Query 036237
Match_columns 689
No_of_seqs 808 out of 4982
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 10:47:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036237.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036237hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 7E-127 1E-131 1099.7 73.4 664 17-687 182-857 (857)
2 PLN03081 pentatricopeptide (PP 100.0 1E-119 3E-124 1015.3 67.5 611 78-689 78-697 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 8.2E-81 1.8E-85 717.3 53.1 643 18-685 82-747 (857)
4 PLN03218 maturation of RBCL 1; 100.0 7.2E-66 1.6E-70 581.4 56.8 497 50-555 367-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 3.4E-62 7.4E-67 551.6 54.0 484 28-517 380-914 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 2.6E-62 5.7E-67 550.7 44.4 422 18-444 119-555 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 9.6E-30 2.1E-34 299.2 55.7 512 27-550 338-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2E-29 4.2E-34 296.6 56.1 509 28-548 305-832 (899)
9 PF14432 DYW_deaminase: DYW fa 100.0 2.9E-30 6.3E-35 214.2 8.5 106 555-679 2-116 (116)
10 PRK11447 cellulose synthase su 99.9 1.1E-21 2.4E-26 232.2 52.9 502 32-549 42-701 (1157)
11 PRK11447 cellulose synthase su 99.9 5.3E-21 1.2E-25 226.4 55.0 511 27-553 121-746 (1157)
12 KOG4626 O-linked N-acetylgluco 99.9 1.9E-21 4.2E-26 194.9 34.9 441 91-541 52-512 (966)
13 PRK09782 bacteriophage N4 rece 99.9 6.6E-19 1.4E-23 199.4 54.5 500 32-549 58-707 (987)
14 PRK09782 bacteriophage N4 rece 99.9 1.9E-18 4.1E-23 195.6 48.5 464 68-548 57-672 (987)
15 KOG4626 O-linked N-acetylgluco 99.9 2.4E-20 5.2E-25 187.1 28.9 409 130-547 56-484 (966)
16 TIGR00990 3a0801s09 mitochondr 99.9 8.2E-18 1.8E-22 187.2 41.2 419 92-548 132-571 (615)
17 PRK11788 tetratricopeptide rep 99.8 1.6E-18 3.5E-23 183.1 30.2 289 260-555 45-354 (389)
18 PRK11788 tetratricopeptide rep 99.8 7.4E-19 1.6E-23 185.6 26.8 299 94-418 42-354 (389)
19 PRK10049 pgaA outer membrane p 99.8 1.6E-16 3.4E-21 180.2 40.7 398 92-519 20-461 (765)
20 PRK10049 pgaA outer membrane p 99.8 3.3E-16 7.1E-21 177.6 41.3 390 124-548 17-456 (765)
21 PRK15174 Vi polysaccharide exp 99.8 1.1E-16 2.5E-21 177.5 35.9 322 191-519 45-386 (656)
22 TIGR00990 3a0801s09 mitochondr 99.8 2.3E-15 5E-20 167.7 42.3 422 58-519 132-576 (615)
23 PRK15174 Vi polysaccharide exp 99.8 6.5E-16 1.4E-20 171.5 36.6 341 200-549 17-382 (656)
24 PRK14574 hmsH outer membrane p 99.8 2.1E-14 4.6E-19 159.8 44.3 429 97-547 44-512 (822)
25 KOG2002 TPR-containing nuclear 99.8 7.8E-15 1.7E-19 155.8 38.6 523 17-548 158-745 (1018)
26 KOG2002 TPR-containing nuclear 99.7 3.6E-14 7.7E-19 150.9 40.4 469 71-550 146-677 (1018)
27 PRK14574 hmsH outer membrane p 99.7 8.2E-14 1.8E-18 155.1 44.7 440 55-521 37-520 (822)
28 KOG4422 Uncharacterized conser 99.6 5.9E-12 1.3E-16 122.3 34.6 401 33-479 130-587 (625)
29 KOG2003 TPR repeat-containing 99.6 1.5E-12 3.2E-17 127.0 29.9 272 258-534 427-709 (840)
30 KOG0495 HAT repeat protein [RN 99.6 9.1E-11 2E-15 119.9 43.6 525 17-563 343-893 (913)
31 KOG2076 RNA polymerase III tra 99.6 6E-11 1.3E-15 126.0 39.1 297 69-369 153-544 (895)
32 KOG4422 Uncharacterized conser 99.6 8.2E-11 1.8E-15 114.5 36.1 407 87-513 116-589 (625)
33 PF13429 TPR_15: Tetratricopep 99.6 1.9E-14 4.1E-19 144.0 11.3 254 288-546 15-275 (280)
34 KOG1155 Anaphase-promoting com 99.5 6.2E-11 1.3E-15 116.7 32.3 326 217-547 162-494 (559)
35 KOG0547 Translocase of outer m 99.5 1.3E-10 2.9E-15 115.0 31.9 412 90-546 118-564 (606)
36 KOG1126 DNA-binding cell divis 99.5 4.4E-12 9.5E-17 130.5 21.5 244 296-547 334-585 (638)
37 KOG1915 Cell cycle control pro 99.5 1.2E-09 2.5E-14 107.9 37.2 473 68-546 86-623 (677)
38 KOG2076 RNA polymerase III tra 99.5 8.9E-11 1.9E-15 124.7 30.7 310 202-547 153-511 (895)
39 PRK10747 putative protoheme IX 99.4 7.2E-11 1.6E-15 123.8 28.2 252 229-514 128-390 (398)
40 KOG1173 Anaphase-promoting com 99.4 1.4E-09 3E-14 110.1 35.5 415 125-547 19-517 (611)
41 KOG4318 Bicoid mRNA stability 99.4 2E-10 4.4E-15 121.4 30.5 431 108-558 11-603 (1088)
42 PRK10747 putative protoheme IX 99.4 1E-10 2.3E-15 122.5 28.9 274 263-546 97-388 (398)
43 KOG1126 DNA-binding cell divis 99.4 2E-11 4.4E-16 125.7 22.2 274 265-547 334-619 (638)
44 KOG2003 TPR repeat-containing 99.4 1.1E-10 2.3E-15 114.2 23.2 412 132-547 211-688 (840)
45 TIGR00540 hemY_coli hemY prote 99.4 8.8E-10 1.9E-14 116.2 31.7 285 199-513 95-398 (409)
46 PF13429 TPR_15: Tetratricopep 99.4 2.4E-12 5.3E-17 128.8 11.2 250 256-513 14-276 (280)
47 TIGR00540 hemY_coli hemY prote 99.4 3E-10 6.4E-15 119.8 27.5 277 168-479 95-396 (409)
48 KOG1155 Anaphase-promoting com 99.4 6E-09 1.3E-13 102.9 33.9 342 196-547 172-535 (559)
49 KOG1915 Cell cycle control pro 99.4 3.7E-08 8E-13 97.6 38.1 453 85-546 71-583 (677)
50 COG2956 Predicted N-acetylgluc 99.3 9.8E-10 2.1E-14 103.6 25.8 277 202-512 49-345 (389)
51 KOG0495 HAT repeat protein [RN 99.3 2.2E-07 4.7E-12 95.8 43.8 387 134-531 388-799 (913)
52 TIGR02521 type_IV_pilW type IV 99.3 3.2E-10 7E-15 110.1 22.6 197 350-547 30-231 (234)
53 KOG2047 mRNA splicing factor [ 99.3 1.4E-07 3.1E-12 97.0 38.4 482 55-545 104-684 (835)
54 KOG2376 Signal recognition par 99.2 6.2E-08 1.3E-12 98.8 34.0 182 355-544 313-516 (652)
55 COG3071 HemY Uncharacterized e 99.2 9.2E-09 2E-13 100.3 26.8 277 263-547 97-389 (400)
56 PF13041 PPR_2: PPR repeat fam 99.2 1.4E-11 3E-16 86.6 5.3 50 85-134 1-50 (50)
57 KOG4318 Bicoid mRNA stability 99.2 4.3E-10 9.2E-15 119.0 17.6 267 302-608 11-278 (1088)
58 PF13041 PPR_2: PPR repeat fam 99.2 3.6E-11 7.8E-16 84.5 6.7 50 380-429 1-50 (50)
59 COG2956 Predicted N-acetylgluc 99.2 9.6E-09 2.1E-13 97.1 24.5 285 265-557 50-356 (389)
60 KOG1840 Kinesin light chain [C 99.2 3.9E-09 8.5E-14 110.3 23.6 191 356-546 246-477 (508)
61 COG3071 HemY Uncharacterized e 99.1 1.2E-07 2.7E-12 92.5 29.4 279 201-513 97-389 (400)
62 KOG1174 Anaphase-promoting com 99.1 5.1E-07 1.1E-11 88.2 32.6 266 248-519 230-505 (564)
63 KOG1173 Anaphase-promoting com 99.1 3.2E-07 6.9E-12 93.4 32.4 275 249-527 243-531 (611)
64 PRK12370 invasion protein regu 99.1 1.3E-08 2.9E-13 111.5 24.8 241 296-549 276-536 (553)
65 KOG4162 Predicted calmodulin-b 99.1 7.9E-07 1.7E-11 93.8 34.8 389 152-547 318-782 (799)
66 PRK11189 lipoprotein NlpI; Pro 99.1 1.3E-08 2.8E-13 102.1 20.4 189 352-549 65-266 (296)
67 TIGR02521 type_IV_pilW type IV 99.1 4.1E-08 8.9E-13 95.1 23.5 197 281-515 31-233 (234)
68 KOG1129 TPR repeat-containing 99.1 6.2E-09 1.3E-13 98.2 16.1 230 285-549 227-459 (478)
69 KOG2047 mRNA splicing factor [ 99.1 3.5E-06 7.6E-11 87.0 36.9 452 69-546 89-613 (835)
70 COG3063 PilF Tfp pilus assembl 99.1 1.5E-08 3.3E-13 91.5 17.7 162 384-550 37-204 (250)
71 KOG3785 Uncharacterized conser 99.1 2.3E-06 5.1E-11 82.0 33.1 187 357-548 291-490 (557)
72 PRK12370 invasion protein regu 99.0 3.1E-08 6.8E-13 108.6 23.5 210 330-547 275-501 (553)
73 KOG0985 Vesicle coat protein c 99.0 2.5E-06 5.4E-11 92.0 36.0 459 56-546 609-1247(1666)
74 KOG0547 Translocase of outer m 99.0 7.4E-07 1.6E-11 89.1 29.5 216 293-515 338-567 (606)
75 KOG3616 Selective LIM binding 99.0 3.9E-06 8.4E-11 87.6 35.0 239 288-547 739-1023(1636)
76 PRK11189 lipoprotein NlpI; Pro 99.0 3E-07 6.6E-12 92.3 25.5 225 296-528 41-280 (296)
77 KOG1840 Kinesin light chain [C 98.9 1.1E-07 2.3E-12 99.7 21.6 232 251-513 200-478 (508)
78 KOG4162 Predicted calmodulin-b 98.9 9.6E-07 2.1E-11 93.2 27.1 437 48-520 318-789 (799)
79 KOG3785 Uncharacterized conser 98.9 1.7E-06 3.7E-11 82.9 26.3 370 163-545 63-454 (557)
80 KOG1127 TPR repeat-containing 98.9 1.5E-06 3.3E-11 93.8 28.8 504 35-546 473-1102(1238)
81 KOG1156 N-terminal acetyltrans 98.9 1.4E-05 3.1E-10 82.9 34.7 179 98-278 52-247 (700)
82 KOG2376 Signal recognition par 98.9 1.9E-05 4.2E-10 81.1 34.5 128 419-548 341-487 (652)
83 KOG3617 WD40 and TPR repeat-co 98.9 6.4E-06 1.4E-10 87.2 31.1 397 51-502 724-1188(1416)
84 KOG1125 TPR repeat-containing 98.8 8E-08 1.7E-12 98.1 16.0 218 327-547 296-526 (579)
85 KOG1129 TPR repeat-containing 98.8 1.9E-07 4.2E-12 88.4 17.1 222 254-480 227-456 (478)
86 PRK04841 transcriptional regul 98.8 0.00013 2.9E-09 86.1 44.9 261 289-549 460-761 (903)
87 COG3063 PilF Tfp pilus assembl 98.8 1.3E-06 2.9E-11 79.2 20.8 190 326-519 45-241 (250)
88 KOG1174 Anaphase-promoting com 98.8 9.2E-06 2E-10 79.7 27.6 256 153-410 228-499 (564)
89 PF04733 Coatomer_E: Coatomer 98.8 2.4E-07 5.2E-12 91.6 16.6 81 467-547 181-264 (290)
90 PF12569 NARP1: NMDA receptor- 98.8 5.4E-06 1.2E-10 88.2 27.5 124 420-546 197-332 (517)
91 KOG0624 dsRNA-activated protei 98.7 1.8E-05 3.9E-10 75.8 26.2 307 192-521 42-377 (504)
92 PF04733 Coatomer_E: Coatomer 98.7 1.1E-06 2.4E-11 86.9 18.7 226 283-519 37-270 (290)
93 KOG3616 Selective LIM binding 98.7 7E-05 1.5E-09 78.5 31.8 343 166-543 741-1129(1636)
94 cd05804 StaR_like StaR_like; a 98.7 1.8E-05 4E-10 82.3 28.7 257 288-549 50-337 (355)
95 KOG1156 N-terminal acetyltrans 98.7 0.00024 5.2E-09 74.2 34.9 454 26-511 13-508 (700)
96 KOG0548 Molecular co-chaperone 98.7 4.8E-05 1E-09 77.6 29.4 414 68-531 15-472 (539)
97 PF12569 NARP1: NMDA receptor- 98.7 1.9E-05 4.2E-10 84.0 28.2 125 384-513 196-333 (517)
98 KOG0548 Molecular co-chaperone 98.7 1.6E-05 3.5E-10 80.9 25.6 216 319-548 227-455 (539)
99 KOG1127 TPR repeat-containing 98.7 1.6E-05 3.5E-10 86.2 26.5 439 89-545 494-993 (1238)
100 KOG3617 WD40 and TPR repeat-co 98.6 0.00067 1.5E-08 72.5 37.0 199 52-273 756-990 (1416)
101 KOG0985 Vesicle coat protein c 98.6 0.0016 3.5E-08 71.2 40.5 209 171-394 1089-1325(1666)
102 TIGR03302 OM_YfiO outer membra 98.6 4.6E-06 1E-10 81.1 18.8 179 350-548 32-232 (235)
103 KOG0624 dsRNA-activated protei 98.6 4.8E-05 1E-09 73.0 24.3 307 156-480 37-368 (504)
104 PF12854 PPR_1: PPR repeat 98.6 8.5E-08 1.8E-12 60.4 4.1 33 152-184 2-34 (34)
105 KOG4340 Uncharacterized conser 98.6 6.4E-05 1.4E-09 70.8 24.5 298 231-547 124-442 (459)
106 KOG4340 Uncharacterized conser 98.5 3E-05 6.5E-10 72.9 20.8 300 222-544 13-335 (459)
107 cd05804 StaR_like StaR_like; a 98.5 0.00031 6.7E-09 73.1 31.5 193 89-308 8-213 (355)
108 PRK15359 type III secretion sy 98.5 3.6E-06 7.8E-11 74.3 14.1 121 403-530 14-137 (144)
109 KOG1070 rRNA processing protei 98.5 1.4E-05 3E-10 89.6 20.7 201 348-552 1455-1667(1710)
110 PRK10370 formate-dependent nit 98.5 8.6E-06 1.9E-10 76.1 16.5 118 430-549 52-174 (198)
111 PF12854 PPR_1: PPR repeat 98.4 3.3E-07 7.2E-12 57.7 4.4 32 448-479 2-33 (34)
112 KOG1914 mRNA cleavage and poly 98.4 0.0012 2.6E-08 67.6 31.6 143 333-479 348-498 (656)
113 PRK04841 transcriptional regul 98.4 0.00059 1.3E-08 80.7 34.9 312 133-444 385-758 (903)
114 PRK15359 type III secretion sy 98.4 4.8E-06 1.1E-10 73.5 11.8 107 438-549 14-122 (144)
115 PRK15363 pathogenicity island 98.4 9.8E-06 2.1E-10 70.3 12.7 118 453-593 35-154 (157)
116 PRK15179 Vi polysaccharide bio 98.3 3.6E-05 7.8E-10 85.1 20.3 189 317-525 28-228 (694)
117 KOG1128 Uncharacterized conser 98.3 1.1E-05 2.4E-10 84.9 15.0 190 346-550 393-584 (777)
118 COG5010 TadD Flp pilus assembl 98.3 3.1E-05 6.7E-10 72.1 16.2 135 413-549 62-198 (257)
119 TIGR03302 OM_YfiO outer membra 98.3 3.6E-05 7.9E-10 74.8 17.4 181 315-516 32-234 (235)
120 PLN02789 farnesyltranstransfer 98.3 0.00012 2.6E-09 73.5 21.2 176 366-545 87-299 (320)
121 PRK10370 formate-dependent nit 98.3 8.5E-05 1.8E-09 69.4 18.4 154 358-523 23-182 (198)
122 KOG1125 TPR repeat-containing 98.3 5.9E-05 1.3E-09 77.6 18.1 83 259-343 294-380 (579)
123 PRK15179 Vi polysaccharide bio 98.2 0.00015 3.3E-09 80.3 21.8 196 280-493 27-230 (694)
124 KOG2053 Mitochondrial inherita 98.2 0.016 3.5E-07 63.3 36.7 68 487-554 438-508 (932)
125 COG4783 Putative Zn-dependent 98.2 0.00053 1.1E-08 69.6 22.8 177 365-546 251-435 (484)
126 KOG1128 Uncharacterized conser 98.1 9.1E-05 2E-09 78.3 16.7 211 251-479 399-613 (777)
127 KOG1070 rRNA processing protei 98.1 0.00026 5.6E-09 79.9 20.8 215 220-435 1459-1689(1710)
128 COG5010 TadD Flp pilus assembl 98.1 0.00021 4.5E-09 66.8 16.9 117 423-541 106-224 (257)
129 TIGR02552 LcrH_SycD type III s 98.1 3.6E-05 7.7E-10 67.4 11.7 100 449-548 12-114 (135)
130 TIGR00756 PPR pentatricopeptid 98.1 6.6E-06 1.4E-10 52.5 4.6 35 383-417 1-35 (35)
131 PRK14720 transcript cleavage f 98.1 0.00066 1.4E-08 76.1 22.9 44 487-530 225-268 (906)
132 TIGR00756 PPR pentatricopeptid 98.1 6.1E-06 1.3E-10 52.7 4.3 35 88-122 1-35 (35)
133 COG4783 Putative Zn-dependent 98.0 0.00058 1.3E-08 69.4 19.3 147 381-549 305-455 (484)
134 PLN02789 farnesyltranstransfer 97.9 0.0014 3E-08 66.0 20.3 182 361-547 47-249 (320)
135 KOG3081 Vesicle coat complex C 97.9 0.0077 1.7E-07 56.5 23.2 147 391-547 117-270 (299)
136 PF13812 PPR_3: Pentatricopept 97.9 1.5E-05 3.3E-10 50.5 4.1 33 88-120 2-34 (34)
137 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00031 6.8E-09 72.0 15.7 126 353-483 171-298 (395)
138 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.0002 4.4E-09 73.4 14.2 122 420-546 172-295 (395)
139 PF13812 PPR_3: Pentatricopept 97.9 2.1E-05 4.6E-10 49.8 4.5 33 383-415 2-34 (34)
140 TIGR02552 LcrH_SycD type III s 97.9 0.00041 8.9E-09 60.6 13.9 113 404-520 5-120 (135)
141 KOG3060 Uncharacterized conser 97.8 0.0041 8.9E-08 57.8 19.2 165 356-523 57-229 (289)
142 KOG3081 Vesicle coat complex C 97.8 0.0025 5.5E-08 59.6 17.5 153 390-549 80-237 (299)
143 PF13414 TPR_11: TPR repeat; P 97.7 8.9E-05 1.9E-09 56.0 6.1 64 484-547 2-66 (69)
144 cd00189 TPR Tetratricopeptide 97.7 0.00032 6.8E-09 56.4 9.8 92 456-547 3-96 (100)
145 KOG3060 Uncharacterized conser 97.7 0.0041 9E-08 57.8 17.4 161 385-549 55-221 (289)
146 PF09976 TPR_21: Tetratricopep 97.7 0.0012 2.5E-08 58.5 13.7 121 385-509 15-142 (145)
147 PRK14720 transcript cleavage f 97.7 0.01 2.2E-07 66.9 23.5 79 319-410 119-197 (906)
148 PF09976 TPR_21: Tetratricopep 97.6 0.0027 5.8E-08 56.2 15.4 114 430-544 24-143 (145)
149 PF01535 PPR: PPR repeat; Int 97.6 6.5E-05 1.4E-09 46.3 3.6 31 383-413 1-31 (31)
150 PF12895 Apc3: Anaphase-promot 97.6 7.2E-05 1.6E-09 59.1 4.7 77 467-544 3-83 (84)
151 PF01535 PPR: PPR repeat; Int 97.6 6.3E-05 1.4E-09 46.4 3.4 31 88-118 1-31 (31)
152 PF04840 Vps16_C: Vps16, C-ter 97.6 0.083 1.8E-06 53.1 27.2 106 357-479 183-288 (319)
153 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0012 2.6E-08 56.0 12.4 98 423-520 8-111 (119)
154 PLN03088 SGT1, suppressor of 97.6 0.00091 2E-08 68.9 13.4 98 425-525 10-110 (356)
155 KOG0553 TPR repeat-containing 97.6 0.0012 2.5E-08 63.1 12.7 102 427-531 91-195 (304)
156 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0011 2.3E-08 56.3 11.5 96 454-549 3-106 (119)
157 PF13432 TPR_16: Tetratricopep 97.5 0.0002 4.4E-09 53.3 5.8 57 491-547 3-59 (65)
158 KOG0550 Molecular chaperone (D 97.5 0.0019 4.2E-08 64.0 13.8 265 256-548 55-350 (486)
159 KOG2053 Mitochondrial inherita 97.5 0.22 4.7E-06 54.9 36.0 188 68-258 56-265 (932)
160 PRK10153 DNA-binding transcrip 97.5 0.0039 8.4E-08 67.2 17.5 61 485-546 420-480 (517)
161 KOG2041 WD40 repeat protein [G 97.4 0.25 5.5E-06 52.7 29.1 117 154-275 689-821 (1189)
162 PRK02603 photosystem I assembl 97.4 0.0016 3.5E-08 59.6 11.1 81 454-534 36-121 (172)
163 CHL00033 ycf3 photosystem I as 97.4 0.0015 3.2E-08 59.6 10.5 93 453-545 35-139 (168)
164 PF14938 SNAP: Soluble NSF att 97.4 0.028 6E-07 56.1 20.4 124 357-480 120-264 (282)
165 PLN03088 SGT1, suppressor of 97.4 0.0033 7.1E-08 64.8 13.9 100 388-492 8-110 (356)
166 KOG0553 TPR repeat-containing 97.4 0.00055 1.2E-08 65.3 7.3 88 460-547 88-177 (304)
167 PRK02603 photosystem I assembl 97.3 0.0066 1.4E-07 55.5 14.3 130 381-534 34-166 (172)
168 PRK15331 chaperone protein Sic 97.3 0.0051 1.1E-07 53.9 12.1 89 459-547 43-133 (165)
169 cd00189 TPR Tetratricopeptide 97.3 0.003 6.5E-08 50.4 10.4 89 385-477 3-92 (100)
170 PF14559 TPR_19: Tetratricopep 97.3 0.00034 7.3E-09 52.6 4.1 52 496-547 2-53 (68)
171 PF13432 TPR_16: Tetratricopep 97.3 0.0012 2.6E-08 49.0 6.9 61 459-519 3-65 (65)
172 CHL00033 ycf3 photosystem I as 97.2 0.016 3.5E-07 52.7 15.7 80 382-464 35-117 (168)
173 KOG1130 Predicted G-alpha GTPa 97.2 0.0014 3.1E-08 64.7 8.6 256 291-546 27-342 (639)
174 KOG1914 mRNA cleavage and poly 97.2 0.39 8.4E-06 50.0 34.2 437 84-545 17-536 (656)
175 KOG2041 WD40 repeat protein [G 97.2 0.42 9.1E-06 51.1 26.2 199 119-339 689-901 (1189)
176 PF13431 TPR_17: Tetratricopep 97.2 0.00027 5.9E-09 44.4 2.0 32 508-539 2-33 (34)
177 PF13371 TPR_9: Tetratricopept 97.2 0.0011 2.3E-08 50.7 5.8 57 493-549 3-59 (73)
178 KOG2796 Uncharacterized conser 97.1 0.097 2.1E-06 49.2 19.1 230 189-421 70-323 (366)
179 PRK15363 pathogenicity island 97.1 0.0088 1.9E-07 52.2 11.7 93 381-478 34-128 (157)
180 COG3898 Uncharacterized membra 97.1 0.34 7.3E-06 48.3 27.5 242 293-548 132-392 (531)
181 PF12895 Apc3: Anaphase-promot 97.1 0.0012 2.6E-08 52.0 6.0 80 395-478 2-83 (84)
182 PRK10153 DNA-binding transcrip 97.1 0.013 2.9E-07 63.1 15.7 141 378-520 333-488 (517)
183 COG4235 Cytochrome c biogenesi 97.1 0.0067 1.4E-07 58.4 11.8 102 450-551 153-259 (287)
184 PF14938 SNAP: Soluble NSF att 97.1 0.027 5.9E-07 56.1 16.9 115 388-517 100-228 (282)
185 PF05843 Suf: Suppressor of fo 97.1 0.018 4E-07 57.1 15.2 134 383-519 2-141 (280)
186 KOG1538 Uncharacterized conser 97.1 0.081 1.8E-06 55.7 19.6 97 357-485 709-806 (1081)
187 COG4700 Uncharacterized protei 97.0 0.091 2E-06 46.7 17.0 132 413-547 85-221 (251)
188 PF04840 Vps16_C: Vps16, C-ter 97.0 0.45 9.7E-06 47.9 28.8 106 252-373 179-284 (319)
189 PF07079 DUF1347: Protein of u 97.0 0.48 1E-05 48.3 29.3 443 27-490 15-530 (549)
190 COG3898 Uncharacterized membra 97.0 0.43 9.3E-06 47.6 26.4 270 68-345 97-392 (531)
191 PF08579 RPM2: Mitochondrial r 97.0 0.0086 1.9E-07 48.5 9.4 78 92-169 30-116 (120)
192 PF13281 DUF4071: Domain of un 97.0 0.12 2.6E-06 52.5 19.7 160 356-518 146-338 (374)
193 PRK10866 outer membrane biogen 96.9 0.12 2.7E-06 49.9 19.2 56 256-311 38-99 (243)
194 PF14559 TPR_19: Tetratricopep 96.9 0.0017 3.8E-08 48.7 5.2 54 466-519 4-59 (68)
195 PRK10866 outer membrane biogen 96.9 0.083 1.8E-06 51.1 17.9 170 358-546 39-239 (243)
196 PF08579 RPM2: Mitochondrial r 96.9 0.012 2.7E-07 47.6 9.9 81 384-465 27-116 (120)
197 PF06239 ECSIT: Evolutionarily 96.9 0.0092 2E-07 54.6 10.2 97 371-468 34-153 (228)
198 PF10037 MRP-S27: Mitochondria 96.8 0.013 2.8E-07 60.7 12.0 69 92-160 108-176 (429)
199 PF13414 TPR_11: TPR repeat; P 96.8 0.0032 7E-08 47.4 5.6 64 453-516 3-69 (69)
200 PF05843 Suf: Suppressor of fo 96.8 0.045 9.8E-07 54.3 15.1 126 283-410 3-135 (280)
201 PLN03098 LPA1 LOW PSII ACCUMUL 96.8 0.0053 1.1E-07 62.8 8.4 62 453-514 75-141 (453)
202 KOG1538 Uncharacterized conser 96.8 0.11 2.3E-06 54.9 17.7 55 125-182 601-657 (1081)
203 KOG1130 Predicted G-alpha GTPa 96.7 0.053 1.1E-06 54.1 14.7 130 384-513 197-343 (639)
204 KOG2280 Vacuolar assembly/sort 96.7 1.2 2.6E-05 48.4 30.1 82 163-244 443-532 (829)
205 COG4700 Uncharacterized protei 96.7 0.18 3.9E-06 44.9 16.0 125 348-477 86-217 (251)
206 PF10037 MRP-S27: Mitochondria 96.7 0.026 5.6E-07 58.5 12.7 116 314-429 64-185 (429)
207 PRK10803 tol-pal system protei 96.6 0.013 2.7E-07 57.2 9.9 93 455-547 145-245 (263)
208 PF12688 TPR_5: Tetratrico pep 96.6 0.027 5.8E-07 47.4 10.5 85 460-544 8-100 (120)
209 PF13428 TPR_14: Tetratricopep 96.6 0.0036 7.8E-08 42.1 4.3 42 486-527 2-43 (44)
210 PF12688 TPR_5: Tetratrico pep 96.5 0.053 1.2E-06 45.6 11.6 59 287-345 7-67 (120)
211 PF06239 ECSIT: Evolutionarily 96.5 0.016 3.4E-07 53.1 8.7 101 84-184 44-166 (228)
212 PF03704 BTAD: Bacterial trans 96.4 0.041 8.9E-07 48.7 11.0 68 487-554 64-136 (146)
213 PF07079 DUF1347: Protein of u 96.4 1.4 3E-05 45.2 32.4 72 473-545 444-521 (549)
214 KOG0543 FKBP-type peptidyl-pro 96.3 0.031 6.8E-07 56.0 10.2 84 485-594 257-340 (397)
215 KOG0550 Molecular chaperone (D 96.3 0.83 1.8E-05 46.1 19.7 113 364-479 216-347 (486)
216 PF13371 TPR_9: Tetratricopept 96.3 0.017 3.7E-07 43.9 6.7 63 461-523 3-67 (73)
217 PRK10803 tol-pal system protei 96.3 0.047 1E-06 53.3 11.3 101 419-519 145-251 (263)
218 KOG2280 Vacuolar assembly/sort 96.2 2.4 5.1E-05 46.3 25.8 114 414-543 681-794 (829)
219 KOG2796 Uncharacterized conser 96.1 0.42 9.1E-06 45.1 15.7 132 385-517 180-318 (366)
220 PF13424 TPR_12: Tetratricopep 96.1 0.0097 2.1E-07 46.0 4.6 60 487-546 7-73 (78)
221 PF13424 TPR_12: Tetratricopep 95.8 0.015 3.2E-07 45.0 4.5 59 455-513 7-74 (78)
222 PF09205 DUF1955: Domain of un 95.8 0.82 1.8E-05 38.4 14.4 138 395-551 15-152 (161)
223 COG0457 NrfG FOG: TPR repeat [ 95.7 1.8 4E-05 40.8 26.1 193 351-547 59-264 (291)
224 PF13525 YfiO: Outer membrane 95.7 0.85 1.8E-05 42.8 16.8 160 359-539 13-198 (203)
225 KOG1941 Acetylcholine receptor 95.6 0.3 6.5E-06 48.1 13.1 163 383-545 84-272 (518)
226 COG5107 RNA14 Pre-mRNA 3'-end 95.3 4 8.7E-05 41.9 29.9 134 381-518 396-535 (660)
227 COG4105 ComL DNA uptake lipopr 95.1 2.7 5.8E-05 40.1 17.5 167 362-548 45-233 (254)
228 PF12921 ATP13: Mitochondrial 95.1 0.28 6E-06 41.8 10.2 48 413-460 48-95 (126)
229 PF13525 YfiO: Outer membrane 95.1 0.62 1.3E-05 43.8 13.6 51 423-473 147-198 (203)
230 KOG4555 TPR repeat-containing 95.1 0.22 4.7E-06 41.6 8.9 90 461-550 51-146 (175)
231 PLN03098 LPA1 LOW PSII ACCUMUL 95.1 0.13 2.8E-06 53.0 9.4 60 417-479 75-138 (453)
232 KOG1585 Protein required for f 95.1 2.3 5.1E-05 39.9 16.4 88 454-542 151-250 (308)
233 KOG1258 mRNA processing protei 95.0 6.3 0.00014 42.2 27.3 419 76-534 33-490 (577)
234 PF12921 ATP13: Mitochondrial 94.8 0.32 6.9E-06 41.4 9.8 51 448-498 47-101 (126)
235 KOG3941 Intermediate in Toll s 94.8 0.23 5.1E-06 47.2 9.4 100 369-469 52-174 (406)
236 COG4235 Cytochrome c biogenesi 94.7 1.2 2.6E-05 43.3 14.3 101 417-519 156-261 (287)
237 COG1729 Uncharacterized protei 94.7 0.22 4.8E-06 47.6 9.2 57 491-547 184-243 (262)
238 PF13512 TPR_18: Tetratricopep 94.6 0.7 1.5E-05 39.8 11.2 60 461-520 18-82 (142)
239 smart00299 CLH Clathrin heavy 94.6 2.6 5.7E-05 36.7 15.6 85 125-213 10-94 (140)
240 KOG0543 FKBP-type peptidyl-pro 94.6 0.33 7.2E-06 48.9 10.6 137 389-547 215-354 (397)
241 PF00515 TPR_1: Tetratricopept 94.5 0.073 1.6E-06 33.2 3.9 32 486-517 2-33 (34)
242 PF04053 Coatomer_WDAD: Coatom 94.5 1.9 4.2E-05 45.6 16.7 130 221-375 297-426 (443)
243 COG0457 NrfG FOG: TPR repeat [ 94.4 4.5 9.7E-05 38.0 25.0 197 317-517 60-268 (291)
244 PRK11906 transcriptional regul 94.4 0.66 1.4E-05 48.1 12.6 63 484-546 337-399 (458)
245 PF03704 BTAD: Bacterial trans 94.4 0.4 8.6E-06 42.3 9.9 70 385-455 65-138 (146)
246 PF04184 ST7: ST7 protein; In 94.3 3.4 7.4E-05 43.1 17.3 97 423-519 265-380 (539)
247 COG5107 RNA14 Pre-mRNA 3'-end 94.3 7.4 0.00016 40.0 26.7 427 50-496 39-546 (660)
248 KOG1920 IkappaB kinase complex 94.3 13 0.00028 43.2 22.9 26 90-115 793-820 (1265)
249 KOG2066 Vacuolar assembly/sort 94.2 11 0.00023 41.7 26.6 100 130-231 364-467 (846)
250 COG3118 Thioredoxin domain-con 94.1 2.4 5.2E-05 41.2 14.8 120 426-548 143-265 (304)
251 smart00299 CLH Clathrin heavy 94.1 2.8 6.1E-05 36.5 14.7 66 418-496 70-136 (140)
252 PF07719 TPR_2: Tetratricopept 94.1 0.13 2.9E-06 31.8 4.6 33 486-518 2-34 (34)
253 PF13281 DUF4071: Domain of un 94.0 1.9 4.1E-05 44.0 14.8 32 100-131 195-226 (374)
254 COG3118 Thioredoxin domain-con 93.9 6.5 0.00014 38.3 17.2 147 389-538 141-291 (304)
255 KOG2114 Vacuolar assembly/sort 93.7 14 0.0003 41.2 29.9 142 60-212 341-487 (933)
256 PRK15331 chaperone protein Sic 93.7 2 4.3E-05 38.1 12.4 86 390-479 45-131 (165)
257 PRK11906 transcriptional regul 93.7 4.9 0.00011 41.9 17.1 157 383-543 252-431 (458)
258 COG4105 ComL DNA uptake lipopr 93.6 5.5 0.00012 38.0 15.9 171 260-444 44-231 (254)
259 KOG3941 Intermediate in Toll s 93.3 0.42 9.2E-06 45.5 8.1 114 71-184 50-186 (406)
260 PF08631 SPO22: Meiosis protei 93.2 9.5 0.00021 37.8 20.7 96 283-379 38-149 (278)
261 PF10300 DUF3808: Protein of u 93.2 3.6 7.8E-05 44.2 16.3 115 430-547 246-375 (468)
262 KOG1920 IkappaB kinase complex 93.1 17 0.00037 42.3 21.3 122 365-507 894-1021(1265)
263 PF04053 Coatomer_WDAD: Coatom 93.1 1.3 2.9E-05 46.8 12.5 132 391-549 270-403 (443)
264 KOG2610 Uncharacterized conser 93.1 2.7 5.9E-05 41.3 13.3 156 395-553 116-281 (491)
265 KOG4555 TPR repeat-containing 92.9 0.89 1.9E-05 38.1 8.4 86 428-515 54-145 (175)
266 PF13512 TPR_18: Tetratricopep 92.7 3 6.6E-05 36.0 11.9 117 387-519 15-133 (142)
267 COG1729 Uncharacterized protei 92.6 2.4 5.3E-05 40.7 12.3 102 419-521 144-251 (262)
268 PF04184 ST7: ST7 protein; In 92.2 2.9 6.2E-05 43.7 12.9 145 393-551 179-327 (539)
269 KOG4234 TPR repeat-containing 92.1 0.46 1E-05 42.9 6.3 88 462-549 104-198 (271)
270 PF07035 Mic1: Colon cancer-as 91.7 5.2 0.00011 35.8 12.6 123 108-237 15-138 (167)
271 PF10300 DUF3808: Protein of u 91.6 2.8 6.1E-05 45.0 13.1 158 221-410 190-375 (468)
272 KOG2114 Vacuolar assembly/sort 91.5 23 0.00049 39.7 19.3 138 68-216 381-518 (933)
273 COG4785 NlpI Lipoprotein NlpI, 91.3 9.8 0.00021 35.2 13.9 179 365-550 79-268 (297)
274 KOG1258 mRNA processing protei 91.2 24 0.00053 37.9 29.7 137 54-193 46-187 (577)
275 PRK09687 putative lyase; Provi 91.2 17 0.00037 36.0 26.1 216 84-309 34-262 (280)
276 PF13181 TPR_8: Tetratricopept 90.6 0.45 9.7E-06 29.5 3.7 31 487-517 3-33 (34)
277 PF10345 Cohesin_load: Cohesin 90.2 36 0.00078 38.2 24.9 152 30-184 72-252 (608)
278 PF09613 HrpB1_HrpK: Bacterial 90.1 11 0.00024 33.3 12.9 89 425-516 18-108 (160)
279 PF00637 Clathrin: Region in C 89.9 0.6 1.3E-05 41.0 5.2 128 128-265 13-140 (143)
280 PF13176 TPR_7: Tetratricopept 89.8 0.52 1.1E-05 29.8 3.4 26 521-546 1-26 (36)
281 KOG1464 COP9 signalosome, subu 89.7 15 0.00033 35.1 14.1 210 284-498 68-317 (440)
282 KOG2610 Uncharacterized conser 89.5 3.6 7.8E-05 40.5 10.1 116 429-546 115-236 (491)
283 PF13176 TPR_7: Tetratricopept 89.0 0.71 1.5E-05 29.2 3.6 27 487-513 1-27 (36)
284 KOG1585 Protein required for f 88.7 14 0.00031 34.9 12.9 22 254-275 95-116 (308)
285 COG3629 DnrI DNA-binding trans 88.3 3.1 6.6E-05 40.7 9.0 75 351-425 153-235 (280)
286 COG3629 DnrI DNA-binding trans 88.3 2.3 5E-05 41.5 8.1 61 487-547 155-215 (280)
287 PF13428 TPR_14: Tetratricopep 88.1 1.6 3.5E-05 29.0 5.1 32 384-417 3-34 (44)
288 KOG0890 Protein kinase of the 87.9 90 0.0019 39.7 31.8 308 225-549 1389-1732(2382)
289 KOG4648 Uncharacterized conser 87.8 0.97 2.1E-05 44.3 5.2 110 423-539 103-215 (536)
290 KOG2396 HAT (Half-A-TPR) repea 87.8 40 0.00086 35.6 29.0 102 413-517 455-563 (568)
291 PF09613 HrpB1_HrpK: Bacterial 87.8 2.9 6.3E-05 36.8 7.7 53 496-548 21-73 (160)
292 PRK09687 putative lyase; Provi 87.7 31 0.00067 34.2 26.2 61 451-516 204-265 (280)
293 PF07035 Mic1: Colon cancer-as 87.4 20 0.00043 32.2 12.8 46 143-188 15-60 (167)
294 PF02259 FAT: FAT domain; Int 87.4 37 0.00081 34.8 20.7 147 381-530 145-303 (352)
295 PF14853 Fis1_TPR_C: Fis1 C-te 87.3 3.4 7.4E-05 28.9 6.4 51 521-597 3-53 (53)
296 PF02259 FAT: FAT domain; Int 87.3 27 0.00058 35.9 16.3 69 483-551 144-216 (352)
297 KOG1941 Acetylcholine receptor 87.0 32 0.00069 34.6 14.9 93 282-374 84-185 (518)
298 PF00515 TPR_1: Tetratricopept 87.0 1.4 3.1E-05 27.1 4.1 28 383-410 2-29 (34)
299 KOG0276 Vesicle coat complex C 86.8 11 0.00024 40.2 12.4 162 187-376 580-746 (794)
300 TIGR02561 HrpB1_HrpK type III 86.8 3.2 6.8E-05 36.0 7.1 53 497-549 22-74 (153)
301 PF09205 DUF1955: Domain of un 86.4 19 0.00042 30.5 12.6 57 387-444 91-147 (161)
302 PF10602 RPN7: 26S proteasome 85.9 17 0.00037 33.1 12.2 94 384-479 38-139 (177)
303 COG4649 Uncharacterized protei 85.5 14 0.0003 33.0 10.4 121 392-513 68-195 (221)
304 KOG4648 Uncharacterized conser 85.4 2.8 6E-05 41.3 6.9 79 389-478 104-183 (536)
305 PF13170 DUF4003: Protein of u 84.7 20 0.00044 35.8 12.9 63 399-462 160-226 (297)
306 COG4785 NlpI Lipoprotein NlpI, 84.7 34 0.00074 31.8 12.9 125 68-199 78-209 (297)
307 PF13431 TPR_17: Tetratricopep 84.5 1.6 3.5E-05 27.2 3.3 31 146-177 3-33 (34)
308 PF14853 Fis1_TPR_C: Fis1 C-te 84.4 2.5 5.3E-05 29.6 4.5 31 490-520 6-36 (53)
309 TIGR02508 type_III_yscG type I 84.3 12 0.00026 29.9 8.6 60 258-320 47-106 (115)
310 TIGR02508 type_III_yscG type I 84.2 15 0.00032 29.4 9.0 61 359-422 47-107 (115)
311 PF10602 RPN7: 26S proteasome 84.2 11 0.00024 34.3 10.1 94 89-184 38-140 (177)
312 PF07719 TPR_2: Tetratricopept 83.9 2.4 5.2E-05 25.9 4.1 27 384-410 3-29 (34)
313 PRK11619 lytic murein transgly 83.8 82 0.0018 35.5 32.9 116 395-513 254-374 (644)
314 PF10345 Cohesin_load: Cohesin 83.7 81 0.0018 35.4 35.0 58 489-546 538-604 (608)
315 PF13374 TPR_10: Tetratricopep 82.7 2.7 5.9E-05 27.2 4.2 25 488-512 5-29 (42)
316 KOG1586 Protein required for f 82.6 38 0.00082 32.0 12.5 23 496-518 165-187 (288)
317 PF07721 TPR_4: Tetratricopept 82.3 1.5 3.3E-05 25.3 2.4 24 520-543 2-25 (26)
318 PF02284 COX5A: Cytochrome c o 82.1 10 0.00022 30.4 7.5 60 400-461 28-87 (108)
319 KOG4570 Uncharacterized conser 81.8 7.5 0.00016 38.0 8.0 101 48-152 59-165 (418)
320 TIGR02270 conserved hypothetic 81.7 74 0.0016 33.5 23.9 172 92-273 43-214 (410)
321 PRK13800 putative oxidoreducta 81.7 1.2E+02 0.0026 35.9 25.3 256 175-445 622-880 (897)
322 cd00923 Cyt_c_Oxidase_Va Cytoc 80.8 11 0.00024 29.9 7.3 63 397-461 22-84 (103)
323 PRK13800 putative oxidoreducta 80.4 1.3E+02 0.0029 35.6 25.1 49 451-499 787-835 (897)
324 COG2976 Uncharacterized protei 80.2 48 0.001 30.4 14.0 114 400-517 70-191 (207)
325 PF13374 TPR_10: Tetratricopep 80.1 2.7 5.8E-05 27.2 3.5 28 520-547 3-30 (42)
326 KOG1550 Extracellular protein 79.8 1E+02 0.0023 34.0 22.4 77 468-547 454-537 (552)
327 smart00028 TPR Tetratricopepti 79.5 3.2 6.9E-05 24.3 3.5 29 488-516 4-32 (34)
328 PF13174 TPR_6: Tetratricopept 79.4 3.3 7.2E-05 25.0 3.5 27 491-517 6-32 (33)
329 COG3947 Response regulator con 79.4 66 0.0014 31.5 16.0 57 490-546 284-340 (361)
330 PF13170 DUF4003: Protein of u 79.1 73 0.0016 31.9 16.2 126 297-424 78-224 (297)
331 KOG3364 Membrane protein invol 79.1 16 0.00036 31.1 8.2 48 500-547 50-99 (149)
332 PF06552 TOM20_plant: Plant sp 78.8 13 0.00028 33.5 8.0 46 501-546 51-100 (186)
333 COG2909 MalT ATP-dependent tra 78.4 1.3E+02 0.0028 34.4 20.3 193 362-558 426-657 (894)
334 PRK12798 chemotaxis protein; R 78.3 89 0.0019 32.4 21.4 178 364-544 125-320 (421)
335 PF04097 Nic96: Nup93/Nic96; 78.3 1.2E+02 0.0026 34.0 24.6 67 91-158 115-188 (613)
336 PRK10941 hypothetical protein; 77.7 18 0.00038 35.5 9.5 62 487-548 183-244 (269)
337 KOG4279 Serine/threonine prote 77.4 44 0.00095 37.0 12.7 183 282-518 202-399 (1226)
338 PF04910 Tcf25: Transcriptiona 76.9 96 0.0021 32.1 15.4 64 484-547 99-167 (360)
339 KOG4570 Uncharacterized conser 76.8 23 0.00049 34.9 9.6 97 345-445 58-163 (418)
340 PF13174 TPR_6: Tetratricopept 76.5 2.8 6.1E-05 25.4 2.5 28 521-548 2-29 (33)
341 cd00923 Cyt_c_Oxidase_Va Cytoc 76.0 18 0.00038 28.8 7.1 60 104-165 24-84 (103)
342 PF13181 TPR_8: Tetratricopept 75.7 4.8 0.0001 24.6 3.5 27 384-410 3-29 (34)
343 PF06552 TOM20_plant: Plant sp 75.3 48 0.001 30.0 10.6 45 501-552 96-140 (186)
344 PF00637 Clathrin: Region in C 74.8 2.6 5.7E-05 36.8 2.8 25 87-111 42-66 (143)
345 PF11207 DUF2989: Protein of u 74.6 16 0.00035 33.6 7.7 70 470-539 123-198 (203)
346 PF09477 Type_III_YscG: Bacter 74.6 41 0.00088 27.4 8.9 87 331-421 21-107 (116)
347 TIGR02561 HrpB1_HrpK type III 74.3 49 0.0011 28.9 10.0 51 429-482 22-73 (153)
348 COG1747 Uncharacterized N-term 74.1 1.3E+02 0.0028 32.1 19.6 86 356-444 71-158 (711)
349 PRK09169 hypothetical protein; 72.8 2.9E+02 0.0062 35.6 38.3 426 120-545 160-692 (2316)
350 KOG0403 Neoplastic transformat 72.4 1.3E+02 0.0028 31.4 16.1 60 54-115 179-242 (645)
351 PF02284 COX5A: Cytochrome c o 71.9 19 0.00041 29.0 6.5 60 105-165 28-87 (108)
352 KOG3807 Predicted membrane pro 71.5 47 0.001 32.9 10.4 19 503-521 380-398 (556)
353 PF11207 DUF2989: Protein of u 70.6 37 0.00081 31.3 9.1 74 399-473 123-198 (203)
354 PF07721 TPR_4: Tetratricopept 70.0 8.7 0.00019 22.0 3.3 19 255-273 6-24 (26)
355 KOG2066 Vacuolar assembly/sort 69.9 2E+02 0.0042 32.5 24.3 19 355-373 651-669 (846)
356 PRK15180 Vi polysaccharide bio 69.5 62 0.0013 33.9 11.1 125 389-517 296-423 (831)
357 PF14561 TPR_20: Tetratricopep 69.4 11 0.00023 29.9 4.8 45 505-549 8-52 (90)
358 PF13934 ELYS: Nuclear pore co 69.1 1.1E+02 0.0023 29.2 12.6 106 385-499 79-186 (226)
359 COG4649 Uncharacterized protei 68.5 91 0.002 28.1 15.3 118 361-479 68-193 (221)
360 PF13929 mRNA_stabil: mRNA sta 67.9 59 0.0013 31.9 10.3 113 397-509 143-262 (292)
361 TIGR02270 conserved hypothetic 66.3 1.8E+02 0.0039 30.7 24.0 172 129-306 45-216 (410)
362 TIGR03504 FimV_Cterm FimV C-te 66.0 9.9 0.00022 25.3 3.3 27 523-549 3-29 (44)
363 COG2976 Uncharacterized protei 65.5 1.1E+02 0.0024 28.1 13.0 54 358-411 133-188 (207)
364 PRK11619 lytic murein transgly 65.1 2.4E+02 0.0053 31.8 38.1 365 155-554 127-511 (644)
365 PF11768 DUF3312: Protein of u 64.8 1E+02 0.0022 33.2 12.1 55 356-410 413-472 (545)
366 PF09670 Cas_Cas02710: CRISPR- 64.3 1.1E+02 0.0023 32.0 12.3 122 391-513 140-269 (379)
367 COG4455 ImpE Protein of avirul 64.2 19 0.00042 33.4 5.8 64 456-519 4-69 (273)
368 KOG0376 Serine-threonine phosp 63.9 11 0.00023 39.4 4.7 82 465-546 16-99 (476)
369 KOG0276 Vesicle coat complex C 63.3 56 0.0012 35.3 9.7 98 68-183 650-747 (794)
370 PF13929 mRNA_stabil: mRNA sta 62.9 1.2E+02 0.0027 29.8 11.4 121 90-213 134-263 (292)
371 COG1747 Uncharacterized N-term 62.6 2.2E+02 0.0048 30.4 19.0 94 280-378 65-158 (711)
372 KOG1550 Extracellular protein 62.5 2.5E+02 0.0054 31.1 17.3 82 468-551 343-429 (552)
373 KOG4642 Chaperone-dependent E3 62.3 25 0.00054 33.3 6.3 80 468-547 25-106 (284)
374 PF10579 Rapsyn_N: Rapsyn N-te 61.4 19 0.0004 27.5 4.4 47 429-475 18-65 (80)
375 KOG4507 Uncharacterized conser 60.9 28 0.0006 37.3 7.1 99 429-530 619-721 (886)
376 KOG1308 Hsp70-interacting prot 60.9 5.2 0.00011 39.7 1.8 65 488-552 151-215 (377)
377 PRK15180 Vi polysaccharide bio 60.1 76 0.0016 33.3 9.8 132 361-495 299-435 (831)
378 KOG1586 Protein required for f 58.9 1.7E+02 0.0036 27.9 13.3 89 431-519 128-229 (288)
379 KOG4234 TPR repeat-containing 58.6 1.1E+02 0.0024 28.2 9.5 59 460-518 141-201 (271)
380 cd08819 CARD_MDA5_2 Caspase ac 58.4 37 0.00081 26.5 5.6 36 169-205 48-83 (88)
381 cd08819 CARD_MDA5_2 Caspase ac 58.0 42 0.0009 26.2 5.8 38 262-300 48-85 (88)
382 KOG0551 Hsp90 co-chaperone CNS 57.0 44 0.00096 33.3 7.3 92 454-545 82-179 (390)
383 PF09477 Type_III_YscG: Bacter 56.8 1.1E+02 0.0024 25.1 9.6 79 136-217 20-98 (116)
384 KOG0890 Protein kinase of the 56.3 5.7E+02 0.012 33.2 23.1 144 193-340 1388-1542(2382)
385 KOG2471 TPR repeat-containing 54.7 2.2E+02 0.0047 30.3 12.0 307 135-464 30-380 (696)
386 PF14863 Alkyl_sulf_dimr: Alky 54.1 58 0.0013 28.3 7.0 64 469-535 57-120 (141)
387 KOG2422 Uncharacterized conser 54.0 2E+02 0.0043 31.3 11.8 54 493-546 350-405 (665)
388 KOG0545 Aryl-hydrocarbon recep 54.0 70 0.0015 30.5 7.7 55 493-547 238-292 (329)
389 PF11663 Toxin_YhaV: Toxin wit 54.0 17 0.00036 30.9 3.4 31 100-132 108-138 (140)
390 PF07163 Pex26: Pex26 protein; 53.9 1.4E+02 0.0031 29.1 10.0 87 389-478 90-183 (309)
391 PF10366 Vps39_1: Vacuolar sor 53.2 1.2E+02 0.0026 25.0 8.4 27 283-309 41-67 (108)
392 PF09986 DUF2225: Uncharacteri 52.7 65 0.0014 30.4 7.7 61 489-549 122-195 (214)
393 smart00386 HAT HAT (Half-A-TPR 52.3 26 0.00055 20.7 3.5 29 499-527 1-29 (33)
394 PHA02875 ankyrin repeat protei 51.9 3.1E+02 0.0067 28.8 17.7 19 164-182 72-90 (413)
395 PF10366 Vps39_1: Vacuolar sor 51.5 93 0.002 25.6 7.5 27 384-410 41-67 (108)
396 PF07163 Pex26: Pex26 protein; 51.2 1.3E+02 0.0028 29.5 9.1 20 288-307 90-109 (309)
397 PF10579 Rapsyn_N: Rapsyn N-te 49.8 54 0.0012 25.1 5.2 47 394-440 18-66 (80)
398 TIGR03504 FimV_Cterm FimV C-te 49.7 40 0.00087 22.5 4.1 24 388-411 5-28 (44)
399 cd08326 CARD_CASP9 Caspase act 49.7 57 0.0012 25.4 5.6 60 241-300 21-80 (84)
400 KOG0292 Vesicle coat complex C 49.4 22 0.00048 39.9 4.4 95 395-513 606-700 (1202)
401 PF11846 DUF3366: Domain of un 49.1 57 0.0012 30.1 6.8 35 482-516 141-175 (193)
402 KOG4077 Cytochrome c oxidase, 48.5 1.2E+02 0.0026 25.6 7.4 60 400-461 67-126 (149)
403 KOG0991 Replication factor C, 48.1 2.5E+02 0.0055 26.7 10.5 139 256-418 136-274 (333)
404 KOG4521 Nuclear pore complex, 47.7 5.6E+02 0.012 30.7 14.9 79 420-500 986-1069(1480)
405 PRK10941 hypothetical protein; 47.7 1.4E+02 0.003 29.4 9.3 65 457-521 185-251 (269)
406 PF13762 MNE1: Mitochondrial s 47.7 1.5E+02 0.0032 25.9 8.3 79 91-169 43-127 (145)
407 KOG3364 Membrane protein invol 47.6 1.4E+02 0.0031 25.6 7.9 31 489-519 75-105 (149)
408 PF13762 MNE1: Mitochondrial s 47.0 2E+02 0.0043 25.2 10.0 48 382-429 79-127 (145)
409 PF07720 TPR_3: Tetratricopept 47.0 63 0.0014 20.4 4.5 30 488-517 4-35 (36)
410 PF08311 Mad3_BUB1_I: Mad3/BUB 45.4 1.3E+02 0.0028 25.6 7.7 42 503-544 81-124 (126)
411 KOG1464 COP9 signalosome, subu 45.1 3E+02 0.0065 26.7 15.7 182 294-475 40-253 (440)
412 PF11846 DUF3366: Domain of un 44.8 77 0.0017 29.3 6.9 51 429-479 120-170 (193)
413 PF12862 Apc5: Anaphase-promot 44.3 58 0.0013 25.9 5.2 52 496-547 9-69 (94)
414 PRK13342 recombination factor 43.9 4.2E+02 0.009 28.0 14.9 46 384-429 229-277 (413)
415 KOG4642 Chaperone-dependent E3 43.1 2.4E+02 0.0053 27.0 9.4 117 361-479 20-143 (284)
416 PF11838 ERAP1_C: ERAP1-like C 42.7 3.6E+02 0.0079 27.0 18.2 86 429-514 142-230 (324)
417 KOG3824 Huntingtin interacting 41.2 45 0.00098 32.7 4.6 59 464-522 127-187 (472)
418 PF10255 Paf67: RNA polymerase 40.2 1.2E+02 0.0025 31.7 7.8 57 252-308 124-191 (404)
419 PF08631 SPO22: Meiosis protei 39.7 3.8E+02 0.0083 26.4 24.3 19 526-544 253-271 (278)
420 PHA02875 ankyrin repeat protei 38.8 4.8E+02 0.011 27.3 13.6 20 256-275 205-224 (413)
421 PF12862 Apc5: Anaphase-promot 38.5 1.6E+02 0.0035 23.3 7.0 23 491-513 47-69 (94)
422 PRK10564 maltose regulon perip 38.4 59 0.0013 32.1 5.0 41 384-424 259-299 (303)
423 PF14561 TPR_20: Tetratricopep 37.6 2E+02 0.0044 22.6 7.8 62 484-545 21-85 (90)
424 COG2909 MalT ATP-dependent tra 37.2 7.2E+02 0.016 28.8 23.9 219 291-510 425-684 (894)
425 cd08332 CARD_CASP2 Caspase act 36.3 1.3E+02 0.0028 23.8 5.9 56 241-296 25-80 (90)
426 PF04910 Tcf25: Transcriptiona 35.7 5.2E+02 0.011 26.7 18.1 96 424-527 110-232 (360)
427 cd00280 TRFH Telomeric Repeat 35.4 1.8E+02 0.0039 26.5 7.1 28 492-520 118-145 (200)
428 cd08326 CARD_CASP9 Caspase act 35.2 81 0.0018 24.6 4.5 35 169-203 42-76 (84)
429 PF14689 SPOB_a: Sensor_kinase 35.2 68 0.0015 23.2 3.8 23 387-409 28-50 (62)
430 PF15161 Neuropep_like: Neurop 34.6 22 0.00047 24.6 1.0 16 645-661 12-27 (65)
431 COG4976 Predicted methyltransf 34.3 57 0.0012 30.7 4.0 56 463-518 5-62 (287)
432 COG3947 Response regulator con 34.2 1.1E+02 0.0023 30.2 5.9 55 160-214 282-339 (361)
433 PF07575 Nucleopor_Nup85: Nup8 34.0 6.9E+02 0.015 27.7 16.1 377 156-591 148-565 (566)
434 PF11525 CopK: Copper resistan 34.0 14 0.00031 26.9 0.1 22 665-686 8-29 (73)
435 PF11848 DUF3368: Domain of un 33.7 97 0.0021 21.0 4.2 31 99-129 14-44 (48)
436 PF06957 COPI_C: Coatomer (COP 33.4 1.7E+02 0.0037 30.7 7.8 39 480-518 293-333 (422)
437 PF04190 DUF410: Protein of un 33.3 4.7E+02 0.01 25.5 17.7 82 349-445 88-169 (260)
438 PRK14956 DNA polymerase III su 32.6 4.7E+02 0.01 28.2 11.0 90 46-159 195-285 (484)
439 PF14689 SPOB_a: Sensor_kinase 32.1 1E+02 0.0022 22.3 4.3 30 416-445 22-51 (62)
440 PF11123 DNA_Packaging_2: DNA 32.1 82 0.0018 23.5 3.7 29 173-201 13-44 (82)
441 PF11663 Toxin_YhaV: Toxin wit 31.4 48 0.001 28.3 2.8 33 393-427 106-138 (140)
442 COG4455 ImpE Protein of avirul 31.3 4.6E+02 0.01 24.8 12.9 57 386-444 5-62 (273)
443 PF12968 DUF3856: Domain of Un 30.9 3.3E+02 0.0071 23.0 7.7 61 485-545 55-126 (144)
444 PF04190 DUF410: Protein of un 30.7 5.2E+02 0.011 25.2 15.6 81 452-548 89-170 (260)
445 KOG1524 WD40 repeat-containing 30.2 2.6E+02 0.0056 30.0 8.2 90 452-544 572-669 (737)
446 KOG3824 Huntingtin interacting 30.0 87 0.0019 30.9 4.6 53 428-483 127-181 (472)
447 cd00280 TRFH Telomeric Repeat 30.0 2.6E+02 0.0057 25.5 7.2 32 459-490 117-148 (200)
448 PF08311 Mad3_BUB1_I: Mad3/BUB 29.8 3.5E+02 0.0075 22.9 8.7 42 400-441 81-123 (126)
449 KOG4077 Cytochrome c oxidase, 29.8 2.6E+02 0.0057 23.7 6.6 41 476-516 75-115 (149)
450 KOG4507 Uncharacterized conser 29.7 2.1E+02 0.0044 31.2 7.5 132 414-548 568-705 (886)
451 PF11848 DUF3368: Domain of un 29.4 1.8E+02 0.004 19.7 5.2 32 393-424 13-44 (48)
452 PRK09169 hypothetical protein; 29.4 1.4E+03 0.031 30.0 40.0 457 53-511 122-692 (2316)
453 PRK10564 maltose regulon perip 29.3 75 0.0016 31.4 4.1 38 283-320 259-296 (303)
454 PHA02537 M terminase endonucle 29.1 5.2E+02 0.011 24.7 10.0 24 393-416 94-118 (230)
455 KOG2063 Vacuolar assembly/sort 29.1 1E+03 0.022 28.0 20.5 27 283-309 506-532 (877)
456 COG0790 FOG: TPR repeat, SEL1 28.8 5.7E+02 0.012 25.1 19.8 115 432-550 128-268 (292)
457 PF12926 MOZART2: Mitotic-spin 28.6 2.9E+02 0.0063 21.6 6.5 42 143-184 29-70 (88)
458 PF15469 Sec5: Exocyst complex 28.3 4.6E+02 0.0099 23.8 11.8 54 386-445 61-114 (182)
459 cd08323 CARD_APAF1 Caspase act 28.2 2.5E+02 0.0054 22.0 6.1 60 241-300 19-78 (86)
460 COG5108 RPO41 Mitochondrial DN 28.2 3E+02 0.0065 30.5 8.5 47 387-433 33-81 (1117)
461 PF04090 RNA_pol_I_TF: RNA pol 27.9 5E+02 0.011 24.1 10.4 30 382-411 41-70 (199)
462 PF08967 DUF1884: Domain of un 27.8 69 0.0015 24.5 2.8 27 578-604 7-33 (85)
463 KOG2300 Uncharacterized conser 27.7 7.9E+02 0.017 26.4 16.7 173 368-543 299-509 (629)
464 COG4976 Predicted methyltransf 27.6 86 0.0019 29.6 4.0 55 495-549 5-59 (287)
465 PF11768 DUF3312: Protein of u 26.6 4.6E+02 0.01 28.5 9.6 60 250-309 408-472 (545)
466 cd08332 CARD_CASP2 Caspase act 26.3 1.7E+02 0.0036 23.2 4.9 32 171-202 48-79 (90)
467 cd02679 MIT_spastin MIT: domai 26.3 1.2E+02 0.0026 23.3 4.0 43 497-547 20-67 (79)
468 COG5159 RPN6 26S proteasome re 25.7 6.6E+02 0.014 24.8 15.3 132 288-419 10-166 (421)
469 PF11817 Foie-gras_1: Foie gra 25.2 2.2E+02 0.0048 27.5 6.8 15 492-506 225-239 (247)
470 PF14669 Asp_Glu_race_2: Putat 24.0 5.8E+02 0.013 23.6 13.0 90 210-305 98-205 (233)
471 PF03745 DUF309: Domain of unk 24.0 1.7E+02 0.0038 21.2 4.3 19 98-116 10-28 (62)
472 cd08323 CARD_APAF1 Caspase act 23.9 2.4E+02 0.0052 22.1 5.3 34 169-202 40-73 (86)
473 PF10255 Paf67: RNA polymerase 23.6 3.2E+02 0.0069 28.6 7.7 56 222-277 125-191 (404)
474 PRK11639 zinc uptake transcrip 23.5 3.5E+02 0.0076 24.3 7.2 46 91-136 29-74 (169)
475 PF11838 ERAP1_C: ERAP1-like C 23.3 7.5E+02 0.016 24.7 21.6 25 266-290 56-82 (324)
476 KOG4567 GTPase-activating prot 23.3 5.5E+02 0.012 25.7 8.6 84 142-226 263-356 (370)
477 TIGR02414 pepN_proteo aminopep 22.9 1.3E+03 0.028 27.3 15.2 152 386-541 676-836 (863)
478 KOG0292 Vesicle coat complex C 22.9 4E+02 0.0087 30.7 8.5 132 165-310 651-782 (1202)
479 PF09670 Cas_Cas02710: CRISPR- 22.8 7.5E+02 0.016 25.8 10.4 55 96-151 140-198 (379)
480 KOG0686 COP9 signalosome, subu 22.7 9E+02 0.019 25.3 13.1 58 252-309 152-215 (466)
481 KOG2297 Predicted translation 22.6 7.9E+02 0.017 24.6 11.9 18 221-238 323-340 (412)
482 PF10155 DUF2363: Uncharacteri 22.5 4.9E+02 0.011 22.2 9.6 109 71-183 5-124 (126)
483 PF08225 Antimicrobial19: Pseu 22.3 56 0.0012 17.5 1.0 12 650-661 10-21 (23)
484 PF10475 DUF2450: Protein of u 22.2 5.9E+02 0.013 25.3 9.3 53 255-309 103-155 (291)
485 PRK11639 zinc uptake transcrip 22.2 3.2E+02 0.0069 24.6 6.7 61 408-470 17-77 (169)
486 COG5191 Uncharacterized conser 22.2 1.9E+02 0.0041 28.7 5.3 75 449-523 103-180 (435)
487 PF02847 MA3: MA3 domain; Int 21.6 2.8E+02 0.0061 22.6 5.9 21 287-307 8-28 (113)
488 PLN03192 Voltage-dependent pot 21.0 1.2E+03 0.025 27.4 12.8 141 168-315 533-682 (823)
489 PF10925 DUF2680: Protein of u 20.9 1.2E+02 0.0025 21.9 2.8 26 574-599 34-59 (59)
490 COG4941 Predicted RNA polymera 20.7 9E+02 0.02 24.6 12.1 119 397-520 271-400 (415)
491 KOG0376 Serine-threonine phosp 20.7 1.7E+02 0.0038 30.9 5.1 104 389-497 11-117 (476)
492 COG0735 Fur Fe2+/Zn2+ uptake r 20.5 4.5E+02 0.0097 22.9 7.0 62 406-469 10-71 (145)
493 PF04090 RNA_pol_I_TF: RNA pol 20.3 6E+02 0.013 23.7 8.0 61 486-546 42-103 (199)
494 KOG2758 Translation initiation 20.3 8.9E+02 0.019 24.4 13.3 163 337-513 21-195 (432)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.6e-127 Score=1099.66 Aligned_cols=664 Identities=36% Similarity=0.652 Sum_probs=650.1
Q ss_pred ccCCccchH-HHHhcCCC---chHHHHHHHHHHHhCCCCCchHHHHHhhcccccCCCCHHHHHHHHhcccCCCChhhHHH
Q 036237 17 QHLPSRLHW-NILKFSST---HKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNL 92 (689)
Q Consensus 17 ~~~p~~~~~-~~l~~c~~---~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~ 92 (689)
+..|+..|| .+|++|+. +..++++|..+.+.|+.||++++|.||.+|++ +|++++|.++|++|+ .||+++||+
T Consensus 182 g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k--~g~~~~A~~lf~~m~-~~d~~s~n~ 258 (857)
T PLN03077 182 GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVK--CGDVVSARLVFDRMP-RRDCISWNA 258 (857)
T ss_pred CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhc--CCCHHHHHHHHhcCC-CCCcchhHH
Confidence 688999999 78899975 78899999999999999999999999999999 999999999999999 999999999
Q ss_pred HHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 036237 93 LIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGE 172 (689)
Q Consensus 93 ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 172 (689)
+|.+|++.|++++|+++|.+|.+.|+.||..||+.++.+|++.|+++.|.++|..+.+.|+.||..+||+||.+|+++|+
T Consensus 259 li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~ 338 (857)
T PLN03077 259 MISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGS 338 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhCCCCCeehHHHHHHHHHhCCChHHHHHHHhhCCC----CCcchHHHHHHHHHhCCChHHHHHHHhhcCc-
Q 036237 173 IDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD----RDLFSWTCLVDGFSKCGKVEIAREIFYRMPN- 247 (689)
Q Consensus 173 ~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~- 247 (689)
+++|.++|++|.++|+++||++|.+|++.|++++|+++|++|.+ ||..||++++.+|++.|+++.|.++++.+.+
T Consensus 339 ~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~ 418 (857)
T PLN03077 339 WGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERK 418 (857)
T ss_pred HHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999954 8999999999999999999999999999986
Q ss_pred ---CCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHH
Q 036237 248 ---RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS 324 (689)
Q Consensus 248 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 324 (689)
++..+|++||++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.. +++||..||+.++.
T Consensus 419 g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~ 497 (857)
T PLN03077 419 GLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALS 497 (857)
T ss_pred CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999986 69999999999999
Q ss_pred HHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHH
Q 036237 325 AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDL 404 (689)
Q Consensus 325 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 404 (689)
+|++.|.++.+.++|..+.+.|+.+|..++|+|+++|+++|++++|.++|+.+ .+|+.+||+||.+|+++|+.++|+++
T Consensus 498 a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~l 576 (857)
T PLN03077 498 ACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVEL 576 (857)
T ss_pred HHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 89999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC
Q 036237 405 FNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPN 484 (689)
Q Consensus 405 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~ 484 (689)
|++|.+.|+.||.+||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|+++|++++|.+++++|+++||
T Consensus 577 f~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd 656 (857)
T PLN03077 577 FNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPD 656 (857)
T ss_pred HHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCC
Confidence 99999999999999999999999999999999999999997889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCCcccEEEECCE
Q 036237 485 FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGV 564 (689)
Q Consensus 485 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~ 564 (689)
..+|++|+.+|..+|+.+.|+.+.+++++++|+++..|..|+++|+..|+|++|.++++.|+++|++|+||+|||++++.
T Consensus 657 ~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~ 736 (857)
T PLN03077 657 PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGK 736 (857)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeCCCCCcChHHHHHHHHHHHHHHHHCCCCCCCcccccccchhhHHHHhhhhhHHHHHHHHHhcCCCCCCcEEEec
Q 036237 565 LHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIAFGLINVKSRSPIRIVK 644 (689)
Q Consensus 565 ~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~l~~~~~~la~~~~~~~~~~~~~~~~~~ 644 (689)
+|.|.+||.+||+.++|+..|+++..+|++.||.||+..++ +.++ ++|+..|++||||||+|||||++|+|.||||+|
T Consensus 737 ~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~-~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~k 814 (857)
T PLN03077 737 VHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIE-VSKDDIFCGHSERLAIAFGLINTVPGMPIWVTK 814 (857)
T ss_pred EEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccH-HHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeC
Confidence 99999999999999999999999999999999999999877 4466 789999999999999999999999999999999
Q ss_pred ccccccchhhHHHHhhhhcCceEEEecCCccccccCccCCCCC
Q 036237 645 NLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKD 687 (689)
Q Consensus 645 ~~~~c~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~~g~csc~~ 687 (689)
|||+|+|||+++||||++.+|+|||||.+|||||+||+|||+|
T Consensus 815 nlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 815 NLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred CCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 9999999999999999999999999999999999999999998
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.2e-119 Score=1015.34 Aligned_cols=611 Identities=34% Similarity=0.582 Sum_probs=596.4
Q ss_pred HhcccCCCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCC-CCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc
Q 036237 78 FDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRF-LLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFD 156 (689)
Q Consensus 78 f~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 156 (689)
++..+..++..+|+++|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.+.++|..|++.|+.||
T Consensus 78 ~~~~~~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~ 157 (697)
T PLN03081 78 LDDTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPD 157 (697)
T ss_pred cccccCCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcc
Confidence 3333325677899999999999999999999999999864 789999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCCCCeehHHHHHHHHHhCCChHHHHHHHhhCCC----CCcchHHHHHHHHHhC
Q 036237 157 KFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD----RDLFSWTCLVDGFSKC 232 (689)
Q Consensus 157 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~d~~~~~~li~~~~~~ 232 (689)
..+||.|+++|+++|+++.|.++|++|++||.++||++|.+|++.|++++|+++|++|.+ ||..||+.++.+|++.
T Consensus 158 ~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~ 237 (697)
T PLN03081 158 QYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL 237 (697)
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999964 7899999999999999
Q ss_pred CChHHHHHHHhhcCc----CCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHhc
Q 036237 233 GKVEIAREIFYRMPN----RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETML 308 (689)
Q Consensus 233 g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 308 (689)
|..+.+.+++..+.+ ++..+|++||++|+++|++++|.++|++|..+|+++||+||.+|++.|++++|+++|++|.
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 238 GSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred CcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999999988875 6799999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHH
Q 036237 309 IGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAM 388 (689)
Q Consensus 309 ~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 388 (689)
+.|+.||..||++++.+|++.|.++.|.++|..+.+.|+.+|..++++|+++|+++|++++|.++|++|.++|+.+||+|
T Consensus 318 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~l 397 (697)
T PLN03081 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNAL 397 (697)
T ss_pred HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 036237 389 IVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGY 468 (689)
Q Consensus 389 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 468 (689)
|.+|+++|+.++|+++|++|.+.|+.||.+||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|++||++|++.|+
T Consensus 398 I~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~ 477 (697)
T PLN03081 398 IAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGL 477 (697)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 469 LEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 469 ~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
+++|.+++++|+.+|+..+|++|+.+|+.+|+++.|+.+++++++++|+++.+|..|+++|++.|+|++|.++++.|+++
T Consensus 478 ~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 478 LDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCcccEEEECCEEEEEeeCCCCCcChHHHHHHHHHHHHHHHHCCCCCCCcccccccchhhHHHHhhhhhHHHHHHH
Q 036237 549 GFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLAIA 628 (689)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~l~~~~~~la~~ 628 (689)
|+++.|++||+++++.+|.|.+||..||+.++|+..|.++..+|++.||.||+.++++++++ ++++..+.+||||||+|
T Consensus 558 g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~-~~~~~~~~~hsekla~a 636 (697)
T PLN03081 558 GLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDE-DEEKVSGRYHSEKLAIA 636 (697)
T ss_pred CCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccH-HHHHHHHHhccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 89999999999999999
Q ss_pred HHhcCCCCCCcEEEecccccccchhhHHHHhhhhcCceEEEecCCccccccCccCCCCCCC
Q 036237 629 FGLINVKSRSPIRIVKNLRVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFKNGSCSCKDFW 689 (689)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~~g~csc~~~~ 689 (689)
|||+++|+|.||||+||||+|+|||+|+|+||++.+|+|||||.+|||||+||+|||+|||
T Consensus 637 ~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 637 FGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred hhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8.2e-81 Score=717.30 Aligned_cols=643 Identities=25% Similarity=0.388 Sum_probs=572.5
Q ss_pred cCCccchH-HHHhcCCC---chHHHHHHHHHHHhCCCCCchHHHHHhhcccccCCCCHHHHHHHHhcccCCCChhhHHHH
Q 036237 18 HLPSRLHW-NILKFSST---HKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLL 93 (689)
Q Consensus 18 ~~p~~~~~-~~l~~c~~---~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~l 93 (689)
..|+..++ .+++.|.. +..+.++|..+.+.|..+++.++|.|+++|++ +|+++.|+++|++|+ +||+++||++
T Consensus 82 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~--~g~~~~A~~~f~~m~-~~d~~~~n~l 158 (857)
T PLN03077 82 VPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVR--FGELVHAWYVFGKMP-ERDLFSWNVL 158 (857)
T ss_pred CCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHh--CCChHHHHHHHhcCC-CCCeeEHHHH
Confidence 46777777 77888864 78899999999999999999999999999999 999999999999999 9999999999
Q ss_pred HHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 036237 94 IKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEI 173 (689)
Q Consensus 94 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 173 (689)
|.+|++.|++++|+++|++|...|+.||.+||+.++++|+..++++.+.++|..+++.|+.||..++|+||.+|+++|++
T Consensus 159 i~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~ 238 (857)
T PLN03077 159 VGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDV 238 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCCeehHHHHHHHHHhCCChHHHHHHHhhCCC----CCcchHHHHHHHHHhCCChHHHHHHHhhcCc--
Q 036237 174 DLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD----RDLFSWTCLVDGFSKCGKVEIAREIFYRMPN-- 247 (689)
Q Consensus 174 ~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~-- 247 (689)
++|.++|++|+++|.++||+||.+|++.|+.++|+++|++|.+ ||..||+.++.+|++.|+.+.|.+++..|.+
T Consensus 239 ~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g 318 (857)
T PLN03077 239 VSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTG 318 (857)
T ss_pred HHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999964 8999999999999999999999999999986
Q ss_pred --CCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHH
Q 036237 248 --RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSA 325 (689)
Q Consensus 248 --~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 325 (689)
++..+||+||++|+++|++++|.++|++|..+|+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+
T Consensus 319 ~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a 398 (857)
T PLN03077 319 FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSA 398 (857)
T ss_pred CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHH
Confidence 679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 036237 326 VAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLF 405 (689)
Q Consensus 326 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 405 (689)
|++.|+++.|.++|+.+.+.|+.++..++++|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|
T Consensus 399 ~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf 478 (857)
T PLN03077 399 CACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFF 478 (857)
T ss_pred HhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH
Q 036237 406 NKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNF 485 (689)
Q Consensus 406 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~ 485 (689)
++|.. +++||..||+.++.+|++.|.++.+.+++..+.+ .|+.++..++++||++|+++|++++|.++|+++ .||.
T Consensus 479 ~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~-~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~ 554 (857)
T PLN03077 479 RQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLR-TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDV 554 (857)
T ss_pred HHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH-hCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCCh
Confidence 99986 6999999999999999999999999999999994 699999999999999999999999999999999 7999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCCCchhHHHHHHHHHhcCCcchHHHHHHHHH-hCCCccCCcccEEEEC
Q 036237 486 VIWMSLLSGARNHGNKDIGEYAANNLIK--VAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMK-KRGFRKDPGSSSIEHR 562 (689)
Q Consensus 486 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~-~~~~~~~~~~~~~~~~ 562 (689)
.+|++++.+|.++|+.++|..+|++|.+ ..| |..+|..++.+|.+.|++++|.++|+.|+ +.|+.|+...+...+.
T Consensus 555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~ 633 (857)
T PLN03077 555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNP-DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVD 633 (857)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 9999999999999999999999999988 556 55799999999999999999999999998 7899888654432221
Q ss_pred CEEEEEeeCCCCCcChHHHHHHHHHHHHHHHHCCCCCCCcccccccchhhHHHHhhhhhHHHHH-HHHHhcCCCCCCcEE
Q 036237 563 GVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEKEAELENHSERLA-IAFGLINVKSRSPIR 641 (689)
Q Consensus 563 ~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~l~~~~~~la-~~~~~~~~~~~~~~~ 641 (689)
. + ...+..+ +..+.++++++.||...|...+.. +.....+. ..|..+ ..+.+.+...+..+.
T Consensus 634 ~----l----~r~G~~~-------eA~~~~~~m~~~pd~~~~~aLl~a-c~~~~~~e-~~e~~a~~l~~l~p~~~~~y~l 696 (857)
T PLN03077 634 L----L----GRAGKLT-------EAYNFINKMPITPDPAVWGALLNA-CRIHRHVE-LGELAAQHIFELDPNSVGYYIL 696 (857)
T ss_pred H----H----HhCCCHH-------HHHHHHHHCCCCCCHHHHHHHHHH-HHHcCChH-HHHHHHHHHHhhCCCCcchHHH
Confidence 1 1 1122333 444445556799999988665554 43222111 112222 234555555555554
Q ss_pred EecccccccchhhHHHHhhhhcCceEEE-------ecCCccccccCccCCC
Q 036237 642 IVKNLRVCNDCHSVTKLLSGIYNREIIV-------RDNSRFHHFKNGSCSC 685 (689)
Q Consensus 642 ~~~~~~~c~~~~~~~~~~s~~~~~~~~~-------~~~~~~h~~~~g~csc 685 (689)
+.+-....|+-.++.++...|..+.+.. --.+..|-|..|--|-
T Consensus 697 l~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h 747 (857)
T PLN03077 697 LCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESH 747 (857)
T ss_pred HHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCC
Confidence 4455667899999999999887773321 1135778887665443
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.2e-66 Score=581.35 Aligned_cols=497 Identities=17% Similarity=0.214 Sum_probs=458.1
Q ss_pred CCCchHHHHHhhcccccCCCCHHHHHHHHhcccC----CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccH
Q 036237 50 IYHSGISSRLLSLYVDPHINNLHYARSIFDRILQ----HPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTL 125 (689)
Q Consensus 50 ~~~~~~~~~ll~~~~~~~~g~~~~A~~~f~~~~~----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 125 (689)
.++...+..++..+++ +|++++|+++|++|+. .++...++.++.+|.+.|..++|+++|+.|.. ||..||
T Consensus 367 ~~~~~~~~~~y~~l~r--~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Ty 440 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLR--DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTF 440 (1060)
T ss_pred CCCchHHHHHHHHHHH--CcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHH
Confidence 4567888999999999 9999999999999983 23444566778889999999999999999974 999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC----CCCeehHHHHHHHHHhC
Q 036237 126 PCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD----DKDLVSWNCLIDGYVKK 201 (689)
Q Consensus 126 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~ 201 (689)
+.++.+|++.|+++.|.++|+.|.+.|+.||..+|++||.+|+++|++++|.++|++|. .||.++||+||.+|++.
T Consensus 441 n~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~ 520 (1060)
T PLN03218 441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA 520 (1060)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999998 58999999999999999
Q ss_pred CChHHHHHHHhhCCC----CCcchHHHHHHHHHhCCChHHHHHHHhhcC------cCCcchHHHHHHHHHhcCCHHHHHH
Q 036237 202 GEVEVAMKLFDEMPD----RDLFSWTCLVDGFSKCGKVEIAREIFYRMP------NRNLVSWNAMINGYMKAGDVDSACE 271 (689)
Q Consensus 202 g~~~~A~~~~~~m~~----~d~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~ 271 (689)
|++++|+++|++|.+ ||.++|+.||.+|++.|++++|.++|++|. .|+..+|++||++|+++|++++|.+
T Consensus 521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e 600 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999964 899999999999999999999999999995 4788999999999999999999999
Q ss_pred HHHhcCC----CChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCC
Q 036237 272 LFDDMEI----RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGF 347 (689)
Q Consensus 272 ~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~ 347 (689)
+|+.|.+ ++..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+
T Consensus 601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~ 680 (1060)
T PLN03218 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680 (1060)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 9999985 467999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHhHHHhhHHhcCCHHHHHHHHHhcC----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036237 348 VVDGVLGTLLIQMYSKCGSIESALTVFRAIS----KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGV 423 (689)
Q Consensus 348 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 423 (689)
.|+..+|++||.+|+++|++++|.++|++|. .||+.+||+||.+|++.|++++|+++|++|.+.|+.||..||+.+
T Consensus 681 ~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sL 760 (1060)
T PLN03218 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL 760 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 9999999999999999999999999999995 589999999999999999999999999999999999999999999
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH----hcC-------------------CHHHHHHHHHhC-
Q 036237 424 LNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILC----RTG-------------------YLEEAKSTIESM- 479 (689)
Q Consensus 424 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~----~~g-------------------~~~~A~~~~~~~- 479 (689)
+.+|++.|++++|.++|+.|.+ .|+.||..+|++|+.++. +++ ..++|..+|++|
T Consensus 761 L~a~~k~G~le~A~~l~~~M~k-~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~ 839 (1060)
T PLN03218 761 LVASERKDDADVGLDLLSQAKE-DGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETI 839 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHH
Confidence 9999999999999999999994 599999999999998743 222 246799999998
Q ss_pred --CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh-cCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCCc
Q 036237 480 --PMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIK-VAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPG 555 (689)
Q Consensus 480 --~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 555 (689)
++.||..||+.++.++++.++.+.+..+++.+.. -.+.+..+|..|++.+.+. .++|..++++|.+.|+.|+..
T Consensus 840 ~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 840 SAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 5889999999999888888889988888877643 3445677999999988332 358999999999999998875
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.4e-62 Score=551.57 Aligned_cols=484 Identities=18% Similarity=0.195 Sum_probs=452.8
Q ss_pred HhcCCCchHHHHHHHHHHHhCC-CCCchHHHHHhhcccccCCCCHHHHHHHHhcccCCCChhhHHHHHHHHHhCCCchHH
Q 036237 28 LKFSSTHKETQQLHALSVKTNL-IYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEA 106 (689)
Q Consensus 28 l~~c~~~~~~~~~~~~~~~~g~-~~~~~~~~~ll~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~ll~~~~~~g~~~~a 106 (689)
+..++.+..+.+++..|.+.|+ .++..+++.++..|.+ .|.+++|..+|+.|+ .||..+||.+|.+|++.|++++|
T Consensus 380 l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~--~g~~~eAl~lf~~M~-~pd~~Tyn~LL~a~~k~g~~e~A 456 (1060)
T PLN03218 380 LLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKK--QRAVKEAFRFAKLIR-NPTLSTFNMLMSVCASSQDIDGA 456 (1060)
T ss_pred HHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH--CCCHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCcCHHHH
Confidence 3345779999999999999996 5678888999999999 999999999999999 89999999999999999999999
Q ss_pred HHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC--
Q 036237 107 LTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD-- 184 (689)
Q Consensus 107 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-- 184 (689)
.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.
T Consensus 457 ~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~ 536 (1060)
T PLN03218 457 LRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK 536 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred --CCCeehHHHHHHHHHhCCChHHHHHHHhhCC------CCCcchHHHHHHHHHhCCChHHHHHHHhhcCc----CCcch
Q 036237 185 --DKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP------DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPN----RNLVS 252 (689)
Q Consensus 185 --~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~ 252 (689)
.||.++||.||.+|++.|++++|.++|++|. .||.++|++++.+|++.|++++|.++|+.|.+ ++..+
T Consensus 537 Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~t 616 (1060)
T PLN03218 537 NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV 616 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHH
Confidence 4899999999999999999999999999995 37999999999999999999999999999987 45699
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC----CCChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHc
Q 036237 253 WNAMINGYMKAGDVDSACELFDDME----IRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAG 328 (689)
Q Consensus 253 ~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 328 (689)
|+.+|.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..+|+.++.+|++
T Consensus 617 ynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k 696 (1060)
T PLN03218 617 YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSN 696 (1060)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999999999998 469999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC----CChhhHHHHHHHHHHcCCHHHHHHH
Q 036237 329 LAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK----KKVGHWTAMIVGLGMHGMATQALDL 404 (689)
Q Consensus 329 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l 404 (689)
.|++++|.++|+.|.+.|+.||..+|++||.+|++.|++++|.++|++|.. ||..+|+++|.+|++.|+.++|.++
T Consensus 697 ~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l 776 (1060)
T PLN03218 697 AKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDL 776 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999974 7999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhc----c-------------------CcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 036237 405 FNKMCRMGMKPTAITFIGVLNACSH----A-------------------GLVNDGRRYFNMMINDYGIEPTIEHYGCLVD 461 (689)
Q Consensus 405 ~~~m~~~g~~p~~~t~~~ll~a~~~----~-------------------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 461 (689)
|.+|.+.|+.||..+|+.++..|.+ . +..+.|..+|++|.+ .|+.||..+|+.++.
T Consensus 777 ~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~-~Gi~Pd~~T~~~vL~ 855 (1060)
T PLN03218 777 LSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETIS-AGTLPTMEVLSQVLG 855 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH-CCCCCCHHHHHHHHH
Confidence 9999999999999999999876542 1 224679999999995 599999999999999
Q ss_pred HHHhcCCHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCC
Q 036237 462 ILCRTGYLEEAKSTIESMP---MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIK--VAPD 517 (689)
Q Consensus 462 ~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~ 517 (689)
.+.+.+..+.+..+++.|. ..|+..+|++|+.++.+. .++|..++++|.+ +-|+
T Consensus 856 cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~ 914 (1060)
T PLN03218 856 CLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPS 914 (1060)
T ss_pred HhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999985 457889999999998543 4689999999988 4454
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.6e-62 Score=550.69 Aligned_cols=422 Identities=24% Similarity=0.379 Sum_probs=381.3
Q ss_pred cCCccchH-HHHhcCCC---chHHHHHHHHHHHhCCCCCchHHHHHhhcccccCCCCHHHHHHHHhcccCCCChhhHHHH
Q 036237 18 HLPSRLHW-NILKFSST---HKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVLYNLL 93 (689)
Q Consensus 18 ~~p~~~~~-~~l~~c~~---~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~l 93 (689)
..|+..++ .+|++|.. ++.+.++|..+.+.|+.||++++|.|+.+|++ +|++++|.++|++|+ .||+++||++
T Consensus 119 ~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k--~g~~~~A~~lf~~m~-~~~~~t~n~l 195 (697)
T PLN03081 119 FTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVK--CGMLIDARRLFDEMP-ERNLASWGTI 195 (697)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhc--CCCHHHHHHHHhcCC-CCCeeeHHHH
Confidence 46788888 67888864 78899999999999999999999999999999 999999999999999 9999999999
Q ss_pred HHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 036237 94 IKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEI 173 (689)
Q Consensus 94 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 173 (689)
|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..+.+.++|..+.+.|+.||..++|+||++|+++|++
T Consensus 196 i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~ 275 (697)
T PLN03081 196 IGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDI 275 (697)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCCeehHHHHHHHHHhCCChHHHHHHHhhCC----CCCcchHHHHHHHHHhCCChHHHHHHHhhcCc--
Q 036237 174 DLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP----DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPN-- 247 (689)
Q Consensus 174 ~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~-- 247 (689)
++|.++|++|+++|+++||+||.+|++.|+.++|+++|++|. .||..||++++.+|++.|++++|.+++..|.+
T Consensus 276 ~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g 355 (697)
T PLN03081 276 EDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG 355 (697)
T ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999995 48999999999999999999999999999985
Q ss_pred --CCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHH
Q 036237 248 --RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSA 325 (689)
Q Consensus 248 --~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 325 (689)
++..+|++||++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+
T Consensus 356 ~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a 435 (697)
T PLN03081 356 FPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA 435 (697)
T ss_pred CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcccchhhHHHHHHHHHH-hCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC-CChhhHHHHHHHHHHcCCHHHHHH
Q 036237 326 VAGLAVLNKGRWMHSYIVK-NGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK-KKVGHWTAMIVGLGMHGMATQALD 403 (689)
Q Consensus 326 ~~~~~~~~~a~~i~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~ 403 (689)
|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.++|++|.. |+..+|++|+.+|..+|+.+.|..
T Consensus 436 ~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~ 515 (697)
T PLN03081 436 CRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRL 515 (697)
T ss_pred HhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHH
Confidence 9999999999999999986 68999888888888888888888888877777653 566666666666666666666666
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 036237 404 LFNKMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMI 444 (689)
Q Consensus 404 l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 444 (689)
+++++.+ +.|+ ..+|..+++.|++.|++++|.++++.|.
T Consensus 516 ~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~ 555 (697)
T PLN03081 516 AAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLK 555 (697)
T ss_pred HHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 6666653 3443 3456666666666666666666666665
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=9.6e-30 Score=299.25 Aligned_cols=512 Identities=13% Similarity=0.045 Sum_probs=378.8
Q ss_pred HHhcCCCchHHHHHHHHHHHhCCCCCchHHHHHhhcccccCCCCHHHHHHHHhcccC--CCChhhHHHHHHHHHhCCCch
Q 036237 27 ILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQ--HPSLVLYNLLIKCYVFNQRSH 104 (689)
Q Consensus 27 ~l~~c~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~~ll~~~~~~g~~~ 104 (689)
++...+..+.+...+..+++.. +.++.+++.+...|.+ .|++++|...|+++.. +.+...|..+...+...|+++
T Consensus 338 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 414 (899)
T TIGR02917 338 IQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLA--LGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPS 414 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChH
Confidence 3445566788888877776654 3456777788888888 8999999999987753 345567777888888888899
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC
Q 036237 105 EALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD 184 (689)
Q Consensus 105 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 184 (689)
+|.+.|+.+.+.... +......++..+.+.|++++|..+++.+.+.. +++..+++.+...|...|++++|...|+++.
T Consensus 415 ~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 492 (899)
T TIGR02917 415 EAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKAL 492 (899)
T ss_pred HHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 898888888775422 23345556677778888888888888887653 5567788888888888888888888888765
Q ss_pred C---CCeehHHHHHHHHHhCCChHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChHHHHHHHhhcCc---CCcchHHH
Q 036237 185 D---KDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD---RDLFSWTCLVDGFSKCGKVEIAREIFYRMPN---RNLVSWNA 255 (689)
Q Consensus 185 ~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 255 (689)
+ .+...+..+...+...|++++|.+.|+++.+ .+..++..+...+.+.|+.++|...+.++.+ .+...+..
T Consensus 493 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 572 (899)
T TIGR02917 493 SIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALA 572 (899)
T ss_pred hhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHH
Confidence 3 3455677777888888888888888888754 2456777778888888888888888887754 23556677
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccch
Q 036237 256 MINGYMKAGDVDSACELFDDMEI---RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVL 332 (689)
Q Consensus 256 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 332 (689)
++..|.+.|++++|..+++.+.. .+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++
T Consensus 573 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 651 (899)
T TIGR02917 573 LAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNY 651 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCH
Confidence 78888888888888888887753 356778888888888888888888888877643 23445566777777788888
Q ss_pred hhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036237 333 NKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMC 409 (689)
Q Consensus 333 ~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 409 (689)
++|..++..+.+.. +.+...+..++..+...|++++|.++++.+.. .+...|..+...+...|++++|++.|+++.
T Consensus 652 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 730 (899)
T TIGR02917 652 AKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKAL 730 (899)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 88888888877654 34566777788888888888888888887764 345567777777888888888888888877
Q ss_pred HCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHH
Q 036237 410 RMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP--MRPNFVI 487 (689)
Q Consensus 410 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~ 487 (689)
.. .|+..++..+..++.+.|++++|.+.++.+.+ ..+.+...+..+...|.+.|++++|...|+++- .+++..+
T Consensus 731 ~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 806 (899)
T TIGR02917 731 KR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVV 806 (899)
T ss_pred hh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHH
Confidence 74 45556666777777888888888888877774 334456777777788888888888888887762 2345667
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCCC
Q 036237 488 WMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGF 550 (689)
Q Consensus 488 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~~ 550 (689)
++.+...+...|+ +.|+..+++++++.|+++..+..++.+|...|++++|.++++++.+.+.
T Consensus 807 ~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 807 LNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 7777777777777 6677777777777777777777777777777777777777777776553
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2e-29 Score=296.63 Aligned_cols=509 Identities=14% Similarity=0.052 Sum_probs=429.4
Q ss_pred HhcCCCchHHHHHHHHHHHhCCCCCchHHHHHhhcccccCCCCHHHHHHHHhcccC--CCChhhHHHHHHHHHhCCCchH
Q 036237 28 LKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQ--HPSLVLYNLLIKCYVFNQRSHE 105 (689)
Q Consensus 28 l~~c~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~~ll~~~~~~g~~~~ 105 (689)
+...+..+.+...+..+++.. +.+......+...+.+ .|++++|...+..+.. +.+...|+.+...+.+.|++++
T Consensus 305 ~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 381 (899)
T TIGR02917 305 EYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLR--LGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEK 381 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH--CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHH
Confidence 344566888888888887754 3456677778888888 9999999999988753 4466788999999999999999
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC
Q 036237 106 ALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD 185 (689)
Q Consensus 106 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 185 (689)
|.+.|+++.+.. +.+...+..+...+...|++++|...+..+.+.. +........++..|.+.|++++|..+++.+..
