  
Sbjct: 737 YALRRGFLEDSYTS-NALVDMYVKCGALLVARVLFDRL-TKKNLISWTIMIAGYGMHGCG 794

Query: 501 KD-IGEYAANNLIKVAPDTIGCYVVL 525
           KD +  +       V PDT     +L
Sbjct: 795 KDAVALFEQMRGSGVEPDTASFSAIL 820



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 155/572 (27%), Positives = 255/572 (44%), Gaps = 71/572 (12%)

Query: 35  KETQQLHAL-SVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLV-LYNL 92
           +  ++ HAL    T  I  S +  RL+  Y+     +L  AR +FD +    + V ++  
Sbjct: 111 EAARRAHALVRAGTGGIIGSVLGKRLVLAYLK--CGDLGGARMVFDEMPPRVADVRVWTS 168

Query: 93  LIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLG 152
           L+  Y       E ++LF  +    + PD   + CV+K  A LG+I EG+ IHGL+ KLG
Sbjct: 169 LMSAYAKAGDFQEGVSLFRQMQCCGVSPDAHAVSCVLKCIASLGSITEGEVIHGLLEKLG 228

Query: 153 FGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFD 212
            G    V ++L+++Y++ G ++   +VFD+M  +D +SWN  I GY   G  + A+ LF 
Sbjct: 229 LGEACAVANALIALYSRCGCMEDAMQVFDSMHARDAISWNSTISGYFSNGWHDRAVDLFS 288

Query: 213 EM--PDRDLFSWT-------CLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMING---- 259
           +M     ++ S T       C   GF   GKV       Y M +  L    ++ +G    
Sbjct: 289 KMWSEGTEISSVTVLSVLPACAELGFELVGKVVHG----YSMKSGLLWDLESVQSGIDEA 344

Query: 260 --------YMKAGDVDSACELFDDMEIR-DLITWNSMIAGYELNGRFMEALELLETMLIG 310
                   Y+K GD+ SA  +FD M  + ++  WN ++ GY     F E+L L E M   
Sbjct: 345 LGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHEL 404

Query: 311 DVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESA 370
            + P++  L   L  +  L+    G   H Y+VK GF     +   LI  Y+K   I++A
Sbjct: 405 GITPDEHALSCLLKCITCLSCARDGLVAHGYLVKLGFGTQCAVCNALISFYAKSNMIDNA 464

Query: 371 LTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHA 430
           + VF  +  +    W ++I G   +G+ ++A++LF +M   G +  + T + VL AC+ +
Sbjct: 465 VLVFDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPACARS 524

Query: 431 GLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMS 490
                GR     +++ Y +               +TG + E       + M  N   W S
Sbjct: 525 HYWFVGR-----VVHGYSV---------------KTGLIGETSLANALLDMYSNCSDWHS 564

Query: 491 LLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGF 550
                RN   K++  + A                +   Y  AG +DKV+ + + M   G 
Sbjct: 565 TNQIFRNMAQKNVVSWTA----------------MITSYTRAGLFDKVAGLLQEMVLDGI 608

Query: 551 RKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIH 582
           + D  + +     VLH F  GD+S  Q   +H
Sbjct: 609 KPDVFAVT----SVLHGF-AGDESLKQGKSVH 635


>gi|147812499|emb|CAN61868.1| hypothetical protein VITISV_002466 [Vitis vinifera]
          Length = 440

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/436 (44%), Positives = 284/436 (65%), Gaps = 1/436 (0%)

Query: 254 NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL 313
           NA+++ Y K G  D A ++F+ M  +D+I+W S++ G   NG + EAL L   M I  + 
Sbjct: 6   NALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIH 65

Query: 314 PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTV 373
           P+   + + LSA A L VL  G+ +H+  +K+G      +   L+ MY+KCG IE A  V
Sbjct: 66  PDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKV 125

Query: 374 FRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLV 433
           F ++  + V  WTA+IVG   +G   ++L+ +N M   G+KP  ITFIG+L ACSHAGLV
Sbjct: 126 FDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHAGLV 185

Query: 434 NDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLS 493
             GR YF  M   YGI+P  EHY C++D+L R+G L EAK  +  M ++P+  +W +LL+
Sbjct: 186 EHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLA 245

Query: 494 GARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKD 553
             R HGN ++GE AANNL ++ P     YV+LSN+Y+AAG+W++ ++ R +MK RG  K+
Sbjct: 246 ACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGVSKE 305

Query: 554 PGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKE 613
           PG S IE    +H F+  D+SHP+T EI+SK+ E+   +K AG+VPD    L  + D++ 
Sbjct: 306 PGCSWIEMSSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKEAGYVPDMNFALHDM-DEEG 364

Query: 614 KEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNS 673
           KE  L  HSE+LA+AFGL+ +   +PIRI KNLR+C DCH+  K +SG+++R +I+RD++
Sbjct: 365 KELGLAYHSEKLAVAFGLLTMPPGAPIRIFKNLRICGDCHTAMKYVSGVFHRHVILRDSN 424

Query: 674 RFHHFKNGSCSCKDFW 689
            FHHF+ G+CSC D+W
Sbjct: 425 CFHHFREGACSCSDYW 440



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 99/337 (29%), Positives = 153/337 (45%), Gaps = 49/337 (14%)

Query: 157 KFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM-- 214
           + V ++LV MYAK G  D    VF+ M DKD++SW  L+ G V  G  E A++LF EM  
Sbjct: 2   ELVNNALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRI 61

Query: 215 ----PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSW----NAMINGYMKAGDV 266
               PD+ + +   ++   ++   +E  +++        L S     N++++ Y K G +
Sbjct: 62  MGIHPDQIVIA--AVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCI 119

Query: 267 DSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326
           + A ++FD MEI+D+ITW ++I GY  NGR  E+L     M+   V P+  T +  L A 
Sbjct: 120 EDANKVFDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFAC 179

Query: 327 AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWT 386
           +   ++  GR   SY                        S+E    +     K    H+ 
Sbjct: 180 SHAGLVEHGR---SYF----------------------QSMEEVYGI-----KPGPEHYA 209

Query: 387 AMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIND 446
            MI  LG  G   +A +L N+   M ++P A  +  +L AC   G V  G R  N   N 
Sbjct: 210 CMIDLLGRSGKLMEAKELLNQ---MAVQPDATVWKALLAACRVHGNVELGERAAN---NL 263

Query: 447 YGIEP-TIEHYGCLVDILCRTGYLEEAKSTIESMPMR 482
           + +EP     Y  L ++    G  EEA  T   M +R
Sbjct: 264 FELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLR 300



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 89/329 (27%), Positives = 150/329 (45%), Gaps = 27/329 (8%)

Query: 73  YARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGA 132
           YA  +F+++     +   +L+  C V N    EAL LFC++    + PD   +  V+   
Sbjct: 20  YAFDVFEKMTDKDVISWTSLVTGC-VHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSAC 78

Query: 133 ARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWN 192
           A L  ++ GKQ+H    K G G    V +SLVSMYAK G I+   +VFD+M+ +D+++W 
Sbjct: 79  AELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWT 138

