BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036237
(689 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 9/121 (7%)
Query: 162 SLVSMYAKFGEIDLGRRVFDA---MDDKDLVSWNCLIDGYVKKGEVEVAMKLFD---EMP 215
+L + Y K G+ D + +D + +W L + Y K+G+ + A++ + E+
Sbjct: 6 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 65
Query: 216 DRDLFSWTCLVDGFSKCGKVEIAREIFYR---MPNRNLVSWNAMINGYMKAGDVDSACEL 272
R +W L + + K G + A E + + + R+ +W + N Y K GD D A E
Sbjct: 66 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEY 125
Query: 273 F 273
+
Sbjct: 126 Y 126
Score = 36.6 bits (83), Expect = 0.053, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 221 SWTCLVDGFSKCGKVEIAREIFYR---MPNRNLVSWNAMINGYMKAGDVDSACELFD--- 274
+W L + + K G + A E + + + R+ +W + N Y K GD D A E +
Sbjct: 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 62
Query: 275 DMEIRDLITWNSMIAGYELNGRFMEALELLETML 308
+++ R W ++ Y G + EA+E + L
Sbjct: 63 ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 96
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 37.0 bits (84), Expect = 0.033, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
Query: 190 SWNCLIDGYVKKGEVEVAMKLFD---EMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM- 245
+W L + Y K+G+ + A++ + E+ + +W L + + K G + A E + +
Sbjct: 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70
Query: 246 ---PNRNLVSWNAMINGYMKAGDVDSACELF 273
PN N +W + N Y K GD D A E +
Sbjct: 71 ELDPN-NAEAWYNLGNAYYKQGDYDEAIEYY 100
Score = 33.9 bits (76), Expect = 0.33, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 246 PNRNLVSWNAMINGYMKAGDVDSACELFD---DMEIRDLITWNSMIAGYELNGRFMEALE 302
P + +W + N Y K GD D A E + +++ + W ++ Y G + EA+E
Sbjct: 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE 64
Query: 303 LLETMLIGDVLPNDA 317
+ L D PN+A
Sbjct: 65 YYQKALELD--PNNA 77
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 36.6 bits (83), Expect = 0.050, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
Query: 190 SWNCLIDGYVKKGEVEVAMKLFD---EMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM- 245
+W L + Y K+G+ + A++ + E+ + +W L + + K G + A E + +
Sbjct: 11 AWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70
Query: 246 ---PNRNLVSWNAMINGYMKAGDVDSACELF 273
PN N +W + N Y K GD D A E +
Sbjct: 71 ELYPN-NAEAWYNLGNAYYKQGDYDEAIEYY 100
Score = 33.1 bits (74), Expect = 0.47, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 246 PNRNLVSWNAMINGYMKAGDVDSACELFD---DMEIRDLITWNSMIAGYELNGRFMEALE 302
P + +W + N Y K GD D A E + ++ + W ++ Y G + EA+E
Sbjct: 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIE 64
Query: 303 LLETMLIGDVLPNDA 317
+ L ++ PN+A
Sbjct: 65 YYQKAL--ELYPNNA 77
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 34.3 bits (77), Expect = 0.25, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 190 SWNCLIDGYVKKGEVEVAMKLFD---EMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRM- 245
+W L + Y K+G+ + A++ + E+ + +W L + + K G + A E + +
Sbjct: 11 AWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKAL 70
Query: 246 ---PNRNLVSWNAMINGYMKAGDVDSACE 271
PN N +W N Y K GD A E
Sbjct: 71 ELDPN-NAKAWYRRGNAYYKQGDYQKAIE 98
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 246 PNRNLVSWNAMINGYMKAGDVDSACELFD---DMEIRDLITWNSMIAGYELNGRFMEALE 302
P + +W + N Y K GD A E + +++ + W ++ Y G + +A+E
Sbjct: 5 PGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIE 64
Query: 303 LLETMLIGDVLPNDA 317
+ L D PN+A
Sbjct: 65 YYQKALELD--PNNA 77
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 18/130 (13%)
Query: 358 IQMYSKCGSIESALTVFRAISKKKVG----HWTAMIVGLGMHGMATQA---------LDL 404
+ M SK G + AL ++ + V H+ ++ + AT++ D+
Sbjct: 33 LDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDI 92
Query: 405 FNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMM--INDYGIEPTIEHYGCLVDI 462
F +M + P TF N A +D F+M+ + +GI+P + YG +
Sbjct: 93 FKQMIVDKVVPNEATFT---NGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFG 149
Query: 463 LCRTGYLEEA 472
CR G ++A
Sbjct: 150 FCRKGDADKA 159
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 33.9 bits (76), Expect = 0.33, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 246 PNRNLVSWNAMINGYMKAGDVDSACELFD---DMEIRDLITWNSMIAGYELNGRFMEALE 302
P + +W + N Y K GD D A E + +++ + W ++ Y G + EA+E
Sbjct: 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE 64
Query: 303 LLETMLIGDVLPNDA 317
+ L D PN+A
Sbjct: 65 YYQKALELD--PNNA 77
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 252 SWNAMINGYMKAGDVDSACELFD---DMEIRDLITWNSMIAGYELNGRFMEALELLETML 308
+W + N Y K GD D A E + +++ R W ++ Y G + EA+E + L
Sbjct: 5 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 64
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,130,451
Number of Sequences: 62578
Number of extensions: 822217
Number of successful extensions: 1767
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1749
Number of HSP's gapped (non-prelim): 22
length of query: 689
length of database: 14,973,337
effective HSP length: 105
effective length of query: 584
effective length of database: 8,402,647
effective search space: 4907145848
effective search space used: 4907145848
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)