T Consensus 382 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 459 (899)
T TIGR02917 382 AAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEK 459 (899)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999998753 2245567777778889999999999999998876 33445667788899999999999999998864
Q ss_pred ---CCeehHHHHHHHHHhCCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhCCChHHHHHHHhhcCc---CCcchHHHH
Q 036237 186 ---KDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD--R-DLFSWTCLVDGFSKCGKVEIAREIFYRMPN---RNLVSWNAM 256 (689)
Q Consensus 186 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 256 (689)
.+..+|+.+...|...|++++|...|+++.+ | +...+..+...+...|++++|.+.++.+.+ .+..++..+
T Consensus 460 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 539 (899)
T TIGR02917 460 KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILAL 539 (899)
T ss_pred hCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 4667899999999999999999999998865 3 456777888899999999999999999875 346788889
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchh
Q 036237 257 INGYMKAGDVDSACELFDDMEI---RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLN 333 (689)
Q Consensus 257 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 333 (689)
...|.+.|+.++|...|+++.. .+...+..++..|...|++++|+.+++++.... +.+..++..+...+...|+++
T Consensus 540 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 618 (899)
T TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLN 618 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999998753 356778889999999999999999999998643 456778888999999999999
Q ss_pred hHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036237 334 KGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCR 410 (689)
Q Consensus 334 ~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 410 (689)
+|...+..+.+.. +.+...+..+...|.+.|++++|...|+++.. .+..+|..++..+...|++++|.++++.+.+
T Consensus 619 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 697 (899)
T TIGR02917 619 KAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQK 697 (899)
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999998765 44667788899999999999999999998765 3567899999999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHH
Q 036237 411 MGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-P-MRPNFVIW 488 (689)
Q Consensus 411 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~ 488 (689)
.+ +++...+..+...+...|++++|...|+.+.. ..|+..++..++.++.+.|++++|.+.++++ . .+.+...+
T Consensus 698 ~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 773 (899)
T TIGR02917 698 QH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALK---RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLR 773 (899)
T ss_pred hC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 64 45566788888899999999999999999883 4566678888999999999999999999886 2 33467788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 489 MSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 489 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
..+...|...|+.+.|...++++++..|+++.++..++.+|...|+ .+|..+++++.+.
T Consensus 774 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 774 TALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 8899999999999999999999999999999999999999999999 8899999988764
No 9
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.96 E-value=2.9e-30 Score=214.22 Aligned_cols=106 Identities=63% Similarity=0.978 Sum_probs=96.0
Q ss_pred cccEEEECCEEEEEeeCCCCCcChHHHHHHHHHHHHHHHHCCCCCCCcccccccchhhHH--------HHhhhhhHHHHH
Q 036237 555 GSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCIEDQKEK--------EAELENHSERLA 626 (689)
Q Consensus 555 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~--------~~~l~~~~~~la 626 (689)
+++|+++ |.|.+||.+||+. ++..++...||.|++..+.+++++ +++ +..+..||||||
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~-e~~~~~d~~~~~~~~~~HSEKlA 68 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDE-EEKHDYDEEEKEESLCYHSEKLA 68 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchh-hhhhhcccccchhhhhccHHHHH
Confidence 6889876 9999999999997 556677888999999999888776 444 568899999999
Q ss_pred HHHHhcCCCCCCcEEEeccc-ccccchhhHHHHhhhhcCceEEEecCCcccccc
Q 036237 627 IAFGLINVKSRSPIRIVKNL-RVCNDCHSVTKLLSGIYNREIIVRDNSRFHHFK 679 (689)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~-~~c~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~ 679 (689)
+||||+++ +|+||+ |+|+|||+++|+||++++|+|+|||++||||||
T Consensus 69 iafgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 69 IAFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred HHhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 99999999 899998 999999999999999999999999999999997
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=1.1e-21 Score=232.25 Aligned_cols=502 Identities=14% Similarity=0.063 Sum_probs=330.7
Q ss_pred CCchHHHHHHHHHHHhCCCCCchHHHHHhhcccccCCCCHHHHHHHHhcccC-CCChh-hH----------------HHH
Q 036237 32 STHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQ-HPSLV-LY----------------NLL 93 (689)
Q Consensus 32 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~f~~~~~-~~~~~-~~----------------~~l 93 (689)
.+.+.+++...++.... +.++.++..+...+.+ .|+.++|.+.+++... .|+.. .+ ..+
T Consensus 42 ~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~--~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~ 118 (1157)
T PRK11447 42 HREDLVRQSLYRLELID-PNNPDVIAARFRLLLR--QGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQ 118 (1157)
T ss_pred CChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHH
Confidence 44777888777766543 3357778888888888 9999999999998864 34332 22 223
Q ss_pred HHHHHhCCCchHHHHHHHHhHhCCCCCCcc-cHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 036237 94 IKCYVFNQRSHEALTLFCDLLDRFLLPDNF-TLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGE 172 (689)
Q Consensus 94 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 172 (689)
...+...|++++|++.|+.+.+.+ +|+.. ............|+.++|...++.+++.. +.+...+..+...+...|+
T Consensus 119 A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~ 196 (1157)
T PRK11447 119 ARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGR 196 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCC
Confidence 346788999999999999998753 33322 11111222234589999999999999885 5567788899999999999
Q ss_pred hHHHHHHHhhCCCCCe------eh-----------------HH----------------------------------HHH
Q 036237 173 IDLGRRVFDAMDDKDL------VS-----------------WN----------------------------------CLI 195 (689)
Q Consensus 173 ~~~A~~~~~~m~~~~~------~~-----------------~~----------------------------------~li 195 (689)
.++|...|+++.+... .. +. ...
T Consensus 197 ~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G 276 (1157)
T PRK11447 197 RDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQG 276 (1157)
T ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHH
Confidence 9999999987642110 00 00 112
Q ss_pred HHHHhCCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhCCChHHHHHHHhhcCcCCcc-----hH------------HH
Q 036237 196 DGYVKKGEVEVAMKLFDEMPD--R-DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLV-----SW------------NA 255 (689)
Q Consensus 196 ~~~~~~g~~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----~~------------~~ 255 (689)
..+...|++++|+..|++..+ | |...+..+..++.+.|+.++|+..|++..+.++. .+ ..
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 345667899999999988765 3 5678888889999999999999999988763221 11 12
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcC-hhhHHHHHHHHHcccc
Q 036237 256 MINGYMKAGDVDSACELFDDMEI---RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPN-DATLVSALSAVAGLAV 331 (689)
Q Consensus 256 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~ 331 (689)
+...+.+.|++++|+..|+++.. .+...+..+...+...|++++|++.|++.++.. |+ ...+..+...+. .+.
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~~-~~~ 433 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLYR-QQS 433 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH-hcC
Confidence 34567788999999999988764 356677888889999999999999999988643 33 223333332221 223
Q ss_pred hhhHHHHHHHHHHhCC--------ccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHH
Q 036237 332 LNKGRWMHSYIVKNGF--------VVDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQ 400 (689)
Q Consensus 332 ~~~a~~i~~~~~~~g~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 400 (689)
.++|..++..+..... ......+..+...+...|++++|++.|++..+ .+...+..+...|.+.|++++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3444433332211100 00011233344444455555555555554433 122334444444555555555
Q ss_pred HHHHHHHHHHCCCCCCH-HHH--------------------------------------------HHHHHHHhccCcHHH
Q 036237 401 ALDLFNKMCRMGMKPTA-ITF--------------------------------------------IGVLNACSHAGLVND 435 (689)
Q Consensus 401 A~~l~~~m~~~g~~p~~-~t~--------------------------------------------~~ll~a~~~~g~~~~ 435 (689)
|+..|++..+. .|+. ..+ ..+...+...|+.++
T Consensus 514 A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 514 ADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 55555554431 2221 111 123344555666666
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 036237 436 GRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIK 513 (689)
Q Consensus 436 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 513 (689)
|..+++. .+++...+..+.+.|.+.|++++|.+.+++. ...| +...+..++..+...|+.++|+..++++.+
T Consensus 592 A~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 592 AEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 6665541 2344566777888888999999999888876 3344 567888888888889999999999998888
Q ss_pred cCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 036237 514 VAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRG 549 (689)
Q Consensus 514 ~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~ 549 (689)
..|+++..+..++.++...|++++|.++++++....
T Consensus 666 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 666 TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 888888888888899989999999999998887643
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=5.3e-21 Score=226.43 Aligned_cols=511 Identities=13% Similarity=0.069 Sum_probs=373.4
Q ss_pred HHhcCCCchHHHHHHHHHHHhCCCCCchHHHHH-hhcccccCCCCHHHHHHHHhcccC--CCChhhHHHHHHHHHhCCCc
Q 036237 27 ILKFSSTHKETQQLHALSVKTNLIYHSGISSRL-LSLYVDPHINNLHYARSIFDRILQ--HPSLVLYNLLIKCYVFNQRS 103 (689)
Q Consensus 27 ~l~~c~~~~~~~~~~~~~~~~g~~~~~~~~~~l-l~~~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~~ll~~~~~~g~~ 103 (689)
++..-+..+.+...+..+++.. +|+....... ...... .|+.++|...|+++.. +.+...+..+...+...|++
T Consensus 121 ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~--~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~ 197 (1157)
T PRK11447 121 LLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKL--PAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRR 197 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhC--CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCH
Confidence 3444456888888888877643 3343221111 222233 5899999999998875 33555788888899999999
Q ss_pred hHHHHHHHHhHhCCC------------------C--------------CCcccHH---------------------HHHH
Q 036237 104 HEALTLFCDLLDRFL------------------L--------------PDNFTLP---------------------CVIK 130 (689)
Q Consensus 104 ~~a~~~~~~m~~~g~------------------~--------------p~~~t~~---------------------~ll~ 130 (689)
++|++.|+++.+... . |+...+. ....
T Consensus 198 ~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~ 277 (1157)
T PRK11447 198 DEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGL 277 (1157)
T ss_pred HHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHH
Confidence 999999998764321 0 1110000 1122
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC--CCe---ehHHHH-----------
Q 036237 131 GAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD--KDL---VSWNCL----------- 194 (689)
Q Consensus 131 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~---~~~~~l----------- 194 (689)
.+...|++++|...++++++.. +.+...+..|...|.+.|++++|+..|++..+ |+. ..|..+
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 3456788888888888888775 45677888888888899999999988887654 221 123222
Q ss_pred -HHHHHhCCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhCCChHHHHHHHhhcCcC---CcchHHHHHHHHHhcCCHH
Q 036237 195 -IDGYVKKGEVEVAMKLFDEMPD--R-DLFSWTCLVDGFSKCGKVEIAREIFYRMPNR---NLVSWNAMINGYMKAGDVD 267 (689)
Q Consensus 195 -i~~~~~~g~~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~ 267 (689)
...+.+.|++++|+..|++..+ | +...+..+...+...|++++|++.|+++.+. +...+..+...|. .++.+
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~ 435 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPE 435 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHH
Confidence 3456778889999999888865 3 4456777888888899999999999888763 2445566666664 45778
Q ss_pred HHHHHHHhcCCCC------------hHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcC-hhhHHHHHHHHHcccchhh
Q 036237 268 SACELFDDMEIRD------------LITWNSMIAGYELNGRFMEALELLETMLIGDVLPN-DATLVSALSAVAGLAVLNK 334 (689)
Q Consensus 268 ~A~~~~~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~ 334 (689)
+|..+++.+.... ...+..+...+...|++++|++.|++.++. .|+ ...+..+...+...|++++
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHH
Confidence 8888887765321 123555677788899999999999999875 354 4456677788899999999
Q ss_pred HHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCC----h---------hhHHHHHHHHHHcCCHHHH
Q 036237 335 GRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKK----V---------GHWTAMIVGLGMHGMATQA 401 (689)
Q Consensus 335 a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~---------~~~~~li~~~~~~g~~~~A 401 (689)
|...++.+++.. +.+...+..+...+.+.|+.++|...++.+.... . ..+..+...+...|+.++|
T Consensus 514 A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 514 ADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 999999988754 3344555555666778899999999999886421 1 1123456778899999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 036237 402 LDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP-TIEHYGCLVDILCRTGYLEEAKSTIESMP 480 (689)
Q Consensus 402 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 480 (689)
+++++. .+++...+..+...+.+.|++++|+..|+.+.+ ..| +...+..++.+|...|++++|.+.++...
T Consensus 593 ~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~---~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 593 EALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT---REPGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 999872 234455677788899999999999999999984 345 47889999999999999999999999874
Q ss_pred -CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc------hhHHHHHHHHHhcCCcchHHHHHHHHH-hCCCc
Q 036237 481 -MRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTI------GCYVVLSNIYAAAGQWDKVSEVREMMK-KRGFR 551 (689)
Q Consensus 481 -~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~L~~~~~~~g~~~~A~~~~~~m~-~~~~~ 551 (689)
..| +..++..+..++...|++++|...++++++..|+++ ..+..++.++...|++++|...+++.. ..|+.
T Consensus 665 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~ 744 (1157)
T PRK11447 665 ATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGIT 744 (1157)
T ss_pred ccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Confidence 344 456778888889999999999999999999876554 356667999999999999999998875 34554
Q ss_pred cC
Q 036237 552 KD 553 (689)
Q Consensus 552 ~~ 553 (689)
|.
T Consensus 745 ~~ 746 (1157)
T PRK11447 745 PT 746 (1157)
T ss_pred CC
Confidence 33
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=1.9e-21 Score=194.88 Aligned_cols=441 Identities=14% Similarity=0.098 Sum_probs=331.9
Q ss_pred HHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 036237 91 NLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKF 170 (689)
Q Consensus 91 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 170 (689)
..|..-..+.|++.+|.+--...-+.. +.+..+...+-..+....+.+...+--...++.. +.-..+|..+.+.+-..
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHh
Confidence 344445556777777776544333321 1122222222233444444444444333333332 33456777888888888
Q ss_pred CChHHHHHHHhhCCCC---CeehHHHHHHHHHhCCChHHHHHHHhhCCC--CCcchH-HHHHHHHHhCCChHHHHHHHhh
Q 036237 171 GEIDLGRRVFDAMDDK---DLVSWNCLIDGYVKKGEVEVAMKLFDEMPD--RDLFSW-TCLVDGFSKCGKVEIAREIFYR 244 (689)
Q Consensus 171 g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~d~~~~-~~li~~~~~~g~~~~A~~~~~~ 244 (689)
|++++|...++.+.+. .+..|..+..++...|+.+.|.+.|.+..+ |+.+.. +.+....-..|++++|...|.+
T Consensus 130 g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlk 209 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLK 209 (966)
T ss_pred chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHH
Confidence 8888888888877643 456788888888888888888888887766 443332 2344445567888888888877
Q ss_pred cCcCC---cchHHHHHHHHHhcCCHHHHHHHHHhcCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcC-hh
Q 036237 245 MPNRN---LVSWNAMINGYMKAGDVDSACELFDDMEIRD---LITWNSMIAGYELNGRFMEALELLETMLIGDVLPN-DA 317 (689)
Q Consensus 245 ~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~ 317 (689)
.++.. ..+|+.|...+-..|++..|+.-|++..+-| ...|-.|...|...+.+++|+..|.+.+.. .|+ ..
T Consensus 210 Ai~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~ 287 (966)
T KOG4626|consen 210 AIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAV 287 (966)
T ss_pred HHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchh
Confidence 77633 6678888888888888888888888877544 356778888888888888888888887753 454 34
Q ss_pred hHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHH
Q 036237 318 TLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGM 394 (689)
Q Consensus 318 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 394 (689)
.+..+...|...|.++.|..-+++.+... +.-+..|+.|..++-..|++.+|+..+.+... ....+.+.|...|..
T Consensus 288 a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E 366 (966)
T KOG4626|consen 288 AHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYRE 366 (966)
T ss_pred hccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 56666667778888888888888887754 22366788899999999999999999988765 345688899999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHH
Q 036237 395 HGMATQALDLFNKMCRMGMKPTA-ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEA 472 (689)
Q Consensus 395 ~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 472 (689)
.|.+++|..+|....+ +.|.- ..++.|...|-+.|++++|+..|++.+ .+.|+ ...|+.+...|-..|+.+.|
T Consensus 367 ~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A 441 (966)
T KOG4626|consen 367 QGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAA 441 (966)
T ss_pred hccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHH
Confidence 9999999999999887 67774 478999999999999999999999998 68898 68999999999999999999
Q ss_pred HHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHH
Q 036237 473 KSTIESM-PMRPN-FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEV 541 (689)
Q Consensus 473 ~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~ 541 (689)
.+.+.+. .+.|. ....+.|.+.+...|++.+|+..|+.++++.||.+.+|..|+.++---.+|.+-.+.
T Consensus 442 ~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~ 512 (966)
T KOG4626|consen 442 IQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKR 512 (966)
T ss_pred HHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHH
Confidence 9999886 56675 447899999999999999999999999999999999999999888777777664333
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.90 E-value=6.6e-19 Score=199.35 Aligned_cols=500 Identities=11% Similarity=0.034 Sum_probs=314.6
Q ss_pred CCchHHHHHHHHHHHhCCCCCchHHHHHhhcccccCCCCHHHHHHHHhcccC-CCChhhHHHHHHHHHhCCCchHHHHHH
Q 036237 32 STHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQ-HPSLVLYNLLIKCYVFNQRSHEALTLF 110 (689)
Q Consensus 32 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~f~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~ 110 (689)
++.+.+...+...++.... ++.++..|...|.+ .|+.++|+..+++... .|+-..|..++..+ +++.+|..+|
T Consensus 58 Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~--~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~y 131 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRH--FGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTV 131 (987)
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH--CCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHH
Confidence 4577788888888776532 47888899999999 9999999999998765 44433344334333 8888999999
Q ss_pred HHhHhCCCCCCc-ccHHHHHHHH-----HhcCChHHHHHHHHHHHHhCCCCchhHHHHH-HHHHHhcCChHHHHHHHhhC
Q 036237 111 CDLLDRFLLPDN-FTLPCVIKGA-----ARLGAIKEGKQIHGLVFKLGFGFDKFVLSSL-VSMYAKFGEIDLGRRVFDAM 183 (689)
Q Consensus 111 ~~m~~~g~~p~~-~t~~~ll~~~-----~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m 183 (689)
+++.... |+. .++..+.... .+..+.+++.+.++ .......|+..+.... ...|.+.|++++|.+++.++
T Consensus 132 e~l~~~~--P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L 208 (987)
T PRK09782 132 EELLAQQ--KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEA 208 (987)
T ss_pred HHHHHhC--CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 9998763 433 3333332220 11222344444444 2222223334444433 66666677777777766666
Q ss_pred CCC---CeehHHHHHHHHHhC-CChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHhhcCc-----CC-----
Q 036237 184 DDK---DLVSWNCLIDGYVKK-GEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPN-----RN----- 249 (689)
Q Consensus 184 ~~~---~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----- 249 (689)
.+. +..-+..|-..|.+. ++ +++..+++...+.|...+..+...+.+.|+.++|.++++++.. ++
T Consensus 209 ~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~ 287 (987)
T PRK09782 209 RQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWL 287 (987)
T ss_pred HhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHH
Confidence 542 222244444455552 44 5566665543344555666666666666666666666665542 11
Q ss_pred -------------------------cchHHHHHHHHHhcCCHHHHHHHHHhcC---------------------------
Q 036237 250 -------------------------LVSWNAMINGYMKAGDVDSACELFDDME--------------------------- 277 (689)
Q Consensus 250 -------------------------~~~~~~li~~~~~~g~~~~A~~~~~~~~--------------------------- 277 (689)
....-.+++.+.+.++++.++++.+.-+
T Consensus 288 ~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 367 (987)
T PRK09782 288 YLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARL 367 (987)
T ss_pred HHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHH
Confidence 1111122334444444443333322110
Q ss_pred --C--C-ChHHHHHHHHHHHHcCChHHHHHHHHHhccC------------------------------------------
Q 036237 278 --I--R-DLITWNSMIAGYELNGRFMEALELLETMLIG------------------------------------------ 310 (689)
Q Consensus 278 --~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------------------------------------------ 310 (689)
. + +....-.+.-...+.|+.++|..+|++....
T Consensus 368 ~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 447 (987)
T PRK09782 368 LYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQ 447 (987)
T ss_pred HHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchh
Confidence 0 0 1111111111223344444444444443321
Q ss_pred ---------------------CCCc---ChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCC
Q 036237 311 ---------------------DVLP---NDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGS 366 (689)
Q Consensus 311 ---------------------g~~p---~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~ 366 (689)
+..| +...+..+...+.. +..++|...+....... |+......+...+...|+
T Consensus 448 ~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr 524 (987)
T PRK09782 448 RQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVED 524 (987)
T ss_pred HHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCC
Confidence 0111 22223333333333 56666777666665544 343333344555568899
Q ss_pred HHHHHHHHHhcCC--CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHh
Q 036237 367 IESALTVFRAISK--KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI-TFIGVLNACSHAGLVNDGRRYFNMM 443 (689)
Q Consensus 367 ~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~ 443 (689)
+++|...|+++.. ++...+..+...+.+.|+.++|...|++..+.. |+.. .+..+.......|++++|...++..
T Consensus 525 ~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~A 602 (987)
T PRK09782 525 YATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRS 602 (987)
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999987764 344567777888889999999999999988753 4433 3334444555679999999999999
Q ss_pred HHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchh
Q 036237 444 INDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGC 521 (689)
Q Consensus 444 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 521 (689)
. ...|+...|..+..++.+.|++++|...+++. ...| +...+..+..++...|+.++|+..++++++++|+++..
T Consensus 603 L---~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a 679 (987)
T PRK09782 603 L---NIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPAL 679 (987)
T ss_pred H---HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 8 45678889999999999999999999999986 4556 56678888889999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 036237 522 YVVLSNIYAAAGQWDKVSEVREMMKKRG 549 (689)
Q Consensus 522 ~~~L~~~~~~~g~~~~A~~~~~~m~~~~ 549 (689)
+..++.+|...|++++|...+++..+..
T Consensus 680 ~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 680 IRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999987633
No 14
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.88 E-value=1.9e-18 Score=195.62 Aligned_cols=464 Identities=13% Similarity=0.041 Sum_probs=327.1
Q ss_pred CCCHHHHHHHHhcccC--CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHH
Q 036237 68 INNLHYARSIFDRILQ--HPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIH 145 (689)
Q Consensus 68 ~g~~~~A~~~f~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 145 (689)
.|++++|...|+.... +.+..++..+...|.+.|++++|+..+++..+. .|+...|..++..+ ++.++|..++
T Consensus 57 ~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~~y 131 (987)
T PRK09782 57 NNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVTTV 131 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHHHH
Confidence 4999999999998765 345667899999999999999999999999976 56666666655333 8889999999
Q ss_pred HHHHHhCCCCchhHHHHHHHH--------HHhcCChHHHHHHHhhCCCCC--eehHH-HHHHHHHhCCChHHHHHHHhhC
Q 036237 146 GLVFKLGFGFDKFVLSSLVSM--------YAKFGEIDLGRRVFDAMDDKD--LVSWN-CLIDGYVKKGEVEVAMKLFDEM 214 (689)
Q Consensus 146 ~~~~~~g~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~~--~~~~~-~li~~~~~~g~~~~A~~~~~~m 214 (689)
+++++.. +.+..++..+... |.+.+...++++ .+...++ ..+.. .+...|.+.|++++|++++.++
T Consensus 132 e~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L 208 (987)
T PRK09782 132 EELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEA 208 (987)
T ss_pred HHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 9999886 4456666666665 888777777776 3333343 43344 4489999999999999999999
Q ss_pred CCC---CcchHHHHHHHHHh-CCChHHHHHHHhhcCcCCcchHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChHHH-
Q 036237 215 PDR---DLFSWTCLVDGFSK-CGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEI-----RDLITW- 284 (689)
Q Consensus 215 ~~~---d~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~- 284 (689)
.+. +..-...+..+|.+ .++ +.+..++....+.++.+...+.+.|.+.|+.++|.+++.+++. ++..+|
T Consensus 209 ~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~ 287 (987)
T PRK09782 209 RQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWL 287 (987)
T ss_pred HhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHH
Confidence 873 33345666677887 477 8888888876667889999999999999999999999999862 111111
Q ss_pred -----------------------------HHHHHHHHHcCChHHHHHH-----------------------------HHH
Q 036237 285 -----------------------------NSMIAGYELNGRFMEALEL-----------------------------LET 306 (689)
Q Consensus 285 -----------------------------~~li~~~~~~g~~~~A~~~-----------------------------~~~ 306 (689)
-.++..+.+.++++-+.++ ++.
T Consensus 288 ~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 367 (987)
T PRK09782 288 YLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARL 367 (987)
T ss_pred HHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHH
Confidence 1123444555555544433 222
Q ss_pred hccCCCCc-ChhhHHHHHHHHHcccchhhHHHHHHHHHH-----------------------------------------
Q 036237 307 MLIGDVLP-NDATLVSALSAVAGLAVLNKGRWMHSYIVK----------------------------------------- 344 (689)
Q Consensus 307 m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~----------------------------------------- 344 (689)
|.+.. | +....-.+---....|+.++|.+++.....
T Consensus 368 ~y~~~--~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 445 (987)
T PRK09782 368 LYQQE--PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLA 445 (987)
T ss_pred HHhcC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccc
Confidence 22110 1 000000000011223333333333332221
Q ss_pred ---------------------h-CC-cc--chhHHhHHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHH--HHcCC
Q 036237 345 ---------------------N-GF-VV--DGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGL--GMHGM 397 (689)
Q Consensus 345 ---------------------~-g~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~--~~~g~ 397 (689)
. +. ++ +...+..+..++.. |+.++|...|.+.....+..++.+..++ .+.|+
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr 524 (987)
T PRK09782 446 EQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVED 524 (987)
T ss_pred hhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCC
Confidence 0 11 22 44555556666655 6777777766665543333445444444 57899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHH
Q 036237 398 ATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTI 476 (689)
Q Consensus 398 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~ 476 (689)
+++|+..|+++... .|+...+..+..++.+.|+.++|..+++...+ ..|+ ...+..+...+.+.|++++|...+
T Consensus 525 ~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~---l~P~~~~l~~~La~~l~~~Gr~~eAl~~~ 599 (987)
T PRK09782 525 YATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQ---RGLGDNALYWWLHAQRYIPGQPELALNDL 599 (987)
T ss_pred HHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCccHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999987653 45555566677788889999999999998884 2344 334444444555669999999999
Q ss_pred HhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 477 ESM-PMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 477 ~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
++. ...|+...|..+...+.+.|+.++|+..++++++++|+++..+..++.++...|++++|...+++..+.
T Consensus 600 ~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 600 TRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 886 467888899999999999999999999999999999999999999999999999999999999988764
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=2.4e-20 Score=187.14 Aligned_cols=409 Identities=15% Similarity=0.166 Sum_probs=332.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCC---CeehHHHHHHHHHhCCChHH
Q 036237 130 KGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK---DLVSWNCLIDGYVKKGEVEV 206 (689)
Q Consensus 130 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~ 206 (689)
.-..+.|++++|++--..+-..+ +.+....-.+-..|....+++....--....+. -..+|..+...+-..|++++
T Consensus 56 h~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~ 134 (966)
T KOG4626|consen 56 HRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQD 134 (966)
T ss_pred HHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHH
Confidence 33446788888877444333322 222233333345566666666544432222222 34578899999999999999
Q ss_pred HHHHHhhCCC--C-CcchHHHHHHHHHhCCChHHHHHHHhhcCcCCcchH---HHHHHHHHhcCCHHHHHHHHHhcCCC-
Q 036237 207 AMKLFDEMPD--R-DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSW---NAMINGYMKAGDVDSACELFDDMEIR- 279 (689)
Q Consensus 207 A~~~~~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~~- 279 (689)
|+.+++.+.+ | ....|..+..++...|+.+.|.+.|...++-++..+ +.+.+.....|++++|...+-+..+.
T Consensus 135 al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q 214 (966)
T KOG4626|consen 135 ALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQ 214 (966)
T ss_pred HHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhC
Confidence 9999999976 3 457899999999999999999999999988665433 45667778889999999988876643
Q ss_pred --ChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcC-hhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhH
Q 036237 280 --DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPN-DATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTL 356 (689)
Q Consensus 280 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~ 356 (689)
=.+.|+.|...+-..|+...|+..|++..+. .|+ ...|..+...+...+.++.|..-+..+.... +....++..
T Consensus 215 p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gN 291 (966)
T KOG4626|consen 215 PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGN 291 (966)
T ss_pred CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccchhhccc
Confidence 3478999999999999999999999999873 454 3467777778888888888888877776543 234667777
Q ss_pred HHhhHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCc
Q 036237 357 LIQMYSKCGSIESALTVFRAISKK---KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA-ITFIGVLNACSHAGL 432 (689)
Q Consensus 357 li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~ 432 (689)
|...|..+|.++.|+..+++..+. -...|+.|..++-..|+..+|...+.+... +.|+. ...+.|...+...|.
T Consensus 292 la~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni~~E~~~ 369 (966)
T KOG4626|consen 292 LACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNIYREQGK 369 (966)
T ss_pred eEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcc
Confidence 888999999999999999998763 356899999999999999999999999988 56774 478899999999999
Q ss_pred HHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChHHHHHHHH
Q 036237 433 VNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESM-PMRPNFV-IWMSLLSGARNHGNKDIGEYAAN 509 (689)
Q Consensus 433 ~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~ 509 (689)
+++|..+|.... .+.|. ....+.|...|...|++++|...+++. .++|+.. .++.+...|...|+...|.+.+.
T Consensus 370 ~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~ 446 (966)
T KOG4626|consen 370 IEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYT 446 (966)
T ss_pred chHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHH
Confidence 999999999988 46677 578899999999999999999999886 6888754 89999999999999999999999
Q ss_pred HHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 510 NLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 510 ~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
+++.++|.-..++..|+.+|-.+|+..+|..-++...+
T Consensus 447 rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 447 RAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 99999999999999999999999999999999998776
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.85 E-value=8.2e-18 Score=187.25 Aligned_cols=419 Identities=12% Similarity=-0.004 Sum_probs=245.0
Q ss_pred HHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 036237 92 LLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFG 171 (689)
Q Consensus 92 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 171 (689)
.....+.+.|++++|++.|++.++. .|+...|..+..++...|++++|...+..+++.. +.+...+..+..+|...|
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence 4455566667777777777766653 4555566666666666777777777777766654 334556666666777777
Q ss_pred ChHHHHHHHhhCCCCC---eehHHHHHHHHHhCCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHhhcCcC
Q 036237 172 EIDLGRRVFDAMDDKD---LVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR 248 (689)
Q Consensus 172 ~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 248 (689)
++++|..-|......+ ......++.-+........+...++.-. ++..++..+...+ .....+.+..-+....+.
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGNYL-QSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHHHH-HHccCCcchhhhhccccc
Confidence 7777766554332111 1111111111111111122222222111 1222222222211 111111111111110000
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHH---HHHcCChHHHHHHHHHhccCC-CCcC-hhhHHHHH
Q 036237 249 NLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAG---YELNGRFMEALELLETMLIGD-VLPN-DATLVSAL 323 (689)
Q Consensus 249 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g-~~p~-~~t~~~ll 323 (689)
+... ...+..+... ....+++++|++.|++....+ ..|+ ...+..+.
T Consensus 287 ~~~~----------------------------~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg 338 (615)
T TIGR00990 287 DEET----------------------------GNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRG 338 (615)
T ss_pred cccc----------------------------ccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence 0000 0001000000 012245555555555555432 1222 22334444
Q ss_pred HHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHH
Q 036237 324 SAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQ 400 (689)
Q Consensus 324 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 400 (689)
..+...|++++|...+..+++.. +.....+..+...+...|++++|...|+++.. .+...|..+...|...|++++
T Consensus 339 ~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 417 (615)
T TIGR00990 339 TFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQ 417 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 44455556666666665555442 12344556667777777888888888876654 356778888888889999999
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 036237 401 ALDLFNKMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM 479 (689)
Q Consensus 401 A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 479 (689)
|+..|++..+ +.|+ ...+..+..++.+.|++++|+..|+...+ ..+.+...++.+..+|...|++++|.+.|++.
T Consensus 418 A~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~A 493 (615)
T TIGR00990 418 AGKDYQKSID--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTA 493 (615)
T ss_pred HHHHHHHHHH--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999998887 4555 44666777888889999999999998874 22334678888999999999999999998885
Q ss_pred -CCCCC-------HH-HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 480 -PMRPN-------FV-IWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 480 -~~~p~-------~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
...|+ .. .++..+..+...|++++|...++++++++|++..++..++.+|...|++++|.+.+++..+.
T Consensus 494 l~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 494 IELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 33332 11 12222223344699999999999999999999889999999999999999999999988653
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=1.6e-18 Score=183.05 Aligned_cols=289 Identities=13% Similarity=0.103 Sum_probs=197.7
Q ss_pred HHhcCCHHHHHHHHHhcCCC---ChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcC---hhhHHHHHHHHHcccchh
Q 036237 260 YMKAGDVDSACELFDDMEIR---DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPN---DATLVSALSAVAGLAVLN 333 (689)
Q Consensus 260 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~~~~~ 333 (689)
+...|++++|...|.++.+. +..+|..+...+...|++++|+.+++.+...+..++ ...+..+...+...|+++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 34444555555555554422 233455555555555555555555555554321111 123444455555555555
Q ss_pred hHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCC--------hhhHHHHHHHHHHcCCHHHHHHHH
Q 036237 334 KGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKK--------VGHWTAMIVGLGMHGMATQALDLF 405 (689)
Q Consensus 334 ~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~l~ 405 (689)
.|..++..+.+.. +.+..+++.++..|.+.|++++|.+.|+.+.+.+ ...|..++..+.+.|++++|+..|
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 5555555555432 2345566666777777777777777777665421 113556777788889999999999
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 036237 406 NKMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT--IEHYGCLVDILCRTGYLEEAKSTIESM-PM 481 (689)
Q Consensus 406 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 481 (689)
+++.+. .|+ ...+..+...+.+.|++++|.++|+++... .|+ ...++.++.+|.+.|++++|...++++ ..
T Consensus 204 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 204 KKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 988874 344 446777778888899999999999988842 343 456788889999999999999999886 35
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHh---cCCcchHHHHHHHHHhCCCccCCc
Q 036237 482 RPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAA---AGQWDKVSEVREMMKKRGFRKDPG 555 (689)
Q Consensus 482 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~ 555 (689)
.|+...+..++..+.+.|++++|...++++++..|+++ .+..+...+.. .|+.+++..++++|.+++++++|.
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 67777778889999999999999999999999999775 55555555543 569999999999999999999985
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=7.4e-19 Score=185.62 Aligned_cols=299 Identities=15% Similarity=0.088 Sum_probs=166.8
Q ss_pred HHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhc
Q 036237 94 IKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFD---KFVLSSLVSMYAKF 170 (689)
Q Consensus 94 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~ 170 (689)
...+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+++.+..++ ..++..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 334556677777888888877653 12334666666777777777777777777766432211 23556666777777
Q ss_pred CChHHHHHHHhhCCC---CCeehHHHHHHHHHhCCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHhhcCc
Q 036237 171 GEIDLGRRVFDAMDD---KDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPN 247 (689)
Q Consensus 171 g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 247 (689)
|++++|..+|+++.+ .+..+++.++..+.+.|++++|.+.|+.+.+.+.......
T Consensus 121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---------------------- 178 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE---------------------- 178 (389)
T ss_pred CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH----------------------
Confidence 777777777776654 2344566666666666666666666665543211000000
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHH
Q 036237 248 RNLVSWNAMINGYMKAGDVDSACELFDDMEI---RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS 324 (689)
Q Consensus 248 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 324 (689)
....+..+...+.+.|++++|.+.|+++.+ .+...+..+...|.+.|++++|+++|+++...+......++..+..
T Consensus 179 -~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~ 257 (389)
T PRK11788 179 -IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLME 257 (389)
T ss_pred -HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHH
Confidence 001233444555556666666666665542 1344566666777777777777777777765432222234445555
Q ss_pred HHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC--CChhhHHHHHHHHHH---cCCHH
Q 036237 325 AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK--KKVGHWTAMIVGLGM---HGMAT 399 (689)
Q Consensus 325 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~---~g~~~ 399 (689)
++...|++++|...+..+.+.. |+...+..++..+.+.|++++|.++|+++.+ |+...++.++..+.. .|+.+
T Consensus 258 ~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~ 335 (389)
T PRK11788 258 CYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAK 335 (389)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccch
Confidence 5555555555555555554442 2333335555555566666666665555443 444455555554443 34555
Q ss_pred HHHHHHHHHHHCCCCCCHH
Q 036237 400 QALDLFNKMCRMGMKPTAI 418 (689)
Q Consensus 400 ~A~~l~~~m~~~g~~p~~~ 418 (689)
+++.+|++|.+.+++|++.
T Consensus 336 ~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 336 ESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hHHHHHHHHHHHHHhCCCC
Confidence 6666666666555554443
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.81 E-value=1.6e-16 Score=180.21 Aligned_cols=398 Identities=9% Similarity=-0.015 Sum_probs=211.9
Q ss_pred HHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 036237 92 LLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFG 171 (689)
Q Consensus 92 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 171 (689)
-.+......|+.++|++++.+..... +.+...+..+..++...|++++|..+++.+++.. +.+...+..+..++.+.|
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g 97 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence 33445556677777777777766421 2233346666666677777777777777766653 344555666666677777
Q ss_pred ChHHHHHHHhhCCC--C-CeehHHHHHHHHHhCCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhCCChHHHHHHHhhc
Q 036237 172 EIDLGRRVFDAMDD--K-DLVSWNCLIDGYVKKGEVEVAMKLFDEMPD--R-DLFSWTCLVDGFSKCGKVEIAREIFYRM 245 (689)
Q Consensus 172 ~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~~~~~~ 245 (689)
++++|...+++..+ | +.. |..+...+...|+.++|+..++++.+ | +...+..+..++...|..+.|++.++..
T Consensus 98 ~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 98 QYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence 77777777766542 2 233 55666666666666666666666654 2 2233444455555555555565555544
Q ss_pred CcCCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHH-----HHcCCh---HHHHHHHHHhccC-CCCcCh
Q 036237 246 PNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGY-----ELNGRF---MEALELLETMLIG-DVLPND 316 (689)
Q Consensus 246 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~-----~~~g~~---~~A~~~~~~m~~~-g~~p~~ 316 (689)
.. .+.....+ . ......++..+ ...+++ ++|++.++.+.+. ...|+.
T Consensus 177 ~~-~p~~~~~l--------~---------------~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~ 232 (765)
T PRK10049 177 NL-TPAEKRDL--------E---------------ADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDA 232 (765)
T ss_pred CC-CHHHHHHH--------H---------------HHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCcc
Confidence 43 11100000 0 00011111111 111222 5566666666532 112221
Q ss_pred h-hHHH----HHHHHHcccchhhHHHHHHHHHHhCCc-cchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCC-------hh
Q 036237 317 A-TLVS----ALSAVAGLAVLNKGRWMHSYIVKNGFV-VDGVLGTLLIQMYSKCGSIESALTVFRAISKKK-------VG 383 (689)
Q Consensus 317 ~-t~~~----ll~a~~~~~~~~~a~~i~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~ 383 (689)
. .+.. .+.++...+++++|+..++.+.+.+.+ |+. ....+...|...|++++|+..|+++...+ ..
T Consensus 233 ~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~ 311 (765)
T PRK10049 233 TADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDE 311 (765)
T ss_pred chHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChH
Confidence 1 1111 122334445666666666666555421 111 11224556666666666666666654321 12
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----------CCCCH---HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC
Q 036237 384 HWTAMIVGLGMHGMATQALDLFNKMCRMG-----------MKPTA---ITFIGVLNACSHAGLVNDGRRYFNMMINDYGI 449 (689)
Q Consensus 384 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----------~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 449 (689)
.+..+..++.+.|++++|+++++++.... -.|+. ..+..+...+...|++++|+..++++.. ..
T Consensus 312 ~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~ 389 (765)
T PRK10049 312 ELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--NA 389 (765)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hC
Confidence 34445556667777777777777766531 01221 1233444556666777777777766663 22
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc
Q 036237 450 EPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRPN-FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTI 519 (689)
Q Consensus 450 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 519 (689)
+.+...+..+..++...|++++|++.+++. ...|+ ...+..+...+...|++++|+..++++++..|+++
T Consensus 390 P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 390 PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 233556666666666777777777766665 23443 34555555566666677777777777777777665
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.81 E-value=3.3e-16 Score=177.62 Aligned_cols=390 Identities=9% Similarity=0.002 Sum_probs=250.6
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC---CCCeehHHHHHHHHHh
Q 036237 124 TLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD---DKDLVSWNCLIDGYVK 200 (689)
Q Consensus 124 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~ 200 (689)
-..-.+......|+.++|.+++....... +.+...+..+...+.+.|++++|..+|++.. ..+...+..+...+..
T Consensus 17 ~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 17 QIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 33444455556666666666666665422 3344456666666666666666666666643 2234445555556666
Q ss_pred CCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhCCChHHHHHHHhhcCcCCcchHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036237 201 KGEVEVAMKLFDEMPD--R-DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDME 277 (689)
Q Consensus 201 ~g~~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 277 (689)
.|+.++|+..+++..+ | +.. +..+..++...|+.++|+..++++.+.+
T Consensus 96 ~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~---------------------------- 146 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA---------------------------- 146 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------------------
Confidence 6666666666665543 2 223 4455555555555555555555554311
Q ss_pred CCChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChh------hHHHHHHHH-----Hcccch---hhHHHHHHHHH
Q 036237 278 IRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDA------TLVSALSAV-----AGLAVL---NKGRWMHSYIV 343 (689)
Q Consensus 278 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------t~~~ll~a~-----~~~~~~---~~a~~i~~~~~ 343 (689)
..+...+..+...+...|..++|++.++.... .|+.. .....+... ...+.+ ++|.+.++.+.
T Consensus 147 P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll 223 (765)
T PRK10049 147 PQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALE 223 (765)
T ss_pred CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHH
Confidence 11333344444455555555555555554432 12210 001111111 111223 66777777777
Q ss_pred Hh-CCccchh--HHhH---HHhhHHhcCCHHHHHHHHHhcCCCC---hh-hHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 036237 344 KN-GFVVDGV--LGTL---LIQMYSKCGSIESALTVFRAISKKK---VG-HWTAMIVGLGMHGMATQALDLFNKMCRMGM 413 (689)
Q Consensus 344 ~~-g~~~~~~--~~~~---li~~~~~~g~~~~A~~~~~~~~~~~---~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 413 (689)
+. ...|+.. .... .+.++...|++++|++.|+.+.+.+ +. .-..+...|...|++++|+..|+++.+..
T Consensus 224 ~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~- 302 (765)
T PRK10049 224 ALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHP- 302 (765)
T ss_pred hhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcC-
Confidence 54 2222221 1111 1234457799999999999998642 21 12225778999999999999999987643
Q ss_pred CCC-----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC----------CCCC---hhHHHHHHHHHHhcCCHHHHHHH
Q 036237 414 KPT-----AITFIGVLNACSHAGLVNDGRRYFNMMINDYG----------IEPT---IEHYGCLVDILCRTGYLEEAKST 475 (689)
Q Consensus 414 ~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~ 475 (689)
|. ......+..++...|++++|..+++.+..... -.|+ ...+..+..++...|++++|++.
T Consensus 303 -p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~ 381 (765)
T PRK10049 303 -ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMR 381 (765)
T ss_pred -CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 32 23456667788999999999999999985311 1123 23456788899999999999999
Q ss_pred HHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 476 IESMP-MRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 476 ~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
++++. ..| +...+..+...+...|+++.|+..++++++++|+++..+..++..+...|+|++|..+++++.+.
T Consensus 382 l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 382 ARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 99972 334 67789999999999999999999999999999999999999999999999999999999999763
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.80 E-value=1.1e-16 Score=177.47 Aligned_cols=322 Identities=8% Similarity=0.031 Sum_probs=225.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhCCChHHHHHHHhhcCc--C-CcchHHHHHHHHHhcC
Q 036237 191 WNCLIDGYVKKGEVEVAMKLFDEMPD--R-DLFSWTCLVDGFSKCGKVEIAREIFYRMPN--R-NLVSWNAMINGYMKAG 264 (689)
Q Consensus 191 ~~~li~~~~~~g~~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g 264 (689)
.-.++..+.+.|+.++|+.+++.... | +...+..++.++...|++++|...++++.+ | +...+..+...+...|
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Confidence 44455666667777777777666643 2 334455555566667777777777777665 2 2456666777777777
Q ss_pred CHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHH
Q 036237 265 DVDSACELFDDMEI---RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSY 341 (689)
Q Consensus 265 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~ 341 (689)
++++|...|++... .+...|..+...+...|++++|...++.+.... |+.......+..+...|++++|...+..
T Consensus 125 ~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 125 QYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATCLSFLNKSRLPEDHDLARA 202 (656)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77777777777653 245677777777788888888888777765543 2222222222346667778888777777
Q ss_pred HHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHH----HHHHHHHHHHCCCC
Q 036237 342 IVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQ----ALDLFNKMCRMGMK 414 (689)
Q Consensus 342 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g~~ 414 (689)
+.+....++......+...+.+.|++++|.+.|+++.. .+...+..+...|.+.|++++ |+..|++..+ ..
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~ 280 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ--FN 280 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--hC
Confidence 76654334444445556777888888888888887764 355677888888888888875 7888888887 45
Q ss_pred CC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHH-HHH
Q 036237 415 PT-AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESMP-MRPNFVI-WMS 490 (689)
Q Consensus 415 p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~-~~~ 490 (689)
|+ ...+..+...+...|++++|...++.... ..|+ ...+..+...|.+.|++++|...++++. ..|+... +..
T Consensus 281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~ 357 (656)
T PRK15174 281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRY 357 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHH
Confidence 55 44777888888889999999999988874 3454 5667778888999999999999888763 4565544 344
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCc
Q 036237 491 LLSGARNHGNKDIGEYAANNLIKVAPDTI 519 (689)
Q Consensus 491 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 519 (689)
+..++...|+.++|...++++++..|++.
T Consensus 358 ~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 358 AAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 56678888999999999999999888753
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.79 E-value=2.3e-15 Score=167.69 Aligned_cols=422 Identities=12% Similarity=0.006 Sum_probs=262.4
Q ss_pred HHhhcccccCCCCHHHHHHHHhcccC-CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCC-CcccHHHHHHHHHhc
Q 036237 58 RLLSLYVDPHINNLHYARSIFDRILQ-HPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLP-DNFTLPCVIKGAARL 135 (689)
Q Consensus 58 ~ll~~~~~~~~g~~~~A~~~f~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~ 135 (689)
.+-..|.+ .|+++.|...|++... .|+...|..+..+|.+.|++++|++.+...++.. | +...+..+..++...
T Consensus 132 ~~G~~~~~--~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 132 EKGNKAYR--NKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHH--cCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHc
Confidence 34455666 7999999999998765 6788889999999999999999999999998763 4 445788888899999
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCeehHHHHHHHHHhCCChHHHHHHHhhCC
Q 036237 136 GAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP 215 (689)
Q Consensus 136 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 215 (689)
|++++|..-+..+...+-..+... ..++.-+........+...++.-+ .+..++..+.. |........+..-+..-.
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQS-AQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHH-HHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhhccc
Confidence 999999998877665542222222 222222222112344444444332 23344443332 322222222222122111
Q ss_pred CCCc---chHHHHHHH---HHhCCChHHHHHHHhhcCcCCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHH
Q 036237 216 DRDL---FSWTCLVDG---FSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIA 289 (689)
Q Consensus 216 ~~d~---~~~~~li~~---~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 289 (689)
+-+. ..+..+... ....+++++|.+.|+...+.+. ....+...|+.+..
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~-------------------------~~~~~a~a~~~lg~ 339 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGK-------------------------LGEKEAIALNLRGT 339 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCC-------------------------CChhhHHHHHHHHH
Confidence 1111 111111110 0122445555555544432110 00112344555555
Q ss_pred HHHHcCChHHHHHHHHHhccCCCCcC-hhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHH
Q 036237 290 GYELNGRFMEALELLETMLIGDVLPN-DATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIE 368 (689)
Q Consensus 290 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 368 (689)
.+...|++++|+..|++.+.. .|+ ...|..+...+...|++++|...+..+++.. +.+..++..+...|...|+++
T Consensus 340 ~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~ 416 (615)
T TIGR00990 340 FKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFA 416 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 566666666666666665543 233 2344555555556666666666666665543 334566777777888888888
Q ss_pred HHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 036237 369 SALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMI 444 (689)
Q Consensus 369 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 444 (689)
+|...|++... .+...|..+...+.+.|++++|+..|++..+. .|+ ...+..+...+...|++++|+..|+...
T Consensus 417 ~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al 494 (615)
T TIGR00990 417 QAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAI 494 (615)
T ss_pred HHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 88888887764 34566777888888889999999999888763 454 5577778888888899999999988877
Q ss_pred HhcCCCCCh--------hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 036237 445 NDYGIEPTI--------EHYGCLVDILCRTGYLEEAKSTIESM-PMRPN-FVIWMSLLSGARNHGNKDIGEYAANNLIKV 514 (689)
Q Consensus 445 ~~~~~~p~~--------~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 514 (689)
. +.|+. ..++.....+...|++++|.+++++. ...|+ ...+..+...+...|++++|+..+++++++
T Consensus 495 ~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 495 E---LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred h---cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3 33321 11222223344568999999999875 44554 457888899999999999999999999988
Q ss_pred CCCCc
Q 036237 515 APDTI 519 (689)
Q Consensus 515 ~p~~~ 519 (689)
.+...
T Consensus 572 ~~~~~ 576 (615)
T TIGR00990 572 ARTEG 576 (615)
T ss_pred hccHH
Confidence 77543
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.78 E-value=6.5e-16 Score=171.51 Aligned_cols=341 Identities=9% Similarity=0.001 Sum_probs=273.8
Q ss_pred hCCChHHHHHHHhhCCC------CCcchHHHHHHHHHhCCChHHHHHHHhhcCc---CCcchHHHHHHHHHhcCCHHHHH
Q 036237 200 KKGEVEVAMKLFDEMPD------RDLFSWTCLVDGFSKCGKVEIAREIFYRMPN---RNLVSWNAMINGYMKAGDVDSAC 270 (689)
Q Consensus 200 ~~g~~~~A~~~~~~m~~------~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 270 (689)
+..+++.-.-.|..-.+ .+......++..+.+.|+.++|..+++.... .+......++......|++++|.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~ 96 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVL 96 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHH
Confidence 44455554445555443 1334556677888999999999999998875 33566677777888899999999
Q ss_pred HHHHhcCC---CChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcC-hhhHHHHHHHHHcccchhhHHHHHHHHHHhC
Q 036237 271 ELFDDMEI---RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPN-DATLVSALSAVAGLAVLNKGRWMHSYIVKNG 346 (689)
Q Consensus 271 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 346 (689)
..|+++.. .+...|..+...+.+.|++++|+..|+++.+. .|+ ...+..+...+...|++++|...+..+....
T Consensus 97 ~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 97 QVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 99999874 25678899999999999999999999999874 454 4566778888999999999999999887765
Q ss_pred CccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCC----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHH
Q 036237 347 FVVDGVLGTLLIQMYSKCGSIESALTVFRAISKK----KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT-AITFI 421 (689)
Q Consensus 347 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~ 421 (689)
..+. ..+..+ ..+...|++++|...++.+... +...+..+...+.+.|++++|+..|+++.+. .|+ ...+.
T Consensus 175 P~~~-~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~ 250 (656)
T PRK15174 175 PPRG-DMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRR 250 (656)
T ss_pred CCCH-HHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHH
Confidence 4333 333333 3478899999999999987653 2334455677889999999999999999985 454 55677
Q ss_pred HHHHHHhccCcHHH----HHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 036237 422 GVLNACSHAGLVND----GRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSG 494 (689)
Q Consensus 422 ~ll~a~~~~g~~~~----a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~ 494 (689)
.+..++...|++++ |...|+.+.. ..|+ ...+..+...|.+.|++++|...+++. ...| +...+..+..+
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~ 327 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 78889999999986 8999999983 4555 678999999999999999999999986 3445 45678888999
Q ss_pred HHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 036237 495 ARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRG 549 (689)
Q Consensus 495 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~ 549 (689)
+...|++++|+..++++++..|+++..+..++.++...|++++|...+++..+..
T Consensus 328 l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999987777778899999999999999999987643
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.76 E-value=2.1e-14 Score=159.78 Aligned_cols=429 Identities=11% Similarity=0.029 Sum_probs=223.7
Q ss_pred HHhCCCchHHHHHHHHhHhCCCCCCcc-cHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHH
Q 036237 97 YVFNQRSHEALTLFCDLLDRFLLPDNF-TLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDL 175 (689)
Q Consensus 97 ~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 175 (689)
..+.|++..|++.|++..+. .|+.. ....++..+...|+.++|..++++.+... .........+...|...|++++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKA--GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhh--CccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 45677777777777777765 34431 22266666667777777777777776111 1222333333556777777777
Q ss_pred HHHHHhhCCCC---CeehHHHHHHHHHhCCChHHHHHHHhhCCCC--CcchHHHHHHHHHhCCChHHHHHHHhhcCc--C
Q 036237 176 GRRVFDAMDDK---DLVSWNCLIDGYVKKGEVEVAMKLFDEMPDR--DLFSWTCLVDGFSKCGKVEIAREIFYRMPN--R 248 (689)
Q Consensus 176 A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--d~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~ 248 (689)
|.++|+++.+. |...+..++..|...++.++|++.++++... +...+..++..+...++..+|++.++++.+ |
T Consensus 121 Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P 200 (822)
T PRK14574 121 ALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAP 200 (822)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCC
Confidence 77777777642 3445556666777777777777777777653 323332232233334445457777776665 2
Q ss_pred -CcchHHHHHHHHHhcCCHHHHHHHHHhcCCC-ChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHH
Q 036237 249 -NLVSWNAMINGYMKAGDVDSACELFDDMEIR-DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV 326 (689)
Q Consensus 249 -~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 326 (689)
+...+..+.....+.|-...|.++..+-+.- +...+.-+ . .+.|.+..+.. ..|+..- -
T Consensus 201 ~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l-~-------~~~~a~~vr~a----~~~~~~~-------~ 261 (822)
T PRK14574 201 TSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL-E-------RDAAAEQVRMA----VLPTRSE-------T 261 (822)
T ss_pred CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH-H-------HHHHHHHHhhc----ccccccc-------h
Confidence 2455566666666666666666666654421 11111100 0 00010100000 0000000 0
Q ss_pred HcccchhhHHHHHHHHHHh-CC-ccchhH-HhH---HHhhHHhcCCHHHHHHHHHhcCCCC--h--hhHHHHHHHHHHcC
Q 036237 327 AGLAVLNKGRWMHSYIVKN-GF-VVDGVL-GTL---LIQMYSKCGSIESALTVFRAISKKK--V--GHWTAMIVGLGMHG 396 (689)
Q Consensus 327 ~~~~~~~~a~~i~~~~~~~-g~-~~~~~~-~~~---li~~~~~~g~~~~A~~~~~~~~~~~--~--~~~~~li~~~~~~g 396 (689)
.+....+.|..-++.+... +- ++.... ..+ .+-++.+.|+..++++.|+.+.... + .+-.++.++|...+
T Consensus 262 ~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~ 341 (822)
T PRK14574 262 ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRR 341 (822)
T ss_pred hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcC
Confidence 0000112222222222221 11 111111 112 2234455666666666666666422 1 23345566666666
Q ss_pred CHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC----------CCCC---hhHHHH
Q 036237 397 MATQALDLFNKMCRMG-----MKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYG----------IEPT---IEHYGC 458 (689)
Q Consensus 397 ~~~~A~~l~~~m~~~g-----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~ 458 (689)
++++|+.+|++..... ..++......|..++..++++++|..+++.+.+... -.|+ ...+..
T Consensus 342 ~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l 421 (822)
T PRK14574 342 LPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTL 421 (822)
T ss_pred CcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHH
Confidence 6666666666664422 111222244566666666666666666666653111 0122 233444
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcc
Q 036237 459 LVDILCRTGYLEEAKSTIESMP-MRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWD 536 (689)
Q Consensus 459 li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~ 536 (689)
++..+...|++.+|++.++++- ..| |...+..+...+...|++..|+..++.+..++|++..+...++..+...|+|+
T Consensus 422 ~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~ 501 (822)
T PRK14574 422 LVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWH 501 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHH
Confidence 5566666677777776666652 223 55666666666666777777777776666666766666666666666667777
Q ss_pred hHHHHHHHHHh
Q 036237 537 KVSEVREMMKK 547 (689)
Q Consensus 537 ~A~~~~~~m~~ 547 (689)
+|..+.+.+.+
T Consensus 502 ~A~~~~~~l~~ 512 (822)
T PRK14574 502 QMELLTDDVIS 512 (822)
T ss_pred HHHHHHHHHHh
Confidence 77666655544
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.76 E-value=7.8e-15 Score=155.84 Aligned_cols=523 Identities=11% Similarity=0.046 Sum_probs=352.7
Q ss_pred ccCCccchHHHHhcCCC-----chHHHHHHHHHHH--hCCCCCchHHHHHhhcccccCCCCHHHHHHHHhcccCCCChhh
Q 036237 17 QHLPSRLHWNILKFSST-----HKETQQLHALSVK--TNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSLVL 89 (689)
Q Consensus 17 ~~~p~~~~~~~l~~c~~-----~~~~~~~~~~~~~--~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~f~~~~~~~~~~~ 89 (689)
...|+.+.+-+-++|-. ...+..+|...+. ....||+.+... ..+.+ +|..+.|+..|.+.. +-|+..
T Consensus 158 ~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig--~Cf~k--l~~~~~a~~a~~ral-qLdp~~ 232 (1018)
T KOG2002|consen 158 KQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIG--HCFWK--LGMSEKALLAFERAL-QLDPTC 232 (1018)
T ss_pred hhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhh--hHHHh--ccchhhHHHHHHHHH-hcChhh
Confidence 34455555445566632 4556666666433 355677766543 34456 788888888887776 333322
Q ss_pred HHHHHH---HHHhCC---CchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC--chhHHH
Q 036237 90 YNLLIK---CYVFNQ---RSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF--DKFVLS 161 (689)
Q Consensus 90 ~~~ll~---~~~~~g---~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~ 161 (689)
-++++. .-.... .+..++.++...-... .-|+...+.|.+-+.-.|+++.+..+...++...... -...|-
T Consensus 233 v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y 311 (1018)
T KOG2002|consen 233 VSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFY 311 (1018)
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 222222 111222 3445555555544432 2366677777788888888888888888887765211 123466
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCC--CC--eehHHHHHHHHHhCCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhCC-
Q 036237 162 SLVSMYAKFGEIDLGRRVFDAMDD--KD--LVSWNCLIDGYVKKGEVEVAMKLFDEMPD--R-DLFSWTCLVDGFSKCG- 233 (689)
Q Consensus 162 ~li~~~~~~g~~~~A~~~~~~m~~--~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~g- 233 (689)
-+..+|...|++++|...|.+... +| +..+--+...|.+.|+++.+...|+...+ | +..|...+...|+..+
T Consensus 312 ~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~ 391 (1018)
T KOG2002|consen 312 QLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAK 391 (1018)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhh
Confidence 678888888999999888877654 22 23345577888888999988888888865 3 3456666666676664
Q ss_pred ---ChHHHHHHHhhcCcCC---cchHHHHHHHHHhcCC------HHHHHHHHHhc-CCCChHHHHHHHHHHHHcCChHHH
Q 036237 234 ---KVEIAREIFYRMPNRN---LVSWNAMINGYMKAGD------VDSACELFDDM-EIRDLITWNSMIAGYELNGRFMEA 300 (689)
Q Consensus 234 ---~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~------~~~A~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A 300 (689)
..+.|..++.+..++. ...|-.+..+|-...- +..|..++..- ....+...|.+...+...|++++|
T Consensus 392 ~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A 471 (1018)
T KOG2002|consen 392 KQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKA 471 (1018)
T ss_pred hhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHH
Confidence 4577777777777643 4455555555544332 23344333322 234667889999999999999999
Q ss_pred HHHHHHhccC---CCCcChh-----h-HHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHH
Q 036237 301 LELLETMLIG---DVLPNDA-----T-LVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESAL 371 (689)
Q Consensus 301 ~~~~~~m~~~---g~~p~~~-----t-~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 371 (689)
...|.+.... ...+|.. | --.+....-..++.+.|.+.|..+++.... -+..|--|.-+....+...+|.
T Consensus 472 ~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~ 550 (1018)
T KOG2002|consen 472 LEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEAS 550 (1018)
T ss_pred HHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHH
Confidence 9999988764 2233332 1 122334445677899999999999886421 1222222222333336677888
Q ss_pred HHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhc------------cCcHHH
Q 036237 372 TVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG-MKPTAITFIGVLNACSH------------AGLVND 435 (689)
Q Consensus 372 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~------------~g~~~~ 435 (689)
..+..... .++..|+.+...|.....+..|.+-|+.....- ..+|..+..+|.+.|.. .+..++
T Consensus 551 ~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~K 630 (1018)
T KOG2002|consen 551 LLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEK 630 (1018)
T ss_pred HHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHH
Confidence 88887764 578889999989999999999998777665532 34677777777776543 345778
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 036237 436 GRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP--MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIK 513 (689)
Q Consensus 436 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 513 (689)
|+++|.++.+ .-+-|...-|-+.-.++..|++.+|..+|.+.. ...+..+|..+...|...|++-.|+++|+..++
T Consensus 631 Alq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lk 708 (1018)
T KOG2002|consen 631 ALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLK 708 (1018)
T ss_pred HHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888874 334457777888999999999999999999873 223567899999999999999999999999988
Q ss_pred --cCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 514 --VAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 514 --~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
..-+++.+...|+.++.+.|+|.+|.+........
T Consensus 709 kf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 709 KFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 33456788999999999999999999988766543
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.75 E-value=3.6e-14 Score=150.91 Aligned_cols=469 Identities=13% Similarity=0.094 Sum_probs=334.0
Q ss_pred HHHHHHHHhcccC--CCChhhHHHHHHHH--HhCCCchHHHHHHHHhHhCC--CCCCcccHHHHHHHHHhcCChHHHHHH
Q 036237 71 LHYARSIFDRILQ--HPSLVLYNLLIKCY--VFNQRSHEALTLFCDLLDRF--LLPDNFTLPCVIKGAARLGAIKEGKQI 144 (689)
Q Consensus 71 ~~~A~~~f~~~~~--~~~~~~~~~ll~~~--~~~g~~~~a~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~~ 144 (689)
++.|.+.|.-... ++|+- -.+..++ ...+++..|+.+|...+... ..||... .+-..+.+.++.+.|+..
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil--~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a 221 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNIL--ALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLA 221 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchH--HHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHH
Confidence 5777777776653 23332 2333333 45678999999999876532 3344432 222344578888899999
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCC---hHHHHHHHhhCC---CCCeehHHHHHHHHHhCCChHHHHHHHhhCCCCC
Q 036237 145 HGLVFKLGFGFDKFVLSSLVSMYAKFGE---IDLGRRVFDAMD---DKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRD 218 (689)
Q Consensus 145 ~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d 218 (689)
|.++.+.. +-++.++-.|.-+-....+ +..+..++...- ..|++..+.|..-|.-.|+++.+..+...+....
T Consensus 222 ~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t 300 (1018)
T KOG2002|consen 222 FERALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNT 300 (1018)
T ss_pred HHHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh
Confidence 98888775 2333344444333333343 344444444332 3578889999999999999999999988876532
Q ss_pred ------cchHHHHHHHHHhCCChHHHHHHHhhcCcCC----cchHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChHHHH
Q 036237 219 ------LFSWTCLVDGFSKCGKVEIAREIFYRMPNRN----LVSWNAMINGYMKAGDVDSACELFDDMEIR---DLITWN 285 (689)
Q Consensus 219 ------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~ 285 (689)
..+|--+..+|-..|++++|...|.+..+.+ +..+-.|..+|.+.|+++.|...|+.+.+. +..+..
T Consensus 301 ~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~ 380 (1018)
T KOG2002|consen 301 ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMK 380 (1018)
T ss_pred hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHH
Confidence 2468889999999999999999999888633 445667899999999999999999998743 556777
Q ss_pred HHHHHHHHcC----ChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHH----HHHhCCccchhHHhHH
Q 036237 286 SMIAGYELNG----RFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSY----IVKNGFVVDGVLGTLL 357 (689)
Q Consensus 286 ~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~----~~~~g~~~~~~~~~~l 357 (689)
.|...|+..+ ..++|..++.+..+.- +-|...|..+...+.. +++.....++.. +...+-.+.+.+.|.+
T Consensus 381 iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNv 458 (1018)
T KOG2002|consen 381 ILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNV 458 (1018)
T ss_pred HHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhH
Confidence 7778887775 4566666666665432 3345555555554433 333333444443 3455666788999999
Q ss_pred HhhHHhcCCHHHHHHHHHhcCCC-------Ch------hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHH
Q 036237 358 IQMYSKCGSIESALTVFRAISKK-------KV------GHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI-TFIGV 423 (689)
Q Consensus 358 i~~~~~~g~~~~A~~~~~~~~~~-------~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~l 423 (689)
...+...|++++|...|...... |. .+-..+...+-..++.+.|.++|..... ..|+-+ .|..+
T Consensus 459 aslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk--ehp~YId~ylRl 536 (1018)
T KOG2002|consen 459 ASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK--EHPGYIDAYLRL 536 (1018)
T ss_pred HHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH--HCchhHHHHHHh
Confidence 99999999999999999877542 22 1233356667778899999999999988 467765 46666
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHH----hCCCCCCHHHHHHHHHHHHhc-
Q 036237 424 LNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIE----SMPMRPNFVIWMSLLSGARNH- 498 (689)
Q Consensus 424 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~----~~~~~p~~~~~~~ll~~~~~~- 498 (689)
+......+...+|...+..... ....++..++.+.+.+.+...+.-|.+-|. +....+|..+..+|.+.|...
T Consensus 537 ~~ma~~k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l 614 (1018)
T KOG2002|consen 537 GCMARDKNNLYEASLLLKDALN--IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQAL 614 (1018)
T ss_pred hHHHHhccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHh
Confidence 5444456788999999998885 455666677778889988888888887444 434457888888888866432
Q ss_pred -----------CChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCCC
Q 036237 499 -----------GNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGF 550 (689)
Q Consensus 499 -----------g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~~ 550 (689)
+..+.|+++|.++++.+|.|..+-+.++-+++..|+|.+|..+|.+..+...
T Consensus 615 ~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 615 HNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS 677 (1018)
T ss_pred cccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh
Confidence 3567889999999999999998999999999999999999999999998665
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.74 E-value=8.2e-14 Score=155.11 Aligned_cols=440 Identities=11% Similarity=0.035 Sum_probs=291.6
Q ss_pred HHHHHhhcccccCCCCHHHHHHHHhcccC-CCChh-hHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccH-HHH--H
Q 036237 55 ISSRLLSLYVDPHINNLHYARSIFDRILQ-HPSLV-LYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTL-PCV--I 129 (689)
Q Consensus 55 ~~~~ll~~~~~~~~g~~~~A~~~f~~~~~-~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~-~~l--l 129 (689)
.+...|-.+ + .|++..|+..|++..+ .|+.. ....++..+...|+.++|+..+++.. .|+...+ ..+ .
T Consensus 37 ~y~~aii~~-r--~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA 109 (822)
T PRK14574 37 QYDSLIIRA-R--AGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAA 109 (822)
T ss_pred HHHHHHHHH-h--CCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHH
Confidence 345555444 4 6999999999999874 45531 23388888999999999999999987 3433333 333 4
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCeehHHHHHHHHHh--CCChHHH
Q 036237 130 KGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVK--KGEVEVA 207 (689)
Q Consensus 130 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~--~g~~~~A 207 (689)
..+...|+++.|.++++.+++.. +.+...+..++..|...++.++|++.++++...++.....+..+|.. .++..+|
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~A 188 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDA 188 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHH
Confidence 46778899999999999999986 45567778889999999999999999999987555443334445555 5566569
Q ss_pred HHHHhhCCC--C-CcchHHHHHHHHHhCCChHHHHHHHhhcCcCCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHH
Q 036237 208 MKLFDEMPD--R-DLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITW 284 (689)
Q Consensus 208 ~~~~~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 284 (689)
++.++++.+ | +...+..+..++.+.|-...|.++..+-.. ..+-...... +.+.|.+..+....++.
T Consensus 189 L~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~--~f~~~~~~~l-----~~~~~a~~vr~a~~~~~--- 258 (822)
T PRK14574 189 LQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPN--LVSAEHYRQL-----ERDAAAEQVRMAVLPTR--- 258 (822)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcc--ccCHHHHHHH-----HHHHHHHHHhhcccccc---
Confidence 999999976 4 456678888999999999999988776442 1111100000 01111111111100000
Q ss_pred HHHHHHHHHcCC---hHHHHHHHHHhcc-CCCCcCh-hhH----HHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHh
Q 036237 285 NSMIAGYELNGR---FMEALELLETMLI-GDVLPND-ATL----VSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGT 355 (689)
Q Consensus 285 ~~li~~~~~~g~---~~~A~~~~~~m~~-~g~~p~~-~t~----~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 355 (689)
...++ .+.|+.-++.+.. .+-.|.. .-| .--+-++...++..++...++.+...+.+....+-.
T Consensus 259 -------~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~ 331 (822)
T PRK14574 259 -------SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARR 331 (822)
T ss_pred -------cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHH
Confidence 00001 1233333333332 1111211 111 122334555566666666666666655544445566
Q ss_pred HHHhhHHhcCCHHHHHHHHHhcCCC---------ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC-------------C
Q 036237 356 LLIQMYSKCGSIESALTVFRAISKK---------KVGHWTAMIVGLGMHGMATQALDLFNKMCRMG-------------M 413 (689)
Q Consensus 356 ~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-------------~ 413 (689)
++.++|...++.++|..+|+++... +......|.-+|...+++++|..+++++.+.. .
T Consensus 332 a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~p 411 (822)
T PRK14574 332 WAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEP 411 (822)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCC
Confidence 6666666667777777666665331 22224567777778888888888888877621 1
Q ss_pred CCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-HHHHHH
Q 036237 414 KPTAI-TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP-MRPN-FVIWMS 490 (689)
Q Consensus 414 ~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~ 490 (689)
.||-. .+..++..+...|++++|++.++.+.. .-+-|......+.+++...|++.+|++.++... ..|+ ..+...
T Consensus 412 n~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~ 489 (822)
T PRK14574 412 NDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERA 489 (822)
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHH
Confidence 22322 334456678889999999999999984 334457888999999999999999999997763 4564 456777
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCchh
Q 036237 491 LLSGARNHGNKDIGEYAANNLIKVAPDTIGC 521 (689)
Q Consensus 491 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 521 (689)
.+.+....+++++|..+.+.+++..|+++.+
T Consensus 490 ~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 490 QAETAMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 8888889999999999999999999998743
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=5.9e-12 Score=122.25 Aligned_cols=401 Identities=11% Similarity=0.091 Sum_probs=256.8
Q ss_pred CchHHHHHHHHHHHhCCCCCchHHHHHhhc---cccc------------------------CCCCHHHHHHHHhcccCCC
Q 036237 33 THKETQQLHALSVKTNLIYHSGISSRLLSL---YVDP------------------------HINNLHYARSIFDRILQHP 85 (689)
Q Consensus 33 ~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~---~~~~------------------------~~g~~~~A~~~f~~~~~~~ 85 (689)
.+..+.-++.+|...|++.++.+.-.|+.. |-.+ +.|.+.+ -+|+..| .
T Consensus 130 EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAd--L~~E~~P--K 205 (625)
T KOG4422|consen 130 EVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVAD--LLFETLP--K 205 (625)
T ss_pred ccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHH--HHHhhcC--C
Confidence 377788899999999988887776666543 2110 0233333 4444444 5
Q ss_pred ChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 036237 86 SLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVS 165 (689)
Q Consensus 86 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 165 (689)
+..+|..||.++++-...+.|.++|++..+...+.+..+||.+|.+.+- ..++.+..+|+...+.||..|+|++++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHHHHH
Confidence 6678999999999999999999999999998888999999999987653 334889999999999999999999999
Q ss_pred HHHhcCChHHHHHHHh----hCC----CCCeehHHHHHHHHHhCCChHH-HHHHHhhCCC------------CCcchHHH
Q 036237 166 MYAKFGEIDLGRRVFD----AMD----DKDLVSWNCLIDGYVKKGEVEV-AMKLFDEMPD------------RDLFSWTC 224 (689)
Q Consensus 166 ~~~~~g~~~~A~~~~~----~m~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~------------~d~~~~~~ 224 (689)
...+.|+++.|++.+- +|+ +|+..+|..+|..+.+.++..+ |..++.++.. .|...|.+
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 9999999988776554 443 5888999999999988887744 4444433321 25556777
Q ss_pred HHHHHHhCCChHHHHHHHhhcCcCCcchHHHHHHHHHhcCCHHHHHHHHHhcCC--CChHHHHHHHHHHHHcCChHHHHH
Q 036237 225 LVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEI--RDLITWNSMIAGYELNGRFMEALE 302 (689)
Q Consensus 225 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~ 302 (689)
.+..|.+..+.+.|.++.......+ + ++.|.. ....-|..+....++....+.-+.
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~---------------N-------~~~ig~~~~~~fYyr~~~~licq~es~~~~~~ 419 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGD---------------N-------WKFIGPDQHRNFYYRKFFDLICQMESIDVTLK 419 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCC---------------c-------hhhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888887765443211 0 011110 112335566677777788888888
Q ss_pred HHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCCh
Q 036237 303 LLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKV 382 (689)
Q Consensus 303 ~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 382 (689)
.|+.|.-.-.-|+..+...+++|....+.++...+++..++..|.........-++..+++..- .|+.
T Consensus 420 ~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~------------hp~t 487 (625)
T KOG4422|consen 420 WYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKL------------HPLT 487 (625)
T ss_pred HHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCC------------CCCC
Confidence 8888887777788888888888888888888888888888777644433333222222222110 1111
Q ss_pred h---hHHHHHHHHHHcCCHHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHH-
Q 036237 383 G---HWTAMIVGLGMHGMATQA-LDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYG- 457 (689)
Q Consensus 383 ~---~~~~li~~~~~~g~~~~A-~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~- 457 (689)
. -+.....-++ -++.++ ...-.+|.+....| ...+.++-.+.+.|..++|.+++..+.+...-.|.....|
T Consensus 488 p~r~Ql~~~~ak~a--ad~~e~~e~~~~R~r~~~~~~--t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnA 563 (625)
T KOG4422|consen 488 PEREQLQVAFAKCA--ADIKEAYESQPIRQRAQDWPA--TSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNA 563 (625)
T ss_pred hHHHHHHHHHHHHH--HHHHHHHHhhHHHHHhccCCh--hHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhh
Confidence 1 0111111000 011111 11222344333333 3344444455667777777777776654434344444444
Q ss_pred --HHHHHHHhcCCHHHHHHHHHhC
Q 036237 458 --CLVDILCRTGYLEEAKSTIESM 479 (689)
Q Consensus 458 --~li~~~~~~g~~~~A~~~~~~~ 479 (689)
-+++.-.+......|...++-|
T Consensus 564 m~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 564 MAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3444445566666676666655
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.61 E-value=1.5e-12 Score=127.02 Aligned_cols=272 Identities=17% Similarity=0.189 Sum_probs=204.8
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChHHHH----HHH-HHHHHcC-ChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccc
Q 036237 258 NGYMKAGDVDSACELFDDMEIRDLITWN----SMI-AGYELNG-RFMEALELLETMLIGDVLPNDATLVSALSAVAGLAV 331 (689)
Q Consensus 258 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~li-~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 331 (689)
--|.+.|+++.|.+++.-..++|..+-. .|- --|.+.| ++.+|..+-...+... .-+....+.-.......|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence 3578999999999998888766543322 222 2233333 4677777666654321 1122222222223345789
Q ss_pred hhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 036237 332 LNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKM 408 (689)
Q Consensus 332 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m 408 (689)
+++|...+.+.+...-.-....|| +.-.+-+.|++++|+..|-++.. .++...-.+...|-...++.+|++++.+.
T Consensus 506 ~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 999999999988765444444444 34457788999999999987764 56777777888899999999999999877
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHH
Q 036237 409 CRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP-MRPNFVI 487 (689)
Q Consensus 409 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~ 487 (689)
... ++.|+....-|...|-+.|+-.+|.+.+-.--+ -++-+.++...|..-|....-+++|+.+|++.. ++|+..-
T Consensus 585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~k 661 (840)
T KOG2003|consen 585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSK 661 (840)
T ss_pred ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHH
Confidence 652 344566788888999999999999988765442 355568999999999999999999999999975 7899999
Q ss_pred HHHHHHHH-HhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCC
Q 036237 488 WMSLLSGA-RNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQ 534 (689)
Q Consensus 488 ~~~ll~~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~ 534 (689)
|..++..| ++.|+++.|...|+......|.+..++-.|..++...|.
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 99998877 567999999999999999999999999999999888775
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.61 E-value=9.1e-11 Score=119.88 Aligned_cols=525 Identities=12% Similarity=0.081 Sum_probs=393.6
Q ss_pred ccCCccchH--HHHhcCCCchHHHHHHHHHHHhCCCCCchHHHHHhhcccccCCCCHHHHHHHHhcccC--CCChhhHHH
Q 036237 17 QHLPSRLHW--NILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQ--HPSLVLYNL 92 (689)
Q Consensus 17 ~~~p~~~~~--~~l~~c~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~~ 92 (689)
...|.++.+ ....-=.....-+.|....+. .++.++.+|...+.. ...++|+-++.+..+ +.+...|.
T Consensus 343 r~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe-~iP~sv~LWKaAVel------E~~~darilL~rAveccp~s~dLwl- 414 (913)
T KOG0495|consen 343 RFLPTSVRLWLKAADLESDTKNKKRVLRKALE-HIPRSVRLWKAAVEL------EEPEDARILLERAVECCPQSMDLWL- 414 (913)
T ss_pred HhCCCChhhhhhHHhhhhHHHHHHHHHHHHHH-hCCchHHHHHHHHhc------cChHHHHHHHHHHHHhccchHHHHH-
Confidence 456666553 221111112333444444333 235566777666543 445568888877653 33344444
Q ss_pred HHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHH----HhCCCCchhHHHHHHHHHH
Q 036237 93 LIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVF----KLGFGFDKFVLSSLVSMYA 168 (689)
Q Consensus 93 ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~----~~g~~~~~~~~~~li~~~~ 168 (689)
+|++..-++.|..++...++. ++-+...|.+....=-..|+.+....+.++.+ ..|+..+..-|-.=...+-
T Consensus 415 ---AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e 490 (913)
T KOG0495|consen 415 ---ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE 490 (913)
T ss_pred ---HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh
Confidence 556666778888888888875 55577777777666667788888777776543 4577778777777777777
Q ss_pred hcCChHHHHHHHhhCCC------CCeehHHHHHHHHHhCCChHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChHHHH
Q 036237 169 KFGEIDLGRRVFDAMDD------KDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD---RDLFSWTCLVDGFSKCGKVEIAR 239 (689)
Q Consensus 169 ~~g~~~~A~~~~~~m~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~ 239 (689)
+.|.+-.+..+...... .--.+|+.-...|.+.+.++-|..+|....+ .+...|.-....=-..|..+.-.
T Consensus 491 ~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~ 570 (913)
T KOG0495|consen 491 DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLE 570 (913)
T ss_pred hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHH
Confidence 78887777777665542 2345788888999999999999999988876 24566776666666788888888
Q ss_pred HHHhhcCc---CCcchHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCC
Q 036237 240 EIFYRMPN---RNLVSWNAMINGYMKAGDVDSACELFDDMEI---RDLITWNSMIAGYELNGRFMEALELLETMLIGDVL 313 (689)
Q Consensus 240 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 313 (689)
.+|+++.. .....|-....-+-..|++..|..++...-+ .+...|-+-+..-..+.++++|..+|.+... ..
T Consensus 571 Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~s 648 (913)
T KOG0495|consen 571 ALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--IS 648 (913)
T ss_pred HHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cC
Confidence 88888875 2345566666777888999999998887653 2567888888989999999999999999876 45
Q ss_pred cChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHH
Q 036237 314 PNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK--K-KVGHWTAMIV 390 (689)
Q Consensus 314 p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~ 390 (689)
|+...|.--+.---.++..++|.++++..++. ++.-...|-.+.+.+-+.++++.|.+.|..-.+ | .+..|-.|..
T Consensus 649 gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLak 727 (913)
T KOG0495|consen 649 GTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAK 727 (913)
T ss_pred CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHH
Confidence 66666665555556678899999999888775 344567888889999999999999999887665 3 4557888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHH
Q 036237 391 GLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLE 470 (689)
Q Consensus 391 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 470 (689)
.=-+.|+..+|..+|++..-.+ +-|...|...+..-.+.|..+.|..+..+..+ ..+.+-..|..-|.+..+.++-.
T Consensus 728 leEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkT 804 (913)
T KOG0495|consen 728 LEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKT 804 (913)
T ss_pred HHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccch
Confidence 8888999999999999988754 34567899999999999999999999998886 45566788888999999999887
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCCC
Q 036237 471 EAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGF 550 (689)
Q Consensus 471 ~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~~ 550 (689)
.+.+.+++.. .|+.+..++...+-...+++.|...|+++++.+|++..++..+-..+...|.-++-.+++.+....
T Consensus 805 ks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~-- 880 (913)
T KOG0495|consen 805 KSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA-- 880 (913)
T ss_pred HHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--
Confidence 7877787765 466666777777888889999999999999999999999999999999999999999999887764
Q ss_pred ccCCcccEEEECC
Q 036237 551 RKDPGSSSIEHRG 563 (689)
Q Consensus 551 ~~~~~~~~~~~~~ 563 (689)
.|.-|..|..+..
T Consensus 881 EP~hG~~W~avSK 893 (913)
T KOG0495|consen 881 EPTHGELWQAVSK 893 (913)
T ss_pred CCCCCcHHHHHhh
Confidence 3445667765443
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.57 E-value=6e-11 Score=126.01 Aligned_cols=297 Identities=16% Similarity=0.169 Sum_probs=172.2
Q ss_pred CCHHHHHHHHhcccC--CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHH
Q 036237 69 NNLHYARSIFDRILQ--HPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHG 146 (689)
Q Consensus 69 g~~~~A~~~f~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 146 (689)
|++++|.+++.++.. +.+...|.+|...|-+.|+.+.++..+-...... +-|...|..+-.-....|.+++|.-.+.
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 888888888877754 4566678888888888888888777665443332 2244667777777777788888888888
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCe-ehH-------HHHHHHHHhCCChHHHHHHHhhCCC--
Q 036237 147 LVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDL-VSW-------NCLIDGYVKKGEVEVAMKLFDEMPD-- 216 (689)
Q Consensus 147 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~-------~~li~~~~~~g~~~~A~~~~~~m~~-- 216 (689)
++++.. +++....---+.+|-+.|+...|..-|.++...++ +.| -.++..+...++-+.|.+.++....
T Consensus 232 rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 232 RAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE 310 (895)
T ss_pred HHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 888776 55555555556777788888888777777654322 111 1234445555666667666666543
Q ss_pred ---CCcchHHHHHHHHHhCCChHHHHHHHhhcCc----CC----------------------------------------
Q 036237 217 ---RDLFSWTCLVDGFSKCGKVEIAREIFYRMPN----RN---------------------------------------- 249 (689)
Q Consensus 217 ---~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~---------------------------------------- 249 (689)
-+...++.++..+.+...++.|......+.. ++
T Consensus 311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L 390 (895)
T KOG2076|consen 311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHL 390 (895)
T ss_pred cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcc
Confidence 1334566666666666666666655444332 00
Q ss_pred -----------------------cchHHHHHHHHHhcCCHHHHHHHHHhcCCC----ChHHHHHHHHHHHHcCChHHHHH
Q 036237 250 -----------------------LVSWNAMINGYMKAGDVDSACELFDDMEIR----DLITWNSMIAGYELNGRFMEALE 302 (689)
Q Consensus 250 -----------------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~ 302 (689)
+..|.-+.++|...|++.+|.++|..+... +...|--+..+|...|..++|++
T Consensus 391 ~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e 470 (895)
T KOG2076|consen 391 KERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIE 470 (895)
T ss_pred cccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHH
Confidence 334445555555666666666666555432 44455555666666666666666
Q ss_pred HHHHhccCCCCcChh-hHHHHHHHHHcccchhhHHHHHHHHH--------HhCCccchhHHhHHHhhHHhcCCHHH
Q 036237 303 LLETMLIGDVLPNDA-TLVSALSAVAGLAVLNKGRWMHSYIV--------KNGFVVDGVLGTLLIQMYSKCGSIES 369 (689)
Q Consensus 303 ~~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~i~~~~~--------~~g~~~~~~~~~~li~~~~~~g~~~~ 369 (689)
.|+..+.. .|+.. .-.++-..+.+.|+.++|.+.+..+. ..+..|+..+.....+.|.+.|+.++
T Consensus 471 ~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 471 FYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 66555542 23222 22333344455555665555555522 22233334444444444555555443
No 32
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=8.2e-11 Score=114.47 Aligned_cols=407 Identities=13% Similarity=0.094 Sum_probs=254.0
Q ss_pred hhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHH--hcCChHH-HHHHHHHHHHhCCCCchhHHHHH
Q 036237 87 LVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAA--RLGAIKE-GKQIHGLVFKLGFGFDKFVLSSL 163 (689)
Q Consensus 87 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~-a~~~~~~~~~~g~~~~~~~~~~l 163 (689)
+++=|.|+... ..|....+.-+|+.|...|+..+...--.|++..+ ...++-- -.+.|-.|.+.| +.+..+|
T Consensus 116 V~~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKMI-SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHHHH-hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 44566766654 46788899999999999998777766555555433 2222222 123344454444 3333444
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCCeehHHHHHHHHHhCCChHHHHHHHhhCCC----CCcchHHHHHHHHHhCCChHHHH
Q 036237 164 VSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD----RDLFSWTCLVDGFSKCGKVEIAR 239 (689)
Q Consensus 164 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~d~~~~~~li~~~~~~g~~~~A~ 239 (689)
|.|++.+ ++-+...+...++..||.|.++-...+.|.+++++-.. -+..+||.+|.+-+-... .
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K 258 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----K 258 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----H
Confidence 4455544 44444455677899999999999999999999998865 366788888877554433 4
Q ss_pred HHHhhcC----cCCcchHHHHHHHHHhcCCHHHHHHH----HHhcC----CCChHHHHHHHHHHHHcCChHH-HHHHHHH
Q 036237 240 EIFYRMP----NRNLVSWNAMINGYMKAGDVDSACEL----FDDME----IRDLITWNSMIAGYELNGRFME-ALELLET 306 (689)
Q Consensus 240 ~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~----~~~~~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~~ 306 (689)
++..+|. .||..++|+++....+.|+++.|.+. +.+|+ +|...+|..+|..+.+.+++.+ |..+..+
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~d 338 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIND 338 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence 5555554 58999999999999999988876554 44454 5678899999999988888754 4444444
Q ss_pred hc----cCCCCc----ChhhHHHHHHHHHcccchhhHHHHHHHHHHhC----Cccc---hhHHhHHHhhHHhcCCHHHHH
Q 036237 307 ML----IGDVLP----NDATLVSALSAVAGLAVLNKGRWMHSYIVKNG----FVVD---GVLGTLLIQMYSKCGSIESAL 371 (689)
Q Consensus 307 m~----~~g~~p----~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g----~~~~---~~~~~~li~~~~~~g~~~~A~ 371 (689)
.+ ...++| |..-|.+.+..|.++.+.+.|.++++...... +.++ ..-|..+....+....++.-.
T Consensus 339 I~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~ 418 (625)
T KOG4422|consen 339 IQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTL 418 (625)
T ss_pred HHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 333333 34457788899999999999999988765321 1222 344556777778888888888
Q ss_pred HHHHhcCC----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---------cHH----
Q 036237 372 TVFRAISK----KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAG---------LVN---- 434 (689)
Q Consensus 372 ~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g---------~~~---- 434 (689)
..++.|.. ++..+-..++.+..-.|+++-.-++|..|+..|-.-+...-.-++.-+++.. .+.
T Consensus 419 ~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~a 498 (625)
T KOG4422|consen 419 KWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFA 498 (625)
T ss_pred HHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHH
Confidence 88888765 4555556667777777777777777777776663333333222332222221 000
Q ss_pred -HHHHHH-------HHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcC
Q 036237 435 -DGRRYF-------NMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-------PMRPNFVIWMSLLSGARNHG 499 (689)
Q Consensus 435 -~a~~~~-------~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~ll~~~~~~g 499 (689)
-|..++ .++. .........++..-++.|.|+.++|.+++.-. +..|......-|+.+-.+.+
T Consensus 499 k~aad~~e~~e~~~~R~r---~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~ 575 (625)
T KOG4422|consen 499 KCAADIKEAYESQPIRQR---AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSN 575 (625)
T ss_pred HHHHHHHHHHHhhHHHHH---hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcC
Confidence 011111 1111 22334455666667777777777777766544 22233333334444555555
Q ss_pred ChHHHHHHHHHHhh
Q 036237 500 NKDIGEYAANNLIK 513 (689)
Q Consensus 500 ~~~~a~~~~~~~~~ 513 (689)
+.-.|..+++-+..
T Consensus 576 spsqA~~~lQ~a~~ 589 (625)
T KOG4422|consen 576 SPSQAIEVLQLASA 589 (625)
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555543
No 33
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.55 E-value=1.9e-14 Score=144.00 Aligned_cols=254 Identities=15% Similarity=0.146 Sum_probs=113.0
Q ss_pred HHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHH-HHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCC
Q 036237 288 IAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS-AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGS 366 (689)
Q Consensus 288 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~ 366 (689)
...+.+.|++++|++++++......+|+...|..++. .+...++.+.|...++.+...+.. ++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 4455566667777776654443322344444444333 334456677777777766665433 45556666666 67888
Q ss_pred HHHHHHHHHhcCC--CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 036237 367 IESALTVFRAISK--KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMG-MKPTAITFIGVLNACSHAGLVNDGRRYFNMM 443 (689)
Q Consensus 367 ~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 443 (689)
+++|.+++...-+ ++...+..++..+.+.++++++.+++++..... .+++...|..+...+.+.|+.++|++.+++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888876643 466678888889999999999999999987643 3455667778888899999999999999999
Q ss_pred HHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCch
Q 036237 444 INDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESMP--MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIG 520 (689)
Q Consensus 444 ~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 520 (689)
.+ ..|+ ....+.++..+...|+.+++.++++... .+.|+..|..+..++...|+.+.|...++++.+..|+|+.
T Consensus 173 l~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 173 LE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 84 4565 7788899999999999999888877652 2346668899999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHH
Q 036237 521 CYVVLSNIYAAAGQWDKVSEVREMMK 546 (689)
Q Consensus 521 ~~~~L~~~~~~~g~~~~A~~~~~~m~ 546 (689)
....++.++...|+.++|.+++.+..
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999999999988764
No 34
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=6.2e-11 Score=116.66 Aligned_cols=326 Identities=12% Similarity=0.061 Sum_probs=248.9
Q ss_pred CCcchHHHHHHHHHhCCChHHHHHHHhhcCcCCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHH-HHHHHHHHcC
Q 036237 217 RDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWN-SMIAGYELNG 295 (689)
Q Consensus 217 ~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~li~~~~~~g 295 (689)
.|...+-...-.+.+.|....|+..|...+..-+..|.+-+....-.-+.+.+..+....+..+...-. .+..++....
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~ 241 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELH 241 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHH
Confidence 355555555556778888999999988888777777877777766666777766666555543322222 2345666667
Q ss_pred ChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCc--cchhHHhHHHhhHHhcCCHHHHHHH
Q 036237 296 RFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFV--VDGVLGTLLIQMYSKCGSIESALTV 373 (689)
Q Consensus 296 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~ 373 (689)
+.++++.-.+.....|+..+...-+....+.-...++++|+.+|+.+.+...- .|..+|+.++-.--.+.++.--.+.
T Consensus 242 q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~ 321 (559)
T KOG1155|consen 242 QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQN 321 (559)
T ss_pred HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHH
Confidence 88888888888888887666665555666667788999999999999987431 2456666655333332233222222
Q ss_pred HHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-
Q 036237 374 FRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI-TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP- 451 (689)
Q Consensus 374 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p- 451 (689)
.-.+.+-.+.|...+.+-|+-.++.++|...|++..+ +.|... .|+.+..-|....+...|.+.++.++ .+.|
T Consensus 322 v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv---di~p~ 396 (559)
T KOG1155|consen 322 VSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV---DINPR 396 (559)
T ss_pred HHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHH---hcCch
Confidence 2233334556777788888999999999999999998 566644 67777788999999999999999998 3445
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 036237 452 TIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIY 529 (689)
Q Consensus 452 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~ 529 (689)
|-..|-.|.++|.-.+...-|+-+|++. ..+| |...|.+|...|.+.++.++|++.|.+++.....+...|+.|+++|
T Consensus 397 DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLy 476 (559)
T KOG1155|consen 397 DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLY 476 (559)
T ss_pred hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 5789999999999999999999999997 4666 7889999999999999999999999999998776778999999999
Q ss_pred HhcCCcchHHHHHHHHHh
Q 036237 530 AAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 530 ~~~g~~~~A~~~~~~m~~ 547 (689)
.+.++.++|...+++-.+
T Consensus 477 e~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 477 EELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHhHHHHHHHHHHHHH
Confidence 999999999999988765
No 35
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=1.3e-10 Score=115.05 Aligned_cols=412 Identities=14% Similarity=0.085 Sum_probs=239.9
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHhCCCCCC-cccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc-hhHHHHHHHHH
Q 036237 90 YNLLIKCYVFNQRSHEALTLFCDLLDRFLLPD-NFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFD-KFVLSSLVSMY 167 (689)
Q Consensus 90 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~ 167 (689)
+-..-+-+.++|.+++|++.|...++. .|| +..|.....+|...|+|+++.+--...++.+ |+ +..+..-..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHH
Confidence 334455677889999999999999875 677 6677777788888999998888777777654 44 34666667778
Q ss_pred HhcCChHHHHHHHhhCCCCCeehHHHHHHHHHhCCChHHHHHHHhh---------CC---CCCcchHHHHHHHHHhCCCh
Q 036237 168 AKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDE---------MP---DRDLFSWTCLVDGFSKCGKV 235 (689)
Q Consensus 168 ~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~---------m~---~~d~~~~~~li~~~~~~g~~ 235 (689)
-..|++++|+.= +|-.++..++....-..-+.+++++ |. .|...+ .+.|..|...-..
T Consensus 194 E~lg~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS-~~fi~syf~sF~~ 263 (606)
T KOG0547|consen 194 EQLGKFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPS-ATFIASYFGSFHA 263 (606)
T ss_pred HhhccHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCc-HHHHHHHHhhccc
Confidence 888888877642 1222333333222222222222211 11 111111 1112222111000
Q ss_pred HHHHHHHhhcCcCCcchHHHHHHHH----Hhc-CCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHhccC
Q 036237 236 EIAREIFYRMPNRNLVSWNAMINGY----MKA-GDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIG 310 (689)
Q Consensus 236 ~~A~~~~~~~~~~~~~~~~~li~~~----~~~-g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 310 (689)
+- ...+..+.......+..++ ... ..+..|...+.+-.. ...... ..+..+.-++..
T Consensus 264 ~~----~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~------~~~~~~--~~n~~d~~le~~------ 325 (606)
T KOG0547|consen 264 DP----KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECL------GSESSL--SVNEIDAELEYM------ 325 (606)
T ss_pred cc----cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhh------hhhhhc--cccccchhHHHH------
Confidence 00 0000001111111111111 110 012222222211100 000000 000000000000
Q ss_pred CCCcChhhHHHHHHH--HHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhH
Q 036237 311 DVLPNDATLVSALSA--VAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHW 385 (689)
Q Consensus 311 g~~p~~~t~~~ll~a--~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~ 385 (689)
.-..++.+ ..-.|+.-.+.+-++.+++....++. .|--+..+|....+.++-.+.|+.... .++.+|
T Consensus 326 -------A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvY 397 (606)
T KOG0547|consen 326 -------AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVY 397 (606)
T ss_pred -------HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchh
Confidence 00011111 11234455555555555554433222 244455567777777777777776654 356677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 036237 386 TAMIVGLGMHGMATQALDLFNKMCRMGMKPTA-ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILC 464 (689)
Q Consensus 386 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 464 (689)
..-...+.-.+++++|..-|++.+. +.|+. ..|.-+--+..+.+.++++...|++.++ .++--++.|+.....+.