Query: 193 CLIDGYVKKGEVEVAMKLFDEM----PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR 248
            LI GY + G    ++  +++M       D  ++  L+   S  G VE  R  F  M   
Sbjct: 139 ALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHAGLVEHGRSYFQSMEEV 198

Query: 249 NLVS-----WNAMINGYMKAGDVDSACELFDDMEIR-DLITWNSMIAGYELNGRFMEALE 302
             +      +  MI+   ++G +  A EL + M ++ D   W +++A   ++G     +E
Sbjct: 199 YGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLAACRVHGN----VE 254

Query: 303 LLETML--IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQM 360
           L E     + ++ P +A     LS +   A    G+W  +   +    + GV        
Sbjct: 255 LGERAANNLFELEPKNAVPYVLLSNLYSAA----GKWEEAAKTRRLMKLRGV------SK 304

Query: 361 YSKCGSIESALTVFRAISKKKVGHWTAMI 389
              C  IE +  V R +S+ +    TA I
Sbjct: 305 EPGCSWIEMSSKVHRFMSEDRSHPRTAEI 333


>gi|15242278|ref|NP_197038.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180838|sp|Q9LXE8.1|PP386_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g15340, mitochondrial; Flags: Precursor
 gi|7671503|emb|CAB89344.1| putative protein [Arabidopsis thaliana]
 gi|332004768|gb|AED92151.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 225/615 (36%), Positives = 347/615 (56%), Gaps = 56/615 (9%)

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGF--GFDKFVLSSLVSMYAKFGEIDLGRRVFD--AM 183
           +++  A    ++ GK++H ++   G       ++ ++L   YA  GE+   +++FD   +
Sbjct: 12  LLRHCAHRSFLRPGKELHAVLTTSGLKKAPRSYLSNALFQFYASSGEMVTAQKLFDEIPL 71

Query: 184 DDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR----DLFSWTCL-------------- 225
            +KD V W  L+  + + G +  +MKLF EM  +    D  S  CL              
Sbjct: 72  SEKDNVDWTTLLSSFSRYGLLVNSMKLFVEMRRKRVEIDDVSVVCLFGVCAKLEDLGFAQ 131

Query: 226 ---------------------VDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAG 264
                                +D + KCG V   + IF  +  +++VSW  +++  +K  
Sbjct: 132 QGHGVAVKMGVLTSVKVCNALMDMYGKCGLVSEVKRIFEELEEKSVVSWTVVLDTVVKWE 191

Query: 265 DVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLI--GDVLPNDATLVSA 322
            ++   E+F +M  R+ + W  M+AGY   G   E LELL  M+   G  L N  TL S 
Sbjct: 192 GLERGREVFHEMPERNAVAWTVMVAGYLGAGFTREVLELLAEMVFRCGHGL-NFVTLCSM 250

Query: 323 LSAVAGLAVLNKGRWMHSYIVKNGFVV-------DGVLGTLLIQMYSKCGSIESALTVFR 375
           LSA A    L  GRW+H Y +K   ++       D ++GT L+ MY+KCG+I+S++ VFR
Sbjct: 251 LSACAQSGNLVVGRWVHVYALKKEMMMGEEASYDDVMVGTALVDMYAKCGNIDSSMNVFR 310

Query: 376 AISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVND 435
            + K+ V  W A+  GL MHG     +D+F +M R  +KP  +TF  VL+ACSH+G+V++
Sbjct: 311 LMRKRNVVTWNALFSGLAMHGKGRMVIDMFPQMIR-EVKPDDLTFTAVLSACSHSGIVDE 369

Query: 436 GRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGA 495
           G R F+ +   YG+EP ++HY C+VD+L R G +EEA+  +  MP+ PN V+  SLL   
Sbjct: 370 GWRCFHSL-RFYGLEPKVDHYACMVDLLGRAGLIEEAEILMREMPVPPNEVVLGSLLGSC 428

Query: 496 RNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPG 555
             HG  +I E     LI+++P      +++SN+Y A G+ D    +R  ++KRG RK PG
Sbjct: 429 SVHGKVEIAERIKRELIQMSPGNTEYQILMSNMYVAEGRSDIADGLRGSLRKRGIRKIPG 488

Query: 556 SSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIE-DQKEK 614
            SSI     +H F  GD+SHP+T EI+ KL+E+  ++++AG+VPD + ++   E D +EK
Sbjct: 489 LSSIYVNDSVHRFSSGDRSHPRTKEIYLKLNEVIERIRSAGYVPDVSGLVSHSEGDLEEK 548

Query: 615 EAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSR 674
           E  L  HSE+LA+ FGL+  K  +P+ + KNLR+C DCHS  K++S +Y+REII+RD +R
Sbjct: 549 EQALCCHSEKLAVCFGLLETKPSTPLLVFKNLRICRDCHSAMKIVSKVYDREIIIRDRNR 608

Query: 675 FHHFKNGSCSCKDFW 689
           FH FK GSCSC D+W
Sbjct: 609 FHQFKGGSCSCSDYW 623


>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 205/568 (36%), Positives = 335/568 (58%), Gaps = 21/568 (3%)

Query: 137 AIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLID 196
           A++EG+++H  + K  +    ++ + L+  Y K   ++  R+V D M +K++VSW  +I 
Sbjct: 66  ALREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMIS 125

Query: 197 GYVKKGEVEVAMKLFDEMPDRD----LFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVS 252
            Y + G    A+ +F EM   D     F++  ++    +   + + ++I     +  +V 
Sbjct: 126 RYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALGKQI-----HGLIVK 180

Query: 253 WN---------AMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALEL 303
           WN         ++++ Y KAG ++ A E+F+ +  RD+++  ++IAGY   G   EALE+
Sbjct: 181 WNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEM 240

Query: 304 LETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSK 363
            + +    + PN  T  S L+A++GLA+L+ G+  H ++++       VL   LI MYSK
Sbjct: 241 FQRLQSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSK 300

Query: 364 CGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMC-RMGMKPTAITFIG 422
           CG++  A  +F  + ++    W AM+VG   HG+  + L+LF  M     +KP A+T + 
Sbjct: 301 CGNLSYAQRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLA 360

Query: 423 VLNACSHAGLVNDGRRYFNMMI-NDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPM 481
           VL+ CSH  + + G   ++ M+  +YGI+P  EHYGC+VD+L R G ++EA   I+ MP 
Sbjct: 361 VLSGCSHGKMEDTGLSIYDGMVAGEYGIKPDTEHYGCIVDMLGRAGRIDEAFEFIKRMPS 420

Query: 482 RPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEV 541
           +P   +  SLL   R H + DIGEY  + LI++ P+  G YV+LSN+YA+AG+W+ V+ V
Sbjct: 421 KPTAGVLGSLLGACRVHLSVDIGEYVGHRLIEIEPENAGNYVILSNLYASAGRWEDVNNV 480