T Consensus 398 yHRgQm~flL~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLt 473 (606)
T KOG0547|consen 398 YHRGQMRFLLQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILT 473 (606)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHh
Confidence 7777777778889999999999887 56654 4677777777788899999999999986 55566889999999999
Q ss_pred hcCCHHHHHHHHHhC-CCCCC---------HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCC
Q 036237 465 RTGYLEEAKSTIESM-PMRPN---------FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQ 534 (689)
Q Consensus 465 ~~g~~~~A~~~~~~~-~~~p~---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~ 534 (689)
..+++++|.+.++.. .+.|+ +.+--+++-.- =.+++..|+.+++++++++|....+|..|+.+-...|+
T Consensus 474 DqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~ 552 (606)
T KOG0547|consen 474 DQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGK 552 (606)
T ss_pred hHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhh
Confidence 999999999999875 34443 22222222222 22899999999999999999999999999999999999
Q ss_pred cchHHHHHHHHH
Q 036237 535 WDKVSEVREMMK 546 (689)
Q Consensus 535 ~~~A~~~~~~m~ 546 (689)
.++|.++|++-.
T Consensus 553 i~eAielFEksa 564 (606)
T KOG0547|consen 553 IDEAIELFEKSA 564 (606)
T ss_pred HHHHHHHHHHHH
Confidence 999999999754
No 36
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=4.4e-12 Score=130.55 Aligned_cols=244 Identities=15% Similarity=0.138 Sum_probs=173.9
Q ss_pred ChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCC--ccchhHHhHHHhhHHhcCCHHHHHHH
Q 036237 296 RFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGF--VVDGVLGTLLIQMYSKCGSIESALTV 373 (689)
Q Consensus 296 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~ 373 (689)
+..+|+..|.... ..+.-.......+..+|..++++++++.+|+.+.+... ..+..+|++.+--+-+.=.+..--+-
T Consensus 334 ~~~~A~~~~~klp-~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLP-SHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhH-HhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 4567777777733 33333445556677778888888888888877766432 22455666555433322222111111
Q ss_pred HHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC
Q 036237 374 FRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKP-TAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT 452 (689)
Q Consensus 374 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 452 (689)
+-.+....+.+|-++..+|.-+++.+.|++.|++..+ +.| ...+|+.+..-+.....+|.|...|+..+ + .+
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---~--~~ 485 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---G--VD 485 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh---c--CC
Confidence 2222234677899999999989999999999988887 667 46688877777778888888888888766 2 55
Q ss_pred hhHHHH---HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHH
Q 036237 453 IEHYGC---LVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSN 527 (689)
Q Consensus 453 ~~~~~~---li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~ 527 (689)
+.+|++ |.-.|.+.++++.|+-.|+++ .+.| +.+....+...+.+.|+.++|+.++++++.++|.++-.-+.-+.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 555554 556788889999998888886 4556 56666777777888888899999999999999988888888888
Q ss_pred HHHhcCCcchHHHHHHHHHh
Q 036237 528 IYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 528 ~~~~~g~~~~A~~~~~~m~~ 547 (689)
++...+++++|...++++++
T Consensus 566 il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKE 585 (638)
T ss_pred HHHhhcchHHHHHHHHHHHH
Confidence 88888999999988888876
No 37
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=1.2e-09 Score=107.94 Aligned_cols=473 Identities=14% Similarity=0.140 Sum_probs=338.1
Q ss_pred CCCHHHHHHHHhcccC--CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHH
Q 036237 68 INNLHYARSIFDRILQ--HPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIH 145 (689)
Q Consensus 68 ~g~~~~A~~~f~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 145 (689)
.+++..|+.+|++... .++...|---+..=.++.....|..++++....=+..|..-| ..+-.=-..|++..|+++|
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy-KY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY-KYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH-HHHHHHHHhcccHHHHHHH
Confidence 5788899999998764 577778888888888999999999999998765333343333 2223334678999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCeehHHHHHHHHHhCCChHHHHHHHhhCCC--CC---
Q 036237 146 GLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD--DKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD--RD--- 218 (689)
Q Consensus 146 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~d--- 218 (689)
++-.+. .|+...|++.|++=.+-..++.|+.++++.. .|++.+|--...--.++|.+.-|..+|....+ .|
T Consensus 165 erW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~ 242 (677)
T KOG1915|consen 165 ERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEE 242 (677)
T ss_pred HHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHH
Confidence 988765 7999999999999999999999999999865 68999999999999999999999999988765 22
Q ss_pred -cchHHHHHHHHHhCCChHHHHHHHhhcCc--C-C--cchHHHHHHHHHhcCCHHHHHHH--------HHhcCCC---Ch
Q 036237 219 -LFSWTCLVDGFSKCGKVEIAREIFYRMPN--R-N--LVSWNAMINGYMKAGDVDSACEL--------FDDMEIR---DL 281 (689)
Q Consensus 219 -~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~--~~~~~~li~~~~~~g~~~~A~~~--------~~~~~~~---~~ 281 (689)
...+++....=.+...++.|.-+|.-.+. | + ...|......=-+-|+-...+.. ++.+... |-
T Consensus 243 ~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nY 322 (677)
T KOG1915|consen 243 AEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNY 322 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCc
Confidence 23444444444456678888888877665 2 2 33444444444444553333322 2223333 45
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcCh-------hhHHHHHHHH---HcccchhhHHHHHHHHHHhCCccch
Q 036237 282 ITWNSMIAGYELNGRFMEALELLETMLIGDVLPND-------ATLVSALSAV---AGLAVLNKGRWMHSYIVKNGFVVDG 351 (689)
Q Consensus 282 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~a~---~~~~~~~~a~~i~~~~~~~g~~~~~ 351 (689)
.+|--.+..-...|+.+...++|++.... ++|-. ..|.-+=-+| ....+.+.+++++...++ -++...
T Consensus 323 DsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPHkk 400 (677)
T KOG1915|consen 323 DSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPHKK 400 (677)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCccc
Confidence 67777888888889999999999999865 55532 1222222222 356788999999999988 345566
Q ss_pred hHHhHHHhhHH----hcCCHHHHHHHHHhcCC--CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036237 352 VLGTLLIQMYS----KCGSIESALTVFRAISK--KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN 425 (689)
Q Consensus 352 ~~~~~li~~~~----~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 425 (689)
+++.-+=-+|+ ++.++..|.+++..... |...++..-|..=.+.++++....++++.++.+ +-|..+|.....
T Consensus 401 FtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaE 479 (677)
T KOG1915|consen 401 FTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAE 479 (677)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHH
Confidence 66666655554 68999999999988764 666788888888899999999999999999854 335667877777
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH-----hcC
Q 036237 426 ACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRPNFVIWMSLLSGAR-----NHG 499 (689)
Q Consensus 426 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~-----~~g 499 (689)
.-...|+.|.|+.+|+.++....+..-...|.+.|+-=...|.++.|..+++++ ...+...+|-++..--. +.+
T Consensus 480 lE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~ 559 (677)
T KOG1915|consen 480 LETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQED 559 (677)
T ss_pred HHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccccc
Confidence 777889999999999999864333333567777888888999999999999987 23345557877765433 334
Q ss_pred -----------ChHHHHHHHHHHhh----cCCCC--chhHHHHHHHHHhcCCcchHHHHHHHHH
Q 036237 500 -----------NKDIGEYAANNLIK----VAPDT--IGCYVVLSNIYAAAGQWDKVSEVREMMK 546 (689)
Q Consensus 500 -----------~~~~a~~~~~~~~~----~~p~~--~~~~~~L~~~~~~~g~~~~A~~~~~~m~ 546 (689)
+...|..+|+++.. ..|.. ...+-.+.+.=...|...+...+-+.|.
T Consensus 560 ~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mP 623 (677)
T KOG1915|consen 560 EDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMP 623 (677)
T ss_pred cchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhcc
Confidence 56688888888865 33321 1122333444455676666666666663
No 38
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.47 E-value=8.9e-11 Score=124.74 Aligned_cols=310 Identities=15% Similarity=0.189 Sum_probs=187.1
Q ss_pred CChHHHHHHHhhCCCC---CcchHHHHHHHHHhCCChHHHHHHHhhcC---cCCcchHHHHHHHHHhcCCHHHHHHHHHh
Q 036237 202 GEVEVAMKLFDEMPDR---DLFSWTCLVDGFSKCGKVEIAREIFYRMP---NRNLVSWNAMINGYMKAGDVDSACELFDD 275 (689)
Q Consensus 202 g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 275 (689)
|+.++|.+++.+..+. +...|.+|...|-+.|+.+++...+-.+. ..+...|..+.+...+.|.++.|.-.|.+
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~r 232 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSR 232 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 5555555555555431 33455555555555555555544332221 22334444444555555555555555544
Q ss_pred cCCCChHHH---HHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchh
Q 036237 276 MEIRDLITW---NSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGV 352 (689)
Q Consensus 276 ~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~ 352 (689)
..+.++.-| ---+..|-+.|+...|++-|.++. ....+.|..
T Consensus 233 AI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~-----------------------------------~~~p~~d~e 277 (895)
T KOG2076|consen 233 AIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLL-----------------------------------QLDPPVDIE 277 (895)
T ss_pred HHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHH-----------------------------------hhCCchhHH
Confidence 443222211 122334444455555555555544 433222222
Q ss_pred HHhH----HHhhHHhcCCHHHHHHHHHhcCC-----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH---
Q 036237 353 LGTL----LIQMYSKCGSIESALTVFRAISK-----KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITF--- 420 (689)
Q Consensus 353 ~~~~----li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~--- 420 (689)
-... .+..|...++-+.|.+.++.... -+...++.++..|.+..+++.|......+......||..-+
T Consensus 278 r~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~ 357 (895)
T KOG2076|consen 278 RIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD 357 (895)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh
Confidence 1111 23444555555666666665544 13345777777777778888887777777662222222111
Q ss_pred -------------------H----HHHHHHhccCcHHHHHHHHHHhHHhcCC--CCChhHHHHHHHHHHhcCCHHHHHHH
Q 036237 421 -------------------I----GVLNACSHAGLVNDGRRYFNMMINDYGI--EPTIEHYGCLVDILCRTGYLEEAKST 475 (689)
Q Consensus 421 -------------------~----~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~ 475 (689)
. -+.-++.+....+....+..... +..+ .-++..|.-+.++|...|++.+|+.+
T Consensus 358 ~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~-~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~ 436 (895)
T KOG2076|consen 358 ERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLV-EDNVWVSDDVDLYLDLADALTNIGKYKEALRL 436 (895)
T ss_pred hhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHH-HhcCChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence 1 12222333333333333333333 2243 33478899999999999999999999
Q ss_pred HHhCCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 476 IESMPMR---PNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 476 ~~~~~~~---p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
+..+... .+...|.-+...+...|.++.|+..|++++.+.|++..+-..|+.+|.+.|+.++|.+.++.|..
T Consensus 437 l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~ 511 (895)
T KOG2076|consen 437 LSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIIN 511 (895)
T ss_pred HHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccC
Confidence 9998422 35779999999999999999999999999999999999999999999999999999999998763
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.44 E-value=7.2e-11 Score=123.77 Aligned_cols=252 Identities=13% Similarity=0.012 Sum_probs=164.5
Q ss_pred HHhCCChHHHHHHHhhcCcC--CcchHH--HHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCChHHHH
Q 036237 229 FSKCGKVEIAREIFYRMPNR--NLVSWN--AMINGYMKAGDVDSACELFDDMEI---RDLITWNSMIAGYELNGRFMEAL 301 (689)
Q Consensus 229 ~~~~g~~~~A~~~~~~~~~~--~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 301 (689)
..+.|+.+.|...+.++.+. +...+. .....+...|+++.|...++++.+ .++.....+...|.+.|++++|+
T Consensus 128 A~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~ 207 (398)
T PRK10747 128 AQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLL 207 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHH
Confidence 35666666666666666542 221121 234566777777777777776653 25667778888888888888888
Q ss_pred HHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC--
Q 036237 302 ELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK-- 379 (689)
Q Consensus 302 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-- 379 (689)
+++..+.+.+..++. ....+-. ..+..++....+..+.+...++++.++.
T Consensus 208 ~~l~~l~k~~~~~~~-~~~~l~~---------------------------~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~ 259 (398)
T PRK10747 208 DILPSMAKAHVGDEE-HRAMLEQ---------------------------QAWIGLMDQAMADQGSEGLKRWWKNQSRKT 259 (398)
T ss_pred HHHHHHHHcCCCCHH-HHHHHHH---------------------------HHHHHHHHHHHHhcCHHHHHHHHHhCCHHH
Confidence 888888876544221 1110000 0111122222223344555555555543
Q ss_pred -CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHH
Q 036237 380 -KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGC 458 (689)
Q Consensus 380 -~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 458 (689)
.++.....+...+...|+.++|.+++++..+. .||... .++.+....++.+++.+..+...+ ..+-|...+.+
T Consensus 260 ~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk--~~P~~~~l~l~ 333 (398)
T PRK10747 260 RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIK--QHGDTPLLWST 333 (398)
T ss_pred hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHh--hCCCCHHHHHH
Confidence 46667777888888888888888888888763 444421 123344455888888888888874 23334566778
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 036237 459 LVDILCRTGYLEEAKSTIESM-PMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKV 514 (689)
Q Consensus 459 li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 514 (689)
+..++.+.|++++|.+.|++. ...|+...+..+...+...|+.++|..++++.+.+
T Consensus 334 lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 334 LGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 888888888888888888876 56688888888888888888999998888888764
No 40
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.4e-09 Score=110.07 Aligned_cols=415 Identities=13% Similarity=0.054 Sum_probs=279.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHh--hCCCCCeehHHHHHHHHHhCC
Q 036237 125 LPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFD--AMDDKDLVSWNCLIDGYVKKG 202 (689)
Q Consensus 125 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~--~m~~~~~~~~~~li~~~~~~g 202 (689)
+..+++-+....++..|.-+-+++...+.+|+ ..--+.++|.-.|+++.|..+.. .+.+.|..+.......+.+..
T Consensus 19 ~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~--d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk 96 (611)
T KOG1173|consen 19 YRRLVRDALMQHRYKTALFWADKVAGLTNDPA--DIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLK 96 (611)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhccCChH--HHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 34444444444555666666666655543333 33335566666677777766654 344567777777777777777
Q ss_pred ChHHHHHHHhhC----CC-----CC--------cch----HHHHH-------HHHHhCCChHHHHHHHhhcCcCCcchHH
Q 036237 203 EVEVAMKLFDEM----PD-----RD--------LFS----WTCLV-------DGFSKCGKVEIAREIFYRMPNRNLVSWN 254 (689)
Q Consensus 203 ~~~~A~~~~~~m----~~-----~d--------~~~----~~~li-------~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 254 (689)
.+++|+.++..- .. .| ..- -+.-. ..|....+.++|...|.+....++.-+.
T Consensus 97 ~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~E 176 (611)
T KOG1173|consen 97 EWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFE 176 (611)
T ss_pred HHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHH
Confidence 777777777722 11 01 110 01111 1233444566777777766655544443
Q ss_pred HHHHHHHhc--------------------C-CHHHHHHHHHhc----C----------------CCChHHHHHHHHHHHH
Q 036237 255 AMINGYMKA--------------------G-DVDSACELFDDM----E----------------IRDLITWNSMIAGYEL 293 (689)
Q Consensus 255 ~li~~~~~~--------------------g-~~~~A~~~~~~~----~----------------~~~~~~~~~li~~~~~ 293 (689)
++...-... + +.+.-+.+|+-. . +.++...-....-+..
T Consensus 177 a~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~ 256 (611)
T KOG1173|consen 177 AFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYY 256 (611)
T ss_pred HHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHH
Confidence 332221111 0 111111222211 0 1133344445556777
Q ss_pred cCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHH
Q 036237 294 NGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTV 373 (689)
Q Consensus 294 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 373 (689)
.+++.+.+++++...+.. ++....+..=|..+...|+..+-..+-..+++. .+..+.+|-++.--|.-.|+.++|++.
T Consensus 257 ~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry 334 (611)
T KOG1173|consen 257 GCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRY 334 (611)
T ss_pred cChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHH
Confidence 899999999999988753 444445555555667777766655555555554 456678888898889899999999999
Q ss_pred HHhcCCCC---hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC
Q 036237 374 FRAISKKK---VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIE 450 (689)
Q Consensus 374 ~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 450 (689)
|.+...-| ...|-.....|+-.|..++|+..+....+. ++-...-+.-+.--|.+.++.+.|.++|.... ++-
T Consensus 335 ~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~---ai~ 410 (611)
T KOG1173|consen 335 FSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL---AIA 410 (611)
T ss_pred HHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHH---hcC
Confidence 99877643 358999999999999999999999887763 11122233444556888999999999999987 666
Q ss_pred CC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCch
Q 036237 451 PT-IEHYGCLVDILCRTGYLEEAKSTIESMP--------MRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIG 520 (689)
Q Consensus 451 p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~--------~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 520 (689)
|+ +..++-+.-+....+.+.+|...|+..- .++ -..+|+.|..+|++.+.+++|+..+++++.+.|.++.
T Consensus 411 P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~ 490 (611)
T KOG1173|consen 411 PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDAS 490 (611)
T ss_pred CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchh
Confidence 65 6777778878888899999999998751 112 3457899999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 521 CYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 521 ~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
+|..++-+|...|+++.|.+.|.+..-
T Consensus 491 ~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 491 THASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 999999999999999999999987653
No 41
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.44 E-value=2e-10 Score=121.37 Aligned_cols=431 Identities=12% Similarity=0.044 Sum_probs=265.9
Q ss_pred HHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCC
Q 036237 108 TLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKD 187 (689)
Q Consensus 108 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 187 (689)
.++-.|...|+.||.+||..++.-|+..|+.+.|- +|..|.-..++.+..+++.++......++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45566777788888888888888888888887777 7777777777777777888887777777776665 566
Q ss_pred eehHHHHHHHHHhCCChHHHHHHHhh-CCC------------------------C-CcchHHHHHHHHHhCCChHHHHHH
Q 036237 188 LVSWNCLIDGYVKKGEVEVAMKLFDE-MPD------------------------R-DLFSWTCLVDGFSKCGKVEIAREI 241 (689)
Q Consensus 188 ~~~~~~li~~~~~~g~~~~A~~~~~~-m~~------------------------~-d~~~~~~li~~~~~~g~~~~A~~~ 241 (689)
..+|+.|..+|.+.|++.. ++..++ |.. | ....-.+.+.-....|.++.++++
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888888877654 222222 110 0 011112233444556677777777
Q ss_pred HhhcCcC---CcchHHHHHHHHHh-cCCHHHHHHHHHhcCC-CChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcCh
Q 036237 242 FYRMPNR---NLVSWNAMINGYMK-AGDVDSACELFDDMEI-RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPND 316 (689)
Q Consensus 242 ~~~~~~~---~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 316 (689)
+..+... ++... .++-... ...+++-........+ ++..++.+.+..-..+|+.+.|..++.+|.+.|++.+.
T Consensus 162 l~~~Pvsa~~~p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~ 239 (1088)
T KOG4318|consen 162 LAKVPVSAWNAPFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA 239 (1088)
T ss_pred HhhCCcccccchHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence 7666531 12211 1222211 1223443333344443 78889999999999999999999999999999999888
Q ss_pred hhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHH-----------HhcC-------
Q 036237 317 ATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVF-----------RAIS------- 378 (689)
Q Consensus 317 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~-----------~~~~------- 378 (689)
.-|..++-+ .++....+.+..-|...|+.|+..++.--+....+.|....+.+.. ..+.
T Consensus 240 HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k 316 (1088)
T KOG4318|consen 240 HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANK 316 (1088)
T ss_pred ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHH
Confidence 888887766 7777888888888889999999888876655554433322211111 0000
Q ss_pred ---------------C-------CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCH-HHHHHHHHH-------
Q 036237 379 ---------------K-------KKVGHWTAMIVGLGMHGMATQALDLFNKMCRM--GMKPTA-ITFIGVLNA------- 426 (689)
Q Consensus 379 ---------------~-------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~-~t~~~ll~a------- 426 (689)
+ ....+|...+. ...+|..++..++-..|..- ...|+. ..|..++.-
T Consensus 317 ~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~ 395 (1088)
T KOG4318|consen 317 RLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIER 395 (1088)
T ss_pred HHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHh
Confidence 0 01123433222 22245555544444433211 011111 112111111
Q ss_pred -------------------------------------------------------------------------HhccCcH
Q 036237 427 -------------------------------------------------------------------------CSHAGLV 433 (689)
Q Consensus 427 -------------------------------------------------------------------------~~~~g~~ 433 (689)
|.+.-+.
T Consensus 396 ~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~ 475 (1088)
T KOG4318|consen 396 HICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNK 475 (1088)
T ss_pred hHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 1111111
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 036237 434 NDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP-----MRPNFVIWMSLLSGARNHGNKDIGEYAA 508 (689)
Q Consensus 434 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 508 (689)
.+++..-+... ++-+ ...|..||+.+....+.++|..+.++.. +.-|..-+..+.+...+++....+..++
T Consensus 476 lK~l~~~ekye-~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL 551 (1088)
T KOG4318|consen 476 LKILCDEEKYE-DLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTIL 551 (1088)
T ss_pred HHHHHHHHHHH-HHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHH
Confidence 11111111111 1011 2567888999999999999999998874 2235556778888889999999999988
Q ss_pred HHHhh---cCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCCcccE
Q 036237 509 NNLIK---VAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSS 558 (689)
Q Consensus 509 ~~~~~---~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 558 (689)
+++.+ ..|........+.+.-+..|+.+...++++-+...|+.- .+--|
T Consensus 552 ~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~ 603 (1088)
T KOG4318|consen 552 YEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-TGPLW 603 (1088)
T ss_pred hhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-cccce
Confidence 88766 445556677788888899999999999999999988875 34344
No 42
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.43 E-value=1e-10 Score=122.53 Aligned_cols=274 Identities=13% Similarity=0.079 Sum_probs=199.9
Q ss_pred cCCHHHHHHHHHhcCCC--ChHH-HHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHH--HHHHHHHcccchhhHHH
Q 036237 263 AGDVDSACELFDDMEIR--DLIT-WNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLV--SALSAVAGLAVLNKGRW 337 (689)
Q Consensus 263 ~g~~~~A~~~~~~~~~~--~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~a~~~~~~~~~a~~ 337 (689)
.|+++.|++.+....+. ++.. |-.......+.|++++|.+.+.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 57777777777765443 2233 323334447788888888888888753 45543332 33456677888888888
Q ss_pred HHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCCh-----------hhHHHHHHHHHHcCCHHHHHHHHH
Q 036237 338 MHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKV-----------GHWTAMIVGLGMHGMATQALDLFN 406 (689)
Q Consensus 338 i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~A~~l~~ 406 (689)
.++.+.+.. +.++.+...+...|.+.|++++|.+++..+.+... ..|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888887776 45677888889999999999999999888876322 133344444444555666677777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-C
Q 036237 407 KMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-N 484 (689)
Q Consensus 407 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~ 484 (689)
.+.+. .+.+......+..++...|+.++|.++++...+ ..|+.... ++.+....|+.+++.+.+++. +..| |
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 66442 344667788889999999999999999998884 34555322 233334559999999999876 3345 5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHH
Q 036237 485 FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMK 546 (689)
Q Consensus 485 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~ 546 (689)
+..+..+...|...++++.|...|+++++..|++ ..+..|+.++.+.|+.++|.+++++-.
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5578899999999999999999999999999965 578899999999999999999998654
No 43
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=2e-11 Score=125.73 Aligned_cols=274 Identities=12% Similarity=0.028 Sum_probs=214.2
Q ss_pred CHHHHHHHHHhcCCC--Ch-HHHHHHHHHHHHcCChHHHHHHHHHhccCCC--CcChhhHHHHHHHHHcccchhhHHHHH
Q 036237 265 DVDSACELFDDMEIR--DL-ITWNSMIAGYELNGRFMEALELLETMLIGDV--LPNDATLVSALSAVAGLAVLNKGRWMH 339 (689)
Q Consensus 265 ~~~~A~~~~~~~~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~a~~~~~~~~~a~~i~ 339 (689)
+..+|...|..++.. |. .....+..+|...+++++|.++|+...+... .-+..+|+++|--+-+. -+..++
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 467888888886542 33 3445677889999999999999998876421 12455677766544221 111222
Q ss_pred HHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 036237 340 SYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKK---KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT 416 (689)
Q Consensus 340 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 416 (689)
..-.-.--+..+.+|.++.++|.-+++.+.|++.|++..+- ...+|+.+..-+.....+|+|...|+..+. +.|.
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~r 487 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPR 487 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCch
Confidence 22111122456899999999999999999999999998874 456888888889999999999999999875 5666
Q ss_pred HH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 036237 417 AI-TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLL 492 (689)
Q Consensus 417 ~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll 492 (689)
.. .|-.+...|.+.++++.|+-.|+++. .+.|. .....++...+-+.|+.++|+.+++++ ...| |+..---.+
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 54 67778889999999999999999998 56676 566778889999999999999999997 3333 555555556
Q ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 493 SGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 493 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
..+...+++++|...++++.++-|++..+|..++.+|-+.|+.+.|..-|.-+.+
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 6677889999999999999999999999999999999999999999988877665
No 44
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.39 E-value=1.1e-10 Score=114.20 Aligned_cols=412 Identities=13% Similarity=0.093 Sum_probs=260.8
Q ss_pred HHhcCChHHHHHHHHHHHHhCCCCchhHH-HHHHHHHHhcCChHHHHHHHhhCCC--CC------eehHHHHHHHHHhCC
Q 036237 132 AARLGAIKEGKQIHGLVFKLGFGFDKFVL-SSLVSMYAKFGEIDLGRRVFDAMDD--KD------LVSWNCLIDGYVKKG 202 (689)
Q Consensus 132 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~--~~------~~~~~~li~~~~~~g 202 (689)
|.......+|...++-+++...-|+.-.. -.+.+.|.+..++.+|.+.++.... |+ +...|.+-..+.+.|
T Consensus 211 y~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~g 290 (840)
T KOG2003|consen 211 YEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAG 290 (840)
T ss_pred hhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecc
Confidence 44445566777777777777655555432 2344566777777888777754432 11 123444445667778
Q ss_pred ChHHHHHHHhhCCC--CCcchHHHHHHHHHhCCChHHHHHHHhhcCc-C---------------CcchHHHH-----HHH
Q 036237 203 EVEVAMKLFDEMPD--RDLFSWTCLVDGFSKCGKVEIAREIFYRMPN-R---------------NLVSWNAM-----ING 259 (689)
Q Consensus 203 ~~~~A~~~~~~m~~--~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~---------------~~~~~~~l-----i~~ 259 (689)
.+++|+.-|+...+ |+..+-..|+-++...|+.++..+.|.+|+. | +....+.. +.-
T Consensus 291 qy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~ 370 (840)
T KOG2003|consen 291 QYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKN 370 (840)
T ss_pred cchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHH
Confidence 88888888877654 6655544555556667788888888877764 1 11111111 111
Q ss_pred HHhcCC--HHHHH----HHHHhcCCCChH---HH----------H--------HHHHHHHHcCChHHHHHHHHHhccCCC
Q 036237 260 YMKAGD--VDSAC----ELFDDMEIRDLI---TW----------N--------SMIAGYELNGRFMEALELLETMLIGDV 312 (689)
Q Consensus 260 ~~~~g~--~~~A~----~~~~~~~~~~~~---~~----------~--------~li~~~~~~g~~~~A~~~~~~m~~~g~ 312 (689)
.-+.+. .++++ ++..-+..+|-. -| . .-..-|.++|+++.|+++++-+.+..-
T Consensus 371 ~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdn 450 (840)
T KOG2003|consen 371 MEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDN 450 (840)
T ss_pred HHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccc
Confidence 111111 11221 111111222210 01 0 112347899999999999988876543
Q ss_pred CcChhhHHHH--HHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHH--
Q 036237 313 LPNDATLVSA--LSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAM-- 388 (689)
Q Consensus 313 ~p~~~t~~~l--l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l-- 388 (689)
+.-+..-+.+ +.-.-...++..|.++-+..+... .-++.....-.+.-...|++++|.+.+++....|...-.+|
T Consensus 451 k~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn 529 (840)
T KOG2003|consen 451 KTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN 529 (840)
T ss_pred hhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH
Confidence 3222222222 222222345667777766655432 11222222222334457999999999999998876654444
Q ss_pred -HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC
Q 036237 389 -IVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTG 467 (689)
Q Consensus 389 -i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 467 (689)
.-.+-..|+.++|++.|-++... +..+......+.+.|....+..+|++++-.... -++-|+.+.+.|.++|-+.|
T Consensus 530 iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dlydqeg 606 (840)
T KOG2003|consen 530 IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLYDQEG 606 (840)
T ss_pred hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHhhccc
Confidence 33467789999999999988753 334556777788888889999999999987762 34445889999999999999
Q ss_pred CHHHHHHHHHh-CC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHH
Q 036237 468 YLEEAKSTIES-MP-MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMM 545 (689)
Q Consensus 468 ~~~~A~~~~~~-~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m 545 (689)
+-..|.+..-. .. ++-+..+..-|..-|....-.+.++..|+++--+.|+...-...++.++.+.|++.+|.++++..
T Consensus 607 dksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~ 686 (840)
T KOG2003|consen 607 DKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDI 686 (840)
T ss_pred chhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 99999987543 33 33366666667777777777899999999999999976555556667778999999999999987
Q ss_pred Hh
Q 036237 546 KK 547 (689)
Q Consensus 546 ~~ 547 (689)
..
T Consensus 687 hr 688 (840)
T KOG2003|consen 687 HR 688 (840)
T ss_pred HH
Confidence 64
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.38 E-value=8.8e-10 Score=116.24 Aligned_cols=285 Identities=10% Similarity=0.035 Sum_probs=166.6
Q ss_pred HhCCChHHHHHHHhhCCC--CCc-chHHHHHHHHHhCCChHHHHHHHhhcCc--CCc--chHHHHHHHHHhcCCHHHHHH
Q 036237 199 VKKGEVEVAMKLFDEMPD--RDL-FSWTCLVDGFSKCGKVEIAREIFYRMPN--RNL--VSWNAMINGYMKAGDVDSACE 271 (689)
Q Consensus 199 ~~~g~~~~A~~~~~~m~~--~d~-~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~--~~~~~li~~~~~~g~~~~A~~ 271 (689)
...|+++.|.+.+.+..+ |+. ..+-....+..+.|+.+.|.+.+.+..+ |+. .+.-.....+...|+++.|..
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 346888888888777654 222 2233344556677888888887777643 332 233334666677777777777
Q ss_pred HHHhcCCC---ChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCc
Q 036237 272 LFDDMEIR---DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFV 348 (689)
Q Consensus 272 ~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~ 348 (689)
.++.+.+. +...+..+...+.+.|++++|.+++..+.+.++.++. .+..+-.
T Consensus 175 ~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~-~~~~l~~------------------------ 229 (409)
T TIGR00540 175 GVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDE-EFADLEQ------------------------ 229 (409)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH-HHHHHHH------------------------
Confidence 77776532 5556667777777777777777777777766532221 1110000
Q ss_pred cchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH---HH
Q 036237 349 VDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITF---IG 422 (689)
Q Consensus 349 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~---~~ 422 (689)
..+..+++.-......+...+.++..+. .++..+..++..+...|+.++|.+++++..+. .||.... ..
T Consensus 230 ---~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l 304 (409)
T TIGR00540 230 ---KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLC 304 (409)
T ss_pred ---HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHH
Confidence 0000011111111223344444444443 36777788888888888888888888888874 4444321 11
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcC
Q 036237 423 VLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIES---MPMRPNFVIWMSLLSGARNHG 499 (689)
Q Consensus 423 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~---~~~~p~~~~~~~ll~~~~~~g 499 (689)
........++.+.+.+.++...+...-.|+.....++...+.+.|++++|.+.|+. ....|+...+..+...+.+.|
T Consensus 305 ~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g 384 (409)
T TIGR00540 305 LPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAG 384 (409)
T ss_pred HHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcC
Confidence 11222334667777777777664322222214555777777777777777777773 234577776667777777777
Q ss_pred ChHHHHHHHHHHhh
Q 036237 500 NKDIGEYAANNLIK 513 (689)
Q Consensus 500 ~~~~a~~~~~~~~~ 513 (689)
+.++|.+++++.+.
T Consensus 385 ~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 385 DKAEAAAMRQDSLG 398 (409)
T ss_pred CHHHHHHHHHHHHH
Confidence 77777777776654
No 46
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.37 E-value=2.4e-12 Score=128.78 Aligned_cols=250 Identities=15% Similarity=0.169 Sum_probs=104.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhc-C----CCChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHccc
Q 036237 256 MINGYMKAGDVDSACELFDDM-E----IRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLA 330 (689)
Q Consensus 256 li~~~~~~g~~~~A~~~~~~~-~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 330 (689)
+..++.+.|++++|.+++++. . ..|+..|..+.......+++++|++.++++...+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 355566667777777777432 2 124555666666666677777777777777765422 33344444444 5667
Q ss_pred chhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcC-----CCChhhHHHHHHHHHHcCCHHHHHHHH
Q 036237 331 VLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS-----KKKVGHWTAMIVGLGMHGMATQALDLF 405 (689)
Q Consensus 331 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~ 405 (689)
++++|.++.....+.. +++..+..++..|.+.|+++++.++++.+. ..+...|..+...+.+.|+.++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7777777766554433 455566677788888888888888888754 246678888889999999999999999
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC
Q 036237 406 NKMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP-MRP 483 (689)
Q Consensus 406 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p 483 (689)
++..+ ..|+ ......++..+...|+.+++.++++...+. .+.+...+..+..+|...|+.++|...+++.- ..|
T Consensus 170 ~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 170 RKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 99988 4675 556778888899999999999988888753 35566778889999999999999999998862 234
Q ss_pred -CHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 036237 484 -NFVIWMSLLSGARNHGNKDIGEYAANNLIK 513 (689)
Q Consensus 484 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 513 (689)
|+.+...+..++...|+.++|..+.+++.+
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 677778889999999999999998887765
No 47
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.37 E-value=3e-10 Score=119.82 Aligned_cols=277 Identities=11% Similarity=0.040 Sum_probs=186.2
Q ss_pred HhcCChHHHHHHHhhCCCC--Ce-ehHHHHHHHHHhCCChHHHHHHHhhCCC--CCcc--hHHHHHHHHHhCCChHHHHH
Q 036237 168 AKFGEIDLGRRVFDAMDDK--DL-VSWNCLIDGYVKKGEVEVAMKLFDEMPD--RDLF--SWTCLVDGFSKCGKVEIARE 240 (689)
Q Consensus 168 ~~~g~~~~A~~~~~~m~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~--~d~~--~~~~li~~~~~~g~~~~A~~ 240 (689)
...|+++.|++.+.+..+. +. ..+-.....+.+.|+.+.|...+.+..+ |+.. ........+...|+++.|..
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 3679999999999887653 22 2334445677888999999999999754 4442 33345778889999999999
Q ss_pred HHhhcCcC---CcchHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChHHHHHHH----HHHHHcCChHHHHHHHHHhccC
Q 036237 241 IFYRMPNR---NLVSWNAMINGYMKAGDVDSACELFDDMEIR---DLITWNSMI----AGYELNGRFMEALELLETMLIG 310 (689)
Q Consensus 241 ~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~ 310 (689)
.++.+.+. ++.+...+...|...|++++|.+.+..+.+. +...+..+- .+....+..+++.+.+..+...
T Consensus 175 ~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~ 254 (409)
T TIGR00540 175 GVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN 254 (409)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 99999863 4678889999999999999999999988754 222232111 1112222222222222222221
Q ss_pred CCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCChhhH-----
Q 036237 311 DVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHW----- 385 (689)
Q Consensus 311 g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----- 385 (689)
. |+ ..+.++..+..+...+...|+.++|.+++++..+..+...
T Consensus 255 ~--p~------------------------------~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~ 302 (409)
T TIGR00540 255 Q--PR------------------------------HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP 302 (409)
T ss_pred C--CH------------------------------HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH
Confidence 1 10 0113556666677777777777777777777665222211
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 036237 386 TAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI---TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDI 462 (689)
Q Consensus 386 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 462 (689)
..........++.+++++.+++..+ ..|+.. ...++...|.+.|++++|.++|+... .....|+...+..+...
T Consensus 303 ~l~~~~~l~~~~~~~~~~~~e~~lk--~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~-a~~~~p~~~~~~~La~l 379 (409)
T TIGR00540 303 LCLPIPRLKPEDNEKLEKLIEKQAK--NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVA-ACKEQLDANDLAMAADA 379 (409)
T ss_pred HHHHhhhcCCCChHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhH-HhhcCCCHHHHHHHHHH
Confidence 2222223345777888888888776 355544 45577788899999999999998533 22567888888899999
Q ss_pred HHhcCCHHHHHHHHHhC
Q 036237 463 LCRTGYLEEAKSTIESM 479 (689)
Q Consensus 463 ~~~~g~~~~A~~~~~~~ 479 (689)
+.+.|+.++|.+++++.
T Consensus 380 l~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 380 FDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 99999999999998863
No 48
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=6e-09 Score=102.94 Aligned_cols=342 Identities=14% Similarity=0.134 Sum_probs=228.6
Q ss_pred HHHHhCCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHhhcCcCC-cchHHHHHHHHHhcCCHHHHHHHHH
Q 036237 196 DGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRN-LVSWNAMINGYMKAGDVDSACELFD 274 (689)
Q Consensus 196 ~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~ 274 (689)
..+.+.|....|+..|......-+..|.+-+....-.-+.+.+..+........ .-.---+..+|-...+.+++..-.+
T Consensus 172 vv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e 251 (559)
T KOG1155|consen 172 VVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQKKE 251 (559)
T ss_pred HHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666666555444444444443333333333333322221110 0000112334444444555544433
Q ss_pred hcCCC----ChHHHHHHHHHHHHcCChHHHHHHHHHhccCCC--CcChhhHHHHHHHHHcccchhh-HHHHHHHHHHhCC
Q 036237 275 DMEIR----DLITWNSMIAGYELNGRFMEALELLETMLIGDV--LPNDATLVSALSAVAGLAVLNK-GRWMHSYIVKNGF 347 (689)
Q Consensus 275 ~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~a~~~~~~~~~-a~~i~~~~~~~g~ 347 (689)
..... +...-+....+.-...++++|+.+|+++.+... --|..+|+.+|-.-.....+.- |..++ .+ .
T Consensus 252 ~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~-~i--d-- 326 (559)
T KOG1155|consen 252 RLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVS-NI--D-- 326 (559)
T ss_pred HHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHH-Hh--c--
Confidence 33221 122222223344456788999999999887632 1255677776654332221111 11111 11 1
Q ss_pred ccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 036237 348 VVDGVLGTLLIQMYSKCGSIESALTVFRAISKK---KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKP-TAITFIGV 423 (689)
Q Consensus 348 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~l 423 (689)
.-.+.+...+.+-|+-.++.++|...|++..+- ....|+.|..-|...++...|++-++...+ +.| |...|-.|
T Consensus 327 KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGL 404 (559)
T KOG1155|consen 327 KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGL 404 (559)
T ss_pred cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhh
Confidence 223556777888889999999999999998763 456899999999999999999999999998 444 56689999
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCC
Q 036237 424 LNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESMP--MRPNFVIWMSLLSGARNHGN 500 (689)
Q Consensus 424 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~ 500 (689)
..+|.-.+...=|+-+|++.. .+.|+ ...|.+|.+.|.+.+++++|++.|.+.- ...+...+..|...+-+.++
T Consensus 405 GQaYeim~Mh~YaLyYfqkA~---~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d 481 (559)
T KOG1155|consen 405 GQAYEIMKMHFYALYYFQKAL---ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKD 481 (559)
T ss_pred hHHHHHhcchHHHHHHHHHHH---hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHh
Confidence 999999999999999999998 45665 7999999999999999999999999872 23355789999999999999
Q ss_pred hHHHHHHHHHHhh-------cCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 501 KDIGEYAANNLIK-------VAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 501 ~~~a~~~~~~~~~-------~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
.++|...+++-++ .+|....+..-|+.-+.+.+++++|..+......
T Consensus 482 ~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 482 LNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 9999999999887 4455555666788889999999999887765443
No 49
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.35 E-value=3.7e-08 Score=97.59 Aligned_cols=453 Identities=12% Similarity=0.093 Sum_probs=325.5
Q ss_pred CChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 036237 85 PSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLV 164 (689)
Q Consensus 85 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 164 (689)
-+...|---..-=-..++...|..+|++.+... .-+...|...+..=.+...+..|+.++++++..= +.-...|--.+
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~ 148 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHH
Confidence 344556555555556788899999999998654 2244455556666667888999999999998763 22223566666
Q ss_pred HHHHhcCChHHHHHHHhhCC--CCCeehHHHHHHHHHhCCChHHHHHHHhhCC--CCCcchHHHHHHHHHhCCChHHHHH
Q 036237 165 SMYAKFGEIDLGRRVFDAMD--DKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP--DRDLFSWTCLVDGFSKCGKVEIARE 240 (689)
Q Consensus 165 ~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~d~~~~~~li~~~~~~g~~~~A~~ 240 (689)
.|=-..|++..|+++|++-. +|+..+|++.|..-.+...++.|..++++.. .|++.+|--....=.+.|....|..
T Consensus 149 ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~ 228 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARS 228 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHH
Confidence 67777899999999999765 6999999999999999999999999999975 4899999888888889999999999
Q ss_pred HHhhcCc--C----CcchHHHHHHHHHhcCCHHHHHHHHHhcC----CC-ChHHHHHHHHHHHHcCCh---HHHHHH---
Q 036237 241 IFYRMPN--R----NLVSWNAMINGYMKAGDVDSACELFDDME----IR-DLITWNSMIAGYELNGRF---MEALEL--- 303 (689)
Q Consensus 241 ~~~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~---~~A~~~--- 303 (689)
+|+.+.+ . +...+.+....=.++..++.|.-+|.-.. +. ....|.....-=-+-|+. ++++--
T Consensus 229 VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk 308 (677)
T KOG1915|consen 229 VYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRK 308 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhh
Confidence 9998875 1 24455555555567788888888876543 22 233444444333344553 333322
Q ss_pred --HHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccch------hHHhHHHh---hHHhcCCHHHHHH
Q 036237 304 --LETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDG------VLGTLLIQ---MYSKCGSIESALT 372 (689)
Q Consensus 304 --~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~------~~~~~li~---~~~~~g~~~~A~~ 372 (689)
|+.++..+ +-|-.++--.+..-...|+.+...++++.++..-.+... .+|--+=- .-....+.+.+.+
T Consensus 309 ~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~ 387 (677)
T KOG1915|consen 309 FQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQ 387 (677)
T ss_pred hHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 33344332 456677777888888889999999999998865433221 12211111 1134578888899
Q ss_pred HHHhcCC--C-Chh----hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 036237 373 VFRAISK--K-KVG----HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN 445 (689)
Q Consensus 373 ~~~~~~~--~-~~~----~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 445 (689)
+|+...+ | .-. .|-.....-.++.+...|.+++-..+ |..|-..+|...|..-.+.+.+|..+.+|+..+.
T Consensus 388 vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle 465 (677)
T KOG1915|consen 388 VYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE 465 (677)
T ss_pred HHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9887665 2 223 34444555567888999999988776 6889999999999999999999999999999983
Q ss_pred hcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCch
Q 036237 446 DYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESMPMRPN----FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIG 520 (689)
Q Consensus 446 ~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 520 (689)
..|. ..+|......=...|+.+.|..+|.-+-.+|. ...|-+.|.--...|.++.|..+++++++..+...
T Consensus 466 ---~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k- 541 (677)
T KOG1915|consen 466 ---FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK- 541 (677)
T ss_pred ---cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-
Confidence 4454 67788888888889999999999988754553 44677777777788999999999999999887543
Q ss_pred hHHHHHHHHH-----hcC-----------CcchHHHHHHHHH
Q 036237 521 CYVVLSNIYA-----AAG-----------QWDKVSEVREMMK 546 (689)
Q Consensus 521 ~~~~L~~~~~-----~~g-----------~~~~A~~~~~~m~ 546 (689)
++...+.--. +.| ....|..+|++..
T Consensus 542 vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 542 VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 5555554433 233 4556777777654
No 50
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.35 E-value=9.8e-10 Score=103.61 Aligned_cols=277 Identities=13% Similarity=0.153 Sum_probs=154.1
Q ss_pred CChHHHHHHHhhCCCCCcchH---HHHHHHHHhCCChHHHHHHHhhcCc-CC------cchHHHHHHHHHhcCCHHHHHH
Q 036237 202 GEVEVAMKLFDEMPDRDLFSW---TCLVDGFSKCGKVEIAREIFYRMPN-RN------LVSWNAMINGYMKAGDVDSACE 271 (689)
Q Consensus 202 g~~~~A~~~~~~m~~~d~~~~---~~li~~~~~~g~~~~A~~~~~~~~~-~~------~~~~~~li~~~~~~g~~~~A~~ 271 (689)
.+.++|.++|-+|.+.|..|+ -+|.+.|.+.|..|.|+++++.+.+ || ..+...|..-|.+.|-+|.|+.
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 455666666666665544433 3566777788888888888877765 33 3344567778889999999999
Q ss_pred HHHhcCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCc
Q 036237 272 LFDDMEIRD---LITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFV 348 (689)
Q Consensus 272 ~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~ 348 (689)
+|..+.+.+ ......|+..|-+..+|++|++.-+++.+.+-++..+-..
T Consensus 129 ~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIA---------------------------- 180 (389)
T COG2956 129 IFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIA---------------------------- 180 (389)
T ss_pred HHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHH----------------------------
Confidence 999887643 3456678889999999999999999888766544433211
Q ss_pred cchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCC---hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036237 349 VDGVLGTLLIQMYSKCGSIESALTVFRAISKKK---VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN 425 (689)
Q Consensus 349 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 425 (689)
..|.-|...+....+.+.|..++.+..+.| +..--.+...+...|++..|++.++...+.+..--..+...|..
T Consensus 181 ---qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~ 257 (389)
T COG2956 181 ---QFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYE 257 (389)
T ss_pred ---HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 112223333333444444555554444322 22222334445555666666666555555322212234455555
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc---CCh
Q 036237 426 ACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKST-IESMPMRPNFVIWMSLLSGARNH---GNK 501 (689)
Q Consensus 426 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~ll~~~~~~---g~~ 501 (689)
+|.+.|+.+++...+..+.. ..+....-..+.+.-....-.+.|... .+.+.-+|+...+..|+..-... |..
T Consensus 258 ~Y~~lg~~~~~~~fL~~~~~---~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~ 334 (389)
T COG2956 258 CYAQLGKPAEGLNFLRRAME---TNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRA 334 (389)
T ss_pred HHHHhCCHHHHHHHHHHHHH---ccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccch
Confidence 56666666666655555552 223333333344433333333333333 33344556666666666554332 223
Q ss_pred HHHHHHHHHHh
Q 036237 502 DIGEYAANNLI 512 (689)
Q Consensus 502 ~~a~~~~~~~~ 512 (689)
.+....++.++
T Consensus 335 k~sL~~lr~mv 345 (389)
T COG2956 335 KESLDLLRDMV 345 (389)
T ss_pred hhhHHHHHHHH
Confidence 33344444444
No 51
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.34 E-value=2.2e-07 Score=95.81 Aligned_cols=387 Identities=11% Similarity=0.078 Sum_probs=225.4
Q ss_pred hcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCeehHHHHHHHHHhCCChHHHHHH
Q 036237 134 RLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD---KDLVSWNCLIDGYVKKGEVEVAMKL 210 (689)
Q Consensus 134 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~ 210 (689)
...+.+.|+.++.++++.- +.+...|. +|++..-++.|.+++....+ .+...|.+-...--.+|..+...++
T Consensus 388 elE~~~darilL~rAvecc-p~s~dLwl----AlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~ki 462 (913)
T KOG0495|consen 388 ELEEPEDARILLERAVECC-PQSMDLWL----ALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKI 462 (913)
T ss_pred hccChHHHHHHHHHHHHhc-cchHHHHH----HHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence 3344444555555555442 22222332 23334445555555544432 3555555555555555665555555
Q ss_pred HhhCCC--------CCcchHHHHHHHHHhCCChHHHHHHHhhcCcC------CcchHHHHHHHHHhcCCHHHHHHHHHhc
Q 036237 211 FDEMPD--------RDLFSWTCLVDGFSKCGKVEIAREIFYRMPNR------NLVSWNAMINGYMKAGDVDSACELFDDM 276 (689)
Q Consensus 211 ~~~m~~--------~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~~ 276 (689)
.++-.. -+...|-.=...|-..|..-.+..+....+.- -..+|+.-.+.|.+.+.++-|..+|...
T Consensus 463 i~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~a 542 (913)
T KOG0495|consen 463 IDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHA 542 (913)
T ss_pred HHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHH
Confidence 544321 12233333333444444444444443333321 1345666666677777777777777665
Q ss_pred CC---CChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhH
Q 036237 277 EI---RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVL 353 (689)
Q Consensus 277 ~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~ 353 (689)
.+ .+...|...+..--..|..++-..+|++....- +-....+.......-..|+...|+.++..+.+.... +..+
T Consensus 543 lqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seei 620 (913)
T KOG0495|consen 543 LQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEI 620 (913)
T ss_pred HhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHH
Confidence 53 245566666665566677777777777776542 223333334444455567777777777777766533 5666
Q ss_pred HhHHHhhHHhcCCHHHHHHHHHhcCC--CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcc
Q 036237 354 GTLLIQMYSKCGSIESALTVFRAISK--KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI-TFIGVLNACSHA 430 (689)
Q Consensus 354 ~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~ 430 (689)
+-+-+..-.....++.|+.+|.+... +....|.--+...--.++.++|++++++..+ .-|+.. .|..+...+.+.
T Consensus 621 wlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e~~ 698 (913)
T KOG0495|consen 621 WLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQIEEQM 698 (913)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHHHHHH
Confidence 77777777777777777777776654 4455666666666666777777777777766 355543 566666677777
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHH
Q 036237 431 GLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPM--RPNFVIWMSLLSGARNHGNKDIGEYAA 508 (689)
Q Consensus 431 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~ 508 (689)
++++.|+..|..-.+ ..+-.+..|-.|.++=.+.|.+-.|..++++... +.|...|...+..-.+.|+.+.|..+.
T Consensus 699 ~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lm 776 (913)
T KOG0495|consen 699 ENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLM 776 (913)
T ss_pred HHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHH
Confidence 777777777765542 2333356677777777777777777777777632 236667777777777777777777777
Q ss_pred HHHhhcCCCCchhHHHHHHHHHh
Q 036237 509 NNLIKVAPDTIGCYVVLSNIYAA 531 (689)
Q Consensus 509 ~~~~~~~p~~~~~~~~L~~~~~~ 531 (689)
.++++.-|.+...+..-+.+.-+
T Consensus 777 akALQecp~sg~LWaEaI~le~~ 799 (913)
T KOG0495|consen 777 AKALQECPSSGLLWAEAIWLEPR 799 (913)
T ss_pred HHHHHhCCccchhHHHHHHhccC
Confidence 77766655544333333333333
No 52
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.32 E-value=3.2e-10 Score=110.05 Aligned_cols=197 Identities=12% Similarity=0.042 Sum_probs=163.8
Q ss_pred chhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036237 350 DGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNA 426 (689)
Q Consensus 350 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 426 (689)
....+..+...|...|++++|.+.|++... .+...+..+...|...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 355667788889999999999999987764 346678888999999999999999999998753 3345577778888
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHH
Q 036237 427 CSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIG 504 (689)
Q Consensus 427 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 504 (689)
+...|++++|...++..............+..+...+.+.|++++|...+++. ...| +...|..+...+...|+++.|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999853222233567778899999999999999999886 2334 466888899999999999999
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 505 EYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 505 ~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
...++++++..|+++..+..++.++...|+.++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999888888888999999999999999999887764
No 53
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.27 E-value=1.4e-07 Score=96.97 Aligned_cols=482 Identities=14% Similarity=0.155 Sum_probs=240.6
Q ss_pred HHHHHhhcccccCCCCHHHHHHHHhcccC----CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHH
Q 036237 55 ISSRLLSLYVDPHINNLHYARSIFDRILQ----HPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIK 130 (689)
Q Consensus 55 ~~~~ll~~~~~~~~g~~~~A~~~f~~~~~----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 130 (689)
+|-.-+....+ .|++..-+++|+.... ......|...+......|-++-++.+|++.++. .|. .-+-.+.
T Consensus 104 Iwl~Ylq~l~~--Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~--~~eeyie 177 (835)
T KOG2047|consen 104 IWLDYLQFLIK--QGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APE--AREEYIE 177 (835)
T ss_pred HHHHHHHHHHh--cchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHH--HHHHHHH
Confidence 33334444555 7788888888876432 233456888888888888888888888888764 232 2555667
Q ss_pred HHHhcCChHHHHHHHHHHHHhC------CCCchhHHHHHHHHHHhcCCh---HHHHHHHhhCCCC--C--eehHHHHHHH
Q 036237 131 GAARLGAIKEGKQIHGLVFKLG------FGFDKFVLSSLVSMYAKFGEI---DLGRRVFDAMDDK--D--LVSWNCLIDG 197 (689)
Q Consensus 131 ~~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~--~--~~~~~~li~~ 197 (689)
.++..+++++|.+.++.++... -+.+...|.-+-+..++.-+. -....+++.+..+ | ...|++|.+-
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 7778888888888887765331 144555677666666654432 2344455555432 2 3579999999
Q ss_pred HHhCCChHHHHHHHhhCCCC--CcchHHHHHHHHHhCC----------------C------hHHHHHHHhhcCcCCcchH
Q 036237 198 YVKKGEVEVAMKLFDEMPDR--DLFSWTCLVDGFSKCG----------------K------VEIAREIFYRMPNRNLVSW 253 (689)
Q Consensus 198 ~~~~g~~~~A~~~~~~m~~~--d~~~~~~li~~~~~~g----------------~------~~~A~~~~~~~~~~~~~~~ 253 (689)
|.+.|.++.|..+|++.... .+.-|+.+.++|++-. + ++-...-|+.+....+...
T Consensus 258 YIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~l 337 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLL 337 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHH
Confidence 99999999999999887652 2233444444433211 1 1122222332222111111
Q ss_pred HHHH-------------HHHHhcCCHHHHHHHHHhcCCC---------ChHHHHHHHHHHHHcCChHHHHHHHHHhccCC
Q 036237 254 NAMI-------------NGYMKAGDVDSACELFDDMEIR---------DLITWNSMIAGYELNGRFMEALELLETMLIGD 311 (689)
Q Consensus 254 ~~li-------------~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 311 (689)
|+++ ..-.-.|+..+-..+|.+.... -...|-.+...|-.+|+.+.|..+|++..+..
T Consensus 338 NsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~ 417 (835)
T KOG2047|consen 338 NSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP 417 (835)
T ss_pred HHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC
Confidence 1100 0000112222223333322110 11235555555555555555555555554322
Q ss_pred CCcChhhHHHHHHHH----HcccchhhHHHHHHHHHHh-----------CCcc------chhHHhHHHhhHHhcCCHHHH
Q 036237 312 VLPNDATLVSALSAV----AGLAVLNKGRWMHSYIVKN-----------GFVV------DGVLGTLLIQMYSKCGSIESA 370 (689)
Q Consensus 312 ~~p~~~t~~~ll~a~----~~~~~~~~a~~i~~~~~~~-----------g~~~------~~~~~~~li~~~~~~g~~~~A 370 (689)
.+ ...-...+-..+ .+..+++.|..+.+.+... +.++ +..+|+..++.--..|-++..
T Consensus 418 y~-~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfest 496 (835)
T KOG2047|consen 418 YK-TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFEST 496 (835)
T ss_pred cc-chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHH
Confidence 11 111111111111 1222333444433332210 0111 223344444544555666666
Q ss_pred HHHHHhcCCCChhhHHHH---HHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHh---ccCcHHHHHHHHHHh
Q 036237 371 LTVFRAISKKKVGHWTAM---IVGLGMHGMATQALDLFNKMCRMGMKPTAI-TFIGVLNACS---HAGLVNDGRRYFNMM 443 (689)
Q Consensus 371 ~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~---~~g~~~~a~~~~~~~ 443 (689)
..+++++.+-.+.|=..+ ...+-.+.-++++.+.+++-+..=-.|+.. .|+..|.-+. ....++.|+.+|++.
T Consensus 497 k~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqa 576 (835)
T KOG2047|consen 497 KAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQA 576 (835)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 666666654222221111 112334555666666666654432234433 3333333222 234567777777777
Q ss_pred HHhcCCCCCh--hHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 036237 444 INDYGIEPTI--EHYGCLVDILCRTGYLEEAKSTIESMP--MRPN--FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPD 517 (689)
Q Consensus 444 ~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 517 (689)
.+ +.+|.. ..|-.....=.+-|....|+++++++. +++. ...|+..|.--...=-+..-..+|+++++.-|+
T Consensus 577 L~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~ 654 (835)
T KOG2047|consen 577 LD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPD 654 (835)
T ss_pred Hh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCCh
Confidence 63 555542 222222233334566667777777663 2221 235555555433333344556667777776665
Q ss_pred Cchh--HHHHHHHHHhcCCcchHHHHHHHH
Q 036237 518 TIGC--YVVLSNIYAAAGQWDKVSEVREMM 545 (689)
Q Consensus 518 ~~~~--~~~L~~~~~~~g~~~~A~~~~~~m 545 (689)
+-.- -...+++=.+.|..+.|+.++..-
T Consensus 655 ~~~r~mclrFAdlEtklGEidRARaIya~~ 684 (835)
T KOG2047|consen 655 SKAREMCLRFADLETKLGEIDRARAIYAHG 684 (835)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHhh
Confidence 4322 223445555667777777766543
No 54
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=6.2e-08 Score=98.83 Aligned_cols=182 Identities=11% Similarity=0.151 Sum_probs=122.3
Q ss_pred hHHHhhHHhcCCHHHHHHHHHhcCCCC-hhhHHHHHHHH--HHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhc
Q 036237 355 TLLIQMYSKCGSIESALTVFRAISKKK-VGHWTAMIVGL--GMHGMATQALDLFNKMCRMGMKPTA--ITFIGVLNACSH 429 (689)
Q Consensus 355 ~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~--~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~ 429 (689)
+.++.+|. +..+.+.++-...+... ...+.+++... .+...+.+|.+++....+. .|.. +.....+.-...
T Consensus 313 ~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is 388 (652)
T KOG2376|consen 313 NALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKIS 388 (652)
T ss_pred HHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHh
Confidence 45556654 55667777777766533 23344444433 2233577888888887763 4444 344445566778
Q ss_pred cCcHHHHHHHHH--------HhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCCH-HHHHHHH
Q 036237 430 AGLVNDGRRYFN--------MMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM--------PMRPNF-VIWMSLL 492 (689)
Q Consensus 430 ~g~~~~a~~~~~--------~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~~-~~~~~ll 492 (689)
.|+++.|.+++. .+. +.+.. +.+..+++.+|.+.+.-+-|..++++. ..++.. .+|.-+.
T Consensus 389 ~gn~~~A~~il~~~~~~~~ss~~-~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa 465 (652)
T KOG2376|consen 389 QGNPEVALEILSLFLESWKSSIL-EAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAA 465 (652)
T ss_pred cCCHHHHHHHHHHHhhhhhhhhh-hhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHh
Confidence 999999999998 444 23334 445667889999999877777777665 222222 2344444
Q ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHH
Q 036237 493 SGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREM 544 (689)
Q Consensus 493 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~ 544 (689)
.--.++|+.++|...++++++.+|++..+...+..+|++. +.+.|..+-+.
T Consensus 466 ~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 466 EFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 4456779999999999999999999999999999999876 34566655443
No 55
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.24 E-value=9.2e-09 Score=100.27 Aligned_cols=277 Identities=12% Similarity=0.084 Sum_probs=178.5
Q ss_pred cCCHHHHHHHHHhcCCC---ChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHH
Q 036237 263 AGDVDSACELFDDMEIR---DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMH 339 (689)
Q Consensus 263 ~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~ 339 (689)
.|++..|+++..+-.+. .+..|..-+.+--+.|+.+.+-.++.+.-+.--.++...+.+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 57788888877765432 334444455566667778888888777765322333344444455566777777777777
Q ss_pred HHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCCh-----------hhHHHHHHHHHHcCCHHHHHHHHHHH
Q 036237 340 SYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKV-----------GHWTAMIVGLGMHGMATQALDLFNKM 408 (689)
Q Consensus 340 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~A~~l~~~m 408 (689)
..+.+.+ +.++.+.....+.|.+.|++.....++..+.+... .+|+.++.-....+..+.-...|+..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 7776665 33466667777778888888888888777776322 24555555555444444444455554
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHH
Q 036237 409 CRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM--PMRPNFV 486 (689)
Q Consensus 409 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~ 486 (689)
... .+-+...-.+++.-+.+.|+.++|.++..+..++ +..|+... ++ ...+-++.+.=.+..++- ..+.++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L~~---~~-~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRLCR---LI-PRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhHHH---HH-hhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 432 3444555556666677777888887777777643 55555111 11 122333333333332221 1123457
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 487 IWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 487 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
.+.+|...|.+++.+.+|...++.+++..| +...|..++.+|.+.|+..+|.+++++...
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 888999999999999999999999999888 457899999999999999999999887653
No 56
>PF13041 PPR_2: PPR repeat family
Probab=99.23 E-value=1.4e-11 Score=86.60 Aligned_cols=50 Identities=36% Similarity=0.589 Sum_probs=45.9
Q ss_pred CChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHh
Q 036237 85 PSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAAR 134 (689)
Q Consensus 85 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 134 (689)
||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999998874
No 57
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.22 E-value=4.3e-10 Score=118.96 Aligned_cols=267 Identities=13% Similarity=0.135 Sum_probs=196.6
Q ss_pred HHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCC
Q 036237 302 ELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKK 381 (689)
Q Consensus 302 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 381 (689)
.++..+...|+.|+.+||.+++..|+..|+.+.|- ++..|.-...+.+..+++.++......++.+.+. ++.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45677888999999999999999999999999999 9999999999999999999999999998887665 678
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 036237 382 VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVD 461 (689)
Q Consensus 382 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 461 (689)
..+|+.|..+|.++|+..- ++..++ -...+...++..|.-..-..++..+.-..+.-||. ...+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHH
Confidence 8899999999999999866 333333 12234455666666666666665544333455554 34566
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHH
Q 036237 462 ILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG-NKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSE 540 (689)
Q Consensus 462 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~ 540 (689)
.+.-.|.++.+.+++..+|...-......++.-+..-. .++.-..+.+...+ .| ++.+|..+...-..+|+.+.|..
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~-~s~~l~a~l~~alaag~~d~Ak~ 225 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-AP-TSETLHAVLKRALAAGDVDGAKN 225 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CC-ChHHHHHHHHHHHhcCchhhHHH
Confidence 77788999999999999873321111222344444433 33433334444444 45 67899999999999999999999
Q ss_pred HHHHHHhCCCccCCcccEEEECCEEEEEeeCCCCCcChHHHHHHHHHHHHHHHHCCCCCCCccccccc
Q 036237 541 VREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGHVPDTTQVLLCI 608 (689)
Q Consensus 541 ~~~~m~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~ 608 (689)
++.+|+++|+.-.+.+.|-.+-+ .+ ...-++.+.+-|++.|+.||..+...-+
T Consensus 226 ll~emke~gfpir~HyFwpLl~g------~~---------~~q~~e~vlrgmqe~gv~p~seT~adyv 278 (1088)
T KOG4318|consen 226 LLYEMKEKGFPIRAHYFWPLLLG------IN---------AAQVFEFVLRGMQEKGVQPGSETQADYV 278 (1088)
T ss_pred HHHHHHHcCCCcccccchhhhhc------Cc---------cchHHHHHHHHHHHhcCCCCcchhHHHH
Confidence 99999999999888888865443 11 1233467788899999999999875433
No 58
>PF13041 PPR_2: PPR repeat family
Probab=99.21 E-value=3.6e-11 Score=84.49 Aligned_cols=50 Identities=28% Similarity=0.459 Sum_probs=46.5
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 036237 380 KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSH 429 (689)
Q Consensus 380 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 429 (689)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999999999874
No 59
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.21 E-value=9.6e-09 Score=97.06 Aligned_cols=285 Identities=14% Similarity=0.111 Sum_probs=179.4
Q ss_pred CHHHHHHHHHhcCCCChHHH---HHHHHHHHHcCChHHHHHHHHHhccCCCCcChh------hHHHHHHHHHcccchhhH
Q 036237 265 DVDSACELFDDMEIRDLITW---NSMIAGYELNGRFMEALELLETMLIGDVLPNDA------TLVSALSAVAGLAVLNKG 335 (689)
Q Consensus 265 ~~~~A~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------t~~~ll~a~~~~~~~~~a 335 (689)
+.++|.++|-+|.+.|..++ -+|.+.|.+.|..+.|+.+-+.+... ||.. ..-.+..-|...|-+|.|
T Consensus 50 Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 50 QPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred CcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 44444444444444333322 23444455555555555555444432 2211 111223334445555555
Q ss_pred HHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCChh--------hHHHHHHHHHHcCCHHHHHHHHHH
Q 036237 336 RWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVG--------HWTAMIVGLGMHGMATQALDLFNK 407 (689)
Q Consensus 336 ~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~li~~~~~~g~~~~A~~l~~~ 407 (689)
+.+|..+.+.+. .-......|+..|-+..+|++|+++-+++.+-+.. .|--+...+....+.+.|..++.+
T Consensus 127 E~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 555555554331 12334455777788888888888877766543222 344556666677899999999999
Q ss_pred HHHCCCCCCHHHH-HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH
Q 036237 408 MCRMGMKPTAITF-IGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRPNF 485 (689)
Q Consensus 408 m~~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~ 485 (689)
..+. .|+.+-- ..+.......|+++.|.+.++.+.+. ...--..+...|..+|...|+.++...++.++ ...+..
T Consensus 206 Alqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 206 ALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 9884 5665533 34457788999999999999999843 32333677888999999999999999999876 344555
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHH---hcCCcchHHHHHHHHHhCCCccCCccc
Q 036237 486 VIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYA---AAGQWDKVSEVREMMKKRGFRKDPGSS 557 (689)
Q Consensus 486 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~---~~g~~~~A~~~~~~m~~~~~~~~~~~~ 557 (689)
..-..+..--....-.+.|...+.+-+...|.- ..+..|+..-. ..|++.+...++..|....++..|.+-
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~-~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YR 356 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRRKPTM-RGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYR 356 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcH-HHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCce
Confidence 555555555555556778888888888888854 44555555432 356788888899999877777666543
No 60
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.20 E-value=3.9e-09 Score=110.27 Aligned_cols=191 Identities=13% Similarity=0.187 Sum_probs=141.6
Q ss_pred HHHhhHHhcCCHHHHHHHHHhcCC-------C-C---hhhHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCC-HH
Q 036237 356 LLIQMYSKCGSIESALTVFRAISK-------K-K---VGHWTAMIVGLGMHGMATQALDLFNKMCR-----MGMKPT-AI 418 (689)
Q Consensus 356 ~li~~~~~~g~~~~A~~~~~~~~~-------~-~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~-~~ 418 (689)
.+...|...+++++|..+|+++.. + + ..+++.|...|...|++++|...+++..+ .|..+. ..
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~ 325 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA 325 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 456667777777777777776643 1 1 23677777788888888887777666543 232222 22
Q ss_pred -HHHHHHHHHhccCcHHHHHHHHHHhHHhcC--CCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC---------CCC
Q 036237 419 -TFIGVLNACSHAGLVNDGRRYFNMMINDYG--IEPT----IEHYGCLVDILCRTGYLEEAKSTIESM---------PMR 482 (689)
Q Consensus 419 -t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~ 482 (689)
-++.+...|...+.+++|..+++...+.+. +.++ ..+++.|..+|...|++++|.++++++ ...
T Consensus 326 ~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~ 405 (508)
T KOG1840|consen 326 AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD 405 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence 466677789999999999999987765443 2232 468999999999999999999999887 112
Q ss_pred CC-HHHHHHHHHHHHhcCChHHHHHHHHHHhh----cCCC---CchhHHHHHHHHHhcCCcchHHHHHHHHH
Q 036237 483 PN-FVIWMSLLSGARNHGNKDIGEYAANNLIK----VAPD---TIGCYVVLSNIYAAAGQWDKVSEVREMMK 546 (689)
Q Consensus 483 p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~p~---~~~~~~~L~~~~~~~g~~~~A~~~~~~m~ 546 (689)
+. ...++.|..+|.+.+++++|.++|.+... ..|+ ...+|..|+.+|...|++++|.++.+...
T Consensus 406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 406 YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 22 44678899999999999999999988765 3344 45578899999999999999999998875
No 61
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.14 E-value=1.2e-07 Score=92.52 Aligned_cols=279 Identities=13% Similarity=0.112 Sum_probs=192.7
Q ss_pred CCChHHHHHHHhhCCCC---CcchHHHHHHHHHhCCChHHHHHHHhhcCcC----CcchHHHHHHHHHhcCCHHHHHHHH
Q 036237 201 KGEVEVAMKLFDEMPDR---DLFSWTCLVDGFSKCGKVEIAREIFYRMPNR----NLVSWNAMINGYMKAGDVDSACELF 273 (689)
Q Consensus 201 ~g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~ 273 (689)
.|++..|.++..+-.+. ....|..-..+.-+.|+.+.+-.++.++.+. ...++-+........|+++.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 58999999998886552 2334555556677889999999998888764 2556666777788888888888776
Q ss_pred HhcC---CCChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccc
Q 036237 274 DDME---IRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVD 350 (689)
Q Consensus 274 ~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~ 350 (689)
+++. .+++........+|.+.|++.+...+...|.+.|+--|+..- ++ .
T Consensus 177 ~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-----------------~l-----------e 228 (400)
T COG3071 177 DQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-----------------RL-----------E 228 (400)
T ss_pred HHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-----------------HH-----------H
Confidence 6654 457788888888899999999999998888887765443210 00 0
Q ss_pred hhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036237 351 GVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNAC 427 (689)
Q Consensus 351 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 427 (689)
..++..+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++.++..+.+..|+-. .+-.+
T Consensus 229 ~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~ 304 (400)
T COG3071 229 QQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPR 304 (400)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhh
Confidence 11222333333333333333334444442 345566666777777888888888888877777777622 22356
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHH
Q 036237 428 SHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRPNFVIWMSLLSGARNHGNKDIGEY 506 (689)
Q Consensus 428 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~ 506 (689)
.+.++...-++..+...+.++..| ..+.+|...|.+.+.|.+|.+.|+.. +.+|+..+|+-+..++.+.|+.+.|.+
T Consensus 305 l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~ 382 (400)
T COG3071 305 LRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQ 382 (400)
T ss_pred cCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHH
Confidence 667777777777777665444444 67778888888888888888888864 567888888888888888888888888
Q ss_pred HHHHHhh
Q 036237 507 AANNLIK 513 (689)
Q Consensus 507 ~~~~~~~ 513 (689)
..++.+-
T Consensus 383 ~r~e~L~ 389 (400)
T COG3071 383 VRREALL 389 (400)
T ss_pred HHHHHHH
Confidence 8887764
No 62
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=5.1e-07 Score=88.23 Aligned_cols=266 Identities=9% Similarity=0.018 Sum_probs=197.5
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHH---HHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHH
Q 036237 248 RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNS---MIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALS 324 (689)
Q Consensus 248 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 324 (689)
.|+....++.+.|...|+.++|+..|++...-|+.+... ..-.+.+.|+.++...+...+.... +-....|..-+.
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~ 308 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQ 308 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhh
Confidence 568888999999999999999999999877655443332 2334567888888888877776421 122223333333
Q ss_pred HHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHH
Q 036237 325 AVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQA 401 (689)
Q Consensus 325 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 401 (689)
......+++.|..+-+..++.+. .+...+-.-...+...|+.++|.-.|+.... -+..+|..|+.+|...|++.+|
T Consensus 309 ~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA 387 (564)
T KOG1174|consen 309 LLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEA 387 (564)
T ss_pred hhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHH
Confidence 44456677777777777666542 2333443345667788999999999998764 3788999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHH-HHHh-ccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHh
Q 036237 402 LDLFNKMCRMGMKPTAITFIGVL-NACS-HAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIES 478 (689)
Q Consensus 402 ~~l~~~m~~~g~~p~~~t~~~ll-~a~~-~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~ 478 (689)
.-+-+...+. +..+..+...+. ..|. ....-++|.+++++.. .+.|+ ....+.+..++.+.|+.+++..++++
T Consensus 388 ~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 388 NALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 9887775542 233444554442 2232 3334578999998877 57787 56778889999999999999999998
Q ss_pred C-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc
Q 036237 479 M-PMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTI 519 (689)
Q Consensus 479 ~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 519 (689)
. ...||...-+.|...++..+.+++|...|..++.++|++-
T Consensus 464 ~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 464 HLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred HHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 5 5679999999999999999999999999999999999874
No 63
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=3.2e-07 Score=93.35 Aligned_cols=275 Identities=11% Similarity=-0.014 Sum_probs=210.2
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhcCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHH
Q 036237 249 NLVSWNAMINGYMKAGDVDSACELFDDMEIRD---LITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSA 325 (689)
Q Consensus 249 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 325 (689)
++.+.....+-+...+++.+..++++.+.+.| ...+..-|..+...|+..+-..+=.+|.+. .+-...+|-++..-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCY 321 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHH
Confidence 35566666777888899999999999887654 445666677888899888887777787764 34566788888888
Q ss_pred HHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC--CC-hhhHHHHHHHHHHcCCHHHHH
Q 036237 326 VAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK--KK-VGHWTAMIVGLGMHGMATQAL 402 (689)
Q Consensus 326 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~ 402 (689)
|...|...+|+..+......... -...|-.+...|+-.|.-|.|...+....+ ++ -..+--+..-|.+.++.+-|.
T Consensus 322 Yl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHH
Confidence 88899999999999887654321 245677788889999999999888876654 21 122333455688889999999
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc-CCC----CChhHHHHHHHHHHhcCCHHHHHHHH
Q 036237 403 DLFNKMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMINDY-GIE----PTIEHYGCLVDILCRTGYLEEAKSTI 476 (689)
Q Consensus 403 ~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~----p~~~~~~~li~~~~~~g~~~~A~~~~ 476 (689)
+.|.+... +.|+ +...+-+.-..-+.+.+.+|..+|+.....- .+. -...+++.|..+|.+.+++++|+..+
T Consensus 401 ~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 401 KFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 99999876 5665 5566666656667889999999998876211 111 13456899999999999999999999
Q ss_pred HhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHH
Q 036237 477 ESM-P-MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSN 527 (689)
Q Consensus 477 ~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~ 527 (689)
++. . .+.|..++.++.-.+...|+++.|+..|.+++.+.|++..+-..|..
T Consensus 479 q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 479 QKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKL 531 (611)
T ss_pred HHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 986 2 33478899999999999999999999999999999998655555543
No 64
>PRK12370 invasion protein regulator; Provisional
Probab=99.12 E-value=1.3e-08 Score=111.55 Aligned_cols=241 Identities=13% Similarity=0.005 Sum_probs=174.0
Q ss_pred ChHHHHHHHHHhccCCCCcChh-hHHHHHHHHH---------cccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcC
Q 036237 296 RFMEALELLETMLIGDVLPNDA-TLVSALSAVA---------GLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCG 365 (689)
Q Consensus 296 ~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~---------~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g 365 (689)
..++|+.+|++..+. .|+.. .+..+..++. ..+++++|...++.+++.. +.+...+..+...+...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 356888888888764 45433 3333333322 2244778888888888775 346777888888899999
Q ss_pred CHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHH
Q 036237 366 SIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI-TFIGVLNACSHAGLVNDGRRYFN 441 (689)
Q Consensus 366 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~ 441 (689)
++++|...|++..+ .+...|..+...|...|++++|+..+++..+ +.|+.. .+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 99999999998775 3456788899999999999999999999998 456543 33334445667899999999999
Q ss_pred HhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHhh---cC
Q 036237 442 MMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESMP-MRPNFV-IWMSLLSGARNHGNKDIGEYAANNLIK---VA 515 (689)
Q Consensus 442 ~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~ 515 (689)
++... ..|+ +..+..+...|...|++++|...+.++. ..|+.. .++.+...+...| +.|...++++++ ..
T Consensus 431 ~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 431 ELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 88742 2354 5567888899999999999999998863 445544 4555666667777 477777777766 33
Q ss_pred CCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 036237 516 PDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRG 549 (689)
Q Consensus 516 p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~ 549 (689)
|.++ ..+...|.-.|+-+.+..+ +++.+.|
T Consensus 507 ~~~~---~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 507 DNNP---GLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hcCc---hHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 4433 3367777888888877776 7777654
No 65
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.10 E-value=7.9e-07 Score=93.79 Aligned_cols=389 Identities=13% Similarity=0.062 Sum_probs=247.4
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCeehHHHHHHHHHhCCChHHHHHHHhhCCC----CCcchHHH
Q 036237 152 GFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD---KDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD----RDLFSWTC 224 (689)
Q Consensus 152 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~d~~~~~~ 224 (689)
.+.-|..+|..|.-+...+|+++.+.+.|++... .....|+.+-..|...|.-..|..+.+.-.. |+..+--.
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 3556788899998999999999999999988764 3456799999999999999999999887654 22233222
Q ss_pred HH-HHHH-hCCChHHHHHHHhhcCc--------CCcchHHHHHHHHHhcC-----------CHHHHHHHHHhcCCC---C
Q 036237 225 LV-DGFS-KCGKVEIAREIFYRMPN--------RNLVSWNAMINGYMKAG-----------DVDSACELFDDMEIR---D 280 (689)
Q Consensus 225 li-~~~~-~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g-----------~~~~A~~~~~~~~~~---~ 280 (689)
++ ..|. +.+.+++++.+-.++.. ..+..|-.+.-+|...- .-.++.+.+++..+. |
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 22 3333 45666776666555543 11444555555554321 234556666665432 3
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhh
Q 036237 281 LITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQM 360 (689)
Q Consensus 281 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 360 (689)
+..---+.--|+..++.+.|++..++.++.+-.-+...|..+.-.++..+++..|+.+.+.....--. |-.....-+..
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~-N~~l~~~~~~i 556 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD-NHVLMDGKIHI 556 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh-hhhhchhhhhh
Confidence 32222233346677888888888888888766667777777777777788888888887766542110 00000001111
Q ss_pred HHhcCCHHHHHHHHHhcCC-------------------------------CC-hhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 036237 361 YSKCGSIESALTVFRAISK-------------------------------KK-VGHWTAMIVGLGMHGMATQALDLFNKM 408 (689)
Q Consensus 361 ~~~~g~~~~A~~~~~~~~~-------------------------------~~-~~~~~~li~~~~~~g~~~~A~~l~~~m 408 (689)
-..-++.++|......+.. .+ +.++..+..- .+ -+...+..-.. |
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l-~a-~~~~~~~se~~-L 633 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL-VA-SQLKSAGSELK-L 633 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHH-HH-hhhhhcccccc-c
Confidence 1122333333222211110 01 1122221111 11 11111100000 2
Q ss_pred HHCCCCCCH--------HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 036237 409 CRMGMKPTA--------ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP-TIEHYGCLVDILCRTGYLEEAKSTIESM 479 (689)
Q Consensus 409 ~~~g~~p~~--------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 479 (689)
...-+.|.. ..|......+...+..++|...+.+.. ++.| ....|......+...|.++||.+.|...
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~A 710 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVA 710 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHH
Confidence 211122222 134455567888889999988887776 3444 4677888889999999999999998876
Q ss_pred -CCCCC-HHHHHHHHHHHHhcCChHHHHH--HHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 480 -PMRPN-FVIWMSLLSGARNHGNKDIGEY--AANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 480 -~~~p~-~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
.+.|+ +.+..++...+.+.|+...|.. ++..+++++|.++.++..|+.++.+.|+.++|.+-|....+
T Consensus 711 l~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 711 LALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 46675 4588999999999999999988 99999999999999999999999999999999999998764
No 66
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.07 E-value=1.3e-08 Score=102.11 Aligned_cols=189 Identities=13% Similarity=0.080 Sum_probs=120.4
Q ss_pred hHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 036237 352 VLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT-AITFIGVLNAC 427 (689)
Q Consensus 352 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~ 427 (689)
..+..+...|.+.|+.++|...|++..+ .+...|+.+...|...|++++|++.|++..+ +.|+ ..++..+..++
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 4455666677777788887777776654 3456788888888888888888888888776 4565 44666677777
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHH
Q 036237 428 SHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP--MRPNFVIWMSLLSGARNHGNKDIGE 505 (689)
Q Consensus 428 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~ 505 (689)
...|++++|.+.|+...+ ..|+..........+...+++++|.+.+.+.. ..|+. |.. .......|+...+
T Consensus 143 ~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~--~~~-~~~~~~lg~~~~~- 215 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQ--WGW-NIVEFYLGKISEE- 215 (296)
T ss_pred HHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccc--cHH-HHHHHHccCCCHH-
Confidence 778888888888887773 34543322222233445677888888875532 22332 221 1222334554433
Q ss_pred HHHHHHh-------hcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 036237 506 YAANNLI-------KVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRG 549 (689)
Q Consensus 506 ~~~~~~~-------~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~ 549 (689)
..++.+. ++.|+.+.+|..|+.+|.+.|++++|...|++..+.+
T Consensus 216 ~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 216 TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2333332 3455666788888888888888888888888777644
No 67
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.07 E-value=4.1e-08 Score=95.14 Aligned_cols=197 Identities=19% Similarity=0.152 Sum_probs=113.0
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhh
Q 036237 281 LITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQM 360 (689)
Q Consensus 281 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 360 (689)
...+..+...+...|++++|.+.+++..+.. |+ +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~----------------------------------~~~~~~~la~~ 74 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD--PD----------------------------------DYLAYLALALY 74 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cc----------------------------------cHHHHHHHHHH
Confidence 4556677777777777777777777765432 22 22233334444
Q ss_pred HHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHH
Q 036237 361 YSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKP-TAITFIGVLNACSHAGLVNDG 436 (689)
Q Consensus 361 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a 436 (689)
|...|++++|.+.|++... .+...+..+...+...|++++|++.|++.......| ....+..+...+...|++++|
T Consensus 75 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 154 (234)
T TIGR02521 75 YQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKA 154 (234)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHH
Confidence 5555555555555554432 233455555666666666666666666665532222 223444555566666777777
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 036237 437 RRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP-M-RPNFVIWMSLLSGARNHGNKDIGEYAANNLIKV 514 (689)
Q Consensus 437 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 514 (689)
...++..... .+.+...+..+...+...|++++|...+++.. . +.+...+..+...+...|+.+.|....+.+.+.
T Consensus 155 ~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 155 EKYLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 7777666631 12234556666677777777777777666541 1 234455555666666677777777766665544
Q ss_pred C
Q 036237 515 A 515 (689)
Q Consensus 515 ~ 515 (689)
.
T Consensus 233 ~ 233 (234)
T TIGR02521 233 F 233 (234)
T ss_pred C
Confidence 3
No 68
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.06 E-value=6.2e-09 Score=98.21 Aligned_cols=230 Identities=15% Similarity=0.120 Sum_probs=164.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhc
Q 036237 285 NSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKC 364 (689)
Q Consensus 285 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~ 364 (689)
+.|..+|.+.|.+.+|.+.|+..++. .|-..||..+-.+|-+...+..|..++..-++. ++.|+....-....+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 46677788888888888877777664 345556666667777777777777776665553 233444444455566666
Q ss_pred CCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 036237 365 GSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFN 441 (689)
Q Consensus 365 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 441 (689)
++.++|.++++...+ .++.+...+..+|.-.++++-|+..+++..+.|+. +...|+.+.-.|.-.+.+|-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 777777777776654 34555666667777778888888888888877743 45666777777777777777777666
Q ss_pred HhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchh
Q 036237 442 MMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGC 521 (689)
Q Consensus 442 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 521 (689)
+.... .-.|+ .-..+|..|.......||+..|.+.|+-++.-+|++..+
T Consensus 383 RAlst-at~~~------------------------------~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ea 431 (478)
T KOG1129|consen 383 RALST-ATQPG------------------------------QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEA 431 (478)
T ss_pred HHHhh-ccCcc------------------------------hhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHH
Confidence 66531 11111 123467777777778899999999999999999999999
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 036237 522 YVVLSNIYAAAGQWDKVSEVREMMKKRG 549 (689)
Q Consensus 522 ~~~L~~~~~~~g~~~~A~~~~~~m~~~~ 549 (689)
++.|+..-.+.|+.++|..++...++..
T Consensus 432 lnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 432 LNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 9999999999999999999999877643
No 69
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.06 E-value=3.5e-06 Score=87.03 Aligned_cols=452 Identities=14% Similarity=0.136 Sum_probs=271.3
Q ss_pred CCHHHHHHHHhcccCCCChhhHHHHHHHHHhCCCchHHHHHHHHhHhC-CCCCCcccHHHHHHHHHhcCChHHHHHHHHH
Q 036237 69 NNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDR-FLLPDNFTLPCVIKGAARLGAIKEGKQIHGL 147 (689)
Q Consensus 69 g~~~~A~~~f~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 147 (689)
..++.+.....+|| ..|-.-+..+.+.|+.......|.+.+.. -+.-....|...++.....+-++.+..++++
T Consensus 89 ~c~er~lv~mHkmp-----RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrR 163 (835)
T KOG2047|consen 89 NCFERCLVFMHKMP-----RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRR 163 (835)
T ss_pred HHHHHHHHHHhcCC-----HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHH
Confidence 34455666666676 57888888888888888888888887653 2333456788888888888888888888888
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCC----------CeehHHHHHHHHHhCCChH---HHHHHHhhC
Q 036237 148 VFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK----------DLVSWNCLIDGYVKKGEVE---VAMKLFDEM 214 (689)
Q Consensus 148 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----------~~~~~~~li~~~~~~g~~~---~A~~~~~~m 214 (689)
-++.. +..-+--|..+++.+++++|.+.+...... +-..|+.+-...+++-+.- ....+++.+
T Consensus 164 YLk~~----P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~g 239 (835)
T KOG2047|consen 164 YLKVA----PEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGG 239 (835)
T ss_pred HHhcC----HHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhh
Confidence 87653 334667778888888888888888877643 2334666655555553322 223344444
Q ss_pred CC--CCc--chHHHHHHHHHhCCChHHHHHHHhhcCc--CCcchHHHHHHHHHhcCCHHHHHHHH-H---hcCCCChHHH
Q 036237 215 PD--RDL--FSWTCLVDGFSKCGKVEIAREIFYRMPN--RNLVSWNAMINGYMKAGDVDSACELF-D---DMEIRDLITW 284 (689)
Q Consensus 215 ~~--~d~--~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~-~---~~~~~~~~~~ 284 (689)
.. +|. ..|++|.+-|.+.|.+++|..+|++... ..+.-++.+-+.|+.-..-.-+.++= . .-.+.+...+
T Consensus 240 i~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl 319 (835)
T KOG2047|consen 240 IRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDL 319 (835)
T ss_pred cccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhH
Confidence 43 232 3566666666666666666666666554 22334444445554332211111111 0 0001122222
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhccCC-----------CCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhC-----Cc
Q 036237 285 NSMIAGYELNGRFMEALELLETMLIGD-----------VLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNG-----FV 348 (689)
Q Consensus 285 ~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g-----~~ 348 (689)
.. .+.-|+.+...+ -+-+..++..-.. ...|+..+-...+.++++.= +.
T Consensus 320 ~~-------------~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~G 384 (835)
T KOG2047|consen 320 EL-------------HMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVG 384 (835)
T ss_pred HH-------------HHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCC
Confidence 22 222333332211 0112222322222 23455566666777776531 11
Q ss_pred cchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCC---h----hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----
Q 036237 349 VDGVLGTLLIQMYSKCGSIESALTVFRAISKKK---V----GHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT----- 416 (689)
Q Consensus 349 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----- 416 (689)
.-...|..+.+.|-..|+++.|+.+|++..+-+ + ..|-.-...=.++.+++.|+++.+......-.|.
T Consensus 385 s~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd 464 (835)
T KOG2047|consen 385 SPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYD 464 (835)
T ss_pred ChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhc
Confidence 124567788999999999999999999988632 2 3566666667788999999999888764322211
Q ss_pred ------H------HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-C-CC
Q 036237 417 ------A------ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-P-MR 482 (689)
Q Consensus 417 ------~------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~ 482 (689)
. ..|...+..-...|-++....+|+.++.-.-..|.+ .-...-.+.....++++.+++++- + ++
T Consensus 465 ~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqi--i~NyAmfLEeh~yfeesFk~YErgI~LFk 542 (835)
T KOG2047|consen 465 NSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQI--IINYAMFLEEHKYFEESFKAYERGISLFK 542 (835)
T ss_pred CCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHH--HHHHHHHHHhhHHHHHHHHHHHcCCccCC
Confidence 1 123334444445677888888888887321223332 222333455677799999999985 2 33
Q ss_pred -CCHH-HHHHHHHHHHhc---CChHHHHHHHHHHhhcCCCCc--hhHHHHHHHHHhcCCcchHHHHHHHHH
Q 036237 483 -PNFV-IWMSLLSGARNH---GNKDIGEYAANNLIKVAPDTI--GCYVVLSNIYAAAGQWDKVSEVREMMK 546 (689)
Q Consensus 483 -p~~~-~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~p~~~--~~~~~L~~~~~~~g~~~~A~~~~~~m~ 546 (689)
|++. .|++.+.-+.+. ..++.|..+|+++++.-|+.. ..|...+..=.+-|.-..|..++++..
T Consensus 543 ~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 543 WPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred CccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5554 888887766443 378999999999999777432 223333444445688888888888754
No 70
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.06 E-value=1.5e-08 Score=91.55 Aligned_cols=162 Identities=17% Similarity=0.151 Sum_probs=142.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHH
Q 036237 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI-TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVD 461 (689)
Q Consensus 384 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~ 461 (689)
+...|.-+|.+.|+...|..-+++.++ ..|+.. ++..+...|.+.|..+.|.+.|+... .+.|+ -.+.|....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhH
Confidence 355677889999999999999999998 467654 88888899999999999999999998 46676 688899999
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcch
Q 036237 462 ILCRTGYLEEAKSTIESMPMRPN----FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDK 537 (689)
Q Consensus 462 ~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~ 537 (689)
-+|..|++++|...|++.-..|+ ..+|..+..+..+.|+.+.|...+++.++.+|+.+.+...+.....+.|++-+
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 99999999999999999743342 45889999888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCC
Q 036237 538 VSEVREMMKKRGF 550 (689)
Q Consensus 538 A~~~~~~m~~~~~ 550 (689)
|..+++.....+.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9999998887654
No 71
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.06 E-value=2.3e-06 Score=82.00 Aligned_cols=187 Identities=13% Similarity=0.113 Sum_probs=95.4
Q ss_pred HHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCC-------HHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHh
Q 036237 357 LIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGM-------ATQALDLFNKMCRMGMKPTAI-TFIGVLNACS 428 (689)
Q Consensus 357 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~ 428 (689)
|+--|.+.+++.+|..+...+....+.-|-.-.-.++..|+ ..-|.+.|+-.-..+..-|.+ ---++.+++.
T Consensus 291 L~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fF 370 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFF 370 (557)
T ss_pred heeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHH
Confidence 45556777777777777766655444333222222333332 223444443333333333322 2223344444
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHH-HHhcCChHHHH
Q 036237 429 HAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMR--PNFVIWMSLLSG-ARNHGNKDIGE 505 (689)
Q Consensus 429 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--p~~~~~~~ll~~-~~~~g~~~~a~ 505 (689)
-...+|+.+.+++.+.. +=...|...+ .+..+++..|++.+|+++|-.+... .|..+|.+++.- |.+.+.++.|-
T Consensus 371 L~~qFddVl~YlnSi~s-YF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW 448 (557)
T KOG3785|consen 371 LSFQFDDVLTYLNSIES-YFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAW 448 (557)
T ss_pred HHHHHHHHHHHHHHHHH-HhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHH
Confidence 45566777777776662 3333333333 3667777777777777777665311 245556555444 34556666554
Q ss_pred HHHHHHhhcC-CCC-chhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 506 YAANNLIKVA-PDT-IGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 506 ~~~~~~~~~~-p~~-~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
.++ ++.+ |.+ ......+++-|.+.+.+--|.+.|+.+...
T Consensus 449 ~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 449 DMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred HHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 433 3322 211 223345566666777776666667666553
No 72
>PRK12370 invasion protein regulator; Provisional
Probab=99.04 E-value=3.1e-08 Score=108.63 Aligned_cols=210 Identities=10% Similarity=-0.025 Sum_probs=163.3
Q ss_pred cchhhHHHHHHHHHHhCCccchhHHhHHHhhHH---------hcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCC
Q 036237 330 AVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYS---------KCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGM 397 (689)
Q Consensus 330 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 397 (689)
+++++|...++.+++... .+...+..+..+|. ..+++++|...+++..+ .+...|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 456788899998887652 23455555555443 23458999999998876 356788889999999999
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCCHHHHHHH
Q 036237 398 ATQALDLFNKMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTI-EHYGCLVDILCRTGYLEEAKST 475 (689)
Q Consensus 398 ~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~ 475 (689)
+++|+..|++..+ ..|+ ...+..+..++...|++++|...++.+.+ +.|+. ..+..+...+...|++++|...
T Consensus 354 ~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 9999999999998 4566 44677788899999999999999999983 55653 2334455567778999999999
Q ss_pred HHhCC--CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 476 IESMP--MRPN-FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 476 ~~~~~--~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
+++.- ..|+ +..+..+..++...|+.++|...++++....|.+......|+..|...| ++|...++.+.+
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 98862 2354 4457778888889999999999999998888888878888888888888 488887777654
No 73
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=2.5e-06 Score=92.05 Aligned_cols=459 Identities=15% Similarity=0.137 Sum_probs=267.6
Q ss_pred HHHHhhcccccCCCCHHHHHHHHhcccC-CCChhh-----HHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHH
Q 036237 56 SSRLLSLYVDPHINNLHYARSIFDRILQ-HPSLVL-----YNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVI 129 (689)
Q Consensus 56 ~~~ll~~~~~~~~g~~~~A~~~f~~~~~-~~~~~~-----~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll 129 (689)
+...-+.+-+ .|-+..|++.+..+.. .+.++. -..++ .|.-.-.++.+++.++.|+..+++.|..+...+.