Query: 542 REMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDT 601
           R MM ++   K+PG S I+H   LH F   D++HP+ +E+ +K+ E+  K+K AG+VPD 
Sbjct: 481 RAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYVPDI 540

Query: 602 TQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSG 661
           + VL  + D+++KE  L  HSE+LA+ FGLI      PIR+ KNLR+C DCH+  K+ S 
Sbjct: 541 SCVLYDV-DEEQKEKMLLGHSEKLALTFGLITTGEGIPIRVFKNLRICVDCHNFAKIFSK 599

Query: 662 IYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           ++ RE+ +RD +RFH    G CSC D+W
Sbjct: 600 VFEREVSLRDKNRFHQIVKGICSCGDYW 627



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 109/402 (27%), Positives = 185/402 (46%), Gaps = 44/402 (10%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLI 94
           +E Q++HA  +KT  +  + + +RLL  Y     + L  AR + D  +   ++V +  +I
Sbjct: 68  REGQRVHAHMIKTRYLPATYLRTRLLIFY--GKCDCLEDARKVLDE-MPEKNVVSWTAMI 124

Query: 95  KCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFG 154
             Y     S EAL++F +++     P+ FT   V+    R   +  GKQIHGL+ K  + 
Sbjct: 125 SRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALGKQIHGLIVKWNYD 184

Query: 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214
              FV SSL+ MYAK G+I+  R +F+ + ++D+VS   +I GY + G  E A+++F  +
Sbjct: 185 SHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFQRL 244

Query: 215 PDRDL----FSWTCLVDGFSKCGKVEIAREIFYRMPNRNL----VSWNAMINGYMKAGDV 266
               +     ++  L+   S    ++  ++    +  R L    V  N++I+ Y K G++
Sbjct: 245 QSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNL 304

Query: 267 DSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGD-VLPNDATLVSALSA 325
             A  LFD+M  R  I+WN+M+ GY  +G   E LEL   M     V P+  TL++ LS 
Sbjct: 305 SYAQRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSG 364

Query: 326 VAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHW 385
            +   + + G  ++  +V   + +                             K    H+
Sbjct: 365 CSHGKMEDTGLSIYDGMVAGEYGI-----------------------------KPDTEHY 395

Query: 386 TAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNAC 427
             ++  LG  G   +A +      RM  KPTA     +L AC
Sbjct: 396 GCIVDMLGRAGRIDEAFEFIK---RMPSKPTAGVLGSLLGAC 434



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 129/296 (43%), Gaps = 51/296 (17%)

Query: 294 NGRFMEALELLETMLIGDVLP---NDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVD 350
           NGR  EAL  LE +++G  +     DA L + L   A    L +G+ +H++++K  ++  
Sbjct: 32  NGRLQEAL--LEMVMLGPEIGFHCYDALLNACLDKRA----LREGQRVHAHMIKTRYLPA 85

Query: 351 GVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCR 410
             L T L+  Y KC  +E A  V   + +K V  WTAMI      G +++AL +F +M R
Sbjct: 86  TYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALSVFAEMMR 145

Query: 411 MGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLE 470
              KP   TF  VL +C  A  +  G++   +++  +  +  I     L+D+  + G +E
Sbjct: 146 SDGKPNEFTFATVLTSCIRASGLALGKQIHGLIVK-WNYDSHIFVGSSLLDMYAKAGQIE 204

Query: 471 EAKSTIESMP----------------------------------MRPNFVIWMSLLSGAR 496
           EA+   E +P                                  MRPN+V + SLL+   
Sbjct: 205 EAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFQRLQSEGMRPNYVTYASLLTALS 264

Query: 497 NHGNKDIGEYAANNLIKVAPDTIGCYVVLSN----IYAAAGQWDKVSEVREMMKKR 548
                D G+ A  ++++     +  Y VL N    +Y+  G       + + M +R
Sbjct: 265 GLALLDHGKQAHCHVLR---RELPFYAVLQNSLIDMYSKCGNLSYAQRLFDNMPER 317


>gi|326528029|dbj|BAJ89066.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 639

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 229/594 (38%), Positives = 326/594 (54%), Gaps = 14/594 (2%)

Query: 15  LQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYA 74
           ++QHL S  H         H   Q+LHA  +K  L      +S+L+S Y       L  +
Sbjct: 57  VEQHLASLPH----GLQHLH-HVQELHAQLLKHGLHLDPLAASKLISSYALQ--RRLPAS 109

Query: 75  RSIFDRILQ-HPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA 133
           R IF        +  L N L++ Y  N   H A++LF  +  R    D+FT   +IK  +
Sbjct: 110 RRIFASFPNPQATTFLPNTLLRAYALNALPHAAVSLFSAMPQR----DSFTYSFLIKALS 165

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
             G +   + +H  V KLG   D +V ++L+  Y+K G      +VF+ M  +D VSWN 
Sbjct: 166 SSG-LTPLRAVHSHVVKLGSIEDTYVGNALIDAYSKNGGFLDASKVFEEMPRRDTVSWNS 224

Query: 194 LIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSW 253
            +   V++GEV  A ++FDEMPD+D  SW  ++DG++K GK+E A E+F  MP RN+VSW
Sbjct: 225 AMAAMVRQGEVASARRMFDEMPDKDTVSWNTVLDGYTKAGKMEDAFELFQCMPERNVVSW 284

Query: 254 NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVL 313
           + +++GY K GD++ A  +FD M  ++L+TW  M++    NG   EA  L   M    V 
Sbjct: 285 STVVSGYCKKGDIEMARVIFDKMPTKNLVTWTIMVSACAQNGLVEEAGRLFTQMKEAAVE 344

Query: 314 PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTV 373
            + A +VS L+A A    L  G+ +H Y+          +   +I M+ KCG +  A  V
Sbjct: 345 LDVAAVVSILAACAESGSLALGKRIHRYVRTRQLGRSTHVCNAMIDMFCKCGCVNRADYV 404

Query: 374 FRA-ISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGL 432
           F   I++K    W  +I G  MHG   +ALD F +M   G +P A+T I VL+AC+H G 
Sbjct: 405 FDTEIAEKDSVSWNTIIGGFAMHGHGDKALDFFAQMKLQGFRPDAVTMINVLSACTHMGF 464

Query: 433 VNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLL 492
           V +GR++F+ M  DYGI P IEHYGC++D+L R G +EEA   I+SMP  PN VIW SLL
Sbjct: 465 VEEGRQHFSNMERDYGIVPQIEHYGCMIDLLGRGGLIEEAVGLIKSMPWDPNEVIWGSLL 524

Query: 493 SGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRK 552
           S  R H N +  E A N L K+ P   G Y VLSNIYA AGQW  +++ R  MK  G +K
Sbjct: 525 SACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQWSDMAKARMQMKGTGSQK 584

Query: 553 DPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLL 606
             GSS IE     HEF VGD+ H  +D+I   +  + + +K  G VP   ++L+
Sbjct: 585 SAGSSWIELDEAFHEFTVGDRKHSDSDQISEMVDRLSSHVKDVGCVPTAHELLV 638


>gi|297804786|ref|XP_002870277.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316113|gb|EFH46536.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 684

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 240/670 (35%), Positives = 366/670 (54%), Gaps = 15/670 (2%)

Query: 31  SSTHKETQQLHALSVKT-NLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVL 89
           +S+ +  + +HA  VKT +      +++ L+++Y    +++   AR +  R+    ++V 
Sbjct: 19  TSSMRLGRVVHARIVKTLDSPPPPFLANYLINMY--SKLDHPESARLVL-RLTPARNVVS 75

Query: 90  YNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVF 149
           +  L+     N     AL  F ++    + P++FT PCV K  A L     GKQIH L  
Sbjct: 76  WTSLVSGLAQNGHFSTALFEFFEMRREGVAPNDFTFPCVFKAVASLRLPVTGKQIHALAV 135

Query: 150 KLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMK 209
           K G   D FV  S   MY K    D  R++FD + +++L +WN  I   V  G  + A++
Sbjct: 136 KCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAYISNSVTDGRPKEAIE 195

Query: 210 LFDEM------PDRDLFS--WTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYM 261
            F E       P+   F        DG      +++   +F    + ++  +N +I+ Y 
Sbjct: 196 AFIEFRRIGGQPNSITFCGFLNACSDGLLLDLGMQMHGLVFRSGFDTDVSVYNGLIDFYG 255

Query: 262 KAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVS 321
           K   + S+  +F +M +++ ++W S++A Y  N    +A  L        V  +D  + S
Sbjct: 256 KCKQIRSSEIIFAEMGMKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKEIVETSDFMISS 315

Query: 322 ALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKK 381
            LSA AG+A L  GR +H++ VK     +  +G+ L+ MY KCG IE +   F  + +K 
Sbjct: 316 VLSACAGMAGLELGRSIHAHAVKACVERNIFVGSALVDMYGKCGCIEDSEQAFDEMPEKN 375

Query: 382 VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA--ITFIGVLNACSHAGLVNDGRRY 439
           +    ++I G    G    AL LF  M   G  P    +TF+ +L+ACS AG V +G + 
Sbjct: 376 LVTLNSLIGGYAHQGQVDMALALFEDMAPRGCGPAPNYMTFVSLLSACSRAGAVENGMKI 435

Query: 440 FNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
           F+ M + YGIEP  EHY C+VD+L R G +E+A   I+ MP++P   +W +L +  R HG
Sbjct: 436 FDSMKSTYGIEPGAEHYSCIVDMLGRAGMVEQAFEFIKKMPIKPTISVWGALQNACRMHG 495

Query: 500 NKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSI 559
              +G  AA NL K+ P   G +V+LSN +AAAG+W + + VRE MK  G +K  G S I
Sbjct: 496 KPHLGILAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREEMKGVGIKKGAGYSWI 555

Query: 560 EHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELE 619
             +  +H F   D+SH    EI + L+++RNK++AAG+ PD    L  +E++ EK AE+ 
Sbjct: 556 TVKNQVHAFQAKDRSHKMNKEIQTMLTKLRNKMEAAGYKPDLKLSLYDLEEE-EKAAEVS 614

Query: 620 NHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFK 679
           +HSE+LA+AFGL+ +    PIRI KNLR+C DCHS  K +SG   REIIVRDN+RFH FK
Sbjct: 615 HHSEKLALAFGLVALPLSVPIRITKNLRICGDCHSFFKFVSGSVKREIIVRDNNRFHRFK 674

Query: 680 NGSCSCKDFW 689
           +G CSCKD+W
Sbjct: 675 DGICSCKDYW 684



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 105/481 (21%), Positives = 195/481 (40%), Gaps = 87/481 (18%)

Query: 124 TLPCVIKGAARLGAIKEGKQIHGLVFK-LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDA 182
            L  ++K A    +++ G+ +H  + K L      F+ + L++MY+K    +  R V   
Sbjct: 8   ALGLLLKNAISTSSMRLGRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRL 67

Query: 183 MDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLVDGFS-------- 230
              +++VSW  L+ G  + G    A+  F EM    +    F++ C+    +        
Sbjct: 68  TPARNVVSWTSLVSGLAQNGHFSTALFEFFEMRREGVAPNDFTFPCVFKAVASLRLPVTG 127

Query: 231 --------KCGKV-------------------EIAREIFYRMPNRNLVSWNAMINGYMKA 263
                   KCG++                   + AR++F  +P RNL +WNA I+  +  
Sbjct: 128 KQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAYISNSVTD 187

Query: 264 GDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSAL 323
           G    A E F  +E R             + G+                 PN  T    L
Sbjct: 188 GRPKEAIEAF--IEFR------------RIGGQ-----------------PNSITFCGFL 216

Query: 324 SAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVG 383
           +A +   +L+ G  MH  + ++GF  D  +   LI  Y KC  I S+  +F  +  K   
Sbjct: 217 NACSDGLLLDLGMQMHGLVFRSGFDTDVSVYNGLIDFYGKCKQIRSSEIIFAEMGMKNAV 276

Query: 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMM 443
            W +++     +    +A  L+ +  +  ++ +      VL+AC+    +  GR      
Sbjct: 277 SWCSLVAAYVQNHEDEKASVLYLRSRKEIVETSDFMISSVLSACAGMAGLELGRS----- 331

Query: 444 INDYGIEPTIEHY----GCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499
           I+ + ++  +E        LVD+  + G +E+++   + MP + N V   SL+ G  + G
Sbjct: 332 IHAHAVKACVERNIFVGSALVDMYGKCGCIEDSEQAFDEMPEK-NLVTLNSLIGGYAHQG 390

Query: 500 NKDIG----EYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPG 555
             D+     E  A      AP+ +  +V L +  + AG  +   ++ + MK   +  +PG
Sbjct: 391 QVDMALALFEDMAPRGCGPAPNYM-TFVSLLSACSRAGAVENGMKIFDSMKST-YGIEPG 448

Query: 556 S 556
           +
Sbjct: 449 A 449


>gi|242079743|ref|XP_002444640.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
 gi|241940990|gb|EES14135.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
          Length = 690

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 220/577 (38%), Positives = 324/577 (56%), Gaps = 10/577 (1%)

Query: 35  KETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHP----SLVLY 90
           +  Q+LHA  ++  L      +S+L++ Y    +  +   R +F      P    + +L 
Sbjct: 118 RHVQELHAQVLRQGLHRDPRAASKLIASYA--LLRRVPACRCVFSAAAAPPFAPSTALLA 175

Query: 91  NLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFK 150
           N L++ Y  N   H AL +F D+  R    D FT   +IK  A  G +   +  H  VFK
Sbjct: 176 NTLLRAYALNSLPHAALAVFVDMPLRQR--DTFTYSFLIKALATAG-VTPVRAAHTHVFK 232

Query: 151 LGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKL 210
           LG   D FV ++L+  Y+K   +   ++VFD M  +D+VSWN  +   V+KGEV+ A  +
Sbjct: 233 LGSVEDTFVGNALIDAYSKNDGLSDAKKVFDEMTTRDVVSWNTAMAAMVRKGEVDAARSM 292