T Consensus 609 ra~IAqLCEK--AGL~qraLehytDl~DIKR~vVhth~L~pEwLv-~yFg~lsve~s~eclkaml~~NirqNlQi~VQva 685 (1666)
T KOG0985|consen 609 RAEIAQLCEK--AGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLV-NYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVA 685 (1666)
T ss_pred HHHHHHHHHh--cchHHHHHHhcccHHHHHHHHHHhccCCHHHHH-HHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4555566777 8888999988887763 222221 11222 3444456889999999999988888877766666
Q ss_pred HHHHhcCChHHHHHHHHHHHHh-----------CCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC-------------
Q 036237 130 KGAARLGAIKEGKQIHGLVFKL-----------GFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD------------- 185 (689)
Q Consensus 130 ~~~~~~~~~~~a~~~~~~~~~~-----------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------------- 185 (689)
.-|...-..+...++|+..... ++.-|+.+.-..|.+.++.|++.+.+++.++-.-
T Consensus 686 tky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeA 765 (1666)
T KOG0985|consen 686 TKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEA 765 (1666)
T ss_pred HHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhc
Confidence 6666554455555555544322 3456677777889999999999999988776430
Q ss_pred ------C------------CeehH------HHHHHHHHhCCC----------------hHHHH-----------------
Q 036237 186 ------K------------DLVSW------NCLIDGYVKKGE----------------VEVAM----------------- 208 (689)
Q Consensus 186 ------~------------~~~~~------~~li~~~~~~g~----------------~~~A~----------------- 208 (689)
| |.+.| --.|..|++.-+ .++.+
T Consensus 766 kL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv 845 (1666)
T KOG0985|consen 766 KLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELV 845 (1666)
T ss_pred cccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHH
Confidence 0 11111 112344444311 11110
Q ss_pred -------------HHHhhCCC---CCcchHHHHHHHHHhCCChHH-HH---------HHHhhcCcCC-------------
Q 036237 209 -------------KLFDEMPD---RDLFSWTCLVDGFSKCGKVEI-AR---------EIFYRMPNRN------------- 249 (689)
Q Consensus 209 -------------~~~~~m~~---~d~~~~~~li~~~~~~g~~~~-A~---------~~~~~~~~~~------------- 249 (689)
..++.... .|..++|+|...|..+++-.+ -+ .+=.-..++|
T Consensus 846 ~EvEkRNRLklLlp~LE~~i~eG~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqc 925 (1666)
T KOG0985|consen 846 EEVEKRNRLKLLLPWLESLIQEGSQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQC 925 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHHhccCcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCC
Confidence 01111110 255566666666554432211 00 0000000111
Q ss_pred ----------cchHHHHHHHHHhcCCHHHHHHHHHhcC-----------------CCChHHHHHHHHHHHHcCChHHHHH
Q 036237 250 ----------LVSWNAMINGYMKAGDVDSACELFDDME-----------------IRDLITWNSMIAGYELNGRFMEALE 302 (689)
Q Consensus 250 ----------~~~~~~li~~~~~~g~~~~A~~~~~~~~-----------------~~~~~~~~~li~~~~~~g~~~~A~~ 302 (689)
-..|..+.+.+.+..+.+--.+++.+-. ..|+..-+.-+.++...+-+.+-++
T Consensus 926 D~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIE 1005 (1666)
T KOG0985|consen 926 DLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIE 1005 (1666)
T ss_pred cHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHH
Confidence 2223333444444444444334432211 1245555566777888888888888
Q ss_pred HHHHhccCCCCcChhh----HHHHHHHHHcccchhhHHHHHHHHHHhC-----------------------CccchhHHh
Q 036237 303 LLETMLIGDVLPNDAT----LVSALSAVAGLAVLNKGRWMHSYIVKNG-----------------------FVVDGVLGT 355 (689)
Q Consensus 303 ~~~~m~~~g~~p~~~t----~~~ll~a~~~~~~~~~a~~i~~~~~~~g-----------------------~~~~~~~~~ 355 (689)
++++..-. |+.++ ...++-.-+-..+.....++...+-... +..+....+
T Consensus 1006 LLEKIvL~---~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~ 1082 (1666)
T KOG0985|consen 1006 LLEKIVLD---NSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQ 1082 (1666)
T ss_pred HHHHHhcC---CcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHH
Confidence 88877532 22221 1111111111112222222222221111 111222222
Q ss_pred HHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH
Q 036237 356 LLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVND 435 (689)
Q Consensus 356 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 435 (689)
.|++ .-++++.|.+.-++.. .+..|..+..+-.+.|...+|++-|-+. -|+..|..++.++++.|.+++
T Consensus 1083 VLie---~i~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~ed 1151 (1666)
T KOG0985|consen 1083 VLIE---NIGSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYED 1151 (1666)
T ss_pred HHHH---HhhhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHH
Confidence 2221 1233444444433333 3457999999999999999999877543 366789999999999999999
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 036237 436 GRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVA 515 (689)
Q Consensus 436 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 515 (689)
-.+++...+++ .-+|.+. +.||-+|++.+++.|-++++. -||..-...+.+-|...|.++.|.-+|.
T Consensus 1152 Lv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~------ 1218 (1666)
T KOG0985|consen 1152 LVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYS------ 1218 (1666)
T ss_pred HHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHH------
Confidence 99999888754 5566655 569999999999999888875 3788888889999999999999988887
Q ss_pred CCCchhHHHHHHHHHhcCCcchHHHHHHHHH
Q 036237 516 PDTIGCYVVLSNIYAAAGQWDKVSEVREMMK 546 (689)
Q Consensus 516 p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~ 546 (689)
+...|..|+..+...|.+..|...-++..
T Consensus 1219 --~vSN~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1219 --NVSNFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred --HhhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 44567778888888888887776554443
No 74
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=7.4e-07 Score=89.05 Aligned_cols=216 Identities=12% Similarity=0.035 Sum_probs=135.9
Q ss_pred HcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHH
Q 036237 293 LNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALT 372 (689)
Q Consensus 293 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 372 (689)
-.|+.-.|..-|+........++.. |.-+..+|....+.++..+.|..+.+.+ +.++.+|..-.+++.-.+++++|..
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHH
Confidence 3455556666666655543222221 4455555666666666666666666654 3345566666677777777888888
Q ss_pred HHHhcCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC
Q 036237 373 VFRAISKK---KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGI 449 (689)
Q Consensus 373 ~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 449 (689)
=|++...- ++..|-.+..+..+.++++++...|++.++. ++--...|+.....+...+++++|.+.|+..+ .+
T Consensus 416 DF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai---~L 491 (606)
T KOG0547|consen 416 DFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI---EL 491 (606)
T ss_pred HHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH---hh
Confidence 88777653 3445656666666677788888888887763 33334567777777778888888888887776 23
Q ss_pred CCC---------hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 036237 450 EPT---------IEHYGCLVDILCRTGYLEEAKSTIESM-PMRPN-FVIWMSLLSGARNHGNKDIGEYAANNLIKVA 515 (689)
Q Consensus 450 ~p~---------~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 515 (689)
.|+ +.+..+++-.- -.+++..|..++.+. .+.|. ...+.+|...-.+.|+.++|+.+|++...+.
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 343 11122222222 237788888888776 45553 4467778888888888888888888877654
No 75
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.01 E-value=3.9e-06 Score=87.58 Aligned_cols=239 Identities=15% Similarity=0.113 Sum_probs=150.7
Q ss_pred HHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCH
Q 036237 288 IAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSI 367 (689)
Q Consensus 288 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 367 (689)
|.+-.....|.+|+.+++.++... .-..-|..+...|+..|+++.|+++|... ..++-.|+||.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 344566788899999998887643 23345677788889999999998888543 2345578899999999
Q ss_pred HHHHHHHHhcCCCC--hhhHHHHHHHHHHcCCHHHHHHHH-------------HH------HHHC--CCCCC--HHHHHH
Q 036237 368 ESALTVFRAISKKK--VGHWTAMIVGLGMHGMATQALDLF-------------NK------MCRM--GMKPT--AITFIG 422 (689)
Q Consensus 368 ~~A~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~-------------~~------m~~~--g~~p~--~~t~~~ 422 (689)
++|.++-.+...|. +..|-+-..-+-.+|++.+|.++| ++ |.+. ...|+ ..|...
T Consensus 808 ~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~ 887 (1636)
T KOG3616|consen 808 EDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKH 887 (1636)
T ss_pred HHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHH
Confidence 99998888776653 344555555555566555555443 21 1110 01233 234555
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC----CCHHHHHH------HH
Q 036237 423 VLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMR----PNFVIWMS------LL 492 (689)
Q Consensus 423 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----p~~~~~~~------ll 492 (689)
+..-+...|++..|..-|-+.. -|.+-+.+|-..+.|++|.++-+.-+-. .-...|.- -+
T Consensus 888 f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaav 957 (1636)
T KOG3616|consen 888 FAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAV 957 (1636)
T ss_pred HHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHH
Confidence 5666667777777777665544 3667788899999999999888764311 11223322 22
Q ss_pred HHHHhcCChHHHHHHH------HHHhh-----cCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 493 SGARNHGNKDIGEYAA------NNLIK-----VAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 493 ~~~~~~g~~~~a~~~~------~~~~~-----~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
..+.++|-++.|+... +-+++ .....+.....++.-+...|++++|.+.+-+..+
T Consensus 958 kllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaik 1023 (1636)
T KOG3616|consen 958 KLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIK 1023 (1636)
T ss_pred HHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhh
Confidence 2345566666555432 22222 1223456788888889999999999777665544
No 76
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.97 E-value=3e-07 Score=92.25 Aligned_cols=225 Identities=10% Similarity=-0.041 Sum_probs=143.9
Q ss_pred ChHHHHHHHHHhccCC-CCcC--hhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHH
Q 036237 296 RFMEALELLETMLIGD-VLPN--DATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALT 372 (689)
Q Consensus 296 ~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 372 (689)
..+.++.-+.+++... ..|+ ...|......+...|+.++|...+..+++.. +.+...++.+...|...|++++|.+
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4445555555555321 1111 1234444445556666666666666666554 3356778888888999999999999
Q ss_pred HHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC
Q 036237 373 VFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGI 449 (689)
Q Consensus 373 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 449 (689)
.|++..+ .+...|..+...+...|++++|++.|++..+ ..|+..........+...++.++|...|+.... ..
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~~ 195 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYE--KL 195 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--hC
Confidence 9988765 3456788888899999999999999999887 456544222222234456789999999977653 33
Q ss_pred CCChhHHHHHHHHHHhcCCHH--HHHHHHHhC-CC----CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-Cch
Q 036237 450 EPTIEHYGCLVDILCRTGYLE--EAKSTIESM-PM----RP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPD-TIG 520 (689)
Q Consensus 450 ~p~~~~~~~li~~~~~~g~~~--~A~~~~~~~-~~----~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~-~~~ 520 (689)
.|+... ..++..+ .|++. ++.+.+.+. .. .| ....|..+...+.+.|++++|+..|+++++.+|. .+.
T Consensus 196 ~~~~~~-~~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e 272 (296)
T PRK11189 196 DKEQWG-WNIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVE 272 (296)
T ss_pred CccccH-HHHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHH
Confidence 444322 2333333 44443 333333321 11 12 2457999999999999999999999999999974 444
Q ss_pred hHHHHHHH
Q 036237 521 CYVVLSNI 528 (689)
Q Consensus 521 ~~~~L~~~ 528 (689)
.-..++..
T Consensus 273 ~~~~~~e~ 280 (296)
T PRK11189 273 HRYALLEL 280 (296)
T ss_pred HHHHHHHH
Confidence 44444443
No 77
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.95 E-value=1.1e-07 Score=99.67 Aligned_cols=232 Identities=16% Similarity=0.147 Sum_probs=157.1
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhcCCC----------ChH-HHHHHHHHHHHcCChHHHHHHHHHhccC---CCCcCh
Q 036237 251 VSWNAMINGYMKAGDVDSACELFDDMEIR----------DLI-TWNSMIAGYELNGRFMEALELLETMLIG---DVLPND 316 (689)
Q Consensus 251 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~ 316 (689)
.+...|..+|...|++++|+.+|+..... .+. ..+.+...|...+++.+|..+|++++.- ..-++.
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44555888888888888888888765422 111 2334556677777777777777776531 001111
Q ss_pred hhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC----------CChh-hH
Q 036237 317 ATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK----------KKVG-HW 385 (689)
Q Consensus 317 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------~~~~-~~ 385 (689)
+.-..+++.|...|.+.|++++|...+++..+ +.+. ..
T Consensus 280 -------------------------------~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l 328 (508)
T KOG1840|consen 280 -------------------------------PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQL 328 (508)
T ss_pred -------------------------------HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHH
Confidence 11133444455566666666666655554432 1222 35
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHhHHhc-----CCCCC-
Q 036237 386 TAMIVGLGMHGMATQALDLFNKMCRM---GMKPTA----ITFIGVLNACSHAGLVNDGRRYFNMMINDY-----GIEPT- 452 (689)
Q Consensus 386 ~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p~- 452 (689)
+.++..+...+++++|..++++..+. -..++. .+++.|...+.+.|++++|.++|++++... +..+.
T Consensus 329 ~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~ 408 (508)
T KOG1840|consen 329 SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGV 408 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhh
Confidence 66777788888899998888875542 123333 378899999999999999999999887543 12233
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHhh
Q 036237 453 IEHYGCLVDILCRTGYLEEAKSTIESM--------PMRPNFV-IWMSLLSGARNHGNKDIGEYAANNLIK 513 (689)
Q Consensus 453 ~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~ 513 (689)
-..++.|...|.+.++.++|.++|.+. +..|+.. +|..|...|...|+++.|+.+.+.++.
T Consensus 409 ~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 409 GKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 456788889999999999999988875 2345554 899999999999999999999988874
No 78
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.92 E-value=9.6e-07 Score=93.18 Aligned_cols=437 Identities=12% Similarity=0.077 Sum_probs=234.8
Q ss_pred CCCCCchHHHHHhhcccccCCCCHHHHHHHHhcccC--CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCccc-
Q 036237 48 NLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQ--HPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFT- 124 (689)
Q Consensus 48 g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t- 124 (689)
.+.-|+.+|..|.-+... +|+++.+-+.|++... -.....|+.+-..|+..|.-..|+.+.+.-......|+..+
T Consensus 318 ~~qnd~ai~d~Lt~al~~--~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSR--CGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred hhcchHHHHHHHHHHHHH--HHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 345688999999888888 9999999999998752 23344699999999999999999999887765543454443
Q ss_pred HHHHHHHHH-hcCChHHHHHHHHHHHHh--CC--CCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCeehHHHHHHHHH
Q 036237 125 LPCVIKGAA-RLGAIKEGKQIHGLVFKL--GF--GFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYV 199 (689)
Q Consensus 125 ~~~ll~~~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~ 199 (689)
+-..-+.|. +.+..+++..+-.++++. +. ......+..+.-+|...-. ...+|.-
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~--------------~a~~~se------ 455 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQAR--------------QANLKSE------ 455 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhh--------------cCCChHH------
Confidence 333334444 456777777777777662 11 1122333333333432100 0000000
Q ss_pred hCCChHHHHHHHhhCCCC---CcchHHHHHHHHHhCCChHHHHHHHhhcCc----CCcchHHHHHHHHHhcCCHHHHHHH
Q 036237 200 KKGEVEVAMKLFDEMPDR---DLFSWTCLVDGFSKCGKVEIAREIFYRMPN----RNLVSWNAMINGYMKAGDVDSACEL 272 (689)
Q Consensus 200 ~~g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~ 272 (689)
+.....++++.+++..+. |+...-.+.--|+..++++.|.+..++..+ .++..|..|.-.+...+++.+|+.+
T Consensus 456 R~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~v 535 (799)
T KOG4162|consen 456 RDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDV 535 (799)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHH
Confidence 001112333333333221 111111122223344445555444444333 2244444455555555555555555
Q ss_pred HHhcCCC---ChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHH--HhCC
Q 036237 273 FDDMEIR---DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIV--KNGF 347 (689)
Q Consensus 273 ~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~--~~g~ 347 (689)
.+..... |-+....-+..-..-++.++|+.....++.- --+...+. ..++-....+....+. ....
T Consensus 536 vd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~--we~~~~~q-------~~~~~g~~~~lk~~l~la~~q~ 606 (799)
T KOG4162|consen 536 VDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLAL--WEAEYGVQ-------QTLDEGKLLRLKAGLHLALSQP 606 (799)
T ss_pred HHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHH--HHhhhhHh-------hhhhhhhhhhhhcccccCcccc
Confidence 4443321 1111111112222244555555444444320 00000000 0000000000000000 0000
Q ss_pred ccchhHHhHHHhhHH---hcCCHHHHHHHHHhcCCCC------hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-H
Q 036237 348 VVDGVLGTLLIQMYS---KCGSIESALTVFRAISKKK------VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT-A 417 (689)
Q Consensus 348 ~~~~~~~~~li~~~~---~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~ 417 (689)
.....++..+..... +.-..+.....+...+.++ ...|......+.+.++.++|...+.+... +.|- .
T Consensus 607 ~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~ 684 (799)
T KOG4162|consen 607 TDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSA 684 (799)
T ss_pred cccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhH
Confidence 001111111111111 1111111112222222222 23577777888899999999888887765 3444 3
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHH--HHHhC-CCCC-CHHHHHHHH
Q 036237 418 ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKS--TIESM-PMRP-NFVIWMSLL 492 (689)
Q Consensus 418 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~ll 492 (689)
..|......+...|..++|.+.|.... .+.|+ +....++..++.+.|+..-|.. ++..+ .+.| +...|..|.
T Consensus 685 ~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG 761 (799)
T KOG4162|consen 685 SVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLG 761 (799)
T ss_pred HHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 355555566778899999999998887 57787 6788999999999998666666 77766 4555 678999999
Q ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCch
Q 036237 493 SGARNHGNKDIGEYAANNLIKVAPDTIG 520 (689)
Q Consensus 493 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 520 (689)
..+.+.|+.+.|...|..++++++.+|.
T Consensus 762 ~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 762 EVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 9999999999999999999999887763
No 79
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.91 E-value=1.7e-06 Score=82.88 Aligned_cols=370 Identities=13% Similarity=0.078 Sum_probs=208.2
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC---CCeehHHHHHHHHHhCCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHH
Q 036237 163 LVSMYAKFGEIDLGRRVFDAMDD---KDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAR 239 (689)
Q Consensus 163 li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~ 239 (689)
+...|.+.|++++|..++.-+.+ ++...|-.|.-.+.-.|.+.+|..+-....+ ++..-..|....-+.++-++-.
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~ 141 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRIL 141 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHH
Confidence 33445555666666665554432 2344455555555555666666555544332 1112223333344555555555
Q ss_pred HHHhhcCcCCcchHHHHHHHHHhcCCHHHHHHHHHhcCCC--ChHHHHH-HHHHHHHcCChHHHHHHHHHhccCCCCcCh
Q 036237 240 EIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIR--DLITWNS-MIAGYELNGRFMEALELLETMLIGDVLPND 316 (689)
Q Consensus 240 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 316 (689)
.+.+.+... ..-.-+|..+.-..-.+.+|++++.++... +-...|. |.-+|.+..-++-+.+++.--++. -||+
T Consensus 142 ~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS 218 (557)
T KOG3785|consen 142 TFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS 218 (557)
T ss_pred HHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc
Confidence 555444332 122334444444455677888888877643 3334443 334566777777777777666553 2333
Q ss_pred hhHHHHHHHH--HcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhc-----CCHHHHHHHHHhcCCCChhhHHHHH
Q 036237 317 ATLVSALSAV--AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKC-----GSIESALTVFRAISKKKVGHWTAMI 389 (689)
Q Consensus 317 ~t~~~ll~a~--~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~li 389 (689)
|+..=+.+| .+.=+-..+++-...+.+.+-..-+ .+.-.++. .+-+.|.+++-.+.+-=+..--.|+
T Consensus 219 -tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~-----f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~ 292 (557)
T KOG3785|consen 219 -TIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYP-----FIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLI 292 (557)
T ss_pred -HHHHHHHHHHHhhhhccchhHHHHHHHHhcccccch-----hHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhhe
Confidence 232223333 2222222333333333332211111 11111221 2335677776655543344445566
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHH
Q 036237 390 VGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNA-----CSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDIL 463 (689)
Q Consensus 390 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-----~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~ 463 (689)
--|.++++..+|..+.+++.- ..|-......+..+ ......+.-|.+.|+..- ..+..-| +.--.++...+
T Consensus 293 iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG-~Sa~ecDTIpGRQsmAs~f 369 (557)
T KOG3785|consen 293 IYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVG-ESALECDTIPGRQSMASYF 369 (557)
T ss_pred eeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhc-ccccccccccchHHHHHHH
Confidence 678999999999999887643 44544444433322 222234566777777655 3344433 44556777777
Q ss_pred HhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhH-HHHHHHHHhcCCcchHHH
Q 036237 464 CRTGYLEEAKSTIESMP--MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCY-VVLSNIYAAAGQWDKVSE 540 (689)
Q Consensus 464 ~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~-~~L~~~~~~~g~~~~A~~ 540 (689)
.-..++++.+..+..+. +..|...--.+..+.+..|++.+|+++|-++-..+-.|...| ..|+.+|.+.|+.+-|..
T Consensus 370 FL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~ 449 (557)
T KOG3785|consen 370 FLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWD 449 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHH
Confidence 77788999998888874 333444445688899999999999999988877663343444 578899999999999987
Q ss_pred HHHHH
Q 036237 541 VREMM 545 (689)
Q Consensus 541 ~~~~m 545 (689)
++-++
T Consensus 450 ~~lk~ 454 (557)
T KOG3785|consen 450 MMLKT 454 (557)
T ss_pred HHHhc
Confidence 76544
No 80
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.91 E-value=1.5e-06 Score=93.83 Aligned_cols=504 Identities=13% Similarity=0.011 Sum_probs=269.0
Q ss_pred hHHHHHHHHHHHhCCCCC-chHHHHHhhcccccCCCCHHHHHHHHhcccC--CCChhhHHHHHHHHHhCCCchHHHHHHH
Q 036237 35 KETQQLHALSVKTNLIYH-SGISSRLLSLYVDPHINNLHYARSIFDRILQ--HPSLVLYNLLIKCYVFNQRSHEALTLFC 111 (689)
Q Consensus 35 ~~~~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 111 (689)
.....+|..+....+.++ ...|..|-..|+. ..+...|...|+...+ ..++.+|-.....|++..+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd--~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYRD--SDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 345556666655555554 4678888888888 6688899999988764 5667788999999999999999999833
Q ss_pred HhHhCCCC-CCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCeeh
Q 036237 112 DLLDRFLL-PDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVS 190 (689)
Q Consensus 112 ~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 190 (689)
..-+.... .-...|...--.+...++...+..-|....+.. +.|...|..|..+|.++|++..|.++|++...-++.+
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s 629 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS 629 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh
Confidence 32221100 011122222223445677777877777777665 5678899999999999999999999998877655544
Q ss_pred HHHH---HHHHHhCCChHHHHHHHhhCCCC----------CcchHHHHHHHHHhCCChHHHHHHHhhcCc----------
Q 036237 191 WNCL---IDGYVKKGEVEVAMKLFDEMPDR----------DLFSWTCLVDGFSKCGKVEIAREIFYRMPN---------- 247 (689)
Q Consensus 191 ~~~l---i~~~~~~g~~~~A~~~~~~m~~~----------d~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------- 247 (689)
|-.- ....+..|.+.+|+..+...... -..++--+...+...|-..+|..+++..++
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~ 709 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSL 709 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Confidence 4322 22345568888888877766430 112222222223333333333333332221
Q ss_pred -CCc-------------------chHHHHHHHHHh----cCCH---H---HHHHHHHhcC--CCChHHHHHHHHHHHH--
Q 036237 248 -RNL-------------------VSWNAMINGYMK----AGDV---D---SACELFDDME--IRDLITWNSMIAGYEL-- 293 (689)
Q Consensus 248 -~~~-------------------~~~~~li~~~~~----~g~~---~---~A~~~~~~~~--~~~~~~~~~li~~~~~-- 293 (689)
.+. .+-..++..+.+ .+.. | -+.+.+-.-. ..+..+|..++..|.+
T Consensus 710 ~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f 789 (1238)
T KOG1127|consen 710 QSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYF 789 (1238)
T ss_pred hhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHH
Confidence 011 111111111111 1111 0 0000000000 0134456656555443
Q ss_pred --cC----ChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCC-ccchhHHhHHHhhHHhcCC
Q 036237 294 --NG----RFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGF-VVDGVLGTLLIQMYSKCGS 366 (689)
Q Consensus 294 --~g----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~-~~~~~~~~~li~~~~~~g~ 366 (689)
.| +...|+..+.+..+. ..+...+-..+...+..|++.-+ .|..+...-. +....+|..+.-.+.+..+
T Consensus 790 ~~l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVlsg~gnva~a--QHCfIks~~sep~~~~~W~NlgvL~l~n~d 865 (1238)
T KOG1127|consen 790 LLLGETMKDACTAIRCCKKAVSL--CANNEGLWNALGVLSGIGNVACA--QHCFIKSRFSEPTCHCQWLNLGVLVLENQD 865 (1238)
T ss_pred HHcCCcchhHHHHHHHHHHHHHH--hhccHHHHHHHHHhhccchhhhh--hhhhhhhhhccccchhheeccceeEEeccc
Confidence 11 223566777766543 23333333344444444444333 3333333222 3345566666666667777
Q ss_pred HHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHH------------------------------------
Q 036237 367 IESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNK------------------------------------ 407 (689)
Q Consensus 367 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~------------------------------------ 407 (689)
++-|...|..... .|...|--........|+.-++..+|..
T Consensus 866 ~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t 945 (1238)
T KOG1127|consen 866 FEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINT 945 (1238)
T ss_pred HHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHH
Confidence 7777777766554 2333443333333333333333333332
Q ss_pred ---HHHC---------CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHH----HHHHHHHhcCCHHH
Q 036237 408 ---MCRM---------GMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYG----CLVDILCRTGYLEE 471 (689)
Q Consensus 408 ---m~~~---------g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~----~li~~~~~~g~~~~ 471 (689)
.... |.+-+...|........+.+...+|.....+.+.-...+-+...|+ .+...+...|.++.
T Consensus 946 ~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~ 1025 (1238)
T KOG1127|consen 946 ARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFES 1025 (1238)
T ss_pred hhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhh
Confidence 1110 1222234555555555666666666665555442111223334444 33445566677777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc---hhHHHHHHHHHhcCCcchHHHHHHHHH
Q 036237 472 AKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTI---GCYVVLSNIYAAAGQWDKVSEVREMMK 546 (689)
Q Consensus 472 A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~L~~~~~~~g~~~~A~~~~~~m~ 546 (689)
|..-+...+...|..+-.+-+.. .-.|+++.+...|++++.+.-++. .....++......+.-+.|...+=+..
T Consensus 1026 A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~ 1102 (1238)
T KOG1127|consen 1026 AKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVK 1102 (1238)
T ss_pred HhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHH
Confidence 76666655444444444333333 445789999999999988543332 334455556667777788877654444
No 81
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.91 E-value=1.4e-05 Score=82.90 Aligned_cols=179 Identities=13% Similarity=0.067 Sum_probs=84.0
Q ss_pred HhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHH
Q 036237 98 VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGR 177 (689)
Q Consensus 98 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 177 (689)
...|+.++|.+..+.-.+..+ -+.+.|..+--.+....++++|...+..+.+.+ +.|...+.-|.-.=++.|+++...
T Consensus 52 ~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~ 129 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYL 129 (700)
T ss_pred hcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHH
Confidence 344556666665555444321 234445554444445555666666666666554 344445544444444445554444
Q ss_pred HHHhhCCC---CCeehHHHHHHHHHhCCChHHHHHHHhhCCC-----CCcchHHHHH------HHHHhCCChHHHHHHHh
Q 036237 178 RVFDAMDD---KDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD-----RDLFSWTCLV------DGFSKCGKVEIAREIFY 243 (689)
Q Consensus 178 ~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~d~~~~~~li------~~~~~~g~~~~A~~~~~ 243 (689)
..-....+ ..-..|..+..++--.|....|..+.+...+ ++...|.-.. ......|..++|.+.+.
T Consensus 130 ~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~ 209 (700)
T KOG1156|consen 130 ETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLL 209 (700)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 43333322 2334566666666666666666665555432 2222222111 12334455555555444
Q ss_pred hcCc---CCcchHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 036237 244 RMPN---RNLVSWNAMINGYMKAGDVDSACELFDDMEI 278 (689)
Q Consensus 244 ~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 278 (689)
.-.. .....--.-.+.+.+.+++++|..++..+..
T Consensus 210 ~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~ 247 (700)
T KOG1156|consen 210 DNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLE 247 (700)
T ss_pred hhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh
Confidence 3322 1112222333445555555555555555543
No 82
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=1.9e-05 Score=81.12 Aligned_cols=128 Identities=11% Similarity=0.007 Sum_probs=84.3
Q ss_pred HHHHHHHHHhc--cCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHH--------hCC-CCCCHH
Q 036237 419 TFIGVLNACSH--AGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIE--------SMP-MRPNFV 486 (689)
Q Consensus 419 t~~~ll~a~~~--~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~--------~~~-~~p~~~ 486 (689)
.+..++..+.. ......+..++..... +.+-. ..+.-.++......|+++.|.+++. ..+ +.-.+.
T Consensus 341 ~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~ 418 (652)
T KOG2376|consen 341 LFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG 418 (652)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh
Confidence 44455544432 2246677777776653 22222 4566678888999999999999998 432 333455
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhh----cCCCC---chhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 487 IWMSLLSGARNHGNKDIGEYAANNLIK----VAPDT---IGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 487 ~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~p~~---~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
+..++...+.+.++.+.|..++..++. -.+.. ...+..++..-.+.|+-++|..+++++.+.
T Consensus 419 ~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~ 487 (652)
T KOG2376|consen 419 TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF 487 (652)
T ss_pred HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh
Confidence 666777777888888888888887766 12222 223334445556789999999999998763
No 83
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.87 E-value=6.4e-06 Score=87.17 Aligned_cols=397 Identities=14% Similarity=0.145 Sum_probs=254.5
Q ss_pred CCchHHHHHhh--cccccCCCCHHHHHHHHhcccCCCChhhHHHHHHHHHhCCCchHHHHHHHHhHhC-C--------CC
Q 036237 51 YHSGISSRLLS--LYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDR-F--------LL 119 (689)
Q Consensus 51 ~~~~~~~~ll~--~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g--------~~ 119 (689)
-|..+-.++++ .|.. -|+.+.|.+-..-+. +-..|..|.+.+++..+++-|.-.+..|... | -.
T Consensus 724 Cd~~TRkaml~FSfyvt--iG~MD~AfksI~~Ik---S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVT--IGSMDAAFKSIQFIK---SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred cCHHHHHhhhceeEEEE--eccHHHHHHHHHHHh---hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 35666666664 6777 899999998877765 4567999999999999999888887776531 1 12
Q ss_pred CCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCC-CeehHHHHHHHH
Q 036237 120 PDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDK-DLVSWNCLIDGY 198 (689)
Q Consensus 120 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~li~~~ 198 (689)
|+ .+=..+.-.....|.+++|+.++.+..+.. .|=..|-..|.+++|.++-+.-..- =-.||..-..-+
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~L 868 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYL 868 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHH
Confidence 32 222222223347899999999999887643 3445677889999999987643221 123555566666
Q ss_pred HhCCChHHHHHHHhhCCC-----------------------CCcchHHHHHHHHHhCCChHHHHHHHhhcCcCCcchHHH
Q 036237 199 VKKGEVEVAMKLFDEMPD-----------------------RDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNA 255 (689)
Q Consensus 199 ~~~g~~~~A~~~~~~m~~-----------------------~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 255 (689)
-..++.+.|++.|++... +|...|.-...-+-..|+.+.|+.+|..+. -|-+
T Consensus 869 ear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-----D~fs 943 (1416)
T KOG3617|consen 869 EARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK-----DYFS 943 (1416)
T ss_pred HhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-----hhhh
Confidence 667888888888877643 133344444444556788888888887753 4677
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccc----
Q 036237 256 MINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAV---- 331 (689)
Q Consensus 256 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~---- 331 (689)
++...+-.|+.++|-++-++- .|......+...|-..|++.+|..+|.+.+ +|...|+.|-..+.
T Consensus 944 ~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d~L 1012 (1416)
T KOG3617|consen 944 MVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKDRL 1012 (1416)
T ss_pred heeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHHH
Confidence 777788888999888887763 366777788999999999999999998875 34444544432221
Q ss_pred -----------hhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC--------------CChhhHH
Q 036237 332 -----------LNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK--------------KKVGHWT 386 (689)
Q Consensus 332 -----------~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------------~~~~~~~ 386 (689)
.-.|-.+|+ +.|.. ....+..|-|.|.+.+|+++--+-.+ .|+...+
T Consensus 1013 ~nlal~s~~~d~v~aArYyE---e~g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~ 1084 (1416)
T KOG3617|consen 1013 ANLALMSGGSDLVSAARYYE---ELGGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLR 1084 (1416)
T ss_pred HHHHhhcCchhHHHHHHHHH---Hcchh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHH
Confidence 112222222 22211 12244567788888777765322221 2455566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHH
Q 036237 387 AMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT----IEHYGCLVDI 462 (689)
Q Consensus 387 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~ 462 (689)
--...|..+.++++|..++-...+ |...+..|.. .++.-..++-+.|.....-.|+ ......+.+.
T Consensus 1085 RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~-~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~ 1154 (1416)
T KOG3617|consen 1085 RCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKN-RNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAEL 1154 (1416)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhc-CCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHH
Confidence 666677788888888888766554 3334444433 3334444444444322222333 2456677788
Q ss_pred HHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 036237 463 LCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKD 502 (689)
Q Consensus 463 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~ 502 (689)
+.+.|.+..|-+-|-+++.+ ..-+.++.+.||.+
T Consensus 1155 c~qQG~Yh~AtKKfTQAGdK------l~AMraLLKSGdt~ 1188 (1416)
T KOG3617|consen 1155 CLQQGAYHAATKKFTQAGDK------LSAMRALLKSGDTQ 1188 (1416)
T ss_pred HHhccchHHHHHHHhhhhhH------HHHHHHHHhcCCcc
Confidence 88999999988888887633 22345566777765
No 84
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.85 E-value=8e-08 Score=98.09 Aligned_cols=218 Identities=13% Similarity=0.100 Sum_probs=170.2
Q ss_pred HcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHH
Q 036237 327 AGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALD 403 (689)
Q Consensus 327 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 403 (689)
.+.|++.+|.-.|+..++.. +.+...|.-|.......++-..|+..+++..+ .+....-+|.-.|...|.-.+|++
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 45666777777777777665 44677777788888888888888888888776 356677778888999999999999
Q ss_pred HHHHHHHCCCC--------CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 036237 404 LFNKMCRMGMK--------PTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKST 475 (689)
Q Consensus 404 l~~~m~~~g~~--------p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 475 (689)
.|+..+....+ ++..+-.. ..+.+...+....++|-.+....+..+|+.++.+|.-+|--.|.+++|.+.
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 99988653210 01100000 122333345566677777766667678899999999999999999999999
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 476 IESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 476 ~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
|+.+ .++| |..+||-|...++...+.++|+..|.+++++.|.-+.+.+.|+..|...|.+++|.+.|=....
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9986 5677 6779999999999999999999999999999999999999999999999999999998877653
No 85
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.84 E-value=1.9e-07 Score=88.37 Aligned_cols=222 Identities=14% Similarity=0.094 Sum_probs=170.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC--CChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHH-HHHHHHHccc
Q 036237 254 NAMINGYMKAGDVDSACELFDDMEI--RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLV-SALSAVAGLA 330 (689)
Q Consensus 254 ~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a~~~~~ 330 (689)
+.+...|.+.|-+.+|++.|+...+ +-+.+|-.|-..|.+..+++.|+.+|.+-++ ..|-.+||. ...+.+...+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhhhhHHHHHHHH
Confidence 4677888888888888888887653 4677888888888888889999888888765 356666664 4556677778
Q ss_pred chhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 036237 331 VLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNK 407 (689)
Q Consensus 331 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~ 407 (689)
+.+.+.++++.+.+.. +.++....++...|.-.++.+.|...++++.+ .++..|+.+.-+|.-.++++-++.-|.+
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 8888888888888765 34556666677778888999999999988765 5777899998889999999999999999
Q ss_pred HHHCCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 036237 408 MCRMGMKPTAI--TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP 480 (689)
Q Consensus 408 m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 480 (689)
....--.|+.. .|-.+.......|++.-|.+.|+.... .-....+.+|.|.-+-.+.|++++|..++....
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 88765556643 466666666778899999998888773 222335777888777788888888888887663
No 86
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.83 E-value=0.00013 Score=86.14 Aligned_cols=261 Identities=15% Similarity=0.006 Sum_probs=152.4
Q ss_pred HHHHHcCChHHHHHHHHHhccCCCCcCh----hhHHHHHHHHHcccchhhHHHHHHHHHHh----CC-ccchhHHhHHHh
Q 036237 289 AGYELNGRFMEALELLETMLIGDVLPND----ATLVSALSAVAGLAVLNKGRWMHSYIVKN----GF-VVDGVLGTLLIQ 359 (689)
Q Consensus 289 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----g~-~~~~~~~~~li~ 359 (689)
..+...|++++|...+++....-...+. ...+.+...+...|+++.|...+...... |. .........+..
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 3345667777777777766542111111 12233333455667777777766665542 11 111233445566
Q ss_pred hHHhcCCHHHHHHHHHhcCC-------CC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCC--HHHHHHHH
Q 036237 360 MYSKCGSIESALTVFRAISK-------KK----VGHWTAMIVGLGMHGMATQALDLFNKMCRMG--MKPT--AITFIGVL 424 (689)
Q Consensus 360 ~~~~~g~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~--~~t~~~ll 424 (689)
.+...|++++|...+++... ++ ...+..+...+...|++++|...+++..... ..|. ...+..+.
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence 67777888888777765432 11 1234445556667788888888888765421 1122 22344455
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCChhHH-----HHHHHHHHhcCCHHHHHHHHHhCCCC--CCH----HHHHHHHH
Q 036237 425 NACSHAGLVNDGRRYFNMMINDYGIEPTIEHY-----GCLVDILCRTGYLEEAKSTIESMPMR--PNF----VIWMSLLS 493 (689)
Q Consensus 425 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~--p~~----~~~~~ll~ 493 (689)
......|+.++|...++....-.........+ ......+...|+.+.|...+...... ... ..+..+..
T Consensus 620 ~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~ 699 (903)
T PRK04841 620 KISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIAR 699 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHH
Confidence 56677888888888887775321111111111 11224455678888888888765311 111 12345666
Q ss_pred HHHhcCChHHHHHHHHHHhhcC------CCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 036237 494 GARNHGNKDIGEYAANNLIKVA------PDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRG 549 (689)
Q Consensus 494 ~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~ 549 (689)
++...|+.++|...++++++.. +....++..++.+|.+.|+.++|...+.+..+..
T Consensus 700 ~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 700 AQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 6778889999988888887632 1223467778888889999999998888887543
No 87
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.81 E-value=1.3e-06 Score=79.22 Aligned_cols=190 Identities=12% Similarity=0.067 Sum_probs=125.1
Q ss_pred HHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHH
Q 036237 326 VAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQAL 402 (689)
Q Consensus 326 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 402 (689)
|...|+...|+.-++.+++.. +.+..++..+...|.+.|..+.|.+.|++..+ .+....|.....+|.+|++++|.
T Consensus 45 YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~ 123 (250)
T COG3063 45 YLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAM 123 (250)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHH
Confidence 333333333333333333332 22344555666667777777777777776553 34556777777778888888888
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 036237 403 DLFNKMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESMP 480 (689)
Q Consensus 403 ~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~ 480 (689)
..|++......-|. ..||..+.-+..+.|+.+.|..+|++..+ ..|+ ......+.+...+.|++..|..+++...
T Consensus 124 q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~ 200 (250)
T COG3063 124 QQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAGDYAPARLYLERYQ 200 (250)
T ss_pred HHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 88888776433333 34777777777788888888888887773 3444 5666777788888888888888887762
Q ss_pred --CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc
Q 036237 481 --MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTI 519 (689)
Q Consensus 481 --~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 519 (689)
..++..+....+..-...||.+.+.+.-..+....|...
T Consensus 201 ~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 201 QRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred hcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 336666666666666777888877777777777777654
No 88
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=9.2e-06 Score=79.70 Aligned_cols=256 Identities=11% Similarity=0.037 Sum_probs=118.7
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCeehHHHH---HHHHHhCCChHHHHHHHhhCCCCC---cchHHHHH
Q 036237 153 FGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCL---IDGYVKKGEVEVAMKLFDEMPDRD---LFSWTCLV 226 (689)
Q Consensus 153 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~d---~~~~~~li 226 (689)
++.|+.....+...|...|+.++|...|+....-|+.+...| .-.+.+.|+.+....+...+...+ ...|-.-+
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~ 307 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHA 307 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhh
Confidence 455566666666666677777777777766554443332222 122345566665555554443322 22233333
Q ss_pred HHHHhCCChHHHHHHHhhcCcCC---cchHHHHHHHHHhcCCHHHHHHHHHhcC--CC-ChHHHHHHHHHHHHcCChHHH
Q 036237 227 DGFSKCGKVEIAREIFYRMPNRN---LVSWNAMINGYMKAGDVDSACELFDDME--IR-DLITWNSMIAGYELNGRFMEA 300 (689)
Q Consensus 227 ~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A 300 (689)
.......+++.|+.+-++.++.+ ...+-.-.+.+...|+.++|.-.|+... .| +..+|.-|+..|...|++.+|
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA 387 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEA 387 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHH
Confidence 33344555666666666655533 2223333345556666666666666543 22 556666666666666666666
Q ss_pred HHHHHHhccCCCCcChhhHHHHH-HHHH-cccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcC
Q 036237 301 LELLETMLIGDVLPNDATLVSAL-SAVA-GLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS 378 (689)
Q Consensus 301 ~~~~~~m~~~g~~p~~~t~~~ll-~a~~-~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 378 (689)
.-+-+...+. ++.+..+...+. ..|. ....-++|+.+++...+.... -....+.+.+.+...|..++++.++++..
T Consensus 388 ~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~-Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L 465 (564)
T KOG1174|consen 388 NALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI-YTPAVNLIAELCQVEGPTKDIIKLLEKHL 465 (564)
T ss_pred HHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc-cHHHHHHHHHHHHhhCccchHHHHHHHHH
Confidence 6554443321 112222222221 1111 111223444444443332211 12222334444444444444444444433
Q ss_pred C--CChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036237 379 K--KKVGHWTAMIVGLGMHGMATQALDLFNKMCR 410 (689)
Q Consensus 379 ~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 410 (689)
. +|....+.|...+...+.+.+|++.|.....
T Consensus 466 ~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 466 IIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred hhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 2 3444444444444444444444444444433
No 89
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.78 E-value=2.4e-07 Score=91.63 Aligned_cols=81 Identities=11% Similarity=0.057 Sum_probs=50.9
Q ss_pred CCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCc-chHHHHHH
Q 036237 467 GYLEEAKSTIESMP--MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQW-DKVSEVRE 543 (689)
Q Consensus 467 g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~-~~A~~~~~ 543 (689)
+.+.+|..+|+++. ..+++.+.+.+..+....|++++|+.+++++++.+|+++.+...++-+....|+. +.+.+++.
T Consensus 181 e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 34666666666652 2356666666666777777777777777777777777777777777777777776 44556666
Q ss_pred HHHh
Q 036237 544 MMKK 547 (689)
Q Consensus 544 ~m~~ 547 (689)
+++.
T Consensus 261 qL~~ 264 (290)
T PF04733_consen 261 QLKQ 264 (290)
T ss_dssp HCHH
T ss_pred HHHH
Confidence 6654
No 90
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.77 E-value=5.4e-06 Score=88.16 Aligned_cols=124 Identities=16% Similarity=0.146 Sum_probs=76.9
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHH
Q 036237 420 FIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESMP-MR-PNFVIWMSLLSGAR 496 (689)
Q Consensus 420 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~ll~~~~ 496 (689)
+..+...|.+.|++++|+++.+..+. ..|+ +..|..-...|-+.|++++|.+.++... .. .|..+=+-....+.
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence 34444556667777777777777762 3455 5667777777777777777777776653 22 24444444555566
Q ss_pred hcCChHHHHHHHHHHhhcC--CCC-------chhHHHHHHHHHhcCCcchHHHHHHHHH
Q 036237 497 NHGNKDIGEYAANNLIKVA--PDT-------IGCYVVLSNIYAAAGQWDKVSEVREMMK 546 (689)
Q Consensus 497 ~~g~~~~a~~~~~~~~~~~--p~~-------~~~~~~L~~~~~~~g~~~~A~~~~~~m~ 546 (689)
+.|++++|+..+......+ |.. .......+.+|.+.|++..|...+..+.
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 7777777777766655433 211 1223456777888888888877666554
No 91
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.72 E-value=1.8e-05 Score=75.85 Aligned_cols=307 Identities=13% Similarity=0.091 Sum_probs=195.4
Q ss_pred HHHHHHHHhCCChHHHHHHHhhCCCCCcchHHHHHH---HHHhCCChHHHHHHHhhcCcCCcchHHHHH---HHHHhcCC
Q 036237 192 NCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVD---GFSKCGKVEIAREIFYRMPNRNLVSWNAMI---NGYMKAGD 265 (689)
Q Consensus 192 ~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~---~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~ 265 (689)
-.+-+.+...|++.+|+.-|....+-|+..|.++.. .|...|+...|+.-+.++++..+..+.+-+ ..+.|.|.
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhccc
Confidence 356777788888999999998888877777777654 577778877777777777654444443333 45678888
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHh
Q 036237 266 VDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKN 345 (689)
Q Consensus 266 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 345 (689)
++.|..=|+.+...++. -+....++.+.-..++-.. ....+..+...|+...++.....+++.
T Consensus 122 le~A~~DF~~vl~~~~s-~~~~~eaqskl~~~~e~~~----------------l~~ql~s~~~~GD~~~ai~~i~~llEi 184 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPS-NGLVLEAQSKLALIQEHWV----------------LVQQLKSASGSGDCQNAIEMITHLLEI 184 (504)
T ss_pred HHHHHHHHHHHHhcCCC-cchhHHHHHHHHhHHHHHH----------------HHHHHHHHhcCCchhhHHHHHHHHHhc
Confidence 88888888777643221 0001111111111111111 112233344556666666666666654
Q ss_pred CCccchhHHhHHHhhHHhcCCHHHHHHHHHhcC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH---
Q 036237 346 GFVVDGVLGTLLIQMYSKCGSIESALTVFRAIS---KKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAIT--- 419 (689)
Q Consensus 346 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--- 419 (689)
. +.|...+..-..+|...|++..|+.-++... ..+.....-+-..+...|+.+.++...++-.+ +.||...
T Consensus 185 ~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~ 261 (504)
T KOG0624|consen 185 Q-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFP 261 (504)
T ss_pred C-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHH
Confidence 3 4566777777778888888888876665443 35666666677777788888888888888776 5677542
Q ss_pred -HHHH---------HHHHhccCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC
Q 036237 420 -FIGV---------LNACSHAGLVNDGRRYFNMMINDYGIEPT-----IEHYGCLVDILCRTGYLEEAKSTIESM-PMRP 483 (689)
Q Consensus 420 -~~~l---------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p 483 (689)
|..| +......+.+.++....+...+ ..|. ...+..+-..+...|++.+|++...+. .+.|
T Consensus 262 ~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk---~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~ 338 (504)
T KOG0624|consen 262 FYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK---NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDP 338 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---cCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCc
Confidence 2111 1123345666677776666663 3344 233445566777788888888877765 4556
Q ss_pred C-HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchh
Q 036237 484 N-FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGC 521 (689)
Q Consensus 484 ~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 521 (689)
| +.++.--..+|.....++.|+.-|+++.+.+|++..+
T Consensus 339 ~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 339 DDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 5 6677777888888888888888888888888877543
No 92
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.70 E-value=1.1e-06 Score=86.90 Aligned_cols=226 Identities=12% Similarity=0.062 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCc-cchhHHhHHHhhH
Q 036237 283 TWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFV-VDGVLGTLLIQMY 361 (689)
Q Consensus 283 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~-~~~~~~~~li~~~ 361 (689)
...-+.++|...|+++.++. +..... .|.......+...+....+-+.+..-+......... .+..+......+|
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 34455566777777665443 332222 444444433333332222222332222222212212 2333334445667
Q ss_pred HhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCcHHHHH
Q 036237 362 SKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSH----AGLVNDGR 437 (689)
Q Consensus 362 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~ 437 (689)
...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+ +..|. +...+..++.. ...+.+|.
T Consensus 113 ~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~-~l~qLa~awv~l~~g~e~~~~A~ 187 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDS-ILTQLAEAWVNLATGGEKYQDAF 187 (290)
T ss_dssp CCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCH-HHHHHHHHHHHHHHTTTCCCHHH
T ss_pred HHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcH-HHHHHHHHHHHHHhCchhHHHHH
Confidence 7889999999998875 5677777889999999999999999999987 34443 34444444432 34689999
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh-HHHHHHHHHHhhc
Q 036237 438 RYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNK-DIGEYAANNLIKV 514 (689)
Q Consensus 438 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~ 514 (689)
.+|+++.. ...+++.+.+.+.-+....|++++|.+++.+. ...| |+.++..++......|+. +.+.+...++...
T Consensus 188 y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 188 YIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 99999985 45688899999999999999999999999885 3344 566788888888888887 7788899999999
Q ss_pred CCCCc
Q 036237 515 APDTI 519 (689)
Q Consensus 515 ~p~~~ 519 (689)
.|+.+
T Consensus 266 ~p~h~ 270 (290)
T PF04733_consen 266 NPNHP 270 (290)
T ss_dssp TTTSH
T ss_pred CCCCh
Confidence 99765
No 93
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.70 E-value=7e-05 Score=78.53 Aligned_cols=343 Identities=17% Similarity=0.161 Sum_probs=177.7
Q ss_pred HHHhcCChHHHHHHHhhCCCCCeeh--HHHHHHHHHhCCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHh
Q 036237 166 MYAKFGEIDLGRRVFDAMDDKDLVS--WNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFY 243 (689)
Q Consensus 166 ~~~~~g~~~~A~~~~~~m~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~ 243 (689)
+......+.+|..+++.+..+++.+ |..+..-|+..|+++-|.++|.+. ..++-.|..|.+.|+++.|.++-.
T Consensus 741 aai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~-----~~~~dai~my~k~~kw~da~kla~ 815 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA-----DLFKDAIDMYGKAGKWEDAFKLAE 815 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc-----chhHHHHHHHhccccHHHHHHHHH
Confidence 3344555666666666665544332 555566666666666666666553 234455666666666666666666
Q ss_pred hcCcCC--cchHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHH
Q 036237 244 RMPNRN--LVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVS 321 (689)
Q Consensus 244 ~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 321 (689)
+...|. ...|-+-..-.-+.|++.+|++++-.+..|+. -|..|-+.|..+..+++..+-...- -..|-..
T Consensus 816 e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d~---l~dt~~~ 887 (1636)
T KOG3616|consen 816 ECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGDH---LHDTHKH 887 (1636)
T ss_pred HhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChhh---hhHHHHH
Confidence 655443 33444444455566666666666666665543 2455666677776666665543211 1223444
Q ss_pred HHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCCh-----hhHHH------HHH
Q 036237 322 ALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKV-----GHWTA------MIV 390 (689)
Q Consensus 322 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~------li~ 390 (689)
+..-+...|++..|+.-|-... -+.+-++||-..+.+++|.++-+.-...+. ..|.. .+.
T Consensus 888 f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavk 958 (1636)
T KOG3616|consen 888 FAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVK 958 (1636)
T ss_pred HHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHH
Confidence 5556666777777776654332 355678889999999999888765433222 23322 122
Q ss_pred HHHHcCCHHH-------------HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc--CC-----C
Q 036237 391 GLGMHGMATQ-------------ALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDY--GI-----E 450 (689)
Q Consensus 391 ~~~~~g~~~~-------------A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~--~~-----~ 450 (689)
.+-++|-.++ |.++-+-..+.. .|. ....+..-+...|++++|-+.|-+.++-. ++ .
T Consensus 959 llnk~gll~~~id~a~d~~afd~afdlari~~k~k-~~~--vhlk~a~~ledegk~edaskhyveaiklntynitwcqav 1035 (1636)
T KOG3616|consen 959 LLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK-MGE--VHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQAV 1035 (1636)
T ss_pred HHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc-Ccc--chhHHhhhhhhccchhhhhHhhHHHhhcccccchhhhcc
Confidence 2333333333 333332222211 121 11223334567788888877776655311 10 1
Q ss_pred CChhHH---------HHHHHHHHhcCCHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc
Q 036237 451 PTIEHY---------GCLVDILCRTGYLEEAKSTIESMPMRPNFV--IWMSLLSGARNHGNKDIGEYAANNLIKVAPDTI 519 (689)
Q Consensus 451 p~~~~~---------~~li~~~~~~g~~~~A~~~~~~~~~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 519 (689)
|+..-. ..-+.++.+..+|+.|.++-+.-- ||.. ++..-..+....|++..|+.++-++ ..|+
T Consensus 1036 psrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h~--~~~l~dv~tgqar~aiee~d~~kae~fllra--nkp~-- 1109 (1636)
T KOG3616|consen 1036 PSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAHC--EDLLADVLTGQARGAIEEGDFLKAEGFLLRA--NKPD-- 1109 (1636)
T ss_pred cchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhhC--hhhhHHHHhhhhhccccccchhhhhhheeec--CCCc--
Confidence 110000 112344555555555555544321 2221 2222233334446666555543322 2342
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHH
Q 036237 520 GCYVVLSNIYAAAGQWDKVSEVRE 543 (689)
Q Consensus 520 ~~~~~L~~~~~~~g~~~~A~~~~~ 543 (689)
..++-|...+.|.+|.++-+
T Consensus 1110 ----i~l~yf~e~~lw~dalri~k 1129 (1636)
T KOG3616|consen 1110 ----IALNYFIEAELWPDALRIAK 1129 (1636)
T ss_pred ----hHHHHHHHhccChHHHHHHH
Confidence 23455667788888877654
No 94
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.70 E-value=1.8e-05 Score=82.31 Aligned_cols=257 Identities=14% Similarity=0.020 Sum_probs=148.0
Q ss_pred HHHHHHcCChHHHHHHHHHhccCCCCcChh-hHHHHHHHHHc----ccchhhHHHHHHHHHHhCCcc-chhHHhHHHhhH
Q 036237 288 IAGYELNGRFMEALELLETMLIGDVLPNDA-TLVSALSAVAG----LAVLNKGRWMHSYIVKNGFVV-DGVLGTLLIQMY 361 (689)
Q Consensus 288 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~----~~~~~~a~~i~~~~~~~g~~~-~~~~~~~li~~~ 361 (689)
...+...|++++|.+++++..+. .|+.. .+.. ...+.. .+..+.+.+.... .....| .......+...+
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~ 124 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDD--YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGL 124 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHH
Confidence 33456677788888877777654 23332 2221 112222 2333333333332 111122 233444556677
Q ss_pred HhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHhccCcHHH
Q 036237 362 SKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGM-KPTA--ITFIGVLNACSHAGLVND 435 (689)
Q Consensus 362 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~ 435 (689)
...|++++|.+.+++..+ .+...+..+...|...|++++|+..+++...... .|+. ..|..+...+...|++++
T Consensus 125 ~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~ 204 (355)
T cd05804 125 EEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEA 204 (355)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHH
Confidence 888888888888887765 3455677788888888888888888888776421 1232 234456677888888888
Q ss_pred HHHHHHHhHHhcCCCCChhHH-H--HHHHHHHhcCCHHHHHH------HHHhC-CCCCCHHHHHHHHHHHHhcCChHHHH
Q 036237 436 GRRYFNMMINDYGIEPTIEHY-G--CLVDILCRTGYLEEAKS------TIESM-PMRPNFVIWMSLLSGARNHGNKDIGE 505 (689)
Q Consensus 436 a~~~~~~~~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A~~------~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~ 505 (689)
|..+++.........+..... + .+...+...|....+.+ ..... +.............++...|+.+.|.
T Consensus 205 A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~ 284 (355)
T cd05804 205 ALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALD 284 (355)
T ss_pred HHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHH
Confidence 888888875221111111111 1 23333344443222222 21111 11111122234556677888899999
Q ss_pred HHHHHHhhcC-C--------CCchhHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 036237 506 YAANNLIKVA-P--------DTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRG 549 (689)
Q Consensus 506 ~~~~~~~~~~-p--------~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~ 549 (689)
..++.+.... . .........+.++...|++++|.+.+......+
T Consensus 285 ~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 285 KLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 8888876521 1 134456677888899999999999999887543
No 95
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.68 E-value=0.00024 Score=74.17 Aligned_cols=454 Identities=14% Similarity=0.096 Sum_probs=271.0
Q ss_pred HHHhcCCC--chHHHHHHHHHHHhCCCCCchHHHHHhhcccccCCCCHHHHHHHHhcccC--CCChhhHHHHHHHHHhCC
Q 036237 26 NILKFSST--HKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQ--HPSLVLYNLLIKCYVFNQ 101 (689)
Q Consensus 26 ~~l~~c~~--~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~~ll~~~~~~g 101 (689)
.+|+.... ...|......+++ +++-++.+....--.+.. .|+-++|......-.+ ..+-+.|..+.-.+-...
T Consensus 13 ~~lk~yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~--lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK 89 (700)
T KOG1156|consen 13 RALKCYETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNC--LGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDK 89 (700)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhc--ccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhh
Confidence 45554332 5667777777777 444444444322222333 6999999988766542 456678988888888889
Q ss_pred CchHHHHHHHHhHhCCCCCCc-ccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHH
Q 036237 102 RSHEALTLFCDLLDRFLLPDN-FTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVF 180 (689)
Q Consensus 102 ~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 180 (689)
++++|++.|+..+..+ ||. ..+.-+----++.|+++..........+.. +.....|..+..++.-.|+...|..+.
T Consensus 90 ~Y~eaiKcy~nAl~~~--~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il 166 (700)
T KOG1156|consen 90 KYDEAIKCYRNALKIE--KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEIL 166 (700)
T ss_pred hHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998764 443 444444333456778887777777777664 445567888888888999999999998
Q ss_pred hhCCC-----CCeehHHHH------HHHHHhCCChHHHHHHHhhCCCC--Ccch-HHHHHHHHHhCCChHHHHHHHhhcC
Q 036237 181 DAMDD-----KDLVSWNCL------IDGYVKKGEVEVAMKLFDEMPDR--DLFS-WTCLVDGFSKCGKVEIAREIFYRMP 246 (689)
Q Consensus 181 ~~m~~-----~~~~~~~~l------i~~~~~~g~~~~A~~~~~~m~~~--d~~~-~~~li~~~~~~g~~~~A~~~~~~~~ 246 (689)
++..+ ++...+... .....+.|..++|++.+..-... |-.. --.-...+.+.+++++|..++..++
T Consensus 167 ~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll 246 (700)
T KOG1156|consen 167 EEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLL 246 (700)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHH
Confidence 87652 333333322 34566789999999988776542 3333 2345567889999999999999998
Q ss_pred cCCc---chHHHHHHHHHhcCCHHHHH-HHHHhcCCC---ChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhH
Q 036237 247 NRNL---VSWNAMINGYMKAGDVDSAC-ELFDDMEIR---DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATL 319 (689)
Q Consensus 247 ~~~~---~~~~~li~~~~~~g~~~~A~-~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 319 (689)
.+++ ..|-.+..++++-.+.-++. .+|....+. ....-..=++......-.+..-+++..+++.|+++--..+
T Consensus 247 ~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl 326 (700)
T KOG1156|consen 247 ERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDL 326 (700)
T ss_pred hhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhh
Confidence 7543 33444555555444444444 555554422 1110000011111112233344566667777765533332
Q ss_pred HHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHH--hcCCCChhhHH--HHHHHHHHc
Q 036237 320 VSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFR--AISKKKVGHWT--AMIVGLGMH 395 (689)
Q Consensus 320 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~--~~~~~~~~~~~--~li~~~~~~ 395 (689)
.++ +-.. .... +. ..++..|...-.-..+....+ +...|....|+ -++..|-..
T Consensus 327 ~SL---yk~p---~k~~-~l---------------e~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~ 384 (700)
T KOG1156|consen 327 RSL---YKDP---EKVA-FL---------------EKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKL 384 (700)
T ss_pred HHH---Hhch---hHhH-HH---------------HHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHc
Confidence 222 1111 1110 11 112222211100000000000 01234445555 467788889
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 036237 396 GMATQALDLFNKMCRMGMKPTAI-TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKS 474 (689)
Q Consensus 396 g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 474 (689)
|+++.|+..++.... -.|+.+ -|..-...+.+.|++++|..++++..+ --.||...-.--+.-..++.+.++|.+
T Consensus 385 g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e--lD~aDR~INsKcAKYmLrAn~i~eA~~ 460 (700)
T KOG1156|consen 385 GDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE--LDTADRAINSKCAKYMLRANEIEEAEE 460 (700)
T ss_pred ccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh--ccchhHHHHHHHHHHHHHccccHHHHH
Confidence 999999999999886 467755 565666788999999999999998873 223444433355667788999999998
Q ss_pred HHHhCCCCC-C--------HHHHHHH--HHHHHhcCChHHHHHHHHHH
Q 036237 475 TIESMPMRP-N--------FVIWMSL--LSGARNHGNKDIGEYAANNL 511 (689)
Q Consensus 475 ~~~~~~~~p-~--------~~~~~~l--l~~~~~~g~~~~a~~~~~~~ 511 (689)
+.....-.. + .-.|-.+ ..+|.++|++.+|.+-+..+
T Consensus 461 ~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 461 VLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 877653111 1 1234433 34577888888777665544
No 96
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=4.8e-05 Score=77.59 Aligned_cols=414 Identities=15% Similarity=0.081 Sum_probs=222.3
Q ss_pred CCCHHHHHHHHhcccC--CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCC-cccHHHHHHHHHhcCChHHHHHH
Q 036237 68 INNLHYARSIFDRILQ--HPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPD-NFTLPCVIKGAARLGAIKEGKQI 144 (689)
Q Consensus 68 ~g~~~~A~~~f~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~ 144 (689)
.|+++.|...|-+... ++|-+.|..-..+|+..|++++|++--.+-++. .|+ .--|...-.++...|++++|..-
T Consensus 15 ~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~eA~~a 92 (539)
T KOG0548|consen 15 SGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEEAILA 92 (539)
T ss_pred cccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHHHHHH
Confidence 6889999988876543 567778888888899999988888776666553 444 34577777788888899999888
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCeehHHHH-----HHHHHhCCChHHHHHHHhhCCCCCc
Q 036237 145 HGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCL-----IDGYVKKGEVEVAMKLFDEMPDRDL 219 (689)
Q Consensus 145 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~l-----i~~~~~~g~~~~A~~~~~~m~~~d~ 219 (689)
|..-++.. +.+...++.|.+++.- + ..+.+.|. ++..|..+ .+.+...-.+..-++.+..-+. +.
T Consensus 93 y~~GL~~d-~~n~~L~~gl~~a~~~--~-~~~~~~~~-----~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~-~l 162 (539)
T KOG0548|consen 93 YSEGLEKD-PSNKQLKTGLAQAYLE--D-YAADQLFT-----KPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPT-SL 162 (539)
T ss_pred HHHHhhcC-CchHHHHHhHHHhhhH--H-HHhhhhcc-----CcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcH-hh
Confidence 88877765 5566777888877711 1 11111111 11112111 1112222112111111111110 00
Q ss_pred ch---HHHHHHHHHhCCChHHH-HH-----HHhhcCcC----------------------CcchHHHHHHHHHhcCCHHH
Q 036237 220 FS---WTCLVDGFSKCGKVEIA-RE-----IFYRMPNR----------------------NLVSWNAMINGYMKAGDVDS 268 (689)
Q Consensus 220 ~~---~~~li~~~~~~g~~~~A-~~-----~~~~~~~~----------------------~~~~~~~li~~~~~~g~~~~ 268 (689)
-. ...++.+.......+.- .. ....+..| ...-...+.++.-+..+++.
T Consensus 163 ~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 163 KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 00 00111111100000000 00 00000000 02223344455555555555
Q ss_pred HHHHHHhcCCC--ChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhC
Q 036237 269 ACELFDDMEIR--DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNG 346 (689)
Q Consensus 269 A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 346 (689)
|.+-++..... ++.-++....+|...|.+.+....-....+.|.. ...-|+.+-
T Consensus 243 a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIa----------------------- 298 (539)
T KOG0548|consen 243 AIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIA----------------------- 298 (539)
T ss_pred HHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHH-----------------------
Confidence 55555444322 2223444445555555555554444443322210 000000000
Q ss_pred CccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHH
Q 036237 347 FVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI-TFIGVLN 425 (689)
Q Consensus 347 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~ 425 (689)
.....+..+|.+.++++.|+..|.+...+... -....+....++++...+...- +.|+.. -...-.+
T Consensus 299 -----k~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGn 366 (539)
T KOG0548|consen 299 -----KALARLGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGN 366 (539)
T ss_pred -----HHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHH
Confidence 01111344677778888888888775432111 1122233445566655555443 344432 1222356
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChHH
Q 036237 426 ACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRPNF-VIWMSLLSGARNHGNKDI 503 (689)
Q Consensus 426 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~ 503 (689)
.+.+.|++..|...|.++++. -+-|...|..-.-+|.+.|.+.+|++-.+.. ...|+. ..|.--..++....+++.
T Consensus 367 e~Fk~gdy~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydk 444 (539)
T KOG0548|consen 367 EAFKKGDYPEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDK 444 (539)
T ss_pred HHHhccCHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Confidence 677889999999999998842 2445788888888999999988888776654 344543 355555666666678999
Q ss_pred HHHHHHHHhhcCCCCchhHHHHHHHHHh
Q 036237 504 GEYAANNLIKVAPDTIGCYVVLSNIYAA 531 (689)
Q Consensus 504 a~~~~~~~~~~~p~~~~~~~~L~~~~~~ 531 (689)
|...|++.++.+|++......+..++..
T Consensus 445 Aleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 445 ALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 9999999999999887776666666654
No 97
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.68 E-value=1.9e-05 Score=83.97 Aligned_cols=125 Identities=17% Similarity=0.216 Sum_probs=96.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHH
Q 036237 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI-TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVD 461 (689)
Q Consensus 384 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~ 461 (689)
++.-+...|-..|++++|++.+++.++ ..|+.+ .|..-...+-+.|++++|.+.++..+ .+.+. -..-+-.+.
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~--htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar---~LD~~DRyiNsK~aK 270 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIE--HTPTLVELYMTKARILKHAGDLKEAAEAMDEAR---ELDLADRYINSKCAK 270 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hCChhhHHHHHHHHH
Confidence 345667788899999999999999998 467744 77788889999999999999999988 34454 344455677
Q ss_pred HHHhcCCHHHHHHHHHhCCC---CC--C----HHHH--HHHHHHHHhcCChHHHHHHHHHHhh
Q 036237 462 ILCRTGYLEEAKSTIESMPM---RP--N----FVIW--MSLLSGARNHGNKDIGEYAANNLIK 513 (689)
Q Consensus 462 ~~~~~g~~~~A~~~~~~~~~---~p--~----~~~~--~~ll~~~~~~g~~~~a~~~~~~~~~ 513 (689)
.+.|+|+.++|.+++..... .| | ...| .....+|.+.|++..|++-+..+.+
T Consensus 271 y~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 271 YLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 88899999999999887631 12 1 1234 4456778999999999988877765
No 98
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=1.6e-05 Score=80.91 Aligned_cols=216 Identities=11% Similarity=0.024 Sum_probs=153.2
Q ss_pred HHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCChh----------hHHHH
Q 036237 319 LVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVG----------HWTAM 388 (689)
Q Consensus 319 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~l 388 (689)
...+.++..+..+++.+.+-+...+... .+..-++....+|...|.+.+....-+...+.+.. ....+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 3445566666677777777777777665 56666667777788888877776665554442211 12224
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcC
Q 036237 389 IVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTI-EHYGCLVDILCRTG 467 (689)
Q Consensus 389 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g 467 (689)
..+|.+.++++.|+..|.+....-..||..+ +....+++....+... -+.|.. .-...=...+.+.|
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhcc
Confidence 4567777888999999988766544444322 2233445554444433 344543 11112266788999
Q ss_pred CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHH
Q 036237 468 YLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMM 545 (689)
Q Consensus 468 ~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m 545 (689)
++.+|...+.++ ...| |...|.....+|.+.|++..|+.-.+..++++|+.+..|..=+-++....+|++|.+.+.+-
T Consensus 373 dy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999987 3335 67799999999999999999999999999999999999999999999999999999999876
Q ss_pred HhC
Q 036237 546 KKR 548 (689)
Q Consensus 546 ~~~ 548 (689)
.+.
T Consensus 453 le~ 455 (539)
T KOG0548|consen 453 LEL 455 (539)
T ss_pred Hhc
Confidence 653
No 99
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.65 E-value=1.6e-05 Score=86.21 Aligned_cols=439 Identities=13% Similarity=0.041 Sum_probs=236.1
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCC-CCchhHHHHHHHHH
Q 036237 89 LYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGF-GFDKFVLSSLVSMY 167 (689)
Q Consensus 89 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~ 167 (689)
.|..|..-|...-+...|...|+...+.. ..|......+...+++..+++.|..+.-..-+... ..-..-|....-.|
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 46666666665556666666666665542 12444556666666666777766666222111110 00111222233445
Q ss_pred HhcCChHHHHHHHhhCCC---CCeehHHHHHHHHHhCCChHHHHHHHhhCCCCCcc-hHHH--HHHHHHhCCChHHHHHH
Q 036237 168 AKFGEIDLGRRVFDAMDD---KDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLF-SWTC--LVDGFSKCGKVEIAREI 241 (689)
Q Consensus 168 ~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~-~~~~--li~~~~~~g~~~~A~~~ 241 (689)
.+.++...|..-|+.... .|...|..+..+|.+.|++..|+++|++...-++. +|.. ....-+..|.+.+|+..
T Consensus 573 Lea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~ 652 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDA 652 (1238)
T ss_pred cCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHH
Confidence 566666666666665443 35566777777777777777777777666542222 2221 22234556777777776
Q ss_pred HhhcCcC---C-------cchHHHHHHHHHhcCCHHHHHHHHHhcCC-----------CChHHHHHHHHHHHHcCChHHH
Q 036237 242 FYRMPNR---N-------LVSWNAMINGYMKAGDVDSACELFDDMEI-----------RDLITWNSMIAGYELNGRFMEA 300 (689)
Q Consensus 242 ~~~~~~~---~-------~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A 300 (689)
+...... - ..++-.+...+.-.|-..+|...|++-.+ .+...|-.+ ..|
T Consensus 653 l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~a----------sda 722 (1238)
T KOG1127|consen 653 LGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVA----------SDA 722 (1238)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHH----------hHH
Confidence 6665431 0 11111111222222222233333322211 011122211 223
Q ss_pred HHHHHHhccCCCCcChhhHHHHHHHHHcccch---hh-HHHHHHHHHHhCCccchhHHhHHHhhHHh----cC----CHH
Q 036237 301 LELLETMLIGDVLPNDATLVSALSAVAGLAVL---NK-GRWMHSYIVKNGFVVDGVLGTLLIQMYSK----CG----SIE 368 (689)
Q Consensus 301 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~---~~-a~~i~~~~~~~g~~~~~~~~~~li~~~~~----~g----~~~ 368 (689)
..+|-+... + .|+......+..-.-..+.. +- ...+-.......+..+...|..|+.-|.+ +| +..
T Consensus 723 c~~f~q~e~-~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~ 800 (1238)
T KOG1127|consen 723 CYIFSQEEP-S-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDAC 800 (1238)
T ss_pred HHHHHHhcc-c-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHH
Confidence 334433321 1 22222222222212222222 10 00010111111122233344444443333 22 223
Q ss_pred HHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 036237 369 SALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN 445 (689)
Q Consensus 369 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 445 (689)
.|...+....+ .+...||+|.-. ...|++.-|...|-+-.... +-+..+|..+.-.|....+++.|...|...+
T Consensus 801 ~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~q- 877 (1238)
T KOG1127|consen 801 TAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ- 877 (1238)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhh-
Confidence 56666665443 677889988776 66688888888777766532 3346688888888899999999999999887
Q ss_pred hcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCChHHHHH----------H
Q 036237 446 DYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESM-------PMRPNFVIWMSLLSGARNHGNKDIGEY----------A 507 (689)
Q Consensus 446 ~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~ll~~~~~~g~~~~a~~----------~ 507 (689)
.+.|+ ...|--..-.....|+.-++..+|..- +.-|+..-|.....-...+|+.+.-+. .
T Consensus 878 --SLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~a 955 (1238)
T KOG1127|consen 878 --SLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLA 955 (1238)
T ss_pred --hcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHH
Confidence 56665 455544444555778888888888752 223566666655555566666665443 3
Q ss_pred HHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHH
Q 036237 508 ANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMM 545 (689)
Q Consensus 508 ~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m 545 (689)
.++.+...|+...+|...+....+.+.+++|.++..+.
T Consensus 956 l~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 956 LSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred HHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 44556678998889999999999999998888877665
No 100
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.63 E-value=0.00067 Score=72.50 Aligned_cols=199 Identities=15% Similarity=0.130 Sum_probs=112.8
Q ss_pred CchHHHHHhhcccccCCCCHHHHHHHHhcccC------------CCChhhHHHHHHH-HHhCCCchHHHHHHHHhHhCCC
Q 036237 52 HSGISSRLLSLYVDPHINNLHYARSIFDRILQ------------HPSLVLYNLLIKC-YVFNQRSHEALTLFCDLLDRFL 118 (689)
Q Consensus 52 ~~~~~~~ll~~~~~~~~g~~~~A~~~f~~~~~------------~~~~~~~~~ll~~-~~~~g~~~~a~~~~~~m~~~g~ 118 (689)
+..+|..+.+|+.+ ..+++-|.-.+-.|.. .++ . -.+-..+ -.+.|..++|..+|++-.+
T Consensus 756 S~~vW~nmA~McVk--T~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e-~eakvAvLAieLgMlEeA~~lYr~ckR--- 828 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVK--TRRLDVAKVCLGHMKNARGARALRRAQQNGE-E-DEAKVAVLAIELGMLEEALILYRQCKR--- 828 (1416)
T ss_pred hhHHHHHHHHHhhh--hccccHHHHhhhhhhhhhhHHHHHHHHhCCc-c-hhhHHHHHHHHHhhHHHHHHHHHHHHH---
Confidence 45789999999999 8888888777776653 222 1 1112222 2456888999999988765
Q ss_pred CCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC-------------
Q 036237 119 LPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD------------- 185 (689)
Q Consensus 119 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------------- 185 (689)
|..|=+.|-..|.+++|.++-+.--+-.+. .||..-..-+-..+|.+.|++.|++...
T Consensus 829 ------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p 899 (1416)
T KOG3617|consen 829 ------YDLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYP 899 (1416)
T ss_pred ------HHHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhCh
Confidence 344445566778888888876543222221 2444444445556777777777775431
Q ss_pred ----------CCeehHHHHHHHHHhCCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHhhcCcCCcchHHH
Q 036237 186 ----------KDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNA 255 (689)
Q Consensus 186 ----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 255 (689)
+|...|.-...-+-..|..+.|+.+|...++ |-++++..|-.|+.++|-++-++- .|......
T Consensus 900 ~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-----~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYh 972 (1416)
T KOG3617|consen 900 KQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-----YFSMVRIKCIQGKTDKAARIAEES--GDKAACYH 972 (1416)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----hhhheeeEeeccCchHHHHHHHhc--ccHHHHHH
Confidence 2444455555555556888888888876642 333344444444444444443322 12223333
Q ss_pred HHHHHHhcCCHHHHHHHH
Q 036237 256 MINGYMKAGDVDSACELF 273 (689)
Q Consensus 256 li~~~~~~g~~~~A~~~~ 273 (689)
|.++|-..|++.+|..+|
T Consensus 973 laR~YEn~g~v~~Av~Ff 990 (1416)
T KOG3617|consen 973 LARMYENDGDVVKAVKFF 990 (1416)
T ss_pred HHHHhhhhHHHHHHHHHH
Confidence 344444444444444443
No 101
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=0.0016 Score=71.21 Aligned_cols=209 Identities=15% Similarity=0.198 Sum_probs=135.2
Q ss_pred CChHHHHHHHhhCCCCCeehHHHHHHHHHhCCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHhhcCc--C
Q 036237 171 GEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPN--R 248 (689)
Q Consensus 171 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~ 248 (689)
+.++.|.+.-++..+| ..|..+..+-.+.|.+.+|++-|-+. .|+..|..++..+.+.|.+++-.+.+..+.+ .
T Consensus 1089 ~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~ 1164 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR 1164 (1666)
T ss_pred hhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc
Confidence 5566666666655544 56999999999999999999988654 4667899999999999999999998877765 4
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhcCC-----------------------CChHHHHHHHHHHHHcCChHHHHHHHH
Q 036237 249 NLVSWNAMINGYMKAGDVDSACELFDDMEI-----------------------RDLITWNSMIAGYELNGRFMEALELLE 305 (689)
Q Consensus 249 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------------------~~~~~~~~li~~~~~~g~~~~A~~~~~ 305 (689)
.+.+-+.||-+|++.+++.+-+++...-.. .++..|..|...+...|++..|.+.-+
T Consensus 1165 E~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1165 EPYIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred CccchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 467778999999999999887776543210 033345555555666666666655544
Q ss_pred HhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC---CCh
Q 036237 306 TMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK---KKV 382 (689)
Q Consensus 306 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~ 382 (689)
+. .+..||..+-.+|...+.+..|. +-..++.....-..-|+.-|-..|-+++-+.+++.... ...
T Consensus 1245 KA------ns~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHM 1313 (1666)
T KOG0985|consen 1245 KA------NSTKTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHM 1313 (1666)
T ss_pred hc------cchhHHHHHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHH
Confidence 33 24456666666666555444332 11111222233334466666667777776666665432 234
Q ss_pred hhHHHHHHHHHH
Q 036237 383 GHWTAMIVGLGM 394 (689)
Q Consensus 383 ~~~~~li~~~~~ 394 (689)
..|+-|.-.|++
T Consensus 1314 gmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1314 GMFTELAILYSK 1325 (1666)
T ss_pred HHHHHHHHHHHh
Confidence 455555555554
No 102
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.58 E-value=4.6e-06 Score=81.09 Aligned_cols=179 Identities=12% Similarity=0.046 Sum_probs=114.6
Q ss_pred chhHHhHHHhhHHhcCCHHHHHHHHHhcCC--C-Ch---hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----H
Q 036237 350 DGVLGTLLIQMYSKCGSIESALTVFRAISK--K-KV---GHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI----T 419 (689)
Q Consensus 350 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t 419 (689)
....+..+...|.+.|++++|...|+++.. | +. ..|..+..+|.+.|++++|+..++++.+. .|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 345556666677777777777777776654 2 11 35566777777777777777777777763 33322 3
Q ss_pred HHHHHHHHhcc--------CcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 036237 420 FIGVLNACSHA--------GLVNDGRRYFNMMINDYGIEPTI-EHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMS 490 (689)
Q Consensus 420 ~~~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 490 (689)
+..+..++... |+.++|.+.|+.+... .|+. ..+..+... +...... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHHH
Confidence 44444444433 5677777777777632 3332 222211111 0011000 001124
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCC---chhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 491 LLSGARNHGNKDIGEYAANNLIKVAPDT---IGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 491 ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
+...+...|+++.|+..++++++..|++ +..+..++.+|.+.|++++|..+++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5566888999999999999999987754 468899999999999999999999988754
No 103
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.57 E-value=4.8e-05 Score=72.99 Aligned_cols=307 Identities=11% Similarity=0.039 Sum_probs=200.6
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhhCCCCCeehHHHHH---HHHHhCCChHHHHHHHhhCCCCCcchHHHH---HHHH
Q 036237 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLI---DGYVKKGEVEVAMKLFDEMPDRDLFSWTCL---VDGF 229 (689)
Q Consensus 156 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~d~~~~~~l---i~~~ 229 (689)
++.-.--|...+...|++.+|+.-|....+-|+..|-++. ..|...|+...|+.-|.+..+--+..+.+- ...+
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhh
Confidence 4444456777788899999999999999999999888875 478888999999998888876322222222 3357
Q ss_pred HhCCChHHHHHHHhhcCcCCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHhcc
Q 036237 230 SKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLI 309 (689)
Q Consensus 230 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 309 (689)
.+.|.++.|..-|+.+++.++.- +....++.+.--.++-+. .-..+..+...|+...|++....+++
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~~------------l~~ql~s~~~~GD~~~ai~~i~~llE 183 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHWV------------LVQQLKSASGSGDCQNAIEMITHLLE 183 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHHH------------HHHHHHHHhcCCchhhHHHHHHHHHh
Confidence 89999999999999988744311 111122222211111111 11233344556777777777777665
Q ss_pred CCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCChh------
Q 036237 310 GDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVG------ 383 (689)
Q Consensus 310 ~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------ 383 (689)
-. +.|...+..-..+|...|.+..|+.-+..+.+..-. ++...--+-..+...|+.+.++...++..+-|+.
T Consensus 184 i~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~ 261 (504)
T KOG0624|consen 184 IQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFP 261 (504)
T ss_pred cC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHH
Confidence 32 234445555556666677777766666655554422 3334444566677778888777777777653221
Q ss_pred hHHHH---------HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHhccCcHHHHHHHHHHhHHhcCCCC
Q 036237 384 HWTAM---------IVGLGMHGMATQALDLFNKMCRMGMKPTAITF---IGVLNACSHAGLVNDGRRYFNMMINDYGIEP 451 (689)
Q Consensus 384 ~~~~l---------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 451 (689)
.|-.+ +......+++.++++-.+...+.......++| ..+-.++...|.+.+|++...+.. .+.|
T Consensus 262 ~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL---~~d~ 338 (504)
T KOG0624|consen 262 FYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL---DIDP 338 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHH---hcCc
Confidence 12111 22345678899999988888774322223333 344456677899999999999888 5677
Q ss_pred C-hhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 036237 452 T-IEHYGCLVDILCRTGYLEEAKSTIESMP 480 (689)
Q Consensus 452 ~-~~~~~~li~~~~~~g~~~~A~~~~~~~~ 480 (689)
+ +.++.--.++|.-...+++|+.-|+...
T Consensus 339 ~dv~~l~dRAeA~l~dE~YD~AI~dye~A~ 368 (504)
T KOG0624|consen 339 DDVQVLCDRAEAYLGDEMYDDAIHDYEKAL 368 (504)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 7 7888888889999999999999998873
No 104
>PF12854 PPR_1: PPR repeat
Probab=98.57 E-value=8.5e-08 Score=60.40 Aligned_cols=33 Identities=30% Similarity=0.486 Sum_probs=27.5
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC
Q 036237 152 GFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD 184 (689)
Q Consensus 152 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 184 (689)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 678888888888888888888888888888874
No 105
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=6.4e-05 Score=70.76 Aligned_cols=298 Identities=11% Similarity=0.059 Sum_probs=156.5
Q ss_pred hCCChHHHHHHHhhcCc-CCcchHHHHHHHHHhcCCHHHHHHHHHhcCC----CChHHHHHHHHHHHHcCChHHHHHHHH
Q 036237 231 KCGKVEIAREIFYRMPN-RNLVSWNAMINGYMKAGDVDSACELFDDMEI----RDLITWNSMIAGYELNGRFMEALELLE 305 (689)
Q Consensus 231 ~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~ 305 (689)
+.+++..+..+.++... .+..+.+...-...+.|+.+.|.+-|....+ .....||.-+. ..+.|++..|+++..
T Consensus 124 se~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iS 202 (459)
T KOG4340|consen 124 SEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHIS 202 (459)
T ss_pred ccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHH
Confidence 34555555555555552 3344444444455566666666666665543 23456665443 446678888888888
Q ss_pred HhccCCCCcChhhH----HHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCC-
Q 036237 306 TMLIGDVLPNDATL----VSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKK- 380 (689)
Q Consensus 306 ~m~~~g~~p~~~t~----~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~- 380 (689)
++.+.|++.-+..- ...+. ...+..-..++... -+..+|.-...+.+.|+.+.|.+.+-.|+.+
T Consensus 203 EIieRG~r~HPElgIGm~tegiD----vrsvgNt~~lh~Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRa 271 (459)
T KOG4340|consen 203 EIIERGIRQHPELGIGMTTEGID----VRSVGNTLVLHQSA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRA 271 (459)
T ss_pred HHHHhhhhcCCccCccceeccCc----hhcccchHHHHHHH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcc
Confidence 88777654221100 00000 00000000111100 0122333344567889999999999999864
Q ss_pred ----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHH
Q 036237 381 ----KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHY 456 (689)
Q Consensus 381 ----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 456 (689)
|++|...+.-.= ..+++.+..+-+.-+.+... -...||..++-.|++..-++-|-.++.+-....-.-.+...|
T Consensus 272 E~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly 349 (459)
T KOG4340|consen 272 EEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLY 349 (459)
T ss_pred cccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHH
Confidence 667665543322 24555555555555555322 235699999999999999998888775432100001123333
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChH----HHHHHHHHHhhcCCCCchhHHHHHHHH
Q 036237 457 GCLVDILC-RTGYLEEAKSTIESMPMRPN--FVIWMSLLSGARNHGNKD----IGEYAANNLIKVAPDTIGCYVVLSNIY 529 (689)
Q Consensus 457 ~~li~~~~-~~g~~~~A~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~----~a~~~~~~~~~~~p~~~~~~~~L~~~~ 529 (689)
+ |++++. ..-..++|++-++.+...-. ......-+.- .++.+-+ .++.-++..+++.- .+...-++.|
T Consensus 350 ~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe-~r~~~dd~a~R~ai~~Yd~~LE~YL---PVlMa~Akiy 424 (459)
T KOG4340|consen 350 D-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQE-ARHNRDDEAIRKAVNEYDETLEKYL---PVLMAQAKIY 424 (459)
T ss_pred H-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcccHHHHHHHHHHHHHHHHHHH---HHHHHHHHhh
Confidence 3 344443 34466777766655420000 0000000111 1222222 23334444554321 2566778889
Q ss_pred HhcCCcchHHHHHHHHHh
Q 036237 530 AAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 530 ~~~g~~~~A~~~~~~m~~ 547 (689)
.+..++..+.++|..-.+
T Consensus 425 W~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 425 WNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred ccccccHHHHHHHHHHHh
Confidence 999999999999987654
No 106
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.51 E-value=3e-05 Score=72.89 Aligned_cols=300 Identities=15% Similarity=0.107 Sum_probs=166.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHhhcCcCC---cchHHHHHHHHHhcCCHHHHHHHHHhcCCC--ChHHHHH-HHHHHHHcC
Q 036237 222 WTCLVDGFSKCGKVEIAREIFYRMPNRN---LVSWNAMINGYMKAGDVDSACELFDDMEIR--DLITWNS-MIAGYELNG 295 (689)
Q Consensus 222 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~-li~~~~~~g 295 (689)
+++++..+.+..+++.|++++..-.+.+ ....+.|...|-...++..|-..++++... ...-|.. -...+-+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 5566666677777777877776665533 344556667777777777777777776542 2222221 134455667
Q ss_pred ChHHHHHHHHHhccCCCCcChhhHHHHHHH--HHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHH
Q 036237 296 RFMEALELLETMLIGDVLPNDATLVSALSA--VAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTV 373 (689)
Q Consensus 296 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a--~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 373 (689)
.+.+|+.+...|... |+...-..-+.+ ..+.+++..++.+.++.-.. .+..+.+...-...+.|+++.|.+-
T Consensus 93 i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred ccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHH
Confidence 777777777777542 222111111111 12334444444444333211 1233333333344455666666666
Q ss_pred HHhcCC----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC
Q 036237 374 FRAISK----KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGI 449 (689)
Q Consensus 374 ~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 449 (689)
|+...+ .....||.-+. ..+.|+++.|++...+..++|++..+.. + -|...++..+ +. --
T Consensus 167 FqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPEl-g--------IGm~tegiDv-rs-----vg 230 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPEL-G--------IGMTTEGIDV-RS-----VG 230 (459)
T ss_pred HHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCcc-C--------ccceeccCch-hc-----cc
Confidence 655543 22334443333 2334555666666666555554322110 0 0000000000 00 00
Q ss_pred CCChhHHHHHH-------HHHHhcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 036237 450 EPTIEHYGCLV-------DILCRTGYLEEAKSTIESMP----MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDT 518 (689)
Q Consensus 450 ~p~~~~~~~li-------~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 518 (689)
.|-.-+-+.++ ..+.+.|+++.|.+.+-.|| .+.|++|...+.-. -..+++..+.+-+.-+++++|--
T Consensus 231 Nt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP 309 (459)
T KOG4340|consen 231 NTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFP 309 (459)
T ss_pred chHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCC
Confidence 01112223333 34578899999999999996 33578887665432 23466777888888889999988
Q ss_pred chhHHHHHHHHHhcCCcchHHHHHHH
Q 036237 519 IGCYVVLSNIYAAAGQWDKVSEVREM 544 (689)
Q Consensus 519 ~~~~~~L~~~~~~~g~~~~A~~~~~~ 544 (689)
+.++..+.-+|++..-++-|..++.+
T Consensus 310 ~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 310 PETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred hHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 89999999999999999999888754
No 107
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.51 E-value=0.00031 Score=73.09 Aligned_cols=193 Identities=11% Similarity=0.002 Sum_probs=93.2
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhHhCCC-CCCcccHHH-HHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHH---H
Q 036237 89 LYNLLIKCYVFNQRSHEALTLFCDLLDRFL-LPDNFTLPC-VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSS---L 163 (689)
Q Consensus 89 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~---l 163 (689)
.|..+...+...|+++.+.+.+....+... .++...... ....+...|+++++..+++.+++.. +.|...+.. +
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHH
Confidence 455555666666777777666666554321 112111111 1123346678888888888877664 334433331 1
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCCee---hHHHHHHHHHhCCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhCCChHH
Q 036237 164 VSMYAKFGEIDLGRRVFDAMDDKDLV---SWNCLIDGYVKKGEVEVAMKLFDEMPD--R-DLFSWTCLVDGFSKCGKVEI 237 (689)
Q Consensus 164 i~~~~~~g~~~~A~~~~~~m~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~g~~~~ 237 (689)
.......+..+.+.+.++.....+.. .+..+...+...|++++|...+++..+ | +...+..+...+...|++++
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~e 166 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKE 166 (355)
T ss_pred HHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHH
Confidence 22222234455555555432221111 222233455555666666555555543 2 22334444444444555555
Q ss_pred HHHHHhhcCcCCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCC--hHHHHHHHHHHHHcCChHHHHHHHHHhc
Q 036237 238 AREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRD--LITWNSMIAGYELNGRFMEALELLETML 308 (689)
Q Consensus 238 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 308 (689)
|...+++..+.... .++ ...|..+...+...|++++|+.++++..
T Consensus 167 A~~~l~~~l~~~~~--------------------------~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 167 GIAFMESWRDTWDC--------------------------SSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHHhhhhccCC--------------------------CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 55444443321000 011 1234456666777777777777777764
No 108
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.50 E-value=3.6e-06 Score=74.31 Aligned_cols=121 Identities=11% Similarity=0.018 Sum_probs=84.1
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 036237 403 DLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP-TIEHYGCLVDILCRTGYLEEAKSTIESM-P 480 (689)
Q Consensus 403 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~ 480 (689)
.+|++..+ +.|+. +..+..++...|++++|...|+... .+.| +...|..+..++.+.|++++|...|++. .
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLV---MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34445444 34543 3345566677777777777777776 2334 4667777777777778888877777775 2
Q ss_pred CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 036237 481 MRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYA 530 (689)
Q Consensus 481 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~ 530 (689)
..| +...|..+..++...|+.++|+..+++++++.|+++..+...+++..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 333 66677888888888888888888888888888888877777666543
No 109
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.47 E-value=1.4e-05 Score=89.56 Aligned_cols=201 Identities=14% Similarity=0.197 Sum_probs=169.1
Q ss_pred ccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCC--------ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 036237 348 VVDGVLGTLLIQMYSKCGSIESALTVFRAISKK--------KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAIT 419 (689)
Q Consensus 348 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 419 (689)
+.....|-..|......+++++|++++++.... -...|.++++.-...|.-+...++|++..+. .-....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 344666777788888899999999999987651 3458999999888899888999999999873 223446
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHH
Q 036237 420 FIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP---NFVIWMSLLSGA 495 (689)
Q Consensus 420 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~~ 495 (689)
|..|..-|.+.+.+++|.++++.|.++++ .....|...++.+.+...-+.|..++.++ ..-| ......-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88899999999999999999999998766 67788999999999999999999999875 2223 344555566667
Q ss_pred HhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCCCcc
Q 036237 496 RNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRK 552 (689)
Q Consensus 496 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~~~~ 552 (689)
.++||.+.+..+|+..+.-.|.....+..++++=.+.|..+.++.+|++....++.+
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 889999999999999999999999999999999999999999999999999887753
No 110
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.46 E-value=8.6e-06 Score=76.09 Aligned_cols=118 Identities=8% Similarity=0.075 Sum_probs=95.0
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcCC--hHHH
Q 036237 430 AGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGA-RNHGN--KDIG 504 (689)
Q Consensus 430 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~-~~~g~--~~~a 504 (689)
.++.+++...++...+ .-+.+...|..|...|...|++++|...+++. ...| +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 5566777777777663 23445788888888999999999999988876 3445 566777777764 66676 5999
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 036237 505 EYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRG 549 (689)
Q Consensus 505 ~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~ 549 (689)
..+++++++.+|+++.++..|+..+.+.|++++|...++++.+..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999987643
No 111
>PF12854 PPR_1: PPR repeat
Probab=98.44 E-value=3.3e-07 Score=57.70 Aligned_cols=32 Identities=34% Similarity=0.693 Sum_probs=22.4
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 036237 448 GIEPTIEHYGCLVDILCRTGYLEEAKSTIESM 479 (689)
Q Consensus 448 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 479 (689)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777777666
No 112
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.44 E-value=0.0012 Score=67.59 Aligned_cols=143 Identities=12% Similarity=0.091 Sum_probs=77.3
Q ss_pred hhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC----C-ChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 036237 333 NKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK----K-KVGHWTAMIVGLGMHGMATQALDLFNK 407 (689)
Q Consensus 333 ~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~-~~~~~~~li~~~~~~g~~~~A~~l~~~ 407 (689)
+....++..+...-...-..+|..+++.-.+..-+..|+.+|.++.+ + ++...++++.-|+ .++..-|.++|+-
T Consensus 348 ~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeL 426 (656)
T KOG1914|consen 348 KKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFEL 426 (656)
T ss_pred hhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHH
Confidence 33444444444433222334455555555555666666666666554 1 4445556665555 3455666666665
Q ss_pred HHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 036237 408 MCRMGMKPTAI-TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT--IEHYGCLVDILCRTGYLEEAKSTIESM 479 (689)
Q Consensus 408 m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~ 479 (689)
-... -+|.. --...+.-+++.++-..++.+|++.... ++.|+ ...|..+++-=..-|++..+.++-+++
T Consensus 427 GLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s-~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 427 GLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS-VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred HHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 4331 22322 2233445555666666666677666643 45554 466666666666667766666665554
No 113
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.43 E-value=0.00059 Score=80.67 Aligned_cols=312 Identities=10% Similarity=-0.038 Sum_probs=159.6
Q ss_pred HhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC----CC---e---e--hHHHHHHHHHh
Q 036237 133 ARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD----KD---L---V--SWNCLIDGYVK 200 (689)
Q Consensus 133 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~---~---~--~~~~li~~~~~ 200 (689)
...|+++.+..++..+.......+..........+...|++++|...++.... .+ . . ....+...+..
T Consensus 385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (903)
T PRK04841 385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN 464 (903)
T ss_pred HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence 34566666666555442111122233334445555667777777777764421 11 1 1 11122234556
Q ss_pred CCChHHHHHHHhhCCC--C--Cc----chHHHHHHHHHhCCChHHHHHHHhhcCc----CC-----cchHHHHHHHHHhc
Q 036237 201 KGEVEVAMKLFDEMPD--R--DL----FSWTCLVDGFSKCGKVEIAREIFYRMPN----RN-----LVSWNAMINGYMKA 263 (689)
Q Consensus 201 ~g~~~~A~~~~~~m~~--~--d~----~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~-----~~~~~~li~~~~~~ 263 (689)
.|++++|...+++... + +. ...+.+...+...|++++|...+++... .+ ..+...+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 7888888877776533 1 21 2344555566778888888888777653 11 23445566777888
Q ss_pred CCHHHHHHHHHhcCC-------C----ChHHHHHHHHHHHHcCChHHHHHHHHHhccCC--CCcC--hhhHHHHHHHHHc
Q 036237 264 GDVDSACELFDDMEI-------R----DLITWNSMIAGYELNGRFMEALELLETMLIGD--VLPN--DATLVSALSAVAG 328 (689)
Q Consensus 264 g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~--~~t~~~ll~a~~~ 328 (689)
|++++|...+++... + ....+..+...+...|++++|...+.+..... ..+. ...+..+......
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 888888887766432 1 12234455566777799999988888775421 1121 1222333445556
Q ss_pred ccchhhHHHHHHHHHHhCCccc-hhHH-----hHHHhhHHhcCCHHHHHHHHHhcCCCChh-------hHHHHHHHHHHc
Q 036237 329 LAVLNKGRWMHSYIVKNGFVVD-GVLG-----TLLIQMYSKCGSIESALTVFRAISKKKVG-------HWTAMIVGLGMH 395 (689)
Q Consensus 329 ~~~~~~a~~i~~~~~~~g~~~~-~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~li~~~~~~ 395 (689)
.|+.+.|...+..+....-... ...+ ...+..+...|+.+.|.+.+.....+... .+..+..++...
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL 704 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence 6777777776666543211000 0000 01123334456666666665554432110 123344455555
Q ss_pred CCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhH
Q 036237 396 GMATQALDLFNKMCRM----GMKPTA-ITFIGVLNACSHAGLVNDGRRYFNMMI 444 (689)
Q Consensus 396 g~~~~A~~l~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~ 444 (689)
|++++|...+++.... |..++. .+...+..++...|+.++|...+.+..