Query: 211 FDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSAC 270
           FDEMP++D  SW  ++DG++K G+ E A E+F RMP RN+VSW+ +++ Y K GD++ A 
Sbjct: 293 FDEMPEKDTVSWNTMLDGYAKAGEAEEAFELFQRMPGRNVVSWSTVVSAYCKKGDMEMAR 352

Query: 271 ELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLA 330
            +FD M  ++L+TW  M++     G   EA  L   M    +  +   +VS L+A A   
Sbjct: 353 VIFDKMPAKNLVTWTIMVSACAQKGLVGEAGRLFTEMKEAAIELDVVAVVSILAACAESG 412

Query: 331 VLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRA-ISKKKVGHWTAMI 389
            L  G+ +H ++ +       ++   L+ M+ KCG +  A  +F   I +K    W  +I
Sbjct: 413 CLALGKRIHRHVRQRKLGRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDSVSWNIII 472

Query: 390 VGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGI 449
            G  MHG   +AL+LF +M + G  P A+T I VL+AC+H GLV +GRR+F  M  DYGI
Sbjct: 473 GGFAMHGHGEKALNLFTQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFANMETDYGI 532

Query: 450 EPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAAN 509
           +P IEHYGC+VD+L R G ++EA   I+SMP  PN VIW SLLS  R H N +  E AAN
Sbjct: 533 KPEIEHYGCMVDLLGRGGLIKEAVDMIKSMPWEPNEVIWGSLLSACRLHKNVEYAELAAN 592

Query: 510 NLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFV 569
            L  + P   G Y VLSNIYA AG+W  +++ R  MK  G +K  GSS IE     HEF 
Sbjct: 593 ELSNLQPSNAGNYAVLSNIYAEAGKWSDMAKARVQMKGTGSQKTAGSSWIELDEAFHEFT 652

Query: 570 VGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLL 606
           VGD+ HP++D+I   +  + + +K  G VP   ++L+
Sbjct: 653 VGDRKHPESDQISDMIDRLSSHVKCVGCVPVGHELLV 689


>gi|356540347|ref|XP_003538651.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13270,
           chloroplastic-like [Glycine max]
          Length = 753

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 223/643 (34%), Positives = 352/643 (54%), Gaps = 13/643 (2%)

Query: 55  ISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLL 114
           I + +L +Y D    +   A   FD+I+    L  +  +I  Y    R  EA+ LF  +L
Sbjct: 116 IDNCILQMYCD--CKSFTAAERFFDKIVDR-DLSSWATIISAYTEEGRIDEAVGLFLRML 172

Query: 115 DRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEID 174
           D  ++P+      +I   A    +  GKQIH  + ++ F  D  + + + +MY K G +D
Sbjct: 173 DLGIIPNFSIFSTLIMSFADPSMLDLGKQIHSQLIRIEFAADISIETLISNMYVKCGWLD 232

Query: 175 LGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM----PDRDLFSWTCLVDGFS 230
                 + M  K  V+   L+ GY +      A+ LF +M     + D F ++ ++   +
Sbjct: 233 GAEVATNKMTRKSAVACTGLMVGYTQAARNRDALLLFSKMISEGVELDGFVFSIILKACA 292

Query: 231 KCGKVEIAREIFYRMPNRNLVS----WNAMINGYMKAGDVDSACELFDDMEIRDLITWNS 286
             G +   ++I        L S       +++ Y+K    ++A + F+ +   +  +W++
Sbjct: 293 ALGDLYTGKQIHSYCIKLGLESEVSVGTPLVDFYVKCARFEAARQAFESIHEPNDFSWSA 352

Query: 287 MIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNG 346
           +IAGY  +G+F  ALE+ +T+    VL N     +   A + ++ L  G  +H+  +K G
Sbjct: 353 LIAGYCQSGKFDRALEVFKTIRSKGVLLNSFIYNNIFQACSAVSDLICGAQIHADAIKKG 412

Query: 347 FVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFN 406
            V      + +I MYSKCG ++ A   F AI K     WTA+I     HG A++AL LF 
Sbjct: 413 LVAYLSGESAMITMYSKCGKVDYAHQAFLAIDKPDTVAWTAIICAHAYHGKASEALRLFK 472

Query: 407 KMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRT 466
           +M   G++P  +TFIG+LNACSH+GLV +G+++ + M + YG+ PTI+HY C++DI  R 
Sbjct: 473 EMQGSGVRPNVVTFIGLLNACSHSGLVKEGKQFLDSMTDKYGVNPTIDHYNCMIDIYSRA 532

Query: 467 GYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLS 526
           G L EA   I SMP  P+ + W SLL G  +  N +IG  AA+N+ ++ P     YV++ 
Sbjct: 533 GLLLEALEVIRSMPFEPDVMSWKSLLGGCWSRRNLEIGMIAADNIFRLDPLDSATYVIMF 592

Query: 527 NIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLS 586
           N+YA AG+WD+ ++ R+MM +R  RK+   S I  +G +H FVVGD+ HPQT++I+SKL 
Sbjct: 593 NLYALAGKWDEAAQFRKMMAERNLRKEVSCSWIIVKGKVHRFVVGDRHHPQTEQIYSKLK 652

Query: 587 EMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNL 646
           E+    K         +  LC  D  E++ +L +HSERLAIA+GLI   + +PI + KN 
Sbjct: 653 ELNVSFKKGEERLLNEENALC--DFTERKDQLLDHSERLAIAYGLICTAADTPIMVFKNT 710

Query: 647 RVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689
           R C DCH   K +S +  RE++VRD +RFHH  +G CSC+D+W
Sbjct: 711 RSCKDCHEFAKRVSVVTGRELVVRDGNRFHHINSGECSCRDYW 753



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/382 (24%), Positives = 170/382 (44%), Gaps = 15/382 (3%)

Query: 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD 187
           + K    LGA+ +GK  H  + ++    +KF+ + ++ MY          R FD + D+D
Sbjct: 86  LFKMCGTLGALSDGKLFHNRLQRMA-NSNKFIDNCILQMYCDCKSFTAAERFFDKIVDRD 144

Query: 188 LVSWNCLIDGYVKKGEVEVAMKLFDEM------PDRDLFSWTCLVDGFSKCGKVEIAREI 241
           L SW  +I  Y ++G ++ A+ LF  M      P+  +FS   L+  F+    +++ ++I
Sbjct: 145 LSSWATIISAYTEEGRIDEAVGLFLRMLDLGIIPNFSIFS--TLIMSFADPSMLDLGKQI 202

Query: 242 ---FYRMPNRNLVSWNAMI-NGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRF 297
                R+     +S   +I N Y+K G +D A    + M  +  +    ++ GY    R 
Sbjct: 203 HSQLIRIEFAADISIETLISNMYVKCGWLDGAEVATNKMTRKSAVACTGLMVGYTQAARN 262