T Consensus 705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al 758 (903)
T PRK04841 705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEAL 758 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666666655554432 111111 133333344445555555555555444
No 114
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.37 E-value=4.8e-06 Score=73.50 Aligned_cols=107 Identities=7% Similarity=-0.028 Sum_probs=91.7
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 036237 438 RYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVA 515 (689)
Q Consensus 438 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 515 (689)
.+++... .+.|+ .+..+...+...|++++|...|+.. ...| +...|..+..++...|++++|+..++++++++
T Consensus 14 ~~~~~al---~~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLL---SVDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHH---HcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3445544 34455 3556788999999999999999986 3445 67799999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 036237 516 PDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRG 549 (689)
Q Consensus 516 p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~ 549 (689)
|+++..+..++.++...|++++|...++...+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999987643
No 115
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.35 E-value=9.8e-06 Score=70.34 Aligned_cols=118 Identities=10% Similarity=0.064 Sum_probs=96.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 036237 453 IEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYA 530 (689)
Q Consensus 453 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~ 530 (689)
....-.+...+...|++++|.++|+-. ...| +..-|..|...|...|++++|+..|.++..++|++|.++..++.+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 445556677788999999999999886 3445 66789999999999999999999999999999999999999999999
Q ss_pred hcCCcchHHHHHHHHHhCCCccCCcccEEEECCEEEEEeeCCCCCcChHHHHHHHHHHHHHHH
Q 036237 531 AAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLK 593 (689)
Q Consensus 531 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~ 593 (689)
..|+.+.|++-|+...... ..+|+..++..+.+.+++.+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhh
Confidence 9999999999999877532 124555666666666665554
No 116
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.34 E-value=3.6e-05 Score=85.14 Aligned_cols=189 Identities=11% Similarity=0.070 Sum_probs=140.6
Q ss_pred hhHHHHHH-HHHcccchhhH-HHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC------CChhhHHHH
Q 036237 317 ATLVSALS-AVAGLAVLNKG-RWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK------KKVGHWTAM 388 (689)
Q Consensus 317 ~t~~~ll~-a~~~~~~~~~a-~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l 388 (689)
.|...++. +.+..|..+++ .+++.++.+ + ..+.|.+..+.+-+-++.. .++..+-.|
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 92 (694)
T PRK15179 28 PTILDLLEAALAEPGESEEAGRELLQQARQ------------V---LERHAAVHKPAAALPELLDYVRRYPHTELFQVLV 92 (694)
T ss_pred cHHHhHHHHHhcCcccchhHHHHHHHHHHH------------H---HHHhhhhcchHhhHHHHHHHHHhccccHHHHHHH
Confidence 34444444 44566665554 555555432 2 2333444444333333321 357788889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhc
Q 036237 389 IVGLGMHGMATQALDLFNKMCRMGMKPTAI-TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRT 466 (689)
Q Consensus 389 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~ 466 (689)
.....+.|++++|+.+++...+ +.||.. ....+...+.+.+.+++|...+++... ..|+ ......+..++.+.
T Consensus 93 a~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~~a~~l~~~ 167 (694)
T PRK15179 93 ARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILLEAKSWDEI 167 (694)
T ss_pred HHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999998 688866 677788899999999999999999983 4565 67888899999999
Q ss_pred CCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHH
Q 036237 467 GYLEEAKSTIESMP-MRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVL 525 (689)
Q Consensus 467 g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L 525 (689)
|++++|..+|++.- -.| +..+|.++..++...|+.++|...|+++++...+-...|+.+
T Consensus 168 g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~ 228 (694)
T PRK15179 168 GQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRR 228 (694)
T ss_pred cchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHH
Confidence 99999999999973 334 477999999999999999999999999999665544555544
No 117
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.33 E-value=1.1e-05 Score=84.92 Aligned_cols=190 Identities=16% Similarity=0.200 Sum_probs=152.7
Q ss_pred CCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036237 346 GFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN 425 (689)
Q Consensus 346 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 425 (689)
+++|--..-..+.+.+.++|-...|..+|+++ ..|.-.|.+|...|+..+|..+..+-.+ -+||+.-|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 45666667777889999999999999999975 4588889999999999999999988887 4788999999999
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCChHH
Q 036237 426 ACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIES-MPMRP-NFVIWMSLLSGARNHGNKDI 503 (689)
Q Consensus 426 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~ll~~~~~~g~~~~ 503 (689)
......-+++|.++++....+ .-..+.....+.++++++.+.|+. +.+.| -..+|-.+..+..+.++.+.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 888888889999988766532 111222233457888888888875 34444 55688888888888889999
Q ss_pred HHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCCC
Q 036237 504 GEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGF 550 (689)
Q Consensus 504 a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~~ 550 (689)
|.+.|...+.++|++...+++++-+|.+.|+-.+|...+++..+.+.
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~ 584 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY 584 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 99999999999999988999999999999999999888888877663
No 118
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.33 E-value=3.1e-05 Score=72.12 Aligned_cols=135 Identities=13% Similarity=0.079 Sum_probs=108.4
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHH
Q 036237 413 MKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM--PMRPNFVIWMS 490 (689)
Q Consensus 413 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ 490 (689)
..|+......+-.++...|+-+.+..+...... ....|......++....+.|++.+|...|++. ..++|...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 355433335555677777888888877777652 33444556667889999999999999999987 34568889999
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 036237 491 LLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRG 549 (689)
Q Consensus 491 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~ 549 (689)
+..+|.+.|+++.|...|.+++++.|+++..++.|+..|.-.|++++|..++......+
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999988876544
No 119
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.31 E-value=3.6e-05 Score=74.77 Aligned_cols=181 Identities=13% Similarity=0.049 Sum_probs=126.9
Q ss_pred ChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCcc--chhHHhHHHhhHHhcCCHHHHHHHHHhcCCC---Chh---hHH
Q 036237 315 NDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVV--DGVLGTLLIQMYSKCGSIESALTVFRAISKK---KVG---HWT 386 (689)
Q Consensus 315 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~---~~~ 386 (689)
....+......+...|+++.|...++.+.+..... ....+..+...|.+.|++++|...|+++.+. +.. .+.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 34556677778889999999999999998765321 1246677889999999999999999998652 222 466
Q ss_pred HHHHHHHHc--------CCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHH
Q 036237 387 AMIVGLGMH--------GMATQALDLFNKMCRMGMKPTAI-TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYG 457 (689)
Q Consensus 387 ~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 457 (689)
.+..++.+. |++++|++.|+++... .|+.. ....+.... .... ... ....
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~----~~~~------~~~---------~~~~ 170 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD----YLRN------RLA---------GKEL 170 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH----HHHH------HHH---------HHHH
Confidence 666667665 7899999999999874 56643 222111110 0000 000 1123
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 036237 458 CLVDILCRTGYLEEAKSTIESM----PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAP 516 (689)
Q Consensus 458 ~li~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 516 (689)
.+.+.|.+.|++++|...+++. +..| ....|..+..++...|+.++|...++.+....|
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5667788999999999888876 2223 356888899999999999999998887776555
No 120
>PLN02789 farnesyltranstransferase
Probab=98.30 E-value=0.00012 Score=73.51 Aligned_cols=176 Identities=11% Similarity=0.079 Sum_probs=112.7
Q ss_pred CHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCH--HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHH
Q 036237 366 SIESALTVFRAISK---KKVGHWTAMIVGLGMHGMA--TQALDLFNKMCRMGMKP-TAITFIGVLNACSHAGLVNDGRRY 439 (689)
Q Consensus 366 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~--~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~ 439 (689)
.+++++..++++.. ++..+|+.....+.+.|+. ++++.+++++.+. .| |..+|.....++.+.|+++++++.
T Consensus 87 ~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~ 164 (320)
T PLN02789 87 DLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEY 164 (320)
T ss_pred hHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHH
Confidence 35666666665543 3444566555445555543 5667777777763 34 345677777777777778888888
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHHHhc---CCH----HHHHHHHHh-CCCCC-CHHHHHHHHHHHHhc----CChHHHHH
Q 036237 440 FNMMINDYGIEPTIEHYGCLVDILCRT---GYL----EEAKSTIES-MPMRP-NFVIWMSLLSGARNH----GNKDIGEY 506 (689)
Q Consensus 440 ~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~----~~A~~~~~~-~~~~p-~~~~~~~ll~~~~~~----g~~~~a~~ 506 (689)
++++++. -.-+...|+....++.+. |.. +++.++..+ +...| |...|+-+...+... ++..+|..
T Consensus 165 ~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~ 242 (320)
T PLN02789 165 CHQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSS 242 (320)
T ss_pred HHHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHH
Confidence 8877742 122345555555444443 222 455666533 34445 566888888888773 34567888
Q ss_pred HHHHHhhcCCCCchhHHHHHHHHHhcC------------------CcchHHHHHHHH
Q 036237 507 AANNLIKVAPDTIGCYVVLSNIYAAAG------------------QWDKVSEVREMM 545 (689)
Q Consensus 507 ~~~~~~~~~p~~~~~~~~L~~~~~~~g------------------~~~~A~~~~~~m 545 (689)
.+.++++.+|+++.++..|+++|+... ..++|.++++.+
T Consensus 243 ~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 243 VCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred HHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHH
Confidence 888888889999999999999998643 235677777777
No 121
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.28 E-value=8.5e-05 Score=69.42 Aligned_cols=154 Identities=8% Similarity=0.090 Sum_probs=110.5
Q ss_pred HhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 036237 358 IQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGR 437 (689)
Q Consensus 358 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 437 (689)
+-.|...|+++......+.+..+. ..|...++.++++..+++..+.. +.|...|..+...+...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 345677777766554443332221 01222566777887787777642 344567888888888999999999
Q ss_pred HHHHHhHHhcCCCC-ChhHHHHHHHH-HHhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 036237 438 RYFNMMINDYGIEP-TIEHYGCLVDI-LCRTGY--LEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNL 511 (689)
Q Consensus 438 ~~~~~~~~~~~~~p-~~~~~~~li~~-~~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 511 (689)
..|+...+ +.| +...+..+..+ +.+.|+ .++|.+++++. ...| +...+..+...+...|++++|+..++++
T Consensus 94 ~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99998873 445 46777888876 467777 58999999886 3445 6678888999999999999999999999
Q ss_pred hhcCCCCchhHH
Q 036237 512 IKVAPDTIGCYV 523 (689)
Q Consensus 512 ~~~~p~~~~~~~ 523 (689)
+++.|.+..-+.
T Consensus 171 L~l~~~~~~r~~ 182 (198)
T PRK10370 171 LDLNSPRVNRTQ 182 (198)
T ss_pred HhhCCCCccHHH
Confidence 998887765443
No 122
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.27 E-value=5.9e-05 Score=77.65 Aligned_cols=83 Identities=18% Similarity=0.185 Sum_probs=50.0
Q ss_pred HHHhcCCHHHHHHHHHhcCCC---ChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcCh-hhHHHHHHHHHcccchhh
Q 036237 259 GYMKAGDVDSACELFDDMEIR---DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPND-ATLVSALSAVAGLAVLNK 334 (689)
Q Consensus 259 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~ 334 (689)
-+.+.|++.+|.-.|+...++ +...|--|....+.+++-..|+..+++.++. .|+. .....|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhhHHH
Confidence 345667777777777766544 4467777777777777777777777777663 4443 233334444455555455
Q ss_pred HHHHHHHHH
Q 036237 335 GRWMHSYIV 343 (689)
Q Consensus 335 a~~i~~~~~ 343 (689)
|...+..-+
T Consensus 372 Al~~L~~Wi 380 (579)
T KOG1125|consen 372 ALKMLDKWI 380 (579)
T ss_pred HHHHHHHHH
Confidence 554444443
No 123
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.22 E-value=0.00015 Score=80.27 Aligned_cols=196 Identities=13% Similarity=0.076 Sum_probs=140.1
Q ss_pred ChHHHHHHHHHHHHcCChHHHH-HHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHH
Q 036237 280 DLITWNSMIAGYELNGRFMEAL-ELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLI 358 (689)
Q Consensus 280 ~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li 358 (689)
++...+.+=.+...-|..++|- ++..+..+ ++.+.+.......+..-.... -..+..++..+-.|.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~La 93 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDY-VRRYPHTELFQVLVA 93 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHH-HHhccccHHHHHHHH
Confidence 3444555555666677777763 45555432 233332222222222111111 134566788888999
Q ss_pred hhHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHH
Q 036237 359 QMYSKCGSIESALTVFRAISK--K-KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI-TFIGVLNACSHAGLVN 434 (689)
Q Consensus 359 ~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~ 434 (689)
+.....|.+++|..+++...+ | +...+..++..+.+.+++++|+..+++... ..|+.. ....+..++.+.|.++
T Consensus 94 ~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~a~~l~~~g~~~ 171 (694)
T PRK15179 94 RALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLEAKSWDEIGQSE 171 (694)
T ss_pred HHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHhcchH
Confidence 999999999999999999876 4 456788899999999999999999999998 467765 4556667888999999
Q ss_pred HHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHH
Q 036237 435 DGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESMP--MRPNFVIWMSLLS 493 (689)
Q Consensus 435 ~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~ 493 (689)
+|..+|+++.. -.|+ ...+..+...+-..|+.++|...|++.- ..|....|+.++.
T Consensus 172 ~A~~~y~~~~~---~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 172 QADACFERLSR---QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred HHHHHHHHHHh---cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 99999999994 2344 7889999999999999999999999872 2344555555443
No 124
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.22 E-value=0.016 Score=63.33 Aligned_cols=68 Identities=15% Similarity=0.188 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhcCChH---HHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCC
Q 036237 487 IWMSLLSGARNHGNKD---IGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDP 554 (689)
Q Consensus 487 ~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 554 (689)
+.+.|+..|.+.++.. +|+-+++..+...|.|..+-..|+.+|.-.|-+..|.++++.+--+.|..+.
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DT 508 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDT 508 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhcc
Confidence 4567778888887654 6677777778888989888889999999999999999999988766666554
No 125
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.20 E-value=0.00053 Score=69.64 Aligned_cols=177 Identities=16% Similarity=0.073 Sum_probs=122.2
Q ss_pred CCHHHHHHHHHhcCC------CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 036237 365 GSIESALTVFRAISK------KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRR 438 (689)
Q Consensus 365 g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 438 (689)
.++.+++..-+.++. ++...+...+.+.........+-.++. +... -.-...-|..-+ .....|.+++|+.
T Consensus 251 ~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~-~~~~-~~~~aa~YG~A~-~~~~~~~~d~A~~ 327 (484)
T COG4783 251 ERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLA-KRSK-RGGLAAQYGRAL-QTYLAGQYDEALK 327 (484)
T ss_pred hHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHH-HHhC-ccchHHHHHHHH-HHHHhcccchHHH
Confidence 456666666666664 234445555554433332222322222 2221 011122333333 4456788999999
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 036237 439 YFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRPN-FVIWMSLLSGARNHGNKDIGEYAANNLIKVAP 516 (689)
Q Consensus 439 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 516 (689)
.++.++. ..+-|+.......+.+.+.++.++|.+.++++ ...|+ ...+.++..++.+.|++.+|+..++....-+|
T Consensus 328 ~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p 405 (484)
T COG4783 328 LLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP 405 (484)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence 9999884 33334666677789999999999999999887 45576 66888889999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhcCCcchHHHHHHHHH
Q 036237 517 DTIGCYVVLSNIYAAAGQWDKVSEVREMMK 546 (689)
Q Consensus 517 ~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~ 546 (689)
+++..|..|+.+|...|+..++...+.++.
T Consensus 406 ~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 406 EDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred CCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 999999999999999999888888777654
No 126
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.14 E-value=9.1e-05 Score=78.25 Aligned_cols=211 Identities=13% Similarity=0.137 Sum_probs=159.6
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHccc
Q 036237 251 VSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLA 330 (689)
Q Consensus 251 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 330 (689)
..-..+...+.++|-...|..+|+++ ..|...|.+|...|+..+|..+..+-.+ -+||..-|..+....-...
T Consensus 399 q~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChH
Confidence 34456788899999999999999875 4688889999999999999998888877 3688888888777776666
Q ss_pred chhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 036237 331 VLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKK---KVGHWTAMIVGLGMHGMATQALDLFNK 407 (689)
Q Consensus 331 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~ 407 (689)
-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+- -..+|-....+..+.+++..|.+.|..
T Consensus 472 ~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 472 LYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred HHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 677777777664332 1122222233468888888888865542 456888888888888888888888888
Q ss_pred HHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 036237 408 MCRMGMKPTAI-TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM 479 (689)
Q Consensus 408 m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 479 (689)
-.. ..||.. .|+.+-.++.+.++-.+|...+.+..+ +. .-+...|...+-...+.|.+++|++.+.++
T Consensus 545 cvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 545 CVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred Hhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 776 577755 788888888888888888888888874 34 444556666777778888888888888776
No 127
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.13 E-value=0.00026 Score=79.88 Aligned_cols=215 Identities=20% Similarity=0.159 Sum_probs=146.4
Q ss_pred chHHHHHHHHHhCCChHHHHHHHhhcCcC--------CcchHHHHHHHHHhcCCHHHHHHHHHhcCCC-C-hHHHHHHHH
Q 036237 220 FSWTCLVDGFSKCGKVEIAREIFYRMPNR--------NLVSWNAMINGYMKAGDVDSACELFDDMEIR-D-LITWNSMIA 289 (689)
Q Consensus 220 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~li~ 289 (689)
..|-..|....+.++.++|.++.++++.. -..+|.+++++-..-|.-+...++|++..+- | -..|..|..
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~ 1538 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLG 1538 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 45666666666666666666666666531 1456666666666666666677777776543 2 345667777
Q ss_pred HHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCc-cchhHHhHHHhhHHhcCCHH
Q 036237 290 GYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFV-VDGVLGTLLIQMYSKCGSIE 368 (689)
Q Consensus 290 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~ 368 (689)
.|.+.+.+++|.++|+.|.+. +.-....|...+..+.+...-+.|..++.++++.-.. ....+..-.+++-.++|+.+
T Consensus 1539 iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDae 1617 (1710)
T KOG1070|consen 1539 IYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAE 1617 (1710)
T ss_pred HHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCch
Confidence 777777777777777777653 3345556666666677777767777777776664322 24556666777788899999
Q ss_pred HHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCcHHH
Q 036237 369 SALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI--TFIGVLNACSHAGLVND 435 (689)
Q Consensus 369 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~ 435 (689)
.++.+|+.... +....|+..|..-.++|+.+.+..+|++....++.|-.. .|.-.|..-.+.|+-..
T Consensus 1618 RGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1618 RGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred hhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 99999998765 356789999999999999999999999999988877643 45555544444454433
No 128
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.12 E-value=0.00021 Score=66.78 Aligned_cols=117 Identities=12% Similarity=0.055 Sum_probs=61.2
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 036237 423 VLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGN 500 (689)
Q Consensus 423 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 500 (689)
.+......|++.+|...+.+... .-++|...|+.+.-.|.+.|++++|..-|.+. .+.| ++...+.|...+.-.|+
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd 183 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD 183 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC
Confidence 44444555555555555555542 33344555555555555555555555555443 2222 33445555555555555
Q ss_pred hHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHH
Q 036237 501 KDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEV 541 (689)
Q Consensus 501 ~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~ 541 (689)
.+.|+.++.......+.++.+-..|+.+....|++++|..+
T Consensus 184 ~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 184 LEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 55555555555555555555555555555555555555544
No 129
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.12 E-value=3.6e-05 Score=67.44 Aligned_cols=100 Identities=16% Similarity=0.181 Sum_probs=77.0
Q ss_pred CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHH
Q 036237 449 IEPT-IEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVL 525 (689)
Q Consensus 449 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L 525 (689)
..|+ ......+...+...|++++|.+.++.. ...| +...|..+...+...|+++.|...++++++.+|+++..+..+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 3443 455666777777888888888887775 2233 566777888888888888888888888888888888888888
Q ss_pred HHHHHhcCCcchHHHHHHHHHhC
Q 036237 526 SNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 526 ~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
+.+|...|++++|...++...+.
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888888877663
No 130
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.08 E-value=6.6e-06 Score=52.54 Aligned_cols=35 Identities=31% Similarity=0.573 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 036237 383 GHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA 417 (689)
Q Consensus 383 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 417 (689)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999973
No 131
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.08 E-value=0.00066 Score=76.10 Aligned_cols=44 Identities=11% Similarity=0.073 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 036237 487 IWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYA 530 (689)
Q Consensus 487 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~ 530 (689)
++--+-..|...++++.++.+++.+++.+|.|..+...|+..|.
T Consensus 225 ~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 225 LLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 33334444555555666666666666666665555555555554
No 132
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.07 E-value=6.1e-06 Score=52.69 Aligned_cols=35 Identities=43% Similarity=0.556 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCc
Q 036237 88 VLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDN 122 (689)
Q Consensus 88 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 122 (689)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999998874
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.03 E-value=0.00058 Score=69.35 Aligned_cols=147 Identities=14% Similarity=0.110 Sum_probs=118.5
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHH
Q 036237 381 KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGV-LNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGC 458 (689)
Q Consensus 381 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 458 (689)
....+......+...|++++|+..++.+.. -.||...|..+ ...+...++.++|.+.++.+. ...|+ ....-.
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal---~l~P~~~~l~~~ 379 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKAL---ALDPNSPLLQLN 379 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH---hcCCCccHHHHH
Confidence 344555555567778999999999999887 46776666555 467889999999999999998 46677 566778
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcc
Q 036237 459 LVDILCRTGYLEEAKSTIESMP--MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWD 536 (689)
Q Consensus 459 li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~ 536 (689)
+.++|.+.|++.+|..+++... .+-|+..|..|..+|...|+..++.. ..+..|+-.|+|+
T Consensus 380 ~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~-----------------A~AE~~~~~G~~~ 442 (484)
T COG4783 380 LAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL-----------------ARAEGYALAGRLE 442 (484)
T ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH-----------------HHHHHHHhCCCHH
Confidence 8899999999999999999873 44588899999999999998776654 4556788899999
Q ss_pred hHHHHHHHHHhCC
Q 036237 537 KVSEVREMMKKRG 549 (689)
Q Consensus 537 ~A~~~~~~m~~~~ 549 (689)
+|........++.
T Consensus 443 ~A~~~l~~A~~~~ 455 (484)
T COG4783 443 QAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHHhc
Confidence 9999998887654
No 134
>PLN02789 farnesyltranstransferase
Probab=97.93 E-value=0.0014 Score=65.97 Aligned_cols=182 Identities=13% Similarity=0.087 Sum_probs=131.1
Q ss_pred HHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCc--H
Q 036237 361 YSKCGSIESALTVFRAISKK---KVGHWTAMIVGLGMHG-MATQALDLFNKMCRMGMKPT-AITFIGVLNACSHAGL--V 433 (689)
Q Consensus 361 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~--~ 433 (689)
+...+..++|....+.+... +..+|+.....+...| ++++++..++++.+. .|+ ..+|..-...+.+.|. .
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcCchhh
Confidence 34456777888888877653 4456777667777777 579999999999985 344 3356655445555565 3
Q ss_pred HHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhc---CCh----HH
Q 036237 434 NDGRRYFNMMINDYGIEP-TIEHYGCLVDILCRTGYLEEAKSTIESM-PMR-PNFVIWMSLLSGARNH---GNK----DI 503 (689)
Q Consensus 434 ~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~---g~~----~~ 503 (689)
+++..+++.+.+ ..| +...|+....++.+.|++++|++.++++ ... -|...|+.....+.+. |.. +.
T Consensus 125 ~~el~~~~kal~---~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 125 NKELEFTRKILS---LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred HHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHH
Confidence 678888888883 344 4788888889999999999999999987 333 3667888777666554 222 46
Q ss_pred HHHHHHHHhhcCCCCchhHHHHHHHHHhc----CCcchHHHHHHHHHh
Q 036237 504 GEYAANNLIKVAPDTIGCYVVLSNIYAAA----GQWDKVSEVREMMKK 547 (689)
Q Consensus 504 a~~~~~~~~~~~p~~~~~~~~L~~~~~~~----g~~~~A~~~~~~m~~ 547 (689)
++....++++++|+|..++.-+..+|... ++..+|.+...+..+
T Consensus 202 el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 202 ELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 77778899999999999999999999873 344556666655443
No 135
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=0.0077 Score=56.53 Aligned_cols=147 Identities=11% Similarity=0.019 Sum_probs=89.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHH----HHHHHHHhc
Q 036237 391 GLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYG----CLVDILCRT 466 (689)
Q Consensus 391 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~----~li~~~~~~ 466 (689)
.|+..|++++|++...... ..+.... =...+.+..+++-|.+.++.|.. +. +..+.+ +.|....-.
T Consensus 117 i~~~~~~~deAl~~~~~~~----~lE~~Al--~VqI~lk~~r~d~A~~~lk~mq~---id-ed~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 117 IYMHDGDFDEALKALHLGE----NLEAAAL--NVQILLKMHRFDLAEKELKKMQQ---ID-EDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HhhcCCChHHHHHHHhccc----hHHHHHH--HHHHHHHHHHHHHHHHHHHHHHc---cc-hHHHHHHHHHHHHHHhccc
Confidence 4555666666666655411 1111111 12223345566666666666652 22 222333 333333444
Q ss_pred CCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHH-HHHH
Q 036237 467 GYLEEAKSTIESMP--MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVS-EVRE 543 (689)
Q Consensus 467 g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~-~~~~ 543 (689)
+.+.+|.-+|++|. ..|+..+.+-...++...|++++|+.+++.++..+|++|.+...++-.--..|+-.++. +.+.
T Consensus 187 ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred hhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 56777788887773 45777777888888888888888888888888888888888888877777777765553 4455
Q ss_pred HHHh
Q 036237 544 MMKK 547 (689)
Q Consensus 544 ~m~~ 547 (689)
+++.
T Consensus 267 QLk~ 270 (299)
T KOG3081|consen 267 QLKL 270 (299)
T ss_pred HHHh
Confidence 5554
No 136
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.93 E-value=1.5e-05 Score=50.47 Aligned_cols=33 Identities=24% Similarity=0.370 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCC
Q 036237 88 VLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLP 120 (689)
Q Consensus 88 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p 120 (689)
.+||.+|.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
No 137
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.92 E-value=0.00031 Score=72.01 Aligned_cols=126 Identities=13% Similarity=0.126 Sum_probs=103.3
Q ss_pred HHhHHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccC
Q 036237 353 LGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKP-TAITFIGVLNACSHAG 431 (689)
Q Consensus 353 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g 431 (689)
...+|+..+...++++.|..+|+++.+.++..+..++..+...++-.+|++++++.... .| +...+..-...|.+.+
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcC
Confidence 34456666677889999999999999888888888889998899999999999998864 34 4445555556788999
Q ss_pred cHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 036237 432 LVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESMPMRP 483 (689)
Q Consensus 432 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 483 (689)
+.+.|+.+.+++. ...|+ ..+|..|+..|.+.|++++|+..++.+|.-|
T Consensus 249 ~~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 249 KYELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CHHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 9999999999998 45666 5799999999999999999999999997543
No 138
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.92 E-value=0.0002 Score=73.39 Aligned_cols=122 Identities=10% Similarity=0.075 Sum_probs=96.0
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 036237 420 FIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARN 497 (689)
Q Consensus 420 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 497 (689)
..+|+..+...++++.|..+|+++.+. .|+ ....|+..+...++-.+|.+++.+. ...| |...+......|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 344566666778888888888888742 354 3445777777778888888888775 2233 56666666777889
Q ss_pred cCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHH
Q 036237 498 HGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMK 546 (689)
Q Consensus 498 ~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~ 546 (689)
.++++.|..++++++++.|++..++..|+.+|.+.|++++|.-.+..+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999888774
No 139
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.90 E-value=2.1e-05 Score=49.76 Aligned_cols=33 Identities=30% Similarity=0.521 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 036237 383 GHWTAMIVGLGMHGMATQALDLFNKMCRMGMKP 415 (689)
Q Consensus 383 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 415 (689)
.+||.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
No 140
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.88 E-value=0.00041 Score=60.62 Aligned_cols=113 Identities=9% Similarity=0.036 Sum_probs=83.8
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 036237 404 LFNKMCRMGMKPTA-ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PM 481 (689)
Q Consensus 404 l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 481 (689)
.|++... ..|+. .....+...+...|++++|...|+.+.. ..+.+...+..+...|.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA--YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444 44543 3455566677788888888888888774 22335677888888888888888888888876 33
Q ss_pred CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCch
Q 036237 482 RP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIG 520 (689)
Q Consensus 482 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 520 (689)
.| +...|..+...+...|+.+.|...+++++++.|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 34 5677888888899999999999999999999997754
No 141
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.82 E-value=0.0041 Score=57.84 Aligned_cols=165 Identities=13% Similarity=0.153 Sum_probs=115.4
Q ss_pred HHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHH---HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 036237 356 LLIQMYSKCGSIESALTVFRAISKKKVGHWTAM---IVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGL 432 (689)
Q Consensus 356 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 432 (689)
.+.-+...+|+.+.|...++++..+-+.++... ..-+-..|++++|+++++...+.. +-|.+++..-+...-..|+
T Consensus 57 qV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK 135 (289)
T KOG3060|consen 57 QVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGK 135 (289)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCC
Confidence 344445566777777777777655333332222 122445788999999999988765 4456677776666667777
Q ss_pred HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhc---CChHHHHHH
Q 036237 433 VNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP-MRP-NFVIWMSLLSGARNH---GNKDIGEYA 507 (689)
Q Consensus 433 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~---g~~~~a~~~ 507 (689)
--+|++-+....+ .+.-|.+.|.-|.++|...|++++|.-.++++- +.| ++..+..+...+... .+.+.+.+.
T Consensus 136 ~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arky 213 (289)
T KOG3060|consen 136 NLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKY 213 (289)
T ss_pred cHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 7788888877775 567788899999999999999999998888872 345 555666666655444 377888899
Q ss_pred HHHHhhcCCCCchhHH
Q 036237 508 ANNLIKVAPDTIGCYV 523 (689)
Q Consensus 508 ~~~~~~~~p~~~~~~~ 523 (689)
|.+++++.|.+.....
T Consensus 214 y~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 214 YERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHHhChHhHHHHH
Confidence 9999999886544433
No 142
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.79 E-value=0.0025 Score=59.62 Aligned_cols=153 Identities=12% Similarity=0.073 Sum_probs=112.8
Q ss_pred HHHHHcCCHHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 036237 390 VGLGMHGMATQALD-LFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGY 468 (689)
Q Consensus 390 ~~~~~~g~~~~A~~-l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 468 (689)
..+..-++.++-+. +.+.+.......|......-...|.+.|++++|.+..... -+.+....=+..+.|..+
T Consensus 80 ~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-------~~lE~~Al~VqI~lk~~r 152 (299)
T KOG3081|consen 80 EYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-------ENLEAAALNVQILLKMHR 152 (299)
T ss_pred HHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-------chHHHHHHHHHHHHHHHH
Confidence 33333444444333 4444554444444444444456799999999999887652 334555555677888999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHH
Q 036237 469 LEEAKSTIESMPMRPNFVIWMSLLSGARNH----GNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREM 544 (689)
Q Consensus 469 ~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~ 544 (689)
++-|...+++|..-.+..|.+.|..++.+. +.+..|.-+|+++-+.-|.++.+.+..+.++...|+|++|..+++.
T Consensus 153 ~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~e 232 (299)
T KOG3081|consen 153 FDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEE 232 (299)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHH
Confidence 999999999996445677788788877543 4688999999999998888999999999999999999999999999
Q ss_pred HHhCC
Q 036237 545 MKKRG 549 (689)
Q Consensus 545 m~~~~ 549 (689)
..++.
T Consensus 233 aL~kd 237 (299)
T KOG3081|consen 233 ALDKD 237 (299)
T ss_pred HHhcc
Confidence 88654
No 143
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.72 E-value=8.9e-05 Score=56.04 Aligned_cols=64 Identities=20% Similarity=0.229 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcC-CcchHHHHHHHHHh
Q 036237 484 NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAG-QWDKVSEVREMMKK 547 (689)
Q Consensus 484 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g-~~~~A~~~~~~m~~ 547 (689)
++.+|..+...+...|+++.|+..|+++++++|+++.++..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999 79999999988764
No 144
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.71 E-value=0.00032 Score=56.36 Aligned_cols=92 Identities=18% Similarity=0.233 Sum_probs=71.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcC
Q 036237 456 YGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAG 533 (689)
Q Consensus 456 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g 533 (689)
+..+...+...|++++|...+++. ...| +...+..+...+...|+++.|...+++.++..|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455667777788888888888775 2333 34567777778888888888888888888888888778888888888889
Q ss_pred CcchHHHHHHHHHh
Q 036237 534 QWDKVSEVREMMKK 547 (689)
Q Consensus 534 ~~~~A~~~~~~m~~ 547 (689)
++++|...++...+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 98888888877654
No 145
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.70 E-value=0.0041 Score=57.81 Aligned_cols=161 Identities=13% Similarity=0.137 Sum_probs=124.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 036237 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGV-LNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDIL 463 (689)
Q Consensus 385 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 463 (689)
|..++-+....|+.+-|...++++... + |...-...+ ..-+...|.+++|.++++.+.++ -+.|..+|.-=+-+.
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAil 130 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHHH
Confidence 444556667789999999999998875 2 554322221 12245578999999999999964 244567777777777
Q ss_pred HhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcC---CcchH
Q 036237 464 CRTGYLEEAKSTIESM--PMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAG---QWDKV 538 (689)
Q Consensus 464 ~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g---~~~~A 538 (689)
-..|+--+|++-+.+. .+..|...|.-|...|...|+++.|...+++++-+.|.++..+..|++.+.-.| +.+-|
T Consensus 131 ka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 7788877888777665 355699999999999999999999999999999999999999999999987665 45667
Q ss_pred HHHHHHHHhCC
Q 036237 539 SEVREMMKKRG 549 (689)
Q Consensus 539 ~~~~~~m~~~~ 549 (689)
++++.+..+..
T Consensus 211 rkyy~~alkl~ 221 (289)
T KOG3060|consen 211 RKYYERALKLN 221 (289)
T ss_pred HHHHHHHHHhC
Confidence 77887776644
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.69 E-value=0.0012 Score=58.51 Aligned_cols=121 Identities=16% Similarity=0.171 Sum_probs=50.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hhHHHH
Q 036237 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA----ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT--IEHYGC 458 (689)
Q Consensus 385 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~ 458 (689)
|..++..+. .++...+...++.+... .|+. .....+...+...|++++|...|+.+... ...|. ......
T Consensus 15 y~~~~~~~~-~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 15 YEQALQALQ-AGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHH-CCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 444444442 55555555555555543 1221 12222334445555555555555555532 11111 112223
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHH
Q 036237 459 LVDILCRTGYLEEAKSTIESMPMR-PNFVIWMSLLSGARNHGNKDIGEYAAN 509 (689)
Q Consensus 459 li~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~ 509 (689)
|...+...|++++|+..++..+.. .....+..+...+...|+.++|+..|+
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 444445555555555555443211 122233333333444444444444443
No 147
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.68 E-value=0.01 Score=66.95 Aligned_cols=79 Identities=16% Similarity=0.093 Sum_probs=40.5
Q ss_pred HHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCH
Q 036237 319 LVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMA 398 (689)
Q Consensus 319 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 398 (689)
+..+..+|.+.|..+++..+++.+++.. +.|+.+.|-+...|+.. ++++|.+++.+.. ..|...+++
T Consensus 119 l~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV-----------~~~i~~kq~ 185 (906)
T PRK14720 119 LRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAI-----------YRFIKKKQY 185 (906)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH-----------HHHHhhhcc
Confidence 3334444444444444444444444444 34455555555555555 6666665554432 224445566
Q ss_pred HHHHHHHHHHHH
Q 036237 399 TQALDLFNKMCR 410 (689)
Q Consensus 399 ~~A~~l~~~m~~ 410 (689)
.++.++|.++..
T Consensus 186 ~~~~e~W~k~~~ 197 (906)
T PRK14720 186 VGIEEIWSKLVH 197 (906)
T ss_pred hHHHHHHHHHHh
Confidence 666666666655
No 148
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.65 E-value=0.0027 Score=56.21 Aligned_cols=114 Identities=18% Similarity=0.172 Sum_probs=58.7
Q ss_pred cCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCChHH
Q 036237 430 AGLVNDGRRYFNMMINDYGIEP-TIEHYGCLVDILCRTGYLEEAKSTIESMP-MRPNF----VIWMSLLSGARNHGNKDI 503 (689)
Q Consensus 430 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~ll~~~~~~g~~~~ 503 (689)
.++...+...++.+.++++-.| .....-.+...+...|++++|...|+... ..||. .....|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4555556556666654322221 12333345566666666666666666542 11222 233344555556666666
Q ss_pred HHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHH
Q 036237 504 GEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREM 544 (689)
Q Consensus 504 a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~ 544 (689)
|+..++.. .-.+-.+..+..++++|.+.|++++|...|+.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666442 22222344555666666666666666666553
No 149
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.64 E-value=6.5e-05 Score=46.30 Aligned_cols=31 Identities=26% Similarity=0.494 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 036237 383 GHWTAMIVGLGMHGMATQALDLFNKMCRMGM 413 (689)
Q Consensus 383 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 413 (689)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688888888888888888888888887764
No 150
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.64 E-value=7.2e-05 Score=59.14 Aligned_cols=77 Identities=17% Similarity=0.207 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHhCC-CCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHH
Q 036237 467 GYLEEAKSTIESMP-MRP---NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVR 542 (689)
Q Consensus 467 g~~~~A~~~~~~~~-~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~ 542 (689)
|++++|+.+++++- ..| +...|..+..++.+.|+++.|..++++ .+.+|.++.....++.+|.+.|++++|.+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 45555555555541 112 344555566667777777777777776 5566666666667777788888888887777
Q ss_pred HH
Q 036237 543 EM 544 (689)
Q Consensus 543 ~~ 544 (689)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 64
No 151
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.63 E-value=6.3e-05 Score=46.37 Aligned_cols=31 Identities=35% Similarity=0.451 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHhHhCCC
Q 036237 88 VLYNLLIKCYVFNQRSHEALTLFCDLLDRFL 118 (689)
Q Consensus 88 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 118 (689)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887764
No 152
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.62 E-value=0.083 Score=53.11 Aligned_cols=106 Identities=15% Similarity=0.160 Sum_probs=70.4
Q ss_pred HHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH
Q 036237 357 LIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDG 436 (689)
Q Consensus 357 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 436 (689)
-+.-+...|+...|.++-.+..-|+-.-|-..+.+|+..++|++-.++... +-.++-|...+.+|...|...+|
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA 256 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEA 256 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHH
Confidence 344455667777777777777777777777778888888877766554321 12336677777777777777777
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 036237 437 RRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM 479 (689)
Q Consensus 437 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 479 (689)
..+...+. +..-+++|.++|++.+|.+.--+.
T Consensus 257 ~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 257 SKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 77665522 244567777777777776665544
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.61 E-value=0.0012 Score=56.03 Aligned_cols=98 Identities=15% Similarity=0.141 Sum_probs=48.3
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHH
Q 036237 423 VLNACSHAGLVNDGRRYFNMMINDYGIEP-TIEHYGCLVDILCRTGYLEEAKSTIESMP-MRPN----FVIWMSLLSGAR 496 (689)
Q Consensus 423 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~ll~~~~ 496 (689)
+...+...|++++|...|+.+...+.-.| ....+..+...+.+.|++++|...++.+. ..|+ ..++..+...+.
T Consensus 8 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 87 (119)
T TIGR02795 8 AALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQ 87 (119)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHH
Confidence 33444444555555555555543211101 02233445555555555555555555431 1122 334555555666
Q ss_pred hcCChHHHHHHHHHHhhcCCCCch
Q 036237 497 NHGNKDIGEYAANNLIKVAPDTIG 520 (689)
Q Consensus 497 ~~g~~~~a~~~~~~~~~~~p~~~~ 520 (689)
..|+.+.|...++++++..|+++.
T Consensus 88 ~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 88 ELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HhCChHHHHHHHHHHHHHCcCChh
Confidence 666666666666666666666543
No 154
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.60 E-value=0.00091 Score=68.89 Aligned_cols=98 Identities=11% Similarity=0.104 Sum_probs=59.8
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh
Q 036237 425 NACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNK 501 (689)
Q Consensus 425 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~ 501 (689)
..+...|++++|+..|+.++. ..|+ ...|..+..+|.+.|++++|+..++++ ...| +...|..+..+|...|++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 444556677777777776663 2333 455666666666666666666666665 2333 444566666666666666
Q ss_pred HHHHHHHHHHhhcCCCCchhHHHH
Q 036237 502 DIGEYAANNLIKVAPDTIGCYVVL 525 (689)
Q Consensus 502 ~~a~~~~~~~~~~~p~~~~~~~~L 525 (689)
+.|+..++++++++|+++.....+
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHH
Confidence 666666666666666665554444
No 155
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.60 E-value=0.0012 Score=63.14 Aligned_cols=102 Identities=16% Similarity=0.130 Sum_probs=74.7
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChHH
Q 036237 427 CSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESM-PMRPNF-VIWMSLLSGARNHGNKDI 503 (689)
Q Consensus 427 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~ 503 (689)
..+.+++.+|+..|...+ .+.|+ ...|..=..+|.+.|.++.|.+-.+.. .+.|.. .+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 456677888888888777 45555 455556677788888888887776664 455654 488899999999999999
Q ss_pred HHHHHHHHhhcCCCCchhHHHHHHHHHh
Q 036237 504 GEYAANNLIKVAPDTIGCYVVLSNIYAA 531 (689)
Q Consensus 504 a~~~~~~~~~~~p~~~~~~~~L~~~~~~ 531 (689)
|++.|+++++++|++...-..|-.+=-+
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~Ae~~ 195 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIAEQK 195 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHHHH
Confidence 9999999999999887555555444333
No 156
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.57 E-value=0.0011 Score=56.33 Aligned_cols=96 Identities=16% Similarity=0.092 Sum_probs=81.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC---chhHHHH
Q 036237 454 EHYGCLVDILCRTGYLEEAKSTIESMP-MRPN----FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDT---IGCYVVL 525 (689)
Q Consensus 454 ~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~L 525 (689)
.++..++..+.+.|++++|.+.+.++. ..|+ ...+..+...+...|+++.|...++.++...|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 456678888999999999999998872 2333 3467778889999999999999999999988875 5678899
Q ss_pred HHHHHhcCCcchHHHHHHHHHhCC
Q 036237 526 SNIYAAAGQWDKVSEVREMMKKRG 549 (689)
Q Consensus 526 ~~~~~~~g~~~~A~~~~~~m~~~~ 549 (689)
+.++.+.|++++|...++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999998754
No 157
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.55 E-value=0.0002 Score=53.27 Aligned_cols=57 Identities=21% Similarity=0.267 Sum_probs=45.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 491 LLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 491 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
+...+...|+++.|+..++++++..|+++.++..++.++...|++++|..+++++.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455677788888888888888888888888888888888888888888888888765
No 158
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.0019 Score=64.03 Aligned_cols=265 Identities=12% Similarity=0.020 Sum_probs=164.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcC-hhhHHHHHHHHHcccc
Q 036237 256 MINGYMKAGDVDSACELFDDMEI---RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPN-DATLVSALSAVAGLAV 331 (689)
Q Consensus 256 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~ 331 (689)
..+.+-+..++.+|+..+....+ .+..-|..-...+...|++++|+--.++-.+. +|. ..+....-..+...++
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSD 132 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHH
Confidence 34556666777777776665442 34555666667777777777777666555442 222 1233333444444444
Q ss_pred hhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC-----CChhhHHHH-HHHHHHcCCHHHHHHHH
Q 036237 332 LNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK-----KKVGHWTAM-IVGLGMHGMATQALDLF 405 (689)
Q Consensus 332 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l-i~~~~~~g~~~~A~~l~ 405 (689)
..+|.+.+.. ...+ ....|...++.... |...+|..+ ..++...|++++|...-
T Consensus 133 ~i~A~~~~~~---------~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea 192 (486)
T KOG0550|consen 133 LIEAEEKLKS---------KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEA 192 (486)
T ss_pred HHHHHHHhhh---------hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHH
Confidence 4444444430 0000 11111112222111 222344444 34567788888888776
Q ss_pred HHHHHCCCCCCHHHHHHHH--HHHhccCcHHHHHHHHHHhHHhcCCCCChhHHH-------------HHHHHHHhcCCHH
Q 036237 406 NKMCRMGMKPTAITFIGVL--NACSHAGLVNDGRRYFNMMINDYGIEPTIEHYG-------------CLVDILCRTGYLE 470 (689)
Q Consensus 406 ~~m~~~g~~p~~~t~~~ll--~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-------------~li~~~~~~g~~~ 470 (689)
-...+. .++. .+..++ .++-..++.+.|...|++.+ .+.|+-..-. .=.....+.|++.
T Consensus 193 ~~ilkl--d~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~ 266 (486)
T KOG0550|consen 193 IDILKL--DATN-AEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYR 266 (486)
T ss_pred HHHHhc--ccch-hHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchh
Confidence 665542 2221 122222 23445678888888888877 4556532211 1123457889999
Q ss_pred HHHHHHHhC-C-----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHH
Q 036237 471 EAKSTIESM-P-----MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREM 544 (689)
Q Consensus 471 ~A~~~~~~~-~-----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~ 544 (689)
+|.+.+.+. . .+|+...|........+.|+.++|+...+++++++|.-...|..-++++...++|++|.+-++.
T Consensus 267 ~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~ 346 (486)
T KOG0550|consen 267 KAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEK 346 (486)
T ss_pred HHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999886 3 4456677888888888999999999999999999999889999999999999999999999988
Q ss_pred HHhC
Q 036237 545 MKKR 548 (689)
Q Consensus 545 m~~~ 548 (689)
..+.
T Consensus 347 a~q~ 350 (486)
T KOG0550|consen 347 AMQL 350 (486)
T ss_pred HHhh
Confidence 7653
No 159
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.54 E-value=0.22 Score=54.91 Aligned_cols=188 Identities=12% Similarity=0.121 Sum_probs=115.6
Q ss_pred CCCHHHHHHHHhcccC--CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHH
Q 036237 68 INNLHYARSIFDRILQ--HPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIH 145 (689)
Q Consensus 68 ~g~~~~A~~~f~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 145 (689)
.|+.++|..+++.... ..|..|...+-..|.+.++.++|..+|++..+. .|+..-...+..++.+.+++.+-.++-
T Consensus 56 ~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa 133 (932)
T KOG2053|consen 56 LGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAA 133 (932)
T ss_pred hcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888877643 346667888888888999999999999988764 577777777788888888776655555
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCC----------hHHHHHHHhhCCCCC--eeh---HHHHHHHHHhCCChHHHHHH
Q 036237 146 GLVFKLGFGFDKFVLSSLVSMYAKFGE----------IDLGRRVFDAMDDKD--LVS---WNCLIDGYVKKGEVEVAMKL 210 (689)
Q Consensus 146 ~~~~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~--~~~---~~~li~~~~~~g~~~~A~~~ 210 (689)
-++-+ .++-+.+.+=++++.+...-. +.-|.+.++.+.+.+ ..+ .-.-...+-..|++++|+++
T Consensus 134 ~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~ 212 (932)
T KOG2053|consen 134 LQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEF 212 (932)
T ss_pred HHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHH
Confidence 44444 335555655555665554321 234555666555433 111 11112344456778888887
Q ss_pred Hhh-CC----CCCcchHHHHHHHHHhCCChHHHHHHHhhcCcCCcchHHHHHH
Q 036237 211 FDE-MP----DRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMIN 258 (689)
Q Consensus 211 ~~~-m~----~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 258 (689)
+.. .. ..+...-+--+..+...+++.+-.++-.++...+..-|...++
T Consensus 213 l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Ddy~~~~~ 265 (932)
T KOG2053|consen 213 LAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDDYKIYTD 265 (932)
T ss_pred HHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcchHHHHH
Confidence 732 21 2233444455666777777777666666665543332444333
No 160
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.54 E-value=0.0039 Score=67.17 Aligned_cols=61 Identities=21% Similarity=0.181 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHH
Q 036237 485 FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMK 546 (689)
Q Consensus 485 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~ 546 (689)
+..|.++.-.....|++++|...++++++++| +...|..++.+|...|+.++|.+.+++..
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444444555555555555555555 34455555555555555555555555443
No 161
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.42 E-value=0.25 Score=52.70 Aligned_cols=117 Identities=15% Similarity=0.072 Sum_probs=56.5
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhhCCC-CCeehHHHH---H-------HHHHhCCChHHHHHHHhhCCCCCcchH
Q 036237 154 GFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDD-KDLVSWNCL---I-------DGYVKKGEVEVAMKLFDEMPDRDLFSW 222 (689)
Q Consensus 154 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~l---i-------~~~~~~g~~~~A~~~~~~m~~~d~~~~ 222 (689)
.|.+..|..|.....+.-+++.|+..|-+... +.+..-..| . ..-+--|.+++|.++|-+|.++|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDL--- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDL--- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhh---
Confidence 46777787777777666677777777665542 111100000 0 011112666666666666655543
Q ss_pred HHHHHHHHhCCChHHHHHHHhhcCcCC-----cchHHHHHHHHHhcCCHHHHHHHHHh
Q 036237 223 TCLVDGFSKCGKVEIAREIFYRMPNRN-----LVSWNAMINGYMKAGDVDSACELFDD 275 (689)
Q Consensus 223 ~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~ 275 (689)
.+..+.+.|++-...++++.--..+ ...++.+.+.+.....+++|.+.+..
T Consensus 766 --Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 766 --AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred --hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2333444455554444444322110 23444444444444444444444433
No 162
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.41 E-value=0.0016 Score=59.56 Aligned_cols=81 Identities=15% Similarity=0.067 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 036237 454 EHYGCLVDILCRTGYLEEAKSTIESM-PMRPN----FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNI 528 (689)
Q Consensus 454 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 528 (689)
..+..+...|.+.|++++|...+++. ...|+ ...|..+...+...|+++.|+..++++++..|+++..+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 44566666677777777777777664 11122 35777888888888999999999999999999888888888888
Q ss_pred HHhcCC
Q 036237 529 YAAAGQ 534 (689)
Q Consensus 529 ~~~~g~ 534 (689)
|...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 888776
No 163
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.39 E-value=0.0015 Score=59.61 Aligned_cols=93 Identities=10% Similarity=-0.092 Sum_probs=73.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHH
Q 036237 453 IEHYGCLVDILCRTGYLEEAKSTIESM-PMRPN----FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSN 527 (689)
Q Consensus 453 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~ 527 (689)
...|..++..+...|++++|...+++. ...|+ ..+|..+...+...|++++|+..+++++++.|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 455666777777888888888888775 22222 3478889999999999999999999999999998888888888
Q ss_pred HHH-------hcCCcchHHHHHHHH
Q 036237 528 IYA-------AAGQWDKVSEVREMM 545 (689)
Q Consensus 528 ~~~-------~~g~~~~A~~~~~~m 545 (689)
+|. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 788888777666654
No 164
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.38 E-value=0.028 Score=56.07 Aligned_cols=124 Identities=12% Similarity=0.184 Sum_probs=67.6
Q ss_pred HHhhHHhc-CCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HH-HH
Q 036237 357 LIQMYSKC-GSIESALTVFRAISK-----KK----VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT-----AI-TF 420 (689)
Q Consensus 357 li~~~~~~-g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~-t~ 420 (689)
+...|-.. |++++|.+.|++..+ .. ...+..+...+.+.|++++|+++|++....-...+ .. .|
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 44455555 677777776665542 11 12455667778888888888888888776432221 11 22
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHh-cCCCCC--hhHHHHHHHHHHh--cCCHHHHHHHHHhCC
Q 036237 421 IGVLNACSHAGLVNDGRRYFNMMIND-YGIEPT--IEHYGCLVDILCR--TGYLEEAKSTIESMP 480 (689)
Q Consensus 421 ~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~p~--~~~~~~li~~~~~--~g~~~~A~~~~~~~~ 480 (689)
...+-.+...|+...|.+.++..... .++..+ ......|++++-. ...+++|..-|+.+.
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 33333555667888888888776621 122222 2344455555543 345666776676664
No 165
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.37 E-value=0.0033 Score=64.80 Aligned_cols=100 Identities=16% Similarity=0.162 Sum_probs=80.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHh
Q 036237 388 MIVGLGMHGMATQALDLFNKMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCR 465 (689)
Q Consensus 388 li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~ 465 (689)
....+...|++++|++.|++.++. .|+ ...|..+..++...|++++|+..++.++. +.|+ ...|..+..+|..
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHH
Confidence 355677889999999999999984 454 55777888899999999999999999983 4554 6788899999999
Q ss_pred cCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 036237 466 TGYLEEAKSTIESM-PMRPNFVIWMSLL 492 (689)
Q Consensus 466 ~g~~~~A~~~~~~~-~~~p~~~~~~~ll 492 (689)
.|++++|...|++. ...|+.......+
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999999986 4556544444343
No 166
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.36 E-value=0.00055 Score=65.29 Aligned_cols=88 Identities=16% Similarity=0.204 Sum_probs=78.8
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcch
Q 036237 460 VDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDK 537 (689)
Q Consensus 460 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~ 537 (689)
..-+.+.+++++|...+.++ .+.| |++.|..-..+|.+.|.++.|++..+.++.++|....+|..|+.+|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 34567889999999999886 5555 778888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 036237 538 VSEVREMMKK 547 (689)
Q Consensus 538 A~~~~~~m~~ 547 (689)
|.+.|++..+
T Consensus 168 A~~aykKaLe 177 (304)
T KOG0553|consen 168 AIEAYKKALE 177 (304)
T ss_pred HHHHHHhhhc
Confidence 9999887654
No 167
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.34 E-value=0.0066 Score=55.50 Aligned_cols=130 Identities=13% Similarity=0.198 Sum_probs=89.1
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHH
Q 036237 381 KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT--AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYG 457 (689)
Q Consensus 381 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~ 457 (689)
....+..+...|...|++++|+..|++.......|+ ...+..+...+.+.|++++|...+++... ..|+ ...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHH
Confidence 344677778888888899999988888876443332 34677777788888888888888888873 3343 55666
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCC
Q 036237 458 CLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQ 534 (689)
Q Consensus 458 ~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~ 534 (689)
.+..+|...|+...+..-++.. ...++.|...++++++.+|++ |..++..+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 6777777777766655433321 112677888999999999875 5555555555544
No 168
>PRK15331 chaperone protein SicA; Provisional
Probab=97.30 E-value=0.0051 Score=53.92 Aligned_cols=89 Identities=10% Similarity=-0.055 Sum_probs=76.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcc
Q 036237 459 LVDILCRTGYLEEAKSTIESMP-M-RPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWD 536 (689)
Q Consensus 459 li~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~ 536 (689)
..--+-..|++++|..+|.-+- . .-|..-|..|...|...++++.|+..|..+..+.++||..+...+.+|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 3444567899999999988752 2 2366778999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHh
Q 036237 537 KVSEVREMMKK 547 (689)
Q Consensus 537 ~A~~~~~~m~~ 547 (689)
.|+..|+...+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999998776
No 169
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.29 E-value=0.003 Score=50.45 Aligned_cols=89 Identities=17% Similarity=0.123 Sum_probs=43.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 036237 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDIL 463 (689)
Q Consensus 385 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 463 (689)
|..+...+...|++++|+..|++..+. .|+ ...+..+...+...+++++|.+.++..... .+.+...+..+...+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~ 78 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHH
Confidence 445555566666666666666666553 222 234444555555555566666555555421 111223334444444
Q ss_pred HhcCCHHHHHHHHH
Q 036237 464 CRTGYLEEAKSTIE 477 (689)
Q Consensus 464 ~~~g~~~~A~~~~~ 477 (689)
...|++++|...+.
T Consensus 79 ~~~~~~~~a~~~~~ 92 (100)
T cd00189 79 YKLGKYEEALEAYE 92 (100)
T ss_pred HHHHhHHHHHHHHH
Confidence 44444444444443
No 170
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.27 E-value=0.00034 Score=52.62 Aligned_cols=52 Identities=23% Similarity=0.352 Sum_probs=42.2
Q ss_pred HhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 496 RNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 496 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
...|++++|+..++++++.+|+++.+...|+.+|.+.|++++|.++++++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4568888888888888888888888888888888888888888888876654
No 171
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.25 E-value=0.0012 Score=49.03 Aligned_cols=61 Identities=23% Similarity=0.256 Sum_probs=47.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc
Q 036237 459 LVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTI 519 (689)
Q Consensus 459 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 519 (689)
+...+.+.|++++|...|++. ...| +...|..+...+...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456677888888888888876 3445 556888888899999999999999999999999864
No 172
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.24 E-value=0.016 Score=52.70 Aligned_cols=80 Identities=11% Similarity=0.113 Sum_probs=55.1
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHH
Q 036237 382 VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT--AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGC 458 (689)
Q Consensus 382 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 458 (689)
...|..++..+...|++++|+..|++.......|. ..++..+...+.+.|++++|+..++.... +.|+ ...+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~---~~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE---RNPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHH
Confidence 44667777778888888888888888876432222 23677777888888888888888888773 2343 445555
Q ss_pred HHHHHH
Q 036237 459 LVDILC 464 (689)
Q Consensus 459 li~~~~ 464 (689)
+...|.
T Consensus 112 la~i~~ 117 (168)
T CHL00033 112 MAVICH 117 (168)
T ss_pred HHHHHH
Confidence 555555
No 173
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.22 E-value=0.0014 Score=64.71 Aligned_cols=256 Identities=13% Similarity=0.034 Sum_probs=149.3
Q ss_pred HHHcCChHHHHHHHHHhccCCCC---cChhhHHHHHHHHHcccchhhHHHHHHHHH--Hh--CCc-cchhHHhHHHhhHH
Q 036237 291 YELNGRFMEALELLETMLIGDVL---PNDATLVSALSAVAGLAVLNKGRWMHSYIV--KN--GFV-VDGVLGTLLIQMYS 362 (689)
Q Consensus 291 ~~~~g~~~~A~~~~~~m~~~g~~---p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~--~~--g~~-~~~~~~~~li~~~~ 362 (689)
+++.|+.+..+.+|+..++.|-. .=+..|..+-++|..++++++|.++|..=+ .. |-. ........|.+.+-
T Consensus 27 Lck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlK 106 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLK 106 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhh
Confidence 56667777777777777665521 112345555566666777777777654321 10 000 01111112333333
Q ss_pred hcCCHHHHHHHHHhcCC-------C--ChhhHHHHHHHHHHcCC--------------------HHHHHHHHHHHH----
Q 036237 363 KCGSIESALTVFRAISK-------K--KVGHWTAMIVGLGMHGM--------------------ATQALDLFNKMC---- 409 (689)
Q Consensus 363 ~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~--------------------~~~A~~l~~~m~---- 409 (689)
-.|.+++|.-.-.+-.. + ....+..+...|...|+ ++.|.+.|.+-.
T Consensus 107 v~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~ 186 (639)
T KOG1130|consen 107 VKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSE 186 (639)
T ss_pred hhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555433221110 0 11234444555544331 223444444321
Q ss_pred HCCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHH---hHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-----
Q 036237 410 RMGMK-PTAITFIGVLNACSHAGLVNDGRRYFNM---MINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESM----- 479 (689)
Q Consensus 410 ~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~---~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~----- 479 (689)
+.|-. .....|..|.+.|.-.|++++|+..++. +.+++|-... ...+..|...+.-.|+++.|.+.++..
T Consensus 187 ~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAi 266 (639)
T KOG1130|consen 187 KLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAI 266 (639)
T ss_pred HhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHH
Confidence 11200 1123566666667778999999988764 2334554433 467888999999999999999988764
Q ss_pred --CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhc----C--CCCchhHHHHHHHHHhcCCcchHHHHHHHHH
Q 036237 480 --PMR-PNFVIWMSLLSGARNHGNKDIGEYAANNLIKV----A--PDTIGCYVVLSNIYAAAGQWDKVSEVREMMK 546 (689)
Q Consensus 480 --~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~ 546 (689)
+.+ ....+..+|.++|....+++.|+..+.+-+.+ + .....++..|+++|...|..++|..+.+.-.
T Consensus 267 elg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 267 ELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 211 24556778888998888999999888765542 2 1235689999999999999999988776554
No 174
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.19 E-value=0.39 Score=50.02 Aligned_cols=437 Identities=11% Similarity=0.087 Sum_probs=239.1
Q ss_pred CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCC-cccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHH
Q 036237 84 HPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPD-NFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSS 162 (689)
Q Consensus 84 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 162 (689)
+-|+.+|+.||+-+-.. ..+++.+.|++|.. +.|+ ...|..-+..-.+..+++....+|.+.+..-+ +...|..
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~--~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~l 91 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVN--VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKL 91 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhc--cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHH
Confidence 35888999999977655 89999999999985 4554 56788888888899999999999999887743 4556665
Q ss_pred HHHHHHh-cCChHHHH----HHHhh------CCCCCeehHHHHHHH---------HHhCCChHHHHHHHhhCCCCCcchH
Q 036237 163 LVSMYAK-FGEIDLGR----RVFDA------MDDKDLVSWNCLIDG---------YVKKGEVEVAMKLFDEMPDRDLFSW 222 (689)
Q Consensus 163 li~~~~~-~g~~~~A~----~~~~~------m~~~~~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~~d~~~~ 222 (689)
-++---+ .|+...++ +.|+- |.-.+-..|+..+.- |..+.+++...++++++........
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nl 171 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNL 171 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccH
Confidence 5553322 23333322 22221 112234446655532 3333455556666666654221111
Q ss_pred HHHHHHHH---hCCChHHHHHHHhhcCcCCcchHHHHHHHHHhcCCHHHHHHHHHhcC------CC--------------
Q 036237 223 TCLVDGFS---KCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDME------IR-------------- 279 (689)
Q Consensus 223 ~~li~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~-------------- 279 (689)
.-|-+-|. +.=+.-.|.++..+ +...+..|.++++++. .+
T Consensus 172 EkLW~DY~~fE~~IN~~tarK~i~e-----------------~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~ 234 (656)
T KOG1914|consen 172 EKLWKDYEAFEQEINIITARKFIGE-----------------RSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEI 234 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-----------------hCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHH
Confidence 11111110 00000111111110 1112233333333321 00
Q ss_pred -ChHHHHHHHHHHHHcCCh--------HHHHHHHHHh-ccCCCCcChhh-HHHHH----HHHHcccc-------hhhHHH
Q 036237 280 -DLITWNSMIAGYELNGRF--------MEALELLETM-LIGDVLPNDAT-LVSAL----SAVAGLAV-------LNKGRW 337 (689)
Q Consensus 280 -~~~~~~~li~~~~~~g~~--------~~A~~~~~~m-~~~g~~p~~~t-~~~ll----~a~~~~~~-------~~~a~~ 337 (689)
-+..|-.+|.-=..++-- ....-.+++. +-.+..|+..- +...+ ..+...|+ .+++..
T Consensus 235 ~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~ 314 (656)
T KOG1914|consen 235 QQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAAS 314 (656)
T ss_pred HHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHH
Confidence 011233333221111100 0011111111 11122222111 00001 11222232 334555
Q ss_pred HHHHHHHhCCccchhHHhHHHhhHHhcC---CHHHHHHHHHhcCC----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036237 338 MHSYIVKNGFVVDGVLGTLLIQMYSKCG---SIESALTVFRAISK----KKVGHWTAMIVGLGMHGMATQALDLFNKMCR 410 (689)
Q Consensus 338 i~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 410 (689)
+++..+..-...+..+|..+.+---..- ..+.....++++.. .-..+|-..+..-.+..-...|..+|.+..+
T Consensus 315 ~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~ 394 (656)
T KOG1914|consen 315 IYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKARE 394 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 5555554433334445544433211111 13334444444433 2234677777777777778999999999999
Q ss_pred CCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC---CCC--C
Q 036237 411 MGMKP-TAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP---MRP--N 484 (689)
Q Consensus 411 ~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~p--~ 484 (689)
.+..+ +.....+++.-++ .++..-|.++|+.-.+.+| -++.--...++-+...++-..|..+|++.- ..| .
T Consensus 395 ~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks 471 (656)
T KOG1914|consen 395 DKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKS 471 (656)
T ss_pred ccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhh
Confidence 98888 4556777776655 5788999999998876544 334555678899999999999999999872 233 3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC----chhHHHHHHHHHhcCCcchHHHHHHHH
Q 036237 485 FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDT----IGCYVVLSNIYAAAGQWDKVSEVREMM 545 (689)
Q Consensus 485 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~L~~~~~~~g~~~~A~~~~~~m 545 (689)
..+|..++.--..-||+....++-++....-|.+ ...-..+.+.|.-.+.+..-..-++.|
T Consensus 472 ~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 472 KEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 4699999999999999999999988877655521 113345556666666665544444444
No 175
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.17 E-value=0.42 Score=51.12 Aligned_cols=199 Identities=15% Similarity=0.083 Sum_probs=127.8
Q ss_pred CCCcccHHHHHHHHHhcCChHHHHHHHHHHHHh-CCC--------CchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCee
Q 036237 119 LPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKL-GFG--------FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLV 189 (689)
Q Consensus 119 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 189 (689)
.|.+..|..+.......-.++.|...|-+.... |++ .+.....+=|.+| .|++++|++++-+|..+|..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDLA 766 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDLA 766 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhhh
Confidence 466677777776666666666666665443221 111 1111222223333 48999999999999888753
Q ss_pred hHHHHHHHHHhCCChHHHHHHHhhCCCC--C---cchHHHHHHHHHhCCChHHHHHHHhhcCcCCcchHHHHHHHHHhcC
Q 036237 190 SWNCLIDGYVKKGEVEVAMKLFDEMPDR--D---LFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAG 264 (689)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--d---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 264 (689)
|..+.+.|++-...++++.-... | ...|+.+...++....+++|.+.|..... ....+..|.+..
T Consensus 767 -----ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-----~e~~~ecly~le 836 (1189)
T KOG2041|consen 767 -----IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-----TENQIECLYRLE 836 (1189)
T ss_pred -----HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----hHhHHHHHHHHH
Confidence 56777788888888887764332 1 24788888888888889999888876532 234667777777
Q ss_pred CHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHH
Q 036237 265 DVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMH 339 (689)
Q Consensus 265 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~ 339 (689)
++++-+.+-..+++ |....-.|...+...|.-++|.+.|-+-- .| ...+.+|..+.++.+|.++-
T Consensus 837 ~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~LnQW~~avela 901 (1189)
T KOG2041|consen 837 LFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELNQWGEAVELA 901 (1189)
T ss_pred hhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHHHHHHHHHHH
Confidence 77777777666665 34445567777888888888877664432 12 23455666666666665543
No 176
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.15 E-value=0.00027 Score=44.36 Aligned_cols=32 Identities=22% Similarity=0.512 Sum_probs=30.4
Q ss_pred HHHHhhcCCCCchhHHHHHHHHHhcCCcchHH
Q 036237 508 ANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVS 539 (689)
Q Consensus 508 ~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~ 539 (689)
++++++++|+++.+|..|+.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 68899999999999999999999999999986
No 177
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.15 E-value=0.0011 Score=50.73 Aligned_cols=57 Identities=9% Similarity=0.056 Sum_probs=48.6
Q ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 036237 493 SGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRG 549 (689)
Q Consensus 493 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~ 549 (689)
..+.+.++++.|..+++++++++|+++..+...+.+|.+.|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 457788888999999999999999888888889999999999999999888887643
No 178
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=0.097 Score=49.15 Aligned_cols=230 Identities=10% Similarity=0.027 Sum_probs=143.0
Q ss_pred ehHHHHHHHHHhCCChHHHHHHHhhCCC---CCcchHHHHHHHH-HhCCC-hHHHHH-HHhhcCcCCcchHHHHHHHHHh
Q 036237 189 VSWNCLIDGYVKKGEVEVAMKLFDEMPD---RDLFSWTCLVDGF-SKCGK-VEIARE-IFYRMPNRNLVSWNAMINGYMK 262 (689)
Q Consensus 189 ~~~~~li~~~~~~g~~~~A~~~~~~m~~---~d~~~~~~li~~~-~~~g~-~~~A~~-~~~~~~~~~~~~~~~li~~~~~ 262 (689)
..|+.-+..+++....++|..-++...+ ||.. |...=..| .+.|. +.-+.+ ++..+...-...+++|+..|.-
T Consensus 70 q~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~-Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L 148 (366)
T KOG2796|consen 70 QLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLY-YEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKL 148 (366)
T ss_pred HHHHHHHHHHHHHhhhHHHHhhhhhhccCCCccee-eeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 4577778888888888888665555433 3221 00000000 01111 111222 2333333345566777777776
Q ss_pred cCCHHHHHHHHHhcCCC--Ch--------HHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccch
Q 036237 263 AGDVDSACELFDDMEIR--DL--------ITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVL 332 (689)
Q Consensus 263 ~g~~~~A~~~~~~~~~~--~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 332 (689)
..-+++-...|+.=..+ .+ ...+.++..+.-.|.+.-.+.++++..+...+.+......+.+.-.+.|+.
T Consensus 149 ~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~ 228 (366)
T KOG2796|consen 149 KTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDI 228 (366)
T ss_pred HHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccH
Confidence 66666666666553322 22 334566777777788888888888888876666777777888888889999
Q ss_pred hhHHHHHHHHHHhCCccch-----hHHhHHHhhHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHH
Q 036237 333 NKGRWMHSYIVKNGFVVDG-----VLGTLLIQMYSKCGSIESALTVFRAISK---KKVGHWTAMIVGLGMHGMATQALDL 404 (689)
Q Consensus 333 ~~a~~i~~~~~~~g~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l 404 (689)
+.|...++...+..-..+. .+.......|.-.+++..|...|+++.. .++..-|.-.-+..-.|+..+|++.
T Consensus 229 k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~ 308 (366)
T KOG2796|consen 229 KTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQ 308 (366)
T ss_pred HHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHH
Confidence 9999999887765433333 3333334456667888888888887775 3455555555555566888899999
Q ss_pred HHHHHHCCCCCCHHHHH
Q 036237 405 FNKMCRMGMKPTAITFI 421 (689)
Q Consensus 405 ~~~m~~~g~~p~~~t~~ 421 (689)
.+.|.+ ..|...+-+
T Consensus 309 ~e~~~~--~~P~~~l~e 323 (366)
T KOG2796|consen 309 LEAMVQ--QDPRHYLHE 323 (366)
T ss_pred HHHHhc--cCCccchhh
Confidence 999887 455555444
No 179
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.13 E-value=0.0088 Score=52.24 Aligned_cols=93 Identities=8% Similarity=-0.015 Sum_probs=48.6
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHH
Q 036237 381 KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI-TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGC 458 (689)
Q Consensus 381 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 458 (689)
+......+..-+.+.|++++|..+|+-+.. +.|... -|..|..+|...|++++|+..|.... .+.|| +..+-.
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~---~L~~ddp~~~~~ 108 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAA---QIKIDAPQAPWA 108 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH---hcCCCCchHHHH
Confidence 333344444555566666666666666555 344433 34444455555666666666666555 22333 444445
Q ss_pred HHHHHHhcCCHHHHHHHHHh
Q 036237 459 LVDILCRTGYLEEAKSTIES 478 (689)
Q Consensus 459 li~~~~~~g~~~~A~~~~~~ 478 (689)
+...|...|+.++|.+-|+.
T Consensus 109 ag~c~L~lG~~~~A~~aF~~ 128 (157)
T PRK15363 109 AAECYLACDNVCYAIKALKA 128 (157)
T ss_pred HHHHHHHcCCHHHHHHHHHH
Confidence 55555555555555555543
No 180
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.13 E-value=0.34 Score=48.34 Aligned_cols=242 Identities=19% Similarity=0.212 Sum_probs=157.4
Q ss_pred HcCChHHHHHHHHHhccCCCCcChh--hHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHH
Q 036237 293 LNGRFMEALELLETMLIGDVLPNDA--TLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESA 370 (689)
Q Consensus 293 ~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 370 (689)
-.|++++|.+-|+.|... |... .+..+.-..-+.|+.+.|+++-+..-..- +.-.....+.++..+..|+++.|
T Consensus 132 ~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~A 207 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGA 207 (531)
T ss_pred hcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHH
Confidence 357777787777777642 2111 11222223345677777777766655443 22356677788889999999999
Q ss_pred HHHHHhcCC-----CChh--hHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCcHHHHHHH
Q 036237 371 LTVFRAISK-----KKVG--HWTAMIVGLGM---HGMATQALDLFNKMCRMGMKPTAIT-FIGVLNACSHAGLVNDGRRY 439 (689)
Q Consensus 371 ~~~~~~~~~-----~~~~--~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~ 439 (689)
+++.+.-.. +++. .-..|+.+-+. ..+...|...-.+..+ +.||.+- -.....++.+.|++.++-.+
T Consensus 208 lkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~i 285 (531)
T COG3898 208 LKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKI 285 (531)
T ss_pred HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhH
Confidence 999886543 3432 22233333221 3456666666655554 6788653 34445788999999999999
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH--HHH--HHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 036237 440 FNMMINDYGIEPTIEHYGCLVDILCRTGYLEE--AKS--TIESMPMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKV 514 (689)
Q Consensus 440 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~--A~~--~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 514 (689)
++.+-+ ..|.+...... .+.|.|+... ... -+.. ++| +..+..++..+-...|++..|..-.+.+...
T Consensus 286 lE~aWK---~ePHP~ia~lY--~~ar~gdta~dRlkRa~~L~s--lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~ 358 (531)
T COG3898 286 LETAWK---AEPHPDIALLY--VRARSGDTALDRLKRAKKLES--LKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE 358 (531)
T ss_pred HHHHHh---cCCChHHHHHH--HHhcCCCcHHHHHHHHHHHHh--cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 999883 45665544322 3445555221 111 1223 345 4567778888888999999999999999999
Q ss_pred CCCCchhHHHHHHHHHh-cCCcchHHHHHHHHHhC
Q 036237 515 APDTIGCYVVLSNIYAA-AGQWDKVSEVREMMKKR 548 (689)
Q Consensus 515 ~p~~~~~~~~L~~~~~~-~g~~~~A~~~~~~m~~~ 548 (689)
.|.. ..|..|+++-.. .|+-.++...+.+..+.
T Consensus 359 ~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 359 APRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred Cchh-hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 9954 689999998765 49999998888776643
No 181
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.12 E-value=0.0012 Score=52.04 Aligned_cols=80 Identities=16% Similarity=0.288 Sum_probs=43.9
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHH
Q 036237 395 HGMATQALDLFNKMCRMGM-KPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEA 472 (689)
Q Consensus 395 ~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 472 (689)
.|++++|+.+|+++.+... .|+...+..+..++.+.|++++|..+++. . ...|+ ....-.+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 4667777777777766422 11333444456666777777777777766 2 12222 23333446666666666666
Q ss_pred HHHHHh
Q 036237 473 KSTIES 478 (689)
Q Consensus 473 ~~~~~~ 478 (689)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666654
No 182
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.12 E-value=0.013 Score=63.12 Aligned_cols=141 Identities=12% Similarity=0.054 Sum_probs=103.8
Q ss_pred CCCChhhHHHHHHHHHHc--C---CHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcc--------CcHHHHHHHHHHh
Q 036237 378 SKKKVGHWTAMIVGLGMH--G---MATQALDLFNKMCRMGMKPTAI-TFIGVLNACSHA--------GLVNDGRRYFNMM 443 (689)
Q Consensus 378 ~~~~~~~~~~li~~~~~~--g---~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~--------g~~~~a~~~~~~~ 443 (689)
...+...|...+.+.... + ...+|..+|++..+ ..|+.. .+..+..++... .++..+.+..+..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 346788999988885543 2 36799999999998 678854 555544443221 1233444444443
Q ss_pred HHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCch
Q 036237 444 INDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIG 520 (689)
Q Consensus 444 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 520 (689)
........+...|..+.-.+...|++++|...++++ ...|+...|..+...+...|+.++|...+++++.++|.++.
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 321123334577888877777889999999999997 46789889999999999999999999999999999998874
No 183
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.0067 Score=58.44 Aligned_cols=102 Identities=12% Similarity=0.071 Sum_probs=86.9
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhc---CChHHHHHHHHHHhhcCCCCchhHHH
Q 036237 450 EPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMR-PNFVIWMSLLSGARNH---GNKDIGEYAANNLIKVAPDTIGCYVV 524 (689)
Q Consensus 450 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~p~~~~~~~~ 524 (689)
+-|...|-.|...|.+.|+++.|..-|.+. .+. +++..+..+..++..+ .+..++..+++++++++|.++.+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 345889999999999999999999999886 333 4667777777776544 35678999999999999999999999
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhCCCc
Q 036237 525 LSNIYAAAGQWDKVSEVREMMKKRGFR 551 (689)
Q Consensus 525 L~~~~~~~g~~~~A~~~~~~m~~~~~~ 551 (689)
|+..+...|++.+|...++.|.+..-.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999986543
No 184
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.10 E-value=0.027 Score=56.11 Aligned_cols=115 Identities=17% Similarity=0.154 Sum_probs=70.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-CcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHH
Q 036237 388 MIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHA-GLVNDGRRYFNMMINDYGIEPT----IEHYGCLVDI 462 (689)
Q Consensus 388 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~ 462 (689)
.+..|...|++..|-+.+.++ ...|... |++++|.+.|+....-+..... ...+..+...
T Consensus 100 A~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 345566666666655555444 3456666 7888888888877643322222 3456677888
Q ss_pred HHhcCCHHHHHHHHHhCC---C-----CCCHH-HHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 036237 463 LCRTGYLEEAKSTIESMP---M-----RPNFV-IWMSLLSGARNHGNKDIGEYAANNLIKVAPD 517 (689)
Q Consensus 463 ~~~~g~~~~A~~~~~~~~---~-----~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 517 (689)
+.+.|++++|.++|++.. . +.+.. .+...+-.+...||...|...+++....+|.
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 999999999999998762 1 11222 2233333556678999999999999888874
No 185
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.07 E-value=0.018 Score=57.12 Aligned_cols=134 Identities=11% Similarity=0.126 Sum_probs=96.8
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 036237 383 GHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNA-CSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVD 461 (689)
Q Consensus 383 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 461 (689)
.+|..++...-+.+..+.|..+|.+..+.+ .-+...|...... +...++.+.|.++|+...+. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 357777787778888888888888887543 2233344433333 33356777799999999864 4566778888899
Q ss_pred HHHhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc
Q 036237 462 ILCRTGYLEEAKSTIESMP-MRPN----FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTI 519 (689)
Q Consensus 462 ~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 519 (689)
.+.+.|+.+.|..+|++.- .-|. ...|...+.-=.+.|+.+....+.+++.+.-|++.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999862 2233 34899999999999999999999999999888753
No 186
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.05 E-value=0.081 Score=55.75 Aligned_cols=97 Identities=18% Similarity=0.198 Sum_probs=57.0
Q ss_pred HHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH
Q 036237 357 LIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDG 436 (689)
Q Consensus 357 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 436 (689)
..+++...|+.++|..+. ..+|-.+-++++-+++-. .+..+...+..-+-+...+.-|
T Consensus 709 AAEmLiSaGe~~KAi~i~------------------~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLA 766 (1081)
T KOG1538|consen 709 AAEMLISAGEHVKAIEIC------------------GDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLA 766 (1081)
T ss_pred HHHHhhcccchhhhhhhh------------------hcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchH
Confidence 345555666666665542 334444445554444332 2233444444445556666777
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCH
Q 036237 437 RRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMP-MRPNF 485 (689)
Q Consensus 437 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~ 485 (689)
-++|.+|-. ...++++....++|.+|..+-++.| ..||+
T Consensus 767 aeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dV 806 (1081)
T KOG1538|consen 767 AEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDV 806 (1081)
T ss_pred HHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccc
Confidence 777777752 2457788888888888888888875 33443
No 187
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.05 E-value=0.091 Score=46.69 Aligned_cols=132 Identities=14% Similarity=0.121 Sum_probs=99.5
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC-CCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC---CHHH
Q 036237 413 MKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGI-EPTIEHYGCLVDILCRTGYLEEAKSTIESMP-MRP---NFVI 487 (689)
Q Consensus 413 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p---~~~~ 487 (689)
..|+...-..|..+....|+..+|...|++... |+ .-|....-.+.++....+++.+|...+++.. ..| .+.+
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 567777777788888999999999999988874 54 4456777778888888899999988888762 112 2223
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 488 WMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 488 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
-..+...+...|..+.|+..|+.++.-.| .+..-......+.+.|+.+++..-+..+.+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 44566778889999999999999999887 445666677888999988888766555543
No 188
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.03 E-value=0.45 Score=47.93 Aligned_cols=106 Identities=18% Similarity=0.185 Sum_probs=72.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccc
Q 036237 252 SWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAV 331 (689)
Q Consensus 252 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 331 (689)
+.+..|.-+...|+...|.++-.+..-+|-.-|-..+.+++..++|++-.++... +-++..|-.++.+|.+.|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3344455666778888888888888878888888888888888888776665432 1234677777778877777
Q ss_pred hhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHH
Q 036237 332 LNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTV 373 (689)
Q Consensus 332 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 373 (689)
..+|..+...+ .+..-+.+|.++|++.+|.+.
T Consensus 253 ~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 253 KKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHH
Confidence 77777665541 114456777777777777655
No 189
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.03 E-value=0.48 Score=48.30 Aligned_cols=443 Identities=15% Similarity=0.111 Sum_probs=197.8
Q ss_pred HHhcCCCchHHHHHHHHHHHhCCCCC------chHHHHHhhcccccCCCCHHHHHHHHhcccC-CCChhhHHHHHHHH--
Q 036237 27 ILKFSSTHKETQQLHALSVKTNLIYH------SGISSRLLSLYVDPHINNLHYARSIFDRILQ-HPSLVLYNLLIKCY-- 97 (689)
Q Consensus 27 ~l~~c~~~~~~~~~~~~~~~~g~~~~------~~~~~~ll~~~~~~~~g~~~~A~~~f~~~~~-~~~~~~~~~ll~~~-- 97 (689)
+|+--.+..++..++..+.+.- ..+ ....+.++++|-- .+++..........+ .| ...|-.+..++
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl---~nld~Me~~l~~l~~~~~-~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL---NNLDLMEKQLMELRQQFG-KSAYLPLFKALVA 89 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH---hhHHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 3444445677777777776542 112 2345566777764 555555555444442 23 33455555443
Q ss_pred HhCCCchHHHHHHHHhHhC--CCCC---Cc--------ccH-HHHHHHHHhcCChHHHHHHHHHHHHhCCC----CchhH
Q 036237 98 VFNQRSHEALTLFCDLLDR--FLLP---DN--------FTL-PCVIKGAARLGAIKEGKQIHGLVFKLGFG----FDKFV 159 (689)
Q Consensus 98 ~~~g~~~~a~~~~~~m~~~--g~~p---~~--------~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~ 159 (689)
-+.+.++.|++.+..-... +..| |. +.+ +..+.++...|++.+|+.++++++..=++ -+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 3567777777777655443 2221 11 111 23344556777777777777776655333 56667
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCCeehHHHHHHHHHhCCChHHHHHHHhhCCCCCcchHHHHHHHHHhC-----CC
Q 036237 160 LSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKC-----GK 234 (689)
Q Consensus 160 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~-----g~ 234 (689)
||.++-++++.=-++. -+.+...=..-|-.||..|.+.=+.-++...-.-. |-..-...++....-. .-
T Consensus 170 yd~~vlmlsrSYfLEl----~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~--peeeL~s~imqhlfi~p~e~l~~ 243 (549)
T PF07079_consen 170 YDRAVLMLSRSYFLEL----KESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFI--PEEELFSTIMQHLFIVPKERLPP 243 (549)
T ss_pred HHHHHHHHhHHHHHHH----HHhcccccChHHHHHHHHHHHHHHHHhhchHHhhC--cHHHHHHHHHHHHHhCCHhhccH
Confidence 7776666655311111 11111111223555555555442221111000000 1111111111111100 00
Q ss_pred hHHHHHHHhhcC-cCC-cchHHHHHHHHHhcCCHHHHHHHHHhcC--------CCChHHHHHHHHHHHHcCChHHHHHHH
Q 036237 235 VEIAREIFYRMP-NRN-LVSWNAMINGYMKAGDVDSACELFDDME--------IRDLITWNSMIAGYELNGRFMEALELL 304 (689)
Q Consensus 235 ~~~A~~~~~~~~-~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~ 304 (689)
+-.+.+.++.-- .|+ ..+...|+.-+.+ +.+++..+-+.+. ++=+.++..++....+.++..+|...+
T Consensus 244 ~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l 321 (549)
T PF07079_consen 244 LMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYL 321 (549)
T ss_pred HHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 111222221111 121 1222333333333 3333333332221 223456777777788888888887777
Q ss_pred HHhccCCCCcChhhHHHH-------HHHHH-cccc---hhhHHHHHHHHHHhCCccchhHHhHHHh---hHHhcCC-HHH
Q 036237 305 ETMLIGDVLPNDATLVSA-------LSAVA-GLAV---LNKGRWMHSYIVKNGFVVDGVLGTLLIQ---MYSKCGS-IES 369 (689)
Q Consensus 305 ~~m~~~g~~p~~~t~~~l-------l~a~~-~~~~---~~~a~~i~~~~~~~g~~~~~~~~~~li~---~~~~~g~-~~~ 369 (689)
.-+.. +.|+...-.-+ -+..+ .-.. +..-..++..+....+..- ....-|+. -+-+.|. -++
T Consensus 322 ~lL~~--ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrq-QLvh~L~~~Ak~lW~~g~~dek 398 (549)
T PF07079_consen 322 ALLKI--LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQ-QLVHYLVFGAKHLWEIGQCDEK 398 (549)
T ss_pred HHHHh--cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHH-HHHHHHHHHHHHHHhcCCccHH
Confidence 66654 23333211111 11111 1111 1111222333322222111 11111221 2333444 566
Q ss_pred HHHHHHhcCC---CChhhHHHHH----HHHHHc---CCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHH--HhccCcH
Q 036237 370 ALTVFRAISK---KKVGHWTAMI----VGLGMH---GMATQALDLFNKMCRMGMKPTAI----TFIGVLNA--CSHAGLV 433 (689)
Q Consensus 370 A~~~~~~~~~---~~~~~~~~li----~~~~~~---g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~a--~~~~g~~ 433 (689)
|.++++.+.. -|..+-|... ..|.+. ....+-+.+-+-..+.|+.|-.+ .-+.|..| +-..|++
T Consensus 399 alnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey 478 (549)
T PF07079_consen 399 ALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEY 478 (549)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccH
Confidence 6777766654 2333333221 122221 12233333333344556666433 22223322 3456777
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 036237 434 NDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMS 490 (689)
Q Consensus 434 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 490 (689)
.++.-+-.-+. .+.|++.+|..+.-.+....+++||..++..+| |+..+|++
T Consensus 479 ~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 479 HKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred HHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 77665544444 567777777777777777777777777777775 56555554
No 190
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.02 E-value=0.43 Score=47.62 Aligned_cols=270 Identities=16% Similarity=0.097 Sum_probs=133.8
Q ss_pred CCCHHHHHHHHhcccC--CCChhhHHHHHHHH--HhCCCchHHHHHHHHhHhCCCCCCcccHHHHHH----HHHhcCChH
Q 036237 68 INNLHYARSIFDRILQ--HPSLVLYNLLIKCY--VFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIK----GAARLGAIK 139 (689)
Q Consensus 68 ~g~~~~A~~~f~~~~~--~~~~~~~~~ll~~~--~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~----~~~~~~~~~ 139 (689)
.|+-..|++.-.+... ..|....-.++.+- .-.|+++.|.+-|+.|.. |..|-..=++ ..-+.|+.+
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~Gare 171 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGARE 171 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHH
Confidence 5666666666544332 33433344444332 335777777777777764 2222222222 223567777
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC-----CCCee--hHHHHHHHHHh---CCChHHHHH
Q 036237 140 EGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD-----DKDLV--SWNCLIDGYVK---KGEVEVAMK 209 (689)
Q Consensus 140 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~~~~--~~~~li~~~~~---~g~~~~A~~ 209 (689)
.|+++-+..-..- +.-...+.+++...+..|+++.|+++.+.-. ++|+. .-..|+.+-+. ..+...|..
T Consensus 172 aAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~ 250 (531)
T COG3898 172 AARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD 250 (531)
T ss_pred HHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 7777666665443 2334566777777777777777777776543 23322 11122221111 123333433
Q ss_pred HHhhCCC--CCcch-HHHHHHHHHhCCChHHHHHHHhhcCcCCcchHHHHHHHHHhcCCHHHH----HHHHHhcCCCChH
Q 036237 210 LFDEMPD--RDLFS-WTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSA----CELFDDMEIRDLI 282 (689)
Q Consensus 210 ~~~~m~~--~d~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A----~~~~~~~~~~~~~ 282 (689)
.-.+..+ ||.+- -..-..++.+.|+..++-.+++.+-+..+..--.++..+.+.|+.... .+-+..|+..+..
T Consensus 251 ~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdta~dRlkRa~~L~slk~nnae 330 (531)
T COG3898 251 DALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGDTALDRLKRAKKLESLKPNNAE 330 (531)
T ss_pred HHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCCcHHHHHHHHHHHHhcCccchH
Confidence 3333322 34332 222334566666666666666666665544444455555555543211 1124445555555
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHH-HcccchhhHHHHHHHHHHh
Q 036237 283 TWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAV-AGLAVLNKGRWMHSYIVKN 345 (689)
Q Consensus 283 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~-~~~~~~~~a~~i~~~~~~~ 345 (689)
+--.+..+-...|++..|..--+.... ..|....|..+...- +..|+-.++++...+.++.
T Consensus 331 s~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 331 SSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 555555555566666555444443332 234444444444332 2234545555554444443
No 191
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.97 E-value=0.0086 Score=48.48 Aligned_cols=78 Identities=13% Similarity=0.019 Sum_probs=65.8
Q ss_pred HHHHHHHhCCCchHHHHHHHHhHhCCC-CCCcccHHHHHHHHHhcC--------ChHHHHHHHHHHHHhCCCCchhHHHH
Q 036237 92 LLIKCYVFNQRSHEALTLFCDLLDRFL-LPDNFTLPCVIKGAARLG--------AIKEGKQIHGLVFKLGFGFDKFVLSS 162 (689)
Q Consensus 92 ~ll~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~~~ 162 (689)
..|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+++.|+..+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 456666677999999999999999999 899999999999987643 24457788999999999999999999
Q ss_pred HHHHHHh
Q 036237 163 LVSMYAK 169 (689)
Q Consensus 163 li~~~~~ 169 (689)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 9987765
No 192
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.96 E-value=0.12 Score=52.49 Aligned_cols=160 Identities=14% Similarity=0.104 Sum_probs=106.7
Q ss_pred HHHhhHHhcCCHHHHHHHHHhcCCC---C----hhhHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036237 356 LLIQMYSKCGSIESALTVFRAISKK---K----VGHWTAMIVGLGM---HGMATQALDLFNKMCRMGMKPTAITFIGVLN 425 (689)
Q Consensus 356 ~li~~~~~~g~~~~A~~~~~~~~~~---~----~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 425 (689)
.|+-.|....+++..+++.+.+... + ...-....-++-+ .|+.++|++++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444588888888888888888763 1 1122233445556 7899999999999666666777888877766
Q ss_pred HHhc---------cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHH----HHHH---Hh-C------CCC
Q 036237 426 ACSH---------AGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEA----KSTI---ES-M------PMR 482 (689)
Q Consensus 426 a~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A----~~~~---~~-~------~~~ 482 (689)
.|-. ...+++|+..|.+.- .+.|+..+--.++-++...|...+. .++- .. . ...
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5432 335778888887655 4567655444455555555542222 2222 11 1 122
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 036237 483 PNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDT 518 (689)
Q Consensus 483 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 518 (689)
.|...+.+++.++.-.||.+.|.+.+++++++.|+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 566777899999999999999999999999998864
No 193
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.94 E-value=0.12 Score=49.91 Aligned_cols=56 Identities=13% Similarity=0.137 Sum_probs=33.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCC---hHH---HHHHHHHHHHcCChHHHHHHHHHhccCC
Q 036237 256 MINGYMKAGDVDSACELFDDMEIRD---LIT---WNSMIAGYELNGRFMEALELLETMLIGD 311 (689)
Q Consensus 256 li~~~~~~g~~~~A~~~~~~~~~~~---~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g 311 (689)
....+.+.|++++|.+.|+.+.... ... .-.++.+|.+.+++++|...|++..+.-
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 3444555667777777776665321 111 2334566677777777777777776643
No 194
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.94 E-value=0.0017 Score=48.67 Aligned_cols=54 Identities=26% Similarity=0.260 Sum_probs=24.1
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc
Q 036237 466 TGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTI 519 (689)
Q Consensus 466 ~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 519 (689)
.|++++|.++|+++ ...| +...+..+..+|...|++++|...++++...+|+++
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 59 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP 59 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH
Confidence 34444444444443 1112 334444445555555555555555555555555443
No 195
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.92 E-value=0.083 Score=51.09 Aligned_cols=170 Identities=14% Similarity=0.136 Sum_probs=103.3
Q ss_pred HhhHHhcCCHHHHHHHHHhcCCCCh---h---hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhc
Q 036237 358 IQMYSKCGSIESALTVFRAISKKKV---G---HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA--ITFIGVLNACSH 429 (689)
Q Consensus 358 i~~~~~~g~~~~A~~~~~~~~~~~~---~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~ 429 (689)
...+.+.|++++|.+.|+.+....+ . ..-.++.+|.+.+++++|...|++..+. .|+. .-+...+.+.+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHHHHhh
Confidence 3445567888888888888765222 1 1234567778888888888888888874 3432 233333333331
Q ss_pred --cC---------------c---HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHH
Q 036237 430 --AG---------------L---VNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWM 489 (689)
Q Consensus 430 --~g---------------~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 489 (689)
.+ + ..+|...|+.++ +-|-...-..+|...+..+..+--.. -.
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li----------------~~yP~S~ya~~A~~rl~~l~~~la~~-e~ 179 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV----------------RGYPNSQYTTDATKRLVFLKDRLAKY-EL 179 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHH----------------HHCcCChhHHHHHHHHHHHHHHHHHH-HH
Confidence 10 1 123334444444 33333333445544444332000000 01
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCCC---chhHHHHHHHHHhcCCcchHHHHHHHHH
Q 036237 490 SLLSGARNHGNKDIGEYAANNLIKVAPDT---IGCYVVLSNIYAAAGQWDKVSEVREMMK 546 (689)
Q Consensus 490 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~L~~~~~~~g~~~~A~~~~~~m~ 546 (689)
.+..-|.+.|.+..|..-++.+++--|+. +.+...+..+|.+.|..++|..+...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 33445788899999999999999977765 4567788999999999999998887654
No 196
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.92 E-value=0.012 Score=47.58 Aligned_cols=81 Identities=14% Similarity=0.158 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccC--------cHHHHHHHHHHhHHhcCCCCChh
Q 036237 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGM-KPTAITFIGVLNACSHAG--------LVNDGRRYFNMMINDYGIEPTIE 454 (689)
Q Consensus 384 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~~~~~~~~~p~~~ 454 (689)
+-...|..+...+++...-.+|+.+++.|+ -|+..+|+.++.+..+.. ++-+.+.+|+.|.. .+++|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~-~~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILS-NKLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHH-hccCCcHH
Confidence 334456666777999999999999999999 899999999998876532 45567888999984 58999999
Q ss_pred HHHHHHHHHHh
Q 036237 455 HYGCLVDILCR 465 (689)
Q Consensus 455 ~~~~li~~~~~ 465 (689)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99999887764
No 197
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.91 E-value=0.0092 Score=54.65 Aligned_cols=97 Identities=14% Similarity=0.187 Sum_probs=76.5
Q ss_pred HHHHHhc--CCCChhhHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-------------
Q 036237 371 LTVFRAI--SKKKVGHWTAMIVGLGMH-----GMATQALDLFNKMCRMGMKPTAITFIGVLNACSHA------------- 430 (689)
Q Consensus 371 ~~~~~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~------------- 430 (689)
...|+.. ..++-.+|..++..|.+. |..+=....++.|.+.|+.-|..+|+.||+.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4455555 456777777788777654 67777778888999999999999999999887652
Q ss_pred ---CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 036237 431 ---GLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGY 468 (689)
Q Consensus 431 ---g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 468 (689)
.+-+-|++++++|. ++|+-||.+++..|++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME-~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQME-NNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHH-HcCCCCcHHHHHHHHHHhccccH
Confidence 23567899999998 67999999999999999987775
No 198
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.83 E-value=0.013 Score=60.66 Aligned_cols=69 Identities=16% Similarity=0.136 Sum_probs=32.5
Q ss_pred HHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHH
Q 036237 92 LLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVL 160 (689)
Q Consensus 92 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 160 (689)
++++.|.+.|..+.+++++..=...|+-||.+||+.|+..+.+.|++..|.++...|...+...+..++
T Consensus 108 a~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~ 176 (429)
T PF10037_consen 108 ALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQ 176 (429)
T ss_pred HHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHH
Confidence 444444444444444444444444444444444444444444444444444444444444433333333
No 199
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.79 E-value=0.0032 Score=47.36 Aligned_cols=64 Identities=22% Similarity=0.216 Sum_probs=49.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhcCC
Q 036237 453 IEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHG-NKDIGEYAANNLIKVAP 516 (689)
Q Consensus 453 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 516 (689)
...|..+...+.+.|++++|+..|++. ...| +...|..+..++...| ++++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 456677777777777888877777765 3334 4568888888888888 68999999999998887
No 200
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.77 E-value=0.045 Score=54.35 Aligned_cols=126 Identities=11% Similarity=0.020 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHH-HHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhH
Q 036237 283 TWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSA-VAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMY 361 (689)
Q Consensus 283 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~ 361 (689)
+|-.++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..||+...+. +..+...+...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555555555555666666666665322 1122222222222 22234444456666555554 344555566666666
Q ss_pred HhcCCHHHHHHHHHhcCCC------ChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036237 362 SKCGSIESALTVFRAISKK------KVGHWTAMIVGLGMHGMATQALDLFNKMCR 410 (689)
Q Consensus 362 ~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 410 (689)
.+.|+.+.|+.+|++.... -...|...+..=.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666666665541 123566666665666666666666666555
No 201
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.76 E-value=0.0053 Score=62.84 Aligned_cols=62 Identities=13% Similarity=0.081 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 036237 453 IEHYGCLVDILCRTGYLEEAKSTIESM-PMRPNF----VIWMSLLSGARNHGNKDIGEYAANNLIKV 514 (689)
Q Consensus 453 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 514 (689)
...++.+..+|.+.|++++|...|++. .+.|+. .+|..+..+|...|+.++|+..+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345555555555555555555555552 344442 23555555555555555555555555554
No 202
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.76 E-value=0.11 Score=54.93 Aligned_cols=55 Identities=16% Similarity=0.170 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcCChHHHHHH--HHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhh
Q 036237 125 LPCVIKGAARLGAIKEGKQI--HGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDA 182 (689)
Q Consensus 125 ~~~ll~~~~~~~~~~~a~~~--~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 182 (689)
++..=++|.+.++..--+-+ ++.+.+.|-.|+... +...++-.|++.+|.++|.+
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 44445566666555443333 345666675576554 34456667888888888764
No 203
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.74 E-value=0.053 Score=54.07 Aligned_cols=130 Identities=12% Similarity=0.043 Sum_probs=81.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHH----HHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHH---hcCC-CCChh
Q 036237 384 HWTAMIVGLGMHGMATQALDLFNK----MCRMGMKP-TAITFIGVLNACSHAGLVNDGRRYFNMMIN---DYGI-EPTIE 454 (689)
Q Consensus 384 ~~~~li~~~~~~g~~~~A~~l~~~----m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~---~~~~-~p~~~ 454 (689)
.|..|...|.-.|+++.|+..-+. .++.|-+. ....+..+.+++.-.|.++.|.+.|+.... +.|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455555556666777777665433 22223221 123566677777777888888887775431 1111 11234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-------C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 036237 455 HYGCLVDILCRTGYLEEAKSTIESM-------P-MRPNFVIWMSLLSGARNHGNKDIGEYAANNLIK 513 (689)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~~-------~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 513 (689)
...+|...|.-...+++|+.++.+- . .--....+.+|..++...|..+.|...++..++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4556777777777788888777653 1 113456788899999999999999988887766
No 204
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.74 E-value=1.2 Score=48.44 Aligned_cols=82 Identities=12% Similarity=0.108 Sum_probs=36.9
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCCC---eehHHHHHHHHHhCCC---hHHHHHHHhhCCC--CCcchHHHHHHHHHhCCC
Q 036237 163 LVSMYAKFGEIDLGRRVFDAMDDKD---LVSWNCLIDGYVKKGE---VEVAMKLFDEMPD--RDLFSWTCLVDGFSKCGK 234 (689)
Q Consensus 163 li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~---~~~A~~~~~~m~~--~d~~~~~~li~~~~~~g~ 234 (689)
+|+-+...+.+..|.++-..+..|- ...+.....-+.+..+ -+-+..+-+++.. .+..+|..+..-....|+
T Consensus 443 vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR 522 (829)
T KOG2280|consen 443 VIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGR 522 (829)
T ss_pred hhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCc
Confidence 3444445555555555555554432 2233333444444321 1112222222222 244555555555555666
Q ss_pred hHHHHHHHhh
Q 036237 235 VEIAREIFYR 244 (689)
Q Consensus 235 ~~~A~~~~~~ 244 (689)
.+.|..+++.
T Consensus 523 ~~LA~kLle~ 532 (829)
T KOG2280|consen 523 FELARKLLEL 532 (829)
T ss_pred HHHHHHHHhc
Confidence 6666555543
No 205
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.68 E-value=0.18 Score=44.87 Aligned_cols=125 Identities=12% Similarity=0.094 Sum_probs=75.3
Q ss_pred ccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHH
Q 036237 348 VVDGVLGTLLIQMYSKCGSIESALTVFRAISK----KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT---AITF 420 (689)
Q Consensus 348 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~ 420 (689)
.|++..--.|.......|+..+|...|++... .|....-.+..+....+++..|...++.+.+.. |+ ..+.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDGH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCch
Confidence 34444444556666666666666666665543 355555555566666677777777777766532 32 1233
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 036237 421 IGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIE 477 (689)
Q Consensus 421 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 477 (689)
..+..++...|...+|+..|+... ..-|+...-......+.+.|+.++|..-+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~---~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAI---SYYPGPQARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHH---HhCCCHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 445566677777777777777776 344665555555666777777776655443
No 206
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.66 E-value=0.026 Score=58.49 Aligned_cols=116 Identities=10% Similarity=-0.012 Sum_probs=58.7
Q ss_pred cChhhHHHHHHHHHcccchhhHHHHHHHHHHh--CCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC----CChhhHHH
Q 036237 314 PNDATLVSALSAVAGLAVLNKGRWMHSYIVKN--GFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK----KKVGHWTA 387 (689)
Q Consensus 314 p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~ 387 (689)
.+...+-.+++.+....+++.+..++-..... ....-..+..++|..|.+.|..+++..+++.=.. +|..++|.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 34444444555555555555555544444332 1112233334555555555555555555544332 45555555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 036237 388 MIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSH 429 (689)
Q Consensus 388 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 429 (689)
|+..+.+.|++..|.++..+|...+...+..|+...+.+|.+
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 555555566666666665555555555555555555544443
No 207
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.65 E-value=0.013 Score=57.23 Aligned_cols=93 Identities=17% Similarity=0.189 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC---chhHHHHH
Q 036237 455 HYGCLVDILCRTGYLEEAKSTIESM-PMRPN----FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDT---IGCYVVLS 526 (689)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~L~ 526 (689)
.|..-+..+.+.|++++|...|+.. ...|+ ...+.-+...+...|+++.|...|+++++..|++ +.++..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3444444445556666666666554 12232 2344556666666777777777777777665553 34455556
Q ss_pred HHHHhcCCcchHHHHHHHHHh
Q 036237 527 NIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 527 ~~~~~~g~~~~A~~~~~~m~~ 547 (689)
.+|...|++++|..+++.+.+
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 667677777777777776654
No 208
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.64 E-value=0.027 Score=47.41 Aligned_cols=85 Identities=19% Similarity=0.039 Sum_probs=48.9
Q ss_pred HHHHHhcCCHHHHHHHHHhC---CCCC-C-HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC---CchhHHHHHHHHHh
Q 036237 460 VDILCRTGYLEEAKSTIESM---PMRP-N-FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPD---TIGCYVVLSNIYAA 531 (689)
Q Consensus 460 i~~~~~~g~~~~A~~~~~~~---~~~p-~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~L~~~~~~ 531 (689)
..++-..|+.++|..++++. +... + ...+-.+.+.+...|++++|..++++.+...|+ +......++.++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 34444555555555555543 1111 1 224455666666677777777777776666565 44455556666677
Q ss_pred cCCcchHHHHHHH
Q 036237 532 AGQWDKVSEVREM 544 (689)
Q Consensus 532 ~g~~~~A~~~~~~ 544 (689)
.|+.++|.+.+-.
T Consensus 88 ~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 88 LGRPKEALEWLLE 100 (120)
T ss_pred CCCHHHHHHHHHH
Confidence 7777777666543
No 209
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.63 E-value=0.0036 Score=42.12 Aligned_cols=42 Identities=21% Similarity=0.404 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHH
Q 036237 486 VIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSN 527 (689)
Q Consensus 486 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~ 527 (689)
.+|..+..++...|++++|+++++++++.+|+++..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467888999999999999999999999999999988877754
No 210
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.53 E-value=0.053 Score=45.62 Aligned_cols=59 Identities=17% Similarity=0.167 Sum_probs=36.0
Q ss_pred HHHHHHHcCChHHHHHHHHHhccCCCCcCh--hhHHHHHHHHHcccchhhHHHHHHHHHHh
Q 036237 287 MIAGYELNGRFMEALELLETMLIGDVLPND--ATLVSALSAVAGLAVLNKGRWMHSYIVKN 345 (689)
Q Consensus 287 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 345 (689)
+..++-..|+.++|+.+|++.+..|...+. ..+..+.+.+...|++++|..+++.....
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445666778888888888888777655432 23334445555556666666665555443
No 211
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.50 E-value=0.016 Score=53.14 Aligned_cols=101 Identities=8% Similarity=-0.048 Sum_probs=64.5
Q ss_pred CCChhhHHHHHHHHHh-----CCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHh----------------cCChHHHH
Q 036237 84 HPSLVLYNLLIKCYVF-----NQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAAR----------------LGAIKEGK 142 (689)
Q Consensus 84 ~~~~~~~~~ll~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----------------~~~~~~a~ 142 (689)
.+|..+|..++..+.+ .|..+=....+..|.+-|+.-|..+|+.||..+=+ -.+-+-|.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 4555555555555543 24444455555666666666666666666665432 12356788
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCh-HHHHHHHhhCC
Q 036237 143 QIHGLVFKLGFGFDKFVLSSLVSMYAKFGEI-DLGRRVFDAMD 184 (689)
Q Consensus 143 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~ 184 (689)
.++++|...|+-||..++..|++.+++.+.. .+..++.-.|+
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp 166 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP 166 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999776642 33444433443
No 212
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.41 E-value=0.041 Score=48.66 Aligned_cols=68 Identities=18% Similarity=0.212 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHH-----hCCCccCC
Q 036237 487 IWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMK-----KRGFRKDP 554 (689)
Q Consensus 487 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~ 554 (689)
....++..+...|+++.|...+++++..+|-+-..|..|+.+|...|+..+|.++++++. +-|+.|.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 456677778889999999999999999999999999999999999999999999999874 45776554
No 213
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.41 E-value=1.4 Score=45.17 Aligned_cols=72 Identities=17% Similarity=0.160 Sum_probs=57.5
Q ss_pred HHHHHhCCCCC----CHHHHHHHHHH--HHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHH
Q 036237 473 KSTIESMPMRP----NFVIWMSLLSG--ARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMM 545 (689)
Q Consensus 473 ~~~~~~~~~~p----~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m 545 (689)
..++++.++.| +...-|.|..| +..+|++..+.-...-+.++.| ++.+|..++-.+....++++|..++..+
T Consensus 444 e~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 444 EDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 34455555544 44455666666 5678999999999999999999 8899999999999999999999999754
No 214
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.031 Score=56.02 Aligned_cols=84 Identities=12% Similarity=0.207 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCCcccEEEECCE
Q 036237 485 FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGV 564 (689)
Q Consensus 485 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~ 564 (689)
..+++.|..++.+.+++..|+....+.++++|+|+.+++.=+.+|...|.++.|+..|+++.+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~---------------- 320 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL---------------- 320 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh----------------
Confidence 4467788888999999999999999999999999999999999999999999999999998862
Q ss_pred EEEEeeCCCCCcChHHHHHHHHHHHHHHHH
Q 036237 565 LHEFVVGDKSHPQTDEIHSKLSEMRNKLKA 594 (689)
Q Consensus 565 ~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~ 594 (689)
.|..+.|...|..+.+++++
T Consensus 321 ----------~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 321 ----------EPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred ----------CCCcHHHHHHHHHHHHHHHH
Confidence 24456666666666666654
No 215
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.83 Score=46.11 Aligned_cols=113 Identities=12% Similarity=0.031 Sum_probs=69.2
Q ss_pred cCCHHHHHHHHHhcCCCChh---------------hHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHH
Q 036237 364 CGSIESALTVFRAISKKKVG---------------HWTAMIVGLGMHGMATQALDLFNKMCRM---GMKPTAITFIGVLN 425 (689)
Q Consensus 364 ~g~~~~A~~~~~~~~~~~~~---------------~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~ll~ 425 (689)
.++.+.|...|++...-|+. .|..-..-..+.|++.+|.+.|.+.+.. .++|+...|.....
T Consensus 216 ~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~ 295 (486)
T KOG0550|consen 216 NDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRAL 295 (486)
T ss_pred ccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHh
Confidence 45566666666655542221 2333344566788888888888887762 23334445666666
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 036237 426 ACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESM 479 (689)
Q Consensus 426 a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~ 479 (689)
+..+.|+.++|+.--+... .+.|. +..|-.-..++.-.+.|++|.+-+++.
T Consensus 296 v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 296 VNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred hhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888888777666 34443 233333334555667788887777764
No 216
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.27 E-value=0.017 Score=43.94 Aligned_cols=63 Identities=16% Similarity=0.230 Sum_probs=50.2
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHH
Q 036237 461 DILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYV 523 (689)
Q Consensus 461 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 523 (689)
..|.+.+++++|.+.++.+ ...| ++..|......+...|+++.|...++++++..|+++....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 5677888888888888876 3444 5567788888889999999999999999999998765443
No 217
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.27 E-value=0.047 Score=53.29 Aligned_cols=101 Identities=13% Similarity=0.088 Sum_probs=68.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC----CHHHHHHHH
Q 036237 419 TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESMP-MRP----NFVIWMSLL 492 (689)
Q Consensus 419 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p----~~~~~~~ll 492 (689)
.|...+......|++++|...|+.+.+.+.-.+- ...+-.+...|...|++++|...|+.+- ..| ....+..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3444444445567777777777777754311110 2456677788888888888888877761 112 244555666
Q ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCc
Q 036237 493 SGARNHGNKDIGEYAANNLIKVAPDTI 519 (689)
Q Consensus 493 ~~~~~~g~~~~a~~~~~~~~~~~p~~~ 519 (689)
..+...|+.+.|...++++++..|++.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 777788999999999999999999764
No 218
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.25 E-value=2.4 Score=46.27 Aligned_cols=114 Identities=11% Similarity=0.089 Sum_probs=85.8
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 036237 414 KPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLS 493 (689)
Q Consensus 414 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~ 493 (689)
.-...|.+--+.-+...|...+|.++-.+.+ .||...|-.=+.+++..++|++-+++-+++. .+.-|.-+..
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe 752 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVE 752 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHH
Confidence 3344456666667778888888888776654 4888888888899999999999888888764 2556777888
Q ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHH
Q 036237 494 GARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVRE 543 (689)
Q Consensus 494 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~ 543 (689)
+|.+.|+.++|.+.+-+.-.+ .-...+|.+.|++.+|.++--
T Consensus 753 ~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHHH
Confidence 999999999998876654322 256778888999988877643
No 219
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.09 E-value=0.42 Score=45.09 Aligned_cols=132 Identities=10% Similarity=-0.030 Sum_probs=82.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHH-----HH
Q 036237 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYG-----CL 459 (689)
Q Consensus 385 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~l 459 (689)
-+.++..+.-.|.+.-.+.++++.++...+.+......|.+.-.+.|+.+.|..+|+...+..+ ..+....+ ..
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHhhh
Confidence 3556666666777888888888888765455666677777777888888888888887764422 22222222 23
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 036237 460 VDILCRTGYLEEAKSTIESMPMR--PNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPD 517 (689)
Q Consensus 460 i~~~~~~g~~~~A~~~~~~~~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 517 (689)
...|.-++++.+|...+++++.. .|+...|+-.-...-.|+...|++..+.+++..|.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 33455566667777777666422 24444444444445556677777777777776664
No 220
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.09 E-value=0.0097 Score=46.02 Aligned_cols=60 Identities=18% Similarity=0.206 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhc----C---CCCchhHHHHHHHHHhcCCcchHHHHHHHHH
Q 036237 487 IWMSLLSGARNHGNKDIGEYAANNLIKV----A---PDTIGCYVVLSNIYAAAGQWDKVSEVREMMK 546 (689)
Q Consensus 487 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~---p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~ 546 (689)
+++.+...+...|++++|+..+++++++ . |....++..++.+|...|++++|.+++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666666666666666666542 1 1124567777888888888888887777654
No 221
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.81 E-value=0.015 Score=45.02 Aligned_cols=59 Identities=15% Similarity=0.079 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 036237 455 HYGCLVDILCRTGYLEEAKSTIESM-------P-MRPN-FVIWMSLLSGARNHGNKDIGEYAANNLIK 513 (689)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 513 (689)
+|+.+...|.+.|++++|++.+++. + ..|+ ..++..+...+...|++++|+..++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444444455555555544444433 1 1122 34566666677777777777777776655
No 222
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.79 E-value=0.82 Score=38.39 Aligned_cols=138 Identities=15% Similarity=0.107 Sum_probs=77.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 036237 395 HGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKS 474 (689)
Q Consensus 395 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 474 (689)
.|..++..++..+.... .+..-++.++--....-+=+-..+.++.+-+-+.+ ..+|++.....
T Consensus 15 dG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDi--------------s~C~NlKrVi~ 77 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDI--------------SKCGNLKRVIE 77 (161)
T ss_dssp TT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-G--------------GG-S-THHHHH
T ss_pred hchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------hhhcchHHHHH
Confidence 46666667776666542 23333443333222222333334444444322211 23444444444
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCCCc
Q 036237 475 TIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFR 551 (689)
Q Consensus 475 ~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~~~ 551 (689)
.+-.+. .+......-++....+|.-+.-.+++..+.+-+..+|....-++++|.+.|+..++.+++.+.-++|++
T Consensus 78 C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 78 CYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 444443 244455666778889999999999999988655557889999999999999999999999999999875
No 223
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.74 E-value=1.8 Score=40.75 Aligned_cols=193 Identities=18% Similarity=0.174 Sum_probs=126.4
Q ss_pred hhHHhHHHhhHHhcCCHHHHHHHHHhcCC-----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036237 351 GVLGTLLIQMYSKCGSIESALTVFRAISK-----KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN 425 (689)
Q Consensus 351 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 425 (689)
..........+...+.+..+...+..... .....+..+...+...+++.++.+.+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 34555566666667777777666665532 3344566666667777777788888877776433321 12222222
Q ss_pred -HHhccCcHHHHHHHHHHhHHhcCCCC----ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHh
Q 036237 426 -ACSHAGLVNDGRRYFNMMINDYGIEP----TIEHYGCLVDILCRTGYLEEAKSTIESM-PMRPN--FVIWMSLLSGARN 497 (689)
Q Consensus 426 -a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~ll~~~~~ 497 (689)
.+...|+++.|...+..... ..| ....+......+...++.++|...+.+. ...++ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 67777888888888887752 222 2344444455567778888888888775 22333 5677777788888
Q ss_pred cCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 498 HGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 498 ~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
.++.+.|...+.......|.....+..+...+...|.++++...+.+...
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888888888888888886555666777777767778888877776654
No 224
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.70 E-value=0.85 Score=42.85 Aligned_cols=160 Identities=14% Similarity=0.150 Sum_probs=90.3
Q ss_pred hhHHhcCCHHHHHHHHHhcCC--CC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhc-
Q 036237 359 QMYSKCGSIESALTVFRAISK--KK----VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI--TFIGVLNACSH- 429 (689)
Q Consensus 359 ~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~- 429 (689)
..+...|++++|.+.|+.+.. |+ ....-.++.++.+.|++++|...|+++.+. -|+.. -+...+.+.+.
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHHH
Confidence 345566777777777777764 21 224556677788888888888888887763 34322 22222222221
Q ss_pred ------------cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHH--HHHHHHHH
Q 036237 430 ------------AGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVI--WMSLLSGA 495 (689)
Q Consensus 430 ------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~--~~~ll~~~ 495 (689)
.+...+|...|+.+ +.-|-......+|...+..+. +... -..+..-|
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~~~~l----------------i~~yP~S~y~~~A~~~l~~l~---~~la~~e~~ia~~Y 151 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEEFEEL----------------IKRYPNSEYAEEAKKRLAELR---NRLAEHELYIARFY 151 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHHHHHH----------------HHH-TTSTTHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HhCccchhcccChHHHHHHHHHHHHH----------------HHHCcCchHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 11223344444444 444444444555555444432 1111 11244557
Q ss_pred HhcCChHHHHHHHHHHhhcCCCCch---hHHHHHHHHHhcCCcchHH
Q 036237 496 RNHGNKDIGEYAANNLIKVAPDTIG---CYVVLSNIYAAAGQWDKVS 539 (689)
Q Consensus 496 ~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~L~~~~~~~g~~~~A~ 539 (689)
.+.|.+..|..-++.+++.-|+.+. +...|+.+|.+.|..+.+.
T Consensus 152 ~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 152 YKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 8889999999999999999887643 4677888899999887443
No 225
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.58 E-value=0.3 Score=48.14 Aligned_cols=163 Identities=9% Similarity=0.072 Sum_probs=102.4
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC--C--Chh
Q 036237 383 GHWTAMIVGLGMHGMATQALDLFNKMCRM-GMKPT---AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIE--P--TIE 454 (689)
Q Consensus 383 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~--p--~~~ 454 (689)
.+|-.+..++-+.-++.+++.+-+.-... |..|. .....++..|....+.++++++.|+...+-..-. | ...
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 35566666666666666666655543332 33332 1223345566667778888888888776322111 2 146
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-------CCCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCCC--
Q 036237 455 HYGCLVDILCRTGYLEEAKSTIESM-------PMRP-----NFVIWMSLLSGARNHGNKDIGEYAANNLIKV--APDT-- 518 (689)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~p~~-- 518 (689)
+|..|...|.+..++++|.-+..+. .++. ...+..-+.-+++..|.+..|.+..+++.++ ...|
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 7888889999999888887666554 2221 1122334556788889888888888887662 2223
Q ss_pred --chhHHHHHHHHHhcCCcchHHHHHHHH
Q 036237 519 --IGCYVVLSNIYAAAGQWDKVSEVREMM 545 (689)
Q Consensus 519 --~~~~~~L~~~~~~~g~~~~A~~~~~~m 545 (689)
......++++|...|+.+.|..-++..
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 334557889999999888887766653
No 226
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.32 E-value=4 Score=41.85 Aligned_cols=134 Identities=12% Similarity=0.068 Sum_probs=98.5
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhH-HHH
Q 036237 381 KVGHWTAMIVGLGMHGMATQALDLFNKMCRMG-MKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEH-YGC 458 (689)
Q Consensus 381 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~ 458 (689)
-...|...+..-.+..-.+.|..+|-+..+.| +.++...+++++.-++ .|+..-|..+|+.-... -||... -+-
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~k 471 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEK 471 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHH
Confidence 34567777777777777888889999988888 6677778888887655 46778888888876632 344433 345
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC--CCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 036237 459 LVDILCRTGYLEEAKSTIESMP--MRPN--FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDT 518 (689)
Q Consensus 459 li~~~~~~g~~~~A~~~~~~~~--~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 518 (689)
.+.-+.+.++-+.|..+|+..- +..+ ..+|..++.--..-|++..+..+-+++.++-|..
T Consensus 472 yl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 472 YLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 6677788888888999998541 2223 4578888888888888888888888888888864
No 227
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.13 E-value=2.7 Score=40.09 Aligned_cols=167 Identities=17% Similarity=0.219 Sum_probs=92.7
Q ss_pred HhcCCHHHHHHHHHhcCCCCh------hhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhc-----
Q 036237 362 SKCGSIESALTVFRAISKKKV------GHWTAMIVGLGMHGMATQALDLFNKMCRM-GMKPTAITFIGVLNACSH----- 429 (689)
Q Consensus 362 ~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~----- 429 (689)
.+.|++++|.+.|+.+..+.+ .+--.++-++.+.+++++|+..+++.... +-.|| .-|..-|.+++.
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLSYFFQID 123 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhccCC
Confidence 356777777777777765322 13334556667777888888877777663 22233 233333333331
Q ss_pred --cCcHH---HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCChH
Q 036237 430 --AGLVN---DGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIW--MSLLSGARNHGNKD 502 (689)
Q Consensus 430 --~g~~~---~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~--~~ll~~~~~~g~~~ 502 (689)
..+.. +|..-|+..+.++ |+. .--.+|..-+.... |.... ..+..-|.+.|.+.
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~ry---PnS-------------~Ya~dA~~~i~~~~---d~LA~~Em~IaryY~kr~~~~ 184 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQRY---PNS-------------RYAPDAKARIVKLN---DALAGHEMAIARYYLKRGAYV 184 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHHC---CCC-------------cchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhcChH
Confidence 11222 2222333333221 221 11112221111110 11111 23445578889999
Q ss_pred HHHHHHHHHhhcCCCCc---hhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 503 IGEYAANNLIKVAPDTI---GCYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 503 ~a~~~~~~~~~~~p~~~---~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
.|..-++.+++--|+.+ ..+..|.++|.+.|..++|...-+-+...
T Consensus 185 AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 185 AAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 99999999999766654 45667888899999999998887766543
No 228
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.11 E-value=0.28 Score=41.77 Aligned_cols=48 Identities=17% Similarity=0.299 Sum_probs=23.9
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 036237 413 MKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLV 460 (689)
Q Consensus 413 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 460 (689)
..|+..+..+++.+|+..|++..|.++.+...+.|+++-+..+|..|+
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll 95 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLL 95 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 344555555555555555555555555555555444444444444443
No 229
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.07 E-value=0.62 Score=43.77 Aligned_cols=51 Identities=18% Similarity=0.240 Sum_probs=28.9
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHH
Q 036237 423 VLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAK 473 (689)
Q Consensus 423 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~ 473 (689)
+..-|.+.|.+..|..-++.+++++.-.+. ......|+..|.+.|..+.|.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 345566677777777777777755422222 244556667777777766443
No 230
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.07 E-value=0.22 Score=41.57 Aligned_cols=90 Identities=17% Similarity=0.140 Sum_probs=68.3
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc----hhHHHHHHHHHhcCC
Q 036237 461 DILCRTGYLEEAKSTIESM-PMR-PNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTI----GCYVVLSNIYAAAGQ 534 (689)
Q Consensus 461 ~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~L~~~~~~~g~ 534 (689)
-+++..|++++|++.|.+. .+- .....||.-..+++-+|+.++|..-+++++++.-+.. .+|+.-+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3566778888888888765 222 3667888888899999999999999999988553322 246777888888999
Q ss_pred cchHHHHHHHHHhCCC
Q 036237 535 WDKVSEVREMMKKRGF 550 (689)
Q Consensus 535 ~~~A~~~~~~m~~~~~ 550 (689)
.++|+.-|+...+-|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999998988877664
No 231
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.06 E-value=0.13 Score=53.05 Aligned_cols=60 Identities=13% Similarity=0.061 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHhC
Q 036237 417 AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTI----EHYGCLVDILCRTGYLEEAKSTIESM 479 (689)
Q Consensus 417 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~ 479 (689)
...++.+..+|...|++++|+..|+..+ .+.|+. ..|..+..+|...|++++|.+.++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rAL---eL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETAL---ELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4467777778888888888888888777 355663 24777888888888888888877775
No 232
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.06 E-value=2.3 Score=39.89 Aligned_cols=88 Identities=14% Similarity=0.109 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHhh----cCCCCchh
Q 036237 454 EHYGCLVDILCRTGYLEEAKSTIESMP-------MRPNF-VIWMSLLSGARNHGNKDIGEYAANNLIK----VAPDTIGC 521 (689)
Q Consensus 454 ~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~p~~~~~ 521 (689)
..|......|.+..+++||-..|.+-. .-|+. ..+.+.+-.+....|+..|++.++.--+ ..|++..+
T Consensus 151 el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~ 230 (308)
T KOG1585|consen 151 ELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRS 230 (308)
T ss_pred HHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHH
Confidence 345555667777888888776665542 11232 2344555555666788888888887554 45667777
Q ss_pred HHHHHHHHHhcCCcchHHHHH
Q 036237 522 YVVLSNIYAAAGQWDKVSEVR 542 (689)
Q Consensus 522 ~~~L~~~~~~~g~~~~A~~~~ 542 (689)
...|+.+| ..|+.+++..+.
T Consensus 231 lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 231 LENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHh-ccCCHHHHHHHH
Confidence 77777776 456666655544
No 233
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.96 E-value=6.3 Score=42.16 Aligned_cols=419 Identities=12% Similarity=0.108 Sum_probs=228.5
Q ss_pred HHHhcccC-CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCccc-HHHHHHHHHhcCChHHHHHHHHHHHHhCC
Q 036237 76 SIFDRILQ-HPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFT-LPCVIKGAARLGAIKEGKQIHGLVFKLGF 153 (689)
Q Consensus 76 ~~f~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 153 (689)
+.++..+. .-+...|+.+|.---.....+.+...+..++.. .|..+- |.....-=.+.|..+.+.++|++.+. |+
T Consensus 33 ~~we~~~~~~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-ai 109 (577)
T KOG1258|consen 33 DYWEILSNDSLDFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AI 109 (577)
T ss_pred hHhhccccchhcccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hh
Confidence 33444432 345567888887666666667777778887754 454432 22222333467888889999998875 45
Q ss_pred CCchhHHHHHHHHHH-hcCChHHHHHHHhhCCC------CCeehHHHHHHHHHhCCChHHHHHHHhhCCCCCcchHHHHH
Q 036237 154 GFDKFVLSSLVSMYA-KFGEIDLGRRVFDAMDD------KDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLV 226 (689)
Q Consensus 154 ~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li 226 (689)
+..+..|........ ..|+.+..++.|+...+ .+...|-..|.--..++++.....++++..+-....|+...
T Consensus 110 p~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f 189 (577)
T KOG1258|consen 110 PLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHF 189 (577)
T ss_pred hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHH
Confidence 667777776665544 45677777777776653 34556888887777778888888888887764444444333
Q ss_pred HHHHh---CC------ChHHHHHHHhhcCcCCcchHHHHHHHHHhcC-CHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC
Q 036237 227 DGFSK---CG------KVEIAREIFYRMPNRNLVSWNAMINGYMKAG-DVDSACELFDDMEIRDLITWNSMIAGYELNGR 296 (689)
Q Consensus 227 ~~~~~---~g------~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 296 (689)
.-|.+ .. ..+++.++-....... .-...+ ..+.-....+....+. +.
T Consensus 190 ~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~---------~~~~~~~~~e~~~~~v~~~~~~s--------------~~ 246 (577)
T KOG1258|consen 190 DRFKQLLNQNEEKILLSIDELIQLRSDVAERS---------KITHSQEPLEELEIGVKDSTDPS--------------KS 246 (577)
T ss_pred HHHHHHHhcCChhhhcCHHHHHHHhhhHHhhh---------hcccccChhHHHHHHHhhccCcc--------------ch
Confidence 33221 11 1111111111100000 000000 0001111111111110 00
Q ss_pred hHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhC-------CccchhHHhHHHhhHHhcCCHHH
Q 036237 297 FMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNG-------FVVDGVLGTLLIQMYSKCGSIES 369 (689)
Q Consensus 297 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g-------~~~~~~~~~~li~~~~~~g~~~~ 369 (689)
.+++.....+... .--..+-........+..++.-++.- ..++..+|..-++--.+.|+.+.
T Consensus 247 l~~~~~~l~~~~~-----------~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~ 315 (577)
T KOG1258|consen 247 LTEEKTILKRIVS-----------IHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSR 315 (577)
T ss_pred hhHHHHHHHHHHH-----------HHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHH
Confidence 0111100000000 00000000111111112222222211 12345667777777788899999
Q ss_pred HHHHHHhcCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 036237 370 ALTVFRAISKK---KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIND 446 (689)
Q Consensus 370 A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 446 (689)
+.-.|++..-+ -...|--.+.-....|+.+-|-.++....+--++-...+-..-..-+-..|+++.|..+++.+.++
T Consensus 316 ~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e 395 (577)
T KOG1258|consen 316 VFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESE 395 (577)
T ss_pred HHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh
Confidence 99888887654 233555555555555888888877776665433322222222223355678999999999999875
Q ss_pred cCCCCCh-hHHHHHHHHHHhcCCHHHHH---HHHHhC-CCCCCHHHHHHHHHH-----HHhcCChHHHHHHHHHHhhcCC
Q 036237 447 YGIEPTI-EHYGCLVDILCRTGYLEEAK---STIESM-PMRPNFVIWMSLLSG-----ARNHGNKDIGEYAANNLIKVAP 516 (689)
Q Consensus 447 ~~~~p~~-~~~~~li~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~ll~~-----~~~~g~~~~a~~~~~~~~~~~p 516 (689)
. |+. ..-.--+....+.|..+.+. +++... +.+-+..+...+.-- +...++.+.|..++.++.+..|
T Consensus 396 --~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~ 472 (577)
T KOG1258|consen 396 --Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILP 472 (577)
T ss_pred --C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCC
Confidence 3 663 33344566778899999888 555443 222233333333222 3455899999999999999999
Q ss_pred CCchhHHHHHHHHHhcCC
Q 036237 517 DTIGCYVVLSNIYAAAGQ 534 (689)
Q Consensus 517 ~~~~~~~~L~~~~~~~g~ 534 (689)
++...|..+++.....+.
T Consensus 473 ~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 473 DCKVLYLELIRFELIQPS 490 (577)
T ss_pred ccHHHHHHHHHHHHhCCc
Confidence 998899988888766553
No 234
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.80 E-value=0.32 Score=41.38 Aligned_cols=51 Identities=20% Similarity=0.171 Sum_probs=32.9
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhc
Q 036237 448 GIEPTIEHYGCLVDILCRTGYLEEAKSTIESM----PMRPNFVIWMSLLSGARNH 498 (689)
Q Consensus 448 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~~~~ 498 (689)
.+.|+..+..+++.+|+..|++..|.++++.. +++-+..+|..|+.-+...
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 45566777777777777777777777776654 3444566676666654443
No 235
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.77 E-value=0.23 Score=47.17 Aligned_cols=100 Identities=17% Similarity=0.170 Sum_probs=81.2
Q ss_pred HHHHHHHhcC--CCChhhHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----------
Q 036237 369 SALTVFRAIS--KKKVGHWTAMIVGLGMH-----GMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAG---------- 431 (689)
Q Consensus 369 ~A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g---------- 431 (689)
..+..|..+. ++|-.+|-+++..|..+ +..+=....++.|.+.|+.-|..+|+.||+.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3456677776 57888898888888764 566667777899999999999999999999876533
Q ss_pred ------cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCH
Q 036237 432 ------LVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYL 469 (689)
Q Consensus 432 ------~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 469 (689)
.-+=++.++++|. .+|+.||.++-..|+.++++.|..
T Consensus 132 F~HYP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HhhCchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhcccccc
Confidence 2244789999998 679999999999999999999864
No 236
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.66 E-value=1.2 Score=43.30 Aligned_cols=101 Identities=16% Similarity=0.077 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC---CHHHHHHHHHhC-CCCC-CHHHHHHH
Q 036237 417 AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTG---YLEEAKSTIESM-PMRP-NFVIWMSL 491 (689)
Q Consensus 417 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~-~~~p-~~~~~~~l 491 (689)
...|..|..+|...|+.+.|...|....+- -.+++..+..+..++.... .-.++..+|+++ ..+| |+.+..-|
T Consensus 156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 156 AEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred chhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 445666666666666666666666655531 1123444444544443222 244566666665 3344 44455666
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCc
Q 036237 492 LSGARNHGNKDIGEYAANNLIKVAPDTI 519 (689)
Q Consensus 492 l~~~~~~g~~~~a~~~~~~~~~~~p~~~ 519 (689)
...+...|++.+|...++.+++..|.+.
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 6677888888888888888888766553
No 237
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.65 E-value=0.22 Score=47.61 Aligned_cols=57 Identities=16% Similarity=0.171 Sum_probs=26.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCC---CchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 491 LLSGARNHGNKDIGEYAANNLIKVAPD---TIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 491 ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
|..++...|+++.|...|..+.+-.|+ -|..+.-|+.+..+.|+.++|...++++.+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 344444444444444444444443322 234444555555555555555555554443
No 238
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.60 E-value=0.7 Score=39.83 Aligned_cols=60 Identities=17% Similarity=0.185 Sum_probs=40.8
Q ss_pred HHHHhcCCHHHHHHHHHhCC----CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCch
Q 036237 461 DILCRTGYLEEAKSTIESMP----MRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIG 520 (689)
Q Consensus 461 ~~~~~~g~~~~A~~~~~~~~----~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 520 (689)
....+.|++++|.+.|+.+. ..| ....-..|+.++.+.+++++|...+++.++++|.++.
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 33446677777777776652 222 3345566778888888888888888888888887653
No 239
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.58 E-value=2.6 Score=36.70 Aligned_cols=85 Identities=15% Similarity=0.128 Sum_probs=46.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCeehHHHHHHHHHhCCCh
Q 036237 125 LPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEV 204 (689)
Q Consensus 125 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~ 204 (689)
...++..+...+.......+++.+++.+ ..+....|.++..|++.+ .+.....++. ..+......+++.|-+.+.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcH
Confidence 3455666666666777777777777665 356667777777777653 2333344331 12233333444555555554
Q ss_pred HHHHHHHhh
Q 036237 205 EVAMKLFDE 213 (689)
Q Consensus 205 ~~A~~~~~~ 213 (689)
+++.-++.+
T Consensus 86 ~~~~~l~~k 94 (140)
T smart00299 86 EEAVELYKK 94 (140)
T ss_pred HHHHHHHHh
Confidence 444444443
No 240
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.57 E-value=0.33 Score=48.90 Aligned_cols=137 Identities=10% Similarity=0.028 Sum_probs=95.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 036237 389 IVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGY 468 (689)
Q Consensus 389 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 468 (689)
...|.+.|++..|...|++.... |. +...-+.++..... ..-...+..|.-.|.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~---------~~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAE---------ALKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHH---------HHHHHHhhHHHHHHHhhhh
Confidence 45677778888888777776541 00 00111112211111 1223456778888889999
Q ss_pred HHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchH-HHHHHHH
Q 036237 469 LEEAKSTIESM-PM-RPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKV-SEVREMM 545 (689)
Q Consensus 469 ~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A-~~~~~~m 545 (689)
+.+|+....+. .. ++|+-..---..+|...|+++.|+..|+++++++|+|-.+-..|+.+-.+..+..+. .+++..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888775 33 346667777788999999999999999999999999988888888877766655544 7788888
Q ss_pred Hh
Q 036237 546 KK 547 (689)
Q Consensus 546 ~~ 547 (689)
-.
T Consensus 353 F~ 354 (397)
T KOG0543|consen 353 FA 354 (397)
T ss_pred hh
Confidence 64
No 241
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.47 E-value=0.073 Score=33.19 Aligned_cols=32 Identities=13% Similarity=0.121 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 036237 486 VIWMSLLSGARNHGNKDIGEYAANNLIKVAPD 517 (689)
Q Consensus 486 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 517 (689)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46888888899999999999999999999886
No 242
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.46 E-value=1.9 Score=45.61 Aligned_cols=130 Identities=15% Similarity=0.095 Sum_probs=74.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHhhcCcCCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHH
Q 036237 221 SWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEA 300 (689)
Q Consensus 221 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 300 (689)
-.+.++.-+-+.|..+.|+++-.. -..-.+...++|+++.|.++-++.. +...|..|.....+.|+++-|
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D--------~~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lA 366 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTD--------PDHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELA 366 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS---------HHHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCC--------hHHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHH
Confidence 355666666667777777666332 1334456667778887777766554 556788888888888888888
Q ss_pred HHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHH
Q 036237 301 LELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFR 375 (689)
Q Consensus 301 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 375 (689)
.+.|.+... +..++-.+...|+.+.-.++.......|- ++....++.-.|++++..+++.
T Consensus 367 e~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 367 EECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 888877642 34445555556666555555555554441 2223333334455555544443
No 243
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.41 E-value=4.5 Score=37.99 Aligned_cols=197 Identities=16% Similarity=0.069 Sum_probs=131.3
Q ss_pred hhHHHHHHHHHcccchhhHHHHHHHHHHh-CCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCC--C-hhhHHHHHH-H
Q 036237 317 ATLVSALSAVAGLAVLNKGRWMHSYIVKN-GFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKK--K-VGHWTAMIV-G 391 (689)
Q Consensus 317 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~-~~~~~~li~-~ 391 (689)
..+......+...+.+..+...+...... ........+..+...+...+.+..+.+.+...... + ...+..... .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 34444444455555555555555444432 22334455555666666677777888877776652 2 122333333 6
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhc
Q 036237 392 LGMHGMATQALDLFNKMCRMGMKP----TAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEP-TIEHYGCLVDILCRT 466 (689)
Q Consensus 392 ~~~~g~~~~A~~l~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~ 466 (689)
+...|++++|...|.+... ..| ....+......+...++.+.+...+..... .... ....+..+...+...
T Consensus 140 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 140 LYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHHHc
Confidence 8889999999999999865 343 233444444556778899999999998884 2333 367788888999999
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 036237 467 GYLEEAKSTIESM-PMRPN-FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPD 517 (689)
Q Consensus 467 g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 517 (689)
+.+++|...+... ...|+ ...+..+...+...++.+.+...+.+..+..|.
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9999999998876 33444 455666666666777899999999999998886
No 244
>PRK11906 transcriptional regulator; Provisional
Probab=94.41 E-value=0.66 Score=48.06 Aligned_cols=63 Identities=6% Similarity=-0.085 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHH
Q 036237 484 NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMK 546 (689)
Q Consensus 484 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~ 546 (689)
|+.....+..+....++.+.|...|+++..++|+.+.++...+....-.|+.++|.+.+++..
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 555555555555555666777777777777777666666666666666777777766666533
No 245
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.36 E-value=0.4 Score=42.28 Aligned_cols=70 Identities=19% Similarity=0.235 Sum_probs=38.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhH----HhcCCCCChhH
Q 036237 385 WTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMI----NDYGIEPTIEH 455 (689)
Q Consensus 385 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~----~~~~~~p~~~~ 455 (689)
...++..+...|++++|+.+.+.+.... +-|...+..++.++...|+..+|.+.|+.+. ++.|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3445555666777777777777766632 2244566677777777777777777766553 24566676544
No 246
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.32 E-value=3.4 Score=43.12 Aligned_cols=97 Identities=11% Similarity=0.174 Sum_probs=46.1
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHH--HHHHHHHHHHhc
Q 036237 423 VLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPM--RPNFV--IWMSLLSGARNH 498 (689)
Q Consensus 423 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~p~~~--~~~~ll~~~~~~ 498 (689)
+...+.+.|+.++|.+.|.+|.+++.......+...|+..|...+.+.++..++.+... -|... .|++.+--.+..
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav 344 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAV 344 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhh
Confidence 33344455555555555555553322111233444555555555666666555555431 12222 333332222222
Q ss_pred CC---------------hHHHHHHHHHHhhcCCCCc
Q 036237 499 GN---------------KDIGEYAANNLIKVAPDTI 519 (689)
Q Consensus 499 g~---------------~~~a~~~~~~~~~~~p~~~ 519 (689)
++ -..|.++..++++.+|.-|
T Consensus 345 ~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 345 GDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred ccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 22 1235677888888888654
No 247
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.29 E-value=7.4 Score=40.03 Aligned_cols=427 Identities=13% Similarity=0.085 Sum_probs=223.0
Q ss_pred CCCchHHHHHhhcccccCCCCHHHHHHHHhcccCCCCh---hhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHH
Q 036237 50 IYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPSL---VLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLP 126 (689)
Q Consensus 50 ~~~~~~~~~ll~~~~~~~~g~~~~A~~~f~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 126 (689)
+.|...|-.||.-|.. .|..++-+++++++. .|-+ .+|..-+++-....+++....+|.+-+.... +...|.
T Consensus 39 PtnI~S~fqLiq~~~t--q~s~~~~re~yeq~~-~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ldLW~ 113 (660)
T COG5107 39 PTNILSYFQLIQYLET--QESMDAEREMYEQLS-SPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLDLWM 113 (660)
T ss_pred chhHHHHHHHHHHHhh--hhhHHHHHHHHHHhc-CCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHhHHH
Confidence 5577889999999999 999999999999998 5544 3688888888888899999999999887643 455565
Q ss_pred HHHHHHHhcCChH------HHHHHHHHHHH-hCCCCch-hHHHHHHHHHH---hcC------ChHHHHHHHhhCCC-C--
Q 036237 127 CVIKGAARLGAIK------EGKQIHGLVFK-LGFGFDK-FVLSSLVSMYA---KFG------EIDLGRRVFDAMDD-K-- 186 (689)
Q Consensus 127 ~ll~~~~~~~~~~------~a~~~~~~~~~-~g~~~~~-~~~~~li~~~~---~~g------~~~~A~~~~~~m~~-~-- 186 (689)
..+.-..+.+..- .-.+.++..+. .+++|-. ..|+..+...- ..| ++|..++.+.++.. |
T Consensus 114 lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~ 193 (660)
T COG5107 114 LYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMG 193 (660)
T ss_pred HHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccc
Confidence 5555444443222 12244555444 2444433 34555444332 122 34556666666553 1
Q ss_pred -------CeehHHHHHHHH-HhC--C----ChHHHHHHHhhCCC-------C---Ccc-----------hHHHHHHHHHh
Q 036237 187 -------DLVSWNCLIDGY-VKK--G----EVEVAMKLFDEMPD-------R---DLF-----------SWTCLVDGFSK 231 (689)
Q Consensus 187 -------~~~~~~~li~~~-~~~--g----~~~~A~~~~~~m~~-------~---d~~-----------~~~~li~~~~~ 231 (689)
|-..|..=+... ++. | -+-.|...+++... . +.. -|-..|..=..
T Consensus 194 nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~e 273 (660)
T COG5107 194 NLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEME 273 (660)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhc
Confidence 111111111111 100 1 12234444443321 0 111 13333433222
Q ss_pred CC-----C-hH-HHHHHHhhcCc---CCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHH-HHHHHHHcCChHHH
Q 036237 232 CG-----K-VE-IAREIFYRMPN---RNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNS-MIAGYELNGRFMEA 300 (689)
Q Consensus 232 ~g-----~-~~-~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A 300 (689)
.| + .. ...-+|.+... -.+.+|----.-+...++-+.|.+....-..-.+ +.+. +-..|.-..+.++.
T Consensus 274 n~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sp-sL~~~lse~yel~nd~e~v 352 (660)
T COG5107 274 NGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSP-SLTMFLSEYYELVNDEEAV 352 (660)
T ss_pred CCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCC-chheeHHHHHhhcccHHHH
Confidence 11 1 11 11122333222 1133343333444556677777776655332111 1111 12223333333333
Q ss_pred HHHHHHhccCCCCcChhhHHHHHHHHH---cccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhc
Q 036237 301 LELLETMLIGDVLPNDATLVSALSAVA---GLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAI 377 (689)
Q Consensus 301 ~~~~~~m~~~g~~p~~~t~~~ll~a~~---~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 377 (689)
...|+...+. ...--+.+.+=+ ..|+++.-.++. .+. ...-..++..+++.-.+..-++.|+.+|-++
T Consensus 353 ~~~fdk~~q~-----L~r~ys~~~s~~~s~~D~N~e~~~Ell---~kr-~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~ 423 (660)
T COG5107 353 YGCFDKCTQD-----LKRKYSMGESESASKVDNNFEYSKELL---LKR-INKLTFVFCVHLNYVLRKRGLEAARKLFIKL 423 (660)
T ss_pred hhhHHHHHHH-----HHHHHhhhhhhhhccccCCccccHHHH---HHH-HhhhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3333332210 000000000000 012232221111 111 1123456666777777777788888888777
Q ss_pred CC-----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHhccCcHHHHHHHHHHhHHhcCCCC
Q 036237 378 SK-----KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITF-IGVLNACSHAGLVNDGRRYFNMMINDYGIEP 451 (689)
Q Consensus 378 ~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 451 (689)
.+ +++..++++|.-++ .|++.-|..+|+--.. .-||...| .-.+.-+...++-+.|+.+|+..+. .+..
T Consensus 424 rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~--~f~d~~~y~~kyl~fLi~inde~naraLFetsv~--r~~~ 498 (660)
T COG5107 424 RKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLL--KFPDSTLYKEKYLLFLIRINDEENARALFETSVE--RLEK 498 (660)
T ss_pred hccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHH--HHHH
Confidence 64 46667888888666 4677788888886554 24554433 3345556677888899999986664 3333
Q ss_pred C--hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHH
Q 036237 452 T--IEHYGCLVDILCRTGYLEEAKSTIESMP-MRPNFVIWMSLLSGAR 496 (689)
Q Consensus 452 ~--~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~ 496 (689)
+ ...|..+|+-=..-|++..+..+=+++. .-|...+-..+.+-|.
T Consensus 499 ~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ 546 (660)
T COG5107 499 TQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYA 546 (660)
T ss_pred hhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHh
Confidence 3 5788888888888899888887766663 2344444444444443
No 248
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.28 E-value=13 Score=43.20 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=17.3
Q ss_pred HHHHHHHHHhCC--CchHHHHHHHHhHh
Q 036237 90 YNLLIKCYVFNQ--RSHEALTLFCDLLD 115 (689)
Q Consensus 90 ~~~ll~~~~~~g--~~~~a~~~~~~m~~ 115 (689)
.-.+|.+|++.+ ..++++....+...
T Consensus 793 ~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 793 NLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 346777888777 56667666666654
No 249
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.25 E-value=11 Score=41.72 Aligned_cols=100 Identities=10% Similarity=0.046 Sum_probs=56.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCCC---chhHHHHHHHHHHhcCChHHHHHHHhhCCCCCeehHHHHHHHHHhCCChHH
Q 036237 130 KGAARLGAIKEGKQIHGLVFKLGFGF---DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEV 206 (689)
Q Consensus 130 ~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~ 206 (689)
+.+.+.+.+++|..+-+... |..| -..++...|+.+.-.|++++|-...-.|...+..-|-.-+.-+...++...
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~ 441 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTD 441 (846)
T ss_pred HHHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccch
Confidence 33444455555554433322 2233 234666777777777777777777777777777777777777766666554
Q ss_pred HHHHHhhCCC-CCcchHHHHHHHHHh
Q 036237 207 AMKLFDEMPD-RDLFSWTCLVDGFSK 231 (689)
Q Consensus 207 A~~~~~~m~~-~d~~~~~~li~~~~~ 231 (689)
...++-.-.. -+...|..++-.+..
T Consensus 442 Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 442 IAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hhccCCCCCcccCchHHHHHHHHHHH
Confidence 3333222221 144566666666655
No 250
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.11 E-value=2.4 Score=41.16 Aligned_cols=120 Identities=12% Similarity=0.105 Sum_probs=82.7
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCChH
Q 036237 426 ACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMS---LLSGARNHGNKD 502 (689)
Q Consensus 426 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---ll~~~~~~g~~~ 502 (689)
.....|++.+|...|+..... ..-+...--.|+..|...|+.++|..++..++.+-...-|.. -+..+.+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 455678888888888887742 223356667788899999999999999999875533333333 222233333333
Q ss_pred HHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 503 IGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 503 ~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
+... ++.-...+|+|...-..|+..|...|+.++|.+.+=.+.++
T Consensus 221 ~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 221 EIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2222 23344578999999999999999999999999887776554
No 251
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.10 E-value=2.8 Score=36.50 Aligned_cols=66 Identities=18% Similarity=0.207 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc-CCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 036237 418 ITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRT-GYLEEAKSTIESMPMRPNFVIWMSLLSGAR 496 (689)
Q Consensus 418 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~ 496 (689)
.....++..|.+.+.++++..++..+.. +...++.+... ++.+.|.+++.+- .+...|..++..+.
T Consensus 70 yd~~~~~~~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~~l 136 (140)
T smart00299 70 YDIEKVGKLCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKALL 136 (140)
T ss_pred CCHHHHHHHHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHHHH
Confidence 3344455566666666666555554431 12223333333 5566666666652 24455655555443
No 252
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.08 E-value=0.13 Score=31.84 Aligned_cols=33 Identities=15% Similarity=0.201 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 036237 486 VIWMSLLSGARNHGNKDIGEYAANNLIKVAPDT 518 (689)
Q Consensus 486 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 518 (689)
..|..+...+...|++++|+..++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356777788888888888888888888888864
No 253
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.00 E-value=1.9 Score=44.01 Aligned_cols=32 Identities=22% Similarity=0.127 Sum_probs=15.3
Q ss_pred CCCchHHHHHHHHhHhCCCCCCcccHHHHHHH
Q 036237 100 NQRSHEALTLFCDLLDRFLLPDNFTLPCVIKG 131 (689)
Q Consensus 100 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 131 (689)
.|+.++|++++..+......++..||..+.+.
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 45555555555554433334444454444433
No 254
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.87 E-value=6.5 Score=38.29 Aligned_cols=147 Identities=11% Similarity=0.061 Sum_probs=95.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcC
Q 036237 389 IVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTG 467 (689)
Q Consensus 389 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g 467 (689)
.......|++.+|..+|+...... .-+...-..+..++...|+++.|..++..+-.+ ..-+ ......-+..+.+..
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~--~~~~~~~~l~a~i~ll~qaa 217 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ--AQDKAAHGLQAQIELLEQAA 217 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc--chhhHHHHHHHHHHHHHHHh
Confidence 345567788888888888887742 222345556777888889998888888876532 1111 112233455666666
Q ss_pred CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCCCchhHHHHHHHHHhcCCcchH
Q 036237 468 YLEEAKSTIESMPMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKV--APDTIGCYVVLSNIYAAAGQWDKV 538 (689)
Q Consensus 468 ~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~p~~~~~~~~L~~~~~~~g~~~~A 538 (689)
...+...+-.+..-.| |...-..+...+...|+.+.|...+-.+++. .-.+...-..|+.++.-.|.-+.+
T Consensus 218 ~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 218 ATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred cCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHH
Confidence 6665555555554455 5666677778888888988888877777663 344566777777777777755543
No 255
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.74 E-value=14 Score=41.24 Aligned_cols=142 Identities=15% Similarity=0.075 Sum_probs=76.5
Q ss_pred hhcccccCCCCHHHHHHHHhcccCCCChhhHHHHHHH----HHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhc
Q 036237 60 LSLYVDPHINNLHYARSIFDRILQHPSLVLYNLLIKC----YVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARL 135 (689)
Q Consensus 60 l~~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~ll~~----~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 135 (689)
+++..+ ..-++.|..+-..-. -+...-..+... +.+.|++++|...|-+-... +.| ..+++-+...
T Consensus 341 L~iL~k--K~ly~~Ai~LAk~~~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLda 410 (933)
T KOG2114|consen 341 LDILFK--KNLYKVAINLAKSQH--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDA 410 (933)
T ss_pred HHHHHH--hhhHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCH
Confidence 444444 455666666544432 233333333333 34577888888777665532 222 2344555555
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCee-hHHHHHHHHHhCCChHHHHHHHh
Q 036237 136 GAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLV-SWNCLIDGYVKKGEVEVAMKLFD 212 (689)
Q Consensus 136 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~li~~~~~~g~~~~A~~~~~ 212 (689)
..+..-..+++.+.+.|+. +..--..|+.+|.+.++.++-.+..+...+.... -.-..+..+-+.+-.++|.-+-.
T Consensus 411 q~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~ 487 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLAT 487 (933)
T ss_pred HHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHH
Confidence 5566666677777777743 3444566777888888777777776665522111 13344444444555554444433
No 256
>PRK15331 chaperone protein SicA; Provisional
Probab=93.70 E-value=2 Score=38.07 Aligned_cols=86 Identities=9% Similarity=0.026 Sum_probs=46.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 036237 390 VGLGMHGMATQALDLFNKMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGY 468 (689)
Q Consensus 390 ~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 468 (689)
--+-+.|++++|..+|+-+... .|. ..-+..|..+|-..+.+++|...|.....- . .-|+..+--+...|...|+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~--d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIY--DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhCC
Confidence 3345567777777777666553 222 223344445555566677777766655421 1 1122223335566666666
Q ss_pred HHHHHHHHHhC
Q 036237 469 LEEAKSTIESM 479 (689)
Q Consensus 469 ~~~A~~~~~~~ 479 (689)
.++|...|...
T Consensus 121 ~~~A~~~f~~a 131 (165)
T PRK15331 121 AAKARQCFELV 131 (165)
T ss_pred HHHHHHHHHHH
Confidence 66666666654
No 257
>PRK11906 transcriptional regulator; Provisional
Probab=93.65 E-value=4.9 Score=41.91 Aligned_cols=157 Identities=8% Similarity=0.075 Sum_probs=102.9
Q ss_pred hhH--HHHHHHHHHc-----CCHHHHHHHHHHHHH-CCCCCCHH-HHHHHHHHHh---------ccCcHHHHHHHHHHhH
Q 036237 383 GHW--TAMIVGLGMH-----GMATQALDLFNKMCR-MGMKPTAI-TFIGVLNACS---------HAGLVNDGRRYFNMMI 444 (689)
Q Consensus 383 ~~~--~~li~~~~~~-----g~~~~A~~l~~~m~~-~g~~p~~~-t~~~ll~a~~---------~~g~~~~a~~~~~~~~ 444 (689)
..| ...+.|.... ...+.|+.+|.+... ..+.|+.. .|..+..++. ......+|.+.-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 456 5555554442 134578888998872 23677644 3333322221 1334556677776666
Q ss_pred HhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchh
Q 036237 445 NDYGIEP-TIEHYGCLVDILCRTGYLEEAKSTIESM-PMRPNF-VIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGC 521 (689)
Q Consensus 445 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 521 (689)
.+.| |......+..++.-.|+++.|...|++. ...||. .+|......+.-.|+.++|...++++++++|....+
T Consensus 332 ---eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 ---DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred ---hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 3444 4666777778788888899999999997 356764 477777777888999999999999999999976443
Q ss_pred HH--HHHHHHHhcCCcchHHHHHH
Q 036237 522 YV--VLSNIYAAAGQWDKVSEVRE 543 (689)
Q Consensus 522 ~~--~L~~~~~~~g~~~~A~~~~~ 543 (689)
-. ..++.|...+ .++|..++-
T Consensus 409 ~~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 409 VVIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHHcCCc-hhhhHHHHh
Confidence 33 3344566554 566666653
No 258
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.57 E-value=5.5 Score=38.04 Aligned_cols=171 Identities=15% Similarity=0.174 Sum_probs=80.2
Q ss_pred HHhcCCHHHHHHHHHhcCCC------ChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHccc---
Q 036237 260 YMKAGDVDSACELFDDMEIR------DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLA--- 330 (689)
Q Consensus 260 ~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~--- 330 (689)
-.+.|++++|.+.|+.+..+ ...+--.++-++-+.+++++|+..+++....-..-...-|..-|.+.+..-
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID 123 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC
Confidence 34567777777777776643 223344556667777888888777777765433323333444444433211
Q ss_pred ----chhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 036237 331 ----VLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFN 406 (689)
Q Consensus 331 ----~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 406 (689)
+...+.+.+..+.+ +++-|-.+.=..+|......+...=...=-.+..-|.+.|.+..|..-++
T Consensus 124 ~~~rDq~~~~~A~~~f~~------------~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~ 191 (254)
T COG4105 124 DVTRDQSAARAAFAAFKE------------LVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFE 191 (254)
T ss_pred ccccCHHHHHHHHHHHHH------------HHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 11111111111111 11111111111111111111100000001123455777777777777777
Q ss_pred HHHHCCCCCC-H---HHHHHHHHHHhccCcHHHHHHHHHHhH
Q 036237 407 KMCRMGMKPT-A---ITFIGVLNACSHAGLVNDGRRYFNMMI 444 (689)
Q Consensus 407 ~m~~~g~~p~-~---~t~~~ll~a~~~~g~~~~a~~~~~~~~ 444 (689)
+|.+. -|+ . ..+-.+..+|...|..++|.+.-+-+.
T Consensus 192 ~v~e~--y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 192 EVLEN--YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHhc--cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 77764 222 1 234455566777777777766655554
No 259
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.29 E-value=0.42 Score=45.51 Aligned_cols=114 Identities=10% Similarity=-0.045 Sum_probs=85.3
Q ss_pred HHHHHHHHhcccC-CCChhhHHHHHHHHHh-----CCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcC--------
Q 036237 71 LHYARSIFDRILQ-HPSLVLYNLLIKCYVF-----NQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLG-------- 136 (689)
Q Consensus 71 ~~~A~~~f~~~~~-~~~~~~~~~ll~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~-------- 136 (689)
+-..+..|...+. ++|-.+|-+.+..+.. .+..+-....++.|.+-|+.-|..+|+.||..+-+-.
T Consensus 50 Lv~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ 129 (406)
T KOG3941|consen 50 LVHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQ 129 (406)
T ss_pred ccchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHH
Confidence 3344556666653 6777788888877754 3566667777889999999999999999998765421
Q ss_pred --------ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh-HHHHHHHhhCC
Q 036237 137 --------AIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEI-DLGRRVFDAMD 184 (689)
Q Consensus 137 --------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~ 184 (689)
+-+-+..++++|...|+.||..+-..|++++++.|-. .+..++.-.|+
T Consensus 130 ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 130 KVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 2345788999999999999999999999999887753 44555555555
No 260
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.24 E-value=9.5 Score=37.81 Aligned_cols=96 Identities=11% Similarity=0.041 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhccC--------CCCcCh-----hhHHHHHHHHHcccchh---hHHHHHHHHHHhC
Q 036237 283 TWNSMIAGYELNGRFMEALELLETMLIG--------DVLPND-----ATLVSALSAVAGLAVLN---KGRWMHSYIVKNG 346 (689)
Q Consensus 283 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--------g~~p~~-----~t~~~ll~a~~~~~~~~---~a~~i~~~~~~~g 346 (689)
.||.-...+.+..++++|..++++..+- ...|+. .++..+..++...+..+ ++..+.+.+...
T Consensus 38 ~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e- 116 (278)
T PF08631_consen 38 CYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESE- 116 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-
Confidence 3454444444333777776666654331 112222 12334444444444333 233333333222
Q ss_pred CccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC
Q 036237 347 FVVDGVLGTLLIQMYSKCGSIESALTVFRAISK 379 (689)
Q Consensus 347 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 379 (689)
.+..+.++-.-++...+.++.+.+.+++.+|..
T Consensus 117 ~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~ 149 (278)
T PF08631_consen 117 YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIR 149 (278)
T ss_pred CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHH
Confidence 222233333344444555666666666665543
No 261
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.20 E-value=3.6 Score=44.20 Aligned_cols=115 Identities=13% Similarity=0.073 Sum_probs=72.1
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChhHHH-HHHHHHHhcCCHHHHHHHHHhCCC------CCCHHHHHHHHHHHHhcCChH
Q 036237 430 AGLVNDGRRYFNMMINDYGIEPTIEHYG-CLVDILCRTGYLEEAKSTIESMPM------RPNFVIWMSLLSGARNHGNKD 502 (689)
Q Consensus 430 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~------~p~~~~~~~ll~~~~~~g~~~ 502 (689)
....+.|.++++.+... -|+...|. --...+...|++++|.+.|++.-. +.....+--+...+....+++
T Consensus 246 ~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 34566677777776632 35543333 233556667777777777775421 112334455666677788899
Q ss_pred HHHHHHHHHhhcCCCCchhHH-HHHHHHHhcCCc-------chHHHHHHHHHh
Q 036237 503 IGEYAANNLIKVAPDTIGCYV-VLSNIYAAAGQW-------DKVSEVREMMKK 547 (689)
Q Consensus 503 ~a~~~~~~~~~~~p~~~~~~~-~L~~~~~~~g~~-------~~A~~~~~~m~~ 547 (689)
+|...+.++.+.+.-....|. ..+-+|...|+. ++|.+++++...
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 999888888886654444443 455556778888 788888877653
No 262
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.10 E-value=17 Score=42.27 Aligned_cols=122 Identities=13% Similarity=0.081 Sum_probs=51.6
Q ss_pred CCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH----HHhccCcHHHHHHHH
Q 036237 365 GSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLN----ACSHAGLVNDGRRYF 440 (689)
Q Consensus 365 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~----a~~~~g~~~~a~~~~ 440 (689)
+++++|+.-+.++. ...|.-.+..--++|.+.+|+.++ +|+...+..+.. -|...+.+++|--.|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 45555555555444 122333333334455555555443 344443333332 233344444444444
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCChHHHHHH
Q 036237 441 NMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVI--WMSLLSGARNHGNKDIGEYA 507 (689)
Q Consensus 441 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~--~~~ll~~~~~~g~~~~a~~~ 507 (689)
+..-+ ..--+.+|..+|+|.+|+.+..++....|... -..|.+-+...++.-+|-++
T Consensus 963 e~~Gk----------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~i 1021 (1265)
T KOG1920|consen 963 ERCGK----------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKI 1021 (1265)
T ss_pred HHhcc----------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHH
Confidence 33321 11123445555555555555555532222222 13444444444444444333
No 263
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.07 E-value=1.3 Score=46.82 Aligned_cols=132 Identities=15% Similarity=0.198 Sum_probs=85.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 036237 391 GLGMHGMATQALDLFNKMCRMGMKP--TAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGY 468 (689)
Q Consensus 391 ~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 468 (689)
.....|+++++.++.+.-. +-| +..-...++.-+.+.|..+.|+++-..-.. --++..++|+
T Consensus 270 ~av~~~d~~~v~~~i~~~~---ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~ 333 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASN---LLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGN 333 (443)
T ss_dssp HHHHTT-HHH-----HHHH---TGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-
T ss_pred HHHHcCChhhhhhhhhhhh---hcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCC
Confidence 3455778888777665211 111 133466777777888888888876433221 2456678999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 469 LEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 469 ~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
++.|.++.++.. +...|..|......+|+++.|+..+++.- -+..|+-.|.-.|+.+.-.++.+....+
T Consensus 334 L~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 334 LDIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 999988887764 77899999999999999999999888653 4567777888888877777766666655
Q ss_pred C
Q 036237 549 G 549 (689)
Q Consensus 549 ~ 549 (689)
|
T Consensus 403 ~ 403 (443)
T PF04053_consen 403 G 403 (443)
T ss_dssp T
T ss_pred c
Confidence 4
No 264
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.07 E-value=2.7 Score=41.28 Aligned_cols=156 Identities=11% Similarity=0.036 Sum_probs=83.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHH----HHHHHhcCCHH
Q 036237 395 HGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCL----VDILCRTGYLE 470 (689)
Q Consensus 395 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l----i~~~~~~g~~~ 470 (689)
+|+..+|-..++++.+. .+.|...+...=.+|...|+.+.-...++++.. ...|+...|..+ .-++..+|-++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 45566666666666653 344445555555666666666666666666653 334454333332 23344667777
Q ss_pred HHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC----CchhHHHHHHHHHhcCCcchHHHHHHH
Q 036237 471 EAKSTIESM-PMR-PNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPD----TIGCYVVLSNIYAAAGQWDKVSEVREM 544 (689)
Q Consensus 471 ~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~L~~~~~~~g~~~~A~~~~~~ 544 (689)
+|++.-++. .+. .|...-.++...+...|+..++.++..+--..-.. -...|...+-.+...+.++.|.++++.
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 777766664 222 24445555555566666666666665543321110 112344555556666777777777665
Q ss_pred HHhCCCccC
Q 036237 545 MKKRGFRKD 553 (689)
Q Consensus 545 m~~~~~~~~ 553 (689)
=.-+.+.++
T Consensus 273 ei~k~l~k~ 281 (491)
T KOG2610|consen 273 EIWKRLEKD 281 (491)
T ss_pred HHHHHhhcc
Confidence 433333333
No 265
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.87 E-value=0.89 Score=38.06 Aligned_cols=86 Identities=15% Similarity=0.079 Sum_probs=36.9
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC----CCC--CCHHHHHHHHHHHHhcCCh
Q 036237 428 SHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM----PMR--PNFVIWMSLLSGARNHGNK 501 (689)
Q Consensus 428 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~--p~~~~~~~ll~~~~~~g~~ 501 (689)
+..|+++.|++.|..... -.+.....||.-..+|--.|+.++|++-+++. +-+ .--..|..-...|+..|+.
T Consensus 54 aE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 344444444444444441 11122344444444444444444444444432 100 0011222333345556666
Q ss_pred HHHHHHHHHHhhcC
Q 036237 502 DIGEYAANNLIKVA 515 (689)
Q Consensus 502 ~~a~~~~~~~~~~~ 515 (689)
+.|..-|+.+-++.
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 66666665554443
No 266
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.72 E-value=3 Score=35.99 Aligned_cols=117 Identities=10% Similarity=0.005 Sum_probs=58.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 036237 387 AMIVGLGMHGMATQALDLFNKMCRMGMKP--TAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILC 464 (689)
Q Consensus 387 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 464 (689)
.-.....+.|++++|.+.|+.+...=.-+ ....-..++.++.+.+++++|...+++.++-+--.|+ ..|...+.+++
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~ 93 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLS 93 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHH
Confidence 33444555677777777777666531100 1234555666666777777777777766643222232 23333333333
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc
Q 036237 465 RTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTI 519 (689)
Q Consensus 465 ~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 519 (689)
.-...+..+.-+- ..+ +..+....|...|+.+++.-|++.
T Consensus 94 ~~~~~~~~~~~~~--~~d-------------rD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 94 YYEQDEGSLQSFF--RSD-------------RDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHhhhHHhhhc--ccc-------------cCcHHHHHHHHHHHHHHHHCcCCh
Confidence 2222111111111 111 111235577788888888888753
No 267
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.60 E-value=2.4 Score=40.70 Aligned_cols=102 Identities=22% Similarity=0.229 Sum_probs=66.5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC-CChhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHH
Q 036237 419 TFIGVLNACSHAGLVNDGRRYFNMMINDYGIE-PTIEHYGCLVDILCRTGYLEEAKSTIESM----PMRP-NFVIWMSLL 492 (689)
Q Consensus 419 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll 492 (689)
.|+.-+..+ ..|++..|...|...++.|.-. -....+-.|...+...|++++|..+|..+ |..| -+..+--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 455554433 4566777777777777543111 11345556778888888888887777665 2222 234556666
Q ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCchh
Q 036237 493 SGARNHGNKDIGEYAANNLIKVAPDTIGC 521 (689)
Q Consensus 493 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 521 (689)
......|+.++|...++++++..|+.+.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 77778888888888888888888876543
No 268
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.17 E-value=2.9 Score=43.67 Aligned_cols=145 Identities=11% Similarity=0.031 Sum_probs=84.5
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH--HhcCCHH
Q 036237 393 GMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDIL--CRTGYLE 470 (689)
Q Consensus 393 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~--~~~g~~~ 470 (689)
-+..++..-+++-++..+ +.||..+.-.++ +-.....+.++.++|++..+. | ... +.... ...|.
T Consensus 179 WRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-g----E~~---lg~s~~~~~~g~-- 245 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-G----EAS---LGKSQFLQHHGH-- 245 (539)
T ss_pred HhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-H----HHh---hchhhhhhcccc--
Confidence 344556666666666665 567765443333 333455678888888877642 1 000 00000 00111
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC--CchhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 471 EAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPD--TIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 471 ~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
..+.+..-...|-..+=..|..++.+.|+.++|++.++.+++..|. +......|++.+...+++.++..++.+-.+.
T Consensus 246 -~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 246 -FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred -hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 1111111111122333355777778889999999999999887664 4557788899999999999999888876544
Q ss_pred CCc
Q 036237 549 GFR 551 (689)
Q Consensus 549 ~~~ 551 (689)
...
T Consensus 325 ~lp 327 (539)
T PF04184_consen 325 SLP 327 (539)
T ss_pred cCC
Confidence 333
No 269
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.06 E-value=0.46 Score=42.91 Aligned_cols=88 Identities=13% Similarity=0.146 Sum_probs=67.3
Q ss_pred HHHhcCCHHHHHHHHHhC----CC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCC
Q 036237 462 ILCRTGYLEEAKSTIESM----PM---RPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQ 534 (689)
Q Consensus 462 ~~~~~g~~~~A~~~~~~~----~~---~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~ 534 (689)
-+.+.|.+++|..-+..+ +. +-..+.|..-..+..+.+..+.|+....++++++|....++..-+.+|.+..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 345566666666655543 11 11244566667778899999999999999999999888888888999999999
Q ss_pred cchHHHHHHHHHhCC
Q 036237 535 WDKVSEVREMMKKRG 549 (689)
Q Consensus 535 ~~~A~~~~~~m~~~~ 549 (689)
+++|.+-++++.+..
T Consensus 184 ~eealeDyKki~E~d 198 (271)
T KOG4234|consen 184 YEEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999988743
No 270
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.72 E-value=5.2 Score=35.80 Aligned_cols=123 Identities=11% Similarity=0.046 Sum_probs=70.6
Q ss_pred HHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhH-HHHHHHHHHhcCChHHHHHHHhhCCCC
Q 036237 108 TLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFV-LSSLVSMYAKFGEIDLGRRVFDAMDDK 186 (689)
Q Consensus 108 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~ 186 (689)
+..+.+.+.+++|+...+..++..+.+.|...... +++..++-+|... ...|++.- +....+.++=-.|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~---~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLG---NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhH---ccChHHHHHHHHHHHH
Confidence 44555566777788788888888888877755433 3444454444433 33333222 1223333333333322
Q ss_pred CeehHHHHHHHHHhCCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHH
Q 036237 187 DLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEI 237 (689)
Q Consensus 187 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~ 237 (689)
=...+..++..+...|++-+|+++.+....-+......++.+..+.++...
T Consensus 88 L~~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~l 138 (167)
T PF07035_consen 88 LGTAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQL 138 (167)
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHH
Confidence 223456677778888888888888877655555555566666666665543
No 271
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.60 E-value=2.8 Score=44.99 Aligned_cols=158 Identities=16% Similarity=0.157 Sum_probs=79.9
Q ss_pred hHHHHHHHHHhCCChHHHHHHHhhcCcCC----------cchHHHHHHHHHh----cCCHHHHHHHHHhcCC--CChHHH
Q 036237 221 SWTCLVDGFSKCGKVEIAREIFYRMPNRN----------LVSWNAMINGYMK----AGDVDSACELFDDMEI--RDLITW 284 (689)
Q Consensus 221 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~----------~~~~~~li~~~~~----~g~~~~A~~~~~~~~~--~~~~~~ 284 (689)
.+..++....-.|+-+.+++.+.+..+.+ ...|...+..++. ....+.|.++++.+.. |+...|
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lf 269 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALF 269 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHH
Confidence 34455555666677777777766655422 1222333322222 3345566666666654 444444
Q ss_pred HHHH-HHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHh
Q 036237 285 NSMI-AGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSK 363 (689)
Q Consensus 285 ~~li-~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~ 363 (689)
...- ..+...|+.++|++.|++..... .. +. +.....+--+.-.+.-
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q--~~---~~---------------------------Ql~~l~~~El~w~~~~ 317 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQ--SE---WK---------------------------QLHHLCYFELAWCHMF 317 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccch--hh---HH---------------------------hHHHHHHHHHHHHHHH
Confidence 3322 33445566666666666544211 00 00 0011222234445666
Q ss_pred cCCHHHHHHHHHhcCCCCh---hhHHH-HHHHHHHcCCH-------HHHHHHHHHHHH
Q 036237 364 CGSIESALTVFRAISKKKV---GHWTA-MIVGLGMHGMA-------TQALDLFNKMCR 410 (689)
Q Consensus 364 ~g~~~~A~~~~~~~~~~~~---~~~~~-li~~~~~~g~~-------~~A~~l~~~m~~ 410 (689)
.+++++|.+.|..+.+.+. ..|.- ...++...|+. ++|.++|.+...
T Consensus 318 ~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 318 QHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 6777888777777765321 22222 23345556766 778888877543
No 272
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.54 E-value=23 Score=39.68 Aligned_cols=138 Identities=11% Similarity=0.051 Sum_probs=87.4
Q ss_pred CCCHHHHHHHHhcccCCCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHH
Q 036237 68 INNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGL 147 (689)
Q Consensus 68 ~g~~~~A~~~f~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 147 (689)
.|++++|...+-+.... .--..+|.-|.......+-...++.+.+.|.. +...-..|+.+|.+.++.+.-.+....
T Consensus 381 Kgdf~~A~~qYI~tI~~---le~s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~ 456 (933)
T KOG2114|consen 381 KGDFDEATDQYIETIGF---LEPSEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISK 456 (933)
T ss_pred cCCHHHHHHHHHHHccc---CChHHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhc
Confidence 59999999887654311 11124566677777777778888888888865 566667889999999998876665543
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCeehHHHHHHHHHhCCChHHHHHHHhhCCC
Q 036237 148 VFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPD 216 (689)
Q Consensus 148 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 216 (689)
.- .|.. .+-....+..+.+.+-+++|..+-..... ....... .+-..+++++|++.+..++-
T Consensus 457 ~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he~vl~i---lle~~~ny~eAl~yi~slp~ 518 (933)
T KOG2114|consen 457 CD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-HEWVLDI---LLEDLHNYEEALRYISSLPI 518 (933)
T ss_pred CC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-CHHHHHH---HHHHhcCHHHHHHHHhcCCH
Confidence 32 1211 11233455666666777777766554443 2222222 33455788899988888864
No 273
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.34 E-value=9.8 Score=35.23 Aligned_cols=179 Identities=13% Similarity=0.084 Sum_probs=99.0
Q ss_pred CCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHH
Q 036237 365 GSIESALTVFRAISK--K-KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYF 440 (689)
Q Consensus 365 g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~ 440 (689)
|-+.-|+-=|.+... | -+..||-+.--+...|+++.|.+.|+...+. .|. ..++..-.-++--.|++.-|.+-|
T Consensus 79 GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhhHHHH
Confidence 444444444444332 3 3457888888888888888888888888773 443 223222222344567777777655
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC--
Q 036237 441 NMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDT-- 518 (689)
Q Consensus 441 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-- 518 (689)
...-. -.|+...-...+-.-.+.-+..+|..-+.+--.+.|..-|...+-.+.--.-.+ +.+++++.+-..++
T Consensus 157 ~~fYQ---~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n~~ 231 (297)
T COG4785 157 LAFYQ---DDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDNTS 231 (297)
T ss_pred HHHHh---cCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccchHH
Confidence 44432 233322211112222244456666654443222345566665555443221111 12233333322222
Q ss_pred -----chhHHHHHHHHHhcCCcchHHHHHHHHHhCCC
Q 036237 519 -----IGCYVVLSNIYAAAGQWDKVSEVREMMKKRGF 550 (689)
Q Consensus 519 -----~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~~ 550 (689)
.++|.-|+.-|...|..++|..+|+-....++
T Consensus 232 ~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 232 LAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 35889999999999999999999998776543
No 274
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=91.20 E-value=24 Score=37.91 Aligned_cols=137 Identities=8% Similarity=0.033 Sum_probs=82.0
Q ss_pred hHHHHHhhcccccCCCCHHHHHHHHhcccC-CCChhh-HHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHH
Q 036237 54 GISSRLLSLYVDPHINNLHYARSIFDRILQ-HPSLVL-YNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKG 131 (689)
Q Consensus 54 ~~~~~ll~~~~~~~~g~~~~A~~~f~~~~~-~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 131 (689)
..++.||.---. ...++.++.+++.+.. -|...- |-....-=.+.|..+.+.++|++-.+ |++-+...|...+..
T Consensus 46 ~~wt~li~~~~~--~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 46 DAWTTLIQENDS--IEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAF 122 (577)
T ss_pred cchHHHHhccCc--hhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHH
Confidence 345555543333 4455666677766652 455542 34444444567788888888887775 344455555555554
Q ss_pred HH-hcCChHHHHHHHHHHHHh-CCC-CchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCeehHHH
Q 036237 132 AA-RLGAIKEGKQIHGLVFKL-GFG-FDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNC 193 (689)
Q Consensus 132 ~~-~~~~~~~a~~~~~~~~~~-g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 193 (689)
+. ..|+.+..+..|+.++.. |.. .....|...|..-..++++.....+++++.+-....++.
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~ 187 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNR 187 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHH
Confidence 43 456777777788777765 321 233466677776677788888888888776543333333
No 275
>PRK09687 putative lyase; Provisional
Probab=91.16 E-value=17 Score=36.02 Aligned_cols=216 Identities=13% Similarity=-0.003 Sum_probs=95.5
Q ss_pred CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCCh----HHHHHHHHHHHHhCCCCchhH
Q 036237 84 HPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAI----KEGKQIHGLVFKLGFGFDKFV 159 (689)
Q Consensus 84 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~----~~a~~~~~~~~~~g~~~~~~~ 159 (689)
.+|.......+.++...|. .++...+..+... +|...=...+.+++..|+. +++...+..+... +++..+
T Consensus 34 d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 5555555555666655553 3333333334332 2333334444555555542 2333334333222 455555
Q ss_pred HHHHHHHHHhcCCh-----HHHHHHHhh-CCCCCeehHHHHHHHHHhCCChHHHHHHHhhC-CCCCcchHHHHHHHHHhC
Q 036237 160 LSSLVSMYAKFGEI-----DLGRRVFDA-MDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM-PDRDLFSWTCLVDGFSKC 232 (689)
Q Consensus 160 ~~~li~~~~~~g~~-----~~A~~~~~~-m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~d~~~~~~li~~~~~~ 232 (689)
....+.+++..+.- ..+...+.. +..++..+--..+.++.+.|+. +|+..+-.+ ..+|...-...+.++.+.
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDE-AAIPLLINLLKDPNGDVRNWAAFALNSN 186 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCH-HHHHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence 55555555554321 122222222 2233444444455555555543 333333333 334444444444444443
Q ss_pred C-ChHHHHHHH-hhcCcCCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHhcc
Q 036237 233 G-KVEIAREIF-YRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLI 309 (689)
Q Consensus 233 g-~~~~A~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 309 (689)
+ ....+...+ ..+..++..+....+.++++.|+.+-...+.+.+..++ ..-..+.++...|.. +|+..+.++..
T Consensus 187 ~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 187 KYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred CCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 2 122333332 22333555566666666666666433333333333333 123445555566654 46666666554
No 276
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.64 E-value=0.45 Score=29.47 Aligned_cols=31 Identities=13% Similarity=0.128 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 036237 487 IWMSLLSGARNHGNKDIGEYAANNLIKVAPD 517 (689)
Q Consensus 487 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 517 (689)
+|..+...+...|+++.|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5667777788888888888888888888874
No 277
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=90.20 E-value=36 Score=38.19 Aligned_cols=152 Identities=10% Similarity=0.030 Sum_probs=77.0
Q ss_pred cCCCchHHHHHHHHHHHhCCCCCc----h-HHHHHhhcccccCCCCHHHHHHHHhcccC---CCChhhHHHHH-----HH
Q 036237 30 FSSTHKETQQLHALSVKTNLIYHS----G-ISSRLLSLYVDPHINNLHYARSIFDRILQ---HPSLVLYNLLI-----KC 96 (689)
Q Consensus 30 ~c~~~~~~~~~~~~~~~~g~~~~~----~-~~~~ll~~~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~~ll-----~~ 96 (689)
-..+++.|+......+..--.++. + ....|+..|.+ .+... |....++... ......|.... ..
T Consensus 72 eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~--~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l 148 (608)
T PF10345_consen 72 ETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFK--TNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQL 148 (608)
T ss_pred HcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--cCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 334466666665544322211111 1 12234455555 44433 7777776542 11112232222 22
Q ss_pred HHhCCCchHHHHHHHHhHhCC---CCCCcccHHHHHHHHH--hcCChHHHHHHHHHHHHhCC---------CCchhHHHH
Q 036237 97 YVFNQRSHEALTLFCDLLDRF---LLPDNFTLPCVIKGAA--RLGAIKEGKQIHGLVFKLGF---------GFDKFVLSS 162 (689)
Q Consensus 97 ~~~~g~~~~a~~~~~~m~~~g---~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~---------~~~~~~~~~ 162 (689)
+...+++..|++.++.....- ..|-...+..++.+.. +.+..+.+.+....+..... .|-..++..
T Consensus 149 ~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~l 228 (608)
T PF10345_consen 149 ALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFL 228 (608)
T ss_pred HHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHH
Confidence 223378888999888876532 2334445555555554 34545666666665543221 234456666
Q ss_pred HHHHHH--hcCChHHHHHHHhhCC
Q 036237 163 LVSMYA--KFGEIDLGRRVFDAMD 184 (689)
Q Consensus 163 li~~~~--~~g~~~~A~~~~~~m~ 184 (689)
+++.++ ..|+++.+...+.++.
T Consensus 229 ll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 229 LLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666544 5677667766665554
No 278
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.14 E-value=11 Score=33.27 Aligned_cols=89 Identities=13% Similarity=0.079 Sum_probs=56.7
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChH
Q 036237 425 NACSHAGLVNDGRRYFNMMINDYGIEPTI-EHYGCLVDILCRTGYLEEAKSTIESMPMR-PNFVIWMSLLSGARNHGNKD 502 (689)
Q Consensus 425 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~ll~~~~~~g~~~ 502 (689)
+.-...++.+++..+++.+. -+.|.. ..-..-...+.+.|+|.+|..+|+++.-. |....-.+|+..|.....-.
T Consensus 18 ~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 34456678888888888776 566763 33344456677888999999999887433 44444456666666554444
Q ss_pred HHHHHHHHHhhcCC
Q 036237 503 IGEYAANNLIKVAP 516 (689)
Q Consensus 503 ~a~~~~~~~~~~~p 516 (689)
.=....+++++..|
T Consensus 95 ~Wr~~A~evle~~~ 108 (160)
T PF09613_consen 95 SWRRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHHHhcCC
Confidence 44445556666555
No 279
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.91 E-value=0.6 Score=40.97 Aligned_cols=128 Identities=14% Similarity=0.122 Sum_probs=78.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCeehHHHHHHHHHhCCChHHH
Q 036237 128 VIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVA 207 (689)
Q Consensus 128 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 207 (689)
++..+.+.+.+.....+++.+.+.+...+....+.|+..|++.++.+...++++.... .-...++..+-+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4556666777888888888888777667788889999999999888888888874333 3345667777777777777
Q ss_pred HHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHhhcCcCCcchHHHHHHHHHhcCC
Q 036237 208 MKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGD 265 (689)
Q Consensus 208 ~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 265 (689)
.-++.++...+... ..+...++++.|.+..... .++.+|..+++.+...+.
T Consensus 90 ~~Ly~~~~~~~~al-----~i~~~~~~~~~a~e~~~~~--~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 90 VYLYSKLGNHDEAL-----EILHKLKDYEEAIEYAKKV--DDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHCCTTHTTCS-----STSSSTHCSCCCTTTGGGC--SSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHcccHHHHH-----HHHHHHccHHHHHHHHHhc--CcHHHHHHHHHHHHhcCc
Confidence 77777664421110 0122233344444332222 235566666666555443
No 280
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.85 E-value=0.52 Score=29.84 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=20.2
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHH
Q 036237 521 CYVVLSNIYAAAGQWDKVSEVREMMK 546 (689)
Q Consensus 521 ~~~~L~~~~~~~g~~~~A~~~~~~m~ 546 (689)
++..|+++|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888888888888888888744
No 281
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.72 E-value=15 Score=35.11 Aligned_cols=210 Identities=16% Similarity=0.206 Sum_probs=110.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhccC---CC--CcChhhHHHHHHHHHcccchhhHHHHHHHHHHh-----CCccchhH
Q 036237 284 WNSMIAGYELNGRFMEALELLETMLIG---DV--LPNDATLVSALSAVAGLAVLNKGRWMHSYIVKN-----GFVVDGVL 353 (689)
Q Consensus 284 ~~~li~~~~~~g~~~~A~~~~~~m~~~---g~--~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-----g~~~~~~~ 353 (689)
.-.+|..+.+.|++++.++.|.+|+.- .+ .-+..+.++++.-.+...+.+.-..+++.-.+. +-..--.+
T Consensus 68 LKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKT 147 (440)
T KOG1464|consen 68 LKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKT 147 (440)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeec
Confidence 344566666666666666666666421 11 123344555555555444444444444332221 11111123
Q ss_pred HhHHHhhHHhcCCHHHHHHHHHhcCC----C----C-------hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCH
Q 036237 354 GTLLIQMYSKCGSIESALTVFRAISK----K----K-------VGHWTAMIVGLGMHGMATQALDLFNKMCRMG-MKPTA 417 (689)
Q Consensus 354 ~~~li~~~~~~g~~~~A~~~~~~~~~----~----~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~ 417 (689)
-+-|...|...|.+..-.+++.++.. . | ...|..-|..|....+-.+-..++++..... .-|.+
T Consensus 148 NtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP 227 (440)
T KOG1464|consen 148 NTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP 227 (440)
T ss_pred cchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch
Confidence 34466667777777777777776642 0 1 2367777888888888777777888765432 23444
Q ss_pred HHHHHHHHHHh-----ccCcHHHHHHHHHHhHHhcCC--CCCh---hHHHHHHHHHHhcCC----HHHHHHHHHhCCCCC
Q 036237 418 ITFIGVLNACS-----HAGLVNDGRRYFNMMINDYGI--EPTI---EHYGCLVDILCRTGY----LEEAKSTIESMPMRP 483 (689)
Q Consensus 418 ~t~~~ll~a~~-----~~g~~~~a~~~~~~~~~~~~~--~p~~---~~~~~li~~~~~~g~----~~~A~~~~~~~~~~p 483 (689)
.. ..+++-|. +.|.+++|..-|-+..+.+.- .|.. --|-.|..++.+.|- -+||. -.+..|
T Consensus 228 lI-mGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAK----PyKNdP 302 (440)
T KOG1464|consen 228 LI-MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAK----PYKNDP 302 (440)
T ss_pred HH-HhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccC----CCCCCH
Confidence 33 34455553 467787776555444433322 2221 235556666666652 11110 011335
Q ss_pred CHHHHHHHHHHHHhc
Q 036237 484 NFVIWMSLLSGARNH 498 (689)
Q Consensus 484 ~~~~~~~ll~~~~~~ 498 (689)
.......|+.+|..+
T Consensus 303 EIlAMTnlv~aYQ~N 317 (440)
T KOG1464|consen 303 EILAMTNLVAAYQNN 317 (440)
T ss_pred HHHHHHHHHHHHhcc
Confidence 566677788877654
No 282
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.47 E-value=3.6 Score=40.50 Aligned_cols=116 Identities=12% Similarity=0.105 Sum_probs=91.5
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHH----HHHHHHHhcCChH
Q 036237 429 HAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PM-RPNFVIWM----SLLSGARNHGNKD 502 (689)
Q Consensus 429 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~----~ll~~~~~~g~~~ 502 (689)
-.|...+|-..++++.. ..+.|...++--=+++.-.|+.+.-...++++ +. .||...|. .+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 35777888888888886 45566777777778888999999888888886 32 45554332 3334456789999
Q ss_pred HHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHH
Q 036237 503 IGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMK 546 (689)
Q Consensus 503 ~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~ 546 (689)
+|++..+++++++|.|..+...++.++...|+..++.+...+-.
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTE 236 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 99999999999999999999999999999999999998876543
No 283
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.97 E-value=0.71 Score=29.20 Aligned_cols=27 Identities=11% Similarity=-0.031 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhh
Q 036237 487 IWMSLLSGARNHGNKDIGEYAANNLIK 513 (689)
Q Consensus 487 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 513 (689)
+|..|...|...|+++.|+.++++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467778888888888888888888554
No 284
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.66 E-value=14 Score=34.92 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=11.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHh
Q 036237 254 NAMINGYMKAGDVDSACELFDD 275 (689)
Q Consensus 254 ~~li~~~~~~g~~~~A~~~~~~ 275 (689)
+--..+|..+|..+.|-..+++
T Consensus 95 eKAs~lY~E~GspdtAAmaleK 116 (308)
T KOG1585|consen 95 EKASELYVECGSPDTAAMALEK 116 (308)
T ss_pred HHHHHHHHHhCCcchHHHHHHH
Confidence 3345566666666555544443
No 285
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.26 E-value=3.1 Score=40.67 Aligned_cols=75 Identities=11% Similarity=0.178 Sum_probs=54.7
Q ss_pred hhHHhHHHhhHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 036237 351 GVLGTLLIQMYSKCGSIESALTVFRAISKK---KVGHWTAMIVGLGMHGMATQALDLFNKMCR-----MGMKPTAITFIG 422 (689)
Q Consensus 351 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~ 422 (689)
..++..++..+..+|+.+.+.+.++++... +...|..++.+|.+.|+...|+..|+++.. .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345566788888888888888888877653 455788888888888888888888888765 466666555444
Q ss_pred HHH
Q 036237 423 VLN 425 (689)
Q Consensus 423 ll~ 425 (689)
...
T Consensus 233 y~~ 235 (280)
T COG3629 233 YEE 235 (280)
T ss_pred HHH
Confidence 333
No 286
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.25 E-value=2.3 Score=41.52 Aligned_cols=61 Identities=20% Similarity=0.202 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 487 IWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 487 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
++..++.++...|+.+.+...++++++.+|-+-..|..|+.+|.+.|+...|...++.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4455666677777888888888888888888888888888888888888888888887764
No 287
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=88.14 E-value=1.6 Score=29.01 Aligned_cols=32 Identities=19% Similarity=0.357 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 036237 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTA 417 (689)
Q Consensus 384 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 417 (689)
.|..+...|.+.|++++|+++|++..+ ..|+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~ 34 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA--LDPDD 34 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCC
Confidence 455666667777777777777777666 34543
No 288
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=87.89 E-value=90 Score=39.74 Aligned_cols=308 Identities=13% Similarity=0.061 Sum_probs=162.3
Q ss_pred HHHHHHhCCChHHHHHHHhhc----CcCC--cchHHHHHHHHHhcCCHHHHHHHHHh-cCCCChHHHHHHHHHHHHcCCh
Q 036237 225 LVDGFSKCGKVEIAREIFYRM----PNRN--LVSWNAMINGYMKAGDVDSACELFDD-MEIRDLITWNSMIAGYELNGRF 297 (689)
Q Consensus 225 li~~~~~~g~~~~A~~~~~~~----~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~ 297 (689)
+..+-.+.+.+..|.-.++.- .+.+ ...|..+...|+.-+++|....+... ...++ ...-|.-....|++
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~ 1465 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNW 1465 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccH
Confidence 334445566677777777662 2211 33444555578877777777666653 33322 22344556677888
Q ss_pred HHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhc
Q 036237 298 MEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAI 377 (689)
Q Consensus 298 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 377 (689)
..|...|+++.+.+ ++...+++.++......+.+....-..+-.....-+.....++.=+.+--+.++++.......
T Consensus 1466 ~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~-- 1542 (2382)
T KOG0890|consen 1466 ADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS-- 1542 (2382)
T ss_pred HHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh--
Confidence 88889998888754 223566777777666666666555433333222211112222333444466677776666555
Q ss_pred CCCChhhHHHH--HHHHHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH----------Hh
Q 036237 378 SKKKVGHWTAM--IVGLGMHG--MATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFN----------MM 443 (689)
Q Consensus 378 ~~~~~~~~~~l--i~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~----------~~ 443 (689)
.++...|.+. +..+.+.. +.-.-.+..+.+.+.-+.| +.+|+..|.+..+.++.- ..
T Consensus 1543 -~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~ 1613 (2382)
T KOG0890|consen 1543 -DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELENSI 1613 (2382)
T ss_pred -cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566554 22222222 1111112333333221111 222222222222211111 11
Q ss_pred HHhcCCCCCh------hHHHHHHHHHHhcCCHHHHHHHHHhC----CCCC-----CHHHHHHHHHHHHhcCChHHHHHHH
Q 036237 444 INDYGIEPTI------EHYGCLVDILCRTGYLEEAKSTIESM----PMRP-----NFVIWMSLLSGARNHGNKDIGEYAA 508 (689)
Q Consensus 444 ~~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~ 508 (689)
....+..++. ..|..-+..-....+..+-.--+++. ..+| -..+|......++..|.++.|....