Query: 298 MEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLL 357
            +AL L   M+   V  +       L A A L  L  G+ +HSY +K G   +  +GT L
Sbjct: 263 RDALLLFSKMISEGVELDGFVFSIILKACAALGDLYTGKQIHSYCIKLGLESEVSVGTPL 322

Query: 358 IQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA 417
           +  Y KC   E+A   F +I +     W+A+I G    G   +AL++F  +   G+   +
Sbjct: 323 VDFYVKCARFEAARQAFESIHEPNDFSWSALIAGYCQSGKFDRALEVFKTIRSKGVLLNS 382

Query: 418 ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIE 477
             +  +  ACS    +  G +     I   G+   +     ++ +  + G ++ A     
Sbjct: 383 FIYNNIFQACSAVSDLICGAQIHADAIKK-GLVAYLSGESAMITMYSKCGKVDYAHQAFL 441

Query: 478 SMPMRPNFVIWMSLLSGARNHG 499
           ++  +P+ V W +++     HG
Sbjct: 442 AID-KPDTVAWTAIICAHAYHG 462



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 122/259 (47%), Gaps = 2/259 (0%)

Query: 244 RMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALEL 303
           RM N N    N ++  Y       +A   FD +  RDL +W ++I+ Y   GR  EA+ L
Sbjct: 108 RMANSNKFIDNCILQMYCDCKSFTAAERFFDKIVDRDLSSWATIISAYTEEGRIDEAVGL 167

Query: 304 LETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSK 363
              ML   ++PN +   + + + A  ++L+ G+ +HS +++  F  D  + TL+  MY K
Sbjct: 168 FLRMLDLGIIPNFSIFSTLIMSFADPSMLDLGKQIHSQLIRIEFAADISIETLISNMYVK 227

Query: 364 CGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGV 423
           CG ++ A      +++K     T ++VG         AL LF+KM   G++     F  +
Sbjct: 228 CGWLDGAEVATNKMTRKSAVACTGLMVGYTQAARNRDALLLFSKMISEGVELDGFVFSII 287

Query: 424 LNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRP 483
           L AC+  G +  G++  +  I   G+E  +     LVD   +    E A+   ES+   P
Sbjct: 288 LKACAALGDLYTGKQIHSYCIK-LGLESEVSVGTPLVDFYVKCARFEAARQAFESIH-EP 345

Query: 484 NFVIWMSLLSGARNHGNKD 502
           N   W +L++G    G  D
Sbjct: 346 NDFSWSALIAGYCQSGKFD 364


>gi|20146256|dbj|BAB89038.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
            sativa Japonica Group]
 gi|125571007|gb|EAZ12522.1| hypothetical protein OsJ_02419 [Oryza sativa Japonica Group]
          Length = 1062

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 233/681 (34%), Positives = 380/681 (55%), Gaps = 24/681 (3%)

Query: 27   ILKFSSTH---KETQQLHALSVKTNLIYHS-GISSRLLSLYVDPHINNLHYARSIFDRIL 82
            I +FS+     ++ +++HA  ++   IY    +S+ L+++Y       +  A  +F +++
Sbjct: 388  IAEFSTAEQGLRKGREVHAHVLRAGHIYRKIAVSNGLVNMYAK--CGAIDKACRVF-QLM 444

Query: 83   QHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGK 142
            +    + +N +I     N     A+  +C +    + P NF     +   A LG +  G+
Sbjct: 445  EARDRISWNTIITALDQNGYCEAAMMNYCLMRQNSIGPSNFAAISGLSSCAGLGLLAAGQ 504

Query: 143  QIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKG 202
            Q+H    K G   D  V ++LV MY + G +     +F++M   D+VSWN ++ G +   
Sbjct: 505  QLHCDAVKWGLYLDTSVSNALVKMYGECGRMSECWEIFNSMSAHDVVSWNSIM-GVMASS 563

Query: 203  EVEV--AMKLFDEMPDRDLF----SWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAM 256
            +  +  ++++F  M    L     ++   +   +    +E+ ++I   M    +   NA+
Sbjct: 564  QAPITESVQVFSNMMKSGLVPNKVTFVNFLAALTPLSVLELGKQIHSVMLKHGVTEDNAV 623

Query: 257  ING----YMKAGDVDSACELFDDME-IRDLITWNSMIAGYELNGRFMEALELLETMLIGD 311
             N     Y K+GDVDS   LF  M   RD I+WNSMI+GY  NG   EA++ +  M+  +
Sbjct: 624  DNALMSCYAKSGDVDSCERLFSRMSGRRDAISWNSMISGYIYNGHLQEAMDCVCLMMHSE 683

Query: 312  VLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESAL 371
             + +  T    L+A A +A L +G  MH++ +++    D V+ + L+ MYSKCG I+ A 
Sbjct: 684  QMMDHCTFSIVLNACASVAALERGMEMHAFGLRSHLESDVVVESALVDMYSKCGRIDYAS 743

Query: 372  TVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAG 431
             VF ++S+K    W +MI G   HG+  +AL++F +M   G  P  +TF+ VL+ACSHAG
Sbjct: 744  KVFHSMSQKNEFSWNSMISGYARHGLGRKALEIFEEMQESGESPDHVTFVSVLSACSHAG 803

Query: 432  LVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSL 491
            LV  G  YF +M  DYGI P IEHY C++D+L R G L++ +  ++ MPM+PN +IW ++
Sbjct: 804  LVERGLDYFELM-EDYGILPRIEHYSCVIDLLGRAGELDKIQEYMKRMPMKPNTLIWRTV 862

Query: 492  LSGARNHGNK---DIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548
            L   +   ++   D+G  A+  L+++ P     YV+ S  +AA G+W+  ++ R  MK  
Sbjct: 863  LVACQQSKHRAKIDLGTEASRMLLELEPQNPVNYVLSSKFHAAIGRWEDTAKARAAMKGA 922

Query: 549  GFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCI 608
              +K+ G S +     +H F+ GD+SHP T EI+ KL+ +  K++ AG+VP  T+ +L  
Sbjct: 923  AVKKEAGRSWVTLTDGVHTFIAGDRSHPNTKEIYEKLNFLIQKIRNAGYVP-LTEYVLHD 981

Query: 609  EDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREII 668
             +++ KE  L  HSE+LA+AF L    S  PIRI+KNLRVC DCH+  + +S I  R+II
Sbjct: 982  LEEENKEELLRYHSEKLAVAFVLTRSSSGGPIRIMKNLRVCGDCHTAFRYISQIVGRQII 1041

Query: 669  VRDNSRFHHFKNGSCSCKDFW 689
            +RD+ RFHHFK+G CSC D+W
Sbjct: 1042 LRDSIRFHHFKDGKCSCGDYW 1062



 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 130/507 (25%), Positives = 233/507 (45%), Gaps = 39/507 (7%)

Query: 10  SPIHALQQHLPSRLHWNILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHIN 69
           S + A Q   P RL + +           Q+H L  KT    ++ + + L+S+Y    + 
Sbjct: 173 SVLRACQDSGPDRLGFAV-----------QVHGLVSKTEFTSNTTVCNALISMYGSCSVG 221