T Consensus 1614 ~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nal 1693 (2382)
T KOG0890|consen 1614 EELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNAL 1693 (2382)
T ss_pred HHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 1111333332 11222222111111222222122211 1122 2458999999999999999999998
Q ss_pred HHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 036237 509 NNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRG 549 (689)
Q Consensus 509 ~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~ 549 (689)
-++.+..+ +..+...+......|+-..|..++++-.+..
T Consensus 1694 l~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1694 LNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred Hhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 88887664 4689999999999999999999999887544
No 289
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=87.83 E-value=0.97 Score=44.34 Aligned_cols=110 Identities=11% Similarity=0.086 Sum_probs=79.5
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcC
Q 036237 423 VLNACSHAGLVNDGRRYFNMMINDYGIEP-TIEHYGCLVDILCRTGYLEEAKSTIESMP-MR-PNFVIWMSLLSGARNHG 499 (689)
Q Consensus 423 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~ll~~~~~~g 499 (689)
-.+-|.+.|.+++|+..|...+ .+.| +..++..-..+|.+..++..|+.-....- +. .=...|..-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 3566888999999999998877 4567 78888888899999999988877665541 11 11224555566666678
Q ss_pred ChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHH
Q 036237 500 NKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVS 539 (689)
Q Consensus 500 ~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~ 539 (689)
+.++|.+-++.+++++|++.. |-..|++.....++.
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~~ 215 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIE----LKKSLARINSLRERK 215 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhhh
Confidence 999999999999999998643 444455444444443
No 290
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=87.81 E-value=40 Score=35.57 Aligned_cols=102 Identities=9% Similarity=0.149 Sum_probs=70.0
Q ss_pred CCCCHHHHH-HHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH---HHhcCCHHHHHHHHHhCC--CCCCHH
Q 036237 413 MKPTAITFI-GVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDI---LCRTGYLEEAKSTIESMP--MRPNFV 486 (689)
Q Consensus 413 ~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~---~~~~g~~~~A~~~~~~~~--~~p~~~ 486 (689)
..|+..|+. .++.-+-..|-..+|+..|..+.. -.+|+...|.-+|+. ...+| +.-+.++++.|- .-.|+.
T Consensus 455 ~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~ 531 (568)
T KOG2396|consen 455 IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSD 531 (568)
T ss_pred cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChH
Confidence 466766654 455666677888888888888873 445667777777764 33444 677777777762 336777
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhh-cCCC
Q 036237 487 IWMSLLSGARNHGNKDIGEYAANNLIK-VAPD 517 (689)
Q Consensus 487 ~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~ 517 (689)
.|...+.--..+|..+.+-.++.++.+ ++|.
T Consensus 532 lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~ 563 (568)
T KOG2396|consen 532 LWMDYMKEELPLGRPENCGQIYWRAMKTLQGE 563 (568)
T ss_pred HHHHHHHhhccCCCcccccHHHHHHHHhhChh
Confidence 887777777788888877777777666 5554
No 291
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.79 E-value=2.9 Score=36.85 Aligned_cols=53 Identities=17% Similarity=0.225 Sum_probs=32.1
Q ss_pred HhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 496 RNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 496 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
...++.+.++.++..+.-+.|..+..-..-++.+...|+|.+|.++++.+.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 34456666666666666666666666666666666666666666666665543
No 292
>PRK09687 putative lyase; Provisional
Probab=87.71 E-value=31 Score=34.20 Aligned_cols=61 Identities=11% Similarity=-0.047 Sum_probs=27.1
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 036237 451 PTIEHYGCLVDILCRTGYLEEAKSTI-ESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAP 516 (689)
Q Consensus 451 p~~~~~~~li~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 516 (689)
++..+-..-+.++++.|.. +|...+ +.+. .++ .....+.++...|+. .|...+.++.+.+|
T Consensus 204 ~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~-~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKDK-RVLSVLIKELK-KGT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred CChHHHHHHHHHHHccCCh-hHHHHHHHHHc-CCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 3444444455555555553 233222 2222 122 123444555555553 45555555555555
No 293
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.38 E-value=20 Score=32.17 Aligned_cols=46 Identities=7% Similarity=0.024 Sum_probs=34.9
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCe
Q 036237 143 QIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDL 188 (689)
Q Consensus 143 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 188 (689)
++...+.+.+++|+...+..+++.+.+.|++..-..++.--.-+|.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DS 60 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDS 60 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCc
Confidence 4455556778899999999999999999998888887765443443
No 294
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=87.37 E-value=37 Score=34.78 Aligned_cols=147 Identities=12% Similarity=0.036 Sum_probs=76.4
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hhH
Q 036237 381 KVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKP---TAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT--IEH 455 (689)
Q Consensus 381 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~ 455 (689)
...+|..++..+.+.|+++.|...+.++...+..+ +......-....-..|+-++|...++...+. .+..+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 44577788888888888888888888877643211 2223333445556677778888877777641 11111 111
Q ss_pred HHHHHHHHHhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CChHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 036237 456 YGCLVDILCRTGYLEEAKST-IESMPMRPNFVIWMSLLSGARNH------GNKDIGEYAANNLIKVAPDTIGCYVVLSNI 528 (689)
Q Consensus 456 ~~~li~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~ll~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 528 (689)
...+...+.. ..+..... ......+.-...+..+..-+... ++.+.+...|..+.++.|.....+..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111000 00000000 00000000011222223333333 788899999999999999877777777666
Q ss_pred HH
Q 036237 529 YA 530 (689)
Q Consensus 529 ~~ 530 (689)
+.
T Consensus 302 ~~ 303 (352)
T PF02259_consen 302 ND 303 (352)
T ss_pred HH
Confidence 54
No 295
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=87.33 E-value=3.4 Score=28.86 Aligned_cols=51 Identities=16% Similarity=0.270 Sum_probs=38.3
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCCcccEEEECCEEEEEeeCCCCCcChHHHHHHHHHHHHHHHHCCC
Q 036237 521 CYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNKLKAAGH 597 (689)
Q Consensus 521 ~~~~L~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~ 597 (689)
.+..|+.++.+.|++++|.+..+.+.+. +|...++......+.++|.+.|+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 4667888999999999999999998762 35556666666777778887774
No 296
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=87.29 E-value=27 Score=35.87 Aligned_cols=69 Identities=17% Similarity=0.223 Sum_probs=56.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC----CCchhHHHHHHHHHhcCCcchHHHHHHHHHhCCCc
Q 036237 483 PNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAP----DTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFR 551 (689)
Q Consensus 483 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~~~ 551 (689)
....+|..+...++++|+++.|...+.++.+..+ ..+.....-+......|+.++|...++...+..+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~ 216 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLS 216 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Confidence 3456899999999999999999999999988552 24567777889999999999999999888764333
No 297
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=86.99 E-value=32 Score=34.63 Aligned_cols=93 Identities=15% Similarity=0.082 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhcc-CCCCcC---hhhHHHHHHHHHcccchhhHHHHHHHHHHhCCc-----cchh
Q 036237 282 ITWNSMIAGYELNGRFMEALELLETMLI-GDVLPN---DATLVSALSAVAGLAVLNKGRWMHSYIVKNGFV-----VDGV 352 (689)
Q Consensus 282 ~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~---~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~-----~~~~ 352 (689)
.+|-.+..++-+..++.+++.+-+.-.. .|..|. -....++-.+....+.++++.+.|+.+.+.... ....
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 3455555666555566666655444332 122221 112233445566666666666666665542211 1234
Q ss_pred HHhHHHhhHHhcCCHHHHHHHH
Q 036237 353 LGTLLIQMYSKCGSIESALTVF 374 (689)
Q Consensus 353 ~~~~li~~~~~~g~~~~A~~~~ 374 (689)
++-.|...|.+..++++|.-..
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~ 185 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFP 185 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhh
Confidence 5556666666666666554433
No 298
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.99 E-value=1.4 Score=27.15 Aligned_cols=28 Identities=11% Similarity=0.093 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036237 383 GHWTAMIVGLGMHGMATQALDLFNKMCR 410 (689)
Q Consensus 383 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 410 (689)
.+|..+...|...|++++|+..|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3566777777777777777777777766
No 299
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.80 E-value=11 Score=40.25 Aligned_cols=162 Identities=20% Similarity=0.179 Sum_probs=101.3
Q ss_pred CeehHHHHHH-----HHHhCCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHhhcCcCCcchHHHHHHHHH
Q 036237 187 DLVSWNCLID-----GYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYM 261 (689)
Q Consensus 187 ~~~~~~~li~-----~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 261 (689)
++.+|..++. ...-.|+++.|-.++..++++ .-+.++..+.+.|..++|+++-..- ..-.....
T Consensus 580 nVi~y~l~l~vleyqt~vmrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~s~D~--------d~rFelal 648 (794)
T KOG0276|consen 580 NVISYKILLEVLEYQTLVLRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALELSTDP--------DQRFELAL 648 (794)
T ss_pred ceEeEeeehHHHHHHHHhhhccccccccccccCchh---hhhhHHhHhhhccchHhhhhcCCCh--------hhhhhhhh
Confidence 4555544433 334457777777766666532 3445666677778888887663211 11223456
Q ss_pred hcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHH
Q 036237 262 KAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSY 341 (689)
Q Consensus 262 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~ 341 (689)
+.|+++.|.++..+. .+..-|..|..+..+.|++..|.+.|..... |..++-.+...|+-+....+-..
T Consensus 649 ~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~ 717 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASL 717 (794)
T ss_pred hcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHH
Confidence 778888888876653 3567899999999999999999999987754 44566666667766655555555
Q ss_pred HHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHh
Q 036237 342 IVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRA 376 (689)
Q Consensus 342 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 376 (689)
..+.|.. |...-+|...|+++++.+++.+
T Consensus 718 ~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 718 AKKQGKN------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHhhccc------chHHHHHHHcCCHHHHHHHHHh
Confidence 5555421 1222334555666666665544
No 300
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.77 E-value=3.2 Score=35.99 Aligned_cols=53 Identities=9% Similarity=0.100 Sum_probs=41.1
Q ss_pred hcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 036237 497 NHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRG 549 (689)
Q Consensus 497 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~ 549 (689)
..++.+.++.+++.+.-+.|+.+..-..-++.+...|+|++|.++++...+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 36777777777777777888877777777788888888888888888777655
No 301
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=86.42 E-value=19 Score=30.54 Aligned_cols=57 Identities=12% Similarity=0.123 Sum_probs=28.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 036237 387 AMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMI 444 (689)
Q Consensus 387 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 444 (689)
..+..+...|+-+.-.+++.++... -+|++.....+..||.+.|+..++.+++.++-
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~AC 147 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEAC 147 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 3444555555555555555555432 24555555555566666666666666655554
No 302
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=85.91 E-value=17 Score=33.08 Aligned_cols=94 Identities=13% Similarity=0.074 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHhHHhc--CCCCC----hhH
Q 036237 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAI--TFIGVLNACSHAGLVNDGRRYFNMMINDY--GIEPT----IEH 455 (689)
Q Consensus 384 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~--~~~p~----~~~ 455 (689)
.+..+..-|.+.|+.++|++.|.++.+....|... .+..++..+...+++..+.....++..-. +-+++ ...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 45555666666666666666666666654444433 34555566666666666666655554211 11111 112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC
Q 036237 456 YGCLVDILCRTGYLEEAKSTIESM 479 (689)
Q Consensus 456 ~~~li~~~~~~g~~~~A~~~~~~~ 479 (689)
|..|. +...+++.+|-+.|-+.
T Consensus 118 ~~gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHH--HHHhchHHHHHHHHHcc
Confidence 22222 23456777777777665
No 303
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.46 E-value=14 Score=33.03 Aligned_cols=121 Identities=16% Similarity=0.166 Sum_probs=65.2
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChh-HHHHH--HHHHHhcC
Q 036237 392 LGMHGMATQALDLFNKMCRMGMKPTAI-TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIE-HYGCL--VDILCRTG 467 (689)
Q Consensus 392 ~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l--i~~~~~~g 467 (689)
+++.+..++|+.-|..+.+.|...=++ ..........+.|+...|...|+++-.+. -.|-+. -..-| .-++...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt-~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT-SIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC-CCcchhhHHHHHHHHHHHhccc
Confidence 345566667777776666655322111 11222233456677777777777766432 222211 11111 12345667
Q ss_pred CHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 036237 468 YLEEAKSTIESMPMRPN---FVIWMSLLSGARNHGNKDIGEYAANNLIK 513 (689)
Q Consensus 468 ~~~~A~~~~~~~~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 513 (689)
.+++...-.+.+..+.+ ...-.+|.-+-.+.|++..|...|..+..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 77777777766632222 22335566666777888888877777766
No 304
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=85.43 E-value=2.8 Score=41.29 Aligned_cols=79 Identities=13% Similarity=0.024 Sum_probs=56.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC
Q 036237 389 IVGLGMHGMATQALDLFNKMCRMGMKP-TAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTG 467 (689)
Q Consensus 389 i~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 467 (689)
..-|.++|.+++|+..|..... +.| |.+++..-..||.+...+..|..-....+. .| ...+.+|.|.|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia-----Ld----~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA-----LD----KLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH-----hh----HHHHHHHHHHH
Confidence 4569999999999999998876 677 899999999999999998888776665552 11 23456666655
Q ss_pred CHHHHHHHHHh
Q 036237 468 YLEEAKSTIES 478 (689)
Q Consensus 468 ~~~~A~~~~~~ 478 (689)
.-.+++..+.+
T Consensus 173 ~AR~~Lg~~~E 183 (536)
T KOG4648|consen 173 QARESLGNNME 183 (536)
T ss_pred HHHHHHhhHHH
Confidence 44444443333
No 305
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=84.74 E-value=20 Score=35.76 Aligned_cols=63 Identities=16% Similarity=0.193 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCc--HHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 036237 399 TQALDLFNKMCRMGMKPTAI--TFIGVLNACSHAGL--VNDGRRYFNMMINDYGIEPTIEHYGCLVDI 462 (689)
Q Consensus 399 ~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 462 (689)
+++..+|+.+.+.|+..+.. ....++..+..... +.++..+++.+.+ .++++...+|..+.-+
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~-~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKK-NGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHH-cCCccccccccHHHHH
Confidence 56677888888877666533 33333333322222 4577788888874 4888888777665443
No 306
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=84.67 E-value=34 Score=31.84 Aligned_cols=125 Identities=14% Similarity=0.092 Sum_probs=62.2
Q ss_pred CCCHHHHHHHHhcccC-CC-ChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHH--HhcCChHHHHH
Q 036237 68 INNLHYARSIFDRILQ-HP-SLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGA--ARLGAIKEGKQ 143 (689)
Q Consensus 68 ~g~~~~A~~~f~~~~~-~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~--~~~~~~~~a~~ 143 (689)
.|-..-|+-=|.+... .| -+..||-+---+...|+++.|.+.|+...+.... .-|..+=++. --.|++..|.+
T Consensus 78 lGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~---y~Ya~lNRgi~~YY~gR~~LAq~ 154 (297)
T COG4785 78 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT---YNYAHLNRGIALYYGGRYKLAQD 154 (297)
T ss_pred hhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc---chHHHhccceeeeecCchHhhHH
Confidence 3444444444443322 23 2346777777778888888888888887765322 2233333322 23466776666
Q ss_pred HHHHHHHhCCCCch--hHHHHHHHHHHhcCChHHHHH-HHhhCCCCCeehHHHHHHHHH
Q 036237 144 IHGLVFKLGFGFDK--FVLSSLVSMYAKFGEIDLGRR-VFDAMDDKDLVSWNCLIDGYV 199 (689)
Q Consensus 144 ~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~-~~~~m~~~~~~~~~~li~~~~ 199 (689)
=+-..-+.. +.|+ ..|--|+. ..-++.+|.. +.++....|..-|..-|-.|.
T Consensus 155 d~~~fYQ~D-~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~y 209 (297)
T COG4785 155 DLLAFYQDD-PNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFY 209 (297)
T ss_pred HHHHHHhcC-CCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHhccHhhhhHHHHHHH
Confidence 555444443 2222 23333222 1223444443 333444455555655554443
No 307
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=84.50 E-value=1.6 Score=27.16 Aligned_cols=31 Identities=13% Similarity=0.193 Sum_probs=21.6
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCChHHHH
Q 036237 146 GLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGR 177 (689)
Q Consensus 146 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 177 (689)
++.++.. +-+...|+.|...|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 4445554 556777888888888888887775
No 308
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=84.37 E-value=2.5 Score=29.55 Aligned_cols=31 Identities=19% Similarity=0.300 Sum_probs=25.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCCCch
Q 036237 490 SLLSGARNHGNKDIGEYAANNLIKVAPDTIG 520 (689)
Q Consensus 490 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 520 (689)
.+.-++.+.|+++.|.+..+.+++++|+|..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 4566789999999999999999999999853
No 309
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=84.26 E-value=12 Score=29.88 Aligned_cols=60 Identities=23% Similarity=0.211 Sum_probs=43.3
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHH
Q 036237 258 NGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLV 320 (689)
Q Consensus 258 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 320 (689)
..+...|++++|..+.+.+..||...|-+|-.. +.|..+++..-+.+|...| .|...+|.
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 346678899999999998888999999877654 5677777777777776665 44444443
No 310
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=84.23 E-value=15 Score=29.41 Aligned_cols=61 Identities=20% Similarity=0.313 Sum_probs=45.7
Q ss_pred hhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 036237 359 QMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIG 422 (689)
Q Consensus 359 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 422 (689)
..+...|++++|..+.+....||+..|-+|-. .+.|..+++..-+.+|...| .|...+|..
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Faa 107 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFVA 107 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 34567889999999888888889888887755 45677777777777887776 565555544
No 311
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=84.21 E-value=11 Score=34.33 Aligned_cols=94 Identities=17% Similarity=-0.007 Sum_probs=62.1
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCc--ccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC-chh------H
Q 036237 89 LYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDN--FTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGF-DKF------V 159 (689)
Q Consensus 89 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~------~ 159 (689)
.|..+...|.+.|+.+.|++.|.++++....|.. ..+-.+++.+.-.+++..+.....++...--.+ |.. +
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 5777888888899999999999988876544433 356677777788888888887777665442221 221 2
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCC
Q 036237 160 LSSLVSMYAKFGEIDLGRRVFDAMD 184 (689)
Q Consensus 160 ~~~li~~~~~~g~~~~A~~~~~~m~ 184 (689)
|..|.. ...|++..|-+.|-+..
T Consensus 118 ~~gL~~--l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLAN--LAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHH--HHhchHHHHHHHHHccC
Confidence 222222 24577877777776654
No 312
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=83.93 E-value=2.4 Score=25.93 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036237 384 HWTAMIVGLGMHGMATQALDLFNKMCR 410 (689)
Q Consensus 384 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 410 (689)
.|..+...|.+.|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456666777777777777777777665
No 313
>PRK11619 lytic murein transglycosylase; Provisional
Probab=83.75 E-value=82 Score=35.48 Aligned_cols=116 Identities=12% Similarity=0.021 Sum_probs=62.5
Q ss_pred cCCHHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH
Q 036237 395 HGMATQALDLFNKMCRMG-MKPTAI--TFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEE 471 (689)
Q Consensus 395 ~g~~~~A~~l~~~m~~~g-~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 471 (689)
..+.+.|..++....... ..+... ....+.......+..+++...++.... ...+......-+..-.+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~---~~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIM---RSQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccc---ccCCcHHHHHHHHHHHHccCHHH
Confidence 455677888887764432 333322 233333333333224566666665442 11234444455555557888888
Q ss_pred HHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 036237 472 AKSTIESMPM--RPNFVIWMSLLSGARNHGNKDIGEYAANNLIK 513 (689)
Q Consensus 472 A~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 513 (689)
+...|..|+. +-...-.-=+..+....|+.+.|...|+++..
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 8888888742 11112122244555557888888888887643
No 314
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=83.73 E-value=81 Score=35.41 Aligned_cols=58 Identities=17% Similarity=0.274 Sum_probs=35.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhc---CCCCchhH------HHHHHHHHhcCCcchHHHHHHHHH
Q 036237 489 MSLLSGARNHGNKDIGEYAANNLIKV---APDTIGCY------VVLSNIYAAAGQWDKVSEVREMMK 546 (689)
Q Consensus 489 ~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~~~~~~------~~L~~~~~~~g~~~~A~~~~~~m~ 546 (689)
.+++..-.-.|+.++..........+ .|+..... ..+.+.|...|+.++|.....+..
T Consensus 538 L~lm~~~lf~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 538 LNLMGHRLFEGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 33444433368887766666555542 23333222 255666888999999998887654
No 315
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=82.68 E-value=2.7 Score=27.16 Aligned_cols=25 Identities=12% Similarity=0.088 Sum_probs=10.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHh
Q 036237 488 WMSLLSGARNHGNKDIGEYAANNLI 512 (689)
Q Consensus 488 ~~~ll~~~~~~g~~~~a~~~~~~~~ 512 (689)
++.|...|...|++++|+.++++++
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHH
Confidence 3444444444444444444444443
No 316
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.56 E-value=38 Score=31.98 Aligned_cols=23 Identities=4% Similarity=-0.074 Sum_probs=15.8
Q ss_pred HhcCChHHHHHHHHHHhhcCCCC
Q 036237 496 RNHGNKDIGEYAANNLIKVAPDT 518 (689)
Q Consensus 496 ~~~g~~~~a~~~~~~~~~~~p~~ 518 (689)
...+++..|+.+|+++..-.-++
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 45577888888888877644433
No 317
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=82.30 E-value=1.5 Score=25.25 Aligned_cols=24 Identities=17% Similarity=0.200 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHH
Q 036237 520 GCYVVLSNIYAAAGQWDKVSEVRE 543 (689)
Q Consensus 520 ~~~~~L~~~~~~~g~~~~A~~~~~ 543 (689)
.....|+.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456678888888888888887765
No 318
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=82.12 E-value=10 Score=30.44 Aligned_cols=60 Identities=15% Similarity=0.212 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 036237 400 QALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVD 461 (689)
Q Consensus 400 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 461 (689)
+..+-+..+....+-|++....+.|.||.+.+++.-|.++|+.++.+.+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 5556666677777899999999999999999999999999999986544 44447777765
No 319
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.79 E-value=7.5 Score=38.04 Aligned_cols=101 Identities=14% Similarity=0.193 Sum_probs=59.4
Q ss_pred CCCCCchHHHHHhhcccccCCCCHHHHHHHHhcccCCCC------hhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCC
Q 036237 48 NLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQHPS------LVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPD 121 (689)
Q Consensus 48 g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~f~~~~~~~~------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~ 121 (689)
|.+..+.+...++..-.. ...++++...+-++...|+ ...+ +.++-+ -.-++++++.++..=.+-|+.||
T Consensus 59 g~~~s~~~Vd~~V~v~~~--~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irll-lky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISS--REEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLL-LKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhcccc--ccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHH-HccChHHHHHHHhCcchhccccc
Confidence 444444444555554443 5667777766655542222 1111 122222 23366677777777777777777
Q ss_pred cccHHHHHHHHHhcCChHHHHHHHHHHHHhC
Q 036237 122 NFTLPCVIKGAARLGAIKEGKQIHGLVFKLG 152 (689)
Q Consensus 122 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 152 (689)
.++++.+|..+.+.++...|.++...|+...
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 7777777777777777777777776666554
No 320
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=81.68 E-value=74 Score=33.49 Aligned_cols=172 Identities=7% Similarity=0.011 Sum_probs=81.2
Q ss_pred HHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 036237 92 LLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFG 171 (689)
Q Consensus 92 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 171 (689)
.-|.++...| ..+++.+....... ++...+.....++....+......+.+.+ -.++..+....+..+.+.+
T Consensus 43 AhLdgL~~~G--~~a~~~L~~aL~~d--~~~ev~~~aa~al~~~~~~~~~~~L~~~L----~d~~~~vr~aaa~ALg~i~ 114 (410)
T TIGR02270 43 AHVDGLVLAG--KAATELLVSALAEA--DEPGRVACAALALLAQEDALDLRSVLAVL----QAGPEGLCAGIQAALGWLG 114 (410)
T ss_pred HHHHHHHHhh--HhHHHHHHHHHhhC--CChhHHHHHHHHHhccCChHHHHHHHHHh----cCCCHHHHHHHHHHHhcCC
Confidence 3366676677 45666666655432 23333333333333222222122222222 2455556777777777777
Q ss_pred ChHHHHHHHhhCCCCCeehHHHHHHHHHhCCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHhhcCcCCcc
Q 036237 172 EIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLV 251 (689)
Q Consensus 172 ~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 251 (689)
+.+....+...+...+...-.+.+.++...+. +-...+..-+..+|...-..-+.++...+..+..-.+..-....+..
T Consensus 115 ~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~-~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~ 193 (410)
T TIGR02270 115 GRQAEPWLEPLLAASEPPGRAIGLAALGAHRH-DPGPALEAALTHEDALVRAAALRALGELPRRLSESTLRLYLRDSDPE 193 (410)
T ss_pred chHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChHHHHHHHhcCCCHHHHHHHHHHHHhhccccchHHHHHHHcCCCHH
Confidence 76666666655555555554455555554332 11112222222444444455555555555443333322223334555
Q ss_pred hHHHHHHHHHhcCCHHHHHHHH
Q 036237 252 SWNAMINGYMKAGDVDSACELF 273 (689)
Q Consensus 252 ~~~~li~~~~~~g~~~~A~~~~ 273 (689)
+-..-+.+....|. ++|....
T Consensus 194 VR~aA~~al~~lG~-~~A~~~l 214 (410)
T TIGR02270 194 VRFAALEAGLLAGS-RLAWGVC 214 (410)
T ss_pred HHHHHHHHHHHcCC-HhHHHHH
Confidence 55555555555555 4444333
No 321
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=81.66 E-value=1.2e+02 Score=35.92 Aligned_cols=256 Identities=9% Similarity=-0.041 Sum_probs=146.8
Q ss_pred HHHHHHhhCCCCCeehHHHHHHHHHhCCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCCh-HHHHHHHhhcCcCCcchH
Q 036237 175 LGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKV-EIAREIFYRMPNRNLVSW 253 (689)
Q Consensus 175 ~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~ 253 (689)
....+.+.+..+|+..--.-+..+.+.+..+..-.+...+..+|...-...+.++.+.+.. .....+...+..++..+-
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR 701 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVR 701 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHH
Confidence 3345555556777777777777777777654434444555555555555555555444321 111222233334666666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchh
Q 036237 254 NAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLN 333 (689)
Q Consensus 254 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 333 (689)
...++.+...+.- ....+...+..+|...=...+.++.+.+..+. +..... .++...-..+..++...+..+
T Consensus 702 ~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~~ 773 (897)
T PRK13800 702 AAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAGG 773 (897)
T ss_pred HHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhcccc
Confidence 6777777655422 12345556666776665666666666554432 222222 345555555666666665543
Q ss_pred h-HHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHH-HHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036237 334 K-GRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESAL-TVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRM 411 (689)
Q Consensus 334 ~-a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 411 (689)
. +...+..+.+ .+|..+-.+.+..+.+.|..+.+. .+...+..++...-...+.++...+. .++...+..+.+
T Consensus 774 ~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~- 848 (897)
T PRK13800 774 APAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT- 848 (897)
T ss_pred chhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc-
Confidence 2 2233333332 456778888888888888765553 34455555666666667777777765 456677666664
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 036237 412 GMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN 445 (689)
Q Consensus 412 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 445 (689)
.|+...-...+.++.+...-..+...+..+.+
T Consensus 849 --D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 849 --DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred --CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 66776666777777775434566777766664
No 322
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=80.81 E-value=11 Score=29.87 Aligned_cols=63 Identities=14% Similarity=0.193 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 036237 397 MATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVD 461 (689)
Q Consensus 397 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 461 (689)
+.-++.+-++.+....+-|++....+.+.||.+.+++.-|.++|+.++.+.+ .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 3445666667777777899999999999999999999999999998874333 34556666654
No 323
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=80.40 E-value=1.3e+02 Score=35.59 Aligned_cols=49 Identities=6% Similarity=0.019 Sum_probs=21.8
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 036237 451 PTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499 (689)
Q Consensus 451 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g 499 (689)
++...-...+..+++.|..+.+...+..+-..+|..+-..-+.++...+
T Consensus 787 ~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~ 835 (897)
T PRK13800 787 PDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAA 835 (897)
T ss_pred CCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhcc
Confidence 4455555555555555554433222222222344444444444444444
No 324
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.21 E-value=48 Score=30.41 Aligned_cols=114 Identities=10% Similarity=0.056 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH--HHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHH-----HHHHHHhcCCHHHH
Q 036237 400 QALDLFNKMCRMGMKPTAITFI--GVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGC-----LVDILCRTGYLEEA 472 (689)
Q Consensus 400 ~A~~l~~~m~~~g~~p~~~t~~--~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~-----li~~~~~~g~~~~A 472 (689)
+.....+++....-+-..-++. .+...+...+++++|..-++.... .|....+.. |.......|.+++|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~----~t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA----QTKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc----cchhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 5555566666532111112222 234567788899999888887662 133333433 44567788999999
Q ss_pred HHHHHhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 036237 473 KSTIESMPMR-PNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPD 517 (689)
Q Consensus 473 ~~~~~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 517 (689)
+..++....+ -.......-.+.+...|+.++|+..|+++++.+++
T Consensus 146 L~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 146 LKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 9999876421 12222344456788999999999999999998754
No 325
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=80.14 E-value=2.7 Score=27.17 Aligned_cols=28 Identities=25% Similarity=0.374 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 520 GCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 520 ~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
.++..|+.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4788999999999999999999998864
No 326
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.76 E-value=1e+02 Score=34.02 Aligned_cols=77 Identities=10% Similarity=-0.045 Sum_probs=43.6
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhc-C--CcchHHH
Q 036237 468 YLEEAKSTIESMPMRPNFVIWMSLLSGARNH----GNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAA-G--QWDKVSE 540 (689)
Q Consensus 468 ~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~-g--~~~~A~~ 540 (689)
+.+.+..++.+...+-+......|...+..- .+.+.|...+.++.+.. +.....|+.++... | .+..|.+
T Consensus 454 ~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~ 530 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKR 530 (552)
T ss_pred chhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHH
Confidence 4555555555554444444444454444322 35667777776666554 45666777776542 1 1567777
Q ss_pred HHHHHHh
Q 036237 541 VREMMKK 547 (689)
Q Consensus 541 ~~~~m~~ 547 (689)
++++..+
T Consensus 531 ~~~~~~~ 537 (552)
T KOG1550|consen 531 YYDQASE 537 (552)
T ss_pred HHHHHHh
Confidence 7776654
No 327
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=79.52 E-value=3.2 Score=24.26 Aligned_cols=29 Identities=14% Similarity=0.099 Sum_probs=16.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 036237 488 WMSLLSGARNHGNKDIGEYAANNLIKVAP 516 (689)
Q Consensus 488 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 516 (689)
|..+...+...|+++.|...+++.+++.|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 44455555555666666666665555554
No 328
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=79.42 E-value=3.3 Score=25.01 Aligned_cols=27 Identities=30% Similarity=0.188 Sum_probs=14.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCC
Q 036237 491 LLSGARNHGNKDIGEYAANNLIKVAPD 517 (689)
Q Consensus 491 ll~~~~~~g~~~~a~~~~~~~~~~~p~ 517 (689)
+..++.+.|+.++|...++++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 344445555566666666665555553
No 329
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=79.40 E-value=66 Score=31.52 Aligned_cols=57 Identities=11% Similarity=-0.045 Sum_probs=51.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHH
Q 036237 490 SLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMK 546 (689)
Q Consensus 490 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~ 546 (689)
-....|...|.+.+|..+.++++.++|-+...+..|...|+..|+--.|..-++++.
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344568899999999999999999999999999999999999999888888888875
No 330
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=79.14 E-value=73 Score=31.86 Aligned_cols=126 Identities=13% Similarity=0.201 Sum_probs=74.1
Q ss_pred hHHHHHHHHHhccCCCCcChhhHHHHHHHHHc--c----cchhhHHHHHHHHHHhCC---ccchhHHhHHHhhHHhcCCH
Q 036237 297 FMEALELLETMLIGDVLPNDATLVSALSAVAG--L----AVLNKGRWMHSYIVKNGF---VVDGVLGTLLIQMYSKCGSI 367 (689)
Q Consensus 297 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--~----~~~~~a~~i~~~~~~~g~---~~~~~~~~~li~~~~~~g~~ 367 (689)
+++.+.+++.|.+.|++-+..+|.+....... . .....+..+|+.|.+... .++...+.+|+.+ ..+++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556788888888888888877665444333 1 234567888888887643 2334444444433 33333
Q ss_pred ----HHHHHHHHhcCC-----CChhhHHHHHHHHHHc-CC--HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036237 368 ----ESALTVFRAISK-----KKVGHWTAMIVGLGMH-GM--ATQALDLFNKMCRMGMKPTAITFIGVL 424 (689)
Q Consensus 368 ----~~A~~~~~~~~~-----~~~~~~~~li~~~~~~-g~--~~~A~~l~~~m~~~g~~p~~~t~~~ll 424 (689)
+.++..|+.+.+ .|..-+.+-|-++... .. ..++.++++.+.+.|+++....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 445556665544 2222222222222221 11 458899999999999988877766554
No 331
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=79.07 E-value=16 Score=31.06 Aligned_cols=48 Identities=15% Similarity=0.188 Sum_probs=27.1
Q ss_pred ChHHHHHHHHHHhh-cCCC-CchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 500 NKDIGEYAANNLIK-VAPD-TIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 500 ~~~~a~~~~~~~~~-~~p~-~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
+..+++.+++.+.+ -.|. .-...+-|+-.+.+.|+++++.++.+.+.+
T Consensus 50 dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 50 DVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 44556666666665 2332 223444556666666666666666666554
No 332
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=78.77 E-value=13 Score=33.49 Aligned_cols=46 Identities=15% Similarity=0.128 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCC----cchHHHHHHHHH
Q 036237 501 KDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQ----WDKVSEVREMMK 546 (689)
Q Consensus 501 ~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~----~~~A~~~~~~m~ 546 (689)
+++|+.-+++++.++|+...++..|+++|...+. ..+|.++|++..
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~ 100 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT 100 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 4567777888889999999999999999987654 345555555553
No 333
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=78.43 E-value=1.3e+02 Score=34.38 Aligned_cols=193 Identities=14% Similarity=0.089 Sum_probs=106.3
Q ss_pred HhcCCHHHHHHHHHhcCC----CCh-------hhHHHHHH-HHHHcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHH
Q 036237 362 SKCGSIESALTVFRAISK----KKV-------GHWTAMIV-GLGMHGMATQALDLFNKMCRMG----MKPTAITFIGVLN 425 (689)
Q Consensus 362 ~~~g~~~~A~~~~~~~~~----~~~-------~~~~~li~-~~~~~g~~~~A~~l~~~m~~~g----~~p~~~t~~~ll~ 425 (689)
....++++|..++.+... ++. ..|+++-. .....|++++|+++-+.....= ..+..+.+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 345777777777765542 221 25666543 3345688899988888766531 2233445556666
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHH-----HHHHhcCCHH--HHHHHHHhC-----CCCC----CHHHHH
Q 036237 426 ACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLV-----DILCRTGYLE--EAKSTIESM-----PMRP----NFVIWM 489 (689)
Q Consensus 426 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li-----~~~~~~g~~~--~A~~~~~~~-----~~~p----~~~~~~ 489 (689)
+..-.|++++|..+.....+. .-.-++.++...+ ..+...|... +....|... +-+| -..+..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 777788999998887766532 2223333333222 3455667322 222223222 1122 233444
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhh----cCCC--Cc-hhHHHHHHHHHhcCCcchHHHHHHHHHhCCCccCCcccE
Q 036237 490 SLLSGARNHGNKDIGEYAANNLIK----VAPD--TI-GCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRKDPGSSS 558 (689)
Q Consensus 490 ~ll~~~~~~g~~~~a~~~~~~~~~----~~p~--~~-~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 558 (689)
.++.++.+ .+.+..-....++ ..|. ++ ..+..|+.++...|+.++|...++++..-.....+...|
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~ 657 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDY 657 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchH
Confidence 45555444 4444444444443 2222 21 123478888999999999999999987655444333333
No 334
>PRK12798 chemotaxis protein; Reviewed
Probab=78.31 E-value=89 Score=32.43 Aligned_cols=178 Identities=13% Similarity=0.207 Sum_probs=116.8
Q ss_pred cCCHHHHHHHHHhcCC----CChhhHHHHHHH-HHHcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccCcHH
Q 036237 364 CGSIESALTVFRAISK----KKVGHWTAMIVG-LGMHGMATQALDLFNKMCRMGMKPTAI----TFIGVLNACSHAGLVN 434 (689)
Q Consensus 364 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~-~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~ 434 (689)
.|+-++|.+.|..+.. +.+..+-.|+.+ .....++.+|+++|++..- ..|... ....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 6899999999988875 345567777665 4456789999999999775 456533 3333444567889999
Q ss_pred HHHHHHHHhHHhcCCCCChhHH-HHHHHHHHhc---CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 036237 435 DGRRYFNMMINDYGIEPTIEHY-GCLVDILCRT---GYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANN 510 (689)
Q Consensus 435 ~a~~~~~~~~~~~~~~p~~~~~-~~li~~~~~~---g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 510 (689)
++..+-......|...|-...| .-++..+.+. -..+.-..++..|.-.--...|..+...-...|+.+.|....++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 9888877777666666654333 2333344333 34555566666665333456888888999999999999999999
Q ss_pred HhhcCCCCchhHHHHHHHHHh-----cCCcchHHHHHHH
Q 036237 511 LIKVAPDTIGCYVVLSNIYAA-----AGQWDKVSEVREM 544 (689)
Q Consensus 511 ~~~~~p~~~~~~~~L~~~~~~-----~g~~~~A~~~~~~ 544 (689)
+..+... ...-...+..|.. ..+.+++.+.+..
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~ 320 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQ 320 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhc
Confidence 9987643 2333344444443 2334555544443
No 335
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=78.29 E-value=1.2e+02 Score=33.98 Aligned_cols=67 Identities=15% Similarity=0.003 Sum_probs=42.2
Q ss_pred HHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCC-------hHHHHHHHHHHHHhCCCCchh
Q 036237 91 NLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGA-------IKEGKQIHGLVFKLGFGFDKF 158 (689)
Q Consensus 91 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-------~~~a~~~~~~~~~~g~~~~~~ 158 (689)
-++|--+.+.|++++|.++..+.... .......|...+..+....+ -+....-+.+.++.....|++
T Consensus 115 Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 115 WALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp HHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 36778888999999999999666543 45566778888888876532 234445555555554333654
No 336
>PRK10941 hypothetical protein; Provisional
Probab=77.67 E-value=18 Score=35.50 Aligned_cols=62 Identities=11% Similarity=0.030 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 487 IWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 487 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
..+.|-.++.+.++++.|.++.+.++.+.|+++.-.---+-+|.+.|.+..|..-++...+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 34667778899999999999999999999999887888889999999999999988887664
No 337
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=77.36 E-value=44 Score=36.98 Aligned_cols=183 Identities=16% Similarity=0.179 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcCh----------hhHHHHHHHHHcccchhhHHHHHHHHHHhC--Ccc
Q 036237 282 ITWNSMIAGYELNGRFMEALELLETMLIGDVLPND----------ATLVSALSAVAGLAVLNKGRWMHSYIVKNG--FVV 349 (689)
Q Consensus 282 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----------~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g--~~~ 349 (689)
.+-..++-.|....+++..+++.+.+.. -||. +.|.-.++---+-|+-++|..+.--+++.. +.|
T Consensus 202 d~V~nlmlSyRDvQdY~amirLVe~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 202 DTVSNLMLSYRDVQDYDAMIRLVEDLKR---IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred HHHHHHHhhhccccchHHHHHHHHHHHh---CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 3445566678788888888888888765 2332 233334444345566677766655555432 223
Q ss_pred chhHHhHHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHH
Q 036237 350 DGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAIT---FIGVLNA 426 (689)
Q Consensus 350 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t---~~~ll~a 426 (689)
++||-||++-+ .|- +-+.|...+..+.|.+.|++.-+ +.|+..+ +..|+.+
T Consensus 279 ---------Dm~Cl~GRIYK------DmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~a 332 (1226)
T KOG4279|consen 279 ---------DMYCLCGRIYK------DMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRA 332 (1226)
T ss_pred ---------ceeeeechhhh------hhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHH
Confidence 35666666432 111 11234445566778888888776 6777553 4444443
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 036237 427 CSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEY 506 (689)
Q Consensus 427 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 506 (689)
-.+ .++...++ . ..--.|-.+++|.|.++.-.++++-. ..+.+-.-.+|+..|++
T Consensus 333 aG~--~Fens~El----q---------~IgmkLn~LlgrKG~leklq~YWdV~----------~y~~asVLAnd~~kaiq 387 (1226)
T KOG4279|consen 333 AGE--HFENSLEL----Q---------QIGMKLNSLLGRKGALEKLQEYWDVA----------TYFEASVLANDYQKAIQ 387 (1226)
T ss_pred hhh--hccchHHH----H---------HHHHHHHHHhhccchHHHHHHHHhHH----------HhhhhhhhccCHHHHHH
Confidence 321 11111111 1 01123556778999988887777643 23445556688999999
Q ss_pred HHHHHhhcCCCC
Q 036237 507 AANNLIKVAPDT 518 (689)
Q Consensus 507 ~~~~~~~~~p~~ 518 (689)
+.+.|+++.|+.
T Consensus 388 Aae~mfKLk~P~ 399 (1226)
T KOG4279|consen 388 AAEMMFKLKPPV 399 (1226)
T ss_pred HHHHHhccCCce
Confidence 999999998864
No 338
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=76.94 E-value=96 Score=32.05 Aligned_cols=64 Identities=16% Similarity=0.176 Sum_probs=51.1
Q ss_pred CHHHHHHH---HHHHHhcCChHHHHHHHHHHhhcCCC-CchhHHHHHHHHH-hcCCcchHHHHHHHHHh
Q 036237 484 NFVIWMSL---LSGARNHGNKDIGEYAANNLIKVAPD-TIGCYVVLSNIYA-AAGQWDKVSEVREMMKK 547 (689)
Q Consensus 484 ~~~~~~~l---l~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~L~~~~~-~~g~~~~A~~~~~~m~~ 547 (689)
|...|.++ +..+.+.|-+..|.+..+-++.++|. ||-.....++.|+ ++++++--.++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 55556555 45678889999999999999999998 8877778888886 77888878887776654
No 339
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.83 E-value=23 Score=34.90 Aligned_cols=97 Identities=13% Similarity=0.192 Sum_probs=70.0
Q ss_pred hCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC-CC--------hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 036237 345 NGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK-KK--------VGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKP 415 (689)
Q Consensus 345 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~--------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 415 (689)
.|.+....+...++..-....++++++..+-++.. ++ ..+|--+ +-.-++++++.++..=++.|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl----llky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL----LLKYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH----HHccChHHHHHHHhCcchhcccc
Confidence 34555555666677777777888888888777654 21 2223222 22346778998888888899999
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 036237 416 TAITFIGVLNACSHAGLVNDGRRYFNMMIN 445 (689)
Q Consensus 416 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 445 (689)
|..|++.+++.+.+.+++.+|.++.-.|..
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 999999999999999999888887766653
No 340
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=76.46 E-value=2.8 Score=25.36 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=24.9
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 521 CYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 521 ~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
++..++.+|.+.|++++|.+.++++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5678899999999999999999998763
No 341
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=76.02 E-value=18 Score=28.83 Aligned_cols=60 Identities=15% Similarity=0.193 Sum_probs=41.8
Q ss_pred hHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHH-HhCCCCchhHHHHHHH
Q 036237 104 HEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVF-KLGFGFDKFVLSSLVS 165 (689)
Q Consensus 104 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~li~ 165 (689)
-++.+-++.+......|++....+.+++|.+.+++..|.++++-++ +.| .+...|..+++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 3455566666666778888888888888888888888888888766 333 23345555443
No 342
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=75.70 E-value=4.8 Score=24.60 Aligned_cols=27 Identities=19% Similarity=0.137 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036237 384 HWTAMIVGLGMHGMATQALDLFNKMCR 410 (689)
Q Consensus 384 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 410 (689)
+|..+...|.+.|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456666777777777777777777665
No 343
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=75.26 E-value=48 Score=30.01 Aligned_cols=45 Identities=13% Similarity=0.163 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCCCcc
Q 036237 501 KDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRK 552 (689)
Q Consensus 501 ~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~~~~ 552 (689)
++.|...|+++...+|++. .|..-+.+. ++|-++..++.+.+...
T Consensus 96 F~kA~~~FqkAv~~~P~ne-~Y~ksLe~~------~kap~lh~e~~~~~~~~ 140 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNE-LYRKSLEMA------AKAPELHMEIHKQGLGQ 140 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-H-HHHHHHHHH------HTHHHHHHHHHHSSS--
T ss_pred HHHHHHHHHHHHhcCCCcH-HHHHHHHHH------HhhHHHHHHHHHHHhhh
Confidence 5678888999999999774 665555554 36888888887776653
No 344
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=74.82 E-value=2.6 Score=36.82 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=12.7
Q ss_pred hhhHHHHHHHHHhCCCchHHHHHHH
Q 036237 87 LVLYNLLIKCYVFNQRSHEALTLFC 111 (689)
Q Consensus 87 ~~~~~~ll~~~~~~g~~~~a~~~~~ 111 (689)
....|.++..|++.+..+...++++
T Consensus 42 ~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 42 PDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHHHHHHHhcCCchHHHHHcc
Confidence 3444555555555554455544444
No 345
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=74.61 E-value=16 Score=33.65 Aligned_cols=70 Identities=10% Similarity=0.061 Sum_probs=47.1
Q ss_pred HHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC----CchhHHHHHHHHHhcCCcchHH
Q 036237 470 EEAKSTIESMPMRP--NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPD----TIGCYVVLSNIYAAAGQWDKVS 539 (689)
Q Consensus 470 ~~A~~~~~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~L~~~~~~~g~~~~A~ 539 (689)
++|.+.|-++...| +....-.-+..|....|.+.++.++-+++++.+. |+..+..|+.+|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 55666666663333 2233333344455577888999998888884322 5788999999999999988874
No 346
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=74.57 E-value=41 Score=27.41 Aligned_cols=87 Identities=14% Similarity=0.269 Sum_probs=47.9
Q ss_pred chhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036237 331 VLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCR 410 (689)
Q Consensus 331 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 410 (689)
..++|..|.+.+...+- ....+.-.-+..+.+.|++++|...=.....||...|-+|-. .+.|..+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 34566666666665553 222222233445667788888844444444577777776644 467777777777777766
Q ss_pred CCCCCCHHHHH
Q 036237 411 MGMKPTAITFI 421 (689)
Q Consensus 411 ~g~~p~~~t~~ 421 (689)
.| .|....|.
T Consensus 98 ~g-~~~~q~Fa 107 (116)
T PF09477_consen 98 SG-SPELQAFA 107 (116)
T ss_dssp -S-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 55 44444443
No 347
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=74.33 E-value=49 Score=28.90 Aligned_cols=51 Identities=14% Similarity=0.117 Sum_probs=34.9
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 036237 429 HAGLVNDGRRYFNMMINDYGIEPTI-EHYGCLVDILCRTGYLEEAKSTIESMPMR 482 (689)
Q Consensus 429 ~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 482 (689)
..++.+++..+++.|. -+.|+. ..-..-+..+.+.|++++|..+|++....
T Consensus 22 ~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 3677788888887776 456663 33333455677888888888888887543
No 348
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=74.11 E-value=1.3e+02 Score=32.11 Aligned_cols=86 Identities=6% Similarity=0.049 Sum_probs=34.6
Q ss_pred HHHhhHHhcCCHHHHHHHHHhcCC--CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcH
Q 036237 356 LLIQMYSKCGSIESALTVFRAISK--KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLV 433 (689)
Q Consensus 356 ~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 433 (689)
++++.++..-.+.-.+.+-.+|.. .+-..+..++..|.++ ..++-..+|+++.+. .-|.+.+..-+..+...++.
T Consensus 71 ~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~--dfnDvv~~ReLa~~yEkik~ 147 (711)
T COG1747 71 TLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEY--DFNDVVIGRELADKYEKIKK 147 (711)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--cchhHHHHHHHHHHHHHhch
Confidence 344444444444444444433332 2333444444444444 334444444444442 22333333333233333444
Q ss_pred HHHHHHHHHhH
Q 036237 434 NDGRRYFNMMI 444 (689)
Q Consensus 434 ~~a~~~~~~~~ 444 (689)
+.+..+|.++.
T Consensus 148 sk~a~~f~Ka~ 158 (711)
T COG1747 148 SKAAEFFGKAL 158 (711)
T ss_pred hhHHHHHHHHH
Confidence 44444444443
No 349
>PRK09169 hypothetical protein; Validated
Probab=72.79 E-value=2.9e+02 Score=35.62 Aligned_cols=426 Identities=12% Similarity=0.019 Sum_probs=228.8
Q ss_pred CCcccHHHHHHHHHhcCChHHHHHHHHHHHHh-------CCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC-----C--
Q 036237 120 PDNFTLPCVIKGAARLGAIKEGKQIHGLVFKL-------GFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD-----D-- 185 (689)
Q Consensus 120 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~-- 185 (689)
.+...+..+++++++-.+...+...-+.+... -...|..-...++++++|.-+-......-+.+- +
T Consensus 160 l~~~~v~~lLNalSKWP~~~~c~~aa~~lA~~la~~~~l~~al~~q~va~~lnalSKwp~~~~cr~a~~~lA~rL~~~~~ 239 (2316)
T PRK09169 160 LDAISFALLLNALSKWPDNTDCQTAAEQLADRLASDSRLLQAMDAQEVANALNALSKWPDSPRCRNAAERLAERLADEPG 239 (2316)
T ss_pred hhhHHHHHHHHHhccCCCchHHHHHHHHHHHHhccCHHHHHhcchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcChH
Confidence 35566777777777766555444433333111 012334445556677777665554444433322 1
Q ss_pred ----CCeehHHHHHHHHHhCCChHHHHHHHhhC----CC-------CCcchHHHHHHHHHhCCChHHHHH----HHhhcC
Q 036237 186 ----KDLVSWNCLIDGYVKKGEVEVAMKLFDEM----PD-------RDLFSWTCLVDGFSKCGKVEIARE----IFYRMP 246 (689)
Q Consensus 186 ----~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~-------~d~~~~~~li~~~~~~g~~~~A~~----~~~~~~ 246 (689)
-+......+++++.|-.+-+.+...-..+ .. -|.......++++++-.+-+.+.. +-..+.
T Consensus 240 l~~~l~~q~va~~LNAlSKWp~~~~c~~aa~~lA~rla~~~~lr~~~~~Q~vAN~LNALSKwp~~~~cr~aa~~LA~rL~ 319 (2316)
T PRK09169 240 LLQSLRAQEVALLLNALSKWPDDEACRQAAEALAARLAREPGLRLALDPQGVANALNALSKWPDTEACRQAAEALAERLA 319 (2316)
T ss_pred HHHhcCHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHH
Confidence 13344566777777765554433322222 11 155567777888887765443221 111111
Q ss_pred -------cCCcchHHHHHHHHHhcCCHHHHHH----HHHhcC-------CCChHHHHHHHHHHHHcCChHH----HHHHH
Q 036237 247 -------NRNLVSWNAMINGYMKAGDVDSACE----LFDDME-------IRDLITWNSMIAGYELNGRFME----ALELL 304 (689)
Q Consensus 247 -------~~~~~~~~~li~~~~~~g~~~~A~~----~~~~~~-------~~~~~~~~~li~~~~~~g~~~~----A~~~~ 304 (689)
.-+..-....+++++|..+-+.+.. +-+.+. .-|..-....+.++.+.++-+. |..+.
T Consensus 320 ~~~~l~~~~~aQ~vAN~LNALSKWp~~~~c~~Aa~~LA~rL~~~~~l~~~~npQelANaLnALSKwp~~~~cr~AA~aLA 399 (2316)
T PRK09169 320 QERGLLQAMNAQAVANALNALSKWPDEEACRAAAEALAARLARDAGLRRALNAQELANALNALSKWPDEEACRAAAEALA 399 (2316)
T ss_pred hChhhhhhCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHHcCCCchHHHHHHHHHH
Confidence 1345556677788888777665332 222221 1145556667788888776432 33344
Q ss_pred HHhccC-C--CCcChhhHHHHHHHHHcccchhhHHHHHHHHH----Hh---CCccchhHHhHHHhhHHhcCCHHH----H
Q 036237 305 ETMLIG-D--VLPNDATLVSALSAVAGLAVLNKGRWMHSYIV----KN---GFVVDGVLGTLLIQMYSKCGSIES----A 370 (689)
Q Consensus 305 ~~m~~~-g--~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~----~~---g~~~~~~~~~~li~~~~~~g~~~~----A 370 (689)
..+... + -..|..-...++.+|++.+.-+...+....+. .. .-..++.-....+.+++|.++.+. +
T Consensus 400 ~rL~~~~~l~~~fnaQ~vANaLnALsKWp~~~~c~~aa~aLA~rl~~~a~lr~~fn~QeLaN~LnALsKWp~~~~c~~aa 479 (2316)
T PRK09169 400 ARLARDAGLRAALNAQGVANALNALSKWPGAEACRQAALALAARLAADARLRNALSAQELANALNALSKWPDEAACRRAA 479 (2316)
T ss_pred HHHHhchhhhhhcChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhchhhhhhCCHHHHHHHHHHHhcCCchHHHHHHH
Confidence 333322 1 13567778889999998876554433322221 11 112345555667778888776542 2
Q ss_pred HHHHHhcCC-------CChhhHHHHHHHHHHcCCHHHHH----HHHHHHHHC---CCCCCHHHHHHHHHHHhccCcHHHH
Q 036237 371 LTVFRAISK-------KKVGHWTAMIVGLGMHGMATQAL----DLFNKMCRM---GMKPTAITFIGVLNACSHAGLVNDG 436 (689)
Q Consensus 371 ~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~----~l~~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a 436 (689)
..+...+.. -+.--....+.++++-++.+... .+..++... --.-|..-+...+.++++-.+.+.+
T Consensus 480 ~~LA~rl~~~~~l~~af~~Q~lAN~LnALsKwp~~~~c~~aA~aLA~rla~~~~l~~afnpQ~lAN~LnALSKWP~~~~c 559 (2316)
T PRK09169 480 EALAARLAGDAELRQALDAQGLANALNALSKWPDSDACRAAAEALADRLAQDPALLQAMDAQGLANTLNALSKWPEEPDC 559 (2316)
T ss_pred HHHHHHHhcChhhhhhcChHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHcCCCchHH
Confidence 333333322 13445667788888877765532 233333221 1123556677888999987774433
Q ss_pred H----HHHHHhHHhcC--CCCChhHHHHHHHHHHhcCCHHH----HHHHHHhCC------CCCCHHHHHHHHHHHHhcCC
Q 036237 437 R----RYFNMMINDYG--IEPTIEHYGCLVDILCRTGYLEE----AKSTIESMP------MRPNFVIWMSLLSGARNHGN 500 (689)
Q Consensus 437 ~----~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~~~------~~p~~~~~~~ll~~~~~~g~ 500 (689)
. .+...+..+-+ -..+.......+.++++.+.-.. |..+..... ..-|..-+.++++++.+-.+
T Consensus 560 r~AA~aLA~~la~~~~l~~~~naQ~LAN~LnALSKWP~~~acr~Aa~aLA~rla~~~~~~~afn~Q~lAN~LnALSKWP~ 639 (2316)
T PRK09169 560 RAAAEALAARLARRPDLRSALNAQGLANLLNALSKWPDEDACRAAAEALAGRLARDAGLLDAFNAQDLANLLNGLSKWPD 639 (2316)
T ss_pred HHHHHHHHHHHhcChhhhhccCHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHhcCCC
Confidence 3 33333322211 12345677888899999886432 333333331 22477788899999999888
Q ss_pred hHHHHHHHHHHhh---cCC-----CCchhHHHHHHHHHhcCCcchHHHHHHHH
Q 036237 501 KDIGEYAANNLIK---VAP-----DTIGCYVVLSNIYAAAGQWDKVSEVREMM 545 (689)
Q Consensus 501 ~~~a~~~~~~~~~---~~p-----~~~~~~~~L~~~~~~~g~~~~A~~~~~~m 545 (689)
.+........+.. .+| -++.-..++++++++-.+...+.+....+
T Consensus 640 ~~~cr~Aa~aLA~~L~~~~~l~~af~aQ~LaN~LnALSKWp~~~~c~~Aa~aL 692 (2316)
T PRK09169 640 EDDCRQAAEALAARLLRDAGLPRAFDAQGLANALNALSKWPDEAACRAAALAL 692 (2316)
T ss_pred chhHHHHHHHHHHHHhhcchhHHhcCcHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 7765554444432 111 23445667778888877665544444444
No 350
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=72.42 E-value=1.3e+02 Score=31.42 Aligned_cols=60 Identities=13% Similarity=-0.032 Sum_probs=36.9
Q ss_pred hHHHHHhhcccccCCCCHHHHHHHHhcccCCCChh----hHHHHHHHHHhCCCchHHHHHHHHhHh
Q 036237 54 GISSRLLSLYVDPHINNLHYARSIFDRILQHPSLV----LYNLLIKCYVFNQRSHEALTLFCDLLD 115 (689)
Q Consensus 54 ~~~~~ll~~~~~~~~g~~~~A~~~f~~~~~~~~~~----~~~~ll~~~~~~g~~~~a~~~~~~m~~ 115 (689)
.+.+.-...|.. .....+..+.|..-..+..+. -.|-.+.-|+..|+..+|.+..+++..
T Consensus 179 qV~~~aeksyls--ap~hae~ve~~wGg~~n~t~EEvK~kIn~~l~eyv~~getrea~rciR~L~v 242 (645)
T KOG0403|consen 179 QVINTAEKSYLS--APHHAELVELFWGGETNATVEEVKNKINGNLIEYVEIGETREACRCIRELGV 242 (645)
T ss_pred hHHHHHHhhccC--CCchhhHHHhhhCCCccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhCC
Confidence 355555666665 555555555554433111111 256677889999999999888887753
No 351
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=71.86 E-value=19 Score=28.97 Aligned_cols=60 Identities=13% Similarity=0.143 Sum_probs=36.4
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 036237 105 EALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVS 165 (689)
Q Consensus 105 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 165 (689)
+..+-+..+....+.|++....+.|++|.+.+++..|.++++-+...- .+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 445555566666677888888888888888888888888887766442 222225555544
No 352
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=71.52 E-value=47 Score=32.91 Aligned_cols=19 Identities=11% Similarity=0.053 Sum_probs=13.1
Q ss_pred HHHHHHHHHhhcCCCCchh
Q 036237 503 IGEYAANNLIKVAPDTIGC 521 (689)
Q Consensus 503 ~a~~~~~~~~~~~p~~~~~ 521 (689)
.|.+...++++.+|.-|..
T Consensus 380 ~AvEAihRAvEFNPHVPkY 398 (556)
T KOG3807|consen 380 NAVEAIHRAVEFNPHVPKY 398 (556)
T ss_pred HHHHHHHHHhhcCCCCcHH
Confidence 4566777788888866543
No 353
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=70.56 E-value=37 Score=31.32 Aligned_cols=74 Identities=14% Similarity=-0.047 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC--CCCChhHHHHHHHHHHhcCCHHHHH
Q 036237 399 TQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYG--IEPTIEHYGCLVDILCRTGYLEEAK 473 (689)
Q Consensus 399 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~ 473 (689)
++|++.|-++...+.--+......|. .|-...+.++++.++....+-+. -.+|+..+.+|+..|-+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALA-TYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHH-HHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 45666666666554333333333333 33334566666666665553221 1345566666666666666666553
No 354
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=70.04 E-value=8.7 Score=22.04 Aligned_cols=19 Identities=32% Similarity=0.485 Sum_probs=9.0
Q ss_pred HHHHHHHhcCCHHHHHHHH
Q 036237 255 AMINGYMKAGDVDSACELF 273 (689)
Q Consensus 255 ~li~~~~~~g~~~~A~~~~ 273 (689)
.+...+...|++++|+.++
T Consensus 6 ~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 3444444455555554444
No 355
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.90 E-value=2e+02 Score=32.49 Aligned_cols=19 Identities=21% Similarity=0.420 Sum_probs=10.4
Q ss_pred hHHHhhHHhcCCHHHHHHH
Q 036237 355 TLLIQMYSKCGSIESALTV 373 (689)
Q Consensus 355 ~~li~~~~~~g~~~~A~~~ 373 (689)
.-++-.+++.|+-.+|..+
T Consensus 651 ~E~VYlLgrmGn~k~AL~l 669 (846)
T KOG2066|consen 651 EELVYLLGRMGNAKEALKL 669 (846)
T ss_pred HHHHHHHHhhcchHHHHHH
Confidence 3455555666665555544
No 356
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=69.48 E-value=62 Score=33.88 Aligned_cols=125 Identities=19% Similarity=0.121 Sum_probs=73.0
Q ss_pred HHHHHHcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC
Q 036237 389 IVGLGMHGMATQAL-DLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTG 467 (689)
Q Consensus 389 i~~~~~~g~~~~A~-~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 467 (689)
|.--...|+...|- ++|..+....-.|+.+-..+.+ +.+.|+++.+.+.+....+ -+.....+..+++....+.|
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~ 371 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLA 371 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchh
Confidence 33334456665554 4555555544456655444433 4567788887777766653 33445566777777777777
Q ss_pred CHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 036237 468 YLEEAKSTIESMP-MR-PNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPD 517 (689)
Q Consensus 468 ~~~~A~~~~~~~~-~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 517 (689)
++++|...-.-|- .+ .++.+...-.......|-++++...+++++.++|+
T Consensus 372 r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 372 RWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred hHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 8887777776651 11 13333333333445556677777777777776654
No 357
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=69.38 E-value=11 Score=29.94 Aligned_cols=45 Identities=18% Similarity=0.277 Sum_probs=35.1
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 036237 505 EYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRG 549 (689)
Q Consensus 505 ~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~ 549 (689)
...+++.++.+|+|...-..|+..+...|++++|.+.+-.+.+..
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 445677778899999999999999999999999998888877643
No 358
>PF13934 ELYS: Nuclear pore complex assembly
Probab=69.10 E-value=1.1e+02 Score=29.22 Aligned_cols=106 Identities=21% Similarity=0.160 Sum_probs=59.3
Q ss_pred HHHHHHHHH--HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 036237 385 WTAMIVGLG--MHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDI 462 (689)
Q Consensus 385 ~~~li~~~~--~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 462 (689)
|...+.||. .++++++|++.+-.- .+.|+... -++.++...|+.+.|..+++.+. ..-.+......+...
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~---p~l~s~~~~~~~~~~ 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFPD--KILQALLRRGDPKLALRYLRAVG---PPLSSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccHH--HHHHHHHHCCChhHHHHHHHhcC---CCCCCHHHHHHHHHH
Confidence 455555544 356677777766221 12232221 35666666788888888877654 111222233333333
Q ss_pred HHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 036237 463 LCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHG 499 (689)
Q Consensus 463 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g 499 (689)
..+|.+.||..+.+....+-....|..++..|....
T Consensus 151 -La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred -HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 566888888888887653222346666666666443
No 359
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.49 E-value=91 Score=28.09 Aligned_cols=118 Identities=16% Similarity=0.169 Sum_probs=75.1
Q ss_pred HHhcCCHHHHHHHHHhcCCCChhhHHHHH-----HHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHH--HHHhccCc
Q 036237 361 YSKCGSIESALTVFRAISKKKVGHWTAMI-----VGLGMHGMATQALDLFNKMCRMGMKPTAI-TFIGVL--NACSHAGL 432 (689)
Q Consensus 361 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li-----~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll--~a~~~~g~ 432 (689)
+++.+..++|..-|..+.+.+...|-.|. ....+.|+...|...|++.-.....|-.. -...|= -.+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 45667888888888888876665555443 34667788888888888877654444433 222222 23456777
Q ss_pred HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 036237 433 VNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM 479 (689)
Q Consensus 433 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 479 (689)
+++...-.+-+..+ +-+-....-.+|.-+-.+.|++.+|.+.|..+
T Consensus 148 y~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 148 YDDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence 77776666555422 22222344456666667888888888888876
No 360
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=67.90 E-value=59 Score=31.91 Aligned_cols=113 Identities=10% Similarity=0.101 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHhc--cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 036237 397 MATQALDLFNKMCR-MGMKPTAITFIGVLNACSH--AGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAK 473 (689)
Q Consensus 397 ~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~--~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 473 (689)
...+|+.+|+.... ..+--|......+++.... ......-.++.+.+...++-.++..+....++.+++.+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34566666663221 1233344455555554433 12333334455555556677788888888889999999999888
Q ss_pred HHHHhCC----CCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 036237 474 STIESMP----MRPNFVIWMSLLSGARNHGNKDIGEYAAN 509 (689)
Q Consensus 474 ~~~~~~~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 509 (689)
++++... ...|...|..++..-...||.....++.+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 8888752 22367778888888777777665554443
No 361
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=66.30 E-value=1.8e+02 Score=30.68 Aligned_cols=172 Identities=8% Similarity=-0.077 Sum_probs=88.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCeehHHHHHHHHHhCCChHHHH
Q 036237 129 IKGAARLGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAM 208 (689)
Q Consensus 129 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~ 208 (689)
|.++...| +.+...+-...... ++...+-....++....+......+.+.+..++.......++++.+.+...-.-
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d--~~~ev~~~aa~al~~~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~ 120 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEA--DEPGRVACAALALLAQEDALDLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEP 120 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhC--CChhHHHHHHHHHhccCChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHH
Confidence 44555555 34555554444332 222333333333332333333555666666666666777777777777766666
Q ss_pred HHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHhhcCcCCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHH
Q 036237 209 KLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMI 288 (689)
Q Consensus 209 ~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 288 (689)
.+......++.......+.++...+. +-...+...+..++..+-..-+.++++.++.+..-.+-.-....|...=..-+
T Consensus 121 ~L~~~L~~~~p~vR~aal~al~~r~~-~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~VR~aA~ 199 (410)
T TIGR02270 121 WLEPLLAASEPPGRAIGLAALGAHRH-DPGPALEAALTHEDALVRAAALRALGELPRRLSESTLRLYLRDSDPEVRFAAL 199 (410)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhhcc-ChHHHHHHHhcCCCHHHHHHHHHHHHhhccccchHHHHHHHcCCCHHHHHHHH
Confidence 66666655666655556666655432 22222333333455566666666666666543333333333344554444445
Q ss_pred HHHHHcCChHHHHHHHHH
Q 036237 289 AGYELNGRFMEALELLET 306 (689)
Q Consensus 289 ~~~~~~g~~~~A~~~~~~ 306 (689)
.+....|. .+|......
T Consensus 200 ~al~~lG~-~~A~~~l~~ 216 (410)
T TIGR02270 200 EAGLLAGS-RLAWGVCRR 216 (410)
T ss_pred HHHHHcCC-HhHHHHHHH
Confidence 55555555 445444444
No 362
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=66.01 E-value=9.9 Score=25.33 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=23.1
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhCC
Q 036237 523 VVLSNIYAAAGQWDKVSEVREMMKKRG 549 (689)
Q Consensus 523 ~~L~~~~~~~g~~~~A~~~~~~m~~~~ 549 (689)
..|+.+|...|+.+.|++++++....|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 468899999999999999999988643
No 363
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.54 E-value=1.1e+02 Score=28.11 Aligned_cols=54 Identities=13% Similarity=0.019 Sum_probs=25.2
Q ss_pred HhhHHhcCCHHHHHHHHHhcCCCChhh--HHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036237 358 IQMYSKCGSIESALTVFRAISKKKVGH--WTAMIVGLGMHGMATQALDLFNKMCRM 411 (689)
Q Consensus 358 i~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~ 411 (689)
.......|.+|+|...++....++-.+ ...-.+.+...|+-++|..-|++..+.
T Consensus 133 Arvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 133 ARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 334444555555555555544443222 122233455555555555555555543
No 364
>PRK11619 lytic murein transglycosylase; Provisional
Probab=65.06 E-value=2.4e+02 Score=31.80 Aligned_cols=365 Identities=9% Similarity=-0.046 Sum_probs=181.7
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhhCC---CCCeehHHHHHHHHHhCCChHHHHHHHhhCCCCCcchHHHHHHHHHh
Q 036237 155 FDKFVLSSLVSMYAKFGEIDLGRRVFDAMD---DKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSK 231 (689)
Q Consensus 155 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~ 231 (689)
.+.........+....|+.++|......+- ...+...+.++..+.+.|.+.... + |. =+.....
T Consensus 127 ~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~d-~-----------w~-R~~~al~ 193 (644)
T PRK11619 127 KPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPLA-Y-----------LE-RIRLAMK 193 (644)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHHH-H-----------HH-HHHHHHH
Confidence 344444555555666666555544443331 123444555555555555443322 1 11 1223334
Q ss_pred CCChHHHHHHHhhcCcCCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHH--HcCChHHHHHHHHHhcc
Q 036237 232 CGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYE--LNGRFMEALELLETMLI 309 (689)
Q Consensus 232 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~ 309 (689)
.|+...|..+...+..........++..+.+- ..+..++.... ++...-...+.++. ...+.+.|..++.....
T Consensus 194 ~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p---~~~~~~~~~~~-~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~ 269 (644)
T PRK11619 194 AGNTGLVTYLAKQLPADYQTIASALIKLQNDP---NTVETFARTTG-PTDFTRQMAAVAFASVARQDAENARLMIPSLVR 269 (644)
T ss_pred CCCHHHHHHHHHhcChhHHHHHHHHHHHHHCH---HHHHHHhhccC-CChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 55666666665555221122233344433333 33333333321 11111111111221 34556888888887643
Q ss_pred C-CCCcChhh--HHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC--CC-hh
Q 036237 310 G-DVLPNDAT--LVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK--KK-VG 383 (689)
Q Consensus 310 ~-g~~p~~~t--~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~ 383 (689)
. +..++... ...+....+..+..+++...+....... .+..+...-+....+.++++.+...|..|.. .+ ..
T Consensus 270 ~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~r 347 (644)
T PRK11619 270 AQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDE 347 (644)
T ss_pred hcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHh
Confidence 3 23222222 1222222222211444555554433222 2444455556666688999999999988865 22 22
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh------hHHH
Q 036237 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTI------EHYG 457 (689)
Q Consensus 384 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~------~~~~ 457 (689)
-..=+..++...|+.++|...|++... . .+|-.++.+- +.|..-. +. . ...|.. .--.
T Consensus 348 w~YW~aRa~~~~g~~~~A~~~~~~~a~---~---~~fYG~LAa~-~Lg~~~~-------~~-~-~~~~~~~~~~~~~~~~ 411 (644)
T PRK11619 348 WRYWQADLLLEQGRKAEAEEILRQLMQ---Q---RGFYPMVAAQ-RLGEEYP-------LK-I-DKAPKPDSALTQGPEM 411 (644)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHhc---C---CCcHHHHHHH-HcCCCCC-------CC-C-CCCCchhhhhccChHH
Confidence 233456676778999999999998743 1 2344444321 1221100 00 0 000000 0011
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhc---CCCCchhHHHHHHHHHhcCC
Q 036237 458 CLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKV---APDTIGCYVVLSNIYAAAGQ 534 (689)
Q Consensus 458 ~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~~~~~~~~L~~~~~~~g~ 534 (689)
.-+..+...|...+|...+..+....+......+.......|..+.++....+.... .-.-|..|......+++.-.
T Consensus 412 ~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~ 491 (644)
T PRK11619 412 ARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKG 491 (644)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcC
Confidence 234567788999999988887643456666666666667889988888877654331 11123456666777776667
Q ss_pred cchHHHHHHHHHhCCCccCC
Q 036237 535 WDKVSEVREMMKKRGFRKDP 554 (689)
Q Consensus 535 ~~~A~~~~~~m~~~~~~~~~ 554 (689)
++.+.-.--...+.+..|..
T Consensus 492 v~~~lv~ai~rqES~f~p~a 511 (644)
T PRK11619 492 IPQSYAMAIARQESAWNPKA 511 (644)
T ss_pred CCHHHHHHHHHHhcCCCCCC
Confidence 77665433333467776654
No 365
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=64.80 E-value=1e+02 Score=33.20 Aligned_cols=55 Identities=16% Similarity=0.233 Sum_probs=31.2
Q ss_pred HHHhhHHhcCCHHHHHHHHHhcCCC--Chh---hHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036237 356 LLIQMYSKCGSIESALTVFRAISKK--KVG---HWTAMIVGLGMHGMATQALDLFNKMCR 410 (689)
Q Consensus 356 ~li~~~~~~g~~~~A~~~~~~~~~~--~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~ 410 (689)
.|+.-|.+++++++|..++..|.-. ... +.+.+.+.+.+..-.++....++.+..
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 4666788888888888888888642 122 233334444444434444444444443
No 366
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=64.32 E-value=1.1e+02 Score=32.00 Aligned_cols=122 Identities=11% Similarity=0.047 Sum_probs=62.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHh--ccCcHHHHHHHHHHhHHhcCC-CCChhHHHHHHHHHHh
Q 036237 391 GLGMHGMATQALDLFNKMCRMGMKPTAI--TFIGVLNACS--HAGLVNDGRRYFNMMINDYGI-EPTIEHYGCLVDILCR 465 (689)
Q Consensus 391 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~--~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~li~~~~~ 465 (689)
.+...+++..|.++|+++... ++++.. .+..+..+|. ..-++++|.+.++........ .-....+..++...-.
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~ 218 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKELVEVLKA 218 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHH
Confidence 344678999999999999886 555554 3444444443 456778888888877642111 0112233333333322
Q ss_pred cCCHHHHHHHHHhCCCCCCH-HHHHHHHHHHH--hcCChHHHHHHHHHHhh
Q 036237 466 TGYLEEAKSTIESMPMRPNF-VIWMSLLSGAR--NHGNKDIGEYAANNLIK 513 (689)
Q Consensus 466 ~g~~~~A~~~~~~~~~~p~~-~~~~~ll~~~~--~~g~~~~a~~~~~~~~~ 513 (689)
...+.........-..++.. ....-+.++-+ ..|+++.|...+-++++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lE 269 (379)
T PF09670_consen 219 LESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALE 269 (379)
T ss_pred HHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 22222222222111111211 22333334433 35788888776666655
No 367
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=64.19 E-value=19 Score=33.45 Aligned_cols=64 Identities=13% Similarity=0.034 Sum_probs=50.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc
Q 036237 456 YGCLVDILCRTGYLEEAKSTIES-MPMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTI 519 (689)
Q Consensus 456 ~~~li~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 519 (689)
.+.-+..+.+.+.+++|+...++ .+.+| |...-..++..++..|+++.|..-++-+-++.|++.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 44556778888999999887765 45556 555677888899999999999999998888888653
No 368
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=63.86 E-value=11 Score=39.37 Aligned_cols=82 Identities=18% Similarity=0.146 Sum_probs=47.7
Q ss_pred hcCCHHHHHHHHHhC-CCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHH
Q 036237 465 RTGYLEEAKSTIESM-PMRPNFVIW-MSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVR 542 (689)
Q Consensus 465 ~~g~~~~A~~~~~~~-~~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~ 542 (689)
..+.++.|..++.++ ...||-..| ..-..++.+.+++..|+.-+.++++++|.....|+.=+.++.+.+++.+|...+
T Consensus 16 ~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l 95 (476)
T KOG0376|consen 16 KDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDL 95 (476)
T ss_pred ccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHH
Confidence 344445555554443 344543333 222255666667777777777777777766666666666666666666666666
Q ss_pred HHHH
Q 036237 543 EMMK 546 (689)
Q Consensus 543 ~~m~ 546 (689)
+...
T Consensus 96 ~~~~ 99 (476)
T KOG0376|consen 96 EKVK 99 (476)
T ss_pred HHhh
Confidence 5443
No 369
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.27 E-value=56 Score=35.32 Aligned_cols=98 Identities=15% Similarity=0.017 Sum_probs=59.9
Q ss_pred CCCHHHHHHHHhcccCCCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHH
Q 036237 68 INNLHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLGAIKEGKQIHGL 147 (689)
Q Consensus 68 ~g~~~~A~~~f~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 147 (689)
.|+++.|.++..+.. +..-|..|-.+....|++..|.+.|..... |..|+-.+...|+-+....+-..
T Consensus 650 lgrl~iA~~la~e~~---s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~ 717 (794)
T KOG0276|consen 650 LGRLDIAFDLAVEAN---SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASL 717 (794)
T ss_pred cCcHHHHHHHHHhhc---chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHH
Confidence 566777766655443 555677777777777777777777776543 45566666666666655555555
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhC
Q 036237 148 VFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAM 183 (689)
Q Consensus 148 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 183 (689)
..+.| .. |...-+|...|+++++.+++.+-
T Consensus 718 ~~~~g-~~-----N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 718 AKKQG-KN-----NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHhhc-cc-----chHHHHHHHcCCHHHHHHHHHhc
Confidence 55555 22 22233455667777777766543
No 370
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=62.94 E-value=1.2e+02 Score=29.75 Aligned_cols=121 Identities=19% Similarity=0.239 Sum_probs=75.2
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHh-CCCCCCcccHHHHHHHHHh-cC-ChHHHHHHHHHHHHh-CCCCchhHHHHHHH
Q 036237 90 YNLLIKCYVFNQRSHEALTLFCDLLD-RFLLPDNFTLPCVIKGAAR-LG-AIKEGKQIHGLVFKL-GFGFDKFVLSSLVS 165 (689)
Q Consensus 90 ~~~ll~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~t~~~ll~~~~~-~~-~~~~a~~~~~~~~~~-g~~~~~~~~~~li~ 165 (689)
|..|+. ++...-+|+.+|+..-- ..+--|..+...+++.... .+ .+..--++.+.+... |-.++..+....+.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 544442 33445667777763322 2344566666777766654 22 222333344444432 33667777778888
Q ss_pred HHHhcCChHHHHHHHhhCC-----CCCeehHHHHHHHHHhCCChHHHHHHHhh
Q 036237 166 MYAKFGEIDLGRRVFDAMD-----DKDLVSWNCLIDGYVKKGEVEVAMKLFDE 213 (689)
Q Consensus 166 ~~~~~g~~~~A~~~~~~m~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 213 (689)
.+++.+++..-.++++... ..|...|..+|......|+..-...+.++
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 8888888888888877543 34777788888888888888777776655
No 371
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=62.60 E-value=2.2e+02 Score=30.45 Aligned_cols=94 Identities=17% Similarity=0.080 Sum_probs=61.7
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHh
Q 036237 280 DLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQ 359 (689)
Q Consensus 280 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 359 (689)
|....-+++..+.++-.+.-...+..+|+.-| -+...|..++..|... ..++-..+++++++..+. |+.....|++
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44455567777777777777777777777643 4566677777777666 556666677777766543 4455555666
Q ss_pred hHHhcCCHHHHHHHHHhcC
Q 036237 360 MYSKCGSIESALTVFRAIS 378 (689)
Q Consensus 360 ~~~~~g~~~~A~~~~~~~~ 378 (689)
-|-+ ++.+.+...|.++.
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~ 158 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKAL 158 (711)
T ss_pred HHHH-hchhhHHHHHHHHH
Confidence 6665 66677777666654
No 372
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.47 E-value=2.5e+02 Score=31.06 Aligned_cols=82 Identities=10% Similarity=0.078 Sum_probs=45.9
Q ss_pred CHHHHHHHHHhCCCCCCHH--HHHHHHHHHH--hcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhc-CCcchHHHHH
Q 036237 468 YLEEAKSTIESMPMRPNFV--IWMSLLSGAR--NHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAA-GQWDKVSEVR 542 (689)
Q Consensus 468 ~~~~A~~~~~~~~~~p~~~--~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~-g~~~~A~~~~ 542 (689)
+...|.++|......-... .+.++..... ...+.+.|...+.++.+.++ +.+...+...+.-. ++++.+.-.+
T Consensus 343 d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~--~~A~~~~~~~~~~g~~~~~~~~~~~ 420 (552)
T KOG1550|consen 343 DYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN--PSAAYLLGAFYEYGVGRYDTALALY 420 (552)
T ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC--hhhHHHHHHHHHHccccccHHHHHH
Confidence 4556666666653222222 2222222211 23477788888888887763 23444444444322 8888888777
Q ss_pred HHHHhCCCc
Q 036237 543 EMMKKRGFR 551 (689)
Q Consensus 543 ~~m~~~~~~ 551 (689)
..+.+.|..
T Consensus 421 ~~~a~~g~~ 429 (552)
T KOG1550|consen 421 LYLAELGYE 429 (552)
T ss_pred HHHHHhhhh
Confidence 777776654
No 373
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=62.27 E-value=25 Score=33.26 Aligned_cols=80 Identities=9% Similarity=0.081 Sum_probs=55.5
Q ss_pred CHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHH
Q 036237 468 YLEEAKSTIESM-PMRPNFV-IWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMM 545 (689)
Q Consensus 468 ~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m 545 (689)
++.+|..-+.+. .+.|+.. -|..-+-.+.+..+++.+..--.+++++.|+.....+.|+........+++|...+.+.
T Consensus 25 ~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred hhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 344444444332 3456654 34555556667777888888888888888888888888888888888888888888777
Q ss_pred Hh
Q 036237 546 KK 547 (689)
Q Consensus 546 ~~ 547 (689)
.+
T Consensus 105 ~s 106 (284)
T KOG4642|consen 105 YS 106 (284)
T ss_pred HH
Confidence 43
No 374
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=61.38 E-value=19 Score=27.51 Aligned_cols=47 Identities=11% Similarity=0.104 Sum_probs=24.4
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHH
Q 036237 429 HAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKST 475 (689)
Q Consensus 429 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~ 475 (689)
+....++|+..+....++..-.|+ ..+..+|+.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666655543222222 24455566666666666665554
No 375
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=60.94 E-value=28 Score=37.31 Aligned_cols=99 Identities=15% Similarity=0.072 Sum_probs=73.6
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHH
Q 036237 429 HAGLVNDGRRYFNMMINDYGIEPT--IEHYGCLVDILCRTGYLEEAKSTIESM-P-MRPNFVIWMSLLSGARNHGNKDIG 504 (689)
Q Consensus 429 ~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a 504 (689)
-.|+...|...+..... ..|- ......|...+.+.|...+|..++.+. . ....+.++.++..++....+++.|
T Consensus 619 ~~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 46778888888777663 3333 234455777778888888888887664 2 234567888889999999999999
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHH
Q 036237 505 EYAANNLIKVAPDTIGCYVVLSNIYA 530 (689)
Q Consensus 505 ~~~~~~~~~~~p~~~~~~~~L~~~~~ 530 (689)
++.++.++++.|+++.+-..|..+-+
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 99999999999999888777765543
No 376
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.93 E-value=5.2 Score=39.66 Aligned_cols=65 Identities=12% Similarity=0.159 Sum_probs=35.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCCCcc
Q 036237 488 WMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRGFRK 552 (689)
Q Consensus 488 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~~~~ 552 (689)
|..-.+++.+.+....|++-+..+++++|+...-|-.-..+-...|+|++|...+....+.++..
T Consensus 151 ~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~dE 215 (377)
T KOG1308|consen 151 YAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYDE 215 (377)
T ss_pred cccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhccccH
Confidence 33334445555555555666666666666555555555555555566666666655555555443
No 377
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=60.09 E-value=76 Score=33.27 Aligned_cols=132 Identities=15% Similarity=0.092 Sum_probs=83.2
Q ss_pred HHhcCCHHHH-HHHHHhcCC--CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 036237 361 YSKCGSIESA-LTVFRAISK--KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGR 437 (689)
Q Consensus 361 ~~~~g~~~~A-~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 437 (689)
-...|++-.| .++|+.+.. .+++........+...|.++.+...+...... +.....+...++...-..|++++|.
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 3445777665 455555543 23333333344567789999999988776542 3455668888899999999999999
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHH
Q 036237 438 RYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM-P-MRPNFVIWMSLLSGA 495 (689)
Q Consensus 438 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~ 495 (689)
..-+.|..+ .++ +.+....-.-.--..|.++++.-.+++. . ..|...-|..+++.-
T Consensus 378 s~a~~~l~~-eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~ 435 (831)
T PRK15180 378 STAEMMLSN-EIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSST 435 (831)
T ss_pred HHHHHHhcc-ccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeeccc
Confidence 998888843 222 2222222222334567788998888886 2 234555666666653
No 378
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.87 E-value=1.7e+02 Score=27.89 Aligned_cols=89 Identities=12% Similarity=0.169 Sum_probs=50.9
Q ss_pred CcHHHHHHHHHHhHHhcCC-CCChhHHHHHHH---HHHhcCCHHHHHHHHHhCC---CCCCHHHHHH---HHH-H-HHh-
Q 036237 431 GLVNDGRRYFNMMINDYGI-EPTIEHYGCLVD---ILCRTGYLEEAKSTIESMP---MRPNFVIWMS---LLS-G-ARN- 497 (689)
Q Consensus 431 g~~~~a~~~~~~~~~~~~~-~p~~~~~~~li~---~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~---ll~-~-~~~- 497 (689)
.++++|+..|+..-.-+.. +.+...-.|++. .-+..|++.+|.++|++.. ...+..-|.. ++. + |.-
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 4566666666666532222 222233334443 3457788999999998862 2233333432 222 2 222
Q ss_pred cCChHHHHHHHHHHhhcCCCCc
Q 036237 498 HGNKDIGEYAANNLIKVAPDTI 519 (689)
Q Consensus 498 ~g~~~~a~~~~~~~~~~~p~~~ 519 (689)
..|.-.+...+++-.+++|.-.
T Consensus 208 ~~D~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQELDPAFT 229 (288)
T ss_pred cccHHHHHHHHHHHHhcCCccc
Confidence 2677788888889889999643
No 379
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=58.58 E-value=1.1e+02 Score=28.23 Aligned_cols=59 Identities=8% Similarity=0.075 Sum_probs=34.5
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 036237 460 VDILCRTGYLEEAKSTIESM-PMRPNFV-IWMSLLSGARNHGNKDIGEYAANNLIKVAPDT 518 (689)
Q Consensus 460 i~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 518 (689)
.-++.+.+.++.|..-..+. .+.|... ....-..+|-+...++.|+.-|+++++.+|..
T Consensus 141 aaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 141 AAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred HHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcch
Confidence 34455555666555544432 2333211 22222345666678889999999999998854
No 380
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=58.36 E-value=37 Score=26.48 Aligned_cols=36 Identities=8% Similarity=0.109 Sum_probs=20.0
Q ss_pred hcCChHHHHHHHhhCCCCCeehHHHHHHHHHhCCChH
Q 036237 169 KFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVE 205 (689)
Q Consensus 169 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~ 205 (689)
..|+.+.|+++++.++ +.+..|...++++-..|.-+
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHE 83 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchh
Confidence 3455566666666655 55555555555555555443
No 381
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=57.96 E-value=42 Score=26.23 Aligned_cols=38 Identities=13% Similarity=0.128 Sum_probs=21.1
Q ss_pred hcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHH
Q 036237 262 KAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEA 300 (689)
Q Consensus 262 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 300 (689)
..|+.+.|.++++.++ +.+..+..++.++...|...-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 3455555666666655 5555555666665555554433
No 382
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=57.03 E-value=44 Score=33.29 Aligned_cols=92 Identities=13% Similarity=0.125 Sum_probs=72.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHH
Q 036237 454 EHYGCLVDILCRTGYLEEAKSTIESM-P---MRP--NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSN 527 (689)
Q Consensus 454 ~~~~~li~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~ 527 (689)
.+|.-=.+-|.+..++..|...|.+- . -.| +.+.|+.-..+-...||+..++.-..+++.++|.+..+|..=+.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 44555566778888899999888764 1 123 46678887777788899999999999999999999999999999
Q ss_pred HHHhcCCcchHHHHHHHH
Q 036237 528 IYAAAGQWDKVSEVREMM 545 (689)
Q Consensus 528 ~~~~~g~~~~A~~~~~~m 545 (689)
++....++++|....++.
T Consensus 162 c~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 988888877777666543
No 383
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=56.84 E-value=1.1e+02 Score=25.07 Aligned_cols=79 Identities=15% Similarity=0.121 Sum_probs=45.1
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCeehHHHHHHHHHhCCChHHHHHHHhhCC
Q 036237 136 GAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP 215 (689)
Q Consensus 136 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 215 (689)
...++|..|.+.+...+- ....+--.-+..+...|++++|...=.....||...|-+|-. .+.|.-+++...+.++.
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 356777777777777652 233333344445667777877755544555677777766644 36677777777666665
Q ss_pred CC
Q 036237 216 DR 217 (689)
Q Consensus 216 ~~ 217 (689)
..
T Consensus 97 ~~ 98 (116)
T PF09477_consen 97 SS 98 (116)
T ss_dssp T-
T ss_pred hC
Confidence 43
No 384
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=56.29 E-value=5.7e+02 Score=33.24 Aligned_cols=144 Identities=11% Similarity=0.065 Sum_probs=87.8
Q ss_pred HHHHHHHhCCChHHHHHHHhhC----CCCC--cchHHHHHHHHHhCCChHHHHHHHhh-cCcCCcchHHHHHHHHHhcCC
Q 036237 193 CLIDGYVKKGEVEVAMKLFDEM----PDRD--LFSWTCLVDGFSKCGKVEIAREIFYR-MPNRNLVSWNAMINGYMKAGD 265 (689)
Q Consensus 193 ~li~~~~~~g~~~~A~~~~~~m----~~~d--~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~ 265 (689)
++..+-.+.+.+..|+..+++- .+.+ ..-|-.+...|+..+++|....+... ...+ .....|-.....|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~---sl~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADP---SLYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCc---cHHHHHHHHHhhcc
Confidence 4455666778899999988883 2222 22344444588888888887776653 2222 23445667788899
Q ss_pred HHHHHHHHHhcCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHH-HHHHHHcccchhhHHHHHH
Q 036237 266 VDSACELFDDMEIRD---LITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVS-ALSAVAGLAVLNKGRWMHS 340 (689)
Q Consensus 266 ~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~a~~~~~~~~~a~~i~~ 340 (689)
+++|...|+.+...+ ...++-++......|.++..+...+-.... ..+....+++ -..+--+.++++.....+.
T Consensus 1465 ~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 999999999998643 456777777666777777776644443322 1222222222 2223355666666655544
No 385
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=54.72 E-value=2.2e+02 Score=30.27 Aligned_cols=307 Identities=11% Similarity=-0.036 Sum_probs=0.0
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCeehHHHHHHHHHhCCChHHHHHHHhhC
Q 036237 135 LGAIKEGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214 (689)
Q Consensus 135 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 214 (689)
.+.++...+.+..+...|.....+.+|.-+..|.+.|....-..+ ...++|-...-..|+.-..+...+-
T Consensus 30 ~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll---------~el~aL~~~~~~~~~~~~gld~~~~- 99 (696)
T KOG2471|consen 30 NSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLL---------KELEALTADADAPGDVSSGLSLKQG- 99 (696)
T ss_pred CcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHH---------HHHHHHHHhhccccchhcchhhhcc-
Q ss_pred CCCCcchHHHHHHHHHhCCChHHHHHHHhhcCcCC--------cchHHHHHHHHHhcCCHHHHHHHHHhcCCC------C
Q 036237 215 PDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRN--------LVSWNAMINGYMKAGDVDSACELFDDMEIR------D 280 (689)
Q Consensus 215 ~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~ 280 (689)
.+.+....-.|........|+++.......- ..+.......|....+.++|+.+++-+.+. +
T Consensus 100 ----t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~ 175 (696)
T KOG2471|consen 100 ----TVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMK 175 (696)
T ss_pred ----hHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhh
Q 036237 281 LITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQM 360 (689)
Q Consensus 281 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 360 (689)
.+.-+.=.....+.+.+..|..-|--. .|......--++++....++..+..-...+....- .+....-.--+.
T Consensus 176 ~~gn~~~~nn~~kt~s~~aAe~s~~~a-----~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~-~s~~~l~LKsq~ 249 (696)
T KOG2471|consen 176 LVGNHIPANNLLKTLSPSAAERSFSTA-----DLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQ-DSSMALLLKSQL 249 (696)
T ss_pred ccccccchhhhcccCCcchhcccchhh-----ccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcC-CCcHHHHHHHHH
Q ss_pred HHhcCCHHHHHHHHHhcCC------------CChhhHHHHHHHHHHcCCHHHHHHHHHHHHH-------CCCCCC-----
Q 036237 361 YSKCGSIESALTVFRAISK------------KKVGHWTAMIVGLGMHGMATQALDLFNKMCR-------MGMKPT----- 416 (689)
Q Consensus 361 ~~~~g~~~~A~~~~~~~~~------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-------~g~~p~----- 416 (689)
+.-.|++.+|.+++....- .....||.|...+.+.|.+.-+..+|.+..+ .|++|.
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Q ss_pred ------HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 036237 417 ------AITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILC 464 (689)
Q Consensus 417 ------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 464 (689)
..+|+.=+ .+.+.|+.-.|.+.|..... -+..++..|--|.+.+.
T Consensus 330 s~nks~eilYNcG~-~~Lh~grPl~AfqCf~~av~--vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 330 SQNKSMEILYNCGL-LYLHSGRPLLAFQCFQKAVH--VFHRNPRLWLRLAECCI 380 (696)
T ss_pred hcccchhhHHhhhH-HHHhcCCcHHHHHHHHHHHH--HHhcCcHHHHHHHHHHH
No 386
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=54.07 E-value=58 Score=28.30 Aligned_cols=64 Identities=17% Similarity=0.095 Sum_probs=44.6
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCc
Q 036237 469 LEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQW 535 (689)
Q Consensus 469 ~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~ 535 (689)
-+.|.++.+-|+ ...............|++..|..+.+.++..+|++..+-...+++|...|.-
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 355666777664 3333344555667889999999999999999999988888888877665543
No 387
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.05 E-value=2e+02 Score=31.27 Aligned_cols=54 Identities=17% Similarity=0.153 Sum_probs=37.8
Q ss_pred HHHHhcCChHHHHHHHHHHhhcCCC-CchhHHHHHHHHH-hcCCcchHHHHHHHHH
Q 036237 493 SGARNHGNKDIGEYAANNLIKVAPD-TIGCYVVLSNIYA-AAGQWDKVSEVREMMK 546 (689)
Q Consensus 493 ~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~L~~~~~-~~g~~~~A~~~~~~m~ 546 (689)
..+.+.|=+..|....+.++.++|. ||.....+++.|+ ++.+++--+++++..+
T Consensus 350 ~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e 405 (665)
T KOG2422|consen 350 QSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPE 405 (665)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3455667777888888888888877 7777777777776 5666666666666653
No 388
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=53.99 E-value=70 Score=30.48 Aligned_cols=55 Identities=7% Similarity=-0.031 Sum_probs=45.5
Q ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 493 SGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 493 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
.++...|++-+++.....++...|.+..+|+.-+.+.+..=+.++|..-|....+
T Consensus 238 QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 238 QCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 3445668899999999999999999999999988888877777888887777665
No 389
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=53.96 E-value=17 Score=30.95 Aligned_cols=31 Identities=26% Similarity=0.396 Sum_probs=23.9
Q ss_pred CCCchHHHHHHHHhHhCCCCCCcccHHHHHHHH
Q 036237 100 NQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGA 132 (689)
Q Consensus 100 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 132 (689)
.|.-..|..+|+.|++.|-+||. |+.|+..+
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 36667788899999999988875 77777654
No 390
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=53.93 E-value=1.4e+02 Score=29.11 Aligned_cols=87 Identities=13% Similarity=0.138 Sum_probs=53.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH--
Q 036237 389 IVGLGMHGMATQALDLFNKMCRM--GMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILC-- 464 (689)
Q Consensus 389 i~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~-- 464 (689)
|.+++..+++.+++...-+--+. .++|.. .-.-|-.|++.+......++-...... .-.-+..-|..++++|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHH
Confidence 67788888888887765544332 133333 333344577788887777777666643 11222344777666654
Q ss_pred ---hcCCHHHHHHHHHh
Q 036237 465 ---RTGYLEEAKSTIES 478 (689)
Q Consensus 465 ---~~g~~~~A~~~~~~ 478 (689)
-.|.++||++++..