Query: 70  NLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLF----CDLLDRFLLPDNFTL 125
               A+ +FD       L+ +N L+  Y     +    TLF     D     L P   T 
Sbjct: 222 PPILAQRVFDTTPVR-DLITWNALMSVYAKRGDAICTFTLFRAMQYDDSGIELRPTEHTF 280

Query: 126 PCVIKGAARLGAIKEG--KQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAM 183
             +I  A  L +   G   Q+   V K G   D +V S+LVS +A+ G +D  + ++  +
Sbjct: 281 GSLIT-ATYLSSCSLGLLDQLFVRVLKSGCSSDLYVGSALVSAFARHGMLDEAKDIYLGL 339

Query: 184 DDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRD-----LFSWTCLVDGFSKCGKVEI- 237
            +++ V+ N LI G VK+   E A ++F  M  RD     + ++  L+   ++    E  
Sbjct: 340 KERNAVTLNGLIAGLVKQQHGEAAAEIF--MGARDSAAVNVDTYVVLLSAIAEFSTAEQG 397

Query: 238 ---AREIFYRMPN-----RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIA 289
               RE+   +       R +   N ++N Y K G +D AC +F  ME RD I+WN++I 
Sbjct: 398 LRKGREVHAHVLRAGHIYRKIAVSNGLVNMYAKCGAIDKACRVFQLMEARDRISWNTIIT 457

Query: 290 GYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVV 349
             + NG    A+     M    + P++   +S LS+ AGL +L  G+ +H   VK G  +
Sbjct: 458 ALDQNGYCEAAMMNYCLMRQNSIGPSNFAAISGLSSCAGLGLLAAGQQLHCDAVKWGLYL 517

Query: 350 DGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMA--TQALDLFNK 407
           D  +   L++MY +CG +     +F ++S   V  W + I+G+     A  T+++ +F+ 
Sbjct: 518 DTSVSNALVKMYGECGRMSECWEIFNSMSAHDVVSWNS-IMGVMASSQAPITESVQVFSN 576

Query: 408 MCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTG 467
           M + G+ P  +TF+  L A +   ++  G++  ++M+  +G+         L+    ++G
Sbjct: 577 MMKSGLVPNKVTFVNFLAALTPLSVLELGKQIHSVMLK-HGVTEDNAVDNALMSCYAKSG 635

Query: 468 YLEEAKSTIESMPMRPNFVIWMSLLSG 494
            ++  +     M  R + + W S++SG
Sbjct: 636 DVDSCERLFSRMSGRRDAISWNSMISG 662



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 106/432 (24%), Positives = 186/432 (43%), Gaps = 44/432 (10%)

Query: 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193
           R G     + +H  V K G   D F+ + LV+ YAK   +D  RRVFD M  ++ VSW C
Sbjct: 77  RPGCDASPESLHLEVVKRGLTHDLFLANHLVNSYAKGARLDAARRVFDGMPGRNAVSWTC 136

Query: 194 LIDGYVKKGEVEVAMKLFDEM----PDRDLFSWT-------CLVDGFSKCG-KVEIAREI 241
           LI G+V  G  E A  LF  M    P     S+T       C   G  + G  V++   +
Sbjct: 137 LISGHVLSGLPEDAFPLFRAMLREGPGCRPTSFTFGSVLRACQDSGPDRLGFAVQVHGLV 196

Query: 242 FYRMPNRNLVSWNAMIN--GYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFME 299
                  N    NA+I+  G    G    A  +FD   +RDLITWN++++ Y   G  + 
Sbjct: 197 SKTEFTSNTTVCNALISMYGSCSVGPPILAQRVFDTTPVRDLITWNALMSVYAKRGDAIC 256

Query: 300 ALELLETMLIGD----VLPNDATLVSALSAV----AGLAVLNKGRWMHSYIVKNGFVVDG 351
              L   M   D    + P + T  S ++A       L +L++   +   ++K+G   D 
Sbjct: 257 TFTLFRAMQYDDSGIELRPTEHTFGSLITATYLSSCSLGLLDQ---LFVRVLKSGCSSDL 313

Query: 352 VLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRM 411
            +G+ L+  +++ G ++ A  ++  + ++       +I GL        A ++F     M
Sbjct: 314 YVGSALVSAFARHGMLDEAKDIYLGLKERNAVTLNGLIAGLVKQQHGEAAAEIF-----M 368

Query: 412 GMKPTAI----TFIGVLNACSHAGLVND----GRRYFNMMINDYGIEPTIEHYGCLVDIL 463
           G + +A     T++ +L+A +           GR     ++    I   I     LV++ 
Sbjct: 369 GARDSAAVNVDTYVVLLSAIAEFSTAEQGLRKGREVHAHVLRAGHIYRKIAVSNGLVNMY 428

Query: 464 CRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGC-- 521
            + G +++A    + M  R + + W ++++    +G     E A  N   +  ++IG   
Sbjct: 429 AKCGAIDKACRVFQLMEAR-DRISWNTIITALDQNG---YCEAAMMNYCLMRQNSIGPSN 484

Query: 522 YVVLSNIYAAAG 533
           +  +S + + AG
Sbjct: 485 FAAISGLSSCAG 496


>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
 gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
          Length = 539

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 202/494 (40%), Positives = 304/494 (61%), Gaps = 23/494 (4%)

Query: 218 DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDME 277
           DLF    LVD ++KCG V+ A ++F R+  +++VSWNAM+NGY + G  + A  LF+ M 
Sbjct: 47  DLFVGNALVDMYAKCGMVDEASKVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMR 106

Query: 278 IRDL----ITWNSMIAGYELNGRFMEALELLETMLIGD-----------------VLPND 316
             ++    ++W+++IA +   G   E L++   M  G+                 V PN 
Sbjct: 107 EENIELNVVSWSAVIAAFAQRGLGCETLDVFREMQHGEANDALELFSWMFKQDGLVKPNC 166

Query: 317 ATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV-LGTLLIQMYSKCGSIESALTVFR 375
            T+  AL A A LA L  GR +H+YI++N F    + +   LI MY+K G I+ A  VF 
Sbjct: 167 FTISCALIACARLAALRLGRQIHAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFD 226

Query: 376 AISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVND 435
            + +K    WT+++ G GMHG   +AL++F++M R+G++P  +T + VL ACSH+G+++ 
Sbjct: 227 NLKQKNFVSWTSLMTGYGMHGRGKEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQ 286

Query: 436 GRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGA 495
           G  +FN M  ++G+ P  EHY C+VD+L R G L EA   IE M M P+ ++W++LLSG 
Sbjct: 287 GIEFFNSMSKEFGVIPGQEHYACMVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGC 346

Query: 496 RNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPG 555
           R H N ++GE+AA  L+++  +  G Y +LSNIYA A +W  V+ VR +MK  G RK PG
Sbjct: 347 RIHANVELGEHAAKQLLELNSENDGSYTLLSNIYANARRWKDVARVRSLMKNSGIRKRPG 406