T Consensus 167 VLlPLG~~~eAeelv~g 183 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVG 183 (309)
T ss_pred HHhccccHHHHHHHHhc
Confidence 46889999888844
No 391
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=53.24 E-value=1.2e+02 Score=24.96 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhcc
Q 036237 283 TWNSMIAGYELNGRFMEALELLETMLI 309 (689)
Q Consensus 283 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 309 (689)
-|..|+.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 488999999999999999999999876
No 392
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=52.73 E-value=65 Score=30.39 Aligned_cols=61 Identities=10% Similarity=0.070 Sum_probs=39.2
Q ss_pred HHHHHHHHhcCChH-------HHHHHHHHHhhcC--CC----CchhHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 036237 489 MSLLSGARNHGNKD-------IGEYAANNLIKVA--PD----TIGCYVVLSNIYAAAGQWDKVSEVREMMKKRG 549 (689)
Q Consensus 489 ~~ll~~~~~~g~~~-------~a~~~~~~~~~~~--p~----~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~ 549 (689)
.-+...|+..|+.+ .|...|+++.+.+ |. .......++.++.+.|+.++|.+.|.++...+
T Consensus 122 LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 122 LRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 33344455555533 4445555555422 21 23567788999999999999999999987643
No 393
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=52.35 E-value=26 Score=20.69 Aligned_cols=29 Identities=7% Similarity=0.225 Sum_probs=21.3
Q ss_pred CChHHHHHHHHHHhhcCCCCchhHHHHHH
Q 036237 499 GNKDIGEYAANNLIKVAPDTIGCYVVLSN 527 (689)
Q Consensus 499 g~~~~a~~~~~~~~~~~p~~~~~~~~L~~ 527 (689)
|+.+.+..++++++...|.++..+...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 46778888888888888877666655543
No 394
>PHA02875 ankyrin repeat protein; Provisional
Probab=51.91 E-value=3.1e+02 Score=28.83 Aligned_cols=19 Identities=11% Similarity=0.183 Sum_probs=9.8
Q ss_pred HHHHHhcCChHHHHHHHhh
Q 036237 164 VSMYAKFGEIDLGRRVFDA 182 (689)
Q Consensus 164 i~~~~~~g~~~~A~~~~~~ 182 (689)
+...++.|+.+.+..+++.
T Consensus 72 L~~A~~~g~~~~v~~Ll~~ 90 (413)
T PHA02875 72 LHDAVEEGDVKAVEELLDL 90 (413)
T ss_pred HHHHHHCCCHHHHHHHHHc
Confidence 3344455666555555543
No 395
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=51.53 E-value=93 Score=25.61 Aligned_cols=27 Identities=19% Similarity=0.389 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036237 384 HWTAMIVGLGMHGMATQALDLFNKMCR 410 (689)
Q Consensus 384 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 410 (689)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 488899999999999999999998876
No 396
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=51.19 E-value=1.3e+02 Score=29.47 Aligned_cols=20 Identities=20% Similarity=0.207 Sum_probs=13.7
Q ss_pred HHHHHHcCChHHHHHHHHHh
Q 036237 288 IAGYELNGRFMEALELLETM 307 (689)
Q Consensus 288 i~~~~~~g~~~~A~~~~~~m 307 (689)
|.+++..++|.+++...-+-
T Consensus 90 IQALAEmnrWreVLsWvlqy 109 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQY 109 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHH
Confidence 67777777777777655444
No 397
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=49.85 E-value=54 Score=25.09 Aligned_cols=47 Identities=13% Similarity=-0.007 Sum_probs=32.4
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCcHHHHHHHH
Q 036237 394 MHGMATQALDLFNKMCRMGMKPT--AITFIGVLNACSHAGLVNDGRRYF 440 (689)
Q Consensus 394 ~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~ 440 (689)
...+.++|+..|+...+.-..|. ..++..++.+++..|++.+.+++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888776543333 236777888888888888776653
No 398
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=49.68 E-value=40 Score=22.48 Aligned_cols=24 Identities=13% Similarity=0.057 Sum_probs=13.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC
Q 036237 388 MIVGLGMHGMATQALDLFNKMCRM 411 (689)
Q Consensus 388 li~~~~~~g~~~~A~~l~~~m~~~ 411 (689)
|..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 345555566666666666655543
No 399
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=49.66 E-value=57 Score=25.41 Aligned_cols=60 Identities=15% Similarity=0.190 Sum_probs=39.6
Q ss_pred HHhhcCcCCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHH
Q 036237 241 IFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEA 300 (689)
Q Consensus 241 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 300 (689)
++..+.+.++.+....-...+...+.+.|.++++.++.++..+|..+..++...|...-|
T Consensus 21 v~~~L~~~~Vlt~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 21 LWDHLLSRGVFTPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHhcCCCCHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 444455555555555555555666677778888888877777777777777776655433
No 400
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.42 E-value=22 Score=39.92 Aligned_cols=95 Identities=16% Similarity=0.206 Sum_probs=64.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 036237 395 HGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKS 474 (689)
Q Consensus 395 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 474 (689)
+.++++.+.+.+...--| .++|.-+.+.|..+-|+.+.+.-..+ .++...+|+++.|++
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tR-------------F~LaLe~gnle~ale 664 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTR-------------FELALECGNLEVALE 664 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchh-------------eeeehhcCCHHHHHH
Confidence 456666666554432222 13445556677777666554433222 234457899999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 036237 475 TIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIK 513 (689)
Q Consensus 475 ~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 513 (689)
.-.+.. |..+|..|+.....+|+.+.|+..|++...
T Consensus 665 ~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 665 AAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKN 700 (1202)
T ss_pred HHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 888874 788999999999999999999999887654
No 401
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=49.09 E-value=57 Score=30.13 Aligned_cols=35 Identities=11% Similarity=0.134 Sum_probs=19.3
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 036237 482 RPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAP 516 (689)
Q Consensus 482 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 516 (689)
.|++.++..++.++...|+.++|.+..+++..+.|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 35555555555555555555555555555555555
No 402
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=48.52 E-value=1.2e+02 Score=25.64 Aligned_cols=60 Identities=13% Similarity=0.212 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 036237 400 QALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVD 461 (689)
Q Consensus 400 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 461 (689)
+..+-+..+....+-|++......+.||.+.+++..|.++|+-++. ...+....|..+++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~--K~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD--KCGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH--hcccHHHHHHHHHH
Confidence 4445556666667899999999999999999999999999998875 34444445666554
No 403
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=48.11 E-value=2.5e+02 Score=26.75 Aligned_cols=139 Identities=14% Similarity=0.153 Sum_probs=73.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhH
Q 036237 256 MINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKG 335 (689)
Q Consensus 256 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 335 (689)
.+..|++.-++.-|...++++.+| ..+--+++ -|.+..+..--.++.+-...+++.-+......++ +...|+..+|
T Consensus 136 tMEiyS~ttRFalaCN~s~KIiEP-IQSRCAiL-Rysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQa 211 (333)
T KOG0991|consen 136 TMEIYSNTTRFALACNQSEKIIEP-IQSRCAIL-RYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQA 211 (333)
T ss_pred HHHHHcccchhhhhhcchhhhhhh-HHhhhHhh-hhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHH
Confidence 355666666666666666666554 11111111 1333333222223333333444444444333332 2345555555
Q ss_pred HHHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 036237 336 RWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKP 415 (689)
Q Consensus 336 ~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 415 (689)
...++.-... -| +-.+..+|.-..+|.+.....|+..+. .+++++|.+++.++.+.|..|
T Consensus 212 lNnLQst~~g------------------~g-~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp 271 (333)
T KOG0991|consen 212 LNNLQSTVNG------------------FG-LVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSP 271 (333)
T ss_pred HHHHHHHhcc------------------cc-ccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCH
Confidence 4443322110 01 112345666666677777777777554 567999999999999999888
Q ss_pred CHH
Q 036237 416 TAI 418 (689)
Q Consensus 416 ~~~ 418 (689)
...
T Consensus 272 ~Di 274 (333)
T KOG0991|consen 272 EDI 274 (333)
T ss_pred HHH
Confidence 654
No 404
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.75 E-value=5.6e+02 Score=30.65 Aligned_cols=79 Identities=10% Similarity=-0.020 Sum_probs=38.4
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHH
Q 036237 420 FIGVLNACSHAGLVNDGRRYFNMMINDYGIEPT----IEHYGCLVDILCRTGYLEEAKSTIESMPMR-PNFVIWMSLLSG 494 (689)
Q Consensus 420 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~ll~~ 494 (689)
|..++.-+...+..+.+.++-..+++ .+.++ ..+++++.+-....|.+-+|...+-+.+.. ........|+..
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe--~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlviv 1063 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIE--NLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIV 1063 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 44455555555555665555555553 22222 234555555566666666666655544211 112234444444
Q ss_pred HHhcCC
Q 036237 495 ARNHGN 500 (689)
Q Consensus 495 ~~~~g~ 500 (689)
+...|.
T Consensus 1064 Lfecg~ 1069 (1480)
T KOG4521|consen 1064 LFECGE 1069 (1480)
T ss_pred HHhccc
Confidence 444443
No 405
>PRK10941 hypothetical protein; Provisional
Probab=47.72 E-value=1.4e+02 Score=29.36 Aligned_cols=65 Identities=11% Similarity=0.002 Sum_probs=50.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchh
Q 036237 457 GCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGC 521 (689)
Q Consensus 457 ~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 521 (689)
+.|-..|.+.++++.|+...+.+ .+.| |+.-|.--.-.|.+.|....|..-++..++..|+++.+
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 45666778888888888888876 3444 45567777777888999999999999999988888754
No 406
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=47.70 E-value=1.5e+02 Score=25.95 Aligned_cols=79 Identities=13% Similarity=0.075 Sum_probs=39.5
Q ss_pred HHHHHHHHhCCCchHHHHHHHHhHhCCC-----CCCcccHHHHHHHHHhcCC-hHHHHHHHHHHHHhCCCCchhHHHHHH
Q 036237 91 NLLIKCYVFNQRSHEALTLFCDLLDRFL-----LPDNFTLPCVIKGAARLGA-IKEGKQIHGLVFKLGFGFDKFVLSSLV 164 (689)
Q Consensus 91 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~-----~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~li 164 (689)
|.++.-.+..+++...+.+++.+..... ..+...|.+++++.+.... --.+..+|..+.+.+.+.++.-|..+|
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4444444444555544444444432100 1234456666666654444 334555666666555556666666666
Q ss_pred HHHHh
Q 036237 165 SMYAK 169 (689)
Q Consensus 165 ~~~~~ 169 (689)
....+
T Consensus 123 ~~~l~ 127 (145)
T PF13762_consen 123 KAALR 127 (145)
T ss_pred HHHHc
Confidence 55543
No 407
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=47.60 E-value=1.4e+02 Score=25.63 Aligned_cols=31 Identities=13% Similarity=0.106 Sum_probs=26.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcCCCCc
Q 036237 489 MSLLSGARNHGNKDIGEYAANNLIKVAPDTI 519 (689)
Q Consensus 489 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 519 (689)
.-|.-++.+.++++.+.+..+.+++.+|+|.
T Consensus 75 yYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 75 YYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 3455678889999999999999999999875
No 408
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=46.98 E-value=2e+02 Score=25.17 Aligned_cols=48 Identities=15% Similarity=0.198 Sum_probs=23.5
Q ss_pred hhhHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 036237 382 VGHWTAMIVGLGMHGM-ATQALDLFNKMCRMGMKPTAITFIGVLNACSH 429 (689)
Q Consensus 382 ~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 429 (689)
-.+|.+++.+.++..- ---+..+|.-|++.+.+++..-|..++.+|.+
T Consensus 79 ~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 79 NSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred cchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 3345555555543333 22344555555555555555555555555543
No 409
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=46.97 E-value=63 Score=20.42 Aligned_cols=30 Identities=13% Similarity=-0.068 Sum_probs=16.4
Q ss_pred HHHHHHHHHhcCChHHHHHH--HHHHhhcCCC
Q 036237 488 WMSLLSGARNHGNKDIGEYA--ANNLIKVAPD 517 (689)
Q Consensus 488 ~~~ll~~~~~~g~~~~a~~~--~~~~~~~~p~ 517 (689)
|-++...+-..|++++|+.+ ++-+..++|.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 44555556666667777666 3355555543
No 410
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=45.45 E-value=1.3e+02 Score=25.60 Aligned_cols=42 Identities=12% Similarity=0.138 Sum_probs=33.4
Q ss_pred HHHHHHHHHhh--cCCCCchhHHHHHHHHHhcCCcchHHHHHHH
Q 036237 503 IGEYAANNLIK--VAPDTIGCYVVLSNIYAAAGQWDKVSEVREM 544 (689)
Q Consensus 503 ~a~~~~~~~~~--~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~ 544 (689)
.+..+|+.+.. +.-..+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77778887766 5566677888999999999999999998864
No 411
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.07 E-value=3e+02 Score=26.73 Aligned_cols=182 Identities=9% Similarity=0.012 Sum_probs=111.8
Q ss_pred cCChHHHHHHHHHhccCCCCcChh---hHHHHHHHHHcccchhhHHHHHHHHHH---hCCc--cchhHHhHHHhhHHhcC
Q 036237 294 NGRFMEALELLETMLIGDVLPNDA---TLVSALSAVAGLAVLNKGRWMHSYIVK---NGFV--VDGVLGTLLIQMYSKCG 365 (689)
Q Consensus 294 ~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a~~~~~~~~~a~~i~~~~~~---~g~~--~~~~~~~~li~~~~~~g 365 (689)
..++++|+.-|++.++....-... ....++....+++++++....+.++.. +.+. .+....|++++--....
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 346788888888776532222222 334556777888888888777776642 2222 23456677777777666
Q ss_pred CHHHHHHHHHhcCC-----CChh----hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC----C-------HHHHHHHHH
Q 036237 366 SIESALTVFRAISK-----KKVG----HWTAMIVGLGMHGMATQALDLFNKMCRMGMKP----T-------AITFIGVLN 425 (689)
Q Consensus 366 ~~~~A~~~~~~~~~-----~~~~----~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p----~-------~~t~~~ll~ 425 (689)
+.+--.+.++.-.+ ++-. +-+.|...|...|.+.+-.++++++...--.. | ...|..=+.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 66665555554321 2322 33567778888888999999998887542111 1 124666667
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHH----HHHHHhcCCHHHHHHH
Q 036237 426 ACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCL----VDILCRTGYLEEAKST 475 (689)
Q Consensus 426 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l----i~~~~~~g~~~~A~~~ 475 (689)
.|....+-..-..+|+....-..-.|.+.....+ ..+..+.|++++|..-
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTD 253 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTD 253 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhH
Confidence 7777777777777787766433444555443322 3456788899887543
No 412
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=44.82 E-value=77 Score=29.28 Aligned_cols=51 Identities=16% Similarity=0.003 Sum_probs=29.4
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 036237 429 HAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM 479 (689)
Q Consensus 429 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 479 (689)
...+.+......+.+.+-....|++.+|..++..+...|+.++|.+...++
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444444444444444333345666666666677777777777776666665
No 413
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=44.26 E-value=58 Score=25.90 Aligned_cols=52 Identities=12% Similarity=0.117 Sum_probs=35.4
Q ss_pred HhcCChHHHHHHHHHHhhcCCC----C-----chhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 496 RNHGNKDIGEYAANNLIKVAPD----T-----IGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 496 ~~~g~~~~a~~~~~~~~~~~p~----~-----~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
.+.||+..|.+.+.+.+..... . ..+...++.+....|++++|...+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4567777777766666552211 1 22345677888899999999999988764
No 414
>PRK13342 recombination factor protein RarA; Reviewed
Probab=43.89 E-value=4.2e+02 Score=28.02 Aligned_cols=46 Identities=22% Similarity=0.159 Sum_probs=31.8
Q ss_pred hHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 036237 384 HWTAMIVGLGM---HGMATQALDLFNKMCRMGMKPTAITFIGVLNACSH 429 (689)
Q Consensus 384 ~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 429 (689)
....+++++.+ .++++.|+..+..|.+.|..|..+.-..+..++..
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ed 277 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASED 277 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 34455555554 47899999999999999988876655544444433
No 415
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=43.09 E-value=2.4e+02 Score=26.96 Aligned_cols=117 Identities=7% Similarity=-0.061 Sum_probs=67.3
Q ss_pred HHhcCCHHHHHHHHHhcCC--CCh-hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCcHHHH
Q 036237 361 YSKCGSIESALTVFRAISK--KKV-GHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAIT-FIGVLNACSHAGLVNDG 436 (689)
Q Consensus 361 ~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a 436 (689)
|....+++.|...+.+... |.+ .-|+.-+.++.+..+++.+..--++.++ +.||.+- ...+..+......+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 4445567777776666543 444 3456677777778888877776666665 6777663 33344555666777777
Q ss_pred HHHHHHhHH---hcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 036237 437 RRYFNMMIN---DYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESM 479 (689)
Q Consensus 437 ~~~~~~~~~---~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 479 (689)
+..+.+... ...+.|.......|.++=-..=...++.++.++.
T Consensus 98 I~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 98 IKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 777766632 2233344455555544433333344444444443
No 416
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=42.69 E-value=3.6e+02 Score=27.02 Aligned_cols=86 Identities=14% Similarity=0.001 Sum_probs=58.7
Q ss_pred ccCcHHHHHHHHHHhHHhcCC---CCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 036237 429 HAGLVNDGRRYFNMMINDYGI---EPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGE 505 (689)
Q Consensus 429 ~~g~~~~a~~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 505 (689)
..+-.++|.+.|+.......- ..++.....+.....+.|..++-..+++.....++...-..++.+.....+.+.-.
T Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~ 221 (324)
T PF11838_consen 142 DPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLK 221 (324)
T ss_dssp -HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHH
T ss_pred chhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHH
Confidence 344467888889888752111 34556667777778888887776666666655567888889999998899999988
Q ss_pred HHHHHHhhc
Q 036237 506 YAANNLIKV 514 (689)
Q Consensus 506 ~~~~~~~~~ 514 (689)
++++.++.-
T Consensus 222 ~~l~~~l~~ 230 (324)
T PF11838_consen 222 RLLDLLLSN 230 (324)
T ss_dssp HHHHHHHCT
T ss_pred HHHHHHcCC
Confidence 999988883
No 417
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=41.17 E-value=45 Score=32.70 Aligned_cols=59 Identities=15% Similarity=0.177 Sum_probs=32.4
Q ss_pred HhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhH
Q 036237 464 CRTGYLEEAKSTIESM-PMRPN-FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCY 522 (689)
Q Consensus 464 ~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 522 (689)
.+.|+.++|..+|+.. ...|+ +.....+..-.-.++++-+|.++|-+++.+.|.+..++
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseAL 187 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEAL 187 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHH
Confidence 4566666666666653 33343 23333333334445566666666666666666665443
No 418
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=40.22 E-value=1.2e+02 Score=31.75 Aligned_cols=57 Identities=16% Similarity=0.262 Sum_probs=39.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhcC-----------CCChHHHHHHHHHHHHcCChHHHHHHHHHhc
Q 036237 252 SWNAMINGYMKAGDVDSACELFDDME-----------IRDLITWNSMIAGYELNGRFMEALELLETML 308 (689)
Q Consensus 252 ~~~~li~~~~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 308 (689)
+...|++.++-.|++..|+++++.+. .-.+.++--+.-+|...+++.+|++.|...+
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666666677777766666554 2245567777888888899999998888764
No 419
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=39.69 E-value=3.8e+02 Score=26.40 Aligned_cols=19 Identities=21% Similarity=0.181 Sum_probs=13.2
Q ss_pred HHHHHhcCCcchHHHHHHH
Q 036237 526 SNIYAAAGQWDKVSEVREM 544 (689)
Q Consensus 526 ~~~~~~~g~~~~A~~~~~~ 544 (689)
+..+.+.++|++|.+.++-
T Consensus 253 ~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 253 GKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHHHhhcCHHHHHHHHHH
Confidence 4446667788888877764
No 420
>PHA02875 ankyrin repeat protein; Provisional
Probab=38.77 E-value=4.8e+02 Score=27.32 Aligned_cols=20 Identities=5% Similarity=0.047 Sum_probs=9.0
Q ss_pred HHHHHHhcCCHHHHHHHHHh
Q 036237 256 MINGYMKAGDVDSACELFDD 275 (689)
Q Consensus 256 li~~~~~~g~~~~A~~~~~~ 275 (689)
++...+..|+.+-+.-+++.
T Consensus 205 ~l~~A~~~~~~~iv~~Ll~~ 224 (413)
T PHA02875 205 ALCYAIENNKIDIVRLFIKR 224 (413)
T ss_pred HHHHHHHcCCHHHHHHHHHC
Confidence 33333444555544444443
No 421
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=38.52 E-value=1.6e+02 Score=23.28 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=15.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHhh
Q 036237 491 LLSGARNHGNKDIGEYAANNLIK 513 (689)
Q Consensus 491 ll~~~~~~g~~~~a~~~~~~~~~ 513 (689)
+.......|+.++|...++++++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 34445566777777777777766
No 422
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=38.36 E-value=59 Score=32.09 Aligned_cols=41 Identities=24% Similarity=0.334 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036237 384 HWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVL 424 (689)
Q Consensus 384 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 424 (689)
-|+..|..-.+.|+.++|+.++++..+.|+.--..||...+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 46788999999999999999999999998766666665443
No 423
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=37.60 E-value=2e+02 Score=22.64 Aligned_cols=62 Identities=19% Similarity=0.167 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC--CchhHHHHHHHHHhcCCcc-hHHHHHHHH
Q 036237 484 NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPD--TIGCYVVLSNIYAAAGQWD-KVSEVREMM 545 (689)
Q Consensus 484 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~L~~~~~~~g~~~-~A~~~~~~m 545 (689)
|......+...+...|+++.|...+-.+++.+|+ +...-..|+.++.-.|.-+ -+.+++.+|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 4556666777777788888888877777776654 3455566666666666543 444444443
No 424
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=37.19 E-value=7.2e+02 Score=28.83 Aligned_cols=219 Identities=15% Similarity=0.117 Sum_probs=114.9
Q ss_pred HHHcCChHHHHHHHHHhccCCCCcChhh----H--HHHHHHH--HcccchhhHHHHHHHHHHh----CCccchhHHhHHH
Q 036237 291 YELNGRFMEALELLETMLIGDVLPNDAT----L--VSALSAV--AGLAVLNKGRWMHSYIVKN----GFVVDGVLGTLLI 358 (689)
Q Consensus 291 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~--~~ll~a~--~~~~~~~~a~~i~~~~~~~----g~~~~~~~~~~li 358 (689)
.....++.+|..+..+....-..|+... + ...+.+. ...|+++.+..+-+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 3456788888888877754322222221 1 1122222 3457788888777766543 3345566777788
Q ss_pred hhHHhcCCHHHHHHHHHhcCCC----Chh---hHHHHHH--HHHHcCCHHH--HHHHHHHHHHC--CCCC----CHHHHH
Q 036237 359 QMYSKCGSIESALTVFRAISKK----KVG---HWTAMIV--GLGMHGMATQ--ALDLFNKMCRM--GMKP----TAITFI 421 (689)
Q Consensus 359 ~~~~~~g~~~~A~~~~~~~~~~----~~~---~~~~li~--~~~~~g~~~~--A~~l~~~m~~~--g~~p----~~~t~~ 421 (689)
.+..-.|++++|..+.....+. ++. .|..+.. .+..+|+... .+..|...... +-+| -..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 8888889999998887766542 333 3444433 3455663332 23333332221 1112 223455
Q ss_pred HHHHHHhcc-CcHHHHHHHHHHhHHhcCCCCChhHH--HHHHHHHHhcCCHHHHHHHHHhCC-----C--CCCHHHHHHH
Q 036237 422 GVLNACSHA-GLVNDGRRYFNMMINDYGIEPTIEHY--GCLVDILCRTGYLEEAKSTIESMP-----M--RPNFVIWMSL 491 (689)
Q Consensus 422 ~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~~~-----~--~p~~~~~~~l 491 (689)
.++.++.+. +...++..-+.--. .+...|-..-+ ..|+..+...|++++|...++++. . .++...-..+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~-~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGS-VYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhh-hcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 555555541 22222222222222 11222222222 367888889999999999888872 1 1222222222
Q ss_pred HHH--HHhcCChHHHHHHHHH
Q 036237 492 LSG--ARNHGNKDIGEYAANN 510 (689)
Q Consensus 492 l~~--~~~~g~~~~a~~~~~~ 510 (689)
+.. ....||.+.+.....+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 222 2456787777666555
No 425
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=36.31 E-value=1.3e+02 Score=23.79 Aligned_cols=56 Identities=5% Similarity=0.116 Sum_probs=34.9
Q ss_pred HHhhcCcCCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC
Q 036237 241 IFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGR 296 (689)
Q Consensus 241 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 296 (689)
++..+.+.++.+-...-...+...+.+.+.++++.++.+++.+|..+..++...|.
T Consensus 25 v~~~L~~~gvlt~~~~~~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 25 LLIHLLQKDILTDSMAESIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQ 80 (90)
T ss_pred HHHHHHHcCCCCHHHHHHHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcCh
Confidence 33333444444444444445555667777788888777777777777777765444
No 426
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=35.66 E-value=5.2e+02 Score=26.73 Aligned_cols=96 Identities=15% Similarity=0.134 Sum_probs=55.7
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHH-hcCCHHHHHHHHHhCCC--C-------CCHHHHHHH
Q 036237 424 LNACSHAGLVNDGRRYFNMMINDYGIEPT--IEHYGCLVDILC-RTGYLEEAKSTIESMPM--R-------PNFVIWMSL 491 (689)
Q Consensus 424 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~-~~g~~~~A~~~~~~~~~--~-------p~~~~~~~l 491 (689)
+..+.+.|-+..|.++.+.+. .+.|+ +...-.+||.|+ ++++++--.++.+.... . |+ ..|..-
T Consensus 110 i~~L~~RG~~rTAlE~~KlLl---sLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn-~a~S~a 185 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLL---SLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN-FAFSIA 185 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHH---hcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc-HHHHHH
Confidence 345667777888887777776 44554 444445566664 66677666666665422 1 21 223322
Q ss_pred HHHHHhcCCh---------------HHHHHHHHHHhhcCCCCchhHHHHHH
Q 036237 492 LSGARNHGNK---------------DIGEYAANNLIKVAPDTIGCYVVLSN 527 (689)
Q Consensus 492 l~~~~~~g~~---------------~~a~~~~~~~~~~~p~~~~~~~~L~~ 527 (689)
+ ++...++. +.|...+.+++...| .++..|..
T Consensus 186 L-A~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP---~vl~~Ll~ 232 (360)
T PF04910_consen 186 L-AYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFP---WVLVPLLD 232 (360)
T ss_pred H-HHHHhcCccccccccccccccchhHHHHHHHHHHHHhH---HHHHHHHH
Confidence 3 23334444 788888888888877 34444443
No 427
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=35.39 E-value=1.8e+02 Score=26.54 Aligned_cols=28 Identities=14% Similarity=0.217 Sum_probs=18.5
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCch
Q 036237 492 LSGARNHGNKDIGEYAANNLIKVAPDTIG 520 (689)
Q Consensus 492 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 520 (689)
+..|.+.|.+++|.+++++.++ +|++..
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~-d~~~~~ 145 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS-DPESQK 145 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-CCCchh
Confidence 3457777777777777777776 665543
No 428
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=35.21 E-value=81 Score=24.57 Aligned_cols=35 Identities=9% Similarity=0.237 Sum_probs=19.2
Q ss_pred hcCChHHHHHHHhhCCCCCeehHHHHHHHHHhCCC
Q 036237 169 KFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGE 203 (689)
Q Consensus 169 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~ 203 (689)
...+.+.|.++++.++.+...+|.+...++-..|.
T Consensus 42 ~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~ 76 (84)
T cd08326 42 AGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQ 76 (84)
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc
Confidence 33445555555555555555555555555555443
No 429
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=35.21 E-value=68 Score=23.22 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=11.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 036237 387 AMIVGLGMHGMATQALDLFNKMC 409 (689)
Q Consensus 387 ~li~~~~~~g~~~~A~~l~~~m~ 409 (689)
.+|.||.+.|++++|.+..+++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34555555555555555555544
No 430
>PF15161 Neuropep_like: Neuropeptide-like
Probab=34.60 E-value=22 Score=24.59 Aligned_cols=16 Identities=31% Similarity=0.798 Sum_probs=11.7
Q ss_pred ccccccchhhHHHHhhh
Q 036237 645 NLRVCNDCHSVTKLLSG 661 (689)
Q Consensus 645 ~~~~c~~~~~~~~~~s~ 661 (689)
--|-|.|||.+. |+.+
T Consensus 12 esRPCVDCHAFe-fmqR 27 (65)
T PF15161_consen 12 ESRPCVDCHAFE-FMQR 27 (65)
T ss_pred CCCCchhhHHHH-HHHH
Confidence 358899999766 5554
No 431
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=34.34 E-value=57 Score=30.73 Aligned_cols=56 Identities=20% Similarity=0.303 Sum_probs=35.0
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 036237 463 LCRTGYLEEAKSTIESM-PMRP-NFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDT 518 (689)
Q Consensus 463 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 518 (689)
..+.|+.+.|.+++.+. ...| ....|-.+...--+.|+.+.|.+.+++.++++|++
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34556666666666554 2233 34466666666667777777777777777777654
No 432
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=34.24 E-value=1.1e+02 Score=30.16 Aligned_cols=55 Identities=13% Similarity=0.153 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCC---CCeehHHHHHHHHHhCCChHHHHHHHhhC
Q 036237 160 LSSLVSMYAKFGEIDLGRRVFDAMDD---KDLVSWNCLIDGYVKKGEVEVAMKLFDEM 214 (689)
Q Consensus 160 ~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 214 (689)
.+.....|..+|.+.+|.++.++... -+...|-.++..++..|+--.|.+-++++
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 34445566666777777666665553 24455666666777776655555555554
No 433
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=33.98 E-value=6.9e+02 Score=27.72 Aligned_cols=377 Identities=12% Similarity=0.038 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhhCCCCCeehHHHHHHHHHhCCChHHHHHHHhhCC----------CCCcchHHHH
Q 036237 156 DKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMP----------DRDLFSWTCL 225 (689)
Q Consensus 156 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----------~~d~~~~~~l 225 (689)
++..|+ .+..+.-.|.++.|..++.....-... ...+-++.+..+++.|+ ..-...|..-
T Consensus 148 ~p~FW~-~v~~lvlrG~~~~a~~lL~~~s~~~~~---------~~~~~~~~~~~LL~~~P~~~~~~~~s~~~f~~~~~~W 217 (566)
T PF07575_consen 148 DPDFWD-YVQRLVLRGLFDQARQLLRLHSSYQSY---------SLQSAFEALIQLLSSMPRYRPNSGQSESEFSSQWREW 217 (566)
T ss_dssp SHHHHH-HHHHHHHTT-HHHHHHHH-TTTTTTTH---------HHHHHHHHHHHHHTT------------SS-HHHHHHH
T ss_pred chhHHH-HHHHHHHcCCHHHHHHHHHhcccccch---------hHHHHHHHHHHHHHhCCCccccchhhhHHHHHHHHHH
Q ss_pred HHHHHh---------CCChHHHHHHHhhcCcCCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCC---hHHHHHHHHHHHH
Q 036237 226 VDGFSK---------CGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRD---LITWNSMIAGYEL 293 (689)
Q Consensus 226 i~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~ 293 (689)
=..+.+ .....+-++.+-.+...+..+... .+..+-++.-.+---..|+ ......++..+..
T Consensus 218 ~~~~~~l~~~~~~~~~~~~~~~L~~l~~Il~G~~~~i~~------~~~~WyE~~~a~~ly~~P~~~~~e~l~~~a~~~~~ 291 (566)
T PF07575_consen 218 KSECRRLRSSSLQDGPFEIRENLEDLLKILLGDEDTILE------YSQDWYEALVALLLYVDPTCKPFELLHEYAQSCLE 291 (566)
T ss_dssp HHHHHHHHHHS---S-HHHHHHHHHHHHHHHT-HHHHHH------T-SSHHHHHHHHHHHT------TTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCchhhHHHHHHHHHHHCCCHHHHHH------HhCcHHHHHHHhheeeCCCcchhhhHHHHHHHHHh
Q ss_pred cCChHHHHHHHHHhccCCCCcChhhHHHHHHHHHcccchhhHHHHHHHHHHhCCccchhHHhHHHhhHHhcCCHH-HHHH
Q 036237 294 NGRFMEALELLETMLIGDVLPNDATLVSALSAVAGLAVLNKGRWMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIE-SALT 372 (689)
Q Consensus 294 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~-~A~~ 372 (689)
.. ++|...-...+-...-.|++..+.+..... ..|..+...+.+.+..+|-++ .-..
T Consensus 292 ~~-----------------~~~~~~~~e~~~~~i~~~d~~~vL~~~~~~-----~~~~w~aahladLl~~~g~L~~~~~~ 349 (566)
T PF07575_consen 292 EF-----------------PPDSTNPLEQILLAIFEGDIESVLKEISSL-----FDDWWFAAHLADLLEHKGLLEDSEQE 349 (566)
T ss_dssp HS--------------------TTSTTHHHHHHHHTS--GGGHHHHHHH-------HHHHHHHHHHHHHHTTSS--SS--
T ss_pred cC-----------------CCCCCCHHHHHHHHHHccCHHHHHHHHHHH-----ccchhHHHHHHHHHHhcCcccccccc
Q ss_pred HH--HhcCC-----------CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 036237 373 VF--RAISK-----------KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRY 439 (689)
Q Consensus 373 ~~--~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 439 (689)
-+ ..+.+ .+...|..-+.-+...++.. ....+.+...-.-.+...-.-++..|.+.|..+.|.++
T Consensus 350 ~~~~~~lre~~ll~YA~~L~s~~~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I 427 (566)
T PF07575_consen 350 DFGGSSLREYLLLEYASSLMSHHSLWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREI 427 (566)
T ss_dssp ---TS-HHHHHHHHHHHHHHT-TTTHHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHhcCcchHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHH
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHhh--cCC
Q 036237 440 FNMMINDYGIEPTIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFV-IWMSLLSGARNHGNKDIGEYAANNLIK--VAP 516 (689)
Q Consensus 440 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p 516 (689)
.+.+-.+ +.+.|++-+|+..+-+.+...-.. +-..++..|...|. .....+.+.+.. .-.
T Consensus 428 ~~~~~~~----------------~~~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~~~~~~~-~~~~~ll~~i~~~~~~~ 490 (566)
T PF07575_consen 428 CKILGQR----------------LLKEGRYGEALSWFIRAGDYSLVTRIADRLLEEYCNNGE-PLDDDLLDNIGSPMLLS 490 (566)
T ss_dssp HHHHHHH----------------HHHHHHHHHHHHHHH------------------------------------------
T ss_pred HHHHHHH----------------HHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHhcCCC-cccHHHHHHhcchhhhh
Q ss_pred CCchhHHHHHHHH--HhcCCcchHHHHHHHHHhCCCccCCcccEEEECCEEEEEeeCCCCCcChHHHHHHHHHHHHH
Q 036237 517 DTIGCYVVLSNIY--AAAGQWDKVSEVREMMKKRGFRKDPGSSSIEHRGVLHEFVVGDKSHPQTDEIHSKLSEMRNK 591 (689)
Q Consensus 517 ~~~~~~~~L~~~~--~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~ 591 (689)
+....|..+-..| .+.|++.+|.+.+-.+.+.++.|.. .|..+-...-.+...+...=..++.+..+.-+.+.
T Consensus 491 ~~L~fla~yreF~~~~~~~~~~~Aa~~Lv~Ll~~~~~Pk~--f~~~LL~d~lplL~~~~~~f~~~~~~~ll~~Le~~ 565 (566)
T PF07575_consen 491 QRLSFLAKYREFYELYDEGDFREAASLLVSLLKSPIAPKS--FWPLLLCDALPLLESDEVIFSSSDTYELLRCLEEL 565 (566)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred hhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHCCCCCcHH--HHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHh
No 434
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=33.97 E-value=14 Score=26.93 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=17.2
Q ss_pred ceEEEecCCccccccCccCCCC
Q 036237 665 REIIVRDNSRFHHFKNGSCSCK 686 (689)
Q Consensus 665 ~~~~~~~~~~~h~~~~g~csc~ 686 (689)
..|-+.|.+..|+||||+-+-+
T Consensus 8 ksi~LkDGstvyiFKDGKMamE 29 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMAME 29 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EEEE
T ss_pred eeEecCCCCEEEEEcCCceehh
Confidence 4677889999999999986543
No 435
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=33.74 E-value=97 Score=21.03 Aligned_cols=31 Identities=10% Similarity=-0.094 Sum_probs=14.1
Q ss_pred hCCCchHHHHHHHHhHhCCCCCCcccHHHHH
Q 036237 99 FNQRSHEALTLFCDLLDRFLLPDNFTLPCVI 129 (689)
Q Consensus 99 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll 129 (689)
+.|-..++..++++|.+.|+..+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3444444444555554444444444444333
No 436
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=33.37 E-value=1.7e+02 Score=30.72 Aligned_cols=39 Identities=21% Similarity=0.222 Sum_probs=27.6
Q ss_pred CCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 036237 480 PMRPNF--VIWMSLLSGARNHGNKDIGEYAANNLIKVAPDT 518 (689)
Q Consensus 480 ~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 518 (689)
+++|.. .++.+-++.+.+++|+..|-.+.++++++.|..
T Consensus 293 ~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 293 KLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp ---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred CCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 445533 356677777889999999999999999999854
No 437
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=33.31 E-value=4.7e+02 Score=25.54 Aligned_cols=82 Identities=17% Similarity=0.130 Sum_probs=42.8
Q ss_pred cchhHHhHHHhhHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 036237 349 VDGVLGTLLIQMYSKCGSIESALTVFRAISKKKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACS 428 (689)
Q Consensus 349 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 428 (689)
.|+.....+...|.+.|++.+|+..|-.-..++...+-.++.-....|...++ |...-.++ --|.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaV-L~yL 152 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAV-LQYL 152 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHH-HHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHH-HHHH
Confidence 36788888999999999999999887544333333222222222222222222 11111122 2344
Q ss_pred ccCcHHHHHHHHHHhHH
Q 036237 429 HAGLVNDGRRYFNMMIN 445 (689)
Q Consensus 429 ~~g~~~~a~~~~~~~~~ 445 (689)
-.+++..|...++...+
T Consensus 153 ~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTS 169 (260)
T ss_dssp HTTBHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 56778888877766654
No 438
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.60 E-value=4.7e+02 Score=28.20 Aligned_cols=90 Identities=12% Similarity=0.017 Sum_probs=49.9
Q ss_pred HhCCCCCchHHHHHhhcccccCCCCHHHHHHHHhcccC-CCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCccc
Q 036237 46 KTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRILQ-HPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFT 124 (689)
Q Consensus 46 ~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~f~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 124 (689)
+.|+..+......+. -.+ .|++.+|+.++++... .....++..+. ++. |. ++...
T Consensus 195 ~Egi~~e~eAL~~Ia-~~S---~Gd~RdAL~lLeq~i~~~~~~it~~~V~-----------------~~l--g~-~~~~~ 250 (484)
T PRK14956 195 IENVQYDQEGLFWIA-KKG---DGSVRDMLSFMEQAIVFTDSKLTGVKIR-----------------KMI--GY-HGIEF 250 (484)
T ss_pred HcCCCCCHHHHHHHH-HHc---CChHHHHHHHHHHHHHhCCCCcCHHHHH-----------------HHh--CC-CCHHH
Confidence 446655555554433 222 5888888888877531 11112222221 111 32 24445
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchhH
Q 036237 125 LPCVIKGAARLGAIKEGKQIHGLVFKLGFGFDKFV 159 (689)
Q Consensus 125 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 159 (689)
+..++.++...+....+..+++.+++.|..|..++
T Consensus 251 ~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~~ 285 (484)
T PRK14956 251 LTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKFL 285 (484)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHHH
Confidence 55566665555555678888888888887666543
No 439
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=32.15 E-value=1e+02 Score=22.30 Aligned_cols=30 Identities=10% Similarity=0.273 Sum_probs=17.6
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 036237 416 TAITFIGVLNACSHAGLVNDGRRYFNMMIN 445 (689)
Q Consensus 416 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 445 (689)
|..--..++.++...|++++|.++.+.+..
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333444566666777777777776666653
No 440
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=32.07 E-value=82 Score=23.54 Aligned_cols=29 Identities=7% Similarity=0.221 Sum_probs=13.5
Q ss_pred hHHHHHHHhhCCC---CCeehHHHHHHHHHhC
Q 036237 173 IDLGRRVFDAMDD---KDLVSWNCLIDGYVKK 201 (689)
Q Consensus 173 ~~~A~~~~~~m~~---~~~~~~~~li~~~~~~ 201 (689)
.+.|..++..+.. +++..||++...+.+.
T Consensus 13 tEmA~~mL~DLr~dekRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 13 TEMAQQMLADLRDDEKRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHhcchhhcChHHHHHHHHHHHHc
Confidence 3444444444432 3444555555544443
No 441
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=31.41 E-value=48 Score=28.29 Aligned_cols=33 Identities=27% Similarity=0.392 Sum_probs=24.5
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036237 393 GMHGMATQALDLFNKMCRMGMKPTAITFIGVLNAC 427 (689)
Q Consensus 393 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 427 (689)
-..|.-.+|..+|++|.+.|-.||. |+.|+.++
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3446667889999999999988875 55666544
No 442
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=31.26 E-value=4.6e+02 Score=24.83 Aligned_cols=57 Identities=19% Similarity=0.072 Sum_probs=35.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 036237 386 TAMIVGLGMHGMATQALDLFNKMCRMGMKPT-AITFIGVLNACSHAGLVNDGRRYFNMMI 444 (689)
Q Consensus 386 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 444 (689)
+.-++.+.+.+...+|+.+.++-.+. +|. .-+-..++..++-.|++++|..-++...
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 44455666677777777777666653 343 3345556667777777777776665544
No 443
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=30.88 E-value=3.3e+02 Score=22.98 Aligned_cols=61 Identities=11% Similarity=0.034 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhh-------cCCCCch----hHHHHHHHHHhcCCcchHHHHHHHH
Q 036237 485 FVIWMSLLSGARNHGNKDIGEYAANNLIK-------VAPDTIG----CYVVLSNIYAAAGQWDKVSEVREMM 545 (689)
Q Consensus 485 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-------~~p~~~~----~~~~L~~~~~~~g~~~~A~~~~~~m 545 (689)
...+..|-.++...|++++++...++++. ++.+.-. +...-+.++...|+.++|...|+..
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 33444455555566666655555554432 4443322 2334455667788888888877653
No 444
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=30.71 E-value=5.2e+02 Score=25.24 Aligned_cols=81 Identities=17% Similarity=0.217 Sum_probs=47.6
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHH-HHHHHHH
Q 036237 452 TIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYV-VLSNIYA 530 (689)
Q Consensus 452 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~-~L~~~~~ 530 (689)
++.....+...|.+.|++.+|+.-|-.-. .|+...+..++.-....| .|.+...|. ...--|.
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-~~~~~~~~~ll~~~~~~~---------------~~~e~dlfi~RaVL~yL 152 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGT-DPSAFAYVMLLEEWSTKG---------------YPSEADLFIARAVLQYL 152 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS--HHHHHHHHHHHHHHHHHT---------------SS--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcC-ChhHHHHHHHHHHHHHhc---------------CCcchhHHHHHHHHHHH
Confidence 46777888999999999999988876543 122222222333222233 333333333 3334467
Q ss_pred hcCCcchHHHHHHHHHhC
Q 036237 531 AAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 531 ~~g~~~~A~~~~~~m~~~ 548 (689)
-.|+...|...++...++
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 788899999988887654
No 445
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=30.19 E-value=2.6e+02 Score=29.96 Aligned_cols=90 Identities=11% Similarity=0.099 Sum_probs=62.2
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC--------CCchhHH
Q 036237 452 TIEHYGCLVDILCRTGYLEEAKSTIESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAP--------DTIGCYV 523 (689)
Q Consensus 452 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p--------~~~~~~~ 523 (689)
++..|-..+.-|...+++++|.++.+-.. +...|.+|......+.+...++.+|..+.+++. +-+.--.
T Consensus 572 sV~py~~iL~e~~sssKWeqavRLCrfv~---eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~ltske~ 648 (737)
T KOG1524|consen 572 SVNPYPEILHEYLSSSKWEQAVRLCRFVQ---EQTMWATLAAVAVRKHQMQISEIAYAAALQIDKVSYINHIKALTSKEE 648 (737)
T ss_pred eccccHHHHHHHhccchHHHHHHHHHhcc---chHHHHHHHHHHHhhccccHHHHHHHHhhchhhHHHHHHHhccCcHHH
Confidence 34557777788889999999999988764 667888888888888888877777776655332 0112223
Q ss_pred HHHHHHHhcCCcchHHHHHHH
Q 036237 524 VLSNIYAAAGQWDKVSEVREM 544 (689)
Q Consensus 524 ~L~~~~~~~g~~~~A~~~~~~ 544 (689)
.++....-.|+..+|..++.+
T Consensus 649 ~mA~~~l~~G~~~eAe~iLl~ 669 (737)
T KOG1524|consen 649 QMAENSLMLGRMLEAETILLH 669 (737)
T ss_pred HHHHHHHHhccchhhhHHHHh
Confidence 445555567888888777653
No 446
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=30.00 E-value=87 Score=30.86 Aligned_cols=53 Identities=13% Similarity=0.151 Sum_probs=32.9
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC
Q 036237 428 SHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIESM-PMRP 483 (689)
Q Consensus 428 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p 483 (689)
.+.|+.++|..+|+... .+.|+ +....-+........++-+|-.++-+. .+.|
T Consensus 127 ~~~Gk~ekA~~lfeHAl---alaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP 181 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHAL---ALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISP 181 (472)
T ss_pred HhccchHHHHHHHHHHH---hcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCC
Confidence 46788999999998887 45666 444444444444445556666655443 3444
No 447
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=30.00 E-value=2.6e+02 Score=25.54 Aligned_cols=32 Identities=13% Similarity=0.158 Sum_probs=19.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 036237 459 LVDILCRTGYLEEAKSTIESMPMRPNFVIWMS 490 (689)
Q Consensus 459 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 490 (689)
.+-.|.+.|.+++|.+++++.-..|+......
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~ 148 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFSDPESQKLRM 148 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhcCCCchhHHH
Confidence 34456677777777777777633454444333
No 448
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=29.81 E-value=3.5e+02 Score=22.94 Aligned_cols=42 Identities=7% Similarity=0.185 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHH
Q 036237 400 QALDLFNKMCRMGMKPTA-ITFIGVLNACSHAGLVNDGRRYFN 441 (689)
Q Consensus 400 ~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~ 441 (689)
++.++|..|...|+--.. .-|..-...+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555555555443332 234444444445555555555544
No 449
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=29.78 E-value=2.6e+02 Score=23.73 Aligned_cols=41 Identities=7% Similarity=0.015 Sum_probs=32.1
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 036237 476 IESMPMRPNFVIWMSLLSGARNHGNKDIGEYAANNLIKVAP 516 (689)
Q Consensus 476 ~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 516 (689)
+-.+.+-|++.+..+-+.+|++-+|+..|.++++-+...-+
T Consensus 75 l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g 115 (149)
T KOG4077|consen 75 LFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCG 115 (149)
T ss_pred hhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcc
Confidence 33445668888888899999999999999999888765444
No 450
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=29.72 E-value=2.1e+02 Score=31.19 Aligned_cols=132 Identities=14% Similarity=0.026 Sum_probs=87.0
Q ss_pred CCCHHHHHHHHHHHhcc--CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh-cCCHHHHHHHHHhC-CCCC--CHHH
Q 036237 414 KPTAITFIGVLNACSHA--GLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCR-TGYLEEAKSTIESM-PMRP--NFVI 487 (689)
Q Consensus 414 ~p~~~t~~~ll~a~~~~--g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~-~~~p--~~~~ 487 (689)
-|+..|...++.-...- ..-+-|-.++-.|.+ .+.|--...| +..+|-| .|+...|...+..+ ..+| ..+.
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 45666665555443322 123344455555542 3334333222 2344443 58888888887765 3334 2334
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 036237 488 WMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKR 548 (689)
Q Consensus 488 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~ 548 (689)
...|.....+.|-.-.|-.++.+.+.+.-..|-++..++++|....+.+.|.+.|+...+.
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 5567777777888888999999998887777889999999999999999999999887653
No 451
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=29.43 E-value=1.8e+02 Score=19.66 Aligned_cols=32 Identities=13% Similarity=0.317 Sum_probs=18.7
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036237 393 GMHGMATQALDLFNKMCRMGMKPTAITFIGVL 424 (689)
Q Consensus 393 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 424 (689)
.+.|-..++..++++|.+.|+.-+...|..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34555556666666666666655555555444
No 452
>PRK09169 hypothetical protein; Validated
Probab=29.36 E-value=1.4e+03 Score=29.96 Aligned_cols=457 Identities=12% Similarity=0.042 Sum_probs=247.1
Q ss_pred chHHHHHhhcccccCCCCHHH--------HHHHHhcccCCCChhhHHHHHHHHHhCCCchHHHHHHHHh---HhCC----
Q 036237 53 SGISSRLLSLYVDPHINNLHY--------ARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDL---LDRF---- 117 (689)
Q Consensus 53 ~~~~~~ll~~~~~~~~g~~~~--------A~~~f~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m---~~~g---- 117 (689)
...+..|.+.++| .-+... |.++++.....-+...+..+++++++=.+...+...-+.+ +...
T Consensus 122 ~~~~a~l~n~lsK--~~d~~aC~~a~a~ia~q~~~~~~~~l~~~~v~~lLNalSKWP~~~~c~~aa~~lA~~la~~~~l~ 199 (2316)
T PRK09169 122 LAQLAHLGNKLSK--YPDRPACMAAIAWIAGQLLDALREALDAISFALLLNALSKWPDNTDCQTAAEQLADRLASDSRLL 199 (2316)
T ss_pred HHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccCCCchHHHHHHHHHHHHhccCHHHH
Confidence 4455556666666 333222 2233332221345666777888888765554443333322 1110
Q ss_pred CCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHh----C---CCCchhHHHHHHHHHHhcCChHHHHHHHhhC----CC-
Q 036237 118 LLPDNFTLPCVIKGAARLGAIKEGKQIHGLVFKL----G---FGFDKFVLSSLVSMYAKFGEIDLGRRVFDAM----DD- 185 (689)
Q Consensus 118 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~- 185 (689)
...|......+++++++--+-......-..+... + ...+..-...++++++|-.+-+.+...-+.+ ..
T Consensus 200 ~al~~q~va~~lnalSKwp~~~~cr~a~~~lA~rL~~~~~l~~~l~~q~va~~LNAlSKWp~~~~c~~aa~~lA~rla~~ 279 (2316)
T PRK09169 200 QAMDAQEVANALNALSKWPDSPRCRNAAERLAERLADEPGLLQSLRAQEVALLLNALSKWPDDEACRQAAEALAARLARE 279 (2316)
T ss_pred HhcchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcChHHHHhcCHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhcC
Confidence 1134556677788888776655544443333221 1 1234556677889998887765554443322 11
Q ss_pred ------CCeehHHHHHHHHHhCCChHHHHHHHhh----CCC-------CCcchHHHHHHHHHhCCChHHHH----HHHhh
Q 036237 186 ------KDLVSWNCLIDGYVKKGEVEVAMKLFDE----MPD-------RDLFSWTCLVDGFSKCGKVEIAR----EIFYR 244 (689)
Q Consensus 186 ------~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~-------~d~~~~~~li~~~~~~g~~~~A~----~~~~~ 244 (689)
-|.......+.++++-..-+.+...... +.. -+..-....++++++-.+.+.+. .+-..
T Consensus 280 ~~lr~~~~~Q~vAN~LNALSKwp~~~~cr~aa~~LA~rL~~~~~l~~~~~aQ~vAN~LNALSKWp~~~~c~~Aa~~LA~r 359 (2316)
T PRK09169 280 PGLRLALDPQGVANALNALSKWPDTEACRQAAEALAERLAQERGLLQAMNAQAVANALNALSKWPDEEACRAAAEALAAR 359 (2316)
T ss_pred hhhhhhcCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 1344456667777777654433322222 211 25556777888888877765432 22222
Q ss_pred cC-------cCCcchHHHHHHHHHhcCCHHH----HHHHHHhcCC-------CChHHHHHHHHHHHHcCChHHHH---HH
Q 036237 245 MP-------NRNLVSWNAMINGYMKAGDVDS----ACELFDDMEI-------RDLITWNSMIAGYELNGRFMEAL---EL 303 (689)
Q Consensus 245 ~~-------~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~---~~ 303 (689)
+. .-++.-....+++++|.++-+. |..+...+.. -|..-....+.++++.+.-+.+. ..
T Consensus 360 L~~~~~l~~~~npQelANaLnALSKwp~~~~cr~AA~aLA~rL~~~~~l~~~fnaQ~vANaLnALsKWp~~~~c~~aa~a 439 (2316)
T PRK09169 360 LARDAGLRRALNAQELANALNALSKWPDEEACRAAAEALAARLARDAGLRAALNAQGVANALNALSKWPGAEACRQAALA 439 (2316)
T ss_pred HHhChhhhhhCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHhchhhhhhcChHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 22 1345666778888998876543 3333333321 14455566777888776644322 22
Q ss_pred H-HHhccC---CCCcChhhHHHHHHHHHcccchhhH----HHHHHHHHHh---CCccchhHHhHHHhhHHhcCCHHHHHH
Q 036237 304 L-ETMLIG---DVLPNDATLVSALSAVAGLAVLNKG----RWMHSYIVKN---GFVVDGVLGTLLIQMYSKCGSIESALT 372 (689)
Q Consensus 304 ~-~~m~~~---g~~p~~~t~~~ll~a~~~~~~~~~a----~~i~~~~~~~---g~~~~~~~~~~li~~~~~~g~~~~A~~ 372 (689)
+ ...... .-..+..-++..+.++++-.+.+.. ..+...+... .-..+..-....+.+++|.+..+.+..
T Consensus 440 LA~rl~~~a~lr~~fn~QeLaN~LnALsKWp~~~~c~~aa~~LA~rl~~~~~l~~af~~Q~lAN~LnALsKwp~~~~c~~ 519 (2316)
T PRK09169 440 LAARLAADARLRNALSAQELANALNALSKWPDEAACRRAAEALAARLAGDAELRQALDAQGLANALNALSKWPDSDACRA 519 (2316)
T ss_pred HHHHHhhchhhhhhCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcChhhhhhcChHHHHHHHHHHhcCCccHHHHH
Confidence 2 222111 0234566778888998887664422 2223222211 112345556678888899888766433
Q ss_pred ----HHHhcCC-------CChhhHHHHHHHHHHcCCHH----HHHHHHHHHHHCC---CCCCHHHHHHHHHHHhccCcHH
Q 036237 373 ----VFRAISK-------KKVGHWTAMIVGLGMHGMAT----QALDLFNKMCRMG---MKPTAITFIGVLNACSHAGLVN 434 (689)
Q Consensus 373 ----~~~~~~~-------~~~~~~~~li~~~~~~g~~~----~A~~l~~~m~~~g---~~p~~~t~~~ll~a~~~~g~~~ 434 (689)
+..++.. -+.--+...+.++++-++.+ .|..+...+.... -..|..-....++++++-+...
T Consensus 520 aA~aLA~rla~~~~l~~afnpQ~lAN~LnALSKWP~~~~cr~AA~aLA~~la~~~~l~~~~naQ~LAN~LnALSKWP~~~ 599 (2316)
T PRK09169 520 AAEALADRLAQDPALLQAMDAQGLANTLNALSKWPEEPDCRAAAEALAARLARRPDLRSALNAQGLANLLNALSKWPDED 599 (2316)
T ss_pred HHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhcChhhhhccCHHHHHHHHHHHhhCCCch
Confidence 2222222 24556677788888876632 2334444443321 1335567778899999987654
Q ss_pred H----HHHHHHHhHHhcCC--CCChhHHHHHHHHHHhcCCHHHHHHHHHhC----C------CCCCHHHHHHHHHHHHhc
Q 036237 435 D----GRRYFNMMINDYGI--EPTIEHYGCLVDILCRTGYLEEAKSTIESM----P------MRPNFVIWMSLLSGARNH 498 (689)
Q Consensus 435 ~----a~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~------~~p~~~~~~~ll~~~~~~ 498 (689)
. +..+...+..+.+. .-+.......+.++++....+........+ . ..-+..-+.++++++.+-
T Consensus 600 acr~Aa~aLA~rla~~~~~~~afn~Q~lAN~LnALSKWP~~~~cr~Aa~aLA~~L~~~~~l~~af~aQ~LaN~LnALSKW 679 (2316)
T PRK09169 600 ACRAAAEALAGRLARDAGLLDAFNAQDLANLLNGLSKWPDEDDCRQAAEALAARLLRDAGLPRAFDAQGLANALNALSKW 679 (2316)
T ss_pred hHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcchhHHhcCcHHHHHHHHHHHhC
Confidence 3 33344444433222 234566778888999988766544333322 1 123566677888999998
Q ss_pred CChHHHHHHHHHH
Q 036237 499 GNKDIGEYAANNL 511 (689)
Q Consensus 499 g~~~~a~~~~~~~ 511 (689)
.+.+.+......+
T Consensus 680 p~~~~c~~Aa~aL 692 (2316)
T PRK09169 680 PDEAACRAAALAL 692 (2316)
T ss_pred CCcHHHHHHHHHH
Confidence 8877655554444
No 453
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=29.32 E-value=75 Score=31.42 Aligned_cols=38 Identities=21% Similarity=0.186 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhccCCCCcChhhHH
Q 036237 283 TWNSMIAGYELNGRFMEALELLETMLIGDVLPNDATLV 320 (689)
Q Consensus 283 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 320 (689)
-||.-|..-.+.|+.++|+.++++..+.|+.--..||.
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 46788888889999999999999988888655444443
No 454
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=29.10 E-value=5.2e+02 Score=24.71 Aligned_cols=24 Identities=21% Similarity=0.152 Sum_probs=18.9
Q ss_pred HHcCCHHHHHHHHHHHHHCCC-CCC
Q 036237 393 GMHGMATQALDLFNKMCRMGM-KPT 416 (689)
Q Consensus 393 ~~~g~~~~A~~l~~~m~~~g~-~p~ 416 (689)
...|+++.|+++.+..++.|. .|+
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd 118 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGLTMPD 118 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCCCCCc
Confidence 457899999999999998884 354
No 455
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.08 E-value=1e+03 Score=28.02 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhcc
Q 036237 283 TWNSMIAGYELNGRFMEALELLETMLI 309 (689)
Q Consensus 283 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 309 (689)
-|..|+..|...|+.++|++++.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 377888888889999999999888865
No 456
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=28.84 E-value=5.7e+02 Score=25.14 Aligned_cols=115 Identities=10% Similarity=-0.122 Sum_probs=57.6
Q ss_pred cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC-------CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCC
Q 036237 432 LVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTG-------YLEEAKSTIESMPMRPNFVIWMSLLSGARN----HGN 500 (689)
Q Consensus 432 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-------~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~ 500 (689)
+..+|..+|+.+.+ .|..+.......+...|...+ +...|...+.++-..-+......|...|.. ..|
T Consensus 128 d~~~A~~~~~~Aa~-~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d 206 (292)
T COG0790 128 DLVKALKYYEKAAK-LGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRD 206 (292)
T ss_pred CHHHHHHHHHHHHH-cCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcC
Confidence 55666666666653 243332222333333333321 123566666665322233333333333322 237
Q ss_pred hHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcC---------------CcchHHHHHHHHHhCCC
Q 036237 501 KDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAG---------------QWDKVSEVREMMKKRGF 550 (689)
Q Consensus 501 ~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g---------------~~~~A~~~~~~m~~~~~ 550 (689)
.+.|...|.++-+... ......+. .+...| +...|...+......+.
T Consensus 207 ~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 207 LKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred HHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 7888888888877665 44555565 444444 45555555555554443
No 457
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=28.57 E-value=2.9e+02 Score=21.64 Aligned_cols=42 Identities=14% Similarity=0.082 Sum_probs=29.5
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC
Q 036237 143 QIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMD 184 (689)
Q Consensus 143 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 184 (689)
++|+.....|+..|+.++..+++...-+=..+...+++..|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 677777777777777777777777665556666666666654
No 458
>PF15469 Sec5: Exocyst complex component Sec5
Probab=28.27 E-value=4.6e+02 Score=23.83 Aligned_cols=54 Identities=9% Similarity=0.124 Sum_probs=28.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 036237 386 TAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMIN 445 (689)
Q Consensus 386 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 445 (689)
..++..-.+......++.++++..- ....-.-|.-|...|+++.+...|.++..
T Consensus 61 ~pll~~~~k~~~l~~~l~~l~r~~f------lF~LP~~L~~~i~~~dy~~~i~dY~kak~ 114 (182)
T PF15469_consen 61 KPLLERREKADKLRNALEFLQRNRF------LFNLPSNLRECIKKGDYDQAINDYKKAKS 114 (182)
T ss_pred HHHHccHHHHHHHHHHHHHHHHHHH------HHHhHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 3333333334444455555554432 12223445566777788777777776664
No 459
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=28.20 E-value=2.5e+02 Score=22.00 Aligned_cols=60 Identities=17% Similarity=0.083 Sum_probs=36.0
Q ss_pred HHhhcCcCCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHH
Q 036237 241 IFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEA 300 (689)
Q Consensus 241 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 300 (689)
+++.+.+.++.+..-.-..-.+..+.++|..+++.++.++..+|..+.+++-..|...-|
T Consensus 19 ild~L~~~gvlt~~~~e~I~~~~t~~~qa~~Lld~L~trG~~Af~~F~~aL~~~~~~~La 78 (86)
T cd08323 19 IMDHMISDGVLTLDEEEKVKSKATQKEKAVMLINMILTKDNHAYVSFYNALLHEGYKDLA 78 (86)
T ss_pred HHHHHHhcCCCCHHHHHHHHcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCChHHH
Confidence 444444444444444444445556677777777777777777777777776655544333
No 460
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=28.20 E-value=3e+02 Score=30.50 Aligned_cols=47 Identities=9% Similarity=-0.017 Sum_probs=29.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhccCcH
Q 036237 387 AMIVGLGMHGMATQALDLFNKMCRMG--MKPTAITFIGVLNACSHAGLV 433 (689)
Q Consensus 387 ~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~t~~~ll~a~~~~g~~ 433 (689)
+|..+|..+|++..+.++++.+...+ -+.=...|+..++...+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 67777777777777777777776532 111123566666666666654
No 461
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=27.85 E-value=5e+02 Score=24.15 Aligned_cols=30 Identities=17% Similarity=0.115 Sum_probs=25.7
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036237 382 VGHWTAMIVGLGMHGMATQALDLFNKMCRM 411 (689)
Q Consensus 382 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 411 (689)
+...+.++..+...|+++.|-+.|.-+.+.
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 456778888899999999999999999875
No 462
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=27.82 E-value=69 Score=24.46 Aligned_cols=27 Identities=33% Similarity=0.351 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHHHCCCCCCCccc
Q 036237 578 TDEIHSKLSEMRNKLKAAGHVPDTTQV 604 (689)
Q Consensus 578 ~~~~~~~l~~l~~~m~~~g~~pd~~~~ 604 (689)
..++.+.+++..++++..|+.||-..+
T Consensus 7 li~il~~ie~~inELk~dG~ePDivL~ 33 (85)
T PF08967_consen 7 LIRILELIEEKINELKEDGFEPDIVLV 33 (85)
T ss_dssp HHHHHHHHHHHHHHHHHTT----EEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 356777888899999999999998764
No 463
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.70 E-value=7.9e+02 Score=26.38 Aligned_cols=173 Identities=13% Similarity=0.014 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCC----------hhhHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCC--------HHHHHHHHHHHh
Q 036237 368 ESALTVFRAISKKK----------VGHWTAMIVGLGMHGMATQALDLFNKMCR-MGMKPT--------AITFIGVLNACS 428 (689)
Q Consensus 368 ~~A~~~~~~~~~~~----------~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~--------~~t~~~ll~a~~ 428 (689)
|+|+...++.++.| +.....++.+-.-.|++.+|++-...|.+ ..-.|. ...-..+.--|.
T Consensus 299 De~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~ 378 (629)
T KOG2300|consen 299 DEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSH 378 (629)
T ss_pred HHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhh
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-----------HHHHHHHHHHH
Q 036237 429 HAGLVNDGRRYFNMMINDYGIEPT--IEHYGCLVDILCRTGYLEEAKSTIESMPMRPN-----------FVIWMSLLSGA 495 (689)
Q Consensus 429 ~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~-----------~~~~~~ll~~~ 495 (689)
..+.++.|..-|....+. --.-| ...-..+.-.|.+.|+.++-.++++.++ |. ...+..-.--.
T Consensus 379 sv~~~enAe~hf~~a~k~-t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~--p~nt~s~ssq~l~a~~~~v~glfa 455 (629)
T KOG2300|consen 379 SVNCYENAEFHFIEATKL-TESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIG--PLNTNSLSSQRLEASILYVYGLFA 455 (629)
T ss_pred hcchHHHHHHHHHHHHHh-hhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcC--CCCCCcchHHHHHHHHHHHHHHHH
Q ss_pred HhcCChHHHHHHHHHHhh------cCCCCchhHHHHHHHHHhcCCcchHHHHHH
Q 036237 496 RNHGNKDIGEYAANNLIK------VAPDTIGCYVVLSNIYAAAGQWDKVSEVRE 543 (689)
Q Consensus 496 ~~~g~~~~a~~~~~~~~~------~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~ 543 (689)
...+++.+|...+.+.++ ++.-..-..+.|+.++...|+..++.+...
T Consensus 456 f~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvr 509 (629)
T KOG2300|consen 456 FKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVR 509 (629)
T ss_pred HHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccc
No 464
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=27.56 E-value=86 Score=29.62 Aligned_cols=55 Identities=16% Similarity=0.259 Sum_probs=49.6
Q ss_pred HHhcCChHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 036237 495 ARNHGNKDIGEYAANNLIKVAPDTIGCYVVLSNIYAAAGQWDKVSEVREMMKKRG 549 (689)
Q Consensus 495 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~~~ 549 (689)
..+.+|.+.+.+++.+++++-|+....+..++..-.++|+.+.|.+.+++..+..
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 3567899999999999999999999999999999999999999999999887643
No 465
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=26.64 E-value=4.6e+02 Score=28.50 Aligned_cols=60 Identities=15% Similarity=0.137 Sum_probs=36.1
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhcCCC--ChH---HHHHHHHHHHHcCChHHHHHHHHHhcc
Q 036237 250 LVSWNAMINGYMKAGDVDSACELFDDMEIR--DLI---TWNSMIAGYELNGRFMEALELLETMLI 309 (689)
Q Consensus 250 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~ 309 (689)
......|+.-|.+.+++++|..++..|.=. ... +.+.+.+.+.+..-..+....++.++.
T Consensus 408 ~l~~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 408 DLGLVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred cccHHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 334456888899999999999999988722 222 333444444444434444445555443
No 466
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=26.32 E-value=1.7e+02 Score=23.19 Aligned_cols=32 Identities=0% Similarity=0.133 Sum_probs=17.6
Q ss_pred CChHHHHHHHhhCCCCCeehHHHHHHHHHhCC
Q 036237 171 GEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKG 202 (689)
Q Consensus 171 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g 202 (689)
.+.+.+.++++.++.+.+.+|..+..++-..|
T Consensus 48 t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~ 79 (90)
T cd08332 48 TSFSQNVALLNLLPKRGPRAFSAFCEALRETS 79 (90)
T ss_pred CcHHHHHHHHHHHHHhChhHHHHHHHHHHhcC
Confidence 44555555555555555555555555554433
No 467
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=26.28 E-value=1.2e+02 Score=23.28 Aligned_cols=43 Identities=16% Similarity=0.268 Sum_probs=29.1
Q ss_pred hcCChHHHHHHHHHHhhc-----CCCCchhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 036237 497 NHGNKDIGEYAANNLIKV-----APDTIGCYVVLSNIYAAAGQWDKVSEVREMMKK 547 (689)
Q Consensus 497 ~~g~~~~a~~~~~~~~~~-----~p~~~~~~~~L~~~~~~~g~~~~A~~~~~~m~~ 547 (689)
..|+.+.|+..|++.++. .-+.+ .......|++|.++.++|.+
T Consensus 20 E~g~~e~Al~~Y~~gi~~l~eg~ai~~~--------~~~~~~~w~~ar~~~~Km~~ 67 (79)
T cd02679 20 EWGDKEQALAHYRKGLRELEEGIAVPVP--------SAGVGSQWERARRLQQKMKT 67 (79)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHcCCCCC--------cccccHHHHHHHHHHHHHHH
Confidence 347888888888877651 11111 23456689999999999975
No 468
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=25.66 E-value=6.6e+02 Score=24.82 Aligned_cols=132 Identities=16% Similarity=0.076 Sum_probs=71.8
Q ss_pred HHHHHHcCChHHHHHHHHHhccCCCCcChhhH-------HHHHHHHHcccchhhHHHHH----HHHHHhCCccchhHHhH
Q 036237 288 IAGYELNGRFMEALELLETMLIGDVLPNDATL-------VSALSAVAGLAVLNKGRWMH----SYIVKNGFVVDGVLGTL 356 (689)
Q Consensus 288 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-------~~ll~a~~~~~~~~~a~~i~----~~~~~~g~~~~~~~~~~ 356 (689)
..-..+.+++++|+..+.+.+..|+..|..+. ..+...|...|+...-.+.. ..|..-.-+..+.+..+
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiirt 89 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRT 89 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHH
Confidence 34456678899999999999998887776554 34455555656544332222 22222222334555666
Q ss_pred HHhhHHhc-CCHHHHHHHHHhcCC---C--C----hhhHHHHHHHHHHcCCHHHHHHHHH----HHHHCCCCCCHHH
Q 036237 357 LIQMYSKC-GSIESALTVFRAISK---K--K----VGHWTAMIVGLGMHGMATQALDLFN----KMCRMGMKPTAIT 419 (689)
Q Consensus 357 li~~~~~~-g~~~~A~~~~~~~~~---~--~----~~~~~~li~~~~~~g~~~~A~~l~~----~m~~~g~~p~~~t 419 (689)
|++.+... ..+++-.++.....+ + . ...-.-+|..+.+.|++.+|+.+.. ++.+..-+|+.++
T Consensus 90 Liekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 90 LIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 66665443 345555555544332 1 1 1122345666677777777766443 3444444555444
No 469
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=25.20 E-value=2.2e+02 Score=27.49 Aligned_cols=15 Identities=20% Similarity=0.069 Sum_probs=6.3
Q ss_pred HHHHHhcCChHHHHH
Q 036237 492 LSGARNHGNKDIGEY 506 (689)
Q Consensus 492 l~~~~~~g~~~~a~~ 506 (689)
..+....|+.+....
T Consensus 225 ~~Ca~~~~~~~~~l~ 239 (247)
T PF11817_consen 225 LECAKRLGDVEDYLT 239 (247)
T ss_pred HHHHHHhCCHHHHHH
Confidence 333344444444443
No 470
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=24.00 E-value=5.8e+02 Score=23.59 Aligned_cols=90 Identities=12% Similarity=0.054 Sum_probs=46.8
Q ss_pred HHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHhhcCcCCcchHHHHHHHHHhcCCHHHHHHHHHhcCCC----------
Q 036237 210 LFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIR---------- 279 (689)
Q Consensus 210 ~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------- 279 (689)
+.++-+++..+.|-....+-++.-.-+++-+.+- -.+.-+++..|-+.-++.+..++++.|.+.
T Consensus 98 Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~L------GRiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL 171 (233)
T PF14669_consen 98 LTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLL------GRIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGL 171 (233)
T ss_pred HHhcccccCCCCHHHHHHHHhcCCccchhhhhhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCc
Confidence 3333333444555555555555544444333221 123456666777777777777777766421
Q ss_pred --------ChHHHHHHHHHHHHcCChHHHHHHHH
Q 036237 280 --------DLITWNSMIAGYELNGRFMEALELLE 305 (689)
Q Consensus 280 --------~~~~~~~li~~~~~~g~~~~A~~~~~ 305 (689)
--..-|.-...+.+.|..+.|+.+++
T Consensus 172 ~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 172 TGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred cCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 11223444455566666666666555
No 471
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=23.98 E-value=1.7e+02 Score=21.16 Aligned_cols=19 Identities=16% Similarity=0.059 Sum_probs=10.5
Q ss_pred HhCCCchHHHHHHHHhHhC
Q 036237 98 VFNQRSHEALTLFCDLLDR 116 (689)
Q Consensus 98 ~~~g~~~~a~~~~~~m~~~ 116 (689)
...|++-+|-++++.+-..
T Consensus 10 ~n~g~f~EaHEvlE~~W~~ 28 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWKA 28 (62)
T ss_dssp HHTT-HHHHHHHHHHHCCC
T ss_pred HcCCCHHHhHHHHHHHHHH
Confidence 3456666666666666543
No 472
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=23.87 E-value=2.4e+02 Score=22.08 Aligned_cols=34 Identities=12% Similarity=0.196 Sum_probs=16.3
Q ss_pred hcCChHHHHHHHhhCCCCCeehHHHHHHHHHhCC
Q 036237 169 KFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKG 202 (689)
Q Consensus 169 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g 202 (689)
+....+.|..+++.++.+...+|....+++-..|
T Consensus 40 ~~t~~~qa~~Lld~L~trG~~Af~~F~~aL~~~~ 73 (86)
T cd08323 40 KATQKEKAVMLINMILTKDNHAYVSFYNALLHEG 73 (86)
T ss_pred CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 3344455555555555555555555444444433
No 473
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=23.60 E-value=3.2e+02 Score=28.64 Aligned_cols=56 Identities=11% Similarity=0.069 Sum_probs=38.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHhhcCc-----------CCcchHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036237 222 WTCLVDGFSKCGKVEIAREIFYRMPN-----------RNLVSWNAMINGYMKAGDVDSACELFDDME 277 (689)
Q Consensus 222 ~~~li~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 277 (689)
...+++..+-.|++..|+++++.+.- -.+.++--+.-+|.-.+++.+|.++|..+.
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666777777666655431 226667778888889999999999998753
No 474
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=23.52 E-value=3.5e+02 Score=24.32 Aligned_cols=46 Identities=11% Similarity=-0.048 Sum_probs=24.3
Q ss_pred HHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHHhcC
Q 036237 91 NLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCVIKGAARLG 136 (689)
Q Consensus 91 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 136 (689)
-.++..+......-.|.++++.+.+.+..++..|.-..|..+...|
T Consensus 29 ~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 29 LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 3445555445555566666666666655555555444444444444
No 475
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=23.32 E-value=7.5e+02 Score=24.67 Aligned_cols=25 Identities=12% Similarity=0.429 Sum_probs=11.8
Q ss_pred HHHHHHHHHhc-C-CCChHHHHHHHHH
Q 036237 266 VDSACELFDDM-E-IRDLITWNSMIAG 290 (689)
Q Consensus 266 ~~~A~~~~~~~-~-~~~~~~~~~li~~ 290 (689)
++.+.+++..+ . +.+...|..++..
T Consensus 56 ~~~~l~l~~~~~~~E~~~~vw~~~~~~ 82 (324)
T PF11838_consen 56 YSDFLDLLEYLLPNETDYVVWSTALSN 82 (324)
T ss_dssp HHHHHHHHGGG-GT--SHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCchHHHHHHHHH
Confidence 44555555555 2 3455555555443
No 476
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=23.30 E-value=5.5e+02 Score=25.66 Aligned_cols=84 Identities=12% Similarity=0.171 Sum_probs=59.5
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCeehHHHHHHHHHh----------CCChHHHHHHH
Q 036237 142 KQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVK----------KGEVEVAMKLF 211 (689)
Q Consensus 142 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~----------~g~~~~A~~~~ 211 (689)
.++++.+...++.|.-+.+.-+.-++.++=.+.+...+++.+.... .-+..|+..|+. .|++....+++
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~-~rfd~Ll~iCcsmlil~Re~il~~DF~~nmkLL 341 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP-QRFDFLLYICCSMLILVRERILEGDFTVNMKLL 341 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcCh-hhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 4688888888999999888888888888889999999999887422 225555555553 37777777777
Q ss_pred hhCCCCCcchHHHHH
Q 036237 212 DEMPDRDLFSWTCLV 226 (689)
Q Consensus 212 ~~m~~~d~~~~~~li 226 (689)
+.-+.-|....-.+.
T Consensus 342 Q~yp~tdi~~~l~~A 356 (370)
T KOG4567|consen 342 QNYPTTDISKMLAVA 356 (370)
T ss_pred hcCCCCCHHHHHHHH
Confidence 766555554443333
No 477
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=22.91 E-value=1.3e+03 Score=27.26 Aligned_cols=152 Identities=14% Similarity=0.062 Sum_probs=79.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHH
Q 036237 386 TAMIVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTI-EHYGCLVDILC 464 (689)
Q Consensus 386 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~ 464 (689)
|..+.-++..+..+......++..+. .|..--.+.+.++.+.+. .+....++....++.-.|-+ .-|-++...-.
T Consensus 676 n~~l~~l~~~~~~~~~~~~~~~~~~a---~~mtd~~~al~~l~~~~~-~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~~ 751 (863)
T TIGR02414 676 NACLSYLSAADDAEIRNLALEQFKSA---DNMTDRLAALSALVHFES-DFRERALAAFYQKWKDDPLVMDKWFALQATSP 751 (863)
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHhC---CCHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHCCCchhHHHHHHHHhCCC
Confidence 44455555555443333334444432 233323334445554333 23333444444333334432 33333332222
Q ss_pred hcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCC------hHHHHH-HHHHHhhcCCCCchhHHHHHHHHHhcCCcc
Q 036237 465 RTGYLEEAKSTIESMPMR-PNFVIWMSLLSGARNHGN------KDIGEY-AANNLIKVAPDTIGCYVVLSNIYAAAGQWD 536 (689)
Q Consensus 465 ~~g~~~~A~~~~~~~~~~-p~~~~~~~ll~~~~~~g~------~~~a~~-~~~~~~~~~p~~~~~~~~L~~~~~~~g~~~ 536 (689)
..+-++...++...-.+. .|+.-..+|+.+++..+. -..+.+ +.+.+++++|-||.+-..|+..+.+=.+++
T Consensus 752 ~~~~~~~v~~l~~h~~f~~~npn~~ral~~~f~~~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~w~~~~ 831 (863)
T TIGR02414 752 RPDTLERVKALLQHPAFDLKNPNRVRALIGAFANNNLVRFHDISGSGYRFLADQIIAIDRFNPQVAARLLEPLTRWRKLD 831 (863)
T ss_pred cccHHHHHHHHhcCCCCCcCCCcHHHHHHHHHHhcCcccccCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhcCC
Confidence 333344444443332222 244456889988864432 234444 456777899999999999999999999998
Q ss_pred hHHHH
Q 036237 537 KVSEV 541 (689)
Q Consensus 537 ~A~~~ 541 (689)
+.++-
T Consensus 832 ~~r~~ 836 (863)
T TIGR02414 832 PKRQE 836 (863)
T ss_pred HHHHH
Confidence 87763
No 478
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.89 E-value=4e+02 Score=30.70 Aligned_cols=132 Identities=16% Similarity=0.184 Sum_probs=84.3
Q ss_pred HHHHhcCChHHHHHHHhhCCCCCeehHHHHHHHHHhCCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHhh
Q 036237 165 SMYAKFGEIDLGRRVFDAMDDKDLVSWNCLIDGYVKKGEVEVAMKLFDEMPDRDLFSWTCLVDGFSKCGKVEIAREIFYR 244 (689)
Q Consensus 165 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~ 244 (689)
.....||+++.|++.-..+. |..+|..|.....+.|+.+-|...|++.+.-+..++ .|.-.|+.++-.++...
T Consensus 651 ~LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~knfekLsf-----LYliTgn~eKL~Km~~i 723 (1202)
T KOG0292|consen 651 ELALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKNFEKLSF-----LYLITGNLEKLSKMMKI 723 (1202)
T ss_pred eeehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhhhhheeE-----EEEEeCCHHHHHHHHHH
Confidence 34567888888888766655 445788898888888988888888887765433332 34445777776666555
Q ss_pred cCcCCcchHHHHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHhccC
Q 036237 245 MPNRNLVSWNAMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLIG 310 (689)
Q Consensus 245 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 310 (689)
+..++-.+-.-...+| .|++++-.++++.-...+..-.+ -..+|.-++|.++.++....
T Consensus 724 ae~r~D~~~~~qnalY--l~dv~ervkIl~n~g~~~laylt-----a~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 724 AEIRNDATGQFQNALY--LGDVKERVKILENGGQLPLAYLT-----AAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred HHhhhhhHHHHHHHHH--hccHHHHHHHHHhcCcccHHHHH-----HhhcCcHHHHHHHHHhhccc
Confidence 5433322222222223 57788888888776654332222 23467778888888887663
No 479
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=22.79 E-value=7.5e+02 Score=25.78 Aligned_cols=55 Identities=16% Similarity=0.013 Sum_probs=33.9
Q ss_pred HHHhCCCchHHHHHHHHhHhCCCCCCcc--cHHHHHHHHH--hcCChHHHHHHHHHHHHh
Q 036237 96 CYVFNQRSHEALTLFCDLLDRFLLPDNF--TLPCVIKGAA--RLGAIKEGKQIHGLVFKL 151 (689)
Q Consensus 96 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~--t~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 151 (689)
.+.+.+++..|.++|+.+..+ ++++.. .+..+..+|. ..-++++|.+.++...+.
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344778888888888888876 555444 2333334333 345667777777766554
No 480
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=22.65 E-value=9e+02 Score=25.31 Aligned_cols=58 Identities=12% Similarity=0.155 Sum_probs=40.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhcCC------CChHHHHHHHHHHHHcCChHHHHHHHHHhcc
Q 036237 252 SWNAMINGYMKAGDVDSACELFDDMEI------RDLITWNSMIAGYELNGRFMEALELLETMLI 309 (689)
Q Consensus 252 ~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 309 (689)
.+.-+.+-|..||+++.|.+.+.+... .-+..|-.+|..-.-.|+|.....+..+...
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 345567788888888888888887542 1234566667777777888887777776654
No 481
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=22.55 E-value=7.9e+02 Score=24.60 Aligned_cols=18 Identities=22% Similarity=0.484 Sum_probs=9.7
Q ss_pred hHHHHHHHHHhCCChHHH
Q 036237 221 SWTCLVDGFSKCGKVEIA 238 (689)
Q Consensus 221 ~~~~li~~~~~~g~~~~A 238 (689)
+|..|+.+++..|+.+..
T Consensus 323 ~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSELE 340 (412)
T ss_pred hhhHHHHHHhcCChHHHH
Confidence 455555555555555543
No 482
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=22.51 E-value=4.9e+02 Score=22.16 Aligned_cols=109 Identities=15% Similarity=0.179 Sum_probs=61.6
Q ss_pred HHHHHHHHhcccCCCChhhHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCCcccHHHH----HHHHHh-------cCChH
Q 036237 71 LHYARSIFDRILQHPSLVLYNLLIKCYVFNQRSHEALTLFCDLLDRFLLPDNFTLPCV----IKGAAR-------LGAIK 139 (689)
Q Consensus 71 ~~~A~~~f~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l----l~~~~~-------~~~~~ 139 (689)
..-|..++-+....| .....++.+....-.-.++++..++....-.|..+ .... ++.|-. .+..+
T Consensus 5 p~IA~~~l~~l~~s~---~~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~ef-l~~yI~~cI~~ce~~kd~~~q~R~VR 80 (126)
T PF10155_consen 5 PNIAIEILVKLINSP---NFKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQEF-LHMYISNCIKSCESIKDKYMQNRLVR 80 (126)
T ss_pred HHHHHHHHHHHcCCc---hHHHHHHHHHcCCCchhHHHHHHHHHcCCCCcHHH-HHHHHHHHHHHHHhhcccccccchhh
Confidence 344455554443122 25555666666666666777777776655444433 2222 233332 12233
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhC
Q 036237 140 EGKQIHGLVFKLGFGFDKFVLSSLVSMYAKFGEIDLGRRVFDAM 183 (689)
Q Consensus 140 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 183 (689)
..-.+...+++.++......+.-+=..+.+..+..+|..+|+-+
T Consensus 81 lvcvfl~sLir~~i~~~~~l~~evq~FClefs~i~Ea~~L~kll 124 (126)
T PF10155_consen 81 LVCVFLQSLIRNKIIDVEDLFIEVQAFCLEFSRIKEASALFKLL 124 (126)
T ss_pred hHHHHHHHHHHcCCCchHHHHhhHHHHHHHHccHHHHHHHHHHH
Confidence 34455666777776655666667777777777888888887654
No 483
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=22.30 E-value=56 Score=17.54 Aligned_cols=12 Identities=33% Similarity=0.545 Sum_probs=8.7
Q ss_pred cchhhHHHHhhh
Q 036237 650 NDCHSVTKLLSG 661 (689)
Q Consensus 650 ~~~~~~~~~~s~ 661 (689)
...|+++|+||.
T Consensus 10 qglhe~ikli~n 21 (23)
T PF08225_consen 10 QGLHEVIKLINN 21 (23)
T ss_pred HHHHHHHHHHhc
Confidence 357888888874
No 484
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=22.24 E-value=5.9e+02 Score=25.30 Aligned_cols=53 Identities=15% Similarity=0.191 Sum_probs=33.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHhcc
Q 036237 255 AMINGYMKAGDVDSACELFDDMEIRDLITWNSMIAGYELNGRFMEALELLETMLI 309 (689)
Q Consensus 255 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 309 (689)
.++..+.+.+++.+..+.+..+. .+..-...+..+...|++..|+++..+...
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34455555555555555555543 233444566777788888888888877654
No 485
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=22.20 E-value=3.2e+02 Score=24.60 Aligned_cols=61 Identities=11% Similarity=0.104 Sum_probs=31.8
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHH
Q 036237 408 MCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYLE 470 (689)
Q Consensus 408 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 470 (689)
+...|++++..-. .++..+......-.|.++++.+.+. +...+..|..--++.+.+.|-+.
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~-~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREA-EPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhh-CCCCCcchHHHHHHHHHHCCCEE
Confidence 3444555554432 2333333344455667777777643 44455444444556677777653
No 486
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=22.17 E-value=1.9e+02 Score=28.75 Aligned_cols=75 Identities=8% Similarity=0.084 Sum_probs=49.3
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHH-HHHHHHhcCChHHHHHHHHHHhhcCCCCchhHH
Q 036237 449 IEPTIEHYGCLVDILCRTGYLEEAKSTIESM-PMRP-NFVIWMS-LLSGARNHGNKDIGEYAANNLIKVAPDTIGCYV 523 (689)
Q Consensus 449 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 523 (689)
+.-|+..|...+.-..+.|.+.+...++.+. ...| |+..|-. --.-+..+++++.+..++.+.++++|++|..+.
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 4445555655555555566666666666654 2234 5556643 223356789999999999999999999987654
No 487
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=21.57 E-value=2.8e+02 Score=22.61 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=10.1
Q ss_pred HHHHHHHcCChHHHHHHHHHh
Q 036237 287 MIAGYELNGRFMEALELLETM 307 (689)
Q Consensus 287 li~~~~~~g~~~~A~~~~~~m 307 (689)
++..|...|+.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 344455555555555555554
No 488
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=21.02 E-value=1.2e+03 Score=27.43 Aligned_cols=141 Identities=14% Similarity=0.049 Sum_probs=63.4
Q ss_pred HhcCChHHHHHHHhhCCCCC---eehHHHHHHHHHhCCChHHHHHHHhhCCCC---CcchHHHHHHHHHhCCChHHHHHH
Q 036237 168 AKFGEIDLGRRVFDAMDDKD---LVSWNCLIDGYVKKGEVEVAMKLFDEMPDR---DLFSWTCLVDGFSKCGKVEIAREI 241 (689)
Q Consensus 168 ~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~~~ 241 (689)
+..|+.+....+++.-..+| ..-.+. +...+..|..+-+.-+++.-..+ |..-.+.+.. .+..|+.+-+.-+
T Consensus 533 a~~g~~~~l~~Ll~~G~d~n~~d~~G~Tp-Lh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~-A~~~g~~~iv~~L 610 (823)
T PLN03192 533 ASTGNAALLEELLKAKLDPDIGDSKGRTP-LHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWN-AISAKHHKIFRIL 610 (823)
T ss_pred HHcCCHHHHHHHHHCCCCCCCCCCCCCCH-HHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHH-HHHhCCHHHHHHH
Confidence 34556555555554333222 222222 23334455555444444432221 2222333322 2344555544444
Q ss_pred HhhcCcCCcchHHHHHHHHHhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCChHHHHHHHHHhccCCCCcC
Q 036237 242 FYRMPNRNLVSWNAMINGYMKAGDVDSACELFDDMEI---RDLITWNSMIAGYELNGRFMEALELLETMLIGDVLPN 315 (689)
Q Consensus 242 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 315 (689)
++.....+.......+...+..|+.+-+..+++.-.. +|..-++.|..+ +..|+.+-+.-+ ++.|..++
T Consensus 611 ~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A-~~~g~~~iv~~L----l~~GAdv~ 682 (823)
T PLN03192 611 YHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVA-MAEDHVDMVRLL----IMNGADVD 682 (823)
T ss_pred HhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH-HHCCcHHHHHHH----HHcCCCCC
Confidence 4333223333333456666777888777777765433 233334444433 455665544333 34454444
No 489
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=20.91 E-value=1.2e+02 Score=21.86 Aligned_cols=26 Identities=23% Similarity=0.519 Sum_probs=21.5
Q ss_pred CCcChHHHHHHHHHHHHHHHHCCCCC
Q 036237 574 SHPQTDEIHSKLSEMRNKLKAAGHVP 599 (689)
Q Consensus 574 ~~~~~~~~~~~l~~l~~~m~~~g~~p 599 (689)
...+++.+...+++..+.+.+.||.|
T Consensus 34 TqeqAd~ik~~id~~~~~~~qnGf~p 59 (59)
T PF10925_consen 34 TQEQADAIKKHIDQRQEYMQQNGFVP 59 (59)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34567788888899999999999988
No 490
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=20.74 E-value=9e+02 Score=24.60 Aligned_cols=119 Identities=12% Similarity=0.108 Sum_probs=77.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc------cCcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCCH
Q 036237 397 MATQALDLFNKMCRMGMKPTAITFIGVLNACSH------AGLVNDGRRYFNMMINDYGIEPTI-EHYGCLVDILCRTGYL 469 (689)
Q Consensus 397 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~------~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~ 469 (689)
-.++++.++++....+ .|.....-..|.+|-- .-+|..-..+|+.+. .+.|++ .+.|--+ ++++..-.
T Consensus 271 lI~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~---~~apSPvV~LNRAV-Ala~~~Gp 345 (415)
T COG4941 271 LIDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALE---QAAPSPVVTLNRAV-ALAMREGP 345 (415)
T ss_pred HHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHH---HhCCCCeEeehHHH-HHHHhhhH
Confidence 3568888888888876 4888887777766532 235777777777776 455664 3333333 33333345
Q ss_pred HHHHHHHHhCCCCC---C-HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCch
Q 036237 470 EEAKSTIESMPMRP---N-FVIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIG 520 (689)
Q Consensus 470 ~~A~~~~~~~~~~p---~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 520 (689)
+.++..++...-+| + ...+..-..-+.+.|..++|...|++++.+.++...
T Consensus 346 ~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ae 400 (415)
T COG4941 346 AAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAE 400 (415)
T ss_pred HhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHH
Confidence 56666666664332 1 223444556678899999999999999998886543
No 491
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=20.68 E-value=1.7e+02 Score=30.86 Aligned_cols=104 Identities=15% Similarity=0.123 Sum_probs=62.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhc
Q 036237 389 IVGLGMHGMATQALDLFNKMCRMGMKPTAITFIGVL-NACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRT 466 (689)
Q Consensus 389 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~ 466 (689)
...+...+.++.|+.++.+.++ +.||...|-..= .++.+.+++..|+.=+..+++ ..|+ ...|--=..++.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie---~dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIE---LDPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhh---cCchhhheeeeccHHHHhH
Confidence 3445566778888888888887 678766554333 667777888777776666663 2343 22222222334444
Q ss_pred CCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh
Q 036237 467 GYLEEAKSTIESM-PMRPNFVIWMSLLSGARN 497 (689)
Q Consensus 467 g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~ 497 (689)
+++.+|+..|+.. .+.|+..-..-.+.-|-.
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 5666666666664 355666665555555543
No 492
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=20.45 E-value=4.5e+02 Score=22.95 Aligned_cols=62 Identities=13% Similarity=0.188 Sum_probs=27.9
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCH
Q 036237 406 NKMCRMGMKPTAITFIGVLNACSHAGLVNDGRRYFNMMINDYGIEPTIEHYGCLVDILCRTGYL 469 (689)
Q Consensus 406 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 469 (689)
+.+.+.|++++..-. .++..+.+.+..-.|.++|+.+.++ +..-+..|--.-++.+...|-+
T Consensus 10 ~~lk~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l~~~-~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 10 ERLKEAGLRLTPQRL-AVLELLLEADGHLSAEELYEELREE-GPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHHHHh-CCCCCHhHHHHHHHHHHHCCCE
Confidence 334445554443321 2334444444445566666666532 3333333333334555555553
No 493
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=20.34 E-value=6e+02 Score=23.66 Aligned_cols=61 Identities=20% Similarity=0.114 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchhHHHHH-HHHHhcCCcchHHHHHHHHH
Q 036237 486 VIWMSLLSGARNHGNKDIGEYAANNLIKVAPDTIGCYVVLS-NIYAAAGQWDKVSEVREMMK 546 (689)
Q Consensus 486 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~-~~~~~~g~~~~A~~~~~~m~ 546 (689)
.....++..|...||++.|.++|--++...+-|......++ .++.+.+.-....+.++.|.
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~ 103 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLI 103 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHH
Confidence 34566777778888888888888877776655554444333 34445554444446666664
No 494
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=20.33 E-value=8.9e+02 Score=24.40 Aligned_cols=163 Identities=15% Similarity=0.179 Sum_probs=88.9
Q ss_pred HHHHHHHHhCCccchhHHhHHHhhHHhcCCHHHHHHHHHhcCC-CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 036237 337 WMHSYIVKNGFVVDGVLGTLLIQMYSKCGSIESALTVFRAISK-KKVGHWTAMIVGLGMHGMATQALDLFNKMCRMGMKP 415 (689)
Q Consensus 337 ~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 415 (689)
-+++.+...++-++......-++...+.+.++-+..++..... .|.. +++ .. +-.+.+.-++++.+. +.|
T Consensus 21 PLlEFl~~r~iy~~keLle~k~~ll~~TNMiDy~md~~k~l~~sed~p--~a~----~e--kr~~Vla~lkeLe~e-v~p 91 (432)
T KOG2758|consen 21 PLLEFLSLRQIYDEKELLEAKLQLLNKTNMIDYVMDTYKNLHTSEDMP--NAL----VE--KRTEVLAELKELEEE-VAP 91 (432)
T ss_pred HHHHHhhhhccCCHHHHHHHHHHHHcccchHHHHHHHHhcccccccch--HHH----HH--HHHHHHHHHHHHHHH-HHH
Confidence 3445555556666666666667777777777877777776632 1110 111 10 112223333333321 111
Q ss_pred CHHHHHHHH---HHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHH---hCCCCCCH---
Q 036237 416 TAITFIGVL---NACSHAGLVNDGRRYFNMMINDYGIEPT-IEHYGCLVDILCRTGYLEEAKSTIE---SMPMRPNF--- 485 (689)
Q Consensus 416 ~~~t~~~ll---~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~---~~~~~p~~--- 485 (689)
= ..++ ........-.+....++.+.+++++.|+ ..+.--...-...||++..|-..+- .....||.
T Consensus 92 i----v~~le~Pd~~~~~~~~k~~~~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~l 167 (432)
T KOG2758|consen 92 I----VKVLENPDLIAALRSDKDRVQNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYL 167 (432)
T ss_pred H----HHHHcCHHHHHHHHhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhH
Confidence 0 0011 1111112233446788888888999998 4666667777789999999977653 33334554
Q ss_pred -HHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 036237 486 -VIWMSLLSGARNHGNKDIGEYAANNLIK 513 (689)
Q Consensus 486 -~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 513 (689)
.+|+-|.+--. .-+++.|.+-+.++.+
T Consensus 168 salwGKlASEIL-~qnWd~A~edL~rLre 195 (432)
T KOG2758|consen 168 SALWGKLASEIL-TQNWDGALEDLTRLRE 195 (432)
T ss_pred HHHHHHHHHHHH-HhhHHHHHHHHHHHHH
Confidence 34555444332 2467788777766655
Done!