Query: 556 SSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKE 615
            S ++ +     F V DK+HPQ+ +I+  L  +  ++K  G+VP+T+  L  ++D+ EK 
Sbjct: 407 CSWVQGKKGTTTFYVADKTHPQSKQIYEILRSLTQRIKVLGYVPETSFALHDVDDE-EKV 465

Query: 616 AELENHSERLAIAFGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRF 675
             L  HSE+LA+A+G++     +PIRI KNLRVC DCH+    +S I + EII+RD+SRF
Sbjct: 466 DLLFEHSEKLALAYGILISAPGAPIRITKNLRVCGDCHNAITYISMIIDHEIILRDSSRF 525

Query: 676 HHFKNGSCSCKDFW 689
           HHFK GSCSC  +W
Sbjct: 526 HHFKKGSCSCSGYW 539



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 96/378 (25%), Positives = 171/378 (45%), Gaps = 94/378 (24%)

Query: 111 CDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKF 170
           C L D  + PD  +L  V+   A +GA   GK +HG+  + G   D FV ++LV MYAK 
Sbjct: 2   CKLGDIDMRPDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKC 61

Query: 171 GEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDL----FSWTCLV 226
           G +D   +VFD + +KD+VSWN +++GY + G  E A+ LF++M + ++     SW+ ++
Sbjct: 62  GMVDEASKVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVI 121

Query: 227 DGFSK----CGKVEIAREIFYRMPNR--NLVSW--------------------------- 253
             F++    C  +++ RE+ +   N    L SW                           
Sbjct: 122 AAFAQRGLGCETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAA 181

Query: 254 ------------------------NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIA 289
                                   N +I+ Y K+GD+D A  +FD+++ ++ ++W S++ 
Sbjct: 182 LRLGRQIHAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMT 241

Query: 290 GYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVV 349
           GY ++GR  EALE+ + M    + P+  TL+  L A +   ++++G    + + K   V+
Sbjct: 242 GYGMHGRGKEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMSKEFGVI 301

Query: 350 DGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMC 409
            G                                H+  M+  LG  G   +A++L     
Sbjct: 302 PG------------------------------QEHYACMVDLLGRAGRLNEAMELIEG-- 329

Query: 410 RMGMKPTAITFIGVLNAC 427
            M M+P++I ++ +L+ C
Sbjct: 330 -MQMEPSSIVWVALLSGC 346



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 113/269 (42%), Gaps = 55/269 (20%)

Query: 311 DVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESA 370
           D+ P+  +LV+ L A A +     G+ +H   V++G   D  +G  L+ MY+KCG ++ A
Sbjct: 8   DMRPDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEA 67

Query: 371 LTVFRAISKKKVGHWTAMIVG----------LGM-------------------------- 394
             VF  I +K V  W AM+ G          LG+                          
Sbjct: 68  SKVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQR 127

Query: 395 --------------HGMATQALDLFNKMCRMG--MKPTAITFIGVLNACSHAGLVNDGRR 438
                         HG A  AL+LF+ M +    +KP   T    L AC+    +  GR+
Sbjct: 128 GLGCETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQ 187

Query: 439 YFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNH 498
               ++ ++     +    CL+D+  ++G ++ A+   +++  + NFV W SL++G   H
Sbjct: 188 IHAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQK-NFVSWTSLMTGYGMH 246

Query: 499 GNKDIGEYAANNLIKVA--PDTIGCYVVL 525
           G         + + +V   PD +   VVL
Sbjct: 247 GRGKEALEVFDEMRRVGLQPDGVTLLVVL 275


>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
          Length = 1229

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 235/702 (33%), Positives = 371/702 (52%), Gaps = 57/702 (8%)

Query: 2   QTQTLQHSSPIHALQQHLPSRLHWNILKFSSTHKETQQL---HALSVKTNLIYHSGISSR 58
           Q++ +  S P   L Q  P    + + +   T+ + + L   H+  +  +L  +S +  +
Sbjct: 20  QSRKVSSSLPKLELDQKSPQETVFLLGQVLDTYPDIRTLRTVHSRIILEDLRCNSSLGVK 79

Query: 59  LLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFL 118
           L+  Y    + ++  AR +FD I +  ++++ N++I+ YV N                  
Sbjct: 80  LMRAYAS--LKDVASARKVFDEIPER-NVIIINVMIRSYVNN------------------ 118

Query: 119 LPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRR 178
                            G   EG ++ G +       D +    ++   +  G I +GR+
Sbjct: 119 -----------------GFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRK 161

Query: 179 VFDAMDDKDLVSW----NCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGK 234
           +  +     L S     N L+  Y K G +  A  + DEM  RD+ SW  LV G+++  +
Sbjct: 162 IHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQR 221

Query: 235 VEIAREIFYRMPNRNLVSWNAMINGYMKA------GDVDSACELFDDMEIRDLITWNSMI 288
            + A E+   M +  +      +   + A       +V    ++F  M  + L++WN MI
Sbjct: 222 FDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMI 281

Query: 289 AGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFV 348
             Y  N   +EA+EL   M      P+  ++ S L A    + L+ G+ +H YI +   +
Sbjct: 282 GVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLI 341

Query: 349 VDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKM 408
            + +L   LI MY+KCG +E A  VF  +  + V  WTAMI   G  G    A+ LF+K+
Sbjct: 342 PNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKL 401

Query: 409 CRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGY 468
              G+ P +I F+  L ACSHAGL+ +GR  F +M + Y I P +EH  C+VD+L R G 
Sbjct: 402 QDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGK 461

Query: 469 LEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNI 528
           ++EA   I+ M M PN  +W +LL   R H + DIG  AA+ L ++AP+  G YV+LSNI
Sbjct: 462 VKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNI 521

Query: 529 YAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEM 588
           YA AG+W++V+ +R +MK +G +K+PG+S++E   ++H F+VGD+SHPQ+DEI+ +L  +
Sbjct: 522 YAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYRELDVL 581

Query: 589 RNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVK-----SRSPIRIV 643
             K+K  G+VPD+   L  +E++ +KE  L  HSE+LAI F L+N K     S + IRI 
Sbjct: 582 VKKMKELGYVPDSESALHDVEEE-DKETHLAVHSEKLAIVFALMNTKEEEEDSNNTIRIT 640

Query: 644 KNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSC 685
           KNLR+C DCH   KL+S I +REII+RD +RFH F+ G CSC
Sbjct: 641 KNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSC 682


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.323    0.138    0.421 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,666,071,541
Number of Sequences: 23463169
Number of extensions: 445077450
Number of successful extensions: 1205616
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8386
Number of HSP's successfully gapped in prelim test: 3571
Number of HSP's that attempted gapping in prelim test: 987243
Number of HSP's gapped (non-prelim): 56275
length of query: 689
length of database: 8,064,228,071
effective HSP length: 150
effective length of query: 539
effective length of database: 8,839,720,017
effective search space: 4764609089163
effective search space used: 4764609089163
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 81 (35.8 bits)